locus-tag class description APS58_0002 PF00710 Asparaginase, N-terminal APS58_0002 PF17763 Glutaminase/Asparaginase C-terminal domain APS58_0003 PF01726 LexA DNA binding domain APS58_0003 PF00717 Peptidase S24-like APS58_0005 PF11898 Domain of unknown function (DUF3418) APS58_0005 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold APS58_0005 PF00271 Helicase conserved C-terminal domain APS58_0005 PF04408 Helicase associated domain (HA2) APS58_0005 PF00270 DEAD/DEAH box helicase APS58_0007 PF01266 FAD dependent oxidoreductase APS58_0008 PF00696 Amino acid kinase family APS58_0008 PF00583 Acetyltransferase (GNAT) family APS58_0010 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family APS58_0010 PF03466 LysR substrate binding domain APS58_0012 PF02600 Disulfide bond formation protein DsbB APS58_0013 PF12857 TOBE-like domain APS58_0013 PF00005 ABC transporter APS58_0013 PF17850 CysA C-terminal regulatory domain APS58_0014 PF00528 Binding-protein-dependent transport system inner membrane component APS58_0015 PF00528 Binding-protein-dependent transport system inner membrane component APS58_0019 PF03466 LysR substrate binding domain APS58_0019 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family APS58_0020 PF02525 Flavodoxin-like fold APS58_0021 PF03358 NADPH-dependent FMN reductase APS58_0022 PF03180 NLPA lipoprotein APS58_0023 PF00672 HAMP domain APS58_0023 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain APS58_0023 PF02203 Tar ligand binding domain homologue APS58_0024 PF00528 Binding-protein-dependent transport system inner membrane component APS58_0025 PF00005 ABC transporter APS58_0025 PF09383 NIL domain APS58_0026 PF08448 PAS fold APS58_0026 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APS58_0026 PF13188 PAS domain APS58_0026 PF00512 His Kinase A (phospho-acceptor) domain APS58_0026 PF00072 Response regulator receiver domain APS58_0027 PF07690 Major Facilitator Superfamily APS58_0028 PF03466 LysR substrate binding domain APS58_0028 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family APS58_0029 PF01451 Low molecular weight phosphotyrosine protein phosphatase APS58_0031 PF02321 Outer membrane efflux protein APS58_0032 PF00873 AcrB/AcrD/AcrF family APS58_0033 PF00529 HlyD membrane-fusion protein of T1SS APS58_0033 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion APS58_0034 PF00486 Transcriptional regulatory protein, C terminal APS58_0034 PF00072 Response regulator receiver domain APS58_0035 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APS58_0035 PF00989 PAS fold APS58_0035 PF00512 His Kinase A (phospho-acceptor) domain APS58_0035 PF18698 Histidine kinase sensor domain APS58_0035 PF00672 HAMP domain APS58_0037 PF03466 LysR substrate binding domain APS58_0037 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family APS58_0041 PF13333 Integrase core domain APS58_0041 PF13276 HTH-like domain APS58_0041 PF00665 Integrase core domain APS58_0042 PF01527 Transposase APS58_0048 PF02735 Ku70/Ku80 beta-barrel domain APS58_0049 PF01068 ATP dependent DNA ligase domain APS58_0049 PF13298 DNA polymerase Ligase (LigD) APS58_0049 PF04679 ATP dependent DNA ligase C terminal region APS58_0050 PF04055 Radical SAM superfamily APS58_0050 PF06968 Biotin and Thiamin Synthesis associated domain APS58_0054 PF00289 Biotin carboxylase, N-terminal domain APS58_0054 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain APS58_0054 PF02785 Biotin carboxylase C-terminal domain APS58_0056 PF01039 Carboxyl transferase domain APS58_0060 PF00392 Bacterial regulatory proteins, gntR family APS58_0060 PF07729 FCD domain APS58_0062 PF00873 AcrB/AcrD/AcrF family APS58_0063 PF00529 HlyD membrane-fusion protein of T1SS APS58_0063 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion APS58_0064 PF02321 Outer membrane efflux protein APS58_0072 PF00196 Bacterial regulatory proteins, luxR family APS58_0072 PF00072 Response regulator receiver domain APS58_0073 PF02203 Tar ligand binding domain homologue APS58_0073 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain APS58_0073 PF00672 HAMP domain APS58_0076 PF01609 Transposase DDE domain APS58_0076 PF05598 Transposase domain (DUF772) APS58_0079 PF01207 Dihydrouridine synthase (Dus) APS58_0080 PF00563 EAL domain APS58_0080 PF00990 Diguanylate cyclase, GGDEF domain APS58_0080 PF03707 Bacterial signalling protein N terminal repeat APS58_0083 PF04060 Putative Fe-S cluster APS58_0084 PF00672 HAMP domain APS58_0084 PF02203 Tar ligand binding domain homologue APS58_0084 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain APS58_0085 PF00155 Aminotransferase class I and II APS58_0086 PF14602 Hexapeptide repeat of succinyl-transferase APS58_0086 PF14805 Tetrahydrodipicolinate N-succinyltransferase N-terminal APS58_0087 PF00437 Type II/IV secretion system protein APS58_0088 PF01546 Peptidase family M20/M25/M40 APS58_0088 PF07687 Peptidase dimerisation domain APS58_0089 PF05175 Methyltransferase small domain APS58_0091 PF00106 short chain dehydrogenase APS58_0092 PF02803 Thiolase, C-terminal domain APS58_0092 PF00108 Thiolase, N-terminal domain APS58_0093 PF07167 Poly-beta-hydroxybutyrate polymerase (PhaC) N-terminus APS58_0096 PF13417 Glutathione S-transferase, N-terminal domain APS58_0097 PF01557 Fumarylacetoacetate (FAA) hydrolase family APS58_0099 PF00069 Protein kinase domain APS58_0100 PF00497 Bacterial extracellular solute-binding proteins, family 3 APS58_0101 PF00905 Penicillin binding protein transpeptidase domain APS58_0101 PF00912 Transglycosylase APS58_0102 PF17785 PUA-like domain APS58_0102 PF10672 S-adenosylmethionine-dependent methyltransferase APS58_0105 PF03401 Tripartite tricarboxylate transporter family receptor APS58_0107 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain APS58_0107 PF07992 Pyridine nucleotide-disulphide oxidoreductase APS58_0108 PF00364 Biotin-requiring enzyme APS58_0108 PF02817 e3 binding domain APS58_0108 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) APS58_0109 PF17831 Pyruvate dehydrogenase E1 component middle domain APS58_0109 PF00456 Transketolase, thiamine diphosphate binding domain APS58_0110 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APS58_0110 PF00989 PAS fold APS58_0110 PF00512 His Kinase A (phospho-acceptor) domain APS58_0111 PF00196 Bacterial regulatory proteins, luxR family APS58_0111 PF00072 Response regulator receiver domain APS58_0112 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain APS58_0112 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain APS58_0113 PF01432 Peptidase family M3 APS58_0115 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) APS58_0116 PF01180 Dihydroorotate dehydrogenase APS58_0120 PF01266 FAD dependent oxidoreductase APS58_0121 PF00850 Histone deacetylase domain APS58_0124 PF00929 Exonuclease APS58_0125 PF00111 2Fe-2S iron-sulfur cluster binding domain APS58_0126 PF00012 Hsp70 protein APS58_0127 PF07743 HSCB C-terminal oligomerisation domain APS58_0128 PF01521 Iron-sulphur cluster biosynthesis APS58_0129 PF01592 NifU-like N terminal domain APS58_0130 PF00266 Aminotransferase class-V APS58_0131 PF02082 Transcriptional regulator APS58_0133 PF00155 Aminotransferase class I and II APS58_0134 PF02515 CoA-transferase family III APS58_0136 PF11842 Domain of unknown function (DUF3362) APS58_0136 PF08497 Radical SAM N-terminal APS58_0136 PF04055 Radical SAM superfamily APS58_0137 PF00672 HAMP domain APS58_0137 PF02203 Tar ligand binding domain homologue APS58_0137 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain APS58_0139 PF00127 Copper binding proteins, plastocyanin/azurin family APS58_0140 PF01205 Uncharacterized protein family UPF0029 APS58_0140 PF09186 Domain of unknown function (DUF1949) APS58_0141 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain APS58_0141 PF07992 Pyridine nucleotide-disulphide oxidoreductase APS58_0143 PF01266 FAD dependent oxidoreductase APS58_0144 PF01425 Amidase APS58_0145 PF03401 Tripartite tricarboxylate transporter family receptor APS58_0146 PF00291 Pyridoxal-phosphate dependent enzyme APS58_0147 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family APS58_0147 PF03466 LysR substrate binding domain APS58_0154 PF01479 S4 domain APS58_0156 PF01339 CheB methylesterase APS58_0156 PF08448 PAS fold APS58_0156 PF03705 CheR methyltransferase, all-alpha domain APS58_0156 PF01739 CheR methyltransferase, SAM binding domain APS58_0167 PF03421 YopJ Serine/Threonine acetyltransferase APS58_0168 PF00378 Enoyl-CoA hydratase/isomerase APS58_0169 PF00850 Histone deacetylase domain APS58_0170 PF07726 ATPase family associated with various cellular activities (AAA) APS58_0170 PF17863 AAA lid domain APS58_0172 PF01841 Transglutaminase-like superfamily APS58_0172 PF13559 Domain of unknown function (DUF4129) APS58_0172 PF11992 Domain of unknown function (DUF3488) APS58_0173 PF13406 Transglycosylase SLT domain APS58_0175 PF07690 Major Facilitator Superfamily APS58_0179 PF13458 Periplasmic binding protein APS58_0182 PF00814 Glycoprotease family APS58_0183 PF13458 Periplasmic binding protein APS58_0184 PF03861 ANTAR domain APS58_0184 PF00072 Response regulator receiver domain APS58_0187 PF00528 Binding-protein-dependent transport system inner membrane component APS58_0188 PF00005 ABC transporter APS58_0189 PF01872 RibD C-terminal domain APS58_0192 PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) APS58_0194 PF01053 Cys/Met metabolism PLP-dependent enzyme APS58_0196 PF00106 short chain dehydrogenase APS58_0197 PF07722 Peptidase C26 APS58_0203 PF07690 Major Facilitator Superfamily APS58_0208 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain APS58_0208 PF00672 HAMP domain APS58_0208 PF16591 Helical bimodular sensor domain APS58_0209 PF02895 Signal transducing histidine kinase, homodimeric domain APS58_0209 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APS58_0209 PF07194 P2 response regulator binding domain APS58_0209 PF01627 Hpt domain APS58_0209 PF01584 CheW-like domain APS58_0210 PF02463 RecF/RecN/SMC N terminal domain APS58_0212 PF01204 Trehalase APS58_0213 PF00478 IMP dehydrogenase / GMP reductase domain APS58_0213 PF00571 CBS domain APS58_0214 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain APS58_0214 PF08447 PAS fold APS58_0215 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion APS58_0215 PF00529 HlyD membrane-fusion protein of T1SS APS58_0216 PF00873 AcrB/AcrD/AcrF family APS58_0217 PF02321 Outer membrane efflux protein APS58_0219 PF00672 HAMP domain APS58_0219 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain APS58_0219 PF02203 Tar ligand binding domain homologue APS58_0220 PF18267 Rubredoxin NAD+ reductase C-terminal domain APS58_0220 PF07992 Pyridine nucleotide-disulphide oxidoreductase APS58_0220 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain APS58_0220 PF01077 Nitrite and sulphite reductase 4Fe-4S domain APS58_0220 PF04324 BFD-like [2Fe-2S] binding domain APS58_0221 PF00355 Rieske [2Fe-2S] domain APS58_0222 PF00384 Molybdopterin oxidoreductase APS58_0222 PF04879 Molybdopterin oxidoreductase Fe4S4 domain APS58_0222 PF01568 Molydopterin dinucleotide binding domain APS58_0223 PF02885 Glycosyl transferase family, helical bundle domain APS58_0223 PF00591 Glycosyl transferase family, a/b domain APS58_0224 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases APS58_0225 PF00553 Cellulose binding domain APS58_0225 PF00150 Cellulase (glycosyl hydrolase family 5) APS58_0226 PF03061 Thioesterase superfamily APS58_0227 PF00484 Carbonic anhydrase APS58_0235 PF01165 Ribosomal protein S21 APS58_0236 PF09424 Yqey-like protein APS58_0237 PF00043 Glutathione S-transferase, C-terminal domain APS58_0237 PF02798 Glutathione S-transferase, N-terminal domain APS58_0239 PF03466 LysR substrate binding domain APS58_0239 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family APS58_0240 PF00180 Isocitrate/isopropylmalate dehydrogenase APS58_0241 PF01734 Patatin-like phospholipase APS58_0242 PF07690 Major Facilitator Superfamily APS58_0243 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family APS58_0243 PF03466 LysR substrate binding domain APS58_0244 PF03401 Tripartite tricarboxylate transporter family receptor APS58_0245 PF04295 D-galactarate dehydratase / Altronate hydrolase, C terminus APS58_0245 PF08666 SAF domain APS58_0246 PF00171 Aldehyde dehydrogenase family APS58_0247 PF03328 HpcH/HpaI aldolase/citrate lyase family APS58_0248 PF01523 Putative modulator of DNA gyrase APS58_0249 PF04751 Protein of unknown function (DUF615) APS58_0250 PF00994 Probable molybdopterin binding domain APS58_0251 PF00132 Bacterial transferase hexapeptide (six repeats) APS58_0252 PF00588 SpoU rRNA Methylase family APS58_0254 PF00005 ABC transporter APS58_0257 PF00459 Inositol monophosphatase family APS58_0261 PF00664 ABC transporter transmembrane region APS58_0261 PF00005 ABC transporter APS58_0263 PF00072 Response regulator receiver domain APS58_0264 PF00672 HAMP domain APS58_0264 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APS58_0264 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) APS58_0264 PF01627 Hpt domain APS58_0264 PF00072 Response regulator receiver domain APS58_0264 PF00512 His Kinase A (phospho-acceptor) domain APS58_0274 PF07715 TonB-dependent Receptor Plug Domain APS58_0274 PF00593 TonB dependent receptor APS58_0276 PF00488 MutS domain V APS58_0276 PF01624 MutS domain I APS58_0276 PF05188 MutS domain II APS58_0276 PF05190 MutS family domain IV APS58_0276 PF05192 MutS domain III APS58_0279 PF05593 RHS Repeat APS58_0279 PF03527 RHS protein APS58_0279 PF14220 Domain of unknown function (DUF4329) APS58_0280 PF04717 Type VI secretion system, phage-baseplate injector APS58_0284 PF08448 PAS fold APS58_0284 PF13426 PAS domain APS58_0284 PF00990 Diguanylate cyclase, GGDEF domain APS58_0284 PF05231 MASE1 APS58_0284 PF00563 EAL domain APS58_0284 PF08447 PAS fold APS58_0285 PF02673 Bacitracin resistance protein BacA APS58_0286 PF02321 Outer membrane efflux protein APS58_0287 PF00873 AcrB/AcrD/AcrF family APS58_0289 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion APS58_0291 PF07694 5TMR of 5TMR-LYT APS58_0291 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APS58_0291 PF06580 Histidine kinase APS58_0292 PF04397 LytTr DNA-binding domain APS58_0292 PF00072 Response regulator receiver domain APS58_0293 PF01810 LysE type translocator APS58_0297 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family APS58_0297 PF03459 TOBE domain APS58_0300 PF00528 Binding-protein-dependent transport system inner membrane component APS58_0301 PF03459 TOBE domain APS58_0301 PF00005 ABC transporter APS58_0303 PF02028 BCCT, betaine/carnitine/choline family transporter APS58_0304 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) APS58_0304 PF02806 Alpha amylase, C-terminal all-beta domain APS58_0304 PF00128 Alpha amylase, catalytic domain APS58_0305 PF00128 Alpha amylase, catalytic domain APS58_0305 PF11896 Domain of unknown function (DUF3416) APS58_0306 PF16657 Maltogenic Amylase, C-terminal domain APS58_0306 PF00128 Alpha amylase, catalytic domain APS58_0307 PF05552 Conserved TM helix APS58_0309 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component APS58_0311 PF03480 Bacterial extracellular solute-binding protein, family 7 APS58_0312 PF02779 Transketolase, pyrimidine binding domain APS58_0312 PF02780 Transketolase, C-terminal domain APS58_0312 PF13292 1-deoxy-D-xylulose-5-phosphate synthase APS58_0313 PF00348 Polyprenyl synthetase APS58_0314 PF02609 Exonuclease VII small subunit APS58_0315 PF00848 Ring hydroxylating alpha subunit (catalytic domain) APS58_0315 PF00355 Rieske [2Fe-2S] domain APS58_0317 PF00581 Rhodanese-like domain APS58_0318 PF08028 Acyl-CoA dehydrogenase, C-terminal domain APS58_0318 PF02771 Acyl-CoA dehydrogenase, N-terminal domain APS58_0319 PF02770 Acyl-CoA dehydrogenase, middle domain APS58_0319 PF02771 Acyl-CoA dehydrogenase, N-terminal domain APS58_0319 PF08028 Acyl-CoA dehydrogenase, C-terminal domain APS58_0321 PF05247 Flagellar transcriptional activator (FlhD) APS58_0322 PF05280 Flagellar transcriptional activator (FlhC) APS58_0325 PF01594 AI-2E family transporter APS58_0327 PF00311 Phosphoenolpyruvate carboxylase APS58_0328 PF03900 Porphobilinogen deaminase, C-terminal domain APS58_0328 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain APS58_0332 PF00005 ABC transporter APS58_0332 PF12848 ABC transporter APS58_0334 PF01435 Peptidase family M48 APS58_0336 PF00483 Nucleotidyl transferase APS58_0339 PF01206 Sulfurtransferase TusA APS58_0340 PF09297 NADH pyrophosphatase zinc ribbon domain APS58_0340 PF09296 NADH pyrophosphatase-like rudimentary NUDIX domain APS58_0340 PF00293 NUDIX domain APS58_0341 PF00291 Pyridoxal-phosphate dependent enzyme APS58_0350 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family APS58_0350 PF03466 LysR substrate binding domain APS58_0351 PF00441 Acyl-CoA dehydrogenase, C-terminal domain APS58_0351 PF02770 Acyl-CoA dehydrogenase, middle domain APS58_0351 PF02771 Acyl-CoA dehydrogenase, N-terminal domain APS58_0352 PF02515 CoA-transferase family III APS58_0356 PF00970 Oxidoreductase FAD-binding domain APS58_0356 PF00111 2Fe-2S iron-sulfur cluster binding domain APS58_0356 PF00175 Oxidoreductase NAD-binding domain APS58_0358 PF03401 Tripartite tricarboxylate transporter family receptor APS58_0359 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) APS58_0360 PF12626 Polymerase A arginine-rich C-terminus APS58_0360 PF01743 Poly A polymerase head domain APS58_0360 PF12627 Probable RNA and SrmB- binding site of polymerase A APS58_0362 PF00308 Bacterial dnaA protein APS58_0363 PF00586 AIR synthase related protein, N-terminal domain APS58_0363 PF02769 AIR synthase related protein, C-terminal domain APS58_0366 PF01965 DJ-1/PfpI family APS58_0367 PF01965 DJ-1/PfpI family APS58_0369 PF11799 impB/mucB/samB family C-terminal domain APS58_0369 PF00817 impB/mucB/samB family APS58_0373 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain APS58_0373 PF00672 HAMP domain APS58_0373 PF02203 Tar ligand binding domain homologue APS58_0374 PF01070 FMN-dependent dehydrogenase APS58_0376 PF00912 Transglycosylase APS58_0376 PF00905 Penicillin binding protein transpeptidase domain APS58_0376 PF14814 Bifunctional transglycosylase second domain APS58_0377 PF00672 HAMP domain APS58_0377 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain APS58_0377 PF02203 Tar ligand binding domain homologue APS58_0383 PF03401 Tripartite tricarboxylate transporter family receptor APS58_0384 PF14698 Argininosuccinate lyase C-terminal APS58_0384 PF00206 Lyase APS58_0385 PF06580 Histidine kinase APS58_0385 PF07694 5TMR of 5TMR-LYT APS58_0386 PF04397 LytTr DNA-binding domain APS58_0386 PF00072 Response regulator receiver domain APS58_0387 PF14698 Argininosuccinate lyase C-terminal APS58_0387 PF00206 Lyase APS58_0389 PF01738 Dienelactone hydrolase family APS58_0395 PF00497 Bacterial extracellular solute-binding proteins, family 3 APS58_0396 PF01266 FAD dependent oxidoreductase APS58_0397 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family APS58_0397 PF03466 LysR substrate binding domain APS58_0402 PF01612 3'-5' exonuclease APS58_0402 PF00476 DNA polymerase family A APS58_0402 PF01367 5'-3' exonuclease, C-terminal SAM fold APS58_0402 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain APS58_0404 PF01636 Phosphotransferase enzyme family APS58_0416 PF00580 UvrD/REP helicase N-terminal domain APS58_0416 PF13361 UvrD-like helicase C-terminal domain APS58_0418 PF07687 Peptidase dimerisation domain APS58_0418 PF01546 Peptidase family M20/M25/M40 APS58_0419 PF03401 Tripartite tricarboxylate transporter family receptor APS58_0421 PF00478 IMP dehydrogenase / GMP reductase domain APS58_0432 PF02954 Bacterial regulatory protein, Fis family APS58_0432 PF00072 Response regulator receiver domain APS58_0432 PF00158 Sigma-54 interaction domain APS58_0433 PF00989 PAS fold APS58_0433 PF00512 His Kinase A (phospho-acceptor) domain APS58_0433 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APS58_0433 PF16736 Single Cache-like APS58_0434 PF00309 Sigma-54 factor, Activator interacting domain (AID) APS58_0434 PF04963 Sigma-54 factor, core binding domain APS58_0434 PF04552 Sigma-54, DNA binding domain APS58_0437 PF07690 Major Facilitator Superfamily APS58_0438 PF08447 PAS fold APS58_0438 PF00990 Diguanylate cyclase, GGDEF domain APS58_0438 PF00563 EAL domain APS58_0438 PF08448 PAS fold APS58_0438 PF13426 PAS domain APS58_0438 PF05231 MASE1 APS58_0439 PF00271 Helicase conserved C-terminal domain APS58_0439 PF00270 DEAD/DEAH box helicase APS58_0440 PF00929 Exonuclease APS58_0441 PF01435 Peptidase family M48 APS58_0442 PF01329 Pterin 4 alpha carbinolamine dehydratase APS58_0443 PF03193 RsgA GTPase APS58_0444 PF03186 CobD/Cbib protein APS58_0444 PF17113 Regulatory signalling modulator protein AmpE APS58_0445 PF00293 NUDIX domain APS58_0446 PF01245 Ribosomal protein L19 APS58_0447 PF01746 tRNA (Guanine-1)-methyltransferase APS58_0448 PF05239 PRC-barrel domain APS58_0448 PF01782 RimM N-terminal domain APS58_0449 PF00886 Ribosomal protein S16 APS58_0452 PF01384 Phosphate transporter family APS58_0453 PF01865 Protein of unknown function DUF47 APS58_0454 PF01389 OmpA-like transmembrane domain APS58_0454 PF00691 OmpA family APS58_0455 PF00005 ABC transporter APS58_0456 PF12399 Branched-chain amino acid ATP-binding cassette transporter APS58_0456 PF00005 ABC transporter APS58_0457 PF02653 Branched-chain amino acid transport system / permease component APS58_0457 PF11862 Domain of unknown function (DUF3382) APS58_0458 PF02653 Branched-chain amino acid transport system / permease component APS58_0459 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain APS58_0459 PF00672 HAMP domain APS58_0459 PF02203 Tar ligand binding domain homologue APS58_0460 PF00004 ATPase family associated with various cellular activities (AAA) APS58_0460 PF16193 AAA C-terminal domain APS58_0460 PF12002 MgsA AAA+ ATPase C terminal APS58_0461 PF03167 Uracil DNA glycosylase superfamily APS58_0465 PF03548 Outer membrane lipoprotein carrier protein LolA APS58_0466 PF09397 Ftsk gamma domain APS58_0466 PF01580 FtsK/SpoIIIE family APS58_0466 PF13491 4TM region of DNA translocase FtsK/SpoIIIE APS58_0466 PF17854 FtsK alpha domain APS58_0467 PF07992 Pyridine nucleotide-disulphide oxidoreductase APS58_0468 PF00830 Ribosomal L28 family APS58_0469 PF00471 Ribosomal protein L33 APS58_0470 PF00155 Aminotransferase class I and II APS58_0470 PF00392 Bacterial regulatory proteins, gntR family APS58_0473 PF01189 16S rRNA methyltransferase RsmB/F APS58_0473 PF01029 NusB family APS58_0474 PF00544 Pectate lyase APS58_0477 PF00551 Formyl transferase APS58_0478 PF04337 Protein of unknown function, DUF480 APS58_0479 PF02770 Acyl-CoA dehydrogenase, middle domain APS58_0479 PF00441 Acyl-CoA dehydrogenase, C-terminal domain APS58_0479 PF02771 Acyl-CoA dehydrogenase, N-terminal domain APS58_0482 PF00041 Fibronectin type III domain APS58_0482 PF00553 Cellulose binding domain APS58_0482 PF00704 Glycosyl hydrolases family 18 APS58_0484 PF00672 HAMP domain APS58_0484 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain APS58_0484 PF02203 Tar ligand binding domain homologue APS58_0485 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component APS58_0487 PF03480 Bacterial extracellular solute-binding protein, family 7 APS58_0489 PF06574 FAD synthetase APS58_0489 PF01687 Riboflavin kinase APS58_0490 PF06827 Zinc finger found in FPG and IleRS APS58_0490 PF00133 tRNA synthetases class I (I, L, M and V) APS58_0490 PF08264 Anticodon-binding domain of tRNA APS58_0491 PF01252 Signal peptidase (SPase) II APS58_0494 PF00356 Bacterial regulatory proteins, lacI family APS58_0496 PF00528 Binding-protein-dependent transport system inner membrane component APS58_0497 PF00528 Binding-protein-dependent transport system inner membrane component APS58_0498 PF08402 TOBE domain APS58_0498 PF00005 ABC transporter APS58_0499 PF00149 Calcineurin-like phosphoesterase APS58_0501 PF02690 Na+/Pi-cotransporter APS58_0504 PF03466 LysR substrate binding domain APS58_0504 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family APS58_0507 PF13593 SBF-like CPA transporter family (DUF4137) APS58_0511 PF00107 Zinc-binding dehydrogenase APS58_0511 PF08240 Alcohol dehydrogenase GroES-like domain APS58_0512 PF00892 EamA-like transporter family APS58_0521 PF05593 RHS Repeat APS58_0521 PF14220 Domain of unknown function (DUF4329) APS58_0521 PF03527 RHS protein APS58_0526 PF04717 Type VI secretion system, phage-baseplate injector APS58_0527 PF00990 Diguanylate cyclase, GGDEF domain APS58_0527 PF03707 Bacterial signalling protein N terminal repeat APS58_0527 PF00563 EAL domain APS58_0530 PF00781 Diacylglycerol kinase catalytic domain APS58_0532 PF07690 Major Facilitator Superfamily APS58_0536 PF00005 ABC transporter APS58_0537 PF00005 ABC transporter APS58_0537 PF12399 Branched-chain amino acid ATP-binding cassette transporter APS58_0538 PF02653 Branched-chain amino acid transport system / permease component APS58_0539 PF02653 Branched-chain amino acid transport system / permease component APS58_0540 PF13458 Periplasmic binding protein APS58_0541 PF00375 Sodium:dicarboxylate symporter family APS58_0546 PF01292 Prokaryotic cytochrome b561 APS58_0551 PF02785 Biotin carboxylase C-terminal domain APS58_0551 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain APS58_0551 PF00364 Biotin-requiring enzyme APS58_0551 PF00289 Biotin carboxylase, N-terminal domain APS58_0552 PF02682 Carboxyltransferase domain, subdomain C and D APS58_0553 PF07286 Protein of unknown function (DUF1445) APS58_0554 PF03746 LamB/YcsF family APS58_0558 PF01494 FAD binding domain APS58_0559 PF00672 HAMP domain APS58_0559 PF00512 His Kinase A (phospho-acceptor) domain APS58_0559 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APS58_0560 PF01070 FMN-dependent dehydrogenase APS58_0565 PF00563 EAL domain APS58_0565 PF08447 PAS fold APS58_0565 PF00990 Diguanylate cyclase, GGDEF domain APS58_0565 PF08448 PAS fold APS58_0566 PF00072 Response regulator receiver domain APS58_0567 PF00512 His Kinase A (phospho-acceptor) domain APS58_0567 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APS58_0567 