locus-tag	class	description
CQB05_00085	COG1250	3-hydroxyacyl-CoA dehydrogenase
CQB05_00085	COG1024	Enoyl-CoA hydratase
CQB05_00090	COG0183	Belongs to the thiolase family
CQB05_00095	COG2050	protein possibly involved in aromatic compounds catabolism
CQB05_00100	COG1960	acyl-CoA dehydrogenase activity
CQB05_00125	COG2130	NADP-dependent
CQB05_00130	COG2153	protein acetylation
CQB05_00150	COG1840	ABC-type Fe3 transport system, periplasmic component
CQB05_00165	COG1522	sequence-specific DNA binding
CQB05_00180	COG2224	Isocitrate lyase
CQB05_00185	COG0441	Catalyzes the attachment of threonine to tRNA(Thr) in a two-step reaction L-threonine is first activated by ATP to form Thr-AMP and then transferred to the acceptor end of tRNA(Thr)
CQB05_00190	COG0290	IF-3 binds to the 30S ribosomal subunit and shifts the equilibrum between 70S ribosomes and their 50S and 30S subunits in favor of the free subunits, thus enhancing the availability of 30S subunits on which protein synthesis initiation begins
CQB05_00195	COG0291	Belongs to the bacterial ribosomal protein bL35 family
CQB05_00200	COG0292	Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit
CQB05_00205	COG0016	Belongs to the class-II aminoacyl-tRNA synthetase family. Phe-tRNA synthetase alpha subunit type 1 subfamily
CQB05_00215	COG0776	regulation of translation
CQB05_00220	COG0789	Transcriptional regulator
CQB05_00245	COG1132	(ABC) transporter
CQB05_00250	COG1055	Involved in arsenical resistance. Thought to form the channel of an arsenite pump
CQB05_00260	COG1742	UPF0060 membrane protein
CQB05_00270	COG1196	nuclear chromosome segregation
CQB05_00280	COG0272	DNA ligase that catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double-stranded DNA using NAD as a coenzyme and as the energy source for the reaction. It is essential for DNA replication and repair of damaged DNA
CQB05_00285	COG3501	Rhs element vgr protein
CQB05_00295	COG3209	COG3209 Rhs family protein
CQB05_00320	COG0553	Transcription regulator that activates transcription by stimulating RNA polymerase (RNAP) recycling in case of stress conditions such as supercoiled DNA or high salt concentrations. Probably acts by releasing the RNAP, when it is trapped or immobilized on tightly supercoiled DNA. Does not activate transcription on linear DNA. Probably not involved in DNA repair
CQB05_00335	COG0791	NLP P60 protein
CQB05_00340	COG2133	pyrroloquinoline quinone binding
CQB05_00390	COG1670	COG1670 acetyltransferases, including N-acetylases of ribosomal proteins
CQB05_00390	COG0045	succinate-CoA ligase (ADP-forming) activity
CQB05_00390	COG1042	CoA-binding domain protein
CQB05_00410	COG1309	transcriptional regulator
CQB05_00415	COG0225	Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine
CQB05_00425	COG1136	(ABC) transporter
CQB05_00450	COG4206	TonB-dependent receptor
CQB05_00455	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
CQB05_00470	COG0259	pyridoxamine-phosphate oxidase activity
CQB05_00495	COG1609	Transcriptional regulator
CQB05_00500	COG3265	gluconokinase activity
CQB05_00505	COG3090	Trap-type c4-dicarboxylate transport system, small permease component
CQB05_00510	COG1593	TRAP-type C4-dicarboxylate transport system, large permease component
CQB05_00515	COG1638	TRAP-type C4-dicarboxylate transport system periplasmic component
CQB05_00525	COG0800	Aldolase
CQB05_00535	COG0346	lactoylglutathione lyase activity
CQB05_00540	COG1028	Short-chain dehydrogenase reductase Sdr
CQB05_00580	COG0583	DNA-binding transcription factor activity
CQB05_00585	COG0431	NADPH-dependent FMN reductase
CQB05_00595	COG0620	Catalyzes the transfer of a methyl group from 5- methyltetrahydrofolate to homocysteine resulting in methionine formation
CQB05_00650	COG0465	Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins
CQB05_00760	COG4453	Protein conserved in bacteria
CQB05_00800	COG3209	COG3209 Rhs family protein
CQB05_00825	COG3501	Rhs element vgr protein
CQB05_00840	COG0587	DNA-directed DNA polymerase activity
CQB05_00845	COG4974	Belongs to the 'phage' integrase family
CQB05_00850	COG1651	Required for disulfide bond formation in some periplasmic proteins. Acts by transferring its disulfide bond to other proteins and is reduced in the process
CQB05_00865	COG1196	nuclear chromosome segregation
CQB05_00865	COG0741	lytic transglycosylase activity
CQB05_00865	COG0739	heme binding
CQB05_00885	COG2804	Type II secretory pathway, ATPase PulE Tfp pilus assembly pathway, ATPase PilB
CQB05_00900	COG2804	Type II secretory pathway, ATPase PulE Tfp pilus assembly pathway, ATPase PilB
CQB05_00980	COG3012	SEC-C Motif Domain Protein
CQB05_00980	COG3318	Belongs to the UPF0149 family
CQB05_01000	COG1961	COG1961 Site-specific recombinases, DNA invertase Pin homologs
CQB05_01090	COG0553	Transcription regulator that activates transcription by stimulating RNA polymerase (RNAP) recycling in case of stress conditions such as supercoiled DNA or high salt concentrations. Probably acts by releasing the RNAP, when it is trapped or immobilized on tightly supercoiled DNA. Does not activate transcription on linear DNA. Probably not involved in DNA repair
CQB05_01145	COG2894	cell division
CQB05_01160	COG2982	Protein involved in outer membrane biogenesis
CQB05_01165	COG0587	DNA-directed DNA polymerase activity
CQB05_01180	COG0221	Catalyzes the hydrolysis of inorganic pyrophosphate (PPi) forming two phosphate ions
CQB05_01205	COG1012	belongs to the aldehyde dehydrogenase family
CQB05_01230	COG2896	Catalyzes the cyclization of GTP to (8S)-3',8-cyclo-7,8- dihydroguanosine 5'-triphosphate
CQB05_01235	COG0746	molybdenum cofactor guanylyltransferase activity
CQB05_01245	COG0303	'Molybdopterin
CQB05_01260	COG0328	RNA-DNA hybrid ribonuclease activity
CQB05_01265	COG2226	methyltransferase
CQB05_01270	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
CQB05_01275	COG1388	LysM domain
CQB05_01275	COG0741	lytic transglycosylase activity
CQB05_01295	COG0353	May play a role in DNA repair. It seems to be involved in an RecBC-independent recombinational process of DNA repair. It may act with RecF and RecO
CQB05_01300	COG0718	Binds to DNA and alters its conformation. May be involved in regulation of gene expression, nucleoid organization and DNA protection
CQB05_01315	COG0840	transmembrane signaling receptor activity
CQB05_01325	COG2081	HI0933 family
CQB05_01345	COG1158	Facilitates transcription termination by a mechanism that involves Rho binding to the nascent RNA, activation of Rho's RNA-dependent ATPase activity, and release of the mRNA from the DNA template
CQB05_01350	COG0419	ATPase involved in DNA repair
CQB05_01355	COG0420	3'-5' exonuclease activity
CQB05_01360	COG0254	rRNA binding
CQB05_01370	COG0534	Mate efflux family protein
CQB05_01385	COG0704	Plays a role in the regulation of phosphate uptake
CQB05_01390	COG1117	ATPase-coupled phosphate ion transmembrane transporter activity
CQB05_01395	COG0581	inorganic phosphate transmembrane transporter activity
CQB05_01400	COG0573	inorganic phosphate transmembrane transporter activity
CQB05_01405	COG0226	Part of the ABC transporter complex PstSACB involved in phosphate import
CQB05_01410	COG0248	Ppx GppA phosphatase
CQB05_01440	COG1109	Catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate
CQB05_01450	COG0465	Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins
CQB05_01455	COG0293	Specifically methylates the uridine in position 2552 of 23S rRNA at the 2'-O position of the ribose in the fully assembled 50S ribosomal subunit
CQB05_01460	COG1534	Rna-binding protein
CQB05_01475	COG0782	Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus
CQB05_01480	COG0458	carbamoyl-phosphate synthase (glutamine-hydrolyzing) activity
CQB05_01485	COG0505	Belongs to the CarA family
CQB05_01495	COG1113	amino acid transport
CQB05_01525	COG1960	acyl-CoA dehydrogenase activity
CQB05_01540	COG2032	superoxide dismutase activity
CQB05_01545	COG4772	TonB-dependent receptor
CQB05_01560	COG2721	sulfolactate sulfo-lyase activity
CQB05_01575	COG1638	TRAP-type C4-dicarboxylate transport system periplasmic component
CQB05_01585	COG0451	ADP-glyceromanno-heptose 6-epimerase activity
CQB05_01595	COG3181	Tripartite tricarboxylate transporter family receptor
CQB05_01600	COG0329	Catalyzes the condensation of (S)-aspartate-beta- semialdehyde (S)-ASA and pyruvate to 4-hydroxy- tetrahydrodipicolinate (HTPA)
CQB05_01640	COG0789	Transcriptional regulator
CQB05_01645	COG2814	Major facilitator Superfamily
CQB05_01660	COG1942	4-Oxalocrotonate Tautomerase
CQB05_01665	COG0625	glutathione transferase activity
CQB05_01695	COG0605	Destroys radicals which are normally produced within the cells and which are toxic to biological systems
CQB05_01700	COG1570	exodeoxyribonuclease VII activity
CQB05_01705	COG0811	peptide transport
CQB05_01710	COG0848	biopolymer transport protein
CQB05_01715	COG1663	tetraacyldisaccharide 4'-kinase activity
CQB05_01720	COG2835	tetraacyldisaccharide 4'-kinase activity
CQB05_01725	COG1212	Activates KDO (a required 8-carbon sugar) for incorporation into bacterial lipopolysaccharide in Gram-negative bacteria
CQB05_01730	COG0563	adenylate kinase activity
CQB05_01740	COG0252	asparaginase activity
CQB05_01745	COG1974	Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair
CQB05_01755	COG1643	Atp-dependent helicase
CQB05_01765	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
CQB05_01770	COG0548	Belongs to the acetylglutamate kinase family. ArgB subfamily
CQB05_01770	COG1246	Belongs to the acetyltransferase family. ArgA subfamily
CQB05_01790	COG1495	Required for disulfide bond formation in some periplasmic proteins. Acts by oxidizing the DsbA protein
CQB05_01795	COG1118	Part of the ABC transporter complex CysAWTP involved in sulfate thiosulfate import. Responsible for energy coupling to the transport system
CQB05_01800	COG4208	sulfate ABC transporter
CQB05_01805	COG0555	PFAM binding-protein-dependent transport systems inner membrane component
CQB05_01810	COG1613	Sulfate ABC transporter periplasmic sulfate-binding protein
CQB05_01830	COG1182	Catalyzes the reductive cleavage of azo bond in aromatic azo compounds to the corresponding amines. Requires NADH, but not NADPH, as an electron donor for its activity
CQB05_01845	COG0840	transmembrane signaling receptor activity
CQB05_01850	COG2011	ABC-type metal ion transport system permease component
CQB05_01855	COG1135	Part of the ABC transporter complex MetNIQ involved in methionine import. Responsible for energy coupling to the transport system
CQB05_01865	COG2814	Major facilitator Superfamily
CQB05_01870	COG0583	DNA-binding transcription factor activity
CQB05_01875	COG0394	Belongs to the low molecular weight phosphotyrosine protein phosphatase family
CQB05_01885	COG1538	Outer membrane efflux protein
CQB05_01890	COG0841	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
CQB05_01905	COG5002	protein histidine kinase activity
CQB05_01945	COG0502	Catalyzes the conversion of dethiobiotin (DTB) to biotin by the insertion of a sulfur atom into dethiobiotin via a radical- based mechanism
CQB05_01960	COG0439	Biotin carboxylase
CQB05_01970	COG4799	Acetyl-CoA carboxylase, carboxyltransferase component subunits alpha and beta
CQB05_01975	COG1703	isobutyryl-CoA mutase activity
CQB05_01990	COG1802	Transcriptional regulator
CQB05_02055	COG0840	transmembrane signaling receptor activity
CQB05_02070	COG3039	Transposase
CQB05_02080	COG0042	Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines
CQB05_02100	COG2878	Part of a membrane complex involved in electron transport
CQB05_02105	COG0840	transmembrane signaling receptor activity
CQB05_02115	COG2171	N-acyltransferase activity
CQB05_02120	COG2805	Type II/IV secretion system protein
CQB05_02130	COG2890	protein-(glutamine-N5) methyltransferase activity
CQB05_02140	COG1028	Short-chain dehydrogenase reductase Sdr
CQB05_02145	COG0183	Belongs to the thiolase family
CQB05_02150	COG3243	poly(R)-hydroxyalkanoic acid synthase
CQB05_02180	COG0515	serine threonine protein kinase
CQB05_02190	COG0744	Peptidoglycan polymerase that catalyzes glycan chain elongation from lipid-linked precursors
CQB05_02195	COG1092	Specifically methylates the guanine in position 2445 (m2G2445) and the guanine in position 2069 (m7G2069) of 23S rRNA
CQB05_02220	COG1249	Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family
CQB05_02225	COG0508	dehydrogenase complex catalyzes the overall conversion of
CQB05_02230	COG2609	component of the pyruvate dehydrogenase (PDH) complex, that catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2)
CQB05_02240	COG4566	intracellular signal transduction
CQB05_02245	COG0190	Catalyzes the oxidation of 5,10- methylenetetrahydrofolate to 5,10-methenyltetrahydrofolate and then the hydrolysis of 5,10-methenyltetrahydrofolate to 10- formyltetrahydrofolate
CQB05_02260	COG0120	Catalyzes the reversible conversion of ribose-5- phosphate to ribulose 5-phosphate
CQB05_02265	COG0167	dihydroorotate dehydrogenase activity
CQB05_02285	COG0579	oxidoreductase
CQB05_02305	COG0847	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. The epsilon subunit contain the editing function and is a proofreading 3'-5' exonuclease
CQB05_02310	COG0633	Ferredoxin
CQB05_02315	COG0443	Heat shock 70 kDa protein
CQB05_02320	COG1076	Co-chaperone involved in the maturation of iron-sulfur cluster-containing proteins. Seems to help targeting proteins to be folded toward HscA
CQB05_02330	COG0822	iron-sulfur transferase activity
CQB05_02335	COG1104	cysteine desulfurase activity
CQB05_02340	COG1959	2 iron, 2 sulfur cluster binding
CQB05_02355	COG1804	L-carnitine dehydratase bile acid-inducible protein F
CQB05_02370	COG0840	transmembrane signaling receptor activity
CQB05_02385	COG1739	Uncharacterized protein family UPF0029
CQB05_02405	COG0154	amidase activity
CQB05_02410	COG3181	Tripartite tricarboxylate transporter family receptor
CQB05_02455	COG1188	Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit, (S4 paralog))
CQB05_02555	COG1961	COG1961 Site-specific recombinases, DNA invertase Pin homologs
CQB05_02565	COG1961	COG1961 Site-specific recombinases, DNA invertase Pin homologs
CQB05_02575	COG4128	Pfam Zonular occludens toxin
CQB05_02850	COG1974	Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair
CQB05_02880	COG4197	protein conserved in bacteria, prophage-related
CQB05_02945	COG0527	aspartate kinase activity
CQB05_02950	COG0037	tRNA processing
CQB05_02965	COG0215	cysteine-tRNA ligase activity
CQB05_02990	COG2908	Hydrolyzes the pyrophosphate bond of UDP-2,3- diacylglucosamine to yield 2,3-diacylglucosamine 1-phosphate (lipid X) and UMP by catalyzing the attack of water at the alpha-P atom. Involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell
CQB05_03020	COG1522	sequence-specific DNA binding
CQB05_03040	COG3384	dioxygenase
CQB05_03055	COG0757	Catalyzes a trans-dehydration via an enolate intermediate
CQB05_03065	COG0008	Catalyzes the attachment of glutamate to tRNA(Glu) in a two-step reaction glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu)
CQB05_03080	COG1309	transcriptional regulator
CQB05_03120	COG1502	Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol
CQB05_03150	COG0840	transmembrane signaling receptor activity
CQB05_03155	COG1653	transport
CQB05_03180	COG0564	pseudouridine synthase activity
CQB05_03185	COG1285	pathogenesis
CQB05_03200	COG2814	Major facilitator Superfamily
CQB05_03220	COG1161	Required for a late step of 50S ribosomal subunit assembly. Has GTPase activity
CQB05_03235	COG5002	protein histidine kinase activity
CQB05_03250	COG1195	it is required for DNA replication and normal SOS inducibility. RecF binds preferentially to single-stranded, linear DNA. It also seems to bind ATP
CQB05_03260	COG2918	glutathione biosynthetic process
CQB05_03270	COG3386	PFAM SMP-30 Gluconolaconase
CQB05_03290	COG1879	ABC-type sugar transport system periplasmic component
CQB05_03295	COG4213	ABC transporter substrate-binding protein
CQB05_03305	COG4214	carbohydrate transport
CQB05_03315	COG1172	Belongs to the binding-protein-dependent transport system permease family
CQB05_03320	COG1172	Belongs to the binding-protein-dependent transport system permease family
CQB05_03335	COG3734	2-keto-3-deoxy-galactonokinase
CQB05_03340	COG0800	Aldolase
CQB05_03345	COG4948	Mandelate Racemase Muconate Lactonizing
CQB05_03350	COG1289	transmembrane transporter activity
CQB05_03370	COG2201	protein-glutamate methylesterase activity
CQB05_03375	COG0745	RESPONSE REGULATOR receiver
CQB05_03385	COG2205	protein histidine kinase activity
CQB05_03385	COG2202	Pas domain
CQB05_03395	COG0633	Ferredoxin
CQB05_03410	COG0054	6,7-dimethyl-8-ribityllumazine synthase activity
CQB05_03415	COG0781	Involved in transcription antitermination. Required for transcription of ribosomal RNA (rRNA) genes. Binds specifically to the boxA antiterminator sequence of the ribosomal RNA (rrn) operons
CQB05_03420	COG0436	Aminotransferase
CQB05_03425	COG0824	Thioesterase
CQB05_03445	COG0477	Major facilitator Superfamily
CQB05_03450	COG1622	oxidoreductase activity, acting on a heme group of donors, oxygen as acceptor
CQB05_03455	COG0843	Cytochrome c oxidase is the component of the respiratory chain that catalyzes the reduction of oxygen to water. Subunits 1- 3 form the functional core of the enzyme complex. CO I is the catalytic subunit of the enzyme. Electrons originating in cytochrome c are transferred via the copper A center of subunit 2 and heme A of subunit 1 to the bimetallic center formed by heme A3 and copper B
CQB05_03460	COG1845	cytochrome c oxidase, subunit III
CQB05_03465	COG3125	oxidoreductase activity, acting on diphenols and related substances as donors, oxygen as acceptor
CQB05_03490	COG0583	DNA-binding transcription factor activity
CQB05_03510	COG1133	In Escherichia coli SbmA is involved in uptake of microcin J25
CQB05_03515	COG1049	propionate catabolic process, 2-methylcitrate cycle
CQB05_03530	COG4106	trans-aconitate 2-methyltransferase activity
CQB05_03535	COG0039	L-malate dehydrogenase activity
CQB05_03540	COG2188	Transcriptional regulator
CQB05_03555	COG1053	succinate dehydrogenase
CQB05_03560	COG0479	Belongs to the succinate dehydrogenase fumarate reductase iron-sulfur protein family
CQB05_03565	COG2938	An FAD assembly protein, which accelerates covalent attachment of the cofactor into other proteins. Plays an essential role in the assembly of succinate dehydrogenase (SDH, respiratory complex II), an enzyme complex that is a component of both the tricarboxylic acid cycle and the electron transport chain, and which couples the oxidation of succinate to fumarate with the reduction of ubiquinone (coenzyme Q) to ubiquinol. Required for flavinylation (covalent attachment of FAD) of the flavoprotein subunit SdhA of SDH
CQB05_03570	COG0372	Belongs to the citrate synthase family
CQB05_03580	COG1670	COG1670 acetyltransferases, including N-acetylases of ribosomal proteins
CQB05_03585	COG4977	sequence-specific DNA binding
CQB05_03595	COG0627	Serine hydrolase involved in the detoxification of formaldehyde
CQB05_03600	COG2194	sulfuric ester hydrolase activity
CQB05_03610	COG0473	3-isopropylmalate dehydrogenase activity
CQB05_03620	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
CQB05_03635	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
CQB05_03655	COG0111	D-isomer specific 2-hydroxyacid dehydrogenase
CQB05_03665	COG1522	sequence-specific DNA binding
CQB05_03715	COG1960	acyl-CoA dehydrogenase activity
CQB05_03730	COG1511	domain protein
CQB05_03730	COG3264	Mechanosensitive ion channel
CQB05_03740	COG1024	Enoyl-CoA hydratase
CQB05_03745	COG0123	including yeast histone deacetylase and acetoin utilization protein
