CQB05_00115 SM00822 CQB05_00115 CQB05_00125 SM00829 Enoylreductase CQB05_00155 SM00151 SWI complex, BAF60b domains CQB05_00165 SM00344 helix_turn_helix ASNC type CQB05_00185 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain CQB05_00210 SM00873 B3/4 domain CQB05_00210 SM00874 tRNA synthetase B5 domain CQB05_00210 SM00896 Ferredoxin-fold anticodon binding domain CQB05_00215 SM00411 bacterial (prokaryotic) histone like domain CQB05_00220 SM00422 helix_turn_helix, mercury resistance CQB05_00240 SM01266 CQB05_00240 CQB05_00245 SM00382 ATPases associated with a variety of cellular activities CQB05_00255 SM00052 Putative diguanylate phosphodiesterase CQB05_00255 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) CQB05_00255 SM00091 PAS domain CQB05_00255 SM00267 diguanylate cyclase CQB05_00255 SM01079 CQB05_00255 CQB05_00270 SM00968 SMC proteins Flexible Hinge Domain CQB05_00275 SM00771 ZipA, C-terminal domain (FtsZ-binding) CQB05_00280 SM00278 Helix-hairpin-helix DNA-binding motif class 1 CQB05_00280 SM00292 breast cancer carboxy-terminal domain CQB05_00280 SM00532 Ligase N family CQB05_00305 SM00062 Bacterial periplasmic substrate-binding proteins CQB05_00320 SM00487 DEAD-like helicases superfamily CQB05_00320 SM00490 helicase superfamily c-terminal domain CQB05_00355 SM00052 Putative diguanylate phosphodiesterase CQB05_00355 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) CQB05_00355 SM00091 PAS domain CQB05_00355 SM00267 diguanylate cyclase CQB05_00370 SM00342 helix_turn_helix, arabinose operon control protein CQB05_00370 SM00478 endonuclease III CQB05_00370 SM01009 AlkA N-terminal domain CQB05_00390 SM00881 CoA binding domain CQB05_00400 SM00450 Rhodanese Homology Domain CQB05_00425 SM00382 ATPases associated with a variety of cellular activities CQB05_00495 SM00354 helix_turn _helix lactose operon repressor CQB05_00540 SM00822 CQB05_00540 CQB05_00555 SM00729 Elongator protein 3, MiaB family, Radical SAM CQB05_00575 SM00382 ATPases associated with a variety of cellular activities CQB05_00625 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. CQB05_00840 SM00481 DNA polymerase alpha chain like domain CQB05_00990 SM00670 Large family of predicted nucleotide-binding domains CQB05_01000 SM00857 Resolvase, N terminal domain CQB05_01090 SM00487 DEAD-like helicases superfamily CQB05_01090 SM00490 helicase superfamily c-terminal domain CQB05_01165 SM00481 DNA polymerase alpha chain like domain CQB05_01230 SM00729 Elongator protein 3, MiaB family, Radical SAM CQB05_01245 SM00852 Probable molybdopterin binding domain CQB05_01270 SM00849 Metallo-beta-lactamase superfamily CQB05_01295 SM00493 CQB05_01295 CQB05_01315 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). CQB05_01315 SM01049 CQB05_01315 CQB05_01345 SM00357 Cold shock protein domain CQB05_01345 SM00382 ATPases associated with a variety of cellular activities CQB05_01345 SM00959 Rho termination factor, N-terminal domain CQB05_01380 SM00448 cheY-homologous receiver domain CQB05_01380 SM00862 Transcriptional regulatory protein, C terminal CQB05_01390 SM00382 ATPases associated with a variety of cellular activities CQB05_01420 SM00855 Phosphoglycerate mutase family CQB05_01435 SM00052 Putative diguanylate phosphodiesterase CQB05_01435 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) CQB05_01435 SM00091 PAS domain CQB05_01435 SM00267 diguanylate cyclase CQB05_01450 SM00382 ATPases associated with a variety of cellular activities CQB05_01460 SM01103 CQB05_01460 CQB05_01480 SM00851 MGS-like domain CQB05_01480 SM01096 Carbamoyl-phosphate synthetase large chain, oligomerisation domain CQB05_01485 SM01097 Carbamoyl-phosphate synthase small chain, CPSase domain CQB05_01560 SM00858 CQB05_01560 CQB05_01590 SM00345 helix_turn_helix gluconate operon transcriptional repressor CQB05_01590 SM00895 CQB05_01590 CQB05_01600 SM01130 CQB05_01600 CQB05_01635 SM00528 Domain in histone-like proteins of HNS family CQB05_01640 SM00422 helix_turn_helix, mercury resistance CQB05_01675 SM01329 CQB05_01675 CQB05_01740 SM00870 CQB05_01740 CQB05_01755 SM00382 ATPases associated with a variety of cellular activities CQB05_01755 SM00487 DEAD-like helicases superfamily CQB05_01755 SM00490 helicase superfamily c-terminal domain CQB05_01755 SM00847 Helicase associated domain (HA2) Add an annotation CQB05_01785 SM00450 Rhodanese Homology Domain CQB05_01795 SM00382 ATPases associated with a variety of cellular activities CQB05_01845 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). CQB05_01855 SM00382 ATPases associated with a variety of cellular activities CQB05_01855 SM00930 CQB05_01855 CQB05_01860 SM00091 PAS domain CQB05_01860 SM00387 Histidine kinase-like ATPases CQB05_01860 SM00388 His Kinase A (phosphoacceptor) domain CQB05_01860 SM00448 cheY-homologous receiver domain CQB05_01875 SM00226 Low molecular weight phosphatase family CQB05_01900 SM00448 cheY-homologous receiver domain CQB05_01900 SM00862 Transcriptional regulatory protein, C terminal CQB05_01905 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CQB05_01905 SM00387 Histidine kinase-like ATPases CQB05_01905 SM00388 His Kinase A (phosphoacceptor) domain CQB05_01935 SM00559 Ku70 and Ku80 are 70kDa and 80kDa subunits of the Lupus Ku autoantigen CQB05_01945 SM00729 Elongator protein 3, MiaB family, Radical SAM CQB05_01945 SM00876 Biotin and Thiamin Synthesis associated domain CQB05_01960 SM00878 Biotin carboxylase C-terminal domain CQB05_01990 SM00345 helix_turn_helix gluconate operon transcriptional repressor CQB05_01990 SM00895 CQB05_01990 CQB05_02050 SM00421 helix_turn_helix, Lux Regulon CQB05_02050 SM00448 cheY-homologous receiver domain CQB05_02055 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). CQB05_02055 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CQB05_02085 SM00052 Putative diguanylate phosphodiesterase CQB05_02085 SM00267 diguanylate cyclase CQB05_02085 SM01079 CQB05_02085 CQB05_02090 SM00954 Region found in RelA / SpoT proteins CQB05_02105 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). CQB05_02105 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CQB05_02135 SM00382 ATPases associated with a variety of cellular activities CQB05_02140 SM00822 CQB05_02140 CQB05_02180 SM00364 Leucine-rich repeats, bacterial type CQB05_02180 SM00369 Leucine-rich repeats, typical (most populated) subfamily CQB05_02185 SM00062 Bacterial periplasmic substrate-binding proteins CQB05_02235 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) CQB05_02235 SM00091 PAS domain CQB05_02235 SM00387 Histidine kinase-like ATPases CQB05_02235 SM00388 His Kinase A (phosphoacceptor) domain CQB05_02240 SM00421 helix_turn_helix, Lux Regulon CQB05_02240 SM00448 cheY-homologous receiver domain CQB05_02305 SM00479 CQB05_02305 CQB05_02345 SM00487 DEAD-like helicases superfamily CQB05_02345 SM00490 helicase superfamily c-terminal domain CQB05_02365 SM00729 Elongator protein 3, MiaB family, Radical SAM CQB05_02370 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). CQB05_02455 SM00363 S4 RNA-binding domain CQB05_02555 SM00857 Resolvase, N terminal domain CQB05_02565 SM00857 Resolvase, N terminal domain CQB05_02960 SM00478 endonuclease III CQB05_02965 SM00840 CQB05_02965 CQB05_02970 SM00028 Tetratricopeptide repeats CQB05_03020 SM00344 helix_turn_helix ASNC type CQB05_03120 SM00155 Phospholipase D. Active site motifs. CQB05_03135 SM00671 Sel1-like repeats. CQB05_03150 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). CQB05_03190 SM00422 helix_turn_helix, mercury resistance CQB05_03210 SM00346 helix_turn_helix isocitrate lyase regulation CQB05_03235 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. CQB05_03235 SM00387 Histidine kinase-like ATPases CQB05_03235 SM00388 His Kinase A (phosphoacceptor) domain CQB05_03300 SM00382 ATPases associated with a variety of cellular activities CQB05_03310 SM00382 ATPases associated with a variety of cellular activities CQB05_03330 SM01130 CQB05_03330 CQB05_03345 