PF01627 Hpt domain APS58_0567 PF00072 Response regulator receiver domain APS58_0568 PF00547 Urease, gamma subunit APS58_0570 PF00699 Urease beta subunit APS58_0571 PF00449 Urease alpha-subunit, N-terminal domain APS58_0571 PF01979 Amidohydrolase family APS58_0573 PF05194 UreE urease accessory protein, C-terminal domain APS58_0573 PF02814 UreE urease accessory protein, N-terminal domain APS58_0574 PF01730 UreF APS58_0575 PF02492 CobW/HypB/UreG, nucleotide-binding domain APS58_0578 PF00004 ATPase family associated with various cellular activities (AAA) APS58_0582 PF02525 Flavodoxin-like fold APS58_0583 PF00512 His Kinase A (phospho-acceptor) domain APS58_0583 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APS58_0588 PF03705 CheR methyltransferase, all-alpha domain APS58_0588 PF01739 CheR methyltransferase, SAM binding domain APS58_0590 PF00072 Response regulator receiver domain APS58_0590 PF01339 CheB methylesterase APS58_0591 PF07963 Prokaryotic N-terminal methylation motif APS58_0591 PF14245 Type IV pilin PilA APS58_0592 PF07963 Prokaryotic N-terminal methylation motif APS58_0592 PF14245 Type IV pilin PilA APS58_0593 PF05567 Neisseria PilC beta-propeller domain APS58_0597 PF01872 RibD C-terminal domain APS58_0597 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region APS58_0599 PF00115 Cytochrome C and Quinol oxidase polypeptide I APS58_0606 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APS58_0606 PF13426 PAS domain APS58_0606 PF00072 Response regulator receiver domain APS58_0612 PF04545 Sigma-70, region 4 APS58_0612 PF04542 Sigma-70 region 2 APS58_0616 PF00106 short chain dehydrogenase APS58_0619 PF06969 HemN C-terminal domain APS58_0619 PF04055 Radical SAM superfamily APS58_0620 PF01725 Ham1 family APS58_0621 PF01138 3' exoribonuclease family, domain 1 APS58_0621 PF03725 3' exoribonuclease family, domain 2 APS58_0623 PF03793 PASTA domain APS58_0623 PF00069 Protein kinase domain APS58_0624 PF08340 Domain of unknown function (DUF1732) APS58_0624 PF03755 YicC-like family, N-terminal region APS58_0625 PF00625 Guanylate kinase APS58_0626 PF01192 RNA polymerase Rpb6 APS58_0627 PF04607 Region found in RelA / SpoT proteins APS58_0627 PF02824 TGS domain APS58_0627 PF13291 ACT domain APS58_0628 PF03449 Transcription elongation factor, N-terminal APS58_0628 PF01272 Transcription elongation factor, GreA/GreB, C-term APS58_0633 PF00553 Cellulose binding domain APS58_0633 PF03422 Carbohydrate binding module (family 6) APS58_0633 PF00331 Glycosyl hydrolase family 10 APS58_0634 PF00072 Response regulator receiver domain APS58_0634 PF00196 Bacterial regulatory proteins, luxR family APS58_0636 PF03444 Winged helix-turn-helix transcription repressor, HrcA DNA-binding APS58_0636 PF01628 HrcA protein C terminal domain APS58_0637 PF01513 ATP-NAD kinase APS58_0638 PF02463 RecF/RecN/SMC N terminal domain APS58_0639 PF03668 P-loop ATPase protein family APS58_0640 PF00730 HhH-GPD superfamily base excision DNA repair protein APS58_0640 PF14815 NUDIX domain APS58_0640 PF10576 Iron-sulfur binding domain of endonuclease III APS58_0640 PF00633 Helix-hairpin-helix motif APS58_0642 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain APS58_0642 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain APS58_0642 PF06827 Zinc finger found in FPG and IleRS APS58_0645 PF00288 GHMP kinases N terminal domain APS58_0645 PF08544 GHMP kinases C terminal APS58_0647 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase APS58_0647 PF14572 Phosphoribosyl synthetase-associated domain APS58_0648 PF14693 Ribosomal protein TL5, C-terminal domain APS58_0648 PF01386 Ribosomal L25p family APS58_0649 PF01195 Peptidyl-tRNA hydrolase APS58_0650 PF00037 4Fe-4S binding domain APS58_0651 PF00528 Binding-protein-dependent transport system inner membrane component APS58_0652 PF12911 N-terminal TM domain of oligopeptide transport permease C APS58_0652 PF00528 Binding-protein-dependent transport system inner membrane component APS58_0653 PF08352 Oligopeptide/dipeptide transporter, C-terminal region APS58_0653 PF00005 ABC transporter APS58_0654 PF08352 Oligopeptide/dipeptide transporter, C-terminal region APS58_0654 PF00005 ABC transporter APS58_0656 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle APS58_0661 PF13378 Enolase C-terminal domain-like APS58_0661 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain APS58_0662 PF03401 Tripartite tricarboxylate transporter family receptor APS58_0663 PF00356 Bacterial regulatory proteins, lacI family APS58_0663 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family APS58_0669 PF01227 GTP cyclohydrolase I APS58_0670 PF13091 PLD-like domain APS58_0673 PF00293 NUDIX domain APS58_0675 PF02938 GAD domain APS58_0675 PF01336 OB-fold nucleic acid binding domain APS58_0675 PF00152 tRNA synthetases class II (D, K and N) APS58_0680 PF03109 ABC1 family APS58_0683 PF01209 ubiE/COQ5 methyltransferase family APS58_0685 PF00990 Diguanylate cyclase, GGDEF domain APS58_0685 PF00072 Response regulator receiver domain APS58_0688 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain APS58_0688 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain APS58_0689 PF13416 Bacterial extracellular solute-binding protein APS58_0690 PF00528 Binding-protein-dependent transport system inner membrane component APS58_0691 PF00528 Binding-protein-dependent transport system inner membrane component APS58_0692 PF17912 MalK OB fold domain APS58_0692 PF00005 ABC transporter APS58_0694 PF03009 Glycerophosphoryl diester phosphodiesterase family APS58_0695 PF12795 Mechanosensitive ion channel porin domain APS58_0695 PF12794 Mechanosensitive ion channel inner membrane domain 1 APS58_0695 PF00924 Mechanosensitive ion channel APS58_0696 PF03401 Tripartite tricarboxylate transporter family receptor APS58_0702 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain APS58_0702 PF01488 Shikimate / quinate 5-dehydrogenase APS58_0702 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain APS58_0703 PF00472 RF-1 domain APS58_0703 PF03462 PCRF domain APS58_0704 PF17827 PrmC N-terminal domain APS58_0704 PF05175 Methyltransferase small domain APS58_0705 PF00462 Glutaredoxin APS58_0706 PF05362 Lon protease (S16) C-terminal proteolytic domain APS58_0706 PF00004 ATPase family associated with various cellular activities (AAA) APS58_0706 PF02190 ATP-dependent protease La (LON) substrate-binding domain APS58_0707 PF00571 CBS domain APS58_0707 PF03471 Transporter associated domain APS58_0707 PF01595 Cyclin M transmembrane N-terminal domain APS58_0708 PF11873 Membrane-bound lytic murein transglycosylase C, N-terminal domain APS58_0708 PF01464 Transglycosylase SLT domain APS58_0709 PF04073 Aminoacyl-tRNA editing domain APS58_0709 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) APS58_0709 PF03129 Anticodon binding domain APS58_0710 PF00293 NUDIX domain APS58_0711 PF00696 Amino acid kinase family APS58_0711 PF01472 PUA domain APS58_0712 PF01926 50S ribosome-binding GTPase APS58_0712 PF01018 GTP1/OBG APS58_0713 PF01016 Ribosomal L27 protein APS58_0714 PF00829 Ribosomal prokaryotic L21 protein APS58_0715 PF00348 Polyprenyl synthetase APS58_0717 PF07687 Peptidase dimerisation domain APS58_0717 PF01546 Peptidase family M20/M25/M40 APS58_0718 PF03401 Tripartite tricarboxylate transporter family receptor APS58_0719 PF03466 LysR substrate binding domain APS58_0719 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family APS58_0720 PF00437 Type II/IV secretion system protein APS58_0720 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain APS58_0721 PF00482 Type II secretion system (T2SS), protein F APS58_0722 PF06750 Bacterial Peptidase A24 N-terminal domain APS58_0722 PF01478 Type IV leader peptidase family APS58_0723 PF01121 Dephospho-CoA kinase APS58_0724 PF07072 Cell division protein APS58_0725 PF03884 DNA gyrase inhibitor YacG APS58_0726 PF00293 NUDIX domain APS58_0728 PF01960 ArgJ family APS58_0729 PF07517 SecA DEAD-like domain APS58_0729 PF02810 SEC-C motif APS58_0729 PF07516 SecA Wing and Scaffold domain APS58_0729 PF01043 SecA preprotein cross-linking domain APS58_0730 PF01551 Peptidase family M23 APS58_0730 PF08525 Opacity-associated protein A N-terminal motif APS58_0730 PF01476 LysM domain APS58_0733 PF04386 Stringent starvation protein B APS58_0734 PF00043 Glutathione S-transferase, C-terminal domain APS58_0734 PF02798 Glutathione S-transferase, N-terminal domain APS58_0735 PF02167 Cytochrome C1 family APS58_0736 PF00032 Cytochrome b(C-terminal)/b6/petD APS58_0736 PF00033 Cytochrome b/b6/petB APS58_0737 PF00355 Rieske [2Fe-2S] domain APS58_0737 PF10399 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal APS58_0738 PF01741 Large-conductance mechanosensitive channel, MscL APS58_0739 PF04166 Pyridoxal phosphate biosynthetic protein PdxA APS58_0740 PF00005 ABC transporter APS58_0741 PF12704 MacB-like periplasmic core domain APS58_0741 PF02687 FtsX-like permease family APS58_0743 PF01368 DHH family APS58_0743 PF02272 DHHA1 domain APS58_0743 PF17768 RecJ OB domain APS58_0745 PF00155 Aminotransferase class I and II APS58_0746 PF07690 Major Facilitator Superfamily APS58_0747 PF02811 PHP domain APS58_0748 PF01300 Telomere recombination APS58_0749 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain APS58_0749 PF02203 Tar ligand binding domain homologue APS58_0749 PF00672 HAMP domain APS58_0750 PF02163 Peptidase family M50 APS58_0751 PF00579 tRNA synthetases class I (W and Y) APS58_0752 PF14220 Domain of unknown function (DUF4329) APS58_0752 PF05593 RHS Repeat APS58_0752 PF03527 RHS protein APS58_0761 PF13434 L-lysine 6-monooxygenase (NADPH-requiring) APS58_0762 PF00664 ABC transporter transmembrane region APS58_0762 PF00005 ABC transporter APS58_0764 PF00551 Formyl transferase APS58_0766 PF00593 TonB dependent receptor APS58_0766 PF07715 TonB-dependent Receptor Plug Domain APS58_0767 PF00975 Thioesterase domain APS58_0767 PF00668 Condensation domain APS58_0767 PF00550 Phosphopantetheine attachment site APS58_0767 PF00501 AMP-binding enzyme APS58_0767 PF13193 AMP-binding enzyme C-terminal domain APS58_0768 PF00550 Phosphopantetheine attachment site APS58_0768 PF00668 Condensation domain APS58_0768 PF13193 AMP-binding enzyme C-terminal domain APS58_0768 PF00501 AMP-binding enzyme APS58_0769 PF00550 Phosphopantetheine attachment site APS58_0769 PF00501 AMP-binding enzyme APS58_0769 PF00668 Condensation domain APS58_0769 PF13193 AMP-binding enzyme C-terminal domain APS58_0769 PF00975 Thioesterase domain APS58_0770 PF00550 Phosphopantetheine attachment site APS58_0770 PF00698 Acyl transferase domain APS58_0770 PF00668 Condensation domain APS58_0770 PF16197 Ketoacyl-synthetase C-terminal extension APS58_0770 PF02801 Beta-ketoacyl synthase, C-terminal domain APS58_0770 PF00109 Beta-ketoacyl synthase, N-terminal domain APS58_0771 PF00668 Condensation domain APS58_0771 PF00550 Phosphopantetheine attachment site APS58_0771 PF13193 AMP-binding enzyme C-terminal domain APS58_0771 PF00501 AMP-binding enzyme APS58_0773 PF13193 AMP-binding enzyme C-terminal domain APS58_0773 PF00975 Thioesterase domain APS58_0773 PF00550 Phosphopantetheine attachment site APS58_0773 PF00668 Condensation domain APS58_0773 PF00501 AMP-binding enzyme APS58_0774 PF03621 MbtH-like protein APS58_0780 PF00012 Hsp70 protein APS58_0781 PF00012 Hsp70 protein APS58_0789 PF00654 Voltage gated chloride channel APS58_0790 PF14220 Domain of unknown function (DUF4329) APS58_0790 PF03527 RHS protein APS58_0790 PF05593 RHS Repeat APS58_0791 PF04717 Type VI secretion system, phage-baseplate injector APS58_0792 PF00675 Insulinase (Peptidase family M16) APS58_0792 PF05193 Peptidase M16 inactive domain APS58_0794 PF00528 Binding-protein-dependent transport system inner membrane component APS58_0795 PF00528 Binding-protein-dependent transport system inner membrane component APS58_0796 PF00497 Bacterial extracellular solute-binding proteins, family 3 APS58_0798 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain APS58_0799 PF00920 Dehydratase family APS58_0803 PF03707 Bacterial signalling protein N terminal repeat APS58_0803 PF00990 Diguanylate cyclase, GGDEF domain APS58_0803 PF00563 EAL domain APS58_0809 PF02403 Seryl-tRNA synthetase N-terminal domain APS58_0809 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) APS58_0810 PF00291 Pyridoxal-phosphate dependent enzyme APS58_0810 PF13291 ACT domain APS58_0812 PF01595 Cyclin M transmembrane N-terminal domain APS58_0812 PF00571 CBS domain APS58_0812 PF03471 Transporter associated domain APS58_0813 PF02401 LytB protein APS58_0814 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase APS58_0815 PF04002 RadC-like JAB domain APS58_0819 PF01713 Smr domain APS58_0819 PF00488 MutS domain V APS58_0820 PF00512 His Kinase A (phospho-acceptor) domain APS58_0820 PF00672 HAMP domain APS58_0820 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APS58_0821 PF00486 Transcriptional regulatory protein, C terminal APS58_0821 PF00072 Response regulator receiver domain APS58_0824 PF02872 5'-nucleotidase, C-terminal domain APS58_0824 PF00149 Calcineurin-like phosphoesterase APS58_0825 PF04717 Type VI secretion system, phage-baseplate injector APS58_0830 PF03527 RHS protein APS58_0830 PF05593 RHS Repeat APS58_0833 PF13683 Integrase core domain APS58_0833 PF13276 HTH-like domain APS58_0838 PF00550 Phosphopantetheine attachment site APS58_0840 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III APS58_0840 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal APS58_0841 PF01554 MatE APS58_0842 PF13193 AMP-binding enzyme C-terminal domain APS58_0842 PF00501 AMP-binding enzyme APS58_0843 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain APS58_0843 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain APS58_0848 PF03472 Autoinducer binding domain APS58_0848 PF00196 Bacterial regulatory proteins, luxR family APS58_0849 PF00765 Autoinducer synthase APS58_0850 PF02771 Acyl-CoA dehydrogenase, N-terminal domain APS58_0850 PF02770 Acyl-CoA dehydrogenase, middle domain APS58_0850 PF00441 Acyl-CoA dehydrogenase, C-terminal domain APS58_0851 PF07729 FCD domain APS58_0851 PF00392 Bacterial regulatory proteins, gntR family APS58_0853 PF01425 Amidase APS58_0854 PF13458 Periplasmic binding protein APS58_0855 PF00005 ABC transporter APS58_0856 PF12399 Branched-chain amino acid ATP-binding cassette transporter APS58_0856 PF00005 ABC transporter APS58_0857 PF02653 Branched-chain amino acid transport system / permease component APS58_0857 PF11862 Domain of unknown function (DUF3382) APS58_0858 PF02653 Branched-chain amino acid transport system / permease component APS58_0859 PF01425 Amidase APS58_0860 PF00171 Aldehyde dehydrogenase family APS58_0861 PF03466 LysR substrate binding domain APS58_0861 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family APS58_0864 PF02634 FdhD/NarQ family APS58_0865 PF00384 Molybdopterin oxidoreductase APS58_0866 PF00672 HAMP domain APS58_0866 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain APS58_0866 PF02203 Tar ligand binding domain homologue APS58_0867 PF07690 Major Facilitator Superfamily APS58_0868 PF10609 NUBPL iron-transfer P-loop NTPase APS58_0871 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain APS58_0871 PF00205 Thiamine pyrophosphate enzyme, central domain APS58_0871 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain APS58_0872 PF01588 Putative tRNA binding domain APS58_0872 PF09334 tRNA synthetases class I (M) APS58_0877 PF02616 Segregation and condensation protein ScpA APS58_0878 PF00890 FAD binding domain APS58_0878 PF02910 Fumarate reductase flavoprotein C-term APS58_0879 PF00202 Aminotransferase class-III APS58_0881 PF00155 Aminotransferase class I and II APS58_0883 PF01242 6-pyruvoyl tetrahydropterin synthase APS58_0887 PF04715 Anthranilate synthase component I, N terminal region APS58_0887 PF00425 chorismate binding enzyme APS58_0888 PF02445 Quinolinate synthetase A protein APS58_0889 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain APS58_0889 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain APS58_0890 PF02548 Ketopantoate hydroxymethyltransferase APS58_0891 PF02569 Pantoate-beta-alanine ligase APS58_0892 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus APS58_0892 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus APS58_0893 PF02556 Preprotein translocase subunit SecB APS58_0894 PF00462 Glutaredoxin APS58_0895 PF00581 Rhodanese-like domain APS58_0896 PF00300 Histidine phosphatase superfamily (branch 1) APS58_0897 PF13180 PDZ domain APS58_0897 PF03572 Peptidase family S41 APS58_0898 PF00899 ThiF family APS58_0900 PF00072 Response regulator receiver domain APS58_0900 PF00196 Bacterial regulatory proteins, luxR family APS58_0901 PF07730 Histidine kinase APS58_0901 PF05231 MASE1 APS58_0901 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APS58_0902 PF07043 Protein of unknown function (DUF1328) APS58_0906 PF10005 zinc-ribbon domain APS58_0906 PF15887 Putative zinc-binding metallo-peptidase APS58_0907 PF01467 Cytidylyltransferase-like APS58_0909 PF05193 Peptidase M16 inactive domain APS58_0910 PF00675 Insulinase (Peptidase family M16) APS58_0910 PF05193 Peptidase M16 inactive domain APS58_0911 PF02881 SRP54-type protein, helical bundle domain APS58_0911 PF00448 SRP54-type protein, GTPase domain APS58_0912 PF01557 Fumarylacetoacetate (FAA) hydrolase family APS58_0914 PF03812 2-keto-3-deoxygluconate permease APS58_0917 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain APS58_0917 PF00672 HAMP domain APS58_0917 PF02203 Tar ligand binding domain homologue APS58_0918 PF01965 DJ-1/PfpI family APS58_0918 PF12833 Helix-turn-helix domain APS58_0919 PF01965 DJ-1/PfpI family APS58_0920 PF03401 Tripartite tricarboxylate transporter family receptor APS58_0921 PF01554 MatE APS58_0922 PF01914 MarC family integral membrane protein APS58_0926 PF00528 Binding-protein-dependent transport system inner membrane component APS58_0927 PF08402 TOBE domain APS58_0927 PF00005 ABC transporter APS58_0929 PF03466 LysR substrate binding domain APS58_0929 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family APS58_0931 PF04542 Sigma-70 region 2 APS58_0931 PF00140 Sigma-70 factor, region 1.2 APS58_0931 PF04545 Sigma-70, region 4 APS58_0935 PF02630 SCO1/SenC APS58_0936 PF01040 UbiA prenyltransferase family APS58_0937 PF02628 Cytochrome oxidase assembly protein APS58_0940 PF00510 Cytochrome c oxidase subunit III APS58_0942 PF04442 Cytochrome c oxidase assembly protein CtaG/Cox11 APS58_0944 PF00115 Cytochrome C and Quinol oxidase polypeptide I APS58_0945 PF00116 Cytochrome C oxidase subunit II, periplasmic domain APS58_0945 PF02790 Cytochrome C oxidase subunit II, transmembrane domain APS58_0946 PF08241 Methyltransferase domain APS58_0948 PF00588 SpoU rRNA Methylase family APS58_0949 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family APS58_0949 PF03466 LysR substrate binding domain APS58_0952 PF13614 AAA domain APS58_0953 PF01810 LysE type translocator APS58_0954 PF02254 TrkA-N domain APS58_0954 PF00999 Sodium/hydrogen exchanger family APS58_0955 PF00593 TonB dependent receptor APS58_0955 PF07715 TonB-dependent Receptor Plug Domain APS58_0959 PF01292 Prokaryotic cytochrome b561 APS58_0960 PF12802 MarR family APS58_0961 PF00672 HAMP domain APS58_0961 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain APS58_0961 PF02203 Tar ligand binding domain homologue APS58_0962 PF07690 Major Facilitator Superfamily APS58_0963 PF00034 Cytochrome c APS58_0963 PF13442 Cytochrome C oxidase, cbb3-type, subunit III APS58_0963 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase APS58_0964 PF00111 2Fe-2S iron-sulfur cluster binding domain APS58_0964 PF01799 [2Fe-2S] binding domain APS58_0965 PF01494 FAD binding domain APS58_0966 PF17645 Arylmalonate decarboxylase APS58_0967 PF00561 alpha/beta hydrolase fold APS58_0969 PF00857 Isochorismatase family APS58_0970 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase APS58_0970 PF00034 Cytochrome c APS58_0970 PF13442 Cytochrome C oxidase, cbb3-type, subunit III APS58_0974 PF00723 Glycosyl hydrolases family 15 APS58_0975 PF03401 Tripartite tricarboxylate transporter family receptor APS58_0976 PF02426 Muconolactone delta-isomerase APS58_0977 PF02667 Short chain fatty acid transporter APS58_0978 PF00106 short chain dehydrogenase APS58_0981 PF12146 Serine aminopeptidase, S33 APS58_0982 PF00108 Thiolase, N-terminal domain APS58_0982 PF02803 Thiolase, C-terminal domain APS58_0983 PF01144 Coenzyme A transferase APS58_0984 PF01144 Coenzyme A transferase APS58_0985 PF09339 IclR helix-turn-helix domain APS58_0985 PF01614 Bacterial transcriptional regulator APS58_0990 PF00034 Cytochrome c APS58_0991 PF00004 ATPase family associated with various cellular activities (AAA) APS58_0991 PF01434 Peptidase family M41 APS58_0991 PF17862 AAA+ lid domain APS58_0995 PF04357 TamB, inner membrane protein subunit of TAM complex APS58_1001 PF13091 PLD-like domain APS58_1002 PF00512 His Kinase A (phospho-acceptor) domain APS58_1002 PF08521 Two-component sensor kinase N-terminal APS58_1002 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APS58_1003 PF00486 Transcriptional regulatory protein, C terminal APS58_1003 PF00072 Response regulator receiver domain APS58_1004 PF13180 PDZ domain APS58_1007 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily APS58_1010 PF09704 CRISPR-associated protein (Cas_Cas5) APS58_1013 PF00296 Luciferase-like monooxygenase APS58_1014 PF00482 Type II secretion system (T2SS), protein F APS58_1019 PF00005 ABC transporter APS58_1019 PF00664 ABC transporter transmembrane region APS58_1022 PF05981 CreA protein APS58_1025 PF13532 2OG-Fe(II) oxygenase superfamily APS58_1028 PF06628 Catalase-related immune-responsive APS58_1028 PF18011 C-terminal domain found in long catalases APS58_1028 PF00199 Catalase APS58_1029 PF00072 Response regulator receiver domain APS58_1029 PF00486 Transcriptional regulatory protein, C terminal APS58_1030 PF09308 LuxQ, periplasmic APS58_1030 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APS58_1030 PF00512 His Kinase A (phospho-acceptor) domain APS58_1030 PF00072 Response regulator receiver domain APS58_1031 PF01339 CheB methylesterase APS58_1032 PF01739 CheR methyltransferase, SAM binding domain APS58_1032 PF03705 CheR methyltransferase, all-alpha domain APS58_1033 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APS58_1033 PF00072 Response regulator receiver domain APS58_1033 PF00672 HAMP domain APS58_1033 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) APS58_1033 PF01627 Hpt domain APS58_1033 PF00512 His Kinase A (phospho-acceptor) domain APS58_1035 PF08448 PAS fold APS58_1035 PF00990 Diguanylate cyclase, GGDEF domain APS58_1038 PF07715 TonB-dependent Receptor Plug Domain APS58_1038 PF00593 TonB dependent receptor APS58_1040 PF00528 Binding-protein-dependent transport system inner membrane component APS58_1041 PF12911 N-terminal TM domain of oligopeptide transport permease C APS58_1041 PF00528 Binding-protein-dependent transport system inner membrane component APS58_1042 PF00005 ABC transporter APS58_1043 PF00570 HRDC domain APS58_1043 PF00270 DEAD/DEAH box helicase APS58_1043 PF00271 Helicase conserved C-terminal domain APS58_1043 PF16124 RecQ zinc-binding APS58_1043 PF09382 RQC domain APS58_1046 PF14220 Domain of unknown function (DUF4329) APS58_1046 PF14220 Domain of unknown function (DUF4329) APS58_1046 PF03527 RHS protein APS58_1046 PF05593 RHS Repeat APS58_1046 PF03527 RHS protein APS58_1046 PF05593 RHS Repeat APS58_1047 PF04717 Type VI secretion system, phage-baseplate injector APS58_1050 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain APS58_1050 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase APS58_1051 PF00941 FAD binding domain in molybdopterin dehydrogenase APS58_1051 PF03450 CO dehydrogenase flavoprotein C-terminal domain APS58_1052 PF01799 [2Fe-2S] binding domain APS58_1052 PF10518 TAT (twin-arginine translocation) pathway signal sequence APS58_1052 PF00111 2Fe-2S iron-sulfur cluster binding domain APS58_1055 PF13823 Alcohol dehydrogenase GroES-associated APS58_1055 PF00107 Zinc-binding dehydrogenase APS58_1055 PF08240 Alcohol dehydrogenase GroES-like domain APS58_1057 PF00881 Nitroreductase family APS58_1060 PF00149 Calcineurin-like phosphoesterase APS58_1060 PF02872 5'-nucleotidase, C-terminal domain APS58_1061 PF03466 LysR substrate binding domain APS58_1061 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family APS58_1062 PF03601 Conserved hypothetical protein 698 APS58_1071 PF12146 Serine aminopeptidase, S33 APS58_1073 PF10070 Uncharacterized protein conserved in bacteria (DUF2309) APS58_1074 PF00361 Proton-conducting membrane transporter APS58_1074 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus APS58_1075 PF03466 LysR substrate binding domain APS58_1075 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family APS58_1080 PF01380 SIS domain APS58_1082 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) APS58_1082 PF00072 Response regulator receiver domain APS58_1082 PF01627 Hpt domain APS58_1082 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APS58_1082 PF00512 His Kinase A (phospho-acceptor) domain APS58_1082 PF00672 HAMP domain APS58_1083 PF00132 Bacterial transferase hexapeptide (six repeats) APS58_1083 PF12804 MobA-like NTP transferase domain APS58_1084 PF00027 Cyclic nucleotide-binding domain APS58_1084 PF13545 Crp-like helix-turn-helix domain APS58_1088 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family APS58_1088 PF03466 LysR substrate binding domain APS58_1091 PF03702 Anhydro-N-acetylmuramic acid kinase APS58_1092 PF07690 Major Facilitator Superfamily APS58_1093 PF01521 Iron-sulphur cluster biosynthesis APS58_1096 PF00380 Ribosomal protein S9/S16 APS58_1097 PF00572 Ribosomal protein L13 APS58_1098 PF13360 PQQ-like domain APS58_1098 PF00069 Protein kinase domain APS58_1099 PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ APS58_1100 PF03330 Lytic transglycolase APS58_1102 PF02219 Methylenetetrahydrofolate reductase APS58_1103 PF01479 S4 domain APS58_1103 PF01728 FtsJ-like methyltransferase APS58_1104 PF05221 S-adenosyl-L-homocysteine hydrolase APS58_1104 PF00670 S-adenosyl-L-homocysteine