Ajs_0003 SM00052 Putative diguanylate phosphodiesterase Ajs_0003 SM00091 PAS domain Ajs_0003 SM00267 diguanylate cyclase Ajs_0004 SM00346 helix_turn_helix isocitrate lyase regulation Ajs_0010 SM00387 Histidine kinase-like ATPases Ajs_0010 SM00388 His Kinase A (phosphoacceptor) domain Ajs_0010 SM00448 cheY-homologous receiver domain Ajs_0011 SM00421 helix_turn_helix, Lux Regulon Ajs_0011 SM00448 cheY-homologous receiver domain Ajs_0017 SM00422 helix_turn_helix, mercury resistance Ajs_0020 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). Ajs_0020 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain Ajs_0026 SM01228 Ajs_0026 Ajs_0031 SM00470 ParB-like nuclease domain Ajs_0038 SM00342 helix_turn_helix, arabinose operon control protein Ajs_0049 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) Ajs_0049 SM00091 PAS domain Ajs_0049 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). Ajs_0050 SM00729 Elongator protein 3, MiaB family, Radical SAM Ajs_0068 SM00903 Flavin reductase like domain Ajs_0084 SM00341 Helicase and RNase D C-terminal Ajs_0084 SM00487 DEAD-like helicases superfamily Ajs_0084 SM00490 helicase superfamily c-terminal domain Ajs_0084 SM00956 Ajs_0084 Ajs_0088 SM00052 Putative diguanylate phosphodiesterase Ajs_0088 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. Ajs_0088 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) Ajs_0088 SM00091 PAS domain Ajs_0088 SM00267 diguanylate cyclase Ajs_0093 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. Ajs_0093 SM00382 ATPases associated with a variety of cellular activities Ajs_0111 SM00346 helix_turn_helix isocitrate lyase regulation Ajs_0120 SM00822 Ajs_0120 Ajs_0135 SM00839 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase Ajs_0140 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain Ajs_0146 SM00382 ATPases associated with a variety of cellular activities Ajs_0147 SM01018 B12 binding domain Ajs_0156 SM00382 ATPases associated with a variety of cellular activities Ajs_0157 SM00382 ATPases associated with a variety of cellular activities Ajs_0159 SM00822 Ajs_0159 Ajs_0160 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). Ajs_0160 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain Ajs_0161 SM00382 ATPases associated with a variety of cellular activities Ajs_0163 SM00938 Nitrogen regulatory protein P-II Ajs_0169 SM00945 ProQ/FINO family Ajs_0171 SM00871 Bacterial transcription activator, effector binding domain Ajs_0176 SM01005 Alanine racemase, C-terminal domain Ajs_0180 SM00382 ATPases associated with a variety of cellular activities Ajs_0193 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain Ajs_0193 SM00387 Histidine kinase-like ATPases Ajs_0193 SM00388 His Kinase A (phosphoacceptor) domain Ajs_0194 SM00448 cheY-homologous receiver domain Ajs_0194 SM00862 Transcriptional regulatory protein, C terminal Ajs_0198 SM00974 Ajs_0198 Ajs_0200 SM00342 helix_turn_helix, arabinose operon control protein Ajs_0204 SM00345 helix_turn_helix gluconate operon transcriptional repressor Ajs_0204 SM00895 Ajs_0204 Ajs_0205 SM00382 ATPases associated with a variety of cellular activities Ajs_0205 SM00989 Ajs_0205 Ajs_0223 SM00859 Semialdehyde dehydrogenase, NAD binding domain Ajs_0228 SM00849 Metallo-beta-lactamase superfamily Ajs_0229 SM00345 helix_turn_helix gluconate operon transcriptional repressor Ajs_0229 SM00895 Ajs_0229 Ajs_0231 SM00822 Ajs_0231 Ajs_0236 SM00845 GatB domain Ajs_0244 SM00382 ATPases associated with a variety of cellular activities Ajs_0246 SM00062 Bacterial periplasmic substrate-binding proteins Ajs_0251 SM00382 ATPases associated with a variety of cellular activities Ajs_0257 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) Ajs_0257 SM00091 PAS domain Ajs_0257 SM00267 diguanylate cyclase Ajs_0264 SM00347 helix_turn_helix multiple antibiotic resistance protein Ajs_0266 SM01004 Delta-aminolevulinic acid dehydratase Ajs_0272 SM00936 Penicillin-binding protein 5, C-terminal domain Ajs_0275 SM00838 Elongation factor G C-terminus Ajs_0275 SM00889 Elongation factor G, domain IV Ajs_0277 SM01403 Ajs_0277 Ajs_0281 SM01382 Ajs_0281 Ajs_0281 SM01383 Ajs_0281 Ajs_0284 SM00322 K homology RNA-binding domain Ajs_0298 SM00729 Elongator protein 3, MiaB family, Radical SAM Ajs_0308 SM00382 ATPases associated with a variety of cellular activities Ajs_0312 SM00487 DEAD-like helicases superfamily Ajs_0312 SM00490 helicase superfamily c-terminal domain Ajs_0325 SM00346 helix_turn_helix isocitrate lyase regulation Ajs_0343 SM00836 DALR anticodon binding domain Ajs_0343 SM01016 Arginyl tRNA synthetase N terminal dom Ajs_0347 SM00382 ATPases associated with a variety of cellular activities Ajs_0350 SM00981 Ajs_0350 Ajs_0364 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). Ajs_0364 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain Ajs_0367 SM00830 Chorismate mutase type II Ajs_0371 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) Ajs_0371 SM00091 PAS domain Ajs_0371 SM00267 diguanylate cyclase Ajs_0372 SM00986 Uracil DNA glycosylase superfamily Ajs_0372 SM00987 UreE urease accessory protein, C-terminal domain Ajs_0376 SM00487 DEAD-like helicases superfamily Ajs_0376 SM00490 helicase superfamily c-terminal domain Ajs_0379 SM00880 Ajs_0379 Ajs_0379 SM01118 Ajs_0379 Ajs_0383 SM00420 helix_turn_helix, Deoxyribose operon repressor Ajs_0383 SM01134 Ajs_0383 Ajs_0384 SM00382 ATPases associated with a variety of cellular activities Ajs_0385 SM00382 ATPases associated with a variety of cellular activities Ajs_0391 SM01374 Ajs_0391 Ajs_0392 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. Ajs_0405 SM00363 S4 RNA-binding domain Ajs_0405 SM01390 Ajs_0405 Ajs_0406 SM00662 RNA polymerases D Ajs_0408 SM00984 UDP binding domain Ajs_0416 SM00749 bacterial OsmY and nodulation domain Ajs_0419 SM00100 Cyclic nucleotide-monophosphate binding domain Ajs_0420 SM00382 ATPases associated with a variety of cellular activities Ajs_0432 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain Ajs_0432 SM00387 Histidine kinase-like ATPases Ajs_0433 SM00421 helix_turn_helix, Lux Regulon Ajs_0433 SM00448 cheY-homologous receiver domain Ajs_0436 SM00926 Molybdopterin oxidoreductase Fe4S4 domain Ajs_0441 SM00947 Carbonic anhydrase Ajs_0448 SM00346 helix_turn_helix isocitrate lyase regulation Ajs_0451 SM00926 Molybdopterin oxidoreductase Fe4S4 domain Ajs_0465 SM00382 ATPases associated with a variety of cellular activities Ajs_0469 SM00382 ATPases