locus-tag class description C380_00005 PF08299 Bacterial dnaA protein helix-turn-helix C380_00005 PF00308 Bacterial dnaA protein C380_00005 PF11638 DnaA N-terminal domain C380_00010 PF02768 DNA polymerase III beta subunit, C-terminal domain C380_00010 PF02767 DNA polymerase III beta subunit, central domain C380_00010 PF00712 DNA polymerase III beta subunit, N-terminal domain C380_00015 PF01751 Toprim domain C380_00015 PF00204 DNA gyrase B C380_00015 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase C380_00015 PF18053 DNA gyrase B subunit insert domain C380_00015 PF00986 DNA gyrase B subunit, carboxyl terminus C380_00030 PF00501 AMP-binding enzyme C380_00030 PF13193 AMP-binding enzyme C-terminal domain C380_00035 PF00144 Beta-lactamase C380_00040 PF17991 Thioredoxin like C-terminal domain C380_00040 PF02683 Cytochrome C biogenesis protein transmembrane region C380_00040 PF00578 AhpC/TSA family C380_00045 PF02683 Cytochrome C biogenesis protein transmembrane region C380_00045 PF17991 Thioredoxin like C-terminal domain C380_00045 PF00578 AhpC/TSA family C380_00055 PF00486 Transcriptional regulatory protein, C terminal C380_00055 PF00072 Response regulator receiver domain C380_00060 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase C380_00060 PF00672 HAMP domain C380_00060 PF00512 His Kinase A (phospho-acceptor) domain C380_00075 PF00708 Acylphosphatase C380_00085 PF03447 Homoserine dehydrogenase, NAD binding domain C380_00085 PF01842 ACT domain C380_00085 PF00742 Homoserine dehydrogenase C380_00100 PF00392 Bacterial regulatory proteins, gntR family C380_00100 PF00155 Aminotransferase class I and II C380_00105 PF12706 Beta-lactamase superfamily domain C380_00110 PF00440 Bacterial regulatory proteins, tetR family C380_00115 PF00132 Bacterial transferase hexapeptide (six repeats) C380_00120 PF00990 Diguanylate cyclase, GGDEF domain C380_00120 PF13185 GAF domain C380_00150 PF13307 Helicase C-terminal domain C380_00150 PF06733 DEAD_2 C380_00155 PF08274 PhnA Zinc-Ribbon C380_00155 PF03831 PhnA domain C380_00180 PF14480 DNA polymerase III polC-type N-terminus I C380_00180 PF00929 Exonuclease C380_00180 PF02811 PHP domain C380_00180 PF14579 Helix-hairpin-helix motif C380_00180 PF17657 Bacterial DNA polymerase III alpha subunit finger domain C380_00180 PF07733 Bacterial DNA polymerase III alpha NTPase domain C380_00180 PF11490 DNA polymerase III polC-type N-terminus II C380_00205 PF04542 Sigma-70 region 2 C380_00205 PF08281 Sigma-70, region 4 C380_00225 PF03795 YCII-related domain C380_00230 PF08502 LeuA allosteric (dimerisation) domain C380_00230 PF00682 HMGL-like C380_00235 PF00877 NlpC/P60 family C380_00240 PF13609 Gram-negative porin C380_00245 PF07746 Aromatic-ring-opening dioxygenase LigAB, LigA subunit C380_00245 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase C380_00255 PF03480 Bacterial extracellular solute-binding protein, family 7 C380_00260 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component C380_00270 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family C380_00270 PF03466 LysR substrate binding domain C380_00275 PF00793 DAHP synthetase I family C380_00285 PF00376 MerR family regulatory protein C380_00285 PF09278 MerR, DNA binding C380_00290 PF00990 Diguanylate cyclase, GGDEF domain C380_00290 PF03707 Bacterial signalling protein N terminal repeat C380_00290 PF00563 EAL domain C380_00300 PF04381 Putative exonuclease, RdgC C380_00305 PF04752 ChaC-like protein C380_00310 PF02678 Pirin C380_00310 PF17954 Quercetinase C-terminal cupin domain C380_00320 PF00378 Enoyl-CoA hydratase/isomerase C380_00325 PF00501 AMP-binding enzyme C380_00330 PF00005 ABC transporter C380_00350 PF00005 ABC transporter C380_00350 PF12399 Branched-chain amino acid ATP-binding cassette transporter C380_00355 PF00440 Bacterial regulatory proteins, tetR family C380_00355 PF16925 Tetracyclin repressor-like, C-terminal domain C380_00365 PF13657 HipA N-terminal domain C380_00365 PF07804 HipA-like C-terminal domain C380_00390 PF02384 N-6 DNA Methylase C380_00390 PF12161 HsdM N-terminal domain C380_00395 PF00376 MerR family regulatory protein C380_00395 PF09278 MerR, DNA binding C380_00405 PF00403 Heavy-metal-associated domain C380_00410 PF00672 HAMP domain C380_00410 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain C380_00410 PF02203 Tar ligand binding domain homologue C380_00420 PF00724 NADH:flavin oxidoreductase / NADH oxidase family C380_00430 PF02798 Glutathione S-transferase, N-terminal domain C380_00430 PF00043 Glutathione S-transferase, C-terminal domain C380_00435 PF00596 Class II Aldolase and Adducin N-terminal domain C380_00440 PF02627 Carboxymuconolactone decarboxylase family C380_00445 PF04542 Sigma-70 region 2 C380_00445 PF08281 Sigma-70, region 4 C380_00445 PF12680 SnoaL-like domain C380_00450 PF03692 Putative zinc- or iron-chelating domain C380_00470 PF02527 rRNA small subunit methyltransferase G C380_00475 PF01810 LysE type translocator C380_00480 PF13614 AAA domain C380_00500 PF02195 ParB-like nuclease domain C380_00500 PF17762 HTH domain found in ParB protein C380_00565 PF13276 HTH-like domain C380_00565 PF00665 Integrase core domain C380_00565 PF13333 Integrase core domain C380_00575 PF03971 Monomeric isocitrate dehydrogenase C380_00585 PF00270 DEAD/DEAH box helicase C380_00585 PF08494 DEAD/H associated C380_00585 PF00271 Helicase conserved C-terminal domain C380_00590 PF04679 ATP dependent DNA ligase C terminal region C380_00590 PF01068 ATP dependent DNA ligase domain C380_00590 PF04675 DNA ligase N terminus C380_00595 PF04675 DNA ligase N terminus C380_00595 PF04679 ATP dependent DNA ligase C terminal region C380_00595 PF01068 ATP dependent DNA ligase domain C380_00605 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle C380_00610 PF02694 Uncharacterised BCR, YnfA/UPF0060 family C380_00640 PF02913 FAD linked oxidases, C-terminal domain C380_00640 PF01565 FAD binding domain C380_00650 PF03401 Tripartite tricarboxylate transporter family receptor C380_00655 PF00135 Carboxylesterase family C380_00680 PF00528 Binding-protein-dependent transport system inner membrane component C380_00685 PF00528 Binding-protein-dependent transport system inner membrane component C380_00690 PF00005 ABC transporter C380_00705 PF01923 Cobalamin adenosyltransferase C380_00710 PF03061 Thioesterase superfamily C380_00715 PF13458 Periplasmic binding protein C380_00720 PF13336 Acetyl-CoA hydrolase/transferase C-terminal domain C380_00720 PF02550 Acetyl-CoA hydrolase/transferase N-terminal domain C380_00730 PF00860 Permease family C380_00745 PF01494 FAD binding domain C380_00765 PF02028 BCCT, betaine/carnitine/choline family transporter C380_00770 PF13193 AMP-binding enzyme C-terminal domain C380_00770 PF00501 AMP-binding enzyme C380_00775 PF03401 Tripartite tricarboxylate transporter family receptor C380_00780 PF00501 AMP-binding enzyme C380_00780 PF13193 AMP-binding enzyme C-terminal domain C380_00785 PF01066 CDP-alcohol phosphatidyltransferase C380_00790 PF02567 Phenazine biosynthesis-like protein C380_00795 PF03466 LysR substrate binding domain C380_00795 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family C380_00800 PF00072 Response regulator receiver domain C380_00800 PF00990 Diguanylate cyclase, GGDEF domain C380_00810 PF03775 Septum formation inhibitor MinC, C-terminal domain C380_00810 PF05209 Septum formation inhibitor MinC, N-terminal domain C380_00815 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain C380_00820 PF03776 Septum formation topological specificity factor MinE C380_00825 PF12805 FUSC-like inner membrane protein yccS C380_00835 PF01613 Flavin reductase like domain C380_00840 PF00561 alpha/beta hydrolase fold C380_00845 PF02698 DUF218 domain C380_00855 PF01266 FAD dependent oxidoreductase C380_00860 PF03466 LysR substrate binding domain C380_00860 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family C380_00870 PF02469 Fasciclin domain C380_00875 PF02469 Fasciclin domain C380_00890 PF03466 LysR substrate binding domain C380_00890 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family C380_00900 PF17297 Phosphoenolpyruvate carboxykinase N-terminal domain C380_00900 PF00821 Phosphoenolpyruvate carboxykinase C-terminal P-loop domain C380_00905 PF06508 Queuosine biosynthesis protein QueC C380_00915 PF13291 ACT domain C380_00915 PF00291 Pyridoxal-phosphate dependent enzyme C380_00920 PF02954 Bacterial regulatory protein, Fis family C380_00920 PF00158 Sigma-54 interaction domain C380_00925 PF00115 Cytochrome C and Quinol oxidase polypeptide I C380_00935 PF16124 RecQ zinc-binding C380_00935 PF09382 RQC domain C380_00935 PF00270 DEAD/DEAH box helicase C380_00935 PF00570 HRDC domain C380_00935 PF00271 Helicase conserved C-terminal domain C380_00955 PF03480 Bacterial extracellular solute-binding protein, family 7 C380_00960 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component C380_00965 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component C380_00970 PF09330 D-lactate dehydrogenase, membrane binding C380_00970 PF01565 FAD binding domain C380_00975 PF00171 Aldehyde dehydrogenase family C380_00980 PF00465 Iron-containing alcohol dehydrogenase C380_00985 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family C380_00985 PF03466 LysR substrate binding domain C380_00990 PF02574 Homocysteine S-methyltransferase C380_00990 PF02965 Vitamin B12 dependent methionine synthase, activation domain C380_00990 PF02310 B12 binding domain C380_00990 PF02607 B12 binding domain C380_00990 PF00809 Pterin binding enzyme C380_00995 PF01171 PP-loop family C380_01025 PF00501 AMP-binding enzyme C380_01025 PF13193 AMP-binding enzyme C-terminal domain C380_01030 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase C380_01030 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain C380_01045 PF03976 Polyphosphate kinase 2 (PPK2) C380_01075 PF02965 Vitamin B12 dependent methionine synthase, activation domain C380_01075 PF02607 B12 binding domain C380_01075 PF00809 Pterin binding enzyme C380_01075 PF02310 B12 binding domain C380_01075 PF02574 Homocysteine S-methyltransferase C380_01080 PF01042 Endoribonuclease L-PSP C380_01085 PF03466 LysR substrate binding domain C380_01085 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family C380_01090 PF00990 Diguanylate cyclase, GGDEF domain C380_01090 PF00072 Response regulator receiver domain C380_01095 PF01202 Shikimate kinase C380_01105 PF00501 AMP-binding enzyme C380_01105 PF13193 AMP-binding enzyme C-terminal domain C380_01115 PF03631 