locus-tag	class	description
Ajs_0001	COG0791	NLP P60 protein
Ajs_0002	COG0722	Stereospecific condensation of phosphoenolpyruvate (PEP) and D-erythrose-4-phosphate (E4P) giving rise to 3-deoxy-D- arabino-heptulosonate-7-phosphate (DAHP)
Ajs_0008	COG2974	May be involved in recombination
Ajs_0009	COG1301	dicarboxylic acid transport
Ajs_0010	COG2205	protein histidine kinase activity
Ajs_0010	COG2198	Histidine kinase
Ajs_0010	COG0784	Response regulator, receiver
Ajs_0012	COG0700	Nucleoside recognition
Ajs_0014	COG0183	Belongs to the thiolase family
Ajs_0017	COG0789	Transcriptional regulator
Ajs_0020	COG0840	transmembrane signaling receptor activity
Ajs_0023	COG0625	glutathione transferase activity
Ajs_0026	COG0445	tRNA wobble uridine modification
Ajs_0027	COG0357	Ribosomal RNA small subunit methyltransferase G
Ajs_0029	COG1192	Involved in chromosome partitioning
Ajs_0031	COG1475	DNA binding
Ajs_0040	COG0277	FAD linked oxidase domain protein
Ajs_0043	COG2096	Adenosyltransferase
Ajs_0044	COG2050	protein possibly involved in aromatic compounds catabolism
Ajs_0048	COG2233	PERMEase
Ajs_0052	COG0654	COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases
Ajs_0054	COG0365	Catalyzes the conversion of acetate into acetyl-CoA (AcCoA), an essential intermediate at the junction of anabolic and catabolic pathways. AcsA undergoes a two-step reaction. In the first half reaction, AcsA combines acetate with ATP to form acetyl-adenylate (AcAMP) intermediate. In the second half reaction, it can then transfer the acetyl group from AcAMP to the sulfhydryl group of CoA, forming the product AcCoA
Ajs_0055	COG0583	DNA-binding transcription factor activity
Ajs_0058	COG1804	L-carnitine dehydratase bile acid-inducible protein F
Ajs_0059	COG1012	belongs to the aldehyde dehydrogenase family
Ajs_0059	COG2030	dehydratase
Ajs_0061	COG1960	acyl-CoA dehydrogenase activity
Ajs_0062	COG1960	acyl-CoA dehydrogenase activity
Ajs_0064	COG1183	phosphatidylcholine synthase activity
Ajs_0065	COG0850	regulation of cytokinetic process
Ajs_0067	COG0851	Prevents the cell division inhibition by proteins MinC and MinD at internal division sites while permitting inhibition at polar sites. This ensures cell division at the proper site by restricting the formation of a division septum at the midpoint of the long axis of the cell
Ajs_0068	COG1853	conserved protein domain typically associated with flavoprotein oxygenases, DIM6 NTAB family
Ajs_0070	COG0683	leucine binding
Ajs_0071	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
Ajs_0072	COG0583	DNA-binding transcription factor activity
Ajs_0078	COG1274	phosphoenolpyruvate carboxykinase (GTP) activity
Ajs_0080	COG1171	Catalyzes the anaerobic formation of alpha-ketobutyrate and ammonia from threonine in a two-step reaction. The first step involved a dehydration of threonine and a production of enamine intermediates (aminocrotonate), which tautomerizes to its imine form (iminobutyrate). Both intermediates are unstable and short- lived. The second step is the nonenzymatic hydrolysis of the enamine imine intermediates to form 2-ketobutyrate and free ammonia. In the low water environment of the cell, the second step is accelerated by RidA
Ajs_0081	COG1960	acyl-CoA dehydrogenase activity
Ajs_0084	COG0514	ATP-dependent DNA helicase (RecQ)
Ajs_0092	COG3256	nitric oxide reductase
Ajs_0093	COG3604	Transcriptional regulator
Ajs_0095	COG1760	l-serine dehydratase
Ajs_0097	COG3181	Tripartite tricarboxylate transporter family receptor
Ajs_0098	COG0318	PFAM AMP-dependent synthetase and ligase
Ajs_0109	COG1028	Short-chain dehydrogenase reductase Sdr
Ajs_0110	COG1024	Enoyl-CoA hydratase
Ajs_0118	COG1960	acyl-CoA dehydrogenase activity
Ajs_0119	COG3777	bacterial-type RNA polymerase transcription factor activity, metal ion regulated sequence-specific DNA binding
Ajs_0120	COG1028	Short-chain dehydrogenase reductase Sdr
Ajs_0121	COG2030	dehydratase
Ajs_0122	COG1024	Enoyl-CoA hydratase
Ajs_0123	COG0427	acetyl-CoA hydrolase
Ajs_0124	COG0183	Belongs to the thiolase family
Ajs_0126	COG0318	PFAM AMP-dependent synthetase and ligase
Ajs_0130	COG1960	acyl-CoA dehydrogenase activity
Ajs_0133	COG1804	L-carnitine dehydratase bile acid-inducible protein F
Ajs_0135	COG0334	Belongs to the Glu Leu Phe Val dehydrogenases family
Ajs_0136	COG2326	polyphosphate kinase activity
Ajs_0137	COG0583	DNA-binding transcription factor activity
Ajs_0139	COG0583	DNA-binding transcription factor activity
Ajs_0145	COG0723	plastoquinol--plastocyanin reductase activity
Ajs_0146	COG2204	response regulator
Ajs_0148	COG2989	Protein conserved in bacteria
Ajs_0149	COG3108	Peptidase M15
Ajs_0150	COG0703	Catalyzes the specific phosphorylation of the 3-hydroxyl group of shikimic acid using ATP as a cosubstrate
Ajs_0154	COG0683	leucine binding
Ajs_0156	COG0411	ABC transporter
Ajs_0158	COG0583	DNA-binding transcription factor activity
Ajs_0159	COG1028	Short-chain dehydrogenase reductase Sdr
Ajs_0160	COG0840	transmembrane signaling receptor activity
Ajs_0163	COG0347	Belongs to the P(II) protein family
Ajs_0164	COG0004	ammonium transporteR
Ajs_0166	COG0277	FAD linked oxidase domain protein
Ajs_0168	COG0247	lactate metabolic process
Ajs_0173	COG0386	Belongs to the glutathione peroxidase family
Ajs_0175	COG0477	Major facilitator Superfamily
Ajs_0176	COG0787	Catalyzes the interconversion of L-alanine and D- alanine. May also act on other amino acids
Ajs_0178	COG0625	glutathione transferase activity
Ajs_0186	COG1442	glycosyl transferase family 8
Ajs_0186	COG1216	Glycosyl transferase, family 2
Ajs_0190	COG0477	Major facilitator Superfamily
Ajs_0191	COG2258	MOSC domain
Ajs_0193	COG2205	protein histidine kinase activity
Ajs_0194	COG0745	RESPONSE REGULATOR receiver
Ajs_0196	COG3645	SOS response
Ajs_0203	COG0501	Belongs to the peptidase M48B family
Ajs_0204	COG1802	Transcriptional regulator
Ajs_0223	COG4569	acetaldehyde dehydrogenase (acetylating) activity
Ajs_0224	COG0119	Catalyzes the condensation of the acetyl group of acetyl-CoA with 3-methyl-2-oxobutanoate (2-oxoisovalerate) to form 3-carboxy-3-hydroxy-4-methylpentanoate (2-isopropylmalate)
Ajs_0228	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
Ajs_0230	COG1960	acyl-CoA dehydrogenase activity
Ajs_0233	COG0708	Exodeoxyribonuclease III
Ajs_0234	COG0461	Catalyzes the transfer of a ribosyl phosphate group from 5-phosphoribose 1-diphosphate to orotate, leading to the formation of orotidine monophosphate (OMP)
Ajs_0236	COG0064	Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp- tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA(Gln)
Ajs_0237	COG0154	amidase activity
Ajs_0238	COG0721	Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp- tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA(Gln)
Ajs_0239	COG1077	Cell shape determining protein MreB Mrl
Ajs_0241	COG2891	Involved in formation of the rod shape of the cell. May also contribute to regulation of formation of penicillin-binding proteins
Ajs_0242	COG0768	penicillin binding
Ajs_0244	COG1126	abc transporter atp-binding protein
Ajs_0245	COG0765	amino acid transport
Ajs_0246	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
Ajs_0250	COG0767	ABC-type transport system involved in resistance to organic solvents, permease component
Ajs_0251	COG1127	ABC transporter
Ajs_0254	COG3237	CsbD-like
Ajs_0257	COG2203	Gaf domain
Ajs_0257	COG4251	negative regulation of phosphorylation
Ajs_0257	COG5001	Diguanylate cyclase
Ajs_0257	COG3706	GGDEF domain
Ajs_0258	COG2095	MarC family integral membrane protein
Ajs_0259	COG1028	Short-chain dehydrogenase reductase Sdr
Ajs_0260	COG0412	Dienelactone hydrolase
Ajs_0262	COG1566	PFAM secretion protein HlyD family protein
Ajs_0263	COG1538	Outer membrane efflux protein
Ajs_0264	COG1846	Transcriptional regulator
Ajs_0265	COG0598	Magnesium transport protein CorA
Ajs_0271	COG2945	thiolester hydrolase activity
Ajs_0272	COG1686	Belongs to the peptidase S11 family
Ajs_0273	COG0048	Interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone. Located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side and probably holding the rRNA structure together. The combined cluster of proteins S8, S12 and S17 appears to hold together the shoulder and platform of the 30S subunit
Ajs_0274	COG0049	tRNA binding
Ajs_0275	COG0480	Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post- translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome
Ajs_0276	COG0050	This protein promotes the GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis
Ajs_0277	COG0051	transcription antitermination factor activity, RNA binding
Ajs_0278	COG0087	One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit
Ajs_0279	COG0088	Forms part of the polypeptide exit tunnel
Ajs_0280	COG0089	rRNA binding
Ajs_0281	COG0090	One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity
Ajs_0282	COG0185	Protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA
Ajs_0283	COG0091	The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome
Ajs_0284	COG0092	Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation
Ajs_0285	COG0197	Binds 23S rRNA and is also seen to make contacts with the A and possibly P site tRNAs
Ajs_0286	COG0255	Belongs to the universal ribosomal protein uL29 family
Ajs_0287	COG0186	One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA
Ajs_0288	COG0678	peroxiredoxin activity
Ajs_0292	COG0526	COG0526, thiol-disulfide isomerase and thioredoxins
Ajs_0296	COG1925	phosphoenolpyruvate-dependent sugar phosphotransferase system
Ajs_0297	COG1080	General (non sugar-specific) component of the phosphoenolpyruvate-dependent sugar phosphotransferase system (sugar PTS). This major carbohydrate active-transport system catalyzes the phosphorylation of incoming sugar substrates concomitantly with their translocation across the cell membrane. Enzyme I transfers the phosphoryl group from phosphoenolpyruvate (PEP) to the phosphoryl carrier protein (HPr)
Ajs_0298	COG0320	Catalyzes the radical-mediated insertion of two sulfur atoms into the C-6 and C-8 positions of the octanoyl moiety bound to the lipoyl domains of lipoate-dependent enzymes, thereby converting the octanoylated domains into lipoylated derivatives
Ajs_0299	COG0321	lipoyl(octanoyl) transferase activity
Ajs_0300	COG2921	Belongs to the UPF0250 family
Ajs_0302	COG0356	it plays a direct role in the translocation of protons across the membrane
Ajs_0304	COG0711	Component of the F(0) channel, it forms part of the peripheral stalk, linking F(1) to F(0)
Ajs_0305	COG0712	F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation
Ajs_0306	COG0056	Produces ATP from ADP in the presence of a proton gradient across the membrane. The alpha chain is a regulatory subunit
Ajs_0307	COG0224	Produces ATP from ADP in the presence of a proton gradient across the membrane. The gamma chain is believed to be important in regulating ATPase activity and the flow of protons through the CF(0) complex
Ajs_0308	COG0055	Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits
Ajs_0309	COG0355	proton-transporting ATP synthase activity, rotational mechanism
Ajs_0311	COG1793	dna ligase
Ajs_0312	COG1201	RNA secondary structure unwinding
Ajs_0320	COG3245	cytochrome
Ajs_0321	COG1538	Outer membrane efflux protein
Ajs_0323	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
Ajs_0330	COG0637	HAD-superfamily hydrolase subfamily IA, variant 3
Ajs_0333	COG1063	alcohol dehydrogenase
Ajs_0335	COG0121	glutamine amidotransferase
Ajs_0336	COG1942	4-Oxalocrotonate Tautomerase
Ajs_0338	COG2225	Involved in the glycolate utilization. Catalyzes the condensation and subsequent hydrolysis of acetyl-coenzyme A (acetyl-CoA) and glyoxylate to form malate and CoA
Ajs_0343	COG0018	arginyl-trna synthetase
Ajs_0345	COG1651	Required for disulfide bond formation in some periplasmic proteins. Acts by transferring its disulfide bond to other proteins and is reduced in the process
Ajs_0347	COG1137	ATPase activity
Ajs_0348	COG1508	bacterial-type RNA polymerase transcriptional activator activity, sequence-specific DNA binding
Ajs_0353	COG3012	SEC-C Motif Domain Protein
Ajs_0353	COG3318	Belongs to the UPF0149 family
Ajs_0354	COG1058	Belongs to the CinA family
Ajs_0354	COG1546	Belongs to the CinA family
Ajs_0355	COG1267	Lipid phosphatase which dephosphorylates phosphatidylglycerophosphate (PGP) to phosphatidylglycerol (PG)
Ajs_0357	COG2170	ATP-dependent carboxylate-amine ligase which exhibits weak glutamate--cysteine ligase activity
Ajs_0360	COG2967	ApaG domain
Ajs_0361	COG0036	Belongs to the ribulose-phosphate 3-epimerase family
Ajs_0363	COG0546	phosphoglycolate phosphatase activity
Ajs_0364	COG0840	transmembrane signaling receptor activity
Ajs_0369	COG0547	Catalyzes the transfer of the phosphoribosyl group of 5- phosphorylribose-1-pyrophosphate (PRPP) to anthranilate to yield N-(5'-phosphoribosyl)-anthranilate (PRA)
Ajs_0370	COG0134	indole-3-glycerol-phosphate synthase activity
Ajs_0371	COG3706	GGDEF domain
Ajs_0372	COG0692	Excises uracil residues from the DNA which can arise as a result of misincorporation of dUMP residues by DNA polymerase or due to deamination of cytosine
Ajs_0374	COG0809	Transfers and isomerizes the ribose moiety from AdoMet to the 7-aminomethyl group of 7-deazaguanine (preQ1-tRNA) to give epoxyqueuosine (oQ-tRNA)
Ajs_0376	COG1200	Critical role in recombination and DNA repair. Helps process Holliday junction intermediates to mature products by catalyzing branch migration. Has a DNA unwinding activity characteristic of a DNA helicase with a 3'- to 5'- polarity. Unwinds branched duplex DNA (Y-DNA)
Ajs_0378	COG0783	Belongs to the Dps family
Ajs_0380	COG0382	Catalyzes the prenylation of para-hydroxybenzoate (PHB) with an all-trans polyprenyl group. Mediates the second step in the final reaction sequence of ubiquinone-8 (UQ-8) biosynthesis, which is the condensation of the polyisoprenoid side chain with PHB, generating the first membrane-bound Q intermediate 3- octaprenyl-4-hydroxybenzoate
Ajs_0382	COG0554	Key enzyme in the regulation of glycerol uptake and metabolism. Catalyzes the phosphorylation of glycerol to yield sn- glycerol 3-phosphate
Ajs_0384	COG3842	ATPase activity
Ajs_0385	COG3842	ATPase activity
Ajs_0387	COG0395	ABC-type sugar transport system, permease component
Ajs_0390	COG0578	Belongs to the FAD-dependent glycerol-3-phosphate dehydrogenase family
Ajs_0391	COG0093	Binds to 23S rRNA. Forms part of two intersubunit bridges in the 70S ribosome
Ajs_0392	COG0198	One of the proteins that surrounds the polypeptide exit tunnel on the outside of the subunit
Ajs_0393	COG0094	This is 1 of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. In the 70S ribosome it contacts protein S13 of the 30S subunit (bridge B1b), connecting the 2 subunits
Ajs_0394	COG0199	Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site
Ajs_0395	COG0096	One of the primary rRNA binding proteins, it binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit
Ajs_0396	COG0097	This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7 L12 stalk, and near the tRNA binding site of the peptidyltransferase center
Ajs_0397	COG0256	This is one of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance
Ajs_0398	COG0098	Located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body
Ajs_0399	COG1841	ribosomal large subunit assembly
Ajs_0400	COG0200	Binds to the 23S rRNA
Ajs_0401	COG0201	protein transport
Ajs_0402	COG0257	Belongs to the bacterial ribosomal protein bL36 family
Ajs_0403	COG0099	Located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA. In the 70S ribosome it contacts the 23S rRNA (bridge B1a) and protein L5 of the 50S subunit (bridge B1b), connecting the 2 subunits
Ajs_0404	COG0100	Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine-Dalgarno cleft in the 70S ribosome
Ajs_0405	COG0522	One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit
Ajs_0406	COG0202	RNA polymerase activity
Ajs_0407	COG0203	ribosomal protein L17
Ajs_0410	COG1807	4-amino-4-deoxy-L-arabinose transferase and related glycosyltransferases of PMT family
Ajs_0411	COG0463	Glycosyl transferase, family 2
Ajs_0414	COG0792	nuclease activity
Ajs_0415	COG0279	D-glycero-D-manno-heptose 7-phosphate biosynthetic process
Ajs_0416	COG2823	Periplasmic or secreted lipoprotein
Ajs_0417	COG2084	Dehydrogenase
Ajs_0419	COG0664	- Catabolite gene activator and regulatory subunit of cAMP-dependent protein
Ajs_0423	COG2733	membrane
Ajs_0425	COG0277	FAD linked oxidase domain protein
Ajs_0431	COG0209	Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides
Ajs_0432	COG3850	Histidine kinase
Ajs_0433	COG2197	response regulator
Ajs_0435	COG2223	nitrite transmembrane transporter activity
Ajs_0436	COG5013	Belongs to the prokaryotic molybdopterin-containing oxidoreductase family
Ajs_0437	COG1140	nitrate reductase beta subunit
Ajs_0438	COG2180	nitrate reductase molybdenum cofactor assembly chaperone
Ajs_0439	COG2181	nitrate reductase activity
Ajs_0445	COG3945	hemerythrin HHE cation binding domain
Ajs_0451	COG0243	molybdopterin cofactor binding
Ajs_0453	COG1473	amidohydrolase
Ajs_0457	COG2818	Glycosylase
Ajs_0460	COG2230	cyclopropane-fatty-acyl-phospholipid synthase
Ajs_0468	COG0559	Belongs to the binding-protein-dependent transport system permease family
Ajs_0469	COG0411	ABC transporter
Ajs_0470	COG1022	Amp-dependent synthetase and ligase
Ajs_0471	COG3409	Peptidoglycan-binding domain 1 protein
Ajs_0471	COG3267	Type II secretory pathway component ExeA
Ajs_0473	COG0664	- Catabolite gene activator and regulatory subunit of cAMP-dependent protein
Ajs_0474	COG1187	pseudouridine synthase activity
Ajs_0475	COG0326	Molecular chaperone. Has ATPase activity
Ajs_0476	COG3181	Tripartite tricarboxylate transporter family receptor
Ajs_0482	COG1764	response to oxidative stress
Ajs_0483	COG1846	Transcriptional regulator
Ajs_0494	COG0037	tRNA processing
Ajs_0501	COG0380	Probably involved in the osmoprotection via the biosynthesis of trehalose. Catalyzes the transfer of glucose from UDP-glucose (UDP-Glc) to D-glucose 6-phosphate (Glc-6-P) to form trehalose-6-phosphate. Acts with retention of the anomeric configuration of the UDP-sugar donor