hydrolase, NAD binding domain APS58_1105 PF01757 Acyltransferase family APS58_1106 PF16658 Class II release factor RF3, C-terminal domain APS58_1106 PF00009 Elongation factor Tu GTP binding domain APS58_1106 PF03144 Elongation factor Tu domain 2 APS58_1108 PF00893 Small Multidrug Resistance protein APS58_1112 PF03401 Tripartite tricarboxylate transporter family receptor APS58_1114 PF00005 ABC transporter APS58_1115 PF00528 Binding-protein-dependent transport system inner membrane component APS58_1116 PF00528 Binding-protein-dependent transport system inner membrane component APS58_1117 PF00497 Bacterial extracellular solute-binding proteins, family 3 APS58_1118 PF00497 Bacterial extracellular solute-binding proteins, family 3 APS58_1119 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family APS58_1119 PF03466 LysR substrate binding domain APS58_1120 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component APS58_1121 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component APS58_1122 PF03480 Bacterial extracellular solute-binding protein, family 7 APS58_1123 PF00664 ABC transporter transmembrane region APS58_1123 PF00005 ABC transporter APS58_1124 PF03061 Thioesterase superfamily APS58_1126 PF03401 Tripartite tricarboxylate transporter family receptor APS58_1127 PF00378 Enoyl-CoA hydratase/isomerase APS58_1129 PF02803 Thiolase, C-terminal domain APS58_1129 PF00108 Thiolase, N-terminal domain APS58_1133 PF00441 Acyl-CoA dehydrogenase, C-terminal domain APS58_1133 PF02771 Acyl-CoA dehydrogenase, N-terminal domain APS58_1133 PF12806 Acetyl-CoA dehydrogenase C-terminal like APS58_1133 PF02770 Acyl-CoA dehydrogenase, middle domain APS58_1135 PF00440 Bacterial regulatory proteins, tetR family APS58_1136 PF00512 His Kinase A (phospho-acceptor) domain APS58_1136 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APS58_1137 PF00072 Response regulator receiver domain APS58_1137 PF00486 Transcriptional regulatory protein, C terminal APS58_1138 PF00696 Amino acid kinase family APS58_1144 PF00005 ABC transporter APS58_1149 PF03958 Bacterial type II/III secretion system short domain APS58_1149 PF00263 Bacterial type II and III secretion system protein APS58_1155 PF07963 Prokaryotic N-terminal methylation motif APS58_1156 PF12019 Type II transport protein GspH APS58_1157 PF07963 Prokaryotic N-terminal methylation motif APS58_1157 PF08334 Type II secretion system (T2SS), protein G APS58_1158 PF00482 Type II secretion system (T2SS), protein F APS58_1159 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain APS58_1159 PF00437 Type II/IV secretion system protein APS58_1161 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase APS58_1162 PF00483 Nucleotidyl transferase APS58_1163 PF04321 RmlD substrate binding domain APS58_1164 PF16363 GDP-mannose 4,6 dehydratase APS58_1167 PF03309 Type III pantothenate kinase APS58_1168 PF04972 BON domain APS58_1168 PF01476 LysM domain APS58_1172 PF01553 Acyltransferase APS58_1175 PF02092 Glycyl-tRNA synthetase beta subunit APS58_1175 PF05746 DALR anticodon binding domain APS58_1176 PF02091 Glycyl-tRNA synthetase alpha subunit APS58_1177 PF13442 Cytochrome C oxidase, cbb3-type, subunit III APS58_1178 PF02801 Beta-ketoacyl synthase, C-terminal domain APS58_1178 PF00109 Beta-ketoacyl synthase, N-terminal domain APS58_1179 PF07977 FabA-like domain APS58_1180 PF17763 Glutaminase/Asparaginase C-terminal domain APS58_1180 PF00710 Asparaginase, N-terminal APS58_1181 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family APS58_1181 PF03466 LysR substrate binding domain APS58_1182 PF00795 Carbon-nitrogen hydrolase APS58_1183 PF00571 CBS domain APS58_1183 PF03471 Transporter associated domain APS58_1186 PF01037 Lrp/AsnC ligand binding domain APS58_1187 PF00561 alpha/beta hydrolase fold APS58_1189 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily APS58_1190 PF03401 Tripartite tricarboxylate transporter family receptor APS58_1191 PF00351 Biopterin-dependent aromatic amino acid hydroxylase APS58_1195 PF00501 AMP-binding enzyme APS58_1195 PF13193 AMP-binding enzyme C-terminal domain APS58_1196 PF13407 Periplasmic binding protein domain APS58_1197 PF00005 ABC transporter APS58_1198 PF02653 Branched-chain amino acid transport system / permease component APS58_1199 PF00356 Bacterial regulatory proteins, lacI family APS58_1200 PF00294 pfkB family carbohydrate kinase APS58_1201 PF05025 RbsD / FucU transport protein family APS58_1204 PF10145 Phage-related minor tail protein APS58_1204 PF01464 Transglycosylase SLT domain APS58_1204 PF01551 Peptidase family M23 APS58_1205 PF01812 5-formyltetrahydrofolate cyclo-ligase family APS58_1206 PF03707 Bacterial signalling protein N terminal repeat APS58_1206 PF00990 Diguanylate cyclase, GGDEF domain APS58_1206 PF00563 EAL domain APS58_1207 PF13417 Glutathione S-transferase, N-terminal domain APS58_1207 PF00043 Glutathione S-transferase, C-terminal domain APS58_1211 PF01743 Poly A polymerase head domain APS58_1211 PF01966 HD domain APS58_1211 PF12627 Probable RNA and SrmB- binding site of polymerase A APS58_1212 PF00085 Thioredoxin APS58_1213 PF02358 Trehalose-phosphatase APS58_1214 PF00723 Glycosyl hydrolases family 15 APS58_1215 PF00982 Glycosyltransferase family 20 APS58_1219 PF00497 Bacterial extracellular solute-binding proteins, family 3 APS58_1224 PF04328 Selenoprotein, putative APS58_1225 PF02554 Carbon starvation protein CstA APS58_1225 PF13722 5TM C-terminal transporter carbon starvation CstA APS58_1226 PF00072 Response regulator receiver domain APS58_1226 PF00196 Bacterial regulatory proteins, luxR family APS58_1227 PF07730 Histidine kinase APS58_1227 PF17200 Single Cache domain 2 APS58_1228 PF01171 PP-loop family APS58_1230 PF00300 Histidine phosphatase superfamily (branch 1) APS58_1231 PF14031 Putative serine dehydratase domain APS58_1231 PF01168 Alanine racemase, N-terminal domain APS58_1235 PF05496 Holliday junction DNA helicase RuvB P-loop domain APS58_1235 PF05491 RuvB C-terminal winged helix domain APS58_1235 PF17864 RuvB AAA lid domain APS58_1238 PF01330 RuvA N terminal domain APS58_1238 PF07499 RuvA, C-terminal domain APS58_1239 PF02562 PhoH-like protein APS58_1243 PF02130 Uncharacterized protein family UPF0054 APS58_1244 PF02580 D-Tyr-tRNA(Tyr) deacylase APS58_1245 PF16916 Dimerisation domain of Zinc Transporter APS58_1245 PF01545 Cation efflux family APS58_1246 PF00271 Helicase conserved C-terminal domain APS58_1246 PF03880 DbpA RNA binding domain APS58_1246 PF00270 DEAD/DEAH box helicase APS58_1247 PF01048 Phosphorylase superfamily APS58_1247 PF10423 Bacterial AMP nucleoside phosphorylase N-terminus APS58_1248 PF00990 Diguanylate cyclase, GGDEF domain APS58_1248 PF05230 MASE2 domain APS58_1251 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit APS58_1252 PF00294 pfkB family carbohydrate kinase APS58_1253 PF00391 PEP-utilising enzyme, mobile domain APS58_1253 PF00381 PTS HPr component phosphorylation site APS58_1253 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 APS58_1253 PF05524 PEP-utilising enzyme, N-terminal APS58_1253 PF02896 PEP-utilising enzyme, TIM barrel domain APS58_1254 PF00356 Bacterial regulatory proteins, lacI family APS58_1257 PF00012 Hsp70 protein APS58_1258 PF00082 Subtilase family APS58_1259 PF02222 ATP-grasp domain APS58_1260 PF00005 ABC transporter APS58_1261 PF01061 ABC-2 type transporter APS58_1262 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain APS58_1262 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain APS58_1263 PF09339 IclR helix-turn-helix domain APS58_1263 PF01614 Bacterial transcriptional regulator APS58_1264 PF01613 Flavin reductase like domain APS58_1265 PF03401 Tripartite tricarboxylate transporter family receptor APS58_1266 PF01042 Endoribonuclease L-PSP APS58_1267 PF04909 Amidohydrolase APS58_1268 PF01557 Fumarylacetoacetate (FAA) hydrolase family APS58_1269 PF01557 Fumarylacetoacetate (FAA) hydrolase family APS58_1270 PF03328 HpcH/HpaI aldolase/citrate lyase family APS58_1271 PF01047 MarR family APS58_1272 PF02566 OsmC-like protein APS58_1275 PF03793 PASTA domain APS58_1275 PF00069 Protein kinase domain APS58_1276 PF01636 Phosphotransferase enzyme family APS58_1277 PF00486 Transcriptional regulatory protein, C terminal APS58_1277 PF00072 Response regulator receiver domain APS58_1279 PF01547 Bacterial extracellular solute-binding protein APS58_1280 PF17149 Periplasmic sensor domain found in signal transduction proteins APS58_1280 PF01627 Hpt domain APS58_1280 PF00672 HAMP domain APS58_1280 PF00512 His Kinase A (phospho-acceptor) domain APS58_1280 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APS58_1280 PF00072 Response regulator receiver domain APS58_1284 PF05593 RHS Repeat APS58_1284 PF03527 RHS protein APS58_1284 PF14220 Domain of unknown function (DUF4329) APS58_1290 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APS58_1290 PF00183 Hsp90 protein APS58_1293 PF01479 S4 domain APS58_1293 PF00849 RNA pseudouridylate synthase APS58_1294 PF00563 EAL domain APS58_1294 PF00990 Diguanylate cyclase, GGDEF domain APS58_1294 PF03707 Bacterial signalling protein N terminal repeat APS58_1296 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain APS58_1296 PF02203 Tar ligand binding domain homologue APS58_1296 PF00672 HAMP domain APS58_1297 PF00027 Cyclic nucleotide-binding domain APS58_1297 PF13545 Crp-like helix-turn-helix domain APS58_1299 PF00291 Pyridoxal-phosphate dependent enzyme APS58_1300 PF03372 Endonuclease/Exonuclease/phosphatase family APS58_1301 PF13091 PLD-like domain APS58_1302 PF03706 Lysylphosphatidylglycerol synthase TM region APS58_1305 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain APS58_1305 PF00672 HAMP domain APS58_1305 PF02203 Tar ligand binding domain homologue APS58_1306 PF03401 Tripartite tricarboxylate transporter family receptor APS58_1307 PF00596 Class II Aldolase and Adducin N-terminal domain APS58_1308 PF01012 Electron transfer flavoprotein domain APS58_1308 PF00766 Electron transfer flavoprotein FAD-binding domain APS58_1309 PF01012 Electron transfer flavoprotein domain APS58_1311 PF03401 Tripartite tricarboxylate transporter family receptor APS58_1312 PF02515 CoA-transferase family III APS58_1313 PF00378 Enoyl-CoA hydratase/isomerase APS58_1314 PF00441 Acyl-CoA dehydrogenase, C-terminal domain APS58_1314 PF02770 Acyl-CoA dehydrogenase, middle domain APS58_1314 PF02771 Acyl-CoA dehydrogenase, N-terminal domain APS58_1315 PF00441 Acyl-CoA dehydrogenase, C-terminal domain APS58_1315 PF02771 Acyl-CoA dehydrogenase, N-terminal domain APS58_1315 PF02770 Acyl-CoA dehydrogenase, middle domain APS58_1316 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain APS58_1316 PF00378 Enoyl-CoA hydratase/isomerase APS58_1316 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain APS58_1317 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family APS58_1317 PF03466 LysR substrate binding domain APS58_1318 PF01435 Peptidase family M48 APS58_1321 PF01979 Amidohydrolase family APS58_1322 PF00512 His Kinase A (phospho-acceptor) domain APS58_1322 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APS58_1322 PF00672 HAMP domain APS58_1323 PF00072 Response regulator receiver domain APS58_1323 PF00486 Transcriptional regulatory protein, C terminal APS58_1324 PF02321 Outer membrane efflux protein APS58_1326 PF02687 FtsX-like permease family APS58_1326 PF00005 ABC transporter APS58_1326 PF12704 MacB-like periplasmic core domain APS58_1330 PF00892 EamA-like transporter family APS58_1332 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family APS58_1335 PF00202 Aminotransferase class-III APS58_1341 PF17760 UvrA interaction domain APS58_1341 PF17755 UvrA DNA-binding domain APS58_1341 PF00005 ABC transporter APS58_1342 PF13458 Periplasmic binding protein APS58_1344 PF13609 Gram-negative porin APS58_1345 PF13609 Gram-negative porin APS58_1346 PF00083 Sugar (and other) transporter APS58_1346 PF08946 Osmosensory transporter coiled coil APS58_1347 PF01323 DSBA-like thioredoxin domain APS58_1350 PF00682 HMGL-like APS58_1351 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain APS58_1352 PF00289 Biotin carboxylase, N-terminal domain APS58_1352 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain APS58_1352 PF02785 Biotin carboxylase C-terminal domain APS58_1352 PF00364 Biotin-requiring enzyme APS58_1354 PF00378 Enoyl-CoA hydratase/isomerase APS58_1355 PF01039 Carboxyl transferase domain APS58_1356 PF00501 AMP-binding enzyme APS58_1356 PF13193 AMP-binding enzyme C-terminal domain APS58_1360 PF13419 Haloacid dehalogenase-like hydrolase APS58_1361 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APS58_1361 PF01627 Hpt domain APS58_1361 PF00072 Response regulator receiver domain APS58_1361 PF00512 His Kinase A (phospho-acceptor) domain APS58_1364 PF03575 Peptidase family S51 APS58_1365 PF00441 Acyl-CoA dehydrogenase, C-terminal domain APS58_1365 PF02770 Acyl-CoA dehydrogenase, middle domain APS58_1365 PF02771 Acyl-CoA dehydrogenase, N-terminal domain APS58_1368 PF00108 Thiolase, N-terminal domain APS58_1368 PF02803 Thiolase, C-terminal domain APS58_1369 PF06315 Isocitrate dehydrogenase kinase/phosphatase (AceK) APS58_1370 PF00484 Carbonic anhydrase APS58_1371 PF02771 Acyl-CoA dehydrogenase, N-terminal domain APS58_1371 PF00441 Acyl-CoA dehydrogenase, C-terminal domain APS58_1371 PF02770 Acyl-CoA dehydrogenase, middle domain APS58_1373 PF13411 MerR HTH family regulatory protein APS58_1380 PF00072 Response regulator receiver domain APS58_1380 PF01339 CheB methylesterase APS58_1381 PF03975 CheD chemotactic sensory transduction APS58_1382 PF01739 CheR methyltransferase, SAM binding domain APS58_1382 PF03705 CheR methyltransferase, all-alpha domain APS58_1383 PF01584 CheW-like domain APS58_1384 PF09078 CheY binding APS58_1384 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APS58_1384 PF02895 Signal transducing histidine kinase, homodimeric domain APS58_1384 PF01584 CheW-like domain APS58_1384 PF01627 Hpt domain APS58_1385 PF00072 Response regulator receiver domain APS58_1387 PF05231 MASE1 APS58_1387 PF07730 Histidine kinase APS58_1387 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APS58_1388 PF00072 Response regulator receiver domain APS58_1388 PF00196 Bacterial regulatory proteins, luxR family APS58_1389 PF01311 Bacterial export proteins, family 1 APS58_1390 PF01313 Bacterial export proteins, family 3 APS58_1391 PF00813 FliP family APS58_1393 PF16973 Flagellar motor switch protein FliN N-terminal APS58_1393 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term APS58_1394 PF02154 Flagellar motor switch protein FliM APS58_1394 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term APS58_1395 PF03748 Flagellar basal body-associated protein FliL APS58_1398 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain APS58_1398 PF18269 T3SS EscN ATPase C-terminal domain APS58_1400 PF14841 FliG middle domain APS58_1400 PF01706 FliG C-terminal domain APS58_1400 PF14842 FliG N-terminal domain APS58_1401 PF08345 Flagellar M-ring protein C-terminal APS58_1401 PF01514 Secretory protein of YscJ/FliF family APS58_1404 PF02561 Flagellar protein FliS APS58_1405 PF07195 Flagellar hook-associated protein 2 C-terminus APS58_1405 PF07196 Flagellin hook IN motif APS58_1405 PF02465 Flagellar hook-associated protein 2 N-terminus APS58_1406 PF00669 Bacterial flagellin N-terminal helical region APS58_1406 PF00700 Bacterial flagellin C-terminal helical region APS58_1407 PF00700 Bacterial flagellin C-terminal helical region APS58_1407 PF00669 Bacterial flagellin N-terminal helical region APS58_1408 PF08889 WbqC-like protein family APS58_1409 PF13649 Methyltransferase domain APS58_1411 PF01266 FAD dependent oxidoreductase APS58_1412 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family APS58_1413 PF00535 Glycosyl transferase family 2 APS58_1414 PF01618 MotA/TolQ/ExbB proton channel family APS58_1415 PF13677 Membrane MotB of proton-channel complex MotA/MotB APS58_1415 PF00691 OmpA family APS58_1416 PF00072 Response regulator receiver domain APS58_1417 PF04344 Chemotaxis phosphatase, CheZ APS58_1418 PF01312 FlhB HrpN YscU SpaS Family APS58_1419 PF00771 FHIPEP family APS58_1420 PF00448 SRP54-type protein, GTPase domain APS58_1422 PF04542 Sigma-70 region 2 APS58_1422 PF04539 Sigma-70 region 3 APS58_1422 PF04545 Sigma-70, region 4 APS58_1426 PF00460 Flagella basal body rod protein APS58_1427 PF06429 Flagellar basal body rod FlgEFG protein C-terminal APS58_1427 PF00460 Flagella basal body rod protein APS58_1428 PF13861 FlgD Tudor-like domain APS58_1428 PF13860 FlgD Ig-like domain APS58_1428 PF03963 Flagellar hook capping protein - N-terminal region APS58_1429 PF06429 Flagellar basal body rod FlgEFG protein C-terminal APS58_1429 PF07559 Flagellar basal body protein FlaE APS58_1429 PF00460 Flagella basal body rod protein APS58_1430 PF06429 Flagellar basal body rod FlgEFG protein C-terminal APS58_1430 PF00460 Flagella basal body rod protein APS58_1431 PF00460 Flagella basal body rod protein APS58_1431 PF06429 Flagellar basal body rod FlgEFG protein C-terminal APS58_1432 PF02107 Flagellar L-ring protein APS58_1434 PF02119 Flagellar P-ring protein APS58_1435 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase APS58_1435 PF10135 Rod binding protein APS58_1436 PF00460 Flagella basal body rod protein APS58_1436 PF06429 Flagellar basal body rod FlgEFG protein C-terminal APS58_1437 PF00700 Bacterial flagellin C-terminal helical region APS58_1437 PF00669 Bacterial flagellin N-terminal helical region APS58_1440 PF00155 Aminotransferase class I and II APS58_1440 PF00392 Bacterial regulatory proteins, gntR family APS58_1441 PF01810 LysE type translocator APS58_1442 PF00892 EamA-like transporter family APS58_1443 PF00155 Aminotransferase class I and II APS58_1444 PF13417 Glutathione S-transferase, N-terminal domain APS58_1444 PF00043 Glutathione S-transferase, C-terminal domain APS58_1445 PF02567 Phenazine biosynthesis-like protein APS58_1447 PF00291 Pyridoxal-phosphate dependent enzyme APS58_1453 PF00672 HAMP domain APS58_1453 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain APS58_1453 PF02203 Tar ligand binding domain homologue APS58_1459 PF01970 Tripartite tricarboxylate transporter TctA family APS58_1463 PF00107 Zinc-binding dehydrogenase APS58_1463 PF08240 Alcohol dehydrogenase GroES-like domain APS58_1464 PF02272 DHHA1 domain APS58_1464 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain APS58_1464 PF01411 tRNA synthetases class II (A) APS58_1471 PF03741 Integral membrane protein TerC family APS58_1472 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family APS58_1472 PF03466 LysR substrate binding domain APS58_1477 PF00884 Sulfatase APS58_1477 PF16385 Domain of unknown function APS58_1478 PF03401 Tripartite tricarboxylate transporter family receptor APS58_1480 PF01208 Uroporphyrinogen decarboxylase (URO-D) APS58_1481 PF18074 Primosomal protein N C-terminal domain APS58_1481 PF17764 3′ DNA-binding domain (3′BD) APS58_1481 PF00270 DEAD/DEAH box helicase APS58_1481 PF00271 Helicase conserved C-terminal domain APS58_1481 PF18319 PriA DNA helicase Cys-rich region (CRR) domain APS58_1485 PF13361 UvrD-like helicase C-terminal domain APS58_1485 PF00580 UvrD/REP helicase N-terminal domain APS58_1486 PF02253 Phospholipase A1 APS58_1488 PF00582 Universal stress protein family APS58_1489 PF01702 Queuine tRNA-ribosyltransferase APS58_1502 PF00291 Pyridoxal-phosphate dependent enzyme APS58_1504 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain APS58_1504 PF00672 HAMP domain APS58_1504 PF02203 Tar ligand binding domain homologue APS58_1512 PF03401 Tripartite tricarboxylate transporter family receptor APS58_1513 PF13454 FAD-NAD(P)-binding APS58_1515 PF01266 FAD dependent oxidoreductase APS58_1519 PF13350 Tyrosine phosphatase family APS58_1522 PF00528 Binding-protein-dependent transport system inner membrane component APS58_1523 PF00005 ABC transporter APS58_1526 PF04244 Deoxyribodipyrimidine photo-lyase-related protein APS58_1529 PF13391 HNH endonuclease APS58_1531 PF07995 Glucose / Sorbosone dehydrogenase APS58_1532 PF00080 Copper/zinc superoxide dismutase (SODC) APS58_1535 PF00072 Response regulator receiver domain APS58_1535 PF00158 Sigma-54 interaction domain APS58_1535 PF02954 Bacterial regulatory protein, Fis family APS58_1536 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APS58_1536 PF00512 His Kinase A (phospho-acceptor) domain APS58_1536 PF00672 HAMP domain APS58_1536 PF00989 PAS fold APS58_1538 PF01189 16S rRNA methyltransferase RsmB/F APS58_1538 PF01029 NusB family APS58_1540 PF00623 RNA polymerase Rpb1, domain 2 APS58_1540 PF04997 RNA polymerase Rpb1, domain 1 APS58_1540 PF04983 RNA polymerase Rpb1, domain 3 APS58_1540 PF05000 RNA polymerase Rpb1, domain 4 APS58_1540 PF04998 RNA polymerase Rpb1, domain 5 APS58_1541 PF04560 RNA polymerase Rpb2, domain 7 APS58_1541 PF04563 RNA polymerase beta subunit APS58_1541 PF10385 RNA polymerase beta subunit external 1 domain APS58_1541 PF04561 RNA polymerase Rpb2, domain 2 APS58_1541 PF04565 RNA polymerase Rpb2, domain 3 APS58_1541 PF00562 RNA polymerase Rpb2, domain 6 APS58_1542 PF00542 Ribosomal protein L7/L12 C-terminal domain APS58_1542 PF16320 Ribosomal protein L7/L12 dimerisation domain APS58_1543 PF00466 Ribosomal protein L10 APS58_1545 PF00687 Ribosomal protein L1p/L10e family APS58_1546 PF03946 Ribosomal protein L11, N-terminal domain APS58_1546 PF00298 Ribosomal protein L11, RNA binding domain APS58_1547 PF00467 KOW motif APS58_1547 PF02357 Transcription termination factor nusG APS58_1548 PF00584 SecE/Sec61-gamma subunits of protein translocation complex APS58_1550 PF03143 Elongation factor Tu C-terminal domain APS58_1550 PF03144 Elongation factor Tu domain 2 APS58_1550 PF00009 Elongation factor Tu GTP binding domain APS58_1559 PF02951 Prokaryotic glutathione synthetase, N-terminal domain APS58_1559 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain APS58_1560 PF03594 Benzoate membrane transport protein APS58_1561 PF02705 K+ potassium transporter APS58_1563 PF02386 Cation transport protein APS58_1564 PF02080 TrkA-C domain APS58_1564 PF02254 TrkA-N domain APS58_1565 PF00171 Aldehyde dehydrogenase family APS58_1569 PF13603 Leucyl-tRNA synthetase, Domain 2 APS58_1569 PF00133 tRNA synthetases class I (I, L, M and V) APS58_1569 PF08264 Anticodon-binding domain of tRNA APS58_1569 PF09334 tRNA synthetases class I (M) APS58_1571 PF03707 Bacterial signalling protein N terminal repeat APS58_1571 PF00990 Diguanylate cyclase, GGDEF domain APS58_1571 PF00563 EAL domain APS58_1571 PF13188 PAS domain APS58_1572 PF02472 Biopolymer transport protein ExbD/TolR APS58_1573 PF01618 MotA/TolQ/ExbB proton channel family APS58_1575 PF04355 SmpA / OmlA family APS58_1576 PF01475 Ferric uptake regulator family APS58_1577 PF02603 HPr Serine kinase N terminus APS58_1577 PF07475 HPr Serine kinase C-terminal domain APS58_1578 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 APS58_1579 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein APS58_1580 PF01259 SAICAR synthetase APS58_1582 PF00085 Thioredoxin APS58_1583 PF00731 AIR carboxylase APS58_1584 PF02222 ATP-grasp domain APS58_1584 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain APS58_1585 PF03481 Putative GTP-binding controlling metal-binding APS58_1585 PF01300 Telomere recombination APS58_1590 PF00814 Glycoprotease family APS58_1593 PF01544 CorA-like Mg2+ transporter protein APS58_1594 PF01048 Phosphorylase superfamily APS58_1595 PF13193 AMP-binding enzyme C-terminal domain APS58_1595 PF00501 AMP-binding enzyme APS58_1597 PF01116 Fructose-bisphosphate aldolase class-II APS58_1598 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APS58_1598 PF00512 His Kinase A (phospho-acceptor) domain APS58_1599 PF00486 Transcriptional regulatory protein, C terminal APS58_1599 PF00072 Response regulator receiver domain APS58_1602 PF00224 Pyruvate kinase, barrel domain APS58_1602 PF02887 Pyruvate kinase, alpha/beta domain APS58_1603 PF05195 Aminopeptidase P, N-terminal domain APS58_1603 PF00557 Metallopeptidase family M24 APS58_1604 PF00483 Nucleotidyl transferase APS58_1605 PF02675 S-adenosylmethionine decarboxylase APS58_1606 PF02779 Transketolase, pyrimidine binding domain APS58_1606 PF02780 Transketolase, C-terminal domain APS58_1606 PF00456 Transketolase, thiamine diphosphate binding domain APS58_1610 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain APS58_1610 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain APS58_1612 PF03466 LysR substrate binding domain APS58_1612 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family APS58_1614 PF05736 OprF membrane domain APS58_1614 PF00691 OmpA family APS58_1619 PF07722 Peptidase C26 APS58_1626 PF05726 Pirin C-terminal cupin domain APS58_1626 PF02678 Pirin APS58_1630 PF00924 Mechanosensitive ion channel APS58_1633 PF00106 short chain dehydrogenase APS58_1637 PF06983 3-demethylubiquinone-9 3-methyltransferase APS58_1643 PF00580 UvrD/REP helicase N-terminal domain APS58_1643 PF13361 UvrD-like helicase C-terminal domain APS58_1647 PF06271 RDD family APS58_1653 PF01751 Toprim domain APS58_1653 PF01131 DNA topoisomerase APS58_1655 PF03099 Biotin/lipoate A/B protein ligase family APS58_1655 PF08279 HTH domain APS58_1655 PF02237 Biotin protein ligase C terminal domain APS58_1660 PF03401 Tripartite tricarboxylate transporter family receptor APS58_1663 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APS58_1663 PF08521 Two-component sensor kinase N-terminal APS58_1663 PF00512 His Kinase A (phospho-acceptor) domain APS58_1664 PF00486 Transcriptional regulatory protein, C terminal APS58_1664 PF00072 Response regulator receiver domain APS58_1666 PF00154 recA bacterial DNA recombination protein APS58_1667 PF02631 RecX family APS58_1669 PF02355 Protein export membrane protein APS58_1669 PF07549 SecD/SecF GG Motif APS58_1670 PF07549 SecD/SecF GG Motif APS58_1670 PF13721 SecD export protein N-terminal TM region APS58_1670 PF02355 Protein export membrane protein APS58_1671 PF02699 Preprotein translocase subunit APS58_1673 PF01037 Lrp/AsnC ligand binding domain APS58_1675 PF05977 Transmembrane secretion effector APS58_1679 PF06725 3D domain APS58_1679 PF03562 MltA specific insert