Virulence factor BrkB C380_01125 PF01979 Amidohydrolase family C380_01130 PF17938 Tetracyclin repressor-like, C-terminal domain C380_01130 PF00440 Bacterial regulatory proteins, tetR family C380_01135 PF00970 Oxidoreductase FAD-binding domain C380_01135 PF00175 Oxidoreductase NAD-binding domain C380_01140 PF11953 Domain of unknown function (DUF3470) C380_01140 PF00037 4Fe-4S binding domain C380_01145 PF00037 4Fe-4S binding domain C380_01165 PF13458 Periplasmic binding protein C380_01175 PF12399 Branched-chain amino acid ATP-binding cassette transporter C380_01175 PF00005 ABC transporter C380_01180 PF00005 ABC transporter C380_01190 PF00111 2Fe-2S iron-sulfur cluster binding domain C380_01190 PF01799 [2Fe-2S] binding domain C380_01195 PF13442 Cytochrome C oxidase, cbb3-type, subunit III C380_01195 PF00034 Cytochrome c C380_01195 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase C380_01210 PF01878 EVE domain C380_01220 PF01037 Lrp/AsnC ligand binding domain C380_01240 PF01494 FAD binding domain C380_01255 PF02627 Carboxymuconolactone decarboxylase family C380_01260 PF07519 Tannase and feruloyl esterase C380_01265 PF02771 Acyl-CoA dehydrogenase, N-terminal domain C380_01265 PF12806 Acetyl-CoA dehydrogenase C-terminal like C380_01265 PF02770 Acyl-CoA dehydrogenase, middle domain C380_01265 PF00441 Acyl-CoA dehydrogenase, C-terminal domain C380_01270 PF03401 Tripartite tricarboxylate transporter family receptor C380_01275 PF00106 short chain dehydrogenase C380_01280 PF00501 AMP-binding enzyme C380_01280 PF00668 Condensation domain C380_01280 PF00975 Thioesterase domain C380_01280 PF00550 Phosphopantetheine attachment site C380_01280 PF13193 AMP-binding enzyme C-terminal domain C380_01285 PF00378 Enoyl-CoA hydratase/isomerase C380_01315 PF03412 Peptidase C39 family C380_01315 PF00005 ABC transporter C380_01315 PF00664 ABC transporter transmembrane region C380_01320 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion C380_01320 PF00529 HlyD membrane-fusion protein of T1SS C380_01340 PF00563 EAL domain C380_01340 PF13185 GAF domain C380_01340 PF00990 Diguanylate cyclase, GGDEF domain C380_01350 PF02321 Outer membrane efflux protein C380_01355 PF13335 Magnesium chelatase, subunit ChlI C-terminal C380_01355 PF01078 Magnesium chelatase, subunit ChlI C380_01365 PF00543 Nitrogen regulatory protein P-II C380_01370 PF00909 Ammonium Transporter Family C380_01375 PF01565 FAD binding domain C380_01385 PF02754 Cysteine-rich domain C380_01385 PF13183 4Fe-4S dicluster domain C380_01390 PF00313 'Cold-shock' DNA-binding domain C380_01395 PF17516 ProQ C-terminal domain C380_01395 PF04352 ProQ/FINO family C380_01415 PF00072 Response regulator receiver domain C380_01415 PF04397 LytTr DNA-binding domain C380_01430 PF00255 Glutathione peroxidase C380_01440 PF07690 Major Facilitator Superfamily C380_01445 PF01168 Alanine racemase, N-terminal domain C380_01445 PF00842 Alanine racemase, C-terminal domain C380_01475 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle C380_01480 PF14497 Glutathione S-transferase, C-terminal domain C380_01480 PF02798 Glutathione S-transferase, N-terminal domain C380_01485 PF08546 Ketopantoate reductase PanE/ApbA C terminal C380_01485 PF02558 Ketopantoate reductase PanE/ApbA C380_01490 PF03328 HpcH/HpaI aldolase/citrate lyase family C380_01495 PF18073 Rubredoxin metal binding domain C380_01505 PF01063 Amino-transferase class IV C380_01515 PF00535 Glycosyl transferase family 2 C380_01520 PF04932 O-Antigen ligase C380_01530 PF03060 Nitronate monooxygenase C380_01535 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family C380_01535 PF03466 LysR substrate binding domain C380_01540 PF06779 Uncharacterised MFS-type transporter YbfB C380_01545 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase C380_01545 PF00512 His Kinase A (phospho-acceptor) domain C380_01545 PF00672 HAMP domain C380_01550 PF00486 Transcriptional regulatory protein, C terminal C380_01550 PF00072 Response regulator receiver domain C380_01555 PF07690 Major Facilitator Superfamily C380_01560 PF01435 Peptidase family M48 C380_01560 PF13181 Tetratricopeptide repeat C380_01565 PF00753 Metallo-beta-lactamase superfamily C380_01570 PF08447 PAS fold C380_01570 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain C380_01570 PF13426 PAS domain C380_01595 PF03372 Endonuclease/Exonuclease/phosphatase family C380_01600 PF00156 Phosphoribosyl transferase domain C380_01610 PF02934 GatB/GatE catalytic domain C380_01610 PF02637 GatB domain C380_01615 PF01425 Amidase C380_01620 PF02686 Glu-tRNAGln amidotransferase C subunit C380_01630 PF04085 rod shape-determining protein MreC C380_01635 PF04093 rod shape-determining protein MreD C380_01640 PF00905 Penicillin binding protein transpeptidase domain C380_01640 PF03717 Penicillin-binding Protein dimerisation domain C380_01650 PF00005 ABC transporter C380_01655 PF00528 Binding-protein-dependent transport system inner membrane component C380_01660 PF00497 Bacterial extracellular solute-binding proteins, family 3 C380_01665 PF01925 Sulfite exporter TauE/SafE C380_01670 PF00909 Ammonium Transporter Family C380_01685 PF05199 GMC oxidoreductase C380_01685 PF00732 GMC oxidoreductase C380_01690 PF02405 Permease MlaE C380_01695 PF00005 ABC transporter C380_01710 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain C380_01710 PF07992 Pyridine nucleotide-disulphide oxidoreductase C380_01725 PF05532 CsbD-like C380_01740 PF05230 MASE2 domain C380_01740 PF00990 Diguanylate cyclase, GGDEF domain C380_01750 PF06123 Inner membrane protein CreD C380_01760 PF00512 His Kinase A (phospho-acceptor) domain C380_01760 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase C380_01760 PF00672 HAMP domain C380_01765 PF00072 Response regulator receiver domain C380_01765 PF00486 Transcriptional regulatory protein, C terminal C380_01770 PF01914 MarC family integral membrane protein C380_01780 PF01738 Dienelactone hydrolase family C380_01790 PF01544 CorA-like Mg2+ transporter protein C380_01795 PF00490 Delta-aminolevulinic acid dehydratase C380_01815 PF02129 X-Pro dipeptidyl-peptidase (S15 family) C380_01820 PF00768 D-alanyl-D-alanine carboxypeptidase C380_01820 PF07943 Penicillin-binding protein 5, C-terminal domain C380_01825 PF00164 Ribosomal protein S12/S23 C380_01830 PF00177 Ribosomal protein S7p/S5e C380_01835 PF03144 Elongation factor Tu domain 2 C380_01835 PF00679 Elongation factor G C-terminus C380_01835 PF14492 Elongation Factor G, domain II C380_01835 PF03764 Elongation factor G, domain IV C380_01835 PF00009 Elongation factor Tu GTP binding domain C380_01840 PF03143 Elongation factor Tu C-terminal domain C380_01840 PF03144 Elongation factor Tu domain 2 C380_01840 PF00009 Elongation factor Tu GTP binding domain C380_01845 PF00338 Ribosomal protein S10p/S20e C380_01850 PF00297 Ribosomal protein L3 C380_01855 PF00573 Ribosomal protein L4/L1 family C380_01860 PF00276 Ribosomal protein L23 C380_01865 PF03947 Ribosomal Proteins L2, C-terminal domain C380_01865 PF00181 Ribosomal Proteins L2, RNA binding domain C380_01870 PF00203 Ribosomal protein S19 C380_01875 PF00237 Ribosomal protein L22p/L17e C380_01880 PF07650 KH domain C380_01880 PF00189 Ribosomal protein S3, C-terminal domain C380_01885 PF00252 Ribosomal protein L16p/L10e C380_01890 PF00831 Ribosomal L29 protein C380_01895 PF00366 Ribosomal protein S17 C380_01900 PF08534 Redoxin C380_01915 PF01322 Cytochrome C' C380_01920 PF00578 AhpC/TSA family C380_01940 PF00381 PTS HPr component phosphorylation site C380_01945 PF02896 PEP-utilising enzyme, TIM barrel domain C380_01945 PF00391 PEP-utilising enzyme, mobile domain C380_01945 PF05524 PEP-utilising enzyme, N-terminal C380_01960 PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family C380_01960 PF04055 Radical SAM superfamily C380_01965 PF03099 Biotin/lipoate A/B protein ligase family C380_01970 PF04359 Protein of unknown function (DUF493) C380_01980 PF00119 ATP synthase A chain C380_01985 PF00137 ATP synthase subunit C C380_01990 PF00430 ATP synthase B/B' CF(0) C380_01995 PF00213 ATP synthase delta (OSCP) subunit C380_02000 PF02874 ATP synthase alpha/beta family, beta-barrel domain C380_02000 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain C380_02000 PF00306 ATP synthase alpha/beta chain, C terminal domain C380_02005 PF00231 ATP synthase C380_02010 PF02874 ATP synthase alpha/beta family, beta-barrel domain C380_02010 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain C380_02015 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain C380_02060 PF13442 Cytochrome C oxidase, cbb3-type, subunit III C380_02065 PF02321 Outer membrane efflux protein C380_02070 PF00873 AcrB/AcrD/AcrF family C380_02075 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion C380_02075 PF00529 HlyD membrane-fusion protein of T1SS C380_02080 PF00440 Bacterial regulatory proteins, tetR family C380_02080 PF08361 MAATS-type transcriptional repressor, C-terminal region C380_02085 PF03144 Elongation factor Tu domain 2 C380_02085 PF03143 Elongation factor Tu C-terminal domain C380_02085 PF00009 Elongation factor Tu GTP binding domain C380_02090 PF00584 SecE/Sec61-gamma subunits of protein translocation complex C380_02095 PF00467 KOW motif C380_02095 PF02357 Transcription termination factor nusG C380_02100 PF03946 Ribosomal protein L11, N-terminal domain C380_02100 PF00298 Ribosomal protein L11, RNA binding domain C380_02105 PF00687 Ribosomal protein L1p/L10e family C380_02110 PF00466 Ribosomal protein L10 C380_02115 PF16320 Ribosomal protein L7/L12 dimerisation domain C380_02115 PF00542 Ribosomal protein L7/L12 C-terminal domain C380_02120 PF04565 RNA polymerase Rpb2, domain 3 C380_02120 PF04560 RNA polymerase Rpb2, domain 7 C380_02120 PF10385 RNA polymerase beta subunit external 1 domain C380_02120 PF04563 RNA polymerase beta subunit C380_02120 PF04561 RNA polymerase Rpb2, domain 2 C380_02120 PF00562 RNA polymerase Rpb2, domain 6 C380_02125 PF00623 RNA polymerase Rpb1, domain 2 C380_02125 PF04997 RNA polymerase Rpb1, domain 1 C380_02125 PF04983 RNA polymerase Rpb1, domain 3 C380_02125 PF05000 RNA polymerase Rpb1, domain 4 C380_02125 PF04998 RNA polymerase Rpb1, domain 5 C380_02135 PF01189 16S rRNA methyltransferase RsmB/F C380_02135 PF01029 NusB family C380_02145 PF00989 PAS fold C380_02145 PF00672 HAMP domain C380_02145 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase C380_02145 PF00512 His Kinase A (phospho-acceptor) domain C380_02150 PF00072 Response regulator receiver domain C380_02150 PF02954 Bacterial regulatory