Ajs_0502	COG3387	PFAM Glycoside hydrolase 15-related
Ajs_0503	COG1877	trehalose-phosphatase activity
Ajs_0505	COG0617	tRNA 3'-terminal CCA addition
Ajs_0507	COG0625	glutathione transferase activity
Ajs_0508	COG0212	Belongs to the 5-formyltetrahydrofolate cyclo-ligase family
Ajs_0512	COG3128	pkhd-type hydroxylase
Ajs_0514	COG4774	siderophore transport
Ajs_0515	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
Ajs_0516	COG0318	PFAM AMP-dependent synthetase and ligase
Ajs_0518	COG3186	Phenylalanine-4-hydroxylase
Ajs_0521	COG1522	sequence-specific DNA binding
Ajs_0524	COG0815	Transfers the fatty acyl group on membrane lipoproteins
Ajs_0525	COG0764	3-hydroxyoctanoyl-[acyl-carrier-protein] dehydratase activity
Ajs_0527	COG0752	glycyl-tRNA synthetase alpha subunit
Ajs_0528	COG0751	glycine-tRNA ligase activity
Ajs_0529	COG0241	D,D-heptose 1,7-bisphosphate phosphatase
Ajs_0530	COG0204	Acyl-transferase
Ajs_0533	COG1652	LysM domain
Ajs_0534	COG1521	Catalyzes the phosphorylation of pantothenate (Pan), the first step in CoA biosynthesis
Ajs_0554	COG0784	Response regulator, receiver
Ajs_0554	COG5002	protein histidine kinase activity
Ajs_0556	COG1215	transferase activity, transferring glycosyl groups
Ajs_0572	COG4372	Transposase
Ajs_0578	COG0438	transferase activity, transferring glycosyl groups
Ajs_0587	COG0472	First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan
Ajs_0588	COG0548	Belongs to the acetylglutamate kinase family. ArgB subfamily
Ajs_0589	COG1309	transcriptional regulator
Ajs_0590	COG3039	Transposase
Ajs_0592	COG1960	acyl-CoA dehydrogenase activity
Ajs_0594	COG1250	3-hydroxyacyl-CoA dehydrogenase
Ajs_0594	COG1024	Enoyl-CoA hydratase
Ajs_0595	COG0183	Belongs to the thiolase family
Ajs_0598	COG1024	Enoyl-CoA hydratase
Ajs_0599	COG2050	protein possibly involved in aromatic compounds catabolism
Ajs_0601	COG1607	acyl-coa hydrolase
Ajs_0602	COG5265	(ABC) transporter
Ajs_0604	COG1638	TRAP-type C4-dicarboxylate transport system periplasmic component
Ajs_0606	COG3090	Trap-type c4-dicarboxylate transport system, small permease component
Ajs_0607	COG0583	DNA-binding transcription factor activity
Ajs_0609	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
Ajs_0610	COG0765	amino acid transport
Ajs_0611	COG0765	amino acid transport
Ajs_0612	COG1126	abc transporter atp-binding protein
Ajs_0613	COG2423	ornithine cyclodeaminase activity
Ajs_0614	COG1522	sequence-specific DNA binding
Ajs_0615	COG2010	Cytochrome c
Ajs_0617	COG4108	Increases the formation of ribosomal termination complexes and stimulates activities of RF-1 and RF-2. It binds guanine nucleotides and has strong preference for UGA stop codons. It may interact directly with the ribosome. The stimulation of RF- 1 and RF-2 is significantly reduced by GTP and GDP, but not by GMP
Ajs_0618	COG0499	May play a key role in the regulation of the intracellular concentration of adenosylhomocysteine
Ajs_0620	COG0685	methylenetetrahydrofolate reductase (NAD(P)H) activity
Ajs_0622	COG0797	Lytic transglycosylase with a strong preference for naked glycan strands that lack stem peptides
Ajs_0623	COG2961	Specifically methylates the adenine in position 2030 of 23S rRNA
Ajs_0625	COG0102	This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly
Ajs_0626	COG0103	maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
Ajs_0629	COG0316	Belongs to the HesB IscA family
Ajs_0630	COG2377	Catalyzes the specific phosphorylation of 1,6-anhydro-N- acetylmuramic acid (anhMurNAc) with the simultaneous cleavage of the 1,6-anhydro ring, generating MurNAc-6-P. Is required for the utilization of anhMurNAc either imported from the medium or derived from its own cell wall murein, and thus plays a role in cell wall recycling
Ajs_0634	COG0583	DNA-binding transcription factor activity
Ajs_0636	COG1207	Catalyzes the last two sequential reactions in the de novo biosynthetic pathway for UDP-N-acetylglucosamine (UDP- GlcNAc). The C-terminal domain catalyzes the transfer of acetyl group from acetyl coenzyme A to glucosamine-1-phosphate (GlcN-1-P) to produce N-acetylglucosamine-1-phosphate (GlcNAc-1-P), which is converted into UDP-GlcNAc by the transfer of uridine 5- monophosphate (from uridine 5-triphosphate), a reaction catalyzed by the N-terminal domain
Ajs_0637	COG4251	negative regulation of phosphorylation
Ajs_0640	COG1522	sequence-specific DNA binding
Ajs_0641	COG0449	glutamine-fructose-6-phosphate transaminase (isomerizing) activity
Ajs_0645	COG1064	alcohol dehydrogenase
Ajs_0646	COG0361	One of the essential components for the initiation of protein synthesis. Stabilizes the binding of IF-2 and IF-3 on the 30S subunit to which N-formylmethionyl-tRNA(fMet) subsequently binds. Helps modulate mRNA selection, yielding the 30S pre- initiation complex (PIC). Upon addition of the 50S ribosomal subunit IF-1, IF-2 and IF-3 are released leaving the mature 70S translation initation complex
Ajs_0647	COG5002	protein histidine kinase activity
Ajs_0647	COG2198	Histidine kinase
Ajs_0647	COG0784	Response regulator, receiver
Ajs_0648	COG1352	Methylation of the membrane-bound methyl-accepting chemotaxis proteins (MCP) to form gamma-glutamyl methyl ester residues in MCP
Ajs_0650	COG2205	protein histidine kinase activity
Ajs_0651	COG0745	RESPONSE REGULATOR receiver
Ajs_0653	COG0318	PFAM AMP-dependent synthetase and ligase
Ajs_0654	COG1651	Required for disulfide bond formation in some periplasmic proteins. Acts by transferring its disulfide bond to other proteins and is reduced in the process
Ajs_0655	COG3045	CreA protein
Ajs_0657	COG0769	Catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanyl-D-glutamate (UMAG) in the biosynthesis of bacterial cell-wall peptidoglycan
Ajs_0657	COG0189	ligase activity
Ajs_0658	COG1132	(ABC) transporter
Ajs_0664	COG2141	COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases
Ajs_0678	COG0368	Joins adenosylcobinamide-GDP and alpha-ribazole to generate adenosylcobalamin (Ado-cobalamin). Also synthesizes adenosylcobalamin 5'-phosphate from adenosylcobinamide-GDP and alpha-ribazole 5'-phosphate
Ajs_0679	COG1171	Catalyzes the anaerobic formation of alpha-ketobutyrate and ammonia from threonine in a two-step reaction. The first step involved a dehydration of threonine and a production of enamine intermediates (aminocrotonate), which tautomerizes to its imine form (iminobutyrate). Both intermediates are unstable and short- lived. The second step is the nonenzymatic hydrolysis of the enamine imine intermediates to form 2-ketobutyrate and free ammonia. In the low water environment of the cell, the second step is accelerated by RidA
Ajs_0680	COG1765	OsmC-like protein
Ajs_0681	COG2941	Oxygenase that introduces the hydroxyl group at carbon five of 2-nonaprenyl-3-methyl-6-methoxy-1,4-benzoquinol resulting in the formation of 2-nonaprenyl-3-methyl-5-hydroxy-6-methoxy-1,4- benzoquinol
Ajs_0685	COG4166	transmembrane transport
Ajs_0687	COG1473	amidohydrolase
Ajs_0689	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
Ajs_0690	COG0444	Belongs to the ABC transporter superfamily
Ajs_0691	COG4608	Belongs to the ABC transporter superfamily
Ajs_0692	COG0737	Belongs to the 5'-nucleotidase family
Ajs_0693	COG1881	PFAM PEBP family protein
Ajs_0695	COG0364	Catalyzes the oxidation of glucose 6-phosphate to 6- phosphogluconolactone
Ajs_0696	COG0176	Transaldolase is important for the balance of metabolites in the pentose-phosphate pathway
Ajs_0697	COG0166	Belongs to the GPI family
Ajs_0698	COG3706	GGDEF domain
Ajs_0699	COG0459	protein refolding
Ajs_0700	COG0234	Binds to Cpn60 in the presence of Mg-ATP and suppresses the ATPase activity of the latter
Ajs_0701	COG1056	cytidyltransferase-related domain
Ajs_0701	COG1051	belongs to the nudix hydrolase family
Ajs_0705	COG0192	Catalyzes the formation of S-adenosylmethionine (AdoMet) from methionine and ATP. The overall synthetic reaction is composed of two sequential steps, AdoMet formation and the subsequent tripolyphosphate hydrolysis which occurs prior to release of AdoMet from the enzyme
Ajs_0707	COG1560	Kdo2-lipid A biosynthetic process
Ajs_0709	COG0218	Necessary for normal cell division and for the maintenance of normal septation
Ajs_0711	COG1333	cytochrome c biogenesis protein
Ajs_0712	COG0755	Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes
Ajs_0713	COG2041	Part of the MsrPQ system that repairs oxidized periplasmic proteins containing methionine sulfoxide residues (Met-O), using respiratory chain electrons. Thus protects these proteins from oxidative-stress damage caused by reactive species of oxygen and chlorine generated by the host defense mechanisms. MsrPQ is essential for the maintenance of envelope integrity under bleach stress, rescuing a wide series of structurally unrelated periplasmic proteins from methionine oxidation. The catalytic subunit MsrP is non-stereospecific, being able to reduce both (R-) and (S-) diastereoisomers of methionine sulfoxide
Ajs_0714	COG2717	Part of the MsrPQ system that repairs oxidized periplasmic proteins containing methionine sulfoxide residues (Met-O), using respiratory chain electrons. Thus protects these proteins from oxidative-stress damage caused by reactive species of oxygen and chlorine generated by the host defense mechanisms. MsrPQ is essential for the maintenance of envelope integrity under bleach stress, rescuing a wide series of structurally unrelated periplasmic proteins from methionine oxidation. MsrQ provides electrons for reduction to the reductase catalytic subunit MsrP, using the quinone pool of the respiratory chain
Ajs_0718	COG1961	COG1961 Site-specific recombinases, DNA invertase Pin homologs
Ajs_0728	COG1965	Belongs to the frataxin family
Ajs_0736	COG0232	Belongs to the dGTPase family. Type 2 subfamily
Ajs_0741	COG0070	glutamate synthase
Ajs_0741	COG0067	glutamate synthase
Ajs_0741	COG0069	glutamate synthase activity
Ajs_0744	COG0765	amino acid transport
Ajs_0746	COG0421	Catalyzes the irreversible transfer of a propylamine group from the amino donor S-adenosylmethioninamine (decarboxy- AdoMet) to putrescine (1,4-diaminobutane) to yield spermidine
Ajs_0747	COG1586	Catalyzes the decarboxylation of S-adenosylmethionine to S-adenosylmethioninamine (dcAdoMet), the propylamine donor required for the synthesis of the polyamines spermine and spermidine from the diamine putrescine
Ajs_0748	COG1127	ABC transporter
Ajs_0749	COG0767	ABC-type transport system involved in resistance to organic solvents, permease component
Ajs_0750	COG1463	ABC-type transport system involved in resistance to organic solvents, periplasmic component
Ajs_0755	COG1131	(ABC) transporter
Ajs_0756	COG0842	Transport permease protein
Ajs_0757	COG5007	Belongs to the BolA IbaG family
Ajs_0758	COG0766	Cell wall formation. Adds enolpyruvyl to UDP-N- acetylglucosamine
Ajs_0759	COG0040	Catalyzes the condensation of ATP and 5-phosphoribose 1- diphosphate to form N'-(5'-phosphoribosyl)-ATP (PR-ATP). Has a crucial role in the pathway because the rate of histidine biosynthesis seems to be controlled primarily by regulation of hisG enzymatic activity
Ajs_0762	COG0079	Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily
Ajs_0763	COG0131	Imidazoleglycerol-phosphate dehydratase
Ajs_0765	COG0106	1-(5-phosphoribosyl)-5- 5-phosphoribosylamino)methylideneamino imidazole-4-carboxamide isomerase
Ajs_0768	COG0438	transferase activity, transferring glycosyl groups
Ajs_0774	COG1087	Belongs to the NAD(P)-dependent epimerase dehydratase family
Ajs_0775	COG0107	imidazoleglycerol-phosphate synthase activity
Ajs_0776	COG0139	Catalyzes the hydrolysis of the adenine ring of phosphoribosyl-AMP
Ajs_0777	COG0140	phosphoribosyl-ATP diphosphatase activity
Ajs_0780	COG0537	adenosine 5'-monophosphoramidase activity
Ajs_0781	COG1826	Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin-arginine motif in their signal peptide across membranes
Ajs_0782	COG1826	Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin-arginine motif in their signal peptide across membranes
Ajs_0783	COG0805	protein transport
Ajs_0784	COG0265	Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain
Ajs_0786	COG0327	Belongs to the GTP cyclohydrolase I type 2 NIF3 family
Ajs_0787	COG1995	Catalyzes the NAD(P)-dependent oxidation of 4- (phosphohydroxy)-L-threonine (HTP) into 2-amino-3-oxo-4- (phosphohydroxy)butyric acid which spontaneously decarboxylates to form 3-amino-2-oxopropyl phosphate (AHAP)
Ajs_0788	COG1970	mechanosensitive ion channel activity
Ajs_0789	COG0723	plastoquinol--plastocyanin reductase activity
Ajs_0790	COG1290	Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis
Ajs_0791	COG2857	Cytochrome c1
Ajs_0792	COG0625	glutathione transferase activity
Ajs_0793	COG2969	positive regulation of protein catabolic process
Ajs_0795	COG0739	heme binding
Ajs_0796	COG0653	protein targeting
Ajs_0799	COG0494	nUDIX hydrolase
Ajs_0800	COG3024	Inhibits all the catalytic activities of DNA gyrase by preventing its interaction with DNA. Acts by binding directly to the C-terminal domain of GyrB, which probably disrupts DNA binding by the gyrase
Ajs_0801	COG4582	Cell division factor that enhances FtsZ-ring assembly. Directly interacts with FtsZ and promotes bundling of FtsZ protofilaments, with a reduction in FtsZ GTPase activity
Ajs_0802	COG0237	dephospho-CoA kinase activity
Ajs_0817	COG0846	NAD-dependent lysine deacetylase and desuccinylase that specifically removes acetyl and succinyl groups on target proteins. Modulates the activities of several proteins which are inactive in their acylated form
Ajs_0823	COG2129	metallophosphoesterase
Ajs_0832	COG0553	Transcription regulator that activates transcription by stimulating RNA polymerase (RNAP) recycling in case of stress conditions such as supercoiled DNA or high salt concentrations. Probably acts by releasing the RNAP, when it is trapped or immobilized on tightly supercoiled DNA. Does not activate transcription on linear DNA. Probably not involved in DNA repair
Ajs_0833	COG1205	dead DEAH box helicase
Ajs_0833	COG1111	helicase
Ajs_0836	COG4584	PFAM Integrase catalytic
Ajs_0840	COG0142	geranyltranstransferase activity
Ajs_0841	COG0261	This protein binds to 23S rRNA in the presence of protein L20
Ajs_0842	COG0211	Belongs to the bacterial ribosomal protein bL27 family
Ajs_0843	COG0536	An essential GTPase which binds GTP, GDP and possibly (p)ppGpp with moderate affinity, with high nucleotide exchange rates and a fairly low GTP hydrolysis rate. Plays a role in control of the cell cycle, stress response, ribosome biogenesis and in those bacteria that undergo differentiation, in morphogenesis control
Ajs_0844	COG0263	Catalyzes the transfer of a phosphate group to glutamate to form L-glutamate 5-phosphate
Ajs_0845	COG0494	nUDIX hydrolase
Ajs_0846	COG0442	prolyl-tRNA aminoacylation
Ajs_0847	COG0741	lytic transglycosylase activity
Ajs_0848	COG1253	flavin adenine dinucleotide binding
Ajs_0849	COG0278	Belongs to the glutaredoxin family. Monothiol subfamily
Ajs_0851	COG0216	Peptide chain release factor 1 directs the termination of translation in response to the peptide chain termination codons UAG and UAA
Ajs_0852	COG0373	Catalyzes the NADPH-dependent reduction of glutamyl- tRNA(Glu) to glutamate 1-semialdehyde (GSA)
Ajs_0854	COG0583	DNA-binding transcription factor activity
Ajs_0857	COG3264	Mechanosensitive ion channel
Ajs_0857	COG1511	domain protein
Ajs_0858	COG0584	glycerophosphoryl diester phosphodiesterase
Ajs_0860	COG0395	ABC-type sugar transport system, permease component
Ajs_0861	COG1175	transmembrane transport
Ajs_0862	COG1653	transport
Ajs_0863	COG0111	D-isomer specific 2-hydroxyacid dehydrogenase
Ajs_0867	COG2226	methyltransferase
Ajs_0870	COG0661	Is probably a protein kinase regulator of UbiI activity which is involved in aerobic coenzyme Q (ubiquinone) biosynthesis
Ajs_0874	COG0173	Aspartyl-tRNA synthetase with relaxed tRNA specificity since it is able to aspartylate not only its cognate tRNA(Asp) but also tRNA(Asn). Reaction proceeds in two steps L-aspartate is first activated by ATP to form Asp-AMP and then transferred to the acceptor end of tRNA(Asp Asn)
Ajs_0878	COG1502	Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol
Ajs_0879	COG0302	gtp cyclohydrolase
Ajs_0885	COG1280	lysine exporter protein (LysE YggA)
Ajs_0886	COG0154	amidase activity
Ajs_0888	COG4608	Belongs to the ABC transporter superfamily
Ajs_0889	COG0444	Belongs to the ABC transporter superfamily
Ajs_0890	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
Ajs_0892	COG1145	4fe-4S ferredoxin, iron-sulfur binding domain protein
Ajs_0893	COG0193	aminoacyl-tRNA hydrolase activity
Ajs_0894	COG1825	This is one of the proteins that binds to the 5S RNA in the ribosome where it forms part of the central protuberance
Ajs_0895	COG0462	Involved in the biosynthesis of the central metabolite phospho-alpha-D-ribosyl-1-pyrophosphate (PRPP) via the transfer of pyrophosphoryl group from ATP to 1-hydroxyl of ribose-5-phosphate (Rib-5-P)
Ajs_0896	COG1947	Catalyzes the phosphorylation of the position 2 hydroxy group of 4-diphosphocytidyl-2C-methyl-D-erythritol
Ajs_0899	COG0266	class I DNA-(apurinic or apyrimidinic site) endonuclease activity
Ajs_0902	COG1660	Displays ATPase and GTPase activities
Ajs_0903	COG0497	DNA recombination
Ajs_0904	COG0061	Involved in the regulation of the intracellular balance of NAD and NADP, and is a key enzyme in the biosynthesis of NADP. Catalyzes specifically the phosphorylation on 2'-hydroxyl of the adenosine moiety of NAD to yield NADP
Ajs_0905	COG1420	regulation of RNA biosynthetic process
Ajs_0914	COG3328	transposase activity
Ajs_0921	COG0635	Involved in the biosynthesis of porphyrin-containing compound
Ajs_0922	COG0127	Pyrophosphatase that catalyzes the hydrolysis of nucleoside triphosphates to their monophosphate derivatives, with a high preference for the non-canonical purine nucleotides XTP (xanthosine triphosphate), dITP (deoxyinosine triphosphate) and ITP. Seems to function as a house-cleaning enzyme that removes non-canonical purine nucleotides from the nucleotide pool, thus preventing their incorporation into DNA RNA and avoiding chromosomal lesions