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain CQB05_03360 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). CQB05_03360 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CQB05_03365 SM00448 cheY-homologous receiver domain CQB05_03370 SM00448 cheY-homologous receiver domain CQB05_03375 SM00448 cheY-homologous receiver domain CQB05_03380 SM00062 Bacterial periplasmic substrate-binding proteins CQB05_03385 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) CQB05_03385 SM00091 PAS domain CQB05_03385 SM00387 Histidine kinase-like ATPases CQB05_03385 SM00388 His Kinase A (phosphoacceptor) domain CQB05_03475 SM00387 Histidine kinase-like ATPases CQB05_03480 SM00448 cheY-homologous receiver domain CQB05_03505 SM00530 Helix-turn-helix XRE-family like proteins CQB05_03540 SM00345 helix_turn_helix gluconate operon transcriptional repressor CQB05_03540 SM00866 CQB05_03540 CQB05_03585 SM00342 helix_turn_helix, arabinose operon control protein CQB05_03590 SM00829 Enoylreductase CQB05_03610 SM01329 CQB05_03610 CQB05_03615 SM00382 ATPases associated with a variety of cellular activities CQB05_03665 SM00344 helix_turn_helix ASNC type CQB05_03685 SM00729 Elongator protein 3, MiaB family, Radical SAM CQB05_03720 SM00893 Electron transfer flavoprotein domain CQB05_03725 SM00893 Electron transfer flavoprotein domain CQB05_03750 SM00382 ATPases associated with a variety of cellular activities CQB05_03760 SM00460 Transglutaminase/protease-like homologues CQB05_03820 SM01012 CQB05_03820 CQB05_03840 SM00382 ATPases associated with a variety of cellular activities CQB05_03860 SM00360 RNA recognition motif CQB05_03950 SM00448 cheY-homologous receiver domain CQB05_03965 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CQB05_03965 SM00387 Histidine kinase-like ATPases CQB05_03985 SM00116 Domain in cystathionine beta-synthase and other proteins. CQB05_03990 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) CQB05_03990 SM00091 PAS domain CQB05_03990 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). CQB05_04015 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). CQB05_04030 SM00926 Molybdopterin oxidoreductase Fe4S4 domain CQB05_04045 SM00637 CQB05_04045 CQB05_04055 SM00947 Carbonic anhydrase CQB05_04075 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor CQB05_04115 SM01329 CQB05_04115 CQB05_04140 SM00858 CQB05_04140 CQB05_04165 SM00852 Probable molybdopterin binding domain CQB05_04185 SM00382 ATPases associated with a variety of cellular activities CQB05_04220 SM00382 ATPases associated with a variety of cellular activities CQB05_04230 SM00448 cheY-homologous receiver domain CQB05_04230 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. CQB05_04235 SM00073 Histidine Phosphotransfer domain CQB05_04235 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) CQB05_04235 SM00091 PAS domain CQB05_04235 SM00387 Histidine kinase-like ATPases CQB05_04235 SM00388 His Kinase A (phosphoacceptor) domain CQB05_04235 SM00448 cheY-homologous receiver domain CQB05_04290 SM00533 DNA-binding domain of DNA mismatch repair MUTS family CQB05_04290 SM00534 ATPase domain of DNA mismatch repair MUTS family CQB05_04330 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) CQB05_04330 SM00091 PAS domain CQB05_04330 SM00267 diguanylate cyclase CQB05_04365 SM00387 Histidine kinase-like ATPases CQB05_04370 SM00448 cheY-homologous receiver domain CQB05_04370 SM00850 LytTr DNA-binding domain CQB05_04415 SM00382 ATPases associated with a variety of cellular activities CQB05_04425 SM00642 Alpha-amylase domain CQB05_04430 SM00642 Alpha-amylase domain CQB05_04435 SM00642 Alpha-amylase domain CQB05_04470 SM00861 Transketolase, pyrimidine binding domain CQB05_04495 SM00450 Rhodanese Homology Domain CQB05_04570 SM00382 ATPases associated with a variety of cellular activities CQB05_04720 SM00342 helix_turn_helix, arabinose operon control protein CQB05_04770 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). CQB05_04770 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CQB05_04815 SM00448 cheY-homologous receiver domain CQB05_04815 SM00850 LytTr DNA-binding domain CQB05_04865 SM00062 Bacterial periplasmic substrate-binding proteins CQB05_04900 SM00279 Helix-hairpin-helix class 2 (Pol1 family) motifs CQB05_04900 SM00474 3'-5' exonuclease CQB05_04900 SM00475 5'-3' exonuclease CQB05_04900 SM00482 DNA polymerase A domain CQB05_05050 SM00382 ATPases associated with a variety of cellular activities CQB05_05050 SM00448 cheY-homologous receiver domain CQB05_05055 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) CQB05_05055 SM00387 Histidine kinase-like ATPases CQB05_05055 SM00388 His Kinase A (phosphoacceptor) domain CQB05_05055 SM00448 cheY-homologous receiver domain CQB05_05080 SM00267 diguanylate cyclase CQB05_05085 SM00487 DEAD-like helicases superfamily CQB05_05085 SM00490 helicase superfamily c-terminal domain CQB05_05090 SM00479 CQB05_05090 CQB05_05165 SM00382 ATPases associated with a variety of cellular activities CQB05_05170 SM00382 ATPases associated with a variety of cellular activities CQB05_05185 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). CQB05_05185 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CQB05_05190 SM00382 ATPases associated with a variety of cellular activities CQB05_05195 SM00986 Uracil DNA glycosylase superfamily CQB05_05195 SM00987 UreE urease accessory protein, C-terminal domain CQB05_05235 SM00345 helix_turn_helix gluconate operon transcriptional repressor CQB05_05255 SM00656 CQB05_05255 CQB05_05295 SM00636 CQB05_05295 CQB05_05300 SM00028 Tetratricopeptide repeats CQB05_05305 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). CQB05_05325 SM00507 HNH nucleases CQB05_05330 SM00904 Riboflavin kinase CQB05_05350 SM00354 helix_turn _helix lactose operon repressor CQB05_05370 SM00382 ATPases associated with a variety of cellular activities CQB05_05420 SM00903 Flavin reductase like domain CQB05_05430 SM00829 Enoylreductase CQB05_05485 SM00860 SMI1 / KNR4 family CQB05_05500 SM00860 SMI1 / KNR4 family CQB05_05555 SM00014 Acid phosphatase homologues CQB05_05570 SM00357 Cold shock protein domain CQB05_05580 SM00382 ATPases associated with a variety of cellular activities CQB05_05585 SM00382 ATPases associated with a variety of cellular activities CQB05_05610 SM01301 CQB05_05610 CQB05_05620 SM00867 YceI-like domain CQB05_05625 SM00867 YceI-like domain CQB05_05645 SM00878 Biotin carboxylase C-terminal domain CQB05_05650 SM00796 Allophanate hydrolase subunit 1 CQB05_05650 SM00797 Allophanate hydrolase subunit 2 CQB05_05670 SM00345 helix_turn_helix gluconate operon transcriptional repressor CQB05_05670 SM00895 CQB05_05670 CQB05_05685 SM00387 Histidine kinase-like ATPases CQB05_05685 SM00388 His Kinase A (phosphoacceptor) domain CQB05_05715 SM00052 Putative diguanylate phosphodiesterase CQB05_05715 SM00091 PAS domain CQB05_05715 SM00267 diguanylate cyclase CQB05_05720 SM00421 helix_turn_helix, Lux Regulon CQB05_05720 SM00448 cheY-homologous receiver domain CQB05_05725 SM00387 Histidine kinase-like ATPases CQB05_05725 SM00388 His Kinase A (phosphoacceptor) domain CQB05_05725 SM00448 cheY-homologous receiver domain CQB05_05755 SM00988 UreE urease accessory protein, N-terminal domain CQB05_05780 SM00382 ATPases associated with a variety of cellular activities CQB05_05810 SM00387 Histidine kinase-like ATPases CQB05_05810 SM00388 His Kinase A (phosphoacceptor) domain CQB05_05825 SM00052 Putative diguanylate phosphodiesterase CQB05_05830 SM00138 Methyltransferase, chemotaxis proteins CQB05_05840 SM00448 cheY-homologous receiver domain CQB05_05920 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) CQB05_05920 SM00091 PAS domain CQB05_05920 SM00387 Histidine kinase-like ATPases CQB05_05920 SM00388 His Kinase A (phosphoacceptor) domain CQB05_05920 SM00448 cheY-homologous receiver domain CQB05_05970 SM00822 CQB05_05970 CQB05_06000 SM00331 Sigma factor PP2C-like phosphatases CQB05_06000 SM00332 Serine/threonine