protein, Fis family C380_02150 PF00158 Sigma-54 interaction domain C380_02175 PF00589 Phage integrase family C380_02190 PF00012 Hsp70 protein C380_02195 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases C380_02200 PF02021 Uncharacterised protein family UPF0102 C380_02205 PF13580 SIS domain C380_02210 PF04972 BON domain C380_02215 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase C380_02215 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase C380_02220 PF00437 Type II/IV secretion system protein C380_02225 PF13545 Crp-like helix-turn-helix domain C380_02225 PF00027 Cyclic nucleotide-binding domain C380_02230 PF00437 Type II/IV secretion system protein C380_02235 PF01168 Alanine racemase, N-terminal domain C380_02240 PF01212 Beta-eliminating lyase C380_02245 PF13458 Periplasmic binding protein C380_02255 PF13193 AMP-binding enzyme C-terminal domain C380_02255 PF00501 AMP-binding enzyme C380_02260 PF00682 HMGL-like C380_02260 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain C380_02260 PF00364 Biotin-requiring enzyme C380_02260 PF02785 Biotin carboxylase C-terminal domain C380_02260 PF00289 Biotin carboxylase, N-terminal domain C380_02260 PF02436 Conserved carboxylase domain C380_02265 PF01810 LysE type translocator C380_02270 PF12833 Helix-turn-helix domain C380_02280 PF04286 Protein of unknown function (DUF445) C380_02285 PF04172 LrgB-like family C380_02290 PF03788 LrgA family C380_02295 PF02913 FAD linked oxidases, C-terminal domain C380_02295 PF01565 FAD binding domain C380_02300 PF03466 LysR substrate binding domain C380_02300 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family C380_02305 PF00551 Formyl transferase C380_02310 PF00990 Diguanylate cyclase, GGDEF domain C380_02310 PF00563 EAL domain C380_02310 PF03707 Bacterial signalling protein N terminal repeat C380_02320 PF00672 HAMP domain C380_02320 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase C380_02320 PF07730 Histidine kinase C380_02320 PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term C380_02325 PF00072 Response regulator receiver domain C380_02325 PF00196 Bacterial regulatory proteins, luxR family C380_02330 PF07690 Major Facilitator Superfamily C380_02335 PF07690 Major Facilitator Superfamily C380_02340 PF14710 Respiratory nitrate reductase alpha N-terminal C380_02340 PF01568 Molydopterin dinucleotide binding domain C380_02340 PF00384 Molybdopterin oxidoreductase C380_02345 PF13247 4Fe-4S dicluster domain C380_02345 PF14711 Respiratory nitrate reductase beta C-terminal C380_02350 PF02613 Nitrate reductase delta subunit C380_02355 PF02665 Nitrate reductase gamma subunit C380_02360 PF09312 SurA N-terminal domain C380_02360 PF00639 PPIC-type PPIASE domain C380_02365 PF00484 Carbonic anhydrase C380_02370 PF02867 Ribonucleotide reductase, barrel domain C380_02370 PF00317 Ribonucleotide reductase, all-alpha domain C380_02370 PF03477 ATP cone domain C380_02385 PF01814 Hemerythrin HHE cation binding domain C380_02415 PF03401 Tripartite tricarboxylate transporter family receptor C380_02425 PF00107 Zinc-binding dehydrogenase C380_02425 PF08240 Alcohol dehydrogenase GroES-like domain C380_02430 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family C380_02430 PF03466 LysR substrate binding domain C380_02435 PF00465 Iron-containing alcohol dehydrogenase C380_02450 PF00384 Molybdopterin oxidoreductase C380_02450 PF01568 Molydopterin dinucleotide binding domain C380_02450 PF04879 Molybdopterin oxidoreductase Fe4S4 domain C380_02460 PF01546 Peptidase family M20/M25/M40 C380_02460 PF07687 Peptidase dimerisation domain C380_02465 PF07687 Peptidase dimerisation domain C380_02465 PF01546 Peptidase family M20/M25/M40 C380_02490 PF03007 Wax ester synthase-like Acyl-CoA acyltransferase domain C380_02490 PF06974 Protein of unknown function (DUF1298) C380_02500 PF00682 HMGL-like C380_02505 PF02423 Ornithine cyclodeaminase/mu-crystallin family C380_02525 PF03352 Methyladenine glycosylase C380_02535 PF03960 ArsC family C380_02545 PF06299 Protein of unknown function (DUF1045) C380_02550 PF00392 Bacterial regulatory proteins, gntR family C380_02555 PF06754 Phosphonate metabolism protein PhnG C380_02560 PF05845 Bacterial phosphonate metabolism protein (PhnH) C380_02565 PF05861 Bacterial phosphonate metabolism protein (PhnI) C380_02570 PF06007 Phosphonate metabolism protein PhnJ C380_02575 PF00583 Acetyltransferase (GNAT) family C380_02580 PF00005 ABC transporter C380_02585 PF00005 ABC transporter C380_02590 PF07969 Amidohydrolase family C380_02595 PF00005 ABC transporter C380_02605 PF00528 Binding-protein-dependent transport system inner membrane component C380_02610 PF01966 HD domain C380_02615 PF01965 DJ-1/PfpI family C380_02620 PF01965 DJ-1/PfpI family C380_02630 PF00892 EamA-like transporter family C380_02635 PF01042 Endoribonuclease L-PSP C380_02640 PF00501 AMP-binding enzyme C380_02640 PF13193 AMP-binding enzyme C-terminal domain C380_02645 PF02770 Acyl-CoA dehydrogenase, middle domain C380_02645 PF00441 Acyl-CoA dehydrogenase, C-terminal domain C380_02645 PF02771 Acyl-CoA dehydrogenase, N-terminal domain C380_02650 PF00378 Enoyl-CoA hydratase/isomerase C380_02660 PF01494 FAD binding domain C380_02670 PF03401 Tripartite tricarboxylate transporter family receptor C380_02675 PF03401 Tripartite tricarboxylate transporter family receptor C380_02680 PF14535 AMP-binding enzyme C-terminal domain C380_02680 PF00501 AMP-binding enzyme C380_02685 PF00005 ABC transporter C380_02700 PF02653 Branched-chain amino acid transport system / permease component C380_02705 PF00005 ABC transporter C380_02705 PF12399 Branched-chain amino acid ATP-binding cassette transporter C380_02710 PF00501 AMP-binding enzyme C380_02715 PF13401 AAA domain C380_02715 PF01471 Putative peptidoglycan binding domain C380_02730 PF13545 Crp-like helix-turn-helix domain C380_02730 PF00027 Cyclic nucleotide-binding domain C380_02735 PF02203 Tar ligand binding domain homologue C380_02735 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain C380_02735 PF00672 HAMP domain C380_02750 PF00990 Diguanylate cyclase, GGDEF domain C380_02750 PF00563 EAL domain C380_02750 PF03707 Bacterial signalling protein N terminal repeat C380_02755 PF01479 S4 domain C380_02755 PF00849 RNA pseudouridylate synthase C380_02770 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase C380_02770 PF00183 Hsp90 protein C380_02780 PF00072 Response regulator receiver domain C380_02780 PF00486 Transcriptional regulatory protein, C terminal C380_02785 PF01636 Phosphotransferase enzyme family C380_02795 PF03793 PASTA domain C380_02795 PF00069 Protein kinase domain C380_02810 PF02566 OsmC-like protein C380_02815 PF01047 MarR family C380_02820 PF00378 Enoyl-CoA hydratase/isomerase C380_02825 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain C380_02825 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain C380_02830 PF05199 GMC oxidoreductase C380_02830 PF00732 GMC oxidoreductase C380_02850 PF01061 ABC-2 type transporter C380_02855 PF05231 MASE1 C380_02855 PF07730 Histidine kinase C380_02855 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase C380_02860 PF00196 Bacterial regulatory proteins, luxR family C380_02860 PF00072 Response regulator receiver domain C380_02870 PF00528 Binding-protein-dependent transport system inner membrane component C380_02875 PF00005 ABC transporter C380_02880 PF02560 Cyanate lyase C-terminal domain C380_02890 PF04542 Sigma-70 region 2 C380_02890 PF04545 Sigma-70, region 4 C380_02900 PF18113 Rubredoxin binding C-terminal domain C380_02900 PF07992 Pyridine nucleotide-disulphide oxidoreductase C380_02915 PF00581 Rhodanese-like domain C380_02920 PF01590 GAF domain C380_02920 PF00158 Sigma-54 interaction domain C380_02920 PF02954 Bacterial regulatory protein, Fis family C380_02930 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily C380_02935 PF00440 Bacterial regulatory proteins, tetR family C380_02935 PF08361 MAATS-type transcriptional repressor, C-terminal region C380_02940 PF02222 ATP-grasp domain C380_02945 PF03707 Bacterial signalling protein N terminal repeat C380_02945 PF00563 EAL domain C380_02945 PF00990 Diguanylate cyclase, GGDEF domain C380_02950 PF00005 ABC transporter C380_02955 PF00351 Biopterin-dependent aromatic amino acid hydroxylase C380_02960 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily C380_02970 PF00561 alpha/beta hydrolase fold C380_02975 PF01037 Lrp/AsnC ligand binding domain C380_02975 PF13404 AsnC-type helix-turn-helix domain C380_02985 PF03471 Transporter associated domain C380_02985 PF00571 CBS domain C380_02990 PF00795 Carbon-nitrogen hydrolase C380_02995 PF07977 FabA-like domain C380_03000 PF02801 Beta-ketoacyl synthase, C-terminal domain C380_03000 PF00109 Beta-ketoacyl synthase, N-terminal domain C380_03005 PF03466 LysR substrate binding domain C380_03005 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family C380_03010 PF17763 Glutaminase/Asparaginase C-terminal domain C380_03010 PF00710 Asparaginase, N-terminal C380_03015 PF02091 Glycyl-tRNA synthetase alpha subunit C380_03020 PF02092 Glycyl-tRNA synthetase beta subunit C380_03020 PF05746 DALR anticodon binding domain C380_03045 PF01476 LysM domain C380_03045 PF04972 BON domain C380_03050 PF03309 Type III pantothenate kinase C380_03070 PF00106 short chain dehydrogenase C380_03075 PF16363 GDP-mannose 4,6 dehydratase C380_03080 PF04321 RmlD substrate binding domain C380_03085 PF00483 Nucleotidyl transferase C380_03090 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase C380_03095 PF01050 Mannose-6-phosphate isomerase C380_03095 PF00483 Nucleotidyl transferase C380_03105 PF00005 ABC transporter C380_03105 PF14524 Wzt C-terminal domain C380_03115 PF00534 Glycosyl transferases group 1 C380_03115 PF13439 Glycosyltransferase Family 4 C380_03125 PF00535 Glycosyl transferase family 2 C380_03135 PF16363 GDP-mannose 4,6 dehydratase C380_03150 PF13439 Glycosyltransferase Family 4 C380_03150 PF00534 Glycosyl transferases group 1 C380_03185 PF07478 D-ala D-ala ligase C-terminus C380_03185 PF01820 D-ala D-ala ligase N-terminus C380_03195 PF00534 Glycosyl transferases group 1 C380_03215 PF00005 ABC transporter C380_03215 PF00664 ABC transporter transmembrane region C380_03220 PF00005 ABC transporter C380_03220 PF00664 ABC transporter transmembrane region C380_03225 PF00529 HlyD membrane-fusion protein of T1SS C380_03230 PF02321 Outer membrane efflux protein C380_03240 PF00696 Amino acid kinase family C380_03245 PF00072 Response regulator receiver domain C380_03245 PF00486 