locus-tag class description CQB05_00085 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain CQB05_00085 PF00378 Enoyl-CoA hydratase/isomerase CQB05_00085 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain CQB05_00090 PF02803 Thiolase, C-terminal domain CQB05_00090 PF00108 Thiolase, N-terminal domain CQB05_00095 PF03061 Thioesterase superfamily CQB05_00100 PF02771 Acyl-CoA dehydrogenase, N-terminal domain CQB05_00100 PF02770 Acyl-CoA dehydrogenase, middle domain CQB05_00100 PF12806 Acetyl-CoA dehydrogenase C-terminal like CQB05_00100 PF00441 Acyl-CoA dehydrogenase, C-terminal domain CQB05_00125 PF16884 N-terminal domain of oxidoreductase CQB05_00125 PF00107 Zinc-binding dehydrogenase CQB05_00130 PF13673 Acetyltransferase (GNAT) domain CQB05_00140 PF00106 short chain dehydrogenase CQB05_00145 PF00106 short chain dehydrogenase CQB05_00150 PF13416 Bacterial extracellular solute-binding protein CQB05_00165 PF01037 Lrp/AsnC ligand binding domain CQB05_00180 PF00463 Isocitrate lyase family CQB05_00185 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) CQB05_00185 PF02824 TGS domain CQB05_00185 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain CQB05_00185 PF03129 Anticodon binding domain CQB05_00190 PF05198 Translation initiation factor IF-3, N-terminal domain CQB05_00190 PF00707 Translation initiation factor IF-3, C-terminal domain CQB05_00195 PF01632 Ribosomal protein L35 CQB05_00200 PF00453 Ribosomal protein L20 CQB05_00205 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain CQB05_00205 PF01409 tRNA synthetases class II core domain (F) CQB05_00215 PF00216 Bacterial DNA-binding protein CQB05_00220 PF13411 MerR HTH family regulatory protein CQB05_00240 PF12464 Maltose acetyltransferase CQB05_00240 PF14602 Hexapeptide repeat of succinyl-transferase CQB05_00245 PF00664 ABC transporter transmembrane region CQB05_00245 PF00005 ABC transporter CQB05_00250 PF02040 Arsenical pump membrane protein CQB05_00255 PF00563 EAL domain CQB05_00255 PF03707 Bacterial signalling protein N terminal repeat CQB05_00255 PF00990 Diguanylate cyclase, GGDEF domain CQB05_00260 PF02694 Uncharacterised BCR, YnfA/UPF0060 family CQB05_00270 PF02463 RecF/RecN/SMC N terminal domain CQB05_00270 PF06470 SMC proteins Flexible Hinge Domain CQB05_00280 PF00533 BRCA1 C Terminus (BRCT) domain CQB05_00280 PF03120 NAD-dependent DNA ligase OB-fold domain CQB05_00280 PF03119 NAD-dependent DNA ligase C4 zinc finger domain CQB05_00280 PF01653 NAD-dependent DNA ligase adenylation domain CQB05_00280 PF12826 Helix-hairpin-helix motif CQB05_00285 PF04717 Type VI secretion system, phage-baseplate injector CQB05_00295 PF03527 RHS protein CQB05_00295 PF05593 RHS Repeat CQB05_00320 PF00271 Helicase conserved C-terminal domain CQB05_00320 PF00176 SNF2 family N-terminal domain CQB05_00320 PF12419 SNF2 Helicase protein CQB05_00335 PF00877 NlpC/P60 family CQB05_00340 PF07995 Glucose / Sorbosone dehydrogenase CQB05_00350 PF16177 Acetyl-coenzyme A synthetase N-terminus CQB05_00350 PF13193 AMP-binding enzyme C-terminal domain CQB05_00350 PF00501 AMP-binding enzyme CQB05_00355 PF03707 Bacterial signalling protein N terminal repeat CQB05_00355 PF00990 Diguanylate cyclase, GGDEF domain CQB05_00355 PF00563 EAL domain CQB05_00365 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain CQB05_00365 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain CQB05_00370 PF12833 Helix-turn-helix domain CQB05_00370 PF00730 HhH-GPD superfamily base excision DNA repair protein CQB05_00370 PF02805 Metal binding domain of Ada CQB05_00370 PF06029 AlkA N-terminal domain CQB05_00375 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I CQB05_00375 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain CQB05_00375 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III CQB05_00375 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II CQB05_00385 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) CQB05_00385 PF00534 Glycosyl transferases group 1 CQB05_00390 PF13380 CoA binding domain CQB05_00390 PF13607 Succinyl-CoA ligase like flavodoxin domain CQB05_00390 PF00583 Acetyltransferase (GNAT) family CQB05_00395 PF02321 Outer membrane efflux protein CQB05_00410 PF00440 Bacterial regulatory proteins, tetR family CQB05_00410 PF17922 Tetracyclin repressor-like, C-terminal domain CQB05_00415 PF01625 Peptide methionine sulfoxide reductase CQB05_00425 PF00005 ABC transporter CQB05_00450 PF00593 TonB dependent receptor CQB05_00450 PF07715 TonB-dependent Receptor Plug Domain CQB05_00455 PF01266 FAD dependent oxidoreductase CQB05_00460 PF00171 Aldehyde dehydrogenase family CQB05_00470 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region CQB05_00470 PF01243 Pyridoxamine 5'-phosphate oxidase CQB05_00495 PF00356 Bacterial regulatory proteins, lacI family CQB05_00505 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component CQB05_00510 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component CQB05_00515 PF03480 Bacterial extracellular solute-binding protein, family 7 CQB05_00520 PF00920 Dehydratase family CQB05_00525 PF01081 KDPG and KHG aldolase CQB05_00535 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily CQB05_00550 PF00106 short chain dehydrogenase CQB05_00575 PF00005 ABC transporter CQB05_00580 PF03466 LysR substrate binding domain CQB05_00580 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CQB05_00585 PF03358 NADPH-dependent FMN reductase CQB05_00595 PF08267 Cobalamin-independent synthase, N-terminal domain CQB05_00595 PF01717 Cobalamin-independent synthase, Catalytic domain CQB05_00650 PF17862 AAA+ lid domain CQB05_00650 PF00004 ATPase family associated with various cellular activities (AAA) CQB05_00650 PF01434 Peptidase family M41 CQB05_00760 PF08681 Protein of unknown function (DUF1778) CQB05_00800 PF03527 RHS protein CQB05_00800 PF05593 RHS Repeat CQB05_00825 PF04717 Type VI secretion system, phage-baseplate injector CQB05_00840 PF17657 Bacterial DNA polymerase III alpha subunit finger domain CQB05_00840 PF07733 Bacterial DNA polymerase III alpha NTPase domain CQB05_00840 PF14579 Helix-hairpin-helix motif CQB05_00840 PF02811 PHP domain CQB05_00845 PF00589 Phage integrase family CQB05_00845 PF02899 Phage integrase, N-terminal SAM-like domain CQB05_00850 PF10411 Disulfide bond isomerase protein N-terminus CQB05_00850 PF13098 Thioredoxin-like domain CQB05_00865 PF01464 Transglycosylase SLT domain CQB05_00865 PF10145 Phage-related minor tail protein CQB05_00865 PF01551 Peptidase family M23 CQB05_00885 PF00437 Type II/IV secretion system protein CQB05_00900 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain CQB05_00900 PF00437 Type II/IV secretion system protein CQB05_00915 PF00437 Type II/IV secretion system protein CQB05_00965 PF03421 YopJ Serine/Threonine acetyltransferase CQB05_00980 PF03695 Uncharacterised protein family (UPF0149) CQB05_00980 PF02810 SEC-C motif CQB05_00985 PF13700 Domain of unknown function (DUF4158) CQB05_00985 PF01526 Tn3 transposase DDE domain CQB05_01000 PF00239 Resolvase, N terminal domain CQB05_01000 PF02796 Helix-turn-helix domain of resolvase CQB05_01090 PF04434 SWIM zinc finger CQB05_01090 PF00176 SNF2 family N-terminal domain CQB05_01090 PF00271 Helicase conserved C-terminal domain CQB05_01145 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain CQB05_01160 PF05170 AsmA family CQB05_01165 PF17657 Bacterial DNA polymerase III alpha subunit finger domain CQB05_01165 PF07733 Bacterial DNA polymerase III alpha NTPase domain CQB05_01165 PF14579 Helix-hairpin-helix motif CQB05_01165 PF02811 PHP domain CQB05_01180 PF00719 Inorganic pyrophosphatase CQB05_01185 PF03030 Inorganic H+ pyrophosphatase CQB05_01205 PF00171 Aldehyde dehydrogenase family CQB05_01210 PF02535 ZIP Zinc transporter CQB05_01215 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain CQB05_01215 PF02777 Iron/manganese superoxide dismutases, C-terminal domain CQB05_01230 PF06463 Molybdenum Cofactor Synthesis C CQB05_01230 PF04055 Radical SAM superfamily CQB05_01235 PF12804 MobA-like NTP transferase domain CQB05_01245 PF03453 MoeA N-terminal region (domain I and II) CQB05_01245 PF00994 Probable molybdopterin binding domain CQB05_01245 PF03454 MoeA C-terminal region (domain IV) CQB05_01260 PF00075 RNase H CQB05_01265 PF08241 Methyltransferase domain CQB05_01270 PF16123 Hydroxyacylglutathione hydrolase C-terminus CQB05_01270 PF00753 Metallo-beta-lactamase superfamily CQB05_01275 PF01476 LysM domain CQB05_01275 PF01464 Transglycosylase SLT domain CQB05_01295 PF02132 RecR protein CQB05_01295 PF13662 Toprim domain CQB05_01300 PF02575 YbaB/EbfC DNA-binding family CQB05_01315 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CQB05_01315 PF17200 Single Cache domain 2 CQB05_01315 PF00672 HAMP domain CQB05_01340 PF00085 Thioredoxin CQB05_01345 PF07497 Rho termination factor, RNA-binding domain CQB05_01345 PF07498 Rho termination factor, N-terminal domain CQB05_01345 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain CQB05_01350 PF13476 AAA domain CQB05_01355 PF00149 Calcineurin-like phosphoesterase CQB05_01355 PF12320 Type 5 capsule protein repressor C-terminal domain CQB05_01360 PF01197 Ribosomal protein L31 CQB05_01370 PF01554 MatE CQB05_01380 PF00072 Response regulator receiver domain CQB05_01380 PF00486 Transcriptional regulatory protein, C terminal CQB05_01385 PF01895 PhoU domain CQB05_01390 PF00005 ABC transporter CQB05_01395 PF00528 Binding-protein-dependent transport system inner membrane component CQB05_01400 PF00528 Binding-protein-dependent transport system inner membrane component CQB05_01405 PF12849 PBP superfamily domain CQB05_01410 PF02541 Ppx/GppA phosphatase family CQB05_01420 PF00300 Histidine phosphatase superfamily (branch 1) CQB05_01435 PF00563 EAL domain CQB05_01435 PF03707 Bacterial signalling protein N terminal repeat CQB05_01435 PF00990 Diguanylate cyclase, GGDEF domain CQB05_01440 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain CQB05_01440 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III CQB05_01440 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II CQB05_01440 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I CQB05_01445 PF00809 Pterin binding enzyme CQB05_01450 PF17862 AAA+ lid domain CQB05_01450 PF00004 ATPase family associated with various cellular activities (AAA) CQB05_01450 PF01434 Peptidase family M41 CQB05_01450 PF06480 FtsH Extracellular CQB05_01455 PF01728 FtsJ-like methyltransferase CQB05_01460 PF01985 CRS1 / YhbY (CRM) domain CQB05_01475 PF01272 Transcription elongation factor, GreA/GreB, C-term CQB05_01475 PF03449 Transcription elongation factor, N-terminal CQB05_01480 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain CQB05_01480 PF02142 MGS-like domain CQB05_01480 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain CQB05_01485 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain CQB05_01485 PF00117 Glutamine amidotransferase class-I CQB05_01495 PF00324 Amino acid permease CQB05_01515 PF00171 Aldehyde dehydrogenase family CQB05_01525 PF02770 Acyl-CoA dehydrogenase, middle domain CQB05_01525 PF00441 Acyl-CoA dehydrogenase, C-terminal domain CQB05_01525 PF02771 Acyl-CoA dehydrogenase, N-terminal domain CQB05_01535 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase CQB05_01535 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase CQB05_01540 PF00080 Copper/zinc superoxide dismutase (SODC) CQB05_01545 PF00593 TonB dependent receptor CQB05_01545 PF07715 TonB-dependent Receptor Plug Domain CQB05_01550 PF03401 Tripartite tricarboxylate transporter family receptor CQB05_01560 PF04295 D-galactarate dehydratase / Altronate hydrolase, C terminus CQB05_01560 PF08666 SAF domain CQB05_01565 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component CQB05_01575 PF03480 Bacterial extracellular solute-binding protein, family 7 CQB05_01585 PF01370 NAD dependent epimerase/dehydratase family CQB05_01595 PF03401 Tripartite tricarboxylate transporter family receptor CQB05_01600 PF00701 Dihydrodipicolinate synthetase family CQB05_01620 PF00082 Subtilase family CQB05_01640 PF09278 MerR, DNA binding CQB05_01640 PF00376 MerR family regulatory protein CQB05_01645 PF07690 Major Facilitator Superfamily CQB05_01660 PF01361 Tautomerase enzyme CQB05_01665 PF00043 Glutathione S-transferase, C-terminal domain CQB05_01665 PF02798 Glutathione S-transferase, N-terminal domain CQB05_01670 PF03466 LysR substrate binding domain CQB05_01670 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CQB05_01675 PF00180 Isocitrate/isopropylmalate dehydrogenase CQB05_01695 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain CQB05_01695 PF02777 Iron/manganese superoxide dismutases, C-terminal domain CQB05_01700 PF13742 OB-fold nucleic acid binding domain CQB05_01700 PF02601 Exonuclease VII, large subunit CQB05_01705 PF01618 MotA/TolQ/ExbB proton channel family CQB05_01710 PF02472 Biopolymer transport protein ExbD/TolR CQB05_01715 PF02606 Tetraacyldisaccharide-1-P 4'-kinase CQB05_01720 PF03966 Trm112p-like protein CQB05_01725 PF02348 Cytidylyltransferase CQB05_01730 PF05191 Adenylate kinase, active site lid CQB05_01740 PF17763 Glutaminase/Asparaginase C-terminal domain CQB05_01740 PF00710 Asparaginase, N-terminal CQB05_01745 PF00717 Peptidase S24-like CQB05_01745 PF01726 LexA DNA binding domain CQB05_01755 PF00270 DEAD/DEAH box helicase CQB05_01755 PF04408 Helicase associated domain (HA2) CQB05_01755 PF11898 Domain of unknown function (DUF3418) CQB05_01755 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold CQB05_01755 PF00271 Helicase conserved C-terminal domain CQB05_01765 PF01266 FAD dependent oxidoreductase CQB05_01770 PF00583 Acetyltransferase (GNAT) family CQB05_01770 PF00696 Amino acid kinase family CQB05_01780 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CQB05_01780 PF03466 LysR substrate binding domain CQB05_01790 PF02600 Disulfide bond formation protein DsbB CQB05_01795 PF12857 TOBE-like domain CQB05_01795 PF17850 CysA C-terminal regulatory domain CQB05_01795 PF00005 ABC transporter CQB05_01800 PF00528 Binding-protein-dependent transport system inner membrane component CQB05_01805 PF00528 Binding-protein-dependent transport system inner membrane component CQB05_01825 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CQB05_01825 PF03466 LysR substrate binding domain CQB05_01830 PF02525 Flavodoxin-like fold CQB05_01835 PF03358 NADPH-dependent FMN reductase CQB05_01840 PF03180 NLPA lipoprotein CQB05_01845 PF00672 HAMP domain CQB05_01845 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CQB05_01845 PF02203 Tar ligand binding domain homologue CQB05_01850 PF00528 Binding-protein-dependent transport system inner membrane component CQB05_01855 PF09383 NIL domain CQB05_01855 PF00005 ABC transporter CQB05_01860 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CQB05_01860 PF00512 His Kinase A (phospho-acceptor) domain CQB05_01860 PF08448 PAS fold CQB05_01860 PF13188 PAS domain CQB05_01860 PF00072 Response regulator receiver domain CQB05_01865 PF07690 Major Facilitator Superfamily CQB05_01870 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CQB05_01870 PF03466 LysR substrate binding domain CQB05_01875 PF01451 Low molecular weight phosphotyrosine protein phosphatase CQB05_01885 PF02321 Outer membrane efflux protein CQB05_01890 PF00873 AcrB/AcrD/AcrF family CQB05_01895 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion CQB05_01895 PF00529 HlyD membrane-fusion protein of T1SS CQB05_01900 PF00072 Response regulator receiver domain CQB05_01900 PF00486 Transcriptional regulatory protein, C terminal CQB05_01905 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CQB05_01905 PF18698 Histidine kinase sensor domain CQB05_01905 PF00989 PAS fold CQB05_01905 PF00512 His Kinase A (phospho-acceptor) domain CQB05_01905 PF00672 HAMP domain CQB05_01920 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CQB05_01920 PF03466 LysR substrate binding domain CQB05_01935 PF02735 Ku70/Ku80 beta-barrel domain CQB05_01945 PF06968 Biotin and Thiamin Synthesis associated domain CQB05_01945 PF04055 Radical SAM superfamily CQB05_01960 PF00289 Biotin carboxylase, N-terminal domain CQB05_01960 PF02785 Biotin carboxylase C-terminal domain CQB05_01960 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain CQB05_01970 PF01039 Carboxyl transferase domain CQB05_01990 PF00392 Bacterial regulatory proteins, gntR family CQB05_01990 PF07729 FCD domain CQB05_02000 PF00873 AcrB/AcrD/AcrF family CQB05_02005 PF00529 HlyD membrane-fusion protein of T1SS CQB05_02005 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion CQB05_02010 PF02321 Outer membrane efflux protein CQB05_02050 PF00196 Bacterial regulatory proteins, luxR family CQB05_02050 PF00072 Response regulator receiver domain CQB05_02055 PF02203 Tar ligand binding domain homologue CQB05_02055 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CQB05_02055 PF00672 HAMP domain CQB05_02070 PF05598 Transposase domain (DUF772) CQB05_02070 PF01609 Transposase DDE domain CQB05_02080 PF01207 Dihydrouridine synthase (Dus) CQB05_02085 PF00990 Diguanylate cyclase, GGDEF domain CQB05_02085 PF00563 EAL domain CQB05_02085 PF03707 Bacterial signalling protein N terminal repeat CQB05_02100 PF04060 Putative Fe-S cluster CQB05_02105 PF02203 Tar ligand binding domain homologue CQB05_02105 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CQB05_02105 PF00672 HAMP domain CQB05_02110 PF00155 Aminotransferase class I and II CQB05_02115 PF14805 Tetrahydrodipicolinate N-succinyltransferase N-terminal CQB05_02115 PF14602 Hexapeptide repeat of succinyl-transferase CQB05_02120 PF00437 Type II/IV secretion system protein CQB05_02130 PF05175 Methyltransferase small domain CQB05_02140 PF00106 short chain dehydrogenase CQB05_02145 PF02803 Thiolase, C-terminal domain CQB05_02145 PF00108 Thiolase, N-terminal domain CQB05_02150 PF07167 Poly-beta-hydroxybutyrate polymerase (PhaC) N-terminus CQB05_02165 PF13417 Glutathione S-transferase, N-terminal domain CQB05_02170 PF01557 Fumarylacetoacetate (FAA) hydrolase family CQB05_02180 PF00069 Protein kinase domain CQB05_02185 PF00497 Bacterial extracellular solute-binding proteins, family 3 CQB05_02190 PF00905 Penicillin binding protein transpeptidase domain CQB05_02190 PF00912 Transglycosylase CQB05_02195 PF17785 PUA-like domain CQB05_02195 PF10672 S-adenosylmethionine-dependent methyltransferase CQB05_02210 PF03401 Tripartite tricarboxylate transporter family receptor CQB05_02220 PF07992 Pyridine nucleotide-disulphide oxidoreductase CQB05_02220 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain CQB05_02225 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) CQB05_02225 PF02817 e3 binding domain CQB05_02225 PF00364 Biotin-requiring enzyme CQB05_02230 PF17831 Pyruvate dehydrogenase E1 component middle domain CQB05_02230 PF00456 Transketolase, thiamine diphosphate binding domain CQB05_02235 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CQB05_02235 PF00512 His Kinase A (phospho-acceptor) domain CQB05_02235 PF00989 PAS fold CQB05_02240 PF00196 Bacterial regulatory proteins, luxR family CQB05_02240 PF00072 Response regulator receiver domain CQB05_02245 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain CQB05_02245 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain CQB05_02250 PF01432 Peptidase family M3 CQB05_02260 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) CQB05_02265 PF01180 Dihydroorotate dehydrogenase CQB05_02285 PF01266 FAD dependent oxidoreductase CQB05_02290 PF00850 Histone deacetylase domain CQB05_02305 PF00929 Exonuclease CQB05_02310 PF00111 2Fe-2S iron-sulfur cluster binding domain CQB05_02315 PF00012 Hsp70 protein CQB05_02320 PF07743 HSCB C-terminal oligomerisation domain CQB05_02325 PF01521 Iron-sulphur cluster biosynthesis CQB05_02330 PF01592 NifU-like N terminal domain CQB05_02335 PF00266 Aminotransferase class-V CQB05_02340 PF02082 Transcriptional regulator CQB05_02350 PF00155 Aminotransferase class I and II CQB05_02355 PF02515 CoA-transferase family III CQB05_02365 PF08497 Radical SAM N-terminal CQB05_02365 PF11842 Domain of unknown function (DUF3362) CQB05_02365 PF04055 Radical SAM superfamily CQB05_02370 PF02203 Tar ligand binding domain homologue CQB05_02370 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CQB05_02370 PF00672 HAMP domain CQB05_02380 PF00127 Copper binding proteins, plastocyanin/azurin family CQB05_02385 PF09186 Domain of unknown function (DUF1949) CQB05_02385 PF01205 Uncharacterized protein family UPF0029 CQB05_02400 PF01266 FAD dependent oxidoreductase CQB05_02405 PF01425 Amidase CQB05_02410 PF03401 Tripartite tricarboxylate transporter family receptor CQB05_02430 PF03466 LysR substrate binding domain CQB05_02430 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CQB05_02450 PF07995 Glucose / Sorbosone dehydrogenase CQB05_02455 PF01479 S4 domain CQB05_02555 PF00239 Resolvase, N terminal domain CQB05_02565 PF00239 Resolvase, N terminal domain CQB05_02575 PF05707 Zonular occludens toxin (Zot) CQB05_02850 PF01726 LexA DNA binding domain CQB05_02850 PF00717 Peptidase S24-like CQB05_02880 PF15943 Putative antitoxin of bacterial toxin-antitoxin system, YdaS/YdaT CQB05_02945 PF13840 ACT domain CQB05_02945 PF00696 Amino acid kinase family CQB05_02945 PF01842 ACT domain CQB05_02950 PF09179 TilS substrate binding domain CQB05_02950 PF01171 PP-loop family CQB05_02955 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit CQB05_02960 PF02805 Metal binding domain of Ada CQB05_02960 PF12833 Helix-turn-helix domain CQB05_02960 PF00730 HhH-GPD superfamily base excision DNA repair protein CQB05_02960 PF06029 AlkA N-terminal domain CQB05_02965 PF09190 DALR domain CQB05_02965 PF01406 tRNA synthetases class I (C) catalytic domain CQB05_02980 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD CQB05_02985 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD CQB05_02990 PF00149 Calcineurin-like phosphoesterase CQB05_02995 PF06167 Glucose-regulated metallo-peptidase M90 CQB05_03005 PF03401 Tripartite tricarboxylate transporter family receptor CQB05_03010 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CQB05_03010 PF03466 LysR substrate binding domain CQB05_03020 PF01037 Lrp/AsnC ligand binding domain CQB05_03040 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase CQB05_03045 PF00472 RF-1 domain CQB05_03055 PF01220 Dehydroquinase class II CQB05_03065 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain CQB05_03065 PF00749 tRNA synthetases class I (E and Q), catalytic domain CQB05_03080 PF17932 Tetracyclin repressor-like, C-terminal domain CQB05_03080 PF00440 Bacterial regulatory proteins, tetR family CQB05_03120 PF13091 PLD-like domain CQB05_03120 PF13396 Phospholipase_D-nuclease N-terminal CQB05_03130 PF00849 RNA pseudouridylate synthase CQB05_03150 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CQB05_03150 PF02203 Tar ligand binding domain homologue CQB05_03150 PF00672 HAMP domain CQB05_03155 PF01547 Bacterial extracellular solute-binding protein CQB05_03180 PF00849 RNA pseudouridylate synthase CQB05_03185 PF02308 MgtC family CQB05_03190 PF00376 MerR family regulatory protein CQB05_03190 PF09278 MerR, DNA binding CQB05_03200 PF07690 Major Facilitator Superfamily CQB05_03215 PF13609 Gram-negative porin CQB05_03220 PF01926 50S ribosome-binding GTPase CQB05_03235 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CQB05_03235 PF00512 His Kinase A (phospho-acceptor) domain CQB05_03240 PF01810 LysE type translocator CQB05_03250 PF02463 RecF/RecN/SMC N terminal domain CQB05_03255 PF00205 Thiamine pyrophosphate enzyme, central domain CQB05_03255 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain CQB05_03255 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain CQB05_03260 PF04262 Glutamate-cysteine ligase CQB05_03270 PF08450 SMP-30/Gluconolactonase/LRE-like region CQB05_03280 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CQB05_03280 PF03466 LysR substrate binding domain CQB05_03285 PF00171 Aldehyde dehydrogenase family CQB05_03290 PF13407 Periplasmic binding protein domain CQB05_03295 PF13407 Periplasmic binding protein domain CQB05_03300 PF00005 ABC transporter CQB05_03305 PF02653 Branched-chain amino acid transport system / permease component CQB05_03310 PF00005 ABC transporter CQB05_03315 PF02653 Branched-chain amino acid transport system / permease component CQB05_03320 PF02653 Branched-chain amino acid transport system / permease component CQB05_03325 PF00920 Dehydratase family CQB05_03330 PF00701 Dihydrodipicolinate synthetase family CQB05_03335 PF05035 2-keto-3-deoxy-galactonokinase CQB05_03340 PF01081 KDPG and KHG aldolase CQB05_03345 PF13378 Enolase C-terminal domain-like CQB05_03345 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain CQB05_03360 PF02203 Tar ligand binding domain homologue CQB05_03360 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CQB05_03360 PF00672 HAMP domain CQB05_03370 PF00072 Response regulator receiver domain CQB05_03370 PF01339 CheB methylesterase CQB05_03375 PF00072 Response regulator receiver domain CQB05_03375 PF00486 Transcriptional regulatory protein, C terminal CQB05_03385 PF00989 PAS fold CQB05_03385 PF00512 His Kinase A (phospho-acceptor) domain CQB05_03385 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CQB05_03395 PF00111 2Fe-2S iron-sulfur cluster binding domain CQB05_03410 PF00885 6,7-dimethyl-8-ribityllumazine synthase CQB05_03415 PF01029 NusB family CQB05_03420 PF00155 Aminotransferase class I and II CQB05_03425 PF03061 Thioesterase superfamily CQB05_03430 PF01618 MotA/TolQ/ExbB proton channel family CQB05_03435 PF02472 Biopolymer transport protein ExbD/TolR CQB05_03445 PF00083 Sugar (and other) transporter CQB05_03445 PF07690 Major Facilitator Superfamily CQB05_03450 PF06481 COX Aromatic Rich Motif CQB05_03450 PF00116 Cytochrome C oxidase subunit II, periplasmic domain CQB05_03455 PF00115 Cytochrome C and Quinol oxidase polypeptide I CQB05_03460 PF00510 Cytochrome c oxidase subunit III CQB05_03465 PF03626 