domain APS58_1681 PF00691 OmpA family APS58_1681 PF04972 BON domain APS58_1682 PF00072 Response regulator receiver domain APS58_1682 PF00196 Bacterial regulatory proteins, luxR family APS58_1683 PF00512 His Kinase A (phospho-acceptor) domain APS58_1683 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APS58_1683 PF00989 PAS fold APS58_1684 PF00795 Carbon-nitrogen hydrolase APS58_1686 PF03710 Glutamate-ammonia ligase adenylyltransferase APS58_1686 PF08335 GlnD PII-uridylyltransferase APS58_1687 PF13193 AMP-binding enzyme C-terminal domain APS58_1687 PF00501 AMP-binding enzyme APS58_1687 PF00975 Thioesterase domain APS58_1687 PF00550 Phosphopantetheine attachment site APS58_1687 PF00668 Condensation domain APS58_1690 PF08361 MAATS-type transcriptional repressor, C-terminal region APS58_1690 PF00440 Bacterial regulatory proteins, tetR family APS58_1691 PF02321 Outer membrane efflux protein APS58_1692 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion APS58_1693 PF00873 AcrB/AcrD/AcrF family APS58_1695 PF01966 HD domain APS58_1695 PF11871 Domain of unknown function (DUF3391) APS58_1696 PF00255 Glutathione peroxidase APS58_1697 PF00043 Glutathione S-transferase, C-terminal domain APS58_1697 PF13417 Glutathione S-transferase, N-terminal domain APS58_1698 PF08328 Adenylosuccinate lyase C-terminal APS58_1698 PF00206 Lyase APS58_1699 PF07152 YaeQ protein APS58_1702 PF03741 Integral membrane protein TerC family APS58_1704 PF04020 Mycobacterial 4 TMS phage holin, superfamily IV APS58_1705 PF01435 Peptidase family M48 APS58_1705 PF13181 Tetratricopeptide repeat APS58_1706 PF01967 MoaC family APS58_1708 PF04932 O-Antigen ligase APS58_1708 PF15864 Protein glycosylation ligase APS58_1708 PF11846 Virulence factor membrane-bound polymerase, C-terminal APS58_1709 PF07963 Prokaryotic N-terminal methylation motif APS58_1709 PF00114 Pilin (bacterial filament) APS58_1710 PF12773 Double zinc ribbon APS58_1710 PF00498 FHA domain APS58_1712 PF03741 Integral membrane protein TerC family APS58_1713 PF00549 CoA-ligase APS58_1713 PF02629 CoA binding domain APS58_1714 PF08442 ATP-grasp domain APS58_1714 PF00549 CoA-ligase APS58_1715 PF01118 Semialdehyde dehydrogenase, NAD binding domain APS58_1716 PF02481 DNA recombination-mediator protein A APS58_1716 PF17782 DprA winged helix domain APS58_1718 PF01327 Polypeptide deformylase APS58_1720 PF00551 Formyl transferase APS58_1720 PF02911 Formyl transferase, C-terminal domain APS58_1723 PF00162 Phosphoglycerate kinase APS58_1725 PF00892 EamA-like transporter family APS58_1726 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family APS58_1727 PF01757 Acyltransferase family APS58_1729 PF03401 Tripartite tricarboxylate transporter family receptor APS58_1731 PF00893 Small Multidrug Resistance protein APS58_1732 PF00892 EamA-like transporter family APS58_1733 PF00672 HAMP domain APS58_1733 PF02203 Tar ligand binding domain homologue APS58_1733 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain APS58_1738 PF17760 UvrA interaction domain APS58_1738 PF17755 UvrA DNA-binding domain APS58_1741 PF07690 Major Facilitator Superfamily APS58_1742 PF00654 Voltage gated chloride channel APS58_1743 PF00436 Single-strand binding protein family APS58_1748 PF04143 Sulphur transport APS58_1750 PF00753 Metallo-beta-lactamase superfamily APS58_1751 PF00990 Diguanylate cyclase, GGDEF domain APS58_1751 PF13185 GAF domain APS58_1751 PF00563 EAL domain APS58_1755 PF02652 L-lactate permease APS58_1757 PF00293 NUDIX domain APS58_1762 PF08448 PAS fold APS58_1762 PF00990 Diguanylate cyclase, GGDEF domain APS58_1763 PF00677 Lumazine binding domain APS58_1764 PF00072 Response regulator receiver domain APS58_1764 PF13188 PAS domain APS58_1764 PF08448 PAS fold APS58_1764 PF00512 His Kinase A (phospho-acceptor) domain APS58_1764 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APS58_1769 PF08546 Ketopantoate reductase PanE/ApbA C terminal APS58_1769 PF02558 Ketopantoate reductase PanE/ApbA APS58_1777 PF03466 LysR substrate binding domain APS58_1777 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family APS58_1778 PF00202 Aminotransferase class-III APS58_1780 PF00171 Aldehyde dehydrogenase family APS58_1782 PF00990 Diguanylate cyclase, GGDEF domain APS58_1782 PF00072 Response regulator receiver domain APS58_1783 PF07729 FCD domain APS58_1783 PF00392 Bacterial regulatory proteins, gntR family APS58_1785 PF02653 Branched-chain amino acid transport system / permease component APS58_1786 PF11862 Domain of unknown function (DUF3382) APS58_1786 PF02653 Branched-chain amino acid transport system / permease component APS58_1787 PF12399 Branched-chain amino acid ATP-binding cassette transporter APS58_1787 PF00005 ABC transporter APS58_1788 PF00005 ABC transporter APS58_1789 PF01546 Peptidase family M20/M25/M40 APS58_1789 PF07687 Peptidase dimerisation domain APS58_1790 PF07171 MlrC C-terminus APS58_1790 PF07364 Metallopeptidase family M81 APS58_1793 PF00390 Malic enzyme, N-terminal domain APS58_1793 PF03949 Malic enzyme, NAD binding domain APS58_1793 PF01515 Phosphate acetyl/butaryl transferase APS58_1794 PF00545 ribonuclease APS58_1796 PF00398 Ribosomal RNA adenine dimethylase APS58_1797 PF00639 PPIC-type PPIASE domain APS58_1797 PF09312 SurA N-terminal domain APS58_1798 PF04453 LPS transport system D APS58_1799 PF01636 Phosphotransferase enzyme family APS58_1800 PF04452 RNA methyltransferase APS58_1803 PF02463 RecF/RecN/SMC N terminal domain APS58_1803 PF06470 SMC proteins Flexible Hinge Domain APS58_1805 PF07690 Major Facilitator Superfamily APS58_1807 PF12833 Helix-turn-helix domain APS58_1808 PF00324 Amino acid permease APS58_1809 PF06751 Ethanolamine ammonia lyase large subunit (EutB) APS58_1810 PF05985 Ethanolamine ammonia-lyase light chain (EutC) APS58_1811 PF00072 Response regulator receiver domain APS58_1811 PF00990 Diguanylate cyclase, GGDEF domain APS58_1813 PF00561 alpha/beta hydrolase fold APS58_1814 PF01169 Uncharacterized protein family UPF0016 APS58_1815 PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) APS58_1816 PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) APS58_1817 PF00106 short chain dehydrogenase APS58_1820 PF01380 SIS domain APS58_1820 PF00571 CBS domain APS58_1821 PF02254 TrkA-N domain APS58_1821 PF02080 TrkA-C domain APS58_1821 PF00999 Sodium/hydrogen exchanger family APS58_1822 PF00156 Phosphoribosyl transferase domain APS58_1823 PF00667 FAD binding domain APS58_1823 PF00258 Flavodoxin APS58_1823 PF00175 Oxidoreductase NAD-binding domain APS58_1826 PF01926 50S ribosome-binding GTPase APS58_1826 PF10396 GTP-binding protein TrmE N-terminus APS58_1826 PF12631 MnmE helical domain APS58_1828 PF02096 60Kd inner membrane protein APS58_1828 PF14849 YidC periplasmic domain APS58_1829 PF01809 Putative membrane protein insertion efficiency factor APS58_1830 PF00825 Ribonuclease P APS58_1831 PF00468 Ribosomal protein L34 APS58_1832 PF08299 Bacterial dnaA protein helix-turn-helix APS58_1832 PF11638 DnaA N-terminal domain APS58_1832 PF00308 Bacterial dnaA protein APS58_1833 PF00712 DNA polymerase III beta subunit, N-terminal domain APS58_1833 PF02767 DNA polymerase III beta subunit, central domain APS58_1833 PF02768 DNA polymerase III beta subunit, C-terminal domain APS58_1834 PF01751 Toprim domain APS58_1834 PF00204 DNA gyrase B APS58_1834 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APS58_1834 PF00986 DNA gyrase B subunit, carboxyl terminus APS58_1834 PF18053 DNA gyrase B subunit insert domain APS58_1838 PF13588 Type I restriction enzyme R protein N terminus (HSDR_N) APS58_1838 PF04851 Type III restriction enzyme, res subunit APS58_1838 PF00271 Helicase conserved C-terminal domain APS58_1838 PF08463 EcoEI R protein C-terminal APS58_1843 PF02566 OsmC-like protein APS58_1845 PF01842 ACT domain APS58_1845 PF00742 Homoserine dehydrogenase APS58_1845 PF03447 Homoserine dehydrogenase, NAD binding domain APS58_1847 PF06733 DEAD_2 APS58_1847 PF13307 Helicase C-terminal domain APS58_1850 PF07733 Bacterial DNA polymerase III alpha NTPase domain APS58_1850 PF14480 DNA polymerase III polC-type N-terminus I APS58_1850 PF11490 DNA polymerase III polC-type N-terminus II APS58_1850 PF00929 Exonuclease APS58_1850 PF17657 Bacterial DNA polymerase III alpha subunit finger domain APS58_1850 PF14579 Helix-hairpin-helix motif APS58_1850 PF02811 PHP domain APS58_1851 PF00155 Aminotransferase class I and II APS58_1851 PF00392 Bacterial regulatory proteins, gntR family APS58_1853 PF08502 LeuA allosteric (dimerisation) domain APS58_1853 PF00682 HMGL-like APS58_1854 PF00877 NlpC/P60 family APS58_1855 PF00793 DAHP synthetase I family APS58_1856 PF00563 EAL domain APS58_1856 PF00990 Diguanylate cyclase, GGDEF domain APS58_1856 PF03707 Bacterial signalling protein N terminal repeat APS58_1859 PF04381 Putative exonuclease, RdgC APS58_1860 PF07670 Nucleoside recognition APS58_1865 PF00108 Thiolase, N-terminal domain APS58_1865 PF02803 Thiolase, C-terminal domain APS58_1866 PF09278 MerR, DNA binding APS58_1866 PF00376 MerR family regulatory protein APS58_1868 PF00403 Heavy-metal-associated domain APS58_1869 PF00672 HAMP domain APS58_1869 PF02203 Tar ligand binding domain homologue APS58_1869 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain APS58_1872 PF00873 AcrB/AcrD/AcrF family APS58_1873 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion APS58_1873 PF00529 HlyD membrane-fusion protein of T1SS APS58_1875 PF00072 Response regulator receiver domain APS58_1875 PF00486 Transcriptional regulatory protein, C terminal APS58_1876 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APS58_1876 PF00512 His Kinase A (phospho-acceptor) domain APS58_1879 PF04069 Substrate binding domain of ABC-type glycine betaine transport system APS58_1880 PF00005 ABC transporter APS58_1881 PF00528 Binding-protein-dependent transport system inner membrane component APS58_1882 PF02798 Glutathione S-transferase, N-terminal domain APS58_1882 PF00043 Glutathione S-transferase, C-terminal domain APS58_1883 PF03692 Putative zinc- or iron-chelating domain APS58_1884 PF03358 NADPH-dependent FMN reductase APS58_1885 PF13932 GidA associated domain APS58_1885 PF01134 Glucose inhibited division protein A APS58_1886 PF02527 rRNA small subunit methyltransferase G APS58_1887 PF01810 LysE type translocator APS58_1888 PF13614 AAA domain APS58_1890 PF02195 ParB-like nuclease domain APS58_1890 PF17762 HTH domain found in ParB protein APS58_1893 PF07992 Pyridine nucleotide-disulphide oxidoreductase APS58_1893 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster APS58_1896 PF00106 short chain dehydrogenase APS58_1898 PF01565 FAD binding domain APS58_1898 PF04030 D-arabinono-1,4-lactone oxidase APS58_1899 PF01040 UbiA prenyltransferase family APS58_1902 PF00135 Carboxylesterase family APS58_1903 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases APS58_1904 PF01903 CbiX APS58_1905 PF02570 Precorrin-8X methylmutase APS58_1906 PF01888 CbiD APS58_1907 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases APS58_1909 PF11760 Cobalamin synthesis G N-terminal APS58_1909 PF11761 Cobalamin biosynthesis central region APS58_1909 PF01890 Cobalamin synthesis G C-terminus APS58_1912 PF01077 Nitrite and sulphite reductase 4Fe-4S domain APS58_1912 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases APS58_1916 PF01613 Flavin reductase like domain APS58_1921 PF03543 Yersinia/Haemophilus virulence surface antigen APS58_1933 PF01565 FAD binding domain APS58_1933 PF02913 FAD linked oxidases, C-terminal domain APS58_1936 PF01923 Cobalamin adenosyltransferase APS58_1937 PF03061 Thioesterase superfamily APS58_1938 PF13336 Acetyl-CoA hydrolase/transferase C-terminal domain APS58_1938 PF02550 Acetyl-CoA hydrolase/transferase N-terminal domain APS58_1940 PF00860 Permease family APS58_1942 PF00672 HAMP domain APS58_1942 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain APS58_1942 PF02203 Tar ligand binding domain homologue APS58_1944 PF00132 Bacterial transferase hexapeptide (six repeats) APS58_1949 PF12706 Beta-lactamase superfamily domain APS58_1951 PF00005 ABC transporter APS58_1952 PF00528 Binding-protein-dependent transport system inner membrane component APS58_1953 PF01494 FAD binding domain APS58_1955 PF00171 Aldehyde dehydrogenase family APS58_1956 PF09339 IclR helix-turn-helix domain APS58_1956 PF01614 Bacterial transcriptional regulator APS58_1957 PF01435 Peptidase family M48 APS58_1959 PF13193 AMP-binding enzyme C-terminal domain APS58_1959 PF00501 AMP-binding enzyme APS58_1962 PF00491 Arginase family APS58_1963 PF02423 Ornithine cyclodeaminase/mu-crystallin family APS58_1965 PF01066 CDP-alcohol phosphatidyltransferase APS58_1966 PF03421 YopJ Serine/Threonine acetyltransferase APS58_1967 PF05209 Septum formation inhibitor MinC, N-terminal domain APS58_1967 PF03775 Septum formation inhibitor MinC, C-terminal domain APS58_1968 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain APS58_1969 PF03776 Septum formation topological specificity factor MinE APS58_1970 PF01613 Flavin reductase like domain APS58_1971 PF00561 alpha/beta hydrolase fold APS58_1973 PF02525 Flavodoxin-like fold APS58_1974 PF01266 FAD dependent oxidoreductase APS58_1975 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family APS58_1975 PF03466 LysR substrate binding domain APS58_1976 PF00440 Bacterial regulatory proteins, tetR family APS58_1977 PF00582 Universal stress protein family APS58_1979 PF03466 LysR substrate binding domain APS58_1979 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family APS58_1981 PF00821 Phosphoenolpyruvate carboxykinase C-terminal P-loop domain APS58_1981 PF17297 Phosphoenolpyruvate carboxykinase N-terminal domain APS58_1982 PF06508 Queuosine biosynthesis protein QueC APS58_1984 PF04349 Periplasmic glucan biosynthesis protein, MdoG APS58_1985 PF00291 Pyridoxal-phosphate dependent enzyme APS58_1985 PF13291 ACT domain APS58_1987 PF02770 Acyl-CoA dehydrogenase, middle domain APS58_1987 PF18158 Adaptive response protein AidB N-terminal domain APS58_1987 PF00441 Acyl-CoA dehydrogenase, C-terminal domain APS58_1988 PF03466 LysR substrate binding domain APS58_1988 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family APS58_1989 PF07883 Cupin domain APS58_1990 PF01557 Fumarylacetoacetate (FAA) hydrolase family APS58_1991 PF02798 Glutathione S-transferase, N-terminal domain APS58_1991 PF14497 Glutathione S-transferase, C-terminal domain APS58_1992 PF07690 Major Facilitator Superfamily APS58_1994 PF02423 Ornithine cyclodeaminase/mu-crystallin family APS58_1998 PF03922 OmpW family APS58_2000 PF00271 Helicase conserved C-terminal domain APS58_2000 PF00176 SNF2 family N-terminal domain APS58_2002 PF01555 DNA methylase APS58_2002 PF18273 Type III R-M EcoP15I C-terminal domain APS58_2005 PF08774 VRR-NUC domain APS58_2005 PF04851 Type III restriction enzyme, res subunit APS58_2006 PF03466 LysR substrate binding domain APS58_2006 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family APS58_2007 PF00111 2Fe-2S iron-sulfur cluster binding domain APS58_2007 PF00970 Oxidoreductase FAD-binding domain APS58_2007 PF00175 Oxidoreductase NAD-binding domain APS58_2008 PF00355 Rieske [2Fe-2S] domain APS58_2008 PF00848 Ring hydroxylating alpha subunit (catalytic domain) APS58_2009 PF13577 SnoaL-like domain APS58_2010 PF00355 Rieske [2Fe-2S] domain APS58_2011 PF00672 HAMP domain APS58_2011 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain APS58_2011 PF02203 Tar ligand binding domain homologue APS58_2013 PF07690 Major Facilitator Superfamily APS58_2016 PF00158 Sigma-54 interaction domain APS58_2016 PF00072 Response regulator receiver domain APS58_2016 PF02954 Bacterial regulatory protein, Fis family APS58_2017 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APS58_2017 PF00512 His Kinase A (phospho-acceptor) domain APS58_2018 PF02310 B12 binding domain APS58_2018 PF02574 Homocysteine S-methyltransferase APS58_2018 PF00809 Pterin binding enzyme APS58_2018 PF02965 Vitamin B12 dependent methionine synthase, activation domain APS58_2018 PF02607 B12 binding domain APS58_2019 PF03466 LysR substrate binding domain APS58_2019 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family APS58_2020 PF02770 Acyl-CoA dehydrogenase, middle domain APS58_2020 PF02771 Acyl-CoA dehydrogenase, N-terminal domain APS58_2020 PF00441 Acyl-CoA dehydrogenase, C-terminal domain APS58_2022 PF02515 CoA-transferase family III APS58_2023 PF03401 Tripartite tricarboxylate transporter family receptor APS58_2024 PF00271 Helicase conserved C-terminal domain APS58_2024 PF00570 HRDC domain APS58_2024 PF16124 RecQ zinc-binding APS58_2024 PF09382 RQC domain APS58_2024 PF00270 DEAD/DEAH box helicase APS58_2032 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain APS58_2032 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase APS58_2034 PF03976 Polyphosphate kinase 2 (PPK2) APS58_2035 PF01425 Amidase APS58_2036 PF00593 TonB dependent receptor APS58_2036 PF07715 TonB-dependent Receptor Plug Domain APS58_2039 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family APS58_2042 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family APS58_2042 PF03466 LysR substrate binding domain APS58_2043 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain APS58_2043 PF13378 Enolase C-terminal domain-like APS58_2044 PF03401 Tripartite tricarboxylate transporter family receptor APS58_2047 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family APS58_2047 PF03466 LysR substrate binding domain APS58_2048 PF00497 Bacterial extracellular solute-binding proteins, family 3 APS58_2050 PF04115 Ureidoglycolate lyase APS58_2053 PF00528 Binding-protein-dependent transport system inner membrane component APS58_2055 PF00392 Bacterial regulatory proteins, gntR family APS58_2055 PF07729 FCD domain APS58_2058 PF02965 Vitamin B12 dependent methionine synthase, activation domain APS58_2058 PF02310 B12 binding domain APS58_2058 PF00809 Pterin binding enzyme APS58_2058 PF02607 B12 binding domain APS58_2058 PF02574 Homocysteine S-methyltransferase APS58_2060 PF01204 Trehalase APS58_2062 PF04185 Phosphoesterase family APS58_2062 PF05506 Domain of unknown function (DUF756) APS58_2063 PF00563 EAL domain APS58_2063 PF00990 Diguanylate cyclase, GGDEF domain APS58_2063 PF03707 Bacterial signalling protein N terminal repeat APS58_2067 PF00970 Oxidoreductase FAD-binding domain APS58_2067 PF00175 Oxidoreductase NAD-binding domain APS58_2068 PF03466 LysR substrate binding domain APS58_2068 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family APS58_2071 PF00672 HAMP domain APS58_2071 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain APS58_2071 PF02203 Tar ligand binding domain homologue APS58_2072 PF03401 Tripartite tricarboxylate transporter family receptor APS58_2073 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APS58_2073 PF00512 His Kinase A (phospho-acceptor) domain APS58_2074 PF00072 Response regulator receiver domain APS58_2074 PF00158 Sigma-54 interaction domain APS58_2074 PF02954 Bacterial regulatory protein, Fis family APS58_2075 PF01078 Magnesium chelatase, subunit ChlI APS58_2075 PF13335 Magnesium chelatase, subunit ChlI C-terminal APS58_2077 PF00543 Nitrogen regulatory protein P-II APS58_2078 PF00909 Ammonium Transporter Family APS58_2079 PF08450 SMP-30/Gluconolactonase/LRE-like region APS58_2086 PF04717 Type VI secretion system, phage-baseplate injector APS58_2087 PF01565 FAD binding domain APS58_2089 PF13183 4Fe-4S dicluster domain APS58_2089 PF02754 Cysteine-rich domain APS58_2095 PF00255 Glutathione peroxidase APS58_2097 PF07690 Major Facilitator Superfamily APS58_2098 PF00842 Alanine racemase, C-terminal domain APS58_2098 PF01168 Alanine racemase, N-terminal domain APS58_2100 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle APS58_2102 PF03401 Tripartite tricarboxylate transporter family receptor APS58_2104 PF00043 Glutathione S-transferase, C-terminal domain APS58_2104 PF02798 Glutathione S-transferase, N-terminal domain APS58_2105 PF02558 Ketopantoate reductase PanE/ApbA APS58_2105 PF08546 Ketopantoate reductase PanE/ApbA C terminal APS58_2107 PF18073 Rubredoxin metal binding domain APS58_2109 PF01063 Amino-transferase class IV APS58_2114 PF00535 Glycosyl transferase family 2 APS58_2116 PF03060 Nitronate monooxygenase APS58_2117 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family APS58_2117 PF03466 LysR substrate binding domain APS58_2118 PF06779 Uncharacterised MFS-type transporter YbfB APS58_2119 PF00512 His Kinase A (phospho-acceptor) domain APS58_2119 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APS58_2119 PF00672 HAMP domain APS58_2120 PF00486 Transcriptional regulatory protein, C terminal APS58_2120 PF00072 Response regulator receiver domain APS58_2121 PF07690 Major Facilitator Superfamily APS58_2125 PF01435 Peptidase family M48 APS58_2126 PF00939 Sodium:sulfate symporter transmembrane region APS58_2127 PF00753 Metallo-beta-lactamase superfamily APS58_2131 PF03466 LysR substrate binding domain APS58_2131 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family APS58_2132 PF07690 Major Facilitator Superfamily APS58_2133 PF00248 Aldo/keto reductase family APS58_2134 PF03372 Endonuclease/Exonuclease/phosphatase family APS58_2135 PF00156 Phosphoribosyl transferase domain APS58_2137 PF02637 GatB domain APS58_2137 PF02934 GatB/GatE catalytic domain APS58_2138 PF01425 Amidase APS58_2139 PF02686 Glu-tRNAGln amidotransferase C subunit APS58_2142 PF04093 rod shape-determining protein MreD APS58_2143 PF03717 Penicillin-binding Protein dimerisation domain APS58_2143 PF00905 Penicillin binding protein transpeptidase domain APS58_2145 PF00005 ABC transporter APS58_2146 PF00528 Binding-protein-dependent transport system inner membrane component APS58_2147 PF00497 Bacterial extracellular solute-binding proteins, family 3 APS58_2148 PF03313 Serine dehydratase alpha chain APS58_2148 PF03315 Serine dehydratase beta chain APS58_2149 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family APS58_2149 PF03466 LysR substrate binding domain APS58_2150 PF01925 Sulfite exporter TauE/SafE APS58_2151 PF00732 GMC oxidoreductase APS58_2151 PF05199 GMC oxidoreductase APS58_2152 PF02405 Permease MlaE APS58_2153 PF00005 ABC transporter APS58_2157 PF01507 Phosphoadenosine phosphosulfate reductase family APS58_2158 PF05532 CsbD-like APS58_2162 PF06123 Inner membrane protein CreD APS58_2163 PF00512 His Kinase A (phospho-acceptor) domain APS58_2163 PF00672 HAMP domain APS58_2163 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APS58_2164 PF00486 Transcriptional regulatory protein, C terminal APS58_2164 PF00072 Response regulator receiver domain APS58_2165 PF01914 MarC family integral membrane protein APS58_2167 PF01738 Dienelactone hydrolase family APS58_2168 PF07690 Major Facilitator Superfamily APS58_2169 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion APS58_2169 PF00529 HlyD membrane-fusion protein of T1SS APS58_2170 PF02321 Outer membrane efflux protein APS58_2171 PF01047 MarR family APS58_2172 PF00117 Glutamine amidotransferase class-I APS58_2172 PF00958 GMP synthase C terminal domain APS58_2172 PF02540 NAD synthase APS58_2173 PF01544 CorA-like Mg2+ transporter protein APS58_2174 PF00490 Delta-aminolevulinic acid dehydratase APS58_2178 PF02129 X-Pro dipeptidyl-peptidase (S15 family) APS58_2179 PF00768 D-alanyl-D-alanine carboxypeptidase APS58_2179 PF07943 Penicillin-binding protein 5, C-terminal domain APS58_2180 PF00164 Ribosomal protein S12/S23 APS58_2181 PF00177 Ribosomal protein S7p/S5e APS58_2182 PF03144 Elongation factor Tu domain 2 APS58_2182 PF00679 Elongation factor G C-terminus APS58_2182 PF14492 Elongation Factor G, domain II APS58_2182 PF03764 Elongation factor G, domain IV APS58_2182 PF00009 Elongation factor Tu GTP binding domain APS58_2183 PF03143 Elongation factor Tu C-terminal domain APS58_2183 PF03144 Elongation factor Tu domain 2 APS58_2183 PF00009 Elongation factor Tu GTP binding domain APS58_2184 PF00338 Ribosomal protein S10p/S20e APS58_2185 PF00297 Ribosomal protein L3 APS58_2186 PF00573 Ribosomal protein L4/L1 family APS58_2187 PF00276 Ribosomal protein L23 APS58_2188 PF03947 Ribosomal Proteins L2, C-terminal domain APS58_2188 PF00181 Ribosomal Proteins L2, RNA binding domain APS58_2189 PF00203 Ribosomal protein S19 APS58_2190 PF00237 Ribosomal protein L22p/L17e APS58_2191 PF07650 KH domain APS58_2191 PF00189 Ribosomal protein S3, C-terminal domain APS58_2192 PF00252 Ribosomal protein L16p/L10e APS58_2193 PF00831 Ribosomal L29 protein APS58_2194 PF00366 Ribosomal protein S17 APS58_2195 PF08534 Redoxin APS58_2197 PF00578 AhpC/TSA family APS58_2200 PF00381 PTS HPr component phosphorylation site APS58_2201 PF05524 PEP-utilising enzyme, N-terminal APS58_2201 PF00391 PEP-utilising enzyme, mobile domain APS58_2201 PF02896 PEP-utilising enzyme, TIM barrel domain APS58_2205 PF03814 Potassium-transporting ATPase A subunit APS58_2207 PF02669 K+-transporting ATPase, c chain APS58_2208 PF13492 GAF domain APS58_2208 PF02702 Osmosensitive K+ channel His kinase sensor domain APS58_2208 PF13493 Domain of unknown function (DUF4118) APS58_2208 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APS58_2208 PF00512 His Kinase A (phospho-acceptor) domain APS58_2209 PF00486 Transcriptional regulatory protein, C terminal APS58_2209 PF00072 Response regulator receiver domain APS58_2212 PF04055 Radical SAM superfamily APS58_2212 PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family APS58_2213 PF03099 Biotin/lipoate A/B protein ligase family APS58_2214 PF04359 Protein of unknown function (DUF493) APS58_2216 PF00119 ATP synthase A chain APS58_2217 PF00137 ATP synthase subunit C APS58_2218 PF00430 ATP synthase B/B' CF(0) APS58_2219 PF00213 ATP synthase delta (OSCP) subunit APS58_2220 PF00306 ATP synthase alpha/beta chain, C terminal domain APS58_2220 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain APS58_2220 PF02874 ATP synthase alpha/beta family, beta-barrel domain APS58_2221 PF00231 ATP synthase APS58_2222 PF02874 ATP synthase alpha/beta family, beta-barrel domain APS58_2222 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain APS58_2223 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain APS58_2225 PF01068 ATP dependent