locus-tag class description KI609_00005 PF00308 Bacterial dnaA protein KI609_00005 PF08299 Bacterial dnaA protein helix-turn-helix KI609_00005 PF11638 DnaA N-terminal domain KI609_00010 PF00712 DNA polymerase III beta subunit, N-terminal domain KI609_00010 PF02767 DNA polymerase III beta subunit, central domain KI609_00010 PF02768 DNA polymerase III beta subunit, C-terminal domain KI609_00015 PF00204 DNA gyrase B KI609_00015 PF00986 DNA gyrase B subunit, carboxyl terminus KI609_00015 PF18053 DNA gyrase B subunit insert domain KI609_00015 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KI609_00015 PF01751 Toprim domain KI609_00115 PF04143 Sulphur transport KI609_00120 PF01206 Sulfurtransferase TusA KI609_00125 PF00654 Voltage gated chloride channel KI609_00135 PF00708 Acylphosphatase KI609_00145 PF02566 OsmC-like protein KI609_00150 PF01842 ACT domain KI609_00150 PF00742 Homoserine dehydrogenase KI609_00150 PF03447 Homoserine dehydrogenase, NAD binding domain KI609_00165 PF00155 Aminotransferase class I and II KI609_00165 PF00392 Bacterial regulatory proteins, gntR family KI609_00170 PF12706 Beta-lactamase superfamily domain KI609_00180 PF00132 Bacterial transferase hexapeptide (six repeats) KI609_00200 PF13307 Helicase C-terminal domain KI609_00200 PF06733 DEAD_2 KI609_00205 PF08274 PhnA Zinc-Ribbon KI609_00205 PF03831 PhnA domain KI609_00225 PF13404 AsnC-type helix-turn-helix domain KI609_00225 PF01037 Lrp/AsnC ligand binding domain KI609_00230 PF01053 Cys/Met metabolism PLP-dependent enzyme KI609_00235 PF03401 Tripartite tricarboxylate transporter family receptor KI609_00240 PF13454 FAD-NAD(P)-binding KI609_00250 PF01597 Glycine cleavage H-protein KI609_00255 PF13307 Helicase C-terminal domain KI609_00255 PF00929 Exonuclease KI609_00255 PF04851 Type III restriction enzyme, res subunit KI609_00275 PF08281 Sigma-70, region 4 KI609_00275 PF04542 Sigma-70 region 2 KI609_00295 PF03795 YCII-related domain KI609_00300 PF00682 HMGL-like KI609_00300 PF08502 LeuA allosteric (dimerisation) domain KI609_00305 PF00877 NlpC/P60 family KI609_00310 PF00793 DAHP synthetase I family KI609_00315 PF00563 EAL domain KI609_00315 PF00990 Diguanylate cyclase, GGDEF domain KI609_00315 PF03707 Bacterial signalling protein N terminal repeat KI609_00325 PF01609 Transposase DDE domain KI609_00325 PF05598 Transposase domain (DUF772) KI609_00330 PF04381 Putative exonuclease, RdgC KI609_00340 PF00376 MerR family regulatory protein KI609_00340 PF09278 MerR, DNA binding KI609_00350 PF00403 Heavy-metal-associated domain KI609_00355 PF02203 Tar ligand binding domain homologue KI609_00355 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain KI609_00355 PF00672 HAMP domain KI609_00365 PF00724 NADH:flavin oxidoreductase / NADH oxidase family KI609_00370 PF00043 Glutathione S-transferase, C-terminal domain KI609_00370 PF02798 Glutathione S-transferase, N-terminal domain KI609_00375 PF00596 Class II Aldolase and Adducin N-terminal domain KI609_00380 PF03692 Putative zinc- or iron-chelating domain KI609_00390 PF01134 Glucose inhibited division protein A KI609_00390 PF13932 GidA associated domain KI609_00395 PF02527 rRNA small subunit methyltransferase G KI609_00400 PF01810 LysE type translocator KI609_00405 PF13614 AAA domain KI609_00420 PF17762 HTH domain found in ParB protein KI609_00420 PF02195 ParB-like nuclease domain KI609_00485 PF03971 Monomeric isocitrate dehydrogenase KI609_00490 PF09827 CRISPR associated protein Cas2 KI609_00495 PF01867 CRISPR associated protein Cas1 KI609_00500 PF13395 HNH endonuclease KI609_00500 PF18541 RuvC endonuclease subdomain 3 KI609_00505 PF02913 FAD linked oxidases, C-terminal domain KI609_00505 PF01565 FAD binding domain KI609_00525 PF00528 Binding-protein-dependent transport system inner membrane component KI609_00530 PF00528 Binding-protein-dependent transport system inner membrane component KI609_00535 PF00005 ABC transporter KI609_00545 PF01923 Cobalamin adenosyltransferase KI609_00550 PF03061 Thioesterase superfamily KI609_00560 PF02550 Acetyl-CoA hydrolase/transferase N-terminal domain KI609_00560 PF13336 Acetyl-CoA hydrolase/transferase C-terminal domain KI609_00565 PF00860 Permease family KI609_00580 PF01494 FAD binding domain KI609_00590 PF13193 AMP-binding enzyme C-terminal domain KI609_00590 PF00501 AMP-binding enzyme KI609_00595 PF00990 Diguanylate cyclase, GGDEF domain KI609_00600 PF03466 LysR substrate binding domain KI609_00600 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KI609_00605 PF03401 Tripartite tricarboxylate transporter family receptor KI609_00610 PF02515 CoA-transferase family III KI609_00615 PF00441 Acyl-CoA dehydrogenase, C-terminal domain KI609_00615 PF02770 Acyl-CoA dehydrogenase, middle domain KI609_00615 PF02771 Acyl-CoA dehydrogenase, N-terminal domain KI609_00620 PF02771 Acyl-CoA dehydrogenase, N-terminal domain KI609_00620 PF02770 Acyl-CoA dehydrogenase, middle domain KI609_00620 PF00441 Acyl-CoA dehydrogenase, C-terminal domain KI609_00625 PF00378 Enoyl-CoA hydratase/isomerase KI609_00630 PF02515 CoA-transferase family III KI609_00640 PF03401 Tripartite tricarboxylate transporter family receptor KI609_00650 PF01066 CDP-alcohol phosphatidyltransferase KI609_00665 PF03775 Septum formation inhibitor MinC, C-terminal domain KI609_00665 PF05209 Septum formation inhibitor MinC, N-terminal domain KI609_00670 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain KI609_00675 PF03776 Septum formation topological specificity factor MinE KI609_00685 PF12805 FUSC-like inner membrane protein yccS KI609_00695 PF01613 Flavin reductase like domain KI609_00705 PF02698 DUF218 domain KI609_00710 PF02525 Flavodoxin-like fold KI609_00715 PF01266 FAD dependent oxidoreductase KI609_00720 PF03466 LysR substrate binding domain KI609_00720 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KI609_00745 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KI609_00745 PF03466 LysR substrate binding domain KI609_00755 PF00821 Phosphoenolpyruvate carboxykinase C-terminal P-loop domain KI609_00755 PF17297 Phosphoenolpyruvate carboxykinase N-terminal domain KI609_00760 PF06508 Queuosine biosynthesis protein QueC KI609_00770 PF13291 ACT domain KI609_00770 PF00291 Pyridoxal-phosphate dependent enzyme KI609_00775 PF02954 Bacterial regulatory protein, Fis family KI609_00775 PF00158 Sigma-54 interaction domain KI609_00780 PF00115 Cytochrome C and Quinol oxidase polypeptide I KI609_00810 PF00270 DEAD/DEAH box helicase KI609_00810 PF00570 HRDC domain KI609_00810 PF00271 Helicase conserved C-terminal domain KI609_00810 PF09382 RQC domain KI609_00810 PF16124 RecQ zinc-binding KI609_00815 PF02515 CoA-transferase family III KI609_00820 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KI609_00820 PF03466 LysR substrate binding domain KI609_00830 PF00441 Acyl-CoA dehydrogenase, C-terminal domain KI609_00830 PF02770 Acyl-CoA dehydrogenase, middle domain KI609_00830 PF02771 Acyl-CoA dehydrogenase, N-terminal domain KI609_00835 PF02803 Thiolase, C-terminal domain KI609_00835 PF00108 Thiolase, N-terminal domain KI609_00845 PF01810 LysE type translocator KI609_00850 PF12833 Helix-turn-helix domain KI609_00850 PF12852 Cupin KI609_00860 PF03401 Tripartite tricarboxylate transporter family receptor KI609_00865 PF00501 AMP-binding enzyme KI609_00865 PF13193 AMP-binding enzyme C-terminal domain KI609_00870 PF03401 Tripartite tricarboxylate transporter family receptor KI609_00875 PF00108 Thiolase, N-terminal domain KI609_00875 PF02803 Thiolase, C-terminal domain KI609_00880 PF02550 Acetyl-CoA hydrolase/transferase N-terminal domain KI609_00880 PF13336 Acetyl-CoA hydrolase/transferase C-terminal domain KI609_00885 PF00378 Enoyl-CoA hydratase/isomerase KI609_00890 PF01575 MaoC like domain KI609_00895 PF00106 short chain dehydrogenase KI609_00905 PF02771 Acyl-CoA dehydrogenase, N-terminal domain KI609_00905 PF00441 Acyl-CoA dehydrogenase, C-terminal domain KI609_00905 PF02770 Acyl-CoA dehydrogenase, middle domain KI609_00910 PF02515 CoA-transferase family III KI609_00930 PF02515 CoA-transferase family III KI609_00935 PF09339 IclR helix-turn-helix domain KI609_00940 PF00378 Enoyl-CoA hydratase/isomerase KI609_00950 PF03401 Tripartite tricarboxylate transporter family receptor KI609_00955 PF00378 Enoyl-CoA hydratase/isomerase KI609_00960 PF00106 short chain dehydrogenase KI609_00965 PF02803 Thiolase, C-terminal domain KI609_00965 PF00108 Thiolase, N-terminal domain KI609_00970 PF13193 AMP-binding enzyme C-terminal domain KI609_00970 PF00501 AMP-binding enzyme KI609_00975 PF02770 Acyl-CoA dehydrogenase, middle domain KI609_00975 PF02771 Acyl-CoA dehydrogenase, N-terminal domain KI609_00975 PF00441 Acyl-CoA dehydrogenase, C-terminal domain KI609_00980 PF03401 Tripartite tricarboxylate transporter family receptor KI609_00985 PF03401 Tripartite tricarboxylate transporter family receptor KI609_00995 PF03401 Tripartite tricarboxylate transporter family receptor KI609_01000 PF00501 AMP-binding enzyme KI609_01000 PF13193 AMP-binding enzyme C-terminal domain KI609_01005 PF02310 B12 binding domain KI609_01005 PF02607 B12 binding domain KI609_01005 PF02965 Vitamin B12 dependent methionine synthase, activation domain KI609_01005 PF00809 Pterin binding enzyme KI609_01005 PF02574 Homocysteine S-methyltransferase KI609_01010 PF01171 PP-loop family KI609_01015 PF01136 Peptidase family U32 KI609_01015 PF16325 Peptidase family U32 C-terminal domain KI609_01030 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase KI609_01030 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain KI609_01045 PF03976 Polyphosphate kinase 2 (PPK2) KI609_01050 PF07715 TonB-dependent Receptor Plug Domain KI609_01050 PF00593 TonB dependent receptor KI609_01065 PF13746 4Fe-4S dicluster domain KI609_01065 PF12801 4Fe-4S binding domain KI609_01065 PF11614 IG-like fold at C-terminal of FixG, putative oxidoreductase KI609_01070 PF00355 Rieske [2Fe-2S] domain KI609_01070 PF10399 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal KI609_01075 PF00072 Response regulator receiver domain KI609_01075 PF02954 Bacterial regulatory protein, Fis family KI609_01075 PF00158 Sigma-54 interaction domain KI609_01080 PF00809 Pterin binding enzyme KI609_01080 PF02965 Vitamin B12 dependent methionine synthase, activation domain KI609_01080 PF02607 B12 binding domain KI609_01080 PF02310 B12 binding domain KI609_01080 PF02574 Homocysteine S-methyltransferase KI609_01085 PF01042 Endoribonuclease L-PSP KI609_01090 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KI609_01090 PF03466 LysR substrate binding domain KI609_01095 PF00990 Diguanylate cyclase, GGDEF domain KI609_01100 PF01202 Shikimate kinase KI609_01110 PF00501 AMP-binding enzyme KI609_01110 PF13193 AMP-binding enzyme C-terminal domain KI609_01115 PF02771 Acyl-CoA dehydrogenase, N-terminal domain KI609_01115 PF00441 Acyl-CoA dehydrogenase, C-terminal domain KI609_01115 PF02770 Acyl-CoA dehydrogenase, middle domain KI609_01125 PF03631 Virulence factor BrkB KI609_01135 PF01979 Amidohydrolase family KI609_01140 PF00440 Bacterial regulatory proteins, tetR family KI609_01140 PF17938 Tetracyclin repressor-like, C-terminal domain KI609_01145 PF00970 Oxidoreductase FAD-binding domain KI609_01145 PF00175 Oxidoreductase NAD-binding domain KI609_01150 PF00037 4Fe-4S binding domain KI609_01170 PF13458 Periplasmic binding protein KI609_01180 PF12399 Branched-chain amino acid ATP-binding cassette transporter KI609_01180 PF00005 ABC transporter KI609_01185 PF00005 ABC transporter KI609_01190 PF00111 2Fe-2S iron-sulfur cluster binding domain KI609_01190 PF01799 [2Fe-2S] binding domain KI609_01195 PF00034 Cytochrome c KI609_01195 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase KI609_01195 PF13442 Cytochrome C oxidase, cbb3-type, subunit III KI609_01200 PF01878 EVE domain KI609_01210 PF01037 Lrp/AsnC ligand binding domain KI609_01225 PF02810 SEC-C motif KI609_01225 PF07517 SecA DEAD-like domain KI609_01225 PF01043 SecA preprotein cross-linking domain KI609_01225 PF07516 SecA Wing and Scaffold domain KI609_01230 PF13936 Helix-turn-helix domain KI609_01230 PF00665 Integrase core domain KI609_01235 PF02771 Acyl-CoA dehydrogenase, N-terminal domain KI609_01235 PF02770 Acyl-CoA dehydrogenase, middle domain KI609_01235 PF00441 Acyl-CoA dehydrogenase, C-terminal domain KI609_01235 PF12806 Acetyl-CoA dehydrogenase C-terminal like KI609_01240 PF03401 Tripartite tricarboxylate transporter family receptor KI609_01245 PF00106 short chain dehydrogenase KI609_01250 PF00550 Phosphopantetheine attachment site KI609_01250 PF00501 AMP-binding enzyme KI609_01250 PF13193 AMP-binding enzyme C-terminal domain KI609_01250 PF00975 Thioesterase domain KI609_01250 PF00668 Condensation domain KI609_01255 PF00378 Enoyl-CoA hydratase/isomerase KI609_01270 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KI609_01270 PF03466 LysR substrate binding domain KI609_01280 PF01078 Magnesium chelatase, subunit ChlI KI609_01280 PF13335 Magnesium chelatase, subunit ChlI C-terminal KI609_01290 PF00543 Nitrogen regulatory protein P-II KI609_01295 PF00909 Ammonium Transporter Family KI609_01300 PF01565 FAD binding domain KI609_01310 PF02754 Cysteine-rich domain KI609_01310 PF13183 4Fe-4S dicluster domain KI609_01315 PF17516 ProQ C-terminal domain KI609_01315 PF04352 ProQ/FINO family KI609_01335 PF00255 Glutathione peroxidase KI609_01345 PF07690 Major Facilitator Superfamily KI609_01350 PF00842 Alanine racemase, C-terminal domain KI609_01350 PF01168 Alanine racemase, N-terminal domain KI609_01380 PF03466 LysR substrate binding domain KI609_01380 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KI609_01385 PF01810 LysE type translocator KI609_01390 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle KI609_01395 PF14497 Glutathione S-transferase, C-terminal domain KI609_01395 PF02798 Glutathione S-transferase, N-terminal domain KI609_01400 PF02558 Ketopantoate reductase PanE/ApbA KI609_01400 PF08546 Ketopantoate reductase PanE/ApbA C terminal KI609_01405 PF03328 HpcH/HpaI aldolase/citrate lyase family KI609_01410 PF18073 Rubredoxin metal binding domain KI609_01425 PF01063 Amino-transferase class IV KI609_01435 PF13439 Glycosyltransferase Family 4 KI609_01435 PF00534 Glycosyl transferases group 1 KI609_01445 PF00535 Glycosyl transferase family 2 KI609_01455 PF03060 Nitronate monooxygenase KI609_01460 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KI609_01460 PF03466 LysR substrate binding domain KI609_01465 PF06779 Uncharacterised MFS-type transporter YbfB KI609_01470 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KI609_01470 PF00672 HAMP domain KI609_01470 PF00512 His Kinase A (phospho-acceptor) domain KI609_01475 PF00486 Transcriptional regulatory protein, C terminal KI609_01475 PF00072 Response regulator receiver domain KI609_01480 PF07690 Major Facilitator Superfamily KI609_01485 PF13181 Tetratricopeptide repeat KI609_01485 PF01435 Peptidase family M48 KI609_01490 PF00990 Diguanylate cyclase, GGDEF domain KI609_01495 PF00753 Metallo-beta-lactamase superfamily KI609_01500 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain KI609_01500 PF00437 Type II/IV secretion system protein KI609_01505 PF03372 Endonuclease/Exonuclease/phosphatase family KI609_01510 PF00156 Phosphoribosyl transferase domain KI609_01520 PF02934 GatB/GatE catalytic domain KI609_01520 PF02637 GatB domain KI609_01525 PF01425 Amidase KI609_01530 PF02686 Glu-tRNAGln amidotransferase C subunit KI609_01545 PF04093 rod shape-determining protein MreD KI609_01550 PF03717 Penicillin-binding Protein dimerisation domain KI609_01550 PF00905 Penicillin binding protein transpeptidase domain KI609_01560 PF00005 ABC transporter KI609_01565 PF00528 Binding-protein-dependent transport system inner membrane component KI609_01570 PF00497 Bacterial extracellular solute-binding proteins, family 3 KI609_01575 PF01925 Sulfite exporter TauE/SafE KI609_01580 PF00909 Ammonium Transporter Family KI609_01590 PF05199 GMC oxidoreductase KI609_01590 PF00732 GMC oxidoreductase KI609_01595 PF02405 Permease MlaE KI609_01600 PF00005 ABC transporter KI609_01625 PF05532 CsbD-like KI609_01640 PF00990 Diguanylate cyclase, GGDEF domain KI609_01650 PF06123 Inner membrane protein CreD KI609_01660 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KI609_01660 PF00672 HAMP domain KI609_01660 PF00512 His Kinase A (phospho-acceptor) domain KI609_01665 PF00072 Response regulator receiver domain KI609_01665 PF00486 Transcriptional regulatory protein, C terminal KI609_01670 PF01914 MarC family integral membrane protein KI609_01680 PF01738 Dienelactone hydrolase family KI609_01685 PF01544 CorA-like Mg2+ transporter protein KI609_01690 PF00490 Delta-aminolevulinic acid dehydratase KI609_01695 PF03653 Uncharacterised protein family (UPF0093) KI609_01710 PF02129 X-Pro dipeptidyl-peptidase (S15 family) KI609_01715 PF00768 D-alanyl-D-alanine carboxypeptidase KI609_01715 PF07943 Penicillin-binding protein 5, C-terminal domain KI609_01720 PF00164 Ribosomal protein S12/S23 KI609_01725 PF00177 Ribosomal protein S7p/S5e KI609_01730 PF00009 Elongation factor Tu GTP binding domain KI609_01730 PF03764 Elongation factor G, domain IV KI609_01730 PF00679 Elongation factor G C-terminus KI609_01730 PF14492 Elongation Factor G, domain II KI609_01730 PF03144 Elongation factor Tu domain 2 KI609_01735 PF03143 Elongation factor Tu C-terminal domain KI609_01735 PF03144 Elongation factor Tu domain 2 KI609_01735 PF00009 Elongation factor Tu GTP binding domain KI609_01740 PF00338 Ribosomal protein S10p/S20e KI609_01745 PF00297 Ribosomal protein L3 KI609_01750 PF00573 Ribosomal protein L4/L1 family KI609_01755 PF00276 Ribosomal protein L23 KI609_01760 PF03947 Ribosomal Proteins L2, C-terminal domain KI609_01760 PF00181 Ribosomal Proteins L2, RNA binding domain KI609_01765 PF00203 Ribosomal protein S19 KI609_01770 PF00237 Ribosomal protein L22p/L17e KI609_01775 PF00189 Ribosomal protein S3, C-terminal domain KI609_01775 PF07650 KH domain KI609_01780 PF00252 Ribosomal protein L16p/L10e KI609_01785 PF00831 Ribosomal L29 protein KI609_01790 PF00366 Ribosomal protein S17 KI609_01795 PF08534 Redoxin KI609_01810 PF01322 Cytochrome C' KI609_01815 PF00578 AhpC/TSA family KI609_01835 PF00381 PTS HPr component phosphorylation site KI609_01840 PF05524 PEP-utilising enzyme, N-terminal KI609_01840 PF00391 PEP-utilising enzyme, mobile domain KI609_01840 PF02896 PEP-utilising enzyme, TIM barrel domain KI609_01860 PF04055 Radical SAM superfamily KI609_01860 PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family KI609_01865 PF03099 Biotin/lipoate A/B protein ligase family KI609_01870 PF04359 Protein of unknown function (DUF493) KI609_01880 PF00119 ATP synthase A chain KI609_01885 PF00137 ATP synthase subunit C KI609_01890 PF00430 ATP synthase B/B' CF(0) KI609_01895 PF00213 ATP synthase delta (OSCP) subunit KI609_01900 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain KI609_01900 PF00306 ATP synthase alpha/beta chain, C terminal domain KI609_01900 PF02874 ATP synthase alpha/beta family, beta-barrel domain KI609_01905 PF00231 ATP synthase KI609_01910 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain KI609_01910 PF02874 ATP synthase alpha/beta family, beta-barrel domain KI609_01915 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain KI609_01950 PF13442 Cytochrome C oxidase, cbb3-type, subunit III KI609_01955 PF02321 Outer membrane efflux protein KI609_01960 PF00873 AcrB/AcrD/AcrF family KI609_01965 PF00529 HlyD membrane-fusion protein of T1SS KI609_01965 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion KI609_01970 PF00440 Bacterial regulatory proteins, tetR family KI609_01970 PF08361 MAATS-type transcriptional repressor, C-terminal region KI609_01995 PF00009 Elongation factor Tu GTP binding domain KI609_01995 PF03144 Elongation factor Tu domain 2 KI609_01995 PF03143 Elongation factor Tu C-terminal domain KI609_02005 PF00584 SecE/Sec61-gamma subunits of protein translocation complex KI609_02010 PF00467 KOW motif KI609_02010 PF02357 Transcription termination factor nusG KI609_02015 PF00298 Ribosomal protein L11, RNA binding domain KI609_02015 PF03946 Ribosomal protein L11, N-terminal domain KI609_02020 PF00687 Ribosomal protein L1p/L10e family KI609_02025 PF00466 Ribosomal protein L10 KI609_02030 PF00542 Ribosomal protein L7/L12 C-terminal domain KI609_02030 PF16320 Ribosomal protein L7/L12 dimerisation domain KI609_02035 PF04565 RNA polymerase Rpb2, domain 3 KI609_02035 PF04560 RNA polymerase Rpb2, domain 7 KI609_02035 PF00562 RNA polymerase Rpb2, domain 6 KI609_02035 PF10385 RNA polymerase beta subunit external 1 domain KI609_02035 PF04561 RNA polymerase Rpb2, domain 2 KI609_02035 PF04563 RNA polymerase beta subunit KI609_02040 PF04997 RNA polymerase Rpb1, domain 1 KI609_02040 PF04998 RNA polymerase Rpb1, domain 5 KI609_02040 PF05000 RNA polymerase Rpb1, domain 4 KI609_02040 PF04983 RNA polymerase Rpb1, domain 3 KI609_02040 PF00623 RNA polymerase Rpb1, domain 2 KI609_02050 PF01029 NusB family KI609_02050 PF01189 16S rRNA methyltransferase RsmB/F KI609_02060 PF00989 PAS fold KI609_02060 PF00512 His Kinase A (phospho-acceptor) domain KI609_02060 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KI609_02060 PF00672 HAMP domain KI609_02065 PF00158 Sigma-54 interaction domain KI609_02065 PF00072 Response regulator receiver domain KI609_02065 PF02954 Bacterial regulatory protein, Fis family KI609_02080 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KI609_02080 PF03466 LysR substrate binding domain KI609_02085 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KI609_02085 PF03466 LysR substrate binding domain KI609_02090 PF00248 Aldo/keto reductase family KI609_02095 PF02525 Flavodoxin-like fold KI609_02100 PF00248 Aldo/keto reductase family KI609_02125 PF13657 HipA N-terminal domain KI609_02125 PF07804 HipA-like C-terminal domain KI609_02135 PF00012 Hsp70 protein KI609_02140 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases KI609_02145 PF02021 Uncharacterised protein family UPF0102 KI609_02150 PF13580 SIS domain KI609_02155 PF04972 BON domain KI609_02160 PF13006 Insertion element 4 transposase N-terminal KI609_02160 PF01609 Transposase DDE domain KI609_02165 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase KI609_02165 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase KI609_02170 PF00437 Type II/IV secretion system protein KI609_02175 PF00027 Cyclic nucleotide-binding domain KI609_02175 PF13545 Crp-like helix-turn-helix domain KI609_02180 PF00437 Type II/IV secretion system protein KI609_02185 PF01168 Alanine racemase, N-terminal domain KI609_02190 PF01212 Beta-eliminating lyase KI609_02195 PF13458 Periplasmic binding protein KI609_02205 PF13193 AMP-binding enzyme C-terminal domain KI609_02205 PF00501 AMP-binding enzyme KI609_02210 PF02785 Biotin carboxylase C-terminal domain KI609_02210 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain KI609_02210 PF00364 Biotin-requiring enzyme KI609_02210 PF00289 Biotin carboxylase, N-terminal domain KI609_02220 PF04286 Protein of unknown function (DUF445) KI609_02235 PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) KI609_02240 PF04172 LrgB-like family KI609_02245 PF03788 LrgA family KI609_02250 PF01565 FAD binding domain KI609_02250 PF02913 FAD linked oxidases, C-terminal domain KI609_02260 PF03466 LysR substrate binding domain KI609_02260 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KI609_02265 PF00551 Formyl transferase KI609_02270 PF00990 Diguanylate cyclase, GGDEF domain KI609_02270 PF00563 EAL domain KI609_02270 PF03707 Bacterial signalling protein N terminal repeat KI609_02280 PF07730 Histidine kinase KI609_02280 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KI609_02280 PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term KI609_02280 PF00672 HAMP domain KI609_02285 PF00196 Bacterial regulatory proteins, luxR family KI609_02285 PF00072 Response regulator receiver domain KI609_02290 PF07690 Major Facilitator Superfamily KI609_02295 PF07690 Major Facilitator Superfamily KI609_02300 PF00384 Molybdopterin oxidoreductase KI609_02300 PF01568 Molydopterin dinucleotide binding domain KI609_02300 PF14710 Respiratory nitrate reductase alpha N-terminal KI609_02305 PF14711 Respiratory nitrate reductase beta C-terminal KI609_02305 PF13247 4Fe-4S dicluster domain KI609_02310 PF02613 Nitrate reductase delta subunit KI609_02315 PF02665 Nitrate reductase gamma subunit KI609_02325 PF00484 Carbonic anhydrase KI609_02330 PF03477 ATP cone domain KI609_02330 PF00317 Ribonucleotide reductase, all-alpha domain KI609_02330 PF02867 Ribonucleotide reductase, barrel domain KI609_02350 PF01814 Hemerythrin HHE cation binding domain KI609_02380 PF01609 Transposase DDE domain KI609_02380 PF05598 Transposase domain (DUF772) KI609_02385 PF03401 Tripartite tricarboxylate transporter family receptor KI609_02400 PF16925 Tetracyclin repressor-like, C-terminal domain KI609_02400 PF00440 Bacterial regulatory proteins, tetR family KI609_02405 PF00465 Iron-containing alcohol dehydrogenase KI609_02415 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KI609_02415 PF03466 LysR substrate binding domain KI609_02420 PF17954 Quercetinase C-terminal cupin domain KI609_02420 PF02678 Pirin KI609_02425 PF00857 Isochorismatase family KI609_02430 PF00561 alpha/beta hydrolase fold KI609_02435 PF07969 Amidohydrolase family KI609_02445 PF07690 Major Facilitator Superfamily KI609_02450 PF04879 Molybdopterin oxidoreductase Fe4S4 domain KI609_02450 PF00384 Molybdopterin oxidoreductase KI609_02450 PF01568 Molydopterin dinucleotide binding domain KI609_02460 PF07687 Peptidase dimerisation domain KI609_02460 PF01546 Peptidase family M20/M25/M40 KI609_02465 PF07687 Peptidase dimerisation domain KI609_02465 PF01546 Peptidase family M20/M25/M40 KI609_02485 PF13378 Enolase C-terminal domain-like KI609_02495 PF03401 Tripartite tricarboxylate transporter family receptor KI609_02500 PF00701 Dihydrodipicolinate synthetase family KI609_02505 PF03466 LysR substrate binding domain KI609_02505 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KI609_02515 PF03007 Wax ester synthase-like Acyl-CoA acyltransferase domain KI609_02515 PF06974 Protein of unknown function (DUF1298) KI609_02525 PF00682 HMGL-like KI609_02530 PF02423 Ornithine cyclodeaminase/mu-crystallin family KI609_02550 PF03352 Methyladenine glycosylase KI609_02560 PF03960 ArsC family KI609_02570 PF06299 Protein of unknown function (DUF1045) KI609_02575 PF00392 Bacterial regulatory proteins, gntR family KI609_02580 PF06754 Phosphonate metabolism protein PhnG KI609_02585 PF05845 Bacterial phosphonate metabolism protein (PhnH) KI609_02590 PF05861 Bacterial phosphonate metabolism protein (PhnI) KI609_02595 PF06007 Phosphonate metabolism protein PhnJ KI609_02600 PF00583 Acetyltransferase (GNAT) family KI609_02605 PF00005 ABC transporter KI609_02610 PF00005 ABC transporter KI609_02615 PF07969 Amidohydrolase family KI609_02630 PF00528 Binding-protein-dependent transport system inner membrane component KI609_02645 PF00892 EamA-like transporter family KI609_02650 PF01042 Endoribonuclease L-PSP KI609_02655 PF13193 AMP-binding enzyme C-terminal domain KI609_02655 PF00501 AMP-binding enzyme KI609_02660 PF00441 Acyl-CoA dehydrogenase, C-terminal domain KI609_02660 PF02770 Acyl-CoA dehydrogenase, middle domain KI609_02660 PF02771 Acyl-CoA dehydrogenase, N-terminal domain KI609_02665 PF00378 Enoyl-CoA hydratase/isomerase KI609_02675 PF01494 FAD binding domain KI609_02690 PF03401 Tripartite tricarboxylate transporter family receptor KI609_02695 PF03401 Tripartite tricarboxylate transporter family receptor KI609_02700 PF14535 AMP-binding enzyme C-terminal domain KI609_02700 PF00501 AMP-binding enzyme KI609_02705 PF00005 ABC transporter KI609_02720 PF02653 Branched-chain amino acid transport system / permease component KI609_02725 PF00005 ABC transporter KI609_02725 PF12399 Branched-chain amino acid ATP-binding cassette transporter KI609_02730 PF00501 AMP-binding enzyme KI609_02735 PF13401 AAA domain KI609_02735 PF01471 Putative peptidoglycan binding domain KI609_02750 PF00027 Cyclic nucleotide-binding domain KI609_02750 PF13545 Crp-like helix-turn-helix domain KI609_02755 PF00672 HAMP domain KI609_02755 PF02203 Tar ligand binding domain homologue KI609_02755 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain KI609_02765 PF03707 Bacterial signalling protein N terminal repeat KI609_02765 PF00563 EAL domain KI609_02765 PF00990 Diguanylate cyclase, GGDEF domain KI609_02770 PF01479 S4 domain KI609_02770 PF00849 RNA pseudouridylate synthase KI609_02785 PF00183 Hsp90 protein KI609_02785 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KI609_02795 PF00672 HAMP domain KI609_02795 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KI609_02795 PF00512 His Kinase A (phospho-acceptor) domain KI609_02795 PF01627 Hpt domain KI609_02795 PF00072 Response regulator receiver domain KI609_02795 PF17149 