phosphatases, family 2C, catalytic domain CQB05_06005 SM00220 Serine/Threonine protein kinases, catalytic domain CQB05_06015 SM00072 Guanylate kinase homologues. CQB05_06020 SM01409 CQB05_06020 CQB05_06025 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. CQB05_06025 SM00954 Region found in RelA / SpoT proteins CQB05_06055 SM00633 Glycosyl hydrolase family 10 CQB05_06060 SM00421 helix_turn_helix, Lux Regulon CQB05_06060 SM00448 cheY-homologous receiver domain CQB05_06075 SM00857 Resolvase, N terminal domain CQB05_06135 SM00478 endonuclease III CQB05_06145 SM00898 Formamidopyrimidine-DNA glycosylase N-terminal domain CQB05_06145 SM01232 CQB05_06145 CQB05_06150 SM00028 Tetratricopeptide repeats CQB05_06170 SM01400 CQB05_06170 CQB05_06200 SM00382 ATPases associated with a variety of cellular activities CQB05_06205 SM00382 ATPases associated with a variety of cellular activities CQB05_06230 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain CQB05_06240 SM00354 helix_turn _helix lactose operon repressor CQB05_06265 SM01034 Sensors of blue-light using FAD CQB05_06285 SM00028 Tetratricopeptide repeats CQB05_06285 SM00448 cheY-homologous receiver domain CQB05_06310 SM00834 Putative regulatory protein CQB05_06330 SM00978 CQB05_06330 CQB05_06345 SM00267 diguanylate cyclase CQB05_06380 SM00382 ATPases associated with a variety of cellular activities CQB05_06440 SM00937 CQB05_06440 CQB05_06455 SM00382 ATPases associated with a variety of cellular activities CQB05_06460 SM01091 Transporter associated domain CQB05_06480 SM00359 Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase CQB05_06525 SM00382 ATPases associated with a variety of cellular activities CQB05_06570 SM00957 SecA DEAD-like domain CQB05_06570 SM00958 SecA preprotein cross-linking domain CQB05_06625 SM00382 ATPases associated with a variety of cellular activities CQB05_06660 SM00481 DNA polymerase alpha chain like domain CQB05_06745 SM00382 ATPases associated with a variety of cellular activities CQB05_06760 SM01006 Siderophore biosynthesis protein domain CQB05_06770 SM00823 Phosphopantetheine attachment site CQB05_06770 SM00824 Thioesterase CQB05_06775 SM00823 Phosphopantetheine attachment site CQB05_06780 SM00823 Phosphopantetheine attachment site CQB05_06790 SM00823 Phosphopantetheine attachment site CQB05_06805 SM00923 MbtH-like protein CQB05_06895 SM00062 Bacterial periplasmic substrate-binding proteins CQB05_06925 SM00052 Putative diguanylate phosphodiesterase CQB05_06925 SM00091 PAS domain CQB05_06925 SM00267 diguanylate cyclase CQB05_06965 SM00116 Domain in cystathionine beta-synthase and other proteins. CQB05_06970 SM00116 Domain in cystathionine beta-synthase and other proteins. CQB05_06970 SM01091 Transporter associated domain CQB05_07005 SM00463 Small MutS-related domain CQB05_07010 SM00387 Histidine kinase-like ATPases CQB05_07015 SM00448 cheY-homologous receiver domain CQB05_07015 SM00862 Transcriptional regulatory protein, C terminal CQB05_07155 SM00421 helix_turn_helix, Lux Regulon CQB05_07190 SM00382 ATPases associated with a variety of cellular activities CQB05_07195 SM00382 ATPases associated with a variety of cellular activities CQB05_07245 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). CQB05_07245 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CQB05_07390 SM00450 Rhodanese Homology Domain CQB05_07395 SM00855 Phosphoglycerate mutase family CQB05_07400 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. CQB05_07400 SM00245 tail specific protease CQB05_07410 SM00448 cheY-homologous receiver domain CQB05_07415 SM00421 helix_turn_helix, Lux Regulon CQB05_07415 SM00448 cheY-homologous receiver domain CQB05_07420 SM00387 Histidine kinase-like ATPases CQB05_07440 SM00749 bacterial OsmY and nodulation domain CQB05_07470 SM00382 ATPases associated with a variety of cellular activities CQB05_07470 SM00962 SRP54-type protein, GTPase domain CQB05_07470 SM00963 SRP54-type protein, helical bundle domain CQB05_07500 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). CQB05_07500 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CQB05_07505 SM00342 helix_turn_helix, arabinose operon control protein CQB05_07550 SM00382 ATPases associated with a variety of cellular activities CQB05_07585 SM00100 Cyclic nucleotide-monophosphate binding domain CQB05_07585 SM00419 helix_turn_helix, cAMP Regulatory protein CQB05_07715 SM00347 helix_turn_helix multiple antibiotic resistance protein CQB05_07720 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). CQB05_07720 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CQB05_07765 SM01008 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain CQB05_07775 SM00347 helix_turn_helix multiple antibiotic resistance protein CQB05_07830 SM00882 Coenzyme A transferase CQB05_07835 SM00882 Coenzyme A transferase CQB05_07840 SM00346 helix_turn_helix isocitrate lyase regulation CQB05_07870 SM00382 ATPases associated with a variety of cellular activities CQB05_07925 SM00387 Histidine kinase-like ATPases CQB05_07925 SM00388 His Kinase A (phosphoacceptor) domain CQB05_07930 SM00448 cheY-homologous receiver domain CQB05_07930 SM00862 Transcriptional regulatory protein, C terminal CQB05_07935 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. CQB05_07955 SM00342 helix_turn_helix, arabinose operon control protein CQB05_07960 SM00487 DEAD-like helicases superfamily CQB05_08010 SM00382 ATPases associated with a variety of cellular activities CQB05_08020 SM01209 CQB05_08020 CQB05_08070 SM00460 Transglutaminase/protease-like homologues CQB05_08075 SM01060 CQB05_08075 CQB05_08080 SM00448 cheY-homologous receiver domain CQB05_08085 SM00387 Histidine kinase-like ATPases CQB05_08085 SM00388 His Kinase A (phosphoacceptor) domain CQB05_08085 SM00448 cheY-homologous receiver domain CQB05_08095 SM00138 Methyltransferase, chemotaxis proteins CQB05_08100 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. CQB05_08100 SM00387 Histidine kinase-like ATPases CQB05_08100 SM00388 His Kinase A (phosphoacceptor) domain CQB05_08100 SM00448 cheY-homologous receiver domain CQB05_08110 SM00267 diguanylate cyclase CQB05_08110 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CQB05_08140 SM00382 ATPases associated with a variety of cellular activities CQB05_08145 SM00487 DEAD-like helicases superfamily CQB05_08145 SM00490 helicase superfamily c-terminal domain CQB05_08170 SM01236 CQB05_08170 CQB05_08180 SM01008 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain CQB05_08185 SM01092 CO dehydrogenase flavoprotein C-terminal domain CQB05_08270 SM00880 CQB05_08270 CQB05_08270 SM01118 CQB05_08270 CQB05_08305 SM00344 helix_turn_helix ASNC type CQB05_08310 SM00387 Histidine kinase-like ATPases CQB05_08310 SM00388 His Kinase A (phosphoacceptor) domain CQB05_08320 SM00100 Cyclic nucleotide-monophosphate binding domain CQB05_08320 SM00419 helix_turn_helix, cAMP Regulatory protein CQB05_08325 SM01034 Sensors of blue-light using FAD CQB05_08420 SM00996 S-adenosyl-L-homocysteine hydrolase CQB05_08420 SM00997 S-adenosyl-L-homocysteine hydrolase, NAD binding domain CQB05_08470 SM00382 ATPases associated with a variety of cellular activities CQB05_08485 SM00062 Bacterial periplasmic substrate-binding proteins CQB05_08490 SM00062 Bacterial periplasmic substrate-binding proteins CQB05_08515 SM00382 ATPases associated with a variety of cellular activities CQB05_08705 SM00530 Helix-turn-helix XRE-family like proteins CQB05_08710 SM00530 Helix-turn-helix XRE-family like proteins CQB05_08810 SM00052 Putative diguanylate phosphodiesterase CQB05_08810 SM00267 diguanylate cyclase CQB05_08815 SM00267 diguanylate cyclase CQB05_08830 SM00331 Sigma factor PP2C-like phosphatases CQB05_08835 SM00382 ATPases associated with a variety of cellular activities CQB05_08840 SM00382 ATPases associated with a variety of cellular activities CQB05_08965 SM00345 helix_turn_helix gluconate operon transcriptional repressor CQB05_08965 SM00866 CQB05_08965 