Transcriptional regulatory protein, C terminal C380_03250 PF00512 His Kinase A (phospho-acceptor) domain C380_03250 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase C380_03255 PF00440 Bacterial regulatory proteins, tetR family C380_03265 PF00441 Acyl-CoA dehydrogenase, C-terminal domain C380_03265 PF12806 Acetyl-CoA dehydrogenase C-terminal like C380_03265 PF02770 Acyl-CoA dehydrogenase, middle domain C380_03265 PF02771 Acyl-CoA dehydrogenase, N-terminal domain C380_03275 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain C380_03275 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain C380_03275 PF00378 Enoyl-CoA hydratase/isomerase C380_03285 PF02803 Thiolase, C-terminal domain C380_03285 PF00108 Thiolase, N-terminal domain C380_03300 PF00378 Enoyl-CoA hydratase/isomerase C380_03315 PF01039 Carboxyl transferase domain C380_03320 PF08713 DNA alkylation repair enzyme C380_03325 PF00441 Acyl-CoA dehydrogenase, C-terminal domain C380_03325 PF02770 Acyl-CoA dehydrogenase, middle domain C380_03325 PF02771 Acyl-CoA dehydrogenase, N-terminal domain C380_03330 PF00378 Enoyl-CoA hydratase/isomerase C380_03335 PF02785 Biotin carboxylase C-terminal domain C380_03335 PF00289 Biotin carboxylase, N-terminal domain C380_03335 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain C380_03335 PF00364 Biotin-requiring enzyme C380_03340 PF00441 Acyl-CoA dehydrogenase, C-terminal domain C380_03340 PF02771 Acyl-CoA dehydrogenase, N-terminal domain C380_03340 PF02770 Acyl-CoA dehydrogenase, middle domain C380_03345 PF05853 beta-keto acid cleavage enzyme C380_03360 PF00378 Enoyl-CoA hydratase/isomerase C380_03360 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain C380_03360 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain C380_03365 PF00108 Thiolase, N-terminal domain C380_03365 PF02803 Thiolase, C-terminal domain C380_03375 PF02771 Acyl-CoA dehydrogenase, N-terminal domain C380_03375 PF00441 Acyl-CoA dehydrogenase, C-terminal domain C380_03375 PF02770 Acyl-CoA dehydrogenase, middle domain C380_03385 PF00501 AMP-binding enzyme C380_03390 PF00005 ABC transporter C380_03395 PF12399 Branched-chain amino acid ATP-binding cassette transporter C380_03395 PF00005 ABC transporter C380_03405 PF02653 Branched-chain amino acid transport system / permease component C380_03410 PF00378 Enoyl-CoA hydratase/isomerase C380_03415 PF03061 Thioesterase superfamily C380_03425 PF03061 Thioesterase superfamily C380_03430 PF00005 ABC transporter C380_03430 PF00664 ABC transporter transmembrane region C380_03435 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain C380_03435 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain C380_03445 PF03480 Bacterial extracellular solute-binding protein, family 7 C380_03450 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component C380_03460 PF03466 LysR substrate binding domain C380_03460 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family C380_03465 PF00497 Bacterial extracellular solute-binding proteins, family 3 C380_03470 PF00497 Bacterial extracellular solute-binding proteins, family 3 C380_03475 PF00528 Binding-protein-dependent transport system inner membrane component C380_03480 PF00528 Binding-protein-dependent transport system inner membrane component C380_03485 PF00005 ABC transporter C380_03500 PF03401 Tripartite tricarboxylate transporter family receptor C380_03505 PF01979 Amidohydrolase family C380_03515 PF01435 Peptidase family M48 C380_03520 PF02203 Tar ligand binding domain homologue C380_03520 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain C380_03520 PF00672 HAMP domain C380_03525 PF00939 Sodium:sulfate symporter transmembrane region C380_03530 PF12852 Cupin C380_03530 PF12833 Helix-turn-helix domain C380_03535 PF01546 Peptidase family M20/M25/M40 C380_03535 PF07687 Peptidase dimerisation domain C380_03550 PF03706 Lysylphosphatidylglycerol synthase TM region C380_03555 PF13091 PLD-like domain C380_03560 PF03372 Endonuclease/Exonuclease/phosphatase family C380_03565 PF00291 Pyridoxal-phosphate dependent enzyme C380_03570 PF05189 RNA 3'-terminal phosphate cyclase (RTC), insert domain C380_03570 PF01137 RNA 3'-terminal phosphate cyclase C380_03575 PF10127 RNA repair pathway DNA polymerase beta family C380_03580 PF01139 tRNA-splicing ligase RtcB C380_03600 PF00158 Sigma-54 interaction domain C380_03600 PF06956 Regulator of RNA terminal phosphate cyclase C380_03610 PF05987 Bacterial protein of unknown function (DUF898) C380_03620 PF00753 Metallo-beta-lactamase superfamily C380_03620 PF16123 Hydroxyacylglutathione hydrolase C-terminus C380_03625 PF07690 Major Facilitator Superfamily C380_03630 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family C380_03630 PF03466 LysR substrate binding domain C380_03640 PF00043 Glutathione S-transferase, C-terminal domain C380_03640 PF02798 Glutathione S-transferase, N-terminal domain C380_03645 PF01678 Diaminopimelate epimerase C380_03655 PF00589 Phage integrase family C380_03655 PF02899 Phage integrase, N-terminal SAM-like domain C380_03660 PF10502 Signal peptidase, peptidase S26 C380_03665 PF02203 Tar ligand binding domain homologue C380_03665 PF00672 HAMP domain C380_03665 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain C380_03670 PF01584 CheW-like domain C380_03675 PF10672 S-adenosylmethionine-dependent methyltransferase C380_03675 PF17785 PUA-like domain C380_03680 PF02492 CobW/HypB/UreG, nucleotide-binding domain C380_03680 PF07683 Cobalamin synthesis protein cobW C-terminal domain C380_03685 PF01258 Prokaryotic dksA/traR C4-type zinc finger C380_03695 PF00227 Proteasome subunit C380_03700 PF07724 AAA domain (Cdc48 subfamily) C380_03700 PF00004 ATPase family associated with various cellular activities (AAA) C380_03705 PF02381 MraZ protein, putative antitoxin-like C380_03710 PF01795 MraW methylase family C380_03720 PF03717 Penicillin-binding Protein dimerisation domain C380_03720 PF00905 Penicillin binding protein transpeptidase domain C380_03725 PF02875 Mur ligase family, glutamate ligase domain C380_03725 PF08245 Mur ligase middle domain C380_03730 PF08245 Mur ligase middle domain C380_03730 PF01225 Mur ligase family, catalytic domain C380_03730 PF02875 Mur ligase family, glutamate ligase domain C380_03735 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 C380_03735 PF00953 Glycosyl transferase family 4 C380_03740 PF02875 Mur ligase family, glutamate ligase domain C380_03740 PF08245 Mur ligase middle domain C380_03745 PF01098 Cell cycle protein C380_03750 PF03033 Glycosyltransferase family 28 N-terminal domain C380_03750 PF04101 Glycosyltransferase family 28 C-terminal domain C380_03755 PF08245 Mur ligase middle domain C380_03755 PF02875 Mur ligase family, glutamate ligase domain C380_03755 PF01225 Mur ligase family, catalytic domain C380_03760 PF01820 D-ala D-ala ligase N-terminus C380_03760 PF07478 D-ala D-ala ligase C-terminus C380_03765 PF08478 POTRA domain, FtsQ-type C380_03765 PF03799 Cell division protein FtsQ C380_03770 PF02491 SHS2 domain inserted in FTSA C380_03775 PF00091 Tubulin/FtsZ family, GTPase domain C380_03775 PF12327 FtsZ family, C-terminal domain C380_03780 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain C380_03780 PF00672 HAMP domain C380_03780 PF17200 Single Cache domain 2 C380_03785 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase C380_03795 PF13667 ThiC-associated domain C380_03795 PF01964 Radical SAM ThiC family C380_03800 PF00672 HAMP domain C380_03800 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain C380_03805 PF00437 Type II/IV secretion system protein C380_03810 PF00263 Bacterial type II and III secretion system protein C380_03810 PF03958 Bacterial type II/III secretion system short domain C380_03835 PF11612 Type II secretion system (T2SS), protein J C380_03835 PF07963 Prokaryotic N-terminal methylation motif C380_03840 PF02501 Type II secretion system (T2SS), protein I C380_03840 PF07963 Prokaryotic N-terminal methylation motif C380_03850 PF07963 Prokaryotic N-terminal methylation motif C380_03850 PF08334 Type II secretion system (T2SS), protein G C380_03865 PF02654 Cobalamin-5-phosphate synthase C380_03870 PF00585 C-terminal regulatory domain of Threonine dehydratase C380_03870 PF00291 Pyridoxal-phosphate dependent enzyme C380_03875 PF02566 OsmC-like protein C380_03880 PF03232 Ubiquinone biosynthesis protein COQ7 C380_03885 PF13609 Gram-negative porin C380_03890 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle C380_03895 PF00528 Binding-protein-dependent transport system inner membrane component C380_03900 PF01546 Peptidase family M20/M25/M40 C380_03900 PF07687 Peptidase dimerisation domain C380_03915 PF12911 N-terminal TM domain of oligopeptide transport permease C C380_03915 PF00528 Binding-protein-dependent transport system inner membrane component C380_03920 PF08352 Oligopeptide/dipeptide transporter, C-terminal region C380_03920 PF00005 ABC transporter C380_03925 PF08352 Oligopeptide/dipeptide transporter, C-terminal region C380_03925 PF00005 ABC transporter C380_03930 PF03466 LysR substrate binding domain C380_03930 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family C380_03935 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain C380_03935 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain C380_03935 PF00378 Enoyl-CoA hydratase/isomerase C380_03940 PF02803 Thiolase, C-terminal domain C380_03940 PF00108 Thiolase, N-terminal domain C380_03945 PF02770 Acyl-CoA dehydrogenase, middle domain C380_03945 PF00441 Acyl-CoA dehydrogenase, C-terminal domain C380_03945 PF02771 Acyl-CoA dehydrogenase, N-terminal domain C380_03950 PF00441 Acyl-CoA dehydrogenase, C-terminal domain C380_03950 PF02770 Acyl-CoA dehydrogenase, middle domain C380_03950 PF02771 Acyl-CoA dehydrogenase, N-terminal domain C380_03955 PF00378 Enoyl-CoA hydratase/isomerase C380_03960 PF02515 CoA-transferase family III C380_03965 PF03401 Tripartite tricarboxylate transporter family receptor C380_03970 PF03401 Tripartite tricarboxylate transporter family receptor C380_03975 PF00501 AMP-binding enzyme C380_03975 PF13193 AMP-binding enzyme C-terminal domain C380_03980 PF01012 Electron transfer flavoprotein domain C380_03985 PF01012 Electron transfer flavoprotein domain C380_03985 PF00766 Electron transfer flavoprotein FAD-binding domain C380_03990 PF03401 Tripartite tricarboxylate transporter family receptor C380_03995 PF01380 SIS domain C380_03995 PF02685 Glucokinase C380_03995 PF01418 Helix-turn-helix domain, rpiR family C380_04005 PF00528 Binding-protein-dependent