Ajs_0926	COG1561	YicC-like family, N-terminal region
Ajs_0927	COG0582	viral genome integration into host DNA
Ajs_0931	COG0305	Participates in initiation and elongation during chromosome replication
Ajs_0932	COG1396	sequence-specific DNA binding
Ajs_0945	COG4737	Cytotoxic translational repressor of toxin-antitoxin stability system
Ajs_0947	COG0194	GDP metabolic process
Ajs_0948	COG1758	RNA polymerase activity
Ajs_0949	COG0317	In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance
Ajs_0952	COG0184	Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome
Ajs_0953	COG1185	polyribonucleotide nucleotidyltransferase activity
Ajs_0955	COG0149	triose-phosphate isomerase activity
Ajs_0957	COG0838	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient
Ajs_0958	COG0377	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient
Ajs_0959	COG0852	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient
Ajs_0960	COG0649	NAD binding
Ajs_0963	COG1034	ATP synthesis coupled electron transport
Ajs_0964	COG1005	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient. This subunit may bind ubiquinone
Ajs_0965	COG1143	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient
Ajs_0967	COG0713	ATP synthesis coupled electron transport
Ajs_0970	COG1007	ATP synthesis coupled electron transport
Ajs_0973	COG1132	(ABC) transporter
Ajs_0975	COG4133	protoheme IX ABC transporter activity
Ajs_0976	COG1280	lysine exporter protein (LysE YggA)
Ajs_0978	COG0323	This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. May act as a molecular matchmaker , a protein that promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex
Ajs_0980	COG0586	Pfam SNARE associated Golgi protein
Ajs_0983	COG0860	N-Acetylmuramoyl-L-alanine amidase
Ajs_0985	COG1600	Catalyzes the conversion of epoxyqueuosine (oQ) to queuosine (Q), which is a hypermodified base found in the wobble positions of tRNA(Asp), tRNA(Asn), tRNA(His) and tRNA(Tyr)
Ajs_0987	COG3181	Tripartite tricarboxylate transporter family receptor
Ajs_0988	COG4974	Belongs to the 'phage' integrase family
Ajs_0990	COG3434	signal transduction protein containing EAL and modified HD-GYP domains
Ajs_0991	COG3434	signal transduction protein containing EAL and modified HD-GYP domains
Ajs_0992	COG2833	Protein of unknown function (DUF455)
Ajs_0994	COG1281	Redox regulated molecular chaperone. Protects both thermally unfolding and oxidatively damaged proteins from irreversible aggregation. Plays an important role in the bacterial defense system toward oxidative stress
Ajs_0996	COG2919	Essential cell division protein. May link together the upstream cell division proteins, which are predominantly cytoplasmic, with the downstream cell division proteins, which are predominantly periplasmic
Ajs_0997	COG0148	phosphopyruvate hydratase activity
Ajs_0999	COG2877	3-deoxy-8-phosphooctulonate synthase activity
Ajs_1000	COG0504	CTP synthase activity
Ajs_1001	COG0452	Catalyzes two steps in the biosynthesis of coenzyme A. In the first step cysteine is conjugated to 4'-phosphopantothenate to form 4-phosphopantothenoylcysteine, in the latter compound is decarboxylated to form 4'-phosphopantotheine
Ajs_1002	COG0756	dUTP diphosphatase activity
Ajs_1004	COG1047	Peptidyl-prolyl cis-trans
Ajs_1005	COG2850	peptidyl-arginine hydroxylation
Ajs_1008	COG1235	May be involved in the transport of PQQ or its precursor to the periplasm
Ajs_1009	COG3317	Gram-negative-bacterium-type cell outer membrane assembly
Ajs_1010	COG0329	Catalyzes the condensation of (S)-aspartate-beta- semialdehyde (S)-ASA and pyruvate to 4-hydroxy- tetrahydrodipicolinate (HTPA)
Ajs_1013	COG2814	Major facilitator Superfamily
Ajs_1015	COG0741	lytic transglycosylase activity
Ajs_1017	COG0840	transmembrane signaling receptor activity
Ajs_1020	COG2308	Evidence 4 Homologs of previously reported genes of
Ajs_1023	COG4628	conserved protein (DUF2132)
Ajs_1027	COG4774	siderophore transport
Ajs_1036	COG1722	exodeoxyribonuclease VII activity
Ajs_1037	COG0142	geranyltranstransferase activity
Ajs_1038	COG1154	Catalyzes the acyloin condensation reaction between C atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D-xylulose-5-phosphate (DXP)
Ajs_1039	COG4663	Part of the tripartite ATP-independent periplasmic (TRAP) transport system
Ajs_1040	COG1593	TRAP-type C4-dicarboxylate transport system, large permease component
Ajs_1042	COG0405	Gamma-glutamyltransferase
Ajs_1047	COG1045	serine acetyltransferase
Ajs_1049	COG1063	alcohol dehydrogenase
Ajs_1051	COG0521	Mo-molybdopterin cofactor biosynthetic process
Ajs_1052	COG3028	Belongs to the UPF0307 family
Ajs_1053	COG0312	modulator of DNA gyrase
Ajs_1057	COG0114	fumarate hydratase activity
Ajs_1059	COG0745	RESPONSE REGULATOR receiver
Ajs_1060	COG2205	protein histidine kinase activity
Ajs_1061	COG2113	Glycine betaine
Ajs_1064	COG4176	ABC-type proline glycine betaine transport system permease component
Ajs_1065	COG4175	Glycine betaine
Ajs_1067	COG0365	Catalyzes the conversion of acetate into acetyl-CoA (AcCoA), an essential intermediate at the junction of anabolic and catabolic pathways. AcsA undergoes a two-step reaction. In the first half reaction, AcsA combines acetate with ATP to form acetyl-adenylate (AcAMP) intermediate. In the second half reaction, it can then transfer the acetyl group from AcAMP to the sulfhydryl group of CoA, forming the product AcCoA
Ajs_1069	COG4654	Cytochrome c, class I
Ajs_1071	COG0129	dihydroxy-acid dehydratase activity
Ajs_1072	COG0129	dihydroxy-acid dehydratase activity
Ajs_1075	COG0682	Transfers the N-acyl diglyceride group on what will become the N-terminal cysteine of membrane lipoproteins
Ajs_1076	COG1802	Transcriptional regulator
Ajs_1080	COG0318	PFAM AMP-dependent synthetase and ligase
Ajs_1084	COG3278	Belongs to the heme-copper respiratory oxidase family
Ajs_1091	COG0664	- Catabolite gene activator and regulatory subunit of cAMP-dependent protein
Ajs_1092	COG0635	Involved in the biosynthesis of porphyrin-containing compound
Ajs_1096	COG4206	TonB-dependent receptor
Ajs_1097	COG1797	cobyrinic acid a,c-diamide synthase activity
Ajs_1099	COG4607	ABC-type enterochelin transport system periplasmic component
Ajs_1100	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
Ajs_1101	COG1120	ATPase activity
Ajs_1102	COG2109	Required for both de novo synthesis of the corrin ring for the assimilation of exogenous corrinoids. Participates in the adenosylation of a variety of incomplete and complete corrinoids
Ajs_1107	COG3328	transposase activity
Ajs_1109	COG2814	Major facilitator Superfamily
Ajs_1112	COG0280	phosphate acetyltransferase
Ajs_1112	COG0281	malic enzyme
Ajs_1113	COG2233	PERMEase
Ajs_1118	COG2186	Transcriptional regulator
Ajs_1126	COG1012	belongs to the aldehyde dehydrogenase family
Ajs_1129	COG0402	S-adenosylhomocysteine deaminase activity
Ajs_1130	COG0717	Belongs to the dCTP deaminase family
Ajs_1131	COG2321	neutral zinc metallopeptidase
Ajs_1132	COG0513	Belongs to the DEAD box helicase family
Ajs_1135	COG1277	ABC-type transport system involved in multi-copper enzyme maturation permease component
Ajs_1138	COG0348	domain, Protein
Ajs_1138	COG3901	Regulator of nitric oxide reductase transcription
Ajs_1139	COG4263	nitrous-oxide reductase activity
Ajs_1141	COG3245	cytochrome
Ajs_1143	COG0639	Hydrolyzes diadenosine 5',5'''-P1,P4-tetraphosphate to yield ADP
Ajs_1144	COG2916	Histone family protein nucleoid-structuring protein H-NS
Ajs_1145	COG1048	Catalyzes the isomerization of citrate to isocitrate via cis-aconitate
Ajs_1148	COG3279	Response regulator of the LytR AlgR family
Ajs_1150	COG3275	phosphorelay sensor kinase activity
Ajs_1152	COG1968	undecaprenyl-diphosphatase activity
Ajs_1154	COG2267	carboxylic ester hydrolase activity
Ajs_1157	COG3540	Alkaline phosphatase
Ajs_1158	COG0745	RESPONSE REGULATOR receiver
Ajs_1158	COG3706	GGDEF domain
Ajs_1160	COG0496	Nucleotidase that shows phosphatase activity on nucleoside 5'-monophosphates
Ajs_1161	COG2518	Catalyzes the methyl esterification of L-isoaspartyl residues in peptides and proteins that result from spontaneous decomposition of normal L-aspartyl and L-asparaginyl residues. It plays a role in the repair and or degradation of damaged proteins
Ajs_1163	COG0564	pseudouridine synthase activity
Ajs_1164	COG1386	Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpA that pull DNA away from mid-cell into both cell halves
Ajs_1165	COG1187	pseudouridine synthase activity
Ajs_1166	COG0105	UTP biosynthetic process
Ajs_1167	COG0820	rRNA (adenine-C2-)-methyltransferase activity
Ajs_1170	COG0821	Converts 2C-methyl-D-erythritol 2,4-cyclodiphosphate (ME-2,4cPP) into 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate
Ajs_1171	COG0124	histidyl-tRNA synthetase
Ajs_1174	COG1160	GTP binding
Ajs_1175	COG1923	regulation of RNA biosynthetic process
Ajs_1176	COG2262	GTPase that associates with the 50S ribosomal subunit and may have a role during protein synthesis or ribosome biogenesis
Ajs_1177	COG0330	HflC and HflK could
Ajs_1178	COG0330	HflC and HflK could
Ajs_1180	COG3705	Required for the first step of histidine biosynthesis. May allow the feedback regulation of ATP phosphoribosyltransferase activity by histidine
Ajs_1181	COG0104	Plays an important role in the de novo pathway of purine nucleotide biosynthesis. Catalyzes the first committed step in the biosynthesis of AMP from IMP
Ajs_1183	COG1187	pseudouridine synthase activity
Ajs_1185	COG0726	polysaccharide deacetylase
Ajs_1191	COG3852	Histidine kinase
Ajs_1192	COG2204	response regulator
Ajs_1194	COG0708	Exodeoxyribonuclease III
Ajs_1197	COG0207	Catalyzes the reductive methylation of 2'-deoxyuridine- 5'-monophosphate (dUMP) to 2'-deoxythymidine-5'-monophosphate (dTMP) while utilizing 5,10-methylenetetrahydrofolate (mTHF) as the methyl donor and reductant in the reaction, yielding dihydrofolate (DHF) as a by-product. This enzymatic reaction provides an intracellular de novo source of dTMP, an essential precursor for DNA biosynthesis
Ajs_1198	COG0277	FAD linked oxidase domain protein
Ajs_1200	COG1295	ribonuclease BN
Ajs_1201	COG3349	Catalyzes the conversion of zeta-carotene to lycopene via the intermediary of neurosporene. It carries out two consecutive desaturations (introduction of double bonds) at positions C-7 and C-7'
Ajs_1202	COG1562	ergosterol biosynthetic process
Ajs_1207	COG0841	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
Ajs_1208	COG0544	peptidyl-prolyl cis-trans isomerase activity
Ajs_1209	COG0740	serine-type endopeptidase activity
Ajs_1210	COG1219	ATP-dependent specificity component of the Clp protease. It directs the protease to specific substrates. Can perform chaperone functions in the absence of ClpP
Ajs_1211	COG0466	ATP-dependent serine protease that mediates the selective degradation of mutant and abnormal proteins as well as certain short-lived regulatory proteins. Required for cellular homeostasis and for survival from DNA damage and developmental changes induced by stress. Degrades polypeptides processively to yield small peptide fragments that are 5 to 10 amino acids long. Binds to DNA in a double-stranded, site-specific manner
Ajs_1213	COG0582	viral genome integration into host DNA
Ajs_1216	COG1484	DNA-dependent DNA replication
Ajs_1232	COG3696	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
Ajs_1235	COG2132	Multicopper oxidase
Ajs_1236	COG0745	RESPONSE REGULATOR receiver
Ajs_1238	COG2826	transposase and inactivated derivatives, IS30 family
Ajs_1240	COG0672	)-iron permease
Ajs_1241	COG0789	Transcriptional regulator
Ajs_1254	COG2003	Belongs to the UPF0758 family
Ajs_1265	COG3311	Transcriptional regulator
Ajs_1266	COG1569	PIN domain
Ajs_1282	COG0798	PFAM Bile acid sodium symporter
Ajs_1283	COG1393	Belongs to the ArsC family
Ajs_1284	COG0431	NADPH-dependent FMN reductase
Ajs_1301	COG0789	Transcriptional regulator
Ajs_1309	COG0270	DNA (cytosine-5-)-methyltransferase activity
Ajs_1311	COG0550	Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supercoils. Finally, in the religation step, the DNA 3'-OH attacks the covalent intermediate to expel the active-site tyrosine and restore the DNA phosphodiester backbone
Ajs_1312	COG0629	single-stranded DNA binding
Ajs_1319	COG1192	Involved in chromosome partitioning
Ajs_1324	COG3609	addiction module antidote protein, CC2985 family
Ajs_1326	COG1742	UPF0060 membrane protein
Ajs_1336	COG0789	Transcriptional regulator
Ajs_1337	COG4974	Belongs to the 'phage' integrase family
Ajs_1340	COG0582	viral genome integration into host DNA
Ajs_1342	COG4584	PFAM Integrase catalytic
Ajs_1349	COG1396	sequence-specific DNA binding
Ajs_1350	COG0583	DNA-binding transcription factor activity
Ajs_1356	COG0526	COG0526, thiol-disulfide isomerase and thioredoxins
Ajs_1357	COG4232	protein-disulfide reductase activity
Ajs_1358	COG0745	RESPONSE REGULATOR receiver
Ajs_1360	COG0492	ferredoxin-NADP+ reductase activity
Ajs_1364	COG1651	Required for disulfide bond formation in some periplasmic proteins. Acts by transferring its disulfide bond to other proteins and is reduced in the process
Ajs_1365	COG2220	Zn-dependent hydrolases of the beta-lactamase fold
Ajs_1367	COG1275	C4-dicarboxylate transporter malic acid transport protein
Ajs_1370	COG1230	cation diffusion facilitator family transporter
Ajs_1371	COG0640	Transcriptional regulator
Ajs_1373	COG0789	Transcriptional regulator
Ajs_1374	COG2814	Major facilitator Superfamily
Ajs_1376	COG1168	Bifunctional PLP-dependent enzyme with beta-cystaTHIonase and maltose regulon repressor activities
Ajs_1382	COG0599	Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity
Ajs_1384	COG1028	Short-chain dehydrogenase reductase Sdr
Ajs_1385	COG0583	DNA-binding transcription factor activity
Ajs_1396	COG2003	Belongs to the UPF0758 family
Ajs_1444	COG0270	DNA (cytosine-5-)-methyltransferase activity
Ajs_1445	COG0550	Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supercoils. Finally, in the religation step, the DNA 3'-OH attacks the covalent intermediate to expel the active-site tyrosine and restore the DNA phosphodiester backbone
Ajs_1446	COG0629	single-stranded DNA binding
Ajs_1453	COG1192	Involved in chromosome partitioning
Ajs_1457	COG2963	transposase activity
Ajs_1459	COG3039	Transposase
Ajs_1460	COG2205	protein histidine kinase activity
Ajs_1467	COG2217	Heavy metal translocating P-type atpase
Ajs_1473	COG1742	UPF0060 membrane protein
Ajs_1474	COG0789	Transcriptional regulator
Ajs_1479	COG3174	membrane
Ajs_1483	COG3696	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
Ajs_1485	COG1677	Flagellar hook-basal body complex protein FliE
Ajs_1494	COG2230	cyclopropane-fatty-acyl-phospholipid synthase
Ajs_1495	COG0465	Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins
Ajs_1499	COG0661	Is probably a protein kinase regulator of UbiI activity which is involved in aerobic coenzyme Q (ubiquinone) biosynthesis
Ajs_1505	COG0265	Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain
Ajs_1507	COG0213	The enzymes which catalyze the reversible phosphorolysis of pyrimidine nucleosides are involved in the degradation of these compounds and in their utilization as carbon and energy sources, or in the rescue of pyrimidine bases for nucleotide synthesis
Ajs_1508	COG1236	Exonuclease of the beta-lactamase fold involved in RNA processing
Ajs_1510	COG1512	COG1512 Beta-propeller domains of methanol dehydrogenase type
Ajs_1513	COG2217	Heavy metal translocating P-type atpase
Ajs_1514	COG2326	polyphosphate kinase activity
Ajs_1523	COG4774	siderophore transport
Ajs_1537	COG1651	Required for disulfide bond formation in some periplasmic proteins. Acts by transferring its disulfide bond to other proteins and is reduced in the process
Ajs_1591	COG1475	DNA binding
Ajs_1607	COG1840	ABC-type Fe3 transport system, periplasmic component
Ajs_1608	COG0008	Catalyzes the attachment of glutamate to tRNA(Glu) in a two-step reaction glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu)
Ajs_1610	COG0757	Catalyzes a trans-dehydration via an enolate intermediate
Ajs_1613	COG3384	dioxygenase
Ajs_1616	COG1522	sequence-specific DNA binding
Ajs_1618	COG3228	Belongs to the MtfA family
Ajs_1619	COG2908	Hydrolyzes the pyrophosphate bond of UDP-2,3- diacylglucosamine to yield 2,3-diacylglucosamine 1-phosphate (lipid X) and UMP by catalyzing the attack of water at the alpha-P atom. Involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell
Ajs_1623	COG0215	cysteine-tRNA ligase activity
Ajs_1627	COG0037	tRNA processing
Ajs_1628	COG0527	aspartate kinase activity
Ajs_1630	COG0620	Catalyzes the transfer of a methyl group from 5- methyltetrahydrofolate to homocysteine resulting in methionine formation
Ajs_1631	COG0583	DNA-binding transcription factor activity
Ajs_1637	COG3800	Transcriptional regulator
Ajs_1637	COG1396	sequence-specific DNA binding
Ajs_1639	COG1188	Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit, (S4 paralog))
Ajs_1640	COG0642	Histidine kinase
Ajs_1642	COG3181	Tripartite tricarboxylate transporter family receptor
Ajs_1652	COG0276	Catalyzes the ferrous insertion into protoporphyrin IX
Ajs_1653	COG1011	Hydrolase
Ajs_1655	COG2267	carboxylic ester hydrolase activity
Ajs_1658	COG0082	Catalyzes the anti-1,4-elimination of the C-3 phosphate and the C-6 proR hydrogen from 5-enolpyruvylshikimate-3-phosphate (EPSP) to yield chorismate, which is the branch point compound that serves as the starting substrate for the three terminal pathways of aromatic amino acid biosynthesis. This reaction introduces a second double bond into the aromatic ring system
Ajs_1659	COG1327	Negatively regulates transcription of bacterial ribonucleotide reductase nrd genes and operons by binding to NrdR- boxes
Ajs_1660	COG0112	Catalyzes the reversible interconversion of serine and glycine with tetrahydrofolate (THF) serving as the one-carbon carrier. This reaction serves as the major source of one-carbon groups required for the biosynthesis of purines, thymidylate, methionine, and other important biomolecules. Also exhibits THF- independent aldolase activity toward beta-hydroxyamino acids, producing glycine and aldehydes, via a retro-aldol mechanism