associated with a variety of cellular activities Ajs_0471 SM00382 ATPases associated with a variety of cellular activities Ajs_0473 SM00100 Cyclic nucleotide-monophosphate binding domain Ajs_0473 SM00419 helix_turn_helix, cAMP Regulatory protein Ajs_0474 SM00363 S4 RNA-binding domain Ajs_0475 SM00387 Histidine kinase-like ATPases Ajs_0480 SM00220 Serine/Threonine protein kinases, catalytic domain Ajs_0483 SM00347 helix_turn_helix multiple antibiotic resistance protein Ajs_0490 SM01119 Ajs_0490 Ajs_0491 SM00855 Phosphoglycerate mutase family Ajs_0495 SM00905 Dihydroneopterin aldolase Ajs_0512 SM00702 Prolyl 4-hydroxylase alpha subunit homologues. Ajs_0515 SM00849 Metallo-beta-lactamase superfamily Ajs_0521 SM00344 helix_turn_helix ASNC type Ajs_0523 SM01091 Transporter associated domain Ajs_0526 SM00825 Beta-ketoacyl synthase Ajs_0530 SM00563 Phosphate acyltransferases Ajs_0532 SM00450 Rhodanese Homology Domain Ajs_0533 SM00257 Lysin motif Ajs_0545 SM00382 ATPases associated with a variety of cellular activities Ajs_0554 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain Ajs_0554 SM00387 Histidine kinase-like ATPases Ajs_0554 SM00388 His Kinase A (phosphoacceptor) domain Ajs_0554 SM00448 cheY-homologous receiver domain Ajs_0555 SM00421 helix_turn_helix, Lux Regulon Ajs_0555 SM00448 cheY-homologous receiver domain Ajs_0562 SM01321 Ajs_0562 Ajs_0567 SM00953 Ajs_0567 Ajs_0582 SM00382 ATPases associated with a variety of cellular activities Ajs_0583 SM00382 ATPases associated with a variety of cellular activities Ajs_0602 SM00382 ATPases associated with a variety of cellular activities Ajs_0608 SM00062 Bacterial periplasmic substrate-binding proteins Ajs_0609 SM00062 Bacterial periplasmic substrate-binding proteins Ajs_0612 SM00382 ATPases associated with a variety of cellular activities Ajs_0614 SM00344 helix_turn_helix ASNC type Ajs_0618 SM00996 S-adenosyl-L-homocysteine hydrolase Ajs_0618 SM00997 S-adenosyl-L-homocysteine hydrolase, NAD binding domain Ajs_0632 SM00363 S4 RNA-binding domain Ajs_0637 SM00387 Histidine kinase-like ATPases Ajs_0637 SM00388 His Kinase A (phosphoacceptor) domain Ajs_0639 SM00271 DnaJ molecular chaperone homology domain Ajs_0640 SM00344 helix_turn_helix ASNC type Ajs_0645 SM00829 Enoylreductase Ajs_0647 SM00387 Histidine kinase-like ATPases Ajs_0647 SM00388 His Kinase A (phosphoacceptor) domain Ajs_0647 SM00448 cheY-homologous receiver domain Ajs_0648 SM00138 Methyltransferase, chemotaxis proteins Ajs_0650 SM00387 Histidine kinase-like ATPases Ajs_0650 SM00388 His Kinase A (phosphoacceptor) domain Ajs_0650 SM00448 cheY-homologous receiver domain Ajs_0651 SM00448 cheY-homologous receiver domain Ajs_0656 SM01209 Ajs_0656 Ajs_0658 SM00382 ATPases associated with a variety of cellular activities Ajs_0666 SM00382 ATPases associated with a variety of cellular activities Ajs_0677 SM00855 Phosphoglycerate mutase family Ajs_0690 SM00382 ATPases associated with a variety of cellular activities Ajs_0691 SM00382 ATPases associated with a variety of cellular activities Ajs_0698 SM00267 diguanylate cyclase Ajs_0700 SM00883 Chaperonin 10 Kd subunit Ajs_0715 SM00849 Metallo-beta-lactamase superfamily Ajs_0718 SM00857 Resolvase, N terminal domain Ajs_0728 SM01219 Ajs_0728 Ajs_0730 SM00842 Cell division protein FtsA Ajs_0734 SM00965 Secretin and TonB N terminus short domain Ajs_0736 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. Ajs_0738 SM00382 ATPases associated with a variety of cellular activities Ajs_0740 SM01321 Ajs_0740 Ajs_0743 SM00062 Bacterial periplasmic substrate-binding proteins Ajs_0743 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. Ajs_0745 SM00382 ATPases associated with a variety of cellular activities Ajs_0748 SM00382 ATPases associated with a variety of cellular activities Ajs_0755 SM00382 ATPases associated with a variety of cellular activities Ajs_0784 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. Ajs_0796 SM00957 SecA DEAD-like domain Ajs_0796 SM00958 SecA preprotein cross-linking domain Ajs_0805 SM00382 ATPases associated with a variety of cellular activities Ajs_0830 SM00382 ATPases associated with a variety of cellular activities Ajs_0832 SM00487 DEAD-like helicases superfamily Ajs_0833 SM00487 DEAD-like helicases superfamily Ajs_0833 SM00490 helicase superfamily c-terminal domain Ajs_0835 SM00382 ATPases associated with a variety of cellular activities Ajs_0844 SM00359 Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase Ajs_0848 SM01091 Transporter associated domain Ajs_0851 SM00937 Ajs_0851 Ajs_0859 SM00382 ATPases associated with a variety of cellular activities Ajs_0868 SM00978 Ajs_0868 Ajs_0872 SM00834 Putative regulatory protein Ajs_0880 SM01034 Sensors of blue-light using FAD Ajs_0888 SM00382 ATPases associated with a variety of cellular activities Ajs_0889 SM00382 ATPases associated with a variety of cellular activities Ajs_0895 SM01400 Ajs_0895 Ajs_0898 SM00028 Tetratricopeptide repeats Ajs_0899 SM00898 Formamidopyrimidine-DNA glycosylase N-terminal domain Ajs_0899 SM01232 Ajs_0899 Ajs_0901 SM00478 endonuclease III Ajs_0901 SM00525 Ajs_0901 Ajs_0921 SM00729 Elongator protein 3, MiaB family, Radical SAM Ajs_0924 SM00331 Sigma factor PP2C-like phosphatases Ajs_0924 SM00332 Serine/threonine phosphatases, family 2C, catalytic domain Ajs_0925 SM00220 Serine/Threonine protein kinases, catalytic domain Ajs_0931 SM00382 ATPases associated with a variety of cellular activities Ajs_0932 SM00530 Helix-turn-helix XRE-family like proteins Ajs_0946 SM00530 Helix-turn-helix XRE-family like proteins Ajs_0947 SM00072 Guanylate kinase homologues. Ajs_0948 SM01409 Ajs_0948 Ajs_0949 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. Ajs_0949 SM00954 Region found in RelA / SpoT proteins Ajs_0952 SM01387 Ajs_0952 Ajs_0953 SM00316 Ribosomal protein S1-like RNA-binding domain Ajs_0953 SM00322 K homology RNA-binding domain Ajs_0954 SM00829 Enoylreductase Ajs_0962 SM00928 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region Ajs_0963 SM00929 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region Ajs_0973 SM00382 ATPases associated with a variety of cellular activities Ajs_0977 SM00839 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase Ajs_0978 SM00853 MutL C terminal dimerisation domain Ajs_0978 SM01340 Ajs_0978 Ajs_0983 SM00646 Ajs_0983 Ajs_0990 SM00052 Putative diguanylate phosphodiesterase Ajs_0991 SM00052 Putative diguanylate phosphodiesterase Ajs_0997 SM01192 Ajs_0997 