Periplasmic sensor domain found in signal transduction proteins KI609_02800 PF01547 Bacterial extracellular solute-binding protein KI609_02820 PF00072 Response regulator receiver domain KI609_02820 PF00486 Transcriptional regulatory protein, C terminal KI609_02825 PF01636 Phosphotransferase enzyme family KI609_02835 PF03793 PASTA domain KI609_02835 PF00069 Protein kinase domain KI609_02845 PF02566 OsmC-like protein KI609_02850 PF01047 MarR family KI609_02855 PF00378 Enoyl-CoA hydratase/isomerase KI609_02860 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain KI609_02860 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain KI609_02865 PF05199 GMC oxidoreductase KI609_02865 PF00732 GMC oxidoreductase KI609_02875 PF02222 ATP-grasp domain KI609_02880 PF10423 Bacterial AMP nucleoside phosphorylase N-terminus KI609_02880 PF01048 Phosphorylase superfamily KI609_02885 PF03707 Bacterial signalling protein N terminal repeat KI609_02885 PF00990 Diguanylate cyclase, GGDEF domain KI609_02885 PF00563 EAL domain KI609_02890 PF00271 Helicase conserved C-terminal domain KI609_02890 PF03880 DbpA RNA binding domain KI609_02890 PF00270 DEAD/DEAH box helicase KI609_02895 PF01545 Cation efflux family KI609_02895 PF16916 Dimerisation domain of Zinc Transporter KI609_02900 PF02580 D-Tyr-tRNA(Tyr) deacylase KI609_02905 PF01925 Sulfite exporter TauE/SafE KI609_02910 PF00072 Response regulator receiver domain KI609_02915 PF08448 PAS fold KI609_02915 PF08447 PAS fold KI609_02915 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KI609_02925 PF03626 Prokaryotic Cytochrome C oxidase subunit IV KI609_02930 PF00510 Cytochrome c oxidase subunit III KI609_02935 PF00115 Cytochrome C and Quinol oxidase polypeptide I KI609_02940 PF06481 COX Aromatic Rich Motif KI609_02940 PF00116 Cytochrome C oxidase subunit II, periplasmic domain KI609_02945 PF07690 Major Facilitator Superfamily KI609_02945 PF00083 Sugar (and other) transporter KI609_02950 PF02130 Uncharacterized protein family UPF0054 KI609_02955 PF02562 PhoH-like protein KI609_02960 PF07499 RuvA, C-terminal domain KI609_02960 PF01330 RuvA N terminal domain KI609_02970 PF05491 RuvB C-terminal winged helix domain KI609_02970 PF05496 Holliday junction DNA helicase RuvB P-loop domain KI609_02970 PF17864 RuvB AAA lid domain KI609_02975 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion KI609_02980 PF02687 FtsX-like permease family KI609_02980 PF12704 MacB-like periplasmic core domain KI609_02985 PF00005 ABC transporter KI609_02990 PF04116 Fatty acid hydroxylase superfamily KI609_02995 PF01168 Alanine racemase, N-terminal domain KI609_02995 PF14031 Putative serine dehydratase domain KI609_03000 PF00300 Histidine phosphatase superfamily (branch 1) KI609_03010 PF01171 PP-loop family KI609_03040 PF00982 Glycosyltransferase family 20 KI609_03045 PF00723 Glycosyl hydrolases family 15 KI609_03050 PF02358 Trehalose-phosphatase KI609_03055 PF00085 Thioredoxin KI609_03070 PF05114 Protein of unknown function (DUF692) KI609_03080 PF04542 Sigma-70 region 2 KI609_03080 PF08281 Sigma-70, region 4 KI609_03085 PF06532 Negative regulator of sigma F KI609_03090 PF01966 HD domain KI609_03090 PF01743 Poly A polymerase head domain KI609_03090 PF12627 Probable RNA and SrmB- binding site of polymerase A KI609_03105 PF14497 Glutathione S-transferase, C-terminal domain KI609_03105 PF02798 Glutathione S-transferase, N-terminal domain KI609_03110 PF01812 5-formyltetrahydrofolate cyclo-ligase family KI609_03115 PF01464 Transglycosylase SLT domain KI609_03115 PF14718 Soluble lytic murein transglycosylase L domain KI609_03125 PF05025 RbsD / FucU transport protein family KI609_03130 PF00294 pfkB family carbohydrate kinase KI609_03130 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) KI609_03135 PF00356 Bacterial regulatory proteins, lacI family KI609_03140 PF02653 Branched-chain amino acid transport system / permease component KI609_03145 PF00005 ABC transporter KI609_03150 PF13407 Periplasmic binding protein domain KI609_03155 PF00501 AMP-binding enzyme KI609_03155 PF13193 AMP-binding enzyme C-terminal domain KI609_03170 PF00351 Biopterin-dependent aromatic amino acid hydroxylase KI609_03175 PF03401 Tripartite tricarboxylate transporter family receptor KI609_03180 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily KI609_03190 PF00561 alpha/beta hydrolase fold KI609_03195 PF01037 Lrp/AsnC ligand binding domain KI609_03205 PF00571 CBS domain KI609_03205 PF03471 Transporter associated domain KI609_03210 PF00795 Carbon-nitrogen hydrolase KI609_03215 PF07977 FabA-like domain KI609_03220 PF00109 Beta-ketoacyl synthase, N-terminal domain KI609_03220 PF02801 Beta-ketoacyl synthase, C-terminal domain KI609_03225 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KI609_03225 PF03466 LysR substrate binding domain KI609_03230 PF17763 Glutaminase/Asparaginase C-terminal domain KI609_03230 PF00710 Asparaginase, N-terminal KI609_03235 PF02091 Glycyl-tRNA synthetase alpha subunit KI609_03240 PF02092 Glycyl-tRNA synthetase beta subunit KI609_03240 PF05746 DALR anticodon binding domain KI609_03265 PF03309 Type III pantothenate kinase KI609_03285 PF00106 short chain dehydrogenase KI609_03290 PF16363 GDP-mannose 4,6 dehydratase KI609_03295 PF04321 RmlD substrate binding domain KI609_03300 PF00483 Nucleotidyl transferase KI609_03305 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase KI609_03315 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain KI609_03315 PF00437 Type II/IV secretion system protein KI609_03320 PF00482 Type II secretion system (T2SS), protein F KI609_03325 PF07963 Prokaryotic N-terminal methylation motif KI609_03325 PF08334 Type II secretion system (T2SS), protein G KI609_03335 PF07963 Prokaryotic N-terminal methylation motif KI609_03340 PF07963 Prokaryotic N-terminal methylation motif KI609_03340 PF11612 Type II secretion system (T2SS), protein J KI609_03365 PF03958 Bacterial type II/III secretion system short domain KI609_03365 PF00263 Bacterial type II and III secretion system protein KI609_03380 PF05698 Bacterial trigger factor protein (TF) C-terminus KI609_03390 PF00005 ABC transporter KI609_03410 PF01757 Acyltransferase family KI609_03415 PF05175 Methyltransferase small domain KI609_03430 PF00696 Amino acid kinase family KI609_03435 PF00486 Transcriptional regulatory protein, C terminal KI609_03435 PF00072 Response regulator receiver domain KI609_03440 PF08521 Two-component sensor kinase N-terminal KI609_03440 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KI609_03440 PF00512 His Kinase A (phospho-acceptor) domain KI609_03445 PF00440 Bacterial regulatory proteins, tetR family KI609_03455 PF02771 Acyl-CoA dehydrogenase, N-terminal domain KI609_03455 PF12806 Acetyl-CoA dehydrogenase C-terminal like KI609_03455 PF02770 Acyl-CoA dehydrogenase, middle domain KI609_03455 PF00441 Acyl-CoA dehydrogenase, C-terminal domain KI609_03465 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain KI609_03465 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain KI609_03465 PF00378 Enoyl-CoA hydratase/isomerase KI609_03475 PF02803 Thiolase, C-terminal domain KI609_03475 PF00108 Thiolase, N-terminal domain KI609_03490 PF00378 Enoyl-CoA hydratase/isomerase KI609_03505 PF01039 Carboxyl transferase domain KI609_03510 PF08713 DNA alkylation repair enzyme KI609_03515 PF02770 Acyl-CoA dehydrogenase, middle domain KI609_03515 PF02771 Acyl-CoA dehydrogenase, N-terminal domain KI609_03515 PF00441 Acyl-CoA dehydrogenase, C-terminal domain KI609_03520 PF00378 Enoyl-CoA hydratase/isomerase KI609_03525 PF00364 Biotin-requiring enzyme KI609_03525 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain KI609_03525 PF00289 Biotin carboxylase, N-terminal domain KI609_03525 PF02785 Biotin carboxylase C-terminal domain KI609_03530 PF02771 Acyl-CoA dehydrogenase, N-terminal domain KI609_03530 PF00441 Acyl-CoA dehydrogenase, C-terminal domain KI609_03530 PF02770 Acyl-CoA dehydrogenase, middle domain KI609_03535 PF05853 beta-keto acid cleavage enzyme KI609_03550 PF05598 Transposase domain (DUF772) KI609_03550 PF01609 Transposase DDE domain KI609_03560 PF02803 Thiolase, C-terminal domain KI609_03560 PF00108 Thiolase, N-terminal domain KI609_03570 PF02771 Acyl-CoA dehydrogenase, N-terminal domain KI609_03570 PF02770 Acyl-CoA dehydrogenase, middle domain KI609_03570 PF00441 Acyl-CoA dehydrogenase, C-terminal domain KI609_03580 PF00501 AMP-binding enzyme KI609_03585 PF00005 ABC transporter KI609_03590 PF00005 ABC transporter KI609_03590 PF12399 Branched-chain amino acid ATP-binding cassette transporter KI609_03600 PF02653 Branched-chain amino acid transport system / permease component KI609_03605 PF03061 Thioesterase superfamily KI609_03615 PF03061 Thioesterase superfamily KI609_03620 PF00664 ABC transporter transmembrane region KI609_03620 PF00005 ABC transporter KI609_03625 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain KI609_03625 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain KI609_03630 PF02321 Outer membrane efflux protein KI609_03635 PF00873 AcrB/AcrD/AcrF family KI609_03640 PF00529 HlyD membrane-fusion protein of T1SS KI609_03640 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion KI609_03650 PF03480 Bacterial extracellular solute-binding protein, family 7 KI609_03655 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component KI609_03655 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component KI609_03665 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KI609_03665 PF03466 LysR substrate binding domain KI609_03670 PF00497 Bacterial extracellular solute-binding proteins, family 3 KI609_03675 PF00497 Bacterial extracellular solute-binding proteins, family 3 KI609_03680 PF00528 Binding-protein-dependent transport system inner membrane component KI609_03685 PF00528 Binding-protein-dependent transport system inner membrane component KI609_03690 PF00005 ABC transporter KI609_03695 PF01979 Amidohydrolase family KI609_03705 PF01435 Peptidase family M48 KI609_03710 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain KI609_03710 PF00672 HAMP domain KI609_03710 PF02203 Tar ligand binding domain homologue KI609_03720 PF03706 Lysylphosphatidylglycerol synthase TM region KI609_03725 PF13091 PLD-like domain KI609_03730 PF03372 Endonuclease/Exonuclease/phosphatase family KI609_03735 PF00291 Pyridoxal-phosphate dependent enzyme KI609_03740 PF08241 Methyltransferase domain KI609_03755 PF05987 Bacterial protein of unknown function (DUF898) KI609_03770 PF16123 Hydroxyacylglutathione hydrolase C-terminus KI609_03770 PF00753 Metallo-beta-lactamase superfamily KI609_03775 PF00248 Aldo/keto reductase family KI609_03780 PF07690 Major Facilitator Superfamily KI609_03785 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KI609_03785 PF03466 LysR substrate binding domain KI609_03795 PF00043 Glutathione S-transferase, C-terminal domain KI609_03795 PF02798 Glutathione S-transferase, N-terminal domain KI609_03800 PF01678 Diaminopimelate epimerase KI609_03810 PF00589 Phage integrase family KI609_03810 PF02899 Phage integrase, N-terminal SAM-like domain KI609_03815 PF00563 EAL domain KI609_03815 PF08447 PAS fold KI609_03815 PF08448 PAS fold KI609_03815 PF00990 Diguanylate cyclase, GGDEF domain KI609_03820 PF17785 PUA-like domain KI609_03820 PF10672 S-adenosylmethionine-dependent methyltransferase KI609_03825 PF13193 AMP-binding enzyme C-terminal domain KI609_03825 PF00501 AMP-binding enzyme KI609_03830 PF03401 Tripartite tricarboxylate transporter family receptor KI609_03840 PF07683 Cobalamin synthesis protein cobW C-terminal domain KI609_03840 PF02492 CobW/HypB/UreG, nucleotide-binding domain KI609_03845 PF01258 Prokaryotic dksA/traR C4-type zinc finger KI609_03855 PF00227 Proteasome subunit KI609_03860 PF00004 ATPase family associated with various cellular activities (AAA) KI609_03860 PF07724 AAA domain (Cdc48 subfamily) KI609_03865 PF02381 MraZ protein, putative antitoxin-like KI609_03870 PF01795 MraW methylase family KI609_03880 PF00905 Penicillin binding protein transpeptidase domain KI609_03880 PF03717 Penicillin-binding Protein dimerisation domain KI609_03885 PF02875 Mur ligase family, glutamate ligase domain KI609_03885 PF08245 Mur ligase middle domain KI609_03890 PF02875 Mur ligase family, glutamate ligase domain KI609_03890 PF08245 Mur ligase middle domain KI609_03890 PF01225 Mur ligase family, catalytic domain KI609_03895 PF00953 Glycosyl transferase family 4 KI609_03895 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 KI609_03900 PF08245 Mur ligase middle domain KI609_03900 PF02875 Mur ligase family, glutamate ligase domain KI609_03905 PF01098 Cell cycle protein KI609_03910 PF04101 Glycosyltransferase family 28 C-terminal domain KI609_03910 PF03033 Glycosyltransferase family 28 N-terminal domain KI609_03915 PF01225 Mur ligase family, catalytic domain KI609_03915 PF02875 Mur ligase family, glutamate ligase domain KI609_03915 PF08245 Mur ligase middle domain KI609_03920 PF07478 D-ala D-ala ligase C-terminus KI609_03920 PF01820 D-ala D-ala ligase N-terminus KI609_03925 PF03799 Cell division protein FtsQ KI609_03925 PF08478 POTRA domain, FtsQ-type KI609_03930 PF02491 SHS2 domain inserted in FTSA KI609_03935 PF00091 Tubulin/FtsZ family, GTPase domain KI609_03935 PF12327 FtsZ family, C-terminal domain KI609_03940 PF08269 Cache domain KI609_03940 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain KI609_03945 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase KI609_03955 PF13667 ThiC-associated domain KI609_03955 PF01964 Radical SAM ThiC family KI609_03960 PF00672 HAMP domain KI609_03960 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain KI609_03960 PF02203 Tar ligand binding domain homologue KI609_03965 PF00437 Type II/IV secretion system protein KI609_03970 PF03958 Bacterial type II/III secretion system short domain KI609_03970 PF00263 Bacterial type II and III secretion system protein KI609_03995 PF11612 Type II secretion system (T2SS), protein J KI609_03995 PF07963 Prokaryotic N-terminal methylation motif KI609_04000 PF02501 Type II secretion system (T2SS), protein I KI609_04000 PF07963 Prokaryotic N-terminal methylation motif KI609_04010 PF08334 Type II secretion system (T2SS), protein G KI609_04010 PF07963 Prokaryotic N-terminal methylation motif KI609_04025 PF02654 Cobalamin-5-phosphate synthase KI609_04030 PF00585 C-terminal regulatory domain of Threonine dehydratase KI609_04030 PF00291 Pyridoxal-phosphate dependent enzyme KI609_04035 PF02566 OsmC-like protein KI609_04040 PF03232 Ubiquinone biosynthesis protein COQ7 KI609_04045 PF13609 Gram-negative porin KI609_04050 PF00267 Gram-negative porin KI609_04055 PF00528 Binding-protein-dependent transport system inner membrane component KI609_04060 PF01546 Peptidase family M20/M25/M40 KI609_04060 PF07687 Peptidase dimerisation domain KI609_04070 PF12911 N-terminal TM domain of oligopeptide transport permease C KI609_04070 PF00528 Binding-protein-dependent transport system inner membrane component KI609_04075 PF08352 Oligopeptide/dipeptide transporter, C-terminal region KI609_04075 PF00005 ABC transporter KI609_04080 PF08352 Oligopeptide/dipeptide transporter, C-terminal region KI609_04080 PF00005 ABC transporter KI609_04090 PF01380 SIS domain KI609_04090 PF01418 Helix-turn-helix domain, rpiR family KI609_04090 PF02685 Glucokinase KI609_04100 PF00528 Binding-protein-dependent transport system inner membrane component KI609_04105 PF08402 TOBE domain KI609_04105 PF00005 ABC transporter KI609_04110 PF00923 Transaldolase/Fructose-6-phosphate aldolase KI609_04115 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KI609_04115 PF00512 His Kinase A (phospho-acceptor) domain KI609_04120 PF00072 Response regulator receiver domain KI609_04120 PF00486 Transcriptional regulatory protein, C terminal KI609_04125 PF01547 Bacterial extracellular solute-binding protein KI609_04135 PF00528 Binding-protein-dependent transport system inner membrane component KI609_04140 PF00528 Binding-protein-dependent transport system inner membrane component KI609_04145 PF08402 TOBE domain KI609_04145 PF00005 ABC transporter KI609_04150 PF02685 Glucokinase KI609_04155 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily KI609_04160 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain KI609_04160 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain KI609_04165 PF00342 Phosphoglucose isomerase KI609_04180 PF00920 Dehydratase family KI609_04185 PF01081 KDPG and KHG aldolase KI609_04215 PF03006 Haemolysin-III related KI609_04240 PF13193 AMP-binding enzyme C-terminal domain KI609_04240 PF00501 AMP-binding enzyme KI609_04245 PF00912 Transglycosylase KI609_04250 PF08501 Shikimate dehydrogenase substrate binding domain KI609_04250 PF01488 Shikimate / quinate 5-dehydrogenase KI609_04250 PF18317 Shikimate 5'-dehydrogenase C-terminal domain KI609_04260 PF00773 RNB domain KI609_04270 PF04542 Sigma-70 region 2 KI609_04270 PF08281 Sigma-70, region 4 KI609_04280 PF00034 Cytochrome c KI609_04295 PF05728 Uncharacterised protein family (UPF0227) KI609_04300 PF00069 Protein kinase domain KI609_04300 PF13360 PQQ-like domain KI609_04305 PF01098 Cell cycle protein KI609_04310 PF01523 Putative modulator of DNA gyrase KI609_04320 PF00793 DAHP synthetase I family KI609_04330 PF01225 Mur ligase family, catalytic domain KI609_04330 PF02875 Mur ligase family, glutamate ligase domain KI609_04330 PF08245 Mur ligase middle domain KI609_04340 PF00578 AhpC/TSA family KI609_04345 PF00364 Biotin-requiring enzyme KI609_04350 PF02785 Biotin carboxylase C-terminal domain KI609_04350 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain KI609_04350 PF00289 Biotin carboxylase, N-terminal domain KI609_04370 PF00294 pfkB family carbohydrate kinase KI609_04385 PF00268 Ribonucleotide reductase, small chain KI609_04390 PF00317 Ribonucleotide reductase, all-alpha domain KI609_04390 PF03477 ATP cone domain KI609_04390 PF02867 Ribonucleotide reductase, barrel domain KI609_04395 PF01510 N-acetylmuramoyl-L-alanine amidase KI609_04400 PF02954 Bacterial regulatory protein, Fis family KI609_04400 PF00072 Response regulator receiver domain KI609_04400 PF00158 Sigma-54 interaction domain KI609_04405 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KI609_04405 PF00512 His Kinase A (phospho-acceptor) domain KI609_04420 PF02978 Signal peptide binding domain KI609_04420 PF00448 SRP54-type protein, GTPase domain KI609_04420 PF02881 SRP54-type protein, helical bundle domain KI609_04425 PF00535 Glycosyl transferase family 2 KI609_04430 PF04349 Periplasmic glucan biosynthesis protein, MdoG KI609_04435 PF00072 Response regulator receiver domain KI609_04435 PF00158 Sigma-54 interaction domain KI609_04445 PF00512 His Kinase A (phospho-acceptor) domain KI609_04445 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KI609_04450 PF04055 Radical SAM superfamily KI609_04450 PF00919 Uncharacterized protein family UPF0004 KI609_04450 PF01938 TRAM domain KI609_04465 PF00378 Enoyl-CoA hydratase/isomerase KI609_04475 PF10411 Disulfide bond isomerase protein N-terminus KI609_04475 PF13098 Thioredoxin-like domain KI609_04480 PF01494 FAD binding domain KI609_04485 PF03473 MOSC domain KI609_04485 PF03476 MOSC N-terminal beta barrel domain KI609_04485 PF00111 2Fe-2S iron-sulfur cluster binding domain KI609_04490 PF01926 50S ribosome-binding GTPase KI609_04490 PF06071 Protein of unknown function (DUF933) KI609_04495 PF00892 EamA-like transporter family KI609_04500 PF00005 ABC transporter KI609_04500 PF02687 FtsX-like permease family KI609_04500 PF12704 MacB-like periplasmic core domain KI609_04520 PF09335 SNARE associated Golgi protein KI609_04530 PF01207 Dihydrouridine synthase (Dus) KI609_04535 PF02954 Bacterial regulatory protein, Fis family KI609_04540 PF02142 MGS-like domain KI609_04540 PF01808 AICARFT/IMPCHase bienzyme KI609_04545 PF09423 PhoD-like phosphatase KI609_04545 PF16655 PhoD-like phosphatase, N-terminal domain KI609_04550 PF01494 FAD binding domain KI609_04555 PF09339 IclR helix-turn-helix domain KI609_04555 PF01614 Bacterial transcriptional regulator KI609_04560 PF00202 Aminotransferase class-III KI609_04565 PF02581 Thiamine monophosphate synthase KI609_04565 PF03070 TENA/THI-4/PQQC family KI609_04565 PF08543 Phosphomethylpyrimidine kinase KI609_04570 PF00301 Rubredoxin KI609_04575 PF00072 Response regulator receiver domain KI609_04580 PF00072 Response regulator receiver domain KI609_04585 PF01584 CheW-like domain KI609_04590 PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term KI609_04590 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain KI609_04595 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KI609_04595 PF00072 Response regulator receiver domain KI609_04595 PF01627 Hpt domain KI609_04595 PF02895 Signal transducing histidine kinase, homodimeric domain KI609_04595 PF01584 CheW-like domain KI609_04600 PF00437 Type II/IV secretion system protein KI609_04605 PF03441 FAD binding domain of DNA photolyase KI609_04605 PF00875 DNA photolyase KI609_04610 PF02622 Uncharacterized ACR, COG1678 KI609_04615 PF03652 Holliday junction resolvase KI609_04620 PF00156 Phosphoribosyl transferase domain KI609_04625 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain KI609_04625 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain KI609_04630 PF01979 Amidohydrolase family KI609_04635 PF01553 Acyltransferase KI609_04645 PF08402 TOBE domain KI609_04645 PF00005 ABC transporter KI609_04650 PF00528 Binding-protein-dependent transport system inner membrane component KI609_04655 PF00672 HAMP domain KI609_04655 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KI609_04655 PF00512 His Kinase A (phospho-acceptor) domain KI609_04655 PF01627 Hpt domain KI609_04655 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) KI609_04655 PF00072 Response regulator receiver domain KI609_04665 PF07715 TonB-dependent Receptor Plug Domain KI609_04665 PF00593 TonB dependent receptor KI609_04675 PF00171 Aldehyde dehydrogenase family KI609_04680 PF13609 Gram-negative porin KI609_04685 PF13378 Enolase C-terminal domain-like KI609_04685 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain KI609_04690 PF00701 Dihydrodipicolinate synthetase family KI609_04700 PF01370 NAD dependent epimerase/dehydratase family KI609_04705 PF03480 Bacterial extracellular solute-binding protein, family 7 KI609_04715 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component KI609_04720 PF10282 Lactonase, 7-bladed beta-propeller KI609_04725 PF08666 SAF domain KI609_04725 PF04295 D-galactarate dehydratase / Altronate hydrolase, C terminus KI609_04740 PF13180 PDZ domain KI609_04740 PF17820 PDZ domain KI609_04745 PF00072 Response regulator receiver domain KI609_04745 PF00486 Transcriptional regulatory protein, C terminal KI609_04750 PF08521 Two-component sensor kinase N-terminal KI609_04750 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KI609_04750 PF00512 His Kinase A (phospho-acceptor) domain KI609_04755 PF13091 PLD-like domain KI609_04755 PF13396 Phospholipase_D-nuclease N-terminal KI609_04760 PF01037 Lrp/AsnC ligand binding domain KI609_04765 PF00892 EamA-like transporter family KI609_04790 PF00115 Cytochrome C and Quinol oxidase polypeptide I KI609_04805 PF00589 Phage integrase family KI609_04805 PF13356 Arm DNA-binding domain KI609_04915 PF00004 ATPase family associated with various cellular activities (AAA) KI609_04915 PF17862 AAA+ lid domain KI609_04915 PF01434 Peptidase family M41 KI609_04920 PF00034 Cytochrome c KI609_04940 PF09339 IclR helix-turn-helix domain KI609_04940 PF01614 Bacterial transcriptional regulator KI609_04945 PF01144 Coenzyme A transferase KI609_04950 PF01144 Coenzyme A transferase KI609_04955 PF02803 Thiolase, C-terminal domain KI609_04955 PF00108 Thiolase, N-terminal domain KI609_04960 PF12146 Serine aminopeptidase, S33 KI609_04975 PF00106 short chain dehydrogenase KI609_04980 PF02667 Short chain fatty acid transporter KI609_04985 PF02426 Muconolactone delta-isomerase KI609_04990 PF03401 Tripartite tricarboxylate transporter family receptor KI609_05000 PF03466 LysR substrate binding domain KI609_05000 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KI609_05015 PF03458 UPF0126 domain KI609_05035 PF07715 TonB-dependent Receptor Plug Domain KI609_05035 PF00593 TonB dependent receptor KI609_05040 PF02254 TrkA-N domain KI609_05040 PF00999 Sodium/hydrogen exchanger family KI609_05045 PF01810 LysE type translocator KI609_05055 PF01575 MaoC like domain KI609_05065 PF03466 LysR substrate binding domain KI609_05065 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KI609_05070 PF00588 SpoU rRNA Methylase family KI609_05075 PF00156 Phosphoribosyl transferase domain KI609_05080 PF08241 Methyltransferase domain KI609_05090 PF02790 Cytochrome C oxidase subunit II, transmembrane domain KI609_05090 PF00116 Cytochrome C oxidase subunit II, periplasmic domain KI609_05095 PF00115 Cytochrome C and Quinol oxidase polypeptide I KI609_05105 PF04442 Cytochrome c oxidase assembly protein CtaG/Cox11 KI609_05115 PF00510 Cytochrome c oxidase subunit III KI609_05140 PF01040 UbiA prenyltransferase family KI609_05145 PF02630 SCO1/SenC KI609_05150 PF03401 Tripartite tricarboxylate transporter family receptor KI609_05155 PF04542 Sigma-70 region 2 KI609_05155 PF04545 Sigma-70, region 4 KI609_05155 PF00140 Sigma-70 factor, region 1.2 KI609_05160 PF00990 Diguanylate cyclase, GGDEF domain KI609_05160 PF00563 EAL domain KI609_05160 PF03707 Bacterial signalling protein N terminal repeat KI609_05165 PF00448 SRP54-type protein, GTPase domain KI609_05165 PF02881 SRP54-type protein, helical bundle domain KI609_05170 PF00675 Insulinase (Peptidase family M16) KI609_05170 PF05193 Peptidase M16 inactive domain KI609_05175 PF05193 Peptidase M16 inactive domain KI609_05185 PF01467 Cytidylyltransferase-like KI609_05190 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KI609_05190 PF03466 LysR substrate binding domain KI609_05195 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain KI609_05195 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain KI609_05200 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus KI609_05200 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus KI609_05205 PF02556 Preprotein translocase subunit SecB KI609_05210 PF00462 Glutaredoxin KI609_05220 PF00300 Histidine phosphatase superfamily (branch 1) KI609_05225 PF03572 Peptidase family S41 KI609_05225 PF13180 PDZ domain KI609_05230 PF00899 ThiF family KI609_05240 PF00196 Bacterial regulatory proteins, luxR family KI609_05240 PF00072 Response regulator receiver domain KI609_05245 PF00672 HAMP domain KI609_05245 PF07730 Histidine kinase KI609_05245 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KI609_05250 PF07043 Protein of unknown function (DUF1328) KI609_05260 PF00210 Ferritin-like domain KI609_05270 PF10005 zinc-ribbon domain KI609_05270 PF15887 Putative zinc-binding metallo-peptidase KI609_05275 PF02569 Pantoate-beta-alanine ligase KI609_05280 PF02548 Ketopantoate hydroxymethyltransferase KI609_05285 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain KI609_05285 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain KI609_05290 PF02445 Quinolinate synthetase A protein KI609_05295 PF00425 chorismate binding enzyme KI609_05295 PF04715 Anthranilate synthase component I, N terminal region KI609_05300 PF00571 CBS domain KI609_05310 PF02910 Fumarate reductase flavoprotein C-term KI609_05310 PF00890 FAD binding domain KI609_05315 PF02616 Segregation and condensation protein ScpA KI609_05330 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain KI609_05330 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain KI609_05335 PF00890 FAD binding domain KI609_05345 PF01740 STAS domain KI609_05345 PF00916 Sulfate permease family KI609_05360 PF01588 Putative tRNA binding domain KI609_05360 PF09334 tRNA synthetases class I (M) KI609_05375 PF10609 NUBPL iron-transfer P-loop NTPase KI609_05380 PF10531 SLBB domain KI609_05380 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region KI609_05380 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit KI609_05385 PF04879 Molybdopterin oxidoreductase Fe4S4 domain KI609_05385 PF01568 Molydopterin dinucleotide binding domain KI609_05385 PF00384 Molybdopterin oxidoreductase KI609_05415 PF00384 Molybdopterin oxidoreductase KI609_05415 PF01568 Molydopterin dinucleotide binding domain KI609_05415 PF04879 Molybdopterin oxidoreductase Fe4S4 domain KI609_05420 PF13247 4Fe-4S dicluster domain KI609_05440 PF02634 FdhD/NarQ family KI609_05460 PF01152 Bacterial-like globin KI609_05465 PF04011 LemA family KI609_05470 PF01435 Peptidase family M48 KI609_05485 PF02872 5'-nucleotidase, C-terminal domain KI609_05485 PF00149 Calcineurin-like phosphoesterase KI609_05490 PF00488 MutS domain V KI609_05490 PF01713 Smr domain KI609_05495 PF04002 RadC-like JAB domain KI609_05500 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase KI609_05505 PF02401 LytB