transport system inner membrane component C380_04010 PF08402 TOBE domain C380_04010 PF00005 ABC transporter C380_04015 PF00923 Transaldolase/Fructose-6-phosphate aldolase C380_04020 PF00512 His Kinase A (phospho-acceptor) domain C380_04020 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase C380_04020 PF08521 Two-component sensor kinase N-terminal C380_04025 PF00072 Response regulator receiver domain C380_04025 PF00486 Transcriptional regulatory protein, C terminal C380_04030 PF01547 Bacterial extracellular solute-binding protein C380_04045 PF00528 Binding-protein-dependent transport system inner membrane component C380_04050 PF08402 TOBE domain C380_04050 PF00005 ABC transporter C380_04055 PF02685 Glucokinase C380_04060 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily C380_04065 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain C380_04065 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain C380_04070 PF00342 Phosphoglucose isomerase C380_04090 PF00920 Dehydratase family C380_04095 PF01081 KDPG and KHG aldolase C380_04105 PF00118 TCP-1/cpn60 chaperonin family C380_04110 PF00166 Chaperonin 10 Kd subunit C380_04115 PF01118 Semialdehyde dehydrogenase, NAD binding domain C380_04120 PF03466 LysR substrate binding domain C380_04120 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family C380_04125 PF10399 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal C380_04125 PF00355 Rieske [2Fe-2S] domain C380_04130 PF00158 Sigma-54 interaction domain C380_04130 PF02954 Bacterial regulatory protein, Fis family C380_04130 PF01590 GAF domain C380_04135 PF00440 Bacterial regulatory proteins, tetR family C380_04135 PF08362 YcdC-like protein, C-terminal region C380_04140 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster C380_04140 PF07992 Pyridine nucleotide-disulphide oxidoreductase C380_04145 PF01180 Dihydroorotate dehydrogenase C380_04150 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin C380_04155 PF01979 Amidohydrolase family C380_04160 PF07687 Peptidase dimerisation domain C380_04160 PF01546 Peptidase family M20/M25/M40 C380_04165 PF01467 Cytidylyltransferase-like C380_04165 PF00293 NUDIX domain C380_04170 PF02540 NAD synthase C380_04170 PF00795 Carbon-nitrogen hydrolase C380_04175 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family C380_04175 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain C380_04190 PF00072 Response regulator receiver domain C380_04190 PF00990 Diguanylate cyclase, GGDEF domain C380_04205 PF00438 S-adenosylmethionine synthetase, N-terminal domain C380_04205 PF02772 S-adenosylmethionine synthetase, central domain C380_04205 PF02773 S-adenosylmethionine synthetase, C-terminal domain C380_04215 PF03279 Bacterial lipid A biosynthesis acyltransferase C380_04225 PF01926 50S ribosome-binding GTPase C380_04230 PF13442 Cytochrome C oxidase, cbb3-type, subunit III C380_04235 PF05140 ResB-like family C380_04240 PF01578 Cytochrome C assembly protein C380_04245 PF00174 Oxidoreductase molybdopterin binding domain C380_04250 PF01794 Ferric reductase like transmembrane component C380_04265 PF01491 Frataxin-like domain C380_04270 PF00905 Penicillin binding protein transpeptidase domain C380_04270 PF17092 Penicillin-binding protein OB-like domain C380_04270 PF00912 Transglycosylase C380_04305 PF01761 3-dehydroquinate synthase C380_04310 PF01966 HD domain C380_04310 PF13286 Phosphohydrolase-associated domain C380_04330 PF01493 GXGXG motif C380_04330 PF00310 Glutamine amidotransferases class-II C380_04330 PF04898 Glutamate synthase central domain C380_04330 PF01645 Conserved region in glutamate synthase C380_04335 PF07992 Pyridine nucleotide-disulphide oxidoreductase C380_04335 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster C380_04340 PF00005 ABC transporter C380_04345 PF02405 Permease MlaE C380_04350 PF02470 MlaD protein C380_04355 PF04333 MlaA lipoprotein C380_04370 PF00005 ABC transporter C380_04375 PF01061 ABC-2 type transporter C380_04380 PF01722 BolA-like protein C380_04385 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) C380_04390 PF01634 ATP phosphoribosyltransferase C380_04395 PF00815 Histidinol dehydrogenase C380_04415 PF00155 Aminotransferase class I and II C380_04420 PF00475 Imidazoleglycerol-phosphate dehydratase C380_04425 PF00117 Glutamine amidotransferase class-I C380_04430 PF00977 Histidine biosynthesis protein C380_04435 PF00977 Histidine biosynthesis protein C380_04440 PF01502 Phosphoribosyl-AMP cyclohydrolase C380_04445 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase C380_04465 PF02416 mttA/Hcf106 family C380_04470 PF02416 mttA/Hcf106 family C380_04475 PF00902 Sec-independent protein translocase protein (TatC) C380_04480 PF13180 PDZ domain C380_04480 PF17820 PDZ domain C380_04485 PF01784 NIF3 (NGG1p interacting factor 3) C380_04490 PF04166 Pyridoxal phosphate biosynthetic protein PdxA C380_04495 PF01741 Large-conductance mechanosensitive channel, MscL C380_04500 PF00355 Rieske [2Fe-2S] domain C380_04500 PF10399 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal C380_04505 PF00032 Cytochrome b(C-terminal)/b6/petD C380_04505 PF00033 Cytochrome b/b6/petB C380_04510 PF02167 Cytochrome C1 family C380_04515 PF02798 Glutathione S-transferase, N-terminal domain C380_04515 PF00043 Glutathione S-transferase, C-terminal domain C380_04520 PF04386 Stringent starvation protein B C380_04530 PF01551 Peptidase family M23 C380_04530 PF01476 LysM domain C380_04530 PF08525 Opacity-associated protein A N-terminal motif C380_04535 PF02810 SEC-C motif C380_04535 PF01043 SecA preprotein cross-linking domain C380_04535 PF07517 SecA DEAD-like domain C380_04535 PF07516 SecA Wing and Scaffold domain C380_04540 PF01960 ArgJ family C380_04550 PF00293 NUDIX domain C380_04555 PF03884 DNA gyrase inhibitor YacG C380_04560 PF07072 Cell division protein C380_04565 PF01121 Dephospho-CoA kinase C380_04570 PF06750 Bacterial Peptidase A24 N-terminal domain C380_04570 PF01478 Type IV leader peptidase family C380_04575 PF00482 Type II secretion system (T2SS), protein F C380_04580 PF00437 Type II/IV secretion system protein C380_04580 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain C380_04585 PF00348 Polyprenyl synthetase C380_04590 PF00829 Ribosomal prokaryotic L21 protein C380_04595 PF01016 Ribosomal L27 protein C380_04600 PF01926 50S ribosome-binding GTPase C380_04600 PF01018 GTP1/OBG C380_04605 PF01472 PUA domain C380_04605 PF00696 Amino acid kinase family C380_04610 PF00293 NUDIX domain C380_04615 PF04073 Aminoacyl-tRNA editing domain C380_04615 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) C380_04615 PF03129 Anticodon binding domain C380_04620 PF01464 Transglycosylase SLT domain C380_04620 PF11873 Membrane-bound lytic murein transglycosylase C, N-terminal domain C380_04625 PF01595 Cyclin M transmembrane N-terminal domain C380_04625 PF00571 CBS domain C380_04625 PF03471 Transporter associated domain C380_04630 PF02190 ATP-dependent protease La (LON) substrate-binding domain C380_04630 PF05362 Lon protease (S16) C-terminal proteolytic domain C380_04630 PF00004 ATPase family associated with various cellular activities (AAA) C380_04635 PF00462 Glutaredoxin C380_04640 PF17827 PrmC N-terminal domain C380_04640 PF05175 Methyltransferase small domain C380_04645 PF03462 PCRF domain C380_04645 PF00472 RF-1 domain C380_04650 PF01488 Shikimate / quinate 5-dehydrogenase C380_04650 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain C380_04650 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain C380_04660 PF03401 Tripartite tricarboxylate transporter family receptor C380_04665 PF03009 Glycerophosphoryl diester phosphodiesterase family C380_04675 PF17912 MalK OB fold domain C380_04675 PF00005 ABC transporter C380_04680 PF00528 Binding-protein-dependent transport system inner membrane component C380_04685 PF00528 Binding-protein-dependent transport system inner membrane component C380_04690 PF13416 Bacterial extracellular solute-binding protein C380_04695 PF01842 ACT domain C380_04695 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain C380_04695 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain C380_04715 PF01209 ubiE/COQ5 methyltransferase family C380_04730 PF03109 ABC1 family C380_04755 PF02938 GAD domain C380_04755 PF00152 tRNA synthetases class II (D, K and N) C380_04755 PF01336 OB-fold nucleic acid binding domain C380_04780 PF13091 PLD-like domain C380_04785 PF01227 GTP cyclohydrolase I C380_04810 PF00300 Histidine phosphatase superfamily (branch 1) C380_04830 PF01425 Amidase C380_04835 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle C380_04840 PF00005 ABC transporter C380_04840 PF08352 Oligopeptide/dipeptide transporter, C-terminal region C380_04845 PF08352 Oligopeptide/dipeptide transporter, C-terminal region C380_04845 PF00005 ABC transporter C380_04850 PF00528 Binding-protein-dependent transport system inner membrane component C380_04850 PF12911 N-terminal TM domain of oligopeptide transport permease C C380_04860 PF00037 4Fe-4S binding domain C380_04865 PF01195 Peptidyl-tRNA hydrolase C380_04870 PF14693 Ribosomal protein TL5, C-terminal domain C380_04870 PF01386 Ribosomal L25p family C380_04875 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase C380_04875 PF14572 Phosphoribosyl synthetase-associated domain C380_04880 PF00288 GHMP kinases N terminal domain C380_04880 PF08544 GHMP kinases C terminal C380_04885 PF03550 Outer membrane lipoprotein LolB C380_04895 PF06827 Zinc finger found in FPG and IleRS C380_04895 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain C380_04895 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain C380_04905 PF00730 HhH-GPD superfamily base excision DNA repair protein C380_04905 PF00633 Helix-hairpin-helix motif C380_04905 PF14815 NUDIX domain C380_04910 PF03668 P-loop ATPase protein family C380_04915 PF02463 RecF/RecN/SMC N terminal domain C380_04920 PF01513 ATP-NAD kinase C380_04925 PF03444 Winged helix-turn-helix transcription repressor, HrcA DNA-binding C380_04925 PF01628 HrcA protein C terminal domain C380_04930 PF01272 Transcription elongation factor, GreA/GreB, C-term C380_04930 PF03449 Transcription elongation factor, N-terminal C380_04935 PF02824 TGS domain C380_04935 PF04607 Region found in RelA / SpoT proteins C380_04935 PF13291 ACT domain C380_04940 PF01192 RNA polymerase Rpb6 C380_04945 PF00625 Guanylate kinase C380_04950 PF08340 Domain of unknown function (DUF1732) C380_04950 PF03755 YicC-like family, N-terminal region C380_04955 PF00069 Protein kinase domain