Prokaryotic Cytochrome C oxidase subunit IV CQB05_03475 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CQB05_03475 PF00989 PAS fold CQB05_03480 PF00072 Response regulator receiver domain CQB05_03490 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CQB05_03490 PF03466 LysR substrate binding domain CQB05_03510 PF05992 SbmA/BacA-like family CQB05_03515 PF11791 Aconitate B N-terminal domain CQB05_03515 PF06434 Aconitate hydratase 2 N-terminus CQB05_03515 PF00330 Aconitase family (aconitate hydratase) CQB05_03530 PF13649 Methyltransferase domain CQB05_03535 PF00056 lactate/malate dehydrogenase, NAD binding domain CQB05_03535 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain CQB05_03540 PF00392 Bacterial regulatory proteins, gntR family CQB05_03540 PF07702 UTRA domain CQB05_03555 PF02910 Fumarate reductase flavoprotein C-term CQB05_03555 PF00890 FAD binding domain CQB05_03560 PF13085 2Fe-2S iron-sulfur cluster binding domain CQB05_03565 PF03937 Flavinator of succinate dehydrogenase CQB05_03570 PF00285 Citrate synthase, C-terminal domain CQB05_03580 PF13302 Acetyltransferase (GNAT) domain CQB05_03585 PF12833 Helix-turn-helix domain CQB05_03585 PF01965 DJ-1/PfpI family CQB05_03590 PF00107 Zinc-binding dehydrogenase CQB05_03590 PF08240 Alcohol dehydrogenase GroES-like domain CQB05_03595 PF00756 Putative esterase CQB05_03600 PF08019 Phosphoethanolamine transferase EptA/EptB CQB05_03600 PF00884 Sulfatase CQB05_03605 PF00171 Aldehyde dehydrogenase family CQB05_03610 PF00180 Isocitrate/isopropylmalate dehydrogenase CQB05_03615 PF00005 ABC transporter CQB05_03615 PF08352 Oligopeptide/dipeptide transporter, C-terminal region CQB05_03620 PF00528 Binding-protein-dependent transport system inner membrane component CQB05_03620 PF12911 N-terminal TM domain of oligopeptide transport permease C CQB05_03625 PF00528 Binding-protein-dependent transport system inner membrane component CQB05_03635 PF01266 FAD dependent oxidoreductase CQB05_03655 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain CQB05_03660 PF00202 Aminotransferase class-III CQB05_03665 PF01037 Lrp/AsnC ligand binding domain CQB05_03685 PF04055 Radical SAM superfamily CQB05_03715 PF00441 Acyl-CoA dehydrogenase, C-terminal domain CQB05_03715 PF12806 Acetyl-CoA dehydrogenase C-terminal like CQB05_03715 PF02770 Acyl-CoA dehydrogenase, middle domain CQB05_03715 PF02771 Acyl-CoA dehydrogenase, N-terminal domain CQB05_03720 PF00766 Electron transfer flavoprotein FAD-binding domain CQB05_03720 PF01012 Electron transfer flavoprotein domain CQB05_03725 PF01012 Electron transfer flavoprotein domain CQB05_03730 PF00924 Mechanosensitive ion channel CQB05_03730 PF12795 Mechanosensitive ion channel porin domain CQB05_03730 PF12794 Mechanosensitive ion channel inner membrane domain 1 CQB05_03735 PF03421 YopJ Serine/Threonine acetyltransferase CQB05_03740 PF00378 Enoyl-CoA hydratase/isomerase CQB05_03745 PF00850 Histone deacetylase domain CQB05_03750 PF17863 AAA lid domain CQB05_03750 PF07726 ATPase family associated with various cellular activities (AAA) CQB05_03760 PF11992 Domain of unknown function (DUF3488) CQB05_03760 PF13559 Domain of unknown function (DUF4129) CQB05_03760 PF01841 Transglutaminase-like superfamily CQB05_03765 PF13406 Transglycosylase SLT domain CQB05_03775 PF07690 Major Facilitator Superfamily CQB05_03795 PF13458 Periplasmic binding protein CQB05_03810 PF00814 Glycoprotease family CQB05_03820 PF03861 ANTAR domain CQB05_03820 PF00072 Response regulator receiver domain CQB05_03835 PF00528 Binding-protein-dependent transport system inner membrane component CQB05_03840 PF00005 ABC transporter CQB05_03845 PF01872 RibD C-terminal domain CQB05_03860 PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) CQB05_03870 PF01053 Cys/Met metabolism PLP-dependent enzyme CQB05_03925 PF04717 Type VI secretion system, phage-baseplate injector CQB05_03935 PF07690 Major Facilitator Superfamily CQB05_03940 PF17755 UvrA DNA-binding domain CQB05_03960 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CQB05_03960 PF16591 Helical bimodular sensor domain CQB05_03960 PF00672 HAMP domain CQB05_03965 PF01584 CheW-like domain CQB05_03965 PF02895 Signal transducing histidine kinase, homodimeric domain CQB05_03965 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CQB05_03965 PF01627 Hpt domain CQB05_03970 PF01204 Trehalase CQB05_03975 PF01039 Carboxyl transferase domain CQB05_03980 PF00296 Luciferase-like monooxygenase CQB05_03985 PF00571 CBS domain CQB05_03985 PF00478 IMP dehydrogenase / GMP reductase domain CQB05_03990 PF08447 PAS fold CQB05_03990 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CQB05_04000 PF00873 AcrB/AcrD/AcrF family CQB05_04015 PF00672 HAMP domain CQB05_04015 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CQB05_04015 PF02203 Tar ligand binding domain homologue CQB05_04020 PF18267 Rubredoxin NAD+ reductase C-terminal domain CQB05_04020 PF07992 Pyridine nucleotide-disulphide oxidoreductase CQB05_04020 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain CQB05_04020 PF04324 BFD-like [2Fe-2S] binding domain CQB05_04020 PF01077 Nitrite and sulphite reductase 4Fe-4S domain CQB05_04025 PF00355 Rieske [2Fe-2S] domain CQB05_04030 PF00384 Molybdopterin oxidoreductase CQB05_04030 PF04879 Molybdopterin oxidoreductase Fe4S4 domain CQB05_04030 PF01568 Molydopterin dinucleotide binding domain CQB05_04035 PF00591 Glycosyl transferase family, a/b domain CQB05_04035 PF02885 Glycosyl transferase family, helical bundle domain CQB05_04040 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases CQB05_04045 PF00553 Cellulose binding domain CQB05_04045 PF00150 Cellulase (glycosyl hydrolase family 5) CQB05_04050 PF03061 Thioesterase superfamily CQB05_04055 PF00484 Carbonic anhydrase CQB05_04090 PF01165 Ribosomal protein S21 CQB05_04095 PF09424 Yqey-like protein CQB05_04100 PF00043 Glutathione S-transferase, C-terminal domain CQB05_04100 PF02798 Glutathione S-transferase, N-terminal domain CQB05_04110 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CQB05_04110 PF03466 LysR substrate binding domain CQB05_04115 PF00180 Isocitrate/isopropylmalate dehydrogenase CQB05_04120 PF01734 Patatin-like phospholipase CQB05_04125 PF07690 Major Facilitator Superfamily CQB05_04130 PF03466 LysR substrate binding domain CQB05_04130 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CQB05_04135 PF03401 Tripartite tricarboxylate transporter family receptor CQB05_04140 PF08666 SAF domain CQB05_04140 PF04295 D-galactarate dehydratase / Altronate hydrolase, C terminus CQB05_04145 PF00171 Aldehyde dehydrogenase family CQB05_04150 PF03328 HpcH/HpaI aldolase/citrate lyase family CQB05_04160 PF04751 Protein of unknown function (DUF615) CQB05_04165 PF00994 Probable molybdopterin binding domain CQB05_04170 PF00132 Bacterial transferase hexapeptide (six repeats) CQB05_04175 PF00588 SpoU rRNA Methylase family CQB05_04185 PF00005 ABC transporter CQB05_04200 PF00459 Inositol monophosphatase family CQB05_04220 PF00664 ABC transporter transmembrane region CQB05_04220 PF00005 ABC transporter CQB05_04230 PF00072 Response regulator receiver domain CQB05_04235 PF00672 HAMP domain CQB05_04235 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CQB05_04235 PF01627 Hpt domain CQB05_04235 PF00072 Response regulator receiver domain CQB05_04235 PF00512 His Kinase A (phospho-acceptor) domain CQB05_04235 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) CQB05_04280 PF07715 TonB-dependent Receptor Plug Domain CQB05_04280 PF00593 TonB dependent receptor CQB05_04290 PF01624 MutS domain I CQB05_04290 PF05188 MutS domain II CQB05_04290 PF05190 MutS family domain IV CQB05_04290 PF05192 MutS domain III CQB05_04290 PF00488 MutS domain V CQB05_04330 PF13426 PAS domain CQB05_04330 PF00563 EAL domain CQB05_04330 PF08448 PAS fold CQB05_04330 PF08447 PAS fold CQB05_04330 PF05231 MASE1 CQB05_04330 PF00990 Diguanylate cyclase, GGDEF domain CQB05_04335 PF02673 Bacitracin resistance protein BacA CQB05_04340 PF02321 Outer membrane efflux protein CQB05_04345 PF00873 AcrB/AcrD/AcrF family CQB05_04355 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion CQB05_04365 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CQB05_04365 PF06580 Histidine kinase CQB05_04365 PF07694 5TMR of 5TMR-LYT CQB05_04370 PF04397 LytTr DNA-binding domain CQB05_04370 PF00072 Response regulator receiver domain CQB05_04395 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CQB05_04395 PF03459 TOBE domain CQB05_04410 PF00528 Binding-protein-dependent transport system inner membrane component CQB05_04415 PF00005 ABC transporter CQB05_04415 PF03459 TOBE domain CQB05_04420 PF02028 BCCT, betaine/carnitine/choline family transporter CQB05_04425 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) CQB05_04425 PF00128 Alpha amylase, catalytic domain CQB05_04425 PF02806 Alpha amylase, C-terminal all-beta domain CQB05_04430 PF00128 Alpha amylase, catalytic domain CQB05_04430 PF11896 Domain of unknown function (DUF3416) CQB05_04435 PF00128 Alpha amylase, catalytic domain CQB05_04435 PF16657 Maltogenic Amylase, C-terminal domain CQB05_04440 PF05552 Conserved TM helix CQB05_04455 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component CQB05_04465 PF03480 Bacterial extracellular solute-binding protein, family 7 CQB05_04470 PF02779 Transketolase, pyrimidine binding domain CQB05_04470 PF02780 Transketolase, C-terminal domain CQB05_04470 PF13292 1-deoxy-D-xylulose-5-phosphate synthase CQB05_04475 PF00348 Polyprenyl synthetase CQB05_04480 PF02609 Exonuclease VII small subunit CQB05_04485 PF00355 Rieske [2Fe-2S] domain CQB05_04485 PF00848 Ring hydroxylating alpha subunit (catalytic domain) CQB05_04495 PF00581 Rhodanese-like domain CQB05_04500 PF08028 Acyl-CoA dehydrogenase, C-terminal domain CQB05_04500 PF02771 Acyl-CoA dehydrogenase, N-terminal domain CQB05_04505 PF08028 Acyl-CoA dehydrogenase, C-terminal domain CQB05_04505 PF02771 Acyl-CoA dehydrogenase, N-terminal domain CQB05_04505 PF02770 Acyl-CoA dehydrogenase, middle domain CQB05_04515 PF05247 Flagellar transcriptional activator (FlhD) CQB05_04520 PF05280 Flagellar transcriptional activator (FlhC) CQB05_04535 PF01594 AI-2E family transporter CQB05_04540 PF12805 FUSC-like inner membrane protein yccS CQB05_04545 PF00311 Phosphoenolpyruvate carboxylase CQB05_04550 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain CQB05_04550 PF03900 Porphobilinogen deaminase, C-terminal domain CQB05_04570 PF12848 ABC transporter CQB05_04570 PF00005 ABC transporter CQB05_04580 PF01435 Peptidase family M48 CQB05_04590 PF00483 Nucleotidyl transferase CQB05_04600 PF01206 Sulfurtransferase TusA CQB05_04605 PF00293 NUDIX domain CQB05_04605 PF09296 NADH pyrophosphatase-like rudimentary NUDIX domain CQB05_04605 PF09297 NADH pyrophosphatase zinc ribbon domain CQB05_04610 PF00291 Pyridoxal-phosphate dependent enzyme CQB05_04635 PF03466 LysR substrate binding domain CQB05_04635 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CQB05_04640 PF00441 Acyl-CoA dehydrogenase, C-terminal domain CQB05_04640 PF02771 Acyl-CoA dehydrogenase, N-terminal domain CQB05_04640 PF02770 Acyl-CoA dehydrogenase, middle domain CQB05_04645 PF02515 CoA-transferase family III CQB05_04665 PF00970 Oxidoreductase FAD-binding domain CQB05_04665 PF00111 2Fe-2S iron-sulfur cluster binding domain CQB05_04665 PF00175 Oxidoreductase NAD-binding domain CQB05_04675 PF03401 Tripartite tricarboxylate transporter family receptor CQB05_04680 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) CQB05_04685 PF01743 Poly A polymerase head domain CQB05_04685 PF12626 Polymerase A arginine-rich C-terminus CQB05_04685 PF12627 Probable RNA and SrmB- binding site of polymerase A CQB05_04695 PF00308 Bacterial dnaA protein CQB05_04700 PF00586 AIR synthase related protein, N-terminal domain CQB05_04700 PF02769 AIR synthase related protein, C-terminal domain CQB05_04715 PF01965 DJ-1/PfpI family CQB05_04720 PF01965 DJ-1/PfpI family CQB05_04730 PF11799 impB/mucB/samB family C-terminal domain CQB05_04730 PF00817 impB/mucB/samB family CQB05_04755 PF01070 FMN-dependent dehydrogenase CQB05_04765 PF14814 Bifunctional transglycosylase second domain CQB05_04765 PF00905 Penicillin binding protein transpeptidase domain CQB05_04765 PF00912 Transglycosylase CQB05_04770 PF02203 Tar ligand binding domain homologue CQB05_04770 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CQB05_04770 PF00672 HAMP domain CQB05_04800 PF03401 Tripartite tricarboxylate transporter family receptor CQB05_04805 PF00206 Lyase CQB05_04805 PF14698 Argininosuccinate lyase C-terminal CQB05_04810 PF07694 5TMR of 5TMR-LYT CQB05_04810 PF06580 Histidine kinase CQB05_04815 PF04397 LytTr DNA-binding domain CQB05_04815 PF00072 Response regulator receiver domain CQB05_04825 PF00206 Lyase CQB05_04825 PF14698 Argininosuccinate lyase C-terminal CQB05_04835 PF01738 Dienelactone hydrolase family CQB05_04865 PF00497 Bacterial extracellular solute-binding proteins, family 3 CQB05_04870 PF01266 FAD dependent oxidoreductase CQB05_04875 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CQB05_04875 PF03466 LysR substrate binding domain CQB05_04900 PF01612 3'-5' exonuclease CQB05_04900 PF00476 DNA polymerase family A CQB05_04900 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain CQB05_04900 PF01367 5'-3' exonuclease, C-terminal SAM fold CQB05_04910 PF01636 Phosphotransferase enzyme family CQB05_04970 PF13361 UvrD-like helicase C-terminal domain CQB05_04970 PF00580 UvrD/REP helicase N-terminal domain CQB05_04980 PF01546 Peptidase family M20/M25/M40 CQB05_04980 PF07687 Peptidase dimerisation domain CQB05_04985 PF03401 Tripartite tricarboxylate transporter family receptor CQB05_05050 PF00072 Response regulator receiver domain CQB05_05050 PF02954 Bacterial regulatory protein, Fis family CQB05_05050 PF00158 Sigma-54 interaction domain CQB05_05055 PF16736 Single Cache-like CQB05_05055 PF00989 PAS fold CQB05_05055 PF00512 His Kinase A (phospho-acceptor) domain CQB05_05055 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CQB05_05060 PF04963 Sigma-54 factor, core binding domain CQB05_05060 PF00309 Sigma-54 factor, Activator interacting domain (AID) CQB05_05060 PF04552 Sigma-54, DNA binding domain CQB05_05075 PF07690 Major Facilitator Superfamily CQB05_05080 PF13426 PAS domain CQB05_05080 PF08447 PAS fold CQB05_05080 PF05231 MASE1 CQB05_05080 PF00990 Diguanylate cyclase, GGDEF domain CQB05_05080 PF00563 EAL domain CQB05_05080 PF08448 PAS fold CQB05_05085 PF00270 DEAD/DEAH box helicase CQB05_05085 PF00271 Helicase conserved C-terminal domain CQB05_05090 PF00929 Exonuclease CQB05_05095 PF01435 Peptidase family M48 CQB05_05100 PF01329 Pterin 4 alpha carbinolamine dehydratase CQB05_05105 PF03193 RsgA GTPase CQB05_05110 PF17113 Regulatory signalling modulator protein AmpE CQB05_05110 PF03186 CobD/Cbib protein CQB05_05115 PF00293 NUDIX domain CQB05_05120 PF01245 Ribosomal protein L19 CQB05_05125 PF01746 tRNA (Guanine-1)-methyltransferase CQB05_05130 PF01782 RimM N-terminal domain CQB05_05130 PF05239 PRC-barrel domain CQB05_05135 PF00886 Ribosomal protein S16 CQB05_05150 PF01384 Phosphate transporter family CQB05_05155 PF01865 Protein of unknown function DUF47 CQB05_05160 PF00691 OmpA family CQB05_05160 PF01389 OmpA-like transmembrane domain CQB05_05165 PF00005 ABC transporter CQB05_05170 PF00005 ABC transporter CQB05_05170 PF12399 Branched-chain amino acid ATP-binding cassette transporter CQB05_05175 PF11862 Domain of unknown function (DUF3382) CQB05_05175 PF02653 Branched-chain amino acid transport system / permease component CQB05_05180 PF02653 Branched-chain amino acid transport system / permease component CQB05_05185 PF02203 Tar ligand binding domain homologue CQB05_05185 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CQB05_05185 PF00672 HAMP domain CQB05_05190 PF00004 ATPase family associated with various cellular activities (AAA) CQB05_05190 PF16193 AAA C-terminal domain CQB05_05190 PF12002 MgsA AAA+ ATPase C terminal CQB05_05195 PF03167 Uracil DNA glycosylase superfamily CQB05_05210 PF03548 Outer membrane lipoprotein carrier protein LolA CQB05_05220 PF07992 Pyridine nucleotide-disulphide oxidoreductase CQB05_05225 PF00830 Ribosomal L28 family CQB05_05230 PF00471 Ribosomal protein L33 CQB05_05235 PF00392 Bacterial regulatory proteins, gntR family CQB05_05235 PF00155 Aminotransferase class I and II CQB05_05250 PF01029 NusB family CQB05_05250 PF01189 16S rRNA methyltransferase RsmB/F CQB05_05255 PF00544 Pectate lyase CQB05_05270 PF00551 Formyl transferase CQB05_05275 PF04337 Protein of unknown function, DUF480 CQB05_05280 PF02771 Acyl-CoA dehydrogenase, N-terminal domain CQB05_05280 PF02770 Acyl-CoA dehydrogenase, middle domain CQB05_05280 PF00441 Acyl-CoA dehydrogenase, C-terminal domain CQB05_05295 PF00041 Fibronectin type III domain CQB05_05295 PF00704 Glycosyl hydrolases family 18 CQB05_05295 PF00553 Cellulose binding domain CQB05_05305 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CQB05_05305 PF02203 Tar ligand binding domain homologue CQB05_05305 PF00672 HAMP domain CQB05_05310 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component CQB05_05320 PF03480 Bacterial extracellular solute-binding protein, family 7 CQB05_05330 PF06574 FAD synthetase CQB05_05330 PF01687 Riboflavin kinase CQB05_05335 PF06827 Zinc finger found in FPG and IleRS CQB05_05335 PF00133 tRNA synthetases class I (I, L, M and V) CQB05_05335 PF08264 Anticodon-binding domain of tRNA CQB05_05340 PF01252 Signal peptidase (SPase) II CQB05_05350 PF00356 Bacterial regulatory proteins, lacI family CQB05_05360 PF00528 Binding-protein-dependent transport system inner membrane component CQB05_05365 PF00528 Binding-protein-dependent transport system inner membrane component CQB05_05370 PF00005 ABC transporter CQB05_05370 PF08402 TOBE domain CQB05_05375 PF00149 Calcineurin-like phosphoesterase CQB05_05385 PF01609 Transposase DDE domain CQB05_05385 PF05598 Transposase domain (DUF772) CQB05_05390 PF02690 Na+/Pi-cotransporter CQB05_05405 PF03466 LysR substrate binding domain CQB05_05405 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CQB05_05415 PF13593 SBF-like CPA transporter family (DUF4137) CQB05_05430 PF00107 Zinc-binding dehydrogenase CQB05_05430 PF08240 Alcohol dehydrogenase GroES-like domain CQB05_05435 PF00892 EamA-like transporter family CQB05_05505 PF05593 RHS Repeat CQB05_05505 PF14220 Domain of unknown function (DUF4329) CQB05_05505 PF03527 RHS protein CQB05_05530 PF04717 Type VI secretion system, phage-baseplate injector CQB05_05560 PF07690 Major Facilitator Superfamily CQB05_05580 PF00005 ABC transporter CQB05_05585 PF00005 ABC transporter CQB05_05585 PF12399 Branched-chain amino acid ATP-binding cassette transporter CQB05_05595 PF02653 Branched-chain amino acid transport system / permease component CQB05_05605 PF00375 Sodium:dicarboxylate symporter family CQB05_05630 PF01292 Prokaryotic cytochrome b561 CQB05_05645 PF02785 Biotin carboxylase C-terminal domain CQB05_05645 PF00289 Biotin carboxylase, N-terminal domain CQB05_05645 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain CQB05_05645 PF00364 Biotin-requiring enzyme CQB05_05650 PF02682 Carboxyltransferase domain, subdomain C and D CQB05_05655 PF07286 Protein of unknown function (DUF1445) CQB05_05660 PF03746 LamB/YcsF family CQB05_05680 PF01494 FAD binding domain CQB05_05685 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CQB05_05685 PF00512 His Kinase A (phospho-acceptor) domain CQB05_05685 PF00672 HAMP domain CQB05_05690 PF01070 FMN-dependent dehydrogenase CQB05_05715 PF00563 EAL domain CQB05_05715 PF08447 PAS fold CQB05_05715 PF00990 Diguanylate cyclase, GGDEF domain CQB05_05715 PF08448 PAS fold CQB05_05720 PF00072 Response regulator receiver domain CQB05_05725 PF00512 His Kinase A (phospho-acceptor) domain CQB05_05725 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CQB05_05725 PF00072 Response regulator receiver domain CQB05_05725 PF01627 Hpt domain CQB05_05730 PF00547 Urease, gamma subunit CQB05_05740 PF00699 Urease beta subunit CQB05_05745 PF00449 Urease alpha-subunit, N-terminal domain CQB05_05745 PF01979 Amidohydrolase family CQB05_05755 PF02814 UreE urease accessory protein, N-terminal domain CQB05_05755 PF05194 UreE urease accessory protein, C-terminal domain CQB05_05760 PF01730 UreF CQB05_05765 PF02492 CobW/HypB/UreG, nucleotide-binding domain CQB05_05780 PF00004 ATPase family associated with various cellular activities (AAA) CQB05_05810 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CQB05_05810 PF00512 His Kinase A (phospho-acceptor) domain CQB05_05825 PF13426 PAS domain CQB05_05825 PF00990 Diguanylate cyclase, GGDEF domain CQB05_05825 PF00563 EAL domain CQB05_05830 PF01739 CheR methyltransferase, SAM binding domain CQB05_05830 PF03705 CheR methyltransferase, all-alpha domain CQB05_05840 PF00072 Response regulator receiver domain CQB05_05840 PF01339 CheB methylesterase CQB05_05845 PF07963 Prokaryotic N-terminal methylation motif CQB05_05845 PF14245 Type IV pilin PilA CQB05_05850 PF14245 Type IV pilin PilA CQB05_05850 PF07963 Prokaryotic N-terminal methylation motif CQB05_05855 PF05567 Neisseria PilC beta-propeller domain CQB05_05875 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region CQB05_05875 PF01872 RibD C-terminal domain CQB05_05885 PF00115 Cytochrome C and Quinol oxidase polypeptide I CQB05_05920 PF00072 Response regulator receiver domain CQB05_05920 PF13426 PAS domain CQB05_05920 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CQB05_05950 PF04545 Sigma-70, region 4 CQB05_05950 PF04542 Sigma-70 region 2 CQB05_05970 PF00106 short chain dehydrogenase CQB05_05990 PF01725 Ham1 family CQB05_05995 PF03725 3' exoribonuclease family, domain 2 CQB05_05995 PF01138 3' exoribonuclease family, domain 1 CQB05_06005 PF03793 PASTA domain CQB05_06005 PF00069 Protein kinase domain CQB05_06010 PF08340 Domain of unknown function (DUF1732) CQB05_06010 PF03755 YicC-like family, N-terminal region CQB05_06015 PF00625 Guanylate kinase CQB05_06020 PF01192 RNA polymerase Rpb6 CQB05_06025 PF02824 TGS domain CQB05_06025 PF04607 Region found in RelA / SpoT proteins CQB05_06025 PF13291 ACT domain CQB05_06055 PF03422 Carbohydrate binding module (family 6) CQB05_06055 PF00331 Glycosyl hydrolase family 10 CQB05_06055 PF00553 Cellulose binding domain CQB05_06060 PF00196 Bacterial regulatory proteins, luxR family CQB05_06060 PF00072 Response regulator receiver domain CQB05_06070 PF01628 HrcA protein C terminal domain CQB05_06070 PF03444 Winged helix-turn-helix transcription repressor, HrcA DNA-binding CQB05_06075 PF00239 Resolvase, N terminal domain CQB05_06120 PF01513 ATP-NAD kinase CQB05_06125 PF02463 RecF/RecN/SMC N terminal domain CQB05_06130 PF03668 P-loop ATPase protein family CQB05_06135 PF14815 NUDIX domain CQB05_06135 PF10576 Iron-sulfur binding domain of endonuclease III CQB05_06135 PF00633 Helix-hairpin-helix motif CQB05_06135 PF00730 HhH-GPD superfamily base excision DNA repair protein CQB05_06145 PF06827 Zinc finger found in FPG and IleRS CQB05_06145 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain CQB05_06145 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain CQB05_06160 PF00288 GHMP kinases N terminal domain CQB05_06160 PF08544 GHMP kinases C terminal CQB05_06170 PF14572 Phosphoribosyl synthetase-associated domain CQB05_06170 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase CQB05_06175 PF14693 Ribosomal protein TL5, C-terminal domain CQB05_06175 PF01386 Ribosomal L25p family CQB05_06180 PF01195 Peptidyl-tRNA hydrolase CQB05_06185 PF00037 4Fe-4S binding domain CQB05_06190 PF00528 Binding-protein-dependent transport system inner membrane component CQB05_06195 PF12911 N-terminal TM domain of oligopeptide transport permease C CQB05_06195 PF00528 Binding-protein-dependent transport system inner membrane component CQB05_06200 PF08352 Oligopeptide/dipeptide transporter, C-terminal region CQB05_06200 PF00005 ABC transporter CQB05_06205 PF00005 ABC transporter CQB05_06205 PF08352 Oligopeptide/dipeptide transporter, C-terminal region CQB05_06215 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle CQB05_06230 PF13378 Enolase C-terminal domain-like CQB05_06230 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain CQB05_06235 PF03401 Tripartite tricarboxylate transporter family receptor CQB05_06240 PF00356 Bacterial regulatory proteins, lacI family CQB05_06240 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family CQB05_06270 PF01227 GTP cyclohydrolase I CQB05_06275 PF13091 PLD-like domain CQB05_06290 PF00293 NUDIX domain CQB05_06300 PF00152 tRNA synthetases class II (D, K and N) CQB05_06300 PF01336 OB-fold nucleic acid binding domain CQB05_06300 PF02938 GAD domain CQB05_06320 PF03109 ABC1 family CQB05_06335 PF01209 ubiE/COQ5 methyltransferase family CQB05_06345 PF00072 Response regulator receiver domain CQB05_06345 PF00990 Diguanylate cyclase, GGDEF domain CQB05_06360 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain CQB05_06360 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain CQB05_06365 PF13416 Bacterial extracellular solute-binding protein CQB05_06370 PF00528 Binding-protein-dependent transport system inner membrane component CQB05_06375 PF00528 Binding-protein-dependent transport system inner membrane component CQB05_06380 PF00005 ABC transporter CQB05_06380 PF17912 MalK OB fold domain CQB05_06390 PF03009 Glycerophosphoryl diester phosphodiesterase family CQB05_06395 PF00924 Mechanosensitive ion channel CQB05_06395 PF12794 Mechanosensitive ion channel inner membrane domain 1 CQB05_06395 PF12795 Mechanosensitive ion channel porin domain CQB05_06400 PF03401 Tripartite tricarboxylate transporter family receptor CQB05_06435 PF01488 Shikimate / quinate 5-dehydrogenase CQB05_06435 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain CQB05_06435 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain CQB05_06440 PF00472 RF-1 domain CQB05_06440 PF03462 PCRF domain CQB05_06450 PF00462 Glutaredoxin CQB05_06455 PF05362 