protein KI609_05510 PF01368 DHH family KI609_05510 PF02272 DHHA1 domain KI609_05510 PF01743 Poly A polymerase head domain KI609_05510 PF00571 CBS domain KI609_05515 PF13291 ACT domain KI609_05515 PF00291 Pyridoxal-phosphate dependent enzyme KI609_05520 PF02403 Seryl-tRNA synthetase N-terminal domain KI609_05520 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) KI609_05535 PF04381 Putative exonuclease, RdgC KI609_05570 PF00145 C-5 cytosine-specific DNA methylase KI609_05570 PF12728 Helix-turn-helix domain KI609_05575 PF00436 Single-strand binding protein family KI609_05670 PF01695 IstB-like ATP binding protein KI609_05855 PF13356 Arm DNA-binding domain KI609_05855 PF00589 Phage integrase family KI609_05880 PF04002 RadC-like JAB domain KI609_05925 PF00455 DeoR C terminal sensor domain KI609_05925 PF08220 DeoR-like helix-turn-helix domain KI609_05930 PF05506 Domain of unknown function (DUF756) KI609_05930 PF04185 Phosphoesterase family KI609_05945 PF01717 Cobalamin-independent synthase, Catalytic domain KI609_05945 PF08267 Cobalamin-independent synthase, N-terminal domain KI609_05950 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KI609_05950 PF03466 LysR substrate binding domain KI609_05955 PF00586 AIR synthase related protein, N-terminal domain KI609_05955 PF02769 AIR synthase related protein, C-terminal domain KI609_05965 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KI609_05965 PF00512 His Kinase A (phospho-acceptor) domain KI609_05975 PF00072 Response regulator receiver domain KI609_05975 PF00486 Transcriptional regulatory protein, C terminal KI609_05985 PF00579 tRNA synthetases class I (W and Y) KI609_05990 PF02163 Peptidase family M50 KI609_06000 PF01300 Telomere recombination KI609_06005 PF02811 PHP domain KI609_06010 PF02203 Tar ligand binding domain homologue KI609_06010 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain KI609_06010 PF00672 HAMP domain KI609_06015 PF02272 DHHA1 domain KI609_06015 PF17768 RecJ OB domain KI609_06015 PF01368 DHH family KI609_06025 PF12704 MacB-like periplasmic core domain KI609_06025 PF02687 FtsX-like permease family KI609_06030 PF00005 ABC transporter KI609_06035 PF07584 Aerotolerance regulator N-terminal KI609_06035 PF13519 von Willebrand factor type A domain KI609_06040 PF01882 Protein of unknown function DUF58 KI609_06045 PF17863 AAA lid domain KI609_06045 PF07726 ATPase family associated with various cellular activities (AAA) KI609_06050 PF13180 PDZ domain KI609_06050 PF00595 PDZ domain KI609_06055 PF01026 TatD related DNase KI609_06075 PF00437 Type II/IV secretion system protein KI609_06075 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain KI609_06080 PF07331 Tripartite tricarboxylate transporter TctB family KI609_06085 PF01970 Tripartite tricarboxylate transporter TctA family KI609_06100 PF01435 Peptidase family M48 KI609_06110 PF00106 short chain dehydrogenase KI609_06115 PF03480 Bacterial extracellular solute-binding protein, family 7 KI609_06120 PF00563 EAL domain KI609_06120 PF03707 Bacterial signalling protein N terminal repeat KI609_06120 PF00990 Diguanylate cyclase, GGDEF domain KI609_06125 PF01545 Cation efflux family KI609_06130 PF02694 Uncharacterised BCR, YnfA/UPF0060 family KI609_06135 PF00892 EamA-like transporter family KI609_06140 PF00107 Zinc-binding dehydrogenase KI609_06140 PF08240 Alcohol dehydrogenase GroES-like domain KI609_06150 PF13460 NAD(P)H-binding KI609_06160 PF03466 LysR substrate binding domain KI609_06160 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KI609_06165 PF13593 SBF-like CPA transporter family (DUF4137) KI609_06170 PF02690 Na+/Pi-cotransporter KI609_06175 PF01252 Signal peptidase (SPase) II KI609_06180 PF06827 Zinc finger found in FPG and IleRS KI609_06180 PF00133 tRNA synthetases class I (I, L, M and V) KI609_06180 PF08264 Anticodon-binding domain of tRNA KI609_06185 PF01687 Riboflavin kinase KI609_06185 PF06574 FAD synthetase KI609_06200 PF00512 His Kinase A (phospho-acceptor) domain KI609_06200 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KI609_06200 PF00672 HAMP domain KI609_06205 PF00486 Transcriptional regulatory protein, C terminal KI609_06205 PF00072 Response regulator receiver domain KI609_06225 PF02771 Acyl-CoA dehydrogenase, N-terminal domain KI609_06225 PF00441 Acyl-CoA dehydrogenase, C-terminal domain KI609_06225 PF02770 Acyl-CoA dehydrogenase, middle domain KI609_06230 PF02770 Acyl-CoA dehydrogenase, middle domain KI609_06230 PF00441 Acyl-CoA dehydrogenase, C-terminal domain KI609_06230 PF02771 Acyl-CoA dehydrogenase, N-terminal domain KI609_06235 PF04337 Protein of unknown function, DUF480 KI609_06240 PF00551 Formyl transferase KI609_06250 PF00486 Transcriptional regulatory protein, C terminal KI609_06250 PF00072 Response regulator receiver domain KI609_06255 PF00512 His Kinase A (phospho-acceptor) domain KI609_06255 PF00672 HAMP domain KI609_06255 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KI609_06270 PF01189 16S rRNA methyltransferase RsmB/F KI609_06270 PF01029 NusB family KI609_06280 PF00471 Ribosomal protein L33 KI609_06285 PF00830 Ribosomal L28 family KI609_06290 PF07992 Pyridine nucleotide-disulphide oxidoreductase KI609_06295 PF00027 Cyclic nucleotide-binding domain KI609_06295 PF13545 Crp-like helix-turn-helix domain KI609_06300 PF17854 FtsK alpha domain KI609_06300 PF09397 Ftsk gamma domain KI609_06300 PF01580 FtsK/SpoIIIE family KI609_06300 PF13491 4TM region of DNA translocase FtsK/SpoIIIE KI609_06305 PF03548 Outer membrane lipoprotein carrier protein LolA KI609_06310 PF03167 Uracil DNA glycosylase superfamily KI609_06320 PF00004 ATPase family associated with various cellular activities (AAA) KI609_06320 PF16193 AAA C-terminal domain KI609_06320 PF12002 MgsA AAA+ ATPase C terminal KI609_06325 PF02653 Branched-chain amino acid transport system / permease component KI609_06330 PF02653 Branched-chain amino acid transport system / permease component KI609_06330 PF11862 Domain of unknown function (DUF3382) KI609_06335 PF00005 ABC transporter KI609_06335 PF12399 Branched-chain amino acid ATP-binding cassette transporter KI609_06340 PF00005 ABC transporter KI609_06350 PF01865 Protein of unknown function DUF47 KI609_06355 PF01384 Phosphate transporter family KI609_06370 PF00886 Ribosomal protein S16 KI609_06375 PF01782 RimM N-terminal domain KI609_06375 PF05239 PRC-barrel domain KI609_06380 PF01746 tRNA (Guanine-1)-methyltransferase KI609_06385 PF01245 Ribosomal protein L19 KI609_06390 PF00293 NUDIX domain KI609_06395 PF17113 Regulatory signalling modulator protein AmpE KI609_06395 PF03186 CobD/Cbib protein KI609_06400 PF03193 RsgA GTPase KI609_06405 PF01329 Pterin 4 alpha carbinolamine dehydratase KI609_06415 PF00929 Exonuclease KI609_06420 PF00270 DEAD/DEAH box helicase KI609_06420 PF00271 Helicase conserved C-terminal domain KI609_06425 PF00563 EAL domain KI609_06425 PF00990 Diguanylate cyclase, GGDEF domain KI609_06425 PF05231 MASE1 KI609_06425 PF08447 PAS fold KI609_06425 PF08448 PAS fold KI609_06425 PF13426 PAS domain KI609_06430 PF07690 Major Facilitator Superfamily KI609_06440 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase KI609_06440 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase KI609_06450 PF00478 IMP dehydrogenase / GMP reductase domain KI609_06460 PF00580 UvrD/REP helicase N-terminal domain KI609_06460 PF13361 UvrD-like helicase C-terminal domain KI609_06505 PF00691 OmpA family KI609_06505 PF00223 Photosystem I psaA/psaB protein KI609_06550 PF01636 Phosphotransferase enzyme family KI609_06560 PF00144 Beta-lactamase KI609_06565 PF00476 DNA polymerase family A KI609_06565 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain KI609_06565 PF01612 3'-5' exonuclease KI609_06565 PF01367 5'-3' exonuclease, C-terminal SAM fold KI609_06570 PF00664 ABC transporter transmembrane region KI609_06570 PF00005 ABC transporter KI609_06575 PF05977 Transmembrane secretion effector KI609_06590 PF00698 Acyl transferase domain KI609_06590 PF08240 Alcohol dehydrogenase GroES-like domain KI609_06590 PF08659 KR domain KI609_06590 PF00550 Phosphopantetheine attachment site KI609_06590 PF14765 Polyketide synthase dehydratase KI609_06600 PF02798 Glutathione S-transferase, N-terminal domain KI609_06620 PF01590 GAF domain KI609_06620 PF00990 Diguanylate cyclase, GGDEF domain KI609_06620 PF00563 EAL domain KI609_06620 PF00360 Phytochrome region KI609_06625 PF01738 Dienelactone hydrolase family KI609_06635 PF00072 Response regulator receiver domain KI609_06635 PF00196 Bacterial regulatory proteins, luxR family KI609_06640 PF17200 Single Cache domain 2 KI609_06640 PF07730 Histidine kinase KI609_06645 PF05598 Transposase domain (DUF772) KI609_06645 PF01609 Transposase DDE domain KI609_06650 PF01042 Endoribonuclease L-PSP KI609_06670 PF03466 LysR substrate binding domain KI609_06670 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KI609_06675 PF00962 Adenosine/AMP deaminase KI609_06680 PF03401 Tripartite tricarboxylate transporter family receptor KI609_06685 PF02374 Anion-transporting ATPase KI609_06690 PF04397 LytTr DNA-binding domain KI609_06690 PF00072 Response regulator receiver domain KI609_06695 PF07694 5TMR of 5TMR-LYT KI609_06695 PF06580 Histidine kinase KI609_06700 PF14698 Argininosuccinate lyase C-terminal KI609_06700 PF00206 Lyase KI609_06705 PF03401 Tripartite tricarboxylate transporter family receptor KI609_06710 PF02203 Tar ligand binding domain homologue KI609_06710 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain KI609_06710 PF00672 HAMP domain KI609_06720 PF06628 Catalase-related immune-responsive KI609_06720 PF18011 C-terminal domain found in long catalases KI609_06720 PF00199 Catalase KI609_06750 PF02142 MGS-like domain KI609_06755 PF00912 Transglycosylase KI609_06755 PF14814 Bifunctional transglycosylase second domain KI609_06755 PF00905 Penicillin binding protein transpeptidase domain KI609_06760 PF00563 EAL domain KI609_06760 PF00990 Diguanylate cyclase, GGDEF domain KI609_06760 PF05231 MASE1 KI609_06760 PF08447 PAS fold KI609_06760 PF08448 PAS fold KI609_06760 PF13426 PAS domain KI609_06765 PF01070 FMN-dependent dehydrogenase KI609_06770 PF08281 Sigma-70, region 4 KI609_06770 PF04542 Sigma-70 region 2 KI609_06805 PF01266 FAD dependent oxidoreductase KI609_06810 PF07992 Pyridine nucleotide-disulphide oxidoreductase KI609_06810 PF04324 BFD-like [2Fe-2S] binding domain KI609_06820 PF00528 Binding-protein-dependent transport system inner membrane component KI609_06825 PF00528 Binding-protein-dependent transport system inner membrane component KI609_06830 PF08402 TOBE domain KI609_06830 PF00005 ABC transporter KI609_06835 PF09339 IclR helix-turn-helix domain KI609_06835 PF01614 Bacterial transcriptional regulator KI609_06870 PF00171 Aldehyde dehydrogenase family KI609_06880 PF00155 Aminotransferase class I and II KI609_06885 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain KI609_06885 PF00205 Thiamine pyrophosphate enzyme, central domain KI609_06885 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain KI609_06900 PF00817 impB/mucB/samB family KI609_06900 PF11799 impB/mucB/samB family C-terminal domain KI609_06905 PF08447 PAS fold KI609_06905 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain KI609_06915 PF14489 QueF-like protein KI609_06915 PF14819 Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term KI609_06925 PF03883 Peroxide stress protein YaaA KI609_06930 PF12111 Polyribonucleotide phosphorylase C terminal KI609_06930 PF00575 S1 RNA binding domain KI609_06930 PF10150 Ribonuclease E/G family KI609_06935 PF00849 RNA pseudouridylate synthase KI609_06935 PF01479 S4 domain KI609_06940 PF13419 Haloacid dehalogenase-like hydrolase KI609_06950 PF01343 Peptidase family S49 KI609_06950 PF06965 Na+/H+ antiporter 1 KI609_06955 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases KI609_06960 PF02545 Maf-like protein KI609_06965 PF02620 Large ribosomal RNA subunit accumulation protein YceD KI609_06970 PF01783 Ribosomal L32p protein family KI609_06975 PF02504 Fatty acid synthesis protein KI609_06980 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal KI609_06980 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III KI609_06985 PF00698 Acyl transferase domain KI609_06995 PF00550 Phosphopantetheine attachment site KI609_07000 PF00109 Beta-ketoacyl synthase, N-terminal domain KI609_07000 PF02801 Beta-ketoacyl synthase, C-terminal domain KI609_07010 PF08281 Sigma-70, region 4 KI609_07010 PF04542 Sigma-70 region 2 KI609_07025 PF13180 PDZ domain KI609_07035 PF06421 GTP-binding protein LepA C-terminus KI609_07035 PF00679 Elongation factor G C-terminus KI609_07035 PF00009 Elongation factor Tu GTP binding domain KI609_07040 PF10502 Signal peptidase, peptidase S26 KI609_07050 PF00035 Double-stranded RNA binding motif KI609_07050 PF14622 Ribonuclease-III-like KI609_07055 PF07650 KH domain KI609_07055 PF01926 50S ribosome-binding GTPase KI609_07060 PF02565 Recombination protein O C terminal KI609_07060 PF11967 Recombination protein O N terminal KI609_07065 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ KI609_07070 PF01648 4'-phosphopantetheinyl transferase superfamily KI609_07075 PF00933 Glycosyl hydrolase family 3 N terminal domain KI609_07100 PF00072 Response regulator receiver domain KI609_07100 PF00486 Transcriptional regulatory protein, C terminal KI609_07105 PF13493 Domain of unknown function (DUF4118) KI609_07105 PF13492 GAF domain KI609_07105 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KI609_07105 PF00512 His Kinase A (phospho-acceptor) domain KI609_07105 PF02702 Osmosensitive K+ channel His kinase sensor domain KI609_07110 PF02669 K+-transporting ATPase, c chain KI609_07120 PF03814 Potassium-transporting ATPase A subunit KI609_07130 PF01544 CorA-like Mg2+ transporter protein KI609_07140 PF02705 K+ potassium transporter KI609_07145 PF01609 Transposase DDE domain KI609_07145 PF05598 Transposase domain (DUF772) KI609_07170 PF00724 NADH:flavin oxidoreductase / NADH oxidase family KI609_07175 PF17932 Tetracyclin repressor-like, C-terminal domain KI609_07175 PF00440 Bacterial regulatory proteins, tetR family KI609_07215 PF00990 Diguanylate cyclase, GGDEF domain KI609_07220 PF00152 tRNA synthetases class II (D, K and N) KI609_07220 PF01336 OB-fold nucleic acid binding domain KI609_07235 PF02397 Bacterial sugar transferase KI609_07240 PF02347 Glycine cleavage system P-protein KI609_07245 PF02347 Glycine cleavage system P-protein KI609_07250 PF00733 Asparagine synthase KI609_07250 PF13537 Glutamine amidotransferase domain KI609_07255 PF00120 Glutamine synthetase, catalytic domain KI609_07280 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family KI609_07290 PF03102 NeuB family KI609_07290 PF08666 SAF domain KI609_07300 PF02348 Cytidylyltransferase KI609_07305 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family KI609_07310 PF02719 Polysaccharide biosynthesis protein KI609_07315 PF02719 Polysaccharide biosynthesis protein KI609_07325 PF02325 YGGT family KI609_07330 PF01039 Carboxyl transferase domain KI609_07330 PF17848 Acetyl-coA carboxylase zinc finger domain KI609_07335 PF00290 Tryptophan synthase alpha chain KI609_07340 PF00291 Pyridoxal-phosphate dependent enzyme KI609_07345 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase KI609_07350 PF01416 tRNA pseudouridine synthase KI609_07360 PF01118 Semialdehyde dehydrogenase, NAD binding domain KI609_07360 PF02774 Semialdehyde dehydrogenase, dimerisation domain KI609_07365 PF00180 Isocitrate/isopropylmalate dehydrogenase KI609_07370 PF00694 Aconitase C-terminal domain KI609_07380 PF00330 Aconitase family (aconitate hydratase) KI609_07390 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain KI609_07390 PF10996 Beta-Casp domain KI609_07390 PF00753 Metallo-beta-lactamase superfamily KI609_07395 PF00226 DnaJ domain KI609_07395 PF01556 DnaJ C terminal domain KI609_07395 PF00684 DnaJ central domain KI609_07400 PF00012 Hsp70 protein KI609_07405 PF01025 GrpE KI609_07410 PF01250 Ribosomal protein S6 KI609_07420 PF01084 Ribosomal protein S18 KI609_07425 PF03948 Ribosomal protein L9, C-terminal domain KI609_07425 PF01281 Ribosomal protein L9, N-terminal domain KI609_07430 PF00772 DnaB-like helicase N terminal domain KI609_07430 PF03796 DnaB-like helicase C terminal domain KI609_07440 PF02562 PhoH-like protein KI609_07440 PF13638 PIN domain KI609_07445 PF00578 AhpC/TSA family KI609_07450 PF04430 Protein of unknown function (DUF498/DUF598) KI609_07455 PF00155 Aminotransferase class I and II KI609_07460 PF03447 Homoserine dehydrogenase, NAD binding domain KI609_07460 PF00742 Homoserine dehydrogenase KI609_07460 PF01842 ACT domain KI609_07465 PF14821 Threonine synthase N terminus KI609_07465 PF00291 Pyridoxal-phosphate dependent enzyme KI609_07470 PF03205 Molybdopterin guanine dinucleotide synthesis protein B KI609_07475 PF03454 MoeA C-terminal region (domain IV) KI609_07475 PF00994 Probable molybdopterin binding domain KI609_07475 PF03453 MoeA N-terminal region (domain I and II) KI609_07505 PF02391 MoaE protein KI609_07510 PF10431 C-terminal, D2-small domain, of ClpB protein KI609_07510 PF02861 Clp amino terminal domain, pathogenicity island component KI609_07510 PF17871 AAA lid domain KI609_07510 PF07724 AAA domain (Cdc48 subfamily) KI609_07510 PF00004 ATPase family associated with various cellular activities (AAA) KI609_07520 PF00171 Aldehyde dehydrogenase family KI609_07525 PF00072 Response regulator receiver domain KI609_07525 PF00672 HAMP domain KI609_07525 PF00512 His Kinase A (phospho-acceptor) domain KI609_07525 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KI609_07525 PF01627 Hpt domain KI609_07530 PF00072 Response regulator receiver domain KI609_07530 PF00196 Bacterial regulatory proteins, luxR family KI609_07560 PF01207 Dihydrouridine synthase (Dus) KI609_07565 PF13091 PLD-like domain KI609_07570 PF00909 Ammonium Transporter Family KI609_07575 PF07963 Prokaryotic N-terminal methylation motif KI609_07575 PF00114 Pilin (bacterial filament) KI609_07595 PF05567 Neisseria PilC beta-propeller domain KI609_07600 PF16732 Type IV minor pilin ComP, DNA uptake sequence receptor KI609_07600 PF07963 Prokaryotic N-terminal methylation motif KI609_07605 PF01872 RibD C-terminal domain KI609_07605 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region KI609_07610 PF00155 Aminotransferase class I and II KI609_07615 PF00312 Ribosomal protein S15 KI609_07620 PF00013 KH domain KI609_07620 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain KI609_07620 PF01138 3' exoribonuclease family, domain 1 KI609_07620 PF03725 3' exoribonuclease family, domain 2 KI609_07620 PF00575 S1 RNA binding domain KI609_07625 PF14765 Polyketide synthase dehydratase KI609_07625 PF02801 Beta-ketoacyl synthase, C-terminal domain KI609_07625 PF00109 Beta-ketoacyl synthase, N-terminal domain KI609_07625 PF16197 Ketoacyl-synthetase C-terminal extension KI609_07625 PF08240 Alcohol dehydrogenase GroES-like domain KI609_07625 PF00698 Acyl transferase domain KI609_07625 PF08659 KR domain KI609_07625 PF00550 Phosphopantetheine attachment site KI609_07630 PF00121 Triosephosphate isomerase KI609_07635 PF03840 Preprotein translocase SecG subunit KI609_07645 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 KI609_07650 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit KI609_07655 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit KI609_07660 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit KI609_07670 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit KI609_07670 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region KI609_07670 PF10531 SLBB domain KI609_07675 PF00384 Molybdopterin oxidoreductase KI609_07675 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region KI609_07675 PF09326 NADH-ubiquinone oxidoreductase subunit G, C-terminal KI609_07680 PF00146 NADH dehydrogenase KI609_07685 PF12838 4Fe-4S dicluster domain KI609_07690 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 KI609_07695 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L KI609_07700 PF00361 Proton-conducting membrane transporter KI609_07700 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus KI609_07705 PF01059 NADH-ubiquinone oxidoreductase chain 4, amino terminus KI609_07705 PF00361 Proton-conducting membrane transporter KI609_07710 PF00361 Proton-conducting membrane transporter KI609_07725 PF00664 ABC transporter transmembrane region KI609_07725 PF00005 ABC transporter KI609_07730 PF12399 Branched-chain amino acid ATP-binding cassette transporter KI609_07730 PF00005 ABC transporter KI609_07735 PF00005 ABC transporter KI609_07745 PF02653 Branched-chain amino acid transport system / permease component KI609_07765 PF05598 Transposase domain (DUF772) KI609_07765 PF01609 Transposase DDE domain KI609_07770 PF03009 Glycerophosphoryl diester phosphodiesterase family KI609_07775 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase KI609_07775 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain KI609_07780 PF12146 Serine aminopeptidase, S33 KI609_07790 PF07690 Major Facilitator Superfamily KI609_07800 PF00005 ABC transporter KI609_07805 PF00011 Hsp20/alpha crystallin family KI609_07825 PF08676 MutL C terminal dimerisation domain KI609_07825 PF01119 DNA mismatch repair protein, C-terminal domain KI609_07830 PF09335 SNARE associated Golgi protein KI609_07845 PF11741 AMIN domain KI609_07845 PF01520 N-acetylmuramoyl-L-alanine amidase KI609_07855 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE KI609_07860 PF08331 Domain of unknown function (DUF1730) KI609_07865 PF13472 GDSL-like Lipase/Acylhydrolase family KI609_07875 PF03401 Tripartite tricarboxylate transporter family receptor KI609_07880 PF02899 Phage integrase, N-terminal SAM-like domain KI609_07880 PF00589 Phage integrase family KI609_07885 PF00563 EAL domain KI609_07885 PF08668 HDOD domain KI609_07890 PF08668 HDOD domain KI609_07890 PF00563 EAL domain KI609_07895 PF04305 Protein of unknown function (DUF455) KI609_07900 PF00132 Bacterial transferase hexapeptide (six repeats) KI609_07905 PF01430 Hsp33 protein KI609_07915 PF04977 Septum formation initiator KI609_07920 PF03952 Enolase, N-terminal domain KI609_07920 PF00113 Enolase, C-terminal TIM barrel domain KI609_07935 PF00793 DAHP synthetase I family KI609_07940 PF06418 CTP synthase N-terminus KI609_07940 PF00117 Glutamine amidotransferase class-I KI609_07945 PF04127 DNA / pantothenate metabolism flavoprotein KI609_07945 PF02441 Flavoprotein KI609_07950 PF00692 dUTPase KI609_07960 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase KI609_07965 PF08007 Cupin superfamily protein KI609_07980 PF00753 Metallo-beta-lactamase superfamily KI609_07985 PF06804 NlpB/DapX lipoprotein KI609_07990 PF00701 Dihydrodipicolinate synthetase family KI609_08010 PF01751 Toprim domain KI609_08010 PF00986 DNA gyrase B subunit, carboxyl terminus KI609_08010 PF00204 DNA gyrase B KI609_08010 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KI609_08015 PF00521 DNA gyrase/topoisomerase IV, subunit A KI609_08020 PF00672 HAMP domain KI609_08020 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain KI609_08020 PF02203 Tar ligand binding domain homologue KI609_08030 PF00753 Metallo-beta-lactamase superfamily KI609_08030 PF03772 Competence protein KI609_08035 PF14403 Circularly permuted ATP-grasp type 2 KI609_08050 PF09905 DNA-binding protein VF530 KI609_08055 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KI609_08055 PF03466 LysR substrate binding domain KI609_08060 PF07859 alpha/beta hydrolase fold KI609_08065 PF13533 Biotin-lipoyl like KI609_08070 PF00873 AcrB/AcrD/AcrF family KI609_08075 PF02321 Outer membrane efflux protein KI609_08080 PF00171 Aldehyde dehydrogenase family KI609_08095 PF07715 TonB-dependent Receptor Plug Domain KI609_08095 PF00593 TonB dependent receptor KI609_08100 PF07715 TonB-dependent Receptor Plug Domain KI609_08100 PF00593 TonB dependent receptor KI609_08110 PF00593 TonB dependent receptor KI609_08110 PF07715 TonB-dependent Receptor Plug Domain KI609_08125 PF07660 Secretin and TonB N terminus short domain KI609_08125 PF07715 TonB-dependent Receptor Plug Domain KI609_08125 PF00593 TonB dependent receptor KI609_08130 PF07715 TonB-dependent Receptor Plug Domain KI609_08130 PF00593 TonB dependent receptor KI609_08265 PF00210 Ferritin-like domain KI609_08275 PF10417 C-terminal domain of 1-Cys peroxiredoxin KI609_08275 PF00578 AhpC/TSA family KI609_08285 PF13192 Thioredoxin domain KI609_08285 PF07992 Pyridine nucleotide-disulphide oxidoreductase KI609_08290 PF03618 Kinase/pyrophosphorylase KI609_08295 PF00391 PEP-utilising enzyme, mobile domain KI609_08295 PF02896 PEP-utilising enzyme, TIM barrel domain KI609_08295 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain KI609_08305 PF00474 Sodium:solute symporter family KI609_08315 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase KI609_08325 PF03466 LysR substrate binding domain KI609_08325 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KI609_08330 PF00682 HMGL-like KI609_08335 PF02515 CoA-transferase family III KI609_08340 PF03401 Tripartite tricarboxylate transporter family receptor KI609_08345 PF03401 Tripartite tricarboxylate transporter family receptor KI609_08350 PF04546 Sigma-70, non-essential region KI609_08350 PF03979 Sigma-70 factor, region 1.1 KI609_08350 PF00140 Sigma-70 factor, region 1.2 KI609_08350 PF04542 Sigma-70 region 2 KI609_08350 PF04545 Sigma-70, region 4 KI609_08350 PF04539 Sigma-70 region 3 KI609_08355 PF10410 DnaB-helicase binding domain of primase KI609_08355 PF13662 Toprim domain KI609_08355 PF08275 DNA primase catalytic core, N-terminal domain KI609_08355 PF01807 CHC2 zinc finger KI609_08355 PF08278 DNA primase DnaG DnaB-binding KI609_08360 PF13416 Bacterial extracellular solute-binding protein KI609_08365 PF00563 EAL domain KI609_08365 PF00990 Diguanylate cyclase, GGDEF domain KI609_08365 PF03707 Bacterial signalling protein N terminal repeat KI609_08370 PF00501 AMP-binding enzyme KI609_08370 PF13193 AMP-binding enzyme C-terminal domain KI609_08375 PF09423 PhoD-like phosphatase KI609_08375 PF16655 PhoD-like phosphatase, N-terminal domain KI609_08380 PF00990 Diguanylate cyclase, GGDEF domain KI609_08385 PF16197 Ketoacyl-synthetase C-terminal extension KI609_08385 PF14765 Polyketide synthase dehydratase KI609_08385 PF00550 Phosphopantetheine attachment site KI609_08385 PF08659 KR domain KI609_08385 PF02801 Beta-ketoacyl synthase, C-terminal domain KI609_08385 PF00698 Acyl transferase domain KI609_08385 PF08240 Alcohol dehydrogenase GroES-like domain KI609_08385 PF00109 Beta-ketoacyl synthase, N-terminal domain KI609_08390 PF01975 Survival protein SurE KI609_08400 PF01551 Peptidase family M23 KI609_08400 PF01476 LysM domain KI609_08405 PF00849 RNA pseudouridylate synthase KI609_08405 PF01479 S4 domain KI609_08410 PF04079 Segregation and condensation complex subunit ScpB KI609_08415 PF01479 S4 domain KI609_08415 PF00849 RNA pseudouridylate synthase KI609_08420 PF00334 Nucleoside diphosphate kinase KI609_08425 PF04055 Radical SAM superfamily KI609_08440 PF04551 GcpE protein KI609_08445 PF03129 Anticodon binding domain KI609_08445 PF13393 Histidyl-tRNA synthetase KI609_08455 PF13360 PQQ-like domain KI609_08460 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal KI609_08460 PF01926 50S ribosome-binding GTPase KI609_08465 PF17209 Hfq protein KI609_08470 PF16360 GTP-binding GTPase Middle Region KI609_08470 PF13167 GTP-binding GTPase N-terminal KI609_08470 PF01926 50S ribosome-binding GTPase KI609_08475 PF12221 Bacterial membrane protein N terminal KI609_08475 PF01145 SPFH domain / Band 7 family KI609_08480 PF01145 SPFH domain / Band 7 family KI609_08485 PF13393 Histidyl-tRNA synthetase KI609_08490 PF00709 Adenylosuccinate synthetase KI609_08525 PF00849 RNA pseudouridylate synthase KI609_08525 PF01479 S4 domain KI609_08555 PF00120 Glutamine synthetase, catalytic domain KI609_08555 PF03951 Glutamine synthetase, beta-Grasp domain KI609_08565 PF00989 PAS fold KI609_08565 PF00512 His Kinase A (phospho-acceptor) domain KI609_08565 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KI609_08570 PF00158 Sigma-54 interaction domain KI609_08570 PF00072 Response regulator receiver domain KI609_08570 PF02954 Bacterial regulatory protein, Fis family KI609_08580 PF03372 Endonuclease/Exonuclease/phosphatase family KI609_08585 PF00186 Dihydrofolate reductase KI609_08595 PF00303 Thymidylate synthase KI609_08605 PF00528 Binding-protein-dependent transport system inner membrane component KI609_08610 PF00528 Binding-protein-dependent transport system inner membrane component KI609_08615 PF08402 TOBE domain KI609_08615 PF00005 ABC transporter KI609_08620 PF00106 short chain dehydrogenase KI609_08625 PF08125 Mannitol dehydrogenase C-terminal domain KI609_08625 PF01232 Mannitol dehydrogenase Rossmann domain KI609_08630 PF12833 Helix-turn-helix domain KI609_08635 PF00294 pfkB family carbohydrate kinase KI609_08660 PF02913 