locus-tag class description LKW27_00010 PF00793 DAHP synthetase I family LKW27_00015 PF00877 NlpC/P60 family LKW27_00020 PF00682 HMGL-like LKW27_00020 PF08502 LeuA allosteric (dimerisation) domain LKW27_00030 PF00155 Aminotransferase class I and II LKW27_00030 PF00392 Bacterial regulatory proteins, gntR family LKW27_00035 PF14480 DNA polymerase III polC-type N-terminus I LKW27_00035 PF11490 DNA polymerase III polC-type N-terminus II LKW27_00035 PF07733 Bacterial DNA polymerase III alpha NTPase domain LKW27_00035 PF17657 Bacterial DNA polymerase III alpha subunit finger domain LKW27_00035 PF14579 Helix-hairpin-helix motif LKW27_00035 PF02811 PHP domain LKW27_00035 PF00929 Exonuclease LKW27_00050 PF13307 Helicase C-terminal domain LKW27_00050 PF06733 DEAD_2 LKW27_00060 PF01842 ACT domain LKW27_00060 PF00742 Homoserine dehydrogenase LKW27_00060 PF03447 Homoserine dehydrogenase, NAD binding domain LKW27_00070 PF02566 OsmC-like protein LKW27_00090 PF08463 EcoEI R protein C-terminal LKW27_00090 PF00271 Helicase conserved C-terminal domain LKW27_00090 PF13588 Type I restriction enzyme R protein N terminus (HSDR_N) LKW27_00090 PF04851 Type III restriction enzyme, res subunit LKW27_00110 PF18053 DNA gyrase B subunit insert domain LKW27_00110 PF01751 Toprim domain LKW27_00110 PF00204 DNA gyrase B LKW27_00110 PF00986 DNA gyrase B subunit, carboxyl terminus LKW27_00110 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LKW27_00115 PF02767 DNA polymerase III beta subunit, central domain LKW27_00115 PF00712 DNA polymerase III beta subunit, N-terminal domain LKW27_00115 PF02768 DNA polymerase III beta subunit, C-terminal domain LKW27_00120 PF00308 Bacterial dnaA protein LKW27_00120 PF08299 Bacterial dnaA protein helix-turn-helix LKW27_00120 PF11638 DnaA N-terminal domain LKW27_00125 PF00468 Ribosomal protein L34 LKW27_00130 PF00825 Ribonuclease P LKW27_00135 PF01809 Putative membrane protein insertion efficiency factor LKW27_00140 PF14849 YidC periplasmic domain LKW27_00140 PF02096 60Kd inner membrane protein LKW27_00150 PF12631 MnmE helical domain LKW27_00150 PF01926 50S ribosome-binding GTPase LKW27_00150 PF10396 GTP-binding protein TrmE N-terminus LKW27_00165 PF00667 FAD binding domain LKW27_00165 PF00258 Flavodoxin LKW27_00165 PF00175 Oxidoreductase NAD-binding domain LKW27_00170 PF00156 Phosphoribosyl transferase domain LKW27_00175 PF02080 TrkA-C domain LKW27_00175 PF02254 TrkA-N domain LKW27_00175 PF00999 Sodium/hydrogen exchanger family LKW27_00180 PF00571 CBS domain LKW27_00180 PF01380 SIS domain LKW27_00195 PF00106 short chain dehydrogenase LKW27_00200 PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) LKW27_00205 PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) LKW27_00210 PF01169 Uncharacterized protein family UPF0016 LKW27_00215 PF00561 alpha/beta hydrolase fold LKW27_00225 PF00990 Diguanylate cyclase, GGDEF domain LKW27_00230 PF05985 Ethanolamine ammonia-lyase light chain (EutC) LKW27_00235 PF06751 Ethanolamine ammonia lyase large subunit (EutB) LKW27_00240 PF00324 Amino acid permease LKW27_00245 PF12833 Helix-turn-helix domain LKW27_00255 PF07690 Major Facilitator Superfamily LKW27_00260 PF02463 RecF/RecN/SMC N terminal domain LKW27_00260 PF06470 SMC proteins Flexible Hinge Domain LKW27_00275 PF04452 RNA methyltransferase LKW27_00280 PF01636 Phosphotransferase enzyme family LKW27_00285 PF04453 LPS transport system D LKW27_00290 PF09312 SurA N-terminal domain LKW27_00290 PF00639 PPIC-type PPIASE domain LKW27_00295 PF00398 Ribosomal RNA adenine dimethylase LKW27_00305 PF00545 ribonuclease LKW27_00310 PF00390 Malic enzyme, N-terminal domain LKW27_00310 PF03949 Malic enzyme, NAD binding domain LKW27_00310 PF01515 Phosphate acetyl/butaryl transferase LKW27_00325 PF07171 MlrC C-terminus LKW27_00325 PF07364 Metallopeptidase family M81 LKW27_00330 PF01546 Peptidase family M20/M25/M40 LKW27_00330 PF07687 Peptidase dimerisation domain LKW27_00335 PF00005 ABC transporter LKW27_00340 PF12399 Branched-chain amino acid ATP-binding cassette transporter LKW27_00340 PF00005 ABC transporter LKW27_00345 PF11862 Domain of unknown function (DUF3382) LKW27_00345 PF02653 Branched-chain amino acid transport system / permease component LKW27_00350 PF02653 Branched-chain amino acid transport system / permease component LKW27_00360 PF07729 FCD domain LKW27_00360 PF00392 Bacterial regulatory proteins, gntR family LKW27_00365 PF00072 Response regulator receiver domain LKW27_00365 PF00990 Diguanylate cyclase, GGDEF domain LKW27_00375 PF00171 Aldehyde dehydrogenase family LKW27_00385 PF00202 Aminotransferase class-III LKW27_00390 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LKW27_00390 PF03466 LysR substrate binding domain LKW27_00420 PF02558 Ketopantoate reductase PanE/ApbA LKW27_00420 PF08546 Ketopantoate reductase PanE/ApbA C terminal LKW27_00445 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LKW27_00445 PF08448 PAS fold LKW27_00445 PF00512 His Kinase A (phospho-acceptor) domain LKW27_00445 PF00072 Response regulator receiver domain LKW27_00445 PF13188 PAS domain LKW27_00450 PF00677 Lumazine binding domain LKW27_00455 PF00990 Diguanylate cyclase, GGDEF domain LKW27_00480 PF00293 NUDIX domain LKW27_00490 PF02652 L-lactate permease LKW27_00505 PF00990 Diguanylate cyclase, GGDEF domain LKW27_00510 PF00753 Metallo-beta-lactamase superfamily LKW27_00520 PF04143 Sulphur transport LKW27_00540 PF00436 Single-strand binding protein family LKW27_00545 PF00654 Voltage gated chloride channel LKW27_00550 PF07690 Major Facilitator Superfamily LKW27_00565 PF17755 UvrA DNA-binding domain LKW27_00565 PF17760 UvrA interaction domain LKW27_00590 PF00672 HAMP domain LKW27_00590 PF02203 Tar ligand binding domain homologue LKW27_00590 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LKW27_00595 PF00892 EamA-like transporter family LKW27_00600 PF00893 Small Multidrug Resistance protein LKW27_00610 PF03401 Tripartite tricarboxylate transporter family receptor LKW27_00620 PF01757 Acyltransferase family LKW27_00625 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family LKW27_00630 PF00892 EamA-like transporter family LKW27_00640 PF00162 Phosphoglycerate kinase LKW27_00655 PF00551 Formyl transferase LKW27_00655 PF02911 Formyl transferase, C-terminal domain LKW27_00665 PF01327 Polypeptide deformylase LKW27_00675 PF17782 DprA winged helix domain LKW27_00675 PF02481 DNA recombination-mediator protein A LKW27_00680 PF01118 Semialdehyde dehydrogenase, NAD binding domain LKW27_00685 PF00549 CoA-ligase LKW27_00685 PF08442 ATP-grasp domain LKW27_00690 PF00549 CoA-ligase LKW27_00690 PF02629 CoA binding domain LKW27_00695 PF03741 Integral membrane protein TerC family LKW27_00705 PF00498 FHA domain LKW27_00705 PF12773 Double zinc ribbon LKW27_00710 PF00114 Pilin (bacterial filament) LKW27_00710 PF07963 Prokaryotic N-terminal methylation motif LKW27_00715 PF11846 Virulence factor membrane-bound polymerase, C-terminal LKW27_00715 PF04932 O-Antigen ligase LKW27_00715 PF15864 Protein glycosylation ligase LKW27_00725 PF01967 MoaC family LKW27_00730 PF13181 Tetratricopeptide repeat LKW27_00730 PF01435 Peptidase family M48 LKW27_00735 PF04020 Mycobacterial 4 TMS phage holin, superfamily IV LKW27_00745 PF03741 Integral membrane protein TerC family LKW27_00760 PF07152 YaeQ protein LKW27_00765 PF08328 Adenylosuccinate lyase C-terminal LKW27_00765 PF00206 Lyase LKW27_00770 PF13417 Glutathione S-transferase, N-terminal domain LKW27_00770 PF00043 Glutathione S-transferase, C-terminal domain LKW27_00775 PF00255 Glutathione peroxidase LKW27_00780 PF01966 HD domain LKW27_00780 PF11871 Domain of unknown function (DUF3391) LKW27_00790 PF00873 AcrB/AcrD/AcrF family LKW27_00795 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion LKW27_00800 PF02321 Outer membrane efflux protein LKW27_00805 PF00440 Bacterial regulatory proteins, tetR family LKW27_00805 PF08361 MAATS-type transcriptional repressor, C-terminal region LKW27_00820 PF13193 AMP-binding enzyme C-terminal domain LKW27_00820 PF00501 AMP-binding enzyme LKW27_00820 PF00550 Phosphopantetheine attachment site LKW27_00820 PF00975 Thioesterase domain LKW27_00820 PF00668 Condensation domain LKW27_00825 PF08335 GlnD PII-uridylyltransferase LKW27_00825 PF03710 Glutamate-ammonia ligase adenylyltransferase LKW27_00835 PF00795 Carbon-nitrogen hydrolase LKW27_00840 PF00989 PAS fold LKW27_00840 PF00512 His Kinase A (phospho-acceptor) domain LKW27_00840 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LKW27_00845 PF00072 Response regulator receiver domain LKW27_00845 PF00196 Bacterial regulatory proteins, luxR family LKW27_00850 PF00691 OmpA family LKW27_00850 PF04972 BON domain LKW27_00855 PF06725 3D domain LKW27_00855 PF03562 MltA specific insert domain LKW27_00875 PF05977 Transmembrane secretion effector LKW27_00885 PF01037 Lrp/AsnC ligand binding domain LKW27_00895 PF02699 Preprotein translocase subunit LKW27_00900 PF07549 SecD/SecF GG Motif LKW27_00900 PF02355 Protein export membrane protein LKW27_00900 PF13721 SecD export protein N-terminal TM region LKW27_00905 PF02355 Protein export membrane protein LKW27_00905 PF07549 SecD/SecF GG Motif LKW27_00915 PF02631 RecX family LKW27_00920 PF00154 recA bacterial DNA recombination protein LKW27_00930 PF00072 Response regulator receiver domain LKW27_00930 PF00486 Transcriptional regulatory protein, C terminal LKW27_00935 PF08521 Two-component sensor kinase N-terminal LKW27_00935 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LKW27_00935 PF00512 His Kinase A (phospho-acceptor) domain LKW27_00945 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LKW27_00945 PF03466 LysR substrate binding domain LKW27_00950 PF03401 Tripartite tricarboxylate transporter family receptor LKW27_00965 PF02661 Fic/DOC family LKW27_00975 PF02237 Biotin protein ligase C terminal domain LKW27_00975 PF03099 Biotin/lipoate A/B protein ligase family LKW27_00975 PF08279 HTH domain LKW27_00985 PF01751 Toprim domain LKW27_00985 PF01131 DNA topoisomerase LKW27_01010 PF06271 RDD family LKW27_01030 PF00580 UvrD/REP helicase N-terminal domain LKW27_01030 PF13361 UvrD-like helicase C-terminal domain LKW27_01065 PF06983 3-demethylubiquinone-9 3-methyltransferase LKW27_01080 PF00106 short chain dehydrogenase LKW27_01085 PF00884 Sulfatase LKW27_01095 PF00924 Mechanosensitive ion channel LKW27_01115 PF02678 Pirin LKW27_01115 PF05726 Pirin C-terminal cupin domain LKW27_01150 PF07722 Peptidase C26 LKW27_01175 PF00691 OmpA family LKW27_01175 PF05736 OprF membrane domain LKW27_01185 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LKW27_01185 PF03466 LysR substrate binding domain LKW27_01195 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain LKW27_01195 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain LKW27_01215 PF00456 Transketolase, thiamine diphosphate binding domain LKW27_01215 PF02779 Transketolase, pyrimidine binding domain LKW27_01215 PF02780 Transketolase, C-terminal domain LKW27_01220 PF02675 S-adenosylmethionine decarboxylase LKW27_01225 PF00483 Nucleotidyl transferase LKW27_01230 PF05195 Aminopeptidase P, N-terminal domain LKW27_01230 PF00557 Metallopeptidase family M24 LKW27_01235 PF02887 Pyruvate kinase, alpha/beta domain LKW27_01235 PF00224 Pyruvate kinase, barrel domain LKW27_01250 PF00486 Transcriptional regulatory protein, C terminal LKW27_01250 PF00072 Response regulator receiver domain LKW27_01255 PF00512 His Kinase A (phospho-acceptor) domain LKW27_01255 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LKW27_01260 PF01116 Fructose-bisphosphate aldolase class-II LKW27_01270 PF13193 AMP-binding enzyme C-terminal domain LKW27_01270 PF00501 AMP-binding enzyme LKW27_01275 PF01048 Phosphorylase superfamily LKW27_01280 PF01544 CorA-like Mg2+ transporter protein LKW27_01295 PF00814 Glycoprotease family LKW27_01320 PF01300 Telomere recombination LKW27_01320 PF03481 Putative GTP-binding controlling metal-binding LKW27_01325 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain LKW27_01325 PF02222 ATP-grasp domain LKW27_01330 PF00731 AIR carboxylase LKW27_01335 PF00085 Thioredoxin LKW27_01345 PF01259 SAICAR synthetase LKW27_01350 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein LKW27_01355 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 LKW27_01360 PF02603 HPr Serine kinase N terminus LKW27_01360 PF07475 HPr Serine kinase C-terminal domain LKW27_01365 PF01475 Ferric uptake regulator family LKW27_01370 PF04355 SmpA / OmlA family LKW27_01375 PF05173 Dihydrodipicolinate reductase, C-terminus LKW27_01375 PF01113 Dihydrodipicolinate reductase, N-terminus LKW27_01380 PF01618 MotA/TolQ/ExbB proton channel family LKW27_01385 PF02472 Biopolymer transport protein ExbD/TolR LKW27_01390 PF00563 EAL domain LKW27_01390 PF00990 Diguanylate cyclase, GGDEF domain LKW27_01390 PF03707 Bacterial signalling protein N terminal repeat LKW27_01390 PF13188 PAS domain LKW27_01400 PF08264 Anticodon-binding domain of tRNA LKW27_01400 PF13603 Leucyl-tRNA synthetase, Domain 2 LKW27_01400 PF00133 tRNA synthetases class I (I, L, M and V) LKW27_01400 PF09334 tRNA synthetases class I (M) LKW27_01420 PF00171 Aldehyde dehydrogenase family LKW27_01425 PF02080 TrkA-C domain LKW27_01425 PF02254 TrkA-N domain LKW27_01440 PF02705 K+ potassium transporter LKW27_01445 PF03594 Benzoate membrane transport protein LKW27_01450 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain LKW27_01450 PF02951 Prokaryotic glutathione synthetase, N-terminal domain LKW27_01495 PF03144 Elongation factor Tu domain 2 LKW27_01495 PF03143 Elongation factor Tu C-terminal domain LKW27_01495 PF00009 Elongation factor Tu GTP binding domain LKW27_01505 PF00584 SecE/Sec61-gamma subunits of protein translocation complex LKW27_01510 PF00467 KOW motif LKW27_01510 PF02357 Transcription termination factor nusG LKW27_01515 PF00298 Ribosomal protein L11, RNA binding domain LKW27_01515 PF03946 Ribosomal protein L11, N-terminal domain LKW27_01520 PF00687 Ribosomal protein L1p/L10e family LKW27_01525 PF00466 Ribosomal protein L10 LKW27_01530 PF16320 Ribosomal protein L7/L12 dimerisation domain LKW27_01530 PF00542 Ribosomal protein L7/L12 C-terminal domain LKW27_01535 PF04563 RNA polymerase beta subunit LKW27_01535 PF04561 RNA polymerase Rpb2, domain 2 LKW27_01535 PF04565 RNA polymerase Rpb2, domain 3 LKW27_01535 PF10385 RNA polymerase beta subunit external 1 domain LKW27_01535 PF00562 RNA polymerase Rpb2, domain 6 LKW27_01535 PF04560 RNA polymerase Rpb2, domain 7 LKW27_01540 PF00623 RNA polymerase Rpb1, domain 2 LKW27_01540 PF04998 RNA polymerase Rpb1, domain 5 LKW27_01540 PF04997 RNA polymerase Rpb1, domain 1 LKW27_01540 PF04983 RNA polymerase Rpb1, domain 3 LKW27_01540 PF05000 RNA polymerase Rpb1, domain 4 LKW27_01550 PF01189 16S rRNA methyltransferase RsmB/F LKW27_01550 PF01029 NusB family LKW27_01560 PF00989 PAS fold LKW27_01560 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LKW27_01560 PF00672 HAMP domain LKW27_01560 PF00512 His Kinase A (phospho-acceptor) domain LKW27_01565 PF02954 Bacterial regulatory protein, Fis family LKW27_01565 PF00072 Response regulator receiver domain LKW27_01565 PF00158 Sigma-54 interaction domain LKW27_01580 PF00080 Copper/zinc superoxide dismutase (SODC) LKW27_01585 PF07995 Glucose / Sorbosone dehydrogenase LKW27_01590 PF13391 HNH endonuclease LKW27_01605 PF04244 Deoxyribodipyrimidine photo-lyase-related protein LKW27_01620 PF00005 ABC transporter LKW27_01625 PF00528 Binding-protein-dependent transport system inner membrane component LKW27_01640 PF13350 Tyrosine phosphatase family LKW27_01660 PF01266 FAD dependent oxidoreductase LKW27_01675 PF13454 FAD-NAD(P)-binding LKW27_01680 PF03401 Tripartite tricarboxylate transporter family receptor LKW27_01720 PF00672 HAMP domain LKW27_01720 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LKW27_01720 PF02203 Tar ligand binding domain homologue LKW27_01730 PF00291 Pyridoxal-phosphate dependent enzyme LKW27_01735 PF01037 Lrp/AsnC ligand binding domain LKW27_01785 PF03401 Tripartite tricarboxylate transporter family receptor LKW27_01795 PF01702 Queuine tRNA-ribosyltransferase LKW27_01800 PF00582 Universal stress protein family LKW27_01810 PF02253 Phospholipase A1 LKW27_01815 PF00580 UvrD/REP helicase N-terminal domain LKW27_01815 PF13361 UvrD-like helicase C-terminal domain LKW27_01835 PF00270 DEAD/DEAH box helicase LKW27_01835 PF00271 Helicase conserved C-terminal domain LKW27_01835 PF17764 3′ DNA-binding domain (3′BD) LKW27_01835 PF18074 Primosomal protein N C-terminal domain LKW27_01835 PF18319 PriA DNA helicase Cys-rich region (CRR) domain LKW27_01845 PF01208 Uroporphyrinogen decarboxylase (URO-D) LKW27_01855 PF03401 Tripartite tricarboxylate transporter family receptor LKW27_01860 PF16385 Domain of unknown function LKW27_01860 PF00884 Sulfatase LKW27_01885 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LKW27_01885 PF03466 LysR substrate binding domain LKW27_01890 PF03741 Integral membrane protein TerC family LKW27_01925 PF02272 DHHA1 domain LKW27_01925 PF01411 tRNA synthetases class II (A) LKW27_01925 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain LKW27_01930 PF00107 Zinc-binding dehydrogenase LKW27_01930 PF08240 Alcohol dehydrogenase GroES-like domain LKW27_01935 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LKW27_01935 PF03466 LysR substrate binding domain LKW27_01940 PF01970 Tripartite tricarboxylate transporter TctA family LKW27_01970 PF02203 Tar ligand binding domain homologue LKW27_01970 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LKW27_01970 PF00672 HAMP domain LKW27_01990 PF00291 Pyridoxal-phosphate dependent enzyme LKW27_02000 PF02567 Phenazine biosynthesis-like protein LKW27_02005 PF00043 Glutathione S-transferase, C-terminal domain LKW27_02005 PF13417 Glutathione S-transferase, N-terminal domain LKW27_02010 PF00155 Aminotransferase class I and II LKW27_02015 PF00892 EamA-like transporter family LKW27_02020 PF01810 LysE type translocator LKW27_02025 PF00155 Aminotransferase class I and II LKW27_02025 PF00392 Bacterial regulatory proteins, gntR family LKW27_02040 PF00700 Bacterial flagellin C-terminal helical region LKW27_02040 PF00669 Bacterial flagellin N-terminal helical region LKW27_02045 PF06429 Flagellar basal body rod FlgEFG protein C-terminal LKW27_02045 PF00460 Flagella basal body rod protein LKW27_02050 PF10135 Rod binding protein LKW27_02050 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase LKW27_02055 PF02119 Flagellar P-ring protein LKW27_02065 PF02107 Flagellar L-ring protein LKW27_02070 PF06429 Flagellar basal body rod FlgEFG protein C-terminal LKW27_02070 PF00460 Flagella basal body rod protein LKW27_02075 PF00460 Flagella basal body rod protein LKW27_02075 PF06429 Flagellar basal body rod FlgEFG protein C-terminal LKW27_02080 PF06429 Flagellar basal body rod FlgEFG protein C-terminal LKW27_02080 PF00460 Flagella basal body rod protein LKW27_02080 PF07559 Flagellar basal body protein FlaE LKW27_02085 PF13861 FlgD Tudor-like domain LKW27_02085 PF03963 Flagellar hook capping protein - N-terminal region LKW27_02085 PF13860 FlgD Ig-like domain LKW27_02090 PF00460 Flagella basal body rod protein LKW27_02090 PF06429 Flagellar basal body rod FlgEFG protein C-terminal LKW27_02095 PF00460 Flagella basal body rod protein LKW27_02115 PF04545 Sigma-70, region 4 LKW27_02115 PF04539 Sigma-70 region 3 LKW27_02115 PF04542 Sigma-70 region 2 LKW27_02125 PF00448 SRP54-type protein, GTPase domain LKW27_02130 PF00771 FHIPEP family LKW27_02135 PF01312 FlhB HrpN YscU SpaS Family LKW27_02140 PF04344 Chemotaxis phosphatase, CheZ LKW27_02145 PF00072 Response regulator receiver domain LKW27_02150 PF13677 Membrane MotB of proton-channel complex MotA/MotB LKW27_02150 PF00691 OmpA family LKW27_02155 PF01618 MotA/TolQ/ExbB proton channel family LKW27_02160 PF00535 Glycosyl transferase family 2 LKW27_02165 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family LKW27_02170 PF01266 FAD dependent oxidoreductase LKW27_02180 PF13649 Methyltransferase domain LKW27_02185 PF08889 WbqC-like protein family LKW27_02190 PF00700 Bacterial flagellin C-terminal helical region LKW27_02190 PF00669 Bacterial flagellin N-terminal helical region LKW27_02195 PF00669 Bacterial flagellin N-terminal helical region LKW27_02195 PF00700 Bacterial flagellin C-terminal helical region LKW27_02200 PF02465 Flagellar hook-associated protein 2 N-terminus LKW27_02200 PF07195 Flagellar hook-associated protein 2 C-terminus LKW27_02200 PF07196 Flagellin hook IN motif LKW27_02205 PF02561 Flagellar protein FliS LKW27_02215 PF02049 Flagellar hook-basal body complex protein FliE LKW27_02220 PF08345 Flagellar M-ring protein C-terminal LKW27_02220 PF01514 Secretory protein of YscJ/FliF family LKW27_02225 PF14842 FliG N-terminal domain LKW27_02225 PF01706 FliG C-terminal domain LKW27_02225 PF14841 FliG middle domain LKW27_02235 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain LKW27_02235 PF18269 T3SS EscN ATPase C-terminal domain LKW27_02250 PF03748 Flagellar basal body-associated protein FliL LKW27_02255 PF02154 Flagellar motor switch protein FliM LKW27_02255 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term LKW27_02260 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term LKW27_02260 PF16973 Flagellar motor switch protein FliN N-terminal LKW27_02270 PF00813 FliP family LKW27_02275 PF01313 Bacterial export proteins, family 3 LKW27_02280 PF01311 Bacterial export proteins, family 1 LKW27_02285 PF00196 Bacterial regulatory proteins, luxR family LKW27_02285 PF00072 Response regulator receiver domain LKW27_02290 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LKW27_02290 PF07730 Histidine kinase LKW27_02290 PF05231 MASE1 LKW27_02300 PF00072 Response regulator receiver domain LKW27_02305 PF01627 Hpt domain LKW27_02305 PF02895 Signal transducing histidine kinase, homodimeric domain LKW27_02305 PF01584 CheW-like domain LKW27_02305 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LKW27_02305 PF09078 CheY binding LKW27_02310 PF01584 CheW-like domain LKW27_02315 PF01739 CheR methyltransferase, SAM binding domain LKW27_02315 PF03705 CheR methyltransferase, all-alpha domain LKW27_02320 PF03975 CheD chemotactic sensory transduction LKW27_02325 PF01339 CheB methylesterase LKW27_02325 PF00072 Response regulator receiver domain LKW27_02330 PF00005 ABC transporter LKW27_02330 PF16326 ABC transporter C-terminal domain LKW27_02330 PF12848 ABC transporter LKW27_02360 PF13411 MerR HTH family regulatory protein LKW27_02370 PF00441 Acyl-CoA dehydrogenase, C-terminal domain LKW27_02370 PF02770 Acyl-CoA dehydrogenase, middle domain LKW27_02370 PF02771 Acyl-CoA dehydrogenase, N-terminal domain LKW27_02375 PF00484 Carbonic anhydrase LKW27_02380 PF06315 Isocitrate dehydrogenase kinase/phosphatase (AceK) LKW27_02385 PF02803 Thiolase, C-terminal domain LKW27_02385 PF00108 Thiolase, N-terminal domain LKW27_02400 PF00441 Acyl-CoA dehydrogenase, C-terminal domain LKW27_02400 PF02770 Acyl-CoA dehydrogenase, middle domain LKW27_02400 PF02771 Acyl-CoA dehydrogenase, N-terminal domain LKW27_02405 PF03575 Peptidase family S51 LKW27_02420 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LKW27_02420 PF01627 Hpt domain LKW27_02420 PF00512 His Kinase A (phospho-acceptor) domain LKW27_02420 PF00072 Response regulator receiver domain LKW27_02425 PF13419 Haloacid dehalogenase-like hydrolase LKW27_02445 PF00501 AMP-binding enzyme LKW27_02445 PF13193 AMP-binding enzyme C-terminal domain LKW27_02450 PF01039 Carboxyl transferase domain LKW27_02455 PF00378 Enoyl-CoA hydratase/isomerase LKW27_02465 PF00364 Biotin-requiring enzyme LKW27_02465 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain LKW27_02465 PF02785 Biotin carboxylase C-terminal domain LKW27_02465 PF00289 Biotin carboxylase, N-terminal domain LKW27_02470 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain LKW27_02475 PF00682 HMGL-like LKW27_02490 PF01323 DSBA-like thioredoxin domain LKW27_02495 PF08946 Osmosensory transporter coiled coil LKW27_02495 PF00083 Sugar (and other) transporter LKW27_02500 PF13609 Gram-negative porin LKW27_02505 PF13609 Gram-negative porin LKW27_02515 PF13458 Periplasmic binding protein LKW27_02520 PF00005 ABC transporter LKW27_02520 PF17755 UvrA DNA-binding domain LKW27_02520 PF17760 UvrA interaction domain LKW27_02555 PF00202 Aminotransferase class-III LKW27_02570 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family LKW27_02580 PF00892 EamA-like transporter family LKW27_02600 PF02687 FtsX-like permease family LKW27_02600 PF00005 ABC transporter LKW27_02600 PF12704 MacB-like periplasmic core domain LKW27_02610 PF02321 Outer membrane efflux protein LKW27_02615 PF00072 Response regulator receiver domain LKW27_02615 PF00486 Transcriptional regulatory protein, C terminal LKW27_02620 PF00672 HAMP domain LKW27_02620 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LKW27_02620 PF00512 His Kinase A (phospho-acceptor) domain LKW27_02625 PF01979 Amidohydrolase family LKW27_02640 PF01435 Peptidase family M48 LKW27_02645 PF03466 LysR substrate binding domain LKW27_02645 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LKW27_02650 PF00378 Enoyl-CoA hydratase/isomerase LKW27_02650 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain LKW27_02650 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain LKW27_02655 PF00441 Acyl-CoA dehydrogenase, C-terminal domain LKW27_02655 PF02770 Acyl-CoA dehydrogenase, middle domain LKW27_02655 PF02771 Acyl-CoA dehydrogenase, N-terminal domain LKW27_02660 PF00441 Acyl-CoA dehydrogenase, C-terminal domain LKW27_02660 PF02770 Acyl-CoA dehydrogenase, middle domain LKW27_02660 PF02771 Acyl-CoA dehydrogenase, N-terminal domain LKW27_02665 PF00378 Enoyl-CoA hydratase/isomerase LKW27_02670 PF02515 CoA-transferase family III LKW27_02675 PF03401 Tripartite tricarboxylate transporter family receptor LKW27_02685 PF01012 Electron transfer flavoprotein domain LKW27_02690 PF00766 Electron transfer flavoprotein FAD-binding domain LKW27_02690 PF01012 Electron transfer flavoprotein domain LKW27_02695 PF00596 Class II Aldolase and Adducin N-terminal domain LKW27_02700 PF03401 Tripartite tricarboxylate transporter family receptor LKW27_02705 PF00672 HAMP domain LKW27_02705 PF02203 Tar ligand binding domain homologue LKW27_02705 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LKW27_02720 PF03706 Lysylphosphatidylglycerol synthase TM region LKW27_02725 PF13091 PLD-like domain LKW27_02730 PF03372 Endonuclease/Exonuclease/phosphatase family LKW27_02735 PF00291 Pyridoxal-phosphate dependent enzyme LKW27_02745 PF13545 Crp-like helix-turn-helix domain LKW27_02745 PF00027 Cyclic nucleotide-binding domain LKW27_02750 PF00672 HAMP domain LKW27_02750 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LKW27_02750 PF02203 Tar ligand binding domain homologue LKW27_02760 PF00563 EAL domain LKW27_02760 PF03707 Bacterial signalling protein N terminal repeat LKW27_02760 PF00990 Diguanylate cyclase, GGDEF domain LKW27_02765 PF01479 S4 domain LKW27_02765 PF00849 RNA pseudouridylate synthase LKW27_02780 PF00183 Hsp90 protein LKW27_02780 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LKW27_02820 PF05593 RHS Repeat LKW27_02820 PF14220 Domain of