Ajs_1661	COG0741	lytic transglycosylase activity
Ajs_1664	COG1959	2 iron, 2 sulfur cluster binding
Ajs_1668	COG0688	phosphatidylethanolamine metabolic process
Ajs_1670	COG0361	One of the essential components for the initiation of protein synthesis. Stabilizes the binding of IF-2 and IF-3 on the 30S subunit to which N-formylmethionyl-tRNA(fMet) subsequently binds. Helps modulate mRNA selection, yielding the 30S pre- initiation complex (PIC). Upon addition of the 50S ribosomal subunit IF-1, IF-2 and IF-3 are released leaving the mature 70S translation initation complex
Ajs_1673	COG0760	Chaperone involved in the correct folding and assembly of outer membrane proteins. Recognizes specific patterns of aromatic residues and the orientation of their side chains, which are found more frequently in integral outer membrane proteins. May act in both early periplasmic and late outer membrane-associated steps of protein maturation
Ajs_1675	COG2917	probably involved in intracellular septation
Ajs_1676	COG0229	Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine
Ajs_1677	COG0397	Uncharacterized ACR, YdiU/UPF0061 family
Ajs_1678	COG0318	PFAM AMP-dependent synthetase and ligase
Ajs_1680	COG0559	Belongs to the binding-protein-dependent transport system permease family
Ajs_1682	COG0411	ABC transporter
Ajs_1685	COG0183	Belongs to the thiolase family
Ajs_1686	COG3706	GGDEF domain
Ajs_1686	COG0745	RESPONSE REGULATOR receiver
Ajs_1687	COG1960	acyl-CoA dehydrogenase activity
Ajs_1689	COG3639	organic phosphonate transmembrane transporter activity
Ajs_1690	COG3638	Part of the ABC transporter complex PhnCDE involved in phosphonates import. Responsible for energy coupling to the transport system
Ajs_1691	COG3221	ABC-type phosphate phosphonate transport system periplasmic component
Ajs_1697	COG2130	NADP-dependent
Ajs_1698	COG2153	protein acetylation
Ajs_1702	COG2814	Major facilitator Superfamily
Ajs_1703	COG2814	Major facilitator Superfamily
Ajs_1707	COG2183	response to ionizing radiation
Ajs_1714	COG2153	protein acetylation
Ajs_1715	COG0354	folic acid binding
Ajs_1716	COG1559	Functions as a peptidoglycan terminase that cleaves nascent peptidoglycan strands endolytically to terminate their elongation
Ajs_1717	COG0125	Phosphorylation of dTMP to form dTDP in both de novo and salvage pathways of dTTP synthesis
Ajs_1718	COG0470	DNA polymerase III
Ajs_1720	COG0084	hydrolase, TatD family'
Ajs_1722	COG1132	(ABC) transporter
Ajs_1723	COG0823	Involved in the tonB-independent uptake of proteins
Ajs_1725	COG1729	Mediates coordination of peptidoglycan synthesis and outer membrane constriction during cell division
Ajs_1726	COG1179	involved in molybdopterin and THIamine biosynthesis family 1
Ajs_1733	COG1484	DNA-dependent DNA replication
Ajs_1736	COG4584	PFAM Integrase catalytic
Ajs_1742	COG0741	lytic transglycosylase activity
Ajs_1742	COG1388	LysM domain
Ajs_1743	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
Ajs_1744	COG2226	methyltransferase
Ajs_1745	COG0328	RNA-DNA hybrid ribonuclease activity
Ajs_1748	COG0746	molybdenum cofactor guanylyltransferase activity
Ajs_1749	COG2896	Catalyzes the cyclization of GTP to (8S)-3',8-cyclo-7,8- dihydroguanosine 5'-triphosphate
Ajs_1753	COG3039	Transposase
Ajs_1758	COG0221	Catalyzes the hydrolysis of inorganic pyrophosphate (PPi) forming two phosphate ions
Ajs_1759	COG0835	chemotaxis
Ajs_1761	COG0388	Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source
Ajs_1761	COG0171	NAD+ synthase (glutamine-hydrolyzing) activity
Ajs_1762	COG0347	Belongs to the P(II) protein family
Ajs_1768	COG1595	DNA-templated transcription, initiation
Ajs_1769	COG0028	Belongs to the TPP enzyme family
Ajs_1770	COG0440	acetolactate synthase activity
Ajs_1771	COG0059	Involved in the biosynthesis of branched-chain amino acids (BCAA). Catalyzes an alkyl-migration followed by a ketol- acid reduction of (S)-2-acetolactate (S2AL) to yield (R)-2,3- dihydroxy-isovalerate. In the isomerase reaction, S2AL is rearranged via a Mg-dependent methyl migration to produce 3- hydroxy-3-methyl-2-ketobutyrate (HMKB). In the reductase reaction, this 2-ketoacid undergoes a metal-dependent reduction by NADPH to yield (R)-2,3-dihydroxy-isovalerate
Ajs_1772	COG1183	phosphatidylcholine synthase activity
Ajs_1774	COG0119	Catalyzes the condensation of the acetyl group of acetyl-CoA with 3-methyl-2-oxobutanoate (2-oxoisovalerate) to form 3-carboxy-3-hydroxy-4-methylpentanoate (2-isopropylmalate)
Ajs_1776	COG1414	Transcriptional regulator
Ajs_1780	COG1024	Enoyl-CoA hydratase
Ajs_1781	COG1250	3-hydroxyacyl-CoA dehydrogenase
Ajs_1784	COG2022	thiamine diphosphate biosynthetic process
Ajs_1787	COG0351	phosphomethylpyrimidine kinase
Ajs_1789	COG0492	ferredoxin-NADP+ reductase activity
Ajs_1790	COG1146	Ferredoxins are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions
Ajs_1791	COG2895	sulfate adenylyltransferase (ATP) activity
Ajs_1792	COG0175	sulfate reduction
Ajs_1793	COG0175	sulfate reduction
Ajs_1796	COG4121	Catalyzes the last two steps in the biosynthesis of 5- methylaminomethyl-2-thiouridine (mnm(5)s(2)U) at the wobble position (U34) in tRNA. Catalyzes the FAD-dependent demodification of cmnm(5)s(2)U34 to nm(5)s(2)U34, followed by the transfer of a methyl group from S-adenosyl-L-methionine to nm(5)s(2)U34, to form mnm(5)s(2)U34
Ajs_1796	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
Ajs_1797	COG2860	membrane
Ajs_1798	COG2924	Could be a mediator in iron transactions between iron acquisition and iron-requiring processes, such as synthesis and or repair of Fe-S clusters in biosynthetic enzymes
Ajs_1799	COG1613	Sulfate ABC transporter periplasmic sulfate-binding protein
Ajs_1800	COG0625	glutathione transferase activity
Ajs_1801	COG0415	Belongs to the DNA photolyase family
Ajs_1810	COG4166	transmembrane transport
Ajs_1811	COG4174	ABC transporter (Permease)
Ajs_1812	COG4239	(ABC) transporter, permease
Ajs_1813	COG4172	Belongs to the ABC transporter superfamily
Ajs_1815	COG3622	Belongs to the hyi family
Ajs_1816	COG0589	response to stress
Ajs_1822	COG0567	Dehydrogenase, E1 component
Ajs_1823	COG0508	dehydrogenase complex catalyzes the overall conversion of
Ajs_1824	COG1249	Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family
Ajs_1825	COG1485	Reduces the stability of FtsZ polymers in the presence of ATP
Ajs_1827	COG0631	protein serine/threonine phosphatase activity
Ajs_1828	COG1199	ATP-dependent helicase activity
Ajs_1831	COG2127	Involved in the modulation of the specificity of the ClpAP-mediated ATP-dependent protein degradation
Ajs_1832	COG0542	response to heat
Ajs_1836	COG1136	(ABC) transporter
Ajs_1837	COG2951	lytic endotransglycosylase activity
Ajs_1838	COG2925	Exonuclease
Ajs_1840	COG3284	Transcriptional regulator
Ajs_1842	COG4644	lycopene metabolic process
Ajs_1844	COG2801	Transposase and inactivated derivatives
Ajs_1845	COG2963	transposase activity
Ajs_1854	COG1484	DNA-dependent DNA replication
Ajs_1855	COG4584	PFAM Integrase catalytic
Ajs_1869	COG2323	membrane
Ajs_1890	COG1012	belongs to the aldehyde dehydrogenase family
Ajs_1891	COG1283	sodium-dependent phosphate transmembrane transporter activity
Ajs_1892	COG0628	permease
Ajs_1893	COG0035	Catalyzes the conversion of uracil and 5-phospho-alpha- D-ribose 1-diphosphate (PRPP) to UMP and diphosphate
Ajs_1896	COG3604	Transcriptional regulator
Ajs_1897	COG0433	COG0433 Predicted ATPase
Ajs_1898	COG0217	transcriptional regulatory protein
Ajs_1899	COG0151	Belongs to the GarS family
Ajs_1900	COG0408	coproporphyrinogen oxidase activity
Ajs_1901	COG0799	negative regulation of ribosome biogenesis
Ajs_1902	COG1576	Specifically methylates the pseudouridine at position 1915 (m3Psi1915) in 23S rRNA
Ajs_1903	COG0424	maF-like protein
Ajs_1910	COG3391	amine dehydrogenase activity
Ajs_1911	COG2010	Cytochrome c
Ajs_1913	COG1648	precorrin-2 dehydrogenase activity
Ajs_1913	COG0007	Multifunctional enzyme that catalyzes the SAM-dependent methylations of uroporphyrinogen III at position C-2 and C-7 to form precorrin-2 via precorrin-1. Then it catalyzes the NAD- dependent ring dehydrogenation of precorrin-2 to yield sirohydrochlorin. Finally, it catalyzes the ferrochelation of sirohydrochlorin to yield siroheme
Ajs_1914	COG1530	ribonuclease E activity
Ajs_1915	COG0436	Aminotransferase
Ajs_1917	COG0583	DNA-binding transcription factor activity
Ajs_1921	COG0260	Presumably involved in the processing and regular turnover of intracellular proteins. Catalyzes the removal of unsubstituted N-terminal amino acids from various peptides
Ajs_1925	COG0683	leucine binding
Ajs_1926	COG1052	Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family
Ajs_1929	COG0589	response to stress
Ajs_1931	COG0183	Belongs to the thiolase family
Ajs_1932	COG1028	Short-chain dehydrogenase reductase Sdr
Ajs_1935	COG0545	Peptidyl-prolyl cis-trans isomerase
Ajs_1936	COG0403	The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor
Ajs_1936	COG1003	The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor
Ajs_1938	COG0404	The glycine cleavage system catalyzes the degradation of glycine
Ajs_1941	COG1638	TRAP-type C4-dicarboxylate transport system periplasmic component
Ajs_1948	COG4120	Belongs to the binding-protein-dependent transport system permease family
Ajs_1952	COG0642	Histidine kinase
Ajs_1953	COG0745	RESPONSE REGULATOR receiver
Ajs_1958	COG0753	catalase activity
Ajs_1959	COG1252	NADH dehydrogenase
Ajs_1963	COG2206	PFAM metal-dependent phosphohydrolase, HD sub domain
Ajs_1966	COG0389	Poorly processive, error-prone DNA polymerase involved in untargeted mutagenesis. Copies undamaged DNA at stalled replication forks, which arise in vivo from mismatched or misaligned primer ends. These misaligned primers can be extended by PolIV. Exhibits no 3'-5' exonuclease (proofreading) activity. May be involved in translesional synthesis, in conjunction with the beta clamp from PolIII
Ajs_1967	COG0587	DNA-directed DNA polymerase activity
Ajs_1977	COG0582	viral genome integration into host DNA
Ajs_1978	COG1012	belongs to the aldehyde dehydrogenase family
Ajs_1979	COG0013	Catalyzes the attachment of alanine to tRNA(Ala) in a two-step reaction alanine is first activated by ATP to form Ala- AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain
Ajs_1980	COG3706	GGDEF domain
Ajs_1981	COG0220	tRNA (guanine-N7-)-methyltransferase activity
Ajs_1982	COG0008	Catalyzes the attachment of glutamate to tRNA(Glu) in a two-step reaction glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu)
Ajs_1983	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
Ajs_1983	COG4121	Catalyzes the last two steps in the biosynthesis of 5- methylaminomethyl-2-thiouridine (mnm(5)s(2)U) at the wobble position (U34) in tRNA. Catalyzes the FAD-dependent demodification of cmnm(5)s(2)U34 to nm(5)s(2)U34, followed by the transfer of a methyl group from S-adenosyl-L-methionine to nm(5)s(2)U34, to form mnm(5)s(2)U34
Ajs_1984	COG0583	DNA-binding transcription factor activity
Ajs_1985	COG1741	Belongs to the pirin family
Ajs_1986	COG2259	Doxx family
Ajs_1987	COG2935	proteasome-mediated ubiquitin-dependent protein catabolic process
Ajs_1988	COG2360	Functions in the N-end rule pathway of protein degradation where it conjugates Leu, Phe and, less efficiently, Met from aminoacyl-tRNAs to the N-termini of proteins containing an N-terminal arginine or lysine
Ajs_1990	COG4948	Mandelate Racemase Muconate Lactonizing
Ajs_1991	COG1052	Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family
Ajs_1993	COG0329	Catalyzes the condensation of (S)-aspartate-beta- semialdehyde (S)-ASA and pyruvate to 4-hydroxy- tetrahydrodipicolinate (HTPA)
Ajs_1995	COG2186	Transcriptional regulator
Ajs_1996	COG4948	Mandelate Racemase Muconate Lactonizing
Ajs_1998	COG2721	sulfolactate sulfo-lyase activity
Ajs_1999	COG3386	PFAM SMP-30 Gluconolaconase
Ajs_2000	COG3171	Protein conserved in bacteria
Ajs_2001	COG0133	tryptophan synthase activity
Ajs_2004	COG3039	Transposase
Ajs_2007	COG1960	acyl-CoA dehydrogenase activity
Ajs_2010	COG0583	DNA-binding transcription factor activity
Ajs_2014	COG2133	pyrroloquinoline quinone binding
Ajs_2023	COG1670	COG1670 acetyltransferases, including N-acetylases of ribosomal proteins
Ajs_2023	COG0045	succinate-CoA ligase (ADP-forming) activity
Ajs_2023	COG1042	CoA-binding domain protein
Ajs_2025	COG0262	Key enzyme in folate metabolism. Catalyzes an essential reaction for de novo glycine and purine synthesis, and for DNA precursor synthesis
Ajs_2028	COG2518	Catalyzes the methyl esterification of L-isoaspartyl residues in peptides and proteins that result from spontaneous decomposition of normal L-aspartyl and L-asparaginyl residues. It plays a role in the repair and or degradation of damaged proteins
Ajs_2029	COG1309	transcriptional regulator
Ajs_2030	COG0225	Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine
Ajs_2038	COG1022	Amp-dependent synthetase and ligase
Ajs_2039	COG1802	Transcriptional regulator
Ajs_2041	COG1703	isobutyryl-CoA mutase activity
Ajs_2042	COG4799	Acetyl-CoA carboxylase, carboxyltransferase component subunits alpha and beta
Ajs_2043	COG0439	Biotin carboxylase
Ajs_2045	COG0502	Catalyzes the conversion of dethiobiotin (DTB) to biotin by the insertion of a sulfur atom into dethiobiotin via a radical- based mechanism
Ajs_2046	COG1028	Short-chain dehydrogenase reductase Sdr
Ajs_2047	COG0346	lactoylglutathione lyase activity
Ajs_2048	COG0800	Aldolase
Ajs_2050	COG1638	TRAP-type C4-dicarboxylate transport system periplasmic component
Ajs_2051	COG1593	TRAP-type C4-dicarboxylate transport system, large permease component
Ajs_2052	COG3090	Trap-type c4-dicarboxylate transport system, small permease component
Ajs_2053	COG3265	gluconokinase activity
Ajs_2054	COG1609	Transcriptional regulator
Ajs_2057	COG2032	superoxide dismutase activity
Ajs_2058	COG0259	pyridoxamine-phosphate oxidase activity
Ajs_2064	COG2878	Part of a membrane complex involved in electron transport
Ajs_2067	COG2171	N-acyltransferase activity
Ajs_2069	COG0624	Catalyzes the hydrolysis of N-succinyl-L,L- diaminopimelic acid (SDAP), forming succinate and LL-2,6- diaminoheptanedioate (DAP), an intermediate involved in the bacterial biosynthesis of lysine and meso-diaminopimelic acid, an essential component of bacterial cell walls
Ajs_2070	COG2890	protein-(glutamine-N5) methyltransferase activity
Ajs_2072	COG1028	Short-chain dehydrogenase reductase Sdr
Ajs_2073	COG0183	Belongs to the thiolase family
Ajs_2074	COG3243	poly(R)-hydroxyalkanoic acid synthase
Ajs_2082	COG1752	Esterase of the alpha-beta hydrolase superfamily
Ajs_2083	COG0272	DNA ligase that catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double-stranded DNA using NAD as a coenzyme and as the energy source for the reaction. It is essential for DNA replication and repair of damaged DNA
Ajs_2086	COG1196	nuclear chromosome segregation
Ajs_2087	COG1742	UPF0060 membrane protein
Ajs_2089	COG1132	(ABC) transporter
Ajs_2090	COG2814	Major facilitator Superfamily
Ajs_2091	COG0791	NLP P60 protein
Ajs_2094	COG1092	Specifically methylates the guanine in position 2445 (m2G2445) and the guanine in position 2069 (m7G2069) of 23S rRNA
Ajs_2096	COG1249	Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family
Ajs_2106	COG1285	pathogenesis
Ajs_2110	COG3315	Exhibits S-adenosyl-L-methionine-dependent methyltransferase activity
Ajs_2120	COG1959	2 iron, 2 sulfur cluster binding
Ajs_2123	COG1249	Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family
Ajs_2124	COG0508	dehydrogenase complex catalyzes the overall conversion of
Ajs_2125	COG2609	component of the pyruvate dehydrogenase (PDH) complex, that catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2)
Ajs_2127	COG4566	intracellular signal transduction
Ajs_2128	COG0190	Catalyzes the oxidation of 5,10- methylenetetrahydrofolate to 5,10-methenyltetrahydrofolate and then the hydrolysis of 5,10-methenyltetrahydrofolate to 10- formyltetrahydrofolate
Ajs_2131	COG0120	Catalyzes the reversible conversion of ribose-5- phosphate to ribulose 5-phosphate
Ajs_2132	COG0167	dihydroorotate dehydrogenase activity
Ajs_2136	COG0579	oxidoreductase
Ajs_2139	COG0633	Ferredoxin
Ajs_2140	COG0443	Heat shock 70 kDa protein
Ajs_2143	COG0822	iron-sulfur transferase activity
Ajs_2144	COG1104	cysteine desulfurase activity
Ajs_2145	COG1959	2 iron, 2 sulfur cluster binding
Ajs_2152	COG0840	transmembrane signaling receptor activity
Ajs_2153	COG1804	L-carnitine dehydratase bile acid-inducible protein F
Ajs_2157	COG2826	transposase and inactivated derivatives, IS30 family
Ajs_2163	COG1052	Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family
Ajs_2164	COG1080	General (non sugar-specific) component of the phosphoenolpyruvate-dependent sugar phosphotransferase system (sugar PTS). This major carbohydrate active-transport system catalyzes the phosphorylation of incoming sugar substrates concomitantly with their translocation across the cell membrane. Enzyme I transfers the phosphoryl group from phosphoenolpyruvate (PEP) to the phosphoryl carrier protein (HPr)
Ajs_2164	COG0574	Belongs to the PEP-utilizing enzyme family
Ajs_2184	COG2003	Belongs to the UPF0758 family
Ajs_2198	COG0553	Transcription regulator that activates transcription by stimulating RNA polymerase (RNAP) recycling in case of stress conditions such as supercoiled DNA or high salt concentrations. Probably acts by releasing the RNAP, when it is trapped or immobilized on tightly supercoiled DNA. Does not activate transcription on linear DNA. Probably not involved in DNA repair
Ajs_2214	COG1396	sequence-specific DNA binding
Ajs_2233	COG0550	Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supercoils. Finally, in the religation step, the DNA 3'-OH attacks the covalent intermediate to expel the active-site tyrosine and restore the DNA phosphodiester backbone
Ajs_2239	COG3077	Addiction module antitoxin, RelB DinJ family
Ajs_2244	COG1739	Uncharacterized protein family UPF0029
Ajs_2245	COG1249	Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family
Ajs_2248	COG0154	amidase activity