FAD linked oxidases, C-terminal domain KI609_08660 PF01565 FAD binding domain KI609_08670 PF03631 Virulence factor BrkB KI609_08680 PF00561 alpha/beta hydrolase fold KI609_08680 PF08386 TAP-like protein KI609_08685 PF01053 Cys/Met metabolism PLP-dependent enzyme KI609_08695 PF13426 PAS domain KI609_08695 PF00990 Diguanylate cyclase, GGDEF domain KI609_08695 PF00563 EAL domain KI609_08700 PF01264 Chorismate synthase KI609_08705 PF03477 ATP cone domain KI609_08710 PF00464 Serine hydroxymethyltransferase KI609_08715 PF11873 Membrane-bound lytic murein transglycosylase C, N-terminal domain KI609_08715 PF01464 Transglycosylase SLT domain KI609_08735 PF00575 S1 RNA binding domain KI609_08735 PF17876 Cold shock domain KI609_08735 PF08461 Ribonuclease R winged-helix domain KI609_08735 PF00773 RNB domain KI609_08735 PF08206 Ribonuclease B OB domain KI609_08740 PF03853 YjeF-related protein N-terminus KI609_08740 PF01256 Carbohydrate kinase KI609_08745 PF01266 FAD dependent oxidoreductase KI609_08750 PF01425 Amidase KI609_08755 PF00318 Ribosomal protein S2 KI609_08760 PF00889 Elongation factor TS KI609_08765 PF00696 Amino acid kinase family KI609_08770 PF01765 Ribosome recycling factor KI609_08775 PF01255 Putative undecaprenyl diphosphate synthase KI609_08785 PF13288 DXP reductoisomerase C-terminal domain KI609_08785 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase KI609_08785 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain KI609_08790 PF02163 Peptidase family M50 KI609_08790 PF17820 PDZ domain KI609_08795 PF01103 Surface antigen KI609_08795 PF07244 Surface antigen variable number repeat KI609_08805 PF14602 Hexapeptide repeat of succinyl-transferase KI609_08805 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD KI609_08805 PF00132 Bacterial transferase hexapeptide (six repeats) KI609_08810 PF07977 FabA-like domain KI609_08815 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 KI609_08815 PF00132 Bacterial transferase hexapeptide (six repeats) KI609_08820 PF02684 Lipid-A-disaccharide synthetase KI609_08825 PF01351 Ribonuclease HII KI609_08830 PF00588 SpoU rRNA Methylase family KI609_08830 PF08032 RNA 2'-O ribose methyltransferase substrate binding KI609_08835 PF00117 Glutamine amidotransferase class-I KI609_08835 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain KI609_08840 PF02142 MGS-like domain KI609_08840 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain KI609_08840 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain KI609_08845 PF01272 Transcription elongation factor, GreA/GreB, C-term KI609_08845 PF03449 Transcription elongation factor, N-terminal KI609_08860 PF01985 CRS1 / YhbY (CRM) domain KI609_08865 PF01728 FtsJ-like methyltransferase KI609_08870 PF17862 AAA+ lid domain KI609_08870 PF00004 ATPase family associated with various cellular activities (AAA) KI609_08870 PF06480 FtsH Extracellular KI609_08870 PF01434 Peptidase family M41 KI609_08875 PF00809 Pterin binding enzyme KI609_08880 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I KI609_08880 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II KI609_08880 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III KI609_08880 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain KI609_08885 PF03707 Bacterial signalling protein N terminal repeat KI609_08885 PF00563 EAL domain KI609_08885 PF00990 Diguanylate cyclase, GGDEF domain KI609_08900 PF13439 Glycosyltransferase Family 4 KI609_08900 PF00534 Glycosyl transferases group 1 KI609_08905 PF02503 Polyphosphate kinase middle domain KI609_08905 PF13090 Polyphosphate kinase C-terminal domain 2 KI609_08905 PF17941 Polyphosphate kinase C-terminal domain 1 KI609_08905 PF13089 Polyphosphate kinase N-terminal domain KI609_08920 PF02541 Ppx/GppA phosphatase family KI609_08925 PF12849 PBP superfamily domain KI609_08930 PF00528 Binding-protein-dependent transport system inner membrane component KI609_08935 PF00528 Binding-protein-dependent transport system inner membrane component KI609_08940 PF00005 ABC transporter KI609_08945 PF01895 PhoU domain KI609_08950 PF00072 Response regulator receiver domain KI609_08950 PF00486 Transcriptional regulatory protein, C terminal KI609_08955 PF00989 PAS fold KI609_08955 PF11808 Phosphate regulon sensor protein PhoR KI609_08955 PF00512 His Kinase A (phospho-acceptor) domain KI609_08955 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KI609_08960 PF01554 MatE KI609_08970 PF01197 Ribosomal protein L31 KI609_08975 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain KI609_08975 PF07497 Rho termination factor, RNA-binding domain KI609_08975 PF07498 Rho termination factor, N-terminal domain KI609_08980 PF00085 Thioredoxin KI609_08990 PF13361 UvrD-like helicase C-terminal domain KI609_08990 PF12705 PD-(D/E)XK nuclease superfamily KI609_08990 PF00580 UvrD/REP helicase N-terminal domain KI609_09000 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KI609_09000 PF03466 LysR substrate binding domain KI609_09015 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KI609_09015 PF03466 LysR substrate binding domain KI609_09025 PF07992 Pyridine nucleotide-disulphide oxidoreductase KI609_09040 PF03466 LysR substrate binding domain KI609_09040 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KI609_09055 PF05598 Transposase domain (DUF772) KI609_09055 PF01609 Transposase DDE domain KI609_09075 PF00665 Integrase core domain KI609_09075 PF13936 Helix-turn-helix domain KI609_09085 PF00696 Amino acid kinase family KI609_09090 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain KI609_09090 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain KI609_09100 PF03606 C4-dicarboxylate anaerobic carrier KI609_09110 PF05362 Lon protease (S16) C-terminal proteolytic domain KI609_09110 PF00004 ATPase family associated with various cellular activities (AAA) KI609_09110 PF02190 ATP-dependent protease La (LON) substrate-binding domain KI609_09150 PF12161 HsdM N-terminal domain KI609_09150 PF02384 N-6 DNA Methylase KI609_09165 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) KI609_09165 PF18766 SWI2/SNF2 ATPase KI609_09165 PF11867 Domain of unknown function (DUF3387) KI609_09195 PF00700 Bacterial flagellin C-terminal helical region KI609_09195 PF00669 Bacterial flagellin N-terminal helical region KI609_09205 PF01609 Transposase DDE domain KI609_09205 PF05598 Transposase domain (DUF772) KI609_09215 PF00480 ROK family KI609_09220 PF00005 ABC transporter KI609_09225 PF02653 Branched-chain amino acid transport system / permease component KI609_09230 PF13407 Periplasmic binding protein domain KI609_09240 PF02894 Oxidoreductase family, C-terminal alpha/beta domain KI609_09240 PF01408 Oxidoreductase family, NAD-binding Rossmann fold KI609_09255 PF07963 Prokaryotic N-terminal methylation motif KI609_09255 PF00114 Pilin (bacterial filament) KI609_09275 PF03958 Bacterial type II/III secretion system short domain KI609_09275 PF00263 Bacterial type II and III secretion system protein KI609_09285 PF13401 AAA domain KI609_09285 PF01471 Putative peptidoglycan binding domain KI609_09290 PF00437 Type II/IV secretion system protein KI609_09290 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain KI609_09295 PF00482 Type II secretion system (T2SS), protein F KI609_09335 PF00155 Aminotransferase class I and II KI609_09335 PF00392 Bacterial regulatory proteins, gntR family KI609_09340 PF00034 Cytochrome c KI609_09345 PF00034 Cytochrome c KI609_09345 PF13442 Cytochrome C oxidase, cbb3-type, subunit III KI609_09355 PF00176 SNF2 family N-terminal domain KI609_09355 PF00271 Helicase conserved C-terminal domain KI609_09355 PF12419 SNF2 Helicase protein KI609_09360 PF02576 RimP N-terminal domain KI609_09365 PF00575 S1 RNA binding domain KI609_09365 PF08529 NusA N-terminal domain KI609_09365 PF13184 NusA-like KH domain KI609_09370 PF11987 Translation-initiation factor 2 KI609_09370 PF08364 Bacterial translation initiation factor IF-2 associated region KI609_09370 PF04760 Translation initiation factor IF-2, N-terminal region KI609_09370 PF00009 Elongation factor Tu GTP binding domain KI609_09375 PF02033 Ribosome-binding factor A KI609_09380 PF16198 tRNA pseudouridylate synthase B C-terminal domain KI609_09380 PF01509 TruB family pseudouridylate synthase (N terminal domain) KI609_09385 PF03144 Elongation factor Tu domain 2 KI609_09385 PF00679 Elongation factor G C-terminus KI609_09385 PF00009 Elongation factor Tu GTP binding domain KI609_09395 PF00378 Enoyl-CoA hydratase/isomerase KI609_09405 PF04542 Sigma-70 region 2 KI609_09405 PF08281 Sigma-70, region 4 KI609_09420 PF01668 SmpB protein KI609_09425 PF03364 Polyketide cyclase / dehydrase and lipid transport KI609_09430 PF03658 RnfH family Ubiquitin KI609_09440 PF00571 CBS domain KI609_09440 PF00478 IMP dehydrogenase / GMP reductase domain KI609_09445 PF00117 Glutamine amidotransferase class-I KI609_09445 PF00958 GMP synthase C terminal domain KI609_09445 PF02540 NAD synthase KI609_09450 PF13356 Arm DNA-binding domain KI609_09450 PF00589 Phage integrase family KI609_09470 PF13545 Crp-like helix-turn-helix domain KI609_09470 PF00027 Cyclic nucleotide-binding domain KI609_09485 PF00593 TonB dependent receptor KI609_09485 PF07715 TonB-dependent Receptor Plug Domain KI609_09490 PF11965 Domain of unknown function (DUF3479) KI609_09490 PF02514 CobN/Magnesium Chelatase KI609_09505 PF00528 Binding-protein-dependent transport system inner membrane component KI609_09510 PF00005 ABC transporter KI609_09520 PF00005 ABC transporter KI609_09520 PF06472 ABC transporter transmembrane region 2 KI609_09525 PF07715 TonB-dependent Receptor Plug Domain KI609_09525 PF07660 Secretin and TonB N terminus short domain KI609_09525 PF00593 TonB dependent receptor KI609_09545 PF02203 Tar ligand binding domain homologue KI609_09545 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain KI609_09545 PF00672 HAMP domain KI609_09550 PF00563 EAL domain KI609_09550 PF00990 Diguanylate cyclase, GGDEF domain KI609_09550 PF03707 Bacterial signalling protein N terminal repeat KI609_09555 PF00072 Response regulator receiver domain KI609_09555 PF00486 Transcriptional regulatory protein, C terminal KI609_09560 PF07568 Histidine kinase KI609_09560 PF12282 Signal transduction histidine kinase KI609_09560 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KI609_09585 PF00216 Bacterial DNA-binding protein KI609_09605 PF06067 Domain of unknown function (DUF932) KI609_09610 PF02195 ParB-like nuclease domain KI609_09620 PF03472 Autoinducer binding domain KI609_09620 PF00196 Bacterial regulatory proteins, luxR family KI609_09630 PF00765 Autoinducer synthase KI609_09675 PF05284 Protein of unknown function (DUF736) KI609_09680 PF01381 Helix-turn-helix KI609_09705 PF13614 AAA domain KI609_09720 PF10502 Signal peptidase, peptidase S26 KI609_09730 PF00155 Aminotransferase class I and II KI609_09730 PF00392 Bacterial regulatory proteins, gntR family KI609_09735 PF03594 Benzoate membrane transport protein KI609_09740 PF01168 Alanine racemase, N-terminal domain KI609_09745 PF00117 Glutamine amidotransferase class-I KI609_09750 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KI609_09750 PF03459 TOBE domain KI609_09755 PF07715 TonB-dependent Receptor Plug Domain KI609_09755 PF00593 TonB dependent receptor KI609_09775 PF01032 FecCD transport family KI609_09780 PF00005 ABC transporter KI609_09785 PF13649 Methyltransferase domain KI609_09795 PF01032 FecCD transport family KI609_09800 PF00005 ABC transporter KI609_09825 PF01618 MotA/TolQ/ExbB proton channel family KI609_09830 PF02472 Biopolymer transport protein ExbD/TolR KI609_09840 PF00528 Binding-protein-dependent transport system inner membrane component KI609_09845 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain KI609_09845 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain KI609_09850 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KI609_09850 PF03466 LysR substrate binding domain KI609_09870 PF00145 C-5 cytosine-specific DNA methylase KI609_09885 PF13361 UvrD-like helicase C-terminal domain KI609_09885 PF00580 UvrD/REP helicase N-terminal domain KI609_09940 PF01145 SPFH domain / Band 7 family KI609_09950 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain KI609_09950 PF01276 Orn/Lys/Arg decarboxylase, major domain KI609_09950 PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain KI609_09955 PF01068 ATP dependent DNA ligase domain KI609_09955 PF14743 DNA ligase OB-like domain KI609_09965 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle KI609_09970 PF00528 Binding-protein-dependent transport system inner membrane component KI609_09985 PF00528 Binding-protein-dependent transport system inner membrane component KI609_09985 PF12911 N-terminal TM domain of oligopeptide transport permease C KI609_09990 PF00005 ABC transporter KI609_09990 PF08352 Oligopeptide/dipeptide transporter, C-terminal region KI609_09995 PF08212 Lipocalin-like domain KI609_10020 PF03466 LysR substrate binding domain KI609_10020 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KI609_10035 PF03401 Tripartite tricarboxylate transporter family receptor KI609_10045 PF00665 Integrase core domain KI609_10045 PF13936 Helix-turn-helix domain KI609_10070 PF01619 Proline dehydrogenase KI609_10070 PF14850 DNA-binding domain of Proline dehydrogenase KI609_10070 PF18327 Proline utilization A proline dehydrogenase N-terminal domain KI609_10070 PF00171 Aldehyde dehydrogenase family KI609_10075 PF01037 Lrp/AsnC ligand binding domain KI609_10085 PF05958 tRNA (Uracil-5-)-methyltransferase KI609_10095 PF01027 Inhibitor of apoptosis-promoting Bax1 KI609_10100 PF03928 Haem-degrading KI609_10110 PF02472 Biopolymer transport protein ExbD/TolR KI609_10115 PF01618 MotA/TolQ/ExbB proton channel family KI609_10130 PF01070 FMN-dependent dehydrogenase KI609_10135 PF13640 2OG-Fe(II) oxygenase superfamily KI609_10135 PF18331 PKHD-type hydroxylase C-terminal domain KI609_10140 PF07715 TonB-dependent Receptor Plug Domain KI609_10140 PF00593 TonB dependent receptor KI609_10150 PF03737 Aldolase/RraA KI609_10165 PF00463 Isocitrate lyase family KI609_10170 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) KI609_10170 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain KI609_10170 PF02824 TGS domain KI609_10170 PF03129 Anticodon binding domain KI609_10175 PF00707 Translation initiation factor IF-3, C-terminal domain KI609_10175 PF05198 Translation initiation factor IF-3, N-terminal domain KI609_10180 PF01632 Ribosomal protein L35 KI609_10185 PF00453 Ribosomal protein L20 KI609_10190 PF01409 tRNA synthetases class II core domain (F) KI609_10190 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain KI609_10195 PF03484 tRNA synthetase B5 domain KI609_10195 PF03147 Ferredoxin-fold anticodon binding domain KI609_10195 PF01588 Putative tRNA binding domain KI609_10195 PF03483 B3/4 domain KI609_10195 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain KI609_10200 PF00216 Bacterial DNA-binding protein KI609_10205 PF13411 MerR HTH family regulatory protein KI609_10235 PF00316 Fructose-1-6-bisphosphatase, N-terminal domain KI609_10240 PF11940 Domain of unknown function (DUF3458) Ig-like fold KI609_10240 PF17432 Domain of unknown function (DUF3458_C) ARM repeats KI609_10240 PF01433 Peptidase family M1 domain KI609_10245 PF13419 Haloacid dehalogenase-like hydrolase KI609_10295 PF00561 alpha/beta hydrolase fold KI609_10300 PF00248 Aldo/keto reductase family KI609_10310 PF03401 Tripartite tricarboxylate transporter family receptor KI609_10315 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KI609_10315 PF03466 LysR substrate binding domain KI609_10320 PF04073 Aminoacyl-tRNA editing domain KI609_10325 PF02660 Glycerol-3-phosphate acyltransferase KI609_10340 PF04461 Protein of unknown function (DUF520) KI609_10345 PF01565 FAD binding domain KI609_10345 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain KI609_10350 PF02592 Putative vitamin uptake transporter KI609_10355 PF00764 Arginosuccinate synthase KI609_10360 PF06865 Pyrimidine/purine nucleoside phosphorylase KI609_10370 PF03960 ArsC family KI609_10375 PF02875 Mur ligase family, glutamate ligase domain KI609_10375 PF08245 Mur ligase middle domain KI609_10390 PF00156 Phosphoribosyl transferase domain KI609_10395 PF00749 tRNA synthetases class I (E and Q), catalytic domain KI609_10445 PF01695 IstB-like ATP binding protein KI609_10450 PF00665 Integrase core domain KI609_10460 PF00106 short chain dehydrogenase KI609_10465 PF13416 Bacterial extracellular solute-binding protein KI609_10475 PF09361 Phasin protein KI609_10480 PF00850 Histone deacetylase domain KI609_10490 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family KI609_10490 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain KI609_10500 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain KI609_10500 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain KI609_10505 PF02646 RmuC family KI609_10515 PF03641 Possible lysine decarboxylase KI609_10520 PF00067 Cytochrome P450 KI609_10525 PF02537 CrcB-like protein, Camphor Resistance (CrcB) KI609_10530 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component KI609_10555 PF12911 N-terminal TM domain of oligopeptide transport permease C KI609_10555 PF00528 Binding-protein-dependent transport system inner membrane component KI609_10560 PF00528 Binding-protein-dependent transport system inner membrane component KI609_10565 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle KI609_10570 PF08352 Oligopeptide/dipeptide transporter, C-terminal region KI609_10570 PF00005 ABC transporter KI609_10580 PF01968 Hydantoinase/oxoprolinase KI609_10580 PF05378 Hydantoinase/oxoprolinase N-terminal region KI609_10590 PF04066 Multiple resistance and pH regulation protein F (MrpF / PhaF) KI609_10595 PF01899 Na+/H+ ion antiporter subunit KI609_10600 PF00361 Proton-conducting membrane transporter KI609_10605 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L KI609_10610 PF13244 Domain of unknown function (DUF4040) KI609_10610 PF04039 Domain related to MnhB subunit of Na+/H+ antiporter KI609_10610 PF00361 Proton-conducting membrane transporter KI609_10610 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus KI609_10620 PF18073 Rubredoxin metal binding domain KI609_10630 PF00216 Bacterial DNA-binding protein KI609_10635 PF00575 S1 RNA binding domain KI609_10640 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) KI609_10645 PF02153 Prephenate dehydrogenase KI609_10650 PF00800 Prephenate dehydratase KI609_10650 PF01817 Chorismate mutase type II KI609_10650 PF01842 ACT domain KI609_10655 PF00266 Aminotransferase class-V KI609_10660 PF03989 DNA gyrase C-terminal domain, beta-propeller KI609_10660 PF00521 DNA gyrase/topoisomerase IV, subunit A KI609_10665 PF00691 OmpA family KI609_10675 PF13419 Haloacid dehalogenase-like hydrolase KI609_10685 PF12167 Arm DNA-binding domain KI609_10685 PF00589 Phage integrase family KI609_10830 PF00072 Response regulator receiver domain KI609_10830 PF00486 Transcriptional regulatory protein, C terminal KI609_10835 PF00512 His Kinase A (phospho-acceptor) domain KI609_10835 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KI609_10835 PF00672 HAMP domain KI609_10840 PF16868 NMT1-like family KI609_10845 PF00528 Binding-protein-dependent transport system inner membrane component KI609_10850 PF00005 ABC transporter KI609_10855 PF00392 Bacterial regulatory proteins, gntR family KI609_10855 PF07702 UTRA domain KI609_10860 PF00221 Aromatic amino acid lyase KI609_10865 PF17392 Urocanase C-terminal domain KI609_10865 PF17391 Urocanase N-terminal domain KI609_10865 PF01175 Urocanase Rossmann-like domain KI609_10875 PF00497 Bacterial extracellular solute-binding proteins, family 3 KI609_10880 PF00528 Binding-protein-dependent transport system inner membrane component KI609_10885 PF00005 ABC transporter KI609_10895 PF05962 HutD KI609_10900 PF01979 Amidohydrolase family KI609_10920 PF02666 Phosphatidylserine decarboxylase KI609_10925 PF09286 Pro-kumamolisin, activation domain KI609_10925 PF00082 Subtilase family KI609_10930 PF00005 ABC transporter KI609_10935 PF12399 Branched-chain amino acid ATP-binding cassette transporter KI609_10935 PF00005 ABC transporter KI609_10945 PF02653 Branched-chain amino acid transport system / permease component KI609_10955 PF01368 DHH family KI609_10955 PF02272 DHHA1 domain KI609_10955 PF01743 Poly A polymerase head domain KI609_10955 PF00571 CBS domain KI609_10955 PF12627 Probable RNA and SrmB- binding site of polymerase A KI609_10960 PF01176 Translation initiation factor 1A / IF-1 KI609_10985 PF04279 Intracellular septation protein A KI609_10990 PF01641 SelR domain KI609_10995 PF02696 Uncharacterized ACR, YdiU/UPF0061 family KI609_11000 PF13545 Crp-like helix-turn-helix domain KI609_11000 PF00027 Cyclic nucleotide-binding domain KI609_11005 PF00501 AMP-binding enzyme KI609_11005 PF13193 AMP-binding enzyme C-terminal domain KI609_11015 PF02653 Branched-chain amino acid transport system / permease component KI609_11025 PF12399 Branched-chain amino acid ATP-binding cassette transporter KI609_11025 PF00005 ABC transporter KI609_11030 PF00005 ABC transporter KI609_11035 PF06100 MCRA family KI609_11040 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain KI609_11040 PF00378 Enoyl-CoA hydratase/isomerase KI609_11040 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain KI609_11045 PF00108 Thiolase, N-terminal domain KI609_11045 PF02803 Thiolase, C-terminal domain KI609_11050 PF00441 Acyl-CoA dehydrogenase, C-terminal domain KI609_11050 PF12806 Acetyl-CoA dehydrogenase C-terminal like KI609_11050 PF02770 Acyl-CoA dehydrogenase, middle domain KI609_11050 PF02771 Acyl-CoA dehydrogenase, N-terminal domain KI609_11070 PF16884 N-terminal domain of oxidoreductase KI609_11070 PF00107 Zinc-binding dehydrogenase KI609_11075 PF13673 Acetyltransferase (GNAT) domain KI609_11080 PF18158 Adaptive response protein AidB N-terminal domain KI609_11080 PF00441 Acyl-CoA dehydrogenase, C-terminal domain KI609_11080 PF02770 Acyl-CoA dehydrogenase, middle domain KI609_11090 PF00106 short chain dehydrogenase KI609_11095 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain KI609_11095 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain KI609_11105 PF10091 Putative glucoamylase KI609_11105 PF06165 Glycosyltransferase family 36 KI609_11105 PF17167 Glycosyl hydrolase 36 superfamily, catalytic domain KI609_11125 PF03707 Bacterial signalling protein N terminal repeat KI609_11125 PF00990 Diguanylate cyclase, GGDEF domain KI609_11125 PF00563 EAL domain KI609_11130 PF01590 GAF domain KI609_11130 PF00563 EAL domain KI609_11130 PF00990 Diguanylate cyclase, GGDEF domain KI609_11130 PF00360 Phytochrome region KI609_11135 PF07690 Major Facilitator Superfamily KI609_11140 PF07690 Major Facilitator Superfamily KI609_11145 PF01810 LysE type translocator KI609_11160 PF00155 Aminotransferase class I and II KI609_11160 PF00392 Bacterial regulatory proteins, gntR family KI609_11165 PF02627 Carboxymuconolactone decarboxylase family KI609_11200 PF00196 Bacterial regulatory proteins, luxR family KI609_11200 PF00072 Response regulator receiver domain KI609_11205 PF07730 Histidine kinase KI609_11205 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KI609_11205 PF13185 GAF domain KI609_11205 PF13492 GAF domain KI609_11210 PF17674 HHH domain KI609_11210 PF00575 S1 RNA binding domain KI609_11210 PF09371 Tex-like protein N-terminal domain KI609_11210 PF16921 Tex protein YqgF-like domain KI609_11225 PF00990 Diguanylate cyclase, GGDEF domain KI609_11225 PF00563 EAL domain KI609_11225 PF03707 Bacterial signalling protein N terminal repeat KI609_11230 PF00465 Iron-containing alcohol dehydrogenase KI609_11240 PF07859 alpha/beta hydrolase fold KI609_11250 PF01571 Aminomethyltransferase folate-binding domain KI609_11255 PF02618 YceG-like family KI609_11260 PF02223 Thymidylate kinase KI609_11265 PF09115 DNA polymerase III, delta subunit, C terminal KI609_11275 PF01026 TatD related DNase KI609_11285 PF00664 ABC transporter transmembrane region KI609_11285 PF00005 ABC transporter KI609_11290 PF07676 WD40-like Beta Propeller Repeat KI609_11290 PF04052 TolB amino-terminal domain KI609_11295 PF00691 OmpA family KI609_11305 PF00899 ThiF family KI609_11320 PF02779 Transketolase, pyrimidine binding domain KI609_11320 PF16870 2-oxoglutarate dehydrogenase C-terminal KI609_11320 PF16078 2-oxoglutarate dehydrogenase N-terminus KI609_11320 PF00676 Dehydrogenase E1 component KI609_11325 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) KI609_11325 PF02817 e3 binding domain KI609_11325 PF00364 Biotin-requiring enzyme KI609_11330 PF07992 Pyridine nucleotide-disulphide oxidoreductase KI609_11330 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain KI609_11335 PF03969 AFG1-like ATPase KI609_11350 PF04851 Type III restriction enzyme, res subunit KI609_11350 PF13307 Helicase C-terminal domain KI609_11355 PF13525 Outer membrane lipoprotein KI609_11360 PF07733 Bacterial DNA polymerase III alpha NTPase domain KI609_11360 PF17657 Bacterial DNA polymerase III alpha subunit finger domain KI609_11360 PF14579 Helix-hairpin-helix motif KI609_11360 PF02811 PHP domain KI609_11360 PF01336 OB-fold nucleic acid binding domain KI609_11365 PF02617 ATP-dependent Clp protease adaptor protein ClpS KI609_11370 PF02861 Clp amino terminal domain, pathogenicity island component KI609_11370 PF17871 AAA lid domain KI609_11370 PF10431 C-terminal, D2-small domain, of ClpB protein KI609_11370 PF07724 AAA domain (Cdc48 subfamily) KI609_11370 PF00004 ATPase family associated with various cellular activities (AAA) KI609_11380 PF13406 Transglycosylase SLT domain KI609_11385 PF00929 Exonuclease KI609_11385 PF08411 Exonuclease C-terminal KI609_11390 PF01053 Cys/Met metabolism PLP-dependent enzyme KI609_11395 PF00069 Protein kinase domain KI609_11395 PF03793 PASTA domain KI609_11400 PF07670 Nucleoside recognition KI609_11405 PF01709 Transcriptional regulator KI609_11410 PF00226 DnaJ domain KI609_11410 PF01556 DnaJ C terminal domain KI609_11410 PF00684 DnaJ central domain KI609_11430 PF00990 Diguanylate cyclase, GGDEF domain KI609_11445 PF00291 Pyridoxal-phosphate dependent enzyme KI609_11450 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain KI609_11450 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain KI609_11450 PF00378 Enoyl-CoA hydratase/isomerase KI609_11460 PF05872 Bacterial protein of unknown function (DUF853) KI609_11465 PF01709 Transcriptional regulator KI609_11470 PF02844 Phosphoribosylglycinamide synthetase, N domain KI609_11470 PF02843 Phosphoribosylglycinamide synthetase, C domain KI609_11470 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain KI609_11475 PF01218 Coproporphyrinogen III oxidase KI609_11485 PF02590 Predicted SPOUT methyltransferase KI609_11490 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain KI609_11490 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain KI609_11500 PF00701 Dihydrodipicolinate synthetase family KI609_11505 PF03401 Tripartite tricarboxylate transporter family receptor KI609_11510 PF10282 Lactonase, 7-bladed beta-propeller KI609_11515 PF03401 Tripartite tricarboxylate transporter family receptor KI609_11525 PF00664 ABC transporter transmembrane region KI609_11525 PF00005 ABC transporter KI609_11535 PF03707 Bacterial signalling protein N terminal repeat KI609_11535 PF00990 Diguanylate cyclase, GGDEF domain KI609_11535 PF00563 EAL domain KI609_11545 PF03401 Tripartite tricarboxylate transporter family receptor KI609_11550 PF03401 Tripartite tricarboxylate transporter family receptor KI609_11555 PF02954 Bacterial regulatory protein, Fis family KI609_11555 PF06506 Propionate catabolism activator KI609_11555 PF00158 Sigma-54 interaction domain KI609_11565 PF01590 GAF domain KI609_11565 PF00563 EAL domain KI609_11565 PF00990 Diguanylate cyclase, GGDEF domain KI609_11565 PF00360 Phytochrome region KI609_11570 PF04303 PrpF protein KI609_11575 PF00694 Aconitase C-terminal domain KI609_11575 PF00330 Aconitase family (aconitate hydratase) KI609_11580 PF00285 Citrate synthase, C-terminal domain KI609_11590 PF01381 Helix-turn-helix KI609_11590 PF06114 IrrE N-terminal-like domain KI609_11590 PF09856 Predicted transcriptional regulator (DUF2083) KI609_11595 PF03707 Bacterial signalling protein N terminal repeat KI609_11595 PF00990 Diguanylate cyclase, GGDEF domain KI609_11595 PF00563 EAL domain KI609_11600 PF06470 SMC proteins Flexible Hinge Domain KI609_11600 PF02463 RecF/RecN/SMC N terminal domain KI609_11610 PF03120 NAD-dependent DNA ligase OB-fold domain KI609_11610 PF12826 Helix-hairpin-helix motif KI609_11610 PF01653 NAD-dependent DNA ligase adenylation domain KI609_11610 PF03119 NAD-dependent DNA ligase C4 zinc finger domain KI609_11610 PF00533 BRCA1 C Terminus (BRCT) domain KI609_11615 PF01734 Patatin-like phospholipase KI609_11620 PF00912 Transglycosylase KI609_11620 PF00905 Penicillin binding