Ajs_0997 SM01193 Ajs_0997 Ajs_1005 SM00558 A domain family that is part of the cupin metalloenzyme superfamily. Ajs_1008 SM00849 Metallo-beta-lactamase superfamily Ajs_1010 SM01130 Ajs_1010 Ajs_1014 SM00387 Histidine kinase-like ATPases Ajs_1014 SM00433 TopoisomeraseII Ajs_1016 SM00434 DNA Topoisomerase IV Ajs_1017 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). Ajs_1017 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain Ajs_1033 SM00450 Rhodanese Homology Domain Ajs_1038 SM00861 Transketolase, pyrimidine binding domain Ajs_1044 SM00448 cheY-homologous receiver domain Ajs_1044 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. Ajs_1049 SM00829 Enoylreductase Ajs_1051 SM00852 Probable molybdopterin binding domain Ajs_1058 SM00100 Cyclic nucleotide-monophosphate binding domain Ajs_1058 SM00419 helix_turn_helix, cAMP Regulatory protein Ajs_1059 SM00448 cheY-homologous receiver domain Ajs_1059 SM00862 Transcriptional regulatory protein, C terminal Ajs_1060 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain Ajs_1060 SM00387 Histidine kinase-like ATPases Ajs_1060 SM00388 His Kinase A (phosphoacceptor) domain Ajs_1065 SM00382 ATPases associated with a variety of cellular activities Ajs_1076 SM00345 helix_turn_helix gluconate operon transcriptional repressor Ajs_1076 SM00895 Ajs_1076 Ajs_1091 SM00100 Cyclic nucleotide-monophosphate binding domain Ajs_1091 SM00419 helix_turn_helix, cAMP Regulatory protein Ajs_1092 SM00729 Elongator protein 3, MiaB family, Radical SAM Ajs_1101 SM00382 ATPases associated with a variety of cellular activities Ajs_1111 SM00347 helix_turn_helix multiple antibiotic resistance protein Ajs_1112 SM00919 Malic enzyme, NAD binding domain Ajs_1112 SM01274 Ajs_1112 Ajs_1118 SM00345 helix_turn_helix gluconate operon transcriptional repressor Ajs_1118 SM00895 Ajs_1118 Ajs_1120 SM01329 Ajs_1120 Ajs_1127 SM00345 helix_turn_helix gluconate operon transcriptional repressor Ajs_1127 SM00895 Ajs_1127 Ajs_1132 SM00487 DEAD-like helicases superfamily Ajs_1132 SM00490 helicase superfamily c-terminal domain Ajs_1136 SM00382 ATPases associated with a variety of cellular activities Ajs_1137 SM00710 Parallel beta-helix repeats Ajs_1137 SM00722 Domain present in carbohydrate binding proteins and sugar hydrolses Ajs_1138 SM00900 Ajs_1138 Ajs_1144 SM00528 Domain in histone-like proteins of HNS family Ajs_1148 SM00448 cheY-homologous receiver domain Ajs_1148 SM00850 LytTr DNA-binding domain Ajs_1153 SM00267 diguanylate cyclase Ajs_1158 SM00267 diguanylate cyclase Ajs_1159 SM00829 Enoylreductase Ajs_1162 SM00257 Lysin motif Ajs_1163 SM00363 S4 RNA-binding domain Ajs_1165 SM00363 S4 RNA-binding domain Ajs_1166 SM00562 Ajs_1166 Ajs_1168 SM00028 Tetratricopeptide repeats Ajs_1173 SM00564 beta-propeller repeat Ajs_1177 SM00244 prohibitin homologues Ajs_1178 SM00244 prohibitin homologues Ajs_1181 SM00788 Adenylosuccinate synthetase Ajs_1188 SM00852 Probable molybdopterin binding domain Ajs_1189 SM01230 Ajs_1189 Ajs_1191 SM00387 Histidine kinase-like ATPases Ajs_1191 SM00388 His Kinase A (phosphoacceptor) domain Ajs_1192 SM00382 ATPases associated with a variety of cellular activities Ajs_1192 SM00448 cheY-homologous receiver domain Ajs_1210 SM00382 ATPases associated with a variety of cellular activities Ajs_1210 SM00994 ClpX C4-type zinc finger Ajs_1210 SM01086 C-terminal, D2-small domain, of ClpB protein Ajs_1211 SM00382 ATPases associated with a variety of cellular activities Ajs_1211 SM00464 Found in ATP-dependent protease La (LON) Ajs_1215 SM00382 ATPases associated with a variety of cellular activities Ajs_1216 SM00382 ATPases associated with a variety of cellular activities Ajs_1219 SM00342 helix_turn_helix, arabinose operon control protein Ajs_1236 SM00448 cheY-homologous receiver domain Ajs_1236 SM00862 Transcriptional regulatory protein, C terminal Ajs_1241 SM00422 helix_turn_helix, mercury resistance Ajs_1243 SM00014 Acid phosphatase homologues Ajs_1246 SM00966 SpoVT / AbrB like domain Ajs_1267 SM00382 ATPases associated with a variety of cellular activities Ajs_1280 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor Ajs_1281 SM00226 Low molecular weight phosphatase family Ajs_1285 SM00487 DEAD-like helicases superfamily Ajs_1301 SM00422 helix_turn_helix, mercury resistance Ajs_1311 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain Ajs_1311 SM00437 Bacterial DNA topoisomerase I DNA-binding domain Ajs_1311 SM00493 Ajs_1311 Ajs_1336 SM00422 helix_turn_helix, mercury resistance Ajs_1341 SM00382 ATPases associated with a variety of cellular activities Ajs_1349 SM00530 Helix-turn-helix XRE-family like proteins Ajs_1358 SM00448 cheY-homologous receiver domain Ajs_1358 SM00862 Transcriptional regulatory protein, C terminal Ajs_1359 SM00387 Histidine kinase-like ATPases Ajs_1359 SM00388 His Kinase A (phosphoacceptor) domain Ajs_1363 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor Ajs_1363 SM00450 Rhodanese Homology Domain Ajs_1371 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor Ajs_1373 SM00422 helix_turn_helix, mercury resistance Ajs_1375 SM00829 Enoylreductase Ajs_1384 SM00822 Ajs_1384 Ajs_1389 SM00953 Ajs_1389 Ajs_1417 SM00487 DEAD-like helicases superfamily Ajs_1445 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain Ajs_1445 SM00437 Bacterial DNA topoisomerase I DNA-binding domain Ajs_1445 SM00493 Ajs_1445 Ajs_1460 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain Ajs_1460 SM00387 Histidine kinase-like ATPases Ajs_1460 SM00388 His Kinase A (phosphoacceptor) domain Ajs_1461 SM00448 cheY-homologous receiver domain Ajs_1461 SM00862 Transcriptional regulatory protein, C terminal Ajs_1469 SM00746 metallochaperone-like domain Ajs_1474 SM00422 helix_turn_helix, mercury resistance Ajs_1495 SM00382 ATPases associated with a variety of cellular activities Ajs_1505 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. Ajs_1506 SM01400 Ajs_1506 Ajs_1507 SM00941 Pyrimidine nucleoside phosphorylase C-terminal domain Ajs_1508 SM00849 Metallo-beta-lactamase superfamily Ajs_1508 SM01027 Beta-Casp domain Ajs_1547 SM00530 Helix-turn-helix XRE-family like proteins Ajs_1556 SM00778 Zinc-binding domain of primase-helicase Ajs_1578 SM00490 helicase superfamily c-terminal domain Ajs_1583 SM00953 Ajs_1583 Ajs_1589 SM00411 bacterial (prokaryotic) histone like domain Ajs_1591 SM00470 ParB-like nuclease domain Ajs_1598 SM00528 Domain in histone-like proteins of HNS family Ajs_1616 SM00344 helix_turn_helix ASNC type