C380_04955 PF03793 PASTA domain C380_04965 PF01138 3' exoribonuclease family, domain 1 C380_04965 PF03725 3' exoribonuclease family, domain 2 C380_04970 PF01725 Ham1 family C380_04975 PF06969 HemN C-terminal domain C380_04975 PF04055 Radical SAM superfamily C380_04985 PF00990 Diguanylate cyclase, GGDEF domain C380_04985 PF13188 PAS domain C380_04985 PF00563 EAL domain C380_04985 PF03707 Bacterial signalling protein N terminal repeat C380_05000 PF13333 Integrase core domain C380_05000 PF00665 Integrase core domain C380_05000 PF13276 HTH-like domain C380_05020 PF02492 CobW/HypB/UreG, nucleotide-binding domain C380_05025 PF01730 UreF C380_05030 PF02814 UreE urease accessory protein, N-terminal domain C380_05030 PF05194 UreE urease accessory protein, C-terminal domain C380_05035 PF00583 Acetyltransferase (GNAT) family C380_05040 PF01979 Amidohydrolase family C380_05040 PF00449 Urease alpha-subunit, N-terminal domain C380_05045 PF00699 Urease beta subunit C380_05050 PF04955 HupE / UreJ protein C380_05055 PF00547 Urease, gamma subunit C380_05060 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase C380_05060 PF00512 His Kinase A (phospho-acceptor) domain C380_05060 PF01627 Hpt domain C380_05060 PF00072 Response regulator receiver domain C380_05065 PF00072 Response regulator receiver domain C380_05075 PF00689 Cation transporting ATPase, C-terminus C380_05075 PF00690 Cation transporter/ATPase, N-terminus C380_05095 PF00990 Diguanylate cyclase, GGDEF domain C380_05095 PF00072 Response regulator receiver domain C380_05100 PF00111 2Fe-2S iron-sulfur cluster binding domain C380_05100 PF01799 [2Fe-2S] binding domain C380_05105 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase C380_05110 PF07690 Major Facilitator Superfamily C380_05120 PF02653 Branched-chain amino acid transport system / permease component C380_05125 PF02653 Branched-chain amino acid transport system / permease component C380_05130 PF12399 Branched-chain amino acid ATP-binding cassette transporter C380_05130 PF00005 ABC transporter C380_05135 PF00005 ABC transporter C380_05140 PF01569 PAP2 superfamily C380_05145 PF00781 Diacylglycerol kinase catalytic domain C380_05155 PF00211 Adenylate and Guanylate cyclase catalytic domain C380_05155 PF00072 Response regulator receiver domain C380_05165 PF00155 Aminotransferase class I and II C380_05190 PF01774 UreD urease accessory protein C380_05200 PF00528 Binding-protein-dependent transport system inner membrane component C380_05205 PF00005 ABC transporter C380_05215 PF02633 Creatinine amidohydrolase C380_05220 PF01042 Endoribonuclease L-PSP C380_05225 PF07969 Amidohydrolase family C380_05235 PF00111 2Fe-2S iron-sulfur cluster binding domain C380_05245 PF14437 MafB19-like deaminase C380_05275 PF01261 Xylose isomerase-like TIM barrel C380_05280 PF00561 alpha/beta hydrolase fold C380_05285 PF00596 Class II Aldolase and Adducin N-terminal domain C380_05290 PF17042 Nucleotide-binding C-terminal domain C380_05290 PF07005 Sugar-binding N-terminal domain C380_05295 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase C380_05295 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase C380_05300 PF02447 GntP family permease C380_05305 PF07729 FCD domain C380_05305 PF00392 Bacterial regulatory proteins, gntR family C380_05310 PF01734 Patatin-like phospholipase C380_05325 PF00528 Binding-protein-dependent transport system inner membrane component C380_05330 PF00005 ABC transporter C380_05340 PF00390 Malic enzyme, N-terminal domain C380_05340 PF03949 Malic enzyme, NAD binding domain C380_05340 PF01515 Phosphate acetyl/butaryl transferase C380_05345 PF00860 Permease family C380_05350 PF07729 FCD domain C380_05350 PF00392 Bacterial regulatory proteins, gntR family C380_05355 PF00375 Sodium:dicarboxylate symporter family C380_05365 PF07687 Peptidase dimerisation domain C380_05365 PF01546 Peptidase family M20/M25/M40 C380_05370 PF01546 Peptidase family M20/M25/M40 C380_05370 PF07687 Peptidase dimerisation domain C380_05380 PF00392 Bacterial regulatory proteins, gntR family C380_05380 PF07729 FCD domain C380_05385 PF00576 HIUase/Transthyretin family C380_05405 PF00990 Diguanylate cyclase, GGDEF domain C380_05405 PF00563 EAL domain C380_05405 PF13188 PAS domain C380_05405 PF03707 Bacterial signalling protein N terminal repeat C380_05410 PF13660 Domain of unknown function (DUF4147) C380_05410 PF05161 MOFRL family C380_05415 PF13609 Gram-negative porin C380_05425 PF00990 Diguanylate cyclase, GGDEF domain C380_05425 PF07694 5TMR of 5TMR-LYT C380_05430 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain C380_05430 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase C380_05435 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain C380_05435 PF00111 2Fe-2S iron-sulfur cluster binding domain C380_05435 PF01799 [2Fe-2S] binding domain C380_05435 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase C380_05440 PF03466 LysR substrate binding domain C380_05440 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family C380_05445 PF00005 ABC transporter C380_05460 PF02608 ABC transporter substrate-binding protein PnrA-like C380_05470 PF00962 Adenosine/AMP deaminase C380_05475 PF01230 HIT domain C380_05480 PF02608 ABC transporter substrate-binding protein PnrA-like C380_05485 PF01979 Amidohydrolase family C380_05495 PF00692 dUTPase C380_05505 PF00072 Response regulator receiver domain C380_05505 PF00990 Diguanylate cyclase, GGDEF domain C380_05520 PF04228 Putative neutral zinc metallopeptidase C380_05525 PF00027 Cyclic nucleotide-binding domain C380_05525 PF04960 Glutaminase C380_05525 PF01740 STAS domain C380_05530 PF01152 Bacterial-like globin C380_05535 PF04011 LemA family C380_05540 PF01435 Peptidase family M48 C380_05560 PF00149 Calcineurin-like phosphoesterase C380_05560 PF02872 5'-nucleotidase, C-terminal domain C380_05570 PF04002 RadC-like JAB domain C380_05575 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase C380_05580 PF02401 LytB protein C380_05590 PF00291 Pyridoxal-phosphate dependent enzyme C380_05590 PF13291 ACT domain C380_05595 PF02403 Seryl-tRNA synthetase N-terminal domain C380_05595 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) C380_05600 PF00376 MerR family regulatory protein C380_05600 PF09278 MerR, DNA binding C380_05620 PF07731 Multicopper oxidase C380_05620 PF07732 Multicopper oxidase C380_05635 PF00072 Response regulator receiver domain C380_05635 PF00486 Transcriptional regulatory protein, C terminal C380_05640 PF00512 His Kinase A (phospho-acceptor) domain C380_05640 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase C380_05640 PF00672 HAMP domain C380_05650 PF02049 Flagellar hook-basal body complex protein FliE C380_05665 PF00376 MerR family regulatory protein C380_05665 PF09278 MerR, DNA binding C380_05670 PF02411 MerT mercuric transport protein C380_05675 PF00403 Heavy-metal-associated domain C380_05680 PF00403 Heavy-metal-associated domain C380_05680 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain C380_05680 PF07992 Pyridine nucleotide-disulphide oxidoreductase C380_05695 PF04945 YHS domain C380_05720 PF00873 AcrB/AcrD/AcrF family C380_05725 PF13276 HTH-like domain C380_05725 PF00665 Integrase core domain C380_05745 PF02540 NAD synthase C380_05750 PF13411 MerR HTH family regulatory protein C380_05755 PF00403 Heavy-metal-associated domain C380_05760 PF01569 PAP2 superfamily C380_05765 PF01252 Signal peptidase (SPase) II C380_05770 PF00578 AhpC/TSA family C380_05775 PF04945 YHS domain C380_05790 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion C380_05795 PF00873 AcrB/AcrD/AcrF family C380_05800 PF06803 Protein of unknown function (DUF1232) C380_05805 PF16916 Dimerisation domain of Zinc Transporter C380_05805 PF01545 Cation efflux family C380_05810 PF02583 Metal-sensitive transcriptional repressor C380_05815 PF00873 AcrB/AcrD/AcrF family C380_05825 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion C380_05825 PF00529 HlyD membrane-fusion protein of T1SS C380_05830 PF02321 Outer membrane efflux protein C380_05840 PF00486 Transcriptional regulatory protein, C terminal C380_05840 PF00072 Response regulator receiver domain C380_05845 PF00672 HAMP domain C380_05845 PF00512 His Kinase A (phospho-acceptor) domain C380_05845 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase C380_05850 PF07690 Major Facilitator Superfamily C380_05855 PF00753 Metallo-beta-lactamase superfamily C380_05855 PF00581 Rhodanese-like domain C380_05875 PF02899 Phage integrase, N-terminal SAM-like domain C380_05875 PF00589 Phage integrase family C380_05880 PF00589 Phage integrase family C380_05885 PF00589 Phage integrase family C380_05885 PF02899 Phage integrase, N-terminal SAM-like domain C380_05890 PF13442 Cytochrome C oxidase, cbb3-type, subunit III C380_05925 PF08281 Sigma-70, region 4 C380_05925 PF04542 Sigma-70 region 2 C380_05940 PF03601 Conserved hypothetical protein 698 C380_05945 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family C380_05945 PF03466 LysR substrate binding domain C380_05950 PF02899 Phage integrase, N-terminal SAM-like domain C380_05950 PF00589 Phage integrase family C380_05955 PF00589 Phage integrase family C380_05960 PF00589 Phage integrase family C380_05960 PF02899 Phage integrase, N-terminal SAM-like domain C380_05965 PF17820 PDZ domain C380_05965 PF13180 PDZ domain C380_05970 PF00589 Phage integrase family C380_05970 PF02899 Phage integrase, N-terminal SAM-like domain C380_05975 PF00589 Phage integrase family C380_05980 PF02899 Phage integrase, N-terminal SAM-like domain C380_05980 PF00589 Phage integrase family C380_05990 PF00106 short chain dehydrogenase C380_06005 PF03109 ABC1 family C380_06010 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain C380_06010 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain C380_06030 PF14572 Phosphoribosyl synthetase-associated domain C380_06030 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase C380_06035 PF07831 Pyrimidine nucleoside phosphorylase C-terminal domain C380_06035 PF00591 Glycosyl transferase family, a/b domain C380_06035 PF02885 Glycosyl transferase family, helical bundle domain C380_06040 PF10996 Beta-Casp domain C380_06040 PF00753 Metallo-beta-lactamase superfamily C380_06040 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain C380_06050 PF04536 TPM domain C380_06070 PF03976 Polyphosphate kinase 2 (PPK2) C380_06095 PF09278 MerR, DNA binding C380_06095 PF00376 MerR family regulatory protein C380_06100 PF01609 Transposase DDE domain C380_06100 PF05598 Transposase domain (DUF772) C380_06125 PF02049 Flagellar hook-basal body complex protein FliE C380_06135 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase C380_06135 PF00672 HAMP domain C380_06135 PF00512 His Kinase A (phospho-acceptor) domain C380_06140 PF00072 Response regulator receiver domain C380_06140 PF00486 Transcriptional regulatory protein, C terminal C380_06155 PF07731 Multicopper oxidase C380_06155 PF07732 Multicopper oxidase C380_06170 PF00394 Multicopper oxidase C380_06170 PF07732 Multicopper oxidase C380_06170 PF07731 Multicopper oxidase C380_06175 PF05275 Copper resistance protein B precursor (CopB) C380_06180 PF01609 Transposase DDE domain C380_06180 PF05598 Transposase domain (DUF772) C380_06185 PF13333 Integrase core domain C380_06185 PF00665 Integrase core domain C380_06185 PF13276 HTH-like domain C380_06190 PF01527 Transposase C380_06220 PF00512 His Kinase A (phospho-acceptor) domain C380_06220 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase C380_06220 PF00672 HAMP domain C380_06225 PF00072 Response regulator receiver domain C380_06225 PF00486 Transcriptional regulatory protein, C terminal C380_06235 PF02321 Outer membrane efflux protein C380_06240 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion C380_06240 PF00529 HlyD membrane-fusion protein of T1SS C380_06245 PF00873 AcrB/AcrD/AcrF family C380_06275 PF09828 Chromate resistance exported protein C380_06300 PF00873 AcrB/AcrD/AcrF family C380_06325 PF13356 Arm DNA-binding domain C380_06325 PF00589 Phage integrase family C380_06330 PF13356 Arm DNA-binding domain C380_06330 PF00589 Phage integrase family C380_06380 PF00574 Clp protease C380_06385 PF00586 AIR synthase related protein, N-terminal domain C380_06385 PF02769 AIR synthase related protein, C-terminal domain C380_06395 PF00512 His Kinase A (phospho-acceptor) domain C380_06395 PF00672 HAMP domain C380_06395 PF16750 Sensor domain of 2-component histidine kinase C380_06395 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase C380_06405 PF00486 Transcriptional regulatory protein, C terminal C380_06405 PF00072 Response regulator receiver domain C380_06420 PF00579 tRNA synthetases class I (W and Y) C380_06425 PF02163 Peptidase family M50 C380_06430 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain C380_06430 PF00672 HAMP domain C380_06430 PF02203 Tar ligand binding domain homologue C380_06435 PF01300 Telomere recombination C380_06440 PF02811 PHP domain C380_06445 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain C380_06445 PF02203 Tar ligand binding domain homologue C380_06445 PF00672 HAMP domain C380_06455 PF17768 RecJ OB domain C380_06455 PF01368 DHH family C380_06455 PF02272 DHHA1 domain C380_06470 PF12704 MacB-like periplasmic core domain C380_06470 PF02687 FtsX-like permease family C380_06475 PF00005 ABC transporter C380_06480 PF13519 von Willebrand factor type A domain C380_06485 PF01882 Protein of unknown function DUF58 C380_06490 PF07726 ATPase family associated with various cellular activities (AAA) C380_06490 PF17863 AAA lid domain C380_06495 PF13180 PDZ domain C380_06495 PF00595 PDZ domain C380_06500 PF01026 TatD related DNase C380_06515 PF00437 Type II/IV secretion system protein C380_06515 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain C380_06520 PF07331 Tripartite tricarboxylate transporter TctB family C380_06525 PF01970 Tripartite tricarboxylate transporter TctA family C380_06540 PF01435 Peptidase family M48 C380_06550 PF00106 short chain dehydrogenase C380_06560 PF00563 EAL domain C380_06560 PF00990 Diguanylate cyclase, GGDEF domain C380_06560 PF03707 Bacterial signalling protein N terminal repeat C380_06565 PF00892 EamA-like transporter family C380_06570 PF00107 Zinc-binding dehydrogenase C380_06570 PF08240 Alcohol dehydrogenase GroES-like domain C380_06580 PF04321 RmlD substrate binding domain C380_06585 PF03466 LysR substrate binding domain C380_06585 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family C380_06590 PF03466 LysR substrate binding domain C380_06590 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family C380_06595 PF13593 SBF-like CPA transporter family (DUF4137) C380_06600 PF02690 Na+/Pi-cotransporter C380_06605 PF01252 Signal peptidase (SPase) II C380_06610 PF08264 Anticodon-binding domain of tRNA C380_06610 PF00133 tRNA synthetases class I (I, L, M and V) C380_06610 PF06827 Zinc finger found in FPG and IleRS C380_06615 PF06574 FAD synthetase C380_06615 PF01687 Riboflavin kinase C380_06630 PF00441 Acyl-CoA dehydrogenase, C-terminal domain C380_06630 PF02770 Acyl-CoA dehydrogenase, middle domain C380_06630 PF02771 Acyl-CoA dehydrogenase, N-terminal domain C380_06635 PF02771 Acyl-CoA dehydrogenase, N-terminal domain C380_06635 PF02770 Acyl-CoA dehydrogenase, middle domain C380_06635 PF00441 Acyl-CoA dehydrogenase, C-terminal domain C380_06640 PF04337 Protein of unknown function, DUF480 C380_06645 PF00551 Formyl transferase C380_06660 PF01189 16S rRNA methyltransferase RsmB/F C380_06660 PF01029 NusB family C380_06670 PF00471 Ribosomal protein L33 C380_06675 PF00830 Ribosomal L28 family C380_06680 PF07992 Pyridine nucleotide-disulphide oxidoreductase C380_06685 PF00027 Cyclic nucleotide-binding domain C380_06685 PF13545 Crp-like helix-turn-helix domain C380_06690 PF17854 FtsK alpha domain C380_06690 PF13491 4TM region of DNA translocase FtsK/SpoIIIE C380_06690 PF01580 FtsK/SpoIIIE family C380_06690 PF09397 Ftsk gamma domain C380_06695 PF03548 Outer membrane lipoprotein carrier protein LolA C380_06700 PF00004 ATPase family associated with various cellular activities (AAA) C380_06700 PF12002 MgsA AAA+ ATPase C terminal C380_06700 PF16193 AAA C-terminal domain C380_06705 PF00072 Response regulator receiver domain C380_06705 PF00196 Bacterial regulatory proteins, luxR family C380_06710 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase C380_06710 PF07730 Histidine kinase C380_06720 PF02653 Branched-chain amino acid transport system / permease component C380_06725 PF11862 Domain of unknown function (DUF3382) C380_06725 PF02653 Branched-chain amino acid transport system / permease component C380_06730 PF00005 ABC transporter C380_06730 PF12399 Branched-chain amino acid ATP-binding cassette transporter C380_06735 PF00005 ABC transporter C380_06745 PF01865 Protein of unknown function DUF47 C380_06750 PF01384 Phosphate transporter family C380_06765 PF00886 Ribosomal protein S16 C380_06770 PF05239 PRC-barrel domain C380_06770 PF01782 RimM N-terminal domain C380_06775 PF01746 tRNA (Guanine-1)-methyltransferase C380_06780 PF01245 Ribosomal protein L19 C380_06785 PF00293 NUDIX domain C380_06790 PF03186 CobD/Cbib protein C380_06790 PF17113 Regulatory signalling modulator protein AmpE C380_06795 PF03193 RsgA GTPase C380_06800 PF01329 Pterin 4 alpha carbinolamine dehydratase C380_06805 PF01435 Peptidase family M48 C380_06810 PF00929 Exonuclease C380_06815 PF00270 DEAD/DEAH box helicase C380_06815 PF00271 Helicase conserved C-terminal domain C380_06820 PF00990 Diguanylate cyclase, GGDEF domain C380_06825 PF07690 Major Facilitator Superfamily C380_06830 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase C380_06830 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase C380_06840 PF00478 IMP dehydrogenase / GMP reductase domain C380_06850 PF13361 UvrD-like helicase C-terminal domain C380_06850 PF00580 UvrD/REP helicase N-terminal domain C380_06870 PF01636 Phosphotransferase enzyme family C380_06880 PF01367 5'-3' exonuclease, C-terminal SAM fold C380_06880 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain C380_06880 PF00476 DNA polymerase family A C380_06880 PF01612 3'-5' exonuclease C380_06890 PF02798 Glutathione S-transferase, N-terminal domain C380_06900 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family C380_06900 PF03466 LysR substrate binding domain C380_06905 PF01266 FAD dependent oxidoreductase C380_06910 PF00497 Bacterial extracellular solute-binding proteins, family 3 C380_06920 PF00497 Bacterial extracellular solute-binding proteins, family 3 C380_06930 PF01590 GAF domain C380_06930 PF00990 Diguanylate cyclase, GGDEF domain C380_06930 PF00360 Phytochrome region C380_06930 PF00563 EAL domain C380_06935 PF01738 Dienelactone hydrolase family C380_06945 PF02374 Anion-transporting ATPase C380_06950 PF00072 Response regulator receiver domain C380_06950 PF04397 LytTr DNA-binding domain C380_06955 PF06580 Histidine kinase C380_06955 PF07694 5TMR of 5TMR-LYT C380_06960 PF14698 Argininosuccinate lyase C-terminal C380_06960 PF00206 Lyase C380_06961 PF03401 Tripartite tricarboxylate transporter family receptor C380_06975 PF00563 EAL domain C380_06975 PF03707 Bacterial signalling protein N terminal repeat C380_06975 PF00990 Diguanylate cyclase, GGDEF domain C380_06985 PF00199 Catalase C380_06985 PF06628 Catalase-related immune-responsive C380_06985 PF18011 C-terminal domain found in long catalases C380_07000 PF02142 MGS-like domain C380_07005 PF00912 Transglycosylase C380_07005 PF14814 Bifunctional transglycosylase second domain C380_07005 PF00905 Penicillin binding protein transpeptidase domain C380_07010 PF13426 PAS domain C380_07010 PF08448 PAS fold C380_07010 PF08447 PAS fold C380_07010 PF05231 MASE1 C380_07010 PF00990 Diguanylate cyclase, GGDEF domain C380_07010 PF00563 EAL domain C380_07015 PF01070 FMN-dependent dehydrogenase C380_07025 PF08281 Sigma-70, region 4 C380_07025 PF04542 Sigma-70 region 2 C380_07070 PF03466 LysR substrate binding domain C380_07070 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family C380_07075 PF00171 Aldehyde dehydrogenase family C380_07080 PF01266 FAD dependent oxidoreductase C380_07095 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain C380_07095 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain C380_07095 PF00205 Thiamine pyrophosphate enzyme, central domain C380_07100 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family C380_07100 PF03466 LysR substrate binding domain C380_07105 PF00892 EamA-like transporter family C380_07110 PF00817 impB/mucB/samB family C380_07110 PF11799 impB/mucB/samB family C-terminal domain C380_07115 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain C380_07115 PF08447 PAS fold C380_07125 PF14489 QueF-like protein C380_07125 PF14819 Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term C380_07135 PF03883 Peroxide stress protein YaaA C380_07140 PF00575 S1 RNA binding domain C380_07140 PF12111 Polyribonucleotide phosphorylase C terminal C380_07140 PF10150 Ribonuclease E/G family C380_07145 PF00849 RNA pseudouridylate synthase C380_07145 