protein transpeptidase domain KI609_11625 PF04542 Sigma-70 region 2 KI609_11625 PF08281 Sigma-70, region 4 KI609_11650 PF01557 Fumarylacetoacetate (FAA) hydrolase family KI609_11660 PF13417 Glutathione S-transferase, N-terminal domain KI609_11665 PF02578 Multi-copper polyphenol oxidoreductase laccase KI609_11675 PF07167 Poly-beta-hydroxybutyrate polymerase (PhaC) N-terminus KI609_11680 PF02803 Thiolase, C-terminal domain KI609_11680 PF00108 Thiolase, N-terminal domain KI609_11685 PF00106 short chain dehydrogenase KI609_11690 PF00005 ABC transporter KI609_11690 PF12848 ABC transporter KI609_11695 PF05175 Methyltransferase small domain KI609_11700 PF07687 Peptidase dimerisation domain KI609_11700 PF01546 Peptidase family M20/M25/M40 KI609_11705 PF00437 Type II/IV secretion system protein KI609_11710 PF14805 Tetrahydrodipicolinate N-succinyltransferase N-terminal KI609_11710 PF14602 Hexapeptide repeat of succinyl-transferase KI609_11715 PF00155 Aminotransferase class I and II KI609_11720 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain KI609_11720 PF02203 Tar ligand binding domain homologue KI609_11720 PF00672 HAMP domain KI609_11725 PF04060 Putative Fe-S cluster KI609_11740 PF00563 EAL domain KI609_11740 PF00990 Diguanylate cyclase, GGDEF domain KI609_11740 PF03707 Bacterial signalling protein N terminal repeat KI609_11745 PF01207 Dihydrouridine synthase (Dus) KI609_11755 PF01037 Lrp/AsnC ligand binding domain KI609_11765 PF00501 AMP-binding enzyme KI609_11780 PF00392 Bacterial regulatory proteins, gntR family KI609_11780 PF07729 FCD domain KI609_11785 PF02310 B12 binding domain KI609_11785 PF01642 Methylmalonyl-CoA mutase KI609_11795 PF01039 Carboxyl transferase domain KI609_11800 PF02785 Biotin carboxylase C-terminal domain KI609_11800 PF00289 Biotin carboxylase, N-terminal domain KI609_11800 PF18140 Propionyl-coenzyme A carboxylase BT domain KI609_11800 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain KI609_11800 PF00364 Biotin-requiring enzyme KI609_11815 PF04055 Radical SAM superfamily KI609_11815 PF06968 Biotin and Thiamin Synthesis associated domain KI609_11820 PF00072 Response regulator receiver domain KI609_11825 PF00072 Response regulator receiver domain KI609_11825 PF01627 Hpt domain KI609_11825 PF00512 His Kinase A (phospho-acceptor) domain KI609_11825 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KI609_11825 PF00672 HAMP domain KI609_11825 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) KI609_11840 PF00581 Rhodanese-like domain KI609_11850 PF00753 Metallo-beta-lactamase superfamily KI609_11855 PF00581 Rhodanese-like domain KI609_11860 PF02321 Outer membrane efflux protein KI609_11870 PF07992 Pyridine nucleotide-disulphide oxidoreductase KI609_11875 PF00873 AcrB/AcrD/AcrF family KI609_11885 PF01022 Bacterial regulatory protein, arsR family KI609_11895 PF01554 MatE KI609_11920 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily KI609_11935 PF00080 Copper/zinc superoxide dismutase (SODC) KI609_11940 PF12804 MobA-like NTP transferase domain KI609_11940 PF00132 Bacterial transferase hexapeptide (six repeats) KI609_11950 PF01070 FMN-dependent dehydrogenase KI609_11960 PF00155 Aminotransferase class I and II KI609_11960 PF00392 Bacterial regulatory proteins, gntR family KI609_11965 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase KI609_11970 PF01799 [2Fe-2S] binding domain KI609_11970 PF00111 2Fe-2S iron-sulfur cluster binding domain KI609_11975 PF08359 YsiA-like protein, C-terminal region KI609_11975 PF00440 Bacterial regulatory proteins, tetR family KI609_11980 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region KI609_11980 PF01243 Pyridoxamine 5'-phosphate oxidase KI609_11985 PF01047 MarR family KI609_11990 PF02321 Outer membrane efflux protein KI609_11995 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion KI609_11995 PF00529 HlyD membrane-fusion protein of T1SS KI609_12000 PF07690 Major Facilitator Superfamily KI609_12015 PF03466 LysR substrate binding domain KI609_12015 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KI609_12020 PF00171 Aldehyde dehydrogenase family KI609_12030 PF00441 Acyl-CoA dehydrogenase, C-terminal domain KI609_12030 PF02770 Acyl-CoA dehydrogenase, middle domain KI609_12030 PF02771 Acyl-CoA dehydrogenase, N-terminal domain KI609_12040 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase KI609_12040 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase KI609_12045 PF00990 Diguanylate cyclase, GGDEF domain KI609_12045 PF00563 EAL domain KI609_12045 PF03707 Bacterial signalling protein N terminal repeat KI609_12050 PF00072 Response regulator receiver domain KI609_12055 PF00512 His Kinase A (phospho-acceptor) domain KI609_12055 PF00072 Response regulator receiver domain KI609_12055 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) KI609_12055 PF01627 Hpt domain KI609_12055 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KI609_12055 PF00672 HAMP domain KI609_12060 PF00180 Isocitrate/isopropylmalate dehydrogenase KI609_12075 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain KI609_12075 PF02777 Iron/manganese superoxide dismutases, C-terminal domain KI609_12080 PF13742 OB-fold nucleic acid binding domain KI609_12080 PF02601 Exonuclease VII, large subunit KI609_12085 PF01618 MotA/TolQ/ExbB proton channel family KI609_12090 PF02472 Biopolymer transport protein ExbD/TolR KI609_12095 PF03966 Trm112p-like protein KI609_12095 PF02606 Tetraacyldisaccharide-1-P 4'-kinase KI609_12100 PF03966 Trm112p-like protein KI609_12105 PF02348 Cytidylyltransferase KI609_12110 PF05191 Adenylate kinase, active site lid KI609_12115 PF00710 Asparaginase, N-terminal KI609_12115 PF17763 Glutaminase/Asparaginase C-terminal domain KI609_12120 PF01726 LexA DNA binding domain KI609_12120 PF00717 Peptidase S24-like KI609_12125 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain KI609_12125 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain KI609_12130 PF13458 Periplasmic binding protein KI609_12145 PF00883 Cytosol aminopeptidase family, catalytic domain KI609_12145 PF02789 Cytosol aminopeptidase family, N-terminal domain KI609_12165 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KI609_12165 PF03466 LysR substrate binding domain KI609_12170 PF00155 Aminotransferase class I and II KI609_12180 PF03814 Potassium-transporting ATPase A subunit KI609_12190 PF02669 K+-transporting ATPase, c chain KI609_12200 PF00072 Response regulator receiver domain KI609_12200 PF00486 Transcriptional regulatory protein, C terminal KI609_12210 PF02798 Glutathione S-transferase, N-terminal domain KI609_12215 PF00999 Sodium/hydrogen exchanger family KI609_12220 PF10150 Ribonuclease E/G family KI609_12220 PF00575 S1 RNA binding domain KI609_12225 PF02545 Maf-like protein KI609_12240 PF01734 Patatin-like phospholipase KI609_12265 PF00667 FAD binding domain KI609_12265 PF00258 Flavodoxin KI609_12265 PF00175 Oxidoreductase NAD-binding domain KI609_12270 PF02424 ApbE family KI609_12280 PF00563 EAL domain KI609_12280 PF00990 Diguanylate cyclase, GGDEF domain KI609_12280 PF03707 Bacterial signalling protein N terminal repeat KI609_12285 PF00593 TonB dependent receptor KI609_12285 PF07715 TonB-dependent Receptor Plug Domain KI609_12310 PF02687 FtsX-like permease family KI609_12310 PF12704 MacB-like periplasmic core domain KI609_12310 PF00005 ABC transporter KI609_12320 PF01625 Peptide methionine sulfoxide reductase KI609_12325 PF08362 YcdC-like protein, C-terminal region KI609_12325 PF00440 Bacterial regulatory proteins, tetR family KI609_12330 PF13533 Biotin-lipoyl like KI609_12335 PF00873 AcrB/AcrD/AcrF family KI609_12350 PF02321 Outer membrane efflux protein KI609_12355 PF01053 Cys/Met metabolism PLP-dependent enzyme KI609_12365 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) KI609_12365 PF00534 Glycosyl transferases group 1 KI609_12375 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I KI609_12375 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II KI609_12375 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III KI609_12375 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain KI609_12380 PF12833 Helix-turn-helix domain KI609_12380 PF00730 HhH-GPD superfamily base excision DNA repair protein KI609_12380 PF06029 AlkA N-terminal domain KI609_12380 PF02805 Metal binding domain of Ada KI609_12385 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain KI609_12385 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain KI609_12390 PF00892 EamA-like transporter family KI609_12395 PF00563 EAL domain KI609_12395 PF03707 Bacterial signalling protein N terminal repeat KI609_12395 PF00990 Diguanylate cyclase, GGDEF domain KI609_12405 PF13193 AMP-binding enzyme C-terminal domain KI609_12405 PF00501 AMP-binding enzyme KI609_12405 PF16177 Acetyl-coenzyme A synthetase N-terminus KI609_12420 PF00156 Phosphoribosyl transferase domain KI609_12425 PF02885 Glycosyl transferase family, helical bundle domain KI609_12425 PF00591 Glycosyl transferase family, a/b domain KI609_12425 PF07831 Pyrimidine nucleoside phosphorylase C-terminal domain KI609_12430 PF00877 NlpC/P60 family KI609_12455 PF03401 Tripartite tricarboxylate transporter family receptor KI609_12470 PF00271 Helicase conserved C-terminal domain KI609_12470 PF00176 SNF2 family N-terminal domain KI609_12470 PF04434 SWIM zinc finger KI609_12475 PF02805 Metal binding domain of Ada KI609_12475 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain KI609_12475 PF12833 Helix-turn-helix domain KI609_12475 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain KI609_12480 PF09859 Oxygenase, catalysing oxidative methylation of damaged DNA KI609_12485 PF13532 2OG-Fe(II) oxygenase superfamily KI609_12495 PF00563 EAL domain KI609_12495 PF00990 Diguanylate cyclase, GGDEF domain KI609_12495 PF00360 Phytochrome region KI609_12495 PF01590 GAF domain KI609_12505 PF00293 NUDIX domain KI609_12515 PF00441 Acyl-CoA dehydrogenase, C-terminal domain KI609_12515 PF02771 Acyl-CoA dehydrogenase, N-terminal domain KI609_12515 PF09317 Domain of unknown function (DUF1974) KI609_12520 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain KI609_12520 PF07992 Pyridine nucleotide-disulphide oxidoreductase KI609_12525 PF02817 e3 binding domain KI609_12525 PF00364 Biotin-requiring enzyme KI609_12525 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) KI609_12530 PF00456 Transketolase, thiamine diphosphate binding domain KI609_12530 PF17831 Pyruvate dehydrogenase E1 component middle domain KI609_12535 PF00512 His Kinase A (phospho-acceptor) domain KI609_12535 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KI609_12535 PF00989 PAS fold KI609_12540 PF00196 Bacterial regulatory proteins, luxR family KI609_12540 PF00072 Response regulator receiver domain KI609_12545 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain KI609_12545 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain KI609_12550 PF01432 Peptidase family M3 KI609_12560 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) KI609_12565 PF01180 Dihydroorotate dehydrogenase KI609_12585 PF01266 FAD dependent oxidoreductase KI609_12590 PF00850 Histone deacetylase domain KI609_12605 PF00929 Exonuclease KI609_12610 PF00111 2Fe-2S iron-sulfur cluster binding domain KI609_12615 PF00012 Hsp70 protein KI609_12620 PF07743 HSCB C-terminal oligomerisation domain KI609_12625 PF01521 Iron-sulphur cluster biosynthesis KI609_12630 PF01592 NifU-like N terminal domain KI609_12635 PF00266 Aminotransferase class-V KI609_12640 PF02082 Transcriptional regulator KI609_12645 PF12344 Ultra-violet resistance protein B KI609_12645 PF17757 UvrB interaction domain KI609_12645 PF04851 Type III restriction enzyme, res subunit KI609_12645 PF00271 Helicase conserved C-terminal domain KI609_12645 PF02151 UvrB/uvrC motif KI609_12650 PF00155 Aminotransferase class I and II KI609_12660 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase KI609_12665 PF02515 CoA-transferase family III KI609_12680 PF11842 Domain of unknown function (DUF3362) KI609_12680 PF04055 Radical SAM superfamily KI609_12680 PF08497 Radical SAM N-terminal KI609_12685 PF00583 Acetyltransferase (GNAT) family KI609_12685 PF01047 MarR family KI609_12695 PF09186 Domain of unknown function (DUF1949) KI609_12695 PF01205 Uncharacterized protein family UPF0029 KI609_12700 PF07992 Pyridine nucleotide-disulphide oxidoreductase KI609_12700 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain KI609_12710 PF01266 FAD dependent oxidoreductase KI609_12715 PF01425 Amidase KI609_12720 PF03401 Tripartite tricarboxylate transporter family receptor KI609_12725 PF00291 Pyridoxal-phosphate dependent enzyme KI609_12730 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KI609_12730 PF03466 LysR substrate binding domain KI609_12735 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain KI609_12735 PF13378 Enolase C-terminal domain-like KI609_12740 PF03401 Tripartite tricarboxylate transporter family receptor KI609_12745 PF00392 Bacterial regulatory proteins, gntR family KI609_12745 PF07729 FCD domain KI609_12755 PF07804 HipA-like C-terminal domain KI609_12755 PF13657 HipA N-terminal domain KI609_12765 PF07995 Glucose / Sorbosone dehydrogenase KI609_12775 PF02417 Chromate transporter KI609_12790 PF02146 Sir2 family KI609_12795 PF00588 SpoU rRNA Methylase family KI609_12795 PF08032 RNA 2'-O ribose methyltransferase substrate binding KI609_12800 PF00005 ABC transporter KI609_12805 PF13472 GDSL-like Lipase/Acylhydrolase family KI609_12820 PF01053 Cys/Met metabolism PLP-dependent enzyme KI609_12825 PF04972 BON domain KI609_12830 PF00916 Sulfate permease family KI609_12830 PF01740 STAS domain KI609_12835 PF00072 Response regulator receiver domain KI609_12835 PF00990 Diguanylate cyclase, GGDEF domain KI609_12840 PF10609 NUBPL iron-transfer P-loop NTPase KI609_12845 PF17773 UPF0176 acylphosphatase like domain KI609_12850 PF02678 Pirin KI609_12850 PF05726 Pirin C-terminal cupin domain KI609_12860 PF03358 NADPH-dependent FMN reductase KI609_12865 PF07681 DoxX KI609_12870 PF17954 Quercetinase C-terminal cupin domain KI609_12870 PF02678 Pirin KI609_12875 PF03466 LysR substrate binding domain KI609_12875 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KI609_12880 PF01593 Flavin containing amine oxidoreductase KI609_12885 PF00749 tRNA synthetases class I (E and Q), catalytic domain KI609_12890 PF02390 Putative methyltransferase KI609_12895 PF00990 Diguanylate cyclase, GGDEF domain KI609_12905 PF02272 DHHA1 domain KI609_12905 PF01411 tRNA synthetases class II (A) KI609_12905 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain KI609_12910 PF00701 Dihydrodipicolinate synthetase family KI609_12915 PF05544 Proline racemase KI609_12920 PF05430 S-adenosyl-L-methionine-dependent methyltransferase KI609_12920 PF01266 FAD dependent oxidoreductase KI609_12930 PF04324 BFD-like [2Fe-2S] binding domain KI609_12930 PF07992 Pyridine nucleotide-disulphide oxidoreductase KI609_12940 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component KI609_12945 PF03480 Bacterial extracellular solute-binding protein, family 7 KI609_12950 PF07729 FCD domain KI609_12950 PF00392 Bacterial regulatory proteins, gntR family KI609_12955 PF00155 Aminotransferase class I and II KI609_12960 PF00202 Aminotransferase class-III KI609_12965 PF08402 TOBE domain KI609_12965 PF00005 ABC transporter KI609_12975 PF00528 Binding-protein-dependent transport system inner membrane component KI609_12980 PF00528 Binding-protein-dependent transport system inner membrane component KI609_12985 PF00171 Aldehyde dehydrogenase family KI609_13030 PF01609 Transposase DDE domain KI609_13030 PF05598 Transposase domain (DUF772) KI609_13035 PF01609 Transposase DDE domain KI609_13035 PF05598 Transposase domain (DUF772) KI609_13055 PF13356 Arm DNA-binding domain KI609_13055 PF00589 Phage integrase family KI609_13065 PF00672 HAMP domain KI609_13065 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain KI609_13065 PF02203 Tar ligand binding domain homologue KI609_13070 PF00849 RNA pseudouridylate synthase KI609_13075 PF05170 AsmA family KI609_13080 PF07733 Bacterial DNA polymerase III alpha NTPase domain KI609_13080 PF02811 PHP domain KI609_13080 PF17657 Bacterial DNA polymerase III alpha subunit finger domain KI609_13080 PF14579 Helix-hairpin-helix motif KI609_13100 PF01144 Coenzyme A transferase KI609_13105 PF01144 Coenzyme A transferase KI609_13115 PF02627 Carboxymuconolactone decarboxylase family KI609_13120 PF00141 Peroxidase KI609_13125 PF08450 SMP-30/Gluconolactonase/LRE-like region KI609_13130 PF04909 Amidohydrolase KI609_13135 PF03401 Tripartite tricarboxylate transporter family receptor KI609_13140 PF03401 Tripartite tricarboxylate transporter family receptor KI609_13145 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain KI609_13145 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain KI609_13150 PF03737 Aldolase/RraA KI609_13155 PF03401 Tripartite tricarboxylate transporter family receptor KI609_13165 PF03401 Tripartite tricarboxylate transporter family receptor KI609_13195 PF01037 Lrp/AsnC ligand binding domain KI609_13200 PF03480 Bacterial extracellular solute-binding protein, family 7 KI609_13210 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component KI609_13210 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component KI609_13215 PF01571 Aminomethyltransferase folate-binding domain KI609_13215 PF08669 Glycine cleavage T-protein C-terminal barrel domain KI609_13220 PF01597 Glycine cleavage H-protein KI609_13225 PF02347 Glycine cleavage system P-protein KI609_13230 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase KI609_13230 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase KI609_13235 PF13411 MerR HTH family regulatory protein KI609_13250 PF00072 Response regulator receiver domain KI609_13250 PF13188 PAS domain KI609_13250 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KI609_13250 PF00512 His Kinase A (phospho-acceptor) domain KI609_13250 PF08448 PAS fold KI609_13255 PF00849 RNA pseudouridylate synthase KI609_13260 PF00106 short chain dehydrogenase KI609_13265 PF02803 Thiolase, C-terminal domain KI609_13265 PF00108 Thiolase, N-terminal domain KI609_13270 PF03401 Tripartite tricarboxylate transporter family receptor KI609_13275 PF00582 Universal stress protein family KI609_13290 PF00563 EAL domain KI609_13290 PF00990 Diguanylate cyclase, GGDEF domain KI609_13290 PF03707 Bacterial signalling protein N terminal repeat KI609_13295 PF07238 PilZ domain KI609_13300 PF13193 AMP-binding enzyme C-terminal domain KI609_13300 PF00501 AMP-binding enzyme KI609_13310 PF00270 DEAD/DEAH box helicase KI609_13310 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold KI609_13310 PF00271 Helicase conserved C-terminal domain KI609_13310 PF11898 Domain of unknown function (DUF3418) KI609_13310 PF04408 Helicase associated domain (HA2) KI609_13315 PF00696 Amino acid kinase family KI609_13315 PF00583 Acetyltransferase (GNAT) family KI609_13325 PF03466 LysR substrate binding domain KI609_13325 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KI609_13330 PF01966 HD domain KI609_13335 PF00581 Rhodanese-like domain KI609_13335 PF17773 UPF0176 acylphosphatase like domain KI609_13350 PF02600 Disulfide bond formation protein DsbB KI609_13355 PF00005 ABC transporter KI609_13355 PF17850 CysA C-terminal regulatory domain KI609_13355 PF12857 TOBE-like domain KI609_13360 PF00528 Binding-protein-dependent transport system inner membrane component KI609_13365 PF00528 Binding-protein-dependent transport system inner membrane component KI609_13380 PF00578 AhpC/TSA family KI609_13380 PF10417 C-terminal domain of 1-Cys peroxiredoxin KI609_13385 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KI609_13385 PF03466 LysR substrate binding domain KI609_13390 PF02525 Flavodoxin-like fold KI609_13395 PF03358 NADPH-dependent FMN reductase KI609_13400 PF03180 NLPA lipoprotein KI609_13425 PF02627 Carboxymuconolactone decarboxylase family KI609_13435 PF00583 Acetyltransferase (GNAT) family KI609_13440 PF00528 Binding-protein-dependent transport system inner membrane component KI609_13445 PF00005 ABC transporter KI609_13445 PF09383 NIL domain KI609_13450 PF00072 Response regulator receiver domain KI609_13450 PF08448 PAS fold KI609_13450 PF00512 His Kinase A (phospho-acceptor) domain KI609_13450 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KI609_13450 PF13188 PAS domain KI609_13455 PF07690 Major Facilitator Superfamily KI609_13460 PF07690 Major Facilitator Superfamily KI609_13465 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KI609_13465 PF03466 LysR substrate binding domain KI609_13475 PF01609 Transposase DDE domain KI609_13475 PF05598 Transposase domain (DUF772) KI609_13480 PF01609 Transposase DDE domain KI609_13480 PF05598 Transposase domain (DUF772) KI609_13485 PF01609 Transposase DDE domain KI609_13485 PF05598 Transposase domain (DUF772) KI609_13490 PF05598 Transposase domain (DUF772) KI609_13490 PF01609 Transposase DDE domain KI609_13500 PF07804 HipA-like C-terminal domain KI609_13505 PF01261 Xylose isomerase-like TIM barrel KI609_13510 PF02782 FGGY family of carbohydrate kinases, C-terminal domain KI609_13510 PF00370 FGGY family of carbohydrate kinases, N-terminal domain KI609_13515 PF01325 Iron dependent repressor, N-terminal DNA binding domain KI609_13515 PF00480 ROK family KI609_13520 PF00005 ABC transporter KI609_13525 PF02653 Branched-chain amino acid transport system / permease component KI609_13530 PF13407 Periplasmic binding protein domain KI609_13540 PF08450 SMP-30/Gluconolactonase/LRE-like region KI609_13550 PF03466 LysR substrate binding domain KI609_13550 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KI609_13555 PF00171 Aldehyde dehydrogenase family KI609_13560 PF13407 Periplasmic binding protein domain KI609_13565 PF13407 Periplasmic binding protein domain KI609_13570 PF00005 ABC transporter KI609_13575 PF02653 Branched-chain amino acid transport system / permease component KI609_13580 PF00005 ABC transporter KI609_13585 PF02653 Branched-chain amino acid transport system / permease component KI609_13590 PF02653 Branched-chain amino acid transport system / permease component KI609_13595 PF00920 Dehydratase family KI609_13600 PF00701 Dihydrodipicolinate synthetase family KI609_13605 PF05035 2-keto-3-deoxy-galactonokinase KI609_13610 PF01081 KDPG and KHG aldolase KI609_13615 PF13378 Enolase C-terminal domain-like KI609_13615 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain KI609_13635 PF01970 Tripartite tricarboxylate transporter TctA family KI609_13645 PF00486 Transcriptional regulatory protein, C terminal KI609_13645 PF00072 Response regulator receiver domain KI609_13650 PF00512 His Kinase A (phospho-acceptor) domain KI609_13650 PF00672 HAMP domain KI609_13650 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KI609_13660 PF03459 TOBE domain KI609_13665 PF00005 ABC transporter KI609_13670 PF00528 Binding-protein-dependent transport system inner membrane component KI609_13675 PF00141 Peroxidase KI609_13680 PF00296 Luciferase-like monooxygenase KI609_13690 PF09084 NMT1/THI5 like KI609_13695 PF03358 NADPH-dependent FMN reductase KI609_13705 PF04362 Bacterial Fe(2+) trafficking KI609_13715 PF01266 FAD dependent oxidoreductase KI609_13715 PF05430 S-adenosyl-L-methionine-dependent methyltransferase KI609_13720 PF01925 Sulfite exporter TauE/SafE KI609_13735 PF01507 Phosphoadenosine phosphosulfate reductase family KI609_13740 PF01507 Phosphoadenosine phosphosulfate reductase family KI609_13745 PF00009 Elongation factor Tu GTP binding domain KI609_13750 PF11953 Domain of unknown function (DUF3470) KI609_13750 PF00037 4Fe-4S binding domain KI609_13755 PF07992 Pyridine nucleotide-disulphide oxidoreductase KI609_13770 PF08543 Phosphomethylpyrimidine kinase KI609_13775 PF01266 FAD dependent oxidoreductase KI609_13785 PF05690 Thiazole biosynthesis protein ThiG KI609_13790 PF02581 Thiamine monophosphate synthase KI609_13800 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain KI609_13800 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain KI609_13800 PF18321 3-hydroxybutyryl-CoA dehydrogenase reduced Rossmann-fold domain KI609_13805 PF00378 Enoyl-CoA hydratase/isomerase KI609_13810 PF13545 Crp-like helix-turn-helix domain KI609_13810 PF00027 Cyclic nucleotide-binding domain KI609_13820 PF00441 Acyl-CoA dehydrogenase, C-terminal domain KI609_13820 PF02770 Acyl-CoA dehydrogenase, middle domain KI609_13820 PF02771 Acyl-CoA dehydrogenase, N-terminal domain KI609_13840 PF02016 LD-carboxypeptidase N-terminal domain KI609_13840 PF17676 LD-carboxypeptidase C-terminal domain KI609_13845 PF00561 alpha/beta hydrolase fold KI609_13855 PF13458 Periplasmic binding protein KI609_13860 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases KI609_13860 PF14824 Sirohaem biosynthesis protein central KI609_13860 PF10414 Sirohaem synthase dimerisation region KI609_13865 PF13442 Cytochrome C oxidase, cbb3-type, subunit III KI609_13870 PF00034 Cytochrome c KI609_13875 PF13442 Cytochrome C oxidase, cbb3-type, subunit III KI609_13885 PF17805 AsnC-like ligand binding domain KI609_13890 PF17805 AsnC-like ligand binding domain KI609_13890 PF13404 AsnC-type helix-turn-helix domain KI609_13895 PF17805 AsnC-like ligand binding domain KI609_13895 PF13404 AsnC-type helix-turn-helix domain KI609_13900 PF04055 Radical SAM superfamily KI609_13900 PF13186 Iron-sulfur cluster-binding domain KI609_13910 PF00510 Cytochrome c oxidase subunit III KI609_13915 PF03626 Prokaryotic Cytochrome C oxidase subunit IV KI609_13920 PF00034 Cytochrome c KI609_13925 PF00115 Cytochrome C and Quinol oxidase polypeptide I KI609_13930 PF07728 AAA domain (dynein-related subfamily) KI609_13930 PF08406 CbbQ/NirQ/NorQ C-terminal KI609_13950 PF01053 Cys/Met metabolism PLP-dependent enzyme KI609_13955 PF12867 DinB superfamily KI609_13955 PF03781 Sulfatase-modifying factor enzyme 1 KI609_13960 PF10017 Histidine-specific methyltransferase, SAM-dependent KI609_13965 PF03793 PASTA domain KI609_13965 PF00069 Protein kinase domain KI609_13970 PF01226 Formate/nitrite transporter KI609_13975 PF08376 Nitrate and nitrite sensing KI609_13975 PF03861 ANTAR domain KI609_13980 PF13806 Rieske-like [2Fe-2S] domain KI609_13985 PF01077 Nitrite and sulphite reductase 4Fe-4S domain KI609_13985 PF04324 BFD-like [2Fe-2S] binding domain KI609_13985 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain KI609_13985 PF07992 Pyridine nucleotide-disulphide oxidoreductase KI609_13985 PF18267 Rubredoxin NAD+ reductase C-terminal domain KI609_13995 PF03922 OmpW family KI609_14000 PF05661 Protein of unknown function (DUF808) KI609_14005 PF01938 TRAM domain KI609_14005 PF05958 tRNA (Uracil-5-)-methyltransferase KI609_14010 PF02769 AIR synthase related protein, C-terminal domain KI609_14010 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain KI609_14010 PF18076 Formylglycinamide ribonucleotide amidotransferase N-terminal KI609_14015 PF00557 Metallopeptidase family M24 KI609_14020 PF08335 GlnD PII-uridylyltransferase KI609_14020 PF01966 HD domain KI609_14020 PF01909 Nucleotidyltransferase domain KI609_14025 PF01327 Polypeptide deformylase KI609_14030 PF04304 Protein of unknown function (DUF454) KI609_14060 PF03588 Leucyl/phenylalanyl-tRNA protein transferase KI609_14065 PF04376 Arginine-tRNA-protein transferase, N terminus KI609_14065 PF04377 Arginine-tRNA-protein transferase, C terminus KI609_14070 PF09339 IclR helix-turn-helix domain KI609_14070 PF01614 Bacterial transcriptional regulator KI609_14075 PF00768 D-alanyl-D-alanine carboxypeptidase KI609_14080 PF00682 HMGL-like KI609_14080 PF08502 LeuA allosteric (dimerisation) domain KI609_14085 PF01066 CDP-alcohol phosphatidyltransferase KI609_14090 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain KI609_14090 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain KI609_14095 PF10369 Small subunit of acetolactate synthase KI609_14100 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain KI609_14100 PF00205 Thiamine pyrophosphate enzyme, central domain KI609_14100 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain KI609_14125 PF01219 Prokaryotic diacylglycerol kinase KI609_14130 PF03641 Possible lysine decarboxylase KI609_14135 PF00543 Nitrogen regulatory protein P-II KI609_14140 PF00795 Carbon-nitrogen hydrolase KI609_14140 PF02540 NAD synthase KI609_14145 PF07685 CobB/CobQ-like glutamine amidotransferase domain KI609_14150 PF01458 Uncharacterized protein family (UPF0051) KI609_14155 PF00005 ABC transporter KI609_14165 PF00266 Aminotransferase class-V KI609_14170 PF01592 NifU-like N terminal domain KI609_14175 PF01883 Iron-sulfur cluster assembly protein KI609_14190 PF00672 HAMP domain KI609_14190 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain KI609_14190 PF02203 Tar ligand binding domain homologue KI609_14195 PF01584 CheW-like domain KI609_14205 PF00672 HAMP domain KI609_14205 