Ajs_1622 SM00028 Tetratricopeptide repeats Ajs_1623 SM00840 Ajs_1623 Ajs_1624 SM00478 endonuclease III Ajs_1637 SM00530 Helix-turn-helix XRE-family like proteins Ajs_1639 SM00363 S4 RNA-binding domain Ajs_1640 SM00387 Histidine kinase-like ATPases Ajs_1640 SM00388 His Kinase A (phosphoacceptor) domain Ajs_1641 SM00448 cheY-homologous receiver domain Ajs_1641 SM00862 Transcriptional regulatory protein, C terminal Ajs_1647 SM00450 Rhodanese Homology Domain Ajs_1650 SM00450 Rhodanese Homology Domain Ajs_1654 SM00831 Cation transporter/ATPase, N-terminus Ajs_1657 SM00116 Domain in cystathionine beta-synthase and other proteins. Ajs_1669 SM00116 Domain in cystathionine beta-synthase and other proteins. Ajs_1682 SM00382 ATPases associated with a variety of cellular activities Ajs_1683 SM00382 ATPases associated with a variety of cellular activities Ajs_1686 SM00267 diguanylate cyclase Ajs_1690 SM00382 ATPases associated with a variety of cellular activities Ajs_1691 SM00062 Bacterial periplasmic substrate-binding proteins Ajs_1697 SM00829 Enoylreductase Ajs_1707 SM00316 Ribosomal protein S1-like RNA-binding domain Ajs_1707 SM00732 Likely ribonuclease with RNase H fold. Ajs_1710 SM00091 PAS domain Ajs_1710 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain Ajs_1721 SM00248 ankyrin repeats Ajs_1722 SM00382 ATPases associated with a variety of cellular activities Ajs_1725 SM00028 Tetratricopeptide repeats Ajs_1733 SM00382 ATPases associated with a variety of cellular activities Ajs_1743 SM00849 Metallo-beta-lactamase superfamily Ajs_1747 SM00852 Probable molybdopterin binding domain Ajs_1749 SM00729 Elongator protein 3, MiaB family, Radical SAM Ajs_1759 SM00260 Two component signalling adaptor domain Ajs_1762 SM00938 Nitrogen regulatory protein P-II Ajs_1773 SM00917 LeuA allosteric (dimerisation) domain Ajs_1774 SM00917 LeuA allosteric (dimerisation) domain Ajs_1776 SM00346 helix_turn_helix isocitrate lyase regulation Ajs_1779 SM00100 Cyclic nucleotide-monophosphate binding domain Ajs_1779 SM00419 helix_turn_helix, cAMP Regulatory protein Ajs_1788 SM00287 Bacterial SH3 domain homologues Ajs_1803 SM00857 Resolvase, N terminal domain Ajs_1806 SM00530 Helix-turn-helix XRE-family like proteins Ajs_1813 SM00382 ATPases associated with a variety of cellular activities Ajs_1822 SM00861 Transketolase, pyrimidine binding domain Ajs_1827 SM00331 Sigma factor PP2C-like phosphatases Ajs_1827 SM00332 Serine/threonine phosphatases, family 2C, catalytic domain Ajs_1828 SM00487 DEAD-like helicases superfamily Ajs_1828 SM00491 Ajs_1828 Ajs_1830 SM00481 DNA polymerase alpha chain like domain Ajs_1832 SM00382 ATPases associated with a variety of cellular activities Ajs_1832 SM01086 C-terminal, D2-small domain, of ClpB protein Ajs_1836 SM00382 ATPases associated with a variety of cellular activities Ajs_1838 SM00479 Ajs_1838 Ajs_1840 SM00382 ATPases associated with a variety of cellular activities Ajs_1851 SM00422 helix_turn_helix, mercury resistance Ajs_1854 SM00382 ATPases associated with a variety of cellular activities Ajs_1889 SM00829 Enoylreductase Ajs_1892 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. Ajs_1896 SM00382 ATPases associated with a variety of cellular activities Ajs_1899 SM01209 Ajs_1899 Ajs_1899 SM01210 Ajs_1899 Ajs_1904 SM00100 Cyclic nucleotide-monophosphate binding domain Ajs_1904 SM00419 helix_turn_helix, cAMP Regulatory protein Ajs_1914 SM00316 Ribosomal protein S1-like RNA-binding domain Ajs_1934 SM00091 PAS domain Ajs_1934 SM00387 Histidine kinase-like ATPases Ajs_1934 SM00388 His Kinase A (phosphoacceptor) domain Ajs_1934 SM00448 cheY-homologous receiver domain Ajs_1942 SM00344 helix_turn_helix ASNC type Ajs_1946 SM00342 helix_turn_helix, arabinose operon control protein Ajs_1947 SM00382 ATPases associated with a variety of cellular activities Ajs_1951 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). Ajs_1951 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain Ajs_1952 SM00387 Histidine kinase-like ATPases Ajs_1952 SM00388 His Kinase A (phosphoacceptor) domain Ajs_1953 SM00448 cheY-homologous receiver domain Ajs_1953 SM00862 Transcriptional regulatory protein, C terminal Ajs_1957 SM01144 Ajs_1957 Ajs_1958 SM01060 Ajs_1958 Ajs_1960 SM00091 PAS domain Ajs_1960 SM00421 helix_turn_helix, Lux Regulon Ajs_1961 SM00882 Coenzyme A transferase Ajs_1962 SM00882 Coenzyme A transferase Ajs_1964 SM01126 Ajs_1964 Ajs_1967 SM00481 DNA polymerase alpha chain like domain Ajs_1968 SM00671 Sel1-like repeats. Ajs_1979 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain Ajs_1980 SM00267 diguanylate cyclase Ajs_1990 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain Ajs_1993 SM01130 Ajs_1993 Ajs_1995 SM00345 helix_turn_helix gluconate operon transcriptional repressor Ajs_1995 SM00895 Ajs_1995 Ajs_1996 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain Ajs_1998 SM00858 Ajs_1998 Ajs_2012 SM00116 Domain in cystathionine beta-synthase and other proteins. Ajs_2017 SM00052 Putative diguanylate phosphodiesterase Ajs_2017 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) Ajs_2017 SM00091 PAS domain Ajs_2017 SM00267 diguanylate cyclase Ajs_2020 SM00342 helix_turn_helix, arabinose operon control protein Ajs_2020 SM00478 endonuclease III Ajs_2020 SM01009 AlkA N-terminal domain Ajs_2027 SM00450 Rhodanese Homology Domain Ajs_2036 SM00344 helix_turn_helix ASNC type Ajs_2039 SM00345 helix_turn_helix gluconate operon transcriptional repressor Ajs_2039 SM00895 Ajs_2039 Ajs_2041 SM00382 ATPases associated with a variety of cellular activities Ajs_2043 SM00878 Biotin carboxylase C-terminal domain Ajs_2045 SM00729 Elongator protein 3, MiaB family, Radical SAM Ajs_2045 SM00876 Biotin and Thiamin Synthesis associated domain Ajs_2046 SM00822 Ajs_2046 Ajs_2054 SM00354 helix_turn _helix lactose operon repressor Ajs_2061 SM00052 Putative diguanylate phosphodiesterase Ajs_2061 SM00091 PAS domain Ajs_2061 SM00267 diguanylate cyclase Ajs_2061 SM01079 Ajs_2061 Ajs_2062 SM00954 Region found in RelA / SpoT proteins Ajs_2065 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). Ajs_2065 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain Ajs_2071 SM00382 ATPases associated with a variety of cellular activities Ajs_2072 SM00822 Ajs_2072 Ajs_2083 SM00278 Helix-hairpin-helix DNA-binding motif class 1 Ajs_2083 SM00292 breast cancer carboxy-terminal domain Ajs_2083 SM00532 Ligase N family Ajs_2085 SM00771 ZipA, C-terminal domain (FtsZ-binding) Ajs_2088 