unknown function (DUF4329) LKW27_02820 PF03527 RHS protein LKW27_02840 PF17149 Periplasmic sensor domain found in signal transduction proteins LKW27_02840 PF00672 HAMP domain LKW27_02840 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LKW27_02840 PF00512 His Kinase A (phospho-acceptor) domain LKW27_02840 PF01627 Hpt domain LKW27_02840 PF00072 Response regulator receiver domain LKW27_02845 PF01547 Bacterial extracellular solute-binding protein LKW27_02855 PF00486 Transcriptional regulatory protein, C terminal LKW27_02855 PF00072 Response regulator receiver domain LKW27_02860 PF01636 Phosphotransferase enzyme family LKW27_02865 PF00069 Protein kinase domain LKW27_02865 PF03793 PASTA domain LKW27_02880 PF02566 OsmC-like protein LKW27_02885 PF01047 MarR family LKW27_02890 PF03328 HpcH/HpaI aldolase/citrate lyase family LKW27_02895 PF01557 Fumarylacetoacetate (FAA) hydrolase family LKW27_02900 PF01557 Fumarylacetoacetate (FAA) hydrolase family LKW27_02905 PF04909 Amidohydrolase LKW27_02910 PF01042 Endoribonuclease L-PSP LKW27_02915 PF03401 Tripartite tricarboxylate transporter family receptor LKW27_02920 PF01613 Flavin reductase like domain LKW27_02925 PF09339 IclR helix-turn-helix domain LKW27_02925 PF01614 Bacterial transcriptional regulator LKW27_02930 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain LKW27_02930 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain LKW27_02935 PF01061 ABC-2 type transporter LKW27_02940 PF00005 ABC transporter LKW27_02945 PF02222 ATP-grasp domain LKW27_02950 PF00082 Subtilase family LKW27_02955 PF00012 Hsp70 protein LKW27_02970 PF00356 Bacterial regulatory proteins, lacI family LKW27_02975 PF05524 PEP-utilising enzyme, N-terminal LKW27_02975 PF00391 PEP-utilising enzyme, mobile domain LKW27_02975 PF02896 PEP-utilising enzyme, TIM barrel domain LKW27_02975 PF00381 PTS HPr component phosphorylation site LKW27_02975 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 LKW27_02980 PF00294 pfkB family carbohydrate kinase LKW27_02985 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit LKW27_03000 PF05230 MASE2 domain LKW27_03000 PF00990 Diguanylate cyclase, GGDEF domain LKW27_03005 PF10423 Bacterial AMP nucleoside phosphorylase N-terminus LKW27_03005 PF01048 Phosphorylase superfamily LKW27_03010 PF00270 DEAD/DEAH box helicase LKW27_03010 PF03880 DbpA RNA binding domain LKW27_03010 PF00271 Helicase conserved C-terminal domain LKW27_03015 PF16916 Dimerisation domain of Zinc Transporter LKW27_03015 PF01545 Cation efflux family LKW27_03020 PF02580 D-Tyr-tRNA(Tyr) deacylase LKW27_03025 PF02130 Uncharacterized protein family UPF0054 LKW27_03045 PF02562 PhoH-like protein LKW27_03050 PF01330 RuvA N terminal domain LKW27_03050 PF07499 RuvA, C-terminal domain LKW27_03065 PF17864 RuvB AAA lid domain LKW27_03065 PF05491 RuvB C-terminal winged helix domain LKW27_03065 PF05496 Holliday junction DNA helicase RuvB P-loop domain LKW27_03080 PF01168 Alanine racemase, N-terminal domain LKW27_03080 PF14031 Putative serine dehydratase domain LKW27_03085 PF00300 Histidine phosphatase superfamily (branch 1) LKW27_03095 PF01171 PP-loop family LKW27_03100 PF17200 Single Cache domain 2 LKW27_03100 PF07730 Histidine kinase LKW27_03105 PF00196 Bacterial regulatory proteins, luxR family LKW27_03105 PF00072 Response regulator receiver domain LKW27_03110 PF13722 5TM C-terminal transporter carbon starvation CstA LKW27_03110 PF02554 Carbon starvation protein CstA LKW27_03115 PF04328 Selenoprotein, putative LKW27_03140 PF00497 Bacterial extracellular solute-binding proteins, family 3 LKW27_03160 PF00982 Glycosyltransferase family 20 LKW27_03165 PF00723 Glycosyl hydrolases family 15 LKW27_03170 PF02358 Trehalose-phosphatase LKW27_03175 PF00085 Thioredoxin LKW27_03180 PF12627 Probable RNA and SrmB- binding site of polymerase A LKW27_03180 PF01966 HD domain LKW27_03180 PF01743 Poly A polymerase head domain LKW27_03195 PF00043 Glutathione S-transferase, C-terminal domain LKW27_03195 PF13417 Glutathione S-transferase, N-terminal domain LKW27_03200 PF00990 Diguanylate cyclase, GGDEF domain LKW27_03200 PF00563 EAL domain LKW27_03200 PF03707 Bacterial signalling protein N terminal repeat LKW27_03205 PF01812 5-formyltetrahydrofolate cyclo-ligase family LKW27_03210 PF10145 Phage-related minor tail protein LKW27_03210 PF01551 Peptidase family M23 LKW27_03210 PF01464 Transglycosylase SLT domain LKW27_03220 PF05025 RbsD / FucU transport protein family LKW27_03225 PF00294 pfkB family carbohydrate kinase LKW27_03230 PF00356 Bacterial regulatory proteins, lacI family LKW27_03235 PF02653 Branched-chain amino acid transport system / permease component LKW27_03240 PF00005 ABC transporter LKW27_03245 PF13407 Periplasmic binding protein domain LKW27_03250 PF13193 AMP-binding enzyme C-terminal domain LKW27_03250 PF00501 AMP-binding enzyme LKW27_03265 PF00351 Biopterin-dependent aromatic amino acid hydroxylase LKW27_03270 PF03401 Tripartite tricarboxylate transporter family receptor LKW27_03275 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily LKW27_03285 PF00561 alpha/beta hydrolase fold LKW27_03290 PF01037 Lrp/AsnC ligand binding domain LKW27_03305 PF00571 CBS domain LKW27_03305 PF03471 Transporter associated domain LKW27_03310 PF00795 Carbon-nitrogen hydrolase LKW27_03315 PF03466 LysR substrate binding domain LKW27_03315 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LKW27_03320 PF00710 Asparaginase, N-terminal LKW27_03320 PF17763 Glutaminase/Asparaginase C-terminal domain LKW27_03325 PF07977 FabA-like domain LKW27_03330 PF02801 Beta-ketoacyl synthase, C-terminal domain LKW27_03330 PF00109 Beta-ketoacyl synthase, N-terminal domain LKW27_03335 PF13442 Cytochrome C oxidase, cbb3-type, subunit III LKW27_03340 PF02091 Glycyl-tRNA synthetase alpha subunit LKW27_03345 PF05746 DALR anticodon binding domain LKW27_03345 PF02092 Glycyl-tRNA synthetase beta subunit LKW27_03360 PF01553 Acyltransferase LKW27_03380 PF04972 BON domain LKW27_03380 PF01476 LysM domain LKW27_03385 PF03309 Type III pantothenate kinase LKW27_03400 PF16363 GDP-mannose 4,6 dehydratase LKW27_03405 PF04321 RmlD substrate binding domain LKW27_03410 PF00483 Nucleotidyl transferase LKW27_03415 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase LKW27_03425 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain LKW27_03425 PF00437 Type II/IV secretion system protein LKW27_03430 PF00482 Type II secretion system (T2SS), protein F LKW27_03435 PF07963 Prokaryotic N-terminal methylation motif LKW27_03435 PF08334 Type II secretion system (T2SS), protein G LKW27_03440 PF12019 Type II transport protein GspH LKW27_03445 PF07963 Prokaryotic N-terminal methylation motif LKW27_03475 PF00263 Bacterial type II and III secretion system protein LKW27_03475 PF03958 Bacterial type II/III secretion system short domain LKW27_03500 PF00005 ABC transporter LKW27_03530 PF00696 Amino acid kinase family LKW27_03535 PF00072 Response regulator receiver domain LKW27_03535 PF00486 Transcriptional regulatory protein, C terminal LKW27_03540 PF00512 His Kinase A (phospho-acceptor) domain LKW27_03540 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LKW27_03545 PF00440 Bacterial regulatory proteins, tetR family LKW27_03555 PF12806 Acetyl-CoA dehydrogenase C-terminal like LKW27_03555 PF02770 Acyl-CoA dehydrogenase, middle domain LKW27_03555 PF02771 Acyl-CoA dehydrogenase, N-terminal domain LKW27_03555 PF00441 Acyl-CoA dehydrogenase, C-terminal domain LKW27_03575 PF02803 Thiolase, C-terminal domain LKW27_03575 PF00108 Thiolase, N-terminal domain LKW27_03585 PF00378 Enoyl-CoA hydratase/isomerase LKW27_03590 PF03401 Tripartite tricarboxylate transporter family receptor LKW27_03600 PF03061 Thioesterase superfamily LKW27_03605 PF00664 ABC transporter transmembrane region LKW27_03605 PF00005 ABC transporter LKW27_03610 PF03480 Bacterial extracellular solute-binding protein, family 7 LKW27_03615 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component LKW27_03615 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component LKW27_03620 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component LKW27_03625 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LKW27_03625 PF03466 LysR substrate binding domain LKW27_03630 PF00497 Bacterial extracellular solute-binding proteins, family 3 LKW27_03635 PF00497 Bacterial extracellular solute-binding proteins, family 3 LKW27_03640 PF00528 Binding-protein-dependent transport system inner membrane component LKW27_03645 PF00528 Binding-protein-dependent transport system inner membrane component LKW27_03650 PF00005 ABC transporter LKW27_03660 PF03401 Tripartite tricarboxylate transporter family receptor LKW27_03680 PF00893 Small Multidrug Resistance protein LKW27_03690 PF00009 Elongation factor Tu GTP binding domain LKW27_03690 PF03144 Elongation factor Tu domain 2 LKW27_03690 PF16658 Class II release factor RF3, C-terminal domain LKW27_03695 PF01757 Acyltransferase family LKW27_03700 PF00670 S-adenosyl-L-homocysteine hydrolase, NAD binding domain LKW27_03700 PF05221 S-adenosyl-L-homocysteine hydrolase LKW27_03705 PF01728 FtsJ-like methyltransferase LKW27_03705 PF01479 S4 domain LKW27_03710 PF02219 Methylenetetrahydrofolate reductase LKW27_03720 PF03330 Lytic transglycolase LKW27_03725 PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ LKW27_03735 PF00572 Ribosomal protein L13 LKW27_03740 PF00380 Ribosomal protein S9/S16 LKW27_03755 PF01521 Iron-sulphur cluster biosynthesis LKW27_03760 PF07690 Major Facilitator Superfamily LKW27_03765 PF03702 Anhydro-N-acetylmuramic acid kinase LKW27_03775 PF01479 S4 domain LKW27_03775 PF00579 tRNA synthetases class I (W and Y) LKW27_03780 PF03466 LysR substrate binding domain LKW27_03780 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LKW27_03800 PF00027 Cyclic nucleotide-binding domain LKW27_03800 PF13545 Crp-like helix-turn-helix domain LKW27_03805 PF00132 Bacterial transferase hexapeptide (six repeats) LKW27_03805 PF12804 MobA-like NTP transferase domain LKW27_03810 PF00072 Response regulator receiver domain LKW27_03810 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) LKW27_03810 PF01627 Hpt domain LKW27_03810 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LKW27_03810 PF00672 HAMP domain LKW27_03810 PF00512 His Kinase A (phospho-acceptor) domain LKW27_03820 PF01380 SIS domain LKW27_03840 PF00717 Peptidase S24-like LKW27_03845 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LKW27_03845 PF03466 LysR substrate binding domain LKW27_03850 PF00361 Proton-conducting membrane transporter LKW27_03850 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus LKW27_03855 PF10070 Uncharacterized protein conserved in bacteria (DUF2309) LKW27_03865 PF12146 Serine aminopeptidase, S33 LKW27_03890 PF01272 Transcription elongation factor, GreA/GreB, C-term LKW27_03890 PF03449 Transcription elongation factor, N-terminal LKW27_03900 PF03601 Conserved hypothetical protein 698 LKW27_03905 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LKW27_03905 PF03466 LysR substrate binding domain LKW27_03910 PF02872 5'-nucleotidase, C-terminal domain LKW27_03910 PF00149 Calcineurin-like phosphoesterase LKW27_03925 PF00881 Nitroreductase family LKW27_03935 PF08240 Alcohol dehydrogenase GroES-like domain LKW27_03935 PF13823 Alcohol dehydrogenase GroES-associated LKW27_03935 PF00107 Zinc-binding dehydrogenase LKW27_03950 PF00111 2Fe-2S iron-sulfur cluster binding domain LKW27_03950 PF01799 [2Fe-2S] binding domain LKW27_03950 PF10518 TAT (twin-arginine translocation) pathway signal sequence LKW27_03955 PF03450 CO dehydrogenase flavoprotein C-terminal domain LKW27_03955 PF00941 FAD binding domain in molybdopterin dehydrogenase LKW27_03960 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase LKW27_03960 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain LKW27_03975 PF04717 Type VI secretion system, phage-baseplate injector LKW27_03975 PF06715 Gp5 C-terminal repeat (3 copies) LKW27_03975 PF04717 Type VI secretion system, phage-baseplate injector LKW27_03975 PF06715 Gp5 C-terminal repeat (3 copies) LKW27_03980 PF05593 RHS Repeat LKW27_03980 PF03527 RHS protein LKW27_03980 PF14220 Domain of unknown function (DUF4329) LKW27_03980 PF05593 RHS Repeat LKW27_03980 PF14220 Domain of unknown function (DUF4329) LKW27_03980 PF03527 RHS protein LKW27_04000 PF00270 DEAD/DEAH box helicase LKW27_04000 PF00271 Helicase conserved C-terminal domain LKW27_04000 PF00570 HRDC domain LKW27_04000 PF16124 RecQ zinc-binding LKW27_04000 PF09382 RQC domain LKW27_04005 PF00005 ABC transporter LKW27_04010 PF00528 Binding-protein-dependent transport system inner membrane component LKW27_04010 PF12911 N-terminal TM domain of oligopeptide transport permease C LKW27_04015 PF00528 Binding-protein-dependent transport system inner membrane component LKW27_04025 PF00593 TonB dependent receptor LKW27_04025 PF07715 TonB-dependent Receptor Plug Domain LKW27_04035 PF00990 Diguanylate cyclase, GGDEF domain LKW27_04045 PF01627 Hpt domain LKW27_04045 PF00072 Response regulator receiver domain LKW27_04045 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) LKW27_04045 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LKW27_04045 PF00512 His Kinase A (phospho-acceptor) domain LKW27_04045 PF00672 HAMP domain LKW27_04050 PF01739 CheR methyltransferase, SAM binding domain LKW27_04050 PF03705 CheR methyltransferase, all-alpha domain LKW27_04055 PF01339 CheB methylesterase LKW27_04060 PF00072 Response regulator receiver domain LKW27_04060 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LKW27_04060 PF00512 His Kinase A (phospho-acceptor) domain LKW27_04060 PF09308 LuxQ, periplasmic LKW27_04065 PF00072 Response regulator receiver domain LKW27_04065 PF00486 Transcriptional regulatory protein, C terminal LKW27_04070 PF00199 Catalase LKW27_04070 PF06628 Catalase-related immune-responsive LKW27_04070 PF18011 C-terminal domain found in long catalases LKW27_04085 PF13532 2OG-Fe(II) oxygenase superfamily LKW27_04100 PF05981 CreA protein LKW27_04105 PF02875 Mur ligase family, glutamate ligase domain LKW27_04105 PF08245 Mur ligase middle domain LKW27_04105 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain LKW27_04110 PF02875 Mur ligase family, glutamate ligase domain LKW27_04110 PF08245 Mur ligase middle domain LKW27_04110 PF08443 RimK-like ATP-grasp domain LKW27_04115 PF00664 ABC transporter transmembrane region LKW27_04115 PF00005 ABC transporter LKW27_04140 PF00482 Type II secretion system (T2SS), protein F LKW27_04145 PF00296 Luciferase-like monooxygenase LKW27_04160 PF09704 CRISPR-associated protein (Cas_Cas5) LKW27_04175 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily LKW27_04190 PF13180 PDZ domain LKW27_04195 PF00486 Transcriptional regulatory protein, C terminal LKW27_04195 PF00072 Response regulator receiver domain LKW27_04200 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LKW27_04200 PF00512 His Kinase A (phospho-acceptor) domain LKW27_04205 PF13091 PLD-like domain LKW27_04240 PF04357 TamB, inner membrane protein subunit of TAM complex LKW27_04260 PF01434 Peptidase family M41 LKW27_04260 PF17862 AAA+ lid domain LKW27_04260 PF00004 ATPase family associated with various cellular activities (AAA) LKW27_04265 PF00034 Cytochrome c LKW27_04290 PF09339 IclR helix-turn-helix domain LKW27_04290 PF01614 Bacterial transcriptional regulator LKW27_04295 PF01144 Coenzyme A transferase LKW27_04300 PF01144 Coenzyme A transferase LKW27_04305 PF00108 Thiolase, N-terminal domain LKW27_04305 PF02803 Thiolase, C-terminal domain LKW27_04310 PF12146 Serine aminopeptidase, S33 LKW27_04325 PF00106 short chain dehydrogenase LKW27_04330 PF02667 Short chain fatty acid transporter LKW27_04335 PF02426 Muconolactone delta-isomerase LKW27_04340 PF03401 Tripartite tricarboxylate transporter family receptor LKW27_04365 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase LKW27_04365 PF13442 Cytochrome C oxidase, cbb3-type, subunit III LKW27_04365 PF00034 Cytochrome c LKW27_04370 PF00857 Isochorismatase family LKW27_04380 PF00561 alpha/beta hydrolase fold LKW27_04385 PF17645 Arylmalonate decarboxylase LKW27_04390 PF01494 FAD binding domain LKW27_04395 PF00111 2Fe-2S iron-sulfur cluster binding domain LKW27_04395 PF01799 [2Fe-2S] binding domain LKW27_04400 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase LKW27_04400 PF00034 Cytochrome c LKW27_04400 PF13442 Cytochrome C oxidase, cbb3-type, subunit III LKW27_04405 PF07690 Major Facilitator Superfamily LKW27_04410 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LKW27_04410 PF02203 Tar ligand binding domain homologue LKW27_04410 PF00672 HAMP domain LKW27_04415 PF12802 MarR family LKW27_04420 PF01292 Prokaryotic cytochrome b561 LKW27_04440 PF07715 TonB-dependent Receptor Plug Domain LKW27_04440 PF00593 TonB dependent receptor LKW27_04445 PF00999 Sodium/hydrogen exchanger family LKW27_04445 PF02254 TrkA-N domain LKW27_04450 PF01810 LysE type translocator LKW27_04455 PF13614 AAA domain LKW27_04460 PF01575 MaoC like domain LKW27_04470 PF03466 LysR substrate binding domain LKW27_04470 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LKW27_04475 PF00588 SpoU rRNA Methylase family LKW27_04485 PF08241 Methyltransferase domain LKW27_04490 PF00116 Cytochrome C oxidase subunit II, periplasmic domain LKW27_04490 PF02790 Cytochrome C oxidase subunit II, transmembrane domain LKW27_04495 PF00115 Cytochrome C and Quinol oxidase polypeptide I LKW27_04505 PF04442 Cytochrome c oxidase assembly protein CtaG/Cox11 LKW27_04515 PF00510 Cytochrome c oxidase subunit III LKW27_04535 PF02628 Cytochrome oxidase assembly protein LKW27_04540 PF01040 UbiA prenyltransferase family LKW27_04545 PF02630 SCO1/SenC LKW27_04565 PF00140 Sigma-70 factor, region 1.2 LKW27_04565 PF04542 Sigma-70 region 2 LKW27_04565 PF04545 Sigma-70, region 4 LKW27_04575 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LKW27_04575 PF03466 LysR substrate binding domain LKW27_04585 PF00005 ABC transporter LKW27_04585 PF08402 TOBE domain LKW27_04590 PF00528 Binding-protein-dependent transport system inner membrane component LKW27_04595 PF00155 Aminotransferase class I and II LKW27_04615 PF01914 MarC family integral membrane protein LKW27_04620 PF01554 MatE LKW27_04625 PF03401 Tripartite tricarboxylate transporter family receptor LKW27_04630 PF01965 DJ-1/PfpI family LKW27_04635 PF01965 DJ-1/PfpI family LKW27_04635 PF12833 Helix-turn-helix domain LKW27_04640 PF02203 Tar ligand binding domain homologue LKW27_04640 PF00672 HAMP domain LKW27_04640 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LKW27_04655 PF03812 2-keto-3-deoxygluconate permease LKW27_04665 PF01557 Fumarylacetoacetate (FAA) hydrolase family LKW27_04670 PF00448 SRP54-type protein, GTPase domain LKW27_04670 PF02881 SRP54-type protein, helical bundle domain LKW27_04675 PF00675 Insulinase (Peptidase family M16) LKW27_04675 PF05193 Peptidase M16 inactive domain LKW27_04680 PF05193 Peptidase M16 inactive domain LKW27_04690 PF01467 Cytidylyltransferase-like LKW27_04695 PF15887 Putative zinc-binding metallo-peptidase LKW27_04695 PF10005 zinc-ribbon domain LKW27_04715 PF07043 Protein of unknown function (DUF1328) LKW27_04720 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LKW27_04720 PF07730 Histidine kinase LKW27_04720 PF05231 MASE1 LKW27_04725 PF00072 Response regulator receiver domain LKW27_04725 PF00196 Bacterial regulatory proteins, luxR family LKW27_04735 PF00899 ThiF family LKW27_04740 PF03572 Peptidase family S41 LKW27_04740 PF13180 PDZ domain LKW27_04745 PF00300 Histidine phosphatase superfamily (branch 1) LKW27_04750 PF00581 Rhodanese-like domain LKW27_04755 PF00462 Glutaredoxin LKW27_04760 PF02556 Preprotein translocase subunit SecB LKW27_04765 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus LKW27_04765 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus LKW27_04770 PF02569 Pantoate-beta-alanine ligase LKW27_04775 PF02548 Ketopantoate hydroxymethyltransferase LKW27_04780 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain LKW27_04780 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain LKW27_04785 PF02445 Quinolinate synthetase A protein LKW27_04790 PF04715 Anthranilate synthase component I, N terminal region LKW27_04790 PF00425 chorismate binding enzyme LKW27_04810 PF01242 6-pyruvoyl tetrahydropterin synthase LKW27_04820 PF00155 Aminotransferase class I and II LKW27_04830 PF00202 Aminotransferase class-III LKW27_04835 PF00890 FAD binding domain LKW27_04835 PF02910 Fumarate reductase flavoprotein C-term LKW27_04840 PF02616 Segregation and condensation protein ScpA LKW27_04865 PF01588 Putative tRNA binding domain LKW27_04865 PF09334 tRNA synthetases class I (M) LKW27_04870 PF00205 Thiamine pyrophosphate enzyme, central domain LKW27_04870 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain LKW27_04870 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain LKW27_04885 PF10609 NUBPL iron-transfer P-loop NTPase LKW27_04890 PF07690 Major Facilitator Superfamily LKW27_04895 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LKW27_04895 PF02203 Tar ligand binding domain homologue LKW27_04895 PF00672 HAMP domain LKW27_04900 PF00384 Molybdopterin oxidoreductase LKW27_04905 PF02634 FdhD/NarQ family LKW27_04920 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LKW27_04920 PF03466 LysR substrate binding domain LKW27_04925 PF00171 Aldehyde dehydrogenase family LKW27_04930 PF01425 Amidase LKW27_04935 PF02653 Branched-chain amino acid transport system / permease component LKW27_04940 PF11862 Domain of unknown function (DUF3382) LKW27_04940 PF02653 Branched-chain amino acid transport system / permease component LKW27_04945 PF12399 Branched-chain amino acid ATP-binding cassette transporter LKW27_04945 PF00005 ABC transporter LKW27_04950 PF00005 ABC transporter LKW27_04955 PF13458 Periplasmic binding protein LKW27_04960 PF01425 Amidase LKW27_04970 PF07729 FCD domain LKW27_04970 PF00392 Bacterial regulatory proteins, gntR family LKW27_04975 PF00441 Acyl-CoA dehydrogenase, C-terminal domain LKW27_04975 PF02770 Acyl-CoA dehydrogenase, middle domain LKW27_04975 PF02771 Acyl-CoA dehydrogenase, N-terminal domain LKW27_04980 PF00765 Autoinducer synthase LKW27_04985 PF03472 Autoinducer binding domain LKW27_04985 PF00196 Bacterial regulatory proteins, luxR family LKW27_05010 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain LKW27_05010 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain LKW27_05015 PF13193 AMP-binding enzyme C-terminal domain LKW27_05015 PF00501 AMP-binding enzyme LKW27_05020 PF01554 MatE LKW27_05025 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III LKW27_05025 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal LKW27_05035 PF00550 Phosphopantetheine attachment site LKW27_05060 PF05593 RHS Repeat LKW27_05060 PF03527 RHS protein LKW27_05080 PF05593 RHS Repeat LKW27_05080 PF03527 RHS protein LKW27_05105 PF06715 Gp5 C-terminal repeat (3 copies) LKW27_05105 PF04717 Type VI secretion system, phage-baseplate injector LKW27_05110 PF00149 Calcineurin-like phosphoesterase LKW27_05110 PF02872 5'-nucleotidase, C-terminal domain LKW27_05125 PF00072 Response regulator receiver domain LKW27_05125 PF00486 Transcriptional regulatory protein, C terminal LKW27_05130 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LKW27_05135 PF01713 Smr domain LKW27_05135 PF00488 MutS domain V LKW27_05155 PF04002 RadC-like JAB domain LKW27_05160 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase LKW27_05165 PF02401 LytB protein LKW27_05170 PF01595 Cyclin M transmembrane N-terminal domain LKW27_05170 PF03471 Transporter associated domain LKW27_05170 PF00571 CBS domain LKW27_05175 PF01743 Poly A polymerase head domain LKW27_05175 PF02272 DHHA1 domain LKW27_05175 PF00571 CBS domain LKW27_05175 PF01368 DHH family LKW27_05180 PF00291 Pyridoxal-phosphate dependent enzyme LKW27_05180 PF13291 ACT domain LKW27_05185 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) LKW27_05185 PF02403 Seryl-tRNA synthetase N-terminal domain LKW27_05225 PF00990 Diguanylate cyclase, GGDEF domain LKW27_05225 PF00563 EAL domain LKW27_05225 PF03707 Bacterial signalling protein N terminal repeat LKW27_05240 PF00920 Dehydratase family LKW27_05245 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain LKW27_05255 PF00497 Bacterial extracellular solute-binding proteins, family 3 LKW27_05260 PF00528 Binding-protein-dependent transport system inner membrane component LKW27_05265 PF00528 Binding-protein-dependent transport system inner membrane component LKW27_05270 PF05193 Peptidase M16 inactive domain LKW27_05270 PF00675 Insulinase (Peptidase family M16) LKW27_05275 PF06715 Gp5 C-terminal repeat (3 copies) LKW27_05275 PF04717 Type VI secretion system, phage-baseplate injector LKW27_05275 PF06715 Gp5 C-terminal repeat (3 copies) LKW27_05275 PF04717 Type VI secretion system, phage-baseplate injector LKW27_05280 PF14220 Domain of unknown function (DUF4329) LKW27_05280 PF03527 RHS protein LKW27_05280 PF05593 RHS Repeat LKW27_05315 PF00654 Voltage gated chloride channel LKW27_05355 PF00012 Hsp70 protein LKW27_05360 PF00012 Hsp70 protein LKW27_05380 PF03621 MbtH-like protein LKW27_05385 PF00501 AMP-binding enzyme LKW27_05385 PF00550 Phosphopantetheine attachment site LKW27_05385 PF00975 Thioesterase domain LKW27_05385 PF00668 Condensation domain LKW27_05385 PF13193 AMP-binding enzyme C-terminal domain LKW27_05395 PF00550 Phosphopantetheine attachment site LKW27_05395 PF00501 AMP-binding enzyme LKW27_05395 PF00668 Condensation domain LKW27_05395 PF13193 AMP-binding enzyme C-terminal domain LKW27_05400 PF00698 Acyl transferase domain LKW27_05400 PF00668 Condensation domain LKW27_05400 PF16197 Ketoacyl-synthetase C-terminal extension LKW27_05400 PF00109 Beta-ketoacyl synthase, N-terminal domain LKW27_05400 PF02801 Beta-ketoacyl synthase, C-terminal domain LKW27_05400 PF00550 Phosphopantetheine attachment site LKW27_05405 PF00975 Thioesterase domain LKW27_05405 PF00550 Phosphopantetheine attachment site LKW27_05405 PF00668 Condensation domain LKW27_05405 PF13193 AMP-binding enzyme C-terminal domain LKW27_05405 PF00501 AMP-binding enzyme LKW27_05410 PF00550 Phosphopantetheine attachment site LKW27_05410 PF00668 Condensation domain LKW27_05410 PF13193 AMP-binding enzyme C-terminal domain LKW27_05410 PF00501 AMP-binding enzyme LKW27_05415 PF00975 Thioesterase domain LKW27_05415 PF00550 Phosphopantetheine attachment site LKW27_05415 PF00668 Condensation domain LKW27_05415 PF13193 AMP-binding enzyme C-terminal domain LKW27_05415 PF00501 AMP-binding enzyme LKW27_05420 PF07715 TonB-dependent Receptor Plug Domain LKW27_05420 PF00593 TonB dependent receptor LKW27_05430 PF00551 Formyl transferase LKW27_05440 PF00005 ABC transporter LKW27_05440 PF00664 ABC transporter transmembrane region LKW27_05445 PF13434 L-lysine 6-monooxygenase (NADPH-requiring) LKW27_05505 PF05593 RHS Repeat LKW27_05505 PF03527 RHS protein LKW27_05505 PF14220 Domain of unknown function (DUF4329) LKW27_05510 PF00579 tRNA synthetases class I (W and Y) LKW27_05515 PF02163 Peptidase family M50 LKW27_05525 PF01300 Telomere recombination LKW27_05530 PF02811 PHP domain LKW27_05535 PF07690 Major Facilitator Superfamily