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain KI609_14205 PF02203 Tar ligand binding domain homologue KI609_14210 PF00719 Inorganic pyrophosphatase KI609_14215 PF03030 Inorganic H+ pyrophosphatase KI609_14225 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KI609_14230 PF00072 Response regulator receiver domain KI609_14230 PF00486 Transcriptional regulatory protein, C terminal KI609_14255 PF00301 Rubredoxin KI609_14260 PF00689 Cation transporting ATPase, C-terminus KI609_14260 PF00690 Cation transporter/ATPase, N-terminus KI609_14265 PF00171 Aldehyde dehydrogenase family KI609_14285 PF03773 Predicted permease KI609_14290 PF04542 Sigma-70 region 2 KI609_14290 PF08281 Sigma-70, region 4 KI609_14300 PF06463 Molybdenum Cofactor Synthesis C KI609_14300 PF04055 Radical SAM superfamily KI609_14305 PF12804 MobA-like NTP transferase domain KI609_14315 PF03453 MoeA N-terminal region (domain I and II) KI609_14315 PF00994 Probable molybdopterin binding domain KI609_14315 PF03454 MoeA C-terminal region (domain IV) KI609_14325 PF00075 RNase H KI609_14330 PF08241 Methyltransferase domain KI609_14335 PF16123 Hydroxyacylglutathione hydrolase C-terminus KI609_14335 PF00753 Metallo-beta-lactamase superfamily KI609_14340 PF01476 LysM domain KI609_14340 PF01464 Transglycosylase SLT domain KI609_14360 PF02132 RecR protein KI609_14360 PF13662 Toprim domain KI609_14365 PF02575 YbaB/EbfC DNA-binding family KI609_14370 PF12170 DNA polymerase III tau subunit V interacting with alpha KI609_14370 PF12168 DNA polymerase III subunits tau domain IV DnaB-binding KI609_14370 PF12169 DNA polymerase III subunits gamma and tau domain III KI609_14375 PF01292 Prokaryotic cytochrome b561 KI609_14390 PF00665 Integrase core domain KI609_14390 PF13936 Helix-turn-helix domain KI609_14400 PF00563 EAL domain KI609_14400 PF00990 Diguanylate cyclase, GGDEF domain KI609_14400 PF03707 Bacterial signalling protein N terminal repeat KI609_14405 PF00990 Diguanylate cyclase, GGDEF domain KI609_14450 PF09278 MerR, DNA binding KI609_14450 PF00376 MerR family regulatory protein KI609_14455 PF00403 Heavy-metal-associated domain KI609_14480 PF00394 Multicopper oxidase KI609_14480 PF07731 Multicopper oxidase KI609_14480 PF07732 Multicopper oxidase KI609_14485 PF00127 Copper binding proteins, plastocyanin/azurin family KI609_14500 PF03576 Peptidase family S58 KI609_14515 PF00005 ABC transporter KI609_14515 PF12848 ABC transporter KI609_14520 PF00270 DEAD/DEAH box helicase KI609_14520 PF00271 Helicase conserved C-terminal domain KI609_14525 PF13460 NAD(P)H-binding KI609_14555 PF05698 Bacterial trigger factor protein (TF) C-terminus KI609_14565 PF00216 Bacterial DNA-binding protein KI609_14570 PF00180 Isocitrate/isopropylmalate dehydrogenase KI609_14575 PF01066 CDP-alcohol phosphatidyltransferase KI609_14580 PF01541 GIY-YIG catalytic domain KI609_14580 PF08459 UvrC Helix-hairpin-helix N-terminal KI609_14585 PF03401 Tripartite tricarboxylate transporter family receptor KI609_14590 PF03401 Tripartite tricarboxylate transporter family receptor KI609_14595 PF00682 HMGL-like KI609_14600 PF02515 CoA-transferase family III KI609_14605 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KI609_14615 PF01132 Elongation factor P (EF-P) OB domain KI609_14615 PF08207 Elongation factor P (EF-P) KOW-like domain KI609_14615 PF09285 Elongation factor P, C-terminal KI609_14620 PF00919 Uncharacterized protein family UPF0004 KI609_14620 PF18693 TRAM domain KI609_14620 PF04055 Radical SAM superfamily KI609_14625 PF07879 PHB/PHA accumulation regulator DNA-binding domain KI609_14625 PF05233 PHB accumulation regulatory domain KI609_14645 PF13291 ACT domain KI609_14645 PF04607 Region found in RelA / SpoT proteins KI609_14645 PF02824 TGS domain KI609_14655 PF00106 short chain dehydrogenase KI609_14665 PF00072 Response regulator receiver domain KI609_14665 PF00486 Transcriptional regulatory protein, C terminal KI609_14670 PF00672 HAMP domain KI609_14670 PF00512 His Kinase A (phospho-acceptor) domain KI609_14670 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KI609_14675 PF02542 YgbB family KI609_14680 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase KI609_14680 PF02542 YgbB family KI609_14685 PF17757 UvrB interaction domain KI609_14685 PF03461 TRCF domain KI609_14685 PF00271 Helicase conserved C-terminal domain KI609_14685 PF00270 DEAD/DEAH box helicase KI609_14685 PF02559 CarD-like/TRCF domain KI609_14705 PF02082 Transcriptional regulator KI609_14710 PF01814 Hemerythrin HHE cation binding domain KI609_14710 PF04405 Domain of Unknown function (DUF542) KI609_14720 PF12843 Putative quorum-sensing-regulated virulence factor KI609_14725 PF01253 Translation initiation factor SUI1 KI609_14735 PF00270 DEAD/DEAH box helicase KI609_14735 PF00271 Helicase conserved C-terminal domain KI609_14745 PF00990 Diguanylate cyclase, GGDEF domain KI609_14750 PF00672 HAMP domain KI609_14750 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain KI609_14750 PF02203 Tar ligand binding domain homologue KI609_14755 PF12849 PBP superfamily domain KI609_14770 PF00724 NADH:flavin oxidoreductase / NADH oxidase family KI609_14770 PF07992 Pyridine nucleotide-disulphide oxidoreductase KI609_14780 PF04102 SlyX KI609_14785 PF00155 Aminotransferase class I and II KI609_14795 PF10576 Iron-sulfur binding domain of endonuclease III KI609_14795 PF00633 Helix-hairpin-helix motif KI609_14795 PF00730 HhH-GPD superfamily base excision DNA repair protein KI609_14800 PF03466 LysR substrate binding domain KI609_14800 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KI609_14805 PF13378 Enolase C-terminal domain-like KI609_14805 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain KI609_14810 PF02426 Muconolactone delta-isomerase KI609_14815 PF03401 Tripartite tricarboxylate transporter family receptor KI609_14820 PF04444 Catechol dioxygenase N terminus KI609_14820 PF00775 Dioxygenase KI609_14825 PF00939 Sodium:sulfate symporter transmembrane region KI609_14830 PF02277 Phosphoribosyltransferase KI609_14835 PF00881 Nitroreductase family KI609_14840 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain KI609_14840 PF07685 CobB/CobQ-like glutamine amidotransferase domain KI609_14855 PF00155 Aminotransferase class I and II KI609_14860 PF03186 CobD/Cbib protein KI609_14870 PF02572 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP KI609_14870 PF12557 Cob(I)alamin adenosyltransferase N terminal KI609_14875 PF11965 Domain of unknown function (DUF3479) KI609_14875 PF02514 CobN/Magnesium Chelatase KI609_14890 PF00005 ABC transporter KI609_14895 PF01032 FecCD transport family KI609_14905 PF02283 Cobinamide kinase / cobinamide phosphate guanyltransferase KI609_14910 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain KI609_14910 PF07685 CobB/CobQ-like glutamine amidotransferase domain KI609_14915 PF07715 TonB-dependent Receptor Plug Domain KI609_14915 PF00593 TonB dependent receptor KI609_14930 PF01925 Sulfite exporter TauE/SafE KI609_14935 PF00990 Diguanylate cyclase, GGDEF domain KI609_14935 PF00563 EAL domain KI609_14935 PF03707 Bacterial signalling protein N terminal repeat KI609_14940 PF01966 HD domain KI609_14950 PF06969 HemN C-terminal domain KI609_14950 PF04055 Radical SAM superfamily KI609_14955 PF13545 Crp-like helix-turn-helix domain KI609_14955 PF00027 Cyclic nucleotide-binding domain KI609_14970 PF12801 4Fe-4S binding domain KI609_14970 PF13746 4Fe-4S dicluster domain KI609_14970 PF11614 IG-like fold at C-terminal of FixG, putative oxidoreductase KI609_14975 PF14715 N-terminal domain of cytochrome oxidase-cbb3, FixP KI609_14975 PF13442 Cytochrome C oxidase, cbb3-type, subunit III KI609_14990 PF00115 Cytochrome C and Quinol oxidase polypeptide I KI609_15000 PF00403 Heavy-metal-associated domain KI609_15010 PF00005 ABC transporter KI609_15015 PF00005 ABC transporter KI609_15020 PF02653 Branched-chain amino acid transport system / permease component KI609_15020 PF11862 Domain of unknown function (DUF3382) KI609_15030 PF13458 Periplasmic binding protein KI609_15035 PF01979 Amidohydrolase family KI609_15045 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KI609_15045 PF03466 LysR substrate binding domain KI609_15055 PF13193 AMP-binding enzyme C-terminal domain KI609_15055 PF00501 AMP-binding enzyme KI609_15060 PF00378 Enoyl-CoA hydratase/isomerase KI609_15065 PF03401 Tripartite tricarboxylate transporter family receptor KI609_15075 PF00392 Bacterial regulatory proteins, gntR family KI609_15075 PF07729 FCD domain KI609_15080 PF03466 LysR substrate binding domain KI609_15080 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KI609_15090 PF01790 Prolipoprotein diacylglyceryl transferase KI609_15095 PF00920 Dehydratase family KI609_15100 PF00920 Dehydratase family KI609_15110 PF00034 Cytochrome c KI609_15120 PF13193 AMP-binding enzyme C-terminal domain KI609_15120 PF00501 AMP-binding enzyme KI609_15120 PF16177 Acetyl-coenzyme A synthetase N-terminus KI609_15125 PF03350 Uncharacterized protein family, UPF0114 KI609_15130 PF00571 CBS domain KI609_15130 PF00005 ABC transporter KI609_15135 PF00528 Binding-protein-dependent transport system inner membrane component KI609_15140 PF04069 Substrate binding domain of ABC-type glycine betaine transport system KI609_15155 PF00672 HAMP domain KI609_15155 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KI609_15155 PF00512 His Kinase A (phospho-acceptor) domain KI609_15160 PF00486 Transcriptional regulatory protein, C terminal KI609_15160 PF00072 Response regulator receiver domain KI609_15165 PF00206 Lyase KI609_15165 PF10415 Fumarase C C-terminus KI609_15180 PF00216 Bacterial DNA-binding protein KI609_15195 PF00990 Diguanylate cyclase, GGDEF domain KI609_15195 PF03707 Bacterial signalling protein N terminal repeat KI609_15195 PF00563 EAL domain KI609_15205 PF01177 Asp/Glu/Hydantoin racemase KI609_15210 PF01863 Protein of unknown function DUF45 KI609_15240 PF00004 ATPase family associated with various cellular activities (AAA) KI609_15240 PF05362 Lon protease (S16) C-terminal proteolytic domain KI609_15240 PF02190 ATP-dependent protease La (LON) substrate-binding domain KI609_15245 PF10431 C-terminal, D2-small domain, of ClpB protein KI609_15245 PF07724 AAA domain (Cdc48 subfamily) KI609_15245 PF06689 ClpX C4-type zinc finger KI609_15250 PF00574 Clp protease KI609_15255 PF05697 Bacterial trigger factor protein (TF) KI609_15255 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase KI609_15255 PF05698 Bacterial trigger factor protein (TF) C-terminus KI609_15265 PF00873 AcrB/AcrD/AcrF family KI609_15270 PF13533 Biotin-lipoyl like KI609_15285 PF03313 Serine dehydratase alpha chain KI609_15285 PF03315 Serine dehydratase beta chain KI609_15300 PF01593 Flavin containing amine oxidoreductase KI609_15305 PF03401 Tripartite tricarboxylate transporter family receptor KI609_15320 PF13419 Haloacid dehalogenase-like hydrolase KI609_15325 PF00356 Bacterial regulatory proteins, lacI family KI609_15330 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain KI609_15330 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain KI609_15335 PF00294 pfkB family carbohydrate kinase KI609_15345 PF00005 ABC transporter KI609_15350 PF00497 Bacterial extracellular solute-binding proteins, family 3 KI609_15355 PF00528 Binding-protein-dependent transport system inner membrane component KI609_15360 PF00528 Binding-protein-dependent transport system inner membrane component KI609_15365 PF00762 Ferrochelatase KI609_15370 PF13654 AAA domain KI609_15370 PF05362 Lon protease (S16) C-terminal proteolytic domain KI609_15380 PF00665 Integrase core domain KI609_15380 PF13936 Helix-turn-helix domain KI609_15385 PF00528 Binding-protein-dependent transport system inner membrane component KI609_15390 PF00528 Binding-protein-dependent transport system inner membrane component KI609_15395 PF00497 Bacterial extracellular solute-binding proteins, family 3 KI609_15405 PF00557 Metallopeptidase family M24 KI609_15410 PF00462 Glutaredoxin KI609_15415 PF00561 alpha/beta hydrolase fold KI609_15420 PF11862 Domain of unknown function (DUF3382) KI609_15420 PF02653 Branched-chain amino acid transport system / permease component KI609_15430 PF00005 ABC transporter KI609_15435 PF00005 ABC transporter KI609_15435 PF12399 Branched-chain amino acid ATP-binding cassette transporter KI609_15445 PF02954 Bacterial regulatory protein, Fis family KI609_15445 PF00072 Response regulator receiver domain KI609_15445 PF00158 Sigma-54 interaction domain KI609_15450 PF01970 Tripartite tricarboxylate transporter TctA family KI609_15460 PF03401 Tripartite tricarboxylate transporter family receptor KI609_15465 PF00072 Response regulator receiver domain KI609_15465 PF00486 Transcriptional regulatory protein, C terminal KI609_15470 PF08521 Two-component sensor kinase N-terminal KI609_15470 PF00512 His Kinase A (phospho-acceptor) domain KI609_15470 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KI609_15475 PF01479 S4 domain KI609_15485 PF01842 ACT domain KI609_15485 PF13840 ACT domain KI609_15485 PF00696 Amino acid kinase family KI609_15490 PF01171 PP-loop family KI609_15490 PF09179 TilS substrate binding domain KI609_15495 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit KI609_15500 PF12833 Helix-turn-helix domain KI609_15500 PF02805 Metal binding domain of Ada KI609_15500 PF06029 AlkA N-terminal domain KI609_15500 PF00730 HhH-GPD superfamily base excision DNA repair protein KI609_15505 PF09190 DALR domain KI609_15505 PF01406 tRNA synthetases class I (C) catalytic domain KI609_15520 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD KI609_15525 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD KI609_15530 PF00149 Calcineurin-like phosphoesterase KI609_15535 PF06167 Glucose-regulated metallo-peptidase M90 KI609_15540 PF13309 HTH domain KI609_15540 PF08348 YheO-like PAS domain KI609_15545 PF00291 Pyridoxal-phosphate dependent enzyme KI609_15555 PF00456 Transketolase, thiamine diphosphate binding domain KI609_15555 PF17831 Pyruvate dehydrogenase E1 component middle domain KI609_15560 PF01037 Lrp/AsnC ligand binding domain KI609_15575 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase KI609_15580 PF00472 RF-1 domain KI609_15585 PF01220 Dehydroquinase class II KI609_15595 PF00749 tRNA synthetases class I (E and Q), catalytic domain KI609_15595 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain KI609_15645 PF03449 Transcription elongation factor, N-terminal KI609_15645 PF01272 Transcription elongation factor, GreA/GreB, C-term KI609_15695 PF10137 Predicted nucleotide-binding protein containing TIR-like domain KI609_15705 PF00501 AMP-binding enzyme KI609_15705 PF13193 AMP-binding enzyme C-terminal domain KI609_15715 PF02515 CoA-transferase family III KI609_15720 PF03401 Tripartite tricarboxylate transporter family receptor KI609_15725 PF03061 Thioesterase superfamily KI609_15755 PF13195 Protein of unknown function (DUF4011) KI609_15755 PF13195 Protein of unknown function (DUF4011) KI609_15755 PF13087 AAA domain KI609_15755 PF13086 AAA domain KI609_15755 PF13087 AAA domain KI609_15755 PF13086 AAA domain KI609_15775 PF00497 Bacterial extracellular solute-binding proteins, family 3 KI609_15785 PF13091 PLD-like domain KI609_15785 PF13396 Phospholipase_D-nuclease N-terminal KI609_15800 PF00849 RNA pseudouridylate synthase KI609_15805 PF00440 Bacterial regulatory proteins, tetR family KI609_15810 PF00107 Zinc-binding dehydrogenase KI609_15810 PF08240 Alcohol dehydrogenase GroES-like domain KI609_15815 PF00106 short chain dehydrogenase KI609_15825 PF00565 Staphylococcal nuclease homologue KI609_15840 PF00849 RNA pseudouridylate synthase KI609_15845 PF03060 Nitronate monooxygenase KI609_15850 PF02308 MgtC family KI609_15885 PF01926 50S ribosome-binding GTPase KI609_15900 PF12805 FUSC-like inner membrane protein yccS KI609_15905 PF04262 Glutamate-cysteine ligase KI609_15910 PF00106 short chain dehydrogenase KI609_15930 PF00925 GTP cyclohydrolase II KI609_15930 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase KI609_15935 PF00885 6,7-dimethyl-8-ribityllumazine synthase KI609_15940 PF01029 NusB family KI609_15945 PF00155 Aminotransferase class I and II KI609_15950 PF03061 Thioesterase superfamily KI609_15955 PF01618 MotA/TolQ/ExbB proton channel family KI609_15960 PF02472 Biopolymer transport protein ExbD/TolR KI609_15975 PF11791 Aconitate B N-terminal domain KI609_15975 PF06434 Aconitate hydratase 2 N-terminus KI609_15975 PF00330 Aconitase family (aconitate hydratase) KI609_15990 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain KI609_15990 PF00056 lactate/malate dehydrogenase, NAD binding domain KI609_15995 PF07702 UTRA domain KI609_15995 PF00392 Bacterial regulatory proteins, gntR family KI609_16005 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit KI609_16010 PF00890 FAD binding domain KI609_16010 PF02910 Fumarate reductase flavoprotein C-term KI609_16015 PF13085 2Fe-2S iron-sulfur cluster binding domain KI609_16020 PF03937 Flavinator of succinate dehydrogenase KI609_16025 PF00285 Citrate synthase, C-terminal domain KI609_16030 PF01965 DJ-1/PfpI family KI609_16030 PF12833 Helix-turn-helix domain KI609_16035 PF08240 Alcohol dehydrogenase GroES-like domain KI609_16035 PF00107 Zinc-binding dehydrogenase KI609_16040 PF00756 Putative esterase KI609_16045 PF00884 Sulfatase KI609_16045 PF08019 Phosphoethanolamine transferase EptA/EptB KI609_16050 PF00109 Beta-ketoacyl synthase, N-terminal domain KI609_16050 PF08990 Erythronolide synthase docking KI609_16050 PF08240 Alcohol dehydrogenase GroES-like domain KI609_16050 PF00698 Acyl transferase domain KI609_16050 PF09277 Erythronolide synthase, docking KI609_16050 PF02801 Beta-ketoacyl synthase, C-terminal domain KI609_16050 PF08659 KR domain KI609_16050 PF00550 Phosphopantetheine attachment site KI609_16050 PF14765 Polyketide synthase dehydratase KI609_16050 PF16197 Ketoacyl-synthetase C-terminal extension KI609_16055 PF03466 LysR substrate binding domain KI609_16055 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KI609_16060 PF14542 GCN5-related N-acetyl-transferase KI609_16065 PF13936 Helix-turn-helix domain KI609_16065 PF00665 Integrase core domain KI609_16070 PF00589 Phage integrase family KI609_16070 PF13495 Phage integrase, N-terminal SAM-like domain KI609_16100 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KI609_16100 PF03466 LysR substrate binding domain KI609_16105 PF04055 Radical SAM superfamily KI609_16110 PF14760 Rnk N-terminus KI609_16110 PF01272 Transcription elongation factor, GreA/GreB, C-term KI609_16125 PF01654 Cytochrome bd terminal oxidase subunit I KI609_16130 PF02322 Cytochrome bd terminal oxidase subunit II KI609_16140 PF00441 Acyl-CoA dehydrogenase, C-terminal domain KI609_16140 PF12806 Acetyl-CoA dehydrogenase C-terminal like KI609_16140 PF02770 Acyl-CoA dehydrogenase, middle domain KI609_16140 PF02771 Acyl-CoA dehydrogenase, N-terminal domain KI609_16145 PF01012 Electron transfer flavoprotein domain KI609_16145 PF00766 Electron transfer flavoprotein FAD-binding domain KI609_16150 PF01012 Electron transfer flavoprotein domain KI609_16155 PF00924 Mechanosensitive ion channel KI609_16155 PF12795 Mechanosensitive ion channel porin domain KI609_16155 PF12794 Mechanosensitive ion channel inner membrane domain 1 KI609_16160 PF00378 Enoyl-CoA hydratase/isomerase KI609_16165 PF00850 Histone deacetylase domain KI609_16170 PF17863 AAA lid domain KI609_16170 PF07726 ATPase family associated with various cellular activities (AAA) KI609_16180 PF11992 Domain of unknown function (DUF3488) KI609_16180 PF13559 Domain of unknown function (DUF4129) KI609_16180 PF01841 Transglutaminase-like superfamily KI609_16185 PF13406 Transglycosylase SLT domain KI609_16190 PF00005 ABC transporter KI609_16195 PF01061 ABC-2 type transporter KI609_16200 PF01554 MatE KI609_16215 PF13458 Periplasmic binding protein KI609_16220 PF00011 Hsp20/alpha crystallin family KI609_16225 PF12704 MacB-like periplasmic core domain KI609_16225 PF00005 ABC transporter KI609_16225 PF02687 FtsX-like permease family KI609_16235 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion KI609_16240 PF02321 Outer membrane efflux protein KI609_16245 PF00814 Glycoprotease family KI609_16255 PF03861 ANTAR domain KI609_16255 PF00072 Response regulator receiver domain KI609_16260 PF03180 NLPA lipoprotein KI609_16270 PF00528 Binding-protein-dependent transport system inner membrane component KI609_16275 PF00005 ABC transporter KI609_16280 PF00571 CBS domain KI609_16285 PF03480 Bacterial extracellular solute-binding protein, family 7 KI609_16290 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component KI609_16295 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component KI609_16305 PF00356 Bacterial regulatory proteins, lacI family KI609_16320 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain KI609_16320 PF04324 BFD-like [2Fe-2S] binding domain KI609_16320 PF01077 Nitrite and sulphite reductase 4Fe-4S domain KI609_16320 PF07992 Pyridine nucleotide-disulphide oxidoreductase KI609_16320 PF18267 Rubredoxin NAD+ reductase C-terminal domain KI609_16330 PF00355 Rieske [2Fe-2S] domain KI609_16335 PF04879 Molybdopterin oxidoreductase Fe4S4 domain KI609_16335 PF00384 Molybdopterin oxidoreductase KI609_16335 PF01568 Molydopterin dinucleotide binding domain KI609_16340 PF00591 Glycosyl transferase family, a/b domain KI609_16340 PF02885 Glycosyl transferase family, helical bundle domain KI609_16345 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases KI609_16355 PF03061 Thioesterase superfamily KI609_16395 PF13188 PAS domain KI609_16395 PF00990 Diguanylate cyclase, GGDEF domain KI609_16395 PF00563 EAL domain KI609_16395 PF03707 Bacterial signalling protein N terminal repeat KI609_16400 PF01165 Ribosomal protein S21 KI609_16410 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KI609_16410 PF03466 LysR substrate binding domain KI609_16415 PF00180 Isocitrate/isopropylmalate dehydrogenase KI609_16425 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KI609_16425 PF03466 LysR substrate binding domain KI609_16445 PF01523 Putative modulator of DNA gyrase KI609_16450 PF04751 Protein of unknown function (DUF615) KI609_16455 PF00994 Probable molybdopterin binding domain KI609_16465 PF00132 Bacterial transferase hexapeptide (six repeats) KI609_16470 PF00588 SpoU rRNA Methylase family KI609_16475 PF00459 Inositol monophosphatase family KI609_16480 PF00072 Response regulator receiver domain KI609_16485 PF00512 His Kinase A (phospho-acceptor) domain KI609_16485 PF00672 HAMP domain KI609_16485 PF00072 Response regulator receiver domain KI609_16485 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KI609_16485 PF01627 Hpt domain KI609_16485 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) KI609_16490 PF00563 EAL domain KI609_16490 PF00990 Diguanylate cyclase, GGDEF domain KI609_16490 PF03707 Bacterial signalling protein N terminal repeat KI609_16505 PF00672 HAMP domain KI609_16505 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain KI609_16505 PF02203 Tar ligand binding domain homologue KI609_16510 PF01584 CheW-like domain KI609_16515 PF03707 Bacterial signalling protein N terminal repeat KI609_16515 PF00990 Diguanylate cyclase, GGDEF domain KI609_16515 PF00563 EAL domain KI609_16530 PF00512 His Kinase A (phospho-acceptor) domain KI609_16530 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KI609_16530 PF08448 PAS fold KI609_16530 PF13188 PAS domain KI609_16530 PF00072 Response regulator receiver domain KI609_16535 PF00158 Sigma-54 interaction domain KI609_16535 PF00072 Response regulator receiver domain KI609_16535 PF02954 Bacterial regulatory protein, Fis family KI609_16540 PF00158 Sigma-54 interaction domain KI609_16540 PF00072 Response regulator receiver domain KI609_16540 PF02954 Bacterial regulatory protein, Fis family KI609_16560 PF06983 3-demethylubiquinone-9 3-methyltransferase KI609_16565 PF13936 Helix-turn-helix domain KI609_16565 PF00665 Integrase core domain KI609_16580 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KI609_16580 PF03466 LysR substrate binding domain KI609_16585 PF03401 Tripartite tricarboxylate transporter family receptor KI609_16595 PF01381 Helix-turn-helix KI609_16615 PF05190 MutS family domain IV KI609_16615 PF01624 MutS domain I KI609_16615 PF05188 MutS domain II KI609_16615 PF05192 MutS domain III KI609_16615 PF00488 MutS domain V KI609_16645 PF03707 Bacterial signalling protein N terminal repeat KI609_16645 PF00990 Diguanylate cyclase, GGDEF domain KI609_16645 PF00563 EAL domain KI609_16655 PF02673 Bacitracin resistance protein BacA KI609_16660 PF02321 Outer membrane efflux protein KI609_16665 PF00873 AcrB/AcrD/AcrF family KI609_16670 PF00873 AcrB/AcrD/AcrF family KI609_16675 PF13533 Biotin-lipoyl like KI609_16700 PF07694 5TMR of 5TMR-LYT KI609_16700 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KI609_16700 PF06580 Histidine kinase KI609_16705 PF00072 Response regulator receiver domain KI609_16705 PF04397 LytTr DNA-binding domain KI609_16710 PF01810 LysE type translocator KI609_16715 PF00005 ABC transporter KI609_16720 PF00892 EamA-like transporter family KI609_16730 PF01758 Sodium Bile acid symporter family KI609_16740 PF09339 IclR helix-turn-helix domain KI609_16740 PF01614 Bacterial transcriptional regulator KI609_16760 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) KI609_16760 PF00072 Response regulator receiver domain KI609_16760 PF01627 Hpt domain KI609_16760 PF00512 His Kinase A (phospho-acceptor) domain KI609_16760 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KI609_16760 PF00672 HAMP domain KI609_16770 PF11849 Domain of unknown function (DUF3369) KI609_16775 PF00072 Response regulator receiver domain KI609_16775 PF00486 Transcriptional regulatory protein, C terminal KI609_16780 PF00486 Transcriptional regulatory protein, C terminal KI609_16780 PF00072 Response regulator receiver domain KI609_16785 PF00158 Sigma-54 interaction domain KI609_16785 PF02954 Bacterial regulatory protein, Fis family KI609_16785 PF00072 Response regulator receiver domain KI609_16795 PF13478 XdhC Rossmann domain KI609_16795 PF02625 XdhC and CoxI family KI609_16810 PF05362 Lon protease (S16) C-terminal proteolytic domain KI609_16810 PF00004 ATPase family associated with various cellular activities (AAA) KI609_16810 PF02190 ATP-dependent protease La (LON) substrate-binding domain KI609_16815 PF00941 FAD binding domain in molybdopterin dehydrogenase KI609_16815 PF03450 CO dehydrogenase flavoprotein C-terminal domain KI609_16820 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase KI609_16820 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain KI609_16825 PF01799 [2Fe-2S] binding domain KI609_16825 PF00111 2Fe-2S iron-sulfur cluster binding domain KI609_16835 PF03459 TOBE domain KI609_16835 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KI609_16840 PF09278 MerR, DNA binding KI609_16840 PF00376 MerR family regulatory protein KI609_16850 PF03358 NADPH-dependent FMN reductase KI609_16860 PF01758 Sodium Bile acid symporter family KI609_16875 PF01022 Bacterial regulatory protein, arsR family KI609_16885 PF00528 Binding-protein-dependent transport system inner membrane component KI609_16890 PF03459 TOBE domain KI609_16890 PF00005 ABC transporter KI609_16895 PF13426 PAS domain KI609_16895 PF00990 Diguanylate cyclase, GGDEF domain KI609_16895 PF00563 EAL domain KI609_16920 PF03109 ABC1 family KI609_16930 PF12849 PBP superfamily domain KI609_16935 PF00005 ABC transporter KI609_16940 PF00528 Binding-protein-dependent transport system inner membrane component KI609_16955 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component KI609_16960 PF03480 Bacterial extracellular solute-binding protein, family 7 KI609_16965 PF03480 Bacterial extracellular solute-binding protein, family 7 KI609_16970 PF13292 1-deoxy-D-xylulose-5-phosphate synthase KI609_16970 PF02779 Transketolase, pyrimidine binding domain KI609_16970 PF02780 Transketolase, C-terminal domain KI609_16975 PF00348 Polyprenyl synthetase KI609_16980 PF02609 Exonuclease VII small subunit KI609_16985 PF00355 Rieske [2Fe-2S] domain KI609_16985 PF00848 Ring hydroxylating alpha subunit (catalytic domain) KI609_16995 PF00581 Rhodanese-like domain KI609_17000 PF05247 Flagellar transcriptional activator (FlhD) KI609_17005 PF05280 Flagellar transcriptional activator (FlhC) KI609_17020 PF01594 AI-2E family transporter KI609_17025 PF00311 Phosphoenolpyruvate carboxylase KI609_17030 PF03900 Porphobilinogen deaminase, C-terminal domain KI609_17030 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain KI609_17050 PF01292 Prokaryotic cytochrome b561 KI609_17070 PF01435 Peptidase family M48 KI609_17075 PF10458 Valyl tRNA synthetase tRNA binding arm KI609_17075 PF00133 tRNA synthetases class I (I, L, M and V) KI609_17075 PF08264 Anticodon-binding domain of tRNA KI609_17080 PF00483 Nucleotidyl transferase KI609_17085 