SM00052 Putative diguanylate phosphodiesterase Ajs_2088 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) Ajs_2088 SM00091 PAS domain Ajs_2088 SM00267 diguanylate cyclase Ajs_2088 SM01079 Ajs_2088 Ajs_2089 SM00382 ATPases associated with a variety of cellular activities Ajs_2098 SM00829 Enoylreductase Ajs_2113 SM00062 Bacterial periplasmic substrate-binding proteins Ajs_2117 SM00702 Prolyl 4-hydroxylase alpha subunit homologues. Ajs_2126 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) Ajs_2126 SM00091 PAS domain Ajs_2126 SM00387 Histidine kinase-like ATPases Ajs_2126 SM00388 His Kinase A (phosphoacceptor) domain Ajs_2127 SM00421 helix_turn_helix, Lux Regulon Ajs_2127 SM00448 cheY-homologous receiver domain Ajs_2138 SM00479 Ajs_2138 Ajs_2141 SM00271 DnaJ molecular chaperone homology domain Ajs_2150 SM00487 DEAD-like helicases superfamily Ajs_2150 SM00490 helicase superfamily c-terminal domain Ajs_2152 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). Ajs_2152 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain Ajs_2165 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain Ajs_2174 SM00530 Helix-turn-helix XRE-family like proteins Ajs_2198 SM00487 DEAD-like helicases superfamily Ajs_2198 SM00490 helicase superfamily c-terminal domain Ajs_2203 SM00490 helicase superfamily c-terminal domain Ajs_2205 SM00155 Phospholipase D. Active site motifs. Ajs_2214 SM00530 Helix-turn-helix XRE-family like proteins Ajs_2218 SM00028 Tetratricopeptide repeats Ajs_2220 SM00487 DEAD-like helicases superfamily Ajs_2233 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain Ajs_2233 SM00437 Bacterial DNA topoisomerase I DNA-binding domain Ajs_2233 SM00493 Ajs_2233 Ajs_2243 SM00729 Elongator protein 3, MiaB family, Radical SAM Ajs_2252 SM00530 Helix-turn-helix XRE-family like proteins Ajs_2256 SM00248 ankyrin repeats Ajs_2268 SM00967 RNA 2'-O ribose methyltransferase substrate binding Ajs_2270 SM00382 ATPases associated with a variety of cellular activities Ajs_2274 SM00749 bacterial OsmY and nodulation domain Ajs_2276 SM00267 diguanylate cyclase Ajs_2294 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. Ajs_2297 SM01329 Ajs_2297 Ajs_2309 SM00870 Ajs_2309 Ajs_2313 SM00382 ATPases associated with a variety of cellular activities Ajs_2313 SM00487 DEAD-like helicases superfamily Ajs_2313 SM00490 helicase superfamily c-terminal domain Ajs_2313 SM00847 Helicase associated domain (HA2) Add an annotation Ajs_2314 SM00858 Ajs_2314 Ajs_2321 SM00382 ATPases associated with a variety of cellular activities Ajs_2323 SM00248 ankyrin repeats Ajs_2335 SM00382 ATPases associated with a variety of cellular activities Ajs_2345 SM00382 ATPases associated with a variety of cellular activities Ajs_2345 SM00930 Ajs_2345 Ajs_2348 SM00493 Ajs_2348 Ajs_2350 SM00382 ATPases associated with a variety of cellular activities Ajs_2358 SM00357 Cold shock protein domain Ajs_2358 SM00382 ATPases associated with a variety of cellular activities Ajs_2358 SM00959 Rho termination factor, N-terminal domain Ajs_2361 SM00382 ATPases associated with a variety of cellular activities Ajs_2366 SM00091 PAS domain Ajs_2366 SM00387 Histidine kinase-like ATPases Ajs_2366 SM00388 His Kinase A (phosphoacceptor) domain Ajs_2367 SM00448 cheY-homologous receiver domain Ajs_2367 SM00862 Transcriptional regulatory protein, C terminal Ajs_2369 SM00382 ATPases associated with a variety of cellular activities Ajs_2373 SM00554 Four repeated domains in the Fasciclin I family of proteins, present in many other contexts. Ajs_2377 SM00855 Phosphoglycerate mutase family Ajs_2380 SM00052 Putative diguanylate phosphodiesterase Ajs_2380 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) Ajs_2380 SM00091 PAS domain Ajs_2380 SM00267 diguanylate cyclase Ajs_2383 SM00382 ATPases associated with a variety of cellular activities Ajs_2385 SM01103 Ajs_2385 Ajs_2390 SM00851 MGS-like domain Ajs_2390 SM01096 Carbamoyl-phosphate synthetase large chain, oligomerisation domain Ajs_2392 SM01097 Carbamoyl-phosphate synthase small chain, CPSase domain Ajs_2393 SM00422 helix_turn_helix, mercury resistance Ajs_2394 SM00411 bacterial (prokaryotic) histone like domain Ajs_2395 SM00873 B3/4 domain Ajs_2395 SM00874 tRNA synthetase B5 domain Ajs_2395 SM00896 Ferredoxin-fold anticodon binding domain Ajs_2400 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain Ajs_2404 SM00151 SWI complex, BAF60b domains Ajs_2419 SM00344 helix_turn_helix ASNC type Ajs_2424 SM00926 Molybdopterin oxidoreductase Fe4S4 domain Ajs_2426 SM00487 DEAD-like helicases superfamily Ajs_2426 SM00490 helicase superfamily c-terminal domain Ajs_2428 SM00488 Ajs_2428 Ajs_2428 SM00491 Ajs_2428 Ajs_2429 SM00990 Ajs_2429 Ajs_2430 SM01126 Ajs_2430 Ajs_2431 SM00448 cheY-homologous receiver domain Ajs_2431 SM00862 Transcriptional regulatory protein, C terminal Ajs_2432 SM00387 Histidine kinase-like ATPases Ajs_2432 SM00388 His Kinase A (phosphoacceptor) domain Ajs_2434 SM00849 Metallo-beta-lactamase superfamily Ajs_2435 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor Ajs_2442 SM00825 Beta-ketoacyl synthase Ajs_2444 SM00382 ATPases associated with a variety of cellular activities Ajs_2453 SM00530 Helix-turn-helix XRE-family like proteins Ajs_2464 SM00434 DNA Topoisomerase IV Ajs_2466 SM00830 Chorismate mutase type II Ajs_2469 SM00316 Ribosomal protein S1-like RNA-binding domain Ajs_2470 SM00411 bacterial (prokaryotic) histone like domain Ajs_2472 SM00028 Tetratricopeptide repeats Ajs_2498 SM00671 Sel1-like repeats. Ajs_2501 SM00318 Staphylococcal nuclease homologues Ajs_2513 SM00382 ATPases associated with a variety of cellular activities Ajs_2514 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor Ajs_2516 SM00226 Low molecular weight phosphatase family Ajs_2522 SM00822 Ajs_2522 Ajs_2524 SM00559 Ku70 and Ku80 are 70kDa and 80kDa subunits of the Lupus Ku autoantigen Ajs_2528 SM00974 Ajs_2528 Ajs_2529 SM00487 DEAD-like helicases superfamily Ajs_2548 SM00116 Domain in cystathionine beta-synthase and other proteins. Ajs_2548 SM01240 Ajs_2548 Ajs_2562 SM00316 Ribosomal protein S1-like RNA-binding domain Ajs_2562 SM00322 K homology RNA-binding domain Ajs_2568 SM00316 Ribosomal protein S1-like RNA-binding domain Ajs_2568 SM00357 Cold shock protein domain Ajs_2568 SM00955 Ajs_2568 Ajs_2576 SM00935 Outer membrane protein (OmpH-like) Ajs_2593 SM00422 helix_turn_helix, mercury resistance Ajs_2608 SM00382 ATPases associated with a variety of cellular