CQB05_08970 SM00382 ATPases associated with a variety of cellular activities CQB05_09000 SM00331 Sigma factor PP2C-like phosphatases CQB05_09005 SM00387 Histidine kinase-like ATPases CQB05_09005 SM00388 His Kinase A (phosphoacceptor) domain CQB05_09010 SM00091 PAS domain CQB05_09010 SM00387 Histidine kinase-like ATPases CQB05_09010 SM00388 His Kinase A (phosphoacceptor) domain CQB05_09010 SM00448 cheY-homologous receiver domain CQB05_09015 SM00091 PAS domain CQB05_09015 SM00387 Histidine kinase-like ATPases CQB05_09015 SM00388 His Kinase A (phosphoacceptor) domain CQB05_09015 SM00448 cheY-homologous receiver domain CQB05_09040 SM00448 cheY-homologous receiver domain CQB05_09050 SM00642 Alpha-amylase domain CQB05_09055 SM00642 Alpha-amylase domain CQB05_09060 SM00642 Alpha-amylase domain CQB05_09075 SM00822 CQB05_09075 CQB05_09080 SM00316 Ribosomal protein S1-like RNA-binding domain CQB05_09080 SM00357 Cold shock protein domain CQB05_09080 SM00955 CQB05_09080 CQB05_09130 SM00116 Domain in cystathionine beta-synthase and other proteins. CQB05_09155 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CQB05_09155 SM00387 Histidine kinase-like ATPases CQB05_09155 SM00388 His Kinase A (phosphoacceptor) domain CQB05_09160 SM00448 cheY-homologous receiver domain CQB05_09160 SM00862 Transcriptional regulatory protein, C terminal CQB05_09210 SM00448 cheY-homologous receiver domain CQB05_09210 SM00862 Transcriptional regulatory protein, C terminal CQB05_09215 SM00387 Histidine kinase-like ATPases CQB05_09215 SM00388 His Kinase A (phosphoacceptor) domain CQB05_09240 SM00967 RNA 2'-O ribose methyltransferase substrate binding CQB05_09245 SM00382 ATPases associated with a variety of cellular activities CQB05_09285 SM00450 Rhodanese Homology Domain CQB05_09330 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain CQB05_09360 SM00382 ATPases associated with a variety of cellular activities CQB05_09385 SM00062 Bacterial periplasmic substrate-binding proteins CQB05_09455 SM00240 Forkhead associated domain CQB05_09485 SM00220 Serine/Threonine protein kinases, catalytic domain CQB05_09530 SM00100 Cyclic nucleotide-monophosphate binding domain CQB05_09530 SM00419 helix_turn_helix, cAMP Regulatory protein CQB05_09615 SM00387 Histidine kinase-like ATPases CQB05_09615 SM00388 His Kinase A (phosphoacceptor) domain CQB05_09630 SM00052 Putative diguanylate phosphodiesterase CQB05_09630 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. CQB05_09645 SM01211 CQB05_09645 CQB05_09655 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. CQB05_09685 SM00346 helix_turn_helix isocitrate lyase regulation CQB05_09695 SM00917 LeuA allosteric (dimerisation) domain CQB05_09750 SM00938 Nitrogen regulatory protein P-II CQB05_09780 SM00260 Two component signalling adaptor domain CQB05_09785 SM00882 Coenzyme A transferase CQB05_09790 SM00882 Coenzyme A transferase CQB05_09795 SM00091 PAS domain CQB05_09795 SM00421 helix_turn_helix, Lux Regulon CQB05_09835 SM00248 ankyrin repeats CQB05_09840 SM01060 CQB05_09840 CQB05_09845 SM00822 CQB05_09845 CQB05_09870 SM00382 ATPases associated with a variety of cellular activities CQB05_09875 SM00344 helix_turn_helix ASNC type CQB05_09900 SM00091 PAS domain CQB05_09900 SM00387 Histidine kinase-like ATPases CQB05_09900 SM00388 His Kinase A (phosphoacceptor) domain CQB05_09900 SM00448 cheY-homologous receiver domain CQB05_10005 SM00382 ATPases associated with a variety of cellular activities CQB05_10010 SM00382 ATPases associated with a variety of cellular activities CQB05_10045 SM00347 helix_turn_helix multiple antibiotic resistance protein CQB05_10050 SM00822 CQB05_10050 CQB05_10070 SM00091 PAS domain CQB05_10070 SM00387 Histidine kinase-like ATPases CQB05_10070 SM00388 His Kinase A (phosphoacceptor) domain CQB05_10150 SM01209 CQB05_10150 CQB05_10150 SM01210 CQB05_10150 CQB05_10180 SM00346 helix_turn_helix isocitrate lyase regulation CQB05_10190 SM00998 Adenylosuccinate lyase C-terminus CQB05_10200 SM00450 Rhodanese Homology Domain CQB05_10250 SM00862 Transcriptional regulatory protein, C terminal CQB05_10280 SM00271 DnaJ molecular chaperone homology domain CQB05_10295 SM00829 Enoylreductase CQB05_10310 SM00382 ATPases associated with a variety of cellular activities CQB05_10320 SM00479 CQB05_10320 CQB05_10330 SM00382 ATPases associated with a variety of cellular activities CQB05_10330 SM01086 C-terminal, D2-small domain, of ClpB protein CQB05_10340 SM00481 DNA polymerase alpha chain like domain CQB05_10350 SM00491 CQB05_10350 CQB05_10355 SM00331 Sigma factor PP2C-like phosphatases CQB05_10355 SM00332 Serine/threonine phosphatases, family 2C, catalytic domain CQB05_10380 SM00861 Transketolase, pyrimidine binding domain CQB05_10390 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) CQB05_10390 SM00091 PAS domain CQB05_10390 SM00267 diguanylate cyclase CQB05_10395 SM00382 ATPases associated with a variety of cellular activities CQB05_10420 SM00554 Four repeated domains in the Fasciclin I family of proteins, present in many other contexts. CQB05_10435 SM00244 prohibitin homologues CQB05_10535 SM00434 DNA Topoisomerase IV CQB05_10545 SM00830 Chorismate mutase type II CQB05_10560 SM00316 Ribosomal protein S1-like RNA-binding domain CQB05_10565 SM00411 bacterial (prokaryotic) histone like domain CQB05_10575 SM00028 Tetratricopeptide repeats CQB05_10735 SM00344 helix_turn_helix ASNC type CQB05_10760 SM00382 ATPases associated with a variety of cellular activities CQB05_10795 SM00346 helix_turn_helix isocitrate lyase regulation CQB05_10805 SM00357 Cold shock protein domain CQB05_10905 SM00487 DEAD-like helicases superfamily CQB05_10915 SM00382 ATPases associated with a variety of cellular activities CQB05_10985 SM00116 Domain in cystathionine beta-synthase and other proteins. CQB05_10985 SM01240 CQB05_10985 CQB05_11055 SM00316 Ribosomal protein S1-like RNA-binding domain CQB05_11055 SM00322 K homology RNA-binding domain CQB05_11115 SM00637 CQB05_11115 CQB05_11125 SM00477 DNA/RNA non-specific endonuclease CQB05_11125 SM00892 DNA/RNA non-specific endonuclease CQB05_11160 SM00028 Tetratricopeptide repeats CQB05_11175 SM00382 ATPases associated with a variety of cellular activities CQB05_11180 SM00248 ankyrin repeats CQB05_11245 SM00316 Ribosomal protein S1-like RNA-binding domain CQB05_11245 SM00732 Likely ribonuclease with RNase H fold. CQB05_11385 SM01207 CQB05_11385 CQB05_11400 SM00898 Formamidopyrimidine-DNA glycosylase N-terminal domain CQB05_11400 SM01232 CQB05_11400 CQB05_11490 SM00935 Outer membrane protein (OmpH-like) CQB05_11570 SM00422 helix_turn_helix, mercury resistance CQB05_11620 SM00849 Metallo-beta-lactamase superfamily CQB05_11645 SM00382 ATPases associated with a variety of cellular activities CQB05_11660 SM00487 DEAD-like helicases superfamily CQB05_11660 SM00490 helicase superfamily c-terminal domain CQB05_11665 SM00631 CQB05_11665 CQB05_11890 SM00507 HNH nucleases CQB05_11925 SM00530 Helix-turn-helix XRE-family like proteins CQB05_12295 SM00530 Helix-turn-helix XRE-family like proteins CQB05_12300 SM00530 Helix-turn-helix XRE-family like proteins CQB05_12425 SM00411 bacterial (prokaryotic) histone like domain CQB05_12435 SM00278 Helix-hairpin-helix DNA-binding motif class 1 CQB05_12435 SM00465 GIY-YIG type nucleases (URI domain) CQB05_12470 SM00382 ATPases associated with a variety of cellular activities CQB05_12515 SM00841 Elongation factor P, C-terminal CQB05_12515 SM01185 CQB05_12515 CQB05_12530 SM00729 Elongator protein 3, MiaB family, Radical SAM CQB05_12535 SM00857 Resolvase, N terminal domain CQB05_12740 SM00530 Helix-turn-helix XRE-family like proteins CQB05_12775 SM00470 ParB-like nuclease domain CQB05_12840 SM00954 Region found in RelA / SpoT proteins CQB05_12860 SM00448 cheY-homologous receiver domain CQB05_12860 SM00862 Transcriptional regulatory protein, C terminal CQB05_12865 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CQB05_12865 SM00387 Histidine kinase-like ATPases CQB05_12865 