Ajs_2250	COG3048	D-serine ammonia-lyase activity
Ajs_2251	COG0583	DNA-binding transcription factor activity
Ajs_2253	COG3550	peptidyl-serine autophosphorylation
Ajs_2254	COG0583	DNA-binding transcription factor activity
Ajs_2258	COG0179	Fumarylacetoacetate (FAA) hydrolase
Ajs_2261	COG0108	Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate
Ajs_2262	COG0846	NAD-dependent lysine deacetylase and desuccinylase that specifically removes acetyl and succinyl groups on target proteins. Modulates the activities of several proteins which are inactive in their acylated form
Ajs_2264	COG5507	3-demethylubiquinone-9 3-methyltransferase
Ajs_2268	COG0566	Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family
Ajs_2269	COG3633	Involved in the import of serine and threonine into the cell, with the concomitant import of sodium (symport system)
Ajs_2270	COG4181	ATPase activity
Ajs_2273	COG0626	cystathionine gamma-synthase activity
Ajs_2276	COG3706	GGDEF domain
Ajs_2277	COG0455	bacterial-type flagellum organization
Ajs_2278	COG1741	Belongs to the pirin family
Ajs_2281	COG1619	proteins homologs of microcin C7 resistance protein MccF
Ajs_2282	COG0590	tRNA wobble adenosine to inosine editing
Ajs_2284	COG0786	glutamate:sodium symporter activity
Ajs_2285	COG0826	peptidase U32
Ajs_2287	COG1262	PFAM Formylglycine-generating sulfatase enzyme
Ajs_2288	COG4301	Catalyzes the SAM-dependent triple methylation of the alpha-amino group of histidine to form hercynine, a step in the biosynthesis pathway of ergothioneine
Ajs_2289	COG3047	cAMP biosynthetic process
Ajs_2290	COG2354	Protein conserved in bacteria
Ajs_2293	COG0024	Methionine aminopeptidase
Ajs_2295	COG0242	peptide deformylase activity
Ajs_2296	COG2832	Protein of unknown function (DUF454)
Ajs_2301	COG0605	Destroys radicals which are normally produced within the cells and which are toxic to biological systems
Ajs_2302	COG1570	exodeoxyribonuclease VII activity
Ajs_2303	COG0811	peptide transport
Ajs_2304	COG0848	biopolymer transport protein
Ajs_2305	COG1663	tetraacyldisaccharide 4'-kinase activity
Ajs_2306	COG2835	tetraacyldisaccharide 4'-kinase activity
Ajs_2307	COG1212	Activates KDO (a required 8-carbon sugar) for incorporation into bacterial lipopolysaccharide in Gram-negative bacteria
Ajs_2308	COG0563	adenylate kinase activity
Ajs_2309	COG0252	asparaginase activity
Ajs_2310	COG1974	Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair
Ajs_2313	COG1643	Atp-dependent helicase
Ajs_2315	COG1408	metallophosphoesterase
Ajs_2318	COG0318	PFAM AMP-dependent synthetase and ligase
Ajs_2319	COG1268	BioY protein
Ajs_2321	COG1122	ATPase activity
Ajs_2322	COG2814	Major facilitator Superfamily
Ajs_2325	COG3181	Tripartite tricarboxylate transporter family receptor
Ajs_2326	COG2755	lipolytic protein G-D-S-L family
Ajs_2326	COG1835	transferase activity, transferring acyl groups other than amino-acyl groups
Ajs_2327	COG1246	Belongs to the acetyltransferase family. ArgA subfamily
Ajs_2327	COG0548	Belongs to the acetylglutamate kinase family. ArgB subfamily
Ajs_2334	COG1495	Required for disulfide bond formation in some periplasmic proteins. Acts by oxidizing the DsbA protein
Ajs_2335	COG1118	Part of the ABC transporter complex CysAWTP involved in sulfate thiosulfate import. Responsible for energy coupling to the transport system
Ajs_2336	COG4208	sulfate ABC transporter
Ajs_2337	COG0555	PFAM binding-protein-dependent transport systems inner membrane component
Ajs_2338	COG1613	Sulfate ABC transporter periplasmic sulfate-binding protein
Ajs_2340	COG1182	Catalyzes the reductive cleavage of azo bond in aromatic azo compounds to the corresponding amines. Requires NADH, but not NADPH, as an electron donor for its activity
Ajs_2342	COG1464	Belongs to the NlpA lipoprotein family
Ajs_2344	COG2011	ABC-type metal ion transport system permease component
Ajs_2345	COG1135	Part of the ABC transporter complex MetNIQ involved in methionine import. Responsible for energy coupling to the transport system
Ajs_2348	COG0353	May play a role in DNA repair. It seems to be involved in an RecBC-independent recombinational process of DNA repair. It may act with RecF and RecO
Ajs_2349	COG0718	Binds to DNA and alters its conformation. May be involved in regulation of gene expression, nucleoid organization and DNA protection
Ajs_2350	COG2812	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity
Ajs_2353	COG0492	ferredoxin-NADP+ reductase activity
Ajs_2354	COG2226	methyltransferase
Ajs_2355	COG1074	ATP-dependent DNA helicase activity
Ajs_2358	COG1158	Facilitates transcription termination by a mechanism that involves Rho binding to the nascent RNA, activation of Rho's RNA-dependent ATPase activity, and release of the mRNA from the DNA template
Ajs_2360	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
Ajs_2361	COG0842	Transport permease protein
Ajs_2361	COG1129	ABC transporter
Ajs_2362	COG0842	Transport permease protein
Ajs_2363	COG0254	rRNA binding
Ajs_2365	COG0534	Mate efflux family protein
Ajs_2367	COG0745	RESPONSE REGULATOR receiver
Ajs_2368	COG0704	Plays a role in the regulation of phosphate uptake
Ajs_2369	COG1117	ATPase-coupled phosphate ion transmembrane transporter activity
Ajs_2370	COG0581	inorganic phosphate transmembrane transporter activity
Ajs_2371	COG0573	inorganic phosphate transmembrane transporter activity
Ajs_2372	COG0226	Part of the ABC transporter complex PstSACB involved in phosphate import
Ajs_2373	COG2335	COG2335, Secreted and surface protein containing fasciclin-like repeats
Ajs_2378	COG0855	Catalyzes the reversible transfer of the terminal phosphate of ATP to form a long-chain polyphosphate (polyP)
Ajs_2381	COG1109	Catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate
Ajs_2383	COG0465	Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins
Ajs_2384	COG0293	Specifically methylates the uridine in position 2552 of 23S rRNA at the 2'-O position of the ribose in the fully assembled 50S ribosomal subunit
Ajs_2385	COG1534	Rna-binding protein
Ajs_2389	COG0782	Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus
Ajs_2390	COG0458	carbamoyl-phosphate synthase (glutamine-hydrolyzing) activity
Ajs_2392	COG0505	Belongs to the CarA family
Ajs_2393	COG0789	Transcriptional regulator
Ajs_2394	COG0776	regulation of translation
Ajs_2395	COG0073	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
Ajs_2395	COG0072	phenylalanine-tRNA ligase activity
Ajs_2396	COG0016	Belongs to the class-II aminoacyl-tRNA synthetase family. Phe-tRNA synthetase alpha subunit type 1 subfamily
Ajs_2397	COG0292	Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit
Ajs_2398	COG0291	Belongs to the bacterial ribosomal protein bL35 family
Ajs_2399	COG0290	IF-3 binds to the 30S ribosomal subunit and shifts the equilibrum between 70S ribosomes and their 50S and 30S subunits in favor of the free subunits, thus enhancing the availability of 30S subunits on which protein synthesis initiation begins
Ajs_2400	COG0441	Catalyzes the attachment of threonine to tRNA(Thr) in a two-step reaction L-threonine is first activated by ATP to form Thr-AMP and then transferred to the acceptor end of tRNA(Thr)
Ajs_2403	COG0684	Catalyzes the aldol cleavage of 4-hydroxy-4-methyl-2- oxoglutarate (HMG) into 2 molecules of pyruvate. Also contains a secondary oxaloacetate (OAA) decarboxylase activity due to the common pyruvate enolate transition state formed following C-C bond cleavage in the retro-aldol and decarboxylation reactions
Ajs_2410	COG3193	protein, possibly involved in utilization of glycolate and propanediol
Ajs_2411	COG0670	Belongs to the BI1 family
Ajs_2413	COG2265	Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family
Ajs_2431	COG0745	RESPONSE REGULATOR receiver
Ajs_2432	COG0642	Histidine kinase
Ajs_2433	COG0526	COG0526, thiol-disulfide isomerase and thioredoxins
Ajs_2435	COG0640	Transcriptional regulator
Ajs_2442	COG0304	beta-ketoacyl-acyl-carrier-protein synthase II activity
Ajs_2443	COG4584	PFAM Integrase catalytic
Ajs_2448	COG5377	YqaJ viral recombinase family
Ajs_2455	COG4372	Transposase
Ajs_2460	COG0582	viral genome integration into host DNA
Ajs_2462	COG2227	3-demethylubiquinone-9 3-O-methyltransferase activity
Ajs_2465	COG1932	Catalyzes the reversible conversion of 3- phosphohydroxypyruvate to phosphoserine and of 3-hydroxy-2-oxo-4- phosphonooxybutanoate to phosphohydroxythreonine
Ajs_2466	COG0077	Prephenate dehydratase
Ajs_2466	COG1605	Chorismate mutase
Ajs_2467	COG0287	Prephenate dehydrogenase
Ajs_2468	COG0128	3-phosphoshikimate 1-carboxyvinyltransferase activity
Ajs_2470	COG0776	regulation of translation
Ajs_2472	COG2956	Modulates cellular lipopolysaccharide (LPS) levels by regulating LpxC, which is involved in lipid A biosynthesis. May act by modulating the proteolytic activity of FtsH towards LpxC. May also coordinate assembly of proteins involved in LPS synthesis at the plasma membrane
Ajs_2474	COG2111	Na H antiporter
Ajs_2474	COG1009	NADH ubiquinone oxidoreductase subunit 5 chain L Multisubunit Na H antiporter, MnhA subunit
Ajs_2475	COG1006	Multisubunit Na H antiporter MnhC subunit
Ajs_2476	COG0651	ATP synthesis coupled electron transport
Ajs_2478	COG2212	antiporter activity
Ajs_2486	COG0239	Important for reducing fluoride concentration in the cell, thus reducing its toxicity
Ajs_2487	COG1611	Belongs to the LOG family
Ajs_2489	COG1322	Protein conserved in bacteria
Ajs_2490	COG1052	Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family
Ajs_2492	COG1488	Catalyzes the synthesis of beta-nicotinate D- ribonucleotide from nicotinate and 5-phospho-D-ribose 1-phosphate at the expense of ATP
Ajs_2505	COG0564	pseudouridine synthase activity
Ajs_2506	COG1285	pathogenesis
Ajs_2510	COG1161	Required for a late step of 50S ribosomal subunit assembly. Has GTPase activity
Ajs_2517	COG0798	PFAM Bile acid sodium symporter
Ajs_2519	COG0583	DNA-binding transcription factor activity
Ajs_2521	COG2918	glutathione biosynthetic process
Ajs_2522	COG1028	Short-chain dehydrogenase reductase Sdr
Ajs_2527	COG1196	nuclear chromosome segregation
Ajs_2528	COG0226	Part of the ABC transporter complex PstSACB involved in phosphate import
Ajs_2529	COG1061	Type III restriction enzyme res subunit
Ajs_2530	COG1002	Type II restriction enzyme, methylase subunits
Ajs_2546	COG0582	viral genome integration into host DNA
Ajs_2547	COG0518	GMP synthase (glutamine-hydrolyzing) activity
Ajs_2547	COG0519	Catalyzes the synthesis of GMP from XMP
Ajs_2551	COG2867	negative regulation of translational initiation
Ajs_2552	COG0691	Required for rescue of stalled ribosomes mediated by trans-translation. Binds to transfer-messenger RNA (tmRNA), required for stable association of tmRNA with ribosomes. tmRNA and SmpB together mimic tRNA shape, replacing the anticodon stem-loop with SmpB. tmRNA is encoded by the ssrA gene
Ajs_2556	COG1024	Enoyl-CoA hydratase
Ajs_2559	COG0130	Responsible for synthesis of pseudouridine from uracil- 55 in the psi GC loop of transfer RNAs
Ajs_2560	COG0858	One of several proteins that assist in the late maturation steps of the functional core of the 30S ribosomal subunit. Associates with free 30S ribosomal subunits (but not with 30S subunits that are part of 70S ribosomes or polysomes). Required for efficient processing of 16S rRNA. May interact with the 5'-terminal helix region of 16S rRNA
Ajs_2561	COG0532	One of the essential components for the initiation of protein synthesis. Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex
Ajs_2562	COG0195	Participates in both transcription termination and antitermination
Ajs_2563	COG0779	Required for maturation of 30S ribosomal subunits
Ajs_2565	COG1529	Aldehyde oxidase and xanthine dehydrogenase
Ajs_2565	COG2010	Cytochrome c
Ajs_2568	COG0557	exoribonuclease II activity
Ajs_2570	COG0566	Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family
Ajs_2571	COG0164	Endonuclease that specifically degrades the RNA of RNA- DNA hybrids
Ajs_2572	COG0763	Condensation of UDP-2,3-diacylglucosamine and 2,3- diacylglucosamine-1-phosphate to form lipid A disaccharide, a precursor of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell
Ajs_2573	COG1043	involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell
Ajs_2574	COG0764	3-hydroxyoctanoyl-[acyl-carrier-protein] dehydratase activity
Ajs_2575	COG1044	Catalyzes the N-acylation of UDP-3-O-acylglucosamine using 3-hydroxyacyl-ACP as the acyl donor. Is involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell
Ajs_2578	COG0750	zinc metalloprotease
Ajs_2579	COG0743	1-deoxy-D-xylulose-5-phosphate reductoisomerase activity
Ajs_2580	COG0575	Belongs to the CDS family
Ajs_2581	COG0020	Catalyzes the condensation of isopentenyl diphosphate (IPP) with allylic pyrophosphates generating different type of terpenoids
Ajs_2582	COG0233	cytoplasmic translational termination
Ajs_2583	COG0528	UMP kinase activity
Ajs_2584	COG0264	Associates with the EF-Tu.GDP complex and induces the exchange of GDP to GTP. It remains bound to the aminoacyl-tRNA.EF- Tu.GTP complex up to the GTP hydrolysis stage on the ribosome
Ajs_2585	COG0052	Belongs to the universal ribosomal protein uS2 family
Ajs_2588	COG0063	ADP-dependent NAD(P)H-hydrate dehydratase activity
Ajs_2593	COG0789	Transcriptional regulator
Ajs_2600	COG2132	Multicopper oxidase
Ajs_2605	COG3191	aminopeptidase activity
Ajs_2608	COG0488	(ABC) transporter
Ajs_2609	COG0513	Belongs to the DEAD box helicase family
Ajs_2620	COG0760	Chaperone involved in the correct folding and assembly of outer membrane proteins. Recognizes specific patterns of aromatic residues and the orientation of their side chains, which are found more frequently in integral outer membrane proteins. May act in both early periplasmic and late outer membrane-associated steps of protein maturation
Ajs_2621	COG0776	regulation of translation
Ajs_2623	COG0322	excinuclease ABC activity
Ajs_2636	COG2003	Belongs to the UPF0758 family
Ajs_2640	COG1475	DNA binding
Ajs_2644	COG5489	Protein of unknown function (DUF736)
Ajs_2658	COG4959	Type IV secretory pathway protease TraF
Ajs_2663	COG3328	transposase activity
Ajs_2673	COG1677	Flagellar hook-basal body complex protein FliE
Ajs_2674	COG0282	Catalyzes the formation of acetyl phosphate from acetate and ATP. Can also catalyze the reverse reaction
Ajs_2675	COG0789	Transcriptional regulator
Ajs_2676	COG2230	cyclopropane-fatty-acyl-phospholipid synthase
Ajs_2678	COG3957	D-xylulose 5-phosphate D-fructose 6-phosphate phosphoketolase
Ajs_2682	COG1052	Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family
Ajs_2683	COG2226	methyltransferase
Ajs_2688	COG0265	Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain
Ajs_2689	COG0462	Involved in the biosynthesis of the central metabolite phospho-alpha-D-ribosyl-1-pyrophosphate (PRPP) via the transfer of pyrophosphoryl group from ATP to 1-hydroxyl of ribose-5-phosphate (Rib-5-P)
Ajs_2690	COG0213	The enzymes which catalyze the reversible phosphorolysis of pyrimidine nucleosides are involved in the degradation of these compounds and in their utilization as carbon and energy sources, or in the rescue of pyrimidine bases for nucleotide synthesis
Ajs_2691	COG1236	Exonuclease of the beta-lactamase fold involved in RNA processing
Ajs_2693	COG1512	COG1512 Beta-propeller domains of methanol dehydrogenase type
Ajs_2697	COG2326	polyphosphate kinase activity
Ajs_2707	COG3174	membrane
Ajs_2718	COG3039	Transposase
Ajs_2726	COG2205	protein histidine kinase activity
Ajs_2734	COG0008	Catalyzes the attachment of glutamate to tRNA(Glu) in a two-step reaction glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu)
Ajs_2737	COG1286	toxin biosynthetic process
Ajs_2739	COG0285	dihydrofolate synthase activity
Ajs_2740	COG1393	Belongs to the ArsC family
Ajs_2742	COG3123	guanosine phosphorylase activity
Ajs_2743	COG0137	argininosuccinate synthase activity
Ajs_2744	COG0603	Catalyzes the ATP-dependent conversion of 7-carboxy-7- deazaguanine (CDG) to 7-cyano-7-deazaguanine (preQ(0))
Ajs_2745	COG1738	Involved in the import of queuosine (Q) precursors, required for Q precursor salvage
Ajs_2746	COG1595	DNA-templated transcription, initiation
Ajs_2747	COG2128	Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity
Ajs_2748	COG0471	metal ion transport
Ajs_2750	COG1666	GTP binding
Ajs_2751	COG3577	Aspartyl protease
Ajs_2753	COG0344	acyl-phosphate glycerol-3-phosphate acyltransferase activity
Ajs_2755	COG0667	Aldo Keto reductase
Ajs_2759	COG0308	aminopeptidase N
Ajs_2760	COG0158	D-fructose-1,6-bisphosphate 1-phosphohydrolase class 1
Ajs_2761	COG1793	dna ligase
Ajs_2762	COG1982	Orn Lys Arg decarboxylase major
Ajs_2767	COG0054	6,7-dimethyl-8-ribityllumazine synthase activity
Ajs_2768	COG0781	Involved in transcription antitermination. Required for transcription of ribosomal RNA (rRNA) genes. Binds specifically to the boxA antiterminator sequence of the ribosomal RNA (rrn) operons
Ajs_2769	COG0436	Aminotransferase
Ajs_2770	COG0824	Thioesterase
Ajs_2774	COG0477	Major facilitator Superfamily
Ajs_2776	COG0843	Cytochrome c oxidase is the component of the respiratory chain that catalyzes the reduction of oxygen to water. Subunits 1- 3 form the functional core of the enzyme complex. CO I is the catalytic subunit of the enzyme. Electrons originating in cytochrome c are transferred via the copper A center of subunit 2 and heme A of subunit 1 to the bimetallic center formed by heme A3 and copper B
Ajs_2777	COG1845	cytochrome c oxidase, subunit III
Ajs_2778	COG3125	oxidoreductase activity, acting on diphenols and related substances as donors, oxygen as acceptor
Ajs_2781	COG4567	Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain
Ajs_2790	COG4106	trans-aconitate 2-methyltransferase activity
Ajs_2791	COG0039	L-malate dehydrogenase activity
Ajs_2792	COG2188	Transcriptional regulator
Ajs_2795	COG1053	succinate dehydrogenase
Ajs_2796	COG0479	Belongs to the succinate dehydrogenase fumarate reductase iron-sulfur protein family