PF01206 Sulfurtransferase TusA KI609_17090 PF09296 NADH pyrophosphatase-like rudimentary NUDIX domain KI609_17090 PF09297 NADH pyrophosphatase zinc ribbon domain KI609_17090 PF00293 NUDIX domain KI609_17095 PF00291 Pyridoxal-phosphate dependent enzyme KI609_17105 PF13362 Toprim domain KI609_17105 PF08401 Domain of unknown function (DUF1738) KI609_17105 PF18818 Metallopeptidase superfamily domain KI609_17125 PF04002 RadC-like JAB domain KI609_17155 PF13356 Arm DNA-binding domain KI609_17155 PF00589 Phage integrase family KI609_17170 PF03466 LysR substrate binding domain KI609_17170 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KI609_17175 PF02771 Acyl-CoA dehydrogenase, N-terminal domain KI609_17175 PF02770 Acyl-CoA dehydrogenase, middle domain KI609_17175 PF00441 Acyl-CoA dehydrogenase, C-terminal domain KI609_17180 PF02515 CoA-transferase family III KI609_17190 PF00885 6,7-dimethyl-8-ribityllumazine synthase KI609_17205 PF03466 LysR substrate binding domain KI609_17205 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KI609_17210 PF03480 Bacterial extracellular solute-binding protein, family 7 KI609_17215 PF00920 Dehydratase family KI609_17225 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component KI609_17230 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component KI609_17240 PF01557 Fumarylacetoacetate (FAA) hydrolase family KI609_17245 PF08338 Domain of unknown function (DUF1731) KI609_17245 PF01370 NAD dependent epimerase/dehydratase family KI609_17250 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KI609_17250 PF03466 LysR substrate binding domain KI609_17255 PF00072 Response regulator receiver domain KI609_17255 PF01584 CheW-like domain KI609_17275 PF00175 Oxidoreductase NAD-binding domain KI609_17275 PF00111 2Fe-2S iron-sulfur cluster binding domain KI609_17275 PF00970 Oxidoreductase FAD-binding domain KI609_17280 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KI609_17280 PF00512 His Kinase A (phospho-acceptor) domain KI609_17280 PF00989 PAS fold KI609_17285 PF00196 Bacterial regulatory proteins, luxR family KI609_17285 PF00072 Response regulator receiver domain KI609_17290 PF03401 Tripartite tricarboxylate transporter family receptor KI609_17295 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) KI609_17300 PF01743 Poly A polymerase head domain KI609_17300 PF12627 Probable RNA and SrmB- binding site of polymerase A KI609_17300 PF12626 Polymerase A arginine-rich C-terminus KI609_17310 PF00308 Bacterial dnaA protein KI609_17320 PF00586 AIR synthase related protein, N-terminal domain KI609_17320 PF02769 AIR synthase related protein, C-terminal domain KI609_17330 PF00672 HAMP domain KI609_17330 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain KI609_17330 PF17200 Single Cache domain 2 KI609_17345 PF01965 DJ-1/PfpI family KI609_17350 PF02311 AraC-like ligand binding domain KI609_17350 PF12833 Helix-turn-helix domain KI609_17355 PF03976 Polyphosphate kinase 2 (PPK2) KI609_17370 PF13369 Transglutaminase-like superfamily KI609_17375 PF03023 Lipid II flippase MurJ KI609_17380 PF01649 Ribosomal protein S20 KI609_17390 PF00202 Aminotransferase class-III KI609_17395 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain KI609_17395 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain KI609_17405 PF07670 Nucleoside recognition KI609_17405 PF02421 Ferrous iron transport protein B KI609_17405 PF07664 Ferrous iron transport protein B C terminus KI609_17415 PF03692 Putative zinc- or iron-chelating domain KI609_17420 PF04199 Putative cyclase KI609_17425 PF00266 Aminotransferase class-V KI609_17430 PF03301 Tryptophan 2,3-dioxygenase KI609_17440 PF07690 Major Facilitator Superfamily KI609_17445 PF01494 FAD binding domain KI609_17450 PF00563 EAL domain KI609_17450 PF00990 Diguanylate cyclase, GGDEF domain KI609_17450 PF03707 Bacterial signalling protein N terminal repeat KI609_17455 PF03707 Bacterial signalling protein N terminal repeat KI609_17455 PF00563 EAL domain KI609_17455 PF00990 Diguanylate cyclase, GGDEF domain KI609_17460 PF00330 Aconitase family (aconitate hydratase) KI609_17460 PF00694 Aconitase C-terminal domain KI609_17465 PF00816 H-NS histone family KI609_17470 PF00149 Calcineurin-like phosphoesterase KI609_17475 PF02424 ApbE family KI609_17480 PF13442 Cytochrome C oxidase, cbb3-type, subunit III KI609_17490 PF13473 Cupredoxin-like domain KI609_17490 PF18764 Nitrous oxide reductase propeller repeat KI609_17490 PF18793 Nitrous oxide reductase propeller repeat 2 KI609_17495 PF12801 4Fe-4S binding domain KI609_17495 PF04205 FMN-binding domain KI609_17500 PF05048 Periplasmic copper-binding protein (NosD) KI609_17505 PF00005 ABC transporter KI609_17510 PF12679 ABC-2 family transporter protein KI609_17525 PF00271 Helicase conserved C-terminal domain KI609_17525 PF00270 DEAD/DEAH box helicase KI609_17530 PF04228 Putative neutral zinc metallopeptidase KI609_17535 PF00990 Diguanylate cyclase, GGDEF domain KI609_17545 PF00692 dUTPase KI609_17550 PF01979 Amidohydrolase family KI609_17555 PF03401 Tripartite tricarboxylate transporter family receptor KI609_17560 PF00501 AMP-binding enzyme KI609_17560 PF13193 AMP-binding enzyme C-terminal domain KI609_17565 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain KI609_17565 PF00672 HAMP domain KI609_17565 PF02203 Tar ligand binding domain homologue KI609_17570 PF00962 Adenosine/AMP deaminase KI609_17575 PF02608 ABC transporter substrate-binding protein PnrA-like KI609_17585 PF02653 Branched-chain amino acid transport system / permease component KI609_17590 PF00005 ABC transporter KI609_17595 PF03466 LysR substrate binding domain KI609_17595 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KI609_17600 PF01799 [2Fe-2S] binding domain KI609_17600 PF00111 2Fe-2S iron-sulfur cluster binding domain KI609_17600 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain KI609_17600 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase KI609_17605 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase KI609_17605 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain KI609_17610 PF08447 PAS fold KI609_17610 PF00563 EAL domain KI609_17610 PF00990 Diguanylate cyclase, GGDEF domain KI609_17610 PF08448 PAS fold KI609_17610 PF13426 PAS domain KI609_17610 PF05231 MASE1 KI609_17620 PF13609 Gram-negative porin KI609_17625 PF13660 Domain of unknown function (DUF4147) KI609_17625 PF05161 MOFRL family KI609_17630 PF13188 PAS domain KI609_17630 PF03707 Bacterial signalling protein N terminal repeat KI609_17630 PF00990 Diguanylate cyclase, GGDEF domain KI609_17630 PF00563 EAL domain KI609_17650 PF00576 HIUase/Transthyretin family KI609_17655 PF07729 FCD domain KI609_17655 PF00392 Bacterial regulatory proteins, gntR family KI609_17665 PF07687 Peptidase dimerisation domain KI609_17665 PF01546 Peptidase family M20/M25/M40 KI609_17670 PF01546 Peptidase family M20/M25/M40 KI609_17670 PF07687 Peptidase dimerisation domain KI609_17680 PF01515 Phosphate acetyl/butaryl transferase KI609_17680 PF03949 Malic enzyme, NAD binding domain KI609_17680 PF00390 Malic enzyme, N-terminal domain KI609_17690 PF00005 ABC transporter KI609_17695 PF00528 Binding-protein-dependent transport system inner membrane component KI609_17700 PF01774 UreD urease accessory protein KI609_17710 PF00155 Aminotransferase class I and II KI609_17715 PF13609 Gram-negative porin KI609_17720 PF07690 Major Facilitator Superfamily KI609_17725 PF00072 Response regulator receiver domain KI609_17725 PF00211 Adenylate and Guanylate cyclase catalytic domain KI609_17735 PF00781 Diacylglycerol kinase catalytic domain KI609_17740 PF01569 PAP2 superfamily KI609_17745 PF00005 ABC transporter KI609_17750 PF00005 ABC transporter KI609_17750 PF12399 Branched-chain amino acid ATP-binding cassette transporter KI609_17755 PF02653 Branched-chain amino acid transport system / permease component KI609_17760 PF02653 Branched-chain amino acid transport system / permease component KI609_17770 PF00563 EAL domain KI609_17770 PF01590 GAF domain KI609_17770 PF00990 Diguanylate cyclase, GGDEF domain KI609_17770 PF00360 Phytochrome region KI609_17785 PF00689 Cation transporting ATPase, C-terminus KI609_17785 PF00690 Cation transporter/ATPase, N-terminus KI609_17805 PF00072 Response regulator receiver domain KI609_17810 PF00072 Response regulator receiver domain KI609_17810 PF00512 His Kinase A (phospho-acceptor) domain KI609_17810 PF01627 Hpt domain KI609_17810 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KI609_17815 PF00547 Urease, gamma subunit KI609_17820 PF04955 HupE / UreJ protein KI609_17825 PF00699 Urease beta subunit KI609_17830 PF00449 Urease alpha-subunit, N-terminal domain KI609_17830 PF01979 Amidohydrolase family KI609_17840 PF05194 UreE urease accessory protein, C-terminal domain KI609_17840 PF02814 UreE urease accessory protein, N-terminal domain KI609_17845 PF01730 UreF KI609_17850 PF02492 CobW/HypB/UreG, nucleotide-binding domain KI609_17885 PF06969 HemN C-terminal domain KI609_17885 PF04055 Radical SAM superfamily KI609_17890 PF01725 Ham1 family KI609_17895 PF01138 3' exoribonuclease family, domain 1 KI609_17895 PF03725 3' exoribonuclease family, domain 2 KI609_17905 PF03793 PASTA domain KI609_17905 PF00069 Protein kinase domain KI609_17910 PF08340 Domain of unknown function (DUF1732) KI609_17910 PF03755 YicC-like family, N-terminal region KI609_17915 PF00625 Guanylate kinase KI609_17920 PF01192 RNA polymerase Rpb6 KI609_17925 PF13291 ACT domain KI609_17925 PF02824 TGS domain KI609_17925 PF04607 Region found in RelA / SpoT proteins KI609_17930 PF01272 Transcription elongation factor, GreA/GreB, C-term KI609_17930 PF03449 Transcription elongation factor, N-terminal KI609_17945 PF03444 Winged helix-turn-helix transcription repressor, HrcA DNA-binding KI609_17945 PF01628 HrcA protein C terminal domain KI609_17950 PF01513 ATP-NAD kinase KI609_17955 PF02463 RecF/RecN/SMC N terminal domain KI609_17960 PF03668 P-loop ATPase protein family KI609_17965 PF10576 Iron-sulfur binding domain of endonuclease III KI609_17965 PF00633 Helix-hairpin-helix motif KI609_17965 PF00730 HhH-GPD superfamily base excision DNA repair protein KI609_17965 PF14815 NUDIX domain KI609_17975 PF06827 Zinc finger found in FPG and IleRS KI609_17975 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain KI609_17975 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain KI609_17985 PF03550 Outer membrane lipoprotein LolB KI609_17990 PF08544 GHMP kinases C terminal KI609_17990 PF00288 GHMP kinases N terminal domain KI609_18000 PF14572 Phosphoribosyl synthetase-associated domain KI609_18000 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase KI609_18005 PF01386 Ribosomal L25p family KI609_18005 PF14693 Ribosomal protein TL5, C-terminal domain KI609_18010 PF01195 Peptidyl-tRNA hydrolase KI609_18015 PF00037 4Fe-4S binding domain KI609_18020 PF00528 Binding-protein-dependent transport system inner membrane component KI609_18025 PF00528 Binding-protein-dependent transport system inner membrane component KI609_18025 PF12911 N-terminal TM domain of oligopeptide transport permease C KI609_18030 PF00005 ABC transporter KI609_18030 PF08352 Oligopeptide/dipeptide transporter, C-terminal region KI609_18035 PF00005 ABC transporter KI609_18035 PF08352 Oligopeptide/dipeptide transporter, C-terminal region KI609_18040 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle KI609_18045 PF01425 Amidase KI609_18060 PF05598 Transposase domain (DUF772) KI609_18060 PF01609 Transposase DDE domain KI609_18070 PF00300 Histidine phosphatase superfamily (branch 1) KI609_18095 PF01227 GTP cyclohydrolase I KI609_18100 PF13091 PLD-like domain KI609_18110 PF00072 Response regulator receiver domain KI609_18125 PF02938 GAD domain KI609_18125 PF00152 tRNA synthetases class II (D, K and N) KI609_18125 PF01336 OB-fold nucleic acid binding domain KI609_18150 PF03109 ABC1 family KI609_18165 PF01209 ubiE/COQ5 methyltransferase family KI609_18185 PF01842 ACT domain KI609_18185 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain KI609_18185 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain KI609_18190 PF13416 Bacterial extracellular solute-binding protein KI609_18195 PF00528 Binding-protein-dependent transport system inner membrane component KI609_18200 PF00528 Binding-protein-dependent transport system inner membrane component KI609_18205 PF00005 ABC transporter KI609_18205 PF17912 MalK OB fold domain KI609_18215 PF03009 Glycerophosphoryl diester phosphodiesterase family KI609_18220 PF00924 Mechanosensitive ion channel KI609_18220 PF12795 Mechanosensitive ion channel porin domain KI609_18220 PF12794 Mechanosensitive ion channel inner membrane domain 1 KI609_18230 PF01488 Shikimate / quinate 5-dehydrogenase KI609_18230 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain KI609_18230 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain KI609_18235 PF00472 RF-1 domain KI609_18235 PF03462 PCRF domain KI609_18240 PF05175 Methyltransferase small domain KI609_18240 PF17827 PrmC N-terminal domain KI609_18245 PF00462 Glutaredoxin KI609_18250 PF05362 Lon protease (S16) C-terminal proteolytic domain KI609_18250 PF00004 ATPase family associated with various cellular activities (AAA) KI609_18250 PF02190 ATP-dependent protease La (LON) substrate-binding domain KI609_18255 PF01595 Cyclin M transmembrane N-terminal domain KI609_18255 PF03471 Transporter associated domain KI609_18255 PF00571 CBS domain KI609_18260 PF11873 Membrane-bound lytic murein transglycosylase C, N-terminal domain KI609_18260 PF01464 Transglycosylase SLT domain KI609_18265 PF03129 Anticodon binding domain KI609_18265 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) KI609_18265 PF04073 Aminoacyl-tRNA editing domain KI609_18270 PF00293 NUDIX domain KI609_18275 PF01472 PUA domain KI609_18275 PF00696 Amino acid kinase family KI609_18280 PF01926 50S ribosome-binding GTPase KI609_18280 PF01018 GTP1/OBG KI609_18285 PF01016 Ribosomal L27 protein KI609_18290 PF00829 Ribosomal prokaryotic L21 protein KI609_18295 PF00348 Polyprenyl synthetase KI609_18305 PF00437 Type II/IV secretion system protein KI609_18305 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain KI609_18310 PF00482 Type II secretion system (T2SS), protein F KI609_18315 PF06750 Bacterial Peptidase A24 N-terminal domain KI609_18315 PF01478 Type IV leader peptidase family KI609_18320 PF01121 Dephospho-CoA kinase KI609_18325 PF07072 Cell division protein KI609_18330 PF03884 DNA gyrase inhibitor YacG KI609_18335 PF00293 NUDIX domain KI609_18345 PF01960 ArgJ family KI609_18350 PF01043 SecA preprotein cross-linking domain KI609_18350 PF02810 SEC-C motif KI609_18350 PF07517 SecA DEAD-like domain KI609_18350 PF07516 SecA Wing and Scaffold domain KI609_18355 PF01551 Peptidase family M23 KI609_18355 PF08525 Opacity-associated protein A N-terminal motif KI609_18355 PF01476 LysM domain KI609_18370 PF04386 Stringent starvation protein B KI609_18375 PF02798 Glutathione S-transferase, N-terminal domain KI609_18375 PF00043 Glutathione S-transferase, C-terminal domain KI609_18380 PF02167 Cytochrome C1 family KI609_18385 PF00032 Cytochrome b(C-terminal)/b6/petD KI609_18385 PF00033 Cytochrome b/b6/petB KI609_18390 PF00355 Rieske [2Fe-2S] domain KI609_18390 PF10399 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal KI609_18395 PF01741 Large-conductance mechanosensitive channel, MscL KI609_18400 PF04166 Pyridoxal phosphate biosynthetic protein PdxA KI609_18405 PF01784 NIF3 (NGG1p interacting factor 3) KI609_18410 PF13180 PDZ domain KI609_18415 PF00902 Sec-independent protein translocase protein (TatC) KI609_18420 PF02416 mttA/Hcf106 family KI609_18425 PF02416 mttA/Hcf106 family KI609_18430 PF01230 HIT domain KI609_18445 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase KI609_18450 PF01502 Phosphoribosyl-AMP cyclohydrolase KI609_18455 PF00977 Histidine biosynthesis protein KI609_18460 PF16363 GDP-mannose 4,6 dehydratase KI609_18485 PF00977 Histidine biosynthesis protein KI609_18490 PF00117 Glutamine amidotransferase class-I KI609_18495 PF00475 Imidazoleglycerol-phosphate dehydratase KI609_18500 PF00155 Aminotransferase class I and II KI609_18515 PF00155 Aminotransferase class I and II KI609_18515 PF00392 Bacterial regulatory proteins, gntR family KI609_18530 PF00815 Histidinol dehydrogenase KI609_18535 PF01634 ATP phosphoribosyltransferase KI609_18540 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) KI609_18545 PF01722 BolA-like protein KI609_18550 PF01061 ABC-2 type transporter KI609_18555 PF00005 ABC transporter KI609_18570 PF04333 MlaA lipoprotein KI609_18575 PF02470 MlaD protein KI609_18580 PF02405 Permease MlaE KI609_18585 PF00005 ABC transporter KI609_18590 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster KI609_18590 PF07992 Pyridine nucleotide-disulphide oxidoreductase KI609_18595 PF04898 Glutamate synthase central domain KI609_18595 PF00310 Glutamine amidotransferases class-II KI609_18595 PF01493 GXGXG motif KI609_18595 PF01645 Conserved region in glutamate synthase KI609_18615 PF13286 Phosphohydrolase-associated domain KI609_18615 PF01966 HD domain KI609_18620 PF01761 3-dehydroquinate synthase KI609_18630 PF03958 Bacterial type II/III secretion system short domain KI609_18630 PF07660 Secretin and TonB N terminus short domain KI609_18630 PF11741 AMIN domain KI609_18630 PF00263 Bacterial type II and III secretion system protein KI609_18645 PF05137 Fimbrial assembly protein (PilN) KI609_18650 PF11104 Type IV pilus assembly protein PilM; KI609_18655 PF00912 Transglycosylase KI609_18655 PF00905 Penicillin binding protein transpeptidase domain KI609_18655 PF17092 Penicillin-binding protein OB-like domain KI609_18660 PF01491 Frataxin-like domain KI609_18675 PF01794 Ferric reductase like transmembrane component KI609_18680 PF00174 Oxidoreductase molybdopterin binding domain KI609_18685 PF01578 Cytochrome C assembly protein KI609_18690 PF05140 ResB-like family KI609_18695 PF13442 Cytochrome C oxidase, cbb3-type, subunit III KI609_18710 PF03279 Bacterial lipid A biosynthesis acyltransferase KI609_18720 PF02773 S-adenosylmethionine synthetase, C-terminal domain KI609_18720 PF02772 S-adenosylmethionine synthetase, central domain KI609_18720 PF00438 S-adenosylmethionine synthetase, N-terminal domain KI609_18735 PF00990 Diguanylate cyclase, GGDEF domain KI609_18735 PF00072 Response regulator receiver domain KI609_18740 PF01467 Cytidylyltransferase-like KI609_18740 PF00293 NUDIX domain KI609_18750 PF00118 TCP-1/cpn60 chaperonin family KI609_18755 PF00166 Chaperonin 10 Kd subunit KI609_18765 PF00296 Luciferase-like monooxygenase KI609_18775 PF00482 Type II secretion system (T2SS), protein F KI609_18800 PF00664 ABC transporter transmembrane region KI609_18800 PF00005 ABC transporter KI609_18805 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain KI609_18805 PF02875 Mur ligase family, glutamate ligase domain KI609_18805 PF08245 Mur ligase middle domain KI609_18810 PF02875 Mur ligase family, glutamate ligase domain KI609_18810 PF08443 RimK-like ATP-grasp domain KI609_18810 PF08245 Mur ligase middle domain KI609_18815 PF05981 CreA protein KI609_18835 PF02075 Crossover junction endodeoxyribonuclease RuvC KI609_18840 PF01062 Bestrophin, RFP-TM, chloride channel KI609_18845 PF02525 Flavodoxin-like fold KI609_18855 PF03972 MmgE/PrpD family KI609_18870 PF02803 Thiolase, C-terminal domain KI609_18870 PF00108 Thiolase, N-terminal domain KI609_18875 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain KI609_18875 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain KI609_18875 PF00378 Enoyl-CoA hydratase/isomerase KI609_18880 PF13380 CoA binding domain KI609_18880 PF13607 Succinyl-CoA ligase like flavodoxin domain KI609_18885 PF00378 Enoyl-CoA hydratase/isomerase KI609_18890 PF03401 Tripartite tricarboxylate transporter family receptor KI609_18895 PF09339 IclR helix-turn-helix domain KI609_18900 PF16527 Two-component sensor protein CpxA, periplasmic domain KI609_18900 PF00672 HAMP domain KI609_18900 PF00512 His Kinase A (phospho-acceptor) domain KI609_18900 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KI609_18905 PF00072 Response regulator receiver domain KI609_18905 PF00486 Transcriptional regulatory protein, C terminal KI609_18910 PF02321 Outer membrane efflux protein KI609_18915 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion KI609_18920 PF00873 AcrB/AcrD/AcrF family KI609_18935 PF07883 Cupin domain KI609_18945 PF00155 Aminotransferase class I and II KI609_18945 PF00392 Bacterial regulatory proteins, gntR family KI609_18950 PF03594 Benzoate membrane transport protein KI609_18955 PF01168 Alanine racemase, N-terminal domain KI609_18970 PF01050 Mannose-6-phosphate isomerase KI609_18970 PF00483 Nucleotidyl transferase KI609_19070 PF00106 short chain dehydrogenase KI609_19075 PF01565 FAD binding domain KI609_19075 PF04030 D-arabinono-1,4-lactone oxidase KI609_19080 PF01040 UbiA prenyltransferase family KI609_19100 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KI609_19100 PF03466 LysR substrate binding domain KI609_19105 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase KI609_19105 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase KI609_19110 PF00171 Aldehyde dehydrogenase family KI609_19115 PF03401 Tripartite tricarboxylate transporter family receptor KI609_19130 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase KI609_19130 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase KI609_19135 PF12697 Alpha/beta hydrolase family KI609_19145 PF05145 Transition state regulatory protein AbrB KI609_19150 PF03972 MmgE/PrpD family KI609_19155 PF02770 Acyl-CoA dehydrogenase, middle domain KI609_19155 PF02771 Acyl-CoA dehydrogenase, N-terminal domain KI609_19155 PF00441 Acyl-CoA dehydrogenase, C-terminal domain KI609_19160 PF03401 Tripartite tricarboxylate transporter family receptor KI609_19165 PF13380 CoA binding domain KI609_19165 PF13607 Succinyl-CoA ligase like flavodoxin domain KI609_19175 PF00378 Enoyl-CoA hydratase/isomerase KI609_19175 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain KI609_19175 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain KI609_19180 PF02803 Thiolase, C-terminal domain KI609_19180 PF00108 Thiolase, N-terminal domain KI609_19185 PF01012 Electron transfer flavoprotein domain KI609_19190 PF00766 Electron transfer flavoprotein FAD-binding domain KI609_19190 PF01012 Electron transfer flavoprotein domain KI609_19260 PF00665 Integrase core domain KI609_19315 PF05598 Transposase domain (DUF772) KI609_19315 PF01609 Transposase DDE domain KI609_19325 PF00376 MerR family regulatory protein KI609_19325 PF09278 MerR, DNA binding KI609_19385 PF02371 Transposase IS116/IS110/IS902 family KI609_19385 PF01548 Transposase KI609_19410 PF13361 UvrD-like helicase C-terminal domain KI609_19410 PF00580 UvrD/REP helicase N-terminal domain KI609_19410 PF12705 PD-(D/E)XK nuclease superfamily KI609_19415 PF02463 RecF/RecN/SMC N terminal domain KI609_19420 PF01380 SIS domain KI609_19425 PF01037 Lrp/AsnC ligand binding domain KI609_19430 PF00226 DnaJ domain KI609_19430 PF01556 DnaJ C terminal domain KI609_19440 PF00990 Diguanylate cyclase, GGDEF domain KI609_19440 PF05230 MASE2 domain KI609_19445 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KI609_19445 PF13492 GAF domain KI609_19445 PF02702 Osmosensitive K+ channel His kinase sensor domain KI609_19445 PF00512 His Kinase A (phospho-acceptor) domain KI609_19445 PF13493 Domain of unknown function (DUF4118) KI609_19450 PF00132 Bacterial transferase hexapeptide (six repeats) KI609_19450 PF12804 MobA-like NTP transferase domain KI609_19455 PF00027 Cyclic nucleotide-binding domain KI609_19455 PF13545 Crp-like helix-turn-helix domain KI609_19465 PF00109 Beta-ketoacyl synthase, N-terminal domain KI609_19465 PF02801 Beta-ketoacyl synthase, C-terminal domain KI609_19485 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KI609_19485 PF03466 LysR substrate binding domain KI609_19490 PF01479 S4 domain KI609_19490 PF00579 tRNA synthetases class I (W and Y) KI609_19495 PF01551 Peptidase family M23 KI609_19495 PF04225 Opacity-associated protein A LysM-like domain KI609_19500 PF03702 Anhydro-N-acetylmuramic acid kinase KI609_19505 PF07690 Major Facilitator Superfamily KI609_19510 PF01521 Iron-sulphur cluster biosynthesis KI609_19525 PF00380 Ribosomal protein S9/S16 KI609_19530 PF00572 Ribosomal protein L13 KI609_19535 PF08308 PEGA domain KI609_19535 PF00069 Protein kinase domain KI609_19540 PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ KI609_19545 PF03330 Lytic transglycolase KI609_19550 PF02219 Methylenetetrahydrofolate reductase KI609_19555 PF01728 FtsJ-like methyltransferase KI609_19555 PF01479 S4 domain KI609_19560 PF05221 S-adenosyl-L-homocysteine hydrolase KI609_19560 PF00670 S-adenosyl-L-homocysteine hydrolase, NAD binding domain KI609_19565 PF00009 Elongation factor Tu GTP binding domain KI609_19565 PF03144 Elongation factor Tu domain 2 KI609_19565 PF16658 Class II release factor RF3, C-terminal domain KI609_19570 PF01757 Acyltransferase family KI609_19585 PF01757 Acyltransferase family KI609_19600 PF05025 RbsD / FucU transport protein family KI609_19605 PF00005 ABC transporter KI609_19610 PF02653 Branched-chain amino acid transport system / permease component KI609_19615 PF13407 Periplasmic binding protein domain KI609_19620 PF00294 pfkB family carbohydrate kinase KI609_19630 PF03401 Tripartite tricarboxylate transporter family receptor KI609_19635 PF01037 Lrp/AsnC ligand binding domain KI609_19635 PF13404 AsnC-type helix-turn-helix domain KI609_19650 PF00005 ABC transporter KI609_19650 PF17755 UvrA DNA-binding domain KI609_19650 PF17760 UvrA interaction domain KI609_19655 PF13458 Periplasmic binding protein KI609_19665 PF08946 Osmosensory transporter coiled coil KI609_19665 PF00083 Sugar (and other) transporter KI609_19670 PF01323 DSBA-like thioredoxin domain KI609_19685 PF13609 Gram-negative porin KI609_19690 PF00682 HMGL-like KI609_19695 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain KI609_19700 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain KI609_19700 PF02785 Biotin carboxylase C-terminal domain KI609_19700 PF00289 Biotin carboxylase, N-terminal domain KI609_19700 PF00364 Biotin-requiring enzyme KI609_19710 PF00378 Enoyl-CoA hydratase/isomerase KI609_19715 PF05163 DinB family KI609_19720 PF01039 Carboxyl transferase domain KI609_19725 PF13193 AMP-binding enzyme C-terminal domain KI609_19725 PF00501 AMP-binding enzyme KI609_19750 PF13419 Haloacid dehalogenase-like hydrolase KI609_19770 PF00561 alpha/beta hydrolase fold KI609_19775 PF00441 Acyl-CoA dehydrogenase, C-terminal domain KI609_19775 PF02771 Acyl-CoA dehydrogenase, N-terminal domain KI609_19775 PF02770 Acyl-CoA dehydrogenase, middle domain KI609_19780 PF00106 short chain dehydrogenase KI609_19795 PF00108 Thiolase, N-terminal domain KI609_19795 PF02803 Thiolase, C-terminal domain KI609_19800 PF06315 Isocitrate dehydrogenase kinase/phosphatase (AceK) KI609_19805 PF00484 Carbonic anhydrase KI609_19810 PF02771 Acyl-CoA dehydrogenase, N-terminal domain KI609_19810 PF02770 Acyl-CoA dehydrogenase, middle domain KI609_19810 PF00441 Acyl-CoA dehydrogenase, C-terminal domain KI609_19820 PF13411 MerR HTH family regulatory protein KI609_19850 PF00005 ABC transporter KI609_19850 PF16326 ABC transporter C-terminal domain KI609_19850 PF12848 ABC transporter KI609_19855 PF00072 Response regulator receiver domain KI609_19855 PF01339 CheB methylesterase KI609_19860 PF03975 CheD chemotactic sensory transduction KI609_19865 PF01739 CheR methyltransferase, SAM binding domain KI609_19865 PF03705 CheR methyltransferase, all-alpha domain KI609_19870 PF01584 CheW-like domain KI609_19875 PF09078 CheY binding KI609_19875 PF02895 Signal transducing histidine kinase, homodimeric domain KI609_19875 PF01584 CheW-like domain KI609_19875 PF01627 Hpt domain KI609_19875 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KI609_19880 PF00072 Response regulator receiver domain KI609_19890 PF07730 Histidine kinase KI609_19890 PF17200 Single Cache domain 2 KI609_19895 PF00072 Response regulator receiver domain KI609_19895 PF00196 Bacterial regulatory proteins, luxR family KI609_19900 PF01311 Bacterial export proteins, family 1 KI609_19905 PF01313 Bacterial export proteins, family 3 KI609_19910 PF00813 FliP family KI609_19920 PF16973 Flagellar motor switch protein FliN N-terminal KI609_19920 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term KI609_19925 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term KI609_19925 PF02154 Flagellar motor switch protein FliM KI609_19945 PF18269 T3SS EscN ATPase C-terminal domain KI609_19945 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain KI609_19955 PF14841 FliG middle domain KI609_19955 PF14842 FliG N-terminal domain KI609_19955 PF01706 FliG C-terminal domain KI609_19960 PF01514 Secretory protein of YscJ/FliF family KI609_19960 PF08345 Flagellar