LKW27_05540 PF00155 Aminotransferase class I and II LKW27_05550 PF17768 RecJ OB domain LKW27_05550 PF01368 DHH family LKW27_05550 PF02272 DHHA1 domain LKW27_05560 PF12704 MacB-like periplasmic core domain LKW27_05560 PF02687 FtsX-like permease family LKW27_05565 PF00005 ABC transporter LKW27_05570 PF04166 Pyridoxal phosphate biosynthetic protein PdxA LKW27_05575 PF01741 Large-conductance mechanosensitive channel, MscL LKW27_05580 PF00355 Rieske [2Fe-2S] domain LKW27_05580 PF10399 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal LKW27_05585 PF00032 Cytochrome b(C-terminal)/b6/petD LKW27_05585 PF00033 Cytochrome b/b6/petB LKW27_05590 PF02167 Cytochrome C1 family LKW27_05595 PF00043 Glutathione S-transferase, C-terminal domain LKW27_05595 PF02798 Glutathione S-transferase, N-terminal domain LKW27_05600 PF04386 Stringent starvation protein B LKW27_05615 PF01476 LysM domain LKW27_05615 PF01551 Peptidase family M23 LKW27_05615 PF08525 Opacity-associated protein A N-terminal motif LKW27_05620 PF07516 SecA Wing and Scaffold domain LKW27_05620 PF02810 SEC-C motif LKW27_05620 PF07517 SecA DEAD-like domain LKW27_05620 PF01043 SecA preprotein cross-linking domain LKW27_05625 PF01960 ArgJ family LKW27_05635 PF00293 NUDIX domain LKW27_05640 PF03884 DNA gyrase inhibitor YacG LKW27_05645 PF07072 Cell division protein LKW27_05650 PF01121 Dephospho-CoA kinase LKW27_05655 PF06750 Bacterial Peptidase A24 N-terminal domain LKW27_05655 PF01478 Type IV leader peptidase family LKW27_05660 PF00482 Type II secretion system (T2SS), protein F LKW27_05665 PF00437 Type II/IV secretion system protein LKW27_05665 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain LKW27_05670 PF03466 LysR substrate binding domain LKW27_05670 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LKW27_05675 PF03401 Tripartite tricarboxylate transporter family receptor LKW27_05680 PF07687 Peptidase dimerisation domain LKW27_05680 PF01546 Peptidase family M20/M25/M40 LKW27_05690 PF00348 Polyprenyl synthetase LKW27_05695 PF00829 Ribosomal prokaryotic L21 protein LKW27_05700 PF01016 Ribosomal L27 protein LKW27_05705 PF01018 GTP1/OBG LKW27_05705 PF01926 50S ribosome-binding GTPase LKW27_05710 PF00696 Amino acid kinase family LKW27_05710 PF01472 PUA domain LKW27_05715 PF00293 NUDIX domain LKW27_05720 PF03129 Anticodon binding domain LKW27_05720 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) LKW27_05720 PF04073 Aminoacyl-tRNA editing domain LKW27_05725 PF11873 Membrane-bound lytic murein transglycosylase C, N-terminal domain LKW27_05725 PF01464 Transglycosylase SLT domain LKW27_05730 PF00571 CBS domain LKW27_05730 PF03471 Transporter associated domain LKW27_05730 PF01595 Cyclin M transmembrane N-terminal domain LKW27_05735 PF00004 ATPase family associated with various cellular activities (AAA) LKW27_05735 PF05362 Lon protease (S16) C-terminal proteolytic domain LKW27_05735 PF02190 ATP-dependent protease La (LON) substrate-binding domain LKW27_05740 PF00462 Glutaredoxin LKW27_05745 PF05175 Methyltransferase small domain LKW27_05745 PF17827 PrmC N-terminal domain LKW27_05750 PF00472 RF-1 domain LKW27_05750 PF03462 PCRF domain LKW27_05755 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain LKW27_05755 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain LKW27_05755 PF01488 Shikimate / quinate 5-dehydrogenase LKW27_05785 PF03401 Tripartite tricarboxylate transporter family receptor LKW27_05790 PF12795 Mechanosensitive ion channel porin domain LKW27_05790 PF00924 Mechanosensitive ion channel LKW27_05790 PF12794 Mechanosensitive ion channel inner membrane domain 1 LKW27_05795 PF03009 Glycerophosphoryl diester phosphodiesterase family LKW27_05805 PF00005 ABC transporter LKW27_05805 PF17912 MalK OB fold domain LKW27_05810 PF00528 Binding-protein-dependent transport system inner membrane component LKW27_05815 PF00528 Binding-protein-dependent transport system inner membrane component LKW27_05820 PF13416 Bacterial extracellular solute-binding protein LKW27_05825 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain LKW27_05825 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain LKW27_05840 PF00990 Diguanylate cyclase, GGDEF domain LKW27_05850 PF01209 ubiE/COQ5 methyltransferase family LKW27_05865 PF03109 ABC1 family LKW27_05885 PF01336 OB-fold nucleic acid binding domain LKW27_05885 PF00152 tRNA synthetases class II (D, K and N) LKW27_05885 PF02938 GAD domain LKW27_05895 PF00293 NUDIX domain LKW27_05900 PF00072 Response regulator receiver domain LKW27_05910 PF13091 PLD-like domain LKW27_05915 PF01227 GTP cyclohydrolase I LKW27_05945 PF00356 Bacterial regulatory proteins, lacI family LKW27_05945 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family LKW27_05950 PF03401 Tripartite tricarboxylate transporter family receptor LKW27_05955 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain LKW27_05955 PF13378 Enolase C-terminal domain-like LKW27_05975 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle LKW27_05985 PF08352 Oligopeptide/dipeptide transporter, C-terminal region LKW27_05985 PF00005 ABC transporter LKW27_05990 PF00005 ABC transporter LKW27_05990 PF08352 Oligopeptide/dipeptide transporter, C-terminal region LKW27_05995 PF00528 Binding-protein-dependent transport system inner membrane component LKW27_05995 PF12911 N-terminal TM domain of oligopeptide transport permease C LKW27_06000 PF00528 Binding-protein-dependent transport system inner membrane component LKW27_06005 PF00037 4Fe-4S binding domain LKW27_06010 PF01195 Peptidyl-tRNA hydrolase LKW27_06015 PF01386 Ribosomal L25p family LKW27_06015 PF14693 Ribosomal protein TL5, C-terminal domain LKW27_06020 PF14572 Phosphoribosyl synthetase-associated domain LKW27_06020 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase LKW27_06030 PF00288 GHMP kinases N terminal domain LKW27_06030 PF08544 GHMP kinases C terminal LKW27_06045 PF06827 Zinc finger found in FPG and IleRS LKW27_06045 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain LKW27_06045 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain LKW27_06055 PF14815 NUDIX domain LKW27_06055 PF10576 Iron-sulfur binding domain of endonuclease III LKW27_06055 PF00633 Helix-hairpin-helix motif LKW27_06055 PF00730 HhH-GPD superfamily base excision DNA repair protein LKW27_06060 PF03668 P-loop ATPase protein family LKW27_06065 PF02463 RecF/RecN/SMC N terminal domain LKW27_06070 PF01513 ATP-NAD kinase LKW27_06135 PF00239 Resolvase, N terminal domain LKW27_06135 PF02796 Helix-turn-helix domain of resolvase LKW27_06140 PF03444 Winged helix-turn-helix transcription repressor, HrcA DNA-binding LKW27_06140 PF01628 HrcA protein C terminal domain LKW27_06150 PF00072 Response regulator receiver domain LKW27_06150 PF00196 Bacterial regulatory proteins, luxR family LKW27_06155 PF03422 Carbohydrate binding module (family 6) LKW27_06155 PF00331 Glycosyl hydrolase family 10 LKW27_06155 PF00553 Cellulose binding domain LKW27_06180 PF03449 Transcription elongation factor, N-terminal LKW27_06180 PF01272 Transcription elongation factor, GreA/GreB, C-term LKW27_06185 PF02824 TGS domain LKW27_06185 PF13291 ACT domain LKW27_06185 PF04607 Region found in RelA / SpoT proteins LKW27_06190 PF01192 RNA polymerase Rpb6 LKW27_06195 PF00625 Guanylate kinase LKW27_06200 PF03755 YicC-like family, N-terminal region LKW27_06200 PF08340 Domain of unknown function (DUF1732) LKW27_06205 PF03793 PASTA domain LKW27_06205 PF00069 Protein kinase domain LKW27_06215 PF03725 3' exoribonuclease family, domain 2 LKW27_06215 PF01138 3' exoribonuclease family, domain 1 LKW27_06220 PF01725 Ham1 family LKW27_06225 PF06969 HemN C-terminal domain LKW27_06225 PF04055 Radical SAM superfamily LKW27_06240 PF00106 short chain dehydrogenase LKW27_06260 PF04545 Sigma-70, region 4 LKW27_06260 PF04542 Sigma-70 region 2 LKW27_06290 PF13426 PAS domain LKW27_06290 PF00072 Response regulator receiver domain LKW27_06290 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LKW27_06325 PF00115 Cytochrome C and Quinol oxidase polypeptide I LKW27_06335 PF01872 RibD C-terminal domain LKW27_06335 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region LKW27_06355 PF05567 Neisseria PilC beta-propeller domain LKW27_06360 PF07963 Prokaryotic N-terminal methylation motif LKW27_06360 PF14245 Type IV pilin PilA LKW27_06365 PF07963 Prokaryotic N-terminal methylation motif LKW27_06365 PF14245 Type IV pilin PilA LKW27_06370 PF00072 Response regulator receiver domain LKW27_06370 PF01339 CheB methylesterase LKW27_06380 PF01739 CheR methyltransferase, SAM binding domain LKW27_06380 PF03705 CheR methyltransferase, all-alpha domain LKW27_06390 PF08240 Alcohol dehydrogenase GroES-like domain LKW27_06390 PF00107 Zinc-binding dehydrogenase LKW27_06400 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LKW27_06400 PF00512 His Kinase A (phospho-acceptor) domain LKW27_06405 PF02525 Flavodoxin-like fold LKW27_06420 PF00004 ATPase family associated with various cellular activities (AAA) LKW27_06435 PF02492 CobW/HypB/UreG, nucleotide-binding domain LKW27_06440 PF01730 UreF LKW27_06445 PF02814 UreE urease accessory protein, N-terminal domain LKW27_06445 PF05194 UreE urease accessory protein, C-terminal domain LKW27_06455 PF00449 Urease alpha-subunit, N-terminal domain LKW27_06455 PF01979 Amidohydrolase family LKW27_06460 PF00699 Urease beta subunit LKW27_06470 PF00547 Urease, gamma subunit LKW27_06475 PF01627 Hpt domain LKW27_06475 PF00072 Response regulator receiver domain LKW27_06475 PF00512 His Kinase A (phospho-acceptor) domain LKW27_06475 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LKW27_06480 PF00072 Response regulator receiver domain LKW27_06485 PF08448 PAS fold LKW27_06485 PF08447 PAS fold LKW27_06485 PF00990 Diguanylate cyclase, GGDEF domain LKW27_06485 PF00563 EAL domain LKW27_06505 PF01070 FMN-dependent dehydrogenase LKW27_06510 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LKW27_06510 PF00672 HAMP domain LKW27_06510 PF00512 His Kinase A (phospho-acceptor) domain LKW27_06515 PF01494 FAD binding domain LKW27_06530 PF07690 Major Facilitator Superfamily LKW27_06535 PF03746 LamB/YcsF family LKW27_06540 PF07286 Protein of unknown function (DUF1445) LKW27_06545 PF02682 Carboxyltransferase domain, subdomain C and D LKW27_06550 PF00289 Biotin carboxylase, N-terminal domain LKW27_06550 PF02785 Biotin carboxylase C-terminal domain LKW27_06550 PF00364 Biotin-requiring enzyme LKW27_06550 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain LKW27_06560 PF01292 Prokaryotic cytochrome b561 LKW27_06585 PF00375 Sodium:dicarboxylate symporter family LKW27_06590 PF13458 Periplasmic binding protein LKW27_06595 PF02653 Branched-chain amino acid transport system / permease component LKW27_06600 PF02653 Branched-chain amino acid transport system / permease component LKW27_06605 PF12399 Branched-chain amino acid ATP-binding cassette transporter LKW27_06605 PF00005 ABC transporter LKW27_06610 PF00005 ABC transporter LKW27_06630 PF07690 Major Facilitator Superfamily LKW27_06640 PF00781 Diacylglycerol kinase catalytic domain LKW27_06655 PF03707 Bacterial signalling protein N terminal repeat LKW27_06655 PF00990 Diguanylate cyclase, GGDEF domain LKW27_06655 PF00563 EAL domain LKW27_06660 PF06715 Gp5 C-terminal repeat (3 copies) LKW27_06660 PF04717 Type VI secretion system, phage-baseplate injector LKW27_06685 PF05593 RHS Repeat LKW27_06685 PF03527 RHS protein LKW27_06685 PF05593 RHS Repeat LKW27_06685 PF03527 RHS protein LKW27_06730 PF00892 EamA-like transporter family LKW27_06735 PF08240 Alcohol dehydrogenase GroES-like domain LKW27_06735 PF00107 Zinc-binding dehydrogenase LKW27_06750 PF13593 SBF-like CPA transporter family (DUF4137) LKW27_06765 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LKW27_06765 PF03466 LysR substrate binding domain LKW27_06780 PF02690 Na+/Pi-cotransporter LKW27_06790 PF00149 Calcineurin-like phosphoesterase LKW27_06795 PF03459 TOBE domain LKW27_06795 PF00005 ABC transporter LKW27_06805 PF00528 Binding-protein-dependent transport system inner membrane component LKW27_06810 PF00528 Binding-protein-dependent transport system inner membrane component LKW27_06820 PF00356 Bacterial regulatory proteins, lacI family LKW27_06835 PF01252 Signal peptidase (SPase) II LKW27_06840 PF08264 Anticodon-binding domain of tRNA LKW27_06840 PF00133 tRNA synthetases class I (I, L, M and V) LKW27_06840 PF06827 Zinc finger found in FPG and IleRS LKW27_06845 PF06574 FAD synthetase LKW27_06845 PF01687 Riboflavin kinase LKW27_06855 PF03480 Bacterial extracellular solute-binding protein, family 7 LKW27_06865 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component LKW27_06880 PF00041 Fibronectin type III domain LKW27_06880 PF00704 Glycosyl hydrolases family 18 LKW27_06880 PF00553 Cellulose binding domain LKW27_06890 PF00441 Acyl-CoA dehydrogenase, C-terminal domain LKW27_06890 PF02770 Acyl-CoA dehydrogenase, middle domain LKW27_06890 PF02771 Acyl-CoA dehydrogenase, N-terminal domain LKW27_06895 PF00441 Acyl-CoA dehydrogenase, C-terminal domain LKW27_06895 PF02770 Acyl-CoA dehydrogenase, middle domain LKW27_06895 PF02771 Acyl-CoA dehydrogenase, N-terminal domain LKW27_06900 PF04337 Protein of unknown function, DUF480 LKW27_06905 PF00551 Formyl transferase LKW27_06920 PF00544 Pectate lyase LKW27_06925 PF01189 16S rRNA methyltransferase RsmB/F LKW27_06925 PF01029 NusB family LKW27_06940 PF00392 Bacterial regulatory proteins, gntR family LKW27_06940 PF00155 Aminotransferase class I and II LKW27_06945 PF00471 Ribosomal protein L33 LKW27_06950 PF00830 Ribosomal L28 family LKW27_06955 PF07992 Pyridine nucleotide-disulphide oxidoreductase LKW27_06960 PF13491 4TM region of DNA translocase FtsK/SpoIIIE LKW27_06960 PF17854 FtsK alpha domain LKW27_06960 PF09397 Ftsk gamma domain LKW27_06960 PF01580 FtsK/SpoIIIE family LKW27_06965 PF03548 Outer membrane lipoprotein carrier protein LolA LKW27_06975 PF03167 Uracil DNA glycosylase superfamily LKW27_06980 PF12002 MgsA AAA+ ATPase C terminal LKW27_06980 PF16193 AAA C-terminal domain LKW27_06980 PF00004 ATPase family associated with various cellular activities (AAA) LKW27_06985 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LKW27_06985 PF02203 Tar ligand binding domain homologue LKW27_06985 PF00672 HAMP domain LKW27_06990 PF02653 Branched-chain amino acid transport system / permease component LKW27_06995 PF11862 Domain of unknown function (DUF3382) LKW27_06995 PF02653 Branched-chain amino acid transport system / permease component LKW27_07000 PF00005 ABC transporter LKW27_07000 PF12399 Branched-chain amino acid ATP-binding cassette transporter LKW27_07005 PF00005 ABC transporter LKW27_07010 PF00691 OmpA family LKW27_07010 PF01389 OmpA-like transmembrane domain LKW27_07015 PF01865 Protein of unknown function DUF47 LKW27_07020 PF01384 Phosphate transporter family LKW27_07035 PF00886 Ribosomal protein S16 LKW27_07040 PF05239 PRC-barrel domain LKW27_07040 PF01782 RimM N-terminal domain LKW27_07045 PF01746 tRNA (Guanine-1)-methyltransferase LKW27_07050 PF01245 Ribosomal protein L19 LKW27_07055 PF00293 NUDIX domain LKW27_07060 PF17113 Regulatory signalling modulator protein AmpE LKW27_07060 PF03186 CobD/Cbib protein LKW27_07065 PF03193 RsgA GTPase LKW27_07070 PF01329 Pterin 4 alpha carbinolamine dehydratase LKW27_07075 PF01435 Peptidase family M48 LKW27_07080 PF00929 Exonuclease LKW27_07085 PF00270 DEAD/DEAH box helicase LKW27_07085 PF00271 Helicase conserved C-terminal domain LKW27_07090 PF13426 PAS domain LKW27_07090 PF00563 EAL domain LKW27_07090 PF00990 Diguanylate cyclase, GGDEF domain LKW27_07090 PF05231 MASE1 LKW27_07090 PF08447 PAS fold LKW27_07090 PF08448 PAS fold LKW27_07095 PF07690 Major Facilitator Superfamily LKW27_07110 PF00309 Sigma-54 factor, Activator interacting domain (AID) LKW27_07110 PF04963 Sigma-54 factor, core binding domain LKW27_07110 PF04552 Sigma-54, DNA binding domain LKW27_07115 PF00989 PAS fold LKW27_07115 PF00512 His Kinase A (phospho-acceptor) domain LKW27_07115 PF16736 Single Cache-like LKW27_07115 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LKW27_07120 PF00158 Sigma-54 interaction domain LKW27_07120 PF00072 Response regulator receiver domain LKW27_07120 PF02954 Bacterial regulatory protein, Fis family LKW27_07170 PF00478 IMP dehydrogenase / GMP reductase domain LKW27_07180 PF03401 Tripartite tricarboxylate transporter family receptor LKW27_07185 PF07687 Peptidase dimerisation domain LKW27_07185 PF01546 Peptidase family M20/M25/M40 LKW27_07195 PF00580 UvrD/REP helicase N-terminal domain LKW27_07195 PF13361 UvrD-like helicase C-terminal domain LKW27_07255 PF01636 Phosphotransferase enzyme family LKW27_07265 PF01612 3'-5' exonuclease LKW27_07265 PF00476 DNA polymerase family A LKW27_07265 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain LKW27_07265 PF01367 5'-3' exonuclease, C-terminal SAM fold LKW27_07290 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LKW27_07290 PF03466 LysR substrate binding domain LKW27_07295 PF01266 FAD dependent oxidoreductase LKW27_07300 PF00497 Bacterial extracellular solute-binding proteins, family 3 LKW27_07330 PF01738 Dienelactone hydrolase family LKW27_07340 PF00206 Lyase LKW27_07340 PF14698 Argininosuccinate lyase C-terminal LKW27_07345 PF00072 Response regulator receiver domain LKW27_07345 PF04397 LytTr DNA-binding domain LKW27_07350 PF07694 5TMR of 5TMR-LYT LKW27_07350 PF06580 Histidine kinase LKW27_07355 PF00206 Lyase LKW27_07355 PF14698 Argininosuccinate lyase C-terminal LKW27_07360 PF03401 Tripartite tricarboxylate transporter family receptor LKW27_07390 PF02203 Tar ligand binding domain homologue LKW27_07390 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LKW27_07390 PF00672 HAMP domain LKW27_07395 PF00912 Transglycosylase LKW27_07395 PF00905 Penicillin binding protein transpeptidase domain LKW27_07395 PF14814 Bifunctional transglycosylase second domain LKW27_07405 PF01070 FMN-dependent dehydrogenase LKW27_07410 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LKW27_07410 PF02203 Tar ligand binding domain homologue LKW27_07410 PF00672 HAMP domain LKW27_07430 PF00817 impB/mucB/samB family LKW27_07430 PF11799 impB/mucB/samB family C-terminal domain LKW27_07435 PF01965 DJ-1/PfpI family LKW27_07440 PF01965 DJ-1/PfpI family LKW27_07455 PF00586 AIR synthase related protein, N-terminal domain LKW27_07455 PF02769 AIR synthase related protein, C-terminal domain LKW27_07460 PF00308 Bacterial dnaA protein LKW27_07470 PF12627 Probable RNA and SrmB- binding site of polymerase A LKW27_07470 PF01743 Poly A polymerase head domain LKW27_07470 PF12626 Polymerase A arginine-rich C-terminus LKW27_07475 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) LKW27_07480 PF03401 Tripartite tricarboxylate transporter family receptor LKW27_07490 PF00111 2Fe-2S iron-sulfur cluster binding domain LKW27_07490 PF00970 Oxidoreductase FAD-binding domain LKW27_07490 PF00175 Oxidoreductase NAD-binding domain LKW27_07510 PF02515 CoA-transferase family III LKW27_07515 PF02770 Acyl-CoA dehydrogenase, middle domain LKW27_07515 PF00441 Acyl-CoA dehydrogenase, C-terminal domain LKW27_07515 PF02771 Acyl-CoA dehydrogenase, N-terminal domain LKW27_07520 PF03466 LysR substrate binding domain LKW27_07520 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LKW27_07560 PF00291 Pyridoxal-phosphate dependent enzyme LKW27_07565 PF00293 NUDIX domain LKW27_07565 PF09296 NADH pyrophosphatase-like rudimentary NUDIX domain LKW27_07565 PF09297 NADH pyrophosphatase zinc ribbon domain LKW27_07570 PF01206 Sulfurtransferase TusA LKW27_07580 PF00483 Nucleotidyl transferase LKW27_07585 PF08264 Anticodon-binding domain of tRNA LKW27_07585 PF00133 tRNA synthetases class I (I, L, M and V) LKW27_07585 PF10458 Valyl tRNA synthetase tRNA binding arm LKW27_07590 PF01435 Peptidase family M48 LKW27_07600 PF00005 ABC transporter LKW27_07600 PF12848 ABC transporter LKW27_07620 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain LKW27_07620 PF03900 Porphobilinogen deaminase, C-terminal domain LKW27_07625 PF00311 Phosphoenolpyruvate carboxylase LKW27_07630 PF12805 FUSC-like inner membrane protein yccS LKW27_07635 PF01594 AI-2E family transporter LKW27_07650 PF05280 Flagellar transcriptional activator (FlhC) LKW27_07655 PF05247 Flagellar transcriptional activator (FlhD) LKW27_07665 PF02771 Acyl-CoA dehydrogenase, N-terminal domain LKW27_07665 PF02770 Acyl-CoA dehydrogenase, middle domain LKW27_07665 PF08028 Acyl-CoA dehydrogenase, C-terminal domain LKW27_07670 PF02771 Acyl-CoA dehydrogenase, N-terminal domain LKW27_07670 PF08028 Acyl-CoA dehydrogenase, C-terminal domain LKW27_07675 PF00581 Rhodanese-like domain LKW27_07685 PF00848 Ring hydroxylating alpha subunit (catalytic domain) LKW27_07685 PF00355 Rieske [2Fe-2S] domain LKW27_07690 PF02609 Exonuclease VII small subunit LKW27_07695 PF00348 Polyprenyl synthetase LKW27_07700 PF13292 1-deoxy-D-xylulose-5-phosphate synthase LKW27_07700 PF02779 Transketolase, pyrimidine binding domain LKW27_07700 PF02780 Transketolase, C-terminal domain LKW27_07705 PF03480 Bacterial extracellular solute-binding protein, family 7 LKW27_07715 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component LKW27_07725 PF05552 Conserved TM helix LKW27_07730 PF00128 Alpha amylase, catalytic domain LKW27_07730 PF16657 Maltogenic Amylase, C-terminal domain LKW27_07735 PF00128 Alpha amylase, catalytic domain LKW27_07735 PF11896 Domain of unknown function (DUF3416) LKW27_07740 PF00128 Alpha amylase, catalytic domain LKW27_07740 PF02806 Alpha amylase, C-terminal all-beta domain LKW27_07740 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) LKW27_07745 PF02028 BCCT, betaine/carnitine/choline family transporter LKW27_07750 PF03459 TOBE domain LKW27_07750 PF00005 ABC transporter LKW27_07755 PF00528 Binding-protein-dependent transport system inner membrane component LKW27_07770 PF03459 TOBE domain LKW27_07770 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LKW27_07780 PF00005 ABC transporter LKW27_07790 PF01810 LysE type translocator LKW27_07795 PF00072 Response regulator receiver domain LKW27_07795 PF04397 LytTr DNA-binding domain LKW27_07800 PF07694 5TMR of 5TMR-LYT LKW27_07800 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LKW27_07800 PF06580 Histidine kinase LKW27_07810 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion LKW27_07815 PF00873 AcrB/AcrD/AcrF family LKW27_07820 PF00873 AcrB/AcrD/AcrF family LKW27_07825 PF02321 Outer membrane efflux protein LKW27_07830 PF02673 Bacitracin resistance protein BacA LKW27_07835 PF05231 MASE1 LKW27_07835 PF00563 EAL domain LKW27_07835 PF08447 PAS fold LKW27_07835 PF00990 Diguanylate cyclase, GGDEF domain LKW27_07835 PF13426 PAS domain LKW27_07835 PF08448 PAS fold LKW27_07855 PF06715 Gp5 C-terminal repeat (3 copies) LKW27_07855 PF04717 Type VI secretion system, phage-baseplate injector LKW27_07860 PF05593 RHS Repeat LKW27_07860 PF03527 RHS protein LKW27_07860 PF14220 Domain of unknown function (DUF4329) LKW27_07880 PF01624 MutS domain I LKW27_07880 PF00488 MutS domain V LKW27_07880 PF05188 MutS domain II LKW27_07880 PF05192 MutS domain III LKW27_07880 PF05190 MutS family domain IV LKW27_07890 PF00593 TonB dependent receptor LKW27_07890 PF07715 TonB-dependent Receptor Plug Domain LKW27_07935 PF00072 Response regulator receiver domain LKW27_07935 PF00672 HAMP domain LKW27_07935 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) LKW27_07935 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LKW27_07935 PF01627 Hpt domain LKW27_07935 PF00512 His Kinase A (phospho-acceptor) domain LKW27_07940 PF00072 Response regulator receiver domain LKW27_07950 PF00005 ABC transporter LKW27_07970 PF00459 Inositol monophosphatase family LKW27_07985 PF00005 ABC transporter LKW27_07990 PF00982 Glycosyltransferase family 20 LKW27_07995 PF00588 SpoU rRNA Methylase family LKW27_08000 PF00132 Bacterial transferase hexapeptide (six repeats) LKW27_08005 PF00994 Probable molybdopterin binding domain LKW27_08010 PF04751 Protein of unknown function (DUF615) LKW27_08015 PF01523 Putative modulator of DNA gyrase LKW27_08020 PF03328 HpcH/HpaI aldolase/citrate lyase family LKW27_08025 PF00171 Aldehyde dehydrogenase family LKW27_08030 PF08666 SAF domain LKW27_08030 PF04295 D-galactarate dehydratase / Altronate hydrolase, C terminus LKW27_08035 PF03401 Tripartite tricarboxylate transporter family receptor LKW27_08040 PF03466 LysR substrate binding domain LKW27_08040 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LKW27_08045 PF07690 Major Facilitator Superfamily LKW27_08050 PF01734 Patatin-like phospholipase LKW27_08055 PF00180 Isocitrate/isopropylmalate dehydrogenase LKW27_08060 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LKW27_08060 PF03466 LysR substrate binding domain LKW27_08070 PF00043 Glutathione S-transferase, C-terminal domain LKW27_08070 PF02798 Glutathione S-transferase, N-terminal domain LKW27_08075 PF09424 Yqey-like protein LKW27_08080 PF01165 Ribosomal protein S21 LKW27_08120 PF00484 Carbonic anhydrase LKW27_08125 PF03061 Thioesterase superfamily LKW27_08130 PF00150 Cellulase (glycosyl hydrolase family 5) LKW27_08130 PF00553 Cellulose binding domain LKW27_08135 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases LKW27_08140 PF02885 Glycosyl transferase family, helical bundle domain LKW27_08140 PF00591 Glycosyl transferase family, a/b domain LKW27_08145 PF00384 Molybdopterin oxidoreductase LKW27_08145 PF01568 Molydopterin dinucleotide binding domain LKW27_08145 PF04879 Molybdopterin oxidoreductase Fe4S4 domain LKW27_08150 PF00355 Rieske [2Fe-2S] domain LKW27_08155 PF18267 Rubredoxin NAD+ reductase C-terminal domain LKW27_08155 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain LKW27_08155 PF04324 BFD-like [2Fe-2S] binding domain LKW27_08155 PF07992 Pyridine nucleotide-disulphide oxidoreductase LKW27_08155 PF01077 Nitrite and sulphite reductase 4Fe-4S domain LKW27_08160 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LKW27_08160 PF02203 Tar ligand binding domain homologue LKW27_08160 PF00672 HAMP domain LKW27_08170 PF02321 Outer membrane efflux protein LKW27_08175 PF00873 AcrB/AcrD/AcrF family LKW27_08180 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion LKW27_08180 PF00529 HlyD membrane-fusion protein of T1SS LKW27_08185 PF08447 PAS fold LKW27_08185 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LKW27_08190 PF00478 IMP dehydrogenase / GMP reductase domain LKW27_08190 PF00571 CBS domain LKW27_08195 PF01204 Trehalase LKW27_08205 PF02463 RecF/RecN/SMC N terminal domain LKW27_08210 PF01627 Hpt domain LKW27_08210 PF01584 CheW-like domain LKW27_08210 PF07194 P2 response regulator binding domain LKW27_08210 PF02895 Signal transducing histidine kinase, homodimeric domain LKW27_08210 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LKW27_08215 PF00672 HAMP domain LKW27_08215 PF16591 Helical bimodular sensor domain LKW27_08215 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LKW27_08225 PF00072 Response regulator receiver domain LKW27_08240 PF07690 Major Facilitator Superfamily LKW27_08245 PF00456 Transketolase, thiamine diphosphate binding domain LKW27_08250 PF02779 Transketolase, pyrimidine binding domain LKW27_08250 