SM00388 His Kinase A (phosphoacceptor) domain CQB05_12880 SM00487 DEAD-like helicases superfamily CQB05_12880 SM00490 helicase superfamily c-terminal domain CQB05_12880 SM00982 CQB05_12880 CQB05_12880 SM01058 CarD-like/TRCF domain CQB05_12945 SM00487 DEAD-like helicases superfamily CQB05_12945 SM00490 helicase superfamily c-terminal domain CQB05_12970 SM00478 endonuclease III CQB05_12970 SM00525 CQB05_12970 CQB05_13070 SM00382 ATPases associated with a variety of cellular activities CQB05_13110 SM00052 Putative diguanylate phosphodiesterase CQB05_13110 SM00091 PAS domain CQB05_13110 SM00267 diguanylate cyclase CQB05_13125 SM00729 Elongator protein 3, MiaB family, Radical SAM CQB05_13130 SM00100 Cyclic nucleotide-monophosphate binding domain CQB05_13130 SM00419 helix_turn_helix, cAMP Regulatory protein CQB05_13225 SM00345 helix_turn_helix gluconate operon transcriptional repressor CQB05_13225 SM00895 CQB05_13225 CQB05_13285 SM00382 ATPases associated with a variety of cellular activities CQB05_13300 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CQB05_13300 SM00387 Histidine kinase-like ATPases CQB05_13300 SM00388 His Kinase A (phosphoacceptor) domain CQB05_13305 SM00448 cheY-homologous receiver domain CQB05_13305 SM00862 Transcriptional regulatory protein, C terminal CQB05_13320 SM00052 Putative diguanylate phosphodiesterase CQB05_13320 SM00267 diguanylate cyclase CQB05_13340 SM01092 CO dehydrogenase flavoprotein C-terminal domain CQB05_13345 SM01008 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain CQB05_13365 SM00382 ATPases associated with a variety of cellular activities CQB05_13365 SM01086 C-terminal, D2-small domain, of ClpB protein CQB05_13430 SM00331 Sigma factor PP2C-like phosphatases CQB05_13430 SM00332 Serine/threonine phosphatases, family 2C, catalytic domain CQB05_13445 SM00219 Tyrosine kinase, catalytic domain CQB05_13490 SM00382 ATPases associated with a variety of cellular activities CQB05_13490 SM00994 ClpX C4-type zinc finger CQB05_13490 SM01086 C-terminal, D2-small domain, of ClpB protein CQB05_13495 SM00382 ATPases associated with a variety of cellular activities CQB05_13495 SM00464 Found in ATP-dependent protease La (LON) CQB05_13570 SM00382 ATPases associated with a variety of cellular activities CQB05_13570 SM00448 cheY-homologous receiver domain CQB05_13585 SM01230 CQB05_13585 CQB05_13650 SM00788 Adenylosuccinate synthetase CQB05_13660 SM00244 prohibitin homologues CQB05_13665 SM00244 prohibitin homologues CQB05_13685 SM00564 beta-propeller repeat CQB05_13710 SM00028 Tetratricopeptide repeats CQB05_13720 SM00562 CQB05_13720 CQB05_13725 SM00363 S4 RNA-binding domain CQB05_13740 SM00257 Lysin motif CQB05_13755 SM00829 Enoylreductase CQB05_13760 SM00267 diguanylate cyclase CQB05_13780 SM00052 Putative diguanylate phosphodiesterase CQB05_13785 SM00400 zinc finger CQB05_13785 SM00493 CQB05_13785 CQB05_13795 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). CQB05_13795 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CQB05_13835 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain CQB05_13855 SM01130 CQB05_13855 CQB05_14035 SM00997 S-adenosyl-L-homocysteine hydrolase, NAD binding domain CQB05_14060 SM00849 Metallo-beta-lactamase superfamily CQB05_14100 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). CQB05_14100 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CQB05_14105 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). CQB05_14105 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CQB05_14110 SM00434 DNA Topoisomerase IV CQB05_14120 SM00387 Histidine kinase-like ATPases CQB05_14120 SM00433 TopoisomeraseII CQB05_14135 SM01130 CQB05_14135 CQB05_14145 SM00849 Metallo-beta-lactamase superfamily CQB05_14160 SM00558 A domain family that is part of the cupin metalloenzyme superfamily. CQB05_14210 SM01192 CQB05_14210 CQB05_14210 SM01193 CQB05_14210 CQB05_14240 SM00052 Putative diguanylate phosphodiesterase CQB05_14245 SM00052 Putative diguanylate phosphodiesterase CQB05_14295 SM00646 CQB05_14295 CQB05_14355 SM00382 ATPases associated with a variety of cellular activities CQB05_14415 SM00382 ATPases associated with a variety of cellular activities CQB05_14425 SM00382 ATPases associated with a variety of cellular activities CQB05_14475 SM00929 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region CQB05_14480 SM00928 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region CQB05_14525 SM00829 Enoylreductase CQB05_14530 SM00316 Ribosomal protein S1-like RNA-binding domain CQB05_14530 SM00322 K homology RNA-binding domain CQB05_14535 SM01387 CQB05_14535 CQB05_14585 SM00382 ATPases associated with a variety of cellular activities CQB05_14585 SM01086 C-terminal, D2-small domain, of ClpB protein CQB05_14615 SM01130 CQB05_14615 CQB05_14625 SM00852 Probable molybdopterin binding domain CQB05_14660 SM00670 Large family of predicted nucleotide-binding domains CQB05_14670 SM00382 ATPases associated with a variety of cellular activities CQB05_14705 SM00271 DnaJ molecular chaperone homology domain CQB05_14730 SM01329 CQB05_14730 CQB05_14740 SM00859 Semialdehyde dehydrogenase, NAD binding domain CQB05_14780 SM00464 Found in ATP-dependent protease La (LON) CQB05_14860 SM00358 Double-stranded RNA binding motif CQB05_14860 SM00535 Ribonuclease III family CQB05_14880 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. CQB05_14905 SM00825 Beta-ketoacyl synthase CQB05_14910 SM00823 Phosphopantetheine attachment site CQB05_14915 SM00822 CQB05_14915 CQB05_14920 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. CQB05_14970 SM00363 S4 RNA-binding domain CQB05_14980 SM00316 Ribosomal protein S1-like RNA-binding domain CQB05_14990 SM00702 Prolyl 4-hydroxylase alpha subunit homologues. CQB05_15050 SM00899 CQB05_15050 CQB05_15060 SM00344 helix_turn_helix ASNC type CQB05_15085 SM00052 Putative diguanylate phosphodiesterase CQB05_15085 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) CQB05_15085 SM00091 PAS domain CQB05_15085 SM00267 diguanylate cyclase CQB05_15090 SM00052 Putative diguanylate phosphodiesterase CQB05_15090 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) CQB05_15090 SM00091 PAS domain CQB05_15090 SM00267 diguanylate cyclase CQB05_15100 SM00528 Domain in histone-like proteins of HNS family CQB05_15110 SM00487 DEAD-like helicases superfamily CQB05_15110 SM00490 helicase superfamily c-terminal domain CQB05_15155 SM00342 helix_turn_helix, arabinose operon control protein CQB05_15190 SM00382 ATPases associated with a variety of cellular activities CQB05_15200 SM01092 CO dehydrogenase flavoprotein C-terminal domain CQB05_15220 SM00091 PAS domain CQB05_15220 SM00267 diguanylate cyclase CQB05_15245 SM00387 Histidine kinase-like ATPases CQB05_15245 SM01049 CQB05_15245 CQB05_15250 SM00421 helix_turn_helix, Lux Regulon CQB05_15250 SM00448 cheY-homologous receiver domain CQB05_15255 SM00052 Putative diguanylate phosphodiesterase CQB05_15255 SM00267 diguanylate cyclase CQB05_15295 SM00345 helix_turn_helix gluconate operon transcriptional repressor CQB05_15295 SM00895 CQB05_15295 CQB05_15355 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). CQB05_15355 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CQB05_15360 SM00345 helix_turn_helix gluconate operon transcriptional repressor CQB05_15360 SM00895 CQB05_15360 CQB05_15375 SM00345 helix_turn_helix gluconate operon transcriptional repressor CQB05_15375 SM00895 CQB05_15375 CQB05_15385 SM00919 Malic enzyme, NAD binding domain CQB05_15385 SM01274 CQB05_15385 CQB05_15400 SM00382 ATPases associated with a variety of cellular activities CQB05_15415 SM00822 CQB05_15415 CQB05_15455 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). CQB05_15455 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CQB05_15500 SM00382 ATPases associated with a variety of cellular activities CQB05_15510 SM00986 Uracil DNA glycosylase superfamily CQB05_15510 SM00987 UreE urease accessory protein, C-terminal domain CQB05_15535 