CQB05_03750	COG0714	Associated with various cellular activities
CQB05_03765	COG2951	lytic endotransglycosylase activity
CQB05_03795	COG0683	leucine binding
CQB05_03810	COG0533	Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine. Is involved in the transfer of the threonylcarbamoyl moiety of threonylcarbamoyl-AMP (TC-AMP) to the N6 group of A37, together with TsaE and TsaB. TsaD likely plays a direct catalytic role in this reaction
CQB05_03830	COG0715	COG0715 ABC-type nitrate sulfonate bicarbonate transport systems periplasmic components
CQB05_03835	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
CQB05_03840	COG1116	anion transmembrane transporter activity
CQB05_03845	COG0262	Key enzyme in folate metabolism. Catalyzes an essential reaction for de novo glycine and purine synthesis, and for DNA precursor synthesis
CQB05_03860	COG0724	RNA recognition motif
CQB05_03870	COG0626	cystathionine gamma-synthase activity
CQB05_03925	COG3501	Rhs element vgr protein
CQB05_03935	COG2223	nitrite transmembrane transporter activity
CQB05_03960	COG0840	transmembrane signaling receptor activity
CQB05_03975	COG4799	Acetyl-CoA carboxylase, carboxyltransferase component subunits alpha and beta
CQB05_03980	COG2141	COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases
CQB05_03985	COG0517	IMP dehydrogenase activity
CQB05_03985	COG0516	GMP reductase activity
CQB05_03990	COG0840	transmembrane signaling receptor activity
CQB05_04000	COG0841	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
CQB05_04015	COG0840	transmembrane signaling receptor activity
CQB05_04020	COG1251	Belongs to the nitrite and sulfite reductase 4Fe-4S domain family
CQB05_04030	COG0243	molybdopterin cofactor binding
CQB05_04035	COG0547	Catalyzes the transfer of the phosphoribosyl group of 5- phosphorylribose-1-pyrophosphate (PRPP) to anthranilate to yield N-(5'-phosphoribosyl)-anthranilate (PRA)
CQB05_04045	COG2730	Belongs to the glycosyl hydrolase 5 (cellulase A) family
CQB05_04045	COG5297	Belongs to the glycosyl hydrolase family 6
CQB05_04050	COG1607	acyl-coa hydrolase
CQB05_04055	COG0288	reversible hydration of carbon dioxide
CQB05_04070	COG2081	HI0933 family
CQB05_04075	COG0640	Transcriptional regulator
CQB05_04090	COG0828	Belongs to the bacterial ribosomal protein bS21 family
CQB05_04095	COG1610	YqeY-like protein
CQB05_04100	COG0625	glutathione transferase activity
CQB05_04110	COG0583	DNA-binding transcription factor activity
CQB05_04115	COG0473	3-isopropylmalate dehydrogenase activity
CQB05_04120	COG1752	Esterase of the alpha-beta hydrolase superfamily
CQB05_04125	COG0477	Major facilitator Superfamily
CQB05_04140	COG2721	sulfolactate sulfo-lyase activity
CQB05_04160	COG3028	Belongs to the UPF0307 family
CQB05_04165	COG0521	Mo-molybdopterin cofactor biosynthetic process
CQB05_04170	COG1045	serine acetyltransferase
CQB05_04185	COG4555	ABC transporter
CQB05_04220	COG1132	(ABC) transporter
CQB05_04230	COG3437	response regulator, receiver
CQB05_04235	COG5002	protein histidine kinase activity
CQB05_04235	COG0784	Response regulator, receiver
CQB05_04235	COG2205	protein histidine kinase activity
CQB05_04290	COG0249	that it carries out the mismatch recognition step. This protein has a weak ATPase activity
CQB05_04295	COG0623	enoyl-[acyl-carrier-protein] reductase (NADH) activity
CQB05_04330	COG5002	protein histidine kinase activity
CQB05_04330	COG3447	MASE1 domain protein
CQB05_04330	COG5001	Diguanylate cyclase
CQB05_04335	COG1968	undecaprenyl-diphosphatase activity
CQB05_04340	COG1538	Outer membrane efflux protein
CQB05_04365	COG3275	phosphorelay sensor kinase activity
CQB05_04370	COG3279	Response regulator of the LytR AlgR family
CQB05_04395	COG3585	molybdate ion transport
CQB05_04395	COG2005	Transcriptional regulator
CQB05_04415	COG4148	Part of the ABC transporter complex ModABC involved in molybdenum import. Responsible for energy coupling to the transport system
CQB05_04420	COG1292	Belongs to the BCCT transporter (TC 2.A.15) family
CQB05_04425	COG0296	Catalyzes the formation of the alpha-1,6-glucosidic linkages in glycogen by scission of a 1,4-alpha-linked oligosaccharide from growing alpha-1,4-glucan chains and the subsequent attachment of the oligosaccharide to the alpha-1,6 position
CQB05_04430	COG0366	Alpha amylase catalytic
CQB05_04435	COG0366	Alpha amylase catalytic
CQB05_04440	COG0668	transmembrane transport
CQB05_04465	COG4663	Part of the tripartite ATP-independent periplasmic (TRAP) transport system
CQB05_04470	COG1154	Catalyzes the acyloin condensation reaction between C atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D-xylulose-5-phosphate (DXP)
CQB05_04475	COG0142	geranyltranstransferase activity
CQB05_04480	COG1722	exodeoxyribonuclease VII activity
CQB05_04535	COG0628	permease
CQB05_04540	COG1289	transmembrane transporter activity
CQB05_04545	COG2352	Forms oxaloacetate, a four-carbon dicarboxylic acid source for the tricarboxylic acid cycle
CQB05_04550	COG0181	hydroxymethylbilane synthase activity
CQB05_04570	COG0488	(ABC) transporter
CQB05_04580	COG0501	Belongs to the peptidase M48B family
CQB05_04590	COG1210	Utp--glucose-1-phosphate uridylyltransferase
CQB05_04600	COG0425	Belongs to the sulfur carrier protein TusA family
CQB05_04605	COG2816	NAD+ diphosphatase activity
CQB05_04635	COG0583	DNA-binding transcription factor activity
CQB05_04640	COG1960	acyl-CoA dehydrogenase activity
CQB05_04645	COG1804	L-carnitine dehydratase bile acid-inducible protein F
CQB05_04685	COG0617	tRNA 3'-terminal CCA addition
CQB05_04695	COG0593	it binds specifically double-stranded DNA at a 9 bp consensus (dnaA box) 5'-TTATC CA A CA A-3'. DnaA binds to ATP and to acidic phospholipids
CQB05_04700	COG0150	phosphoribosylformylglycinamidine cyclo-ligase activity
CQB05_04730	COG0389	Poorly processive, error-prone DNA polymerase involved in untargeted mutagenesis. Copies undamaged DNA at stalled replication forks, which arise in vivo from mismatched or misaligned primer ends. These misaligned primers can be extended by PolIV. Exhibits no 3'-5' exonuclease (proofreading) activity. May be involved in translesional synthesis, in conjunction with the beta clamp from PolIII
CQB05_04755	COG1304	FMN binding
CQB05_04765	COG0744	Peptidoglycan polymerase that catalyzes glycan chain elongation from lipid-linked precursors
CQB05_04805	COG0165	Argininosuccinate lyase
CQB05_04810	COG3275	phosphorelay sensor kinase activity
CQB05_04825	COG0165	Argininosuccinate lyase
CQB05_04835	COG0412	Dienelactone hydrolase
CQB05_04865	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
CQB05_04870	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
CQB05_04910	COG2334	A protein kinase that phosphorylates Ser and Thr residues. Probably acts to suppress the effects of stress linked to accumulation of reactive oxygen species. Probably involved in the extracytoplasmic stress response
CQB05_05050	COG2204	response regulator
CQB05_05055	COG5002	protein histidine kinase activity
CQB05_05060	COG1508	bacterial-type RNA polymerase transcriptional activator activity, sequence-specific DNA binding
CQB05_05075	COG2814	Major facilitator Superfamily
CQB05_05080	COG3447	MASE1 domain protein
CQB05_05080	COG5002	protein histidine kinase activity
CQB05_05080	COG5001	Diguanylate cyclase
CQB05_05085	COG0513	Belongs to the DEAD box helicase family
CQB05_05090	COG1949	3'-to-5' exoribonuclease specific for small oligoribonucleotides
CQB05_05100	COG2154	pterin-4-alpha-carbinolamine dehydratase
CQB05_05105	COG1162	GTPase activity
CQB05_05110	COG1270	Converts cobyric acid to cobinamide by the addition of aminopropanol on the F carboxylic group
CQB05_05120	COG0335	large ribosomal subunit rRNA binding
CQB05_05125	COG0336	Belongs to the RNA methyltransferase TrmD family
CQB05_05130	COG0806	An accessory protein needed during the final step in the assembly of 30S ribosomal subunit, possibly for assembly of the head region. Probably interacts with S19. Essential for efficient processing of 16S rRNA. May be needed both before and after RbfA during the maturation of 16S rRNA. It has affinity for free ribosomal 30S subunits but not for 70S ribosomes
CQB05_05135	COG0228	four-way junction DNA binding
CQB05_05150	COG0306	phosphate transporter
CQB05_05155	COG1392	Phosphate transport regulator
CQB05_05160	COG2885	chlorophyll binding
CQB05_05160	COG3637	Has lipid A 3-O-deacylase activity. Hydrolyzes the ester bond at the 3 position of lipid A, a bioactive component of lipopolysaccharide (LPS), thereby releasing the primary fatty acyl moiety
CQB05_05170	COG0411	ABC transporter
CQB05_05185	COG0840	transmembrane signaling receptor activity
CQB05_05190	COG2256	atpase related to the helicase subunit of the holliday junction resolvase
CQB05_05195	COG1573	uracil-dna glycosylase
CQB05_05210	COG2834	Participates in the translocation of lipoproteins from the inner membrane to the outer membrane. Only forms a complex with a lipoprotein if the residue after the N-terminal Cys is not an aspartate (The Asp acts as a targeting signal to indicate that the lipoprotein should stay in the inner membrane)
CQB05_05220	COG0492	ferredoxin-NADP+ reductase activity
CQB05_05225	COG0227	Belongs to the bacterial ribosomal protein bL28 family
CQB05_05230	COG0267	Belongs to the bacterial ribosomal protein bL33 family
CQB05_05235	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
CQB05_05250	COG0781	Involved in transcription antitermination. Required for transcription of ribosomal RNA (rRNA) genes. Binds specifically to the boxA antiterminator sequence of the ribosomal RNA (rrn) operons
CQB05_05250	COG0144	Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA
CQB05_05255	COG3866	Pectate lyase
CQB05_05270	COG0299	Catalyzes the transfer of a formyl group from 10- formyltetrahydrofolate to 5-phospho-ribosyl-glycinamide (GAR), producing 5-phospho-ribosyl-N-formylglycinamide (FGAR) and tetrahydrofolate
CQB05_05275	COG3132	Protein of unknown function, DUF480
CQB05_05280	COG1960	acyl-CoA dehydrogenase activity
CQB05_05300	COG2227	3-demethylubiquinone-9 3-O-methyltransferase activity
CQB05_05305	COG0840	transmembrane signaling receptor activity
CQB05_05310	COG1593	TRAP-type C4-dicarboxylate transport system, large permease component
CQB05_05320	COG1638	TRAP-type C4-dicarboxylate transport system periplasmic component
CQB05_05330	COG0196	riboflavin kinase activity
CQB05_05340	COG0597	This protein specifically catalyzes the removal of signal peptides from prolipoproteins
CQB05_05350	COG1609	Transcriptional regulator
CQB05_05360	COG4149	molybdate abc transporter
CQB05_05365	COG1177	transmembrane transport
CQB05_05370	COG3842	ATPase activity
CQB05_05375	COG1409	Hydrolyzes cAMP to 5'-AMP. Plays an important regulatory role in modulating the intracellular concentration of cAMP, thereby influencing cAMP-dependent processes
CQB05_05385	COG3039	Transposase
CQB05_05390	COG1283	sodium-dependent phosphate transmembrane transporter activity
CQB05_05405	COG0583	DNA-binding transcription factor activity
CQB05_05435	COG0697	spore germination
CQB05_05505	COG3209	COG3209 Rhs family protein
CQB05_05530	COG3501	Rhs element vgr protein
CQB05_05560	COG2814	Major facilitator Superfamily
CQB05_05605	COG1301	dicarboxylic acid transport
CQB05_05610	COG5599	Phosphatase
CQB05_05630	COG3038	cytochrome b561
CQB05_05645	COG4770	biotin carboxylase activity
CQB05_05650	COG2049	5-oxoprolinase (ATP-hydrolyzing) activity
CQB05_05655	COG4336	lyase activity
CQB05_05660	COG1540	5-oxoprolinase (ATP-hydrolyzing) activity
CQB05_05685	COG2205	protein histidine kinase activity
CQB05_05690	COG1304	FMN binding
CQB05_05715	COG5001	Diguanylate cyclase
CQB05_05730	COG0831	urea catabolic process
CQB05_05740	COG0832	Belongs to the urease beta subunit family
CQB05_05745	COG0804	urea catabolic process
CQB05_05755	COG2371	Involved in urease metallocenter assembly. Binds nickel. Probably functions as a nickel donor during metallocenter assembly
CQB05_05760	COG0830	nickel cation binding
CQB05_05765	COG0378	Facilitates the functional incorporation of the urease nickel metallocenter. This process requires GTP hydrolysis, probably effectuated by UreG
CQB05_05780	COG0464	growth
CQB05_05810	COG2205	protein histidine kinase activity
CQB05_05825	COG2202	Pas domain
CQB05_05825	COG2199	diguanylate cyclase activity
CQB05_05825	COG2200	EAL domain
CQB05_05845	COG4968	Prepilin-type N-terminal cleavage methylation domain
CQB05_05850	COG4968	Prepilin-type N-terminal cleavage methylation domain
CQB05_05875	COG0117	Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'-phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)- pyrimidinedione 5'-phosphate
CQB05_05875	COG1985	Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'-phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)- pyrimidinedione 5'-phosphate
CQB05_05920	COG0784	Response regulator, receiver
CQB05_05920	COG4191	Histidine kinase
CQB05_05925	COG2230	cyclopropane-fatty-acyl-phospholipid synthase
CQB05_05950	COG1595	DNA-templated transcription, initiation
CQB05_05965	COG2230	cyclopropane-fatty-acyl-phospholipid synthase
CQB05_05970	COG4221	oxidoreductase activity
CQB05_05990	COG0127	Pyrophosphatase that catalyzes the hydrolysis of nucleoside triphosphates to their monophosphate derivatives, with a high preference for the non-canonical purine nucleotides XTP (xanthosine triphosphate), dITP (deoxyinosine triphosphate) and ITP. Seems to function as a house-cleaning enzyme that removes non-canonical purine nucleotides from the nucleotide pool, thus preventing their incorporation into DNA RNA and avoiding chromosomal lesions
CQB05_06010	COG1561	YicC-like family, N-terminal region
CQB05_06015	COG0194	GDP metabolic process
CQB05_06020	COG1758	RNA polymerase activity
CQB05_06025	COG0317	In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance
CQB05_06055	COG3693	PFAM glycoside hydrolase, family 10
CQB05_06060	COG2197	response regulator
CQB05_06070	COG1420	regulation of RNA biosynthetic process
CQB05_06075	COG1961	COG1961 Site-specific recombinases, DNA invertase Pin homologs
CQB05_06120	COG0061	Involved in the regulation of the intracellular balance of NAD and NADP, and is a key enzyme in the biosynthesis of NADP. Catalyzes specifically the phosphorylation on 2'-hydroxyl of the adenosine moiety of NAD to yield NADP
CQB05_06125	COG0497	DNA recombination
CQB05_06130	COG1660	Displays ATPase and GTPase activities
CQB05_06135	COG1194	a g-specific adenine glycosylase
CQB05_06145	COG0266	class I DNA-(apurinic or apyrimidinic site) endonuclease activity
CQB05_06160	COG1947	Catalyzes the phosphorylation of the position 2 hydroxy group of 4-diphosphocytidyl-2C-methyl-D-erythritol
CQB05_06170	COG0462	Involved in the biosynthesis of the central metabolite phospho-alpha-D-ribosyl-1-pyrophosphate (PRPP) via the transfer of pyrophosphoryl group from ATP to 1-hydroxyl of ribose-5-phosphate (Rib-5-P)
CQB05_06175	COG1825	This is one of the proteins that binds to the 5S RNA in the ribosome where it forms part of the central protuberance
CQB05_06180	COG0193	aminoacyl-tRNA hydrolase activity
CQB05_06185	COG1145	4fe-4S ferredoxin, iron-sulfur binding domain protein
CQB05_06195	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
CQB05_06200	COG0444	Belongs to the ABC transporter superfamily
CQB05_06205	COG4608	Belongs to the ABC transporter superfamily
CQB05_06215	COG0747	negative chemotaxis
CQB05_06240	COG1609	Transcriptional regulator
CQB05_06270	COG0302	gtp cyclohydrolase
CQB05_06275	COG1502	Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol
CQB05_06290	COG0494	nUDIX hydrolase
CQB05_06300	COG0173	Aspartyl-tRNA synthetase with relaxed tRNA specificity since it is able to aspartylate not only its cognate tRNA(Asp) but also tRNA(Asn). Reaction proceeds in two steps L-aspartate is first activated by ATP to form Asp-AMP and then transferred to the acceptor end of tRNA(Asp Asn)
CQB05_06320	COG0661	Is probably a protein kinase regulator of UbiI activity which is involved in aerobic coenzyme Q (ubiquinone) biosynthesis
CQB05_06335	COG2226	methyltransferase
CQB05_06345	COG3706	GGDEF domain
CQB05_06345	COG0745	RESPONSE REGULATOR receiver
CQB05_06360	COG0111	D-isomer specific 2-hydroxyacid dehydrogenase
CQB05_06365	COG1653	transport
CQB05_06370	COG1175	transmembrane transport
CQB05_06375	COG0395	ABC-type sugar transport system, permease component
CQB05_06380	COG3842	ATPase activity
CQB05_06390	COG0584	glycerophosphoryl diester phosphodiesterase
CQB05_06395	COG1511	domain protein
CQB05_06395	COG3264	Mechanosensitive ion channel
CQB05_06410	COG0324	Catalyzes the transfer of a dimethylallyl group onto the adenine at position 37 in tRNAs that read codons beginning with uridine, leading to the formation of N6-(dimethylallyl)adenosine (i(6)A)
CQB05_06435	COG0373	Catalyzes the NADPH-dependent reduction of glutamyl- tRNA(Glu) to glutamate 1-semialdehyde (GSA)
CQB05_06440	COG0216	Peptide chain release factor 1 directs the termination of translation in response to the peptide chain termination codons UAG and UAA
CQB05_06450	COG0278	Belongs to the glutaredoxin family. Monothiol subfamily
CQB05_06455	COG0466	ATP-dependent serine protease that mediates the selective degradation of mutant and abnormal proteins as well as certain short-lived regulatory proteins. Required for cellular homeostasis and for survival from DNA damage and developmental changes induced by stress. Degrades polypeptides processively to yield small peptide fragments that are 5 to 10 amino acids long. Binds to DNA in a double-stranded, site-specific manner
CQB05_06460	COG1253	flavin adenine dinucleotide binding
CQB05_06470	COG0442	prolyl-tRNA aminoacylation
CQB05_06475	COG0494	nUDIX hydrolase
CQB05_06480	COG0263	Catalyzes the transfer of a phosphate group to glutamate to form L-glutamate 5-phosphate
CQB05_06485	COG0536	An essential GTPase which binds GTP, GDP and possibly (p)ppGpp with moderate affinity, with high nucleotide exchange rates and a fairly low GTP hydrolysis rate. Plays a role in control of the cell cycle, stress response, ribosome biogenesis and in those bacteria that undergo differentiation, in morphogenesis control
CQB05_06490	COG0211	Belongs to the bacterial ribosomal protein bL27 family
CQB05_06495	COG0261	This protein binds to 23S rRNA in the presence of protein L20
CQB05_06500	COG0142	geranyltranstransferase activity
CQB05_06510	COG1473	amidohydrolase
CQB05_06540	COG0237	dephospho-CoA kinase activity
CQB05_06545	COG4582	Cell division factor that enhances FtsZ-ring assembly. Directly interacts with FtsZ and promotes bundling of FtsZ protofilaments, with a reduction in FtsZ GTPase activity
CQB05_06550	COG3024	Inhibits all the catalytic activities of DNA gyrase by preventing its interaction with DNA. Acts by binding directly to the C-terminal domain of GyrB, which probably disrupts DNA binding by the gyrase
CQB05_06555	COG0494	nUDIX hydrolase
CQB05_06565	COG1364	Catalyzes two activities which are involved in the cyclic version of arginine biosynthesis the synthesis of N- acetylglutamate from glutamate and acetyl-CoA as the acetyl donor, and of ornithine by transacetylation between N(2)-acetylornithine and glutamate
CQB05_06570	COG0653	protein targeting
CQB05_06575	COG0739	heme binding
CQB05_06590	COG2969	positive regulation of protein catabolic process
CQB05_06595	COG0625	glutathione transferase activity
CQB05_06600	COG2857	Cytochrome c1
CQB05_06610	COG0723	plastoquinol--plastocyanin reductase activity
CQB05_06615	COG1970	mechanosensitive ion channel activity