Ajs_2797	COG2938	An FAD assembly protein, which accelerates covalent attachment of the cofactor into other proteins. Plays an essential role in the assembly of succinate dehydrogenase (SDH, respiratory complex II), an enzyme complex that is a component of both the tricarboxylic acid cycle and the electron transport chain, and which couples the oxidation of succinate to fumarate with the reduction of ubiquinone (coenzyme Q) to ubiquinol. Required for flavinylation (covalent attachment of FAD) of the flavoprotein subunit SdhA of SDH
Ajs_2798	COG0372	Belongs to the citrate synthase family
Ajs_2800	COG1062	S-(hydroxymethyl)glutathione dehydrogenase activity
Ajs_2801	COG0627	Serine hydrolase involved in the detoxification of formaldehyde
Ajs_2805	COG0782	Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus
Ajs_2808	COG1960	acyl-CoA dehydrogenase activity
Ajs_2811	COG3264	Mechanosensitive ion channel
Ajs_2811	COG1511	domain protein
Ajs_2813	COG0123	including yeast histone deacetylase and acetoin utilization protein
Ajs_2814	COG0714	Associated with various cellular activities
Ajs_2817	COG2951	lytic endotransglycosylase activity
Ajs_2818	COG0583	DNA-binding transcription factor activity
Ajs_2820	COG0683	leucine binding
Ajs_2823	COG0577	efflux transmembrane transporter activity
Ajs_2823	COG1136	(ABC) transporter
Ajs_2824	COG1136	(ABC) transporter
Ajs_2824	COG0577	efflux transmembrane transporter activity
Ajs_2825	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
Ajs_2826	COG1538	Outer membrane efflux protein
Ajs_2827	COG1012	belongs to the aldehyde dehydrogenase family
Ajs_2828	COG0533	Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine. Is involved in the transfer of the threonylcarbamoyl moiety of threonylcarbamoyl-AMP (TC-AMP) to the N6 group of A37, together with TsaE and TsaB. TsaD likely plays a direct catalytic role in this reaction
Ajs_2831	COG0715	COG0715 ABC-type nitrate sulfonate bicarbonate transport systems periplasmic components
Ajs_2832	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
Ajs_2833	COG1116	anion transmembrane transporter activity
Ajs_2834	COG0517	IMP dehydrogenase activity
Ajs_2834	COG0516	GMP reductase activity
Ajs_2837	COG0841	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
Ajs_2838	COG1538	Outer membrane efflux protein
Ajs_2839	COG1251	Belongs to the nitrite and sulfite reductase 4Fe-4S domain family
Ajs_2840	COG2146	nitrite reductase [NAD(P)H] activity
Ajs_2841	COG0243	molybdopterin cofactor binding
Ajs_2842	COG0547	Catalyzes the transfer of the phosphoribosyl group of 5- phosphorylribose-1-pyrophosphate (PRPP) to anthranilate to yield N-(5'-phosphoribosyl)-anthranilate (PRA)
Ajs_2844	COG1607	acyl-coa hydrolase
Ajs_2846	COG2081	HI0933 family
Ajs_2850	COG0822	iron-sulfur transferase activity
Ajs_2851	COG0520	Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L- selenocystine to produce L-alanine
Ajs_2853	COG0396	ATPase activity
Ajs_2854	COG0719	Fe-S assembly protein
Ajs_2855	COG0640	Transcriptional regulator
Ajs_2858	COG0828	Belongs to the bacterial ribosomal protein bS21 family
Ajs_2859	COG1610	YqeY-like protein
Ajs_2860	COG0473	3-isopropylmalate dehydrogenase activity
Ajs_2862	COG1230	cation diffusion facilitator family transporter
Ajs_2867	COG0796	Provides the (R)-glutamate required for cell wall biosynthesis
Ajs_2868	COG1451	nucleotide metabolic process
Ajs_2871	COG0119	Catalyzes the condensation of the acetyl group of acetyl-CoA with 3-methyl-2-oxobutanoate (2-oxoisovalerate) to form 3-carboxy-3-hydroxy-4-methylpentanoate (2-isopropylmalate)
Ajs_2872	COG1804	L-carnitine dehydratase bile acid-inducible protein F
Ajs_2873	COG0583	DNA-binding transcription factor activity
Ajs_2875	COG0231	Involved in peptide bond synthesis. Stimulates efficient translation and peptide-bond synthesis on native or reconstituted 70S ribosomes in vitro. Probably functions indirectly by altering the affinity of the ribosome for aminoacyl-tRNA, thus increasing their reactivity as acceptors for peptidyl transferase
Ajs_2877	COG4147	Belongs to the sodium solute symporter (SSF) (TC 2.A.21) family
Ajs_2880	COG1806	Bifunctional serine threonine kinase and phosphorylase involved in the regulation of the
Ajs_2881	COG3634	alkyl hydroperoxide reductase activity
Ajs_2882	COG0450	alkyl hydroperoxide reductase
Ajs_2888	COG1289	transmembrane transporter activity
Ajs_2889	COG2352	Forms oxaloacetate, a four-carbon dicarboxylic acid source for the tricarboxylic acid cycle
Ajs_2890	COG0181	hydroxymethylbilane synthase activity
Ajs_2898	COG0425	Belongs to the sulfur carrier protein TusA family
Ajs_2899	COG2816	NAD+ diphosphatase activity
Ajs_2905	COG3846	protein secretion by the type IV secretion system
Ajs_2908	COG3451	type IV secretory pathway VirB4
Ajs_2910	COG3838	Conjugal transfer protein Trbc
Ajs_2911	COG4962	Type ii secretion system protein e
Ajs_2916	COG4372	Transposase
Ajs_2919	COG0583	DNA-binding transcription factor activity
Ajs_2927	COG3039	Transposase
Ajs_2932	COG1192	Involved in chromosome partitioning
Ajs_2939	COG5489	Protein of unknown function (DUF736)
Ajs_2947	COG1192	Involved in chromosome partitioning
Ajs_2952	COG0419	ATPase involved in DNA repair
Ajs_2954	COG3039	Transposase
Ajs_2958	COG3657	addiction module killer protein
Ajs_2961	COG0361	One of the essential components for the initiation of protein synthesis. Stabilizes the binding of IF-2 and IF-3 on the 30S subunit to which N-formylmethionyl-tRNA(fMet) subsequently binds. Helps modulate mRNA selection, yielding the 30S pre- initiation complex (PIC). Upon addition of the 50S ribosomal subunit IF-1, IF-2 and IF-3 are released leaving the mature 70S translation initation complex
Ajs_2962	COG0724	RNA recognition motif
Ajs_2964	COG0300	oxidoreductase activity
Ajs_2968	COG0840	transmembrane signaling receptor activity
Ajs_2969	COG2230	cyclopropane-fatty-acyl-phospholipid synthase
Ajs_2973	COG3040	lipid binding
Ajs_2977	COG1346	cytolysis
Ajs_2978	COG0583	DNA-binding transcription factor activity
Ajs_2979	COG1960	acyl-CoA dehydrogenase activity
Ajs_2980	COG1804	L-carnitine dehydratase bile acid-inducible protein F
Ajs_2991	COG0617	tRNA 3'-terminal CCA addition
Ajs_2993	COG0593	it binds specifically double-stranded DNA at a 9 bp consensus (dnaA box) 5'-TTATC CA A CA A-3'. DnaA binds to ATP and to acidic phospholipids
Ajs_2994	COG0150	phosphoribosylformylglycinamidine cyclo-ligase activity
Ajs_2996	COG0589	response to stress
Ajs_2999	COG0728	peptidoglycan biosynthetic process
Ajs_3000	COG0268	Binds directly to 16S ribosomal RNA
Ajs_3002	COG4992	N2-acetyl-L-ornithine:2-oxoglutarate 5-aminotransferase activity
Ajs_3003	COG0078	Reversibly catalyzes the transfer of the carbamoyl group from carbamoyl phosphate (CP) to the N(epsilon) atom of ornithine (ORN) to produce L-citrulline
Ajs_3012	COG0489	protein tyrosine kinase activity
Ajs_3014	COG0677	UDP-N-acetyl-D-mannosamine dehydrogenase activity
Ajs_3030	COG1195	it is required for DNA replication and normal SOS inducibility. RecF binds preferentially to single-stranded, linear DNA. It also seems to bind ATP
Ajs_3034	COG2148	undecaprenyl-phosphate glucose phosphotransferase activity
Ajs_3037	COG0399	UDP-4-amino-4-deoxy-L-arabinose aminotransferase
Ajs_3042	COG1739	Uncharacterized protein family UPF0029
Ajs_3048	COG0226	Part of the ABC transporter complex PstSACB involved in phosphate import
Ajs_3054	COG0394	Belongs to the low molecular weight phosphotyrosine protein phosphatase family
Ajs_3057	COG1132	(ABC) transporter
Ajs_3068	COG0456	acetyltransferase
Ajs_3070	COG1213	nucleotidyl transferase
Ajs_3072	COG2124	cytochrome p450
Ajs_3074	COG0318	PFAM AMP-dependent synthetase and ligase
Ajs_3075	COG0236	Carrier of the growing fatty acid chain in fatty acid biosynthesis
Ajs_3086	COG4584	PFAM Integrase catalytic
Ajs_3096	COG3039	Transposase
Ajs_3101	COG1129	ABC transporter
Ajs_3103	COG1529	Aldehyde oxidase and xanthine dehydrogenase
Ajs_3104	COG3447	MASE1 domain protein
Ajs_3104	COG5002	protein histidine kinase activity
Ajs_3104	COG5001	Diguanylate cyclase
Ajs_3107	COG5001	Diguanylate cyclase
Ajs_3107	COG3300	MHYT domain
Ajs_3108	COG0537	adenosine 5'-monophosphoramidase activity
Ajs_3109	COG1052	Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family
Ajs_3110	COG2814	Major facilitator Superfamily
Ajs_3111	COG0324	Catalyzes the transfer of a dimethylallyl group onto the adenine at position 37 in tRNAs that read codons beginning with uridine, leading to the formation of N6-(dimethylallyl)adenosine (i(6)A)
Ajs_3112	COG1136	(ABC) transporter
Ajs_3113	COG0071	Belongs to the small heat shock protein (HSP20) family
Ajs_3115	COG0031	Belongs to the cysteine synthase cystathionine beta- synthase family
Ajs_3126	COG4148	Part of the ABC transporter complex ModABC involved in molybdenum import. Responsible for energy coupling to the transport system
Ajs_3128	COG1122	ATPase activity
Ajs_3133	COG4663	Part of the tripartite ATP-independent periplasmic (TRAP) transport system
Ajs_3135	COG2814	Major facilitator Superfamily
Ajs_3136	COG0318	PFAM AMP-dependent synthetase and ligase
Ajs_3138	COG0568	sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released
Ajs_3139	COG1893	Catalyzes the NADPH-dependent reduction of ketopantoate into pantoic acid
Ajs_3142	COG1804	L-carnitine dehydratase bile acid-inducible protein F
Ajs_3143	COG0119	Catalyzes the condensation of the acetyl group of acetyl-CoA with 3-methyl-2-oxobutanoate (2-oxoisovalerate) to form 3-carboxy-3-hydroxy-4-methylpentanoate (2-isopropylmalate)
Ajs_3144	COG0583	DNA-binding transcription factor activity
Ajs_3147	COG0621	Catalyzes the methylthiolation of N6- (dimethylallyl)adenosine (i(6)A), leading to the formation of 2- methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine
Ajs_3148	COG5394	Polyhydroxyalkanoate synthesis repressor PhaR
Ajs_3149	COG0317	In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance
Ajs_3151	COG1028	Short-chain dehydrogenase reductase Sdr
Ajs_3153	COG0745	RESPONSE REGULATOR receiver
Ajs_3154	COG2205	protein histidine kinase activity
Ajs_3155	COG1211	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase activity
Ajs_3155	COG0245	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase activity
Ajs_3156	COG1211	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase activity
Ajs_3156	COG0245	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase activity
Ajs_3157	COG1197	Couples transcription and DNA repair by recognizing RNA polymerase (RNAP) stalled at DNA lesions. Mediates ATP-dependent release of RNAP and its truncated transcript from the DNA, and recruitment of nucleotide excision repair machinery to the damaged site
Ajs_3159	COG0560	Phosphoserine phosphatase
Ajs_3162	COG0583	DNA-binding transcription factor activity
Ajs_3163	COG1959	2 iron, 2 sulfur cluster binding
Ajs_3167	COG0667	Aldo Keto reductase
Ajs_3168	COG2900	Belongs to the SlyX family
Ajs_3169	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
Ajs_3170	COG0177	DNA repair enzyme that has both DNA N-glycosylase activity and AP-lyase activity. The DNA N-glycosylase activity releases various damaged pyrimidines from DNA by cleaving the N- glycosidic bond, leaving an AP (apurinic apyrimidinic) site. The AP-lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination, leaving a 3'-terminal unsaturated sugar and a product with a terminal 5'-phosphate
Ajs_3176	COG2038	nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase activity
Ajs_3177	COG0778	Nitroreductase
Ajs_3178	COG1492	cobalamin metabolic process
Ajs_3180	COG1270	Converts cobyric acid to cobinamide by the addition of aminopropanol on the F carboxylic group
Ajs_3190	COG0117	Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'-phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)- pyrimidinedione 5'-phosphate
Ajs_3190	COG1985	Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'-phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)- pyrimidinedione 5'-phosphate
Ajs_3191	COG1502	Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol
Ajs_3198	COG0542	response to heat
Ajs_3199	COG0314	molybdopterin synthase activity
Ajs_3203	COG0303	'Molybdopterin
Ajs_3204	COG1763	Mo-molybdopterin cofactor biosynthetic process
Ajs_3207	COG0436	Aminotransferase
Ajs_3209	COG1225	Alkyl hydroperoxide reductase Thiol specific antioxidant Mal allergen
Ajs_3210	COG1875	ATPase related to phosphate starvation-inducible protein PhoH
Ajs_3212	COG0305	Participates in initiation and elongation during chromosome replication
Ajs_3213	COG0359	binds to the 23S rRNA
Ajs_3214	COG0238	Binds as a heterodimer with protein S6 to the central domain of the 16S rRNA, where it helps stabilize the platform of the 30S subunit
Ajs_3215	COG2965	DNA replication, synthesis of RNA primer
Ajs_3216	COG0360	Binds together with S18 to 16S ribosomal RNA
Ajs_3217	COG0576	Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins, in association with DnaK and GrpE. It is the nucleotide exchange factor for DnaK and may function as a thermosensor. Unfolded proteins bind initially to DnaJ
Ajs_3218	COG0443	Heat shock 70 kDa protein
Ajs_3219	COG0484	heat shock protein binding
Ajs_3225	COG0043	3-octaprenyl-4-hydroxybenzoate carboxy-lyase activity
Ajs_3227	COG1236	Exonuclease of the beta-lactamase fold involved in RNA processing
Ajs_3229	COG0065	Catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate, via the formation of 2-isopropylmaleate
Ajs_3232	COG0066	3-isopropylmalate dehydratase activity
Ajs_3233	COG0473	3-isopropylmalate dehydrogenase activity
Ajs_3235	COG0136	Catalyzes the NADPH-dependent formation of L-aspartate- semialdehyde (L-ASA) by the reductive dephosphorylation of L- aspartyl-4-phosphate
Ajs_3237	COG0101	tRNA pseudouridine synthase activity
Ajs_3238	COG0135	phosphoribosylanthranilate isomerase activity
Ajs_3239	COG0133	tryptophan synthase activity
Ajs_3240	COG0159	tryptophan synthase activity
Ajs_3241	COG0777	Component of the acetyl coenzyme A carboxylase (ACC) complex. Biotin carboxylase (BC) catalyzes the carboxylation of biotin on its carrier protein (BCCP) and then the CO(2) group is transferred by the transcarboxylase to acetyl-CoA to form malonyl- CoA
Ajs_3242	COG0762	integral membrane protein
Ajs_3244	COG0438	transferase activity, transferring glycosyl groups
Ajs_3245	COG2148	undecaprenyl-phosphate glucose phosphotransferase activity
Ajs_3250	COG1190	Belongs to the class-II aminoacyl-tRNA synthetase family
Ajs_3251	COG0745	RESPONSE REGULATOR receiver
Ajs_3254	COG0559	Belongs to the binding-protein-dependent transport system permease family
Ajs_3259	COG2128	Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity
Ajs_3261	COG1472	Belongs to the glycosyl hydrolase 3 family
Ajs_3262	COG0736	holo-[acyl-carrier-protein] synthase activity
Ajs_3263	COG0854	Catalyzes the complicated ring closure reaction between the two acyclic compounds 1-deoxy-D-xylulose-5-phosphate (DXP) and 3-amino-2-oxopropyl phosphate (1-amino-acetone-3-phosphate or AAP) to form pyridoxine 5'-phosphate (PNP) and inorganic phosphate
Ajs_3264	COG3449	Inhibits the supercoiling activity of DNA gyrase. Acts by inhibiting DNA gyrase at an early step, prior to (or at the step of) binding of DNA by the gyrase. It protects cells against toxins that target DNA gyrase, by inhibiting activity of these toxins and reducing the formation of lethal double-strand breaks in the cell
Ajs_3265	COG1381	Involved in DNA repair and RecF pathway recombination
Ajs_3266	COG1159	An essential GTPase that binds both GDP and GTP, with rapid nucleotide exchange. Plays a role in 16S rRNA processing and 30S ribosomal subunit biogenesis and possibly also in cell cycle regulation and energy metabolism
Ajs_3267	COG0571	ribonuclease III activity
Ajs_3269	COG0681	Belongs to the peptidase S26 family
Ajs_3270	COG0481	GTPase activity
Ajs_3271	COG0265	Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain
Ajs_3276	COG0304	beta-ketoacyl-acyl-carrier-protein synthase II activity
Ajs_3277	COG0236	Carrier of the growing fatty acid chain in fatty acid biosynthesis
Ajs_3278	COG1028	Short-chain dehydrogenase reductase Sdr
Ajs_3279	COG0331	[acyl-carrier-protein] S-malonyltransferase activity
Ajs_3280	COG0332	Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. Catalyzes the first condensation reaction which initiates fatty acid synthesis and may therefore play a role in governing the total rate of fatty acid production. Possesses both acetoacetyl-ACP synthase and acetyl transacylase activities. Its substrate specificity determines the biosynthesis of branched- chain and or straight-chain of fatty acids
Ajs_3281	COG0416	fatty acid biosynthetic process
Ajs_3282	COG0333	Belongs to the bacterial ribosomal protein bL32 family
Ajs_3283	COG1399	metal-binding, possibly nucleic acid-binding protein
Ajs_3284	COG0424	maF-like protein
Ajs_3285	COG0313	Catalyzes the 2'-O-methylation of the ribose of cytidine 1402 (C1402) in 16S rRNA
Ajs_3286	COG3004	Na( ) H( ) antiporter that extrudes sodium in exchange for external protons
Ajs_3286	COG0616	signal peptide processing
Ajs_3290	COG1530	ribonuclease E activity
Ajs_3291	COG3022	response to hydroperoxide
Ajs_3294	COG0780	Catalyzes the NADPH-dependent reduction of 7-cyano-7- deazaguanine (preQ0) to 7-aminomethyl-7-deazaguanine (preQ1)
Ajs_3294	COG2904	Catalyzes the NADPH-dependent reduction of 7-cyano-7- deazaguanine (preQ0) to 7-aminomethyl-7-deazaguanine (preQ1)
Ajs_3295	COG0840	transmembrane signaling receptor activity
Ajs_3296	COG0389	Poorly processive, error-prone DNA polymerase involved in untargeted mutagenesis. Copies undamaged DNA at stalled replication forks, which arise in vivo from mismatched or misaligned primer ends. These misaligned primers can be extended by PolIV. Exhibits no 3'-5' exonuclease (proofreading) activity. May be involved in translesional synthesis, in conjunction with the beta clamp from PolIII
Ajs_3298	COG1304	FMN binding
Ajs_3304	COG0395	ABC-type sugar transport system, permease component
Ajs_3305	COG1175	transmembrane transport
Ajs_3307	COG3842	ATPase activity
Ajs_3308	COG1292	Belongs to the BCCT transporter (TC 2.A.15) family
Ajs_3310	COG0753	catalase activity
Ajs_3312	COG0165	Argininosuccinate lyase
Ajs_3313	COG3275	phosphorelay sensor kinase activity