DNA ligase domain APS58_2225 PF04675 DNA ligase N terminus APS58_2225 PF04679 ATP dependent DNA ligase C terminal region APS58_2226 PF08494 DEAD/H associated APS58_2226 PF00271 Helicase conserved C-terminal domain APS58_2226 PF00270 DEAD/DEAH box helicase APS58_2236 PF13442 Cytochrome C oxidase, cbb3-type, subunit III APS58_2237 PF01344 Kelch motif APS58_2238 PF02321 Outer membrane efflux protein APS58_2239 PF00873 AcrB/AcrD/AcrF family APS58_2240 PF00529 HlyD membrane-fusion protein of T1SS APS58_2240 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion APS58_2241 PF00440 Bacterial regulatory proteins, tetR family APS58_2241 PF08361 MAATS-type transcriptional repressor, C-terminal region APS58_2254 PF00589 Phage integrase family APS58_2257 PF13230 Glutamine amidotransferases class-II APS58_2258 PF07690 Major Facilitator Superfamily APS58_2259 PF01361 Tautomerase enzyme APS58_2261 PF00672 HAMP domain APS58_2261 PF02203 Tar ligand binding domain homologue APS58_2261 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain APS58_2262 PF01274 Malate synthase APS58_2263 PF03466 LysR substrate binding domain APS58_2263 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family APS58_2265 PF01011 PQQ enzyme repeat APS58_2268 PF03485 Arginyl tRNA synthetase N terminal domain APS58_2268 PF05746 DALR anticodon binding domain APS58_2268 PF00750 tRNA synthetases class I (R) APS58_2270 PF00085 Thioredoxin APS58_2270 PF01323 DSBA-like thioredoxin domain APS58_2272 PF00005 ABC transporter APS58_2273 PF04963 Sigma-54 factor, core binding domain APS58_2273 PF04552 Sigma-54, DNA binding domain APS58_2273 PF00309 Sigma-54 factor, Activator interacting domain (AID) APS58_2274 PF03073 TspO/MBR family APS58_2275 PF02743 Cache domain APS58_2275 PF00672 HAMP domain APS58_2275 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain APS58_2276 PF02926 THUMP domain APS58_2276 PF01170 Putative RNA methylase family UPF0020 APS58_2278 PF06472 ABC transporter transmembrane region 2 APS58_2278 PF00005 ABC transporter APS58_2280 PF02810 SEC-C motif APS58_2280 PF07517 SecA DEAD-like domain APS58_2280 PF01043 SecA preprotein cross-linking domain APS58_2280 PF07516 SecA Wing and Scaffold domain APS58_2281 PF01740 STAS domain APS58_2281 PF00916 Sulfate permease family APS58_2282 PF02203 Tar ligand binding domain homologue APS58_2282 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain APS58_2282 PF00672 HAMP domain APS58_2283 PF02464 Competence-damaged protein APS58_2284 PF04608 Phosphatidylglycerophosphatase A APS58_2286 PF00586 AIR synthase related protein, N-terminal domain APS58_2286 PF02769 AIR synthase related protein, C-terminal domain APS58_2288 PF04107 Glutamate-cysteine ligase family 2(GCS2) APS58_2291 PF04379 ApaG domain APS58_2292 PF00834 Ribulose-phosphate 3 epimerase family APS58_2294 PF13419 Haloacid dehalogenase-like hydrolase APS58_2296 PF04715 Anthranilate synthase component I, N terminal region APS58_2296 PF00425 chorismate binding enzyme APS58_2298 PF12833 Helix-turn-helix domain APS58_2302 PF01313 Bacterial export proteins, family 3 APS58_2303 PF00813 FliP family APS58_2306 PF00771 FHIPEP family APS58_2307 PF01312 FlhB HrpN YscU SpaS Family APS58_2312 PF03211 Pectate lyase APS58_2318 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain APS58_2318 PF02874 ATP synthase alpha/beta family, beta-barrel domain APS58_2318 PF18269 T3SS EscN ATPase C-terminal domain APS58_2321 PF01514 Secretory protein of YscJ/FliF family APS58_2332 PF10119 Predicted methyltransferase regulatory domain APS58_2332 PF13847 Methyltransferase domain APS58_2333 PF01464 Transglycosylase SLT domain APS58_2333 PF01551 Peptidase family M23 APS58_2333 PF10145 Phage-related minor tail protein APS58_2339 PF00117 Glutamine amidotransferase class-I APS58_2340 PF01810 LysE type translocator APS58_2341 PF02885 Glycosyl transferase family, helical bundle domain APS58_2341 PF00591 Glycosyl transferase family, a/b domain APS58_2343 PF00218 Indole-3-glycerol phosphate synthase APS58_2344 PF03167 Uracil DNA glycosylase superfamily APS58_2348 PF02547 Queuosine biosynthesis protein APS58_2352 PF01966 HD domain APS58_2352 PF11871 Domain of unknown function (DUF3391) APS58_2353 PF00271 Helicase conserved C-terminal domain APS58_2353 PF00270 DEAD/DEAH box helicase APS58_2353 PF17191 RecG wedge domain APS58_2354 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family APS58_2354 PF03466 LysR substrate binding domain APS58_2355 PF00210 Ferritin-like domain APS58_2357 PF01040 UbiA prenyltransferase family APS58_2360 PF00535 Glycosyl transferase family 2 APS58_2362 PF14748 Pyrroline-5-carboxylate reductase dimerisation APS58_2362 PF03807 NADP oxidoreductase coenzyme F420-dependent APS58_2363 PF02782 FGGY family of carbohydrate kinases, C-terminal domain APS58_2363 PF00370 FGGY family of carbohydrate kinases, N-terminal domain APS58_2364 PF00455 DeoR C terminal sensor domain APS58_2364 PF08220 DeoR-like helix-turn-helix domain APS58_2365 PF00005 ABC transporter APS58_2365 PF17912 MalK OB fold domain APS58_2366 PF00005 ABC transporter APS58_2366 PF08402 TOBE domain APS58_2367 PF00528 Binding-protein-dependent transport system inner membrane component APS58_2368 PF00528 Binding-protein-dependent transport system inner membrane component APS58_2371 PF01266 FAD dependent oxidoreductase APS58_2371 PF16901 C-terminal domain of alpha-glycerophosphate oxidase APS58_2372 PF00238 Ribosomal protein L14p/L23e APS58_2373 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 APS58_2374 PF00281 Ribosomal protein L5 APS58_2374 PF00673 ribosomal L5P family C-terminus APS58_2375 PF00253 Ribosomal protein S14p/S29e APS58_2376 PF00410 Ribosomal protein S8 APS58_2377 PF00347 Ribosomal protein L6 APS58_2378 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast APS58_2379 PF03719 Ribosomal protein S5, C-terminal domain APS58_2379 PF00333 Ribosomal protein S5, N-terminal domain APS58_2380 PF00327 Ribosomal protein L30p/L7e APS58_2381 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A APS58_2382 PF00344 SecY translocase APS58_2383 PF00444 Ribosomal protein L36 APS58_2384 PF00416 Ribosomal protein S13/S18 APS58_2385 PF00411 Ribosomal protein S11 APS58_2386 PF00163 Ribosomal protein S4/S9 N-terminal domain APS58_2386 PF01479 S4 domain APS58_2387 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain APS58_2387 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain APS58_2387 PF01000 RNA polymerase Rpb3/RpoA insert domain APS58_2388 PF01196 Ribosomal protein L17 APS58_2390 PF00012 Hsp70 protein APS58_2391 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases APS58_2392 PF02021 Uncharacterised protein family UPF0102 APS58_2393 PF13580 SIS domain APS58_2394 PF04972 BON domain APS58_2395 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase APS58_2395 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase APS58_2396 PF00437 Type II/IV secretion system protein APS58_2397 PF13545 Crp-like helix-turn-helix domain APS58_2397 PF00027 Cyclic nucleotide-binding domain APS58_2398 PF00437 Type II/IV secretion system protein APS58_2399 PF01168 Alanine racemase, N-terminal domain APS58_2400 PF01212 Beta-eliminating lyase APS58_2402 PF04286 Protein of unknown function (DUF445) APS58_2406 PF01565 FAD binding domain APS58_2406 PF02913 FAD linked oxidases, C-terminal domain APS58_2408 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family APS58_2408 PF03466 LysR substrate binding domain APS58_2409 PF00551 Formyl transferase APS58_2410 PF00563 EAL domain APS58_2410 PF00990 Diguanylate cyclase, GGDEF domain APS58_2410 PF03707 Bacterial signalling protein N terminal repeat APS58_2412 PF02308 MgtC family APS58_2414 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APS58_2414 PF07730 Histidine kinase APS58_2414 PF00672 HAMP domain APS58_2414 PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term APS58_2415 PF00072 Response regulator receiver domain APS58_2415 PF00196 Bacterial regulatory proteins, luxR family APS58_2418 PF07715 TonB-dependent Receptor Plug Domain APS58_2418 PF00593 TonB dependent receptor APS58_2420 PF07690 Major Facilitator Superfamily APS58_2421 PF07690 Major Facilitator Superfamily APS58_2422 PF14710 Respiratory nitrate reductase alpha N-terminal APS58_2422 PF01568 Molydopterin dinucleotide binding domain APS58_2422 PF00384 Molybdopterin oxidoreductase APS58_2423 PF13247 4Fe-4S dicluster domain APS58_2423 PF14711 Respiratory nitrate reductase beta C-terminal APS58_2424 PF02613 Nitrate reductase delta subunit APS58_2425 PF02665 Nitrate reductase gamma subunit APS58_2426 PF00639 PPIC-type PPIASE domain APS58_2426 PF09312 SurA N-terminal domain APS58_2427 PF00484 Carbonic anhydrase APS58_2428 PF02867 Ribonucleotide reductase, barrel domain APS58_2428 PF00317 Ribonucleotide reductase, all-alpha domain APS58_2428 PF03477 ATP cone domain APS58_2431 PF01814 Hemerythrin HHE cation binding domain APS58_2434 PF07690 Major Facilitator Superfamily APS58_2440 PF03401 Tripartite tricarboxylate transporter family receptor APS58_2442 PF13185 GAF domain APS58_2442 PF00563 EAL domain APS58_2442 PF00990 Diguanylate cyclase, GGDEF domain APS58_2443 PF03006 Haemolysin-III related APS58_2447 PF04717 Type VI secretion system, phage-baseplate injector APS58_2454 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component APS58_2455 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component APS58_2457 PF00920 Dehydratase family APS58_2458 PF03480 Bacterial extracellular solute-binding protein, family 7 APS58_2459 PF03466 LysR substrate binding domain APS58_2459 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family APS58_2460 PF03466 LysR substrate binding domain APS58_2460 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family APS58_2461 PF02678 Pirin APS58_2461 PF17954 Quercetinase C-terminal cupin domain APS58_2462 PF00857 Isochorismatase family APS58_2463 PF07969 Amidohydrolase family APS58_2465 PF07690 Major Facilitator Superfamily APS58_2470 PF01568 Molydopterin dinucleotide binding domain APS58_2470 PF00384 Molybdopterin oxidoreductase APS58_2470 PF04879 Molybdopterin oxidoreductase Fe4S4 domain APS58_2472 PF07687 Peptidase dimerisation domain APS58_2472 PF01546 Peptidase family M20/M25/M40 APS58_2473 PF01546 Peptidase family M20/M25/M40 APS58_2473 PF07687 Peptidase dimerisation domain APS58_2475 PF00672 HAMP domain APS58_2475 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain APS58_2475 PF02203 Tar ligand binding domain homologue APS58_2478 PF13302 Acetyltransferase (GNAT) domain APS58_2478 PF00958 GMP synthase C terminal domain APS58_2478 PF00117 Glutamine amidotransferase class-I APS58_2478 PF03352 Methyladenine glycosylase APS58_2478 PF13673 Acetyltransferase (GNAT) domain APS58_2482 PF03401 Tripartite tricarboxylate transporter family receptor APS58_2483 PF03401 Tripartite tricarboxylate transporter family receptor APS58_2484 PF00501 AMP-binding enzyme APS58_2484 PF14535 AMP-binding enzyme C-terminal domain APS58_2485 PF00005 ABC transporter APS58_2487 PF11862 Domain of unknown function (DUF3382) APS58_2487 PF02653 Branched-chain amino acid transport system / permease component APS58_2488 PF02653 Branched-chain amino acid transport system / permease component APS58_2489 PF12399 Branched-chain amino acid ATP-binding cassette transporter APS58_2489 PF00005 ABC transporter APS58_2490 PF00501 AMP-binding enzyme APS58_2491 PF13401 AAA domain APS58_2491 PF01471 Putative peptidoglycan binding domain APS58_2493 PF05987 Bacterial protein of unknown function (DUF898) APS58_2494 PF00849 RNA pseudouridylate synthase APS58_2494 PF01479 S4 domain APS58_2496 PF01494 FAD binding domain APS58_2500 PF02798 Glutathione S-transferase, N-terminal domain APS58_2501 PF01678 Diaminopimelate epimerase APS58_2503 PF00589 Phage integrase family APS58_2503 PF02899 Phage integrase, N-terminal SAM-like domain APS58_2505 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain APS58_2505 PF12729 Four helix bundle sensory module for signal transduction APS58_2505 PF00672 HAMP domain APS58_2507 PF10672 S-adenosylmethionine-dependent methyltransferase APS58_2507 PF17785 PUA-like domain APS58_2508 PF00990 Diguanylate cyclase, GGDEF domain APS58_2508 PF00563 EAL domain APS58_2508 PF08448 PAS fold APS58_2508 PF13426 PAS domain APS58_2508 PF05231 MASE1 APS58_2508 PF08447 PAS fold APS58_2509 PF07683 Cobalamin synthesis protein cobW C-terminal domain APS58_2509 PF02492 CobW/HypB/UreG, nucleotide-binding domain APS58_2510 PF01258 Prokaryotic dksA/traR C4-type zinc finger APS58_2512 PF00227 Proteasome subunit APS58_2513 PF07724 AAA domain (Cdc48 subfamily) APS58_2513 PF00004 ATPase family associated with various cellular activities (AAA) APS58_2514 PF02381 MraZ protein, putative antitoxin-like APS58_2515 PF01795 MraW methylase family APS58_2516 PF04999 Cell division protein FtsL APS58_2517 PF00905 Penicillin binding protein transpeptidase domain APS58_2517 PF03717 Penicillin-binding Protein dimerisation domain APS58_2518 PF02875 Mur ligase family, glutamate ligase domain APS58_2518 PF08245 Mur ligase middle domain APS58_2519 PF01225 Mur ligase family, catalytic domain APS58_2519 PF08245 Mur ligase middle domain APS58_2519 PF02875 Mur ligase family, glutamate ligase domain APS58_2520 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 APS58_2520 PF00953 Glycosyl transferase family 4 APS58_2521 PF08245 Mur ligase middle domain APS58_2521 PF02875 Mur ligase family, glutamate ligase domain APS58_2522 PF01098 Cell cycle protein APS58_2523 PF04101 Glycosyltransferase family 28 C-terminal domain APS58_2523 PF03033 Glycosyltransferase family 28 N-terminal domain APS58_2524 PF08245 Mur ligase middle domain APS58_2524 PF01225 Mur ligase family, catalytic domain APS58_2524 PF02875 Mur ligase family, glutamate ligase domain APS58_2525 PF01820 D-ala D-ala ligase N-terminus APS58_2525 PF07478 D-ala D-ala ligase C-terminus APS58_2526 PF03799 Cell division protein FtsQ APS58_2526 PF08478 POTRA domain, FtsQ-type APS58_2527 PF02491 SHS2 domain inserted in FTSA APS58_2528 PF12327 FtsZ family, C-terminal domain APS58_2528 PF00091 Tubulin/FtsZ family, GTPase domain APS58_2529 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase APS58_2531 PF01964 Radical SAM ThiC family APS58_2531 PF13667 ThiC-associated domain APS58_2532 PF16591 Helical bimodular sensor domain APS58_2532 PF00672 HAMP domain APS58_2532 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain APS58_2533 PF00672 HAMP domain APS58_2533 PF02203 Tar ligand binding domain homologue APS58_2533 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain APS58_2535 PF02075 Crossover junction endodeoxyribonuclease RuvC APS58_2538 PF03401 Tripartite tricarboxylate transporter family receptor APS58_2540 PF03328 HpcH/HpaI aldolase/citrate lyase family APS58_2541 PF09339 IclR helix-turn-helix domain APS58_2541 PF01614 Bacterial transcriptional regulator APS58_2542 PF00912 Transglycosylase APS58_2543 PF08501 Shikimate dehydrogenase substrate binding domain APS58_2543 PF18317 Shikimate 5'-dehydrogenase C-terminal domain APS58_2543 PF01488 Shikimate / quinate 5-dehydrogenase APS58_2545 PF00773 RNB domain APS58_2547 PF05728 Uncharacterised protein family (UPF0227) APS58_2548 PF01098 Cell cycle protein APS58_2549 PF01425 Amidase APS58_2550 PF01523 Putative modulator of DNA gyrase APS58_2552 PF00793 DAHP synthetase I family APS58_2554 PF01225 Mur ligase family, catalytic domain APS58_2554 PF02875 Mur ligase family, glutamate ligase domain APS58_2554 PF08245 Mur ligase middle domain APS58_2556 PF08534 Redoxin APS58_2557 PF00364 Biotin-requiring enzyme APS58_2558 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain APS58_2558 PF02785 Biotin carboxylase C-terminal domain APS58_2558 PF00289 Biotin carboxylase, N-terminal domain APS58_2561 PF00294 pfkB family carbohydrate kinase APS58_2563 PF00268 Ribonucleotide reductase, small chain APS58_2564 PF03477 ATP cone domain APS58_2564 PF02867 Ribonucleotide reductase, barrel domain APS58_2564 PF00317 Ribonucleotide reductase, all-alpha domain APS58_2565 PF01510 N-acetylmuramoyl-L-alanine amidase APS58_2566 PF02954 Bacterial regulatory protein, Fis family APS58_2566 PF00158 Sigma-54 interaction domain APS58_2566 PF00072 Response regulator receiver domain APS58_2567 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APS58_2567 PF00512 His Kinase A (phospho-acceptor) domain APS58_2570 PF00448 SRP54-type protein, GTPase domain APS58_2570 PF02881 SRP54-type protein, helical bundle domain APS58_2570 PF02978 Signal peptide binding domain APS58_2571 PF00535 Glycosyl transferase family 2 APS58_2572 PF00072 Response regulator receiver domain APS58_2572 PF00158 Sigma-54 interaction domain APS58_2574 PF00512 His Kinase A (phospho-acceptor) domain APS58_2574 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APS58_2575 PF00919 Uncharacterized protein family UPF0004 APS58_2575 PF01938 TRAM domain APS58_2575 PF04055 Radical SAM superfamily APS58_2579 PF02771 Acyl-CoA dehydrogenase, N-terminal domain APS58_2579 PF08028 Acyl-CoA dehydrogenase, C-terminal domain APS58_2579 PF02770 Acyl-CoA dehydrogenase, middle domain APS58_2580 PF00296 Luciferase-like monooxygenase APS58_2581 PF03358 NADPH-dependent FMN reductase APS58_2582 PF00158 Sigma-54 interaction domain APS58_2583 PF00378 Enoyl-CoA hydratase/isomerase APS58_2585 PF10411 Disulfide bond isomerase protein N-terminus APS58_2585 PF13098 Thioredoxin-like domain APS58_2586 PF01494 FAD binding domain APS58_2587 PF03476 MOSC N-terminal beta barrel domain APS58_2587 PF03473 MOSC domain APS58_2587 PF00111 2Fe-2S iron-sulfur cluster binding domain APS58_2588 PF06071 Protein of unknown function (DUF933) APS58_2588 PF01926 50S ribosome-binding GTPase APS58_2591 PF00571 CBS domain APS58_2591 PF00005 ABC transporter APS58_2592 PF00892 EamA-like transporter family APS58_2593 PF09335 SNARE associated Golgi protein APS58_2594 PF00990 Diguanylate cyclase, GGDEF domain APS58_2594 PF08448 PAS fold APS58_2595 PF01207 Dihydrouridine synthase (Dus) APS58_2596 PF02954 Bacterial regulatory protein, Fis family APS58_2597 PF02142 MGS-like domain APS58_2597 PF01808 AICARFT/IMPCHase bienzyme APS58_2600 PF00202 Aminotransferase class-III APS58_2601 PF02581 Thiamine monophosphate synthase APS58_2601 PF03070 TENA/THI-4/PQQC family APS58_2601 PF08543 Phosphomethylpyrimidine kinase APS58_2603 PF00072 Response regulator receiver domain APS58_2604 PF00072 Response regulator receiver domain APS58_2605 PF01584 CheW-like domain APS58_2606 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain APS58_2606 PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term APS58_2607 PF01627 Hpt domain APS58_2607 PF01584 CheW-like domain APS58_2607 PF02895 Signal transducing histidine kinase, homodimeric domain APS58_2607 PF09078 CheY binding APS58_2607 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APS58_2608 PF03441 FAD binding domain of DNA photolyase APS58_2608 PF00875 DNA photolyase APS58_2609 PF02622 Uncharacterized ACR, COG1678 APS58_2610 PF03652 Holliday junction resolvase APS58_2611 PF00156 Phosphoribosyl transferase domain APS58_2612 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain APS58_2612 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain APS58_2613 PF01979 Amidohydrolase family APS58_2614 PF01553 Acyltransferase APS58_2616 PF00005 ABC transporter APS58_2616 PF08402 TOBE domain APS58_2617 PF00528 Binding-protein-dependent transport system inner membrane component APS58_2618 PF03960 ArsC family APS58_2619 PF00437 Type II/IV secretion system protein APS58_2620 PF00263 Bacterial type II and III secretion system protein APS58_2620 PF03958 Bacterial type II/III secretion system short domain APS58_2625 PF11612 Type II secretion system (T2SS), protein J APS58_2625 PF07963 Prokaryotic N-terminal methylation motif APS58_2626 PF07963 Prokaryotic N-terminal methylation motif APS58_2626 PF02501 Type II secretion system (T2SS), protein I APS58_2627 PF12019 Type II transport protein GspH APS58_2628 PF07963 Prokaryotic N-terminal methylation motif APS58_2628 PF08334 Type II secretion system (T2SS), protein G APS58_2631 PF02654 Cobalamin-5-phosphate synthase APS58_2632 PF00291 Pyridoxal-phosphate dependent enzyme APS58_2632 PF00585 C-terminal regulatory domain of Threonine dehydratase APS58_2633 PF02566 OsmC-like protein APS58_2634 PF03232 Ubiquinone biosynthesis protein COQ7 APS58_2635 PF13609 Gram-negative porin APS58_2636 PF00267 Gram-negative porin APS58_2637 PF00528 Binding-protein-dependent transport system inner membrane component APS58_2638 PF01546 Peptidase family M20/M25/M40 APS58_2638 PF07687 Peptidase dimerisation domain APS58_2639 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle APS58_2640 PF12911 N-terminal TM domain of oligopeptide transport permease C APS58_2640 PF00528 Binding-protein-dependent transport system inner membrane component APS58_2641 PF00005 ABC transporter APS58_2641 PF08352 Oligopeptide/dipeptide transporter, C-terminal region APS58_2642 PF00005 ABC transporter APS58_2642 PF08352 Oligopeptide/dipeptide transporter, C-terminal region APS58_2643 PF02203 Tar ligand binding domain homologue APS58_2643 PF00672 HAMP domain APS58_2643 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain APS58_2644 PF02685 Glucokinase APS58_2644 PF01418 Helix-turn-helix domain, rpiR family APS58_2644 PF01380 SIS domain APS58_2645 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain APS58_2645 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain APS58_2646 PF00923 Transaldolase/Fructose-6-phosphate aldolase APS58_2647 PF00342 Phosphoglucose isomerase APS58_2648 PF00118 TCP-1/cpn60 chaperonin family APS58_2649 PF00166 Chaperonin 10 Kd subunit APS58_2652 PF00483 Nucleotidyl transferase APS58_2652 PF01050 Mannose-6-phosphate isomerase APS58_2653 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain APS58_2653 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain APS58_2653 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain APS58_2654 PF02894 Oxidoreductase family, C-terminal alpha/beta domain APS58_2654 PF01408 Oxidoreductase family, NAD-binding Rossmann fold APS58_2655 PF00132 Bacterial transferase hexapeptide (six repeats) APS58_2656 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family APS58_2657 PF02350 UDP-N-acetylglucosamine 2-epimerase APS58_2658 PF01061 ABC-2 type transporter APS58_2659 PF14524 Wzt C-terminal domain APS58_2659 PF00005 ABC transporter APS58_2660 PF13649 Methyltransferase domain APS58_2661 PF13439 Glycosyltransferase Family 4 APS58_2661 PF00534 Glycosyl transferases group 1 APS58_2663 PF00733 Asparagine synthase APS58_2663 PF13537 Glutamine amidotransferase domain APS58_2665 PF13537 Glutamine amidotransferase domain APS58_2665 PF00733 Asparagine synthase APS58_2669 PF00535 Glycosyl transferase family 2 APS58_2671 PF08362 YcdC-like protein, C-terminal region APS58_2671 PF00440 Bacterial regulatory proteins, tetR family APS58_2672 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster APS58_2672 PF07992 Pyridine nucleotide-disulphide oxidoreductase APS58_2673 PF01180 Dihydroorotate dehydrogenase APS58_2674 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin APS58_2675 PF01979 Amidohydrolase family APS58_2676 PF01546 Peptidase family M20/M25/M40 APS58_2676 PF07687 Peptidase dimerisation domain APS58_2680 PF01467 Cytidylyltransferase-like APS58_2681 PF00795 Carbon-nitrogen hydrolase APS58_2681 PF02540 NAD synthase APS58_2682 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain APS58_2682 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family APS58_2685 PF00438 S-adenosylmethionine synthetase, N-terminal domain APS58_2685 PF02772 S-adenosylmethionine synthetase, central domain APS58_2685 PF02773 S-adenosylmethionine synthetase, C-terminal domain APS58_2687 PF03279 Bacterial lipid A biosynthesis acyltransferase APS58_2689 PF01926 50S ribosome-binding GTPase APS58_2690 PF00034 Cytochrome c APS58_2691 PF05140 ResB-like family APS58_2692 PF01578 Cytochrome C assembly protein APS58_2693 PF00174 Oxidoreductase molybdopterin binding domain APS58_2694 PF01794 Ferric reductase like transmembrane component APS58_2698 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain APS58_2698 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain APS58_2700 PF01491 Frataxin-like domain APS58_2701 PF00905 Penicillin binding protein transpeptidase domain APS58_2701 PF17092 Penicillin-binding protein OB-like domain APS58_2701 PF00912 Transglycosylase APS58_2706 PF03958 Bacterial type II/III secretion system short domain APS58_2706 PF00263 Bacterial type II and III secretion system protein APS58_2706 PF07660 Secretin and TonB N terminus short domain APS58_2706 PF11741 AMIN domain APS58_2708 PF01202 Shikimate kinase APS58_2709 PF01761 3-dehydroquinate synthase APS58_2710 PF13286 Phosphohydrolase-associated domain APS58_2710 PF01966 HD domain APS58_2714 PF04898 Glutamate synthase central domain APS58_2714 PF00310 Glutamine amidotransferases class-II APS58_2714 PF01645 Conserved region in glutamate synthase APS58_2714 PF01493 GXGXG motif APS58_2715 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster APS58_2715 PF07992 Pyridine nucleotide-disulphide oxidoreductase APS58_2716 PF00497 Bacterial extracellular solute-binding proteins, family 3 APS58_2717 PF00528 Binding-protein-dependent transport system inner membrane component APS58_2718 PF00005 ABC transporter APS58_2719 PF00005 ABC transporter APS58_2720 PF02405 Permease MlaE APS58_2721 PF02470 MlaD protein APS58_2722 PF04333 MlaA lipoprotein APS58_2726 PF00005 ABC transporter APS58_2727 PF01061 ABC-2 type transporter APS58_2728 PF01722 BolA-like protein APS58_2730 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) APS58_2731 PF01634 ATP phosphoribosyltransferase APS58_2740 PF00155 Aminotransferase class I and II APS58_2741 PF00475 Imidazoleglycerol-phosphate dehydratase APS58_2742 PF00117 Glutamine amidotransferase class-I APS58_2743 PF00977 Histidine biosynthesis protein APS58_2747 PF00534 Glycosyl transferases group 1 APS58_2747 PF17101 Stealth protein CR1, conserved region 1 APS58_2747 PF17103 Stealth protein CR4, conserved region 4 APS58_2747 PF11380 Stealth protein CR2, conserved region 2 