PF02780 Transketolase, C-terminal domain LKW27_08255 PF00625 Guanylate kinase LKW27_08270 PF07722 Peptidase C26 LKW27_08275 PF00106 short chain dehydrogenase LKW27_08285 PF01053 Cys/Met metabolism PLP-dependent enzyme LKW27_08295 PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) LKW27_08310 PF01872 RibD C-terminal domain LKW27_08315 PF00005 ABC transporter LKW27_08320 PF00528 Binding-protein-dependent transport system inner membrane component LKW27_08340 PF00072 Response regulator receiver domain LKW27_08340 PF03861 ANTAR domain LKW27_08345 PF13458 Periplasmic binding protein LKW27_08350 PF00814 Glycoprotease family LKW27_08365 PF13458 Periplasmic binding protein LKW27_08385 PF07690 Major Facilitator Superfamily LKW27_08395 PF13406 Transglycosylase SLT domain LKW27_08400 PF11992 Domain of unknown function (DUF3488) LKW27_08400 PF13559 Domain of unknown function (DUF4129) LKW27_08400 PF01841 Transglutaminase-like superfamily LKW27_08410 PF07726 ATPase family associated with various cellular activities (AAA) LKW27_08410 PF17863 AAA lid domain LKW27_08415 PF00850 Histone deacetylase domain LKW27_08420 PF00378 Enoyl-CoA hydratase/isomerase LKW27_08435 PF12795 Mechanosensitive ion channel porin domain LKW27_08435 PF12794 Mechanosensitive ion channel inner membrane domain 1 LKW27_08435 PF00924 Mechanosensitive ion channel LKW27_08440 PF01012 Electron transfer flavoprotein domain LKW27_08445 PF00766 Electron transfer flavoprotein FAD-binding domain LKW27_08445 PF01012 Electron transfer flavoprotein domain LKW27_08450 PF00441 Acyl-CoA dehydrogenase, C-terminal domain LKW27_08450 PF12806 Acetyl-CoA dehydrogenase C-terminal like LKW27_08450 PF02770 Acyl-CoA dehydrogenase, middle domain LKW27_08450 PF02771 Acyl-CoA dehydrogenase, N-terminal domain LKW27_08480 PF04055 Radical SAM superfamily LKW27_08495 PF01546 Peptidase family M20/M25/M40 LKW27_08495 PF07687 Peptidase dimerisation domain LKW27_08500 PF01037 Lrp/AsnC ligand binding domain LKW27_08505 PF00202 Aminotransferase class-III LKW27_08510 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain LKW27_08530 PF01266 FAD dependent oxidoreductase LKW27_08540 PF00528 Binding-protein-dependent transport system inner membrane component LKW27_08545 PF00528 Binding-protein-dependent transport system inner membrane component LKW27_08545 PF12911 N-terminal TM domain of oligopeptide transport permease C LKW27_08550 PF00005 ABC transporter LKW27_08550 PF08352 Oligopeptide/dipeptide transporter, C-terminal region LKW27_08555 PF00180 Isocitrate/isopropylmalate dehydrogenase LKW27_08560 PF00171 Aldehyde dehydrogenase family LKW27_08565 PF00884 Sulfatase LKW27_08565 PF08019 Phosphoethanolamine transferase EptA/EptB LKW27_08570 PF00756 Putative esterase LKW27_08575 PF08240 Alcohol dehydrogenase GroES-like domain LKW27_08575 PF00107 Zinc-binding dehydrogenase LKW27_08580 PF01965 DJ-1/PfpI family LKW27_08580 PF12833 Helix-turn-helix domain LKW27_08585 PF13302 Acetyltransferase (GNAT) domain LKW27_08600 PF00285 Citrate synthase, C-terminal domain LKW27_08605 PF03937 Flavinator of succinate dehydrogenase LKW27_08610 PF13085 2Fe-2S iron-sulfur cluster binding domain LKW27_08615 PF00890 FAD binding domain LKW27_08615 PF02910 Fumarate reductase flavoprotein C-term LKW27_08630 PF00392 Bacterial regulatory proteins, gntR family LKW27_08630 PF07702 UTRA domain LKW27_08635 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain LKW27_08635 PF00056 lactate/malate dehydrogenase, NAD binding domain LKW27_08640 PF13649 Methyltransferase domain LKW27_08655 PF11791 Aconitate B N-terminal domain LKW27_08655 PF00330 Aconitase family (aconitate hydratase) LKW27_08655 PF06434 Aconitate hydratase 2 N-terminus LKW27_08660 PF05992 SbmA/BacA-like family LKW27_08675 PF01136 Peptidase family U32 LKW27_08675 PF16325 Peptidase family U32 C-terminal domain LKW27_08680 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LKW27_08680 PF03466 LysR substrate binding domain LKW27_08690 PF00072 Response regulator receiver domain LKW27_08695 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LKW27_08695 PF00989 PAS fold LKW27_08705 PF03626 Prokaryotic Cytochrome C oxidase subunit IV LKW27_08710 PF00510 Cytochrome c oxidase subunit III LKW27_08715 PF00115 Cytochrome C and Quinol oxidase polypeptide I LKW27_08720 PF06481 COX Aromatic Rich Motif LKW27_08720 PF00116 Cytochrome C oxidase subunit II, periplasmic domain LKW27_08725 PF00083 Sugar (and other) transporter LKW27_08725 PF07690 Major Facilitator Superfamily LKW27_08735 PF02472 Biopolymer transport protein ExbD/TolR LKW27_08740 PF01618 MotA/TolQ/ExbB proton channel family LKW27_08745 PF03061 Thioesterase superfamily LKW27_08750 PF00155 Aminotransferase class I and II LKW27_08755 PF01029 NusB family LKW27_08760 PF00885 6,7-dimethyl-8-ribityllumazine synthase LKW27_08765 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase LKW27_08765 PF00925 GTP cyclohydrolase II LKW27_08785 PF00989 PAS fold LKW27_08785 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LKW27_08785 PF00512 His Kinase A (phospho-acceptor) domain LKW27_08795 PF00486 Transcriptional regulatory protein, C terminal LKW27_08795 PF00072 Response regulator receiver domain LKW27_08800 PF00072 Response regulator receiver domain LKW27_08800 PF01339 CheB methylesterase LKW27_08810 PF00672 HAMP domain LKW27_08810 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LKW27_08810 PF02203 Tar ligand binding domain homologue LKW27_08825 PF13378 Enolase C-terminal domain-like LKW27_08825 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain LKW27_08830 PF01081 KDPG and KHG aldolase LKW27_08835 PF05035 2-keto-3-deoxy-galactonokinase LKW27_08840 PF00701 Dihydrodipicolinate synthetase family LKW27_08845 PF00920 Dehydratase family LKW27_08850 PF02653 Branched-chain amino acid transport system / permease component LKW27_08855 PF02653 Branched-chain amino acid transport system / permease component LKW27_08860 PF00005 ABC transporter LKW27_08865 PF02653 Branched-chain amino acid transport system / permease component LKW27_08870 PF00005 ABC transporter LKW27_08875 PF13407 Periplasmic binding protein domain LKW27_08880 PF13407 Periplasmic binding protein domain LKW27_08885 PF00171 Aldehyde dehydrogenase family LKW27_08890 PF03466 LysR substrate binding domain LKW27_08890 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LKW27_08900 PF08450 SMP-30/Gluconolactonase/LRE-like region LKW27_08910 PF04262 Glutamate-cysteine ligase LKW27_08915 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain LKW27_08915 PF00205 Thiamine pyrophosphate enzyme, central domain LKW27_08915 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain LKW27_08920 PF02463 RecF/RecN/SMC N terminal domain LKW27_08930 PF01810 LysE type translocator LKW27_08935 PF00512 His Kinase A (phospho-acceptor) domain LKW27_08935 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LKW27_08950 PF01926 50S ribosome-binding GTPase LKW27_08955 PF13609 Gram-negative porin LKW27_08970 PF07690 Major Facilitator Superfamily LKW27_08980 PF00376 MerR family regulatory protein LKW27_08980 PF09278 MerR, DNA binding LKW27_08985 PF02308 MgtC family LKW27_08990 PF00849 RNA pseudouridylate synthase LKW27_09015 PF01547 Bacterial extracellular solute-binding protein LKW27_09020 PF02203 Tar ligand binding domain homologue LKW27_09020 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LKW27_09020 PF00672 HAMP domain LKW27_09040 PF00849 RNA pseudouridylate synthase LKW27_09050 PF13396 Phospholipase_D-nuclease N-terminal LKW27_09050 PF13091 PLD-like domain LKW27_09090 PF00440 Bacterial regulatory proteins, tetR family LKW27_09090 PF17932 Tetracyclin repressor-like, C-terminal domain LKW27_09105 PF00749 tRNA synthetases class I (E and Q), catalytic domain LKW27_09105 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain LKW27_09115 PF01220 Dehydroquinase class II LKW27_09125 PF00472 RF-1 domain LKW27_09130 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase LKW27_09150 PF01037 Lrp/AsnC ligand binding domain LKW27_09160 PF03466 LysR substrate binding domain LKW27_09160 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LKW27_09165 PF03401 Tripartite tricarboxylate transporter family receptor LKW27_09175 PF06167 Glucose-regulated metallo-peptidase M90 LKW27_09180 PF00149 Calcineurin-like phosphoesterase LKW27_09185 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD LKW27_09190 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD LKW27_09205 PF09190 DALR domain LKW27_09205 PF01406 tRNA synthetases class I (C) catalytic domain LKW27_09210 PF02805 Metal binding domain of Ada LKW27_09210 PF06029 AlkA N-terminal domain LKW27_09210 PF00730 HhH-GPD superfamily base excision DNA repair protein LKW27_09210 PF12833 Helix-turn-helix domain LKW27_09215 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit LKW27_09220 PF01171 PP-loop family LKW27_09220 PF09179 TilS substrate binding domain LKW27_09225 PF00696 Amino acid kinase family LKW27_09225 PF01842 ACT domain LKW27_09225 PF13840 ACT domain LKW27_09290 PF03527 RHS protein LKW27_09290 PF05593 RHS Repeat LKW27_09320 PF00176 SNF2 family N-terminal domain LKW27_09320 PF00271 Helicase conserved C-terminal domain LKW27_09320 PF04434 SWIM zinc finger LKW27_09335 PF00877 NlpC/P60 family LKW27_09340 PF07995 Glucose / Sorbosone dehydrogenase LKW27_09350 PF16177 Acetyl-coenzyme A synthetase N-terminus LKW27_09350 PF00501 AMP-binding enzyme LKW27_09350 PF13193 AMP-binding enzyme C-terminal domain LKW27_09355 PF00990 Diguanylate cyclase, GGDEF domain LKW27_09355 PF03707 Bacterial signalling protein N terminal repeat LKW27_09355 PF00563 EAL domain LKW27_09365 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain LKW27_09365 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain LKW27_09370 PF12833 Helix-turn-helix domain LKW27_09370 PF02805 Metal binding domain of Ada LKW27_09370 PF06029 AlkA N-terminal domain LKW27_09370 PF00730 HhH-GPD superfamily base excision DNA repair protein LKW27_09375 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II LKW27_09375 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain LKW27_09375 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I LKW27_09375 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III LKW27_09385 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) LKW27_09385 PF00534 Glycosyl transferases group 1 LKW27_09390 PF00583 Acetyltransferase (GNAT) family LKW27_09390 PF13607 Succinyl-CoA ligase like flavodoxin domain LKW27_09390 PF13380 CoA binding domain LKW27_09395 PF02321 Outer membrane efflux protein LKW27_09410 PF00440 Bacterial regulatory proteins, tetR family LKW27_09410 PF17922 Tetracyclin repressor-like, C-terminal domain LKW27_09415 PF01625 Peptide methionine sulfoxide reductase LKW27_09425 PF00005 ABC transporter LKW27_09450 PF07715 TonB-dependent Receptor Plug Domain LKW27_09450 PF00593 TonB dependent receptor LKW27_09455 PF01266 FAD dependent oxidoreductase LKW27_09460 PF00171 Aldehyde dehydrogenase family LKW27_09470 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region LKW27_09470 PF01243 Pyridoxamine 5'-phosphate oxidase LKW27_09495 PF00356 Bacterial regulatory proteins, lacI family LKW27_09505 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component LKW27_09510 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component LKW27_09515 PF03480 Bacterial extracellular solute-binding protein, family 7 LKW27_09520 PF00920 Dehydratase family LKW27_09525 PF01081 KDPG and KHG aldolase LKW27_09535 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily LKW27_09555 PF00106 short chain dehydrogenase LKW27_09580 PF00005 ABC transporter LKW27_09585 PF03466 LysR substrate binding domain LKW27_09585 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LKW27_09590 PF03358 NADPH-dependent FMN reductase LKW27_09600 PF01717 Cobalamin-independent synthase, Catalytic domain LKW27_09600 PF08267 Cobalamin-independent synthase, N-terminal domain LKW27_09630 PF00849 RNA pseudouridylate synthase LKW27_09635 PF05170 AsmA family LKW27_09640 PF07733 Bacterial DNA polymerase III alpha NTPase domain LKW27_09640 PF17657 Bacterial DNA polymerase III alpha subunit finger domain LKW27_09640 PF14579 Helix-hairpin-helix motif LKW27_09640 PF02811 PHP domain LKW27_09655 PF00719 Inorganic pyrophosphatase LKW27_09660 PF03030 Inorganic H+ pyrophosphatase LKW27_09680 PF00171 Aldehyde dehydrogenase family LKW27_09685 PF02535 ZIP Zinc transporter LKW27_09690 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain LKW27_09690 PF02777 Iron/manganese superoxide dismutases, C-terminal domain LKW27_09705 PF04055 Radical SAM superfamily LKW27_09705 PF06463 Molybdenum Cofactor Synthesis C LKW27_09710 PF12804 MobA-like NTP transferase domain LKW27_09720 PF00994 Probable molybdopterin binding domain LKW27_09720 PF03454 MoeA C-terminal region (domain IV) LKW27_09720 PF03453 MoeA N-terminal region (domain I and II) LKW27_09735 PF00075 RNase H LKW27_09740 PF08241 Methyltransferase domain LKW27_09745 PF02796 Helix-turn-helix domain of resolvase LKW27_09745 PF00239 Resolvase, N terminal domain LKW27_09805 PF16123 Hydroxyacylglutathione hydrolase C-terminus LKW27_09805 PF00753 Metallo-beta-lactamase superfamily LKW27_09810 PF01464 Transglycosylase SLT domain LKW27_09810 PF01476 LysM domain LKW27_09830 PF02132 RecR protein LKW27_09830 PF13662 Toprim domain LKW27_09835 PF02575 YbaB/EbfC DNA-binding family LKW27_09840 PF12169 DNA polymerase III subunits gamma and tau domain III LKW27_09840 PF12168 DNA polymerase III subunits tau domain IV DnaB-binding LKW27_09840 PF12170 DNA polymerase III tau subunit V interacting with alpha LKW27_09845 PF08269 Cache domain LKW27_09845 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LKW27_09860 PF12705 PD-(D/E)XK nuclease superfamily LKW27_09860 PF00580 UvrD/REP helicase N-terminal domain LKW27_09860 PF13361 UvrD-like helicase C-terminal domain LKW27_09870 PF00085 Thioredoxin LKW27_09875 PF07498 Rho termination factor, N-terminal domain LKW27_09875 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain LKW27_09875 PF07497 Rho termination factor, RNA-binding domain LKW27_09880 PF13476 AAA domain LKW27_09885 PF12320 Type 5 capsule protein repressor C-terminal domain LKW27_09885 PF00149 Calcineurin-like phosphoesterase LKW27_09890 PF01197 Ribosomal protein L31 LKW27_09900 PF01554 MatE LKW27_09905 PF11808 Phosphate regulon sensor protein PhoR LKW27_09905 PF00989 PAS fold LKW27_09905 PF00512 His Kinase A (phospho-acceptor) domain LKW27_09905 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LKW27_09910 PF00072 Response regulator receiver domain LKW27_09910 PF00486 Transcriptional regulatory protein, C terminal LKW27_09915 PF01895 PhoU domain LKW27_09920 PF00005 ABC transporter LKW27_09925 PF00528 Binding-protein-dependent transport system inner membrane component LKW27_09930 PF00528 Binding-protein-dependent transport system inner membrane component LKW27_09935 PF12849 PBP superfamily domain LKW27_09940 PF02541 Ppx/GppA phosphatase family LKW27_09950 PF00300 Histidine phosphatase superfamily (branch 1) LKW27_09955 PF13090 Polyphosphate kinase C-terminal domain 2 LKW27_09955 PF02503 Polyphosphate kinase middle domain LKW27_09955 PF17941 Polyphosphate kinase C-terminal domain 1 LKW27_09955 PF13089 Polyphosphate kinase N-terminal domain LKW27_09965 PF00563 EAL domain LKW27_09965 PF00990 Diguanylate cyclase, GGDEF domain LKW27_09965 PF03707 Bacterial signalling protein N terminal repeat LKW27_09970 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III LKW27_09970 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II LKW27_09970 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain LKW27_09970 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I LKW27_09975 PF00809 Pterin binding enzyme LKW27_09980 PF00004 ATPase family associated with various cellular activities (AAA) LKW27_09980 PF17862 AAA+ lid domain LKW27_09980 PF06480 FtsH Extracellular LKW27_09980 PF01434 Peptidase family M41 LKW27_09985 PF01728 FtsJ-like methyltransferase LKW27_09990 PF01985 CRS1 / YhbY (CRM) domain LKW27_10005 PF01272 Transcription elongation factor, GreA/GreB, C-term LKW27_10005 PF03449 Transcription elongation factor, N-terminal LKW27_10010 PF02142 MGS-like domain LKW27_10010 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain LKW27_10010 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain LKW27_10015 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain LKW27_10015 PF00117 Glutamine amidotransferase class-I LKW27_10025 PF00324 Amino acid permease LKW27_10040 PF00171 Aldehyde dehydrogenase family LKW27_10050 PF00441 Acyl-CoA dehydrogenase, C-terminal domain LKW27_10050 PF02771 Acyl-CoA dehydrogenase, N-terminal domain LKW27_10050 PF02770 Acyl-CoA dehydrogenase, middle domain LKW27_10060 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase LKW27_10060 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase LKW27_10065 PF00080 Copper/zinc superoxide dismutase (SODC) LKW27_10070 PF00593 TonB dependent receptor LKW27_10070 PF07715 TonB-dependent Receptor Plug Domain LKW27_10075 PF03401 Tripartite tricarboxylate transporter family receptor LKW27_10085 PF04295 D-galactarate dehydratase / Altronate hydrolase, C terminus LKW27_10085 PF08666 SAF domain LKW27_10090 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component LKW27_10100 PF03480 Bacterial extracellular solute-binding protein, family 7 LKW27_10110 PF01370 NAD dependent epimerase/dehydratase family LKW27_10120 PF03401 Tripartite tricarboxylate transporter family receptor LKW27_10125 PF00701 Dihydrodipicolinate synthetase family LKW27_10145 PF00082 Subtilase family LKW27_10165 PF00376 MerR family regulatory protein LKW27_10165 PF09278 MerR, DNA binding LKW27_10170 PF07690 Major Facilitator Superfamily LKW27_10185 PF01361 Tautomerase enzyme LKW27_10190 PF00043 Glutathione S-transferase, C-terminal domain LKW27_10190 PF02798 Glutathione S-transferase, N-terminal domain LKW27_10195 PF03466 LysR substrate binding domain LKW27_10195 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LKW27_10200 PF00180 Isocitrate/isopropylmalate dehydrogenase LKW27_10220 PF02777 Iron/manganese superoxide dismutases, C-terminal domain LKW27_10220 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain LKW27_10225 PF13742 OB-fold nucleic acid binding domain LKW27_10225 PF02601 Exonuclease VII, large subunit LKW27_10230 PF01618 MotA/TolQ/ExbB proton channel family LKW27_10235 PF02472 Biopolymer transport protein ExbD/TolR LKW27_10240 PF02606 Tetraacyldisaccharide-1-P 4'-kinase LKW27_10245 PF03966 Trm112p-like protein LKW27_10250 PF02348 Cytidylyltransferase LKW27_10255 PF05191 Adenylate kinase, active site lid LKW27_10265 PF00710 Asparaginase, N-terminal LKW27_10265 PF17763 Glutaminase/Asparaginase C-terminal domain LKW27_10270 PF00717 Peptidase S24-like LKW27_10270 PF01726 LexA DNA binding domain LKW27_10280 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold LKW27_10280 PF11898 Domain of unknown function (DUF3418) LKW27_10280 PF00270 DEAD/DEAH box helicase LKW27_10280 PF04408 Helicase associated domain (HA2) LKW27_10280 PF00271 Helicase conserved C-terminal domain LKW27_10290 PF01266 FAD dependent oxidoreductase LKW27_10295 PF00696 Amino acid kinase family LKW27_10295 PF00583 Acetyltransferase (GNAT) family LKW27_10305 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LKW27_10305 PF03466 LysR substrate binding domain LKW27_10320 PF02600 Disulfide bond formation protein DsbB LKW27_10325 PF00005 ABC transporter LKW27_10325 PF17850 CysA C-terminal regulatory domain LKW27_10325 PF12857 TOBE-like domain LKW27_10330 PF00528 Binding-protein-dependent transport system inner membrane component LKW27_10335 PF00528 Binding-protein-dependent transport system inner membrane component LKW27_10355 PF03466 LysR substrate binding domain LKW27_10355 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LKW27_10360 PF02525 Flavodoxin-like fold LKW27_10365 PF03358 NADPH-dependent FMN reductase LKW27_10370 PF03180 NLPA lipoprotein LKW27_10375 PF00672 HAMP domain LKW27_10375 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LKW27_10375 PF02203 Tar ligand binding domain homologue LKW27_10380 PF00528 Binding-protein-dependent transport system inner membrane component LKW27_10385 PF09383 NIL domain LKW27_10385 PF00005 ABC transporter LKW27_10390 PF00512 His Kinase A (phospho-acceptor) domain LKW27_10390 PF08448 PAS fold LKW27_10390 PF00072 Response regulator receiver domain LKW27_10390 PF13188 PAS domain LKW27_10390 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LKW27_10395 PF07690 Major Facilitator Superfamily LKW27_10400 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LKW27_10400 PF03466 LysR substrate binding domain LKW27_10405 PF01451 Low molecular weight phosphotyrosine protein phosphatase LKW27_10415 PF02321 Outer membrane efflux protein LKW27_10420 PF00873 AcrB/AcrD/AcrF family LKW27_10425 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion LKW27_10425 PF00529 HlyD membrane-fusion protein of T1SS LKW27_10430 PF00072 Response regulator receiver domain LKW27_10430 PF00486 Transcriptional regulatory protein, C terminal LKW27_10435 PF00512 His Kinase A (phospho-acceptor) domain LKW27_10435 PF18698 Histidine kinase sensor domain LKW27_10435 PF00989 PAS fold LKW27_10435 PF00672 HAMP domain LKW27_10435 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LKW27_10465 PF02735 Ku70/Ku80 beta-barrel domain LKW27_10470 PF04679 ATP dependent DNA ligase C terminal region LKW27_10470 PF13298 DNA polymerase Ligase (LigD) LKW27_10470 PF01068 ATP dependent DNA ligase domain LKW27_10475 PF06968 Biotin and Thiamin Synthesis associated domain LKW27_10475 PF04055 Radical SAM superfamily LKW27_10495 PF18140 Propionyl-coenzyme A carboxylase BT domain LKW27_10495 PF02785 Biotin carboxylase C-terminal domain LKW27_10495 PF00289 Biotin carboxylase, N-terminal domain LKW27_10495 PF00364 Biotin-requiring enzyme LKW27_10495 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain LKW27_10505 PF01039 Carboxyl transferase domain LKW27_10520 PF02310 B12 binding domain LKW27_10520 PF01642 Methylmalonyl-CoA mutase LKW27_10525 PF07729 FCD domain LKW27_10525 PF00392 Bacterial regulatory proteins, gntR family LKW27_10530 PF00563 EAL domain LKW27_10530 PF03707 Bacterial signalling protein N terminal repeat LKW27_10530 PF00990 Diguanylate cyclase, GGDEF domain LKW27_10535 PF00873 AcrB/AcrD/AcrF family LKW27_10540 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion LKW27_10540 PF00529 HlyD membrane-fusion protein of T1SS LKW27_10545 PF02321 Outer membrane efflux protein LKW27_10585 PF00072 Response regulator receiver domain LKW27_10585 PF00196 Bacterial regulatory proteins, luxR family LKW27_10590 PF02203 Tar ligand binding domain homologue LKW27_10590 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LKW27_10590 PF00672 HAMP domain LKW27_10605 PF01609 Transposase DDE domain LKW27_10605 PF05598 Transposase domain (DUF772) LKW27_10620 PF01207 Dihydrouridine synthase (Dus) LKW27_10625 PF00563 EAL domain LKW27_10625 PF00990 Diguanylate cyclase, GGDEF domain LKW27_10625 PF03707 Bacterial signalling protein N terminal repeat LKW27_10640 PF04060 Putative Fe-S cluster LKW27_10645 PF00672 HAMP domain LKW27_10645 PF02203 Tar ligand binding domain homologue LKW27_10645 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LKW27_10650 PF00155 Aminotransferase class I and II LKW27_10655 PF14805 Tetrahydrodipicolinate N-succinyltransferase N-terminal LKW27_10655 PF14602 Hexapeptide repeat of succinyl-transferase LKW27_10660 PF00437 Type II/IV secretion system protein LKW27_10665 PF07687 Peptidase dimerisation domain LKW27_10665 PF01546 Peptidase family M20/M25/M40 LKW27_10670 PF05175 Methyltransferase small domain LKW27_10675 PF00005 ABC transporter LKW27_10675 PF12848 ABC transporter LKW27_10680 PF00106 short chain dehydrogenase LKW27_10685 PF00108 Thiolase, N-terminal domain LKW27_10685 PF02803 Thiolase, C-terminal domain LKW27_10690 PF07167 Poly-beta-hydroxybutyrate polymerase (PhaC) N-terminus LKW27_10700 PF02578 Multi-copper polyphenol oxidoreductase laccase LKW27_10705 PF13417 Glutathione S-transferase, N-terminal domain LKW27_10710 PF01557 Fumarylacetoacetate (FAA) hydrolase family LKW27_10720 PF00069 Protein kinase domain LKW27_10725 PF00497 Bacterial extracellular solute-binding proteins, family 3 LKW27_10730 PF00905 Penicillin binding protein transpeptidase domain LKW27_10730 PF00912 Transglycosylase LKW27_10735 PF10672 S-adenosylmethionine-dependent methyltransferase LKW27_10735 PF17785 PUA-like domain LKW27_10750 PF03401 Tripartite tricarboxylate transporter family receptor LKW27_10760 PF07992 Pyridine nucleotide-disulphide oxidoreductase LKW27_10760 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain LKW27_10765 PF00364 Biotin-requiring enzyme LKW27_10765 PF02817 e3 binding domain LKW27_10765 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) LKW27_10770 PF17831 Pyruvate dehydrogenase E1 component middle domain LKW27_10770 PF00456 Transketolase, thiamine diphosphate binding domain LKW27_10775 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LKW27_10775 PF00989 PAS fold LKW27_10775 PF00512 His Kinase A (phospho-acceptor) domain LKW27_10780 PF00196 Bacterial regulatory proteins, luxR family LKW27_10780 PF00072 Response regulator receiver domain LKW27_10785 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain LKW27_10785 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain LKW27_10790 PF01432 Peptidase family M3 LKW27_10800 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) LKW27_10805 PF01180 Dihydroorotate dehydrogenase LKW27_10825 PF01266 FAD dependent oxidoreductase LKW27_10830 PF00850 Histone deacetylase domain LKW27_10845 PF00929 Exonuclease LKW27_10850 PF00111 2Fe-2S iron-sulfur cluster binding domain LKW27_10855 PF00012 Hsp70 protein LKW27_10860 PF07743 HSCB C-terminal oligomerisation domain LKW27_10865 PF01521 Iron-sulphur cluster biosynthesis LKW27_10870 PF01592 NifU-like N terminal domain LKW27_10875 PF00266 Aminotransferase class-V LKW27_10880 PF02082 Transcriptional regulator LKW27_10885 PF17757 UvrB interaction domain LKW27_10885 PF12344 Ultra-violet resistance protein B LKW27_10885 PF02151 UvrB/uvrC motif LKW27_10885 PF00271 Helicase conserved C-terminal domain LKW27_10885 PF04851 Type III restriction enzyme, res subunit LKW27_10890 PF00155 Aminotransferase class I and II LKW27_10895 PF02515 CoA-transferase family III LKW27_10905 PF11842 Domain of unknown function (DUF3362) LKW27_10905 PF04055 Radical SAM superfamily LKW27_10905 PF08497 Radical SAM N-terminal LKW27_10910 PF00672 HAMP domain LKW27_10910 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LKW27_10910 PF02203 Tar ligand binding domain homologue LKW27_10920 PF00127 Copper binding proteins, plastocyanin/azurin family LKW27_10925 PF01205 Uncharacterized protein family UPF0029 LKW27_10925 PF09186 Domain of unknown function (DUF1949) LKW27_10930 PF07992 Pyridine nucleotide-disulphide oxidoreductase LKW27_10930 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain LKW27_10940 PF01266 FAD dependent oxidoreductase LKW27_10945 PF01425 