CQB05_06620	COG1995	Catalyzes the NAD(P)-dependent oxidation of 4- (phosphohydroxy)-L-threonine (HTP) into 2-amino-3-oxo-4- (phosphohydroxy)butyric acid which spontaneously decarboxylates to form 3-amino-2-oxopropyl phosphate (AHAP)
CQB05_06625	COG1136	(ABC) transporter
CQB05_06630	COG4591	ABC-type transport system involved in lipoprotein release permease component
CQB05_06640	COG0608	single-stranded DNA 5'-3' exodeoxyribonuclease activity
CQB05_06655	COG0738	Major facilitator superfamily
CQB05_06660	COG0613	PHP domain protein
CQB05_06665	COG0009	L-threonylcarbamoyladenylate synthase
CQB05_06675	COG1994	Peptidase M50
CQB05_06680	COG0180	Tryptophanyl-tRNA synthetase
CQB05_06685	COG3209	COG3209 Rhs family protein
CQB05_06710	COG4992	N2-acetyl-L-ornithine:2-oxoglutarate 5-aminotransferase activity
CQB05_06755	COG0299	Catalyzes the transfer of a formyl group from 10- formyltetrahydrofolate to 5-phospho-ribosyl-glycinamide (GAR), producing 5-phospho-ribosyl-N-formylglycinamide (FGAR) and tetrahydrofolate
CQB05_06765	COG4774	siderophore transport
CQB05_06770	COG1020	D-alanine [D-alanyl carrier protein] ligase activity
CQB05_06825	COG0443	Heat shock 70 kDa protein
CQB05_06865	COG0038	chloride channel
CQB05_06875	COG3501	Rhs element vgr protein
CQB05_06880	COG0612	Peptidase, M16
CQB05_06885	COG0765	amino acid transport
CQB05_06890	COG0765	amino acid transport
CQB05_06895	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
CQB05_06910	COG0129	dihydroxy-acid dehydratase activity
CQB05_06955	COG0172	Catalyzes the attachment of serine to tRNA(Ser). Is also able to aminoacylate tRNA(Sec) with serine, to form the misacylated tRNA L-seryl-tRNA(Sec), which will be further converted into selenocysteinyl-tRNA(Sec)
CQB05_06960	COG1171	Catalyzes the anaerobic formation of alpha-ketobutyrate and ammonia from threonine in a two-step reaction. The first step involved a dehydration of threonine and a production of enamine intermediates (aminocrotonate), which tautomerizes to its imine form (iminobutyrate). Both intermediates are unstable and short- lived. The second step is the nonenzymatic hydrolysis of the enamine imine intermediates to form 2-ketobutyrate and free ammonia. In the low water environment of the cell, the second step is accelerated by RidA
CQB05_06970	COG1253	flavin adenine dinucleotide binding
CQB05_06975	COG0761	Catalyzes the conversion of 1-hydroxy-2-methyl-2-(E)- butenyl 4-diphosphate (HMBPP) into a mixture of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). Acts in the terminal step of the DOXP MEP pathway for isoprenoid precursor biosynthesis
CQB05_06980	COG1047	Peptidyl-prolyl cis-trans
CQB05_06985	COG2003	Belongs to the UPF0758 family
CQB05_07005	COG1193	negative regulation of DNA recombination
CQB05_07010	COG2205	protein histidine kinase activity
CQB05_07015	COG0745	RESPONSE REGULATOR receiver
CQB05_07030	COG0737	Belongs to the 5'-nucleotidase family
CQB05_07035	COG3501	Rhs element vgr protein
CQB05_07060	COG3209	COG3209 Rhs family protein
CQB05_07080	COG3209	COG3209 Rhs family protein
CQB05_07105	COG0236	Carrier of the growing fatty acid chain in fatty acid biosynthesis
CQB05_07120	COG0534	Mate efflux family protein
CQB05_07125	COG0318	PFAM AMP-dependent synthetase and ligase
CQB05_07155	COG2771	luxR family
CQB05_07160	COG3916	Acyl-homoserine-lactone synthase
CQB05_07180	COG0154	amidase activity
CQB05_07185	COG0683	leucine binding
CQB05_07205	COG0559	Belongs to the binding-protein-dependent transport system permease family
CQB05_07225	COG3127	ABC-type transport system involved in lysophospholipase L1, biosynthesis, permease component
CQB05_07235	COG1526	Required for formate dehydrogenase (FDH) activity. Acts as a sulfur carrier protein that transfers sulfur from IscS to the molybdenum cofactor prior to its insertion into FDH
CQB05_07240	COG0243	molybdopterin cofactor binding
CQB05_07245	COG0840	transmembrane signaling receptor activity
CQB05_07255	COG0489	protein tyrosine kinase activity
CQB05_07270	COG0028	Belongs to the TPP enzyme family
CQB05_07275	COG0143	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
CQB05_07275	COG0073	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
CQB05_07305	COG0029	Catalyzes the oxidation of L-aspartate to iminoaspartate
CQB05_07315	COG0132	Catalyzes a mechanistically unusual reaction, the ATP- dependent insertion of CO2 between the N7 and N8 nitrogen atoms of 7,8-diaminopelargonic acid (DAPA) to form an ureido ring
CQB05_07320	COG0156	8-amino-7-oxononanoate synthase activity
CQB05_07325	COG0602	queuosine metabolic process
CQB05_07330	COG0720	synthase
CQB05_07355	COG0379	Catalyzes the condensation of iminoaspartate with dihydroxyacetone phosphate to form quinolinate
CQB05_07365	COG0413	3-methyl-2-oxobutanoate hydroxymethyltransferase activity
CQB05_07370	COG0414	Catalyzes the condensation of pantoate with beta-alanine in an ATP-dependent reaction via a pantoyl-adenylate intermediate
CQB05_07375	COG0240	glycerol-3-phosphate dehydrogenase [NAD(P)+] activity
CQB05_07380	COG1952	One of the proteins required for the normal export of preproteins out of the cell cytoplasm. It is a molecular chaperone that binds to a subset of precursor proteins, maintaining them in a translocation-competent state. It also specifically binds to its receptor SecA
CQB05_07390	COG0607	Catalyzes the ATP-dependent transfer of a sulfur to tRNA to produce 4-thiouridine in position 8 of tRNAs, which functions as a near-UV photosensor. Also catalyzes the transfer of sulfur to the sulfur carrier protein ThiS, forming ThiS-thiocarboxylate. This is a step in the synthesis of thiazole, in the thiamine biosynthesis pathway. The sulfur is donated as persulfide by IscS
CQB05_07395	COG0588	phosphoglycerate mutase activity
CQB05_07400	COG0793	Belongs to the peptidase S41A family
CQB05_07405	COG0476	Involved in molybdopterin and thiamine biosynthesis, family 2
CQB05_07415	COG2197	response regulator
CQB05_07425	COG5487	UPF0391 membrane protein
CQB05_07450	COG0669	Reversibly transfers an adenylyl group from ATP to 4'- phosphopantetheine, yielding dephospho-CoA (dPCoA) and pyrophosphate
CQB05_07455	COG0742	ribosomal rna small subunit methyltransferase
CQB05_07460	COG0612	Peptidase, M16
CQB05_07465	COG0612	Peptidase, M16
CQB05_07475	COG0179	Fumarylacetoacetate (FAA) hydrolase
CQB05_07500	COG0840	transmembrane signaling receptor activity
CQB05_07505	COG4977	sequence-specific DNA binding
CQB05_07520	COG0534	Mate efflux family protein
CQB05_07550	COG3842	ATPase activity
CQB05_07560	COG0583	DNA-binding transcription factor activity
CQB05_07570	COG0568	sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released
CQB05_07590	COG1999	signal sequence binding
CQB05_07595	COG0109	protoheme IX farnesyltransferase activity
CQB05_07600	COG1612	heme a metabolic process
CQB05_07645	COG2226	methyltransferase
CQB05_07650	COG1040	competence protein
CQB05_07655	COG0219	Methylates the ribose at the nucleotide 34 wobble position in the two leucyl isoacceptors tRNA(Leu)(CmAA) and tRNA(Leu)(cmnm5UmAA). Catalyzes the methyl transfer from S- adenosyl-L-methionine to the 2'-OH of the wobble nucleotide
CQB05_07660	COG0583	DNA-binding transcription factor activity
CQB05_07675	COG1192	Involved in chromosome partitioning
CQB05_07680	COG1280	lysine exporter protein (LysE YggA)
CQB05_07690	COG4774	siderophore transport
CQB05_07710	COG3038	cytochrome b561
CQB05_07715	COG1846	Transcriptional regulator
CQB05_07720	COG0840	transmembrane signaling receptor activity
CQB05_07725	COG0477	Major facilitator Superfamily
CQB05_07730	COG1529	Aldehyde oxidase and xanthine dehydrogenase
CQB05_07730	COG2010	Cytochrome c
CQB05_07735	COG2080	2 iron, 2 sulfur cluster binding
CQB05_07745	COG3473	Maleate cis-trans isomerase
CQB05_07750	COG0596	Alpha beta hydrolase
CQB05_07755	COG2309	aminopeptidase activity
CQB05_07760	COG1335	isochorismatase
CQB05_07765	COG1529	Aldehyde oxidase and xanthine dehydrogenase
CQB05_07765	COG2010	Cytochrome c
CQB05_07785	COG3387	PFAM Glycoside hydrolase 15-related
CQB05_07790	COG3181	Tripartite tricarboxylate transporter family receptor
CQB05_07800	COG2031	fatty acid transporter
CQB05_07820	COG2021	Transfers an acetyl group from acetyl-CoA to L- homoserine, forming acetyl-L-homoserine
CQB05_07825	COG0183	Belongs to the thiolase family
CQB05_07830	COG2057	Acyl CoA acetate 3-ketoacid CoA transferase beta subunit
CQB05_07840	COG1414	Transcriptional regulator
CQB05_07870	COG0465	Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins
CQB05_07925	COG0642	Histidine kinase
CQB05_07930	COG0745	RESPONSE REGULATOR receiver
CQB05_07935	COG0265	Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain
CQB05_07950	COG0346	lactoylglutathione lyase activity
CQB05_07980	COG2141	COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases
CQB05_08010	COG1132	(ABC) transporter
CQB05_08025	COG3045	CreA protein
CQB05_08040	COG1804	L-carnitine dehydratase bile acid-inducible protein F
CQB05_08060	COG3145	DNA-N1-methyladenine dioxygenase activity
CQB05_08075	COG0753	catalase activity
CQB05_08080	COG0745	RESPONSE REGULATOR receiver
CQB05_08095	COG1352	Methylation of the membrane-bound methyl-accepting chemotaxis proteins (MCP) to form gamma-glutamyl methyl ester residues in MCP
CQB05_08110	COG3706	GGDEF domain
CQB05_08130	COG0601	transmembrane transport
CQB05_08135	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
CQB05_08145	COG0514	ATP-dependent DNA helicase (RecQ)
CQB05_08160	COG3209	COG3209 Rhs family protein
CQB05_08160	COG3209	COG3209 Rhs family protein
CQB05_08165	COG3501	Rhs element vgr protein
CQB05_08180	COG1529	Aldehyde oxidase and xanthine dehydrogenase
CQB05_08185	COG1319	Aerobic-type carbon monoxide dehydrogenase, middle subunit CoxM
CQB05_08190	COG2080	2 iron, 2 sulfur cluster binding
CQB05_08230	COG0737	Belongs to the 5'-nucleotidase family
CQB05_08235	COG0583	DNA-binding transcription factor activity
CQB05_08240	COG2855	membrane
CQB05_08275	COG2267	carboxylic ester hydrolase activity
CQB05_08285	COG3002	Belongs to the UPF0753 family
CQB05_08290	COG1009	NADH ubiquinone oxidoreductase subunit 5 chain L Multisubunit Na H antiporter, MnhA subunit
CQB05_08300	COG0449	glutamine-fructose-6-phosphate transaminase (isomerizing) activity
CQB05_08310	COG2205	protein histidine kinase activity
CQB05_08315	COG1207	Catalyzes the last two sequential reactions in the de novo biosynthetic pathway for UDP-N-acetylglucosamine (UDP- GlcNAc). The C-terminal domain catalyzes the transfer of acetyl group from acetyl coenzyme A to glucosamine-1-phosphate (GlcN-1-P) to produce N-acetylglucosamine-1-phosphate (GlcNAc-1-P), which is converted into UDP-GlcNAc by the transfer of uridine 5- monophosphate (from uridine 5-triphosphate), a reaction catalyzed by the N-terminal domain
CQB05_08340	COG0583	DNA-binding transcription factor activity
CQB05_08355	COG2377	Catalyzes the specific phosphorylation of 1,6-anhydro-N- acetylmuramic acid (anhMurNAc) with the simultaneous cleavage of the 1,6-anhydro ring, generating MurNAc-6-P. Is required for the utilization of anhMurNAc either imported from the medium or derived from its own cell wall murein, and thus plays a role in cell wall recycling
CQB05_08365	COG0316	Belongs to the HesB IscA family
CQB05_08380	COG0103	maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
CQB05_08385	COG0102	This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly
CQB05_08390	COG0515	serine threonine protein kinase
CQB05_08390	COG1520	Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane
CQB05_08395	COG2961	Specifically methylates the adenine in position 2030 of 23S rRNA
CQB05_08400	COG0797	Lytic transglycosylase with a strong preference for naked glycan strands that lack stem peptides
CQB05_08420	COG0499	May play a key role in the regulation of the intracellular concentration of adenosylhomocysteine
CQB05_08430	COG4108	Increases the formation of ribosomal termination complexes and stimulates activities of RF-1 and RF-2. It binds guanine nucleotides and has strong preference for UGA stop codons. It may interact directly with the ribosome. The stimulation of RF- 1 and RF-2 is significantly reduced by GTP and GDP, but not by GMP
CQB05_08440	COG2076	Multidrug Resistance protein
CQB05_08470	COG1126	abc transporter atp-binding protein
CQB05_08475	COG0765	amino acid transport
CQB05_08480	COG0765	amino acid transport
CQB05_08485	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
CQB05_08495	COG0583	DNA-binding transcription factor activity
CQB05_08500	COG3090	Trap-type c4-dicarboxylate transport system, small permease component
CQB05_08510	COG1638	TRAP-type C4-dicarboxylate transport system periplasmic component
CQB05_08515	COG5265	(ABC) transporter
CQB05_08520	COG1607	acyl-coa hydrolase
CQB05_08530	COG3181	Tripartite tricarboxylate transporter family receptor
CQB05_08535	COG1024	Enoyl-CoA hydratase
CQB05_08545	COG0183	Belongs to the thiolase family
CQB05_08555	COG1024	Enoyl-CoA hydratase
CQB05_08555	COG1250	3-hydroxyacyl-CoA dehydrogenase
CQB05_08565	COG1960	acyl-CoA dehydrogenase activity
CQB05_08815	COG3706	GGDEF domain
CQB05_08840	COG0411	ABC transporter
CQB05_08850	COG0559	Belongs to the binding-protein-dependent transport system permease family
CQB05_08860	COG0318	PFAM AMP-dependent synthetase and ligase
CQB05_08865	COG0397	Uncharacterized ACR, YdiU/UPF0061 family
CQB05_08870	COG0229	Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine
CQB05_08875	COG2917	probably involved in intracellular septation
CQB05_08885	COG0760	Chaperone involved in the correct folding and assembly of outer membrane proteins. Recognizes specific patterns of aromatic residues and the orientation of their side chains, which are found more frequently in integral outer membrane proteins. May act in both early periplasmic and late outer membrane-associated steps of protein maturation
CQB05_08905	COG0361	One of the essential components for the initiation of protein synthesis. Stabilizes the binding of IF-2 and IF-3 on the 30S subunit to which N-formylmethionyl-tRNA(fMet) subsequently binds. Helps modulate mRNA selection, yielding the 30S pre- initiation complex (PIC). Upon addition of the 50S ribosomal subunit IF-1, IF-2 and IF-3 are released leaving the mature 70S translation initation complex
CQB05_08910	COG0688	phosphatidylethanolamine metabolic process
CQB05_08925	COG5006	permease, DMT superfamily
CQB05_08940	COG1228	amidohydrolase
CQB05_08955	COG2987	Catalyzes the conversion of urocanate to 4-imidazolone- 5-propionate
CQB05_08960	COG2986	histidine ammonia-lyase
CQB05_08965	COG2188	Transcriptional regulator
CQB05_08975	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
CQB05_08985	COG1366	Belongs to the anti-sigma-factor antagonist family
CQB05_08990	COG1366	Belongs to the anti-sigma-factor antagonist family
CQB05_08995	COG2172	sigma factor antagonist activity
CQB05_09005	COG2205	protein histidine kinase activity
CQB05_09010	COG2205	protein histidine kinase activity
CQB05_09015	COG4191	Histidine kinase
CQB05_09015	COG0784	Response regulator, receiver
CQB05_09045	COG0448	Catalyzes the synthesis of ADP-glucose, a sugar donor used in elongation reactions on alpha-glucans
CQB05_09065	COG0297	glycogen (starch) synthase activity
CQB05_09075	COG1028	Short-chain dehydrogenase reductase Sdr
CQB05_09080	COG0557	exoribonuclease II activity
CQB05_09105	COG0741	lytic transglycosylase activity
CQB05_09110	COG0112	Catalyzes the reversible interconversion of serine and glycine with tetrahydrofolate (THF) serving as the one-carbon carrier. This reaction serves as the major source of one-carbon groups required for the biosynthesis of purines, thymidylate, methionine, and other important biomolecules. Also exhibits THF- independent aldolase activity toward beta-hydroxyamino acids, producing glycine and aldehydes, via a retro-aldol mechanism
CQB05_09115	COG1327	Negatively regulates transcription of bacterial ribonucleotide reductase nrd genes and operons by binding to NrdR- boxes
CQB05_09125	COG0082	Catalyzes the anti-1,4-elimination of the C-3 phosphate and the C-6 proR hydrogen from 5-enolpyruvylshikimate-3-phosphate (EPSP) to yield chorismate, which is the branch point compound that serves as the starting substrate for the three terminal pathways of aromatic amino acid biosynthesis. This reaction introduces a second double bond into the aromatic ring system
CQB05_09130	COG1125	glycine betaine transport
CQB05_09130	COG0517	IMP dehydrogenase activity
CQB05_09145	COG1011	Hydrolase
CQB05_09150	COG0276	Catalyzes the ferrous insertion into protoporphyrin IX
CQB05_09155	COG5002	protein histidine kinase activity
CQB05_09205	COG3181	Tripartite tricarboxylate transporter family receptor
CQB05_09215	COG0642	Histidine kinase
CQB05_09230	COG0667	Aldo Keto reductase
CQB05_09235	COG0846	NAD-dependent lysine deacetylase and desuccinylase that specifically removes acetyl and succinyl groups on target proteins. Modulates the activities of several proteins which are inactive in their acylated form
CQB05_09240	COG0566	Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family
CQB05_09245	COG4181	ATPase activity
CQB05_09280	COG0455	bacterial-type flagellum organization
CQB05_09290	COG1741	Belongs to the pirin family
CQB05_09300	COG1741	Belongs to the pirin family
CQB05_09305	COG0583	DNA-binding transcription factor activity
CQB05_09315	COG0008	Catalyzes the attachment of glutamate to tRNA(Glu) in a two-step reaction glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu)
CQB05_09320	COG0220	tRNA (guanine-N7-)-methyltransferase activity
CQB05_09330	COG0013	Catalyzes the attachment of alanine to tRNA(Ala) in a two-step reaction alanine is first activated by ATP to form Ala- AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain
CQB05_09350	COG0583	DNA-binding transcription factor activity
CQB05_09360	COG1116	anion transmembrane transporter activity
CQB05_09365	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
CQB05_09375	COG2141	COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases
CQB05_09385	COG0715	COG0715 ABC-type nitrate sulfonate bicarbonate transport systems periplasmic components
CQB05_09395	COG2924	Could be a mediator in iron transactions between iron acquisition and iron-requiring processes, such as synthesis and or repair of Fe-S clusters in biosynthetic enzymes
CQB05_09400	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
CQB05_09400	COG4121	Catalyzes the last two steps in the biosynthesis of 5- methylaminomethyl-2-thiouridine (mnm(5)s(2)U) at the wobble position (U34) in tRNA. Catalyzes the FAD-dependent demodification of cmnm(5)s(2)U34 to nm(5)s(2)U34, followed by the transfer of a methyl group from S-adenosyl-L-methionine to nm(5)s(2)U34, to form mnm(5)s(2)U34
CQB05_09415	COG0730	response to heat
CQB05_09430	COG0175	sulfate reduction
CQB05_09435	COG2895	sulfate adenylyltransferase (ATP) activity
CQB05_09435	COG0529	Catalyzes the synthesis of activated sulfate
CQB05_09440	COG1146	Ferredoxins are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions
CQB05_09445	COG0492	ferredoxin-NADP+ reductase activity
CQB05_09490	COG0351	phosphomethylpyrimidine kinase
CQB05_09505	COG2022	thiamine diphosphate biosynthetic process
CQB05_09520	COG1250	3-hydroxyacyl-CoA dehydrogenase
CQB05_09525	COG1024	Enoyl-CoA hydratase
CQB05_09540	COG1960	acyl-CoA dehydrogenase activity
CQB05_09555	COG1619	proteins homologs of microcin C7 resistance protein MccF
CQB05_09580	COG0826	peptidase U32
CQB05_09590	COG1506	peptidase
CQB05_09590	COG0823	Involved in the tonB-independent uptake of proteins
CQB05_09590	COG4946	Tricorn protease homolog
CQB05_09600	COG1262	PFAM Formylglycine-generating sulfatase enzyme