APS58_2747 PF17102 Stealth protein CR3, conserved region 3 APS58_2753 PF16363 GDP-mannose 4,6 dehydratase APS58_2754 PF00375 Sodium:dicarboxylate symporter family APS58_2756 PF00977 Histidine biosynthesis protein APS58_2757 PF01502 Phosphoribosyl-AMP cyclohydrolase APS58_2758 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase APS58_2761 PF01230 HIT domain APS58_2762 PF02416 mttA/Hcf106 family APS58_2763 PF02416 mttA/Hcf106 family APS58_2764 PF00902 Sec-independent protein translocase protein (TatC) APS58_2768 PF17820 PDZ domain APS58_2768 PF13180 PDZ domain APS58_2769 PF08946 Osmosensory transporter coiled coil APS58_2769 PF00083 Sugar (and other) transporter APS58_2770 PF01784 NIF3 (NGG1p interacting factor 3) APS58_2772 PF13519 von Willebrand factor type A domain APS58_2773 PF01882 Protein of unknown function DUF58 APS58_2774 PF17863 AAA lid domain APS58_2774 PF07726 ATPase family associated with various cellular activities (AAA) APS58_2775 PF00595 PDZ domain APS58_2776 PF01026 TatD related DNase APS58_2780 PF07331 Tripartite tricarboxylate transporter TctB family APS58_2781 PF01970 Tripartite tricarboxylate transporter TctA family APS58_2787 PF13192 Thioredoxin domain APS58_2787 PF07992 Pyridine nucleotide-disulphide oxidoreductase APS58_2789 PF00106 short chain dehydrogenase APS58_2790 PF00672 HAMP domain APS58_2790 PF02743 Cache domain APS58_2790 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain APS58_2791 PF01774 UreD urease accessory protein APS58_2795 PF01176 Translation initiation factor 1A / IF-1 APS58_2800 PF00528 Binding-protein-dependent transport system inner membrane component APS58_2801 PF00005 ABC transporter APS58_2804 PF01515 Phosphate acetyl/butaryl transferase APS58_2804 PF03949 Malic enzyme, NAD binding domain APS58_2804 PF00390 Malic enzyme, N-terminal domain APS58_2805 PF00860 Permease family APS58_2807 PF01177 Asp/Glu/Hydantoin racemase APS58_2808 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin APS58_2809 PF07729 FCD domain APS58_2809 PF00392 Bacterial regulatory proteins, gntR family APS58_2810 PF02203 Tar ligand binding domain homologue APS58_2810 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain APS58_2810 PF00672 HAMP domain APS58_2811 PF00375 Sodium:dicarboxylate symporter family APS58_2817 PF01546 Peptidase family M20/M25/M40 APS58_2817 PF07687 Peptidase dimerisation domain APS58_2818 PF07687 Peptidase dimerisation domain APS58_2818 PF01546 Peptidase family M20/M25/M40 APS58_2820 PF07729 FCD domain APS58_2820 PF00392 Bacterial regulatory proteins, gntR family APS58_2821 PF05161 MOFRL family APS58_2821 PF13660 Domain of unknown function (DUF4147) APS58_2823 PF00576 HIUase/Transthyretin family APS58_2827 PF00990 Diguanylate cyclase, GGDEF domain APS58_2827 PF03707 Bacterial signalling protein N terminal repeat APS58_2827 PF00563 EAL domain APS58_2828 PF00196 Bacterial regulatory proteins, luxR family APS58_2828 PF00072 Response regulator receiver domain APS58_2829 PF07730 Histidine kinase APS58_2829 PF17200 Single Cache domain 2 APS58_2830 PF01042 Endoribonuclease L-PSP APS58_2832 PF13609 Gram-negative porin APS58_2834 PF00990 Diguanylate cyclase, GGDEF domain APS58_2834 PF08448 PAS fold APS58_2834 PF08447 PAS fold APS58_2834 PF00563 EAL domain APS58_2834 PF05231 MASE1 APS58_2834 PF13426 PAS domain APS58_2837 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase APS58_2837 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain APS58_2838 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase APS58_2838 PF01799 [2Fe-2S] binding domain APS58_2838 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain APS58_2838 PF00111 2Fe-2S iron-sulfur cluster binding domain APS58_2842 PF00005 ABC transporter APS58_2845 PF02608 ABC transporter substrate-binding protein PnrA-like APS58_2847 PF00355 Rieske [2Fe-2S] domain APS58_2849 PF00962 Adenosine/AMP deaminase APS58_2851 PF01804 Penicillin amidase APS58_2852 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain APS58_2852 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain APS58_2855 PF00692 dUTPase APS58_2858 PF04228 Putative neutral zinc metallopeptidase APS58_2859 PF00270 DEAD/DEAH box helicase APS58_2859 PF00271 Helicase conserved C-terminal domain APS58_2860 PF00149 Calcineurin-like phosphoesterase APS58_2861 PF00816 H-NS histone family APS58_2862 PF00330 Aconitase family (aconitate hydratase) APS58_2862 PF00694 Aconitase C-terminal domain APS58_2863 PF00990 Diguanylate cyclase, GGDEF domain APS58_2863 PF03707 Bacterial signalling protein N terminal repeat APS58_2863 PF00563 EAL domain APS58_2866 PF03707 Bacterial signalling protein N terminal repeat APS58_2866 PF00990 Diguanylate cyclase, GGDEF domain APS58_2866 PF00563 EAL domain APS58_2867 PF01494 FAD binding domain APS58_2868 PF03301 Tryptophan 2,3-dioxygenase APS58_2869 PF00266 Aminotransferase class-V APS58_2870 PF04199 Putative cyclase APS58_2871 PF01037 Lrp/AsnC ligand binding domain APS58_2872 PF03692 Putative zinc- or iron-chelating domain APS58_2874 PF07664 Ferrous iron transport protein B C terminus APS58_2874 PF02421 Ferrous iron transport protein B APS58_2874 PF07670 Nucleoside recognition APS58_2877 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain APS58_2877 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain APS58_2878 PF00202 Aminotransferase class-III APS58_2880 PF06039 Malate:quinone oxidoreductase (Mqo) APS58_2881 PF01649 Ribosomal protein S20 APS58_2882 PF03023 Lipid II flippase MurJ APS58_2883 PF13369 Transglutaminase-like superfamily APS58_2884 PF14819 Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term APS58_2884 PF14489 QueF-like protein APS58_2886 PF03883 Peroxide stress protein YaaA APS58_2887 PF12111 Polyribonucleotide phosphorylase C terminal APS58_2887 PF10150 Ribonuclease E/G family APS58_2887 PF00575 S1 RNA binding domain APS58_2889 PF01479 S4 domain APS58_2889 PF00849 RNA pseudouridylate synthase APS58_2892 PF01343 Peptidase family S49 APS58_2892 PF06965 Na+/H+ antiporter 1 APS58_2893 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases APS58_2894 PF02545 Maf-like protein APS58_2895 PF02620 Large ribosomal RNA subunit accumulation protein YceD APS58_2896 PF01783 Ribosomal L32p protein family APS58_2897 PF02504 Fatty acid synthesis protein APS58_2898 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal APS58_2898 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III APS58_2899 PF00698 Acyl transferase domain APS58_2901 PF00550 Phosphopantetheine attachment site APS58_2902 PF00109 Beta-ketoacyl synthase, N-terminal domain APS58_2902 PF02801 Beta-ketoacyl synthase, C-terminal domain APS58_2904 PF04542 Sigma-70 region 2 APS58_2904 PF08281 Sigma-70, region 4 APS58_2907 PF13180 PDZ domain APS58_2908 PF06421 GTP-binding protein LepA C-terminus APS58_2908 PF00009 Elongation factor Tu GTP binding domain APS58_2908 PF00679 Elongation factor G C-terminus APS58_2909 PF10502 Signal peptidase, peptidase S26 APS58_2911 PF14622 Ribonuclease-III-like APS58_2911 PF00035 Double-stranded RNA binding motif APS58_2912 PF01926 50S ribosome-binding GTPase APS58_2912 PF07650 KH domain APS58_2913 PF11967 Recombination protein O N terminal APS58_2913 PF02565 Recombination protein O C terminal APS58_2914 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ APS58_2915 PF00933 Glycosyl hydrolase family 3 N terminal domain APS58_2916 PF11737 Protein of unknown function (DUF3300) APS58_2918 PF00360 Phytochrome region APS58_2918 PF00563 EAL domain APS58_2918 PF01590 GAF domain APS58_2918 PF00990 Diguanylate cyclase, GGDEF domain APS58_2919 PF01336 OB-fold nucleic acid binding domain APS58_2919 PF00152 tRNA synthetases class II (D, K and N) APS58_2924 PF02397 Bacterial sugar transferase APS58_2927 PF02325 YGGT family APS58_2928 PF01039 Carboxyl transferase domain APS58_2928 PF17848 Acetyl-coA carboxylase zinc finger domain APS58_2929 PF00290 Tryptophan synthase alpha chain APS58_2930 PF00291 Pyridoxal-phosphate dependent enzyme APS58_2931 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase APS58_2932 PF01416 tRNA pseudouridine synthase APS58_2934 PF02774 Semialdehyde dehydrogenase, dimerisation domain APS58_2934 PF01118 Semialdehyde dehydrogenase, NAD binding domain APS58_2937 PF00180 Isocitrate/isopropylmalate dehydrogenase APS58_2938 PF00694 Aconitase C-terminal domain APS58_2940 PF00330 Aconitase family (aconitate hydratase) APS58_2942 PF00226 DnaJ domain APS58_2942 PF00684 DnaJ central domain APS58_2942 PF01556 DnaJ C terminal domain APS58_2943 PF00012 Hsp70 protein APS58_2944 PF01025 GrpE APS58_2945 PF01250 Ribosomal protein S6 APS58_2947 PF01084 Ribosomal protein S18 APS58_2948 PF01281 Ribosomal protein L9, N-terminal domain APS58_2948 PF03948 Ribosomal protein L9, C-terminal domain APS58_2949 PF03796 DnaB-like helicase C terminal domain APS58_2949 PF00772 DnaB-like helicase N terminal domain APS58_2951 PF02562 PhoH-like protein APS58_2951 PF13638 PIN domain APS58_2952 PF00578 AhpC/TSA family APS58_2954 PF00239 Resolvase, N terminal domain APS58_2967 PF00155 Aminotransferase class I and II APS58_2968 PF03447 Homoserine dehydrogenase, NAD binding domain APS58_2968 PF00742 Homoserine dehydrogenase APS58_2968 PF01842 ACT domain APS58_2969 PF00291 Pyridoxal-phosphate dependent enzyme APS58_2969 PF14821 Threonine synthase N terminus APS58_2970 PF03205 Molybdopterin guanine dinucleotide synthesis protein B APS58_2971 PF03454 MoeA C-terminal region (domain IV) APS58_2971 PF03453 MoeA N-terminal region (domain I and II) APS58_2971 PF00994 Probable molybdopterin binding domain APS58_2972 PF02597 ThiS family APS58_2973 PF00701 Dihydrodipicolinate synthetase family APS58_2978 PF02391 MoaE protein APS58_2979 PF17871 AAA lid domain APS58_2979 PF07724 AAA domain (Cdc48 subfamily) APS58_2979 PF02861 Clp amino terminal domain, pathogenicity island component APS58_2979 PF10431 C-terminal, D2-small domain, of ClpB protein APS58_2979 PF00004 ATPase family associated with various cellular activities (AAA) APS58_2981 PF00171 Aldehyde dehydrogenase family APS58_2983 PF05175 Methyltransferase small domain APS58_2985 PF01207 Dihydrouridine synthase (Dus) APS58_2986 PF13091 PLD-like domain APS58_2989 PF00312 Ribosomal protein S15 APS58_2990 PF00013 KH domain APS58_2990 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain APS58_2990 PF01138 3' exoribonuclease family, domain 1 APS58_2990 PF03725 3' exoribonuclease family, domain 2 APS58_2990 PF00575 S1 RNA binding domain APS58_2991 PF00550 Phosphopantetheine attachment site APS58_2991 PF08659 KR domain APS58_2991 PF02801 Beta-ketoacyl synthase, C-terminal domain APS58_2991 PF14765 Polyketide synthase dehydratase APS58_2991 PF00698 Acyl transferase domain APS58_2991 PF08240 Alcohol dehydrogenase GroES-like domain APS58_2991 PF16197 Ketoacyl-synthetase C-terminal extension APS58_2991 PF00109 Beta-ketoacyl synthase, N-terminal domain APS58_2992 PF00121 Triosephosphate isomerase APS58_2993 PF03840 Preprotein translocase SecG subunit APS58_2995 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 APS58_2996 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit APS58_2997 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit APS58_2998 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit APS58_3000 PF10531 SLBB domain APS58_3000 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region APS58_3000 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit APS58_3001 PF09326 NADH-ubiquinone oxidoreductase subunit G, C-terminal APS58_3001 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region APS58_3001 PF00384 Molybdopterin oxidoreductase APS58_3002 PF00146 NADH dehydrogenase APS58_3003 PF12838 4Fe-4S dicluster domain APS58_3004 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 APS58_3005 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L APS58_3006 PF00361 Proton-conducting membrane transporter APS58_3006 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus APS58_3007 PF00361 Proton-conducting membrane transporter APS58_3007 PF01059 NADH-ubiquinone oxidoreductase chain 4, amino terminus APS58_3008 PF00361 Proton-conducting membrane transporter APS58_3011 PF00005 ABC transporter APS58_3011 PF00664 ABC transporter transmembrane region APS58_3012 PF12399 Branched-chain amino acid ATP-binding cassette transporter APS58_3012 PF00005 ABC transporter APS58_3013 PF00005 ABC transporter APS58_3016 PF02653 Branched-chain amino acid transport system / permease component APS58_3020 PF13181 Tetratricopeptide repeat APS58_3020 PF00535 Glycosyl transferase family 2 APS58_3024 PF00011 Hsp20/alpha crystallin family APS58_3025 PF00005 ABC transporter APS58_3027 PF05368 NmrA-like family APS58_3028 PF01638 HxlR-like helix-turn-helix APS58_3029 PF12146 Serine aminopeptidase, S33 APS58_3030 PF03009 Glycerophosphoryl diester phosphodiesterase family APS58_3032 PF08676 MutL C terminal dimerisation domain APS58_3032 PF01119 DNA mismatch repair protein, C-terminal domain APS58_3033 PF09335 SNARE associated Golgi protein APS58_3034 PF00561 alpha/beta hydrolase fold APS58_3037 PF11741 AMIN domain APS58_3037 PF01520 N-acetylmuramoyl-L-alanine amidase APS58_3038 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE APS58_3039 PF08331 Domain of unknown function (DUF1730) APS58_3041 PF03466 LysR substrate binding domain APS58_3041 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family APS58_3042 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain APS58_3042 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain APS58_3044 PF03401 Tripartite tricarboxylate transporter family receptor APS58_3045 PF00589 Phage integrase family APS58_3045 PF02899 Phage integrase, N-terminal SAM-like domain APS58_3046 PF03401 Tripartite tricarboxylate transporter family receptor APS58_3048 PF08668 HDOD domain APS58_3048 PF00563 EAL domain APS58_3049 PF08668 HDOD domain APS58_3049 PF00563 EAL domain APS58_3050 PF04305 Protein of unknown function (DUF455) APS58_3051 PF00132 Bacterial transferase hexapeptide (six repeats) APS58_3052 PF01430 Hsp33 protein APS58_3054 PF04977 Septum formation initiator APS58_3055 PF03952 Enolase, N-terminal domain APS58_3055 PF00113 Enolase, C-terminal TIM barrel domain APS58_3059 PF00793 DAHP synthetase I family APS58_3060 PF06418 CTP synthase N-terminus APS58_3060 PF00117 Glutamine amidotransferase class-I APS58_3061 PF02441 Flavoprotein APS58_3061 PF04127 DNA / pantothenate metabolism flavoprotein APS58_3062 PF00692 dUTPase APS58_3064 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase APS58_3065 PF08007 Cupin superfamily protein APS58_3068 PF00753 Metallo-beta-lactamase superfamily APS58_3069 PF06804 NlpB/DapX lipoprotein APS58_3070 PF00701 Dihydrodipicolinate synthetase family APS58_3074 PF01751 Toprim domain APS58_3074 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APS58_3074 PF00986 DNA gyrase B subunit, carboxyl terminus APS58_3074 PF00204 DNA gyrase B APS58_3075 PF01464 Transglycosylase SLT domain APS58_3076 PF00521 DNA gyrase/topoisomerase IV, subunit A APS58_3077 PF00672 HAMP domain APS58_3077 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain APS58_3077 PF02203 Tar ligand binding domain homologue APS58_3078 PF00672 HAMP domain APS58_3078 PF02203 Tar ligand binding domain homologue APS58_3078 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain APS58_3079 PF08543 Phosphomethylpyrimidine kinase APS58_3087 PF00753 Metallo-beta-lactamase superfamily APS58_3087 PF03772 Competence protein APS58_3088 PF14403 Circularly permuted ATP-grasp type 2 APS58_3091 PF00293 NUDIX domain APS58_3092 PF05221 S-adenosyl-L-homocysteine hydrolase APS58_3092 PF00670 S-adenosyl-L-homocysteine hydrolase, NAD binding domain APS58_3094 PF09905 DNA-binding protein VF530 APS58_3095 PF03466 LysR substrate binding domain APS58_3095 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family APS58_3096 PF07859 alpha/beta hydrolase fold APS58_3097 PF13533 Biotin-lipoyl like APS58_3098 PF00873 AcrB/AcrD/AcrF family APS58_3099 PF02321 Outer membrane efflux protein APS58_3100 PF00171 Aldehyde dehydrogenase family APS58_3102 PF07715 TonB-dependent Receptor Plug Domain APS58_3102 PF00593 TonB dependent receptor APS58_3110 PF00210 Ferritin-like domain APS58_3111 PF10417 C-terminal domain of 1-Cys peroxiredoxin APS58_3111 PF00578 AhpC/TSA family APS58_3112 PF13192 Thioredoxin domain APS58_3112 PF07992 Pyridine nucleotide-disulphide oxidoreductase APS58_3113 PF05506 Domain of unknown function (DUF756) APS58_3113 PF04185 Phosphoesterase family APS58_3117 PF03618 Kinase/pyrophosphorylase APS58_3118 PF00391 PEP-utilising enzyme, mobile domain APS58_3118 PF02896 PEP-utilising enzyme, TIM barrel domain APS58_3118 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain APS58_3120 PF00474 Sodium:solute symporter family APS58_3123 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase APS58_3125 PF02515 CoA-transferase family III APS58_3126 PF00892 EamA-like transporter family APS58_3127 PF06903 VirK protein APS58_3128 PF03466 LysR substrate binding domain APS58_3128 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family APS58_3129 PF00701 Dihydrodipicolinate synthetase family APS58_3130 PF03401 Tripartite tricarboxylate transporter family receptor APS58_3132 PF13378 Enolase C-terminal domain-like APS58_3135 PF08546 Ketopantoate reductase PanE/ApbA C terminal APS58_3135 PF02558 Ketopantoate reductase PanE/ApbA APS58_3140 PF02203 Tar ligand binding domain homologue APS58_3140 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain APS58_3140 PF00672 HAMP domain APS58_3141 PF04542 Sigma-70 region 2 APS58_3141 PF04539 Sigma-70 region 3 APS58_3141 PF00140 Sigma-70 factor, region 1.2 APS58_3141 PF03979 Sigma-70 factor, region 1.1 APS58_3141 PF04546 Sigma-70, non-essential region APS58_3141 PF04545 Sigma-70, region 4 APS58_3142 PF08275 DNA primase catalytic core, N-terminal domain APS58_3142 PF01807 CHC2 zinc finger APS58_3142 PF10410 DnaB-helicase binding domain of primase APS58_3142 PF08278 DNA primase DnaG DnaB-binding APS58_3142 PF13662 Toprim domain APS58_3143 PF13188 PAS domain APS58_3143 PF03707 Bacterial signalling protein N terminal repeat APS58_3143 PF00990 Diguanylate cyclase, GGDEF domain APS58_3143 PF00563 EAL domain APS58_3144 PF03480 Bacterial extracellular solute-binding protein, family 7 APS58_3146 PF09423 PhoD-like phosphatase APS58_3146 PF16655 PhoD-like phosphatase, N-terminal domain APS58_3147 PF00990 Diguanylate cyclase, GGDEF domain APS58_3147 PF00072 Response regulator receiver domain APS58_3148 PF00698 Acyl transferase domain APS58_3148 PF08240 Alcohol dehydrogenase GroES-like domain APS58_3148 PF00107 Zinc-binding dehydrogenase APS58_3148 PF16197 Ketoacyl-synthetase C-terminal extension APS58_3148 PF00109 Beta-ketoacyl synthase, N-terminal domain APS58_3148 PF02801 Beta-ketoacyl synthase, C-terminal domain APS58_3148 PF08659 KR domain APS58_3148 PF00550 Phosphopantetheine attachment site APS58_3148 PF14765 Polyketide synthase dehydratase APS58_3149 PF01975 Survival protein SurE APS58_3152 PF00849 RNA pseudouridylate synthase APS58_3152 PF01479 S4 domain APS58_3153 PF04079 Segregation and condensation complex subunit ScpB APS58_3154 PF00849 RNA pseudouridylate synthase APS58_3154 PF01479 S4 domain APS58_3155 PF00334 Nucleoside diphosphate kinase APS58_3156 PF04055 Radical SAM superfamily APS58_3159 PF04551 GcpE protein APS58_3160 PF13393 Histidyl-tRNA synthetase APS58_3160 PF03129 Anticodon binding domain APS58_3162 PF13360 PQQ-like domain APS58_3163 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal APS58_3163 PF01926 50S ribosome-binding GTPase APS58_3164 PF17209 Hfq protein APS58_3165 PF13167 GTP-binding GTPase N-terminal APS58_3165 PF01926 50S ribosome-binding GTPase APS58_3165 PF16360 GTP-binding GTPase Middle Region APS58_3166 PF12221 Bacterial membrane protein N terminal APS58_3166 PF01145 SPFH domain / Band 7 family APS58_3167 PF01145 SPFH domain / Band 7 family APS58_3168 PF13393 Histidyl-tRNA synthetase APS58_3169 PF00709 Adenylosuccinate synthetase APS58_3170 PF00156 Phosphoribosyl transferase domain APS58_3176 PF00849 RNA pseudouridylate synthase APS58_3176 PF01479 S4 domain APS58_3184 PF00989 PAS fold APS58_3184 PF00512 His Kinase A (phospho-acceptor) domain APS58_3184 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APS58_3185 PF02954 Bacterial regulatory protein, Fis family APS58_3185 PF00158 Sigma-54 interaction domain APS58_3185 PF00072 Response regulator receiver domain APS58_3187 PF03372 Endonuclease/Exonuclease/phosphatase family APS58_3188 PF00186 Dihydrofolate reductase APS58_3190 PF00303 Thymidylate synthase APS58_3192 PF01565 FAD binding domain APS58_3192 PF02913 FAD linked oxidases, C-terminal domain APS58_3194 PF03631 Virulence factor BrkB APS58_3195 PF01593 Flavin containing amine oxidoreductase APS58_3200 PF02190 ATP-dependent protease La (LON) substrate-binding domain APS58_3200 PF05362 Lon protease (S16) C-terminal proteolytic domain APS58_3200 PF00004 ATPase family associated with various cellular activities (AAA) APS58_3201 PF06689 ClpX C4-type zinc finger APS58_3201 PF07724 AAA domain (Cdc48 subfamily) APS58_3201 PF10431 C-terminal, D2-small domain, of ClpB protein APS58_3202 PF00574 Clp protease APS58_3203 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase APS58_3203 PF05698 Bacterial trigger factor protein (TF) C-terminus APS58_3203 PF05697 Bacterial trigger factor protein (TF) APS58_3205 PF00873 AcrB/AcrD/AcrF family APS58_3206 PF13533 Biotin-lipoyl like APS58_3210 PF03793 PASTA domain APS58_3210 PF00069 Protein kinase domain APS58_3216 PF00691 OmpA family APS58_3216 PF13488 Glycine zipper APS58_3226 PF17871 AAA lid domain APS58_3226 PF07724 AAA domain (Cdc48 subfamily) APS58_3226 PF00004 ATPase family associated with various cellular activities (AAA) APS58_3226 PF10431 C-terminal, D2-small domain, of ClpB protein APS58_3229 PF01863 Protein of unknown function DUF45 APS58_3230 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase APS58_3230 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain APS58_3231 PF03450 CO dehydrogenase flavoprotein C-terminal domain APS58_3231 PF00941 FAD binding domain in molybdopterin dehydrogenase APS58_3232 PF10518 TAT (twin-arginine translocation) pathway signal sequence APS58_3232 PF01799 [2Fe-2S] binding domain APS58_3232 PF00111 2Fe-2S iron-sulfur cluster binding domain APS58_3233 PF01177 Asp/Glu/Hydantoin racemase APS58_3235 PF03707 Bacterial signalling protein N terminal repeat APS58_3235 PF00990 Diguanylate cyclase, GGDEF domain APS58_3235 PF00563 EAL domain APS58_3236 PF00206 Lyase APS58_3236 PF10415 Fumarase C C-terminus APS58_3238 PF00072 Response regulator receiver domain APS58_3238 PF00486 Transcriptional regulatory protein, C terminal APS58_3239 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APS58_3239 PF00672 HAMP domain APS58_3239 PF00512 His Kinase A (phospho-acceptor) domain APS58_3240 PF04069 Substrate binding domain of ABC-type glycine betaine transport system APS58_3241 PF00528 Binding-protein-dependent transport system inner membrane component APS58_3242 PF00005 ABC transporter APS58_3242 PF00571 CBS domain APS58_3243 PF03350 Uncharacterized protein family, UPF0114 APS58_3244 PF13193 AMP-binding enzyme C-terminal domain APS58_3244 PF00501 AMP-binding enzyme APS58_3244 PF16177 Acetyl-coenzyme A synthetase N-terminus APS58_3248 PF00034 Cytochrome c APS58_3250 PF00920 Dehydratase family APS58_3251 PF00210 Ferritin-like domain APS58_3252 PF13332 Hemagglutinin repeat APS58_3252 PF03543 Yersinia/Haemophilus virulence surface antigen APS58_3252 PF02661 Fic/DOC family APS58_3252 PF13018 Extended Signal Peptide of Type V secretion system APS58_3252 PF05860 haemagglutination activity domain APS58_3253 PF01790 Prolipoprotein diacylglyceryl transferase APS58_3254 PF00392 Bacterial regulatory proteins, gntR family APS58_3254 PF07729 FCD domain APS58_3256 PF03401 Tripartite tricarboxylate transporter family receptor APS58_3257 PF00378 Enoyl-CoA hydratase/isomerase APS58_3258 PF00501 AMP-binding enzyme APS58_3258 PF13193 AMP-binding enzyme C-terminal domain APS58_3259 PF02661 Fic/DOC family APS58_3259 PF13018 Extended Signal Peptide of Type V secretion system APS58_3259 PF13332 Hemagglutinin repeat APS58_3259 PF03543 Yersinia/Haemophilus virulence surface antigen APS58_3259 PF05860 haemagglutination activity domain APS58_3260 PF00582 Universal stress protein family APS58_3262 PF00403 Heavy-metal-associated domain APS58_3264 PF00115 Cytochrome C and Quinol oxidase polypeptide I APS58_3267 PF14715 N-terminal domain of cytochrome oxidase-cbb3, FixP APS58_3267 PF13442 Cytochrome C oxidase, cbb3-type, subunit III APS58_3268 PF13746 4Fe-4S dicluster domain APS58_3268 PF11614 IG-like fold at C-terminal of FixG, putative oxidoreductase APS58_3268 PF12801 4Fe-4S binding domain APS58_3271 PF00027 Cyclic nucleotide-binding domain APS58_3271 PF13545 Crp-like helix-turn-helix domain APS58_3272 PF06969 HemN C-terminal domain APS58_3272 PF04055 Radical SAM superfamily APS58_3274 PF00072 Response regulator receiver domain APS58_3275 PF03707 Bacterial signalling protein N terminal repeat APS58_3275 PF00563 EAL domain APS58_3275 PF00990 Diguanylate cyclase, GGDEF domain APS58_3278 PF00593 TonB dependent receptor APS58_3278 PF07715 TonB-dependent Receptor Plug Domain APS58_3279 PF07685 CobB/CobQ-like glutamine amidotransferase domain APS58_3279 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain APS58_3280 PF02283 Cobinamide kinase / cobinamide phosphate guanyltransferase APS58_3282 PF01032 FecCD transport family APS58_3283 PF00005 ABC transporter APS58_3284 PF02572 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP APS58_3284 PF12557 Cob(I)alamin adenosyltransferase N terminal APS58_3285 PF00881 Nitroreductase family APS58_3286 PF03186 CobD/Cbib protein APS58_3289 PF15457 Type III T3SS secreted effector HopW1-1/HopPmaA APS58_3294 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain APS58_3294 PF07685 CobB/CobQ-like glutamine amidotransferase domain APS58_3295 PF02277 Phosphoribosyltransferase APS58_3300 PF00083 Sugar (and other) transporter APS58_3302 PF00583 Acetyltransferase (GNAT) family APS58_3304 PF10576 Iron-sulfur binding domain of endonuclease III APS58_3304 PF00730 