Lon protease (S16) C-terminal proteolytic domain CQB05_06455 PF02190 ATP-dependent protease La (LON) substrate-binding domain CQB05_06455 PF00004 ATPase family associated with various cellular activities (AAA) CQB05_06460 PF00571 CBS domain CQB05_06460 PF03471 Transporter associated domain CQB05_06460 PF01595 Cyclin M transmembrane N-terminal domain CQB05_06465 PF01464 Transglycosylase SLT domain CQB05_06465 PF11873 Membrane-bound lytic murein transglycosylase C, N-terminal domain CQB05_06470 PF04073 Aminoacyl-tRNA editing domain CQB05_06470 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) CQB05_06470 PF03129 Anticodon binding domain CQB05_06475 PF00293 NUDIX domain CQB05_06480 PF01472 PUA domain CQB05_06480 PF00696 Amino acid kinase family CQB05_06485 PF01926 50S ribosome-binding GTPase CQB05_06485 PF01018 GTP1/OBG CQB05_06490 PF01016 Ribosomal L27 protein CQB05_06495 PF00829 Ribosomal prokaryotic L21 protein CQB05_06500 PF00348 Polyprenyl synthetase CQB05_06510 PF01546 Peptidase family M20/M25/M40 CQB05_06510 PF07687 Peptidase dimerisation domain CQB05_06515 PF03401 Tripartite tricarboxylate transporter family receptor CQB05_06520 PF03466 LysR substrate binding domain CQB05_06520 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CQB05_06525 PF00437 Type II/IV secretion system protein CQB05_06525 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain CQB05_06530 PF00482 Type II secretion system (T2SS), protein F CQB05_06535 PF06750 Bacterial Peptidase A24 N-terminal domain CQB05_06535 PF01478 Type IV leader peptidase family CQB05_06540 PF01121 Dephospho-CoA kinase CQB05_06545 PF07072 Cell division protein CQB05_06550 PF03884 DNA gyrase inhibitor YacG CQB05_06555 PF00293 NUDIX domain CQB05_06565 PF01960 ArgJ family CQB05_06570 PF07517 SecA DEAD-like domain CQB05_06570 PF01043 SecA preprotein cross-linking domain CQB05_06570 PF07516 SecA Wing and Scaffold domain CQB05_06570 PF02810 SEC-C motif CQB05_06575 PF01476 LysM domain CQB05_06575 PF08525 Opacity-associated protein A N-terminal motif CQB05_06575 PF01551 Peptidase family M23 CQB05_06590 PF04386 Stringent starvation protein B CQB05_06595 PF02798 Glutathione S-transferase, N-terminal domain CQB05_06595 PF00043 Glutathione S-transferase, C-terminal domain CQB05_06600 PF02167 Cytochrome C1 family CQB05_06610 PF10399 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal CQB05_06610 PF00355 Rieske [2Fe-2S] domain CQB05_06615 PF01741 Large-conductance mechanosensitive channel, MscL CQB05_06620 PF04166 Pyridoxal phosphate biosynthetic protein PdxA CQB05_06625 PF00005 ABC transporter CQB05_06630 PF12704 MacB-like periplasmic core domain CQB05_06630 PF02687 FtsX-like permease family CQB05_06640 PF17768 RecJ OB domain CQB05_06640 PF01368 DHH family CQB05_06640 PF02272 DHHA1 domain CQB05_06650 PF00155 Aminotransferase class I and II CQB05_06655 PF07690 Major Facilitator Superfamily CQB05_06660 PF02811 PHP domain CQB05_06665 PF01300 Telomere recombination CQB05_06675 PF02163 Peptidase family M50 CQB05_06680 PF00579 tRNA synthetases class I (W and Y) CQB05_06685 PF03527 RHS protein CQB05_06685 PF05593 RHS Repeat CQB05_06685 PF15606 Bacterial toxin 34 CQB05_06710 PF00202 Aminotransferase class-III CQB05_06740 PF13434 L-lysine 6-monooxygenase (NADPH-requiring) CQB05_06745 PF00005 ABC transporter CQB05_06745 PF00664 ABC transporter transmembrane region CQB05_06755 PF00551 Formyl transferase CQB05_06765 PF07715 TonB-dependent Receptor Plug Domain CQB05_06765 PF00593 TonB dependent receptor CQB05_06770 PF00550 Phosphopantetheine attachment site CQB05_06770 PF13193 AMP-binding enzyme C-terminal domain CQB05_06770 PF00501 AMP-binding enzyme CQB05_06770 PF00975 Thioesterase domain CQB05_06770 PF00668 Condensation domain CQB05_06775 PF00668 Condensation domain CQB05_06775 PF00550 Phosphopantetheine attachment site CQB05_06775 PF00501 AMP-binding enzyme CQB05_06775 PF13193 AMP-binding enzyme C-terminal domain CQB05_06780 PF00975 Thioesterase domain CQB05_06780 PF00550 Phosphopantetheine attachment site CQB05_06780 PF00668 Condensation domain CQB05_06780 PF13193 AMP-binding enzyme C-terminal domain CQB05_06780 PF00501 AMP-binding enzyme CQB05_06790 PF00550 Phosphopantetheine attachment site CQB05_06790 PF00668 Condensation domain CQB05_06790 PF13193 AMP-binding enzyme C-terminal domain CQB05_06790 PF00501 AMP-binding enzyme CQB05_06800 PF00550 Phosphopantetheine attachment site CQB05_06800 PF00501 AMP-binding enzyme CQB05_06800 PF13193 AMP-binding enzyme C-terminal domain CQB05_06800 PF00975 Thioesterase domain CQB05_06800 PF00668 Condensation domain CQB05_06805 PF03621 MbtH-like protein CQB05_06825 PF00012 Hsp70 protein CQB05_06830 PF00012 Hsp70 protein CQB05_06865 PF00654 Voltage gated chloride channel CQB05_06875 PF04717 Type VI secretion system, phage-baseplate injector CQB05_06880 PF00675 Insulinase (Peptidase family M16) CQB05_06880 PF05193 Peptidase M16 inactive domain CQB05_06885 PF00528 Binding-protein-dependent transport system inner membrane component CQB05_06890 PF00528 Binding-protein-dependent transport system inner membrane component CQB05_06895 PF00497 Bacterial extracellular solute-binding proteins, family 3 CQB05_06905 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain CQB05_06910 PF00920 Dehydratase family CQB05_06925 PF00563 EAL domain CQB05_06925 PF03707 Bacterial signalling protein N terminal repeat CQB05_06925 PF00990 Diguanylate cyclase, GGDEF domain CQB05_06955 PF02403 Seryl-tRNA synthetase N-terminal domain CQB05_06955 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) CQB05_06960 PF00291 Pyridoxal-phosphate dependent enzyme CQB05_06960 PF13291 ACT domain CQB05_06970 PF00571 CBS domain CQB05_06970 PF01595 Cyclin M transmembrane N-terminal domain CQB05_06970 PF03471 Transporter associated domain CQB05_06975 PF02401 LytB protein CQB05_06980 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase CQB05_06985 PF04002 RadC-like JAB domain CQB05_07005 PF01713 Smr domain CQB05_07005 PF00488 MutS domain V CQB05_07010 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CQB05_07010 PF00512 His Kinase A (phospho-acceptor) domain CQB05_07010 PF00672 HAMP domain CQB05_07015 PF00072 Response regulator receiver domain CQB05_07015 PF00486 Transcriptional regulatory protein, C terminal CQB05_07030 PF00149 Calcineurin-like phosphoesterase CQB05_07030 PF02872 5'-nucleotidase, C-terminal domain CQB05_07035 PF04717 Type VI secretion system, phage-baseplate injector CQB05_07060 PF05593 RHS Repeat CQB05_07060 PF03527 RHS protein CQB05_07080 PF05593 RHS Repeat CQB05_07080 PF03527 RHS protein CQB05_07105 PF00550 Phosphopantetheine attachment site CQB05_07115 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III CQB05_07115 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal CQB05_07120 PF01554 MatE CQB05_07125 PF00501 AMP-binding enzyme CQB05_07125 PF13193 AMP-binding enzyme C-terminal domain CQB05_07130 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain CQB05_07130 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain CQB05_07155 PF03472 Autoinducer binding domain CQB05_07155 PF00196 Bacterial regulatory proteins, luxR family CQB05_07160 PF00765 Autoinducer synthase CQB05_07165 PF00441 Acyl-CoA dehydrogenase, C-terminal domain CQB05_07165 PF02770 Acyl-CoA dehydrogenase, middle domain CQB05_07165 PF02771 Acyl-CoA dehydrogenase, N-terminal domain CQB05_07180 PF01425 Amidase CQB05_07185 PF13458 Periplasmic binding protein CQB05_07190 PF00005 ABC transporter CQB05_07195 PF12399 Branched-chain amino acid ATP-binding cassette transporter CQB05_07195 PF00005 ABC transporter CQB05_07200 PF11862 Domain of unknown function (DUF3382) CQB05_07200 PF02653 Branched-chain amino acid transport system / permease component CQB05_07205 PF02653 Branched-chain amino acid transport system / permease component CQB05_07210 PF01425 Amidase CQB05_07215 PF00171 Aldehyde dehydrogenase family CQB05_07220 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CQB05_07220 PF03466 LysR substrate binding domain CQB05_07235 PF02634 FdhD/NarQ family CQB05_07240 PF00384 Molybdopterin oxidoreductase CQB05_07245 PF00672 HAMP domain CQB05_07245 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CQB05_07245 PF02203 Tar ligand binding domain homologue CQB05_07250 PF07690 Major Facilitator Superfamily CQB05_07255 PF10609 NUBPL iron-transfer P-loop NTPase CQB05_07270 PF00205 Thiamine pyrophosphate enzyme, central domain CQB05_07270 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain CQB05_07270 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain CQB05_07275 PF09334 tRNA synthetases class I (M) CQB05_07275 PF01588 Putative tRNA binding domain CQB05_07300 PF02616 Segregation and condensation protein ScpA CQB05_07305 PF00890 FAD binding domain CQB05_07305 PF02910 Fumarate reductase flavoprotein C-term CQB05_07310 PF00202 Aminotransferase class-III CQB05_07320 PF00155 Aminotransferase class I and II CQB05_07330 PF01242 6-pyruvoyl tetrahydropterin synthase CQB05_07350 PF04715 Anthranilate synthase component I, N terminal region CQB05_07350 PF00425 chorismate binding enzyme CQB05_07355 PF02445 Quinolinate synthetase A protein CQB05_07360 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain CQB05_07360 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain CQB05_07365 PF02548 Ketopantoate hydroxymethyltransferase CQB05_07370 PF02569 Pantoate-beta-alanine ligase CQB05_07375 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus CQB05_07375 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus CQB05_07380 PF02556 Preprotein translocase subunit SecB CQB05_07385 PF00462 Glutaredoxin CQB05_07390 PF00581 Rhodanese-like domain CQB05_07395 PF00300 Histidine phosphatase superfamily (branch 1) CQB05_07400 PF13180 PDZ domain CQB05_07400 PF03572 Peptidase family S41 CQB05_07405 PF00899 ThiF family CQB05_07415 PF00196 Bacterial regulatory proteins, luxR family CQB05_07415 PF00072 Response regulator receiver domain CQB05_07420 PF05231 MASE1 CQB05_07420 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CQB05_07420 PF07730 Histidine kinase CQB05_07425 PF07043 Protein of unknown function (DUF1328) CQB05_07445 PF10005 zinc-ribbon domain CQB05_07445 PF15887 Putative zinc-binding metallo-peptidase CQB05_07450 PF01467 Cytidylyltransferase-like CQB05_07460 PF05193 Peptidase M16 inactive domain CQB05_07465 PF00675 Insulinase (Peptidase family M16) CQB05_07465 PF05193 Peptidase M16 inactive domain CQB05_07470 PF02881 SRP54-type protein, helical bundle domain CQB05_07470 PF00448 SRP54-type protein, GTPase domain CQB05_07475 PF01557 Fumarylacetoacetate (FAA) hydrolase family CQB05_07485 PF03812 2-keto-3-deoxygluconate permease CQB05_07500 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CQB05_07500 PF00672 HAMP domain CQB05_07500 PF02203 Tar ligand binding domain homologue CQB05_07505 PF12833 Helix-turn-helix domain CQB05_07505 PF01965 DJ-1/PfpI family CQB05_07510 PF01965 DJ-1/PfpI family CQB05_07515 PF03401 Tripartite tricarboxylate transporter family receptor CQB05_07520 PF01554 MatE CQB05_07525 PF01914 MarC family integral membrane protein CQB05_07550 PF00005 ABC transporter CQB05_07550 PF08402 TOBE domain CQB05_07560 PF03466 LysR substrate binding domain CQB05_07560 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CQB05_07570 PF04545 Sigma-70, region 4 CQB05_07570 PF04542 Sigma-70 region 2 CQB05_07570 PF00140 Sigma-70 factor, region 1.2 CQB05_07590 PF02630 SCO1/SenC CQB05_07595 PF01040 UbiA prenyltransferase family CQB05_07600 PF02628 Cytochrome oxidase assembly protein CQB05_07620 PF00510 Cytochrome c oxidase subunit III CQB05_07630 PF04442 Cytochrome c oxidase assembly protein CtaG/Cox11 CQB05_07635 PF00115 Cytochrome C and Quinol oxidase polypeptide I CQB05_07640 PF02790 Cytochrome C oxidase subunit II, transmembrane domain CQB05_07640 PF00116 Cytochrome C oxidase subunit II, periplasmic domain CQB05_07645 PF08241 Methyltransferase domain CQB05_07655 PF00588 SpoU rRNA Methylase family CQB05_07660 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CQB05_07660 PF03466 LysR substrate binding domain CQB05_07675 PF13614 AAA domain CQB05_07680 PF01810 LysE type translocator CQB05_07685 PF02254 TrkA-N domain CQB05_07685 PF00999 Sodium/hydrogen exchanger family CQB05_07690 PF07715 TonB-dependent Receptor Plug Domain CQB05_07690 PF00593 TonB dependent receptor CQB05_07710 PF01292 Prokaryotic cytochrome b561 CQB05_07715 PF12802 MarR family CQB05_07720 PF00672 HAMP domain CQB05_07720 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CQB05_07720 PF02203 Tar ligand binding domain homologue CQB05_07725 PF07690 Major Facilitator Superfamily CQB05_07730 PF13442 Cytochrome C oxidase, cbb3-type, subunit III CQB05_07730 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase CQB05_07730 PF00034 Cytochrome c CQB05_07735 PF00111 2Fe-2S iron-sulfur cluster binding domain CQB05_07735 PF01799 [2Fe-2S] binding domain CQB05_07740 PF01494 FAD binding domain CQB05_07745 PF17645 Arylmalonate decarboxylase CQB05_07750 PF00561 alpha/beta hydrolase fold CQB05_07760 PF00857 Isochorismatase family CQB05_07765 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase CQB05_07765 PF13442 Cytochrome C oxidase, cbb3-type, subunit III CQB05_07765 PF00034 Cytochrome c CQB05_07785 PF00723 Glycosyl hydrolases family 15 CQB05_07790 PF03401 Tripartite tricarboxylate transporter family receptor CQB05_07795 PF02426 Muconolactone delta-isomerase CQB05_07800 PF02667 Short chain fatty acid transporter CQB05_07805 PF00106 short chain dehydrogenase CQB05_07820 PF12146 Serine aminopeptidase, S33 CQB05_07825 PF00108 Thiolase, N-terminal domain CQB05_07825 PF02803 Thiolase, C-terminal domain CQB05_07830 PF01144 Coenzyme A transferase CQB05_07835 PF01144 Coenzyme A transferase CQB05_07840 PF01614 Bacterial transcriptional regulator CQB05_07840 PF09339 IclR helix-turn-helix domain CQB05_07865 PF00034 Cytochrome c CQB05_07870 PF01434 Peptidase family M41 CQB05_07870 PF17862 AAA+ lid domain CQB05_07870 PF00004 ATPase family associated with various cellular activities (AAA) CQB05_07890 PF04357 TamB, inner membrane protein subunit of TAM complex CQB05_07925 PF08521 Two-component sensor kinase N-terminal CQB05_07925 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CQB05_07925 PF00512 His Kinase A (phospho-acceptor) domain CQB05_07930 PF00486 Transcriptional regulatory protein, C terminal CQB05_07930 PF00072 Response regulator receiver domain CQB05_07935 PF13180 PDZ domain CQB05_07950 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily CQB05_07965 PF09704 CRISPR-associated protein (Cas_Cas5) CQB05_07980 PF00296 Luciferase-like monooxygenase CQB05_07985 PF00482 Type II secretion system (T2SS), protein F CQB05_08010 PF00664 ABC transporter transmembrane region CQB05_08010 PF00005 ABC transporter CQB05_08025 PF05981 CreA protein CQB05_08030 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CQB05_08030 PF03466 LysR substrate binding domain CQB05_08040 PF02515 CoA-transferase family III CQB05_08050 PF03401 Tripartite tricarboxylate transporter family receptor CQB05_08060 PF13532 2OG-Fe(II) oxygenase superfamily CQB05_08075 PF06628 Catalase-related immune-responsive CQB05_08075 PF00199 Catalase CQB05_08075 PF18011 C-terminal domain found in long catalases CQB05_08080 PF00072 Response regulator receiver domain CQB05_08080 PF00486 Transcriptional regulatory protein, C terminal CQB05_08085 PF00672 HAMP domain CQB05_08085 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CQB05_08085 PF00512 His Kinase A (phospho-acceptor) domain CQB05_08090 PF01339 CheB methylesterase CQB05_08095 PF03705 CheR methyltransferase, all-alpha domain CQB05_08095 PF01739 CheR methyltransferase, SAM binding domain CQB05_08100 PF00072 Response regulator receiver domain CQB05_08100 PF00512 His Kinase A (phospho-acceptor) domain CQB05_08100 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CQB05_08100 PF01627 Hpt domain CQB05_08100 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) CQB05_08100 PF00672 HAMP domain CQB05_08110 PF08448 PAS fold CQB05_08110 PF00990 Diguanylate cyclase, GGDEF domain CQB05_08120 PF07715 TonB-dependent Receptor Plug Domain CQB05_08120 PF00593 TonB dependent receptor CQB05_08130 PF00528 Binding-protein-dependent transport system inner membrane component CQB05_08135 PF00528 Binding-protein-dependent transport system inner membrane component CQB05_08135 PF12911 N-terminal TM domain of oligopeptide transport permease C CQB05_08140 PF00005 ABC transporter CQB05_08145 PF16124 RecQ zinc-binding CQB05_08145 PF09382 RQC domain CQB05_08145 PF00270 DEAD/DEAH box helicase CQB05_08145 PF00570 HRDC domain CQB05_08145 PF00271 Helicase conserved C-terminal domain CQB05_08160 PF03527 RHS protein CQB05_08160 PF14220 Domain of unknown function (DUF4329) CQB05_08160 PF05593 RHS Repeat CQB05_08160 PF14220 Domain of unknown function (DUF4329) CQB05_08160 PF03527 RHS protein CQB05_08160 PF05593 RHS Repeat CQB05_08165 PF04717 Type VI secretion system, phage-baseplate injector CQB05_08180 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain CQB05_08180 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase CQB05_08185 PF00941 FAD binding domain in molybdopterin dehydrogenase CQB05_08185 PF03450 CO dehydrogenase flavoprotein C-terminal domain CQB05_08190 PF10518 TAT (twin-arginine translocation) pathway signal sequence CQB05_08190 PF01799 [2Fe-2S] binding domain CQB05_08190 PF00111 2Fe-2S iron-sulfur cluster binding domain CQB05_08205 PF00107 Zinc-binding dehydrogenase CQB05_08205 PF13823 Alcohol dehydrogenase GroES-associated CQB05_08205 PF08240 Alcohol dehydrogenase GroES-like domain CQB05_08215 PF00881 Nitroreductase family CQB05_08230 PF00149 Calcineurin-like phosphoesterase CQB05_08230 PF02872 5'-nucleotidase, C-terminal domain CQB05_08235 PF03466 LysR substrate binding domain CQB05_08235 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CQB05_08240 PF03601 Conserved hypothetical protein 698 CQB05_08265 PF03631 Virulence factor BrkB CQB05_08275 PF12146 Serine aminopeptidase, S33 CQB05_08285 PF10070 Uncharacterized protein conserved in bacteria (DUF2309) CQB05_08290 PF00361 Proton-conducting membrane transporter CQB05_08290 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus CQB05_08295 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CQB05_08295 PF03466 LysR substrate binding domain CQB05_08300 PF01380 SIS domain CQB05_08310 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CQB05_08315 PF12804 MobA-like NTP transferase domain CQB05_08315 PF00132 Bacterial transferase hexapeptide (six repeats) CQB05_08320 PF13545 Crp-like helix-turn-helix domain CQB05_08320 PF00027 Cyclic nucleotide-binding domain CQB05_08340 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CQB05_08340 PF03466 LysR substrate binding domain CQB05_08355 PF03702 Anhydro-N-acetylmuramic acid kinase CQB05_08365 PF01521 Iron-sulphur cluster biosynthesis CQB05_08380 PF00380 Ribosomal protein S9/S16 CQB05_08385 PF00572 Ribosomal protein L13 CQB05_08390 PF13360 PQQ-like domain CQB05_08390 PF00069 Protein kinase domain CQB05_08395 PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ CQB05_08400 PF03330 Lytic transglycolase CQB05_08410 PF02219 Methylenetetrahydrofolate reductase CQB05_08415 PF01728 FtsJ-like methyltransferase CQB05_08415 PF01479 S4 domain CQB05_08420 PF00670 S-adenosyl-L-homocysteine hydrolase, NAD binding domain CQB05_08420 PF05221 S-adenosyl-L-homocysteine hydrolase CQB05_08425 PF01757 Acyltransferase family CQB05_08430 PF03144 Elongation factor Tu domain 2 CQB05_08430 PF00009 Elongation factor Tu GTP binding domain CQB05_08430 PF16658 Class II release factor RF3, C-terminal domain CQB05_08440 PF00893 Small Multidrug Resistance protein CQB05_08470 PF00005 ABC transporter CQB05_08475 PF00528 Binding-protein-dependent transport system inner membrane component CQB05_08480 PF00528 Binding-protein-dependent transport system inner membrane component CQB05_08485 PF00497 Bacterial extracellular solute-binding proteins, family 3 CQB05_08490 PF00497 Bacterial extracellular solute-binding proteins, family 3 CQB05_08495 PF03466 LysR substrate binding domain CQB05_08495 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CQB05_08500 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component CQB05_08505 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component CQB05_08510 PF03480 Bacterial extracellular solute-binding protein, family 7 CQB05_08515 PF00005 ABC transporter CQB05_08515 PF00664 ABC transporter transmembrane region CQB05_08520 PF03061 Thioesterase superfamily CQB05_08530 PF03401 Tripartite tricarboxylate transporter family receptor CQB05_08535 PF00378 Enoyl-CoA hydratase/isomerase CQB05_08545 PF02803 Thiolase, C-terminal domain CQB05_08545 PF00108 Thiolase, N-terminal domain CQB05_08555 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain CQB05_08555 PF00378 Enoyl-CoA hydratase/isomerase CQB05_08555 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain CQB05_08565 PF02771 Acyl-CoA dehydrogenase, N-terminal domain CQB05_08565 PF02770 Acyl-CoA dehydrogenase, middle domain CQB05_08565 PF00441 Acyl-CoA dehydrogenase, C-terminal domain CQB05_08565 PF12806 Acetyl-CoA dehydrogenase C-terminal like CQB05_08810 PF03707 Bacterial signalling protein N terminal repeat CQB05_08810 PF00990 Diguanylate cyclase, GGDEF domain CQB05_08810 PF00563 EAL domain CQB05_08815 PF00990 Diguanylate cyclase, GGDEF domain CQB05_08835 PF00005 ABC transporter CQB05_08840 PF12399 Branched-chain amino acid ATP-binding cassette transporter CQB05_08840 PF00005 ABC transporter CQB05_08850 PF02653 Branched-chain amino acid transport system / permease component CQB05_08860 PF13193 AMP-binding enzyme C-terminal domain CQB05_08860 PF00501 AMP-binding enzyme CQB05_08865 PF02696 Uncharacterized ACR, YdiU/UPF0061 family CQB05_08870 PF01641 SelR domain CQB05_08875 PF04279 Intracellular septation protein A CQB05_08905 PF01176 Translation initiation factor 1A / IF-1 CQB05_08910 PF02666 Phosphatidylserine decarboxylase CQB05_08925 PF00892 EamA-like transporter family CQB05_08940 PF01979 Amidohydrolase family CQB05_08955 PF17391 Urocanase N-terminal domain CQB05_08955 PF17392 Urocanase C-terminal domain CQB05_08955 PF01175 Urocanase Rossmann-like domain CQB05_08960 PF00221 Aromatic amino acid lyase CQB05_08965 PF00392 Bacterial regulatory proteins, gntR family CQB05_08965 PF07702 UTRA domain CQB05_08970 PF00005 ABC transporter CQB05_08975 PF00528 Binding-protein-dependent transport system inner membrane component CQB05_08985 PF08678 Rsbr N terminal CQB05_08985 PF01740 STAS domain CQB05_08990 PF01740 STAS domain CQB05_08995 PF13581 Histidine kinase-like ATPase domain CQB05_09005 PF00512 His Kinase A (phospho-acceptor) domain CQB05_09005 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CQB05_09010 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CQB05_09010 PF00512 His Kinase A (phospho-acceptor) domain CQB05_09015 PF00072 Response regulator receiver domain CQB05_09015 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CQB05_09015 PF13426 PAS domain CQB05_09045 PF00483 Nucleotidyl transferase CQB05_09050 PF00128 Alpha amylase, catalytic domain CQB05_09050 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) CQB05_09055 PF11941 Domain of unknown function (DUF3459) CQB05_09055 PF00128 Alpha amylase, catalytic domain CQB05_09060 PF00128 Alpha amylase, catalytic domain CQB05_09065 PF00534 Glycosyl transferases group 1 CQB05_09065 PF08323 Starch synthase catalytic domain CQB05_09080 PF00575 S1 RNA binding domain CQB05_09080 PF00773 RNB domain CQB05_09080 PF08206 Ribonuclease B OB domain CQB05_09080 PF08461 Ribonuclease R winged-helix domain CQB05_09080 PF17876 Cold shock domain CQB05_09105 PF01464 Transglycosylase SLT domain CQB05_09105 PF11873 Membrane-bound lytic murein transglycosylase C, N-terminal domain CQB05_09110 PF00464 Serine hydroxymethyltransferase CQB05_09115 PF03477 ATP cone domain CQB05_09125 PF01264 Chorismate synthase CQB05_09130 PF00005 ABC transporter CQB05_09130 PF00571 CBS domain CQB05_09135 PF01053 Cys/Met metabolism PLP-dependent enzyme CQB05_09145 PF13419 Haloacid dehalogenase-like hydrolase CQB05_09150 PF00762 Ferrochelatase CQB05_09155 PF16736 Single Cache-like CQB05_09155 PF00512 His Kinase A (phospho-acceptor) domain CQB05_09155 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CQB05_09155 PF00989 PAS fold CQB05_09160 PF00486 Transcriptional regulatory protein, C terminal CQB05_09160 PF00072 Response regulator receiver domain CQB05_09175 PF10605 3HB-oligomer hydrolase (3HBOH) CQB05_09185 PF00593 TonB dependent receptor CQB05_09185 PF07715 TonB-dependent Receptor Plug Domain CQB05_09195 PF01970 Tripartite tricarboxylate transporter TctA family CQB05_09205 PF03401 Tripartite tricarboxylate transporter family receptor CQB05_09210 PF00486 Transcriptional regulatory protein, C terminal CQB05_09210 PF00072 Response regulator receiver domain CQB05_09215 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CQB05_09215 PF00512 His Kinase A (phospho-acceptor) domain CQB05_09215 PF08521 Two-component sensor kinase N-terminal CQB05_09220 PF02417 Chromate transporter CQB05_09230 PF00248 Aldo/keto reductase family CQB05_09235 PF02146 Sir2 family CQB05_09240 PF08032 RNA 2'-O ribose methyltransferase substrate binding CQB05_09240 PF00588 SpoU rRNA Methylase family CQB05_09245 PF00005 ABC transporter CQB05_09250 PF13472 GDSL-like Lipase/Acylhydrolase family CQB05_09260 PF01053 Cys/Met metabolism PLP-dependent enzyme CQB05_09270 PF00916 Sulfate permease family CQB05_09270 PF01740 STAS domain CQB05_09280 PF10609 NUBPL iron-transfer P-loop NTPase CQB05_09290 PF02678 Pirin CQB05_09290 PF05726 Pirin C-terminal cupin domain CQB05_09295 PF03358 NADPH-dependent FMN reductase CQB05_09300 PF17954 Quercetinase C-terminal cupin domain CQB05_09300 PF02678 Pirin CQB05_09305 PF03466 LysR substrate binding domain CQB05_09305 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CQB05_09315 PF00749 