CQB05_09605	COG4301	Catalyzes the SAM-dependent triple methylation of the alpha-amino group of histidine to form hercynine, a step in the biosynthesis pathway of ergothioneine
CQB05_09620	COG3047	cAMP biosynthetic process
CQB05_09625	COG2354	Protein conserved in bacteria
CQB05_09630	COG3300	MHYT domain
CQB05_09630	COG5001	Diguanylate cyclase
CQB05_09645	COG0047	phosphoribosylformylglycinamidine synthase activity
CQB05_09645	COG0046	Part of the phosphoribosylformylglycinamidine synthase complex involved in the purines biosynthetic pathway. Catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to yield formylglycinamidine ribonucleotide (FGAM) and glutamate. The FGAM synthase complex is composed of three subunits. PurQ produces an ammonia molecule by converting glutamine to glutamate. PurL transfers the ammonia molecule to FGAR to form FGAM in an ATP-dependent manner. PurS interacts with PurQ and PurL and is thought to assist in the transfer of the ammonia molecule from PurQ to PurL
CQB05_09650	COG0024	Methionine aminopeptidase
CQB05_09655	COG2844	Modifies, by uridylylation and deuridylylation, the PII regulatory proteins (GlnB and homologs), in response to the nitrogen status of the cell that GlnD senses through the glutamine level. Under low glutamine levels, catalyzes the conversion of the PII proteins and UTP to PII-UMP and PPi, while under higher glutamine levels, GlnD hydrolyzes PII-UMP to PII and UMP (deuridylylation). Thus, controls uridylylation state and activity of the PII proteins, and plays an important role in the regulation of nitrogen
CQB05_09660	COG0242	peptide deformylase activity
CQB05_09675	COG2360	Functions in the N-end rule pathway of protein degradation where it conjugates Leu, Phe and, less efficiently, Met from aminoacyl-tRNAs to the N-termini of proteins containing an N-terminal arginine or lysine
CQB05_09680	COG2935	proteasome-mediated ubiquitin-dependent protein catabolic process
CQB05_09685	COG1414	Transcriptional regulator
CQB05_09695	COG0119	Catalyzes the condensation of the acetyl group of acetyl-CoA with 3-methyl-2-oxobutanoate (2-oxoisovalerate) to form 3-carboxy-3-hydroxy-4-methylpentanoate (2-isopropylmalate)
CQB05_09700	COG1183	phosphatidylcholine synthase activity
CQB05_09705	COG0059	Involved in the biosynthesis of branched-chain amino acids (BCAA). Catalyzes an alkyl-migration followed by a ketol- acid reduction of (S)-2-acetolactate (S2AL) to yield (R)-2,3- dihydroxy-isovalerate. In the isomerase reaction, S2AL is rearranged via a Mg-dependent methyl migration to produce 3- hydroxy-3-methyl-2-ketobutyrate (HMKB). In the reductase reaction, this 2-ketoacid undergoes a metal-dependent reduction by NADPH to yield (R)-2,3-dihydroxy-isovalerate
CQB05_09710	COG0440	acetolactate synthase activity
CQB05_09715	COG0028	Belongs to the TPP enzyme family
CQB05_09720	COG1595	DNA-templated transcription, initiation
CQB05_09740	COG0818	Recycling of diacylglycerol produced during the turnover of membrane phospholipid
CQB05_09750	COG0347	Belongs to the P(II) protein family
CQB05_09765	COG0583	DNA-binding transcription factor activity
CQB05_09775	COG3181	Tripartite tricarboxylate transporter family receptor
CQB05_09780	COG0835	chemotaxis
CQB05_09805	COG1252	NADH dehydrogenase
CQB05_09815	COG0376	Bifunctional enzyme with both catalase and broad- spectrum peroxidase activity
CQB05_09845	COG1028	Short-chain dehydrogenase reductase Sdr
CQB05_09865	COG4120	Belongs to the binding-protein-dependent transport system permease family
CQB05_09880	COG0404	The glycine cleavage system catalyzes the degradation of glycine
CQB05_09895	COG0545	Peptidyl-prolyl cis-trans isomerase
CQB05_09905	COG0564	pseudouridine synthase activity
CQB05_09910	COG1028	Short-chain dehydrogenase reductase Sdr
CQB05_09925	COG0589	response to stress
CQB05_09940	COG0318	PFAM AMP-dependent synthetase and ligase
CQB05_09965	COG0260	Presumably involved in the processing and regular turnover of intracellular proteins. Catalyzes the removal of unsubstituted N-terminal amino acids from various peptides
CQB05_09985	COG0583	DNA-binding transcription factor activity
CQB05_09990	COG0436	Aminotransferase
CQB05_10020	COG0559	Belongs to the binding-protein-dependent transport system permease family
CQB05_10025	COG0683	leucine binding
CQB05_10035	COG1960	acyl-CoA dehydrogenase activity
CQB05_10050	COG1028	Short-chain dehydrogenase reductase Sdr
CQB05_10065	COG0596	Alpha beta hydrolase
CQB05_10070	COG2205	protein histidine kinase activity
CQB05_10080	COG3593	DNA synthesis involved in DNA repair
CQB05_10085	COG0210	DNA helicase
CQB05_10125	COG0424	maF-like protein
CQB05_10135	COG1576	Specifically methylates the pseudouridine at position 1915 (m3Psi1915) in 23S rRNA
CQB05_10140	COG0799	negative regulation of ribosome biogenesis
CQB05_10145	COG0408	coproporphyrinogen oxidase activity
CQB05_10150	COG0151	Belongs to the GarS family
CQB05_10155	COG0217	transcriptional regulatory protein
CQB05_10160	COG0433	COG0433 Predicted ATPase
CQB05_10185	COG0277	FAD linked oxidase domain protein
CQB05_10190	COG0015	Belongs to the lyase 1 family. Adenylosuccinate lyase subfamily
CQB05_10215	COG0625	glutathione transferase activity
CQB05_10230	COG0035	Catalyzes the conversion of uracil and 5-phospho-alpha- D-ribose 1-diphosphate (PRPP) to UMP and diphosphate
CQB05_10245	COG0402	S-adenosylhomocysteine deaminase activity
CQB05_10280	COG0484	heat shock protein binding
CQB05_10290	COG1012	belongs to the aldehyde dehydrogenase family
CQB05_10310	COG3284	Transcriptional regulator
CQB05_10320	COG2925	Exonuclease
CQB05_10330	COG0542	response to heat
CQB05_10335	COG2127	Involved in the modulation of the specificity of the ClpAP-mediated ATP-dependent protein degradation
CQB05_10350	COG1199	ATP-dependent helicase activity
CQB05_10365	COG1485	Reduces the stability of FtsZ polymers in the presence of ATP
CQB05_10370	COG1249	Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family
CQB05_10375	COG0508	dehydrogenase complex catalyzes the overall conversion of
CQB05_10380	COG0567	Dehydrogenase, E1 component
CQB05_10385	COG0628	permease
CQB05_10390	COG5002	protein histidine kinase activity
CQB05_10390	COG3447	MASE1 domain protein
CQB05_10390	COG5001	Diguanylate cyclase
CQB05_10395	COG4172	Belongs to the ABC transporter superfamily
CQB05_10400	COG4239	(ABC) transporter, permease
CQB05_10405	COG4174	ABC transporter (Permease)
CQB05_10410	COG4166	transmembrane transport
CQB05_10420	COG2335	COG2335, Secreted and surface protein containing fasciclin-like repeats
CQB05_10425	COG1982	Orn Lys Arg decarboxylase major
CQB05_10525	COG2227	3-demethylubiquinone-9 3-O-methyltransferase activity
CQB05_10540	COG1932	Catalyzes the reversible conversion of 3- phosphohydroxypyruvate to phosphoserine and of 3-hydroxy-2-oxo-4- phosphonooxybutanoate to phosphohydroxythreonine
CQB05_10550	COG0287	Prephenate dehydrogenase
CQB05_10555	COG0128	3-phosphoshikimate 1-carboxyvinyltransferase activity
CQB05_10565	COG0776	regulation of translation
CQB05_10575	COG2956	Modulates cellular lipopolysaccharide (LPS) levels by regulating LpxC, which is involved in lipid A biosynthesis. May act by modulating the proteolytic activity of FtsH towards LpxC. May also coordinate assembly of proteins involved in LPS synthesis at the plasma membrane
CQB05_10580	COG2111	Na H antiporter
CQB05_10580	COG1009	NADH ubiquinone oxidoreductase subunit 5 chain L Multisubunit Na H antiporter, MnhA subunit
CQB05_10585	COG1006	Multisubunit Na H antiporter MnhC subunit
CQB05_10590	COG0651	ATP synthesis coupled electron transport
CQB05_10600	COG2212	antiporter activity
CQB05_10635	COG0239	Important for reducing fluoride concentration in the cell, thus reducing its toxicity
CQB05_10655	COG1322	Protein conserved in bacteria
CQB05_10660	COG1052	Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family
CQB05_10665	COG1488	Catalyzes the synthesis of beta-nicotinate D- ribonucleotide from nicotinate and 5-phospho-D-ribose 1-phosphate at the expense of ATP
CQB05_10670	COG0405	Gamma-glutamyltransferase
CQB05_10710	COG3193	protein, possibly involved in utilization of glycolate and propanediol
CQB05_10715	COG0670	Belongs to the BI1 family
CQB05_10725	COG2265	Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family
CQB05_10740	COG3905	.,Oxidizes proline to glutamate for use as a carbon and nitrogen source
CQB05_10740	COG4230	.,Oxidizes proline to glutamate for use as a carbon and nitrogen source
CQB05_10740	COG0506	proline dehydrogenase activity
CQB05_10750	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
CQB05_10760	COG4559	Part of the ABC transporter complex HmuTUV involved in hemin import. Responsible for energy coupling to the transport system
CQB05_10765	COG4774	siderophore transport
CQB05_10800	COG0494	nUDIX hydrolase
CQB05_10805	COG1278	Cold shock
CQB05_10820	COG0492	ferredoxin-NADP+ reductase activity
CQB05_10825	COG2226	methyltransferase
CQB05_10855	COG3209	COG3209 Rhs family protein
CQB05_10865	COG3501	Rhs element vgr protein
CQB05_10880	COG1028	Short-chain dehydrogenase reductase Sdr
CQB05_10890	COG0583	DNA-binding transcription factor activity
CQB05_10925	COG0286	site-specific DNA-methyltransferase (adenine-specific) activity
CQB05_10965	COG0582	viral genome integration into host DNA
CQB05_10970	COG0518	GMP synthase (glutamine-hydrolyzing) activity
CQB05_10970	COG0519	Catalyzes the synthesis of GMP from XMP
CQB05_10995	COG2914	Belongs to the UPF0125 (RnfH) family
CQB05_11005	COG0691	Required for rescue of stalled ribosomes mediated by trans-translation. Binds to transfer-messenger RNA (tmRNA), required for stable association of tmRNA with ribosomes. tmRNA and SmpB together mimic tRNA shape, replacing the anticodon stem-loop with SmpB. tmRNA is encoded by the ssrA gene
CQB05_11025	COG1024	Enoyl-CoA hydratase
CQB05_11040	COG0130	Responsible for synthesis of pseudouridine from uracil- 55 in the psi GC loop of transfer RNAs
CQB05_11045	COG0858	One of several proteins that assist in the late maturation steps of the functional core of the 30S ribosomal subunit. Associates with free 30S ribosomal subunits (but not with 30S subunits that are part of 70S ribosomes or polysomes). Required for efficient processing of 16S rRNA. May interact with the 5'-terminal helix region of 16S rRNA
CQB05_11050	COG0532	One of the essential components for the initiation of protein synthesis. Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex
CQB05_11055	COG0195	Participates in both transcription termination and antitermination
CQB05_11060	COG0779	Required for maturation of 30S ribosomal subunits
CQB05_11070	COG1529	Aldehyde oxidase and xanthine dehydrogenase
CQB05_11070	COG2010	Cytochrome c
CQB05_11135	COG2423	ornithine cyclodeaminase activity
CQB05_11155	COG1179	involved in molybdopterin and THIamine biosynthesis family 1
CQB05_11165	COG2885	chlorophyll binding
CQB05_11170	COG0823	Involved in the tonB-independent uptake of proteins
CQB05_11175	COG1132	(ABC) transporter
CQB05_11185	COG0084	hydrolase, TatD family'
CQB05_11200	COG0125	Phosphorylation of dTMP to form dTDP in both de novo and salvage pathways of dTTP synthesis
CQB05_11205	COG1559	Functions as a peptidoglycan terminase that cleaves nascent peptidoglycan strands endolytically to terminate their elongation
CQB05_11230	COG1454	alcohol dehydrogenase
CQB05_11245	COG2183	response to ionizing radiation
CQB05_11270	COG2814	Major facilitator Superfamily
CQB05_11275	COG2814	Major facilitator Superfamily
CQB05_11315	COG0008	Catalyzes the attachment of glutamate to tRNA(Glu) in a two-step reaction glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu)
CQB05_11330	COG1286	toxin biosynthetic process
CQB05_11340	COG0285	dihydrofolate synthase activity
CQB05_11345	COG1393	Belongs to the ArsC family
CQB05_11355	COG3123	guanosine phosphorylase activity
CQB05_11360	COG0137	argininosuccinate synthase activity
CQB05_11370	COG1666	GTP binding
CQB05_11375	COG3577	Aspartyl protease
CQB05_11385	COG0344	acyl-phosphate glycerol-3-phosphate acyltransferase activity
CQB05_11390	COG2606	Belongs to the prolyl-tRNA editing family. YbaK EbsC subfamily
CQB05_11395	COG0667	Aldo Keto reductase
CQB05_11400	COG0266	class I DNA-(apurinic or apyrimidinic site) endonuclease activity
CQB05_11415	COG1195	it is required for DNA replication and normal SOS inducibility. RecF binds preferentially to single-stranded, linear DNA. It also seems to bind ATP
CQB05_11425	COG0308	aminopeptidase N
CQB05_11430	COG0158	D-fructose-1,6-bisphosphate 1-phosphohydrolase class 1
CQB05_11440	COG0583	DNA-binding transcription factor activity
CQB05_11445	COG1960	acyl-CoA dehydrogenase activity
CQB05_11450	COG3181	Tripartite tricarboxylate transporter family receptor
CQB05_11455	COG1804	L-carnitine dehydratase bile acid-inducible protein F
CQB05_11460	COG0566	Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family
CQB05_11465	COG0164	Endonuclease that specifically degrades the RNA of RNA- DNA hybrids
CQB05_11470	COG0763	Condensation of UDP-2,3-diacylglucosamine and 2,3- diacylglucosamine-1-phosphate to form lipid A disaccharide, a precursor of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell
CQB05_11475	COG1043	involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell
CQB05_11480	COG0764	3-hydroxyoctanoyl-[acyl-carrier-protein] dehydratase activity
CQB05_11485	COG1044	Catalyzes the N-acylation of UDP-3-O-acylglucosamine using 3-hydroxyacyl-ACP as the acyl donor. Is involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell
CQB05_11500	COG0750	zinc metalloprotease
CQB05_11505	COG0743	1-deoxy-D-xylulose-5-phosphate reductoisomerase activity
CQB05_11510	COG0575	Belongs to the CDS family
CQB05_11520	COG0233	cytoplasmic translational termination
CQB05_11525	COG0528	UMP kinase activity
CQB05_11530	COG0264	Associates with the EF-Tu.GDP complex and induces the exchange of GDP to GTP. It remains bound to the aminoacyl-tRNA.EF- Tu.GTP complex up to the GTP hydrolysis stage on the ribosome
CQB05_11535	COG0052	Belongs to the universal ribosomal protein uS2 family
CQB05_11570	COG0789	Transcriptional regulator
CQB05_11600	COG2132	Multicopper oxidase
CQB05_11630	COG3191	aminopeptidase activity
CQB05_11645	COG0488	(ABC) transporter
CQB05_11650	COG0355	proton-transporting ATP synthase activity, rotational mechanism
CQB05_11660	COG0513	Belongs to the DEAD box helicase family
CQB05_11670	COG1226	(belongs to the monovalent cation proton antiporter 2 (CPA2) transporter (TC 2.A.37) family)
CQB05_11670	COG4651	solute:proton antiporter activity
CQB05_11750	COG1196	nuclear chromosome segregation
CQB05_12030	COG0760	Chaperone involved in the correct folding and assembly of outer membrane proteins. Recognizes specific patterns of aromatic residues and the orientation of their side chains, which are found more frequently in integral outer membrane proteins. May act in both early periplasmic and late outer membrane-associated steps of protein maturation
CQB05_12235	COG5484	DNA packaging
CQB05_12235	COG3728	DNA packaging
CQB05_12425	COG0776	regulation of translation
CQB05_12435	COG0322	excinuclease ABC activity
CQB05_12455	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
CQB05_12460	COG0601	transmembrane transport
CQB05_12470	COG4172	Belongs to the ABC transporter superfamily
CQB05_12475	COG1446	asparaginase
CQB05_12495	COG0119	Catalyzes the condensation of the acetyl group of acetyl-CoA with 3-methyl-2-oxobutanoate (2-oxoisovalerate) to form 3-carboxy-3-hydroxy-4-methylpentanoate (2-isopropylmalate)
CQB05_12500	COG1804	L-carnitine dehydratase bile acid-inducible protein F
CQB05_12515	COG0231	Involved in peptide bond synthesis. Stimulates efficient translation and peptide-bond synthesis on native or reconstituted 70S ribosomes in vitro. Probably functions indirectly by altering the affinity of the ribosome for aminoacyl-tRNA, thus increasing their reactivity as acceptors for peptidyl transferase
CQB05_12530	COG0621	Catalyzes the methylthiolation of N6- (dimethylallyl)adenosine (i(6)A), leading to the formation of 2- methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine
CQB05_12625	COG1196	nuclear chromosome segregation
CQB05_12775	COG1475	DNA binding
CQB05_12795	COG5394	Polyhydroxyalkanoate synthesis repressor PhaR
CQB05_12805	COG0693	protein deglycase activity
CQB05_12840	COG0317	In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance
CQB05_12850	COG1028	Short-chain dehydrogenase reductase Sdr
CQB05_12860	COG0745	RESPONSE REGULATOR receiver
CQB05_12865	COG2205	protein histidine kinase activity
CQB05_12870	COG0245	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase activity
CQB05_12870	COG1211	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase activity
CQB05_12875	COG1211	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase activity
CQB05_12875	COG0245	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase activity
CQB05_12880	COG1197	Couples transcription and DNA repair by recognizing RNA polymerase (RNAP) stalled at DNA lesions. Mediates ATP-dependent release of RNAP and its truncated transcript from the DNA, and recruitment of nucleotide excision repair machinery to the damaged site
CQB05_12890	COG0627	Serine hydrolase involved in the detoxification of formaldehyde
CQB05_12900	COG0560	Phosphoserine phosphatase
CQB05_12915	COG0583	DNA-binding transcription factor activity
CQB05_12920	COG1959	2 iron, 2 sulfur cluster binding
CQB05_12945	COG0513	Belongs to the DEAD box helicase family
CQB05_12955	COG0667	Aldo Keto reductase
CQB05_12965	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
CQB05_12970	COG0177	DNA repair enzyme that has both DNA N-glycosylase activity and AP-lyase activity. The DNA N-glycosylase activity releases various damaged pyrimidines from DNA by cleaving the N- glycosidic bond, leaving an AP (apurinic apyrimidinic) site. The AP-lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination, leaving a 3'-terminal unsaturated sugar and a product with a terminal 5'-phosphate
CQB05_12985	COG0477	Major facilitator Superfamily
CQB05_12990	COG3039	Transposase
CQB05_13015	COG2038	nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase activity
CQB05_13020	COG1492	cobalamin metabolic process
CQB05_13025	COG1028	Short-chain dehydrogenase reductase Sdr
CQB05_13055	COG1270	Converts cobyric acid to cobinamide by the addition of aminopropanol on the F carboxylic group
CQB05_13060	COG0778	Nitroreductase
CQB05_13065	COG2109	Required for both de novo synthesis of the corrin ring for the assimilation of exogenous corrinoids. Participates in the adenosylation of a variety of incomplete and complete corrinoids
CQB05_13070	COG4559	Part of the ABC transporter complex HmuTUV involved in hemin import. Responsible for energy coupling to the transport system
CQB05_13075	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
CQB05_13090	COG1797	cobyrinic acid a,c-diamide synthase activity
CQB05_13095	COG4206	TonB-dependent receptor
CQB05_13115	COG3437	response regulator, receiver
CQB05_13125	COG0635	Involved in the biosynthesis of porphyrin-containing compound
CQB05_13130	COG0664	- Catabolite gene activator and regulatory subunit of cAMP-dependent protein
CQB05_13165	COG3278	Belongs to the heme-copper respiratory oxidase family
CQB05_13175	COG2217	Heavy metal translocating P-type atpase
CQB05_13185	COG0589	response to stress
CQB05_13195	COG3048	D-serine ammonia-lyase activity
CQB05_13200	COG0318	PFAM AMP-dependent synthetase and ligase
CQB05_13225	COG1802	Transcriptional regulator
CQB05_13230	COG0682	Transfers the N-acyl diglyceride group on what will become the N-terminal cysteine of membrane lipoproteins
CQB05_13245	COG0129	dihydroxy-acid dehydratase activity