HhH-GPD superfamily base excision DNA repair protein APS58_3304 PF00633 Helix-hairpin-helix motif APS58_3305 PF00155 Aminotransferase class I and II APS58_3309 PF00271 Helicase conserved C-terminal domain APS58_3309 PF00270 DEAD/DEAH box helicase APS58_3313 PF04405 Domain of Unknown function (DUF542) APS58_3313 PF01814 Hemerythrin HHE cation binding domain APS58_3314 PF02082 Transcriptional regulator APS58_3315 PF03466 LysR substrate binding domain APS58_3315 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family APS58_3316 PF01810 LysE type translocator APS58_3317 PF03180 NLPA lipoprotein APS58_3320 PF07519 Tannase and feruloyl esterase APS58_3322 PF17757 UvrB interaction domain APS58_3322 PF03461 TRCF domain APS58_3322 PF02559 CarD-like/TRCF domain APS58_3322 PF00270 DEAD/DEAH box helicase APS58_3322 PF00271 Helicase conserved C-terminal domain APS58_3323 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase APS58_3323 PF02542 YgbB family APS58_3324 PF02542 YgbB family APS58_3324 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase APS58_3325 PF00512 His Kinase A (phospho-acceptor) domain APS58_3325 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APS58_3325 PF00672 HAMP domain APS58_3326 PF00486 Transcriptional regulatory protein, C terminal APS58_3326 PF00072 Response regulator receiver domain APS58_3328 PF00106 short chain dehydrogenase APS58_3330 PF13291 ACT domain APS58_3330 PF02824 TGS domain APS58_3330 PF04607 Region found in RelA / SpoT proteins APS58_3338 PF01965 DJ-1/PfpI family APS58_3340 PF05233 PHB accumulation regulatory domain APS58_3340 PF07879 PHB/PHA accumulation regulator DNA-binding domain APS58_3341 PF18693 TRAM domain APS58_3341 PF04055 Radical SAM superfamily APS58_3341 PF00919 Uncharacterized protein family UPF0004 APS58_3343 PF07690 Major Facilitator Superfamily APS58_3345 PF09285 Elongation factor P, C-terminal APS58_3345 PF08207 Elongation factor P (EF-P) KOW-like domain APS58_3345 PF01132 Elongation factor P (EF-P) OB domain APS58_3348 PF02515 CoA-transferase family III APS58_3349 PF00682 HMGL-like APS58_3350 PF03401 Tripartite tricarboxylate transporter family receptor APS58_3351 PF03401 Tripartite tricarboxylate transporter family receptor APS58_3353 PF01112 Asparaginase APS58_3354 PF00005 ABC transporter APS58_3354 PF08352 Oligopeptide/dipeptide transporter, C-terminal region APS58_3355 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle APS58_3356 PF00528 Binding-protein-dependent transport system inner membrane component APS58_3357 PF00528 Binding-protein-dependent transport system inner membrane component APS58_3357 PF12911 N-terminal TM domain of oligopeptide transport permease C APS58_3358 PF03576 Peptidase family S58 APS58_3361 PF01541 GIY-YIG catalytic domain APS58_3361 PF08459 UvrC Helix-hairpin-helix N-terminal APS58_3362 PF01066 CDP-alcohol phosphatidyltransferase APS58_3363 PF00216 Bacterial DNA-binding protein APS58_3380 PF00145 C-5 cytosine-specific DNA methylase APS58_3394 PF03354 Phage Terminase APS58_3401 PF10668 Phage terminase small subunit APS58_3401 PF03592 Terminase small subunit APS58_3427 PF12441 CopG antitoxin of type II toxin-antitoxin system APS58_3444 PF01757 Acyltransferase family APS58_3446 PF03401 Tripartite tricarboxylate transporter family receptor APS58_3447 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain APS58_3447 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain APS58_3449 PF03442 Carbohydrate binding domain X2 APS58_3449 PF00942 Cellulose binding domain APS58_3452 PF00561 alpha/beta hydrolase fold APS58_3454 PF01494 FAD binding domain APS58_3455 PF00171 Aldehyde dehydrogenase family APS58_3456 PF00171 Aldehyde dehydrogenase family APS58_3457 PF00881 Nitroreductase family APS58_3461 PF07044 Protein of unknown function (DUF1329) APS58_3462 PF00171 Aldehyde dehydrogenase family APS58_3463 PF12833 Helix-turn-helix domain APS58_3466 PF00202 Aminotransferase class-III APS58_3472 PF02254 TrkA-N domain APS58_3472 PF00999 Sodium/hydrogen exchanger family APS58_3474 PF00270 DEAD/DEAH box helicase APS58_3474 PF00271 Helicase conserved C-terminal domain APS58_3475 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain APS58_3475 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain APS58_3476 PF00005 ABC transporter APS58_3476 PF12848 ABC transporter APS58_3479 PF03576 Peptidase family S58 APS58_3482 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family APS58_3482 PF03466 LysR substrate binding domain APS58_3485 PF07731 Multicopper oxidase APS58_3485 PF07732 Multicopper oxidase APS58_3485 PF00394 Multicopper oxidase APS58_3490 PF00403 Heavy-metal-associated domain APS58_3491 PF13411 MerR HTH family regulatory protein APS58_3497 PF03853 YjeF-related protein N-terminus APS58_3497 PF01256 Carbohydrate kinase APS58_3498 PF01266 FAD dependent oxidoreductase APS58_3499 PF00318 Ribosomal protein S2 APS58_3500 PF00889 Elongation factor TS APS58_3501 PF00696 Amino acid kinase family APS58_3502 PF01765 Ribosome recycling factor APS58_3503 PF01255 Putative undecaprenyl diphosphate synthase APS58_3505 PF13288 DXP reductoisomerase C-terminal domain APS58_3505 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase APS58_3505 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain APS58_3506 PF17820 PDZ domain APS58_3506 PF02163 Peptidase family M50 APS58_3507 PF01103 Surface antigen APS58_3507 PF07244 Surface antigen variable number repeat APS58_3509 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD APS58_3509 PF00132 Bacterial transferase hexapeptide (six repeats) APS58_3510 PF07977 FabA-like domain APS58_3511 PF00132 Bacterial transferase hexapeptide (six repeats) APS58_3511 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 APS58_3512 PF02684 Lipid-A-disaccharide synthetase APS58_3513 PF01351 Ribonuclease HII APS58_3514 PF00588 SpoU rRNA Methylase family APS58_3514 PF08032 RNA 2'-O ribose methyltransferase substrate binding APS58_3515 PF02515 CoA-transferase family III APS58_3516 PF03401 Tripartite tricarboxylate transporter family receptor APS58_3517 PF02770 Acyl-CoA dehydrogenase, middle domain APS58_3517 PF00441 Acyl-CoA dehydrogenase, C-terminal domain APS58_3517 PF18158 Adaptive response protein AidB N-terminal domain APS58_3518 PF03466 LysR substrate binding domain APS58_3518 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family APS58_3520 PF00316 Fructose-1-6-bisphosphatase, N-terminal domain APS58_3521 PF01433 Peptidase family M1 domain APS58_3521 PF17432 Domain of unknown function (DUF3458_C) ARM repeats APS58_3521 PF11940 Domain of unknown function (DUF3458) Ig-like fold APS58_3523 PF02463 RecF/RecN/SMC N terminal domain APS58_3524 PF03462 PCRF domain APS58_3524 PF00472 RF-1 domain APS58_3525 PF03462 PCRF domain APS58_3525 PF00472 RF-1 domain APS58_3527 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain APS58_3527 PF06827 Zinc finger found in FPG and IleRS APS58_3527 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain APS58_3528 PF00248 Aldo/keto reductase family APS58_3529 PF04073 Aminoacyl-tRNA editing domain APS58_3530 PF02660 Glycerol-3-phosphate acyltransferase APS58_3533 PF04461 Protein of unknown function (DUF520) APS58_3534 PF01565 FAD binding domain APS58_3534 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain APS58_3535 PF00764 Arginosuccinate synthase APS58_3536 PF06865 Pyrimidine/purine nucleoside phosphorylase APS58_3538 PF03960 ArsC family APS58_3539 PF02875 Mur ligase family, glutamate ligase domain APS58_3539 PF08245 Mur ligase middle domain APS58_3541 PF02674 Colicin V production protein APS58_3542 PF00156 Phosphoribosyl transferase domain APS58_3543 PF01053 Cys/Met metabolism PLP-dependent enzyme APS58_3544 PF00749 tRNA synthetases class I (E and Q), catalytic domain APS58_3552 PF07690 Major Facilitator Superfamily APS58_3553 PF07690 Major Facilitator Superfamily APS58_3559 PF16921 Tex protein YqgF-like domain APS58_3559 PF09371 Tex-like protein N-terminal domain APS58_3559 PF00575 S1 RNA binding domain APS58_3559 PF17674 HHH domain APS58_3562 PF00465 Iron-containing alcohol dehydrogenase APS58_3563 PF01557 Fumarylacetoacetate (FAA) hydrolase family APS58_3564 PF07859 alpha/beta hydrolase fold APS58_3566 PF01571 Aminomethyltransferase folate-binding domain APS58_3567 PF02618 YceG-like family APS58_3568 PF02223 Thymidylate kinase APS58_3571 PF01026 TatD related DNase APS58_3573 PF00664 ABC transporter transmembrane region APS58_3573 PF00005 ABC transporter APS58_3574 PF07676 WD40-like Beta Propeller Repeat APS58_3574 PF04052 TolB amino-terminal domain APS58_3575 PF00691 OmpA family APS58_3577 PF00899 ThiF family APS58_3580 PF13458 Periplasmic binding protein APS58_3581 PF02423 Ornithine cyclodeaminase/mu-crystallin family APS58_3591 PF03466 LysR substrate binding domain APS58_3591 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family APS58_3594 PF03401 Tripartite tricarboxylate transporter family receptor APS58_3597 PF13442 Cytochrome C oxidase, cbb3-type, subunit III APS58_3597 PF00034 Cytochrome c APS58_3597 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase APS58_3599 PF02576 RimP N-terminal domain APS58_3600 PF00575 S1 RNA binding domain APS58_3600 PF08529 NusA N-terminal domain APS58_3600 PF13184 NusA-like KH domain APS58_3601 PF00009 Elongation factor Tu GTP binding domain APS58_3601 PF11987 Translation-initiation factor 2 APS58_3601 PF04760 Translation initiation factor IF-2, N-terminal region APS58_3601 PF08364 Bacterial translation initiation factor IF-2 associated region APS58_3602 PF02033 Ribosome-binding factor A APS58_3603 PF01509 TruB family pseudouridylate synthase (N terminal domain) APS58_3603 PF16198 tRNA pseudouridylate synthase B C-terminal domain APS58_3605 PF03471 Transporter associated domain APS58_3605 PF03741 Integral membrane protein TerC family APS58_3606 PF00378 Enoyl-CoA hydratase/isomerase APS58_3608 PF04542 Sigma-70 region 2 APS58_3608 PF08281 Sigma-70, region 4 APS58_3610 PF01668 SmpB protein APS58_3611 PF03364 Polyketide cyclase / dehydrase and lipid transport APS58_3612 PF03658 RnfH family Ubiquitin APS58_3614 PF00571 CBS domain APS58_3614 PF00478 IMP dehydrogenase / GMP reductase domain APS58_3617 PF00958 GMP synthase C terminal domain APS58_3617 PF02540 NAD synthase APS58_3617 PF00117 Glutamine amidotransferase class-I APS58_3618 PF13356 Arm DNA-binding domain APS58_3618 PF00589 Phage integrase family APS58_3627 PF02384 N-6 DNA Methylase APS58_3627 PF12161 HsdM N-terminal domain APS58_3628 PF01420 Type I restriction modification DNA specificity domain APS58_3629 PF02463 RecF/RecN/SMC N terminal domain APS58_3634 PF03466 LysR substrate binding domain APS58_3634 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family APS58_3639 PF04717 Type VI secretion system, phage-baseplate injector APS58_3641 PF05593 RHS Repeat APS58_3641 PF03527 RHS protein APS58_3649 PF13649 Methyltransferase domain APS58_3650 PF07992 Pyridine nucleotide-disulphide oxidoreductase APS58_3653 PF00313 'Cold-shock' DNA-binding domain APS58_3654 PF00293 NUDIX domain APS58_3658 PF03401 Tripartite tricarboxylate transporter family receptor APS58_3659 PF02798 Glutathione S-transferase, N-terminal domain APS58_3659 PF00043 Glutathione S-transferase, C-terminal domain APS58_3661 PF07715 TonB-dependent Receptor Plug Domain APS58_3661 PF00593 TonB dependent receptor APS58_3662 PF00005 ABC transporter APS58_3664 PF01032 FecCD transport family APS58_3666 PF14850 DNA-binding domain of Proline dehydrogenase APS58_3666 PF01619 Proline dehydrogenase APS58_3666 PF18327 Proline utilization A proline dehydrogenase N-terminal domain APS58_3666 PF00171 Aldehyde dehydrogenase family APS58_3667 PF01037 Lrp/AsnC ligand binding domain APS58_3669 PF05958 tRNA (Uracil-5-)-methyltransferase APS58_3671 PF01027 Inhibitor of apoptosis-promoting Bax1 APS58_3672 PF03928 Haem-degrading APS58_3674 PF02472 Biopolymer transport protein ExbD/TolR APS58_3675 PF01618 MotA/TolQ/ExbB proton channel family APS58_3678 PF09361 Phasin protein APS58_3681 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family APS58_3681 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain APS58_3682 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain APS58_3682 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain APS58_3683 PF02646 RmuC family APS58_3688 PF02537 CrcB-like protein, Camphor Resistance (CrcB) APS58_3689 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component APS58_3693 PF05378 Hydantoinase/oxoprolinase N-terminal region APS58_3693 PF01968 Hydantoinase/oxoprolinase APS58_3695 PF04066 Multiple resistance and pH regulation protein F (MrpF / PhaF) APS58_3697 PF00361 Proton-conducting membrane transporter APS58_3698 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L APS58_3699 PF04039 Domain related to MnhB subunit of Na+/H+ antiporter APS58_3699 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus APS58_3699 PF13244 Domain of unknown function (DUF4040) APS58_3699 PF00361 Proton-conducting membrane transporter APS58_3700 PF18073 Rubredoxin metal binding domain APS58_3702 PF00216 Bacterial DNA-binding protein APS58_3703 PF00575 S1 RNA binding domain APS58_3704 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) APS58_3705 PF02153 Prephenate dehydrogenase APS58_3706 PF01817 Chorismate mutase type II APS58_3706 PF01842 ACT domain APS58_3706 PF00800 Prephenate dehydratase APS58_3707 PF00266 Aminotransferase class-V APS58_3708 PF03989 DNA gyrase C-terminal domain, beta-propeller APS58_3708 PF00521 DNA gyrase/topoisomerase IV, subunit A APS58_3709 PF00691 OmpA family APS58_3711 PF13419 Haloacid dehalogenase-like hydrolase APS58_3714 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APS58_3714 PF00672 HAMP domain APS58_3714 PF00512 His Kinase A (phospho-acceptor) domain APS58_3715 PF00072 Response regulator receiver domain APS58_3715 PF00486 Transcriptional regulatory protein, C terminal APS58_3717 PF01970 Tripartite tricarboxylate transporter TctA family APS58_3718 PF03401 Tripartite tricarboxylate transporter family receptor APS58_3729 PF01145 SPFH domain / Band 7 family APS58_3731 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain APS58_3731 PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain APS58_3731 PF01276 Orn/Lys/Arg decarboxylase, major domain APS58_3732 PF02469 Fasciclin domain APS58_3734 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle APS58_3735 PF00528 Binding-protein-dependent transport system inner membrane component APS58_3736 PF12911 N-terminal TM domain of oligopeptide transport permease C APS58_3736 PF00528 Binding-protein-dependent transport system inner membrane component APS58_3737 PF08352 Oligopeptide/dipeptide transporter, C-terminal region APS58_3737 PF00005 ABC transporter APS58_3738 PF08447 PAS fold APS58_3738 PF05231 MASE1 APS58_3738 PF13426 PAS domain APS58_3738 PF00990 Diguanylate cyclase, GGDEF domain APS58_3738 PF00563 EAL domain APS58_3738 PF08448 PAS fold APS58_3739 PF01594 AI-2E family transporter APS58_3740 PF16078 2-oxoglutarate dehydrogenase N-terminus APS58_3740 PF00676 Dehydrogenase E1 component APS58_3740 PF02779 Transketolase, pyrimidine binding domain APS58_3740 PF16870 2-oxoglutarate dehydrogenase C-terminal APS58_3741 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) APS58_3741 PF00364 Biotin-requiring enzyme APS58_3741 PF02817 e3 binding domain APS58_3742 PF07992 Pyridine nucleotide-disulphide oxidoreductase APS58_3742 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain APS58_3743 PF03969 AFG1-like ATPase APS58_3746 PF13307 Helicase C-terminal domain APS58_3746 PF04851 Type III restriction enzyme, res subunit APS58_3747 PF13525 Outer membrane lipoprotein APS58_3748 PF07733 Bacterial DNA polymerase III alpha NTPase domain APS58_3748 PF17657 Bacterial DNA polymerase III alpha subunit finger domain APS58_3748 PF14579 Helix-hairpin-helix motif APS58_3748 PF02811 PHP domain APS58_3748 PF01336 OB-fold nucleic acid binding domain APS58_3749 PF02617 ATP-dependent Clp protease adaptor protein ClpS APS58_3750 PF00004 ATPase family associated with various cellular activities (AAA) APS58_3750 PF07724 AAA domain (Cdc48 subfamily) APS58_3750 PF10431 C-terminal, D2-small domain, of ClpB protein APS58_3750 PF02861 Clp amino terminal domain, pathogenicity island component APS58_3750 PF17871 AAA lid domain APS58_3751 PF13406 Transglycosylase SLT domain APS58_3752 PF08411 Exonuclease C-terminal APS58_3752 PF00929 Exonuclease APS58_3753 PF02146 Sir2 family APS58_3754 PF00158 Sigma-54 interaction domain APS58_3754 PF02954 Bacterial regulatory protein, Fis family APS58_3754 PF01590 GAF domain APS58_3757 PF08240 Alcohol dehydrogenase GroES-like domain APS58_3757 PF00107 Zinc-binding dehydrogenase APS58_3758 PF00171 Aldehyde dehydrogenase family APS58_3759 PF00226 DnaJ domain APS58_3759 PF01556 DnaJ C terminal domain APS58_3759 PF00684 DnaJ central domain APS58_3766 PF07969 Amidohydrolase family APS58_3768 PF13302 Acetyltransferase (GNAT) domain APS58_3772 PF00291 Pyridoxal-phosphate dependent enzyme APS58_3773 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain APS58_3773 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain APS58_3773 PF00378 Enoyl-CoA hydratase/isomerase APS58_3774 PF00043 Glutathione S-transferase, C-terminal domain APS58_3774 PF02798 Glutathione S-transferase, N-terminal domain APS58_3775 PF00384 Molybdopterin oxidoreductase APS58_3775 PF01568 Molydopterin dinucleotide binding domain APS58_3776 PF03401 Tripartite tricarboxylate transporter family receptor APS58_3777 PF00581 Rhodanese-like domain APS58_3778 PF03401 Tripartite tricarboxylate transporter family receptor APS58_3779 PF10397 Adenylosuccinate lyase C-terminus APS58_3779 PF00206 Lyase APS58_3780 PF01565 FAD binding domain APS58_3780 PF02913 FAD linked oxidases, C-terminal domain APS58_3783 PF00753 Metallo-beta-lactamase superfamily APS58_3784 PF05872 Bacterial protein of unknown function (DUF853) APS58_3785 PF01709 Transcriptional regulator APS58_3786 PF02844 Phosphoribosylglycinamide synthetase, N domain APS58_3786 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain APS58_3786 PF02843 Phosphoribosylglycinamide synthetase, C domain APS58_3787 PF01218 Coproporphyrinogen III oxidase APS58_3789 PF02590 Predicted SPOUT methyltransferase APS58_3791 PF02545 Maf-like protein APS58_3792 PF00575 S1 RNA binding domain APS58_3792 PF10150 Ribonuclease E/G family APS58_3801 PF11398 Protein of unknown function (DUF2813) APS58_3803 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APS58_3803 PF00512 His Kinase A (phospho-acceptor) domain APS58_3803 PF07689 KaiB domain APS58_3804 PF12697 Alpha/beta hydrolase family APS58_3806 PF01494 FAD binding domain APS58_3807 PF00106 short chain dehydrogenase APS58_3809 PF00378 Enoyl-CoA hydratase/isomerase APS58_3810 PF00441 Acyl-CoA dehydrogenase, C-terminal domain APS58_3810 PF02770 Acyl-CoA dehydrogenase, middle domain APS58_3810 PF02771 Acyl-CoA dehydrogenase, N-terminal domain APS58_3811 PF13193 AMP-binding enzyme C-terminal domain APS58_3811 PF00501 AMP-binding enzyme APS58_3812 PF13458 Periplasmic binding protein APS58_3813 PF02653 Branched-chain amino acid transport system / permease component APS58_3815 PF00005 ABC transporter APS58_3815 PF12399 Branched-chain amino acid ATP-binding cassette transporter APS58_3816 PF00005 ABC transporter APS58_3819 PF00155 Aminotransferase class I and II APS58_3820 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family APS58_3820 PF03466 LysR substrate binding domain APS58_3824 PF02789 Cytosol aminopeptidase family, N-terminal domain APS58_3824 PF00883 Cytosol aminopeptidase family, catalytic domain APS58_3828 PF01842 ACT domain APS58_3828 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain APS58_3828 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain APS58_3830 PF07238 PilZ domain APS58_3832 PF00582 Universal stress protein family APS58_3834 PF02705 K+ potassium transporter APS58_3835 PF03401 Tripartite tricarboxylate transporter family receptor APS58_3836 PF00106 short chain dehydrogenase APS58_3837 PF00849 RNA pseudouridylate synthase APS58_3838 PF08448 PAS fold APS58_3838 PF00512 His Kinase A (phospho-acceptor) domain APS58_3838 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APS58_3838 PF00072 Response regulator receiver domain APS58_3838 PF13188 PAS domain APS58_3839 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase APS58_3839 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase APS58_3840 PF02347 Glycine cleavage system P-protein APS58_3841 PF01597 Glycine cleavage H-protein APS58_3842 PF01571 Aminomethyltransferase folate-binding domain APS58_3842 PF08669 Glycine cleavage T-protein C-terminal barrel domain APS58_3844 PF01037 Lrp/AsnC ligand binding domain APS58_3845 PF00005 ABC transporter APS58_3846 PF02653 Branched-chain amino acid transport system / permease component APS58_3848 PF08212 Lipocalin-like domain APS58_3851 PF06628 Catalase-related immune-responsive APS58_3851 PF00199 Catalase APS58_3858 PF00141 Peroxidase APS58_3860 PF07992 Pyridine nucleotide-disulphide oxidoreductase APS58_3863 PF01144 Coenzyme A transferase APS58_3864 PF01144 Coenzyme A transferase APS58_3866 PF03401 Tripartite tricarboxylate transporter family receptor APS58_3868 PF03466 LysR substrate binding domain APS58_3868 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family APS58_3870 PF00795 Carbon-nitrogen hydrolase APS58_3870 PF02540 NAD synthase APS58_3871 PF00543 Nitrogen regulatory protein P-II APS58_3872 PF03641 Possible lysine decarboxylase APS58_3873 PF01219 Prokaryotic diacylglycerol kinase APS58_3877 PF04542 Sigma-70 region 2 APS58_3877 PF08281 Sigma-70, region 4 APS58_3879 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain APS58_3879 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain APS58_3879 PF00205 Thiamine pyrophosphate enzyme, central domain APS58_3880 PF10369 Small subunit of acetolactate synthase APS58_3881 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain APS58_3881 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain APS58_3882 PF01066 CDP-alcohol phosphatidyltransferase APS58_3883 PF00682 HMGL-like APS58_3883 PF08502 LeuA allosteric (dimerisation) domain APS58_3884 PF00768 D-alanyl-D-alanine carboxypeptidase APS58_3885 PF01614 Bacterial transcriptional regulator APS58_3885 PF09339 IclR helix-turn-helix domain APS58_3886 PF04377 Arginine-tRNA-protein transferase, C terminus APS58_3886 PF04376 Arginine-tRNA-protein transferase, N terminus APS58_3887 PF03588 Leucyl/phenylalanyl-tRNA protein transferase APS58_3890 PF04304 Protein of unknown function (DUF454) APS58_3891 PF01327 Polypeptide deformylase APS58_3892 PF08335 GlnD PII-uridylyltransferase APS58_3892 PF01966 HD domain APS58_3892 PF01909 Nucleotidyltransferase domain APS58_3893 PF00557 Metallopeptidase family M24 APS58_3894 PF02769 AIR synthase related protein, C-terminal domain APS58_3894 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain APS58_3894 PF18076 Formylglycinamide ribonucleotide amidotransferase N-terminal APS58_3897 PF03707 Bacterial signalling protein N terminal repeat APS58_3897 PF00990 Diguanylate cyclase, GGDEF domain APS58_3897 PF00563 EAL domain APS58_3898 PF05661 Protein of unknown function (DUF808) APS58_3899 PF03922 OmpW family APS58_3900 PF00072 Response regulator receiver domain APS58_3900 PF01627 Hpt domain APS58_3900 PF00512 His Kinase A (phospho-acceptor) domain APS58_3900 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) APS58_3900 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APS58_3900 PF00672 HAMP domain APS58_3902 PF10017 Histidine-specific methyltransferase, SAM-dependent APS58_3903 PF12867 DinB superfamily APS58_3903 PF03781 Sulfatase-modifying factor enzyme 1 APS58_3904 PF01053 Cys/Met metabolism PLP-dependent enzyme APS58_3905 PF00326 Prolyl oligopeptidase family APS58_3905 PF07676 WD40-like Beta Propeller Repeat APS58_3908 PF12392 Collagenase APS58_3908 PF01136 Peptidase family U32 APS58_3910 PF13458 Periplasmic binding protein APS58_3912 PF14437 MafB19-like deaminase APS58_3913 PF17676 LD-carboxypeptidase C-terminal domain APS58_3913 PF02016 LD-carboxypeptidase N-terminal domain APS58_3914 PF16701 Adenylate cyclase regulatory domain APS58_3914 PF00211 Adenylate and Guanylate cyclase catalytic domain APS58_3915 PF01804 Penicillin amidase APS58_3916 PF02771 Acyl-CoA dehydrogenase, N-terminal domain APS58_3916 PF02770 Acyl-CoA dehydrogenase, middle domain APS58_3916 PF00441 Acyl-CoA dehydrogenase, C-terminal domain APS58_3918 PF13545 Crp-like helix-turn-helix domain APS58_3918 PF00027 Cyclic nucleotide-binding domain APS58_3919 PF00378 Enoyl-CoA hydratase/isomerase APS58_3920 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain APS58_3920 PF18321 3-hydroxybutyryl-CoA dehydrogenase reduced Rossmann-fold domain APS58_3920 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain APS58_3922 PF02581 Thiamine monophosphate synthase APS58_3923 PF05690 Thiazole biosynthesis protein ThiG APS58_3925 PF01266 FAD dependent oxidoreductase APS58_3926 PF08543 Phosphomethylpyrimidine kinase APS58_3927 PF00069 Protein kinase domain APS58_3936 PF07992 Pyridine nucleotide-disulphide oxidoreductase APS58_3937 PF11953 Domain of unknown function (DUF3470) APS58_3937 PF00037 4Fe-4S binding domain APS58_3938 PF00009 Elongation factor Tu GTP binding domain APS58_3939 PF01507 Phosphoadenosine phosphosulfate reductase family APS58_3941 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain APS58_3941 PF01077 Nitrite and sulphite reductase 4Fe-4S domain APS58_3942 PF01925 Sulfite exporter TauE/SafE APS58_3945 PF01266 FAD dependent oxidoreductase APS58_3945 PF05430 S-adenosyl-L-methionine-dependent methyltransferase APS58_3946 PF04362 Bacterial Fe(2+) trafficking APS58_3949 PF09084 NMT1/THI5 like APS58_3951 PF00296 Luciferase-like monooxygenase APS58_3953 PF00528 Binding-protein-dependent transport system inner membrane component APS58_3954 PF00005 ABC transporter APS58_3955 PF03459 TOBE domain APS58_3956 PF03466 LysR substrate binding domain APS58_3956 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family APS58_3959 PF00034 Cytochrome c APS58_3962 PF01411 tRNA synthetases class II (A) APS58_3962 