activities Ajs_2609 SM00487 DEAD-like helicases superfamily Ajs_2609 SM00490 helicase superfamily c-terminal domain Ajs_2610 SM00631 Ajs_2610 Ajs_2618 SM00487 DEAD-like helicases superfamily Ajs_2621 SM00411 bacterial (prokaryotic) histone like domain Ajs_2623 SM00278 Helix-hairpin-helix DNA-binding motif class 1 Ajs_2623 SM00465 GIY-YIG type nucleases (URI domain) Ajs_2640 SM00470 ParB-like nuclease domain Ajs_2645 SM00530 Helix-turn-helix XRE-family like proteins Ajs_2675 SM00422 helix_turn_helix, mercury resistance Ajs_2680 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain Ajs_2688 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. Ajs_2689 SM01400 Ajs_2689 Ajs_2690 SM00941 Pyrimidine nucleoside phosphorylase C-terminal domain Ajs_2691 SM00849 Metallo-beta-lactamase superfamily Ajs_2691 SM01027 Beta-Casp domain Ajs_2699 SM00422 helix_turn_helix, mercury resistance Ajs_2710 SM00746 metallochaperone-like domain Ajs_2725 SM00448 cheY-homologous receiver domain Ajs_2725 SM00862 Transcriptional regulatory protein, C terminal Ajs_2726 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain Ajs_2726 SM00387 Histidine kinase-like ATPases Ajs_2726 SM00388 His Kinase A (phosphoacceptor) domain Ajs_2753 SM01207 Ajs_2753 Ajs_2764 SM00244 prohibitin homologues Ajs_2780 SM00387 Histidine kinase-like ATPases Ajs_2781 SM00448 cheY-homologous receiver domain Ajs_2786 SM00530 Helix-turn-helix XRE-family like proteins Ajs_2792 SM00345 helix_turn_helix gluconate operon transcriptional repressor Ajs_2792 SM00866 Ajs_2792 Ajs_2800 SM00829 Enoylreductase Ajs_2804 SM01126 Ajs_2804 Ajs_2809 SM00893 Electron transfer flavoprotein domain Ajs_2810 SM00893 Electron transfer flavoprotein domain Ajs_2814 SM00382 ATPases associated with a variety of cellular activities Ajs_2816 SM00460 Transglutaminase/protease-like homologues Ajs_2824 SM00382 ATPases associated with a variety of cellular activities Ajs_2830 SM01012 Ajs_2830 Ajs_2833 SM00382 ATPases associated with a variety of cellular activities Ajs_2834 SM00116 Domain in cystathionine beta-synthase and other proteins. Ajs_2841 SM00926 Molybdopterin oxidoreductase Fe4S4 domain Ajs_2853 SM00382 ATPases associated with a variety of cellular activities Ajs_2855 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor Ajs_2860 SM01329 Ajs_2860 Ajs_2875 SM00841 Elongation factor P, C-terminal Ajs_2875 SM01185 Ajs_2875 Ajs_2908 SM00382 ATPases associated with a variety of cellular activities Ajs_2926 SM00347 helix_turn_helix multiple antibiotic resistance protein Ajs_2937 SM00530 Helix-turn-helix XRE-family like proteins Ajs_2943 SM00470 ParB-like nuclease domain Ajs_2962 SM00360 RNA recognition motif Ajs_2968 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). Ajs_2972 SM00422 helix_turn_helix, mercury resistance Ajs_3014 SM00984 UDP binding domain Ajs_3046 SM00421 helix_turn_helix, Lux Regulon Ajs_3048 SM00974 Ajs_3048 Ajs_3051 SM00382 ATPases associated with a variety of cellular activities Ajs_3054 SM00226 Low molecular weight phosphatase family Ajs_3055 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor Ajs_3057 SM00382 ATPases associated with a variety of cellular activities Ajs_3073 SM00823 Phosphopantetheine attachment site Ajs_3080 SM00822 Ajs_3080 Ajs_3085 SM00382 ATPases associated with a variety of cellular activities Ajs_3087 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). Ajs_3087 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain Ajs_3098 SM00382 ATPases associated with a variety of cellular activities Ajs_3101 SM00382 ATPases associated with a variety of cellular activities Ajs_3102 SM01092 CO dehydrogenase flavoprotein C-terminal domain Ajs_3103 SM01008 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain Ajs_3104 SM00091 PAS domain Ajs_3104 SM00267 diguanylate cyclase Ajs_3105 SM00419 helix_turn_helix, cAMP Regulatory protein Ajs_3107 SM00052 Putative diguanylate phosphodiesterase Ajs_3107 SM00267 diguanylate cyclase Ajs_3112 SM00382 ATPases associated with a variety of cellular activities Ajs_3121 SM00382 ATPases associated with a variety of cellular activities Ajs_3122 SM00382 ATPases associated with a variety of cellular activities Ajs_3126 SM00382 ATPases associated with a variety of cellular activities Ajs_3128 SM00382 ATPases associated with a variety of cellular activities Ajs_3137 SM00400 zinc finger Ajs_3137 SM00493 Ajs_3137 Ajs_3147 SM00729 Elongator protein 3, MiaB family, Radical SAM Ajs_3149 SM00954 Region found in RelA / SpoT proteins Ajs_3153 SM00448 cheY-homologous receiver domain Ajs_3153 SM00862 Transcriptional regulatory protein, C terminal Ajs_3154 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain Ajs_3154 SM00387 Histidine kinase-like ATPases Ajs_3154 SM00388 His Kinase A (phosphoacceptor) domain Ajs_3157 SM00487 DEAD-like helicases superfamily Ajs_3157 SM00490 helicase superfamily c-terminal domain Ajs_3157 SM00982 Ajs_3157 Ajs_3157 SM01058 CarD-like/TRCF domain Ajs_3170 SM00478 endonuclease III Ajs_3170 SM00525 Ajs_3170 Ajs_3191 SM00155 Phospholipase D. Active site motifs. Ajs_3198 SM00382 ATPases associated with a variety of cellular activities Ajs_3198 SM01086 C-terminal, D2-small domain, of ClpB protein Ajs_3203 SM00852 Probable molybdopterin binding domain Ajs_3210 SM00670 Large family of predicted nucleotide-binding domains Ajs_3212 SM00382 ATPases associated with a variety of cellular activities Ajs_3219 SM00271 DnaJ molecular chaperone homology domain Ajs_3227 SM00849 Metallo-beta-lactamase superfamily Ajs_3227 SM01027 Beta-Casp domain Ajs_3233 SM01329 Ajs_3233 Ajs_3235 SM00859 Semialdehyde dehydrogenase, NAD binding domain Ajs_3243 SM00464 Found in ATP-dependent protease La (LON) Ajs_3251 SM00267 diguanylate cyclase Ajs_3251 SM00448 cheY-homologous receiver domain Ajs_3256 SM00382 ATPases associated with a variety of cellular activities Ajs_3257 SM00382 ATPases associated with a variety of cellular activities Ajs_3267 SM00358 Double-stranded RNA binding motif Ajs_3267 SM00535 Ribonuclease III family Ajs_3270 SM00838 Elongation factor G C-terminus Ajs_3271 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. Ajs_3276 SM00825 Beta-ketoacyl synthase Ajs_3277 SM00823 Phosphopantetheine attachment site Ajs_3278 SM00822 Ajs_3278 Ajs_3279 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. Ajs_3290 SM00316 Ribosomal protein S1-like RNA-binding domain Ajs_3293 SM00702 Prolyl 4-hydroxylase alpha subunit homologues. Ajs_3295 