tRNA synthetases class I (E and Q), catalytic domain CQB05_09320 PF02390 Putative methyltransferase CQB05_09330 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain CQB05_09330 PF02272 DHHA1 domain CQB05_09330 PF01411 tRNA synthetases class II (A) CQB05_09345 PF00034 Cytochrome c CQB05_09350 PF03466 LysR substrate binding domain CQB05_09350 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CQB05_09355 PF03459 TOBE domain CQB05_09360 PF00005 ABC transporter CQB05_09365 PF00528 Binding-protein-dependent transport system inner membrane component CQB05_09375 PF00296 Luciferase-like monooxygenase CQB05_09385 PF09084 NMT1/THI5 like CQB05_09395 PF04362 Bacterial Fe(2+) trafficking CQB05_09400 PF01266 FAD dependent oxidoreductase CQB05_09400 PF05430 S-adenosyl-L-methionine-dependent methyltransferase CQB05_09415 PF01925 Sulfite exporter TauE/SafE CQB05_09420 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain CQB05_09420 PF01077 Nitrite and sulphite reductase 4Fe-4S domain CQB05_09430 PF01507 Phosphoadenosine phosphosulfate reductase family CQB05_09435 PF00009 Elongation factor Tu GTP binding domain CQB05_09440 PF11953 Domain of unknown function (DUF3470) CQB05_09440 PF00037 4Fe-4S binding domain CQB05_09445 PF07992 Pyridine nucleotide-disulphide oxidoreductase CQB05_09485 PF00069 Protein kinase domain CQB05_09490 PF08543 Phosphomethylpyrimidine kinase CQB05_09495 PF01266 FAD dependent oxidoreductase CQB05_09505 PF05690 Thiazole biosynthesis protein ThiG CQB05_09510 PF02581 Thiamine monophosphate synthase CQB05_09520 PF18321 3-hydroxybutyryl-CoA dehydrogenase reduced Rossmann-fold domain CQB05_09520 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain CQB05_09520 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain CQB05_09525 PF00378 Enoyl-CoA hydratase/isomerase CQB05_09530 PF00027 Cyclic nucleotide-binding domain CQB05_09530 PF13545 Crp-like helix-turn-helix domain CQB05_09540 PF00441 Acyl-CoA dehydrogenase, C-terminal domain CQB05_09540 PF02770 Acyl-CoA dehydrogenase, middle domain CQB05_09540 PF02771 Acyl-CoA dehydrogenase, N-terminal domain CQB05_09550 PF16701 Adenylate cyclase regulatory domain CQB05_09550 PF00211 Adenylate and Guanylate cyclase catalytic domain CQB05_09555 PF17676 LD-carboxypeptidase C-terminal domain CQB05_09555 PF02016 LD-carboxypeptidase N-terminal domain CQB05_09570 PF13458 Periplasmic binding protein CQB05_09580 PF12392 Collagenase CQB05_09580 PF01136 Peptidase family U32 CQB05_09590 PF07676 WD40-like Beta Propeller Repeat CQB05_09590 PF00326 Prolyl oligopeptidase family CQB05_09595 PF01053 Cys/Met metabolism PLP-dependent enzyme CQB05_09600 PF03781 Sulfatase-modifying factor enzyme 1 CQB05_09600 PF12867 DinB superfamily CQB05_09605 PF10017 Histidine-specific methyltransferase, SAM-dependent CQB05_09615 PF00672 HAMP domain CQB05_09615 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) CQB05_09615 PF00512 His Kinase A (phospho-acceptor) domain CQB05_09615 PF01627 Hpt domain CQB05_09615 PF00072 Response regulator receiver domain CQB05_09615 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CQB05_09620 PF03922 OmpW family CQB05_09625 PF05661 Protein of unknown function (DUF808) CQB05_09630 PF00563 EAL domain CQB05_09630 PF03707 Bacterial signalling protein N terminal repeat CQB05_09630 PF00990 Diguanylate cyclase, GGDEF domain CQB05_09645 PF02769 AIR synthase related protein, C-terminal domain CQB05_09645 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain CQB05_09645 PF18076 Formylglycinamide ribonucleotide amidotransferase N-terminal CQB05_09650 PF00557 Metallopeptidase family M24 CQB05_09655 PF08335 GlnD PII-uridylyltransferase CQB05_09655 PF01909 Nucleotidyltransferase domain CQB05_09655 PF01966 HD domain CQB05_09660 PF01327 Polypeptide deformylase CQB05_09675 PF03588 Leucyl/phenylalanyl-tRNA protein transferase CQB05_09680 PF04377 Arginine-tRNA-protein transferase, C terminus CQB05_09680 PF04376 Arginine-tRNA-protein transferase, N terminus CQB05_09685 PF01614 Bacterial transcriptional regulator CQB05_09685 PF09339 IclR helix-turn-helix domain CQB05_09695 PF00682 HMGL-like CQB05_09695 PF08502 LeuA allosteric (dimerisation) domain CQB05_09700 PF01066 CDP-alcohol phosphatidyltransferase CQB05_09705 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain CQB05_09705 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain CQB05_09710 PF10369 Small subunit of acetolactate synthase CQB05_09715 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain CQB05_09715 PF00205 Thiamine pyrophosphate enzyme, central domain CQB05_09715 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain CQB05_09720 PF08281 Sigma-70, region 4 CQB05_09720 PF04542 Sigma-70 region 2 CQB05_09740 PF01219 Prokaryotic diacylglycerol kinase CQB05_09750 PF00543 Nitrogen regulatory protein P-II CQB05_09755 PF00795 Carbon-nitrogen hydrolase CQB05_09755 PF02540 NAD synthase CQB05_09765 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CQB05_09765 PF03466 LysR substrate binding domain CQB05_09775 PF03401 Tripartite tricarboxylate transporter family receptor CQB05_09780 PF01584 CheW-like domain CQB05_09785 PF01144 Coenzyme A transferase CQB05_09790 PF01144 Coenzyme A transferase CQB05_09805 PF07992 Pyridine nucleotide-disulphide oxidoreductase CQB05_09815 PF00141 Peroxidase CQB05_09840 PF06628 Catalase-related immune-responsive CQB05_09840 PF00199 Catalase CQB05_09855 PF08212 Lipocalin-like domain CQB05_09865 PF02653 Branched-chain amino acid transport system / permease component CQB05_09870 PF00005 ABC transporter CQB05_09875 PF01037 Lrp/AsnC ligand binding domain CQB05_09880 PF01571 Aminomethyltransferase folate-binding domain CQB05_09880 PF08669 Glycine cleavage T-protein C-terminal barrel domain CQB05_09885 PF01597 Glycine cleavage H-protein CQB05_09895 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase CQB05_09895 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase CQB05_09900 PF13188 PAS domain CQB05_09900 PF00072 Response regulator receiver domain CQB05_09900 PF08448 PAS fold CQB05_09900 PF00512 His Kinase A (phospho-acceptor) domain CQB05_09900 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CQB05_09905 PF00849 RNA pseudouridylate synthase CQB05_09910 PF00106 short chain dehydrogenase CQB05_09915 PF03401 Tripartite tricarboxylate transporter family receptor CQB05_09925 PF00582 Universal stress protein family CQB05_09935 PF07238 PilZ domain CQB05_09940 PF00501 AMP-binding enzyme CQB05_09940 PF13193 AMP-binding enzyme C-terminal domain CQB05_09945 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain CQB05_09945 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain CQB05_09945 PF01842 ACT domain CQB05_09950 PF13458 Periplasmic binding protein CQB05_09965 PF00883 Cytosol aminopeptidase family, catalytic domain CQB05_09965 PF02789 Cytosol aminopeptidase family, N-terminal domain CQB05_09985 PF03466 LysR substrate binding domain CQB05_09985 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CQB05_09990 PF00155 Aminotransferase class I and II CQB05_10005 PF00005 ABC transporter CQB05_10010 PF00005 ABC transporter CQB05_10010 PF12399 Branched-chain amino acid ATP-binding cassette transporter CQB05_10020 PF02653 Branched-chain amino acid transport system / permease component CQB05_10025 PF13458 Periplasmic binding protein CQB05_10030 PF13193 AMP-binding enzyme C-terminal domain CQB05_10030 PF00501 AMP-binding enzyme CQB05_10035 PF02771 Acyl-CoA dehydrogenase, N-terminal domain CQB05_10035 PF02770 Acyl-CoA dehydrogenase, middle domain CQB05_10035 PF00441 Acyl-CoA dehydrogenase, C-terminal domain CQB05_10050 PF00106 short chain dehydrogenase CQB05_10055 PF01494 FAD binding domain CQB05_10065 PF12697 Alpha/beta hydrolase family CQB05_10070 PF00512 His Kinase A (phospho-acceptor) domain CQB05_10070 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CQB05_10070 PF07689 KaiB domain CQB05_10080 PF11398 Protein of unknown function (DUF2813) CQB05_10085 PF00580 UvrD/REP helicase N-terminal domain CQB05_10085 PF13361 UvrD-like helicase C-terminal domain CQB05_10125 PF02545 Maf-like protein CQB05_10135 PF02590 Predicted SPOUT methyltransferase CQB05_10145 PF01218 Coproporphyrinogen III oxidase CQB05_10150 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain CQB05_10150 PF02843 Phosphoribosylglycinamide synthetase, C domain CQB05_10150 PF02844 Phosphoribosylglycinamide synthetase, N domain CQB05_10155 PF01709 Transcriptional regulator CQB05_10160 PF05872 Bacterial protein of unknown function (DUF853) CQB05_10185 PF01565 FAD binding domain CQB05_10185 PF02913 FAD linked oxidases, C-terminal domain CQB05_10190 PF00206 Lyase CQB05_10190 PF10397 Adenylosuccinate lyase C-terminus CQB05_10195 PF03401 Tripartite tricarboxylate transporter family receptor CQB05_10200 PF00581 Rhodanese-like domain CQB05_10205 PF03401 Tripartite tricarboxylate transporter family receptor CQB05_10210 PF01568 Molydopterin dinucleotide binding domain CQB05_10210 PF00384 Molybdopterin oxidoreductase CQB05_10215 PF00043 Glutathione S-transferase, C-terminal domain CQB05_10215 PF02798 Glutathione S-transferase, N-terminal domain CQB05_10220 PF00378 Enoyl-CoA hydratase/isomerase CQB05_10220 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain CQB05_10220 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain CQB05_10225 PF00291 Pyridoxal-phosphate dependent enzyme CQB05_10235 PF13302 Acetyltransferase (GNAT) domain CQB05_10245 PF07969 Amidohydrolase family CQB05_10280 PF01556 DnaJ C terminal domain CQB05_10280 PF00226 DnaJ domain CQB05_10280 PF00684 DnaJ central domain CQB05_10290 PF00171 Aldehyde dehydrogenase family CQB05_10295 PF00107 Zinc-binding dehydrogenase CQB05_10295 PF08240 Alcohol dehydrogenase GroES-like domain CQB05_10310 PF00158 Sigma-54 interaction domain CQB05_10310 PF02954 Bacterial regulatory protein, Fis family CQB05_10310 PF01590 GAF domain CQB05_10315 PF02146 Sir2 family CQB05_10320 PF08411 Exonuclease C-terminal CQB05_10320 PF00929 Exonuclease CQB05_10330 PF10431 C-terminal, D2-small domain, of ClpB protein CQB05_10330 PF00004 ATPase family associated with various cellular activities (AAA) CQB05_10330 PF02861 Clp amino terminal domain, pathogenicity island component CQB05_10330 PF17871 AAA lid domain CQB05_10330 PF07724 AAA domain (Cdc48 subfamily) CQB05_10335 PF02617 ATP-dependent Clp protease adaptor protein ClpS CQB05_10340 PF14579 Helix-hairpin-helix motif CQB05_10340 PF02811 PHP domain CQB05_10340 PF01336 OB-fold nucleic acid binding domain CQB05_10340 PF07733 Bacterial DNA polymerase III alpha NTPase domain CQB05_10340 PF17657 Bacterial DNA polymerase III alpha subunit finger domain CQB05_10345 PF13525 Outer membrane lipoprotein CQB05_10350 PF04851 Type III restriction enzyme, res subunit CQB05_10350 PF13307 Helicase C-terminal domain CQB05_10365 PF03969 AFG1-like ATPase CQB05_10370 PF07992 Pyridine nucleotide-disulphide oxidoreductase CQB05_10370 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain CQB05_10375 PF00364 Biotin-requiring enzyme CQB05_10375 PF02817 e3 binding domain CQB05_10375 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) CQB05_10380 PF00676 Dehydrogenase E1 component CQB05_10380 PF16078 2-oxoglutarate dehydrogenase N-terminus CQB05_10380 PF16870 2-oxoglutarate dehydrogenase C-terminal CQB05_10380 PF02779 Transketolase, pyrimidine binding domain CQB05_10385 PF01594 AI-2E family transporter CQB05_10390 PF00563 EAL domain CQB05_10390 PF08448 PAS fold CQB05_10390 PF08447 PAS fold CQB05_10390 PF05231 MASE1 CQB05_10390 PF00990 Diguanylate cyclase, GGDEF domain CQB05_10390 PF13426 PAS domain CQB05_10395 PF08352 Oligopeptide/dipeptide transporter, C-terminal region CQB05_10395 PF00005 ABC transporter CQB05_10400 PF00528 Binding-protein-dependent transport system inner membrane component CQB05_10400 PF12911 N-terminal TM domain of oligopeptide transport permease C CQB05_10405 PF00528 Binding-protein-dependent transport system inner membrane component CQB05_10410 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle CQB05_10420 PF02469 Fasciclin domain CQB05_10425 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain CQB05_10425 PF01276 Orn/Lys/Arg decarboxylase, major domain CQB05_10425 PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain CQB05_10435 PF01145 SPFH domain / Band 7 family CQB05_10485 PF03401 Tripartite tricarboxylate transporter family receptor CQB05_10490 PF01970 Tripartite tricarboxylate transporter TctA family CQB05_10520 PF13419 Haloacid dehalogenase-like hydrolase CQB05_10530 PF00691 OmpA family CQB05_10535 PF00521 DNA gyrase/topoisomerase IV, subunit A CQB05_10535 PF03989 DNA gyrase C-terminal domain, beta-propeller CQB05_10540 PF00266 Aminotransferase class-V CQB05_10545 PF00800 Prephenate dehydratase CQB05_10545 PF01817 Chorismate mutase type II CQB05_10545 PF01842 ACT domain CQB05_10550 PF02153 Prephenate dehydrogenase CQB05_10555 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) CQB05_10560 PF00575 S1 RNA binding domain CQB05_10565 PF00216 Bacterial DNA-binding protein CQB05_10575 PF18073 Rubredoxin metal binding domain CQB05_10580 PF13244 Domain of unknown function (DUF4040) CQB05_10580 PF04039 Domain related to MnhB subunit of Na+/H+ antiporter CQB05_10580 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus CQB05_10580 PF00361 Proton-conducting membrane transporter CQB05_10585 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L CQB05_10590 PF00361 Proton-conducting membrane transporter CQB05_10600 PF04066 Multiple resistance and pH regulation protein F (MrpF / PhaF) CQB05_10610 PF01968 Hydantoinase/oxoprolinase CQB05_10610 PF05378 Hydantoinase/oxoprolinase N-terminal region CQB05_10630 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component CQB05_10635 PF02537 CrcB-like protein, Camphor Resistance (CrcB) CQB05_10655 PF02646 RmuC family CQB05_10660 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain CQB05_10660 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain CQB05_10665 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family CQB05_10665 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain CQB05_10680 PF09361 Phasin protein CQB05_10695 PF01618 MotA/TolQ/ExbB proton channel family CQB05_10700 PF02472 Biopolymer transport protein ExbD/TolR CQB05_10710 PF03928 Haem-degrading CQB05_10715 PF01027 Inhibitor of apoptosis-promoting Bax1 CQB05_10725 PF05958 tRNA (Uracil-5-)-methyltransferase CQB05_10735 PF01037 Lrp/AsnC ligand binding domain CQB05_10740 PF00171 Aldehyde dehydrogenase family CQB05_10740 PF18327 Proline utilization A proline dehydrogenase N-terminal domain CQB05_10740 PF14850 DNA-binding domain of Proline dehydrogenase CQB05_10740 PF01619 Proline dehydrogenase CQB05_10750 PF01032 FecCD transport family CQB05_10760 PF00005 ABC transporter CQB05_10765 PF07715 TonB-dependent Receptor Plug Domain CQB05_10765 PF00593 TonB dependent receptor CQB05_10775 PF00043 Glutathione S-transferase, C-terminal domain CQB05_10775 PF02798 Glutathione S-transferase, N-terminal domain CQB05_10780 PF03401 Tripartite tricarboxylate transporter family receptor CQB05_10800 PF00293 NUDIX domain CQB05_10805 PF00313 'Cold-shock' DNA-binding domain CQB05_10820 PF07992 Pyridine nucleotide-disulphide oxidoreductase CQB05_10825 PF13649 Methyltransferase domain CQB05_10855 PF03527 RHS protein CQB05_10855 PF05593 RHS Repeat CQB05_10865 PF04717 Type VI secretion system, phage-baseplate injector CQB05_10890 PF03466 LysR substrate binding domain CQB05_10890 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CQB05_10915 PF02463 RecF/RecN/SMC N terminal domain CQB05_10920 PF01420 Type I restriction modification DNA specificity domain CQB05_10925 PF02384 N-6 DNA Methylase CQB05_10925 PF12161 HsdM N-terminal domain CQB05_10965 PF00589 Phage integrase family CQB05_10965 PF13356 Arm DNA-binding domain CQB05_10970 PF00117 Glutamine amidotransferase class-I CQB05_10970 PF02540 NAD synthase CQB05_10970 PF00958 GMP synthase C terminal domain CQB05_10985 PF00571 CBS domain CQB05_10985 PF00478 IMP dehydrogenase / GMP reductase domain CQB05_10995 PF03658 RnfH family Ubiquitin CQB05_11000 PF03364 Polyketide cyclase / dehydrase and lipid transport CQB05_11005 PF01668 SmpB protein CQB05_11015 PF08281 Sigma-70, region 4 CQB05_11015 PF04542 Sigma-70 region 2 CQB05_11025 PF00378 Enoyl-CoA hydratase/isomerase CQB05_11040 PF01509 TruB family pseudouridylate synthase (N terminal domain) CQB05_11040 PF16198 tRNA pseudouridylate synthase B C-terminal domain CQB05_11045 PF02033 Ribosome-binding factor A CQB05_11050 PF11987 Translation-initiation factor 2 CQB05_11050 PF08364 Bacterial translation initiation factor IF-2 associated region CQB05_11050 PF00009 Elongation factor Tu GTP binding domain CQB05_11050 PF04760 Translation initiation factor IF-2, N-terminal region CQB05_11055 PF00575 S1 RNA binding domain CQB05_11055 PF08529 NusA N-terminal domain CQB05_11055 PF13184 NusA-like KH domain CQB05_11060 PF02576 RimP N-terminal domain CQB05_11070 PF00034 Cytochrome c CQB05_11070 PF13442 Cytochrome C oxidase, cbb3-type, subunit III CQB05_11070 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase CQB05_11085 PF03401 Tripartite tricarboxylate transporter family receptor CQB05_11100 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CQB05_11100 PF03466 LysR substrate binding domain CQB05_11135 PF02423 Ornithine cyclodeaminase/mu-crystallin family CQB05_11140 PF13458 Periplasmic binding protein CQB05_11155 PF00899 ThiF family CQB05_11165 PF00691 OmpA family CQB05_11170 PF07676 WD40-like Beta Propeller Repeat CQB05_11170 PF04052 TolB amino-terminal domain CQB05_11175 PF00005 ABC transporter CQB05_11175 PF00664 ABC transporter transmembrane region CQB05_11185 PF01026 TatD related DNase CQB05_11200 PF02223 Thymidylate kinase CQB05_11205 PF02618 YceG-like family CQB05_11210 PF01571 Aminomethyltransferase folate-binding domain CQB05_11220 PF07859 alpha/beta hydrolase fold CQB05_11225 PF01557 Fumarylacetoacetate (FAA) hydrolase family CQB05_11230 PF00465 Iron-containing alcohol dehydrogenase CQB05_11245 PF17674 HHH domain CQB05_11245 PF00575 S1 RNA binding domain CQB05_11245 PF09371 Tex-like protein N-terminal domain CQB05_11245 PF16921 Tex protein YqgF-like domain CQB05_11270 PF07690 Major Facilitator Superfamily CQB05_11275 PF07690 Major Facilitator Superfamily CQB05_11315 PF00749 tRNA synthetases class I (E and Q), catalytic domain CQB05_11320 PF01053 Cys/Met metabolism PLP-dependent enzyme CQB05_11325 PF00156 Phosphoribosyl transferase domain CQB05_11330 PF02674 Colicin V production protein CQB05_11340 PF02875 Mur ligase family, glutamate ligase domain CQB05_11340 PF08245 Mur ligase middle domain CQB05_11345 PF03960 ArsC family CQB05_11355 PF06865 Pyrimidine/purine nucleoside phosphorylase CQB05_11360 PF00764 Arginosuccinate synthase CQB05_11365 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain CQB05_11365 PF01565 FAD binding domain CQB05_11370 PF04461 Protein of unknown function (DUF520) CQB05_11385 PF02660 Glycerol-3-phosphate acyltransferase CQB05_11390 PF04073 Aminoacyl-tRNA editing domain CQB05_11395 PF00248 Aldo/keto reductase family CQB05_11400 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain CQB05_11400 PF06827 Zinc finger found in FPG and IleRS CQB05_11400 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain CQB05_11415 PF02463 RecF/RecN/SMC N terminal domain CQB05_11425 PF01433 Peptidase family M1 domain CQB05_11425 PF17432 Domain of unknown function (DUF3458_C) ARM repeats CQB05_11425 PF11940 Domain of unknown function (DUF3458) Ig-like fold CQB05_11430 PF00316 Fructose-1-6-bisphosphatase, N-terminal domain CQB05_11440 PF03466 LysR substrate binding domain CQB05_11440 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CQB05_11445 PF18158 Adaptive response protein AidB N-terminal domain CQB05_11445 PF02770 Acyl-CoA dehydrogenase, middle domain CQB05_11445 PF00441 Acyl-CoA dehydrogenase, C-terminal domain CQB05_11450 PF03401 Tripartite tricarboxylate transporter family receptor CQB05_11455 PF02515 CoA-transferase family III CQB05_11460 PF08032 RNA 2'-O ribose methyltransferase substrate binding CQB05_11460 PF00588 SpoU rRNA Methylase family CQB05_11465 PF01351 Ribonuclease HII CQB05_11470 PF02684 Lipid-A-disaccharide synthetase CQB05_11475 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 CQB05_11475 PF00132 Bacterial transferase hexapeptide (six repeats) CQB05_11480 PF07977 FabA-like domain CQB05_11485 PF00132 Bacterial transferase hexapeptide (six repeats) CQB05_11485 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD CQB05_11495 PF07244 Surface antigen variable number repeat CQB05_11495 PF01103 Surface antigen CQB05_11500 PF02163 Peptidase family M50 CQB05_11500 PF17820 PDZ domain CQB05_11505 PF13288 DXP reductoisomerase C-terminal domain CQB05_11505 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain CQB05_11505 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase CQB05_11515 PF01255 Putative undecaprenyl diphosphate synthase CQB05_11520 PF01765 Ribosome recycling factor CQB05_11525 PF00696 Amino acid kinase family CQB05_11530 PF00889 Elongation factor TS CQB05_11535 PF00318 Ribosomal protein S2 CQB05_11570 PF13411 MerR HTH family regulatory protein CQB05_11575 PF00403 Heavy-metal-associated domain CQB05_11600 PF07732 Multicopper oxidase CQB05_11600 PF07731 Multicopper oxidase CQB05_11600 PF00394 Multicopper oxidase CQB05_11615 PF03466 LysR substrate binding domain CQB05_11615 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CQB05_11630 PF03576 Peptidase family S58 CQB05_11645 PF00005 ABC transporter CQB05_11645 PF12848 ABC transporter CQB05_11650 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain CQB05_11650 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain CQB05_11660 PF00271 Helicase conserved C-terminal domain CQB05_11660 PF00270 DEAD/DEAH box helicase CQB05_11670 PF00999 Sodium/hydrogen exchanger family CQB05_11670 PF02254 TrkA-N domain CQB05_11750 PF06791 Prophage tail length tape measure protein CQB05_11925 PF01381 Helix-turn-helix CQB05_11925 PF00717 Peptidase S24-like CQB05_11980 PF00145 C-5 cytosine-specific DNA methylase CQB05_12120 PF12441 CopG antitoxin of type II toxin-antitoxin system CQB05_12235 PF10668 Phage terminase small subunit CQB05_12235 PF03592 Terminase small subunit CQB05_12340 PF00145 C-5 cytosine-specific DNA methylase CQB05_12425 PF00216 Bacterial DNA-binding protein CQB05_12430 PF01066 CDP-alcohol phosphatidyltransferase CQB05_12435 PF01541 GIY-YIG catalytic domain CQB05_12435 PF08459 UvrC Helix-hairpin-helix N-terminal CQB05_12450 PF03576 Peptidase family S58 CQB05_12455 PF12911 N-terminal TM domain of oligopeptide transport permease C CQB05_12455 PF00528 Binding-protein-dependent transport system inner membrane component CQB05_12460 PF00528 Binding-protein-dependent transport system inner membrane component CQB05_12465 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle CQB05_12470 PF00005 ABC transporter CQB05_12470 PF08352 Oligopeptide/dipeptide transporter, C-terminal region CQB05_12475 PF01112 Asparaginase CQB05_12485 PF03401 Tripartite tricarboxylate transporter family receptor CQB05_12490 PF03401 Tripartite tricarboxylate transporter family receptor CQB05_12495 PF00682 HMGL-like CQB05_12500 PF02515 CoA-transferase family III CQB05_12515 PF01132 Elongation factor P (EF-P) OB domain CQB05_12515 PF08207 Elongation factor P (EF-P) KOW-like domain CQB05_12515 PF09285 Elongation factor P, C-terminal CQB05_12525 PF07690 Major Facilitator Superfamily CQB05_12530 PF00919 Uncharacterized protein family UPF0004 CQB05_12530 PF18693 TRAM domain CQB05_12530 PF04055 Radical SAM superfamily CQB05_12625 PF06791 Prophage tail length tape measure protein CQB05_12740 PF00717 Peptidase S24-like CQB05_12740 PF01381 Helix-turn-helix CQB05_12775 PF17762 HTH domain found in ParB protein CQB05_12775 PF02195 ParB-like nuclease domain CQB05_12795 PF07879 PHB/PHA accumulation regulator DNA-binding domain CQB05_12795 PF05233 PHB accumulation regulatory domain CQB05_12805 PF01965 DJ-1/PfpI family CQB05_12840 PF02824 TGS domain CQB05_12840 PF13291 ACT domain CQB05_12840 PF04607 Region found in RelA / SpoT proteins CQB05_12850 PF00106 short chain dehydrogenase CQB05_12860 PF00486 Transcriptional regulatory protein, C terminal CQB05_12860 PF00072 Response regulator receiver domain CQB05_12865 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CQB05_12865 PF00512 His Kinase A (phospho-acceptor) domain CQB05_12865 PF00672 HAMP domain CQB05_12870 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase CQB05_12870 PF02542 YgbB family CQB05_12875 PF02542 YgbB family CQB05_12875 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase CQB05_12880 PF00271 Helicase conserved C-terminal domain CQB05_12880 PF17757 UvrB interaction domain CQB05_12880 PF03461 TRCF domain CQB05_12880 PF00270 DEAD/DEAH box helicase CQB05_12880 PF02559 CarD-like/TRCF domain CQB05_12890 PF07519 Tannase and feruloyl esterase CQB05_12905 PF03180 NLPA lipoprotein CQB05_12910 PF01810 LysE type translocator CQB05_12915 PF03466 LysR substrate binding domain CQB05_12915 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CQB05_12920 PF02082 Transcriptional regulator CQB05_12925 PF01814 Hemerythrin HHE cation binding domain CQB05_12925 PF04405 Domain of Unknown function (DUF542) CQB05_12945 PF00270 DEAD/DEAH box helicase CQB05_12945 PF00271 Helicase conserved C-terminal domain CQB05_12955 PF00248 Aldo/keto reductase family CQB05_12965 PF00155 Aminotransferase class I and II CQB05_12970 PF00730 HhH-GPD superfamily base excision DNA repair protein CQB05_12970 PF00633 Helix-hairpin-helix motif CQB05_12970 PF10576 Iron-sulfur binding domain of endonuclease III CQB05_12975 PF00583 Acetyltransferase (GNAT) family CQB05_12985 PF00083 Sugar (and other) transporter CQB05_12990 PF01609 Transposase DDE domain CQB05_12990 PF05598 Transposase domain (DUF772) CQB05_13015 PF02277 Phosphoribosyltransferase CQB05_13020 PF07685 CobB/CobQ-like