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain APS58_3962 PF02272 DHHA1 domain APS58_3963 PF00990 Diguanylate cyclase, GGDEF domain APS58_3963 PF17158 Membrane-associated sensor, integral membrane domain APS58_3964 PF02390 Putative methyltransferase APS58_3965 PF00749 tRNA synthetases class I (E and Q), catalytic domain APS58_3966 PF01593 Flavin containing amine oxidoreductase APS58_3967 PF03466 LysR substrate binding domain APS58_3967 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family APS58_3968 PF17954 Quercetinase C-terminal cupin domain APS58_3968 PF02678 Pirin APS58_3969 PF03358 NADPH-dependent FMN reductase APS58_3970 PF02678 Pirin APS58_3970 PF05726 Pirin C-terminal cupin domain APS58_3972 PF10609 NUBPL iron-transfer P-loop NTPase APS58_3973 PF00990 Diguanylate cyclase, GGDEF domain APS58_3973 PF00072 Response regulator receiver domain APS58_3974 PF00916 Sulfate permease family APS58_3974 PF01740 STAS domain APS58_3976 PF01053 Cys/Met metabolism PLP-dependent enzyme APS58_3978 PF13472 GDSL-like Lipase/Acylhydrolase family APS58_3979 PF00005 ABC transporter APS58_3980 PF08032 RNA 2'-O ribose methyltransferase substrate binding APS58_3980 PF00588 SpoU rRNA Methylase family APS58_3981 PF02146 Sir2 family APS58_3982 PF00248 Aldo/keto reductase family APS58_3984 PF02417 Chromate transporter APS58_3985 PF00512 His Kinase A (phospho-acceptor) domain APS58_3985 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APS58_3985 PF08521 Two-component sensor kinase N-terminal APS58_3986 PF00072 Response regulator receiver domain APS58_3986 PF00486 Transcriptional regulatory protein, C terminal APS58_3987 PF03401 Tripartite tricarboxylate transporter family receptor APS58_3989 PF01970 Tripartite tricarboxylate transporter TctA family APS58_3991 PF00593 TonB dependent receptor APS58_3991 PF07715 TonB-dependent Receptor Plug Domain APS58_3993 PF10605 3HB-oligomer hydrolase (3HBOH) APS58_3996 PF00072 Response regulator receiver domain APS58_3996 PF00486 Transcriptional regulatory protein, C terminal APS58_3997 PF16736 Single Cache-like APS58_3997 PF00989 PAS fold APS58_3997 PF00512 His Kinase A (phospho-acceptor) domain APS58_3997 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APS58_3998 PF00762 Ferrochelatase APS58_3999 PF13419 Haloacid dehalogenase-like hydrolase APS58_4001 PF01053 Cys/Met metabolism PLP-dependent enzyme APS58_4002 PF00571 CBS domain APS58_4002 PF00005 ABC transporter APS58_4003 PF01264 Chorismate synthase APS58_4005 PF03477 ATP cone domain APS58_4006 PF00464 Serine hydroxymethyltransferase APS58_4007 PF11873 Membrane-bound lytic murein transglycosylase C, N-terminal domain APS58_4007 PF01464 Transglycosylase SLT domain APS58_4012 PF08206 Ribonuclease B OB domain APS58_4012 PF00575 S1 RNA binding domain APS58_4012 PF08461 Ribonuclease R winged-helix domain APS58_4012 PF00773 RNB domain APS58_4012 PF17876 Cold shock domain APS58_4015 PF00534 Glycosyl transferases group 1 APS58_4015 PF08323 Starch synthase catalytic domain APS58_4016 PF00128 Alpha amylase, catalytic domain APS58_4017 PF11941 Domain of unknown function (DUF3459) APS58_4017 PF00128 Alpha amylase, catalytic domain APS58_4018 PF00128 Alpha amylase, catalytic domain APS58_4018 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) APS58_4019 PF00483 Nucleotidyl transferase APS58_4021 PF01590 GAF domain APS58_4021 PF00360 Phytochrome region APS58_4021 PF08446 PAS fold APS58_4021 PF00512 His Kinase A (phospho-acceptor) domain APS58_4021 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APS58_4023 PF13426 PAS domain APS58_4023 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APS58_4023 PF00072 Response regulator receiver domain APS58_4024 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APS58_4024 PF00512 His Kinase A (phospho-acceptor) domain APS58_4025 PF00512 His Kinase A (phospho-acceptor) domain APS58_4025 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APS58_4027 PF13581 Histidine kinase-like ATPase domain APS58_4028 PF01740 STAS domain APS58_4029 PF01740 STAS domain APS58_4029 PF08678 Rsbr N terminal APS58_4031 PF00528 Binding-protein-dependent transport system inner membrane component APS58_4032 PF00005 ABC transporter APS58_4033 PF00392 Bacterial regulatory proteins, gntR family APS58_4033 PF07702 UTRA domain APS58_4034 PF00221 Aromatic amino acid lyase APS58_4035 PF17392 Urocanase C-terminal domain APS58_4035 PF01175 Urocanase Rossmann-like domain APS58_4035 PF17391 Urocanase N-terminal domain APS58_4038 PF01979 Amidohydrolase family APS58_4041 PF00892 EamA-like transporter family APS58_4042 PF12951 Passenger-associated-transport-repeat APS58_4044 PF02666 Phosphatidylserine decarboxylase APS58_4045 PF01176 Translation initiation factor 1A / IF-1 APS58_4051 PF04279 Intracellular septation protein A APS58_4052 PF01641 SelR domain APS58_4053 PF02696 Uncharacterized ACR, YdiU/UPF0061 family APS58_4054 PF13193 AMP-binding enzyme C-terminal domain APS58_4054 PF00501 AMP-binding enzyme APS58_4056 PF02653 Branched-chain amino acid transport system / permease component APS58_4058 PF12399 Branched-chain amino acid ATP-binding cassette transporter APS58_4058 PF00005 ABC transporter APS58_4059 PF00005 ABC transporter APS58_4063 PF00990 Diguanylate cyclase, GGDEF domain APS58_4064 PF03707 Bacterial signalling protein N terminal repeat APS58_4064 PF00563 EAL domain APS58_4064 PF00990 Diguanylate cyclase, GGDEF domain APS58_4066 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain APS58_4066 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain APS58_4066 PF00378 Enoyl-CoA hydratase/isomerase APS58_4067 PF00108 Thiolase, N-terminal domain APS58_4067 PF02803 Thiolase, C-terminal domain APS58_4068 PF03061 Thioesterase superfamily APS58_4069 PF00441 Acyl-CoA dehydrogenase, C-terminal domain APS58_4069 PF12806 Acetyl-CoA dehydrogenase C-terminal like APS58_4069 PF02770 Acyl-CoA dehydrogenase, middle domain APS58_4069 PF02771 Acyl-CoA dehydrogenase, N-terminal domain APS58_4073 PF16884 N-terminal domain of oxidoreductase APS58_4073 PF00107 Zinc-binding dehydrogenase APS58_4074 PF13673 Acetyltransferase (GNAT) domain APS58_4076 PF00106 short chain dehydrogenase APS58_4077 PF00106 short chain dehydrogenase APS58_4078 PF13416 Bacterial extracellular solute-binding protein APS58_4080 PF00892 EamA-like transporter family APS58_4081 PF01037 Lrp/AsnC ligand binding domain APS58_4084 PF00463 Isocitrate lyase family APS58_4085 PF03129 Anticodon binding domain APS58_4085 PF02824 TGS domain APS58_4085 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) APS58_4085 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain APS58_4086 PF00707 Translation initiation factor IF-3, C-terminal domain APS58_4086 PF05198 Translation initiation factor IF-3, N-terminal domain APS58_4087 PF01632 Ribosomal protein L35 APS58_4088 PF00453 Ribosomal protein L20 APS58_4089 PF01409 tRNA synthetases class II core domain (F) APS58_4089 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain APS58_4091 PF00216 Bacterial DNA-binding protein APS58_4092 PF13411 MerR HTH family regulatory protein APS58_4096 PF14602 Hexapeptide repeat of succinyl-transferase APS58_4096 PF12464 Maltose acetyltransferase APS58_4097 PF00005 ABC transporter APS58_4097 PF00664 ABC transporter transmembrane region APS58_4098 PF02040 Arsenical pump membrane protein APS58_4099 PF00990 Diguanylate cyclase, GGDEF domain APS58_4099 PF03707 Bacterial signalling protein N terminal repeat APS58_4099 PF00563 EAL domain APS58_4100 PF02694 Uncharacterised BCR, YnfA/UPF0060 family APS58_4102 PF02463 RecF/RecN/SMC N terminal domain APS58_4102 PF06470 SMC proteins Flexible Hinge Domain APS58_4104 PF12826 Helix-hairpin-helix motif APS58_4104 PF00533 BRCA1 C Terminus (BRCT) domain APS58_4104 PF03120 NAD-dependent DNA ligase OB-fold domain APS58_4104 PF03119 NAD-dependent DNA ligase C4 zinc finger domain APS58_4104 PF01653 NAD-dependent DNA ligase adenylation domain APS58_4106 PF12794 Mechanosensitive ion channel inner membrane domain 1 APS58_4106 PF12795 Mechanosensitive ion channel porin domain APS58_4106 PF00924 Mechanosensitive ion channel APS58_4107 PF01012 Electron transfer flavoprotein domain APS58_4108 PF01012 Electron transfer flavoprotein domain APS58_4108 PF00766 Electron transfer flavoprotein FAD-binding domain APS58_4109 PF02770 Acyl-CoA dehydrogenase, middle domain APS58_4109 PF00441 Acyl-CoA dehydrogenase, C-terminal domain APS58_4109 PF12806 Acetyl-CoA dehydrogenase C-terminal like APS58_4109 PF02771 Acyl-CoA dehydrogenase, N-terminal domain APS58_4115 PF04055 Radical SAM superfamily APS58_4119 PF01037 Lrp/AsnC ligand binding domain APS58_4120 PF00202 Aminotransferase class-III APS58_4121 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain APS58_4125 PF01266 FAD dependent oxidoreductase APS58_4127 PF00528 Binding-protein-dependent transport system inner membrane component APS58_4128 PF00528 Binding-protein-dependent transport system inner membrane component APS58_4128 PF12911 N-terminal TM domain of oligopeptide transport permease C APS58_4129 PF08352 Oligopeptide/dipeptide transporter, C-terminal region APS58_4129 PF00005 ABC transporter APS58_4130 PF00180 Isocitrate/isopropylmalate dehydrogenase APS58_4131 PF00171 Aldehyde dehydrogenase family APS58_4132 PF08019 Phosphoethanolamine transferase EptA/EptB APS58_4132 PF00884 Sulfatase APS58_4133 PF00756 Putative esterase APS58_4134 PF08240 Alcohol dehydrogenase GroES-like domain APS58_4134 PF00107 Zinc-binding dehydrogenase APS58_4135 PF12833 Helix-turn-helix domain APS58_4135 PF01965 DJ-1/PfpI family APS58_4136 PF13302 Acetyltransferase (GNAT) domain APS58_4139 PF00285 Citrate synthase, C-terminal domain APS58_4140 PF03937 Flavinator of succinate dehydrogenase APS58_4141 PF13085 2Fe-2S iron-sulfur cluster binding domain APS58_4142 PF02910 Fumarate reductase flavoprotein C-term APS58_4142 PF00890 FAD binding domain APS58_4145 PF00392 Bacterial regulatory proteins, gntR family APS58_4145 PF07702 UTRA domain APS58_4146 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain APS58_4146 PF00056 lactate/malate dehydrogenase, NAD binding domain APS58_4147 PF13649 Methyltransferase domain APS58_4151 PF00330 Aconitase family (aconitate hydratase) APS58_4151 PF06434 Aconitate hydratase 2 N-terminus APS58_4151 PF11791 Aconitate B N-terminal domain APS58_4152 PF05992 SbmA/BacA-like family APS58_4156 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family APS58_4156 PF03466 LysR substrate binding domain APS58_4158 PF00072 Response regulator receiver domain APS58_4159 PF00989 PAS fold APS58_4159 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APS58_4161 PF03626 Prokaryotic Cytochrome C oxidase subunit IV APS58_4162 PF00510 Cytochrome c oxidase subunit III APS58_4163 PF00115 Cytochrome C and Quinol oxidase polypeptide I APS58_4164 PF00116 Cytochrome C oxidase subunit II, periplasmic domain APS58_4164 PF06481 COX Aromatic Rich Motif APS58_4165 PF00083 Sugar (and other) transporter APS58_4165 PF07690 Major Facilitator Superfamily APS58_4167 PF02472 Biopolymer transport protein ExbD/TolR APS58_4168 PF01618 MotA/TolQ/ExbB proton channel family APS58_4169 PF03061 Thioesterase superfamily APS58_4170 PF00155 Aminotransferase class I and II APS58_4171 PF01029 NusB family APS58_4172 PF00885 6,7-dimethyl-8-ribityllumazine synthase APS58_4173 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase APS58_4173 PF00925 GTP cyclohydrolase II APS58_4177 PF00512 His Kinase A (phospho-acceptor) domain APS58_4177 PF00989 PAS fold APS58_4177 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APS58_4179 PF00072 Response regulator receiver domain APS58_4179 PF00486 Transcriptional regulatory protein, C terminal APS58_4180 PF00072 Response regulator receiver domain APS58_4180 PF01339 CheB methylesterase APS58_4182 PF00672 HAMP domain APS58_4182 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain APS58_4182 PF02203 Tar ligand binding domain homologue APS58_4185 PF13378 Enolase C-terminal domain-like APS58_4185 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain APS58_4186 PF01081 KDPG and KHG aldolase APS58_4187 PF05035 2-keto-3-deoxy-galactonokinase APS58_4188 PF00701 Dihydrodipicolinate synthetase family APS58_4189 PF00920 Dehydratase family APS58_4190 PF02653 Branched-chain amino acid transport system / permease component APS58_4191 PF02653 Branched-chain amino acid transport system / permease component APS58_4192 PF00005 ABC transporter APS58_4193 PF02653 Branched-chain amino acid transport system / permease component APS58_4194 PF00005 ABC transporter APS58_4195 PF13407 Periplasmic binding protein domain APS58_4196 PF13407 Periplasmic binding protein domain APS58_4197 PF00171 Aldehyde dehydrogenase family APS58_4198 PF03466 LysR substrate binding domain APS58_4198 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family APS58_4200 PF08450 SMP-30/Gluconolactonase/LRE-like region APS58_4203 PF04262 Glutamate-cysteine ligase APS58_4204 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain APS58_4204 PF00205 Thiamine pyrophosphate enzyme, central domain APS58_4204 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain APS58_4205 PF02463 RecF/RecN/SMC N terminal domain APS58_4207 PF01810 LysE type translocator APS58_4208 PF00512 His Kinase A (phospho-acceptor) domain APS58_4208 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APS58_4211 PF01926 50S ribosome-binding GTPase APS58_4212 PF13609 Gram-negative porin APS58_4215 PF07690 Major Facilitator Superfamily APS58_4217 PF09278 MerR, DNA binding APS58_4217 PF00376 MerR family regulatory protein APS58_4218 PF02308 MgtC family APS58_4219 PF00849 RNA pseudouridylate synthase APS58_4225 PF01547 Bacterial extracellular solute-binding protein APS58_4226 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain APS58_4226 PF02203 Tar ligand binding domain homologue APS58_4226 PF00672 HAMP domain APS58_4230 PF00849 RNA pseudouridylate synthase APS58_4232 PF13396 Phospholipase_D-nuclease N-terminal APS58_4232 PF13091 PLD-like domain APS58_4239 PF00440 Bacterial regulatory proteins, tetR family APS58_4239 PF17932 Tetracyclin repressor-like, C-terminal domain APS58_4243 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain APS58_4243 PF00749 tRNA synthetases class I (E and Q), catalytic domain APS58_4245 PF01220 Dehydroquinase class II APS58_4247 PF00472 RF-1 domain APS58_4248 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase APS58_4252 PF01037 Lrp/AsnC ligand binding domain APS58_4253 PF00456 Transketolase, thiamine diphosphate binding domain APS58_4253 PF17831 Pyruvate dehydrogenase E1 component middle domain APS58_4255 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family APS58_4255 PF03466 LysR substrate binding domain APS58_4256 PF03401 Tripartite tricarboxylate transporter family receptor APS58_4258 PF06167 Glucose-regulated metallo-peptidase M90 APS58_4259 PF00149 Calcineurin-like phosphoesterase APS58_4260 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD APS58_4261 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD APS58_4264 PF09190 DALR domain APS58_4264 PF01406 tRNA synthetases class I (C) catalytic domain APS58_4265 PF06029 AlkA N-terminal domain APS58_4265 PF00730 HhH-GPD superfamily base excision DNA repair protein APS58_4265 PF02805 Metal binding domain of Ada APS58_4265 PF12833 Helix-turn-helix domain APS58_4266 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit APS58_4267 PF09179 TilS substrate binding domain APS58_4267 PF01171 PP-loop family APS58_4268 PF13840 ACT domain APS58_4268 PF01842 ACT domain APS58_4268 PF00696 Amino acid kinase family APS58_4275 PF10668 Phage terminase small subunit APS58_4275 PF03592 Terminase small subunit APS58_4278 PF04717 Type VI secretion system, phage-baseplate injector APS58_4280 PF03527 RHS protein APS58_4280 PF05593 RHS Repeat APS58_4286 PF00271 Helicase conserved C-terminal domain APS58_4286 PF04434 SWIM zinc finger APS58_4286 PF00176 SNF2 family N-terminal domain APS58_4289 PF00877 NlpC/P60 family APS58_4290 PF07995 Glucose / Sorbosone dehydrogenase APS58_4292 PF13193 AMP-binding enzyme C-terminal domain APS58_4292 PF00501 AMP-binding enzyme APS58_4292 PF16177 Acetyl-coenzyme A synthetase N-terminus APS58_4293 PF00990 Diguanylate cyclase, GGDEF domain APS58_4293 PF00563 EAL domain APS58_4293 PF03707 Bacterial signalling protein N terminal repeat APS58_4295 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain APS58_4295 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain APS58_4296 PF00730 HhH-GPD superfamily base excision DNA repair protein APS58_4296 PF02805 Metal binding domain of Ada APS58_4296 PF06029 AlkA N-terminal domain APS58_4296 PF12833 Helix-turn-helix domain APS58_4297 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain APS58_4297 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II APS58_4297 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III APS58_4297 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I APS58_4299 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) APS58_4299 PF00534 Glycosyl transferases group 1 APS58_4300 PF13607 Succinyl-CoA ligase like flavodoxin domain APS58_4300 PF00583 Acetyltransferase (GNAT) family APS58_4300 PF13380 CoA binding domain APS58_4301 PF02321 Outer membrane efflux protein APS58_4304 PF00440 Bacterial regulatory proteins, tetR family APS58_4304 PF17922 Tetracyclin repressor-like, C-terminal domain APS58_4305 PF01625 Peptide methionine sulfoxide reductase APS58_4307 PF00005 ABC transporter APS58_4312 PF07715 TonB-dependent Receptor Plug Domain APS58_4312 PF00593 TonB dependent receptor APS58_4313 PF01266 FAD dependent oxidoreductase APS58_4314 PF00171 Aldehyde dehydrogenase family APS58_4316 PF01243 Pyridoxamine 5'-phosphate oxidase APS58_4316 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region APS58_4321 PF00356 Bacterial regulatory proteins, lacI family APS58_4323 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component APS58_4324 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component APS58_4325 PF03480 Bacterial extracellular solute-binding protein, family 7 APS58_4326 PF00920 Dehydratase family APS58_4327 PF01081 KDPG and KHG aldolase APS58_4329 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily APS58_4333 PF00106 short chain dehydrogenase APS58_4338 PF00005 ABC transporter APS58_4340 PF03466 LysR substrate binding domain APS58_4340 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family APS58_4341 PF03358 NADPH-dependent FMN reductase APS58_4344 PF08267 Cobalamin-independent synthase, N-terminal domain APS58_4344 PF01717 Cobalamin-independent synthase, Catalytic domain APS58_4349 PF00849 RNA pseudouridylate synthase APS58_4350 PF05170 AsmA family APS58_4351 PF02811 PHP domain APS58_4351 PF14579 Helix-hairpin-helix motif APS58_4351 PF17657 Bacterial DNA polymerase III alpha subunit finger domain APS58_4351 PF07733 Bacterial DNA polymerase III alpha NTPase domain APS58_4354 PF00719 Inorganic pyrophosphatase APS58_4355 PF03030 Inorganic H+ pyrophosphatase APS58_4359 PF00171 Aldehyde dehydrogenase family APS58_4360 PF02535 ZIP Zinc transporter APS58_4361 PF02777 Iron/manganese superoxide dismutases, C-terminal domain APS58_4361 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain APS58_4364 PF04055 Radical SAM superfamily APS58_4364 PF06463 Molybdenum Cofactor Synthesis C APS58_4365 PF12804 MobA-like NTP transferase domain APS58_4367 PF00994 Probable molybdopterin binding domain APS58_4367 PF03454 MoeA C-terminal region (domain IV) APS58_4367 PF03453 MoeA N-terminal region (domain I and II) APS58_4370 PF00075 RNase H APS58_4371 PF08241 Methyltransferase domain APS58_4372 PF00753 Metallo-beta-lactamase superfamily APS58_4372 PF16123 Hydroxyacylglutathione hydrolase C-terminus APS58_4373 PF01476 LysM domain APS58_4373 PF01464 Transglycosylase SLT domain APS58_4377 PF13662 Toprim domain APS58_4377 PF02132 RecR protein APS58_4378 PF02575 YbaB/EbfC DNA-binding family APS58_4379 PF12168 DNA polymerase III subunits tau domain IV DnaB-binding APS58_4379 PF12169 DNA polymerase III subunits gamma and tau domain III APS58_4379 PF12170 DNA polymerase III tau subunit V interacting with alpha APS58_4380 PF17200 Single Cache domain 2 APS58_4380 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain APS58_4380 PF00672 HAMP domain APS58_4382 PF13361 UvrD-like helicase C-terminal domain APS58_4382 PF00580 UvrD/REP helicase N-terminal domain APS58_4382 PF12705 PD-(D/E)XK nuclease superfamily APS58_4384 PF00085 Thioredoxin APS58_4385 PF07497 Rho termination factor, RNA-binding domain APS58_4385 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain APS58_4385 PF07498 Rho termination factor, N-terminal domain APS58_4386 PF13476 AAA domain APS58_4387 PF12320 Type 5 capsule protein repressor C-terminal domain APS58_4387 PF00149 Calcineurin-like phosphoesterase APS58_4388 PF01197 Ribosomal protein L31 APS58_4390 PF01554 MatE APS58_4391 PF00989 PAS fold APS58_4391 PF00512 His Kinase A (phospho-acceptor) domain APS58_4391 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APS58_4391 PF11808 Phosphate regulon sensor protein PhoR APS58_4392 PF00072 Response regulator receiver domain APS58_4392 PF00486 Transcriptional regulatory protein, C terminal APS58_4393 PF01895 PhoU domain APS58_4394 PF00005 ABC transporter APS58_4395 PF00528 Binding-protein-dependent transport system inner membrane component APS58_4396 PF00528 Binding-protein-dependent transport system inner membrane component APS58_4397 PF12849 PBP superfamily domain APS58_4398 PF02541 Ppx/GppA phosphatase family APS58_4400 PF00300 Histidine phosphatase superfamily (branch 1) APS58_4401 PF02503 Polyphosphate kinase middle domain APS58_4401 PF13090 Polyphosphate kinase C-terminal domain 2 APS58_4401 PF17941 Polyphosphate kinase C-terminal domain 1 APS58_4401 PF13089 Polyphosphate kinase N-terminal domain APS58_4403 PF00990 Diguanylate cyclase, GGDEF domain APS58_4403 PF00563 EAL domain APS58_4403 PF03707 Bacterial signalling protein N terminal repeat APS58_4404 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain APS58_4404 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III APS58_4404 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II APS58_4404 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I APS58_4405 PF00809 Pterin binding enzyme APS58_4406 PF01434 Peptidase family M41 APS58_4406 PF17862 AAA+ lid domain APS58_4406 PF06480 FtsH Extracellular APS58_4406 PF00004 ATPase family associated with various cellular activities (AAA) APS58_4407 PF01728 FtsJ-like methyltransferase APS58_4408 PF01985 CRS1 / YhbY (CRM) domain APS58_4411 PF01272 Transcription elongation factor, GreA/GreB, C-term APS58_4411 PF03449 Transcription elongation factor, N-terminal APS58_4412 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain APS58_4412 PF02142 MGS-like domain APS58_4412 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain APS58_4413 PF00117 Glutamine amidotransferase class-I APS58_4413 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain APS58_4415 PF00324 Amino acid permease APS58_4418 PF00171 Aldehyde dehydrogenase family APS58_4420 PF02771 Acyl-CoA dehydrogenase, N-terminal domain APS58_4420 PF02770 Acyl-CoA dehydrogenase, middle domain APS58_4420 PF00441 Acyl-CoA dehydrogenase, C-terminal domain APS58_4422 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase APS58_4422 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase APS58_4423 PF00080 Copper/zinc superoxide dismutase (SODC) APS58_4424 PF00593 TonB dependent receptor APS58_4424 PF07715 TonB-dependent Receptor Plug Domain APS58_4425 PF03401 Tripartite tricarboxylate transporter family receptor APS58_4427 PF08666 SAF domain APS58_4427 PF04295 D-galactarate dehydratase / Altronate hydrolase, C terminus APS58_4428 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component APS58_4430 PF03480 Bacterial extracellular solute-binding protein, family 7 APS58_4432 PF01370 NAD dependent epimerase/dehydratase family APS58_4434 PF03401 Tripartite tricarboxylate transporter family receptor APS58_4435 PF00701 Dihydrodipicolinate synthetase family APS58_4439 PF00082 Subtilase family APS58_4443 PF00376 MerR family regulatory protein APS58_4443 PF09278 MerR, DNA binding APS58_4444 PF07690 Major Facilitator Superfamily APS58_4447 PF01361 Tautomerase enzyme APS58_4448 PF02798 Glutathione S-transferase, N-terminal domain APS58_4448 PF00043 Glutathione S-transferase, C-terminal domain APS58_4449 PF03466 LysR substrate binding domain APS58_4449 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family APS58_4450 PF00180 Isocitrate/isopropylmalate dehydrogenase APS58_4454 PF02777 Iron/manganese superoxide dismutases, C-terminal domain APS58_4454 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain APS58_4455 PF02601 Exonuclease VII, large subunit APS58_4455 PF13742 OB-fold nucleic acid binding domain APS58_4456 PF01618 MotA/TolQ/ExbB proton channel family APS58_4457 PF02472 Biopolymer transport protein ExbD/TolR APS58_4458 PF02606 Tetraacyldisaccharide-1-P 4'-kinase APS58_4459 PF03966 Trm112p-like protein APS58_4460 PF02348 Cytidylyltransferase APS58_4461 PF05191 Adenylate kinase, active site lid APS58_p00001 PF03135 CagE, TrbE, VirB family, component of type IV transporter system APS58_p00005 PF04335 VirB8 protein APS58_p00006 PF03524 Conjugal transfer protein APS58_p00007 PF03743 Bacterial conjugation TrbI-like protein APS58_p00008 PF00437 Type II/IV secretion system protein APS58_p00009 PF02534 Type IV secretory system Conjugative DNA transfer APS58_p00010 PF00691 OmpA family APS58_p00031 PF06067 Domain of unknown function (DUF932) APS58_p00050 PF02195 ParB-like nuclease domain APS58_p00050 PF17762 HTH domain found in ParB protein APS58_p00051 PF13614 AAA domain APS58_p00052 PF17841 BID domain of Bartonella effector protein (Bep) APS58_p00052 PF02661 Fic/DOC family APS58_p00056 PF00717 Peptidase S24-like APS58_p00057 PF00817 impB/mucB/samB family APS58_p00057 PF11799 impB/mucB/samB family C-terminal domain APS58_p00057 PF13438 Domain of unknown function (DUF4113) APS58_p00061 PF01464 Transglycosylase SLT domain APS58_p00063 PF05101 Type IV secretory pathway, VirB3-like protein