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). Ajs_3307 SM00382 ATPases associated with a variety of cellular activities Ajs_3309 SM01359 Ajs_3309 Ajs_3309 SM01360 Ajs_3309 Ajs_3310 SM01060 Ajs_3310 Ajs_3314 SM00448 cheY-homologous receiver domain Ajs_3314 SM00850 LytTr DNA-binding domain Ajs_3317 SM00279 Helix-hairpin-helix class 2 (Pol1 family) motifs Ajs_3317 SM00474 3'-5' exonuclease Ajs_3317 SM00475 5'-3' exonuclease Ajs_3317 SM00482 DNA polymerase A domain Ajs_3326 SM01240 Ajs_3326 Ajs_3341 SM00100 Cyclic nucleotide-monophosphate binding domain Ajs_3341 SM00419 helix_turn_helix, cAMP Regulatory protein Ajs_3345 SM00487 DEAD-like helicases superfamily Ajs_3345 SM00490 helicase superfamily c-terminal domain Ajs_3346 SM00479 Ajs_3346 Ajs_3361 SM00382 ATPases associated with a variety of cellular activities Ajs_3362 SM00382 ATPases associated with a variety of cellular activities Ajs_3365 SM00382 ATPases associated with a variety of cellular activities Ajs_3380 SM00986 Uracil DNA glycosylase superfamily Ajs_3380 SM00987 UreE urease accessory protein, C-terminal domain Ajs_3382 SM00843 Ajs_3382 Ajs_3396 SM00028 Tetratricopeptide repeats Ajs_3397 SM00507 HNH nucleases Ajs_3398 SM00904 Riboflavin kinase Ajs_3413 SM00382 ATPases associated with a variety of cellular activities Ajs_3415 SM00986 Uracil DNA glycosylase superfamily Ajs_3415 SM00987 UreE urease accessory protein, C-terminal domain Ajs_3418 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor Ajs_3420 SM00382 ATPases associated with a variety of cellular activities Ajs_3430 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). Ajs_3430 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain Ajs_3431 SM00481 DNA polymerase alpha chain like domain Ajs_3433 SM00327 von Willebrand factor (vWF) type A domain Ajs_3442 SM00052 Putative diguanylate phosphodiesterase Ajs_3446 SM00116 Domain in cystathionine beta-synthase and other proteins. Ajs_3447 SM01091 Transporter associated domain Ajs_3452 SM00463 Small MutS-related domain Ajs_3464 SM00926 Molybdopterin oxidoreductase Fe4S4 domain Ajs_3470 SM00926 Molybdopterin oxidoreductase Fe4S4 domain Ajs_3471 SM00928 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region Ajs_3480 SM00450 Rhodanese Homology Domain Ajs_3485 SM00342 helix_turn_helix, arabinose operon control protein Ajs_3504 SM00450 Rhodanese Homology Domain Ajs_3505 SM00855 Phosphoglycerate mutase family Ajs_3506 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. Ajs_3506 SM00245 tail specific protease Ajs_3508 SM00448 cheY-homologous receiver domain Ajs_3509 SM00421 helix_turn_helix, Lux Regulon Ajs_3509 SM00448 cheY-homologous receiver domain Ajs_3510 SM00387 Histidine kinase-like ATPases Ajs_3514 SM00749 bacterial OsmY and nodulation domain Ajs_3520 SM00382 ATPases associated with a variety of cellular activities Ajs_3520 SM00962 SRP54-type protein, GTPase domain Ajs_3520 SM00963 SRP54-type protein, helical bundle domain Ajs_3524 SM00100 Cyclic nucleotide-monophosphate binding domain Ajs_3525 SM00052 Putative diguanylate phosphodiesterase Ajs_3525 SM00091 PAS domain Ajs_3525 SM00267 diguanylate cyclase Ajs_3549 SM00882 Coenzyme A transferase Ajs_3550 SM00882 Coenzyme A transferase Ajs_3551 SM00346 helix_turn_helix isocitrate lyase regulation Ajs_3556 SM00382 ATPases associated with a variety of cellular activities Ajs_3563 SM00155 Phospholipase D. Active site motifs. Ajs_3566 SM00382 ATPases associated with a variety of cellular activities Ajs_3568 SM00563 Phosphate acyltransferases Ajs_3572 SM00732 Likely ribonuclease with RNase H fold. Ajs_3574 SM00073 Histidine Phosphotransfer domain Ajs_3574 SM00260 Two component signalling adaptor domain Ajs_3574 SM00387 Histidine kinase-like ATPases Ajs_3574 SM00448 cheY-homologous receiver domain Ajs_3574 SM01231 Ajs_3574 Ajs_3575 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). Ajs_3576 SM00260 Two component signalling adaptor domain Ajs_3577 SM00448 cheY-homologous receiver domain Ajs_3578 SM00448 cheY-homologous receiver domain Ajs_3584 SM00798 AICARFT/IMPCHase bienzyme Ajs_3584 SM00851 MGS-like domain Ajs_3589 SM00530 Helix-turn-helix XRE-family like proteins Ajs_3590 SM00530 Helix-turn-helix XRE-family like proteins Ajs_3593 SM00382 ATPases associated with a variety of cellular activities Ajs_3598 SM00382 ATPases associated with a variety of cellular activities Ajs_3606 SM00487 DEAD-like helicases superfamily Ajs_3625 SM00729 Elongator protein 3, MiaB family, Radical SAM Ajs_3626 SM00382 ATPases associated with a variety of cellular activities Ajs_3626 SM00962 SRP54-type protein, GTPase domain Ajs_3626 SM00963 SRP54-type protein, helical bundle domain Ajs_3629 SM00387 Histidine kinase-like ATPases Ajs_3629 SM00388 His Kinase A (phosphoacceptor) domain Ajs_3630 SM00382 ATPases associated with a variety of cellular activities Ajs_3630 SM00448 cheY-homologous receiver domain Ajs_3631 SM00644 Ajs_3631 Ajs_3638 SM00878 Biotin carboxylase C-terminal domain Ajs_3654 SM00955 Ajs_3654 Ajs_3659 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). Ajs_3659 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain Ajs_3660 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). Ajs_3660 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain Ajs_3664 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). Ajs_3664 SM01049 Ajs_3664 Ajs_3665 SM00864 Tubulin/FtsZ family, GTPase domain Ajs_3665 SM00865 Tubulin/FtsZ family, C-terminal domain Ajs_3666 SM00842 Cell division protein FtsA Ajs_3680 SM00382 ATPases associated with a variety of cellular activities Ajs_3680 SM01086 C-terminal, D2-small domain, of ClpB protein Ajs_3684 SM00833 Cobalamin synthesis protein cobW C-terminal domain Ajs_3691 SM00849 Metallo-beta-lactamase superfamily Ajs_3692 SM00363 S4 RNA-binding domain Ajs_3694 SM00382 ATPases associated with a variety of cellular activities Ajs_3700 SM00278 Helix-hairpin-helix DNA-binding motif class 1 Ajs_3705 SM00487 DEAD-like helicases superfamily Ajs_3705 SM00490 helicase superfamily c-terminal domain Ajs_3708 SM00052 Putative diguanylate phosphodiesterase Ajs_3708 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) Ajs_3708 SM00091 PAS domain Ajs_3708 SM00267 diguanylate cyclase Ajs_3711 SM00382 ATPases associated with a variety of cellular activities Ajs_3714 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. Ajs_3725 SM00155 Phospholipase D. Active site motifs. Ajs_3730 SM00893 Electron transfer flavoprotein domain