glutamine amidotransferase domain CQB05_13020 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain CQB05_13040 PF15457 Type III T3SS secreted effector HopW1-1/HopPmaA CQB05_13055 PF03186 CobD/Cbib protein CQB05_13060 PF00881 Nitroreductase family CQB05_13065 PF02572 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP CQB05_13065 PF12557 Cob(I)alamin adenosyltransferase N terminal CQB05_13070 PF00005 ABC transporter CQB05_13075 PF01032 FecCD transport family CQB05_13085 PF02283 Cobinamide kinase / cobinamide phosphate guanyltransferase CQB05_13090 PF07685 CobB/CobQ-like glutamine amidotransferase domain CQB05_13090 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain CQB05_13095 PF07715 TonB-dependent Receptor Plug Domain CQB05_13095 PF00593 TonB dependent receptor CQB05_13110 PF00563 EAL domain CQB05_13110 PF00990 Diguanylate cyclase, GGDEF domain CQB05_13110 PF03707 Bacterial signalling protein N terminal repeat CQB05_13115 PF00072 Response regulator receiver domain CQB05_13125 PF04055 Radical SAM superfamily CQB05_13125 PF06969 HemN C-terminal domain CQB05_13130 PF13545 Crp-like helix-turn-helix domain CQB05_13130 PF00027 Cyclic nucleotide-binding domain CQB05_13145 PF13746 4Fe-4S dicluster domain CQB05_13145 PF11614 IG-like fold at C-terminal of FixG, putative oxidoreductase CQB05_13145 PF12801 4Fe-4S binding domain CQB05_13150 PF13442 Cytochrome C oxidase, cbb3-type, subunit III CQB05_13150 PF14715 N-terminal domain of cytochrome oxidase-cbb3, FixP CQB05_13165 PF00115 Cytochrome C and Quinol oxidase polypeptide I CQB05_13175 PF00403 Heavy-metal-associated domain CQB05_13185 PF00582 Universal stress protein family CQB05_13195 PF00291 Pyridoxal-phosphate dependent enzyme CQB05_13200 PF00501 AMP-binding enzyme CQB05_13200 PF13193 AMP-binding enzyme C-terminal domain CQB05_13205 PF00378 Enoyl-CoA hydratase/isomerase CQB05_13210 PF03401 Tripartite tricarboxylate transporter family receptor CQB05_13225 PF00392 Bacterial regulatory proteins, gntR family CQB05_13225 PF07729 FCD domain CQB05_13230 PF01790 Prolipoprotein diacylglyceryl transferase CQB05_13235 PF13018 Extended Signal Peptide of Type V secretion system CQB05_13235 PF05860 haemagglutination activity domain CQB05_13235 PF03543 Yersinia/Haemophilus virulence surface antigen CQB05_13235 PF02661 Fic/DOC family CQB05_13235 PF13332 Hemagglutinin repeat CQB05_13240 PF00210 Ferritin-like domain CQB05_13245 PF00920 Dehydratase family CQB05_13255 PF00034 Cytochrome c CQB05_13275 PF13193 AMP-binding enzyme C-terminal domain CQB05_13275 PF16177 Acetyl-coenzyme A synthetase N-terminus CQB05_13275 PF00501 AMP-binding enzyme CQB05_13280 PF03350 Uncharacterized protein family, UPF0114 CQB05_13285 PF00571 CBS domain CQB05_13285 PF00005 ABC transporter CQB05_13290 PF00528 Binding-protein-dependent transport system inner membrane component CQB05_13295 PF04069 Substrate binding domain of ABC-type glycine betaine transport system CQB05_13300 PF00512 His Kinase A (phospho-acceptor) domain CQB05_13300 PF00672 HAMP domain CQB05_13300 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CQB05_13305 PF00486 Transcriptional regulatory protein, C terminal CQB05_13305 PF00072 Response regulator receiver domain CQB05_13315 PF10415 Fumarase C C-terminus CQB05_13315 PF00206 Lyase CQB05_13320 PF00990 Diguanylate cyclase, GGDEF domain CQB05_13320 PF00563 EAL domain CQB05_13320 PF03707 Bacterial signalling protein N terminal repeat CQB05_13330 PF01177 Asp/Glu/Hydantoin racemase CQB05_13340 PF00941 FAD binding domain in molybdopterin dehydrogenase CQB05_13340 PF03450 CO dehydrogenase flavoprotein C-terminal domain CQB05_13345 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain CQB05_13345 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase CQB05_13350 PF01863 Protein of unknown function DUF45 CQB05_13365 PF07724 AAA domain (Cdc48 subfamily) CQB05_13365 PF00004 ATPase family associated with various cellular activities (AAA) CQB05_13365 PF10431 C-terminal, D2-small domain, of ClpB protein CQB05_13365 PF17871 AAA lid domain CQB05_13415 PF13488 Glycine zipper CQB05_13415 PF00691 OmpA family CQB05_13445 PF03793 PASTA domain CQB05_13445 PF00069 Protein kinase domain CQB05_13465 PF13533 Biotin-lipoyl like CQB05_13470 PF00873 AcrB/AcrD/AcrF family CQB05_13480 PF05697 Bacterial trigger factor protein (TF) CQB05_13480 PF05698 Bacterial trigger factor protein (TF) C-terminus CQB05_13480 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase CQB05_13485 PF00574 Clp protease CQB05_13490 PF06689 ClpX C4-type zinc finger CQB05_13490 PF07724 AAA domain (Cdc48 subfamily) CQB05_13490 PF10431 C-terminal, D2-small domain, of ClpB protein CQB05_13495 PF00004 ATPase family associated with various cellular activities (AAA) CQB05_13495 PF05362 Lon protease (S16) C-terminal proteolytic domain CQB05_13495 PF02190 ATP-dependent protease La (LON) substrate-binding domain CQB05_13520 PF01593 Flavin containing amine oxidoreductase CQB05_13535 PF01565 FAD binding domain CQB05_13535 PF02913 FAD linked oxidases, C-terminal domain CQB05_13545 PF00303 Thymidylate synthase CQB05_13555 PF00186 Dihydrofolate reductase CQB05_13560 PF03372 Endonuclease/Exonuclease/phosphatase family CQB05_13570 PF00158 Sigma-54 interaction domain CQB05_13570 PF00072 Response regulator receiver domain CQB05_13570 PF02954 Bacterial regulatory protein, Fis family CQB05_13615 PF01479 S4 domain CQB05_13615 PF00849 RNA pseudouridylate synthase CQB05_13645 PF00156 Phosphoribosyl transferase domain CQB05_13650 PF00709 Adenylosuccinate synthetase CQB05_13655 PF13393 Histidyl-tRNA synthetase CQB05_13660 PF01145 SPFH domain / Band 7 family CQB05_13665 PF12221 Bacterial membrane protein N terminal CQB05_13665 PF01145 SPFH domain / Band 7 family CQB05_13670 PF16360 GTP-binding GTPase Middle Region CQB05_13670 PF13167 GTP-binding GTPase N-terminal CQB05_13670 PF01926 50S ribosome-binding GTPase CQB05_13675 PF17209 Hfq protein CQB05_13680 PF01926 50S ribosome-binding GTPase CQB05_13680 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal CQB05_13685 PF13360 PQQ-like domain CQB05_13695 PF13393 Histidyl-tRNA synthetase CQB05_13695 PF03129 Anticodon binding domain CQB05_13700 PF04551 GcpE protein CQB05_13715 PF04055 Radical SAM superfamily CQB05_13720 PF00334 Nucleoside diphosphate kinase CQB05_13725 PF00849 RNA pseudouridylate synthase CQB05_13725 PF01479 S4 domain CQB05_13730 PF04079 Segregation and condensation complex subunit ScpB CQB05_13740 PF01476 LysM domain CQB05_13740 PF01551 Peptidase family M23 CQB05_13750 PF01975 Survival protein SurE CQB05_13755 PF02801 Beta-ketoacyl synthase, C-terminal domain CQB05_13755 PF08659 KR domain CQB05_13755 PF00550 Phosphopantetheine attachment site CQB05_13755 PF00107 Zinc-binding dehydrogenase CQB05_13755 PF00109 Beta-ketoacyl synthase, N-terminal domain CQB05_13755 PF16197 Ketoacyl-synthetase C-terminal extension CQB05_13755 PF00698 Acyl transferase domain CQB05_13755 PF08240 Alcohol dehydrogenase GroES-like domain CQB05_13755 PF14765 Polyketide synthase dehydratase CQB05_13760 PF00072 Response regulator receiver domain CQB05_13760 PF00990 Diguanylate cyclase, GGDEF domain CQB05_13765 PF16655 PhoD-like phosphatase, N-terminal domain CQB05_13765 PF09423 PhoD-like phosphatase CQB05_13775 PF03480 Bacterial extracellular solute-binding protein, family 7 CQB05_13780 PF00563 EAL domain CQB05_13780 PF13188 PAS domain CQB05_13780 PF03707 Bacterial signalling protein N terminal repeat CQB05_13780 PF00990 Diguanylate cyclase, GGDEF domain CQB05_13785 PF08278 DNA primase DnaG DnaB-binding CQB05_13785 PF13662 Toprim domain CQB05_13785 PF08275 DNA primase catalytic core, N-terminal domain CQB05_13785 PF01807 CHC2 zinc finger CQB05_13785 PF10410 DnaB-helicase binding domain of primase CQB05_13790 PF04546 Sigma-70, non-essential region CQB05_13790 PF03979 Sigma-70 factor, region 1.1 CQB05_13790 PF00140 Sigma-70 factor, region 1.2 CQB05_13790 PF04539 Sigma-70 region 3 CQB05_13790 PF04545 Sigma-70, region 4 CQB05_13790 PF04542 Sigma-70 region 2 CQB05_13795 PF02203 Tar ligand binding domain homologue CQB05_13795 PF00672 HAMP domain CQB05_13795 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CQB05_13835 PF13378 Enolase C-terminal domain-like CQB05_13845 PF03401 Tripartite tricarboxylate transporter family receptor CQB05_13855 PF00701 Dihydrodipicolinate synthetase family CQB05_13860 PF03466 LysR substrate binding domain CQB05_13860 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CQB05_13865 PF06903 VirK protein CQB05_13870 PF00892 EamA-like transporter family CQB05_13875 PF02515 CoA-transferase family III CQB05_13885 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase CQB05_13910 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain CQB05_13910 PF02896 PEP-utilising enzyme, TIM barrel domain CQB05_13910 PF00391 PEP-utilising enzyme, mobile domain CQB05_13915 PF03618 Kinase/pyrophosphorylase CQB05_13935 PF04185 Phosphoesterase family CQB05_13935 PF05506 Domain of unknown function (DUF756) CQB05_13940 PF07992 Pyridine nucleotide-disulphide oxidoreductase CQB05_13940 PF13192 Thioredoxin domain CQB05_13945 PF00578 AhpC/TSA family CQB05_13945 PF10417 C-terminal domain of 1-Cys peroxiredoxin CQB05_13950 PF00210 Ferritin-like domain CQB05_13985 PF07715 TonB-dependent Receptor Plug Domain CQB05_13985 PF00593 TonB dependent receptor CQB05_13995 PF00171 Aldehyde dehydrogenase family CQB05_14000 PF02321 Outer membrane efflux protein CQB05_14005 PF00873 AcrB/AcrD/AcrF family CQB05_14010 PF13533 Biotin-lipoyl like CQB05_14015 PF07859 alpha/beta hydrolase fold CQB05_14020 PF03466 LysR substrate binding domain CQB05_14020 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CQB05_14025 PF09905 DNA-binding protein VF530 CQB05_14035 PF05221 S-adenosyl-L-homocysteine hydrolase CQB05_14035 PF00670 S-adenosyl-L-homocysteine hydrolase, NAD binding domain CQB05_14055 PF14403 Circularly permuted ATP-grasp type 2 CQB05_14060 PF03772 Competence protein CQB05_14060 PF00753 Metallo-beta-lactamase superfamily CQB05_14095 PF08543 Phosphomethylpyrimidine kinase CQB05_14100 PF02203 Tar ligand binding domain homologue CQB05_14100 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CQB05_14100 PF00672 HAMP domain CQB05_14105 PF00672 HAMP domain CQB05_14105 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CQB05_14105 PF02203 Tar ligand binding domain homologue CQB05_14110 PF00521 DNA gyrase/topoisomerase IV, subunit A CQB05_14115 PF01464 Transglycosylase SLT domain CQB05_14120 PF00204 DNA gyrase B CQB05_14120 PF01751 Toprim domain CQB05_14120 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CQB05_14120 PF00986 DNA gyrase B subunit, carboxyl terminus CQB05_14135 PF00701 Dihydrodipicolinate synthetase family CQB05_14140 PF06804 NlpB/DapX lipoprotein CQB05_14145 PF00753 Metallo-beta-lactamase superfamily CQB05_14160 PF08007 Cupin superfamily protein CQB05_14165 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase CQB05_14175 PF00692 dUTPase CQB05_14180 PF04127 DNA / pantothenate metabolism flavoprotein CQB05_14180 PF02441 Flavoprotein CQB05_14185 PF06418 CTP synthase N-terminus CQB05_14185 PF00117 Glutamine amidotransferase class-I CQB05_14190 PF00793 DAHP synthetase I family CQB05_14210 PF00113 Enolase, C-terminal TIM barrel domain CQB05_14210 PF03952 Enolase, N-terminal domain CQB05_14215 PF04977 Septum formation initiator CQB05_14225 PF01430 Hsp33 protein CQB05_14230 PF00132 Bacterial transferase hexapeptide (six repeats) CQB05_14235 PF04305 Protein of unknown function (DUF455) CQB05_14240 PF08668 HDOD domain CQB05_14240 PF00563 EAL domain CQB05_14245 PF00563 EAL domain CQB05_14245 PF08668 HDOD domain CQB05_14250 PF03401 Tripartite tricarboxylate transporter family receptor CQB05_14255 PF00589 Phage integrase family CQB05_14255 PF02899 Phage integrase, N-terminal SAM-like domain CQB05_14260 PF03401 Tripartite tricarboxylate transporter family receptor CQB05_14270 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain CQB05_14270 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain CQB05_14275 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CQB05_14275 PF03466 LysR substrate binding domain CQB05_14285 PF08331 Domain of unknown function (DUF1730) CQB05_14290 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE CQB05_14295 PF11741 AMIN domain CQB05_14295 PF01520 N-acetylmuramoyl-L-alanine amidase CQB05_14310 PF00561 alpha/beta hydrolase fold CQB05_14315 PF09335 SNARE associated Golgi protein CQB05_14330 PF03009 Glycerophosphoryl diester phosphodiesterase family CQB05_14335 PF12146 Serine aminopeptidase, S33 CQB05_14340 PF01638 HxlR-like helix-turn-helix CQB05_14345 PF05368 NmrA-like family CQB05_14355 PF00005 ABC transporter CQB05_14360 PF00011 Hsp20/alpha crystallin family CQB05_14380 PF00535 Glycosyl transferase family 2 CQB05_14380 PF13181 Tetratricopeptide repeat CQB05_14400 PF02653 Branched-chain amino acid transport system / permease component CQB05_14415 PF00005 ABC transporter CQB05_14425 PF00005 ABC transporter CQB05_14425 PF00664 ABC transporter transmembrane region CQB05_14445 PF00361 Proton-conducting membrane transporter CQB05_14445 PF01059 NADH-ubiquinone oxidoreductase chain 4, amino terminus CQB05_14450 PF00361 Proton-conducting membrane transporter CQB05_14450 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus CQB05_14455 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L CQB05_14460 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 CQB05_14465 PF12838 4Fe-4S dicluster domain CQB05_14470 PF00146 NADH dehydrogenase CQB05_14475 PF09326 NADH-ubiquinone oxidoreductase subunit G, C-terminal CQB05_14475 PF00384 Molybdopterin oxidoreductase CQB05_14475 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region CQB05_14480 PF10531 SLBB domain CQB05_14480 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region CQB05_14480 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit CQB05_14490 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit CQB05_14495 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit CQB05_14500 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit CQB05_14505 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 CQB05_14515 PF03840 Preprotein translocase SecG subunit CQB05_14520 PF00121 Triosephosphate isomerase CQB05_14525 PF00698 Acyl transferase domain CQB05_14525 PF08659 KR domain CQB05_14525 PF08240 Alcohol dehydrogenase GroES-like domain CQB05_14525 PF16197 Ketoacyl-synthetase C-terminal extension CQB05_14525 PF02801 Beta-ketoacyl synthase, C-terminal domain CQB05_14525 PF00109 Beta-ketoacyl synthase, N-terminal domain CQB05_14525 PF14765 Polyketide synthase dehydratase CQB05_14525 PF00550 Phosphopantetheine attachment site CQB05_14530 PF00575 S1 RNA binding domain CQB05_14530 PF00013 KH domain CQB05_14530 PF03725 3' exoribonuclease family, domain 2 CQB05_14530 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain CQB05_14530 PF01138 3' exoribonuclease family, domain 1 CQB05_14535 PF00312 Ribosomal protein S15 CQB05_14555 PF01207 Dihydrouridine synthase (Dus) CQB05_14565 PF05175 Methyltransferase small domain CQB05_14575 PF00171 Aldehyde dehydrogenase family CQB05_14585 PF00004 ATPase family associated with various cellular activities (AAA) CQB05_14585 PF02861 Clp amino terminal domain, pathogenicity island component CQB05_14585 PF10431 C-terminal, D2-small domain, of ClpB protein CQB05_14585 PF07724 AAA domain (Cdc48 subfamily) CQB05_14585 PF17871 AAA lid domain CQB05_14590 PF02391 MoaE protein CQB05_14615 PF00701 Dihydrodipicolinate synthetase family CQB05_14620 PF02597 ThiS family CQB05_14625 PF00994 Probable molybdopterin binding domain CQB05_14625 PF03454 MoeA C-terminal region (domain IV) CQB05_14625 PF03453 MoeA N-terminal region (domain I and II) CQB05_14630 PF03205 Molybdopterin guanine dinucleotide synthesis protein B CQB05_14635 PF14821 Threonine synthase N terminus CQB05_14635 PF00291 Pyridoxal-phosphate dependent enzyme CQB05_14640 PF01842 ACT domain CQB05_14640 PF00742 Homoserine dehydrogenase CQB05_14640 PF03447 Homoserine dehydrogenase, NAD binding domain CQB05_14645 PF00155 Aminotransferase class I and II CQB05_14655 PF00578 AhpC/TSA family CQB05_14660 PF13638 PIN domain CQB05_14660 PF02562 PhoH-like protein CQB05_14670 PF00772 DnaB-like helicase N terminal domain CQB05_14670 PF03796 DnaB-like helicase C terminal domain CQB05_14675 PF01281 Ribosomal protein L9, N-terminal domain CQB05_14675 PF03948 Ribosomal protein L9, C-terminal domain CQB05_14680 PF01084 Ribosomal protein S18 CQB05_14690 PF01250 Ribosomal protein S6 CQB05_14700 PF00012 Hsp70 protein CQB05_14705 PF00684 DnaJ central domain CQB05_14705 PF01556 DnaJ C terminal domain CQB05_14705 PF00226 DnaJ domain CQB05_14715 PF00330 Aconitase family (aconitate hydratase) CQB05_14725 PF00694 Aconitase C-terminal domain CQB05_14730 PF00180 Isocitrate/isopropylmalate dehydrogenase CQB05_14740 PF02774 Semialdehyde dehydrogenase, dimerisation domain CQB05_14740 PF01118 Semialdehyde dehydrogenase, NAD binding domain CQB05_14750 PF01416 tRNA pseudouridine synthase CQB05_14755 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase CQB05_14760 PF00291 Pyridoxal-phosphate dependent enzyme CQB05_14765 PF00290 Tryptophan synthase alpha chain CQB05_14770 PF17848 Acetyl-coA carboxylase zinc finger domain CQB05_14770 PF01039 Carboxyl transferase domain CQB05_14775 PF02325 YGGT family CQB05_14790 PF02397 Bacterial sugar transferase CQB05_14815 PF01336 OB-fold nucleic acid binding domain CQB05_14815 PF00152 tRNA synthetases class II (D, K and N) CQB05_14830 PF11737 Protein of unknown function (DUF3300) CQB05_14845 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ CQB05_14850 PF02565 Recombination protein O C terminal CQB05_14850 PF11967 Recombination protein O N terminal CQB05_14855 PF01926 50S ribosome-binding GTPase CQB05_14855 PF07650 KH domain CQB05_14860 PF14622 Ribonuclease-III-like CQB05_14860 PF00035 Double-stranded RNA binding motif CQB05_14870 PF10502 Signal peptidase, peptidase S26 CQB05_14880 PF13180 PDZ domain CQB05_14895 PF08281 Sigma-70, region 4 CQB05_14895 PF04542 Sigma-70 region 2 CQB05_14905 PF02801 Beta-ketoacyl synthase, C-terminal domain CQB05_14905 PF00109 Beta-ketoacyl synthase, N-terminal domain CQB05_14910 PF00550 Phosphopantetheine attachment site CQB05_14920 PF00698 Acyl transferase domain CQB05_14925 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III CQB05_14925 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal CQB05_14930 PF02504 Fatty acid synthesis protein CQB05_14935 PF01783 Ribosomal L32p protein family CQB05_14940 PF02620 Large ribosomal RNA subunit accumulation protein YceD CQB05_14945 PF02545 Maf-like protein CQB05_14950 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases CQB05_14955 PF01343 Peptidase family S49 CQB05_14955 PF06965 Na+/H+ antiporter 1 CQB05_14970 PF01479 S4 domain CQB05_14970 PF00849 RNA pseudouridylate synthase CQB05_14980 PF00575 S1 RNA binding domain CQB05_14980 PF12111 Polyribonucleotide phosphorylase C terminal CQB05_14980 PF10150 Ribonuclease E/G family CQB05_14985 PF03883 Peroxide stress protein YaaA CQB05_14995 PF14489 QueF-like protein CQB05_14995 PF14819 Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term CQB05_15000 PF13369 Transglutaminase-like superfamily CQB05_15005 PF03023 Lipid II flippase MurJ CQB05_15010 PF01649 Ribosomal protein S20 CQB05_15015 PF06039 Malate:quinone oxidoreductase (Mqo) CQB05_15025 PF00202 Aminotransferase class-III CQB05_15030 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain CQB05_15030 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain CQB05_15045 PF07664 Ferrous iron transport protein B C terminus CQB05_15045 PF07670 Nucleoside recognition CQB05_15045 PF02421 Ferrous iron transport protein B CQB05_15055 PF03692 Putative zinc- or iron-chelating domain CQB05_15060 PF01037 Lrp/AsnC ligand binding domain CQB05_15065 PF04199 Putative cyclase CQB05_15070 PF00266 Aminotransferase class-V CQB05_15075 PF03301 Tryptophan 2,3-dioxygenase CQB05_15080 PF01494 FAD binding domain CQB05_15085 PF00563 EAL domain CQB05_15085 PF00990 Diguanylate cyclase, GGDEF domain CQB05_15085 PF03707 Bacterial signalling protein N terminal repeat CQB05_15090 PF03707 Bacterial signalling protein N terminal repeat CQB05_15090 PF00990 Diguanylate cyclase, GGDEF domain CQB05_15090 PF00563 EAL domain CQB05_15100 PF00816 H-NS histone family CQB05_15105 PF00149 Calcineurin-like phosphoesterase CQB05_15110 PF00270 DEAD/DEAH box helicase CQB05_15110 PF00271 Helicase conserved C-terminal domain CQB05_15115 PF04228 Putative neutral zinc metallopeptidase CQB05_15140 PF02608 ABC transporter substrate-binding protein PnrA-like CQB05_15145 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain CQB05_15145 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain CQB05_15160 PF00962 Adenosine/AMP deaminase CQB05_15170 PF00355 Rieske [2Fe-2S] domain CQB05_15175 PF02608 ABC transporter substrate-binding protein PnrA-like CQB05_15190 PF00005 ABC transporter CQB05_15200 PF01799 [2Fe-2S] binding domain CQB05_15200 PF00111 2Fe-2S iron-sulfur cluster binding domain CQB05_15200 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase CQB05_15200 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain CQB05_15220 PF00563 EAL domain CQB05_15220 PF05231 MASE1 CQB05_15220 PF08448 PAS fold CQB05_15220 PF13426 PAS domain CQB05_15220 PF00990 Diguanylate cyclase, GGDEF domain CQB05_15220 PF08447 PAS fold CQB05_15230 PF13609 Gram-negative porin CQB05_15240 PF01042 Endoribonuclease L-PSP CQB05_15245 PF17200 Single Cache domain 2 CQB05_15245 PF07730 Histidine kinase CQB05_15250 PF00196 Bacterial regulatory proteins, luxR family CQB05_15250 PF00072 Response regulator receiver domain CQB05_15255 PF03707 Bacterial signalling protein N terminal repeat CQB05_15255 PF00563 EAL domain CQB05_15255 PF00990 Diguanylate cyclase, GGDEF domain CQB05_15275 PF00576 HIUase/Transthyretin family CQB05_15290 PF13660 Domain of unknown function (DUF4147) CQB05_15290 PF05161 MOFRL family CQB05_15295 PF00392 Bacterial regulatory proteins, gntR family CQB05_15295 PF07729 FCD domain CQB05_15305 PF07687 Peptidase dimerisation domain CQB05_15305 PF01546 Peptidase family M20/M25/M40 CQB05_15310 PF07687 Peptidase dimerisation domain CQB05_15310 PF01546 Peptidase family M20/M25/M40 CQB05_15350 PF00375 Sodium:dicarboxylate symporter family CQB05_15355 PF00672 HAMP domain CQB05_15355 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CQB05_15355 PF02203 Tar ligand binding domain homologue CQB05_15360 PF00392 Bacterial regulatory proteins, gntR family CQB05_15360 PF07729 FCD domain CQB05_15365 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin CQB05_15370 PF01177 Asp/Glu/Hydantoin racemase CQB05_15385 PF01515 Phosphate acetyl/butaryl transferase CQB05_15385 PF03949 Malic enzyme, NAD binding domain CQB05_15385 PF00390 Malic enzyme, N-terminal domain CQB05_15400 PF00005 ABC transporter CQB05_15405 PF00528 Binding-protein-dependent transport system inner membrane component CQB05_15430 PF01176 Translation initiation factor 1A / IF-1 CQB05_15450 PF01774 UreD urease accessory protein CQB05_15455 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CQB05_15455 PF00672 HAMP domain CQB05_15455 PF02743 Cache domain CQB05_15460 PF00106 short chain dehydrogenase CQB05_15470 PF07992 Pyridine nucleotide-disulphide oxidoreductase CQB05_15470 PF13192 Thioredoxin domain CQB05_15490 PF01970 Tripartite tricarboxylate transporter TctA family CQB05_15495 PF07331 Tripartite tricarboxylate transporter TctB family CQB05_15515 PF01026 TatD related DNase CQB05_15520 PF00595 PDZ domain CQB05_15525 PF07726 ATPase family associated with various cellular activities (AAA) CQB05_15525 PF17863 AAA lid domain CQB05_15530 PF01882 Protein of unknown function DUF58 CQB05_15535 PF13519 von Willebrand factor type A domain CQB05_15545 PF01784 NIF3 (NGG1p interacting factor 3) CQB05_15550 PF00083 Sugar (and other) transporter CQB05_15550 PF08946 Osmosensory transporter coiled coil CQB05_15555 PF17820 PDZ domain CQB05_15555 PF13180 PDZ domain CQB05_15565 PF00902 Sec-independent protein translocase protein (TatC) CQB05_15570 PF02416 mttA/Hcf106 family CQB05_15575 PF02416 mttA/Hcf106 family CQB05_15580 PF01230 HIT domain CQB05_15595 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase CQB05_15600 PF01502 Phosphoribosyl-AMP cyclohydrolase CQB05_15605 PF00977 Histidine biosynthesis protein CQB05_15615 PF00375 Sodium:dicarboxylate symporter family CQB05_15620 PF16363 GDP-mannose 4,6 dehydratase CQB05_15650 PF11380 Stealth protein CR2, conserved region 2 CQB05_15650 PF17101 Stealth protein CR1, conserved region 1 CQB05_15650 PF17103 Stealth protein CR4, conserved region 4 CQB05_15650 PF00534 Glycosyl transferases group 1 CQB05_15650 PF17102 Stealth protein CR3, conserved region 3 CQB05_15670 PF00977 Histidine biosynthesis protein CQB05_15675 PF00117 Glutamine amidotransferase class-I CQB05_15680 PF00475 Imidazoleglycerol-phosphate dehydratase CQB05_15685 PF00155 Aminotransferase class I and II CQB05_15720 PF01634 ATP phosphoribosyltransferase CQB05_15725 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) CQB05_15730 PF01722 BolA-like protein CQB05_15735 PF01061 ABC-2 type transporter CQB05_15740 PF00005 ABC transporter CQB05_15760 PF04333 MlaA lipoprotein CQB05_15765 PF02470 MlaD protein CQB05_15770 PF02405 Permease MlaE CQB05_15775 PF00005 ABC transporter CQB05_15780 PF00005 ABC transporter CQB05_15785 PF00528 Binding-protein-dependent transport system inner membrane component CQB05_15790 PF00497 Bacterial extracellular solute-binding proteins, family 3 CQB05_15795 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster CQB05_15795 PF07992 Pyridine nucleotide-disulphide oxidoreductase CQB05_15800 PF01493 GXGXG motif CQB05_15800 PF01645 Conserved region in glutamate synthase CQB05_15800 PF00310 Glutamine amidotransferases class-II CQB05_15800 PF04898 Glutamate synthase central domain CQB05_15820 PF01966 HD