SM00327 von Willebrand factor (vWF) type A domain CQB05_15555 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. CQB05_15740 SM00382 ATPases associated with a variety of cellular activities CQB05_15775 SM00382 ATPases associated with a variety of cellular activities CQB05_15780 SM00382 ATPases associated with a variety of cellular activities CQB05_15790 SM00062 Bacterial periplasmic substrate-binding proteins CQB05_15790 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. CQB05_15805 SM01321 CQB05_15805 CQB05_15820 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. CQB05_15835 SM00634 Bacterial Ig-like domain (group 1) CQB05_15840 SM00965 Secretin and TonB N terminus short domain CQB05_15870 SM01219 CQB05_15870 CQB05_15885 SM00849 Metallo-beta-lactamase superfamily CQB05_16020 SM00028 Tetratricopeptide repeats CQB05_16070 SM00382 ATPases associated with a variety of cellular activities CQB05_16100 SM00984 UDP binding domain CQB05_16120 SM00883 Chaperonin 10 Kd subunit CQB05_16150 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). CQB05_16150 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CQB05_16155 SM00382 ATPases associated with a variety of cellular activities CQB05_16160 SM00382 ATPases associated with a variety of cellular activities CQB05_16215 SM00855 Phosphoglycerate mutase family CQB05_16270 SM00382 ATPases associated with a variety of cellular activities CQB05_16285 SM00382 ATPases associated with a variety of cellular activities CQB05_16290 SM00563 Phosphate acyltransferases CQB05_16310 SM00732 Likely ribonuclease with RNase H fold. CQB05_16325 SM00073 Histidine Phosphotransfer domain CQB05_16325 SM00260 Two component signalling adaptor domain CQB05_16325 SM00387 Histidine kinase-like ATPases CQB05_16325 SM00448 cheY-homologous receiver domain CQB05_16325 SM01231 CQB05_16325 CQB05_16330 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). CQB05_16335 SM00260 Two component signalling adaptor domain CQB05_16340 SM00448 cheY-homologous receiver domain CQB05_16345 SM00448 cheY-homologous receiver domain CQB05_16370 SM00798 AICARFT/IMPCHase bienzyme CQB05_16370 SM00851 MGS-like domain CQB05_16385 SM00267 diguanylate cyclase CQB05_16400 SM00116 Domain in cystathionine beta-synthase and other proteins. CQB05_16445 SM00382 ATPases associated with a variety of cellular activities CQB05_16475 SM00729 Elongator protein 3, MiaB family, Radical SAM CQB05_16480 SM00387 Histidine kinase-like ATPases CQB05_16480 SM00388 His Kinase A (phosphoacceptor) domain CQB05_16490 SM00382 ATPases associated with a variety of cellular activities CQB05_16490 SM00448 cheY-homologous receiver domain CQB05_16500 SM00382 ATPases associated with a variety of cellular activities CQB05_16500 SM00962 SRP54-type protein, GTPase domain CQB05_16500 SM00963 SRP54-type protein, helical bundle domain CQB05_16515 SM00387 Histidine kinase-like ATPases CQB05_16515 SM00388 His Kinase A (phosphoacceptor) domain CQB05_16520 SM00382 ATPases associated with a variety of cellular activities CQB05_16520 SM00448 cheY-homologous receiver domain CQB05_16525 SM00644 CQB05_16525 CQB05_16560 SM00878 Biotin carboxylase C-terminal domain CQB05_16630 SM00955 CQB05_16630 CQB05_16650 SM00346 helix_turn_helix isocitrate lyase regulation CQB05_16670 SM00563 Phosphate acyltransferases CQB05_16690 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). CQB05_16690 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CQB05_16695 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). CQB05_16695 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CQB05_16710 SM00864 Tubulin/FtsZ family, GTPase domain CQB05_16710 SM00865 Tubulin/FtsZ family, C-terminal domain CQB05_16715 SM00842 Cell division protein FtsA CQB05_16785 SM00382 ATPases associated with a variety of cellular activities CQB05_16785 SM01086 C-terminal, D2-small domain, of ClpB protein CQB05_16810 SM00091 PAS domain CQB05_16810 SM00267 diguanylate cyclase CQB05_16815 SM00359 Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase CQB05_16825 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). CQB05_16865 SM00347 helix_turn_helix multiple antibiotic resistance protein CQB05_16875 SM00849 Metallo-beta-lactamase superfamily CQB05_16880 SM00363 S4 RNA-binding domain CQB05_16905 SM00382 ATPases associated with a variety of cellular activities CQB05_16915 SM00382 ATPases associated with a variety of cellular activities CQB05_16935 SM00382 ATPases associated with a variety of cellular activities CQB05_16980 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). CQB05_17005 SM00926 Molybdopterin oxidoreductase Fe4S4 domain CQB05_17095 SM00267 diguanylate cyclase CQB05_17110 SM00267 diguanylate cyclase CQB05_17135 SM00346 helix_turn_helix isocitrate lyase regulation CQB05_17195 SM00382 ATPases associated with a variety of cellular activities CQB05_17340 SM00342 helix_turn_helix, arabinose operon control protein CQB05_17410 SM00530 Helix-turn-helix XRE-family like proteins CQB05_17420 SM00470 ParB-like nuclease domain CQB05_17485 SM00306 Hint (Hedgehog/Intein) domain N-terminal region CQB05_17490 SM00947 Carbonic anhydrase CQB05_17515 SM00926 Molybdopterin oxidoreductase Fe4S4 domain CQB05_17530 SM00342 helix_turn_helix, arabinose operon control protein CQB05_17550 SM00421 helix_turn_helix, Lux Regulon CQB05_17550 SM00448 cheY-homologous receiver domain CQB05_17575 SM00052 Putative diguanylate phosphodiesterase CQB05_17575 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) CQB05_17575 SM00091 PAS domain CQB05_17575 SM00267 diguanylate cyclase CQB05_17635 SM00382 ATPases associated with a variety of cellular activities CQB05_17640 SM00100 Cyclic nucleotide-monophosphate binding domain CQB05_17660 SM00749 bacterial OsmY and nodulation domain CQB05_17695 SM00662 RNA polymerases D CQB05_17700 SM00363 S4 RNA-binding domain CQB05_17700 SM01390 CQB05_17700 CQB05_17765 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. CQB05_17770 SM01374 CQB05_17770 CQB05_17800 SM00382 ATPases associated with a variety of cellular activities CQB05_17805 SM00382 ATPases associated with a variety of cellular activities CQB05_17810 SM00420 helix_turn_helix, Deoxyribose operon repressor CQB05_17810 SM01134 CQB05_17810 CQB05_17855 SM00487 DEAD-like helicases superfamily CQB05_17855 SM00490 helicase superfamily c-terminal domain CQB05_17860 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. CQB05_17865 SM00342 helix_turn_helix, arabinose operon control protein CQB05_17890 SM00986 Uracil DNA glycosylase superfamily CQB05_17890 SM00987 UreE urease accessory protein, C-terminal domain CQB05_17930 SM00966 SpoVT / AbrB like domain CQB05_17935 SM00487 DEAD-like helicases superfamily CQB05_17935 SM00490 helicase superfamily c-terminal domain CQB05_18045 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain CQB05_18045 SM00437 Bacterial DNA topoisomerase I DNA-binding domain CQB05_18045 SM00493 CQB05_18045 CQB05_18135 SM00487 DEAD-like helicases superfamily CQB05_18270 SM00857 Resolvase, N terminal domain CQB05_18525 SM00382 ATPases associated with a variety of cellular activities CQB05_18550 SM00368 Leucine rich repeat, ribonuclease inhibitor type CQB05_18615 SM00862 Transcriptional regulatory protein, C terminal CQB05_18620 SM00342 helix_turn_helix, arabinose operon control protein CQB05_18625 SM00830 Chorismate mutase type II CQB05_18700 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). CQB05_18720 SM00382 ATPases associated with a variety of cellular activities CQB05_18730 SM00981 CQB05_18730 CQB05_18735 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). CQB05_18735 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CQB05_18750 SM00382 ATPases associated with a variety of cellular activities CQB05_18770 SM00836 DALR anticodon binding domain CQB05_18770 SM01016 Arginyl tRNA synthetase N terminal dom CQB05_18785 SM00564 beta-propeller repeat CQB05_18805 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). CQB05_18805 