Amidase LKW27_10950 PF03401 Tripartite tricarboxylate transporter family receptor LKW27_10955 PF00291 Pyridoxal-phosphate dependent enzyme LKW27_10960 PF03466 LysR substrate binding domain LKW27_10960 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LKW27_10975 PF07995 Glucose / Sorbosone dehydrogenase LKW27_10980 PF01479 S4 domain LKW27_10990 PF08448 PAS fold LKW27_10990 PF01339 CheB methylesterase LKW27_10990 PF01739 CheR methyltransferase, SAM binding domain LKW27_10990 PF03705 CheR methyltransferase, all-alpha domain LKW27_11050 PF03119 NAD-dependent DNA ligase C4 zinc finger domain LKW27_11050 PF12826 Helix-hairpin-helix motif LKW27_11050 PF03120 NAD-dependent DNA ligase OB-fold domain LKW27_11050 PF01653 NAD-dependent DNA ligase adenylation domain LKW27_11050 PF00533 BRCA1 C Terminus (BRCT) domain LKW27_11060 PF02463 RecF/RecN/SMC N terminal domain LKW27_11060 PF06470 SMC proteins Flexible Hinge Domain LKW27_11070 PF02694 Uncharacterised BCR, YnfA/UPF0060 family LKW27_11075 PF03707 Bacterial signalling protein N terminal repeat LKW27_11075 PF00563 EAL domain LKW27_11075 PF00990 Diguanylate cyclase, GGDEF domain LKW27_11080 PF02040 Arsenical pump membrane protein LKW27_11085 PF00664 ABC transporter transmembrane region LKW27_11085 PF00005 ABC transporter LKW27_11090 PF14602 Hexapeptide repeat of succinyl-transferase LKW27_11090 PF12464 Maltose acetyltransferase LKW27_11110 PF13411 MerR HTH family regulatory protein LKW27_11115 PF00216 Bacterial DNA-binding protein LKW27_11120 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain LKW27_11120 PF01588 Putative tRNA binding domain LKW27_11120 PF03147 Ferredoxin-fold anticodon binding domain LKW27_11120 PF03484 tRNA synthetase B5 domain LKW27_11120 PF03483 B3/4 domain LKW27_11125 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain LKW27_11125 PF01409 tRNA synthetases class II core domain (F) LKW27_11130 PF00453 Ribosomal protein L20 LKW27_11135 PF01632 Ribosomal protein L35 LKW27_11140 PF05198 Translation initiation factor IF-3, N-terminal domain LKW27_11140 PF00707 Translation initiation factor IF-3, C-terminal domain LKW27_11145 PF02824 TGS domain LKW27_11145 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain LKW27_11145 PF03129 Anticodon binding domain LKW27_11145 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) LKW27_11150 PF00463 Isocitrate lyase family LKW27_11165 PF01037 Lrp/AsnC ligand binding domain LKW27_11170 PF00892 EamA-like transporter family LKW27_11180 PF13416 Bacterial extracellular solute-binding protein LKW27_11185 PF00106 short chain dehydrogenase LKW27_11190 PF00106 short chain dehydrogenase LKW27_11200 PF13673 Acetyltransferase (GNAT) domain LKW27_11205 PF00107 Zinc-binding dehydrogenase LKW27_11205 PF16884 N-terminal domain of oxidoreductase LKW27_11225 PF02771 Acyl-CoA dehydrogenase, N-terminal domain LKW27_11225 PF02770 Acyl-CoA dehydrogenase, middle domain LKW27_11225 PF12806 Acetyl-CoA dehydrogenase C-terminal like LKW27_11225 PF00441 Acyl-CoA dehydrogenase, C-terminal domain LKW27_11230 PF03061 Thioesterase superfamily LKW27_11235 PF00108 Thiolase, N-terminal domain LKW27_11235 PF02803 Thiolase, C-terminal domain LKW27_11240 PF00378 Enoyl-CoA hydratase/isomerase LKW27_11240 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain LKW27_11240 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain LKW27_11250 PF00563 EAL domain LKW27_11250 PF03707 Bacterial signalling protein N terminal repeat LKW27_11250 PF00990 Diguanylate cyclase, GGDEF domain LKW27_11255 PF00990 Diguanylate cyclase, GGDEF domain LKW27_11275 PF00005 ABC transporter LKW27_11280 PF00005 ABC transporter LKW27_11280 PF12399 Branched-chain amino acid ATP-binding cassette transporter LKW27_11290 PF02653 Branched-chain amino acid transport system / permease component LKW27_11300 PF00501 AMP-binding enzyme LKW27_11300 PF13193 AMP-binding enzyme C-terminal domain LKW27_11305 PF02696 Uncharacterized ACR, YdiU/UPF0061 family LKW27_11310 PF01641 SelR domain LKW27_11315 PF04279 Intracellular septation protein A LKW27_11345 PF01176 Translation initiation factor 1A / IF-1 LKW27_11350 PF02666 Phosphatidylserine decarboxylase LKW27_11360 PF12951 Passenger-associated-transport-repeat LKW27_11365 PF00892 EamA-like transporter family LKW27_11380 PF01979 Amidohydrolase family LKW27_11395 PF01175 Urocanase Rossmann-like domain LKW27_11395 PF17391 Urocanase N-terminal domain LKW27_11395 PF17392 Urocanase C-terminal domain LKW27_11400 PF00221 Aromatic amino acid lyase LKW27_11405 PF00392 Bacterial regulatory proteins, gntR family LKW27_11405 PF07702 UTRA domain LKW27_11410 PF00005 ABC transporter LKW27_11415 PF00528 Binding-protein-dependent transport system inner membrane component LKW27_11425 PF01740 STAS domain LKW27_11425 PF08678 Rsbr N terminal LKW27_11430 PF01740 STAS domain LKW27_11435 PF13581 Histidine kinase-like ATPase domain LKW27_11445 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LKW27_11445 PF00512 His Kinase A (phospho-acceptor) domain LKW27_11450 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LKW27_11450 PF00512 His Kinase A (phospho-acceptor) domain LKW27_11455 PF13426 PAS domain LKW27_11455 PF00072 Response regulator receiver domain LKW27_11455 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LKW27_11465 PF01590 GAF domain LKW27_11465 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LKW27_11465 PF00512 His Kinase A (phospho-acceptor) domain LKW27_11465 PF08446 PAS fold LKW27_11465 PF00360 Phytochrome region LKW27_11475 PF00483 Nucleotidyl transferase LKW27_11480 PF00128 Alpha amylase, catalytic domain LKW27_11480 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) LKW27_11485 PF00128 Alpha amylase, catalytic domain LKW27_11485 PF11941 Domain of unknown function (DUF3459) LKW27_11490 PF00128 Alpha amylase, catalytic domain LKW27_11495 PF08323 Starch synthase catalytic domain LKW27_11495 PF00534 Glycosyl transferases group 1 LKW27_11505 PF00575 S1 RNA binding domain LKW27_11505 PF17876 Cold shock domain LKW27_11505 PF08206 Ribonuclease B OB domain LKW27_11505 PF08461 Ribonuclease R winged-helix domain LKW27_11505 PF00773 RNB domain LKW27_11530 PF11873 Membrane-bound lytic murein transglycosylase C, N-terminal domain LKW27_11530 PF01464 Transglycosylase SLT domain LKW27_11535 PF00464 Serine hydroxymethyltransferase LKW27_11540 PF03477 ATP cone domain LKW27_11550 PF01264 Chorismate synthase LKW27_11555 PF00005 ABC transporter LKW27_11555 PF00571 CBS domain LKW27_11560 PF01053 Cys/Met metabolism PLP-dependent enzyme LKW27_11570 PF13419 Haloacid dehalogenase-like hydrolase LKW27_11575 PF00762 Ferrochelatase LKW27_11580 PF00989 PAS fold LKW27_11580 PF16736 Single Cache-like LKW27_11580 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LKW27_11580 PF00512 His Kinase A (phospho-acceptor) domain LKW27_11585 PF00072 Response regulator receiver domain LKW27_11585 PF00486 Transcriptional regulatory protein, C terminal LKW27_11600 PF10605 3HB-oligomer hydrolase (3HBOH) LKW27_11610 PF07715 TonB-dependent Receptor Plug Domain LKW27_11610 PF00593 TonB dependent receptor LKW27_11620 PF01970 Tripartite tricarboxylate transporter TctA family LKW27_11630 PF03401 Tripartite tricarboxylate transporter family receptor LKW27_11635 PF00072 Response regulator receiver domain LKW27_11635 PF00486 Transcriptional regulatory protein, C terminal LKW27_11640 PF08521 Two-component sensor kinase N-terminal LKW27_11640 PF00512 His Kinase A (phospho-acceptor) domain LKW27_11640 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LKW27_11645 PF02417 Chromate transporter LKW27_11655 PF00248 Aldo/keto reductase family LKW27_11660 PF02146 Sir2 family LKW27_11665 PF08032 RNA 2'-O ribose methyltransferase substrate binding LKW27_11665 PF00588 SpoU rRNA Methylase family LKW27_11670 PF00005 ABC transporter LKW27_11675 PF13472 GDSL-like Lipase/Acylhydrolase family LKW27_11685 PF01053 Cys/Met metabolism PLP-dependent enzyme LKW27_11695 PF01740 STAS domain LKW27_11695 PF00916 Sulfate permease family LKW27_11700 PF00072 Response regulator receiver domain LKW27_11700 PF00990 Diguanylate cyclase, GGDEF domain LKW27_11705 PF10609 NUBPL iron-transfer P-loop NTPase LKW27_11710 PF17773 UPF0176 acylphosphatase like domain LKW27_11715 PF02678 Pirin LKW27_11715 PF05726 Pirin C-terminal cupin domain LKW27_11720 PF03358 NADPH-dependent FMN reductase LKW27_11725 PF02678 Pirin LKW27_11725 PF17954 Quercetinase C-terminal cupin domain LKW27_11730 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LKW27_11730 PF03466 LysR substrate binding domain LKW27_11735 PF01593 Flavin containing amine oxidoreductase LKW27_11740 PF00749 tRNA synthetases class I (E and Q), catalytic domain LKW27_11745 PF02390 Putative methyltransferase LKW27_11750 PF00990 Diguanylate cyclase, GGDEF domain LKW27_11755 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain LKW27_11755 PF02272 DHHA1 domain LKW27_11755 PF01411 tRNA synthetases class II (A) LKW27_11770 PF00034 Cytochrome c LKW27_11780 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LKW27_11780 PF03466 LysR substrate binding domain LKW27_11785 PF03459 TOBE domain LKW27_11790 PF00005 ABC transporter LKW27_11795 PF00528 Binding-protein-dependent transport system inner membrane component LKW27_11805 PF00296 Luciferase-like monooxygenase LKW27_11815 PF09084 NMT1/THI5 like LKW27_11825 PF04362 Bacterial Fe(2+) trafficking LKW27_11830 PF05430 S-adenosyl-L-methionine-dependent methyltransferase LKW27_11830 PF01266 FAD dependent oxidoreductase LKW27_11845 PF01925 Sulfite exporter TauE/SafE LKW27_11850 PF01077 Nitrite and sulphite reductase 4Fe-4S domain LKW27_11850 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain LKW27_11860 PF01507 Phosphoadenosine phosphosulfate reductase family LKW27_11865 PF00009 Elongation factor Tu GTP binding domain LKW27_11870 PF11953 Domain of unknown function (DUF3470) LKW27_11870 PF00037 4Fe-4S binding domain LKW27_11875 PF07992 Pyridine nucleotide-disulphide oxidoreductase LKW27_11920 PF00069 Protein kinase domain LKW27_11925 PF08543 Phosphomethylpyrimidine kinase LKW27_11930 PF01266 FAD dependent oxidoreductase LKW27_11940 PF05690 Thiazole biosynthesis protein ThiG LKW27_11945 PF02581 Thiamine monophosphate synthase LKW27_11955 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain LKW27_11955 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain LKW27_11955 PF18321 3-hydroxybutyryl-CoA dehydrogenase reduced Rossmann-fold domain LKW27_11960 PF00378 Enoyl-CoA hydratase/isomerase LKW27_11965 PF00027 Cyclic nucleotide-binding domain LKW27_11965 PF13545 Crp-like helix-turn-helix domain LKW27_11975 PF00441 Acyl-CoA dehydrogenase, C-terminal domain LKW27_11975 PF02770 Acyl-CoA dehydrogenase, middle domain LKW27_11975 PF02771 Acyl-CoA dehydrogenase, N-terminal domain LKW27_11980 PF01804 Penicillin amidase LKW27_11985 PF00211 Adenylate and Guanylate cyclase catalytic domain LKW27_11985 PF16701 Adenylate cyclase regulatory domain LKW27_11990 PF17676 LD-carboxypeptidase C-terminal domain LKW27_11990 PF02016 LD-carboxypeptidase N-terminal domain LKW27_11995 PF14437 MafB19-like deaminase LKW27_12005 PF13458 Periplasmic binding protein LKW27_12015 PF12392 Collagenase LKW27_12015 PF01136 Peptidase family U32 LKW27_12030 PF07676 WD40-like Beta Propeller Repeat LKW27_12030 PF00326 Prolyl oligopeptidase family LKW27_12035 PF01053 Cys/Met metabolism PLP-dependent enzyme LKW27_12040 PF12867 DinB superfamily LKW27_12040 PF03781 Sulfatase-modifying factor enzyme 1 LKW27_12045 PF10017 Histidine-specific methyltransferase, SAM-dependent LKW27_12055 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LKW27_12055 PF00672 HAMP domain LKW27_12055 PF00512 His Kinase A (phospho-acceptor) domain LKW27_12055 PF01627 Hpt domain LKW27_12055 PF00072 Response regulator receiver domain LKW27_12055 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) LKW27_12060 PF03922 OmpW family LKW27_12065 PF05661 Protein of unknown function (DUF808) LKW27_12070 PF03707 Bacterial signalling protein N terminal repeat LKW27_12070 PF00563 EAL domain LKW27_12070 PF00990 Diguanylate cyclase, GGDEF domain LKW27_12085 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain LKW27_12085 PF18076 Formylglycinamide ribonucleotide amidotransferase N-terminal LKW27_12085 PF02769 AIR synthase related protein, C-terminal domain LKW27_12090 PF00557 Metallopeptidase family M24 LKW27_12095 PF08335 GlnD PII-uridylyltransferase LKW27_12095 PF01966 HD domain LKW27_12095 PF01909 Nucleotidyltransferase domain LKW27_12100 PF01327 Polypeptide deformylase LKW27_12105 PF04304 Protein of unknown function (DUF454) LKW27_12120 PF03588 Leucyl/phenylalanyl-tRNA protein transferase LKW27_12125 PF04376 Arginine-tRNA-protein transferase, N terminus LKW27_12125 PF04377 Arginine-tRNA-protein transferase, C terminus LKW27_12130 PF01614 Bacterial transcriptional regulator LKW27_12130 PF09339 IclR helix-turn-helix domain LKW27_12135 PF00768 D-alanyl-D-alanine carboxypeptidase LKW27_12140 PF00682 HMGL-like LKW27_12140 PF08502 LeuA allosteric (dimerisation) domain LKW27_12145 PF01066 CDP-alcohol phosphatidyltransferase LKW27_12150 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain LKW27_12150 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain LKW27_12155 PF10369 Small subunit of acetolactate synthase LKW27_12160 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain LKW27_12160 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain LKW27_12160 PF00205 Thiamine pyrophosphate enzyme, central domain LKW27_12170 PF04542 Sigma-70 region 2 LKW27_12170 PF08281 Sigma-70, region 4 LKW27_12190 PF01219 Prokaryotic diacylglycerol kinase LKW27_12195 PF03641 Possible lysine decarboxylase LKW27_12200 PF00543 Nitrogen regulatory protein P-II LKW27_12205 PF00795 Carbon-nitrogen hydrolase LKW27_12205 PF02540 NAD synthase LKW27_12215 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LKW27_12215 PF03466 LysR substrate binding domain LKW27_12225 PF03401 Tripartite tricarboxylate transporter family receptor LKW27_12230 PF01584 CheW-like domain LKW27_12235 PF01144 Coenzyme A transferase LKW27_12240 PF01144 Coenzyme A transferase LKW27_12255 PF07992 Pyridine nucleotide-disulphide oxidoreductase LKW27_12265 PF00141 Peroxidase LKW27_12295 PF00199 Catalase LKW27_12295 PF06628 Catalase-related immune-responsive LKW27_12310 PF08212 Lipocalin-like domain LKW27_12320 PF02653 Branched-chain amino acid transport system / permease component LKW27_12325 PF00005 ABC transporter LKW27_12330 PF01037 Lrp/AsnC ligand binding domain LKW27_12335 PF01571 Aminomethyltransferase folate-binding domain LKW27_12335 PF08669 Glycine cleavage T-protein C-terminal barrel domain LKW27_12340 PF01597 Glycine cleavage H-protein LKW27_12345 PF02347 Glycine cleavage system P-protein LKW27_12350 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase LKW27_12350 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase LKW27_12355 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LKW27_12355 PF00072 Response regulator receiver domain LKW27_12355 PF13188 PAS domain LKW27_12355 PF08448 PAS fold LKW27_12355 PF00512 His Kinase A (phospho-acceptor) domain LKW27_12360 PF00849 RNA pseudouridylate synthase LKW27_12365 PF00106 short chain dehydrogenase LKW27_12370 PF03401 Tripartite tricarboxylate transporter family receptor LKW27_12385 PF00582 Universal stress protein family LKW27_12395 PF07238 PilZ domain LKW27_12405 PF01842 ACT domain LKW27_12405 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain LKW27_12405 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain LKW27_12410 PF13458 Periplasmic binding protein LKW27_12425 PF00883 Cytosol aminopeptidase family, catalytic domain LKW27_12425 PF02789 Cytosol aminopeptidase family, N-terminal domain LKW27_12445 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LKW27_12445 PF03466 LysR substrate binding domain LKW27_12450 PF00155 Aminotransferase class I and II LKW27_12465 PF00005 ABC transporter LKW27_12470 PF12399 Branched-chain amino acid ATP-binding cassette transporter LKW27_12470 PF00005 ABC transporter LKW27_12480 PF02653 Branched-chain amino acid transport system / permease component LKW27_12485 PF13458 Periplasmic binding protein LKW27_12490 PF13193 AMP-binding enzyme C-terminal domain LKW27_12490 PF00501 AMP-binding enzyme LKW27_12495 PF02771 Acyl-CoA dehydrogenase, N-terminal domain LKW27_12495 PF02770 Acyl-CoA dehydrogenase, middle domain LKW27_12495 PF00441 Acyl-CoA dehydrogenase, C-terminal domain LKW27_12500 PF00378 Enoyl-CoA hydratase/isomerase LKW27_12510 PF00106 short chain dehydrogenase LKW27_12515 PF01494 FAD binding domain LKW27_12525 PF12697 Alpha/beta hydrolase family LKW27_12530 PF07689 KaiB domain LKW27_12530 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LKW27_12530 PF00512 His Kinase A (phospho-acceptor) domain LKW27_12540 PF11398 Protein of unknown function (DUF2813) LKW27_12550 PF00580 UvrD/REP helicase N-terminal domain LKW27_12550 PF13361 UvrD-like helicase C-terminal domain LKW27_12585 PF00575 S1 RNA binding domain LKW27_12585 PF10150 Ribonuclease E/G family LKW27_12590 PF02545 Maf-like protein LKW27_12600 PF02590 Predicted SPOUT methyltransferase LKW27_12610 PF01218 Coproporphyrinogen III oxidase LKW27_12615 PF02843 Phosphoribosylglycinamide synthetase, C domain LKW27_12615 PF02844 Phosphoribosylglycinamide synthetase, N domain LKW27_12615 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain LKW27_12620 PF01709 Transcriptional regulator LKW27_12625 PF05872 Bacterial protein of unknown function (DUF853) LKW27_12630 PF00753 Metallo-beta-lactamase superfamily LKW27_12645 PF02913 FAD linked oxidases, C-terminal domain LKW27_12645 PF01565 FAD binding domain LKW27_12650 PF10397 Adenylosuccinate lyase C-terminus LKW27_12650 PF00206 Lyase LKW27_12655 PF03401 Tripartite tricarboxylate transporter family receptor LKW27_12660 PF00581 Rhodanese-like domain LKW27_12665 PF03401 Tripartite tricarboxylate transporter family receptor LKW27_12670 PF01568 Molydopterin dinucleotide binding domain LKW27_12670 PF00384 Molybdopterin oxidoreductase LKW27_12675 PF00043 Glutathione S-transferase, C-terminal domain LKW27_12675 PF02798 Glutathione S-transferase, N-terminal domain LKW27_12680 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain LKW27_12680 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain LKW27_12680 PF00378 Enoyl-CoA hydratase/isomerase LKW27_12685 PF00291 Pyridoxal-phosphate dependent enzyme LKW27_12695 PF13302 Acetyltransferase (GNAT) domain LKW27_12705 PF07969 Amidohydrolase family LKW27_12740 PF01556 DnaJ C terminal domain LKW27_12740 PF00226 DnaJ domain LKW27_12740 PF00684 DnaJ central domain LKW27_12745 PF00171 Aldehyde dehydrogenase family LKW27_12750 PF08240 Alcohol dehydrogenase GroES-like domain LKW27_12750 PF00107 Zinc-binding dehydrogenase LKW27_12765 PF01590 GAF domain LKW27_12765 PF02954 Bacterial regulatory protein, Fis family LKW27_12765 PF00158 Sigma-54 interaction domain LKW27_12770 PF02146 Sir2 family LKW27_12775 PF08411 Exonuclease C-terminal LKW27_12775 PF00929 Exonuclease LKW27_12780 PF13406 Transglycosylase SLT domain LKW27_12785 PF02861 Clp amino terminal domain, pathogenicity island component LKW27_12785 PF10431 C-terminal, D2-small domain, of ClpB protein LKW27_12785 PF17871 AAA lid domain LKW27_12785 PF07724 AAA domain (Cdc48 subfamily) LKW27_12785 PF00004 ATPase family associated with various cellular activities (AAA) LKW27_12790 PF02617 ATP-dependent Clp protease adaptor protein ClpS LKW27_12795 PF01336 OB-fold nucleic acid binding domain LKW27_12795 PF02811 PHP domain LKW27_12795 PF07733 Bacterial DNA polymerase III alpha NTPase domain LKW27_12795 PF17657 Bacterial DNA polymerase III alpha subunit finger domain LKW27_12795 PF14579 Helix-hairpin-helix motif LKW27_12800 PF13525 Outer membrane lipoprotein LKW27_12805 PF04851 Type III restriction enzyme, res subunit LKW27_12805 PF13307 Helicase C-terminal domain LKW27_12820 PF03969 AFG1-like ATPase LKW27_12825 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain LKW27_12825 PF07992 Pyridine nucleotide-disulphide oxidoreductase LKW27_12830 PF00364 Biotin-requiring enzyme LKW27_12830 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) LKW27_12830 PF02817 e3 binding domain LKW27_12835 PF00676 Dehydrogenase E1 component LKW27_12835 PF16870 2-oxoglutarate dehydrogenase C-terminal LKW27_12835 PF02779 Transketolase, pyrimidine binding domain LKW27_12835 PF16078 2-oxoglutarate dehydrogenase N-terminus LKW27_12840 PF01594 AI-2E family transporter LKW27_12845 PF13426 PAS domain LKW27_12845 PF00563 EAL domain LKW27_12845 PF08448 PAS fold LKW27_12845 PF08447 PAS fold LKW27_12845 PF05231 MASE1 LKW27_12845 PF00990 Diguanylate cyclase, GGDEF domain LKW27_12850 PF08352 Oligopeptide/dipeptide transporter, C-terminal region LKW27_12850 PF00005 ABC transporter LKW27_12855 PF00528 Binding-protein-dependent transport system inner membrane component LKW27_12855 PF12911 N-terminal TM domain of oligopeptide transport permease C LKW27_12860 PF00528 Binding-protein-dependent transport system inner membrane component LKW27_12865 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle LKW27_12875 PF02469 Fasciclin domain LKW27_12880 PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain LKW27_12880 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain LKW27_12880 PF01276 Orn/Lys/Arg decarboxylase, major domain LKW27_12890 PF01145 SPFH domain / Band 7 family LKW27_12950 PF03401 Tripartite tricarboxylate transporter family receptor LKW27_12955 PF01970 Tripartite tricarboxylate transporter TctA family LKW27_12965 PF00486 Transcriptional regulatory protein, C terminal LKW27_12965 PF00072 Response regulator receiver domain LKW27_12975 PF00512 His Kinase A (phospho-acceptor) domain LKW27_12975 PF00672 HAMP domain LKW27_12975 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LKW27_12990 PF13419 Haloacid dehalogenase-like hydrolase LKW27_13000 PF00691 OmpA family LKW27_13005 PF03989 DNA gyrase C-terminal domain, beta-propeller LKW27_13005 PF00521 DNA gyrase/topoisomerase IV, subunit A LKW27_13010 PF00266 Aminotransferase class-V LKW27_13015 PF01842 ACT domain LKW27_13015 PF01817 Chorismate mutase type II LKW27_13015 PF00800 Prephenate dehydratase LKW27_13020 PF02153 Prephenate dehydrogenase LKW27_13025 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) LKW27_13030 PF00575 S1 RNA binding domain LKW27_13035 PF00216 Bacterial DNA-binding protein LKW27_13045 PF18073 Rubredoxin metal binding domain LKW27_13050 PF00361 Proton-conducting membrane transporter LKW27_13050 PF04039 Domain related to MnhB subunit of Na+/H+ antiporter LKW27_13050 PF13244 Domain of unknown function (DUF4040) LKW27_13050 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus LKW27_13055 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L LKW27_13060 PF00361 Proton-conducting membrane transporter LKW27_13070 PF04066 Multiple resistance and pH regulation protein F (MrpF / PhaF) LKW27_13080 PF01968 Hydantoinase/oxoprolinase LKW27_13080 PF05378 Hydantoinase/oxoprolinase N-terminal region LKW27_13100 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component LKW27_13105 PF02537 CrcB-like protein, Camphor Resistance (CrcB) LKW27_13125 PF02646 RmuC family LKW27_13130 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain LKW27_13130 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain LKW27_13135 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family LKW27_13135 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain LKW27_13150 PF09361 Phasin protein LKW27_13165 PF01618 MotA/TolQ/ExbB proton channel family LKW27_13170 PF02472 Biopolymer transport protein ExbD/TolR LKW27_13180 PF03928 Haem-degrading LKW27_13185 PF01027 Inhibitor of apoptosis-promoting Bax1 LKW27_13195 PF05958 tRNA (Uracil-5-)-methyltransferase LKW27_13205 PF01037 Lrp/AsnC ligand binding domain LKW27_13210 PF00171 Aldehyde dehydrogenase family LKW27_13210 PF18327 Proline utilization A proline dehydrogenase N-terminal domain LKW27_13210 PF14850 DNA-binding domain of Proline dehydrogenase LKW27_13210 PF01619 Proline dehydrogenase LKW27_13220 PF01032 FecCD transport family LKW27_13230 PF00005 ABC transporter LKW27_13235 PF07715 TonB-dependent Receptor Plug Domain LKW27_13235 PF00593 TonB dependent receptor LKW27_13245 PF02798 Glutathione S-transferase, N-terminal domain LKW27_13245 PF00043 Glutathione S-transferase, C-terminal domain LKW27_13250 PF03401 Tripartite tricarboxylate transporter family receptor LKW27_13270 PF00293 NUDIX domain LKW27_13275 PF00313 'Cold-shock' DNA-binding domain LKW27_13290 PF07992 Pyridine nucleotide-disulphide oxidoreductase LKW27_13295 PF13649 Methyltransferase domain LKW27_13345 PF03527 RHS protein LKW27_13345 PF05593 RHS Repeat LKW27_13355 PF04717 Type VI secretion system, phage-baseplate injector LKW27_13355 PF06715 Gp5 C-terminal repeat (3 copies) LKW27_13400 PF02463 RecF/RecN/SMC N terminal domain LKW27_13405 PF01420 Type I restriction modification DNA specificity domain LKW27_13410 PF12161 HsdM N-terminal domain LKW27_13410 PF02384 N-6 DNA Methylase LKW27_13450 PF00589 Phage integrase family LKW27_13450 PF13356 Arm DNA-binding domain LKW27_13465 PF01555 DNA methylase LKW27_13475 PF00239 Resolvase, N terminal domain LKW27_13475 PF02796 Helix-turn-helix domain of resolvase LKW27_13505 PF17273 Family of unknown function (DUF5338) LKW27_13535 PF13356 Arm DNA-binding domain LKW27_13535 PF00589 Phage integrase family LKW27_13540 PF00117 Glutamine amidotransferase class-I LKW27_13540 PF02540 NAD synthase LKW27_13540 PF00958 GMP synthase C terminal domain LKW27_13555 PF00571 CBS domain LKW27_13555 PF00478 IMP dehydrogenase / GMP reductase domain LKW27_13565 PF03658 RnfH family Ubiquitin LKW27_13570 PF03364 Polyketide cyclase / dehydrase and lipid transport LKW27_13575 PF01668 SmpB protein LKW27_13585 PF04542 Sigma-70 region 2 LKW27_13585 PF08281 Sigma-70, region 4 LKW27_13595 PF00378 Enoyl-CoA hydratase/isomerase LKW27_13600 PF03471 Transporter associated domain LKW27_13600 PF03741 Integral membrane protein TerC family LKW27_13605 PF00679 Elongation factor G C-terminus LKW27_13605 PF00009 Elongation factor Tu GTP binding domain LKW27_13605 PF03144 Elongation factor Tu domain 2 LKW27_13610 PF16198 tRNA pseudouridylate synthase B C-terminal domain LKW27_13610 PF01509 TruB family pseudouridylate synthase (N terminal domain) LKW27_13615 PF02033 Ribosome-binding factor A LKW27_13620 PF08364 Bacterial translation initiation factor IF-2 associated region LKW27_13620 PF11987 Translation-initiation factor 2 LKW27_13620 PF00009 Elongation factor Tu GTP binding domain LKW27_13620 PF04760 Translation initiation factor IF-2, N-terminal region LKW27_13625 PF13184 NusA-like KH domain LKW27_13625 PF08529 NusA N-terminal domain LKW27_13625 PF00575 S1 RNA binding domain LKW27_13630 PF02576 RimP N-terminal domain LKW27_13640 PF00034 Cytochrome c LKW27_13640 PF13442 Cytochrome C oxidase, cbb3-type, subunit III LKW27_13640 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase LKW27_13655 PF03401 Tripartite tricarboxylate transporter family receptor LKW27_13670 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LKW27_13670 