domain CQB05_15820 PF13286 Phosphohydrolase-associated domain CQB05_15825 PF01761 3-dehydroquinate synthase CQB05_15830 PF01202 Shikimate kinase CQB05_15840 PF03958 Bacterial type II/III secretion system short domain CQB05_15840 PF11741 AMIN domain CQB05_15840 PF07660 Secretin and TonB N terminus short domain CQB05_15840 PF00263 Bacterial type II and III secretion system protein CQB05_15865 PF00905 Penicillin binding protein transpeptidase domain CQB05_15865 PF17092 Penicillin-binding protein OB-like domain CQB05_15865 PF00912 Transglycosylase CQB05_15870 PF01491 Frataxin-like domain CQB05_15880 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain CQB05_15880 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain CQB05_15900 PF01794 Ferric reductase like transmembrane component CQB05_15905 PF00174 Oxidoreductase molybdopterin binding domain CQB05_15910 PF01578 Cytochrome C assembly protein CQB05_15920 PF00034 Cytochrome c CQB05_15925 PF01926 50S ribosome-binding GTPase CQB05_15935 PF03279 Bacterial lipid A biosynthesis acyltransferase CQB05_15945 PF02773 S-adenosylmethionine synthetase, C-terminal domain CQB05_15945 PF00438 S-adenosylmethionine synthetase, N-terminal domain CQB05_15945 PF02772 S-adenosylmethionine synthetase, central domain CQB05_15960 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family CQB05_15960 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain CQB05_15965 PF02540 NAD synthase CQB05_15965 PF00795 Carbon-nitrogen hydrolase CQB05_15970 PF01467 Cytidylyltransferase-like CQB05_15990 PF01546 Peptidase family M20/M25/M40 CQB05_15990 PF07687 Peptidase dimerisation domain CQB05_15995 PF01979 Amidohydrolase family CQB05_16000 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin CQB05_16005 PF01180 Dihydroorotate dehydrogenase CQB05_16010 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster CQB05_16010 PF07992 Pyridine nucleotide-disulphide oxidoreductase CQB05_16015 PF00440 Bacterial regulatory proteins, tetR family CQB05_16015 PF08362 YcdC-like protein, C-terminal region CQB05_16025 PF00535 Glycosyl transferase family 2 CQB05_16040 PF13537 Glutamine amidotransferase domain CQB05_16040 PF00733 Asparagine synthase CQB05_16050 PF00733 Asparagine synthase CQB05_16050 PF13537 Glutamine amidotransferase domain CQB05_16060 PF00534 Glycosyl transferases group 1 CQB05_16060 PF13439 Glycosyltransferase Family 4 CQB05_16065 PF13649 Methyltransferase domain CQB05_16070 PF00005 ABC transporter CQB05_16070 PF14524 Wzt C-terminal domain CQB05_16075 PF01061 ABC-2 type transporter CQB05_16080 PF02350 UDP-N-acetylglucosamine 2-epimerase CQB05_16085 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family CQB05_16090 PF00132 Bacterial transferase hexapeptide (six repeats) CQB05_16095 PF01408 Oxidoreductase family, NAD-binding Rossmann fold CQB05_16095 PF02894 Oxidoreductase family, C-terminal alpha/beta domain CQB05_16100 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain CQB05_16100 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain CQB05_16100 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain CQB05_16105 PF01050 Mannose-6-phosphate isomerase CQB05_16105 PF00483 Nucleotidyl transferase CQB05_16120 PF00166 Chaperonin 10 Kd subunit CQB05_16125 PF00118 TCP-1/cpn60 chaperonin family CQB05_16130 PF00342 Phosphoglucose isomerase CQB05_16135 PF00923 Transaldolase/Fructose-6-phosphate aldolase CQB05_16140 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain CQB05_16140 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain CQB05_16145 PF02685 Glucokinase CQB05_16145 PF01418 Helix-turn-helix domain, rpiR family CQB05_16145 PF01380 SIS domain CQB05_16150 PF00672 HAMP domain CQB05_16150 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CQB05_16150 PF02203 Tar ligand binding domain homologue CQB05_16155 PF08352 Oligopeptide/dipeptide transporter, C-terminal region CQB05_16155 PF00005 ABC transporter CQB05_16160 PF08352 Oligopeptide/dipeptide transporter, C-terminal region CQB05_16160 PF00005 ABC transporter CQB05_16165 PF00528 Binding-protein-dependent transport system inner membrane component CQB05_16165 PF12911 N-terminal TM domain of oligopeptide transport permease C CQB05_16170 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle CQB05_16175 PF07687 Peptidase dimerisation domain CQB05_16175 PF01546 Peptidase family M20/M25/M40 CQB05_16180 PF00528 Binding-protein-dependent transport system inner membrane component CQB05_16185 PF00267 Gram-negative porin CQB05_16190 PF13609 Gram-negative porin CQB05_16195 PF03232 Ubiquinone biosynthesis protein COQ7 CQB05_16200 PF02566 OsmC-like protein CQB05_16210 PF02654 Cobalamin-5-phosphate synthase CQB05_16225 PF07963 Prokaryotic N-terminal methylation motif CQB05_16225 PF08334 Type II secretion system (T2SS), protein G CQB05_16230 PF12019 Type II transport protein GspH CQB05_16235 PF02501 Type II secretion system (T2SS), protein I CQB05_16235 PF07963 Prokaryotic N-terminal methylation motif CQB05_16240 PF07963 Prokaryotic N-terminal methylation motif CQB05_16240 PF11612 Type II secretion system (T2SS), protein J CQB05_16265 PF00263 Bacterial type II and III secretion system protein CQB05_16265 PF03958 Bacterial type II/III secretion system short domain CQB05_16270 PF00437 Type II/IV secretion system protein CQB05_16275 PF03960 ArsC family CQB05_16280 PF00528 Binding-protein-dependent transport system inner membrane component CQB05_16285 PF08402 TOBE domain CQB05_16285 PF00005 ABC transporter CQB05_16290 PF01553 Acyltransferase CQB05_16295 PF01979 Amidohydrolase family CQB05_16300 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain CQB05_16300 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain CQB05_16305 PF00156 Phosphoribosyl transferase domain CQB05_16310 PF03652 Holliday junction resolvase CQB05_16315 PF02622 Uncharacterized ACR, COG1678 CQB05_16320 PF00875 DNA photolyase CQB05_16320 PF03441 FAD binding domain of DNA photolyase CQB05_16325 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CQB05_16325 PF01584 CheW-like domain CQB05_16325 PF01627 Hpt domain CQB05_16325 PF02895 Signal transducing histidine kinase, homodimeric domain CQB05_16325 PF09078 CheY binding CQB05_16330 PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term CQB05_16330 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CQB05_16335 PF01584 CheW-like domain CQB05_16340 PF00072 Response regulator receiver domain CQB05_16345 PF00072 Response regulator receiver domain CQB05_16350 PF00301 Rubredoxin CQB05_16355 PF08543 Phosphomethylpyrimidine kinase CQB05_16355 PF03070 TENA/THI-4/PQQC family CQB05_16355 PF02581 Thiamine monophosphate synthase CQB05_16360 PF00202 Aminotransferase class-III CQB05_16370 PF02142 MGS-like domain CQB05_16370 PF01808 AICARFT/IMPCHase bienzyme CQB05_16380 PF01207 Dihydrouridine synthase (Dus) CQB05_16385 PF08448 PAS fold CQB05_16385 PF00990 Diguanylate cyclase, GGDEF domain CQB05_16390 PF09335 SNARE associated Golgi protein CQB05_16395 PF00892 EamA-like transporter family CQB05_16400 PF00571 CBS domain CQB05_16400 PF00005 ABC transporter CQB05_16415 PF01926 50S ribosome-binding GTPase CQB05_16415 PF06071 Protein of unknown function (DUF933) CQB05_16420 PF03476 MOSC N-terminal beta barrel domain CQB05_16420 PF03473 MOSC domain CQB05_16420 PF00111 2Fe-2S iron-sulfur cluster binding domain CQB05_16425 PF01494 FAD binding domain CQB05_16430 PF10411 Disulfide bond isomerase protein N-terminus CQB05_16430 PF13098 Thioredoxin-like domain CQB05_16440 PF00378 Enoyl-CoA hydratase/isomerase CQB05_16445 PF00158 Sigma-54 interaction domain CQB05_16450 PF03358 NADPH-dependent FMN reductase CQB05_16455 PF00296 Luciferase-like monooxygenase CQB05_16460 PF02771 Acyl-CoA dehydrogenase, N-terminal domain CQB05_16460 PF02770 Acyl-CoA dehydrogenase, middle domain CQB05_16460 PF08028 Acyl-CoA dehydrogenase, C-terminal domain CQB05_16475 PF01938 TRAM domain CQB05_16475 PF04055 Radical SAM superfamily CQB05_16475 PF00919 Uncharacterized protein family UPF0004 CQB05_16480 PF00512 His Kinase A (phospho-acceptor) domain CQB05_16480 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CQB05_16490 PF00158 Sigma-54 interaction domain CQB05_16490 PF00072 Response regulator receiver domain CQB05_16495 PF00535 Glycosyl transferase family 2 CQB05_16500 PF02881 SRP54-type protein, helical bundle domain CQB05_16500 PF02978 Signal peptide binding domain CQB05_16500 PF00448 SRP54-type protein, GTPase domain CQB05_16515 PF00512 His Kinase A (phospho-acceptor) domain CQB05_16515 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CQB05_16520 PF02954 Bacterial regulatory protein, Fis family CQB05_16520 PF00072 Response regulator receiver domain CQB05_16520 PF00158 Sigma-54 interaction domain CQB05_16525 PF01510 N-acetylmuramoyl-L-alanine amidase CQB05_16530 PF00317 Ribonucleotide reductase, all-alpha domain CQB05_16530 PF02867 Ribonucleotide reductase, barrel domain CQB05_16530 PF03477 ATP cone domain CQB05_16535 PF00268 Ribonucleotide reductase, small chain CQB05_16545 PF00294 pfkB family carbohydrate kinase CQB05_16560 PF02785 Biotin carboxylase C-terminal domain CQB05_16560 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain CQB05_16560 PF00289 Biotin carboxylase, N-terminal domain CQB05_16565 PF00364 Biotin-requiring enzyme CQB05_16570 PF08534 Redoxin CQB05_16580 PF02875 Mur ligase family, glutamate ligase domain CQB05_16580 PF01225 Mur ligase family, catalytic domain CQB05_16580 PF08245 Mur ligase middle domain CQB05_16590 PF00793 DAHP synthetase I family CQB05_16600 PF01523 Putative modulator of DNA gyrase CQB05_16605 PF01425 Amidase CQB05_16615 PF01098 Cell cycle protein CQB05_16620 PF05728 Uncharacterised protein family (UPF0227) CQB05_16630 PF00773 RNB domain CQB05_16640 PF01488 Shikimate / quinate 5-dehydrogenase CQB05_16640 PF18317 Shikimate 5'-dehydrogenase C-terminal domain CQB05_16640 PF08501 Shikimate dehydrogenase substrate binding domain CQB05_16645 PF00912 Transglycosylase CQB05_16650 PF09339 IclR helix-turn-helix domain CQB05_16650 PF01614 Bacterial transcriptional regulator CQB05_16655 PF03328 HpcH/HpaI aldolase/citrate lyase family CQB05_16665 PF03401 Tripartite tricarboxylate transporter family receptor CQB05_16680 PF02075 Crossover junction endodeoxyribonuclease RuvC CQB05_16690 PF02203 Tar ligand binding domain homologue CQB05_16690 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CQB05_16690 PF00672 HAMP domain CQB05_16695 PF00672 HAMP domain CQB05_16695 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CQB05_16700 PF13667 ThiC-associated domain CQB05_16700 PF01964 Radical SAM ThiC family CQB05_16705 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase CQB05_16710 PF12327 FtsZ family, C-terminal domain CQB05_16710 PF00091 Tubulin/FtsZ family, GTPase domain CQB05_16715 PF02491 SHS2 domain inserted in FTSA CQB05_16720 PF03799 Cell division protein FtsQ CQB05_16720 PF08478 POTRA domain, FtsQ-type CQB05_16725 PF07478 D-ala D-ala ligase C-terminus CQB05_16725 PF01820 D-ala D-ala ligase N-terminus CQB05_16730 PF08245 Mur ligase middle domain CQB05_16730 PF02875 Mur ligase family, glutamate ligase domain CQB05_16730 PF01225 Mur ligase family, catalytic domain CQB05_16735 PF03033 Glycosyltransferase family 28 N-terminal domain CQB05_16735 PF04101 Glycosyltransferase family 28 C-terminal domain CQB05_16740 PF01098 Cell cycle protein CQB05_16745 PF02875 Mur ligase family, glutamate ligase domain CQB05_16745 PF08245 Mur ligase middle domain CQB05_16750 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 CQB05_16750 PF00953 Glycosyl transferase family 4 CQB05_16755 PF02875 Mur ligase family, glutamate ligase domain CQB05_16755 PF01225 Mur ligase family, catalytic domain CQB05_16755 PF08245 Mur ligase middle domain CQB05_16760 PF02875 Mur ligase family, glutamate ligase domain CQB05_16760 PF08245 Mur ligase middle domain CQB05_16765 PF00905 Penicillin binding protein transpeptidase domain CQB05_16765 PF03717 Penicillin-binding Protein dimerisation domain CQB05_16770 PF04999 Cell division protein FtsL CQB05_16775 PF01795 MraW methylase family CQB05_16780 PF02381 MraZ protein, putative antitoxin-like CQB05_16785 PF00004 ATPase family associated with various cellular activities (AAA) CQB05_16785 PF07724 AAA domain (Cdc48 subfamily) CQB05_16790 PF00227 Proteasome subunit CQB05_16800 PF01258 Prokaryotic dksA/traR C4-type zinc finger CQB05_16810 PF00563 EAL domain CQB05_16810 PF08448 PAS fold CQB05_16810 PF08447 PAS fold CQB05_16810 PF13426 PAS domain CQB05_16810 PF05231 MASE1 CQB05_16810 PF00990 Diguanylate cyclase, GGDEF domain CQB05_16815 PF10672 S-adenosylmethionine-dependent methyltransferase CQB05_16815 PF17785 PUA-like domain CQB05_16825 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CQB05_16825 PF00672 HAMP domain CQB05_16825 PF12729 Four helix bundle sensory module for signal transduction CQB05_16835 PF02899 Phage integrase, N-terminal SAM-like domain CQB05_16835 PF00589 Phage integrase family CQB05_16845 PF01678 Diaminopimelate epimerase CQB05_16850 PF02798 Glutathione S-transferase, N-terminal domain CQB05_16870 PF01494 FAD binding domain CQB05_16880 PF01479 S4 domain CQB05_16880 PF00849 RNA pseudouridylate synthase CQB05_16885 PF05987 Bacterial protein of unknown function (DUF898) CQB05_16900 PF16537 Type II secretion system protein B CQB05_16905 PF13401 AAA domain CQB05_16905 PF01471 Putative peptidoglycan binding domain CQB05_16910 PF00501 AMP-binding enzyme CQB05_16915 PF12399 Branched-chain amino acid ATP-binding cassette transporter CQB05_16915 PF00005 ABC transporter CQB05_16920 PF02653 Branched-chain amino acid transport system / permease component CQB05_16925 PF02653 Branched-chain amino acid transport system / permease component CQB05_16925 PF11862 Domain of unknown function (DUF3382) CQB05_16935 PF00005 ABC transporter CQB05_16940 PF00501 AMP-binding enzyme CQB05_16940 PF14535 AMP-binding enzyme C-terminal domain CQB05_16945 PF03401 Tripartite tricarboxylate transporter family receptor CQB05_16950 PF03401 Tripartite tricarboxylate transporter family receptor CQB05_16965 PF00958 GMP synthase C terminal domain CQB05_16965 PF00117 Glutamine amidotransferase class-I CQB05_16965 PF03352 Methyladenine glycosylase CQB05_16965 PF13673 Acetyltransferase (GNAT) domain CQB05_16965 PF13302 Acetyltransferase (GNAT) domain CQB05_16980 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CQB05_16980 PF00672 HAMP domain CQB05_16980 PF02203 Tar ligand binding domain homologue CQB05_16990 PF07687 Peptidase dimerisation domain CQB05_16990 PF01546 Peptidase family M20/M25/M40 CQB05_16995 PF07687 Peptidase dimerisation domain CQB05_16995 PF01546 Peptidase family M20/M25/M40 CQB05_17005 PF00384 Molybdopterin oxidoreductase CQB05_17005 PF01568 Molydopterin dinucleotide binding domain CQB05_17005 PF04879 Molybdopterin oxidoreductase Fe4S4 domain CQB05_17030 PF07690 Major Facilitator Superfamily CQB05_17040 PF07969 Amidohydrolase family CQB05_17045 PF00857 Isochorismatase family CQB05_17050 PF02678 Pirin CQB05_17050 PF17954 Quercetinase C-terminal cupin domain CQB05_17055 PF03466 LysR substrate binding domain CQB05_17055 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CQB05_17060 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CQB05_17060 PF03466 LysR substrate binding domain CQB05_17065 PF03480 Bacterial extracellular solute-binding protein, family 7 CQB05_17070 PF00920 Dehydratase family CQB05_17080 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component CQB05_17085 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component CQB05_17095 PF17158 Membrane-associated sensor, integral membrane domain CQB05_17095 PF00990 Diguanylate cyclase, GGDEF domain CQB05_17105 PF03006 Haemolysin-III related CQB05_17110 PF00563 EAL domain CQB05_17110 PF00990 Diguanylate cyclase, GGDEF domain CQB05_17110 PF13185 GAF domain CQB05_17120 PF03401 Tripartite tricarboxylate transporter family receptor CQB05_17150 PF07690 Major Facilitator Superfamily CQB05_17170 PF03524 Conjugal transfer protein CQB05_17180 PF04610 TrbL/VirB6 plasmid conjugal transfer protein CQB05_17195 PF03135 CagE, TrbE, VirB family, component of type IV transporter system CQB05_17205 PF04956 TrbC/VIRB2 family CQB05_17210 PF00437 Type II/IV secretion system protein CQB05_17220 PF02534 Type IV secretory system Conjugative DNA transfer CQB05_17255 PF00893 Small Multidrug Resistance protein CQB05_17260 PF07690 Major Facilitator Superfamily CQB05_17265 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CQB05_17265 PF03466 LysR substrate binding domain CQB05_17270 PF00248 Aldo/keto reductase family CQB05_17280 PF02525 Flavodoxin-like fold CQB05_17295 PF13005 zinc-finger binding domain of transposase IS66 CQB05_17295 PF13817 IS66 C-terminal element CQB05_17295 PF03050 Transposase IS66 family CQB05_17295 PF13007 Transposase C of IS166 homeodomain CQB05_17305 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CQB05_17305 PF03466 LysR substrate binding domain CQB05_17315 PF07690 Major Facilitator Superfamily CQB05_17320 PF07690 Major Facilitator Superfamily CQB05_17325 PF02525 Flavodoxin-like fold CQB05_17330 PF03466 LysR substrate binding domain CQB05_17330 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CQB05_17335 PF00291 Pyridoxal-phosphate dependent enzyme CQB05_17365 PF10502 Signal peptidase, peptidase S26 CQB05_17380 PF13614 AAA domain CQB05_17415 PF05284 Protein of unknown function (DUF736) CQB05_17420 PF17762 HTH domain found in ParB protein CQB05_17420 PF02195 ParB-like nuclease domain CQB05_17425 PF06067 Domain of unknown function (DUF932) CQB05_17440 PF02463 RecF/RecN/SMC N terminal domain CQB05_17445 PF00580 UvrD/REP helicase N-terminal domain CQB05_17445 PF13361 UvrD-like helicase C-terminal domain CQB05_17470 PF01885 RNA 2'-phosphotransferase, Tpt1 / KptA family CQB05_17475 PF01814 Hemerythrin HHE cation binding domain CQB05_17485 PF03477 ATP cone domain CQB05_17485 PF00317 Ribonucleotide reductase, all-alpha domain CQB05_17485 PF02867 Ribonucleotide reductase, barrel domain CQB05_17490 PF00484 Carbonic anhydrase CQB05_17495 PF00639 PPIC-type PPIASE domain CQB05_17495 PF09312 SurA N-terminal domain CQB05_17500 PF02665 Nitrate reductase gamma subunit CQB05_17505 PF02613 Nitrate reductase delta subunit CQB05_17510 PF13247 4Fe-4S dicluster domain CQB05_17510 PF14711 Respiratory nitrate reductase beta C-terminal CQB05_17515 PF00384 Molybdopterin oxidoreductase CQB05_17515 PF01568 Molydopterin dinucleotide binding domain CQB05_17515 PF14710 Respiratory nitrate reductase alpha N-terminal CQB05_17525 PF07690 Major Facilitator Superfamily CQB05_17535 PF07715 TonB-dependent Receptor Plug Domain CQB05_17535 PF00593 TonB dependent receptor CQB05_17550 PF00072 Response regulator receiver domain CQB05_17550 PF00196 Bacterial regulatory proteins, luxR family CQB05_17565 PF02308 MgtC family CQB05_17575 PF03707 Bacterial signalling protein N terminal repeat CQB05_17575 PF00990 Diguanylate cyclase, GGDEF domain CQB05_17575 PF00563 EAL domain CQB05_17580 PF00551 Formyl transferase CQB05_17585 PF03466 LysR substrate binding domain CQB05_17585 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CQB05_17595 PF02913 FAD linked oxidases, C-terminal domain CQB05_17595 PF01565 FAD binding domain CQB05_17615 PF04286 Protein of unknown function (DUF445) CQB05_17625 PF01212 Beta-eliminating lyase CQB05_17630 PF01168 Alanine racemase, N-terminal domain CQB05_17635 PF00437 Type II/IV secretion system protein CQB05_17640 PF00027 Cyclic nucleotide-binding domain CQB05_17640 PF13545 Crp-like helix-turn-helix domain CQB05_17645 PF00437 Type II/IV secretion system protein CQB05_17655 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase CQB05_17655 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase CQB05_17660 PF04972 BON domain CQB05_17665 PF13580 SIS domain CQB05_17670 PF02021 Uncharacterised protein family UPF0102 CQB05_17675 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases CQB05_17680 PF00012 Hsp70 protein CQB05_17690 PF01196 Ribosomal protein L17 CQB05_17695 PF01000 RNA polymerase Rpb3/RpoA insert domain CQB05_17695 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain CQB05_17695 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain CQB05_17700 PF00163 Ribosomal protein S4/S9 N-terminal domain CQB05_17700 PF01479 S4 domain CQB05_17705 PF00411 Ribosomal protein S11 CQB05_17710 PF00416 Ribosomal protein S13/S18 CQB05_17715 PF00444 Ribosomal protein L36 CQB05_17720 PF00344 SecY translocase CQB05_17725 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A CQB05_17730 PF00327 Ribosomal protein L30p/L7e CQB05_17735 PF03719 Ribosomal protein S5, C-terminal domain CQB05_17735 PF00333 Ribosomal protein S5, N-terminal domain CQB05_17740 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast CQB05_17745 PF00347 Ribosomal protein L6 CQB05_17750 PF00410 Ribosomal protein S8 CQB05_17755 PF00253 Ribosomal protein S14p/S29e CQB05_17760 PF00673 ribosomal L5P family C-terminus CQB05_17760 PF00281 Ribosomal protein L5 CQB05_17765 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 CQB05_17770 PF00238 Ribosomal protein L14p/L23e CQB05_17775 PF16901 C-terminal domain of alpha-glycerophosphate oxidase CQB05_17775 PF01266 FAD dependent oxidoreductase CQB05_17790 PF00528 Binding-protein-dependent transport system inner membrane component CQB05_17795 PF00528 Binding-protein-dependent transport system inner membrane component CQB05_17800 PF00005 ABC transporter CQB05_17800 PF08402 TOBE domain CQB05_17805 PF17912 MalK OB fold domain CQB05_17805 PF00005 ABC transporter CQB05_17810 PF02782 FGGY family of carbohydrate kinases, C-terminal domain CQB05_17810 PF00370 FGGY family of carbohydrate kinases, N-terminal domain CQB05_17815 PF14748 Pyrroline-5-carboxylate reductase dimerisation CQB05_17815 PF03807 NADP oxidoreductase coenzyme F420-dependent CQB05_17825 PF00535 Glycosyl transferase family 2 CQB05_17840 PF01040 UbiA prenyltransferase family CQB05_17845 PF00210 Ferritin-like domain CQB05_17850 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CQB05_17850 PF03466 LysR substrate binding domain CQB05_17855 PF00270 DEAD/DEAH box helicase CQB05_17855 PF17191 RecG wedge domain CQB05_17855 PF00271 Helicase conserved C-terminal domain CQB05_17860 PF11871 Domain of unknown function (DUF3391) CQB05_17860 PF01966 HD domain CQB05_17875 PF02547 Queuosine biosynthesis protein CQB05_17890 PF03167 Uracil DNA glycosylase superfamily CQB05_17895 PF00218 Indole-3-glycerol phosphate synthase CQB05_17900 PF00591 Glycosyl transferase family, a/b domain CQB05_17900 PF02885 Glycosyl transferase family, helical bundle domain CQB05_17905 PF01810 LysE type translocator CQB05_17910 PF00117 Glutamine amidotransferase class-I CQB05_17930 PF04014 Antidote-toxin recognition MazE, bacterial antitoxin CQB05_17935 PF00271 Helicase conserved C-terminal domain CQB05_17935 PF04851 Type III restriction enzyme, res subunit CQB05_17935 PF08463 EcoEI R protein C-terminal CQB05_17935 PF13588 Type I restriction enzyme R protein N terminus (HSDR_N) CQB05_17945 PF03401 Tripartite tricarboxylate transporter family receptor CQB05_17950 PF01042 Endoribonuclease L-PSP CQB05_17965 PF01266 FAD dependent oxidoreductase CQB05_17975 PF03466 LysR substrate binding domain CQB05_17975 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CQB05_17980 PF00892 EamA-like transporter family CQB05_17985 PF02558 Ketopantoate reductase PanE/ApbA CQB05_17985 PF02317 NAD/NADP octopine/nopaline dehydrogenase, alpha-helical domain CQB05_18000 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain CQB05_18035 PF01555 DNA methylase CQB05_18045 PF01131 DNA topoisomerase CQB05_18045 PF01751 Toprim domain CQB05_18050 PF00145 C-5 cytosine-specific DNA methylase CQB05_18235 PF07733 Bacterial DNA polymerase III alpha NTPase domain CQB05_18235 PF14579 Helix-hairpin-helix motif CQB05_18235 PF02811 PHP domain CQB05_18235 PF17657 Bacterial DNA polymerase III alpha subunit finger domain CQB05_18270 PF02796 Helix-turn-helix domain of resolvase CQB05_18270 PF00239 Resolvase, N terminal domain CQB05_18340 PF14220 Domain of unknown function (DUF4329) CQB05_18340 PF05593 RHS Repeat CQB05_18340 PF03527 RHS protein CQB05_18350 PF04717 Type VI secretion system, phage-baseplate injector CQB05_18355 PF03466 LysR substrate binding domain CQB05_18355 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CQB05_18360 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase CQB05_18360 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase CQB05_18365 PF03401 Tripartite tricarboxylate transporter family receptor CQB05_18375 PF04002 RadC-like JAB domain CQB05_18415 PF13356 Arm DNA-binding domain CQB05_18415 PF00589 Phage integrase family CQB05_18430 PF04717 Type VI secretion system, phage-baseplate injector CQB05_18455 PF01551 Peptidase family M23 CQB05_18455 PF10145 Phage-related minor tail protein CQB05_18455 PF01464 Transglycosylase SLT domain CQB05_18460 PF13847 Methyltransferase domain CQB05_18460 PF10119 Predicted methyltransferase regulatory domain CQB05_18510 PF01514 Secretory protein of YscJ/FliF family CQB05_18525 PF02874 ATP synthase alpha/beta family, beta-barrel domain CQB05_18525 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain CQB05_18525 PF18269 T3SS EscN ATPase C-terminal domain CQB05_18575 PF01312 FlhB HrpN YscU SpaS Family CQB05_18580 PF00771 FHIPEP family CQB05_18595 PF00813 FliP family CQB05_18600 PF01313 Bacterial export proteins, family 3 CQB05_18620 PF12833 Helix-turn-helix domain CQB05_18640 PF13419 Haloacid dehalogenase-like hydrolase CQB05_18650 PF00834 Ribulose-phosphate 3 epimerase family CQB05_18655 PF04379 ApaG domain CQB05_18670 PF04107 Glutamate-cysteine ligase family 2(GCS2) CQB05_18690 PF04608 Phosphatidylglycerophosphatase A CQB05_18695 PF02464 Competence-damaged protein CQB05_18700 PF02203 Tar ligand binding domain homologue CQB05_18700 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CQB05_18700 PF00672 HAMP domain CQB05_18705 PF01740 STAS