M-ring protein C-terminal KI609_19965 PF02049 Flagellar hook-basal body complex protein FliE KI609_19975 PF02561 Flagellar protein FliS KI609_19980 PF07195 Flagellar hook-associated protein 2 C-terminus KI609_19980 PF02465 Flagellar hook-associated protein 2 N-terminus KI609_19980 PF07196 Flagellin hook IN motif KI609_19985 PF00700 Bacterial flagellin C-terminal helical region KI609_19985 PF00669 Bacterial flagellin N-terminal helical region KI609_19990 PF00669 Bacterial flagellin N-terminal helical region KI609_19990 PF00700 Bacterial flagellin C-terminal helical region KI609_19995 PF01618 MotA/TolQ/ExbB proton channel family KI609_20000 PF13677 Membrane MotB of proton-channel complex MotA/MotB KI609_20000 PF00691 OmpA family KI609_20005 PF00072 Response regulator receiver domain KI609_20010 PF04344 Chemotaxis phosphatase, CheZ KI609_20015 PF01312 FlhB HrpN YscU SpaS Family KI609_20020 PF00771 FHIPEP family KI609_20025 PF00448 SRP54-type protein, GTPase domain KI609_20035 PF04545 Sigma-70, region 4 KI609_20035 PF04539 Sigma-70 region 3 KI609_20035 PF04542 Sigma-70 region 2 KI609_20050 PF13144 Chaperone for flagella basal body P-ring formation KI609_20055 PF00460 Flagella basal body rod protein KI609_20060 PF00460 Flagella basal body rod protein KI609_20060 PF06429 Flagellar basal body rod FlgEFG protein C-terminal KI609_20065 PF03963 Flagellar hook capping protein - N-terminal region KI609_20065 PF13861 FlgD Tudor-like domain KI609_20065 PF13860 FlgD Ig-like domain KI609_20070 PF06429 Flagellar basal body rod FlgEFG protein C-terminal KI609_20070 PF00460 Flagella basal body rod protein KI609_20070 PF07559 Flagellar basal body protein FlaE KI609_20075 PF06429 Flagellar basal body rod FlgEFG protein C-terminal KI609_20075 PF00460 Flagella basal body rod protein KI609_20080 PF06429 Flagellar basal body rod FlgEFG protein C-terminal KI609_20080 PF00460 Flagella basal body rod protein KI609_20085 PF02107 Flagellar L-ring protein KI609_20090 PF02119 Flagellar P-ring protein KI609_20095 PF10135 Rod binding protein KI609_20095 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase KI609_20105 PF00669 Bacterial flagellin N-terminal helical region KI609_20105 PF00700 Bacterial flagellin C-terminal helical region KI609_20115 PF00155 Aminotransferase class I and II KI609_20135 PF00155 Aminotransferase class I and II KI609_20140 PF13417 Glutathione S-transferase, N-terminal domain KI609_20140 PF00043 Glutathione S-transferase, C-terminal domain KI609_20145 PF02567 Phenazine biosynthesis-like protein KI609_20150 PF02567 Phenazine biosynthesis-like protein KI609_20160 PF01810 LysE type translocator KI609_20165 PF00291 Pyridoxal-phosphate dependent enzyme KI609_20175 PF04471 Restriction endonuclease KI609_20175 PF14338 Mrr N-terminal domain KI609_20190 PF02272 DHHA1 domain KI609_20190 PF01411 tRNA synthetases class II (A) KI609_20190 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain KI609_20200 PF11412 Disulphide bond corrector protein DsbC KI609_20200 PF02683 Cytochrome C biogenesis protein transmembrane region KI609_20205 PF13380 CoA binding domain KI609_20210 PF05977 Transmembrane secretion effector KI609_20215 PF01208 Uroporphyrinogen decarboxylase (URO-D) KI609_20220 PF17764 3′ DNA-binding domain (3′BD) KI609_20220 PF18074 Primosomal protein N C-terminal domain KI609_20220 PF18319 PriA DNA helicase Cys-rich region (CRR) domain KI609_20220 PF00271 Helicase conserved C-terminal domain KI609_20220 PF00270 DEAD/DEAH box helicase KI609_20225 PF13194 Domain of unknown function (DUF4010) KI609_20250 PF03547 Membrane transport protein KI609_20260 PF13361 UvrD-like helicase C-terminal domain KI609_20260 PF00580 UvrD/REP helicase N-terminal domain KI609_20270 PF02253 Phospholipase A1 KI609_20285 PF01702 Queuine tRNA-ribosyltransferase KI609_20320 PF03435 Saccharopine dehydrogenase NADP binding domain KI609_20325 PF00892 EamA-like transporter family KI609_20330 PF01037 Lrp/AsnC ligand binding domain KI609_20335 PF00291 Pyridoxal-phosphate dependent enzyme KI609_20340 PF03401 Tripartite tricarboxylate transporter family receptor KI609_20345 PF00501 AMP-binding enzyme KI609_20345 PF01553 Acyltransferase KI609_20375 PF01266 FAD dependent oxidoreductase KI609_20385 PF03466 LysR substrate binding domain KI609_20385 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KI609_20390 PF01595 Cyclin M transmembrane N-terminal domain KI609_20390 PF00571 CBS domain KI609_20390 PF03471 Transporter associated domain KI609_20405 PF04314 Copper chaperone PCu(A)C KI609_20420 PF14497 Glutathione S-transferase, C-terminal domain KI609_20420 PF13417 Glutathione S-transferase, N-terminal domain KI609_20440 PF01914 MarC family integral membrane protein KI609_20445 PF02082 Transcriptional regulator KI609_20450 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KI609_20450 PF03466 LysR substrate binding domain KI609_20460 PF01196 Ribosomal protein L17 KI609_20465 PF01000 RNA polymerase Rpb3/RpoA insert domain KI609_20465 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain KI609_20465 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain KI609_20470 PF00163 Ribosomal protein S4/S9 N-terminal domain KI609_20470 PF01479 S4 domain KI609_20475 PF00411 Ribosomal protein S11 KI609_20480 PF00416 Ribosomal protein S13/S18 KI609_20485 PF00444 Ribosomal protein L36 KI609_20490 PF00344 SecY translocase KI609_20495 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A KI609_20500 PF00327 Ribosomal protein L30p/L7e KI609_20505 PF00333 Ribosomal protein S5, N-terminal domain KI609_20505 PF03719 Ribosomal protein S5, C-terminal domain KI609_20510 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast KI609_20515 PF00347 Ribosomal protein L6 KI609_20520 PF00410 Ribosomal protein S8 KI609_20525 PF00253 Ribosomal protein S14p/S29e KI609_20530 PF00281 Ribosomal protein L5 KI609_20530 PF00673 ribosomal L5P family C-terminus KI609_20535 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 KI609_20540 PF00238 Ribosomal protein L14p/L23e KI609_20545 PF01266 FAD dependent oxidoreductase KI609_20545 PF16901 C-terminal domain of alpha-glycerophosphate oxidase KI609_20560 PF00528 Binding-protein-dependent transport system inner membrane component KI609_20565 PF00528 Binding-protein-dependent transport system inner membrane component KI609_20570 PF08402 TOBE domain KI609_20570 PF00005 ABC transporter KI609_20575 PF17912 MalK OB fold domain KI609_20575 PF00005 ABC transporter KI609_20580 PF00455 DeoR C terminal sensor domain KI609_20580 PF08220 DeoR-like helix-turn-helix domain KI609_20585 PF00370 FGGY family of carbohydrate kinases, N-terminal domain KI609_20585 PF02782 FGGY family of carbohydrate kinases, C-terminal domain KI609_20590 PF14748 Pyrroline-5-carboxylate reductase dimerisation KI609_20590 PF03807 NADP oxidoreductase coenzyme F420-dependent KI609_20595 PF01040 UbiA prenyltransferase family KI609_20600 PF00512 His Kinase A (phospho-acceptor) domain KI609_20600 PF01627 Hpt domain KI609_20600 PF00072 Response regulator receiver domain KI609_20600 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) KI609_20600 PF00672 HAMP domain KI609_20600 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KI609_20605 PF01739 CheR methyltransferase, SAM binding domain KI609_20605 PF03705 CheR methyltransferase, all-alpha domain KI609_20610 PF01339 CheB methylesterase KI609_20615 PF00512 His Kinase A (phospho-acceptor) domain KI609_20615 PF00989 PAS fold KI609_20615 PF16736 Single Cache-like KI609_20615 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KI609_20620 PF00072 Response regulator receiver domain KI609_20620 PF00486 Transcriptional regulatory protein, C terminal KI609_20625 PF00210 Ferritin-like domain KI609_20630 PF07687 Peptidase dimerisation domain KI609_20630 PF01546 Peptidase family M20/M25/M40 KI609_20635 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KI609_20635 PF03466 LysR substrate binding domain KI609_20645 PF17191 RecG wedge domain KI609_20645 PF00270 DEAD/DEAH box helicase KI609_20645 PF00271 Helicase conserved C-terminal domain KI609_20650 PF11871 Domain of unknown function (DUF3391) KI609_20650 PF01966 HD domain KI609_20655 PF00294 pfkB family carbohydrate kinase KI609_20660 PF02547 Queuosine biosynthesis protein KI609_20675 PF03401 Tripartite tricarboxylate transporter family receptor KI609_20680 PF03466 LysR substrate binding domain KI609_20680 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KI609_20685 PF03167 Uracil DNA glycosylase superfamily KI609_20690 PF00218 Indole-3-glycerol phosphate synthase KI609_20700 PF02885 Glycosyl transferase family, helical bundle domain KI609_20700 PF00591 Glycosyl transferase family, a/b domain KI609_20705 PF01810 LysE type translocator KI609_20710 PF00117 Glutamine amidotransferase class-I KI609_20720 PF04715 Anthranilate synthase component I, N terminal region KI609_20720 PF00425 chorismate binding enzyme KI609_20730 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain KI609_20730 PF02203 Tar ligand binding domain homologue KI609_20730 PF00672 HAMP domain KI609_20735 PF13419 Haloacid dehalogenase-like hydrolase KI609_20765 PF00834 Ribulose-phosphate 3 epimerase family KI609_20770 PF04379 ApaG domain KI609_20785 PF04107 Glutamate-cysteine ligase family 2(GCS2) KI609_20790 PF00586 AIR synthase related protein, N-terminal domain KI609_20790 PF02769 AIR synthase related protein, C-terminal domain KI609_20795 PF03480 Bacterial extracellular solute-binding protein, family 7 KI609_20805 PF07167 Poly-beta-hydroxybutyrate polymerase (PhaC) N-terminus KI609_20805 PF00561 alpha/beta hydrolase fold KI609_20815 PF02321 Outer membrane efflux protein KI609_20820 PF13533 Biotin-lipoyl like KI609_20825 PF00005 ABC transporter KI609_20835 PF01515 Phosphate acetyl/butaryl transferase KI609_20840 PF00871 Acetokinase family KI609_20845 PF00582 Universal stress protein family KI609_20855 PF04608 Phosphatidylglycerophosphatase A KI609_20860 PF02464 Competence-damaged protein KI609_20865 PF00561 alpha/beta hydrolase fold KI609_20895 PF00916 Sulfate permease family KI609_20895 PF01740 STAS domain KI609_20900 PF02810 SEC-C motif KI609_20900 PF07517 SecA DEAD-like domain KI609_20900 PF01043 SecA preprotein cross-linking domain KI609_20900 PF07516 SecA Wing and Scaffold domain KI609_20905 PF01645 Conserved region in glutamate synthase KI609_20915 PF06472 ABC transporter transmembrane region 2 KI609_20915 PF00005 ABC transporter KI609_20925 PF01170 Putative RNA methylase family UPF0020 KI609_20925 PF02926 THUMP domain KI609_20935 PF00309 Sigma-54 factor, Activator interacting domain (AID) KI609_20935 PF04963 Sigma-54 factor, core binding domain KI609_20935 PF04552 Sigma-54, DNA binding domain KI609_20940 PF00005 ABC transporter KI609_20950 PF13462 Thioredoxin KI609_20960 PF03485 Arginyl tRNA synthetase N terminal domain KI609_20960 PF05746 DALR anticodon binding domain KI609_20960 PF00750 tRNA synthetases class I (R) KI609_20975 PF00375 Sodium:dicarboxylate symporter family KI609_20980 PF00512 His Kinase A (phospho-acceptor) domain KI609_20980 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KI609_20985 PF00196 Bacterial regulatory proteins, luxR family KI609_20985 PF00072 Response regulator receiver domain KI609_20990 PF03466 LysR substrate binding domain KI609_20990 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KI609_20995 PF01274 Malate synthase KI609_21000 PF02203 Tar ligand binding domain homologue KI609_21000 PF00672 HAMP domain KI609_21000 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain KI609_21010 PF01361 Tautomerase enzyme KI609_21015 PF07690 Major Facilitator Superfamily KI609_21020 PF13230 Glutamine amidotransferases class-II KI609_21075 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain KI609_21075 PF02951 Prokaryotic glutathione synthetase, N-terminal domain KI609_21080 PF03594 Benzoate membrane transport protein KI609_21085 PF02705 K+ potassium transporter KI609_21095 PF02386 Cation transport protein KI609_21100 PF02254 TrkA-N domain KI609_21100 PF02080 TrkA-C domain KI609_21105 PF00171 Aldehyde dehydrogenase family KI609_21125 PF00491 Arginase family KI609_21130 PF05598 Transposase domain (DUF772) KI609_21130 PF01609 Transposase DDE domain KI609_21140 PF09334 tRNA synthetases class I (M) KI609_21140 PF13603 Leucyl-tRNA synthetase, Domain 2 KI609_21140 PF00133 tRNA synthetases class I (I, L, M and V) KI609_21140 PF08264 Anticodon-binding domain of tRNA KI609_21145 PF02472 Biopolymer transport protein ExbD/TolR KI609_21155 PF05173 Dihydrodipicolinate reductase, C-terminus KI609_21155 PF01113 Dihydrodipicolinate reductase, N-terminus KI609_21160 PF04355 SmpA / OmlA family KI609_21165 PF01475 Ferric uptake regulator family KI609_21170 PF07475 HPr Serine kinase C-terminal domain KI609_21170 PF02603 HPr Serine kinase N terminus KI609_21175 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 KI609_21180 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein KI609_21185 PF01259 SAICAR synthetase KI609_21195 PF00085 Thioredoxin KI609_21200 PF01965 DJ-1/PfpI family KI609_21210 PF00731 AIR carboxylase KI609_21215 PF02222 ATP-grasp domain KI609_21215 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain KI609_21220 PF03481 Putative GTP-binding controlling metal-binding KI609_21220 PF01300 Telomere recombination KI609_21230 PF03922 OmpW family KI609_21245 PF04193 PQ loop repeat KI609_21250 PF02113 D-Ala-D-Ala carboxypeptidase 3 (S13) family KI609_21255 PF00672 HAMP domain KI609_21255 PF02203 Tar ligand binding domain homologue KI609_21255 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain KI609_21265 PF00814 Glycoprotease family KI609_21270 PF00583 Acetyltransferase (GNAT) family KI609_21280 PF01544 CorA-like Mg2+ transporter protein KI609_21285 PF01048 Phosphorylase superfamily KI609_21290 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle KI609_21295 PF00005 ABC transporter KI609_21295 PF08352 Oligopeptide/dipeptide transporter, C-terminal region KI609_21300 PF00005 ABC transporter KI609_21300 PF08352 Oligopeptide/dipeptide transporter, C-terminal region KI609_21305 PF12911 N-terminal TM domain of oligopeptide transport permease C KI609_21305 PF00528 Binding-protein-dependent transport system inner membrane component KI609_21310 PF00528 Binding-protein-dependent transport system inner membrane component KI609_21315 PF00501 AMP-binding enzyme KI609_21315 PF13193 AMP-binding enzyme C-terminal domain KI609_21320 PF02233 NAD(P) transhydrogenase beta subunit KI609_21325 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch KI609_21325 PF05222 Alanine dehydrogenase/PNT, N-terminal domain KI609_21325 PF01262 Alanine dehydrogenase/PNT, C-terminal domain KI609_21335 PF01116 Fructose-bisphosphate aldolase class-II KI609_21340 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KI609_21340 PF00512 His Kinase A (phospho-acceptor) domain KI609_21345 PF00486 Transcriptional regulatory protein, C terminal KI609_21345 PF00072 Response regulator receiver domain KI609_21355 PF01569 PAP2 superfamily KI609_21360 PF00224 Pyruvate kinase, barrel domain KI609_21360 PF02887 Pyruvate kinase, alpha/beta domain KI609_21370 PF05195 Aminopeptidase P, N-terminal domain KI609_21370 PF00557 Metallopeptidase family M24 KI609_21375 PF00483 Nucleotidyl transferase KI609_21380 PF02675 S-adenosylmethionine decarboxylase KI609_21385 PF02780 Transketolase, C-terminal domain KI609_21385 PF00456 Transketolase, thiamine diphosphate binding domain KI609_21385 PF02779 Transketolase, pyrimidine binding domain KI609_21390 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain KI609_21390 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain KI609_21395 PF00924 Mechanosensitive ion channel KI609_21405 PF05736 OprF membrane domain KI609_21405 PF00691 OmpA family KI609_21410 PF00248 Aldo/keto reductase family KI609_21425 PF01494 FAD binding domain KI609_21430 PF00574 Clp protease KI609_21435 PF01408 Oxidoreductase family, NAD-binding Rossmann fold KI609_21440 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase KI609_21445 PF07746 Aromatic-ring-opening dioxygenase LigAB, LigA subunit KI609_21450 PF04909 Amidohydrolase KI609_21455 PF03401 Tripartite tricarboxylate transporter family receptor KI609_21460 PF03737 Aldolase/RraA KI609_21465 PF04909 Amidohydrolase KI609_21475 PF03466 LysR substrate binding domain KI609_21475 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KI609_21480 PF03401 Tripartite tricarboxylate transporter family receptor KI609_21485 PF00005 ABC transporter KI609_21505 PF13458 Periplasmic binding protein KI609_21515 PF00355 Rieske [2Fe-2S] domain KI609_21520 PF00175 Oxidoreductase NAD-binding domain KI609_21520 PF00111 2Fe-2S iron-sulfur cluster binding domain KI609_21525 PF01569 PAP2 superfamily KI609_21530 PF00535 Glycosyl transferase family 2 KI609_21535 PF02366 Dolichyl-phosphate-mannose-protein mannosyltransferase KI609_21550 PF13006 Insertion element 4 transposase N-terminal KI609_21550 PF01609 Transposase DDE domain KI609_21560 PF07722 Peptidase C26 KI609_21565 PF00072 Response regulator receiver domain KI609_21570 PF00440 Bacterial regulatory proteins, tetR family KI609_21570 PF16925 Tetracyclin repressor-like, C-terminal domain KI609_21575 PF00106 short chain dehydrogenase KI609_21580 PF02803 Thiolase, C-terminal domain KI609_21580 PF00108 Thiolase, N-terminal domain KI609_21585 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase KI609_21590 PF00582 Universal stress protein family KI609_21595 PF02678 Pirin KI609_21595 PF05726 Pirin C-terminal cupin domain KI609_21600 PF07690 Major Facilitator Superfamily KI609_21625 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain KI609_21625 PF02203 Tar ligand binding domain homologue KI609_21625 PF00672 HAMP domain KI609_21630 PF13280 WYL domain KI609_21630 PF08279 HTH domain KI609_21650 PF00106 short chain dehydrogenase KI609_21655 PF03466 LysR substrate binding domain KI609_21655 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KI609_21665 PF03466 LysR substrate binding domain KI609_21665 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KI609_21695 PF03942 DTW domain KI609_21710 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle KI609_21715 PF00528 Binding-protein-dependent transport system inner membrane component KI609_21720 PF00528 Binding-protein-dependent transport system inner membrane component KI609_21720 PF12911 N-terminal TM domain of oligopeptide transport permease C KI609_21725 PF00005 ABC transporter KI609_21725 PF08352 Oligopeptide/dipeptide transporter, C-terminal region KI609_21730 PF00005 ABC transporter KI609_21730 PF08352 Oligopeptide/dipeptide transporter, C-terminal region KI609_21740 PF07687 Peptidase dimerisation domain KI609_21740 PF01546 Peptidase family M20/M25/M40 KI609_21745 PF01613 Flavin reductase like domain KI609_21750 PF06250 YhcG PDDEXK nuclease domain KI609_21750 PF17761 DUF1016 N-terminal domain KI609_21755 PF00149 Calcineurin-like phosphoesterase KI609_21755 PF12320 Type 5 capsule protein repressor C-terminal domain KI609_21760 PF13476 AAA domain KI609_21765 PF05598 Transposase domain (DUF772) KI609_21765 PF01609 Transposase DDE domain KI609_21785 PF03401 Tripartite tricarboxylate transporter family receptor KI609_21790 PF13350 Tyrosine phosphatase family KI609_21805 PF03009 Glycerophosphoryl diester phosphodiesterase family KI609_21820 PF01751 Toprim domain KI609_21820 PF01131 DNA topoisomerase KI609_21830 PF03099 Biotin/lipoate A/B protein ligase family KI609_21830 PF02237 Biotin protein ligase C terminal domain KI609_21830 PF08279 HTH domain KI609_21840 PF08521 Two-component sensor kinase N-terminal KI609_21840 PF00512 His Kinase A (phospho-acceptor) domain KI609_21840 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KI609_21845 PF00486 Transcriptional regulatory protein, C terminal KI609_21845 PF00072 Response regulator receiver domain KI609_21855 PF03401 Tripartite tricarboxylate transporter family receptor KI609_21865 PF00027 Cyclic nucleotide-binding domain KI609_21865 PF04960 Glutaminase KI609_21865 PF01740 STAS domain KI609_21870 PF00672 HAMP domain KI609_21870 PF02743 Cache domain KI609_21870 PF00211 Adenylate and Guanylate cyclase catalytic domain KI609_21885 PF00154 recA bacterial DNA recombination protein KI609_21890 PF02631 RecX family KI609_21895 PF00691 OmpA family KI609_21895 PF04972 BON domain KI609_21900 PF01118 Semialdehyde dehydrogenase, NAD binding domain KI609_21905 PF08442 ATP-grasp domain KI609_21905 PF00549 CoA-ligase KI609_21910 PF02629 CoA binding domain KI609_21910 PF00549 CoA-ligase KI609_21915 PF03741 Integral membrane protein TerC family KI609_21920 PF03793 PASTA domain KI609_21920 PF00069 Protein kinase domain KI609_21930 PF16697 Inner membrane component of T3SS, cytoplasmic domain KI609_21935 PF00211 Adenylate and Guanylate cyclase catalytic domain KI609_21940 PF12706 Beta-lactamase superfamily domain KI609_21945 PF07963 Prokaryotic N-terminal methylation motif KI609_21945 PF00114 Pilin (bacterial filament) KI609_21950 PF15864 Protein glycosylation ligase KI609_21950 PF04932 O-Antigen ligase KI609_21950 PF11846 Virulence factor membrane-bound polymerase, C-terminal KI609_21955 PF01967 MoaC family KI609_21965 PF13181 Tetratricopeptide repeat KI609_21965 PF01435 Peptidase family M48 KI609_21970 PF04020 Mycobacterial 4 TMS phage holin, superfamily IV KI609_21980 PF03741 Integral membrane protein TerC family KI609_21995 PF07152 YaeQ protein KI609_22005 PF08328 Adenylosuccinate lyase C-terminal KI609_22005 PF00206 Lyase KI609_22010 PF00043 Glutathione S-transferase, C-terminal domain KI609_22010 PF13417 Glutathione S-transferase, N-terminal domain KI609_22015 PF00440 Bacterial regulatory proteins, tetR family KI609_22015 PF17938 Tetracyclin repressor-like, C-terminal domain KI609_22020 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component KI609_22025 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component KI609_22030 PF03480 Bacterial extracellular solute-binding protein, family 7 KI609_22035 PF08501 Shikimate dehydrogenase substrate binding domain KI609_22035 PF18317 Shikimate 5'-dehydrogenase C-terminal domain KI609_22040 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily KI609_22045 PF01261 Xylose isomerase-like TIM barrel KI609_22045 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily KI609_22055 PF00106 short chain dehydrogenase KI609_22090 PF00255 Glutathione peroxidase KI609_22100 PF00873 AcrB/AcrD/AcrF family KI609_22105 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion KI609_22110 PF02321 Outer membrane efflux protein KI609_22120 PF08335 GlnD PII-uridylyltransferase KI609_22120 PF03710 Glutamate-ammonia ligase adenylyltransferase KI609_22130 PF00795 Carbon-nitrogen hydrolase KI609_22135 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KI609_22135 PF00512 His Kinase A (phospho-acceptor) domain KI609_22135 PF00989 PAS fold KI609_22140 PF00196 Bacterial regulatory proteins, luxR family KI609_22140 PF00072 Response regulator receiver domain KI609_22145 PF00691 OmpA family KI609_22175 PF00072 Response regulator receiver domain KI609_22175 PF00486 Transcriptional regulatory protein, C terminal KI609_22180 PF00512 His Kinase A (phospho-acceptor) domain KI609_22180 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KI609_22180 PF00672 HAMP domain KI609_22185 PF01609 Transposase DDE domain KI609_22185 PF05598 Transposase domain (DUF772) KI609_22205 PF00158 Sigma-54 interaction domain KI609_22205 PF01590 GAF domain KI609_22205 PF02954 Bacterial regulatory protein, Fis family KI609_22210 PF00171 Aldehyde dehydrogenase family KI609_22215 PF00465 Iron-containing alcohol dehydrogenase KI609_22225 PF02203 Tar ligand binding domain homologue KI609_22225 PF00672 HAMP domain KI609_22225 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain KI609_22235 PF00892 EamA-like transporter family KI609_22245 PF03401 Tripartite tricarboxylate transporter family receptor KI609_22250 PF03466 LysR substrate binding domain KI609_22250 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KI609_22255 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family KI609_22270 PF00162 Phosphoglycerate kinase KI609_22285 PF00551 Formyl transferase KI609_22285 PF02911 Formyl transferase, C-terminal domain KI609_22295 PF01327 Polypeptide deformylase KI609_22305 PF02481 DNA recombination-mediator protein A KI609_22305 PF17782 DprA winged helix domain KI609_22315 PF07549 SecD/SecF GG Motif KI609_22315 PF02355 Protein export membrane protein KI609_22320 PF07549 SecD/SecF GG Motif KI609_22320 PF13721 SecD export protein N-terminal TM region KI609_22320 PF02355 Protein export membrane protein KI609_22325 PF02699 Preprotein translocase subunit KI609_22335 PF01037 Lrp/AsnC ligand binding domain KI609_22340 PF05977 Transmembrane secretion effector KI609_22345 PF17755 UvrA DNA-binding domain KI609_22345 PF17760 UvrA interaction domain KI609_22355 PF07690 Major Facilitator Superfamily KI609_22360 PF00436 Single-strand binding protein family KI609_22365 PF02652 L-lactate permease KI609_22375 PF03466 LysR substrate binding domain KI609_22375 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KI609_22380 PF04303 PrpF protein KI609_22385 PF03401 Tripartite tricarboxylate transporter family receptor KI609_22390 PF13609 Gram-negative porin KI609_22410 PF03401 Tripartite tricarboxylate transporter family receptor KI609_22420 PF03466 LysR substrate binding domain KI609_22420 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KI609_22435 PF03401 Tripartite tricarboxylate transporter family receptor KI609_22450 PF00677 Lumazine binding domain KI609_22500 PF06429 Flagellar basal body rod FlgEFG protein C-terminal KI609_22500 PF00460 Flagella basal body rod protein KI609_22505 PF03466 LysR substrate binding domain KI609_22505 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KI609_22510 PF00202 Aminotransferase class-III KI609_22520 PF00171 Aldehyde dehydrogenase family KI609_22525 PF03949 Malic enzyme, NAD binding domain KI609_22525 PF01515 Phosphate acetyl/butaryl transferase KI609_22525 PF00390 Malic enzyme, N-terminal domain KI609_22530 PF00545 ribonuclease KI609_22545 PF00398 Ribosomal RNA adenine dimethylase KI609_22550 PF00639 PPIC-type PPIASE domain KI609_22550 PF09312 SurA N-terminal domain KI609_22555 PF04453 LPS transport system D KI609_22560 PF01636 Phosphotransferase enzyme family KI609_22565 PF04452 RNA methyltransferase KI609_22570 PF00990 Diguanylate cyclase, GGDEF domain KI609_22580 PF02771 Acyl-CoA dehydrogenase, N-terminal domain KI609_22580 PF02770 Acyl-CoA dehydrogenase, middle domain KI609_22580 PF00441 Acyl-CoA dehydrogenase, C-terminal domain KI609_22590 PF02321 Outer membrane efflux protein KI609_22600 PF00005 ABC transporter KI609_22610 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion KI609_22615 PF00440 Bacterial regulatory proteins, tetR family KI609_22625 PF00501 AMP-binding enzyme KI609_22625 PF13193 AMP-binding enzyme C-terminal domain KI609_22630 PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase KI609_22635 PF02441 Flavoprotein KI609_22640 PF08859 DGC domain KI609_22645 PF02036 SCP-2 sterol transfer family KI609_22650 PF03006 Haemolysin-III related KI609_22655 PF01136 Peptidase family U32 KI609_22660 PF01136 Peptidase family U32 KI609_22675 PF12146 Serine aminopeptidase, S33 KI609_22685 PF00990 Diguanylate cyclase, GGDEF domain KI609_22690 PF02203 Tar ligand binding domain homologue KI609_22690 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain KI609_22690 PF00672 HAMP domain KI609_22695 PF01261 Xylose isomerase-like TIM barrel KI609_22700 PF01609 Transposase DDE domain KI609_22700 PF05598 Transposase domain (DUF772) KI609_22705 PF03009 Glycerophosphoryl diester phosphodiesterase family KI609_22710 PF07021 Methionine biosynthesis protein MetW KI609_22710 PF00561 alpha/beta hydrolase fold KI609_22715 PF00561 alpha/beta hydrolase fold KI609_22720 PF01169 Uncharacterized protein family UPF0016 KI609_22725 PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) KI609_22730 PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) KI609_22735 PF00106 short chain dehydrogenase KI609_22750 PF00571 CBS domain KI609_22750 PF01380 SIS domain KI609_22755 PF02080 TrkA-C domain KI609_22755 PF02254 TrkA-N domain KI609_22755 PF00999 Sodium/hydrogen exchanger family KI609_22760 PF00563 EAL domain KI609_22760 PF03707 Bacterial signalling protein N terminal repeat KI609_22760 PF00990 Diguanylate cyclase, GGDEF domain KI609_22765 PF00156 Phosphoribosyl transferase domain KI609_22780 PF01926 50S ribosome-binding GTPase KI609_22780 PF12631 MnmE helical domain KI609_22780 PF10396 GTP-binding protein TrmE N-terminus KI609_22785 PF02096 60Kd inner membrane protein KI609_22785 PF14849 YidC periplasmic domain KI609_22790 PF01809 Putative membrane protein insertion efficiency factor KI609_22795 PF00825 Ribonuclease P KI609_22800 PF00468 Ribosomal protein L34