PF03466 LysR substrate binding domain LKW27_13705 PF02423 Ornithine cyclodeaminase/mu-crystallin family LKW27_13710 PF13458 Periplasmic binding protein LKW27_13725 PF00899 ThiF family LKW27_13735 PF00691 OmpA family LKW27_13740 PF07676 WD40-like Beta Propeller Repeat LKW27_13740 PF04052 TolB amino-terminal domain LKW27_13745 PF00005 ABC transporter LKW27_13745 PF00664 ABC transporter transmembrane region LKW27_13755 PF01026 TatD related DNase LKW27_13770 PF02223 Thymidylate kinase LKW27_13775 PF02618 YceG-like family LKW27_13780 PF01571 Aminomethyltransferase folate-binding domain LKW27_13790 PF07859 alpha/beta hydrolase fold LKW27_13795 PF01557 Fumarylacetoacetate (FAA) hydrolase family LKW27_13800 PF00465 Iron-containing alcohol dehydrogenase LKW27_13815 PF17674 HHH domain LKW27_13815 PF00575 S1 RNA binding domain LKW27_13815 PF09371 Tex-like protein N-terminal domain LKW27_13815 PF16921 Tex protein YqgF-like domain LKW27_13840 PF07690 Major Facilitator Superfamily LKW27_13845 PF07690 Major Facilitator Superfamily LKW27_13885 PF00749 tRNA synthetases class I (E and Q), catalytic domain LKW27_13890 PF01053 Cys/Met metabolism PLP-dependent enzyme LKW27_13895 PF00156 Phosphoribosyl transferase domain LKW27_13900 PF02674 Colicin V production protein LKW27_13910 PF02875 Mur ligase family, glutamate ligase domain LKW27_13910 PF08245 Mur ligase middle domain LKW27_13915 PF03960 ArsC family LKW27_13925 PF06865 Pyrimidine/purine nucleoside phosphorylase LKW27_13930 PF00764 Arginosuccinate synthase LKW27_13935 PF01565 FAD binding domain LKW27_13935 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain LKW27_13940 PF04461 Protein of unknown function (DUF520) LKW27_13955 PF02660 Glycerol-3-phosphate acyltransferase LKW27_13960 PF04073 Aminoacyl-tRNA editing domain LKW27_13965 PF00248 Aldo/keto reductase family LKW27_13970 PF06827 Zinc finger found in FPG and IleRS LKW27_13970 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain LKW27_13970 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain LKW27_13980 PF02463 RecF/RecN/SMC N terminal domain LKW27_13990 PF01433 Peptidase family M1 domain LKW27_13990 PF17432 Domain of unknown function (DUF3458_C) ARM repeats LKW27_13990 PF11940 Domain of unknown function (DUF3458) Ig-like fold LKW27_13995 PF00316 Fructose-1-6-bisphosphatase, N-terminal domain LKW27_14005 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LKW27_14005 PF03466 LysR substrate binding domain LKW27_14010 PF00441 Acyl-CoA dehydrogenase, C-terminal domain LKW27_14010 PF02770 Acyl-CoA dehydrogenase, middle domain LKW27_14010 PF18158 Adaptive response protein AidB N-terminal domain LKW27_14015 PF03401 Tripartite tricarboxylate transporter family receptor LKW27_14020 PF02515 CoA-transferase family III LKW27_14025 PF00588 SpoU rRNA Methylase family LKW27_14025 PF08032 RNA 2'-O ribose methyltransferase substrate binding LKW27_14030 PF01351 Ribonuclease HII LKW27_14035 PF02684 Lipid-A-disaccharide synthetase LKW27_14040 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 LKW27_14040 PF00132 Bacterial transferase hexapeptide (six repeats) LKW27_14045 PF07977 FabA-like domain LKW27_14050 PF00132 Bacterial transferase hexapeptide (six repeats) LKW27_14050 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD LKW27_14060 PF07244 Surface antigen variable number repeat LKW27_14060 PF01103 Surface antigen LKW27_14065 PF17820 PDZ domain LKW27_14065 PF02163 Peptidase family M50 LKW27_14070 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase LKW27_14070 PF13288 DXP reductoisomerase C-terminal domain LKW27_14070 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain LKW27_14080 PF01255 Putative undecaprenyl diphosphate synthase LKW27_14085 PF01765 Ribosome recycling factor LKW27_14090 PF00696 Amino acid kinase family LKW27_14095 PF00889 Elongation factor TS LKW27_14100 PF00318 Ribosomal protein S2 LKW27_14105 PF01266 FAD dependent oxidoreductase LKW27_14110 PF03853 YjeF-related protein N-terminus LKW27_14110 PF01256 Carbohydrate kinase LKW27_14135 PF13411 MerR HTH family regulatory protein LKW27_14140 PF00403 Heavy-metal-associated domain LKW27_14165 PF00394 Multicopper oxidase LKW27_14165 PF07731 Multicopper oxidase LKW27_14165 PF07732 Multicopper oxidase LKW27_14180 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LKW27_14180 PF03466 LysR substrate binding domain LKW27_14195 PF03576 Peptidase family S58 LKW27_14210 PF12848 ABC transporter LKW27_14210 PF00005 ABC transporter LKW27_14215 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain LKW27_14215 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain LKW27_14220 PF00270 DEAD/DEAH box helicase LKW27_14220 PF00271 Helicase conserved C-terminal domain LKW27_14230 PF00999 Sodium/hydrogen exchanger family LKW27_14230 PF02254 TrkA-N domain LKW27_14260 PF00202 Aminotransferase class-III LKW27_14270 PF12833 Helix-turn-helix domain LKW27_14275 PF00171 Aldehyde dehydrogenase family LKW27_14280 PF07044 Protein of unknown function (DUF1329) LKW27_14300 PF00881 Nitroreductase family LKW27_14305 PF00171 Aldehyde dehydrogenase family LKW27_14310 PF00171 Aldehyde dehydrogenase family LKW27_14315 PF01494 FAD binding domain LKW27_14325 PF00561 alpha/beta hydrolase fold LKW27_14340 PF03442 Carbohydrate binding domain X2 LKW27_14340 PF00942 Cellulose binding domain LKW27_14350 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain LKW27_14350 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain LKW27_14355 PF03401 Tripartite tricarboxylate transporter family receptor LKW27_14365 PF01757 Acyltransferase family LKW27_14445 PF12441 CopG antitoxin of type II toxin-antitoxin system LKW27_14465 PF03869 Arc-like DNA binding domain LKW27_14560 PF10668 Phage terminase small subunit LKW27_14560 PF03592 Terminase small subunit LKW27_14595 PF03354 Phage Terminase LKW27_14670 PF00145 C-5 cytosine-specific DNA methylase LKW27_14755 PF00216 Bacterial DNA-binding protein LKW27_14760 PF01066 CDP-alcohol phosphatidyltransferase LKW27_14765 PF08459 UvrC Helix-hairpin-helix N-terminal LKW27_14765 PF01541 GIY-YIG catalytic domain LKW27_14780 PF03576 Peptidase family S58 LKW27_14785 PF00528 Binding-protein-dependent transport system inner membrane component LKW27_14785 PF12911 N-terminal TM domain of oligopeptide transport permease C LKW27_14790 PF00528 Binding-protein-dependent transport system inner membrane component LKW27_14795 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle LKW27_14800 PF08352 Oligopeptide/dipeptide transporter, C-terminal region LKW27_14800 PF00005 ABC transporter LKW27_14805 PF01112 Asparaginase LKW27_14815 PF03401 Tripartite tricarboxylate transporter family receptor LKW27_14820 PF03401 Tripartite tricarboxylate transporter family receptor LKW27_14825 PF00682 HMGL-like LKW27_14830 PF02515 CoA-transferase family III LKW27_14845 PF01132 Elongation factor P (EF-P) OB domain LKW27_14845 PF08207 Elongation factor P (EF-P) KOW-like domain LKW27_14845 PF09285 Elongation factor P, C-terminal LKW27_14855 PF07690 Major Facilitator Superfamily LKW27_14860 PF00919 Uncharacterized protein family UPF0004 LKW27_14860 PF04055 Radical SAM superfamily LKW27_14860 PF18693 TRAM domain LKW27_14865 PF05233 PHB accumulation regulatory domain LKW27_14865 PF07879 PHB/PHA accumulation regulator DNA-binding domain LKW27_14875 PF01965 DJ-1/PfpI family LKW27_14915 PF13291 ACT domain LKW27_14915 PF04607 Region found in RelA / SpoT proteins LKW27_14915 PF02824 TGS domain LKW27_14925 PF00106 short chain dehydrogenase LKW27_14935 PF00486 Transcriptional regulatory protein, C terminal LKW27_14935 PF00072 Response regulator receiver domain LKW27_14940 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LKW27_14940 PF00672 HAMP domain LKW27_14940 PF00512 His Kinase A (phospho-acceptor) domain LKW27_14945 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase LKW27_14945 PF02542 YgbB family LKW27_14950 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase LKW27_14950 PF02542 YgbB family LKW27_14955 PF02559 CarD-like/TRCF domain LKW27_14955 PF00270 DEAD/DEAH box helicase LKW27_14955 PF00271 Helicase conserved C-terminal domain LKW27_14955 PF03461 TRCF domain LKW27_14955 PF17757 UvrB interaction domain LKW27_14965 PF07519 Tannase and feruloyl esterase LKW27_14980 PF03180 NLPA lipoprotein LKW27_14985 PF01810 LysE type translocator LKW27_14990 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LKW27_14990 PF03466 LysR substrate binding domain LKW27_14995 PF02082 Transcriptional regulator LKW27_15000 PF01814 Hemerythrin HHE cation binding domain LKW27_15000 PF04405 Domain of Unknown function (DUF542) LKW27_15020 PF00270 DEAD/DEAH box helicase LKW27_15020 PF00271 Helicase conserved C-terminal domain LKW27_15035 PF04102 SlyX LKW27_15040 PF00155 Aminotransferase class I and II LKW27_15045 PF00730 HhH-GPD superfamily base excision DNA repair protein LKW27_15045 PF00633 Helix-hairpin-helix motif LKW27_15045 PF10576 Iron-sulfur binding domain of endonuclease III LKW27_15055 PF00583 Acetyltransferase (GNAT) family LKW27_15065 PF00083 Sugar (and other) transporter LKW27_15090 PF02277 Phosphoribosyltransferase LKW27_15095 PF07685 CobB/CobQ-like glutamine amidotransferase domain LKW27_15095 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain LKW27_15115 PF15457 Type III T3SS secreted effector HopW1-1/HopPmaA LKW27_15120 PF15457 Type III T3SS secreted effector HopW1-1/HopPmaA LKW27_15135 PF03186 CobD/Cbib protein LKW27_15140 PF00881 Nitroreductase family LKW27_15145 PF02572 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP LKW27_15145 PF12557 Cob(I)alamin adenosyltransferase N terminal LKW27_15150 PF00005 ABC transporter LKW27_15155 PF01032 FecCD transport family LKW27_15165 PF02283 Cobinamide kinase / cobinamide phosphate guanyltransferase LKW27_15170 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain LKW27_15170 PF07685 CobB/CobQ-like glutamine amidotransferase domain LKW27_15175 PF00593 TonB dependent receptor LKW27_15175 PF07715 TonB-dependent Receptor Plug Domain LKW27_15190 PF00563 EAL domain LKW27_15190 PF00990 Diguanylate cyclase, GGDEF domain LKW27_15190 PF03707 Bacterial signalling protein N terminal repeat LKW27_15195 PF00072 Response regulator receiver domain LKW27_15205 PF06969 HemN C-terminal domain LKW27_15205 PF04055 Radical SAM superfamily LKW27_15210 PF13545 Crp-like helix-turn-helix domain LKW27_15210 PF00027 Cyclic nucleotide-binding domain LKW27_15225 PF11614 IG-like fold at C-terminal of FixG, putative oxidoreductase LKW27_15225 PF12801 4Fe-4S binding domain LKW27_15225 PF13746 4Fe-4S dicluster domain LKW27_15230 PF13442 Cytochrome C oxidase, cbb3-type, subunit III LKW27_15230 PF14715 N-terminal domain of cytochrome oxidase-cbb3, FixP LKW27_15245 PF00115 Cytochrome C and Quinol oxidase polypeptide I LKW27_15255 PF00403 Heavy-metal-associated domain LKW27_15265 PF00582 Universal stress protein family LKW27_15270 PF02661 Fic/DOC family LKW27_15270 PF05860 haemagglutination activity domain LKW27_15270 PF03543 Yersinia/Haemophilus virulence surface antigen LKW27_15270 PF13018 Extended Signal Peptide of Type V secretion system LKW27_15270 PF13332 Hemagglutinin repeat LKW27_15275 PF00501 AMP-binding enzyme LKW27_15275 PF13193 AMP-binding enzyme C-terminal domain LKW27_15280 PF00378 Enoyl-CoA hydratase/isomerase LKW27_15285 PF03401 Tripartite tricarboxylate transporter family receptor LKW27_15295 PF00392 Bacterial regulatory proteins, gntR family LKW27_15295 PF07729 FCD domain LKW27_15300 PF01790 Prolipoprotein diacylglyceryl transferase LKW27_15305 PF02661 Fic/DOC family LKW27_15310 PF00210 Ferritin-like domain LKW27_15315 PF00920 Dehydratase family LKW27_15325 PF00034 Cytochrome c LKW27_15345 PF16177 Acetyl-coenzyme A synthetase N-terminus LKW27_15345 PF00501 AMP-binding enzyme LKW27_15345 PF13193 AMP-binding enzyme C-terminal domain LKW27_15350 PF03350 Uncharacterized protein family, UPF0114 LKW27_15355 PF00005 ABC transporter LKW27_15355 PF00571 CBS domain LKW27_15360 PF00528 Binding-protein-dependent transport system inner membrane component LKW27_15365 PF04069 Substrate binding domain of ABC-type glycine betaine transport system LKW27_15370 PF00672 HAMP domain LKW27_15370 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LKW27_15370 PF00512 His Kinase A (phospho-acceptor) domain LKW27_15375 PF00072 Response regulator receiver domain LKW27_15375 PF00486 Transcriptional regulatory protein, C terminal LKW27_15385 PF00206 Lyase LKW27_15385 PF10415 Fumarase C C-terminus LKW27_15390 PF03707 Bacterial signalling protein N terminal repeat LKW27_15390 PF00990 Diguanylate cyclase, GGDEF domain LKW27_15390 PF00563 EAL domain LKW27_15400 PF01177 Asp/Glu/Hydantoin racemase LKW27_15405 PF01799 [2Fe-2S] binding domain LKW27_15405 PF00111 2Fe-2S iron-sulfur cluster binding domain LKW27_15405 PF10518 TAT (twin-arginine translocation) pathway signal sequence LKW27_15410 PF03450 CO dehydrogenase flavoprotein C-terminal domain LKW27_15410 PF00941 FAD binding domain in molybdopterin dehydrogenase LKW27_15415 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase LKW27_15415 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain LKW27_15420 PF01863 Protein of unknown function DUF45 LKW27_15435 PF00004 ATPase family associated with various cellular activities (AAA) LKW27_15435 PF07724 AAA domain (Cdc48 subfamily) LKW27_15435 PF17871 AAA lid domain LKW27_15435 PF10431 C-terminal, D2-small domain, of ClpB protein LKW27_15445 PF05947 Type VI secretion system, TssF LKW27_15450 PF04965 Gene 25-like lysozyme LKW27_15455 PF07024 ImpE protein LKW27_15460 PF05943 Type VI secretion protein, EvpB/VC_A0108, tail sheath LKW27_15465 PF05591 Type VI secretion system, VipA, VC_A0107 or Hcp2 LKW27_15480 PF06761 Intracellular multiplication and human macrophage-killing LKW27_15480 PF14331 ImcF-related N-terminal domain LKW27_15480 PF06744 Type VI secretion protein IcmF C-terminal LKW27_15485 PF13488 Glycine zipper LKW27_15485 PF00691 OmpA family LKW27_15490 PF05936 Bacterial Type VI secretion, VC_A0110, EvfL, ImpJ, VasE LKW27_15515 PF03793 PASTA domain LKW27_15515 PF00069 Protein kinase domain LKW27_15535 PF13533 Biotin-lipoyl like LKW27_15540 PF00873 AcrB/AcrD/AcrF family LKW27_15550 PF05697 Bacterial trigger factor protein (TF) LKW27_15550 PF05698 Bacterial trigger factor protein (TF) C-terminus LKW27_15550 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase LKW27_15555 PF00574 Clp protease LKW27_15560 PF06689 ClpX C4-type zinc finger LKW27_15560 PF07724 AAA domain (Cdc48 subfamily) LKW27_15560 PF10431 C-terminal, D2-small domain, of ClpB protein LKW27_15565 PF00004 ATPase family associated with various cellular activities (AAA) LKW27_15565 PF02190 ATP-dependent protease La (LON) substrate-binding domain LKW27_15565 PF05362 Lon protease (S16) C-terminal proteolytic domain LKW27_15590 PF01593 Flavin containing amine oxidoreductase LKW27_15595 PF03631 Virulence factor BrkB LKW27_15605 PF02913 FAD linked oxidases, C-terminal domain LKW27_15605 PF01565 FAD binding domain LKW27_15615 PF00303 Thymidylate synthase LKW27_15625 PF00186 Dihydrofolate reductase LKW27_15630 PF03372 Endonuclease/Exonuclease/phosphatase family LKW27_15640 PF02954 Bacterial regulatory protein, Fis family LKW27_15640 PF00158 Sigma-54 interaction domain LKW27_15640 PF00072 Response regulator receiver domain LKW27_15645 PF00989 PAS fold LKW27_15645 PF00512 His Kinase A (phospho-acceptor) domain LKW27_15645 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LKW27_15655 PF00120 Glutamine synthetase, catalytic domain LKW27_15655 PF03951 Glutamine synthetase, beta-Grasp domain LKW27_15685 PF00849 RNA pseudouridylate synthase LKW27_15685 PF01479 S4 domain LKW27_15715 PF00156 Phosphoribosyl transferase domain LKW27_15720 PF00709 Adenylosuccinate synthetase LKW27_15725 PF13393 Histidyl-tRNA synthetase LKW27_15730 PF01145 SPFH domain / Band 7 family LKW27_15735 PF12221 Bacterial membrane protein N terminal LKW27_15735 PF01145 SPFH domain / Band 7 family LKW27_15740 PF01926 50S ribosome-binding GTPase LKW27_15740 PF13167 GTP-binding GTPase N-terminal LKW27_15740 PF16360 GTP-binding GTPase Middle Region LKW27_15745 PF17209 Hfq protein LKW27_15750 PF01926 50S ribosome-binding GTPase LKW27_15750 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal LKW27_15755 PF13360 PQQ-like domain LKW27_15765 PF13393 Histidyl-tRNA synthetase LKW27_15765 PF03129 Anticodon binding domain LKW27_15770 PF04551 GcpE protein LKW27_15785 PF04055 Radical SAM superfamily LKW27_15790 PF00334 Nucleoside diphosphate kinase LKW27_15795 PF00849 RNA pseudouridylate synthase LKW27_15795 PF01479 S4 domain LKW27_15800 PF04079 Segregation and condensation complex subunit ScpB LKW27_15805 PF00849 RNA pseudouridylate synthase LKW27_15805 PF01479 S4 domain LKW27_15810 PF01476 LysM domain LKW27_15810 PF01551 Peptidase family M23 LKW27_15820 PF01975 Survival protein SurE LKW27_15825 PF08240 Alcohol dehydrogenase GroES-like domain LKW27_15825 PF00698 Acyl transferase domain LKW27_15825 PF02801 Beta-ketoacyl synthase, C-terminal domain LKW27_15825 PF00107 Zinc-binding dehydrogenase LKW27_15825 PF00550 Phosphopantetheine attachment site LKW27_15825 PF00109 Beta-ketoacyl synthase, N-terminal domain LKW27_15825 PF14765 Polyketide synthase dehydratase LKW27_15825 PF08659 KR domain LKW27_15825 PF16197 Ketoacyl-synthetase C-terminal extension LKW27_15830 PF00990 Diguanylate cyclase, GGDEF domain LKW27_15835 PF09423 PhoD-like phosphatase LKW27_15835 PF16655 PhoD-like phosphatase, N-terminal domain LKW27_15845 PF03480 Bacterial extracellular solute-binding protein, family 7 LKW27_15850 PF13188 PAS domain LKW27_15850 PF03707 Bacterial signalling protein N terminal repeat LKW27_15850 PF00563 EAL domain LKW27_15850 PF00990 Diguanylate cyclase, GGDEF domain LKW27_15855 PF10410 DnaB-helicase binding domain of primase LKW27_15855 PF08278 DNA primase DnaG DnaB-binding LKW27_15855 PF13662 Toprim domain LKW27_15855 PF08275 DNA primase catalytic core, N-terminal domain LKW27_15855 PF01807 CHC2 zinc finger LKW27_15860 PF04542 Sigma-70 region 2 LKW27_15860 PF04545 Sigma-70, region 4 LKW27_15860 PF04539 Sigma-70 region 3 LKW27_15860 PF00140 Sigma-70 factor, region 1.2 LKW27_15860 PF03979 Sigma-70 factor, region 1.1 LKW27_15860 PF04546 Sigma-70, non-essential region LKW27_15865 PF00672 HAMP domain LKW27_15865 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LKW27_15865 PF02203 Tar ligand binding domain homologue LKW27_15890 PF08546 Ketopantoate reductase PanE/ApbA C terminal LKW27_15890 PF02558 Ketopantoate reductase PanE/ApbA LKW27_15910 PF13378 Enolase C-terminal domain-like LKW27_15920 PF03401 Tripartite tricarboxylate transporter family receptor LKW27_15925 PF00701 Dihydrodipicolinate synthetase family LKW27_15930 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LKW27_15930 PF03466 LysR substrate binding domain LKW27_15935 PF06903 VirK protein LKW27_15940 PF00892 EamA-like transporter family LKW27_15945 PF02515 CoA-transferase family III LKW27_15955 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase LKW27_15970 PF00474 Sodium:solute symporter family LKW27_15980 PF00391 PEP-utilising enzyme, mobile domain LKW27_15980 PF02896 PEP-utilising enzyme, TIM barrel domain LKW27_15980 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain LKW27_15985 PF03618 Kinase/pyrophosphorylase LKW27_16005 PF04185 Phosphoesterase family LKW27_16005 PF05506 Domain of unknown function (DUF756) LKW27_16010 PF13192 Thioredoxin domain LKW27_16010 PF07992 Pyridine nucleotide-disulphide oxidoreductase LKW27_16015 PF10417 C-terminal domain of 1-Cys peroxiredoxin LKW27_16015 PF00578 AhpC/TSA family LKW27_16020 PF00210 Ferritin-like domain LKW27_16030 PF07715 TonB-dependent Receptor Plug Domain LKW27_16030 PF07660 Secretin and TonB N terminus short domain LKW27_16030 PF00593 TonB dependent receptor LKW27_16055 PF07715 TonB-dependent Receptor Plug Domain LKW27_16055 PF00593 TonB dependent receptor LKW27_16065 PF00171 Aldehyde dehydrogenase family LKW27_16070 PF02321 Outer membrane efflux protein LKW27_16075 PF00873 AcrB/AcrD/AcrF family LKW27_16080 PF13533 Biotin-lipoyl like LKW27_16085 PF07859 alpha/beta hydrolase fold LKW27_16090 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LKW27_16090 PF03466 LysR substrate binding domain LKW27_16095 PF09905 DNA-binding protein VF530 LKW27_16105 PF05221 S-adenosyl-L-homocysteine hydrolase LKW27_16105 PF00670 S-adenosyl-L-homocysteine hydrolase, NAD binding domain LKW27_16110 PF00293 NUDIX domain LKW27_16125 PF14403 Circularly permuted ATP-grasp type 2 LKW27_16130 PF03772 Competence protein LKW27_16130 PF00753 Metallo-beta-lactamase superfamily LKW27_16160 PF08543 Phosphomethylpyrimidine kinase LKW27_16165 PF00672 HAMP domain LKW27_16165 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LKW27_16165 PF02203 Tar ligand binding domain homologue LKW27_16170 PF00672 HAMP domain LKW27_16170 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LKW27_16170 PF02203 Tar ligand binding domain homologue LKW27_16175 PF00521 DNA gyrase/topoisomerase IV, subunit A LKW27_16180 PF01464 Transglycosylase SLT domain LKW27_16185 PF00204 DNA gyrase B LKW27_16185 PF01751 Toprim domain LKW27_16185 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LKW27_16185 PF00986 DNA gyrase B subunit, carboxyl terminus LKW27_16205 PF00701 Dihydrodipicolinate synthetase family LKW27_16210 PF06804 NlpB/DapX lipoprotein LKW27_16215 PF00753 Metallo-beta-lactamase superfamily LKW27_16230 PF08007 Cupin superfamily protein LKW27_16235 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase LKW27_16245 PF00692 dUTPase LKW27_16250 PF04127 DNA / pantothenate metabolism flavoprotein LKW27_16250 PF02441 Flavoprotein LKW27_16255 PF00117 Glutamine amidotransferase class-I LKW27_16255 PF06418 CTP synthase N-terminus LKW27_16260 PF00793 DAHP synthetase I family LKW27_16280 PF03952 Enolase, N-terminal domain LKW27_16280 PF00113 Enolase, C-terminal TIM barrel domain LKW27_16285 PF04977 Septum formation initiator LKW27_16295 PF01430 Hsp33 protein LKW27_16300 PF00132 Bacterial transferase hexapeptide (six repeats) LKW27_16305 PF04305 Protein of unknown function (DUF455) LKW27_16310 PF00563 EAL domain LKW27_16310 PF08668 HDOD domain LKW27_16315 PF00563 EAL domain LKW27_16315 PF08668 HDOD domain LKW27_16320 PF03401 Tripartite tricarboxylate transporter family receptor LKW27_16325 PF02899 Phage integrase, N-terminal SAM-like domain LKW27_16325 PF00589 Phage integrase family LKW27_16330 PF03401 Tripartite tricarboxylate transporter family receptor LKW27_16340 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain LKW27_16340 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain LKW27_16345 PF03466 LysR substrate binding domain LKW27_16345 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LKW27_16355 PF08331 Domain of unknown function (DUF1730) LKW27_16360 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE LKW27_16365 PF01520 N-acetylmuramoyl-L-alanine amidase LKW27_16365 PF11741 AMIN domain LKW27_16380 PF00561 alpha/beta hydrolase fold LKW27_16385 PF09335 SNARE associated Golgi protein LKW27_16390 PF01119 DNA mismatch repair protein, C-terminal domain LKW27_16390 PF08676 MutL C terminal dimerisation domain LKW27_16400 PF03009 Glycerophosphoryl diester phosphodiesterase family LKW27_16405 PF12146 Serine aminopeptidase, S33 LKW27_16410 PF01638 HxlR-like helix-turn-helix LKW27_16415 PF05368 NmrA-like family LKW27_16425 PF00005 ABC transporter LKW27_16430 PF00011 Hsp20/alpha crystallin family LKW27_16450 PF13181 Tetratricopeptide repeat LKW27_16450 PF00535 Glycosyl transferase family 2 LKW27_16470 PF02653 Branched-chain amino acid transport system / permease component LKW27_16485 PF00005 ABC transporter LKW27_16490 PF12399 Branched-chain amino acid ATP-binding cassette transporter LKW27_16490 PF00005 ABC transporter LKW27_16495 PF00664 ABC transporter transmembrane region LKW27_16495 PF00005 ABC transporter LKW27_16510 PF00361 Proton-conducting membrane transporter LKW27_16515 PF01059 NADH-ubiquinone oxidoreductase chain 4, amino terminus LKW27_16515 PF00361 Proton-conducting membrane transporter LKW27_16520 PF00361 Proton-conducting membrane transporter LKW27_16520 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus LKW27_16525 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L LKW27_16530 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 LKW27_16535 PF12838 4Fe-4S dicluster domain LKW27_16540 PF00146 NADH dehydrogenase LKW27_16545 PF09326 NADH-ubiquinone oxidoreductase subunit G, C-terminal LKW27_16545 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region LKW27_16545 PF00384 Molybdopterin oxidoreductase LKW27_16550 PF10531 SLBB domain LKW27_16550 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region LKW27_16550 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit LKW27_16560 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit LKW27_16565 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit LKW27_16570 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit LKW27_16575 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 LKW27_16585 PF03840 Preprotein translocase SecG subunit LKW27_16590 PF00121 Triosephosphate isomerase LKW27_16595 PF14765 Polyketide synthase dehydratase LKW27_16595 PF08659 KR domain LKW27_16595 PF00698 Acyl transferase domain LKW27_16595 PF08240 Alcohol dehydrogenase GroES-like domain LKW27_16595 PF16197 Ketoacyl-synthetase C-terminal extension LKW27_16595 PF02801 Beta-ketoacyl synthase, C-terminal domain LKW27_16595 PF00109 Beta-ketoacyl synthase, N-terminal domain LKW27_16595 PF00550 Phosphopantetheine attachment site LKW27_16600 PF00013 KH domain LKW27_16600 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain LKW27_16600 PF00575 S1 RNA binding domain LKW27_16600 PF01138 3' exoribonuclease family, domain 1 LKW27_16600 PF03725 3' exoribonuclease family, domain 2 LKW27_16605 PF00312 Ribosomal protein S15 LKW27_16610 PF00155 Aminotransferase class I and II LKW27_16620 PF13091 PLD-like domain LKW27_16625 PF01207 Dihydrouridine synthase (Dus) LKW27_16635 PF05175 Methyltransferase small domain LKW27_16645 PF00171 Aldehyde dehydrogenase family LKW27_16655 PF10431 C-terminal, D2-small domain, of ClpB protein LKW27_16655 PF07724 AAA domain (Cdc48 subfamily) LKW27_16655 PF00004 ATPase family associated with various cellular activities (AAA) LKW27_16655 PF02861 Clp amino terminal domain, pathogenicity island component LKW27_16655 PF17871 AAA lid domain LKW27_16660 PF02391 MoaE protein LKW27_16685 PF00701 Dihydrodipicolinate synthetase family LKW27_16690 PF02597 ThiS family LKW27_16695 PF00994 Probable molybdopterin binding domain LKW27_16695 PF03454 MoeA C-terminal region (domain IV) LKW27_16695 PF03453 MoeA N-terminal region (domain I and II) LKW27_16700 PF03205 Molybdopterin guanine dinucleotide synthesis protein B LKW27_16705 PF14821 Threonine synthase N terminus LKW27_16705 PF00291 Pyridoxal-phosphate dependent enzyme LKW27_16710 PF01842 ACT domain LKW27_16710 PF03447 Homoserine dehydrogenase, NAD binding domain LKW27_16710 PF00742 Homoserine dehydrogenase LKW27_16715 PF00155 Aminotransferase class I and II LKW27_16720 PF00239 