domain CQB05_18705 PF00916 Sulfate permease family CQB05_18710 PF01043 SecA preprotein cross-linking domain CQB05_18710 PF07516 SecA Wing and Scaffold domain CQB05_18710 PF02810 SEC-C motif CQB05_18710 PF07517 SecA DEAD-like domain CQB05_18720 PF06472 ABC transporter transmembrane region 2 CQB05_18720 PF00005 ABC transporter CQB05_18730 PF01170 Putative RNA methylase family UPF0020 CQB05_18730 PF02926 THUMP domain CQB05_18735 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CQB05_18735 PF00672 HAMP domain CQB05_18735 PF02743 Cache domain CQB05_18740 PF03073 TspO/MBR family CQB05_18745 PF04552 Sigma-54, DNA binding domain CQB05_18745 PF00309 Sigma-54 factor, Activator interacting domain (AID) CQB05_18745 PF04963 Sigma-54 factor, core binding domain CQB05_18750 PF00005 ABC transporter CQB05_18760 PF00085 Thioredoxin CQB05_18760 PF01323 DSBA-like thioredoxin domain CQB05_18770 PF05746 DALR anticodon binding domain CQB05_18770 PF00750 tRNA synthetases class I (R) CQB05_18770 PF03485 Arginyl tRNA synthetase N terminal domain CQB05_18785 PF01011 PQQ enzyme repeat CQB05_18795 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CQB05_18795 PF03466 LysR substrate binding domain CQB05_18800 PF01274 Malate synthase CQB05_18805 PF02203 Tar ligand binding domain homologue CQB05_18805 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CQB05_18805 PF00672 HAMP domain CQB05_18815 PF01361 Tautomerase enzyme CQB05_18820 PF07690 Major Facilitator Superfamily CQB05_18825 PF13230 Glutamine amidotransferases class-II CQB05_18835 PF00589 Phage integrase family CQB05_18885 PF08361 MAATS-type transcriptional repressor, C-terminal region CQB05_18885 PF00440 Bacterial regulatory proteins, tetR family CQB05_18890 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion CQB05_18890 PF00529 HlyD membrane-fusion protein of T1SS CQB05_18895 PF00873 AcrB/AcrD/AcrF family CQB05_18905 PF01344 Kelch motif CQB05_18955 PF00270 DEAD/DEAH box helicase CQB05_18955 PF08494 DEAD/H associated CQB05_18955 PF00271 Helicase conserved C-terminal domain CQB05_18960 PF04679 ATP dependent DNA ligase C terminal region CQB05_18960 PF04675 DNA ligase N terminus CQB05_18960 PF01068 ATP dependent DNA ligase domain CQB05_18965 PF04675 DNA ligase N terminus CQB05_18965 PF01068 ATP dependent DNA ligase domain CQB05_18965 PF04679 ATP dependent DNA ligase C terminal region CQB05_18970 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain CQB05_18975 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain CQB05_18975 PF02874 ATP synthase alpha/beta family, beta-barrel domain CQB05_18980 PF00231 ATP synthase CQB05_18985 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain CQB05_18985 PF02874 ATP synthase alpha/beta family, beta-barrel domain CQB05_18985 PF00306 ATP synthase alpha/beta chain, C terminal domain CQB05_18990 PF00213 ATP synthase delta (OSCP) subunit CQB05_18995 PF00430 ATP synthase B/B' CF(0) CQB05_19000 PF00137 ATP synthase subunit C CQB05_19005 PF00119 ATP synthase A chain CQB05_19015 PF04359 Protein of unknown function (DUF493) CQB05_19020 PF03099 Biotin/lipoate A/B protein ligase family CQB05_19025 PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family CQB05_19025 PF04055 Radical SAM superfamily CQB05_19040 PF00486 Transcriptional regulatory protein, C terminal CQB05_19040 PF00072 Response regulator receiver domain CQB05_19045 PF02702 Osmosensitive K+ channel His kinase sensor domain CQB05_19045 PF13492 GAF domain CQB05_19045 PF00512 His Kinase A (phospho-acceptor) domain CQB05_19045 PF13493 Domain of unknown function (DUF4118) CQB05_19045 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CQB05_19050 PF02669 K+-transporting ATPase, c chain CQB05_19060 PF03814 Potassium-transporting ATPase A subunit CQB05_19070 PF00391 PEP-utilising enzyme, mobile domain CQB05_19070 PF02896 PEP-utilising enzyme, TIM barrel domain CQB05_19070 PF05524 PEP-utilising enzyme, N-terminal CQB05_19075 PF00381 PTS HPr component phosphorylation site CQB05_19090 PF00578 AhpC/TSA family CQB05_19100 PF08534 Redoxin CQB05_19105 PF00366 Ribosomal protein S17 CQB05_19110 PF00831 Ribosomal L29 protein CQB05_19115 PF00252 Ribosomal protein L16p/L10e CQB05_19120 PF07650 KH domain CQB05_19120 PF00189 Ribosomal protein S3, C-terminal domain CQB05_19125 PF00237 Ribosomal protein L22p/L17e CQB05_19130 PF00203 Ribosomal protein S19 CQB05_19135 PF00181 Ribosomal Proteins L2, RNA binding domain CQB05_19135 PF03947 Ribosomal Proteins L2, C-terminal domain CQB05_19140 PF00276 Ribosomal protein L23 CQB05_19145 PF00573 Ribosomal protein L4/L1 family CQB05_19150 PF00297 Ribosomal protein L3 CQB05_19155 PF00338 Ribosomal protein S10p/S20e CQB05_19160 PF00009 Elongation factor Tu GTP binding domain CQB05_19160 PF03143 Elongation factor Tu C-terminal domain CQB05_19160 PF03144 Elongation factor Tu domain 2 CQB05_19165 PF03144 Elongation factor Tu domain 2 CQB05_19165 PF00009 Elongation factor Tu GTP binding domain CQB05_19165 PF00679 Elongation factor G C-terminus CQB05_19165 PF03764 Elongation factor G, domain IV CQB05_19165 PF14492 Elongation Factor G, domain II CQB05_19170 PF00177 Ribosomal protein S7p/S5e CQB05_19175 PF00164 Ribosomal protein S12/S23 CQB05_19180 PF00768 D-alanyl-D-alanine carboxypeptidase CQB05_19180 PF07943 Penicillin-binding protein 5, C-terminal domain CQB05_19185 PF02129 X-Pro dipeptidyl-peptidase (S15 family) CQB05_19205 PF00490 Delta-aminolevulinic acid dehydratase CQB05_19210 PF01544 CorA-like Mg2+ transporter protein CQB05_19215 PF00958 GMP synthase C terminal domain CQB05_19215 PF00117 Glutamine amidotransferase class-I CQB05_19215 PF02540 NAD synthase CQB05_19220 PF01047 MarR family CQB05_19225 PF02321 Outer membrane efflux protein CQB05_19230 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion CQB05_19230 PF00529 HlyD membrane-fusion protein of T1SS CQB05_19235 PF07690 Major Facilitator Superfamily CQB05_19240 PF01738 Dienelactone hydrolase family CQB05_19250 PF01914 MarC family integral membrane protein CQB05_19255 PF00072 Response regulator receiver domain CQB05_19255 PF00486 Transcriptional regulatory protein, C terminal CQB05_19260 PF00512 His Kinase A (phospho-acceptor) domain CQB05_19260 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CQB05_19260 PF00672 HAMP domain CQB05_19265 PF06123 Inner membrane protein CreD CQB05_19285 PF05532 CsbD-like CQB05_19290 PF01507 Phosphoadenosine phosphosulfate reductase family CQB05_19310 PF00005 ABC transporter CQB05_19315 PF02405 Permease MlaE CQB05_19320 PF00732 GMC oxidoreductase CQB05_19320 PF05199 GMC oxidoreductase CQB05_19325 PF01925 Sulfite exporter TauE/SafE CQB05_19330 PF03466 LysR substrate binding domain CQB05_19330 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CQB05_19335 PF03315 Serine dehydratase beta chain CQB05_19335 PF03313 Serine dehydratase alpha chain CQB05_19340 PF00497 Bacterial extracellular solute-binding proteins, family 3 CQB05_19345 PF00528 Binding-protein-dependent transport system inner membrane component CQB05_19350 PF00005 ABC transporter CQB05_19360 PF03717 Penicillin-binding Protein dimerisation domain CQB05_19360 PF00905 Penicillin binding protein transpeptidase domain CQB05_19365 PF04093 rod shape-determining protein MreD CQB05_19380 PF02686 Glu-tRNAGln amidotransferase C subunit CQB05_19385 PF01425 Amidase CQB05_19390 PF02934 GatB/GatE catalytic domain CQB05_19390 PF02637 GatB domain CQB05_19400 PF00156 Phosphoribosyl transferase domain CQB05_19405 PF03372 Endonuclease/Exonuclease/phosphatase family CQB05_19410 PF00248 Aldo/keto reductase family CQB05_19415 PF07690 Major Facilitator Superfamily CQB05_19420 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CQB05_19420 PF03466 LysR substrate binding domain CQB05_19440 PF00753 Metallo-beta-lactamase superfamily CQB05_19445 PF00939 Sodium:sulfate symporter transmembrane region CQB05_19450 PF01435 Peptidase family M48 CQB05_19470 PF07690 Major Facilitator Superfamily CQB05_19475 PF00486 Transcriptional regulatory protein, C terminal CQB05_19475 PF00072 Response regulator receiver domain CQB05_19485 PF06779 Uncharacterised MFS-type transporter YbfB CQB05_19490 PF03466 LysR substrate binding domain CQB05_19490 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CQB05_19495 PF03060 Nitronate monooxygenase CQB05_19530 PF01063 Amino-transferase class IV CQB05_19540 PF18073 Rubredoxin metal binding domain CQB05_19550 PF02558 Ketopantoate reductase PanE/ApbA CQB05_19550 PF08546 Ketopantoate reductase PanE/ApbA C terminal CQB05_19565 PF03401 Tripartite tricarboxylate transporter family receptor CQB05_19575 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle CQB05_19585 PF01168 Alanine racemase, N-terminal domain CQB05_19585 PF00842 Alanine racemase, C-terminal domain CQB05_19590 PF07690 Major Facilitator Superfamily CQB05_19600 PF00255 Glutathione peroxidase CQB05_19630 PF02754 Cysteine-rich domain CQB05_19630 PF13183 4Fe-4S dicluster domain CQB05_19640 PF01565 FAD binding domain CQB05_19645 PF04717 Type VI secretion system, phage-baseplate injector CQB05_19675 PF08450 SMP-30/Gluconolactonase/LRE-like region CQB05_19680 PF00909 Ammonium Transporter Family CQB05_19685 PF00543 Nitrogen regulatory protein P-II CQB05_19695 PF01078 Magnesium chelatase, subunit ChlI CQB05_19695 PF13335 Magnesium chelatase, subunit ChlI C-terminal CQB05_19700 PF00158 Sigma-54 interaction domain CQB05_19700 PF02954 Bacterial regulatory protein, Fis family CQB05_19700 PF00072 Response regulator receiver domain CQB05_19705 PF00512 His Kinase A (phospho-acceptor) domain CQB05_19705 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CQB05_19710 PF03401 Tripartite tricarboxylate transporter family receptor CQB05_19715 PF00672 HAMP domain CQB05_19715 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CQB05_19715 PF02203 Tar ligand binding domain homologue CQB05_19725 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CQB05_19725 PF03466 LysR substrate binding domain CQB05_19730 PF00970 Oxidoreductase FAD-binding domain CQB05_19730 PF00175 Oxidoreductase NAD-binding domain CQB05_19750 PF00990 Diguanylate cyclase, GGDEF domain CQB05_19750 PF00563 EAL domain CQB05_19750 PF03707 Bacterial signalling protein N terminal repeat CQB05_19755 PF05506 Domain of unknown function (DUF756) CQB05_19755 PF04185 Phosphoesterase family CQB05_19770 PF01204 Trehalase CQB05_19785 PF02607 B12 binding domain CQB05_19785 PF00809 Pterin binding enzyme CQB05_19785 PF02965 Vitamin B12 dependent methionine synthase, activation domain CQB05_19785 PF02310 B12 binding domain CQB05_19785 PF02574 Homocysteine S-methyltransferase CQB05_19795 PF07729 FCD domain CQB05_19795 PF00392 Bacterial regulatory proteins, gntR family CQB05_19805 PF00528 Binding-protein-dependent transport system inner membrane component CQB05_19820 PF04115 Ureidoglycolate lyase CQB05_19830 PF00497 Bacterial extracellular solute-binding proteins, family 3 CQB05_19855 PF03401 Tripartite tricarboxylate transporter family receptor CQB05_19860 PF13378 Enolase C-terminal domain-like CQB05_19860 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain CQB05_19880 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CQB05_19895 PF00593 TonB dependent receptor CQB05_19895 PF07715 TonB-dependent Receptor Plug Domain CQB05_19900 PF01425 Amidase CQB05_19905 PF03976 Polyphosphate kinase 2 (PPK2) CQB05_19915 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase CQB05_19915 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain CQB05_19950 PF00270 DEAD/DEAH box helicase CQB05_19950 PF00570 HRDC domain CQB05_19950 PF00271 Helicase conserved C-terminal domain CQB05_19950 PF09382 RQC domain CQB05_19950 PF16124 RecQ zinc-binding CQB05_19955 PF03401 Tripartite tricarboxylate transporter family receptor CQB05_19965 PF02515 CoA-transferase family III CQB05_19975 PF00441 Acyl-CoA dehydrogenase, C-terminal domain CQB05_19975 PF02770 Acyl-CoA dehydrogenase, middle domain CQB05_19975 PF02771 Acyl-CoA dehydrogenase, N-terminal domain CQB05_19980 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CQB05_19980 PF03466 LysR substrate binding domain CQB05_19985 PF02574 Homocysteine S-methyltransferase CQB05_19985 PF00809 Pterin binding enzyme CQB05_19985 PF02965 Vitamin B12 dependent methionine synthase, activation domain CQB05_19985 PF02607 B12 binding domain CQB05_19985 PF02310 B12 binding domain CQB05_19990 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CQB05_19990 PF00512 His Kinase A (phospho-acceptor) domain CQB05_19995 PF00072 Response regulator receiver domain CQB05_19995 PF02954 Bacterial regulatory protein, Fis family CQB05_19995 PF00158 Sigma-54 interaction domain CQB05_20010 PF07690 Major Facilitator Superfamily CQB05_20015 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CQB05_20015 PF00672 HAMP domain CQB05_20015 PF02203 Tar ligand binding domain homologue CQB05_20020 PF00355 Rieske [2Fe-2S] domain CQB05_20025 PF13577 SnoaL-like domain CQB05_20030 PF00355 Rieske [2Fe-2S] domain CQB05_20030 PF00848 Ring hydroxylating alpha subunit (catalytic domain) CQB05_20035 PF00111 2Fe-2S iron-sulfur cluster binding domain CQB05_20035 PF00175 Oxidoreductase NAD-binding domain CQB05_20035 PF00970 Oxidoreductase FAD-binding domain CQB05_20045 PF04851 Type III restriction enzyme, res subunit CQB05_20045 PF08774 VRR-NUC domain CQB05_20060 PF18273 Type III R-M EcoP15I C-terminal domain CQB05_20060 PF01555 DNA methylase CQB05_20070 PF00271 Helicase conserved C-terminal domain CQB05_20070 PF00176 SNF2 family N-terminal domain CQB05_20080 PF03922 OmpW family CQB05_20100 PF02423 Ornithine cyclodeaminase/mu-crystallin family CQB05_20110 PF07690 Major Facilitator Superfamily CQB05_20115 PF14497 Glutathione S-transferase, C-terminal domain CQB05_20115 PF02798 Glutathione S-transferase, N-terminal domain CQB05_20120 PF01557 Fumarylacetoacetate (FAA) hydrolase family CQB05_20125 PF07883 Cupin domain CQB05_20130 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CQB05_20130 PF03466 LysR substrate binding domain CQB05_20135 PF00441 Acyl-CoA dehydrogenase, C-terminal domain CQB05_20135 PF18158 Adaptive response protein AidB N-terminal domain CQB05_20135 PF02770 Acyl-CoA dehydrogenase, middle domain CQB05_20145 PF13291 ACT domain CQB05_20145 PF00291 Pyridoxal-phosphate dependent enzyme CQB05_20150 PF04349 Periplasmic glucan biosynthesis protein, MdoG CQB05_20155 PF06508 Queuosine biosynthesis protein QueC CQB05_20160 PF17297 Phosphoenolpyruvate carboxykinase N-terminal domain CQB05_20160 PF00821 Phosphoenolpyruvate carboxykinase C-terminal P-loop domain CQB05_20180 PF00582 Universal stress protein family CQB05_20185 PF00440 Bacterial regulatory proteins, tetR family CQB05_20190 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CQB05_20190 PF03466 LysR substrate binding domain CQB05_20195 PF01266 FAD dependent oxidoreductase CQB05_20200 PF02525 Flavodoxin-like fold CQB05_20210 PF00561 alpha/beta hydrolase fold CQB05_20215 PF01613 Flavin reductase like domain CQB05_20220 PF03776 Septum formation topological specificity factor MinE CQB05_20225 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain CQB05_20230 PF05209 Septum formation inhibitor MinC, N-terminal domain CQB05_20230 PF03775 Septum formation inhibitor MinC, C-terminal domain CQB05_20235 PF01066 CDP-alcohol phosphatidyltransferase CQB05_20245 PF02423 Ornithine cyclodeaminase/mu-crystallin family CQB05_20250 PF00491 Arginase family CQB05_20255 PF00501 AMP-binding enzyme CQB05_20255 PF13193 AMP-binding enzyme C-terminal domain CQB05_20265 PF01435 Peptidase family M48 CQB05_20270 PF09339 IclR helix-turn-helix domain CQB05_20270 PF01614 Bacterial transcriptional regulator CQB05_20275 PF00171 Aldehyde dehydrogenase family CQB05_20285 PF01494 FAD binding domain CQB05_20290 PF00528 Binding-protein-dependent transport system inner membrane component CQB05_20295 PF00005 ABC transporter CQB05_20300 PF12706 Beta-lactamase superfamily domain CQB05_20325 PF00132 Bacterial transferase hexapeptide (six repeats) CQB05_20335 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CQB05_20335 PF02203 Tar ligand binding domain homologue CQB05_20335 PF00672 HAMP domain CQB05_20345 PF00860 Permease family CQB05_20355 PF13336 Acetyl-CoA hydrolase/transferase C-terminal domain CQB05_20355 PF02550 Acetyl-CoA hydrolase/transferase N-terminal domain CQB05_20360 PF03061 Thioesterase superfamily CQB05_20365 PF01923 Cobalamin adenosyltransferase CQB05_20380 PF01565 FAD binding domain CQB05_20380 PF02913 FAD linked oxidases, C-terminal domain CQB05_20430 PF03543 Yersinia/Haemophilus virulence surface antigen CQB05_20455 PF01613 Flavin reductase like domain CQB05_20475 PF01077 Nitrite and sulphite reductase 4Fe-4S domain CQB05_20475 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases CQB05_20490 PF01890 Cobalamin synthesis G C-terminus CQB05_20490 PF11761 Cobalamin biosynthesis central region CQB05_20490 PF11760 Cobalamin synthesis G N-terminal CQB05_20500 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases CQB05_20505 PF01888 CbiD CQB05_20510 PF02570 Precorrin-8X methylmutase CQB05_20515 PF01903 CbiX CQB05_20520 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases CQB05_20525 PF00135 Carboxylesterase family CQB05_20540 PF01040 UbiA prenyltransferase family CQB05_20545 PF04030 D-arabinono-1,4-lactone oxidase CQB05_20545 PF01565 FAD binding domain CQB05_20550 PF00106 short chain dehydrogenase CQB05_20565 PF07992 Pyridine nucleotide-disulphide oxidoreductase CQB05_20565 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster CQB05_20580 PF02195 ParB-like nuclease domain CQB05_20580 PF17762 HTH domain found in ParB protein CQB05_20590 PF13614 AAA domain CQB05_20595 PF01810 LysE type translocator CQB05_20600 PF02527 rRNA small subunit methyltransferase G CQB05_20605 PF13932 GidA associated domain CQB05_20605 PF01134 Glucose inhibited division protein A CQB05_20610 PF03358 NADPH-dependent FMN reductase CQB05_20615 PF03692 Putative zinc- or iron-chelating domain CQB05_20620 PF02798 Glutathione S-transferase, N-terminal domain CQB05_20620 PF00043 Glutathione S-transferase, C-terminal domain CQB05_20625 PF00528 Binding-protein-dependent transport system inner membrane component CQB05_20630 PF00005 ABC transporter CQB05_20650 PF00512 His Kinase A (phospho-acceptor) domain CQB05_20650 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CQB05_20655 PF00486 Transcriptional regulatory protein, C terminal CQB05_20655 PF00072 Response regulator receiver domain CQB05_20665 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion CQB05_20665 PF00529 HlyD membrane-fusion protein of T1SS CQB05_20670 PF00873 AcrB/AcrD/AcrF family CQB05_20685 PF00672 HAMP domain CQB05_20685 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CQB05_20685 PF02203 Tar ligand binding domain homologue CQB05_20690 PF00403 Heavy-metal-associated domain CQB05_20700 PF00376 MerR family regulatory protein CQB05_20700 PF09278 MerR, DNA binding CQB05_20705 PF02803 Thiolase, C-terminal domain CQB05_20705 PF00108 Thiolase, N-terminal domain CQB05_20730 PF07670 Nucleoside recognition CQB05_20735 PF04381 Putative exonuclease, RdgC CQB05_20755 PF00793 DAHP synthetase I family CQB05_20760 PF00877 NlpC/P60 family CQB05_20765 PF08502 LeuA allosteric (dimerisation) domain CQB05_20765 PF00682 HMGL-like CQB05_20775 PF00392 Bacterial regulatory proteins, gntR family CQB05_20775 PF00155 Aminotransferase class I and II CQB05_20780 PF11490 DNA polymerase III polC-type N-terminus II CQB05_20780 PF14480 DNA polymerase III polC-type N-terminus I CQB05_20780 PF14579 Helix-hairpin-helix motif CQB05_20780 PF07733 Bacterial DNA polymerase III alpha NTPase domain CQB05_20780 PF00929 Exonuclease CQB05_20780 PF02811 PHP domain CQB05_20780 PF17657 Bacterial DNA polymerase III alpha subunit finger domain CQB05_20795 PF13307 Helicase C-terminal domain CQB05_20795 PF06733 DEAD_2 CQB05_20815 PF02566 OsmC-like protein CQB05_20845 PF00986 DNA gyrase B subunit, carboxyl terminus CQB05_20845 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CQB05_20845 PF01751 Toprim domain CQB05_20845 PF00204 DNA gyrase B CQB05_20845 PF18053 DNA gyrase B subunit insert domain CQB05_20850 PF02767 DNA polymerase III beta subunit, central domain CQB05_20850 PF02768 DNA polymerase III beta subunit, C-terminal domain CQB05_20850 PF00712 DNA polymerase III beta subunit, N-terminal domain CQB05_20855 PF11638 DnaA N-terminal domain CQB05_20855 PF08299 Bacterial dnaA protein helix-turn-helix CQB05_20855 PF00308 Bacterial dnaA protein CQB05_20860 PF00468 Ribosomal protein L34 CQB05_20865 PF00825 Ribonuclease P CQB05_20870 PF01809 Putative membrane protein insertion efficiency factor CQB05_20875 PF02096 60Kd inner membrane protein CQB05_20875 PF14849 YidC periplasmic domain CQB05_20885 PF12631 MnmE helical domain CQB05_20885 PF10396 GTP-binding protein TrmE N-terminus CQB05_20885 PF01926 50S ribosome-binding GTPase CQB05_20900 PF00667 FAD binding domain CQB05_20900 PF00258 Flavodoxin CQB05_20900 PF00175 Oxidoreductase NAD-binding domain CQB05_20905 PF00156 Phosphoribosyl transferase domain CQB05_20910 PF00999 Sodium/hydrogen exchanger family CQB05_20910 PF02254 TrkA-N domain CQB05_20910 PF02080 TrkA-C domain CQB05_20915 PF01380 SIS domain CQB05_20915 PF00571 CBS domain CQB05_20930 PF00106 short chain dehydrogenase CQB05_20935 PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) CQB05_20940 PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) CQB05_20945 PF01169 Uncharacterized protein family UPF0016 CQB05_20950 PF00561 alpha/beta hydrolase fold CQB05_20960 PF00990 Diguanylate cyclase, GGDEF domain CQB05_20960 PF00072 Response regulator receiver domain CQB05_20965 PF05985 Ethanolamine ammonia-lyase light chain (EutC) CQB05_20970 PF06751 Ethanolamine ammonia lyase large subunit (EutB) CQB05_20975 PF00324 Amino acid permease CQB05_20980 PF12833 Helix-turn-helix domain CQB05_20990 PF07690 Major Facilitator Superfamily CQB05_20995 PF02463 RecF/RecN/SMC N terminal domain CQB05_20995 PF06470 SMC proteins Flexible Hinge Domain CQB05_21010 PF04452 RNA methyltransferase CQB05_21015 PF01636 Phosphotransferase enzyme family CQB05_21020 PF04453 LPS transport system D CQB05_21025 PF09312 SurA N-terminal domain CQB05_21025 PF00639 PPIC-type PPIASE domain CQB05_21030 PF00398 Ribosomal RNA adenine dimethylase CQB05_21040 PF00545 ribonuclease CQB05_21045 PF03949 Malic enzyme, NAD binding domain CQB05_21045 PF01515 Phosphate acetyl/butaryl transferase CQB05_21045 PF00390 Malic enzyme, N-terminal domain CQB05_21060 PF07364 Metallopeptidase family M81 CQB05_21060 PF07171 MlrC C-terminus CQB05_21065 PF07687 Peptidase dimerisation domain CQB05_21065 PF01546 Peptidase family M20/M25/M40 CQB05_21070 PF00005 ABC transporter CQB05_21075 PF00005 ABC transporter CQB05_21075 PF12399 Branched-chain amino acid ATP-binding cassette transporter CQB05_21080 PF11862 Domain of unknown function (DUF3382) CQB05_21080 PF02653 Branched-chain amino acid transport system / permease component CQB05_21095 PF07729 FCD domain CQB05_21095 PF00392 Bacterial regulatory proteins, gntR family CQB05_21100 PF00990 Diguanylate cyclase, GGDEF domain CQB05_21100 PF00072 Response regulator receiver domain CQB05_21110 PF00171 Aldehyde dehydrogenase family CQB05_21120 PF00202 Aminotransferase class-III CQB05_21125 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CQB05_21125 PF03466 LysR substrate binding domain CQB05_21155 PF08546 Ketopantoate reductase PanE/ApbA C terminal CQB05_21155 PF02558 Ketopantoate reductase PanE/ApbA CQB05_21180 PF00512 His Kinase A (phospho-acceptor) domain CQB05_21180 PF00072 Response regulator receiver domain CQB05_21180 PF13188 PAS domain CQB05_21180 PF08448 PAS fold CQB05_21180 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CQB05_21185 PF00677 Lumazine binding domain CQB05_21190 PF08448 PAS fold CQB05_21190 PF00990 Diguanylate cyclase, GGDEF domain CQB05_21215 PF00293 NUDIX domain CQB05_21225 PF02652 L-lactate permease CQB05_21240 PF00990 Diguanylate cyclase, GGDEF domain CQB05_21240 PF13185 GAF domain CQB05_21240 PF00563 EAL domain CQB05_21245 PF00753 Metallo-beta-lactamase superfamily CQB05_21255 PF04143 Sulphur transport CQB05_21275 PF00436 Single-strand binding protein family CQB05_21285 PF07690 Major Facilitator Superfamily CQB05_21325 PF02203 Tar ligand binding domain homologue CQB05_21325 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CQB05_21325 PF00672 HAMP domain CQB05_21330 PF00892 EamA-like transporter family CQB05_21335 PF00893 Small Multidrug Resistance protein CQB05_21345 PF03401 Tripartite tricarboxylate transporter family receptor CQB05_21355 PF01757 Acyltransferase family CQB05_21360 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family CQB05_21365 PF00892 EamA-like transporter family CQB05_21375 PF00162 Phosphoglycerate kinase CQB05_21390 PF02911 Formyl transferase, C-terminal domain CQB05_21390 PF00551 Formyl transferase CQB05_21400 PF01327 Polypeptide deformylase CQB05_21410 PF02481 DNA recombination-mediator protein A CQB05_21410 PF17782 DprA winged helix domain CQB05_21415 PF01118 Semialdehyde dehydrogenase, NAD binding domain CQB05_21420 PF00549 CoA-ligase CQB05_21420 PF08442 ATP-grasp domain CQB05_21425 PF00549 CoA-ligase CQB05_21425 PF02629 CoA binding domain CQB05_21430 PF03741 Integral membrane protein TerC family CQB05_21440 PF12773 Double zinc ribbon CQB05_21440 PF00498 FHA domain CQB05_21445 PF00114 Pilin (bacterial filament) CQB05_21445 PF07963 Prokaryotic N-terminal methylation motif CQB05_21450 PF15864 Protein glycosylation ligase CQB05_21450 PF04932 O-Antigen ligase CQB05_21450 PF11846 Virulence factor membrane-bound polymerase, C-terminal CQB05_21455 PF01967 MoaC family CQB05_21460 PF01435 Peptidase family M48 CQB05_21460 PF13181 Tetratricopeptide repeat CQB05_21465 PF04020 Mycobacterial 4 TMS phage holin, superfamily IV CQB05_21475 PF03741 Integral membrane protein TerC family CQB05_21490 PF07152 YaeQ protein CQB05_21495 PF00206 Lyase CQB05_21495 PF08328 Adenylosuccinate lyase