Ajs_3731 SM00893 Electron transfer flavoprotein domain Ajs_3747 SM00382 ATPases associated with a variety of cellular activities Ajs_3756 SM00267 diguanylate cyclase Ajs_3759 SM00878 Biotin carboxylase C-terminal domain Ajs_3765 SM00342 helix_turn_helix, arabinose operon control protein Ajs_3772 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). Ajs_3778 SM00947 Carbonic anhydrase Ajs_3780 SM00422 helix_turn_helix, mercury resistance Ajs_3785 SM00382 ATPases associated with a variety of cellular activities Ajs_3786 SM00448 cheY-homologous receiver domain Ajs_3788 SM00138 Methyltransferase, chemotaxis proteins Ajs_3789 SM00260 Two component signalling adaptor domain Ajs_3790 SM00073 Histidine Phosphotransfer domain Ajs_3790 SM00260 Two component signalling adaptor domain Ajs_3790 SM00387 Histidine kinase-like ATPases Ajs_3790 SM01231 Ajs_3790 Ajs_3791 SM00448 cheY-homologous receiver domain Ajs_3793 SM00387 Histidine kinase-like ATPases Ajs_3793 SM00448 cheY-homologous receiver domain Ajs_3794 SM00421 helix_turn_helix, Lux Regulon Ajs_3794 SM00448 cheY-homologous receiver domain Ajs_3804 SM00382 ATPases associated with a variety of cellular activities Ajs_3817 SM00448 cheY-homologous receiver domain Ajs_3821 SM00382 ATPases associated with a variety of cellular activities Ajs_3821 SM00962 SRP54-type protein, GTPase domain Ajs_3826 SM00858 Ajs_3826 Ajs_3836 SM00047 Lysozyme subfamily 2 Ajs_3842 SM00345 helix_turn_helix gluconate operon transcriptional repressor Ajs_3851 SM00855 Phosphoglycerate mutase family Ajs_3853 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain Ajs_3857 SM00881 CoA binding domain Ajs_3862 SM00487 DEAD-like helicases superfamily Ajs_3862 SM00490 helicase superfamily c-terminal domain Ajs_3863 SM00870 Ajs_3863 Ajs_3876 SM00344 helix_turn_helix ASNC type Ajs_3878 SM00563 Phosphate acyltransferases Ajs_3879 SM00530 Helix-turn-helix XRE-family like proteins Ajs_3887 SM00897 FIST N domain Ajs_3887 SM01204 Ajs_3887 Ajs_3889 SM00411 bacterial (prokaryotic) histone like domain Ajs_3891 SM00448 cheY-homologous receiver domain Ajs_3892 SM00091 PAS domain Ajs_3892 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain Ajs_3892 SM00387 Histidine kinase-like ATPases Ajs_3892 SM00388 His Kinase A (phosphoacceptor) domain Ajs_3896 SM00663 RNA polymerase I subunit A N-terminus Ajs_3901 SM00649 Ribosomal protein L11/L12 Ajs_3902 SM00738 In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold. Ajs_3902 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. Ajs_3934 SM01001 AIR carboxylase Ajs_3944 SM00790 Aldehyde ferredoxin oxidoreductase, N-terminal domain Ajs_3954 SM01002 Alanine dehydrogenase/PNT, C-terminal domain Ajs_3954 SM01003 Alanine dehydrogenase/PNT, N-terminal domain Ajs_3957 SM01011 Aminopeptidase P, N-terminal domain Ajs_3959 SM00861 Transketolase, pyrimidine binding domain Ajs_3960 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain Ajs_3970 SM01144 Ajs_3970 Ajs_3971 SM00346 helix_turn_helix isocitrate lyase regulation Ajs_3975 SM00881 CoA binding domain Ajs_3990 SM00151 SWI complex, BAF60b domains Ajs_3990 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain Ajs_3990 SM00437 Bacterial DNA topoisomerase I DNA-binding domain Ajs_3990 SM00493 Ajs_3990 Ajs_3991 SM00317 SET (Su(var)3-9, Enhancer-of-zeste, Trithorax) domain Ajs_3998 SM00387 Histidine kinase-like ATPases Ajs_3998 SM00388 His Kinase A (phosphoacceptor) domain Ajs_3999 SM00448 cheY-homologous receiver domain Ajs_3999 SM00862 Transcriptional regulatory protein, C terminal Ajs_4001 SM00382 ATPases associated with a variety of cellular activities Ajs_4006 SM01323 Ajs_4006 Ajs_4009 SM00344 helix_turn_helix ASNC type Ajs_4013 SM00925 MltA specific insert domain Ajs_4015 SM00421 helix_turn_helix, Lux Regulon Ajs_4015 SM00448 cheY-homologous receiver domain Ajs_4016 SM00091 PAS domain Ajs_4016 SM00387 Histidine kinase-like ATPases Ajs_4016 SM00388 His Kinase A (phosphoacceptor) domain Ajs_4027 SM01322 Ajs_4027 Ajs_4043 SM00240 Forkhead associated domain Ajs_4044 SM00331 Sigma factor PP2C-like phosphatases Ajs_4044 SM00332 Serine/threonine phosphatases, family 2C, catalytic domain Ajs_4046 SM00881 CoA binding domain Ajs_4048 SM00859 Semialdehyde dehydrogenase, NAD binding domain Ajs_4050 SM00257 Lysin motif Ajs_4058 SM00934 Orotidine 5'-phosphate decarboxylase / HUMPS family Ajs_4062 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). Ajs_4062 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain Ajs_4082 SM00387 Histidine kinase-like ATPases Ajs_4083 SM00448 cheY-homologous receiver domain Ajs_4083 SM00862 Transcriptional regulatory protein, C terminal Ajs_4106 SM00919 Malic enzyme, NAD binding domain Ajs_4106 SM01274 Ajs_4106 Ajs_4110 SM00650 Ribosomal RNA adenine dimethylases Ajs_4119 SM00267 diguanylate cyclase Ajs_4122 SM00267 diguanylate cyclase Ajs_4123 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). Ajs_4123 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain Ajs_4127 SM00360 RNA recognition motif Ajs_4128 SM00360 RNA recognition motif Ajs_4132 SM00116 Domain in cystathionine beta-synthase and other proteins. Ajs_4137 SM00100 Cyclic nucleotide-monophosphate binding domain Ajs_4141 SM01234 Ajs_4141 Ajs_4144 SM00382 ATPases associated with a variety of cellular activities Ajs_4144 SM00760 Bacterial dnaA protein helix-turn-helix domain Ajs_4145 SM00480 DNA polymerase III beta subunit Ajs_4146 SM00387 Histidine kinase-like ATPases Ajs_4146 SM00433 TopoisomeraseII Ajs_4157 SM01126 Ajs_4157 Ajs_4158 SM00487 DEAD-like helicases superfamily Ajs_4158 SM00491 Ajs_4158 Ajs_4160 SM00479 Ajs_4160 Ajs_4162 SM00345 helix_turn_helix gluconate operon transcriptional repressor Ajs_4188 SM00421 helix_turn_helix, Lux Regulon Ajs_4188 SM00448 cheY-homologous receiver domain Ajs_4189 SM00387 Histidine kinase-like ATPases Ajs_4198 SM00857 Resolvase, N terminal domain Ajs_4213 SM00155 Phospholipase D. Active site motifs. Ajs_4217 SM00479 Ajs_4217 Ajs_4223 SM00470 ParB-like nuclease domain Ajs_4236 SM00411 bacterial (prokaryotic) histone like domain Ajs_4248 SM00493 Ajs_4248 Ajs_4249 SM00857 Resolvase, N terminal domain Ajs_4271 SM00382 ATPases associated with a variety of cellular activities Ajs_4275 SM00530 Helix-turn-helix XRE-family like proteins Ajs_4306 SM00470 ParB-like nuclease domain Ajs_4319 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain Ajs_4319 SM00437 Bacterial DNA topoisomerase I DNA-binding domain Ajs_4319 SM00493 Ajs_4319