Resolvase, N terminal domain LKW27_16785 PF00578 AhpC/TSA family LKW27_16790 PF02562 PhoH-like protein LKW27_16790 PF13638 PIN domain LKW27_16800 PF03796 DnaB-like helicase C terminal domain LKW27_16800 PF00772 DnaB-like helicase N terminal domain LKW27_16805 PF01281 Ribosomal protein L9, N-terminal domain LKW27_16805 PF03948 Ribosomal protein L9, C-terminal domain LKW27_16810 PF01084 Ribosomal protein S18 LKW27_16820 PF01250 Ribosomal protein S6 LKW27_16825 PF01025 GrpE LKW27_16830 PF00012 Hsp70 protein LKW27_16835 PF01556 DnaJ C terminal domain LKW27_16835 PF00226 DnaJ domain LKW27_16835 PF00684 DnaJ central domain LKW27_16845 PF00330 Aconitase family (aconitate hydratase) LKW27_16855 PF00694 Aconitase C-terminal domain LKW27_16860 PF00180 Isocitrate/isopropylmalate dehydrogenase LKW27_16870 PF01118 Semialdehyde dehydrogenase, NAD binding domain LKW27_16870 PF02774 Semialdehyde dehydrogenase, dimerisation domain LKW27_16880 PF01416 tRNA pseudouridine synthase LKW27_16885 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase LKW27_16890 PF00291 Pyridoxal-phosphate dependent enzyme LKW27_16895 PF00290 Tryptophan synthase alpha chain LKW27_16900 PF17848 Acetyl-coA carboxylase zinc finger domain LKW27_16900 PF01039 Carboxyl transferase domain LKW27_16905 PF02325 YGGT family LKW27_16920 PF02397 Bacterial sugar transferase LKW27_16945 PF01336 OB-fold nucleic acid binding domain LKW27_16945 PF00152 tRNA synthetases class II (D, K and N) LKW27_16950 PF01590 GAF domain LKW27_16950 PF00990 Diguanylate cyclase, GGDEF domain LKW27_16950 PF00563 EAL domain LKW27_16950 PF00360 Phytochrome region LKW27_16960 PF11737 Protein of unknown function (DUF3300) LKW27_16965 PF00933 Glycosyl hydrolase family 3 N terminal domain LKW27_16975 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ LKW27_16980 PF02565 Recombination protein O C terminal LKW27_16980 PF11967 Recombination protein O N terminal LKW27_16985 PF07650 KH domain LKW27_16985 PF01926 50S ribosome-binding GTPase LKW27_16990 PF00035 Double-stranded RNA binding motif LKW27_16990 PF14622 Ribonuclease-III-like LKW27_17000 PF10502 Signal peptidase, peptidase S26 LKW27_17005 PF00679 Elongation factor G C-terminus LKW27_17005 PF06421 GTP-binding protein LepA C-terminus LKW27_17005 PF00009 Elongation factor Tu GTP binding domain LKW27_17010 PF13180 PDZ domain LKW27_17025 PF04542 Sigma-70 region 2 LKW27_17025 PF08281 Sigma-70, region 4 LKW27_17035 PF00109 Beta-ketoacyl synthase, N-terminal domain LKW27_17035 PF02801 Beta-ketoacyl synthase, C-terminal domain LKW27_17040 PF00550 Phosphopantetheine attachment site LKW27_17050 PF00698 Acyl transferase domain LKW27_17055 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III LKW27_17055 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal LKW27_17060 PF02504 Fatty acid synthesis protein LKW27_17065 PF01783 Ribosomal L32p protein family LKW27_17070 PF02620 Large ribosomal RNA subunit accumulation protein YceD LKW27_17075 PF02545 Maf-like protein LKW27_17080 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases LKW27_17085 PF06965 Na+/H+ antiporter 1 LKW27_17085 PF01343 Peptidase family S49 LKW27_17095 PF13419 Haloacid dehalogenase-like hydrolase LKW27_17100 PF00849 RNA pseudouridylate synthase LKW27_17100 PF01479 S4 domain LKW27_17110 PF00575 S1 RNA binding domain LKW27_17110 PF10150 Ribonuclease E/G family LKW27_17110 PF12111 Polyribonucleotide phosphorylase C terminal LKW27_17115 PF03883 Peroxide stress protein YaaA LKW27_17125 PF14819 Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term LKW27_17125 PF14489 QueF-like protein LKW27_17130 PF13369 Transglutaminase-like superfamily LKW27_17135 PF03023 Lipid II flippase MurJ LKW27_17140 PF01649 Ribosomal protein S20 LKW27_17145 PF06039 Malate:quinone oxidoreductase (Mqo) LKW27_17155 PF00202 Aminotransferase class-III LKW27_17160 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain LKW27_17160 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain LKW27_17175 PF07670 Nucleoside recognition LKW27_17175 PF02421 Ferrous iron transport protein B LKW27_17175 PF07664 Ferrous iron transport protein B C terminus LKW27_17185 PF03692 Putative zinc- or iron-chelating domain LKW27_17190 PF01037 Lrp/AsnC ligand binding domain LKW27_17195 PF04199 Putative cyclase LKW27_17200 PF00266 Aminotransferase class-V LKW27_17205 PF03301 Tryptophan 2,3-dioxygenase LKW27_17210 PF01494 FAD binding domain LKW27_17215 PF03707 Bacterial signalling protein N terminal repeat LKW27_17215 PF00563 EAL domain LKW27_17215 PF00990 Diguanylate cyclase, GGDEF domain LKW27_17230 PF03707 Bacterial signalling protein N terminal repeat LKW27_17230 PF00563 EAL domain LKW27_17230 PF00990 Diguanylate cyclase, GGDEF domain LKW27_17235 PF00330 Aconitase family (aconitate hydratase) LKW27_17235 PF00694 Aconitase C-terminal domain LKW27_17240 PF00816 H-NS histone family LKW27_17245 PF00149 Calcineurin-like phosphoesterase LKW27_17250 PF00271 Helicase conserved C-terminal domain LKW27_17250 PF00270 DEAD/DEAH box helicase LKW27_17255 PF04228 Putative neutral zinc metallopeptidase LKW27_17270 PF00692 dUTPase LKW27_17280 PF02608 ABC transporter substrate-binding protein PnrA-like LKW27_17285 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain LKW27_17285 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain LKW27_17290 PF01804 Penicillin amidase LKW27_17305 PF00962 Adenosine/AMP deaminase LKW27_17315 PF00355 Rieske [2Fe-2S] domain LKW27_17320 PF02608 ABC transporter substrate-binding protein PnrA-like LKW27_17330 PF02653 Branched-chain amino acid transport system / permease component LKW27_17335 PF00005 ABC transporter LKW27_17350 PF00111 2Fe-2S iron-sulfur cluster binding domain LKW27_17350 PF01799 [2Fe-2S] binding domain LKW27_17350 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain LKW27_17350 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase LKW27_17355 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase LKW27_17355 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain LKW27_17370 PF13426 PAS domain LKW27_17370 PF08447 PAS fold LKW27_17370 PF05231 MASE1 LKW27_17370 PF00990 Diguanylate cyclase, GGDEF domain LKW27_17370 PF00563 EAL domain LKW27_17370 PF08448 PAS fold LKW27_17380 PF13609 Gram-negative porin LKW27_17390 PF01042 Endoribonuclease L-PSP LKW27_17395 PF17200 Single Cache domain 2 LKW27_17395 PF07730 Histidine kinase LKW27_17400 PF00072 Response regulator receiver domain LKW27_17400 PF00196 Bacterial regulatory proteins, luxR family LKW27_17405 PF03707 Bacterial signalling protein N terminal repeat LKW27_17405 PF00990 Diguanylate cyclase, GGDEF domain LKW27_17405 PF00563 EAL domain LKW27_17425 PF00576 HIUase/Transthyretin family LKW27_17435 PF13660 Domain of unknown function (DUF4147) LKW27_17435 PF05161 MOFRL family LKW27_17440 PF00392 Bacterial regulatory proteins, gntR family LKW27_17440 PF07729 FCD domain LKW27_17450 PF01546 Peptidase family M20/M25/M40 LKW27_17450 PF07687 Peptidase dimerisation domain LKW27_17455 PF01546 Peptidase family M20/M25/M40 LKW27_17455 PF07687 Peptidase dimerisation domain LKW27_17485 PF00375 Sodium:dicarboxylate symporter family LKW27_17490 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LKW27_17490 PF02203 Tar ligand binding domain homologue LKW27_17490 PF00672 HAMP domain LKW27_17495 PF07729 FCD domain LKW27_17495 PF00392 Bacterial regulatory proteins, gntR family LKW27_17500 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin LKW27_17505 PF01177 Asp/Glu/Hydantoin racemase LKW27_17520 PF03949 Malic enzyme, NAD binding domain LKW27_17520 PF00390 Malic enzyme, N-terminal domain LKW27_17520 PF01515 Phosphate acetyl/butaryl transferase LKW27_17535 PF00005 ABC transporter LKW27_17540 PF00528 Binding-protein-dependent transport system inner membrane component LKW27_17565 PF01176 Translation initiation factor 1A / IF-1 LKW27_17585 PF01774 UreD urease accessory protein LKW27_17590 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LKW27_17590 PF00672 HAMP domain LKW27_17590 PF02743 Cache domain LKW27_17595 PF00106 short chain dehydrogenase LKW27_17605 PF07992 Pyridine nucleotide-disulphide oxidoreductase LKW27_17605 PF13192 Thioredoxin domain LKW27_17640 PF01970 Tripartite tricarboxylate transporter TctA family LKW27_17645 PF07331 Tripartite tricarboxylate transporter TctB family LKW27_17650 PF00437 Type II/IV secretion system protein LKW27_17650 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain LKW27_17665 PF01026 TatD related DNase LKW27_17670 PF00595 PDZ domain LKW27_17675 PF07726 ATPase family associated with various cellular activities (AAA) LKW27_17675 PF17863 AAA lid domain LKW27_17680 PF01882 Protein of unknown function DUF58 LKW27_17685 PF13519 von Willebrand factor type A domain LKW27_17695 PF01784 NIF3 (NGG1p interacting factor 3) LKW27_17700 PF08946 Osmosensory transporter coiled coil LKW27_17700 PF00083 Sugar (and other) transporter LKW27_17705 PF17820 PDZ domain LKW27_17705 PF13180 PDZ domain LKW27_17720 PF00902 Sec-independent protein translocase protein (TatC) LKW27_17725 PF02416 mttA/Hcf106 family LKW27_17730 PF02416 mttA/Hcf106 family LKW27_17735 PF01230 HIT domain LKW27_17750 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase LKW27_17755 PF01502 Phosphoribosyl-AMP cyclohydrolase LKW27_17760 PF00977 Histidine biosynthesis protein LKW27_17770 PF00375 Sodium:dicarboxylate symporter family LKW27_17775 PF16363 GDP-mannose 4,6 dehydratase LKW27_17805 PF17103 Stealth protein CR4, conserved region 4 LKW27_17805 PF11380 Stealth protein CR2, conserved region 2 LKW27_17805 PF17101 Stealth protein CR1, conserved region 1 LKW27_17805 PF00534 Glycosyl transferases group 1 LKW27_17805 PF17102 Stealth protein CR3, conserved region 3 LKW27_17825 PF00977 Histidine biosynthesis protein LKW27_17830 PF00117 Glutamine amidotransferase class-I LKW27_17835 PF00475 Imidazoleglycerol-phosphate dehydratase LKW27_17840 PF00155 Aminotransferase class I and II LKW27_17870 PF00815 Histidinol dehydrogenase LKW27_17875 PF01634 ATP phosphoribosyltransferase LKW27_17880 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) LKW27_17885 PF01722 BolA-like protein LKW27_17890 PF01061 ABC-2 type transporter LKW27_17895 PF00005 ABC transporter LKW27_17915 PF04333 MlaA lipoprotein LKW27_17920 PF02470 MlaD protein LKW27_17925 PF02405 Permease MlaE LKW27_17930 PF00005 ABC transporter LKW27_17935 PF00005 ABC transporter LKW27_17940 PF00528 Binding-protein-dependent transport system inner membrane component LKW27_17945 PF00497 Bacterial extracellular solute-binding proteins, family 3 LKW27_17950 PF07992 Pyridine nucleotide-disulphide oxidoreductase LKW27_17950 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster LKW27_17955 PF00310 Glutamine amidotransferases class-II LKW27_17955 PF04898 Glutamate synthase central domain LKW27_17955 PF01645 Conserved region in glutamate synthase LKW27_17955 PF01493 GXGXG motif LKW27_17975 PF01966 HD domain LKW27_17975 PF13286 Phosphohydrolase-associated domain LKW27_17980 PF01761 3-dehydroquinate synthase LKW27_17985 PF01202 Shikimate kinase LKW27_17995 PF11741 AMIN domain LKW27_17995 PF03958 Bacterial type II/III secretion system short domain LKW27_17995 PF07660 Secretin and TonB N terminus short domain LKW27_17995 PF00263 Bacterial type II and III secretion system protein LKW27_18010 PF05137 Fimbrial assembly protein (PilN) LKW27_18015 PF11104 Type IV pilus assembly protein PilM; LKW27_18020 PF17092 Penicillin-binding protein OB-like domain LKW27_18020 PF00912 Transglycosylase LKW27_18020 PF00905 Penicillin binding protein transpeptidase domain LKW27_18025 PF01491 Frataxin-like domain LKW27_18035 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain LKW27_18035 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain LKW27_18055 PF01794 Ferric reductase like transmembrane component LKW27_18060 PF00174 Oxidoreductase molybdopterin binding domain LKW27_18065 PF01578 Cytochrome C assembly protein LKW27_18070 PF05140 ResB-like family LKW27_18075 PF00034 Cytochrome c LKW27_18080 PF01926 50S ribosome-binding GTPase LKW27_18090 PF03279 Bacterial lipid A biosynthesis acyltransferase LKW27_18100 PF00438 S-adenosylmethionine synthetase, N-terminal domain LKW27_18100 PF02773 S-adenosylmethionine synthetase, C-terminal domain LKW27_18100 PF02772 S-adenosylmethionine synthetase, central domain LKW27_18115 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family LKW27_18115 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain LKW27_18120 PF00795 Carbon-nitrogen hydrolase LKW27_18120 PF02540 NAD synthase LKW27_18125 PF01467 Cytidylyltransferase-like LKW27_18145 PF01546 Peptidase family M20/M25/M40 LKW27_18145 PF07687 Peptidase dimerisation domain LKW27_18150 PF01979 Amidohydrolase family LKW27_18155 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin LKW27_18160 PF01180 Dihydroorotate dehydrogenase LKW27_18165 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster LKW27_18165 PF07992 Pyridine nucleotide-disulphide oxidoreductase LKW27_18170 PF00440 Bacterial regulatory proteins, tetR family LKW27_18170 PF08362 YcdC-like protein, C-terminal region LKW27_18180 PF00535 Glycosyl transferase family 2 LKW27_18200 PF00733 Asparagine synthase LKW27_18200 PF13537 Glutamine amidotransferase domain LKW27_18210 PF00733 Asparagine synthase LKW27_18210 PF13537 Glutamine amidotransferase domain LKW27_18220 PF13439 Glycosyltransferase Family 4 LKW27_18220 PF00534 Glycosyl transferases group 1 LKW27_18225 PF13649 Methyltransferase domain LKW27_18230 PF00005 ABC transporter LKW27_18230 PF14524 Wzt C-terminal domain LKW27_18235 PF01061 ABC-2 type transporter LKW27_18240 PF02350 UDP-N-acetylglucosamine 2-epimerase LKW27_18245 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family LKW27_18250 PF00132 Bacterial transferase hexapeptide (six repeats) LKW27_18255 PF01408 Oxidoreductase family, NAD-binding Rossmann fold LKW27_18255 PF02894 Oxidoreductase family, C-terminal alpha/beta domain LKW27_18260 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain LKW27_18260 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain LKW27_18260 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain LKW27_18265 PF00483 Nucleotidyl transferase LKW27_18265 PF01050 Mannose-6-phosphate isomerase LKW27_18275 PF00166 Chaperonin 10 Kd subunit LKW27_18280 PF00118 TCP-1/cpn60 chaperonin family LKW27_18285 PF00342 Phosphoglucose isomerase LKW27_18290 PF00923 Transaldolase/Fructose-6-phosphate aldolase LKW27_18295 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain LKW27_18295 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain LKW27_18300 PF01418 Helix-turn-helix domain, rpiR family LKW27_18300 PF02685 Glucokinase LKW27_18300 PF01380 SIS domain LKW27_18305 PF00672 HAMP domain LKW27_18305 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LKW27_18305 PF02203 Tar ligand binding domain homologue LKW27_18310 PF00005 ABC transporter LKW27_18310 PF08352 Oligopeptide/dipeptide transporter, C-terminal region LKW27_18315 PF00005 ABC transporter LKW27_18315 PF08352 Oligopeptide/dipeptide transporter, C-terminal region LKW27_18320 PF00528 Binding-protein-dependent transport system inner membrane component LKW27_18320 PF12911 N-terminal TM domain of oligopeptide transport permease C LKW27_18325 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle LKW27_18330 PF07687 Peptidase dimerisation domain LKW27_18330 PF01546 Peptidase family M20/M25/M40 LKW27_18335 PF00528 Binding-protein-dependent transport system inner membrane component LKW27_18340 PF00267 Gram-negative porin LKW27_18345 PF13609 Gram-negative porin LKW27_18350 PF03232 Ubiquinone biosynthesis protein COQ7 LKW27_18355 PF02566 OsmC-like protein LKW27_18360 PF00585 C-terminal regulatory domain of Threonine dehydratase LKW27_18360 PF00291 Pyridoxal-phosphate dependent enzyme LKW27_18365 PF02654 Cobalamin-5-phosphate synthase LKW27_18380 PF07963 Prokaryotic N-terminal methylation motif LKW27_18380 PF08334 Type II secretion system (T2SS), protein G LKW27_18385 PF12019 Type II transport protein GspH LKW27_18390 PF02501 Type II secretion system (T2SS), protein I LKW27_18390 PF07963 Prokaryotic N-terminal methylation motif LKW27_18395 PF07963 Prokaryotic N-terminal methylation motif LKW27_18395 PF11612 Type II secretion system (T2SS), protein J LKW27_18420 PF00263 Bacterial type II and III secretion system protein LKW27_18420 PF03958 Bacterial type II/III secretion system short domain LKW27_18425 PF00437 Type II/IV secretion system protein LKW27_18430 PF03960 ArsC family LKW27_18435 PF00528 Binding-protein-dependent transport system inner membrane component LKW27_18440 PF08402 TOBE domain LKW27_18440 PF00005 ABC transporter LKW27_18445 PF01553 Acyltransferase LKW27_18450 PF01979 Amidohydrolase family LKW27_18455 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain LKW27_18455 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain LKW27_18460 PF00156 Phosphoribosyl transferase domain LKW27_18465 PF03652 Holliday junction resolvase LKW27_18470 PF02622 Uncharacterized ACR, COG1678 LKW27_18475 PF00875 DNA photolyase LKW27_18475 PF03441 FAD binding domain of DNA photolyase LKW27_18480 PF02895 Signal transducing histidine kinase, homodimeric domain LKW27_18480 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LKW27_18480 PF09078 CheY binding LKW27_18480 PF01627 Hpt domain LKW27_18480 PF01584 CheW-like domain LKW27_18485 PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term LKW27_18485 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LKW27_18490 PF01584 CheW-like domain LKW27_18495 PF00072 Response regulator receiver domain LKW27_18500 PF00072 Response regulator receiver domain LKW27_18505 PF00301 Rubredoxin LKW27_18510 PF08543 Phosphomethylpyrimidine kinase LKW27_18510 PF03070 TENA/THI-4/PQQC family LKW27_18510 PF02581 Thiamine monophosphate synthase LKW27_18515 PF00202 Aminotransferase class-III LKW27_18525 PF01808 AICARFT/IMPCHase bienzyme LKW27_18525 PF02142 MGS-like domain LKW27_18530 PF02954 Bacterial regulatory protein, Fis family LKW27_18535 PF01207 Dihydrouridine synthase (Dus) LKW27_18540 PF00990 Diguanylate cyclase, GGDEF domain LKW27_18545 PF09335 SNARE associated Golgi protein LKW27_18550 PF00892 EamA-like transporter family LKW27_18555 PF00005 ABC transporter LKW27_18555 PF00571 CBS domain LKW27_18565 PF01926 50S ribosome-binding GTPase LKW27_18565 PF06071 Protein of unknown function (DUF933) LKW27_18570 PF00111 2Fe-2S iron-sulfur cluster binding domain LKW27_18570 PF03473 MOSC domain LKW27_18570 PF03476 MOSC N-terminal beta barrel domain LKW27_18575 PF01494 FAD binding domain LKW27_18580 PF10411 Disulfide bond isomerase protein N-terminus LKW27_18580 PF13098 Thioredoxin-like domain LKW27_18590 PF00378 Enoyl-CoA hydratase/isomerase LKW27_18595 PF00158 Sigma-54 interaction domain LKW27_18600 PF03358 NADPH-dependent FMN reductase LKW27_18605 PF00296 Luciferase-like monooxygenase LKW27_18625 PF04055 Radical SAM superfamily LKW27_18625 PF01938 TRAM domain LKW27_18625 PF00919 Uncharacterized protein family UPF0004 LKW27_18630 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LKW27_18630 PF00512 His Kinase A (phospho-acceptor) domain LKW27_18640 PF00158 Sigma-54 interaction domain LKW27_18640 PF00072 Response regulator receiver domain LKW27_18645 PF00535 Glycosyl transferase family 2 LKW27_18650 PF02881 SRP54-type protein, helical bundle domain LKW27_18650 PF02978 Signal peptide binding domain LKW27_18650 PF00448 SRP54-type protein, GTPase domain LKW27_18665 PF00512 His Kinase A (phospho-acceptor) domain LKW27_18665 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LKW27_18670 PF02954 Bacterial regulatory protein, Fis family LKW27_18670 PF00072 Response regulator receiver domain LKW27_18670 PF00158 Sigma-54 interaction domain LKW27_18675 PF01510 N-acetylmuramoyl-L-alanine amidase LKW27_18680 PF03477 ATP cone domain LKW27_18680 PF02867 Ribonucleotide reductase, barrel domain LKW27_18680 PF00317 Ribonucleotide reductase, all-alpha domain LKW27_18685 PF00268 Ribonucleotide reductase, small chain LKW27_18695 PF00294 pfkB family carbohydrate kinase LKW27_18710 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain LKW27_18710 PF02785 Biotin carboxylase C-terminal domain LKW27_18710 PF00289 Biotin carboxylase, N-terminal domain LKW27_18715 PF00364 Biotin-requiring enzyme LKW27_18720 PF08534 Redoxin LKW27_18730 PF01225 Mur ligase family, catalytic domain LKW27_18730 PF02875 Mur ligase family, glutamate ligase domain LKW27_18730 PF08245 Mur ligase middle domain LKW27_18740 PF00793 DAHP synthetase I family LKW27_18750 PF01523 Putative modulator of DNA gyrase LKW27_18755 PF01425 Amidase LKW27_18760 PF01098 Cell cycle protein LKW27_18765 PF05728 Uncharacterised protein family (UPF0227) LKW27_18775 PF00773 RNB domain LKW27_18785 PF18317 Shikimate 5'-dehydrogenase C-terminal domain LKW27_18785 PF01488 Shikimate / quinate 5-dehydrogenase LKW27_18785 PF08501 Shikimate dehydrogenase substrate binding domain LKW27_18790 PF00912 Transglycosylase LKW27_18795 PF09339 IclR helix-turn-helix domain LKW27_18795 PF01614 Bacterial transcriptional regulator LKW27_18800 PF03328 HpcH/HpaI aldolase/citrate lyase family LKW27_18810 PF03401 Tripartite tricarboxylate transporter family receptor LKW27_18825 PF02075 Crossover junction endodeoxyribonuclease RuvC LKW27_18835 PF02203 Tar ligand binding domain homologue LKW27_18835 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LKW27_18835 PF00672 HAMP domain LKW27_18840 PF16591 Helical bimodular sensor domain LKW27_18840 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LKW27_18840 PF00672 HAMP domain LKW27_18845 PF13667 ThiC-associated domain LKW27_18845 PF01964 Radical SAM ThiC family LKW27_18855 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase LKW27_18860 PF00091 Tubulin/FtsZ family, GTPase domain LKW27_18860 PF12327 FtsZ family, C-terminal domain LKW27_18865 PF02491 SHS2 domain inserted in FTSA LKW27_18870 PF03799 Cell division protein FtsQ LKW27_18870 PF08478 POTRA domain, FtsQ-type LKW27_18875 PF07478 D-ala D-ala ligase C-terminus LKW27_18875 PF01820 D-ala D-ala ligase N-terminus LKW27_18880 PF01225 Mur ligase family, catalytic domain LKW27_18880 PF02875 Mur ligase family, glutamate ligase domain LKW27_18880 PF08245 Mur ligase middle domain LKW27_18885 PF03033 Glycosyltransferase family 28 N-terminal domain LKW27_18885 PF04101 Glycosyltransferase family 28 C-terminal domain LKW27_18890 PF01098 Cell cycle protein LKW27_18895 PF02875 Mur ligase family, glutamate ligase domain LKW27_18895 PF08245 Mur ligase middle domain LKW27_18900 PF00953 Glycosyl transferase family 4 LKW27_18900 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 LKW27_18905 PF01225 Mur ligase family, catalytic domain LKW27_18905 PF02875 Mur ligase family, glutamate ligase domain LKW27_18905 PF08245 Mur ligase middle domain LKW27_18910 PF02875 Mur ligase family, glutamate ligase domain LKW27_18910 PF08245 Mur ligase middle domain LKW27_18915 PF00905 Penicillin binding protein transpeptidase domain LKW27_18915 PF03717 Penicillin-binding Protein dimerisation domain LKW27_18920 PF04999 Cell division protein FtsL LKW27_18925 PF01795 MraW methylase family LKW27_18930 PF02381 MraZ protein, putative antitoxin-like LKW27_18935 PF07724 AAA domain (Cdc48 subfamily) LKW27_18935 PF00004 ATPase family associated with various cellular activities (AAA) LKW27_18940 PF00227 Proteasome subunit LKW27_18950 PF01258 Prokaryotic dksA/traR C4-type zinc finger LKW27_18955 PF02492 CobW/HypB/UreG, nucleotide-binding domain LKW27_18955 PF07683 Cobalamin synthesis protein cobW C-terminal domain LKW27_18960 PF08447 PAS fold LKW27_18960 PF05231 MASE1 LKW27_18960 PF08448 PAS fold LKW27_18960 PF00990 Diguanylate cyclase, GGDEF domain LKW27_18960 PF13426 PAS domain LKW27_18960 PF00563 EAL domain LKW27_18965 PF17785 PUA-like domain LKW27_18965 PF10672 S-adenosylmethionine-dependent methyltransferase LKW27_18975 PF00672 HAMP domain LKW27_18975 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LKW27_18975 PF12729 Four helix bundle sensory module for signal transduction LKW27_18980 PF02638 Glycosyl hydrolase-like 10 LKW27_18985 PF02899 Phage integrase, N-terminal SAM-like domain LKW27_18985 PF00589 Phage integrase family LKW27_18995 PF01678 Diaminopimelate epimerase LKW27_19000 PF02798 Glutathione S-transferase, N-terminal domain LKW27_19020 PF01494 FAD binding domain LKW27_19030 PF00849 RNA pseudouridylate synthase LKW27_19030 PF01479 S4 domain LKW27_19035 PF05987 Bacterial protein of unknown function (DUF898) LKW27_19050 PF16537 Type II secretion system protein B LKW27_19055 PF13401 AAA domain LKW27_19055 PF01471 Putative peptidoglycan binding domain LKW27_19060 PF00501 AMP-binding enzyme LKW27_19065 PF00005 ABC transporter LKW27_19065 PF12399 Branched-chain amino acid ATP-binding cassette transporter LKW27_19070 PF02653 Branched-chain amino acid transport system / permease component LKW27_19075 PF11862 Domain of unknown function (DUF3382) LKW27_19075 PF02653 Branched-chain amino acid transport system / permease component LKW27_19085 PF00005 ABC transporter LKW27_19090 PF00501 AMP-binding enzyme LKW27_19090 PF14535 AMP-binding enzyme C-terminal domain LKW27_19095 PF03401 Tripartite tricarboxylate transporter family receptor LKW27_19100 PF03401 Tripartite tricarboxylate transporter family receptor LKW27_19120 PF13673 Acetyltransferase (GNAT) domain LKW27_19120 PF13302 Acetyltransferase (GNAT) domain LKW27_19120 PF00117 Glutamine amidotransferase class-I LKW27_19120 PF00958 GMP synthase C terminal domain LKW27_19120 PF03352 Methyladenine glycosylase LKW27_19135 PF02203 Tar ligand binding domain homologue LKW27_19135 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LKW27_19135 PF00672 HAMP domain LKW27_19145 PF07687 Peptidase dimerisation domain LKW27_19145 PF01546 Peptidase family M20/M25/M40 LKW27_19150 PF01546 Peptidase family M20/M25/M40 LKW27_19150 PF07687 Peptidase dimerisation domain LKW27_19160 PF04879 Molybdopterin oxidoreductase Fe4S4 domain LKW27_19160 PF00384 Molybdopterin oxidoreductase LKW27_19160 PF01568 Molydopterin dinucleotide binding domain LKW27_19185 PF07690 Major Facilitator Superfamily LKW27_19195 PF07969 Amidohydrolase family LKW27_19200 PF00857 Isochorismatase family LKW27_19205 PF02678 Pirin LKW27_19205 PF17954 Quercetinase C-terminal cupin domain LKW27_19210 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LKW27_19210 PF03466 LysR substrate binding domain LKW27_19215 PF03466 LysR substrate binding domain LKW27_19215 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LKW27_19220 PF03480 Bacterial extracellular solute-binding protein, family 7 LKW27_19225 PF00920 Dehydratase family LKW27_19235 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component LKW27_19240 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component LKW27_19280 PF04717 Type VI secretion system, phage-baseplate injector LKW27_19280 PF06715 Gp5 C-terminal repeat (3 copies) LKW27_19300 PF03006 Haemolysin-III related LKW27_19305 PF00563 EAL domain LKW27_19305 PF13185 GAF domain LKW27_19305 PF00990 Diguanylate cyclase, GGDEF domain LKW27_19315 PF03401 Tripartite tricarboxylate