CQB05_13255	COG4654	Cytochrome c, class I
CQB05_13275	COG0365	Catalyzes the conversion of acetate into acetyl-CoA (AcCoA), an essential intermediate at the junction of anabolic and catabolic pathways. AcsA undergoes a two-step reaction. In the first half reaction, AcsA combines acetate with ATP to form acetyl-adenylate (AcAMP) intermediate. In the second half reaction, it can then transfer the acetyl group from AcAMP to the sulfhydryl group of CoA, forming the product AcCoA
CQB05_13285	COG4175	Glycine betaine
CQB05_13290	COG4176	ABC-type proline glycine betaine transport system permease component
CQB05_13295	COG2113	Glycine betaine
CQB05_13300	COG2205	protein histidine kinase activity
CQB05_13305	COG0745	RESPONSE REGULATOR receiver
CQB05_13315	COG0114	fumarate hydratase activity
CQB05_13330	COG0796	Provides the (R)-glutamate required for cell wall biosynthesis
CQB05_13340	COG1319	Aerobic-type carbon monoxide dehydrogenase, middle subunit CoxM
CQB05_13345	COG1529	Aldehyde oxidase and xanthine dehydrogenase
CQB05_13350	COG1451	nucleotide metabolic process
CQB05_13415	COG2885	chlorophyll binding
CQB05_13430	COG0631	protein serine/threonine phosphatase activity
CQB05_13460	COG1562	ergosterol biosynthetic process
CQB05_13470	COG0841	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
CQB05_13480	COG0544	peptidyl-prolyl cis-trans isomerase activity
CQB05_13485	COG0740	serine-type endopeptidase activity
CQB05_13490	COG1219	ATP-dependent specificity component of the Clp protease. It directs the protease to specific substrates. Can perform chaperone functions in the absence of ClpP
CQB05_13495	COG0466	ATP-dependent serine protease that mediates the selective degradation of mutant and abnormal proteins as well as certain short-lived regulatory proteins. Required for cellular homeostasis and for survival from DNA damage and developmental changes induced by stress. Degrades polypeptides processively to yield small peptide fragments that are 5 to 10 amino acids long. Binds to DNA in a double-stranded, site-specific manner
CQB05_13520	COG1232	Catalyzes the 6-electron oxidation of protoporphyrinogen-IX to form protoporphyrin-IX
CQB05_13535	COG0277	FAD linked oxidase domain protein
CQB05_13545	COG0207	Catalyzes the reductive methylation of 2'-deoxyuridine- 5'-monophosphate (dUMP) to 2'-deoxythymidine-5'-monophosphate (dTMP) while utilizing 5,10-methylenetetrahydrofolate (mTHF) as the methyl donor and reductant in the reaction, yielding dihydrofolate (DHF) as a by-product. This enzymatic reaction provides an intracellular de novo source of dTMP, an essential precursor for DNA biosynthesis
CQB05_13560	COG0708	Exodeoxyribonuclease III
CQB05_13570	COG2204	response regulator
CQB05_13615	COG1187	pseudouridine synthase activity
CQB05_13645	COG2236	Acts on guanine, xanthine and to a lesser extent hypoxanthine
CQB05_13650	COG0104	Plays an important role in the de novo pathway of purine nucleotide biosynthesis. Catalyzes the first committed step in the biosynthesis of AMP from IMP
CQB05_13655	COG3705	Required for the first step of histidine biosynthesis. May allow the feedback regulation of ATP phosphoribosyltransferase activity by histidine
CQB05_13660	COG0330	HflC and HflK could
CQB05_13665	COG0330	HflC and HflK could
CQB05_13670	COG2262	GTPase that associates with the 50S ribosomal subunit and may have a role during protein synthesis or ribosome biogenesis
CQB05_13675	COG1923	regulation of RNA biosynthetic process
CQB05_13680	COG1160	GTP binding
CQB05_13695	COG0124	histidyl-tRNA synthetase
CQB05_13700	COG0821	Converts 2C-methyl-D-erythritol 2,4-cyclodiphosphate (ME-2,4cPP) into 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate
CQB05_13710	COG3063	Type IV pilus biogenesis stability protein PilW
CQB05_13715	COG0820	rRNA (adenine-C2-)-methyltransferase activity
CQB05_13720	COG0105	UTP biosynthetic process
CQB05_13725	COG1187	pseudouridine synthase activity
CQB05_13730	COG1386	Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpA that pull DNA away from mid-cell into both cell halves
CQB05_13745	COG2518	Catalyzes the methyl esterification of L-isoaspartyl residues in peptides and proteins that result from spontaneous decomposition of normal L-aspartyl and L-asparaginyl residues. It plays a role in the repair and or degradation of damaged proteins
CQB05_13750	COG0496	Nucleotidase that shows phosphatase activity on nucleoside 5'-monophosphates
CQB05_13755	COG3321	synthase
CQB05_13755	COG0604	alcohol dehydrogenase
CQB05_13755	COG1028	Short-chain dehydrogenase reductase Sdr
CQB05_13760	COG0745	RESPONSE REGULATOR receiver
CQB05_13760	COG3706	GGDEF domain
CQB05_13765	COG3540	Alkaline phosphatase
CQB05_13770	COG0405	Gamma-glutamyltransferase
CQB05_13775	COG1638	TRAP-type C4-dicarboxylate transport system periplasmic component
CQB05_13780	COG3300	MHYT domain
CQB05_13780	COG5001	Diguanylate cyclase
CQB05_13785	COG0358	DNA primase activity
CQB05_13790	COG0568	sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released
CQB05_13795	COG0840	transmembrane signaling receptor activity
CQB05_13835	COG4948	Mandelate Racemase Muconate Lactonizing
CQB05_13840	COG1028	Short-chain dehydrogenase reductase Sdr
CQB05_13855	COG0329	Catalyzes the condensation of (S)-aspartate-beta- semialdehyde (S)-ASA and pyruvate to 4-hydroxy- tetrahydrodipicolinate (HTPA)
CQB05_13860	COG0583	DNA-binding transcription factor activity
CQB05_13875	COG1804	L-carnitine dehydratase bile acid-inducible protein F
CQB05_13915	COG1806	Bifunctional serine threonine kinase and phosphorylase involved in the regulation of the
CQB05_13940	COG3634	alkyl hydroperoxide reductase activity
CQB05_13985	COG4774	siderophore transport
CQB05_14010	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
CQB05_14025	COG4628	conserved protein (DUF2132)
CQB05_14035	COG0499	May play a key role in the regulation of the intracellular concentration of adenosylhomocysteine
CQB05_14055	COG2308	Evidence 4 Homologs of previously reported genes of
CQB05_14095	COG2240	Pyridoxal kinase involved in the salvage pathway of pyridoxal 5'-phosphate (PLP). Catalyzes the phosphorylation of pyridoxal to PLP
CQB05_14100	COG0840	transmembrane signaling receptor activity
CQB05_14105	COG0840	transmembrane signaling receptor activity
CQB05_14115	COG0741	lytic transglycosylase activity
CQB05_14120	COG0187	DNA topoisomerase II activity
CQB05_14135	COG0329	Catalyzes the condensation of (S)-aspartate-beta- semialdehyde (S)-ASA and pyruvate to 4-hydroxy- tetrahydrodipicolinate (HTPA)
CQB05_14140	COG3317	Gram-negative-bacterium-type cell outer membrane assembly
CQB05_14145	COG1235	May be involved in the transport of PQQ or its precursor to the periplasm
CQB05_14160	COG2850	peptidyl-arginine hydroxylation
CQB05_14165	COG1047	Peptidyl-prolyl cis-trans
CQB05_14175	COG0756	dUTP diphosphatase activity
CQB05_14180	COG0452	Catalyzes two steps in the biosynthesis of coenzyme A. In the first step cysteine is conjugated to 4'-phosphopantothenate to form 4-phosphopantothenoylcysteine, in the latter compound is decarboxylated to form 4'-phosphopantotheine
CQB05_14185	COG0504	CTP synthase activity
CQB05_14190	COG2877	3-deoxy-8-phosphooctulonate synthase activity
CQB05_14210	COG0148	phosphopyruvate hydratase activity
CQB05_14215	COG2919	Essential cell division protein. May link together the upstream cell division proteins, which are predominantly cytoplasmic, with the downstream cell division proteins, which are predominantly periplasmic
CQB05_14225	COG1281	Redox regulated molecular chaperone. Protects both thermally unfolding and oxidatively damaged proteins from irreversible aggregation. Plays an important role in the bacterial defense system toward oxidative stress
CQB05_14235	COG2833	Protein of unknown function (DUF455)
CQB05_14240	COG3434	signal transduction protein containing EAL and modified HD-GYP domains
CQB05_14245	COG3434	signal transduction protein containing EAL and modified HD-GYP domains
CQB05_14250	COG3181	Tripartite tricarboxylate transporter family receptor
CQB05_14255	COG4974	Belongs to the 'phage' integrase family
CQB05_14260	COG3181	Tripartite tricarboxylate transporter family receptor
CQB05_14285	COG1600	Catalyzes the conversion of epoxyqueuosine (oQ) to queuosine (Q), which is a hypermodified base found in the wobble positions of tRNA(Asp), tRNA(Asn), tRNA(His) and tRNA(Tyr)
CQB05_14290	COG0802	atpase or kinase
CQB05_14295	COG0860	N-Acetylmuramoyl-L-alanine amidase
CQB05_14310	COG2021	Transfers an acetyl group from acetyl-CoA to L- homoserine, forming acetyl-L-homoserine
CQB05_14315	COG0586	Pfam SNARE associated Golgi protein
CQB05_14330	COG0584	glycerophosphoryl diester phosphodiesterase
CQB05_14335	COG2267	carboxylic ester hydrolase activity
CQB05_14340	COG1733	regulation of RNA biosynthetic process
CQB05_14345	COG0702	epimerase
CQB05_14350	COG0324	Catalyzes the transfer of a dimethylallyl group onto the adenine at position 37 in tRNAs that read codons beginning with uridine, leading to the formation of N6-(dimethylallyl)adenosine (i(6)A)
CQB05_14355	COG1136	(ABC) transporter
CQB05_14360	COG0071	Belongs to the small heat shock protein (HSP20) family
CQB05_14380	COG0463	Glycosyl transferase, family 2
CQB05_14380	COG0457	Tetratricopeptide repeat
CQB05_14400	COG0559	Belongs to the binding-protein-dependent transport system permease family
CQB05_14425	COG1132	(ABC) transporter
CQB05_14455	COG0713	ATP synthesis coupled electron transport
CQB05_14465	COG1143	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient
CQB05_14470	COG1005	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient. This subunit may bind ubiquinone
CQB05_14475	COG1034	ATP synthesis coupled electron transport
CQB05_14480	COG1894	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain
CQB05_14485	COG1905	PFAM NADH dehydrogenase (ubiquinone) 24 kDa subunit
CQB05_14490	COG0649	NAD binding
CQB05_14495	COG0852	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient
CQB05_14500	COG0377	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient
CQB05_14505	COG0838	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient
CQB05_14520	COG0149	triose-phosphate isomerase activity
CQB05_14530	COG1185	polyribonucleotide nucleotidyltransferase activity
CQB05_14535	COG0184	Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome
CQB05_14555	COG0042	Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines
CQB05_14565	COG4123	Specifically methylates the adenine in position 37 of tRNA(1)(Val) (anticodon cmo5UAC)
CQB05_14585	COG0542	response to heat
CQB05_14590	COG0314	molybdopterin synthase activity
CQB05_14615	COG0329	Catalyzes the condensation of (S)-aspartate-beta- semialdehyde (S)-ASA and pyruvate to 4-hydroxy- tetrahydrodipicolinate (HTPA)
CQB05_14620	COG1977	Involved in sulfur transfer in the conversion of molybdopterin precursor Z to molybdopterin
CQB05_14625	COG0303	'Molybdopterin
CQB05_14630	COG1763	Mo-molybdopterin cofactor biosynthetic process
CQB05_14645	COG0436	Aminotransferase
CQB05_14655	COG1225	Alkyl hydroperoxide reductase Thiol specific antioxidant Mal allergen
CQB05_14660	COG1875	ATPase related to phosphate starvation-inducible protein PhoH
CQB05_14670	COG0305	Participates in initiation and elongation during chromosome replication
CQB05_14675	COG0359	binds to the 23S rRNA
CQB05_14680	COG0238	Binds as a heterodimer with protein S6 to the central domain of the 16S rRNA, where it helps stabilize the platform of the 30S subunit
CQB05_14690	COG0360	Binds together with S18 to 16S ribosomal RNA
CQB05_14700	COG0443	Heat shock 70 kDa protein
CQB05_14705	COG0484	heat shock protein binding
CQB05_14715	COG0065	Catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate, via the formation of 2-isopropylmaleate
CQB05_14725	COG0066	3-isopropylmalate dehydratase activity
CQB05_14730	COG0473	3-isopropylmalate dehydrogenase activity
CQB05_14740	COG0136	Catalyzes the NADPH-dependent formation of L-aspartate- semialdehyde (L-ASA) by the reductive dephosphorylation of L- aspartyl-4-phosphate
CQB05_14750	COG0101	tRNA pseudouridine synthase activity
CQB05_14755	COG0135	phosphoribosylanthranilate isomerase activity
CQB05_14760	COG0133	tryptophan synthase activity
CQB05_14765	COG0159	tryptophan synthase activity
CQB05_14770	COG0777	Component of the acetyl coenzyme A carboxylase (ACC) complex. Biotin carboxylase (BC) catalyzes the carboxylation of biotin on its carrier protein (BCCP) and then the CO(2) group is transferred by the transcarboxylase to acetyl-CoA to form malonyl- CoA
CQB05_14775	COG0762	integral membrane protein
CQB05_14790	COG2148	undecaprenyl-phosphate glucose phosphotransferase activity
CQB05_14815	COG1190	Belongs to the class-II aminoacyl-tRNA synthetase family
CQB05_14830	COG3064	Membrane
CQB05_14845	COG0854	Catalyzes the complicated ring closure reaction between the two acyclic compounds 1-deoxy-D-xylulose-5-phosphate (DXP) and 3-amino-2-oxopropyl phosphate (1-amino-acetone-3-phosphate or AAP) to form pyridoxine 5'-phosphate (PNP) and inorganic phosphate
CQB05_14850	COG1381	Involved in DNA repair and RecF pathway recombination
CQB05_14855	COG1159	An essential GTPase that binds both GDP and GTP, with rapid nucleotide exchange. Plays a role in 16S rRNA processing and 30S ribosomal subunit biogenesis and possibly also in cell cycle regulation and energy metabolism
CQB05_14860	COG0571	ribonuclease III activity
CQB05_14870	COG0681	Belongs to the peptidase S26 family
CQB05_14880	COG0265	Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain
CQB05_14905	COG0304	beta-ketoacyl-acyl-carrier-protein synthase II activity
CQB05_14910	COG0236	Carrier of the growing fatty acid chain in fatty acid biosynthesis
CQB05_14915	COG1028	Short-chain dehydrogenase reductase Sdr
CQB05_14920	COG0331	[acyl-carrier-protein] S-malonyltransferase activity
CQB05_14925	COG0332	Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. Catalyzes the first condensation reaction which initiates fatty acid synthesis and may therefore play a role in governing the total rate of fatty acid production. Possesses both acetoacetyl-ACP synthase and acetyl transacylase activities. Its substrate specificity determines the biosynthesis of branched- chain and or straight-chain of fatty acids
CQB05_14930	COG0416	fatty acid biosynthetic process
CQB05_14935	COG0333	Belongs to the bacterial ribosomal protein bL32 family
CQB05_14940	COG1399	metal-binding, possibly nucleic acid-binding protein
CQB05_14945	COG0424	maF-like protein
CQB05_14950	COG0313	Catalyzes the 2'-O-methylation of the ribose of cytidine 1402 (C1402) in 16S rRNA
CQB05_14955	COG3004	Na( ) H( ) antiporter that extrudes sodium in exchange for external protons
CQB05_14955	COG0616	signal peptide processing
CQB05_14980	COG1530	ribonuclease E activity
CQB05_14985	COG3022	response to hydroperoxide
CQB05_14995	COG0780	Catalyzes the NADPH-dependent reduction of 7-cyano-7- deazaguanine (preQ0) to 7-aminomethyl-7-deazaguanine (preQ1)
CQB05_14995	COG2904	Catalyzes the NADPH-dependent reduction of 7-cyano-7- deazaguanine (preQ0) to 7-aminomethyl-7-deazaguanine (preQ1)
CQB05_15000	COG2912	Transglutaminase-like superfamily
CQB05_15005	COG0728	peptidoglycan biosynthetic process
CQB05_15010	COG0268	Binds directly to 16S ribosomal RNA
CQB05_15015	COG0579	oxidoreductase
CQB05_15025	COG4992	N2-acetyl-L-ornithine:2-oxoglutarate 5-aminotransferase activity
CQB05_15030	COG0078	Reversibly catalyzes the transfer of the carbamoyl group from carbamoyl phosphate (CP) to the N(epsilon) atom of ornithine (ORN) to produce L-citrulline
CQB05_15060	COG1522	sequence-specific DNA binding
CQB05_15065	COG1878	Catalyzes the hydrolysis of N-formyl-L-kynurenine to L- kynurenine, the second step in the kynurenine pathway of tryptophan degradation
CQB05_15075	COG3483	tryptophan 2,3-dioxygenase activity
CQB05_15100	COG2916	Histone family protein nucleoid-structuring protein H-NS
CQB05_15105	COG0639	Hydrolyzes diadenosine 5',5'''-P1,P4-tetraphosphate to yield ADP
CQB05_15110	COG0513	Belongs to the DEAD box helicase family
CQB05_15115	COG2321	neutral zinc metallopeptidase
CQB05_15145	COG1052	Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family
CQB05_15160	COG1816	Catalyzes the hydrolytic deamination of adenine to hypoxanthine. Plays an important role in the purine salvage pathway and in nitrogen catabolism
CQB05_15190	COG1129	ABC transporter
CQB05_15220	COG5001	Diguanylate cyclase
CQB05_15220	COG3447	MASE1 domain protein
CQB05_15220	COG5002	protein histidine kinase activity
CQB05_15240	COG0251	oxidation-reduction process
CQB05_15285	COG0405	Gamma-glutamyltransferase
CQB05_15295	COG2186	Transcriptional regulator
CQB05_15310	COG0624	Catalyzes the hydrolysis of N-succinyl-L,L- diaminopimelic acid (SDAP), forming succinate and LL-2,6- diaminoheptanedioate (DAP), an intermediate involved in the bacterial biosynthesis of lysine and meso-diaminopimelic acid, an essential component of bacterial cell walls
CQB05_15350	COG1301	dicarboxylic acid transport
CQB05_15355	COG0840	transmembrane signaling receptor activity
CQB05_15360	COG2186	Transcriptional regulator
CQB05_15365	COG1953	Uracil, thiamine, allantoin
CQB05_15385	COG0280	phosphate acetyltransferase
CQB05_15385	COG0281	malic enzyme
CQB05_15400	COG1116	anion transmembrane transporter activity
CQB05_15405	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
CQB05_15430	COG0361	One of the essential components for the initiation of protein synthesis. Stabilizes the binding of IF-2 and IF-3 on the 30S subunit to which N-formylmethionyl-tRNA(fMet) subsequently binds. Helps modulate mRNA selection, yielding the 30S pre- initiation complex (PIC). Upon addition of the 50S ribosomal subunit IF-1, IF-2 and IF-3 are released leaving the mature 70S translation initation complex
CQB05_15450	COG0829	nickel cation binding
CQB05_15455	COG0840	transmembrane signaling receptor activity
CQB05_15460	COG1028	Short-chain dehydrogenase reductase Sdr
CQB05_15505	COG0421	Catalyzes the irreversible transfer of a propylamine group from the amino donor S-adenosylmethioninamine (decarboxy- AdoMet) to putrescine (1,4-diaminobutane) to yield spermidine
CQB05_15515	COG0084	hydrolase, TatD family'
CQB05_15520	COG0265	Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain
CQB05_15525	COG0714	Associated with various cellular activities
CQB05_15545	COG0327	Belongs to the GTP cyclohydrolase I type 2 NIF3 family
CQB05_15565	COG0805	protein transport
CQB05_15570	COG1826	Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin-arginine motif in their signal peptide across membranes
CQB05_15575	COG1826	Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin-arginine motif in their signal peptide across membranes
CQB05_15580	COG0537	adenosine 5'-monophosphoramidase activity
CQB05_15595	COG0140	phosphoribosyl-ATP diphosphatase activity
CQB05_15600	COG0139	Catalyzes the hydrolysis of the adenine ring of phosphoribosyl-AMP
CQB05_15605	COG0107	imidazoleglycerol-phosphate synthase activity
CQB05_15615	COG1301	dicarboxylic acid transport
CQB05_15620	COG1087	Belongs to the NAD(P)-dependent epimerase dehydratase family
CQB05_15650	COG0438	transferase activity, transferring glycosyl groups
CQB05_15670	COG0106	1-(5-phosphoribosyl)-5- 5-phosphoribosylamino)methylideneamino imidazole-4-carboxamide isomerase
CQB05_15675	COG0118	IGPS catalyzes the conversion of PRFAR and glutamine to IGP, AICAR and glutamate. The HisH subunit provides the glutamine amidotransferase activity that produces the ammonia necessary to HisF for the synthesis of IGP and AICAR
CQB05_15680	COG0131	Imidazoleglycerol-phosphate dehydratase
CQB05_15685	COG0079	Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily
CQB05_15720	COG0040	Catalyzes the condensation of ATP and 5-phosphoribose 1- diphosphate to form N'-(5'-phosphoribosyl)-ATP (PR-ATP). Has a crucial role in the pathway because the rate of histidine biosynthesis seems to be controlled primarily by regulation of hisG enzymatic activity
CQB05_15725	COG0766	Cell wall formation. Adds enolpyruvyl to UDP-N- acetylglucosamine
CQB05_15730	COG5007	Belongs to the BolA IbaG family
CQB05_15735	COG0842	Transport permease protein
CQB05_15740	COG1131	(ABC) transporter
CQB05_15760	COG2853	Lipoprotein
CQB05_15765	COG1463	ABC-type transport system involved in resistance to organic solvents, periplasmic component
CQB05_15770	COG0767	ABC-type transport system involved in resistance to organic solvents, permease component
CQB05_15775	COG1127	ABC transporter
CQB05_15780	COG1126	abc transporter atp-binding protein
CQB05_15785	COG0765	amino acid transport
CQB05_15790	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
CQB05_15800	COG0067	glutamate synthase
CQB05_15800	COG0069	glutamate synthase activity
CQB05_15800	COG0070	glutamate synthase
CQB05_15820	COG0232	Belongs to the dGTPase family. Type 2 subfamily
CQB05_15825	COG0337	Catalyzes the conversion of 3-deoxy-D-arabino- heptulosonate 7-phosphate (DAHP) to dehydroquinate (DHQ)
CQB05_15830	COG0703	Catalyzes the specific phosphorylation of the 3-hydroxyl group of shikimic acid using ATP as a cosubstrate
CQB05_15870	COG1965	Belongs to the frataxin family
CQB05_15900	COG2717	Part of the MsrPQ system that repairs oxidized periplasmic proteins containing methionine sulfoxide residues (Met-O), using respiratory chain electrons. Thus protects these proteins from oxidative-stress damage caused by reactive species of oxygen and chlorine generated by the host defense mechanisms. MsrPQ is essential for the maintenance of envelope integrity under bleach stress, rescuing a wide series of structurally unrelated periplasmic proteins from methionine oxidation. MsrQ provides electrons for reduction to the reductase catalytic subunit MsrP, using the quinone pool of the respiratory chain
CQB05_15905	COG2041	Part of the MsrPQ system that repairs oxidized periplasmic proteins containing methionine sulfoxide residues (Met-O), using respiratory chain electrons. Thus protects these proteins from oxidative-stress damage caused by reactive species of oxygen and chlorine generated by the host defense mechanisms. MsrPQ is essential for the maintenance of envelope integrity under bleach stress, rescuing a wide series of structurally unrelated periplasmic proteins from methionine oxidation. The catalytic subunit MsrP is non-stereospecific, being able to reduce both (R-) and (S-) diastereoisomers of methionine sulfoxide
CQB05_15910	COG0755	Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes
CQB05_15925	COG0218	Necessary for normal cell division and for the maintenance of normal septation
CQB05_15935	COG1560	Kdo2-lipid A biosynthetic process
CQB05_15945	COG0192	Catalyzes the formation of S-adenosylmethionine (AdoMet) from methionine and ATP. The overall synthetic reaction is composed of two sequential steps, AdoMet formation and the subsequent tripolyphosphate hydrolysis which occurs prior to release of AdoMet from the enzyme
CQB05_15960	COG1488	Catalyzes the synthesis of beta-nicotinate D- ribonucleotide from nicotinate and 5-phospho-D-ribose 1-phosphate at the expense of ATP
CQB05_15965	COG0171	NAD+ synthase (glutamine-hydrolyzing) activity
CQB05_15965	COG0388	Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source
CQB05_16000	COG1953	Uracil, thiamine, allantoin
CQB05_16010	COG0493	'glutamate synthase
CQB05_16015	COG1309	transcriptional regulator
CQB05_16025	COG1216	Glycosyl transferase, family 2
CQB05_16040	COG0367	asparagine synthase
CQB05_16045	COG0438	transferase activity, transferring glycosyl groups
CQB05_16050	COG0367	asparagine synthase
CQB05_16060	COG0438	transferase activity, transferring glycosyl groups
CQB05_16065	COG2226	methyltransferase
CQB05_16100	COG0677	UDP-N-acetyl-D-mannosamine dehydrogenase activity
CQB05_16120	COG0234	Binds to Cpn60 in the presence of Mg-ATP and suppresses the ATPase activity of the latter
CQB05_16125	COG0459	protein refolding
CQB05_16130	COG0166	Belongs to the GPI family
CQB05_16135	COG0176	Transaldolase is important for the balance of metabolites in the pentose-phosphate pathway
CQB05_16140	COG0364	Catalyzes the oxidation of glucose 6-phosphate to 6- phosphogluconolactone
CQB05_16150	COG0840	transmembrane signaling receptor activity
CQB05_16155	COG4608	Belongs to the ABC transporter superfamily
CQB05_16160	COG0444	Belongs to the ABC transporter superfamily
CQB05_16165	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
CQB05_16170	COG0747	negative chemotaxis
CQB05_16175	COG1473	amidohydrolase
CQB05_16180	COG0601	transmembrane transport
CQB05_16195	COG2941	Oxygenase that introduces the hydroxyl group at carbon five of 2-nonaprenyl-3-methyl-6-methoxy-1,4-benzoquinol resulting in the formation of 2-nonaprenyl-3-methyl-5-hydroxy-6-methoxy-1,4- benzoquinol
CQB05_16200	COG1765	OsmC-like protein
CQB05_16210	COG0368	Joins adenosylcobinamide-GDP and alpha-ribazole to generate adenosylcobalamin (Ado-cobalamin). Also synthesizes adenosylcobalamin 5'-phosphate from adenosylcobinamide-GDP and alpha-ribazole 5'-phosphate
CQB05_16230	COG4970	Tfp pilus assembly protein FimT
CQB05_16280	COG1178	ABC-type Fe3 transport system permease component
CQB05_16285	COG3842	ATPase activity
CQB05_16300	COG0540	Belongs to the ATCase OTCase family
CQB05_16305	COG2065	Also displays a weak uracil phosphoribosyltransferase activity which is not physiologically significant
CQB05_16310	COG0816	Could be a nuclease involved in processing of the 5'-end of pre-16S rRNA
CQB05_16315	COG1678	Uncharacterized ACR, COG1678
CQB05_16320	COG0415	Belongs to the DNA photolyase family
CQB05_16325	COG2198	Histidine kinase
CQB05_16325	COG0643	Histidine kinase
CQB05_16330	COG0840	transmembrane signaling receptor activity
CQB05_16335	COG0835	chemotaxis
CQB05_16350	COG1773	rubredoxin
CQB05_16355	COG0819	Catalyzes an amino-pyrimidine hydrolysis reaction at the C5' of the pyrimidine moiety of thiamine compounds, a reaction that is part of a thiamine salvage pathway
CQB05_16355	COG0351	phosphomethylpyrimidine kinase
CQB05_16355	COG0352	thiamine-phosphate diphosphorylase activity
CQB05_16360	COG0001	glutamate-1-semialdehyde 2,1-aminomutase activity
CQB05_16370	COG0138	bifunctional purine biosynthesis protein purh
CQB05_16380	COG0042	Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines
CQB05_16385	COG3706	GGDEF domain
CQB05_16390	COG1238	metal cluster binding
CQB05_16400	COG1125	glycine betaine transport
CQB05_16400	COG0517	IMP dehydrogenase activity
CQB05_16415	COG0012	GTP binding
CQB05_16420	COG3217	Mosc domain protein beta barrel domain protein
CQB05_16420	COG0633	Ferredoxin
CQB05_16425	COG0654	COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases
CQB05_16430	COG1651	Required for disulfide bond formation in some periplasmic proteins. Acts by transferring its disulfide bond to other proteins and is reduced in the process
CQB05_16440	COG1024	Enoyl-CoA hydratase
CQB05_16445	COG3829	transcription factor binding
CQB05_16450	COG0431	NADPH-dependent FMN reductase
CQB05_16475	COG0621	Catalyzes the methylthiolation of N6- (dimethylallyl)adenosine (i(6)A), leading to the formation of 2- methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine
CQB05_16480	COG2205	protein histidine kinase activity
CQB05_16490	COG2204	response regulator
CQB05_16500	COG0541	Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Binds to the hydrophobic signal sequence of the ribosome-nascent chain (RNC) as it emerges from the ribosomes. The SRP-RNC complex is then targeted to the cytoplasmic membrane where it interacts with the SRP receptor FtsY
CQB05_16535	COG0208	Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides
CQB05_16555	COG2264	protein methyltransferase activity
CQB05_16560	COG0439	Biotin carboxylase
CQB05_16565	COG0511	ligase activity, forming carbon-carbon bonds
CQB05_16570	COG0526	COG0526, thiol-disulfide isomerase and thioredoxins
CQB05_16580	COG0773	UDP-N-acetylmuramate-L-alanine ligase activity
CQB05_16590	COG0722	Stereospecific condensation of phosphoenolpyruvate (PEP) and D-erythrose-4-phosphate (E4P) giving rise to 3-deoxy-D- arabino-heptulosonate-7-phosphate (DAHP)
CQB05_16600	COG0312	modulator of DNA gyrase
CQB05_16605	COG0154	amidase activity
CQB05_16615	COG0772	Belongs to the SEDS family
CQB05_16620	COG3150	esterase
CQB05_16630	COG0557	exoribonuclease II activity
CQB05_16640	COG0169	Involved in the biosynthesis of the chorismate, which leads to the biosynthesis of aromatic amino acids. Catalyzes the reversible NADPH linked reduction of 3-dehydroshikimate (DHSA) to yield shikimate (SA)
CQB05_16645	COG0744	Peptidoglycan polymerase that catalyzes glycan chain elongation from lipid-linked precursors
CQB05_16650	COG1414	Transcriptional regulator
CQB05_16675	COG0575	Belongs to the CDS family
CQB05_16680	COG0817	Nuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves the cruciform structure in supercoiled DNA by nicking to strands with the same polarity at sites symmetrically opposed at the junction in the homologous arms and leaves a 5'-terminal phosphate and a 3'-terminal hydroxyl group
CQB05_16695	COG0840	transmembrane signaling receptor activity
CQB05_16700	COG0422	Catalyzes the synthesis of the hydroxymethylpyrimidine phosphate (HMP-P) moiety of thiamine from aminoimidazole ribotide (AIR) in a radical S-adenosyl-L-methionine (SAM)-dependent reaction
CQB05_16705	COG0774	UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase activity
CQB05_16710	COG0206	Essential cell division protein that forms a contractile ring structure (Z ring) at the future cell division site. The regulation of the ring assembly controls the timing and the location of cell division. One of the functions of the FtsZ ring is to recruit other cell division proteins to the septum to produce a new cell wall between the dividing cells. Binds GTP and shows GTPase activity
CQB05_16720	COG1589	Essential cell division protein. May link together the upstream cell division proteins, which are predominantly cytoplasmic, with the downstream cell division proteins, which are predominantly periplasmic. May control correct divisome assembly
CQB05_16725	COG1181	Belongs to the D-alanine--D-alanine ligase family
CQB05_16730	COG0773	UDP-N-acetylmuramate-L-alanine ligase activity
CQB05_16735	COG0707	Cell wall formation. Catalyzes the transfer of a GlcNAc subunit on undecaprenyl-pyrophosphoryl-MurNAc-pentapeptide (lipid intermediate I) to form undecaprenyl-pyrophosphoryl-MurNAc- (pentapeptide)GlcNAc (lipid intermediate II)
CQB05_16740	COG0772	Belongs to the SEDS family
CQB05_16745	COG0771	Cell wall formation. Catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine (UMA)
CQB05_16750	COG0472	First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan
CQB05_16755	COG0770	UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase activity
CQB05_16760	COG0769	Catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanyl-D-glutamate (UMAG) in the biosynthesis of bacterial cell-wall peptidoglycan
CQB05_16770	COG3116	cell division
CQB05_16775	COG0275	rRNA processing
CQB05_16780	COG2001	Belongs to the MraZ family
CQB05_16785	COG1220	this subunit has chaperone activity. The binding of ATP and its subsequent hydrolysis by HslU are essential for unfolding of protein substrates subsequently hydrolyzed by HslV. HslU recognizes the N-terminal part of its protein substrates and unfolds these before they are guided to HslV for hydrolysis
CQB05_16790	COG5405	Protease subunit of a proteasome-like degradation complex believed to be a general protein degrading machinery
CQB05_16800	COG1734	Transcription factor that acts by binding directly to the RNA polymerase (RNAP). Required for negative regulation of rRNA expression and positive regulation of several amino acid biosynthesis promoters
CQB05_16810	COG5002	protein histidine kinase activity
CQB05_16810	COG5001	Diguanylate cyclase
CQB05_16810	COG3447	MASE1 domain protein
CQB05_16835	COG4973	Belongs to the 'phage' integrase family. XerC subfamily
CQB05_16845	COG0253	Catalyzes the stereoinversion of LL-2,6- diaminoheptanedioate (L,L-DAP) to meso-diaminoheptanedioate (meso- DAP), a precursor of L-lysine and an essential component of the bacterial peptidoglycan
CQB05_16850	COG0625	glutathione transferase activity
CQB05_16885	COG4269	membrane
CQB05_16900	COG3266	domain, Protein
CQB05_16905	COG3409	Peptidoglycan-binding domain 1 protein
CQB05_16905	COG3267	Type II secretory pathway component ExeA
CQB05_16915	COG0411	ABC transporter
CQB05_16920	COG0559	Belongs to the binding-protein-dependent transport system permease family
CQB05_16960	COG2230	cyclopropane-fatty-acyl-phospholipid synthase
CQB05_16965	COG0519	Catalyzes the synthesis of GMP from XMP
CQB05_16990	COG1473	amidohydrolase
CQB05_17005	COG0243	molybdopterin cofactor binding
CQB05_17045	COG1335	isochorismatase
CQB05_17050	COG1741	Belongs to the pirin family
CQB05_17055	COG0583	DNA-binding transcription factor activity
CQB05_17065	COG1638	TRAP-type C4-dicarboxylate transport system periplasmic component
CQB05_17070	COG0129	dihydroxy-acid dehydratase activity
CQB05_17080	COG3090	Trap-type c4-dicarboxylate transport system, small permease component
CQB05_17085	COG1593	TRAP-type C4-dicarboxylate transport system, large permease component
CQB05_17095	COG3706	GGDEF domain
CQB05_17105	COG1272	protein, Hemolysin III
CQB05_17150	COG0477	Major facilitator Superfamily
CQB05_17180	COG3846	protein secretion by the type IV secretion system
CQB05_17195	COG3451	type IV secretory pathway VirB4
CQB05_17205	COG3838	Conjugal transfer protein Trbc
CQB05_17210	COG4962	Type ii secretion system protein e
CQB05_17265	COG0583	DNA-binding transcription factor activity
CQB05_17270	COG0656	L-ascorbic acid biosynthetic process
CQB05_17280	COG2249	NAD(P)H dehydrogenase (quinone) activity
CQB05_17295	COG4372	Transposase
CQB05_17305	COG0583	DNA-binding transcription factor activity
CQB05_17315	COG0738	Major facilitator superfamily
CQB05_17320	COG2814	Major facilitator Superfamily
CQB05_17335	COG2515	1-aminocyclopropane-1-carboxylate deaminase
CQB05_17365	COG4959	Type IV secretory pathway protease TraF
CQB05_17380	COG1192	Involved in chromosome partitioning
CQB05_17415	COG5489	Protein of unknown function (DUF736)
CQB05_17420	COG1475	DNA binding
CQB05_17440	COG1195	it is required for DNA replication and normal SOS inducibility. RecF binds preferentially to single-stranded, linear DNA. It also seems to bind ATP
CQB05_17475	COG3945	hemerythrin HHE cation binding domain
CQB05_17490	COG0288	reversible hydration of carbon dioxide
CQB05_17495	COG0760	Chaperone involved in the correct folding and assembly of outer membrane proteins. Recognizes specific patterns of aromatic residues and the orientation of their side chains, which are found more frequently in integral outer membrane proteins. May act in both early periplasmic and late outer membrane-associated steps of protein maturation
CQB05_17500	COG2181	nitrate reductase activity
CQB05_17505	COG2180	nitrate reductase molybdenum cofactor assembly chaperone
CQB05_17510	COG1140	nitrate reductase beta subunit
CQB05_17515	COG5013	Belongs to the prokaryotic molybdopterin-containing oxidoreductase family
CQB05_17535	COG4771	TonB-dependent receptor
CQB05_17550	COG2197	response regulator
CQB05_17565	COG1285	pathogenesis
CQB05_17585	COG0583	DNA-binding transcription factor activity
CQB05_17595	COG0277	FAD linked oxidase domain protein
CQB05_17615	COG2733	membrane
CQB05_17640	COG0664	- Catabolite gene activator and regulatory subunit of cAMP-dependent protein
CQB05_17655	COG2084	Dehydrogenase
CQB05_17660	COG2823	Periplasmic or secreted lipoprotein
CQB05_17665	COG0279	D-glycero-D-manno-heptose 7-phosphate biosynthetic process
CQB05_17670	COG0792	nuclease activity
CQB05_17675	COG0313	Catalyzes the 2'-O-methylation of the ribose of cytidine 1402 (C1402) in 16S rRNA
CQB05_17680	COG0443	Heat shock 70 kDa protein
CQB05_17690	COG0203	ribosomal protein L17
CQB05_17695	COG0202	RNA polymerase activity
CQB05_17700	COG0522	One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit
CQB05_17705	COG0100	Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine-Dalgarno cleft in the 70S ribosome
CQB05_17710	COG0099	Located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA. In the 70S ribosome it contacts the 23S rRNA (bridge B1a) and protein L5 of the 50S subunit (bridge B1b), connecting the 2 subunits
CQB05_17715	COG0257	Belongs to the bacterial ribosomal protein bL36 family
CQB05_17720	COG0201	protein transport
CQB05_17725	COG0200	Binds to the 23S rRNA
CQB05_17730	COG1841	ribosomal large subunit assembly
CQB05_17735	COG0098	Located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body
CQB05_17740	COG0256	This is one of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance
CQB05_17745	COG0097	This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7 L12 stalk, and near the tRNA binding site of the peptidyltransferase center
CQB05_17750	COG0096	One of the primary rRNA binding proteins, it binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit
CQB05_17755	COG0199	Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site
CQB05_17760	COG0094	This is 1 of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. In the 70S ribosome it contacts protein S13 of the 30S subunit (bridge B1b), connecting the 2 subunits
CQB05_17765	COG0198	One of the proteins that surrounds the polypeptide exit tunnel on the outside of the subunit
CQB05_17770	COG0093	Binds to 23S rRNA. Forms part of two intersubunit bridges in the 70S ribosome
CQB05_17790	COG0395	ABC-type sugar transport system, permease component
CQB05_17800	COG3842	ATPase activity
CQB05_17805	COG3842	ATPase activity
CQB05_17810	COG0554	Key enzyme in the regulation of glycerol uptake and metabolism. Catalyzes the phosphorylation of glycerol to yield sn- glycerol 3-phosphate
CQB05_17825	COG0463	Glycosyl transferase, family 2
CQB05_17840	COG0382	Catalyzes the prenylation of para-hydroxybenzoate (PHB) with an all-trans polyprenyl group. Mediates the second step in the final reaction sequence of ubiquinone-8 (UQ-8) biosynthesis, which is the condensation of the polyisoprenoid side chain with PHB, generating the first membrane-bound Q intermediate 3- octaprenyl-4-hydroxybenzoate
CQB05_17845	COG0783	Belongs to the Dps family
CQB05_17855	COG1200	Critical role in recombination and DNA repair. Helps process Holliday junction intermediates to mature products by catalyzing branch migration. Has a DNA unwinding activity characteristic of a DNA helicase with a 3'- to 5'- polarity. Unwinds branched duplex DNA (Y-DNA)
CQB05_17890	COG0692	Excises uracil residues from the DNA which can arise as a result of misincorporation of dUMP residues by DNA polymerase or due to deamination of cytosine
CQB05_17895	COG0134	indole-3-glycerol-phosphate synthase activity
CQB05_17900	COG0547	Catalyzes the transfer of the phosphoribosyl group of 5- phosphorylribose-1-pyrophosphate (PRPP) to anthranilate to yield N-(5'-phosphoribosyl)-anthranilate (PRA)
CQB05_17905	COG1280	lysine exporter protein (LysE YggA)
CQB05_17910	COG0512	Glutamine amidotransferase of anthranilate synthase
CQB05_17930	COG2336	PFAM SpoVT AbrB
CQB05_17950	COG0251	oxidation-reduction process
CQB05_17980	COG0697	spore germination
CQB05_18000	COG2894	cell division