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CQB05_18955 SM00487 DEAD-like helicases superfamily CQB05_18955 SM00490 helicase superfamily c-terminal domain CQB05_18975 SM00382 ATPases associated with a variety of cellular activities CQB05_19025 SM00729 Elongator protein 3, MiaB family, Radical SAM CQB05_19040 SM00448 cheY-homologous receiver domain CQB05_19040 SM00862 Transcriptional regulatory protein, C terminal CQB05_19045 SM00387 Histidine kinase-like ATPases CQB05_19045 SM00388 His Kinase A (phosphoacceptor) domain CQB05_19120 SM00322 K homology RNA-binding domain CQB05_19135 SM01382 CQB05_19135 CQB05_19135 SM01383 CQB05_19135 CQB05_19155 SM01403 CQB05_19155 CQB05_19165 SM00838 Elongation factor G C-terminus CQB05_19165 SM00889 Elongation factor G, domain IV CQB05_19180 SM00936 Penicillin-binding protein 5, C-terminal domain CQB05_19205 SM01004 Delta-aminolevulinic acid dehydratase CQB05_19220 SM00347 helix_turn_helix multiple antibiotic resistance protein CQB05_19255 SM00448 cheY-homologous receiver domain CQB05_19255 SM00862 Transcriptional regulatory protein, C terminal CQB05_19260 SM00387 Histidine kinase-like ATPases CQB05_19260 SM00388 His Kinase A (phosphoacceptor) domain CQB05_19310 SM00382 ATPases associated with a variety of cellular activities CQB05_19330 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor CQB05_19340 SM00062 Bacterial periplasmic substrate-binding proteins CQB05_19350 SM00382 ATPases associated with a variety of cellular activities CQB05_19390 SM00845 GatB domain CQB05_19440 SM00849 Metallo-beta-lactamase superfamily CQB05_19460 SM00342 helix_turn_helix, arabinose operon control protein CQB05_19475 SM00448 cheY-homologous receiver domain CQB05_19475 SM00862 Transcriptional regulatory protein, C terminal CQB05_19540 SM00382 ATPases associated with a variety of cellular activities CQB05_19560 SM00346 helix_turn_helix isocitrate lyase regulation CQB05_19585 SM01005 Alanine racemase, C-terminal domain CQB05_19625 SM00945 ProQ/FINO family CQB05_19685 SM00938 Nitrogen regulatory protein P-II CQB05_19695 SM00382 ATPases associated with a variety of cellular activities CQB05_19700 SM00382 ATPases associated with a variety of cellular activities CQB05_19700 SM00448 cheY-homologous receiver domain CQB05_19705 SM00387 Histidine kinase-like ATPases CQB05_19705 SM00388 His Kinase A (phosphoacceptor) domain CQB05_19715 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). CQB05_19715 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CQB05_19750 SM00267 diguanylate cyclase CQB05_19785 SM01018 B12 binding domain CQB05_19795 SM00345 helix_turn_helix gluconate operon transcriptional repressor CQB05_19795 SM00895 CQB05_19795 CQB05_19800 SM00062 Bacterial periplasmic substrate-binding proteins CQB05_19800 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. CQB05_19815 SM00382 ATPases associated with a variety of cellular activities CQB05_19830 SM00062 Bacterial periplasmic substrate-binding proteins CQB05_19860 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain CQB05_19915 SM00839 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase CQB05_19930 SM00488 CQB05_19930 CQB05_19930 SM00491 CQB05_19930 CQB05_19950 SM00341 Helicase and RNase D C-terminal CQB05_19950 SM00487 DEAD-like helicases superfamily CQB05_19950 SM00490 helicase superfamily c-terminal domain CQB05_19950 SM00956 CQB05_19950 CQB05_19990 SM00387 Histidine kinase-like ATPases CQB05_19990 SM00388 His Kinase A (phosphoacceptor) domain CQB05_19995 SM00382 ATPases associated with a variety of cellular activities CQB05_19995 SM00448 cheY-homologous receiver domain CQB05_20015 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). CQB05_20050 SM00506 Appr-1"-p processing enzyme CQB05_20070 SM00487 DEAD-like helicases superfamily CQB05_20070 SM00490 helicase superfamily c-terminal domain CQB05_20105 SM00342 helix_turn_helix, arabinose operon control protein CQB05_20215 SM00903 Flavin reductase like domain CQB05_20240 SM00344 helix_turn_helix ASNC type CQB05_20270 SM00346 helix_turn_helix isocitrate lyase regulation CQB05_20295 SM00382 ATPases associated with a variety of cellular activities CQB05_20330 SM00729 Elongator protein 3, MiaB family, Radical SAM CQB05_20335 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). CQB05_20335 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CQB05_20450 SM00342 helix_turn_helix, arabinose operon control protein CQB05_20455 SM00903 Flavin reductase like domain CQB05_20580 SM00470 ParB-like nuclease domain CQB05_20605 SM01228 CQB05_20605 CQB05_20630 SM00382 ATPases associated with a variety of cellular activities CQB05_20650 SM00387 Histidine kinase-like ATPases CQB05_20650 SM00388 His Kinase A (phosphoacceptor) domain CQB05_20655 SM00448 cheY-homologous receiver domain CQB05_20655 SM00862 Transcriptional regulatory protein, C terminal CQB05_20675 SM00257 Lysin motif CQB05_20685 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). CQB05_20685 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CQB05_20700 SM00422 helix_turn_helix, mercury resistance CQB05_20765 SM00917 LeuA allosteric (dimerisation) domain CQB05_20775 SM00345 helix_turn_helix gluconate operon transcriptional repressor CQB05_20780 SM00479 CQB05_20780 CQB05_20795 SM00487 DEAD-like helicases superfamily CQB05_20795 SM00491 CQB05_20795 CQB05_20845 SM00387 Histidine kinase-like ATPases CQB05_20845 SM00433 TopoisomeraseII CQB05_20850 SM00480 DNA polymerase III beta subunit CQB05_20855 SM00382 ATPases associated with a variety of cellular activities CQB05_20855 SM00760 Bacterial dnaA protein helix-turn-helix domain CQB05_20870 SM01234 CQB05_20870 CQB05_20890 SM00100 Cyclic nucleotide-monophosphate binding domain CQB05_20915 SM00116 Domain in cystathionine beta-synthase and other proteins. CQB05_20935 SM00360 RNA recognition motif CQB05_20940 SM00360 RNA recognition motif CQB05_20960 SM00267 diguanylate cyclase CQB05_20980 SM00342 helix_turn_helix, arabinose operon control protein CQB05_21030 SM00650 Ribosomal RNA adenine dimethylases CQB05_21045 SM00919 Malic enzyme, NAD binding domain CQB05_21045 SM01274 CQB05_21045 CQB05_21070 SM00382 ATPases associated with a variety of cellular activities CQB05_21075 SM00382 ATPases associated with a variety of cellular activities CQB05_21095 SM00345 helix_turn_helix gluconate operon transcriptional repressor CQB05_21095 SM00895 CQB05_21095 CQB05_21100 SM00267 diguanylate cyclase CQB05_21180 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. CQB05_21180 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) CQB05_21180 SM00387 Histidine kinase-like ATPases CQB05_21180 SM00388 His Kinase A (phosphoacceptor) domain CQB05_21180 SM00448 cheY-homologous receiver domain CQB05_21190 SM00267 diguanylate cyclase CQB05_21190 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CQB05_21240 SM00267 diguanylate cyclase CQB05_21245 SM00849 Metallo-beta-lactamase superfamily CQB05_21250 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor CQB05_21290 SM00213 Ubiquitin homologues CQB05_21325 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). CQB05_21325 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CQB05_21360 SM00934 Orotidine 5'-phosphate decarboxylase / HUMPS family CQB05_21405 SM00257 Lysin motif CQB05_21415 SM00859 Semialdehyde dehydrogenase, NAD binding domain CQB05_21425 SM00881 CoA binding domain CQB05_21435 SM00331 Sigma factor PP2C-like phosphatases CQB05_21435 SM00332 Serine/threonine phosphatases, family 2C, catalytic domain CQB05_21440 SM00240 Forkhead associated domain CQB05_21490 SM01322 CQB05_21490 CQB05_21540 SM00923 MbtH-like protein CQB05_21570 SM00091 PAS domain CQB05_21570 SM00387 Histidine kinase-like ATPases CQB05_21570 SM00388 His Kinase A (phosphoacceptor) domain CQB05_21575 SM00421 helix_turn_helix, Lux Regulon CQB05_21575 SM00448 cheY-homologous receiver domain CQB05_21585 SM00925 MltA specific insert domain CQB05_21615 SM00344 helix_turn_helix