transporter family receptor LKW27_19345 PF07690 Major Facilitator Superfamily LKW27_19355 PF01814 Hemerythrin HHE cation binding domain LKW27_19365 PF03477 ATP cone domain LKW27_19365 PF02867 Ribonucleotide reductase, barrel domain LKW27_19365 PF00317 Ribonucleotide reductase, all-alpha domain LKW27_19370 PF00484 Carbonic anhydrase LKW27_19375 PF09312 SurA N-terminal domain LKW27_19375 PF00639 PPIC-type PPIASE domain LKW27_19380 PF02665 Nitrate reductase gamma subunit LKW27_19390 PF14711 Respiratory nitrate reductase beta C-terminal LKW27_19390 PF13247 4Fe-4S dicluster domain LKW27_19395 PF00384 Molybdopterin oxidoreductase LKW27_19395 PF01568 Molydopterin dinucleotide binding domain LKW27_19395 PF14710 Respiratory nitrate reductase alpha N-terminal LKW27_19400 PF07690 Major Facilitator Superfamily LKW27_19405 PF07690 Major Facilitator Superfamily LKW27_19415 PF00593 TonB dependent receptor LKW27_19415 PF07715 TonB-dependent Receptor Plug Domain LKW27_19430 PF00072 Response regulator receiver domain LKW27_19430 PF00196 Bacterial regulatory proteins, luxR family LKW27_19435 PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term LKW27_19435 PF07730 Histidine kinase LKW27_19435 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LKW27_19435 PF00672 HAMP domain LKW27_19445 PF02308 MgtC family LKW27_19455 PF03707 Bacterial signalling protein N terminal repeat LKW27_19455 PF00990 Diguanylate cyclase, GGDEF domain LKW27_19455 PF00563 EAL domain LKW27_19460 PF00551 Formyl transferase LKW27_19465 PF03466 LysR substrate binding domain LKW27_19465 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LKW27_19475 PF02913 FAD linked oxidases, C-terminal domain LKW27_19475 PF01565 FAD binding domain LKW27_19500 PF04286 Protein of unknown function (DUF445) LKW27_19510 PF01212 Beta-eliminating lyase LKW27_19515 PF01168 Alanine racemase, N-terminal domain LKW27_19520 PF00437 Type II/IV secretion system protein LKW27_19525 PF13545 Crp-like helix-turn-helix domain LKW27_19525 PF00027 Cyclic nucleotide-binding domain LKW27_19530 PF00437 Type II/IV secretion system protein LKW27_19535 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase LKW27_19535 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase LKW27_19540 PF04972 BON domain LKW27_19545 PF13580 SIS domain LKW27_19550 PF02021 Uncharacterised protein family UPF0102 LKW27_19555 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases LKW27_19560 PF00012 Hsp70 protein LKW27_19570 PF01196 Ribosomal protein L17 LKW27_19575 PF01000 RNA polymerase Rpb3/RpoA insert domain LKW27_19575 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain LKW27_19575 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain LKW27_19580 PF00163 Ribosomal protein S4/S9 N-terminal domain LKW27_19580 PF01479 S4 domain LKW27_19585 PF00411 Ribosomal protein S11 LKW27_19590 PF00416 Ribosomal protein S13/S18 LKW27_19595 PF00444 Ribosomal protein L36 LKW27_19600 PF00344 SecY translocase LKW27_19605 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A LKW27_19610 PF00327 Ribosomal protein L30p/L7e LKW27_19615 PF00333 Ribosomal protein S5, N-terminal domain LKW27_19615 PF03719 Ribosomal protein S5, C-terminal domain LKW27_19620 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast LKW27_19625 PF00347 Ribosomal protein L6 LKW27_19630 PF00410 Ribosomal protein S8 LKW27_19635 PF00253 Ribosomal protein S14p/S29e LKW27_19640 PF00281 Ribosomal protein L5 LKW27_19640 PF00673 ribosomal L5P family C-terminus LKW27_19645 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 LKW27_19650 PF00238 Ribosomal protein L14p/L23e LKW27_19655 PF01266 FAD dependent oxidoreductase LKW27_19655 PF16901 C-terminal domain of alpha-glycerophosphate oxidase LKW27_19670 PF00528 Binding-protein-dependent transport system inner membrane component LKW27_19675 PF00528 Binding-protein-dependent transport system inner membrane component LKW27_19680 PF00005 ABC transporter LKW27_19680 PF08402 TOBE domain LKW27_19685 PF17912 MalK OB fold domain LKW27_19685 PF00005 ABC transporter LKW27_19690 PF00455 DeoR C terminal sensor domain LKW27_19690 PF08220 DeoR-like helix-turn-helix domain LKW27_19695 PF00370 FGGY family of carbohydrate kinases, N-terminal domain LKW27_19695 PF02782 FGGY family of carbohydrate kinases, C-terminal domain LKW27_19700 PF03807 NADP oxidoreductase coenzyme F420-dependent LKW27_19700 PF14748 Pyrroline-5-carboxylate reductase dimerisation LKW27_19710 PF00535 Glycosyl transferase family 2 LKW27_19725 PF01040 UbiA prenyltransferase family LKW27_19730 PF00210 Ferritin-like domain LKW27_19735 PF03466 LysR substrate binding domain LKW27_19735 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LKW27_19740 PF00270 DEAD/DEAH box helicase LKW27_19740 PF00271 Helicase conserved C-terminal domain LKW27_19740 PF17191 RecG wedge domain LKW27_19745 PF11871 Domain of unknown function (DUF3391) LKW27_19745 PF01966 HD domain LKW27_19760 PF02547 Queuosine biosynthesis protein LKW27_19780 PF03167 Uracil DNA glycosylase superfamily LKW27_19785 PF00218 Indole-3-glycerol phosphate synthase LKW27_19795 PF00591 Glycosyl transferase family, a/b domain LKW27_19795 PF02885 Glycosyl transferase family, helical bundle domain LKW27_19800 PF01810 LysE type translocator LKW27_19805 PF00117 Glutamine amidotransferase class-I LKW27_19830 PF10145 Phage-related minor tail protein LKW27_19830 PF01551 Peptidase family M23 LKW27_19830 PF01464 Transglycosylase SLT domain LKW27_19835 PF13847 Methyltransferase domain LKW27_19835 PF10119 Predicted methyltransferase regulatory domain LKW27_19840 PF00263 Bacterial type II and III secretion system protein LKW27_19840 PF03958 Bacterial type II/III secretion system short domain LKW27_19890 PF01514 Secretory protein of YscJ/FliF family LKW27_19905 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain LKW27_19905 PF02874 ATP synthase alpha/beta family, beta-barrel domain LKW27_19905 PF18269 T3SS EscN ATPase C-terminal domain LKW27_19935 PF03211 Pectate lyase LKW27_19955 PF01312 FlhB HrpN YscU SpaS Family LKW27_19960 PF00771 FHIPEP family LKW27_19975 PF00813 FliP family LKW27_19980 PF01313 Bacterial export proteins, family 3 LKW27_20000 PF12833 Helix-turn-helix domain LKW27_20010 PF04715 Anthranilate synthase component I, N terminal region LKW27_20010 PF00425 chorismate binding enzyme LKW27_20020 PF13419 Haloacid dehalogenase-like hydrolase LKW27_20030 PF00834 Ribulose-phosphate 3 epimerase family LKW27_20035 PF04379 ApaG domain LKW27_20050 PF04107 Glutamate-cysteine ligase family 2(GCS2) LKW27_20060 PF00586 AIR synthase related protein, N-terminal domain LKW27_20060 PF02769 AIR synthase related protein, C-terminal domain LKW27_20070 PF04608 Phosphatidylglycerophosphatase A LKW27_20075 PF02464 Competence-damaged protein LKW27_20080 PF00672 HAMP domain LKW27_20080 PF02203 Tar ligand binding domain homologue LKW27_20080 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LKW27_20085 PF01740 STAS domain LKW27_20085 PF00916 Sulfate permease family LKW27_20090 PF07517 SecA DEAD-like domain LKW27_20090 PF01043 SecA preprotein cross-linking domain LKW27_20090 PF07516 SecA Wing and Scaffold domain LKW27_20090 PF02810 SEC-C motif LKW27_20100 PF06472 ABC transporter transmembrane region 2 LKW27_20100 PF00005 ABC transporter LKW27_20110 PF02926 THUMP domain LKW27_20110 PF01170 Putative RNA methylase family UPF0020 LKW27_20115 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LKW27_20115 PF00672 HAMP domain LKW27_20115 PF02743 Cache domain LKW27_20120 PF03073 TspO/MBR family LKW27_20125 PF04552 Sigma-54, DNA binding domain LKW27_20125 PF04963 Sigma-54 factor, core binding domain LKW27_20125 PF00309 Sigma-54 factor, Activator interacting domain (AID) LKW27_20130 PF00005 ABC transporter LKW27_20140 PF01323 DSBA-like thioredoxin domain LKW27_20140 PF00085 Thioredoxin LKW27_20150 PF00750 tRNA synthetases class I (R) LKW27_20150 PF05746 DALR anticodon binding domain LKW27_20150 PF03485 Arginyl tRNA synthetase N terminal domain LKW27_20165 PF01011 PQQ enzyme repeat LKW27_20175 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LKW27_20175 PF03466 LysR substrate binding domain LKW27_20180 PF01274 Malate synthase LKW27_20185 PF02203 Tar ligand binding domain homologue LKW27_20185 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LKW27_20185 PF00672 HAMP domain LKW27_20195 PF01361 Tautomerase enzyme LKW27_20200 PF07690 Major Facilitator Superfamily LKW27_20205 PF13230 Glutamine amidotransferases class-II LKW27_20220 PF00589 Phage integrase family LKW27_20280 PF08361 MAATS-type transcriptional repressor, C-terminal region LKW27_20280 PF00440 Bacterial regulatory proteins, tetR family LKW27_20285 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion LKW27_20285 PF00529 HlyD membrane-fusion protein of T1SS LKW27_20290 PF00873 AcrB/AcrD/AcrF family LKW27_20295 PF02321 Outer membrane efflux protein LKW27_20300 PF01344 Kelch motif LKW27_20305 PF13442 Cytochrome C oxidase, cbb3-type, subunit III LKW27_20355 PF00270 DEAD/DEAH box helicase LKW27_20355 PF08494 DEAD/H associated LKW27_20355 PF00271 Helicase conserved C-terminal domain LKW27_20360 PF04675 DNA ligase N terminus LKW27_20360 PF01068 ATP dependent DNA ligase domain LKW27_20360 PF04679 ATP dependent DNA ligase C terminal region LKW27_20365 PF04679 ATP dependent DNA ligase C terminal region LKW27_20365 PF01068 ATP dependent DNA ligase domain LKW27_20365 PF04675 DNA ligase N terminus LKW27_20370 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain LKW27_20375 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain LKW27_20375 PF02874 ATP synthase alpha/beta family, beta-barrel domain LKW27_20380 PF00231 ATP synthase LKW27_20385 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain LKW27_20385 PF00306 ATP synthase alpha/beta chain, C terminal domain LKW27_20385 PF02874 ATP synthase alpha/beta family, beta-barrel domain LKW27_20390 PF00213 ATP synthase delta (OSCP) subunit LKW27_20395 PF00430 ATP synthase B/B' CF(0) LKW27_20400 PF00137 ATP synthase subunit C LKW27_20405 PF00119 ATP synthase A chain LKW27_20415 PF04359 Protein of unknown function (DUF493) LKW27_20420 PF03099 Biotin/lipoate A/B protein ligase family LKW27_20425 PF04055 Radical SAM superfamily LKW27_20425 PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family LKW27_20445 PF00486 Transcriptional regulatory protein, C terminal LKW27_20445 PF00072 Response regulator receiver domain LKW27_20450 PF13492 GAF domain LKW27_20450 PF00512 His Kinase A (phospho-acceptor) domain LKW27_20450 PF02702 Osmosensitive K+ channel His kinase sensor domain LKW27_20450 PF13493 Domain of unknown function (DUF4118) LKW27_20450 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LKW27_20455 PF02669 K+-transporting ATPase, c chain LKW27_20465 PF03814 Potassium-transporting ATPase A subunit LKW27_20480 PF00391 PEP-utilising enzyme, mobile domain LKW27_20480 PF02896 PEP-utilising enzyme, TIM barrel domain LKW27_20480 PF05524 PEP-utilising enzyme, N-terminal LKW27_20485 PF00381 PTS HPr component phosphorylation site LKW27_20500 PF00578 AhpC/TSA family LKW27_20510 PF08534 Redoxin LKW27_20515 PF00366 Ribosomal protein S17 LKW27_20520 PF00831 Ribosomal L29 protein LKW27_20525 PF00252 Ribosomal protein L16p/L10e LKW27_20530 PF07650 KH domain LKW27_20530 PF00189 Ribosomal protein S3, C-terminal domain LKW27_20535 PF00237 Ribosomal protein L22p/L17e LKW27_20540 PF00203 Ribosomal protein S19 LKW27_20545 PF00181 Ribosomal Proteins L2, RNA binding domain LKW27_20545 PF03947 Ribosomal Proteins L2, C-terminal domain LKW27_20550 PF00276 Ribosomal protein L23 LKW27_20555 PF00573 Ribosomal protein L4/L1 family LKW27_20560 PF00297 Ribosomal protein L3 LKW27_20565 PF00338 Ribosomal protein S10p/S20e LKW27_20570 PF03144 Elongation factor Tu domain 2 LKW27_20570 PF03143 Elongation factor Tu C-terminal domain LKW27_20570 PF00009 Elongation factor Tu GTP binding domain LKW27_20575 PF14492 Elongation Factor G, domain II LKW27_20575 PF03764 Elongation factor G, domain IV LKW27_20575 PF00009 Elongation factor Tu GTP binding domain LKW27_20575 PF03144 Elongation factor Tu domain 2 LKW27_20575 PF00679 Elongation factor G C-terminus LKW27_20580 PF00177 Ribosomal protein S7p/S5e LKW27_20585 PF00164 Ribosomal protein S12/S23 LKW27_20590 PF07943 Penicillin-binding protein 5, C-terminal domain LKW27_20590 PF00768 D-alanyl-D-alanine carboxypeptidase LKW27_20595 PF02129 X-Pro dipeptidyl-peptidase (S15 family) LKW27_20610 PF03653 Uncharacterised protein family (UPF0093) LKW27_20615 PF00490 Delta-aminolevulinic acid dehydratase LKW27_20620 PF01544 CorA-like Mg2+ transporter protein LKW27_20625 PF02540 NAD synthase LKW27_20625 PF00117 Glutamine amidotransferase class-I LKW27_20625 PF00958 GMP synthase C terminal domain LKW27_20630 PF01047 MarR family LKW27_20635 PF02321 Outer membrane efflux protein LKW27_20640 PF00529 HlyD membrane-fusion protein of T1SS LKW27_20640 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion LKW27_20645 PF07690 Major Facilitator Superfamily LKW27_20650 PF01738 Dienelactone hydrolase family LKW27_20660 PF01914 MarC family integral membrane protein LKW27_20665 PF00072 Response regulator receiver domain LKW27_20665 PF00486 Transcriptional regulatory protein, C terminal LKW27_20670 PF00512 His Kinase A (phospho-acceptor) domain LKW27_20670 PF00672 HAMP domain LKW27_20670 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LKW27_20675 PF06123 Inner membrane protein CreD LKW27_20695 PF05532 CsbD-like LKW27_20700 PF01507 Phosphoadenosine phosphosulfate reductase family LKW27_20720 PF00005 ABC transporter LKW27_20725 PF02405 Permease MlaE LKW27_20730 PF05199 GMC oxidoreductase LKW27_20730 PF00732 GMC oxidoreductase LKW27_20735 PF01925 Sulfite exporter TauE/SafE LKW27_20740 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LKW27_20740 PF03466 LysR substrate binding domain LKW27_20745 PF03313 Serine dehydratase alpha chain LKW27_20745 PF03315 Serine dehydratase beta chain LKW27_20750 PF00497 Bacterial extracellular solute-binding proteins, family 3 LKW27_20755 PF00528 Binding-protein-dependent transport system inner membrane component LKW27_20760 PF00005 ABC transporter LKW27_20770 PF00905 Penicillin binding protein transpeptidase domain LKW27_20770 PF03717 Penicillin-binding Protein dimerisation domain LKW27_20775 PF04093 rod shape-determining protein MreD LKW27_20790 PF02686 Glu-tRNAGln amidotransferase C subunit LKW27_20795 PF01425 Amidase LKW27_20800 PF02637 GatB domain LKW27_20800 PF02934 GatB/GatE catalytic domain LKW27_20810 PF00156 Phosphoribosyl transferase domain LKW27_20815 PF03372 Endonuclease/Exonuclease/phosphatase family LKW27_20820 PF00248 Aldo/keto reductase family LKW27_20825 PF07690 Major Facilitator Superfamily LKW27_20830 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LKW27_20830 PF03466 LysR substrate binding domain LKW27_20850 PF00753 Metallo-beta-lactamase superfamily LKW27_20855 PF00939 Sodium:sulfate symporter transmembrane region LKW27_20860 PF01435 Peptidase family M48 LKW27_20880 PF07690 Major Facilitator Superfamily LKW27_20885 PF00072 Response regulator receiver domain LKW27_20885 PF00486 Transcriptional regulatory protein, C terminal LKW27_20890 PF00512 His Kinase A (phospho-acceptor) domain LKW27_20890 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LKW27_20890 PF00672 HAMP domain LKW27_20895 PF06779 Uncharacterised MFS-type transporter YbfB LKW27_20900 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LKW27_20900 PF03466 LysR substrate binding domain LKW27_20905 PF03060 Nitronate monooxygenase LKW27_20915 PF00535 Glycosyl transferase family 2 LKW27_20940 PF01063 Amino-transferase class IV LKW27_20950 PF18073 Rubredoxin metal binding domain LKW27_20960 PF02558 Ketopantoate reductase PanE/ApbA LKW27_20960 PF08546 Ketopantoate reductase PanE/ApbA C terminal LKW27_20965 PF02798 Glutathione S-transferase, N-terminal domain LKW27_20965 PF00043 Glutathione S-transferase, C-terminal domain LKW27_20975 PF03401 Tripartite tricarboxylate transporter family receptor LKW27_20985 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle LKW27_20995 PF01168 Alanine racemase, N-terminal domain LKW27_20995 PF00842 Alanine racemase, C-terminal domain LKW27_21000 PF07690 Major Facilitator Superfamily LKW27_21010 PF00255 Glutathione peroxidase LKW27_21040 PF02754 Cysteine-rich domain LKW27_21040 PF13183 4Fe-4S dicluster domain LKW27_21050 PF01565 FAD binding domain LKW27_21055 PF06715 Gp5 C-terminal repeat (3 copies) LKW27_21055 PF04717 Type VI secretion system, phage-baseplate injector LKW27_21090 PF08450 SMP-30/Gluconolactonase/LRE-like region LKW27_21095 PF00909 Ammonium Transporter Family LKW27_21100 PF00543 Nitrogen regulatory protein P-II LKW27_21110 PF13335 Magnesium chelatase, subunit ChlI C-terminal LKW27_21110 PF01078 Magnesium chelatase, subunit ChlI LKW27_21115 PF02954 Bacterial regulatory protein, Fis family LKW27_21115 PF00158 Sigma-54 interaction domain LKW27_21115 PF00072 Response regulator receiver domain LKW27_21120 PF00512 His Kinase A (phospho-acceptor) domain LKW27_21120 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LKW27_21125 PF03401 Tripartite tricarboxylate transporter family receptor LKW27_21130 PF02203 Tar ligand binding domain homologue LKW27_21130 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LKW27_21130 PF00672 HAMP domain LKW27_21140 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LKW27_21140 PF03466 LysR substrate binding domain LKW27_21145 PF00970 Oxidoreductase FAD-binding domain LKW27_21145 PF00175 Oxidoreductase NAD-binding domain LKW27_21165 PF00563 EAL domain LKW27_21165 PF03707 Bacterial signalling protein N terminal repeat LKW27_21165 PF00990 Diguanylate cyclase, GGDEF domain LKW27_21170 PF05506 Domain of unknown function (DUF756) LKW27_21170 PF04185 Phosphoesterase family LKW27_21185 PF01204 Trehalase LKW27_21195 PF02310 B12 binding domain LKW27_21195 PF02607 B12 binding domain LKW27_21195 PF02965 Vitamin B12 dependent methionine synthase, activation domain LKW27_21195 PF00809 Pterin binding enzyme LKW27_21195 PF02574 Homocysteine S-methyltransferase LKW27_21210 PF07729 FCD domain LKW27_21210 PF00392 Bacterial regulatory proteins, gntR family LKW27_21220 PF00528 Binding-protein-dependent transport system inner membrane component LKW27_21225 PF00528 Binding-protein-dependent transport system inner membrane component LKW27_21230 PF00005 ABC transporter LKW27_21235 PF04115 Ureidoglycolate lyase LKW27_21245 PF00497 Bacterial extracellular solute-binding proteins, family 3 LKW27_21250 PF03466 LysR substrate binding domain LKW27_21250 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LKW27_21270 PF03401 Tripartite tricarboxylate transporter family receptor LKW27_21275 PF13378 Enolase C-terminal domain-like LKW27_21275 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain LKW27_21280 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LKW27_21280 PF03466 LysR substrate binding domain LKW27_21295 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LKW27_21310 PF07715 TonB-dependent Receptor Plug Domain LKW27_21310 PF00593 TonB dependent receptor LKW27_21315 PF01425 Amidase LKW27_21320 PF03976 Polyphosphate kinase 2 (PPK2) LKW27_21330 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase LKW27_21330 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain LKW27_21365 PF00570 HRDC domain LKW27_21365 PF09382 RQC domain LKW27_21365 PF16124 RecQ zinc-binding LKW27_21365 PF00271 Helicase conserved C-terminal domain LKW27_21365 PF00270 DEAD/DEAH box helicase LKW27_21370 PF03401 Tripartite tricarboxylate transporter family receptor LKW27_21375 PF02515 CoA-transferase family III LKW27_21385 PF02771 Acyl-CoA dehydrogenase, N-terminal domain LKW27_21385 PF02770 Acyl-CoA dehydrogenase, middle domain LKW27_21385 PF00441 Acyl-CoA dehydrogenase, C-terminal domain LKW27_21390 PF03466 LysR substrate binding domain LKW27_21390 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LKW27_21395 PF02574 Homocysteine S-methyltransferase LKW27_21395 PF00809 Pterin binding enzyme LKW27_21395 PF02965 Vitamin B12 dependent methionine synthase, activation domain LKW27_21395 PF02310 B12 binding domain LKW27_21395 PF02607 B12 binding domain LKW27_21400 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LKW27_21400 PF00512 His Kinase A (phospho-acceptor) domain LKW27_21405 PF02954 Bacterial regulatory protein, Fis family LKW27_21405 PF00072 Response regulator receiver domain LKW27_21405 PF00158 Sigma-54 interaction domain LKW27_21420 PF07690 Major Facilitator Superfamily LKW27_21425 PF02203 Tar ligand binding domain homologue LKW27_21425 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LKW27_21425 PF00672 HAMP domain LKW27_21430 PF00355 Rieske [2Fe-2S] domain LKW27_21435 PF13577 SnoaL-like domain LKW27_21440 PF00355 Rieske [2Fe-2S] domain LKW27_21440 PF00848 Ring hydroxylating alpha subunit (catalytic domain) LKW27_21445 PF00111 2Fe-2S iron-sulfur cluster binding domain LKW27_21445 PF00175 Oxidoreductase NAD-binding domain LKW27_21445 PF00970 Oxidoreductase FAD-binding domain LKW27_21455 PF04851 Type III restriction enzyme, res subunit LKW27_21455 PF08774 VRR-NUC domain LKW27_21470 PF18273 Type III R-M EcoP15I C-terminal domain LKW27_21470 PF01555 DNA methylase LKW27_21480 PF00271 Helicase conserved C-terminal domain LKW27_21480 PF00176 SNF2 family N-terminal domain LKW27_21490 PF03922 OmpW family LKW27_21510 PF02423 Ornithine cyclodeaminase/mu-crystallin family LKW27_21520 PF07690 Major Facilitator Superfamily LKW27_21525 PF14497 Glutathione S-transferase, C-terminal domain LKW27_21525 PF02798 Glutathione S-transferase, N-terminal domain LKW27_21530 PF01557 Fumarylacetoacetate (FAA) hydrolase family LKW27_21535 PF07883 Cupin domain LKW27_21540 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LKW27_21540 PF03466 LysR substrate binding domain LKW27_21545 PF00441 Acyl-CoA dehydrogenase, C-terminal domain LKW27_21545 PF02770 Acyl-CoA dehydrogenase, middle domain LKW27_21545 PF18158 Adaptive response protein AidB N-terminal domain LKW27_21555 PF13291 ACT domain LKW27_21555 PF00291 Pyridoxal-phosphate dependent enzyme LKW27_21560 PF04349 Periplasmic glucan biosynthesis protein, MdoG LKW27_21570 PF06508 Queuosine biosynthesis protein QueC LKW27_21575 PF17297 Phosphoenolpyruvate carboxykinase N-terminal domain LKW27_21575 PF00821 Phosphoenolpyruvate carboxykinase C-terminal P-loop domain LKW27_21585 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LKW27_21585 PF03466 LysR substrate binding domain LKW27_21595 PF00582 Universal stress protein family LKW27_21600 PF00440 Bacterial regulatory proteins, tetR family LKW27_21605 PF03466 LysR substrate binding domain LKW27_21605 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LKW27_21610 PF01266 FAD dependent oxidoreductase LKW27_21615 PF02525 Flavodoxin-like fold LKW27_21625 PF00561 alpha/beta hydrolase fold LKW27_21630 PF01613 Flavin reductase like domain LKW27_21635 PF03776 Septum formation topological specificity factor MinE LKW27_21640 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain LKW27_21645 PF03775 Septum formation inhibitor MinC, C-terminal domain LKW27_21645 PF05209 Septum formation inhibitor MinC, N-terminal domain LKW27_21650 PF03421 YopJ Serine/Threonine acetyltransferase LKW27_21655 PF01066 CDP-alcohol phosphatidyltransferase LKW27_21665 PF02423 Ornithine cyclodeaminase/mu-crystallin family LKW27_21670 PF00491 Arginase family LKW27_21675 PF00501 AMP-binding enzyme LKW27_21675 PF13193 AMP-binding enzyme C-terminal domain LKW27_21685 PF01435 Peptidase family M48 LKW27_21690 PF09339 IclR helix-turn-helix domain LKW27_21690 PF01614 Bacterial transcriptional regulator LKW27_21695 PF00171 Aldehyde dehydrogenase family LKW27_21705 PF01494 FAD binding domain LKW27_21715 PF00005 ABC transporter LKW27_21720 PF12706 Beta-lactamase superfamily domain LKW27_21730 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LKW27_21730 PF03466 LysR substrate binding domain LKW27_21745 PF00132 Bacterial transferase hexapeptide (six repeats) LKW27_21755 PF00672 HAMP domain LKW27_21755 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LKW27_21755 PF02203 Tar ligand binding domain homologue LKW27_21765 PF00860 Permease family LKW27_21775 PF13336 Acetyl-CoA hydrolase/transferase C-terminal domain LKW27_21775 PF02550 Acetyl-CoA hydrolase/transferase N-terminal domain LKW27_21780 PF03061 Thioesterase superfamily LKW27_21785 PF01923 Cobalamin adenosyltransferase LKW27_21800 PF02913 FAD linked oxidases, C-terminal domain LKW27_21800 PF01565 FAD binding domain LKW27_21865 PF03543 Yersinia/Haemophilus virulence surface antigen LKW27_21890 PF01613 Flavin reductase like domain LKW27_21910 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases LKW27_21910 PF01077 Nitrite and sulphite reductase 4Fe-4S domain LKW27_21925 PF11760 Cobalamin synthesis G N-terminal LKW27_21925 PF01890 Cobalamin synthesis G C-terminus LKW27_21925 PF11761 Cobalamin biosynthesis central region LKW27_21935 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases LKW27_21940 PF01888 CbiD LKW27_21945 PF02570 Precorrin-8X methylmutase LKW27_21950 PF01903 CbiX LKW27_21955 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases LKW27_21960 PF00135 Carboxylesterase family LKW27_21975 PF01040 UbiA prenyltransferase family LKW27_21980 PF04030 D-arabinono-1,4-lactone oxidase LKW27_21980 PF01565 FAD binding domain LKW27_21985 PF00106 short chain dehydrogenase LKW27_22000 PF07992 Pyridine nucleotide-disulphide oxidoreductase LKW27_22000 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster LKW27_22015 PF02195 ParB-like nuclease domain LKW27_22015 PF17762 HTH domain found in ParB protein LKW27_22025 PF13614 AAA domain LKW27_22030 PF01810 LysE type translocator LKW27_22035 PF02527 rRNA small subunit methyltransferase G LKW27_22040 PF01134 Glucose inhibited division protein A LKW27_22040 PF13932 GidA associated domain LKW27_22045 PF03358 NADPH-dependent FMN reductase LKW27_22050 PF03692 Putative zinc- or iron-chelating domain LKW27_22055 PF02798 Glutathione S-transferase, N-terminal domain LKW27_22055 PF00043 Glutathione S-transferase, C-terminal domain LKW27_22060 PF00528 Binding-protein-dependent transport system inner membrane component LKW27_22065 PF00005 ABC transporter LKW27_22085 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LKW27_22085 PF00512 His Kinase A (phospho-acceptor) domain LKW27_22090 PF00072 Response regulator receiver domain LKW27_22090 PF00486 Transcriptional regulatory protein, C terminal LKW27_22100 PF00529 HlyD membrane-fusion protein of T1SS LKW27_22100 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion LKW27_22105 PF00873 AcrB/AcrD/AcrF family LKW27_22125 PF00672 HAMP domain LKW27_22125 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LKW27_22125 PF02203 Tar ligand binding domain homologue LKW27_22130 PF00403 Heavy-metal-associated domain LKW27_22140 PF00376 MerR family regulatory protein LKW27_22140 PF09278 MerR, DNA binding LKW27_22145 PF02803 Thiolase, C-terminal domain LKW27_22145 PF00108 Thiolase, N-terminal domain LKW27_22170 PF07670 Nucleoside recognition LKW27_22175 PF04381 Putative exonuclease, RdgC