Ajs_3316	COG0412	Dienelactone hydrolase
Ajs_3320	COG2334	A protein kinase that phosphorylates Ser and Thr residues. Probably acts to suppress the effects of stress linked to accumulation of reactive oxygen species. Probably involved in the extracytoplasmic stress response
Ajs_3322	COG3637	Has lipid A 3-O-deacylase activity. Hydrolyzes the ester bond at the 3 position of lipid A, a bioactive component of lipopolysaccharide (LPS), thereby releasing the primary fatty acyl moiety
Ajs_3322	COG2885	chlorophyll binding
Ajs_3324	COG0210	DNA helicase
Ajs_3326	COG0516	GMP reductase activity
Ajs_3340	COG0582	viral genome integration into host DNA
Ajs_3341	COG0664	- Catabolite gene activator and regulatory subunit of cAMP-dependent protein
Ajs_3344	COG2814	Major facilitator Superfamily
Ajs_3345	COG0513	Belongs to the DEAD box helicase family
Ajs_3346	COG1949	3'-to-5' exoribonuclease specific for small oligoribonucleotides
Ajs_3347	COG0501	Belongs to the peptidase M48B family
Ajs_3348	COG2154	pterin-4-alpha-carbinolamine dehydratase
Ajs_3349	COG1162	GTPase activity
Ajs_3350	COG1270	Converts cobyric acid to cobinamide by the addition of aminopropanol on the F carboxylic group
Ajs_3351	COG0494	nUDIX hydrolase
Ajs_3352	COG0335	large ribosomal subunit rRNA binding
Ajs_3353	COG0336	Belongs to the RNA methyltransferase TrmD family
Ajs_3354	COG0806	An accessory protein needed during the final step in the assembly of 30S ribosomal subunit, possibly for assembly of the head region. Probably interacts with S19. Essential for efficient processing of 16S rRNA. May be needed both before and after RbfA during the maturation of 16S rRNA. It has affinity for free ribosomal 30S subunits but not for 70S ribosomes
Ajs_3355	COG0228	four-way junction DNA binding
Ajs_3358	COG0306	phosphate transporter
Ajs_3359	COG1392	Phosphate transport regulator
Ajs_3362	COG0411	ABC transporter
Ajs_3364	COG0559	Belongs to the binding-protein-dependent transport system permease family
Ajs_3365	COG2256	atpase related to the helicase subunit of the holliday junction resolvase
Ajs_3367	COG3039	Transposase
Ajs_3380	COG1573	uracil-dna glycosylase
Ajs_3381	COG2834	Participates in the translocation of lipoproteins from the inner membrane to the outer membrane. Only forms a complex with a lipoprotein if the residue after the N-terminal Cys is not an aspartate (The Asp acts as a targeting signal to indicate that the lipoprotein should stay in the inner membrane)
Ajs_3382	COG1674	ftsk spoiiie
Ajs_3383	COG0492	ferredoxin-NADP+ reductase activity
Ajs_3384	COG0227	Belongs to the bacterial ribosomal protein bL28 family
Ajs_3385	COG0267	Belongs to the bacterial ribosomal protein bL33 family
Ajs_3387	COG0781	Involved in transcription antitermination. Required for transcription of ribosomal RNA (rRNA) genes. Binds specifically to the boxA antiterminator sequence of the ribosomal RNA (rrn) operons
Ajs_3387	COG0144	Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA
Ajs_3391	COG0299	Catalyzes the transfer of a formyl group from 10- formyltetrahydrofolate to 5-phospho-ribosyl-glycinamide (GAR), producing 5-phospho-ribosyl-N-formylglycinamide (FGAR) and tetrahydrofolate
Ajs_3392	COG3132	Protein of unknown function, DUF480
Ajs_3393	COG1960	acyl-CoA dehydrogenase activity
Ajs_3394	COG1960	acyl-CoA dehydrogenase activity
Ajs_3395	COG3039	Transposase
Ajs_3396	COG2227	3-demethylubiquinone-9 3-O-methyltransferase activity
Ajs_3398	COG0196	riboflavin kinase activity
Ajs_3400	COG0597	This protein specifically catalyzes the removal of signal peptides from prolipoproteins
Ajs_3401	COG1283	sodium-dependent phosphate transmembrane transporter activity
Ajs_3406	COG0697	spore germination
Ajs_3413	COG2804	Type II secretory pathway, ATPase PulE Tfp pilus assembly pathway, ATPase PilB
Ajs_3414	COG0421	Catalyzes the irreversible transfer of a propylamine group from the amino donor S-adenosylmethioninamine (decarboxy- AdoMet) to putrescine (1,4-diaminobutane) to yield spermidine
Ajs_3416	COG0084	hydrolase, TatD family'
Ajs_3418	COG0640	Transcriptional regulator
Ajs_3420	COG1136	(ABC) transporter
Ajs_3421	COG4591	ABC-type transport system involved in lipoprotein release permease component
Ajs_3422	COG0584	glycerophosphoryl diester phosphodiesterase
Ajs_3424	COG0608	single-stranded DNA 5'-3' exodeoxyribonuclease activity
Ajs_3426	COG3039	Transposase
Ajs_3430	COG0840	transmembrane signaling receptor activity
Ajs_3431	COG0613	PHP domain protein
Ajs_3432	COG0009	L-threonylcarbamoyladenylate synthase
Ajs_3434	COG0714	Associated with various cellular activities
Ajs_3435	COG3256	nitric oxide reductase
Ajs_3436	COG2010	Cytochrome c
Ajs_3437	COG1994	Peptidase M50
Ajs_3438	COG0180	Tryptophanyl-tRNA synthetase
Ajs_3442	COG5001	Diguanylate cyclase
Ajs_3442	COG3300	MHYT domain
Ajs_3445	COG0172	Catalyzes the attachment of serine to tRNA(Ser). Is also able to aminoacylate tRNA(Sec) with serine, to form the misacylated tRNA L-seryl-tRNA(Sec), which will be further converted into selenocysteinyl-tRNA(Sec)
Ajs_3447	COG1253	flavin adenine dinucleotide binding
Ajs_3448	COG0761	Catalyzes the conversion of 1-hydroxy-2-methyl-2-(E)- butenyl 4-diphosphate (HMBPP) into a mixture of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). Acts in the terminal step of the DOXP MEP pathway for isoprenoid precursor biosynthesis
Ajs_3449	COG1047	Peptidyl-prolyl cis-trans
Ajs_3450	COG2003	Belongs to the UPF0758 family
Ajs_3452	COG1193	negative regulation of DNA recombination
Ajs_3458	COG3127	ABC-type transport system involved in lysophospholipase L1, biosynthesis, permease component
Ajs_3459	COG1526	Required for formate dehydrogenase (FDH) activity. Acts as a sulfur carrier protein that transfers sulfur from IscS to the molybdenum cofactor prior to its insertion into FDH
Ajs_3463	COG0437	4 iron, 4 sulfur cluster binding
Ajs_3464	COG3383	formate dehydrogenase (NAD+) activity
Ajs_3464	COG0243	molybdopterin cofactor binding
Ajs_3470	COG3383	formate dehydrogenase (NAD+) activity
Ajs_3476	COG0489	protein tyrosine kinase activity
Ajs_3480	COG2603	Catalyzes the transfer of selenium from selenophosphate for conversion of 2-thiouridine to 2-selenouridine at the wobble position in tRNA
Ajs_3483	COG0073	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
Ajs_3483	COG0143	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
Ajs_3487	COG1304	FMN binding
Ajs_3488	COG0028	Belongs to the TPP enzyme family
Ajs_3493	COG0029	Catalyzes the oxidation of L-aspartate to iminoaspartate
Ajs_3494	COG0853	Catalyzes the pyruvoyl-dependent decarboxylation of aspartate to produce beta-alanine
Ajs_3497	COG0379	Catalyzes the condensation of iminoaspartate with dihydroxyacetone phosphate to form quinolinate
Ajs_3499	COG0413	3-methyl-2-oxobutanoate hydroxymethyltransferase activity
Ajs_3500	COG0414	Catalyzes the condensation of pantoate with beta-alanine in an ATP-dependent reaction via a pantoyl-adenylate intermediate
Ajs_3501	COG0240	glycerol-3-phosphate dehydrogenase [NAD(P)+] activity
Ajs_3502	COG1952	One of the proteins required for the normal export of preproteins out of the cell cytoplasm. It is a molecular chaperone that binds to a subset of precursor proteins, maintaining them in a translocation-competent state. It also specifically binds to its receptor SecA
Ajs_3504	COG0607	Catalyzes the ATP-dependent transfer of a sulfur to tRNA to produce 4-thiouridine in position 8 of tRNAs, which functions as a near-UV photosensor. Also catalyzes the transfer of sulfur to the sulfur carrier protein ThiS, forming ThiS-thiocarboxylate. This is a step in the synthesis of thiazole, in the thiamine biosynthesis pathway. The sulfur is donated as persulfide by IscS
Ajs_3505	COG0588	phosphoglycerate mutase activity
Ajs_3506	COG0793	Belongs to the peptidase S41A family
Ajs_3507	COG0476	Involved in molybdopterin and thiamine biosynthesis, family 2
Ajs_3509	COG2197	response regulator
Ajs_3511	COG5487	UPF0391 membrane protein
Ajs_3516	COG0669	Reversibly transfers an adenylyl group from ATP to 4'- phosphopantetheine, yielding dephospho-CoA (dPCoA) and pyrophosphate
Ajs_3517	COG0742	ribosomal rna small subunit methyltransferase
Ajs_3518	COG0612	Peptidase, M16
Ajs_3519	COG0612	Peptidase, M16
Ajs_3522	COG0568	sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released
Ajs_3523	COG3181	Tripartite tricarboxylate transporter family receptor
Ajs_3526	COG1999	signal sequence binding
Ajs_3527	COG0109	protoheme IX farnesyltransferase activity
Ajs_3534	COG3175	Exerts its effect at some terminal stage of cytochrome c oxidase synthesis, probably by being involved in the insertion of the copper B into subunit I
Ajs_3536	COG0843	Cytochrome c oxidase is the component of the respiratory chain that catalyzes the reduction of oxygen to water. Subunits 1- 3 form the functional core of the enzyme complex. CO I is the catalytic subunit of the enzyme. Electrons originating in cytochrome c are transferred via the copper A center of subunit 2 and heme A of subunit 1 to the bimetallic center formed by heme A3 and copper B
Ajs_3539	COG2226	methyltransferase
Ajs_3540	COG1040	competence protein
Ajs_3541	COG0219	Methylates the ribose at the nucleotide 34 wobble position in the two leucyl isoacceptors tRNA(Leu)(CmAA) and tRNA(Leu)(cmnm5UmAA). Catalyzes the methyl transfer from S- adenosyl-L-methionine to the 2'-OH of the wobble nucleotide
Ajs_3543	COG1192	Involved in chromosome partitioning
Ajs_3544	COG1280	lysine exporter protein (LysE YggA)
Ajs_3545	COG1226	(belongs to the monovalent cation proton antiporter 2 (CPA2) transporter (TC 2.A.37) family)
Ajs_3545	COG0475	glutathione-regulated potassium exporter activity
Ajs_3547	COG2021	Transfers an acetyl group from acetyl-CoA to L- homoserine, forming acetyl-L-homoserine
Ajs_3548	COG0183	Belongs to the thiolase family
Ajs_3549	COG2057	Acyl CoA acetate 3-ketoacid CoA transferase beta subunit
Ajs_3551	COG1414	Transcriptional regulator
Ajs_3556	COG0465	Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins
Ajs_3565	COG1178	ABC-type Fe3 transport system permease component
Ajs_3566	COG3842	ATPase activity
Ajs_3570	COG0540	Belongs to the ATCase OTCase family
Ajs_3571	COG2065	Also displays a weak uracil phosphoribosyltransferase activity which is not physiologically significant
Ajs_3572	COG0816	Could be a nuclease involved in processing of the 5'-end of pre-16S rRNA
Ajs_3573	COG1678	Uncharacterized ACR, COG1678
Ajs_3574	COG0643	Histidine kinase
Ajs_3574	COG2198	Histidine kinase
Ajs_3575	COG0840	transmembrane signaling receptor activity
Ajs_3579	COG1773	rubredoxin
Ajs_3581	COG0001	glutamate-1-semialdehyde 2,1-aminomutase activity
Ajs_3583	COG4654	Cytochrome c, class I
Ajs_3584	COG0138	bifunctional purine biosynthesis protein purh
Ajs_3585	COG2901	Activates ribosomal RNA transcription. Plays a direct role in upstream activation of rRNA promoters
Ajs_3586	COG0042	Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines
Ajs_3587	COG1238	metal cluster binding
Ajs_3593	COG1484	DNA-dependent DNA replication
Ajs_3594	COG4584	PFAM Integrase catalytic
Ajs_3598	COG0466	ATP-dependent serine protease that mediates the selective degradation of mutant and abnormal proteins as well as certain short-lived regulatory proteins. Required for cellular homeostasis and for survival from DNA damage and developmental changes induced by stress. Degrades polypeptides processively to yield small peptide fragments that are 5 to 10 amino acids long. Binds to DNA in a double-stranded, site-specific manner
Ajs_3605	COG1196	nuclear chromosome segregation
Ajs_3606	COG0610	Subunit R is required for both nuclease and ATPase activities, but not for modification
Ajs_3610	COG0286	site-specific DNA-methyltransferase (adenine-specific) activity
Ajs_3617	COG0582	viral genome integration into host DNA
Ajs_3618	COG0012	GTP binding
Ajs_3619	COG0633	Ferredoxin
Ajs_3619	COG3217	Mosc domain protein beta barrel domain protein
Ajs_3620	COG0654	COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases
Ajs_3621	COG1651	Required for disulfide bond formation in some periplasmic proteins. Acts by transferring its disulfide bond to other proteins and is reduced in the process
Ajs_3623	COG1024	Enoyl-CoA hydratase
Ajs_3625	COG0621	Catalyzes the methylthiolation of N6- (dimethylallyl)adenosine (i(6)A), leading to the formation of 2- methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine
Ajs_3626	COG0541	Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Binds to the hydrophobic signal sequence of the ribosome-nascent chain (RNC) as it emerges from the ribosomes. The SRP-RNC complex is then targeted to the cytoplasmic membrane where it interacts with the SRP receptor FtsY
Ajs_3627	COG0755	Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes
Ajs_3632	COG1327	Negatively regulates transcription of bacterial ribonucleotide reductase nrd genes and operons by binding to NrdR- boxes
Ajs_3632	COG0209	Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides
Ajs_3633	COG0208	Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides
Ajs_3637	COG2264	protein methyltransferase activity
Ajs_3638	COG0439	Biotin carboxylase
Ajs_3639	COG0511	ligase activity, forming carbon-carbon bonds
Ajs_3640	COG0526	COG0526, thiol-disulfide isomerase and thioredoxins
Ajs_3642	COG0773	UDP-N-acetylmuramate-L-alanine ligase activity
Ajs_3644	COG0722	Stereospecific condensation of phosphoenolpyruvate (PEP) and D-erythrose-4-phosphate (E4P) giving rise to 3-deoxy-D- arabino-heptulosonate-7-phosphate (DAHP)
Ajs_3646	COG0312	modulator of DNA gyrase
Ajs_3647	COG0772	Belongs to the SEDS family
Ajs_3649	COG3150	esterase
Ajs_3651	COG3474	cytochrome
Ajs_3654	COG0557	exoribonuclease II activity
Ajs_3656	COG0169	Involved in the biosynthesis of the chorismate, which leads to the biosynthesis of aromatic amino acids. Catalyzes the reversible NADPH linked reduction of 3-dehydroshikimate (DHSA) to yield shikimate (SA)
Ajs_3657	COG0744	Peptidoglycan polymerase that catalyzes glycan chain elongation from lipid-linked precursors
Ajs_3658	COG0817	Nuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves the cruciform structure in supercoiled DNA by nicking to strands with the same polarity at sites symmetrically opposed at the junction in the homologous arms and leaves a 5'-terminal phosphate and a 3'-terminal hydroxyl group
Ajs_3659	COG0840	transmembrane signaling receptor activity
Ajs_3660	COG0840	transmembrane signaling receptor activity
Ajs_3661	COG0422	Catalyzes the synthesis of the hydroxymethylpyrimidine phosphate (HMP-P) moiety of thiamine from aminoimidazole ribotide (AIR) in a radical S-adenosyl-L-methionine (SAM)-dependent reaction
Ajs_3663	COG0774	UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase activity
Ajs_3664	COG0840	transmembrane signaling receptor activity
Ajs_3667	COG1589	Essential cell division protein. May link together the upstream cell division proteins, which are predominantly cytoplasmic, with the downstream cell division proteins, which are predominantly periplasmic. May control correct divisome assembly
Ajs_3668	COG1181	Belongs to the D-alanine--D-alanine ligase family
Ajs_3669	COG0773	UDP-N-acetylmuramate-L-alanine ligase activity
Ajs_3670	COG0707	Cell wall formation. Catalyzes the transfer of a GlcNAc subunit on undecaprenyl-pyrophosphoryl-MurNAc-pentapeptide (lipid intermediate I) to form undecaprenyl-pyrophosphoryl-MurNAc- (pentapeptide)GlcNAc (lipid intermediate II)
Ajs_3671	COG0772	Belongs to the SEDS family
Ajs_3672	COG0771	Cell wall formation. Catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine (UMA)
Ajs_3673	COG0472	First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan
Ajs_3674	COG0770	UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase activity
Ajs_3675	COG0769	Catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanyl-D-glutamate (UMAG) in the biosynthesis of bacterial cell-wall peptidoglycan
Ajs_3677	COG3116	cell division
Ajs_3678	COG0275	rRNA processing
Ajs_3679	COG2001	Belongs to the MraZ family
Ajs_3680	COG1220	this subunit has chaperone activity. The binding of ATP and its subsequent hydrolysis by HslU are essential for unfolding of protein substrates subsequently hydrolyzed by HslV. HslU recognizes the N-terminal part of its protein substrates and unfolds these before they are guided to HslV for hydrolysis
Ajs_3681	COG5405	Protease subunit of a proteasome-like degradation complex believed to be a general protein degrading machinery
Ajs_3683	COG1734	Transcription factor that acts by binding directly to the RNA polymerase (RNAP). Required for negative regulation of rRNA expression and positive regulation of several amino acid biosynthesis promoters
Ajs_3684	COG0523	cobalamin synthesis protein
Ajs_3686	COG4973	Belongs to the 'phage' integrase family. XerC subfamily
Ajs_3688	COG0253	Catalyzes the stereoinversion of LL-2,6- diaminoheptanedioate (L,L-DAP) to meso-diaminoheptanedioate (meso- DAP), a precursor of L-lysine and an essential component of the bacterial peptidoglycan
Ajs_3691	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
Ajs_3694	COG2255	four-way junction helicase activity
Ajs_3696	COG0443	Heat shock 70 kDa protein
Ajs_3697	COG2249	NAD(P)H dehydrogenase (quinone) activity
Ajs_3698	COG0443	Heat shock 70 kDa protein
Ajs_3700	COG0632	four-way junction helicase activity
Ajs_3701	COG1702	phosphate starvation-inducible protein PhoH
Ajs_3702	COG0319	Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA
Ajs_3704	COG0730	response to heat
Ajs_3705	COG0513	Belongs to the DEAD box helicase family
Ajs_3706	COG1490	D-aminoacyl-tRNA deacylase activity
Ajs_3707	COG0053	Belongs to the cation diffusion facilitator (CDF) transporter (TC 2.A.4) family
Ajs_3709	COG0775	Catalyzes the irreversible cleavage of the glycosidic bond in both 5'-methylthioadenosine (MTA) and S- adenosylhomocysteine (SAH AdoHcy) to adenine and the corresponding thioribose, 5'-methylthioribose and S-ribosylhomocysteine, respectively
Ajs_3711	COG1131	(ABC) transporter
Ajs_3712	COG0842	Transport permease protein
Ajs_3718	COG1250	3-hydroxyacyl-CoA dehydrogenase