ASNC type CQB05_21625 SM01323 CQB05_21625 CQB05_21650 SM00382 ATPases associated with a variety of cellular activities CQB05_21660 SM00448 cheY-homologous receiver domain CQB05_21660 SM00862 Transcriptional regulatory protein, C terminal CQB05_21710 SM00317 SET (Su(var)3-9, Enhancer-of-zeste, Trithorax) domain CQB05_21710 SM00508 Cysteine-rich motif following a subset of SET domains CQB05_21715 SM00151 SWI complex, BAF60b domains CQB05_21715 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain CQB05_21715 SM00437 Bacterial DNA topoisomerase I DNA-binding domain CQB05_21715 SM00493 CQB05_21715 CQB05_21825 SM00871 Bacterial transcription activator, effector binding domain CQB05_21845 SM00972 Spore Coat Protein U domain CQB05_21865 SM00972 Spore Coat Protein U domain CQB05_21920 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain CQB05_21940 SM00861 Transketolase, pyrimidine binding domain CQB05_21955 SM01011 Aminopeptidase P, N-terminal domain CQB05_21965 SM00014 Acid phosphatase homologues CQB05_21975 SM00448 cheY-homologous receiver domain CQB05_21975 SM00862 Transcriptional regulatory protein, C terminal CQB05_21980 SM00388 His Kinase A (phosphoacceptor) domain CQB05_22010 SM00986 Uracil DNA glycosylase superfamily CQB05_22010 SM00987 UreE urease accessory protein, C-terminal domain CQB05_22055 SM01001 AIR carboxylase CQB05_22115 SM00267 diguanylate cyclase CQB05_22235 SM00738 In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold. CQB05_22235 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. CQB05_22240 SM00649 Ribosomal protein L11/L12 CQB05_22265 SM00663 RNA polymerase I subunit A N-terminus CQB05_22285 SM00091 PAS domain CQB05_22285 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CQB05_22285 SM00387 Histidine kinase-like ATPases CQB05_22285 SM00388 His Kinase A (phosphoacceptor) domain CQB05_22290 SM00448 cheY-homologous receiver domain CQB05_22325 SM00530 Helix-turn-helix XRE-family like proteins CQB05_22345 SM00382 ATPases associated with a variety of cellular activities CQB05_22370 SM00411 bacterial (prokaryotic) histone like domain CQB05_22380 SM00897 FIST N domain CQB05_22380 SM01204 CQB05_22380 CQB05_22425 SM00530 Helix-turn-helix XRE-family like proteins CQB05_22435 SM00563 Phosphate acyltransferases CQB05_22445 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). CQB05_22460 SM00344 helix_turn_helix ASNC type CQB05_22555 SM00487 DEAD-like helicases superfamily CQB05_22555 SM00490 helicase superfamily c-terminal domain CQB05_22565 SM00347 helix_turn_helix multiple antibiotic resistance protein CQB05_22630 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain CQB05_22635 SM00829 Enoylreductase CQB05_22675 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). CQB05_22690 SM00855 Phosphoglycerate mutase family CQB05_22735 SM00345 helix_turn_helix gluconate operon transcriptional repressor CQB05_22760 SM00047 Lysozyme subfamily 2 CQB05_22810 SM00858 CQB05_22810 CQB05_22835 SM00382 ATPases associated with a variety of cellular activities CQB05_22835 SM00962 SRP54-type protein, GTPase domain CQB05_22855 SM00448 cheY-homologous receiver domain CQB05_22945 SM00382 ATPases associated with a variety of cellular activities CQB05_22995 SM00421 helix_turn_helix, Lux Regulon CQB05_22995 SM00448 cheY-homologous receiver domain CQB05_23000 SM00387 Histidine kinase-like ATPases CQB05_23000 SM00448 cheY-homologous receiver domain CQB05_23010 SM00448 cheY-homologous receiver domain CQB05_23015 SM00073 Histidine Phosphotransfer domain CQB05_23015 SM00260 Two component signalling adaptor domain CQB05_23015 SM00387 Histidine kinase-like ATPases CQB05_23015 SM01231 CQB05_23015 CQB05_23020 SM00260 Two component signalling adaptor domain CQB05_23025 SM00138 Methyltransferase, chemotaxis proteins CQB05_23035 SM00448 cheY-homologous receiver domain CQB05_23040 SM00382 ATPases associated with a variety of cellular activities CQB05_23070 SM00422 helix_turn_helix, mercury resistance CQB05_23080 SM00947 Carbonic anhydrase CQB05_23125 SM00387 Histidine kinase-like ATPases CQB05_23125 SM00388 His Kinase A (phosphoacceptor) domain CQB05_23125 SM00448 cheY-homologous receiver domain CQB05_23305 SM00382 ATPases associated with a variety of cellular activities CQB05_23320 SM00448 cheY-homologous receiver domain CQB05_23320 SM00862 Transcriptional regulatory protein, C terminal CQB05_23325 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CQB05_23325 SM00387 Histidine kinase-like ATPases CQB05_23325 SM00388 His Kinase A (phosphoacceptor) domain CQB05_23390 SM00893 Electron transfer flavoprotein domain CQB05_23395 SM00893 Electron transfer flavoprotein domain CQB05_23400 SM01007 Class II Aldolase and Adducin N-terminal domain CQB05_23410 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). CQB05_23410 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CQB05_23430 SM00155 Phospholipase D. Active site motifs. CQB05_23450 SM00100 Cyclic nucleotide-monophosphate binding domain CQB05_23450 SM00419 helix_turn_helix, cAMP Regulatory protein CQB05_23455 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). CQB05_23455 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CQB05_23465 SM00052 Putative diguanylate phosphodiesterase CQB05_23465 SM00267 diguanylate cyclase CQB05_23465 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CQB05_23470 SM00363 S4 RNA-binding domain CQB05_23485 SM00387 Histidine kinase-like ATPases CQB05_23520 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CQB05_23520 SM00387 Histidine kinase-like ATPases CQB05_23520 SM00388 His Kinase A (phosphoacceptor) domain CQB05_23520 SM00448 cheY-homologous receiver domain CQB05_23535 SM00448 cheY-homologous receiver domain CQB05_23535 SM00862 Transcriptional regulatory protein, C terminal CQB05_23545 SM00220 Serine/Threonine protein kinases, catalytic domain CQB05_23560 SM00347 helix_turn_helix multiple antibiotic resistance protein CQB05_23600 SM00903 Flavin reductase like domain CQB05_23605 SM00346 helix_turn_helix isocitrate lyase regulation CQB05_23620 SM00382 ATPases associated with a variety of cellular activities CQB05_23650 SM00354 helix_turn _helix lactose operon repressor CQB05_23680 SM00267 diguanylate cyclase CQB05_23690 SM00487 DEAD-like helicases superfamily CQB05_23690 SM00490 helicase superfamily c-terminal domain CQB05_23715 SM00278 Helix-hairpin-helix DNA-binding motif class 1 CQB05_23730 SM00382 ATPases associated with a variety of cellular activities CQB05_23745 SM01119 CQB05_23745 CQB05_23750 SM00855 Phosphoglycerate mutase family CQB05_23765 SM00387 Histidine kinase-like ATPases CQB05_23765 SM01049 CQB05_23765 CQB05_23770 SM00421 helix_turn_helix, Lux Regulon CQB05_23770 SM00448 cheY-homologous receiver domain CQB05_23785 SM00905 Dihydroneopterin aldolase CQB05_23805 SM00062 Bacterial periplasmic substrate-binding proteins CQB05_23855 SM00530 Helix-turn-helix XRE-family like proteins CQB05_23900 SM00267 diguanylate cyclase CQB05_23915 SM00849 Metallo-beta-lactamase superfamily CQB05_23935 SM00354 helix_turn _helix lactose operon repressor CQB05_23945 SM00382 ATPases associated with a variety of cellular activities CQB05_23990 SM00344 helix_turn_helix ASNC type CQB05_24000 SM00116 Domain in cystathionine beta-synthase and other proteins. CQB05_24000 SM01091 Transporter associated domain CQB05_24015 SM00870 CQB05_24015 CQB05_24025 SM00825 Beta-ketoacyl synthase CQB05_24055 SM00563 Phosphate acyltransferases CQB05_24065 SM00450 Rhodanese Homology Domain CQB05_24075 SM00257 Lysin motif CQB05_24120 SM00382 ATPases associated with a variety of cellular activities CQB05_24195 SM00382 ATPases associated with a variety of cellular activities CQB05_24230 SM00448 cheY-homologous receiver domain CQB05_24230 SM00862 Transcriptional regulatory protein, C terminal CQB05_24235 SM00387 Histidine kinase-like ATPases CQB05_24235 SM00388 His Kinase A (phosphoacceptor) domain CQB05_24350 SM00530 Helix-turn-helix XRE-family like proteins