C-terminal CQB05_21500 PF13417 Glutathione S-transferase, N-terminal domain CQB05_21500 PF00043 Glutathione S-transferase, C-terminal domain CQB05_21505 PF00255 Glutathione peroxidase CQB05_21510 PF01966 HD domain CQB05_21510 PF11871 Domain of unknown function (DUF3391) CQB05_21520 PF00873 AcrB/AcrD/AcrF family CQB05_21525 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion CQB05_21530 PF02321 Outer membrane efflux protein CQB05_21535 PF00440 Bacterial regulatory proteins, tetR family CQB05_21535 PF08361 MAATS-type transcriptional repressor, C-terminal region CQB05_21550 PF00975 Thioesterase domain CQB05_21550 PF00550 Phosphopantetheine attachment site CQB05_21550 PF00668 Condensation domain CQB05_21550 PF00501 AMP-binding enzyme CQB05_21550 PF13193 AMP-binding enzyme C-terminal domain CQB05_21555 PF08335 GlnD PII-uridylyltransferase CQB05_21555 PF03710 Glutamate-ammonia ligase adenylyltransferase CQB05_21565 PF00795 Carbon-nitrogen hydrolase CQB05_21570 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CQB05_21570 PF00989 PAS fold CQB05_21570 PF00512 His Kinase A (phospho-acceptor) domain CQB05_21575 PF00072 Response regulator receiver domain CQB05_21575 PF00196 Bacterial regulatory proteins, luxR family CQB05_21580 PF00691 OmpA family CQB05_21580 PF04972 BON domain CQB05_21585 PF03562 MltA specific insert domain CQB05_21585 PF06725 3D domain CQB05_21605 PF05977 Transmembrane secretion effector CQB05_21615 PF01037 Lrp/AsnC ligand binding domain CQB05_21625 PF02699 Preprotein translocase subunit CQB05_21630 PF02355 Protein export membrane protein CQB05_21630 PF07549 SecD/SecF GG Motif CQB05_21630 PF13721 SecD export protein N-terminal TM region CQB05_21635 PF02355 Protein export membrane protein CQB05_21635 PF07549 SecD/SecF GG Motif CQB05_21645 PF02631 RecX family CQB05_21650 PF00154 recA bacterial DNA recombination protein CQB05_21660 PF00072 Response regulator receiver domain CQB05_21660 PF00486 Transcriptional regulatory protein, C terminal CQB05_21680 PF03401 Tripartite tricarboxylate transporter family receptor CQB05_21705 PF03099 Biotin/lipoate A/B protein ligase family CQB05_21705 PF08279 HTH domain CQB05_21705 PF02237 Biotin protein ligase C terminal domain CQB05_21715 PF01131 DNA topoisomerase CQB05_21715 PF01751 Toprim domain CQB05_21740 PF06271 RDD family CQB05_21760 PF13361 UvrD-like helicase C-terminal domain CQB05_21760 PF00580 UvrD/REP helicase N-terminal domain CQB05_21790 PF06983 3-demethylubiquinone-9 3-methyltransferase CQB05_21805 PF00106 short chain dehydrogenase CQB05_21810 PF00884 Sulfatase CQB05_21835 PF05726 Pirin C-terminal cupin domain CQB05_21835 PF02678 Pirin CQB05_21875 PF07722 Peptidase C26 CQB05_21900 PF00691 OmpA family CQB05_21900 PF05736 OprF membrane domain CQB05_21920 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain CQB05_21920 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain CQB05_21940 PF02780 Transketolase, C-terminal domain CQB05_21940 PF00456 Transketolase, thiamine diphosphate binding domain CQB05_21940 PF02779 Transketolase, pyrimidine binding domain CQB05_21950 PF00483 Nucleotidyl transferase CQB05_21955 PF05195 Aminopeptidase P, N-terminal domain CQB05_21955 PF00557 Metallopeptidase family M24 CQB05_21960 PF00224 Pyruvate kinase, barrel domain CQB05_21960 PF02887 Pyruvate kinase, alpha/beta domain CQB05_21975 PF00072 Response regulator receiver domain CQB05_21975 PF00486 Transcriptional regulatory protein, C terminal CQB05_21980 PF00512 His Kinase A (phospho-acceptor) domain CQB05_21980 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CQB05_21985 PF01116 Fructose-bisphosphate aldolase class-II CQB05_21995 PF00501 AMP-binding enzyme CQB05_21995 PF13193 AMP-binding enzyme C-terminal domain CQB05_22000 PF01048 Phosphorylase superfamily CQB05_22005 PF01544 CorA-like Mg2+ transporter protein CQB05_22020 PF00814 Glycoprotease family CQB05_22045 PF01300 Telomere recombination CQB05_22045 PF03481 Putative GTP-binding controlling metal-binding CQB05_22050 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain CQB05_22050 PF02222 ATP-grasp domain CQB05_22055 PF00731 AIR carboxylase CQB05_22070 PF01259 SAICAR synthetase CQB05_22075 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein CQB05_22080 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 CQB05_22085 PF07475 HPr Serine kinase C-terminal domain CQB05_22085 PF02603 HPr Serine kinase N terminus CQB05_22090 PF01475 Ferric uptake regulator family CQB05_22095 PF04355 SmpA / OmlA family CQB05_22105 PF01618 MotA/TolQ/ExbB proton channel family CQB05_22110 PF02472 Biopolymer transport protein ExbD/TolR CQB05_22115 PF00563 EAL domain CQB05_22115 PF13188 PAS domain CQB05_22115 PF03707 Bacterial signalling protein N terminal repeat CQB05_22115 PF00990 Diguanylate cyclase, GGDEF domain CQB05_22125 PF00133 tRNA synthetases class I (I, L, M and V) CQB05_22125 PF13603 Leucyl-tRNA synthetase, Domain 2 CQB05_22125 PF09334 tRNA synthetases class I (M) CQB05_22125 PF08264 Anticodon-binding domain of tRNA CQB05_22145 PF00171 Aldehyde dehydrogenase family CQB05_22150 PF02080 TrkA-C domain CQB05_22150 PF02254 TrkA-N domain CQB05_22155 PF02386 Cation transport protein CQB05_22165 PF02705 K+ potassium transporter CQB05_22170 PF03594 Benzoate membrane transport protein CQB05_22175 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain CQB05_22175 PF02951 Prokaryotic glutathione synthetase, N-terminal domain CQB05_22220 PF03143 Elongation factor Tu C-terminal domain CQB05_22220 PF03144 Elongation factor Tu domain 2 CQB05_22220 PF00009 Elongation factor Tu GTP binding domain CQB05_22230 PF00584 SecE/Sec61-gamma subunits of protein translocation complex CQB05_22235 PF00467 KOW motif CQB05_22235 PF02357 Transcription termination factor nusG CQB05_22240 PF00298 Ribosomal protein L11, RNA binding domain CQB05_22240 PF03946 Ribosomal protein L11, N-terminal domain CQB05_22245 PF00687 Ribosomal protein L1p/L10e family CQB05_22250 PF00466 Ribosomal protein L10 CQB05_22255 PF00542 Ribosomal protein L7/L12 C-terminal domain CQB05_22255 PF16320 Ribosomal protein L7/L12 dimerisation domain CQB05_22260 PF04565 RNA polymerase Rpb2, domain 3 CQB05_22260 PF10385 RNA polymerase beta subunit external 1 domain CQB05_22260 PF04561 RNA polymerase Rpb2, domain 2 CQB05_22260 PF00562 RNA polymerase Rpb2, domain 6 CQB05_22260 PF04560 RNA polymerase Rpb2, domain 7 CQB05_22260 PF04563 RNA polymerase beta subunit CQB05_22265 PF00623 RNA polymerase Rpb1, domain 2 CQB05_22265 PF04997 RNA polymerase Rpb1, domain 1 CQB05_22265 PF04998 RNA polymerase Rpb1, domain 5 CQB05_22265 PF05000 RNA polymerase Rpb1, domain 4 CQB05_22265 PF04983 RNA polymerase Rpb1, domain 3 CQB05_22275 PF01189 16S rRNA methyltransferase RsmB/F CQB05_22275 PF01029 NusB family CQB05_22285 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CQB05_22285 PF00672 HAMP domain CQB05_22285 PF00989 PAS fold CQB05_22285 PF00512 His Kinase A (phospho-acceptor) domain CQB05_22290 PF00158 Sigma-54 interaction domain CQB05_22290 PF00072 Response regulator receiver domain CQB05_22290 PF02954 Bacterial regulatory protein, Fis family CQB05_22305 PF00080 Copper/zinc superoxide dismutase (SODC) CQB05_22310 PF07995 Glucose / Sorbosone dehydrogenase CQB05_22315 PF13391 HNH endonuclease CQB05_22320 PF07804 HipA-like C-terminal domain CQB05_22320 PF13657 HipA N-terminal domain CQB05_22330 PF04244 Deoxyribodipyrimidine photo-lyase-related protein CQB05_22345 PF00005 ABC transporter CQB05_22350 PF00528 Binding-protein-dependent transport system inner membrane component CQB05_22365 PF13350 Tyrosine phosphatase family CQB05_22385 PF01266 FAD dependent oxidoreductase CQB05_22395 PF13454 FAD-NAD(P)-binding CQB05_22405 PF03401 Tripartite tricarboxylate transporter family receptor CQB05_22445 PF02203 Tar ligand binding domain homologue CQB05_22445 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CQB05_22445 PF00672 HAMP domain CQB05_22450 PF03401 Tripartite tricarboxylate transporter family receptor CQB05_22455 PF00291 Pyridoxal-phosphate dependent enzyme CQB05_22460 PF01037 Lrp/AsnC ligand binding domain CQB05_22515 PF01702 Queuine tRNA-ribosyltransferase CQB05_22520 PF00582 Universal stress protein family CQB05_22530 PF02253 Phospholipase A1 CQB05_22535 PF00580 UvrD/REP helicase N-terminal domain CQB05_22535 PF13361 UvrD-like helicase C-terminal domain CQB05_22555 PF18319 PriA DNA helicase Cys-rich region (CRR) domain CQB05_22555 PF18074 Primosomal protein N C-terminal domain CQB05_22555 PF00271 Helicase conserved C-terminal domain CQB05_22555 PF17764 3′ DNA-binding domain (3′BD) CQB05_22555 PF00270 DEAD/DEAH box helicase CQB05_22560 PF01208 Uroporphyrinogen decarboxylase (URO-D) CQB05_22570 PF03401 Tripartite tricarboxylate transporter family receptor CQB05_22575 PF16385 Domain of unknown function CQB05_22575 PF00884 Sulfatase CQB05_22595 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CQB05_22595 PF03466 LysR substrate binding domain CQB05_22600 PF03741 Integral membrane protein TerC family CQB05_22630 PF01411 tRNA synthetases class II (A) CQB05_22630 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain CQB05_22630 PF02272 DHHA1 domain CQB05_22635 PF00107 Zinc-binding dehydrogenase CQB05_22635 PF08240 Alcohol dehydrogenase GroES-like domain CQB05_22640 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CQB05_22640 PF03466 LysR substrate binding domain CQB05_22645 PF01970 Tripartite tricarboxylate transporter TctA family CQB05_22675 PF00672 HAMP domain CQB05_22675 PF02203 Tar ligand binding domain homologue CQB05_22675 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CQB05_22700 PF00291 Pyridoxal-phosphate dependent enzyme CQB05_22710 PF02567 Phenazine biosynthesis-like protein CQB05_22715 PF13417 Glutathione S-transferase, N-terminal domain CQB05_22715 PF00043 Glutathione S-transferase, C-terminal domain CQB05_22720 PF00155 Aminotransferase class I and II CQB05_22725 PF00892 EamA-like transporter family CQB05_22730 PF01810 LysE type translocator CQB05_22735 PF00155 Aminotransferase class I and II CQB05_22735 PF00392 Bacterial regulatory proteins, gntR family CQB05_22750 PF00669 Bacterial flagellin N-terminal helical region CQB05_22750 PF00700 Bacterial flagellin C-terminal helical region CQB05_22760 PF10135 Rod binding protein CQB05_22760 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase CQB05_22765 PF02119 Flagellar P-ring protein CQB05_22775 PF02107 Flagellar L-ring protein CQB05_22780 PF06429 Flagellar basal body rod FlgEFG protein C-terminal CQB05_22780 PF00460 Flagella basal body rod protein CQB05_22785 PF00460 Flagella basal body rod protein CQB05_22785 PF06429 Flagellar basal body rod FlgEFG protein C-terminal CQB05_22790 PF00460 Flagella basal body rod protein CQB05_22790 PF07559 Flagellar basal body protein FlaE CQB05_22790 PF06429 Flagellar basal body rod FlgEFG protein C-terminal CQB05_22795 PF03963 Flagellar hook capping protein - N-terminal region CQB05_22795 PF13861 FlgD Tudor-like domain CQB05_22795 PF13860 FlgD Ig-like domain CQB05_22800 PF06429 Flagellar basal body rod FlgEFG protein C-terminal CQB05_22800 PF00460 Flagella basal body rod protein CQB05_22805 PF00460 Flagella basal body rod protein CQB05_22825 PF04542 Sigma-70 region 2 CQB05_22825 PF04545 Sigma-70, region 4 CQB05_22825 PF04539 Sigma-70 region 3 CQB05_22835 PF00448 SRP54-type protein, GTPase domain CQB05_22840 PF00771 FHIPEP family CQB05_22845 PF01312 FlhB HrpN YscU SpaS Family CQB05_22850 PF04344 Chemotaxis phosphatase, CheZ CQB05_22855 PF00072 Response regulator receiver domain CQB05_22860 PF13677 Membrane MotB of proton-channel complex MotA/MotB CQB05_22860 PF00691 OmpA family CQB05_22865 PF01618 MotA/TolQ/ExbB proton channel family CQB05_22870 PF00535 Glycosyl transferase family 2 CQB05_22875 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family CQB05_22880 PF01266 FAD dependent oxidoreductase CQB05_22890 PF13649 Methyltransferase domain CQB05_22895 PF08889 WbqC-like protein family CQB05_22900 PF00700 Bacterial flagellin C-terminal helical region CQB05_22900 PF00669 Bacterial flagellin N-terminal helical region CQB05_22905 PF00700 Bacterial flagellin C-terminal helical region CQB05_22905 PF00669 Bacterial flagellin N-terminal helical region CQB05_22910 PF07196 Flagellin hook IN motif CQB05_22910 PF07195 Flagellar hook-associated protein 2 C-terminus CQB05_22910 PF02465 Flagellar hook-associated protein 2 N-terminus CQB05_22915 PF02561 Flagellar protein FliS CQB05_22930 PF08345 Flagellar M-ring protein C-terminal CQB05_22930 PF01514 Secretory protein of YscJ/FliF family CQB05_22935 PF14841 FliG middle domain CQB05_22935 PF01706 FliG C-terminal domain CQB05_22935 PF14842 FliG N-terminal domain CQB05_22945 PF18269 T3SS EscN ATPase C-terminal domain CQB05_22945 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain CQB05_22960 PF03748 Flagellar basal body-associated protein FliL CQB05_22965 PF02154 Flagellar motor switch protein FliM CQB05_22965 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term CQB05_22970 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term CQB05_22970 PF16973 Flagellar motor switch protein FliN N-terminal CQB05_22980 PF00813 FliP family CQB05_22985 PF01313 Bacterial export proteins, family 3 CQB05_22990 PF01311 Bacterial export proteins, family 1 CQB05_22995 PF00196 Bacterial regulatory proteins, luxR family CQB05_22995 PF00072 Response regulator receiver domain CQB05_23000 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CQB05_23000 PF07730 Histidine kinase CQB05_23000 PF05231 MASE1 CQB05_23010 PF00072 Response regulator receiver domain CQB05_23015 PF09078 CheY binding CQB05_23015 PF01627 Hpt domain CQB05_23015 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CQB05_23015 PF02895 Signal transducing histidine kinase, homodimeric domain CQB05_23015 PF01584 CheW-like domain CQB05_23020 PF01584 CheW-like domain CQB05_23025 PF03705 CheR methyltransferase, all-alpha domain CQB05_23025 PF01739 CheR methyltransferase, SAM binding domain CQB05_23030 PF03975 CheD chemotactic sensory transduction CQB05_23035 PF00072 Response regulator receiver domain CQB05_23035 PF01339 CheB methylesterase CQB05_23070 PF13411 MerR HTH family regulatory protein CQB05_23075 PF02771 Acyl-CoA dehydrogenase, N-terminal domain CQB05_23075 PF02770 Acyl-CoA dehydrogenase, middle domain CQB05_23075 PF00441 Acyl-CoA dehydrogenase, C-terminal domain CQB05_23080 PF00484 Carbonic anhydrase CQB05_23085 PF06315 Isocitrate dehydrogenase kinase/phosphatase (AceK) CQB05_23090 PF02803 Thiolase, C-terminal domain CQB05_23090 PF00108 Thiolase, N-terminal domain CQB05_23105 PF02770 Acyl-CoA dehydrogenase, middle domain CQB05_23105 PF02771 Acyl-CoA dehydrogenase, N-terminal domain CQB05_23105 PF00441 Acyl-CoA dehydrogenase, C-terminal domain CQB05_23110 PF03575 Peptidase family S51 CQB05_23125 PF01627 Hpt domain CQB05_23125 PF00512 His Kinase A (phospho-acceptor) domain CQB05_23125 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CQB05_23125 PF00072 Response regulator receiver domain CQB05_23130 PF13419 Haloacid dehalogenase-like hydrolase CQB05_23150 PF00501 AMP-binding enzyme CQB05_23150 PF13193 AMP-binding enzyme C-terminal domain CQB05_23155 PF01039 Carboxyl transferase domain CQB05_23160 PF00378 Enoyl-CoA hydratase/isomerase CQB05_23175 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain CQB05_23180 PF00682 HMGL-like CQB05_23195 PF01323 DSBA-like thioredoxin domain CQB05_23200 PF08946 Osmosensory transporter coiled coil CQB05_23200 PF00083 Sugar (and other) transporter CQB05_23205 PF13609 Gram-negative porin CQB05_23210 PF13609 Gram-negative porin CQB05_23220 PF13458 Periplasmic binding protein CQB05_23260 PF00202 Aminotransferase class-III CQB05_23275 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family CQB05_23285 PF00892 EamA-like transporter family CQB05_23305 PF02687 FtsX-like permease family CQB05_23305 PF00005 ABC transporter CQB05_23305 PF12704 MacB-like periplasmic core domain CQB05_23315 PF02321 Outer membrane efflux protein CQB05_23320 PF00486 Transcriptional regulatory protein, C terminal CQB05_23320 PF00072 Response regulator receiver domain CQB05_23325 PF00672 HAMP domain CQB05_23325 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CQB05_23325 PF00512 His Kinase A (phospho-acceptor) domain CQB05_23330 PF01979 Amidohydrolase family CQB05_23345 PF01435 Peptidase family M48 CQB05_23350 PF03466 LysR substrate binding domain CQB05_23350 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CQB05_23355 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain CQB05_23355 PF00378 Enoyl-CoA hydratase/isomerase CQB05_23355 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain CQB05_23360 PF02771 Acyl-CoA dehydrogenase, N-terminal domain CQB05_23360 PF02770 Acyl-CoA dehydrogenase, middle domain CQB05_23360 PF00441 Acyl-CoA dehydrogenase, C-terminal domain CQB05_23365 PF02770 Acyl-CoA dehydrogenase, middle domain CQB05_23365 PF02771 Acyl-CoA dehydrogenase, N-terminal domain CQB05_23365 PF00441 Acyl-CoA dehydrogenase, C-terminal domain CQB05_23370 PF00378 Enoyl-CoA hydratase/isomerase CQB05_23375 PF02515 CoA-transferase family III CQB05_23380 PF03401 Tripartite tricarboxylate transporter family receptor CQB05_23390 PF01012 Electron transfer flavoprotein domain CQB05_23395 PF01012 Electron transfer flavoprotein domain CQB05_23395 PF00766 Electron transfer flavoprotein FAD-binding domain CQB05_23400 PF00596 Class II Aldolase and Adducin N-terminal domain CQB05_23405 PF03401 Tripartite tricarboxylate transporter family receptor CQB05_23410 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CQB05_23410 PF00672 HAMP domain CQB05_23410 PF02203 Tar ligand binding domain homologue CQB05_23425 PF03706 Lysylphosphatidylglycerol synthase TM region CQB05_23430 PF13091 PLD-like domain CQB05_23435 PF03372 Endonuclease/Exonuclease/phosphatase family CQB05_23440 PF00291 Pyridoxal-phosphate dependent enzyme CQB05_23450 PF13545 Crp-like helix-turn-helix domain CQB05_23450 PF00027 Cyclic nucleotide-binding domain CQB05_23455 PF00672 HAMP domain CQB05_23455 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CQB05_23455 PF02203 Tar ligand binding domain homologue CQB05_23465 PF00563 EAL domain CQB05_23465 PF03707 Bacterial signalling protein N terminal repeat CQB05_23465 PF00990 Diguanylate cyclase, GGDEF domain CQB05_23470 PF00849 RNA pseudouridylate synthase CQB05_23470 PF01479 S4 domain CQB05_23485 PF00183 Hsp90 protein CQB05_23485 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CQB05_23520 PF00512 His Kinase A (phospho-acceptor) domain CQB05_23520 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CQB05_23520 PF00672 HAMP domain CQB05_23520 PF17149 Periplasmic sensor domain found in signal transduction proteins CQB05_23520 PF00072 Response regulator receiver domain CQB05_23520 PF01627 Hpt domain CQB05_23525 PF01547 Bacterial extracellular solute-binding protein CQB05_23535 PF00072 Response regulator receiver domain CQB05_23535 PF00486 Transcriptional regulatory protein, C terminal CQB05_23540 PF01636 Phosphotransferase enzyme family CQB05_23545 PF00069 Protein kinase domain CQB05_23545 PF03793 PASTA domain CQB05_23555 PF02566 OsmC-like protein CQB05_23560 PF01047 MarR family CQB05_23565 PF03328 HpcH/HpaI aldolase/citrate lyase family CQB05_23570 PF01557 Fumarylacetoacetate (FAA) hydrolase family CQB05_23575 PF01557 Fumarylacetoacetate (FAA) hydrolase family CQB05_23580 PF04909 Amidohydrolase CQB05_23585 PF01042 Endoribonuclease L-PSP CQB05_23590 PF03401 Tripartite tricarboxylate transporter family receptor CQB05_23600 PF01613 Flavin reductase like domain CQB05_23605 PF01614 Bacterial transcriptional regulator CQB05_23605 PF09339 IclR helix-turn-helix domain CQB05_23610 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain CQB05_23610 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain CQB05_23615 PF01061 ABC-2 type transporter CQB05_23620 PF00005 ABC transporter CQB05_23625 PF02222 ATP-grasp domain CQB05_23630 PF00082 Subtilase family CQB05_23650 PF00356 Bacterial regulatory proteins, lacI family CQB05_23655 PF00381 PTS HPr component phosphorylation site CQB05_23655 PF02896 PEP-utilising enzyme, TIM barrel domain CQB05_23655 PF00391 PEP-utilising enzyme, mobile domain CQB05_23655 PF05524 PEP-utilising enzyme, N-terminal CQB05_23655 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 CQB05_23665 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit CQB05_23680 PF05230 MASE2 domain CQB05_23680 PF00990 Diguanylate cyclase, GGDEF domain CQB05_23685 PF10423 Bacterial AMP nucleoside phosphorylase N-terminus CQB05_23685 PF01048 Phosphorylase superfamily CQB05_23690 PF03880 DbpA RNA binding domain CQB05_23690 PF00270 DEAD/DEAH box helicase CQB05_23690 PF00271 Helicase conserved C-terminal domain CQB05_23695 PF16916 Dimerisation domain of Zinc Transporter CQB05_23695 PF01545 Cation efflux family CQB05_23700 PF02580 D-Tyr-tRNA(Tyr) deacylase CQB05_23705 PF02130 Uncharacterized protein family UPF0054 CQB05_23710 PF02562 PhoH-like protein CQB05_23715 PF01330 RuvA N terminal domain CQB05_23715 PF07499 RuvA, C-terminal domain CQB05_23730 PF05491 RuvB C-terminal winged helix domain CQB05_23730 PF05496 Holliday junction DNA helicase RuvB P-loop domain CQB05_23730 PF17864 RuvB AAA lid domain CQB05_23745 PF01168 Alanine racemase, N-terminal domain CQB05_23745 PF14031 Putative serine dehydratase domain CQB05_23750 PF00300 Histidine phosphatase superfamily (branch 1) CQB05_23760 PF01171 PP-loop family CQB05_23765 PF17200 Single Cache domain 2 CQB05_23765 PF07730 Histidine kinase CQB05_23770 PF00072 Response regulator receiver domain CQB05_23770 PF00196 Bacterial regulatory proteins, luxR family CQB05_23775 PF13722 5TM C-terminal transporter carbon starvation CstA CQB05_23775 PF02554 Carbon starvation protein CstA CQB05_23780 PF04328 Selenoprotein, putative CQB05_23805 PF00497 Bacterial extracellular solute-binding proteins, family 3 CQB05_23810 PF00282 Pyridoxal-dependent decarboxylase conserved domain CQB05_23815 PF00202 Aminotransferase class-III CQB05_23820 PF13434 L-lysine 6-monooxygenase (NADPH-requiring) CQB05_23825 PF00583 Acetyltransferase (GNAT) family CQB05_23835 PF00501 AMP-binding enzyme CQB05_23835 PF13193 AMP-binding enzyme C-terminal domain CQB05_23835 PF00550 Phosphopantetheine attachment site CQB05_23835 PF00668 Condensation domain CQB05_23860 PF00982 Glycosyltransferase family 20 CQB05_23865 PF00723 Glycosyl hydrolases family 15 CQB05_23875 PF02358 Trehalose-phosphatase CQB05_23880 PF00085 Thioredoxin CQB05_23885 PF01743 Poly A polymerase head domain CQB05_23885 PF12627 Probable RNA and SrmB- binding site of polymerase A CQB05_23885 PF01966 HD domain CQB05_23895 PF00043 Glutathione S-transferase, C-terminal domain CQB05_23895 PF13417 Glutathione S-transferase, N-terminal domain CQB05_23900 PF00990 Diguanylate cyclase, GGDEF domain CQB05_23900 PF00563 EAL domain CQB05_23900 PF03707 Bacterial signalling protein N terminal repeat CQB05_23905 PF01812 5-formyltetrahydrofolate cyclo-ligase family CQB05_23910 PF01464 Transglycosylase SLT domain CQB05_23910 PF01551 Peptidase family M23 CQB05_23910 PF10145 Phage-related minor tail protein CQB05_23925 PF05025 RbsD / FucU transport protein family CQB05_23930 PF00294 pfkB family carbohydrate kinase CQB05_23935 PF00356 Bacterial regulatory proteins, lacI family CQB05_23940 PF02653 Branched-chain amino acid transport system / permease component CQB05_23945 PF00005 ABC transporter CQB05_23950 PF13407 Periplasmic binding protein domain CQB05_23955 PF00501 AMP-binding enzyme CQB05_23955 PF13193 AMP-binding enzyme C-terminal domain CQB05_23965 PF00351 Biopterin-dependent aromatic amino acid hydroxylase CQB05_23970 PF03401 Tripartite tricarboxylate transporter family receptor CQB05_23975 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily CQB05_23985 PF00561 alpha/beta hydrolase fold CQB05_23990 PF01037 Lrp/AsnC ligand binding domain CQB05_24000 PF03471 Transporter associated domain CQB05_24000 PF00571 CBS domain CQB05_24005 PF00795 Carbon-nitrogen hydrolase CQB05_24010 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CQB05_24010 PF03466 LysR substrate binding domain CQB05_24015 PF00710 Asparaginase, N-terminal CQB05_24015 PF17763 Glutaminase/Asparaginase C-terminal domain CQB05_24020 PF07977 FabA-like domain CQB05_24025 PF02801 Beta-ketoacyl synthase, C-terminal domain CQB05_24025 PF00109 Beta-ketoacyl synthase, N-terminal domain CQB05_24030 PF13442 Cytochrome C oxidase, cbb3-type, subunit III CQB05_24035 PF02091 Glycyl-tRNA synthetase alpha subunit CQB05_24040 PF02092 Glycyl-tRNA synthetase beta subunit CQB05_24040 PF05746 DALR anticodon binding domain CQB05_24055 PF01553 Acyltransferase CQB05_24075 PF04972 BON domain CQB05_24075 PF01476 LysM domain CQB05_24080 PF03309 Type III pantothenate kinase CQB05_24095 PF16363 GDP-mannose 4,6 dehydratase CQB05_24100 PF04321 RmlD substrate binding domain CQB05_24105 PF00483 Nucleotidyl transferase CQB05_24110 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase CQB05_24120 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain CQB05_24120 PF00437 Type II/IV secretion system protein CQB05_24125 PF00482 Type II secretion system (T2SS), protein F CQB05_24130 PF07963 Prokaryotic N-terminal methylation motif CQB05_24130 PF08334 Type II secretion system (T2SS), protein G CQB05_24135 PF12019 Type II transport protein GspH CQB05_24140 PF07963 Prokaryotic N-terminal methylation motif CQB05_24170 PF03958 Bacterial type II/III secretion system short domain CQB05_24170 PF00263 Bacterial type II and III secretion system protein CQB05_24195 PF00005 ABC transporter CQB05_24225 PF00696 Amino acid kinase family CQB05_24230 PF00072 Response regulator receiver domain CQB05_24230 PF00486 Transcriptional regulatory protein, C terminal CQB05_24235 PF00512 His Kinase A (phospho-acceptor) domain CQB05_24235 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CQB05_24240 PF00440 Bacterial regulatory proteins, tetR family