CQB05_18045	COG0550	Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supercoils. Finally, in the religation step, the DNA 3'-OH attacks the covalent intermediate to expel the active-site tyrosine and restore the DNA phosphodiester backbone
CQB05_18050	COG0270	DNA (cytosine-5-)-methyltransferase activity
CQB05_18235	COG0587	DNA-directed DNA polymerase activity
CQB05_18340	COG3209	COG3209 Rhs family protein
CQB05_18350	COG3501	Rhs element vgr protein
CQB05_18360	COG2084	Dehydrogenase
CQB05_18375	COG2003	Belongs to the UPF0758 family
CQB05_18415	COG0582	viral genome integration into host DNA
CQB05_18430	COG3501	Rhs element vgr protein
CQB05_18455	COG1196	nuclear chromosome segregation
CQB05_18455	COG0741	lytic transglycosylase activity
CQB05_18455	COG0739	heme binding
CQB05_18460	COG0500	methyltransferase
CQB05_18575	COG1377	Required for formation of the rod structure in the basal body of the flagellar apparatus. Together with FliI and FliH, may constitute the export apparatus of flagellin
CQB05_18580	COG4789	Type iii secretion
CQB05_18595	COG4790	Type iii secretion
CQB05_18600	COG4794	Type iii secretion
CQB05_18620	COG2207	Transcriptional regulator
CQB05_18640	COG0546	phosphoglycolate phosphatase activity
CQB05_18650	COG0036	Belongs to the ribulose-phosphate 3-epimerase family
CQB05_18655	COG2967	ApaG domain
CQB05_18670	COG2170	ATP-dependent carboxylate-amine ligase which exhibits weak glutamate--cysteine ligase activity
CQB05_18690	COG1267	Lipid phosphatase which dephosphorylates phosphatidylglycerophosphate (PGP) to phosphatidylglycerol (PG)
CQB05_18705	COG0659	secondary active sulfate transmembrane transporter activity
CQB05_18710	COG0653	protein targeting
CQB05_18720	COG4178	(ABC) transporter
CQB05_18740	COG3476	COG3476 Tryptophan-rich sensory protein (mitochondrial benzodiazepine receptor homolog)
CQB05_18745	COG1508	bacterial-type RNA polymerase transcriptional activator activity, sequence-specific DNA binding
CQB05_18750	COG1137	ATPase activity
CQB05_18760	COG1651	Required for disulfide bond formation in some periplasmic proteins. Acts by transferring its disulfide bond to other proteins and is reduced in the process
CQB05_18770	COG0018	arginyl-trna synthetase
CQB05_18800	COG2225	Involved in the glycolate utilization. Catalyzes the condensation and subsequent hydrolysis of acetyl-coenzyme A (acetyl-CoA) and glyoxylate to form malate and CoA
CQB05_18805	COG0840	transmembrane signaling receptor activity
CQB05_18815	COG1942	4-Oxalocrotonate Tautomerase
CQB05_18820	COG2814	Major facilitator Superfamily
CQB05_18825	COG0121	glutamine amidotransferase
CQB05_18890	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
CQB05_18895	COG0841	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
CQB05_18955	COG1201	RNA secondary structure unwinding
CQB05_18960	COG1793	dna ligase
CQB05_18965	COG1793	dna ligase
CQB05_18965	COG1236	Exonuclease of the beta-lactamase fold involved in RNA processing
CQB05_18970	COG0355	proton-transporting ATP synthase activity, rotational mechanism
CQB05_18975	COG0055	Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits
CQB05_18980	COG0224	Produces ATP from ADP in the presence of a proton gradient across the membrane. The gamma chain is believed to be important in regulating ATPase activity and the flow of protons through the CF(0) complex
CQB05_18985	COG0056	Produces ATP from ADP in the presence of a proton gradient across the membrane. The alpha chain is a regulatory subunit
CQB05_18990	COG0712	F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation
CQB05_18995	COG0711	Component of the F(0) channel, it forms part of the peripheral stalk, linking F(1) to F(0)
CQB05_19005	COG0356	it plays a direct role in the translocation of protons across the membrane
CQB05_19015	COG2921	Belongs to the UPF0250 family
CQB05_19020	COG0321	lipoyl(octanoyl) transferase activity
CQB05_19025	COG0320	Catalyzes the radical-mediated insertion of two sulfur atoms into the C-6 and C-8 positions of the octanoyl moiety bound to the lipoyl domains of lipoate-dependent enzymes, thereby converting the octanoylated domains into lipoylated derivatives
CQB05_19040	COG0745	RESPONSE REGULATOR receiver
CQB05_19045	COG2205	protein histidine kinase activity
CQB05_19050	COG2156	Part of the high-affinity ATP-driven potassium transport (or Kdp) system, which catalyzes the hydrolysis of ATP coupled with the electrogenic transport of potassium into the cytoplasm. This subunit acts as a catalytic chaperone that increases the ATP- binding affinity of the ATP-hydrolyzing subunit KdpB by the formation of a transient KdpB KdpC ATP ternary complex
CQB05_19055	COG2216	Part of the high-affinity ATP-driven potassium transport (or Kdp) system, which catalyzes the hydrolysis of ATP coupled with the electrogenic transport of potassium into the cytoplasm. This subunit is responsible for energy coupling to the transport system
CQB05_19060	COG2060	Part of the high-affinity ATP-driven potassium transport (or Kdp) system, which catalyzes the hydrolysis of ATP coupled with the electrogenic transport of potassium into the cytoplasm. This subunit binds and transports the potassium across the cytoplasmic membrane
CQB05_19070	COG1080	General (non sugar-specific) component of the phosphoenolpyruvate-dependent sugar phosphotransferase system (sugar PTS). This major carbohydrate active-transport system catalyzes the phosphorylation of incoming sugar substrates concomitantly with their translocation across the cell membrane. Enzyme I transfers the phosphoryl group from phosphoenolpyruvate (PEP) to the phosphoryl carrier protein (HPr)
CQB05_19075	COG1925	phosphoenolpyruvate-dependent sugar phosphotransferase system
CQB05_19090	COG0526	COG0526, thiol-disulfide isomerase and thioredoxins
CQB05_19100	COG0678	peroxiredoxin activity
CQB05_19105	COG0186	One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA
CQB05_19110	COG0255	Belongs to the universal ribosomal protein uL29 family
CQB05_19115	COG0197	Binds 23S rRNA and is also seen to make contacts with the A and possibly P site tRNAs
CQB05_19120	COG0092	Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation
CQB05_19125	COG0091	The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome
CQB05_19130	COG0185	Protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA
CQB05_19135	COG0090	One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity
CQB05_19140	COG0089	rRNA binding
CQB05_19145	COG0088	Forms part of the polypeptide exit tunnel
CQB05_19150	COG0087	One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit
CQB05_19155	COG0051	transcription antitermination factor activity, RNA binding
CQB05_19160	COG0050	This protein promotes the GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis
CQB05_19165	COG0480	Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post- translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome
CQB05_19170	COG0049	tRNA binding
CQB05_19175	COG0048	Interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone. Located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side and probably holding the rRNA structure together. The combined cluster of proteins S8, S12 and S17 appears to hold together the shoulder and platform of the 30S subunit
CQB05_19180	COG1686	Belongs to the peptidase S11 family
CQB05_19185	COG2945	thiolester hydrolase activity
CQB05_19210	COG0598	Magnesium transport protein CorA
CQB05_19215	COG0518	GMP synthase (glutamine-hydrolyzing) activity
CQB05_19215	COG0519	Catalyzes the synthesis of GMP from XMP
CQB05_19220	COG1846	Transcriptional regulator
CQB05_19230	COG1566	PFAM secretion protein HlyD family protein
CQB05_19240	COG0412	Dienelactone hydrolase
CQB05_19245	COG1028	Short-chain dehydrogenase reductase Sdr
CQB05_19250	COG2095	MarC family integral membrane protein
CQB05_19255	COG0745	RESPONSE REGULATOR receiver
CQB05_19260	COG2205	protein histidine kinase activity
CQB05_19265	COG4452	Inner membrane protein CreD
CQB05_19285	COG3237	CsbD-like
CQB05_19310	COG1127	ABC transporter
CQB05_19315	COG0767	ABC-type transport system involved in resistance to organic solvents, permease component
CQB05_19335	COG1760	l-serine dehydratase
CQB05_19340	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
CQB05_19345	COG0765	amino acid transport
CQB05_19360	COG0768	penicillin binding
CQB05_19365	COG2891	Involved in formation of the rod shape of the cell. May also contribute to regulation of formation of penicillin-binding proteins
CQB05_19375	COG1077	Cell shape determining protein MreB Mrl
CQB05_19380	COG0721	Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp- tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA(Gln)
CQB05_19385	COG0154	amidase activity
CQB05_19390	COG0064	Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp- tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA(Gln)
CQB05_19400	COG0461	Catalyzes the transfer of a ribosyl phosphate group from 5-phosphoribose 1-diphosphate to orotate, leading to the formation of orotidine monophosphate (OMP)
CQB05_19405	COG0708	Exodeoxyribonuclease III
CQB05_19415	COG2814	Major facilitator Superfamily
CQB05_19420	COG0583	DNA-binding transcription factor activity
CQB05_19440	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
CQB05_19445	COG0471	metal ion transport
CQB05_19450	COG0501	Belongs to the peptidase M48B family
CQB05_19470	COG2211	Major facilitator Superfamily
CQB05_19475	COG0745	RESPONSE REGULATOR receiver
CQB05_19485	COG0477	Major facilitator Superfamily
CQB05_19550	COG1893	Catalyzes the NADPH-dependent reduction of ketopantoate into pantoic acid
CQB05_19575	COG0747	negative chemotaxis
CQB05_19585	COG0787	Catalyzes the interconversion of L-alanine and D- alanine. May also act on other amino acids
CQB05_19590	COG0477	Major facilitator Superfamily
CQB05_19600	COG0386	Belongs to the glutathione peroxidase family
CQB05_19630	COG0247	lactate metabolic process
CQB05_19640	COG0277	FAD linked oxidase domain protein
CQB05_19645	COG3501	Rhs element vgr protein
CQB05_19680	COG0004	ammonium transporteR
CQB05_19685	COG0347	Belongs to the P(II) protein family
CQB05_19695	COG0606	chelatase, subunit chli
CQB05_19705	COG4191	Histidine kinase
CQB05_19710	COG3181	Tripartite tricarboxylate transporter family receptor
CQB05_19715	COG0840	transmembrane signaling receptor activity
CQB05_19725	COG0583	DNA-binding transcription factor activity
CQB05_19785	COG0646	methionine synthase
CQB05_19785	COG1410	methionine synthase
CQB05_19805	COG0765	amino acid transport
CQB05_19820	COG3194	Catalyzes the catabolism of the allantoin degradation intermediate (S)-ureidoglycolate, generating urea and glyoxylate. Involved in the utilization of allantoin as nitrogen source
CQB05_19905	COG2326	polyphosphate kinase activity
CQB05_19915	COG0334	Belongs to the Glu Leu Phe Val dehydrogenases family
CQB05_19955	COG3181	Tripartite tricarboxylate transporter family receptor
CQB05_19965	COG1804	L-carnitine dehydratase bile acid-inducible protein F
CQB05_19980	COG0583	DNA-binding transcription factor activity
CQB05_20015	COG0840	transmembrane signaling receptor activity
CQB05_20070	COG0553	Transcription regulator that activates transcription by stimulating RNA polymerase (RNAP) recycling in case of stress conditions such as supercoiled DNA or high salt concentrations. Probably acts by releasing the RNAP, when it is trapped or immobilized on tightly supercoiled DNA. Does not activate transcription on linear DNA. Probably not involved in DNA repair
CQB05_20110	COG2271	Major facilitator Superfamily
CQB05_20115	COG0625	glutathione transferase activity
CQB05_20135	COG1960	acyl-CoA dehydrogenase activity
CQB05_20145	COG1171	Catalyzes the anaerobic formation of alpha-ketobutyrate and ammonia from threonine in a two-step reaction. The first step involved a dehydration of threonine and a production of enamine intermediates (aminocrotonate), which tautomerizes to its imine form (iminobutyrate). Both intermediates are unstable and short- lived. The second step is the nonenzymatic hydrolysis of the enamine imine intermediates to form 2-ketobutyrate and free ammonia. In the low water environment of the cell, the second step is accelerated by RidA
CQB05_20150	COG3131	Involved in the biosynthesis of osmoregulated periplasmic glucans (OPGs)
CQB05_20155	COG0603	Catalyzes the ATP-dependent conversion of 7-carboxy-7- deazaguanine (CDG) to 7-cyano-7-deazaguanine (preQ(0))
CQB05_20160	COG1274	phosphoenolpyruvate carboxykinase (GTP) activity
CQB05_20195	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
CQB05_20200	COG1182	Catalyzes the reductive cleavage of azo bond in aromatic azo compounds to the corresponding amines. Requires NADH, but not NADPH, as an electron donor for its activity
CQB05_20215	COG1853	conserved protein domain typically associated with flavoprotein oxygenases, DIM6 NTAB family
CQB05_20220	COG0851	Prevents the cell division inhibition by proteins MinC and MinD at internal division sites while permitting inhibition at polar sites. This ensures cell division at the proper site by restricting the formation of a division septum at the midpoint of the long axis of the cell
CQB05_20225	COG2894	cell division
CQB05_20230	COG0850	regulation of cytokinetic process
CQB05_20235	COG1183	phosphatidylcholine synthase activity
CQB05_20245	COG2423	ornithine cyclodeaminase activity
CQB05_20255	COG0365	Catalyzes the conversion of acetate into acetyl-CoA (AcCoA), an essential intermediate at the junction of anabolic and catabolic pathways. AcsA undergoes a two-step reaction. In the first half reaction, AcsA combines acetate with ATP to form acetyl-adenylate (AcAMP) intermediate. In the second half reaction, it can then transfer the acetyl group from AcAMP to the sulfhydryl group of CoA, forming the product AcCoA
CQB05_20265	COG0501	Belongs to the peptidase M48B family
CQB05_20285	COG0654	COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases
CQB05_20290	COG0395	ABC-type sugar transport system, permease component
CQB05_20295	COG1116	anion transmembrane transporter activity
CQB05_20325	COG0663	COG0663 Carbonic anhydrases acetyltransferases, isoleucine patch superfamily
CQB05_20345	COG2233	PERMEase
CQB05_20360	COG2050	protein possibly involved in aromatic compounds catabolism
CQB05_20365	COG2096	Adenosyltransferase
CQB05_20380	COG0277	FAD linked oxidase domain protein
CQB05_20455	COG1853	conserved protein domain typically associated with flavoprotein oxygenases, DIM6 NTAB family
CQB05_20470	COG3411	Ferredoxin
CQB05_20505	COG1903	Catalyzes the methylation of C-1 in cobalt-precorrin-5B to form cobalt-precorrin-6A
CQB05_20525	COG2272	Belongs to the type-B carboxylesterase lipase family
CQB05_20540	COG0546	phosphoglycolate phosphatase activity
CQB05_20540	COG0382	Catalyzes the prenylation of para-hydroxybenzoate (PHB) with an all-trans polyprenyl group. Mediates the second step in the final reaction sequence of ubiquinone-8 (UQ-8) biosynthesis, which is the condensation of the polyisoprenoid side chain with PHB, generating the first membrane-bound Q intermediate 3- octaprenyl-4-hydroxybenzoate
CQB05_20545	COG0277	FAD linked oxidase domain protein
CQB05_20565	COG0493	'glutamate synthase
CQB05_20590	COG1192	Involved in chromosome partitioning
CQB05_20595	COG1280	lysine exporter protein (LysE YggA)
CQB05_20600	COG0357	Ribosomal RNA small subunit methyltransferase G
CQB05_20605	COG0445	tRNA wobble uridine modification
CQB05_20625	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
CQB05_20630	COG4525	Part of the ABC transporter complex TauABC involved in taurine import. Responsible for energy coupling to the transport system
CQB05_20650	COG0642	Histidine kinase
CQB05_20655	COG0745	RESPONSE REGULATOR receiver
CQB05_20690	COG2217	Heavy metal translocating P-type atpase
CQB05_20700	COG0789	Transcriptional regulator
CQB05_20705	COG0183	Belongs to the thiolase family
CQB05_20730	COG2715	membrane protein required for spore maturation
CQB05_20735	COG2974	May be involved in recombination
CQB05_20755	COG0722	Stereospecific condensation of phosphoenolpyruvate (PEP) and D-erythrose-4-phosphate (E4P) giving rise to 3-deoxy-D- arabino-heptulosonate-7-phosphate (DAHP)
CQB05_20760	COG0791	NLP P60 protein
CQB05_20765	COG0119	Catalyzes the condensation of the acetyl group of acetyl-CoA with 3-methyl-2-oxobutanoate (2-oxoisovalerate) to form 3-carboxy-3-hydroxy-4-methylpentanoate (2-isopropylmalate)
CQB05_20780	COG2176	DNA-directed DNA polymerase activity
CQB05_20795	COG1199	ATP-dependent helicase activity
CQB05_20815	COG1764	response to oxidative stress
CQB05_20855	COG0593	it binds specifically double-stranded DNA at a 9 bp consensus (dnaA box) 5'-TTATC CA A CA A-3'. DnaA binds to ATP and to acidic phospholipids
CQB05_20860	COG0230	Belongs to the bacterial ribosomal protein bL34 family
CQB05_20865	COG0594	ribonuclease P activity
CQB05_20870	COG0759	Could be involved in insertion of integral membrane proteins into the membrane
CQB05_20875	COG0706	membrane insertase activity
CQB05_20885	COG0486	Exhibits a very high intrinsic GTPase hydrolysis rate. Involved in the addition of a carboxymethylaminomethyl (cmnm) group at the wobble position (U34) of certain tRNAs, forming tRNA- cmnm(5)s(2)U34
CQB05_20905	COG0503	Catalyzes a salvage reaction resulting in the formation of AMP, that is energically less costly than de novo synthesis
CQB05_20920	COG1778	Involved in the biosynthesis of lipopolysaccharides (LPSs). Catalyzes the hydrolysis of 3-deoxy-D-manno-octulosonate 8-phosphate (KDO 8-P) to 3-deoxy-D-manno-octulosonate (KDO) and inorganic phosphate
CQB05_20930	COG0300	oxidoreductase activity
CQB05_20935	COG0724	RNA recognition motif
CQB05_20940	COG0724	RNA recognition motif
CQB05_20945	COG2119	membrane
CQB05_20950	COG2021	Transfers an acetyl group from acetyl-CoA to L- homoserine, forming acetyl-L-homoserine
CQB05_20955	COG2227	3-demethylubiquinone-9 3-O-methyltransferase activity
CQB05_20960	COG3706	GGDEF domain
CQB05_20960	COG0745	RESPONSE REGULATOR receiver
CQB05_20965	COG4302	ethanolamine ammonia-lyase activity
CQB05_20970	COG4303	Ethanolamine ammonia lyase large subunit
CQB05_20975	COG1113	amino acid transport
CQB05_20980	COG2207	Transcriptional regulator
CQB05_20990	COG2814	Major facilitator Superfamily
CQB05_20995	COG1196	nuclear chromosome segregation
CQB05_21010	COG1385	rRNA (uridine-N3-)-methyltransferase activity
CQB05_21020	COG1452	involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane
CQB05_21025	COG0760	Chaperone involved in the correct folding and assembly of outer membrane proteins. Recognizes specific patterns of aromatic residues and the orientation of their side chains, which are found more frequently in integral outer membrane proteins. May act in both early periplasmic and late outer membrane-associated steps of protein maturation
CQB05_21030	COG0030	16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase activity
CQB05_21045	COG0280	phosphate acetyltransferase
CQB05_21045	COG0281	malic enzyme
CQB05_21070	COG0410	ABC transporter
CQB05_21095	COG1802	Transcriptional regulator
CQB05_21100	COG0745	RESPONSE REGULATOR receiver
CQB05_21100	COG3706	GGDEF domain
CQB05_21155	COG1893	Catalyzes the NADPH-dependent reduction of ketopantoate into pantoic acid
CQB05_21160	COG4262	Catalyzes the irreversible transfer of a propylamine group from the amino donor S-adenosylmethioninamine (decarboxy- AdoMet) to putrescine (1,4-diaminobutane) to yield spermidine
CQB05_21185	COG0307	riboflavin synthase, alpha
CQB05_21190	COG3706	GGDEF domain
CQB05_21215	COG0494	nUDIX hydrolase
CQB05_21220	COG0482	sulfurtransferase activity
CQB05_21225	COG1620	l-lactate permease
CQB05_21250	COG0640	Transcriptional regulator