Ajs_3724	COG3568	Endonuclease Exonuclease Phosphatase
Ajs_3725	COG1502	Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol
Ajs_3727	COG2509	5-formyltetrahydrofolate cyclo-ligase activity
Ajs_3728	COG2860	membrane
Ajs_3734	COG1804	L-carnitine dehydratase bile acid-inducible protein F
Ajs_3735	COG1024	Enoyl-CoA hydratase
Ajs_3736	COG1960	acyl-CoA dehydrogenase activity
Ajs_3737	COG1960	acyl-CoA dehydrogenase activity
Ajs_3738	COG0183	Belongs to the thiolase family
Ajs_3739	COG1024	Enoyl-CoA hydratase
Ajs_3739	COG1250	3-hydroxyacyl-CoA dehydrogenase
Ajs_3740	COG0583	DNA-binding transcription factor activity
Ajs_3742	COG0501	Belongs to the peptidase M48B family
Ajs_3745	COG0418	dihydroorotase activity
Ajs_3747	COG0178	The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 uvrA and 2 uvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by uvrB, the uvrA molecules dissociate
Ajs_3748	COG0683	leucine binding
Ajs_3749	COG0683	leucine binding
Ajs_3752	COG0477	Major facilitator Superfamily
Ajs_3758	COG0111	D-isomer specific 2-hydroxyacid dehydrogenase
Ajs_3761	COG1024	Enoyl-CoA hydratase
Ajs_3762	COG2318	DinB family
Ajs_3763	COG4799	Acetyl-CoA carboxylase, carboxyltransferase component subunits alpha and beta
Ajs_3764	COG0318	PFAM AMP-dependent synthetase and ligase
Ajs_3766	COG3039	Transposase
Ajs_3769	COG0318	PFAM AMP-dependent synthetase and ligase
Ajs_3771	COG3012	SEC-C Motif Domain Protein
Ajs_3772	COG0840	transmembrane signaling receptor activity
Ajs_3773	COG0637	HAD-superfamily hydrolase subfamily IA, variant 3
Ajs_3774	COG1960	acyl-CoA dehydrogenase activity
Ajs_3775	COG0300	oxidoreductase activity
Ajs_3776	COG0183	Belongs to the thiolase family
Ajs_3777	COG4579	[isocitrate dehydrogenase (NADP+)] phosphatase activity
Ajs_3778	COG0288	reversible hydration of carbon dioxide
Ajs_3779	COG1960	acyl-CoA dehydrogenase activity
Ajs_3780	COG0789	Transcriptional regulator
Ajs_3782	COG3328	transposase activity
Ajs_3786	COG2201	protein-glutamate methylesterase activity
Ajs_3787	COG1871	Probably deamidates glutamine residues to glutamate on methyl-accepting chemotaxis receptors (MCPs), playing an important role in chemotaxis
Ajs_3789	COG0835	chemotaxis
Ajs_3790	COG0643	Histidine kinase
Ajs_3790	COG2198	Histidine kinase
Ajs_3791	COG2201	protein-glutamate methylesterase activity
Ajs_3794	COG2197	response regulator
Ajs_3796	COG1987	bacterial-type flagellum assembly
Ajs_3797	COG1338	Plays a role in the flagellum-specific transport system
Ajs_3799	COG1886	FliN is one of three proteins (FliG, FliN, FliM) that form the rotor-mounted switch complex (C ring), located at the base of the basal body. This complex interacts with the CheY and CheZ chemotaxis proteins, in addition to contacting components of the motor that determine the direction of flagellar rotation
Ajs_3807	COG1766	The M ring may be actively involved in energy transduction
Ajs_3808	COG1677	Flagellar hook-basal body complex protein FliE
Ajs_3812	COG1344	Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella
Ajs_3813	COG1344	Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella
Ajs_3814	COG1344	Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella
Ajs_3817	COG0745	RESPONSE REGULATOR receiver
Ajs_3818	COG3143	Plays an important role in bacterial chemotaxis signal transduction pathway by accelerating the dephosphorylation of phosphorylated CheY (CheY-P)
Ajs_3820	COG1298	Required for formation of the rod structure of the flagellar apparatus. Together with FliI and FliH, may constitute the export apparatus of flagellin
Ajs_3823	COG1191	sigma factor activity
Ajs_3827	COG1815	bacterial-type flagellum-dependent cell motility
Ajs_3828	COG1558	bacterial-type flagellum-dependent cell motility
Ajs_3829	COG1843	Required for flagellar hook formation. May act as a scaffolding protein
Ajs_3830	COG1749	Flagellar hook protein flgE
Ajs_3832	COG4786	Flagellar basal body rod
Ajs_3835	COG1706	bacterial-type flagellum-dependent cell motility
Ajs_3836	COG3951	Flagellar rod assembly protein muramidase FlgJ
Ajs_3836	COG1705	Flagellar rod assembly protein muramidase FlgJ
Ajs_3838	COG1344	Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella
Ajs_3840	COG0733	neurotransmitter:sodium symporter activity
Ajs_3841	COG2070	2-Nitropropane dioxygenase
Ajs_3842	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
Ajs_3844	COG0697	spore germination
Ajs_3845	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
Ajs_3846	COG0384	phenazine biosynthesis protein PhzF
Ajs_3847	COG1171	Catalyzes the anaerobic formation of alpha-ketobutyrate and ammonia from threonine in a two-step reaction. The first step involved a dehydration of threonine and a production of enamine intermediates (aminocrotonate), which tautomerizes to its imine form (iminobutyrate). Both intermediates are unstable and short- lived. The second step is the nonenzymatic hydrolysis of the enamine imine intermediates to form 2-ketobutyrate and free ammonia. In the low water environment of the cell, the second step is accelerated by RidA
Ajs_3853	COG0013	Catalyzes the attachment of alanine to tRNA(Ala) in a two-step reaction alanine is first activated by ATP to form Ala- AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain
Ajs_3854	COG4232	protein-disulfide reductase activity
Ajs_3856	COG3004	Na( ) H( ) antiporter that extrudes sodium in exchange for external protons
Ajs_3857	COG1832	CoA-binding protein
Ajs_3859	COG0861	Integral membrane protein TerC family
Ajs_3860	COG0583	DNA-binding transcription factor activity
Ajs_3861	COG0407	Catalyzes the decarboxylation of four acetate groups of uroporphyrinogen-III to yield coproporphyrinogen-III
Ajs_3862	COG1198	Involved in the restart of stalled replication forks. Recognizes and binds the arrested nascent DNA chain at stalled replication forks. It can open the DNA duplex, via its helicase activity, and promote assembly of the primosome and loading of the major replicative helicase DnaB onto DNA
Ajs_3864	COG0679	Auxin Efflux Carrier
Ajs_3865	COG0210	DNA helicase
Ajs_3869	COG0589	response to stress
Ajs_3870	COG0343	queuine tRNA-ribosyltransferase activity
Ajs_3876	COG1522	sequence-specific DNA binding
Ajs_3877	COG2515	1-aminocyclopropane-1-carboxylate deaminase
Ajs_3878	COG0204	Acyl-transferase
Ajs_3878	COG0318	PFAM AMP-dependent synthetase and ligase
Ajs_3883	COG3181	Tripartite tricarboxylate transporter family receptor
Ajs_3884	COG2072	flavoprotein involved in K transport
Ajs_3886	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
Ajs_3890	COG2365	Tyrosine phosphatase family
Ajs_3891	COG2204	response regulator
Ajs_3892	COG5000	phosphorelay sensor kinase activity
Ajs_3894	COG0144	Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA
Ajs_3894	COG0781	Involved in transcription antitermination. Required for transcription of ribosomal RNA (rRNA) genes. Binds specifically to the boxA antiterminator sequence of the ribosomal RNA (rrn) operons
Ajs_3896	COG0086	DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates
Ajs_3897	COG0085	RNA polymerase activity
Ajs_3898	COG0222	ribosome binding
Ajs_3899	COG0244	Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors
Ajs_3900	COG0081	regulation of translation
Ajs_3901	COG0080	Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors
Ajs_3903	COG0690	P-P-bond-hydrolysis-driven protein transmembrane transporter activity
Ajs_3904	COG0050	This protein promotes the GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis
Ajs_3907	COG0189	ligase activity
Ajs_3908	COG3135	benzoate transporter
Ajs_3909	COG3158	transport of potassium into the cell
Ajs_3911	COG0168	Low-affinity potassium transport system. Interacts with trk system potassium uptake protein TrkA
Ajs_3912	COG0569	domain protein
Ajs_3913	COG0014	Catalyzes the NADPH-dependent reduction of L-glutamate 5-phosphate into L-glutamate 5-semialdehyde and phosphate. The product spontaneously undergoes cyclization to form 1-pyrroline-5- carboxylate
Ajs_3917	COG0495	leucyl-tRNA aminoacylation
Ajs_3919	COG0668	transmembrane transport
Ajs_3923	COG2913	Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane
Ajs_3924	COG0735	belongs to the Fur family
Ajs_3925	COG1493	Catalyzes the ATP- as well as the pyrophosphate- dependent phosphorylation of a specific serine residue in HPr, a phosphocarrier protein of the phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS). HprK P also catalyzes the pyrophosphate-producing, inorganic phosphate-dependent dephosphorylation (phosphorolysis) of seryl-phosphorylated HPr (P- Ser-HPr). The two antagonistic activities of HprK P are regulated by several intracellular metabolites, which change their concentration in response to the absence or presence of rapidly metabolisable carbon sources (glucose, fructose, etc.) in the growth medium. Therefore, by controlling the phosphorylation state of HPr, HPrK P is a sensor enzyme that plays a major role in the regulation of carbon metabolism and sugar transport it mediates carbon catabolite repression (CCR), and regulates PTS-catalyzed carbohydrate uptake and inducer exclusion
Ajs_3927	COG1544	Required for dimerization of active 70S ribosomes into 100S ribosomes in stationary phase
Ajs_3928	COG0152	phosphoribosylaminoimidazolesuccinocarboxamide synthase activity
Ajs_3931	COG3118	belongs to the thioredoxin family
Ajs_3932	COG0693	protein deglycase activity
Ajs_3935	COG0026	Catalyzes the ATP-dependent conversion of 5- aminoimidazole ribonucleotide (AIR) and HCO(3)(-) to N5- carboxyaminoimidazole ribonucleotide (N5-CAIR)
Ajs_3936	COG0009	L-threonylcarbamoyladenylate synthase
Ajs_3939	COG2027	D-alanyl-D-alanine carboxypeptidase
Ajs_3943	COG1142	4fe-4S ferredoxin, iron-sulfur binding domain protein
Ajs_3944	COG2414	aldehyde ferredoxin oxidoreductase
Ajs_3948	COG0598	Magnesium transport protein CorA
Ajs_3949	COG0775	Catalyzes the irreversible cleavage of the glycosidic bond in both 5'-methylthioadenosine (MTA) and S- adenosylhomocysteine (SAH AdoHcy) to adenine and the corresponding thioribose, 5'-methylthioribose and S-ribosylhomocysteine, respectively
Ajs_3950	COG0318	PFAM AMP-dependent synthetase and ligase
Ajs_3951	COG1282	The transhydrogenation between NADH and NADP is coupled to respiration and ATP hydrolysis and functions as a proton pump across the membrane
Ajs_3952	COG3288	NAD(P)+ transhydrogenase (AB-specific) activity
Ajs_3954	COG3288	NAD(P)+ transhydrogenase (AB-specific) activity
Ajs_3956	COG0469	pyruvate kinase activity
Ajs_3957	COG0006	proline dipeptidase activity
Ajs_3959	COG0021	Catalyzes the transfer of a two-carbon ketol group from a ketose donor to an aldose acceptor, via a covalent intermediate with the cofactor thiamine pyrophosphate
Ajs_3960	COG0057	glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity
Ajs_3963	COG2071	gamma-glutamyl-gamma-aminobutyrate hydrolase activity
Ajs_3964	COG1047	Peptidyl-prolyl cis-trans
Ajs_3968	COG1028	Short-chain dehydrogenase reductase Sdr
Ajs_3976	COG0625	glutathione transferase activity
Ajs_3996	COG3181	Tripartite tricarboxylate transporter family receptor
Ajs_3997	COG0583	DNA-binding transcription factor activity
Ajs_3998	COG0642	Histidine kinase
Ajs_4001	COG0468	Can catalyze the hydrolysis of ATP in the presence of single-stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage
Ajs_4002	COG2137	regulation of response to DNA damage stimulus
Ajs_4004	COG0341	Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA
Ajs_4005	COG0342	Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA
Ajs_4006	COG1862	Preprotein translocase
Ajs_4007	COG0668	transmembrane transport
Ajs_4009	COG1522	sequence-specific DNA binding
Ajs_4012	COG2814	Major facilitator Superfamily
Ajs_4013	COG2821	murein-degrading enzyme. may play a role in recycling of muropeptides during cell elongation and or cell division
Ajs_4015	COG4566	intracellular signal transduction
Ajs_4017	COG0388	Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source
Ajs_4019	COG1391	[glutamine synthetase]-adenylyl-L-tyrosine phosphorylase
Ajs_4022	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
Ajs_4025	COG0625	glutathione transferase activity
Ajs_4027	COG4681	YaeQ
Ajs_4030	COG0861	Integral membrane protein TerC family
Ajs_4032	COG1950	PFAM Membrane protein of
Ajs_4033	COG4783	chaperone-mediated protein folding
Ajs_4034	COG0315	cyclic pyranopterin monophosphate synthase activity
Ajs_4035	COG1708	protein C-terminal S-isoprenylcysteine carboxyl O-methyltransferase activity
Ajs_4038	COG0315	cyclic pyranopterin monophosphate synthase activity
Ajs_4040	COG4969	Belongs to the N-Me-Phe pilin family
Ajs_4043	COG1716	ATPase activity
Ajs_4045	COG0861	Integral membrane protein TerC family
Ajs_4046	COG0074	Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The alpha subunit of the enzyme binds the substrates coenzyme A and phosphate, while succinate binding and nucleotide specificity is provided by the beta subunit
Ajs_4047	COG0045	succinate-CoA ligase (ADP-forming) activity
Ajs_4048	COG0002	Catalyzes the NADPH-dependent reduction of N-acetyl-5- glutamyl phosphate to yield N-acetyl-L-glutamate 5-semialdehyde
Ajs_4049	COG0758	DNA mediated transformation
Ajs_4051	COG0242	peptide deformylase activity
Ajs_4053	COG0223	Attaches a formyl group to the free amino group of methionyl-tRNA(fMet). The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and preventing the misappropriation of this tRNA by the elongation apparatus
Ajs_4056	COG0126	phosphoglycerate kinase activity
Ajs_4058	COG0284	orotidine-5'-phosphate decarboxylase activity
Ajs_4062	COG0840	transmembrane signaling receptor activity
Ajs_4063	COG0591	Belongs to the sodium solute symporter (SSF) (TC 2.A.21) family
Ajs_4065	COG2814	Major facilitator Superfamily
Ajs_4066	COG0629	single-stranded DNA binding
Ajs_4067	COG1620	l-lactate permease
Ajs_4068	COG0482	sulfurtransferase activity
Ajs_4070	COG1053	succinate dehydrogenase
Ajs_4080	COG1195	it is required for DNA replication and normal SOS inducibility. RecF binds preferentially to single-stranded, linear DNA. It also seems to bind ATP
Ajs_4081	COG2189	Belongs to the N(4) N(6)-methyltransferase family
Ajs_4083	COG0745	RESPONSE REGULATOR receiver
Ajs_4089	COG1477	protein flavinylation
Ajs_4094	COG4262	Catalyzes the irreversible transfer of a propylamine group from the amino donor S-adenosylmethioninamine (decarboxy- AdoMet) to putrescine (1,4-diaminobutane) to yield spermidine
Ajs_4096	COG2189	Belongs to the N(4) N(6)-methyltransferase family
Ajs_4110	COG0030	16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase activity
Ajs_4111	COG0760	Chaperone involved in the correct folding and assembly of outer membrane proteins. Recognizes specific patterns of aromatic residues and the orientation of their side chains, which are found more frequently in integral outer membrane proteins. May act in both early periplasmic and late outer membrane-associated steps of protein maturation
Ajs_4112	COG1452	involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane
Ajs_4114	COG1385	rRNA (uridine-N3-)-methyltransferase activity
Ajs_4117	COG1196	nuclear chromosome segregation
Ajs_4119	COG3706	GGDEF domain
Ajs_4120	COG2267	carboxylic ester hydrolase activity
Ajs_4122	COG3706	GGDEF domain
Ajs_4123	COG0840	transmembrane signaling receptor activity
Ajs_4124	COG2227	3-demethylubiquinone-9 3-O-methyltransferase activity
Ajs_4125	COG2021	Transfers an acetyl group from acetyl-CoA to L- homoserine, forming acetyl-L-homoserine
Ajs_4126	COG2119	membrane
Ajs_4127	COG0724	RNA recognition motif
Ajs_4128	COG0724	RNA recognition motif
Ajs_4129	COG0300	oxidoreductase activity
Ajs_4131	COG1778	Involved in the biosynthesis of lipopolysaccharides (LPSs). Catalyzes the hydrolysis of 3-deoxy-D-manno-octulosonate 8-phosphate (KDO 8-P) to 3-deoxy-D-manno-octulosonate (KDO) and inorganic phosphate
Ajs_4134	COG0503	Catalyzes a salvage reaction resulting in the formation of AMP, that is energically less costly than de novo synthesis
Ajs_4138	COG0486	Exhibits a very high intrinsic GTPase hydrolysis rate. Involved in the addition of a carboxymethylaminomethyl (cmnm) group at the wobble position (U34) of certain tRNAs, forming tRNA- cmnm(5)s(2)U34
Ajs_4139	COG0747	negative chemotaxis
Ajs_4140	COG0706	membrane insertase activity
Ajs_4141	COG0759	Could be involved in insertion of integral membrane proteins into the membrane
Ajs_4142	COG0594	ribonuclease P activity
Ajs_4143	COG0230	Belongs to the bacterial ribosomal protein bL34 family
Ajs_4144	COG0593	it binds specifically double-stranded DNA at a 9 bp consensus (dnaA box) 5'-TTATC CA A CA A-3'. DnaA binds to ATP and to acidic phospholipids
Ajs_4148	COG0456	acetyltransferase
Ajs_4150	COG1764	response to oxidative stress
Ajs_4152	COG1254	Belongs to the acylphosphatase family
Ajs_4158	COG1199	ATP-dependent helicase activity
Ajs_4180	COG1651	Required for disulfide bond formation in some periplasmic proteins. Acts by transferring its disulfide bond to other proteins and is reduced in the process
Ajs_4188	COG2197	response regulator
Ajs_4189	COG3850	Histidine kinase
Ajs_4198	COG1961	COG1961 Site-specific recombinases, DNA invertase Pin homologs
Ajs_4202	COG2003	Belongs to the UPF0758 family
Ajs_4211	COG0629	single-stranded DNA binding
Ajs_4221	COG3657	addiction module killer protein
Ajs_4230	COG1896	Catalyzes the strictly specific dephosphorylation of 2'- deoxyribonucleoside 5'-monophosphates
Ajs_4249	COG1961	COG1961 Site-specific recombinases, DNA invertase Pin homologs
Ajs_4250	COG3041	Addiction module toxin RelE StbE family
Ajs_4271	COG3451	type IV secretory pathway VirB4
Ajs_4272	COG5268	conjugation
Ajs_4273	COG3838	Conjugal transfer protein Trbc
Ajs_4274	COG4962	Type ii secretion system protein e
Ajs_4292	COG1028	Short-chain dehydrogenase reductase Sdr
Ajs_4296	COG3041	Addiction module toxin RelE StbE family
Ajs_4297	COG3077	Addiction module antitoxin, RelB DinJ family
Ajs_4319	COG0550	Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supercoils. Finally, in the religation step, the DNA 3'-OH attacks the covalent intermediate to expel the active-site tyrosine and restore the DNA phosphodiester backbone