CQB05_21275	COG0629	single-stranded DNA binding
CQB05_21285	COG2814	Major facilitator Superfamily
CQB05_21295	COG0529	Catalyzes the synthesis of activated sulfate
CQB05_21325	COG0840	transmembrane signaling receptor activity
CQB05_21355	COG1835	transferase activity, transferring acyl groups other than amino-acyl groups
CQB05_21360	COG0284	orotidine-5'-phosphate decarboxylase activity
CQB05_21365	COG0697	spore germination
CQB05_21375	COG0126	phosphoglycerate kinase activity
CQB05_21390	COG0223	Attaches a formyl group to the free amino group of methionyl-tRNA(fMet). The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and preventing the misappropriation of this tRNA by the elongation apparatus
CQB05_21400	COG0242	peptide deformylase activity
CQB05_21410	COG0758	DNA mediated transformation
CQB05_21415	COG0002	Catalyzes the NADPH-dependent reduction of N-acetyl-5- glutamyl phosphate to yield N-acetyl-L-glutamate 5-semialdehyde
CQB05_21420	COG0045	succinate-CoA ligase (ADP-forming) activity
CQB05_21425	COG0074	Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The alpha subunit of the enzyme binds the substrates coenzyme A and phosphate, while succinate binding and nucleotide specificity is provided by the beta subunit
CQB05_21430	COG0861	Integral membrane protein TerC family
CQB05_21440	COG1716	ATPase activity
CQB05_21450	COG3307	-O-antigen
CQB05_21455	COG0315	cyclic pyranopterin monophosphate synthase activity
CQB05_21460	COG4783	chaperone-mediated protein folding
CQB05_21465	COG1950	PFAM Membrane protein of
CQB05_21475	COG0861	Integral membrane protein TerC family
CQB05_21490	COG4681	YaeQ
CQB05_21500	COG0625	glutathione transferase activity
CQB05_21525	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
CQB05_21535	COG1309	transcriptional regulator
CQB05_21550	COG1020	D-alanine [D-alanyl carrier protein] ligase activity
CQB05_21555	COG1391	[glutamine synthetase]-adenylyl-L-tyrosine phosphorylase
CQB05_21565	COG0388	Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source
CQB05_21585	COG2821	murein-degrading enzyme. may play a role in recycling of muropeptides during cell elongation and or cell division
CQB05_21605	COG2814	Major facilitator Superfamily
CQB05_21615	COG1522	sequence-specific DNA binding
CQB05_21625	COG1862	Preprotein translocase
CQB05_21630	COG0342	Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA
CQB05_21635	COG0341	Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA
CQB05_21645	COG2137	regulation of response to DNA damage stimulus
CQB05_21650	COG0468	Can catalyze the hydrolysis of ATP in the presence of single-stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage
CQB05_21705	COG1654	Acts both as a biotin-- acetyl-CoA-carboxylase ligase and a biotin-operon repressor. In the presence of ATP, BirA activates biotin to form the BirA-biotinyl-5'-adenylate (BirA-bio- 5'-AMP or holoBirA) complex. HoloBirA can either transfer the biotinyl moiety to the biotin carboxyl carrier protein (BCCP) subunit of acetyl-CoA carboxylase, or bind to the biotin operator site and inhibit transcription of the operon
CQB05_21705	COG0340	biotin-[acetyl-CoA-carboxylase] ligase activity
CQB05_21740	COG1714	RDD family
CQB05_21790	COG2764	glyoxalase bleomycin resistance protein dioxygenase
CQB05_21805	COG1028	Short-chain dehydrogenase reductase Sdr
CQB05_21810	COG2194	sulfuric ester hydrolase activity
CQB05_21875	COG2071	gamma-glutamyl-gamma-aminobutyrate hydrolase activity
CQB05_21920	COG0057	glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity
CQB05_21940	COG0021	Catalyzes the transfer of a two-carbon ketol group from a ketose donor to an aldose acceptor, via a covalent intermediate with the cofactor thiamine pyrophosphate
CQB05_21950	COG1208	COG1208 Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis translation initiation factor 2B, gamma epsilon subunits eIF-2Bgamma eIF-2Bepsilon
CQB05_21955	COG0006	proline dipeptidase activity
CQB05_21960	COG0469	pyruvate kinase activity
CQB05_21975	COG0745	RESPONSE REGULATOR receiver
CQB05_21995	COG0318	PFAM AMP-dependent synthetase and ligase
CQB05_22005	COG0598	Magnesium transport protein CorA
CQB05_22020	COG1214	PFAM Peptidase M22, glycoprotease
CQB05_22045	COG0009	L-threonylcarbamoyladenylate synthase
CQB05_22050	COG0026	Catalyzes the ATP-dependent conversion of 5- aminoimidazole ribonucleotide (AIR) and HCO(3)(-) to N5- carboxyaminoimidazole ribonucleotide (N5-CAIR)
CQB05_22055	COG0041	Catalyzes the conversion of N5-carboxyaminoimidazole ribonucleotide (N5-CAIR) to 4-carboxy-5-aminoimidazole ribonucleotide (CAIR)
CQB05_22070	COG0152	phosphoribosylaminoimidazolesuccinocarboxamide synthase activity
CQB05_22075	COG1544	Required for dimerization of active 70S ribosomes into 100S ribosomes in stationary phase
CQB05_22085	COG1493	Catalyzes the ATP- as well as the pyrophosphate- dependent phosphorylation of a specific serine residue in HPr, a phosphocarrier protein of the phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS). HprK P also catalyzes the pyrophosphate-producing, inorganic phosphate-dependent dephosphorylation (phosphorolysis) of seryl-phosphorylated HPr (P- Ser-HPr). The two antagonistic activities of HprK P are regulated by several intracellular metabolites, which change their concentration in response to the absence or presence of rapidly metabolisable carbon sources (glucose, fructose, etc.) in the growth medium. Therefore, by controlling the phosphorylation state of HPr, HPrK P is a sensor enzyme that plays a major role in the regulation of carbon metabolism and sugar transport it mediates carbon catabolite repression (CCR), and regulates PTS-catalyzed carbohydrate uptake and inducer exclusion
CQB05_22090	COG0735	belongs to the Fur family
CQB05_22095	COG2913	Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane
CQB05_22115	COG5001	Diguanylate cyclase
CQB05_22115	COG3300	MHYT domain
CQB05_22125	COG0495	leucyl-tRNA aminoacylation
CQB05_22145	COG0014	Catalyzes the NADPH-dependent reduction of L-glutamate 5-phosphate into L-glutamate 5-semialdehyde and phosphate. The product spontaneously undergoes cyclization to form 1-pyrroline-5- carboxylate
CQB05_22150	COG0569	domain protein
CQB05_22155	COG0168	Low-affinity potassium transport system. Interacts with trk system potassium uptake protein TrkA
CQB05_22165	COG3158	transport of potassium into the cell
CQB05_22170	COG3135	benzoate transporter
CQB05_22175	COG0189	ligase activity
CQB05_22220	COG0050	This protein promotes the GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis
CQB05_22230	COG0690	P-P-bond-hydrolysis-driven protein transmembrane transporter activity
CQB05_22240	COG0080	Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors
CQB05_22245	COG0081	regulation of translation
CQB05_22250	COG0244	Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors
CQB05_22255	COG0222	ribosome binding
CQB05_22260	COG0085	RNA polymerase activity
CQB05_22265	COG0086	DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates
CQB05_22275	COG0781	Involved in transcription antitermination. Required for transcription of ribosomal RNA (rRNA) genes. Binds specifically to the boxA antiterminator sequence of the ribosomal RNA (rrn) operons
CQB05_22275	COG0144	Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA
CQB05_22285	COG5000	phosphorelay sensor kinase activity
CQB05_22290	COG2204	response regulator
CQB05_22305	COG2032	superoxide dismutase activity
CQB05_22320	COG3550	peptidyl-serine autophosphorylation
CQB05_22330	COG3046	protein related to deoxyribodipyrimidine photolyase
CQB05_22345	COG1116	anion transmembrane transporter activity
CQB05_22350	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
CQB05_22360	COG1028	Short-chain dehydrogenase reductase Sdr
CQB05_22365	COG2365	Tyrosine phosphatase family
CQB05_22385	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
CQB05_22395	COG2072	flavoprotein involved in K transport
CQB05_22405	COG3181	Tripartite tricarboxylate transporter family receptor
CQB05_22445	COG0840	transmembrane signaling receptor activity
CQB05_22455	COG2515	1-aminocyclopropane-1-carboxylate deaminase
CQB05_22460	COG1522	sequence-specific DNA binding
CQB05_22490	COG1028	Short-chain dehydrogenase reductase Sdr
CQB05_22515	COG0343	queuine tRNA-ribosyltransferase activity
CQB05_22520	COG0589	response to stress
CQB05_22535	COG0210	DNA helicase
CQB05_22555	COG1198	Involved in the restart of stalled replication forks. Recognizes and binds the arrested nascent DNA chain at stalled replication forks. It can open the DNA duplex, via its helicase activity, and promote assembly of the primosome and loading of the major replicative helicase DnaB onto DNA
CQB05_22560	COG0407	Catalyzes the decarboxylation of four acetate groups of uroporphyrinogen-III to yield coproporphyrinogen-III
CQB05_22575	COG3119	arylsulfatase activity
CQB05_22595	COG0583	DNA-binding transcription factor activity
CQB05_22600	COG0861	Integral membrane protein TerC family
CQB05_22630	COG0013	Catalyzes the attachment of alanine to tRNA(Ala) in a two-step reaction alanine is first activated by ATP to form Ala- AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain
CQB05_22675	COG0840	transmembrane signaling receptor activity
CQB05_22710	COG0384	phenazine biosynthesis protein PhzF
CQB05_22715	COG0625	glutathione transferase activity
CQB05_22720	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
CQB05_22725	COG0697	spore germination
CQB05_22735	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
CQB05_22750	COG1344	Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella
CQB05_22760	COG3951	Flagellar rod assembly protein muramidase FlgJ
CQB05_22760	COG1705	Flagellar rod assembly protein muramidase FlgJ
CQB05_22765	COG1706	bacterial-type flagellum-dependent cell motility
CQB05_22775	COG2063	Assembles around the rod to form the L-ring and probably protects the motor basal body from shearing forces during rotation
CQB05_22780	COG4786	Flagellar basal body rod
CQB05_22785	COG4787	bacterial-type flagellum-dependent cell motility
CQB05_22790	COG1749	Flagellar hook protein flgE
CQB05_22795	COG1843	Required for flagellar hook formation. May act as a scaffolding protein
CQB05_22800	COG1558	bacterial-type flagellum-dependent cell motility
CQB05_22805	COG1815	bacterial-type flagellum-dependent cell motility
CQB05_22845	COG1377	Required for formation of the rod structure in the basal body of the flagellar apparatus. Together with FliI and FliH, may constitute the export apparatus of flagellin
CQB05_22850	COG3143	Plays an important role in bacterial chemotaxis signal transduction pathway by accelerating the dephosphorylation of phosphorylated CheY (CheY-P)
CQB05_22855	COG0745	RESPONSE REGULATOR receiver
CQB05_22860	COG1360	Flagellar Motor Protein
CQB05_22865	COG1291	archaeal or bacterial-type flagellum-dependent cell motility
CQB05_22870	COG0438	transferase activity, transferring glycosyl groups
CQB05_22870	COG1216	Glycosyl transferase, family 2
CQB05_22875	COG0399	UDP-4-amino-4-deoxy-L-arabinose aminotransferase
CQB05_22880	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
CQB05_22890	COG4106	trans-aconitate 2-methyltransferase activity
CQB05_22930	COG1766	The M ring may be actively involved in energy transduction
CQB05_22960	COG1580	Controls the rotational direction of flagella during chemotaxis
CQB05_22970	COG1886	FliN is one of three proteins (FliG, FliN, FliM) that form the rotor-mounted switch complex (C ring), located at the base of the basal body. This complex interacts with the CheY and CheZ chemotaxis proteins, in addition to contacting components of the motor that determine the direction of flagellar rotation
CQB05_22985	COG1987	bacterial-type flagellum assembly
CQB05_23000	COG3851	Histidine kinase
CQB05_23010	COG0745	RESPONSE REGULATOR receiver
CQB05_23015	COG2198	Histidine kinase
CQB05_23015	COG0643	Histidine kinase
CQB05_23020	COG0835	chemotaxis
CQB05_23025	COG1352	Methylation of the membrane-bound methyl-accepting chemotaxis proteins (MCP) to form gamma-glutamyl methyl ester residues in MCP
CQB05_23030	COG1871	Probably deamidates glutamine residues to glutamate on methyl-accepting chemotaxis receptors (MCPs), playing an important role in chemotaxis
CQB05_23035	COG2201	protein-glutamate methylesterase activity
CQB05_23070	COG0789	Transcriptional regulator
CQB05_23075	COG1960	acyl-CoA dehydrogenase activity
CQB05_23080	COG0288	reversible hydration of carbon dioxide
CQB05_23085	COG4579	[isocitrate dehydrogenase (NADP+)] phosphatase activity
CQB05_23090	COG0183	Belongs to the thiolase family
CQB05_23105	COG1960	acyl-CoA dehydrogenase activity
CQB05_23120	COG3012	SEC-C Motif Domain Protein
CQB05_23125	COG0784	Response regulator, receiver
CQB05_23125	COG2198	Histidine kinase
CQB05_23125	COG2205	protein histidine kinase activity
CQB05_23130	COG0637	HAD-superfamily hydrolase subfamily IA, variant 3
CQB05_23150	COG0318	PFAM AMP-dependent synthetase and ligase
CQB05_23155	COG4799	Acetyl-CoA carboxylase, carboxyltransferase component subunits alpha and beta
CQB05_23160	COG0447	Converts o-succinylbenzoyl-CoA (OSB-CoA) to 1,4- dihydroxy-2-naphthoyl-CoA (DHNA-CoA)
CQB05_23175	COG0111	D-isomer specific 2-hydroxyacid dehydrogenase
CQB05_23210	COG3203	Forms passive diffusion pores that allow small molecular weight hydrophilic materials across the outer membrane
CQB05_23275	COG0399	UDP-4-amino-4-deoxy-L-arabinose aminotransferase
CQB05_23305	COG1136	(ABC) transporter
CQB05_23305	COG0577	efflux transmembrane transporter activity
CQB05_23320	COG0745	RESPONSE REGULATOR receiver
CQB05_23325	COG2205	protein histidine kinase activity
CQB05_23330	COG0418	dihydroorotase activity
CQB05_23345	COG0501	Belongs to the peptidase M48B family
CQB05_23350	COG0583	DNA-binding transcription factor activity
CQB05_23355	COG1250	3-hydroxyacyl-CoA dehydrogenase
CQB05_23355	COG1024	Enoyl-CoA hydratase
CQB05_23360	COG1960	acyl-CoA dehydrogenase activity
CQB05_23365	COG1960	acyl-CoA dehydrogenase activity
CQB05_23370	COG1024	Enoyl-CoA hydratase
CQB05_23375	COG1804	L-carnitine dehydratase bile acid-inducible protein F
CQB05_23410	COG0840	transmembrane signaling receptor activity
CQB05_23420	COG2509	5-formyltetrahydrofolate cyclo-ligase activity
CQB05_23425	COG0392	lysyltransferase activity
CQB05_23430	COG1502	Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol
CQB05_23435	COG3568	Endonuclease Exonuclease Phosphatase
CQB05_23455	COG0840	transmembrane signaling receptor activity
CQB05_23470	COG1187	pseudouridine synthase activity
CQB05_23485	COG0326	Molecular chaperone. Has ATPase activity
CQB05_23545	COG2815	serine threonine protein kinase
CQB05_23545	COG0515	serine threonine protein kinase
CQB05_23555	COG1764	response to oxidative stress
CQB05_23560	COG1846	Transcriptional regulator
CQB05_23570	COG3971	2-oxopent-4-enoate hydratase activity
CQB05_23575	COG0179	Fumarylacetoacetate (FAA) hydrolase
CQB05_23585	COG0251	oxidation-reduction process
CQB05_23600	COG1853	conserved protein domain typically associated with flavoprotein oxygenases, DIM6 NTAB family
CQB05_23610	COG1250	3-hydroxyacyl-CoA dehydrogenase
CQB05_23615	COG0842	Transport permease protein
CQB05_23620	COG1131	(ABC) transporter
CQB05_23625	COG0027	Involved in the de novo purine biosynthesis. Catalyzes the transfer of formate to 5-phospho-ribosyl-glycinamide (GAR), producing 5-phospho-ribosyl-N-formylglycinamide (FGAR). Formate is provided by PurU via hydrolysis of 10-formyl-tetrahydrofolate
CQB05_23655	COG4668	phosphoenolpyruvate-dependent sugar phosphotransferase system
CQB05_23655	COG1080	General (non sugar-specific) component of the phosphoenolpyruvate-dependent sugar phosphotransferase system (sugar PTS). This major carbohydrate active-transport system catalyzes the phosphorylation of incoming sugar substrates concomitantly with their translocation across the cell membrane. Enzyme I transfers the phosphoryl group from phosphoenolpyruvate (PEP) to the phosphoryl carrier protein (HPr)
CQB05_23665	COG1445	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
CQB05_23665	COG1299	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
CQB05_23680	COG3706	GGDEF domain
CQB05_23685	COG0775	Catalyzes the irreversible cleavage of the glycosidic bond in both 5'-methylthioadenosine (MTA) and S- adenosylhomocysteine (SAH AdoHcy) to adenine and the corresponding thioribose, 5'-methylthioribose and S-ribosylhomocysteine, respectively
CQB05_23690	COG0513	Belongs to the DEAD box helicase family
CQB05_23695	COG0053	Belongs to the cation diffusion facilitator (CDF) transporter (TC 2.A.4) family
CQB05_23700	COG1490	D-aminoacyl-tRNA deacylase activity
CQB05_23705	COG0319	Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA
CQB05_23710	COG1702	phosphate starvation-inducible protein PhoH
CQB05_23715	COG0632	four-way junction helicase activity
CQB05_23730	COG2255	four-way junction helicase activity
CQB05_23760	COG0037	tRNA processing
CQB05_23770	COG2197	response regulator
CQB05_23775	COG1966	Carbon starvation protein
CQB05_23780	COG2879	small protein
CQB05_23790	COG1028	Short-chain dehydrogenase reductase Sdr
CQB05_23805	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
CQB05_23810	COG0076	glutamate decarboxylase activity
CQB05_23825	COG0456	acetyltransferase
CQB05_23865	COG3387	PFAM Glycoside hydrolase 15-related
CQB05_23885	COG0617	tRNA 3'-terminal CCA addition
CQB05_23905	COG0212	Belongs to the 5-formyltetrahydrofolate cyclo-ligase family
CQB05_23910	COG0739	heme binding
CQB05_23910	COG0741	lytic transglycosylase activity
CQB05_23910	COG1196	nuclear chromosome segregation
CQB05_23925	COG1869	D-ribose catabolic process
CQB05_23930	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
CQB05_23940	COG1172	Belongs to the binding-protein-dependent transport system permease family
CQB05_23945	COG1129	ABC transporter
CQB05_23950	COG1879	ABC-type sugar transport system periplasmic component
CQB05_23955	COG0318	PFAM AMP-dependent synthetase and ligase
CQB05_23965	COG3186	Phenylalanine-4-hydroxylase
CQB05_23985	COG1075	acetyltransferases and hydrolases with the alpha beta hydrolase fold
CQB05_23990	COG1522	sequence-specific DNA binding
CQB05_24000	COG4535	Mg2 and Co2 transporter CorC
CQB05_24005	COG0815	Transfers the fatty acyl group on membrane lipoproteins
CQB05_24020	COG0764	3-hydroxyoctanoyl-[acyl-carrier-protein] dehydratase activity
CQB05_24030	COG3258	Cytochrome c
CQB05_24035	COG0752	glycyl-tRNA synthetase alpha subunit
CQB05_24040	COG0751	glycine-tRNA ligase activity
CQB05_24050	COG0241	D,D-heptose 1,7-bisphosphate phosphatase
CQB05_24055	COG0204	Acyl-transferase
CQB05_24075	COG1652	LysM domain
CQB05_24080	COG1521	Catalyzes the phosphorylation of pantothenate (Pan), the first step in CoA biosynthesis
CQB05_24120	COG2804	Type II secretory pathway, ATPase PulE Tfp pilus assembly pathway, ATPase PilB
CQB05_24125	COG1459	type II secretion system
CQB05_24130	COG2165	general secretion pathway protein
CQB05_24135	COG4970	Tfp pilus assembly protein FimT
CQB05_24140	COG2165	general secretion pathway protein
CQB05_24170	COG1450	Type ii and iii secretion system protein
CQB05_24185	COG0760	Chaperone involved in the correct folding and assembly of outer membrane proteins. Recognizes specific patterns of aromatic residues and the orientation of their side chains, which are found more frequently in integral outer membrane proteins. May act in both early periplasmic and late outer membrane-associated steps of protein maturation
CQB05_24225	COG0548	Belongs to the acetylglutamate kinase family. ArgB subfamily
CQB05_24230	COG0745	RESPONSE REGULATOR receiver
CQB05_24240	COG1309	transcriptional regulator