PF01479 S4 domain C380_07160 PF01343 Peptidase family S49 C380_07160 PF06965 Na+/H+ antiporter 1 C380_07165 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases C380_07170 PF02545 Maf-like protein C380_07175 PF02620 Large ribosomal RNA subunit accumulation protein YceD C380_07180 PF01783 Ribosomal L32p protein family C380_07185 PF02504 Fatty acid synthesis protein C380_07190 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal C380_07190 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C380_07195 PF00698 Acyl transferase domain C380_07205 PF00550 Phosphopantetheine attachment site C380_07210 PF00109 Beta-ketoacyl synthase, N-terminal domain C380_07210 PF02801 Beta-ketoacyl synthase, C-terminal domain C380_07220 PF08281 Sigma-70, region 4 C380_07220 PF04542 Sigma-70 region 2 C380_07235 PF13180 PDZ domain C380_07240 PF06421 GTP-binding protein LepA C-terminus C380_07240 PF00679 Elongation factor G C-terminus C380_07240 PF00009 Elongation factor Tu GTP binding domain C380_07245 PF10502 Signal peptidase, peptidase S26 C380_07255 PF14622 Ribonuclease-III-like C380_07255 PF00035 Double-stranded RNA binding motif C380_07260 PF01926 50S ribosome-binding GTPase C380_07260 PF07650 KH domain C380_07265 PF02565 Recombination protein O C terminal C380_07265 PF11967 Recombination protein O N terminal C380_07270 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ C380_07275 PF01648 4'-phosphopantetheinyl transferase superfamily C380_07280 PF00933 Glycosyl hydrolase family 3 N terminal domain C380_07290 PF00990 Diguanylate cyclase, GGDEF domain C380_07295 PF00152 tRNA synthetases class II (D, K and N) C380_07295 PF01336 OB-fold nucleic acid binding domain C380_07300 PF02397 Bacterial sugar transferase C380_07305 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family C380_07320 PF02350 UDP-N-acetylglucosamine 2-epimerase C380_07335 PF13537 Glutamine amidotransferase domain C380_07335 PF00733 Asparagine synthase C380_07340 PF13439 Glycosyltransferase Family 4 C380_07340 PF00534 Glycosyl transferases group 1 C380_07370 PF01527 Transposase C380_07375 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family C380_07380 PF00132 Bacterial transferase hexapeptide (six repeats) C380_07385 PF01408 Oxidoreductase family, NAD-binding Rossmann fold C380_07385 PF02894 Oxidoreductase family, C-terminal alpha/beta domain C380_07390 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain C380_07390 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain C380_07390 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain C380_07400 PF02719 Polysaccharide biosynthesis protein C380_07410 PF02325 YGGT family C380_07415 PF01039 Carboxyl transferase domain C380_07415 PF17848 Acetyl-coA carboxylase zinc finger domain C380_07420 PF00290 Tryptophan synthase alpha chain C380_07425 PF00291 Pyridoxal-phosphate dependent enzyme C380_07430 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase C380_07435 PF01416 tRNA pseudouridine synthase C380_07445 PF02774 Semialdehyde dehydrogenase, dimerisation domain C380_07445 PF01118 Semialdehyde dehydrogenase, NAD binding domain C380_07450 PF00180 Isocitrate/isopropylmalate dehydrogenase C380_07455 PF00694 Aconitase C-terminal domain C380_07465 PF00330 Aconitase family (aconitate hydratase) C380_07475 PF00753 Metallo-beta-lactamase superfamily C380_07475 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain C380_07475 PF10996 Beta-Casp domain C380_07480 PF00226 DnaJ domain C380_07480 PF01556 DnaJ C terminal domain C380_07480 PF00684 DnaJ central domain C380_07485 PF00012 Hsp70 protein C380_07490 PF01025 GrpE C380_07495 PF01250 Ribosomal protein S6 C380_07505 PF01084 Ribosomal protein S18 C380_07510 PF03948 Ribosomal protein L9, C-terminal domain C380_07510 PF01281 Ribosomal protein L9, N-terminal domain C380_07515 PF03796 DnaB-like helicase C terminal domain C380_07515 PF00772 DnaB-like helicase N terminal domain C380_07525 PF13638 PIN domain C380_07525 PF02562 PhoH-like protein C380_07530 PF00578 AhpC/TSA family C380_07535 PF04430 Protein of unknown function (DUF498/DUF598) C380_07540 PF00155 Aminotransferase class I and II C380_07550 PF03447 Homoserine dehydrogenase, NAD binding domain C380_07550 PF00742 Homoserine dehydrogenase C380_07550 PF01842 ACT domain C380_07560 PF14821 Threonine synthase N terminus C380_07560 PF00291 Pyridoxal-phosphate dependent enzyme C380_07565 PF03205 Molybdopterin guanine dinucleotide synthesis protein B C380_07570 PF03454 MoeA C-terminal region (domain IV) C380_07570 PF03453 MoeA N-terminal region (domain I and II) C380_07570 PF00994 Probable molybdopterin binding domain C380_07580 PF00701 Dihydrodipicolinate synthetase family C380_07600 PF02391 MoaE protein C380_07610 PF00312 Ribosomal protein S15 C380_07615 PF00575 S1 RNA binding domain C380_07615 PF00013 KH domain C380_07615 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain C380_07615 PF01138 3' exoribonuclease family, domain 1 C380_07615 PF03725 3' exoribonuclease family, domain 2 C380_07620 PF08240 Alcohol dehydrogenase GroES-like domain C380_07620 PF00698 Acyl transferase domain C380_07620 PF00107 Zinc-binding dehydrogenase C380_07620 PF16197 Ketoacyl-synthetase C-terminal extension C380_07620 PF00109 Beta-ketoacyl synthase, N-terminal domain C380_07620 PF02801 Beta-ketoacyl synthase, C-terminal domain C380_07620 PF00550 Phosphopantetheine attachment site C380_07620 PF14765 Polyketide synthase dehydratase C380_07620 PF08659 KR domain C380_07625 PF00121 Triosephosphate isomerase C380_07630 PF03840 Preprotein translocase SecG subunit C380_07635 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 C380_07640 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit C380_07645 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit C380_07650 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit C380_07660 PF10531 SLBB domain C380_07660 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit C380_07660 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region C380_07665 PF09326 NADH-ubiquinone oxidoreductase subunit G, C-terminal C380_07665 PF00384 Molybdopterin oxidoreductase C380_07665 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region C380_07670 PF00146 NADH dehydrogenase C380_07675 PF12838 4Fe-4S dicluster domain C380_07680 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 C380_07685 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L C380_07690 PF00361 Proton-conducting membrane transporter C380_07690 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus C380_07695 PF00361 Proton-conducting membrane transporter C380_07695 PF01059 NADH-ubiquinone oxidoreductase chain 4, amino terminus C380_07700 PF00361 Proton-conducting membrane transporter C380_07715 PF00005 ABC transporter C380_07715 PF00664 ABC transporter transmembrane region C380_07720 PF00005 ABC transporter C380_07720 PF12399 Branched-chain amino acid ATP-binding cassette transporter C380_07725 PF00005 ABC transporter C380_07735 PF02653 Branched-chain amino acid transport system / permease component C380_07750 PF00291 Pyridoxal-phosphate dependent enzyme C380_07755 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family C380_07755 PF03466 LysR substrate binding domain C380_07770 PF00011 Hsp20/alpha crystallin family C380_07775 PF00005 ABC transporter C380_07785 PF07690 Major Facilitator Superfamily C380_07795 PF00561 alpha/beta hydrolase fold C380_07800 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain C380_07800 PF00437 Type II/IV secretion system protein C380_07805 PF00437 Type II/IV secretion system protein C380_07810 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase C380_07810 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain C380_07815 PF03009 Glycerophosphoryl diester phosphodiesterase family C380_07825 PF08676 MutL C terminal dimerisation domain C380_07825 PF01119 DNA mismatch repair protein, C-terminal domain C380_07830 PF09335 SNARE associated Golgi protein C380_07840 PF02203 Tar ligand binding domain homologue C380_07840 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain C380_07840 PF00672 HAMP domain C380_07850 PF01520 N-acetylmuramoyl-L-alanine amidase C380_07850 PF11741 AMIN domain C380_07855 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE C380_07860 PF08331 Domain of unknown function (DUF1730) C380_07865 PF13472 GDSL-like Lipase/Acylhydrolase family C380_07875 PF03401 Tripartite tricarboxylate transporter family receptor C380_07880 PF00589 Phage integrase family C380_07880 PF02899 Phage integrase, N-terminal SAM-like domain C380_07885 PF03401 Tripartite tricarboxylate transporter family receptor C380_07890 PF03401 Tripartite tricarboxylate transporter family receptor C380_07895 PF00563 EAL domain C380_07895 PF08668 HDOD domain C380_07900 PF00563 EAL domain C380_07900 PF08668 HDOD domain C380_07905 PF04305 Protein of unknown function (DUF455) C380_07910 PF00132 Bacterial transferase hexapeptide (six repeats) C380_07915 PF01430 Hsp33 protein C380_07930 PF04977 Septum formation initiator C380_07935 PF03952 Enolase, N-terminal domain C380_07935 PF00113 Enolase, C-terminal TIM barrel domain C380_07945 PF00793 DAHP synthetase I family C380_07950 PF00117 Glutamine amidotransferase class-I C380_07950 PF06418 CTP synthase N-terminus C380_07955 PF02441 Flavoprotein C380_07955 PF04127 DNA / pantothenate metabolism flavoprotein C380_07965 PF00692 dUTPase C380_07975 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase C380_07980 PF08007 Cupin superfamily protein C380_07995 PF00753 Metallo-beta-lactamase superfamily C380_08000 PF06804 NlpB/DapX lipoprotein C380_08005 PF00701 Dihydrodipicolinate synthetase family C380_08020 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase C380_08020 PF00986 DNA gyrase B subunit, carboxyl terminus C380_08020 PF00204 DNA gyrase B C380_08020 PF01751 Toprim domain C380_08025 PF01464 Transglycosylase SLT domain C380_08030 PF00521 DNA gyrase/topoisomerase IV, subunit A C380_08035 PF00672 HAMP domain C380_08035 PF02203 Tar ligand binding domain homologue C380_08035 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain C380_08040 PF13333 Integrase core domain C380_08040 PF00665 Integrase core domain C380_08040 PF13276 HTH-like domain C380_08055 PF03772 Competence protein C380_08055 PF00753 Metallo-beta-lactamase superfamily C380_08060 PF14403 Circularly permuted ATP-grasp type 2 C380_08075 PF09905 DNA-binding protein VF530 C380_08080 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family C380_08080 PF03466 LysR substrate binding domain C380_08090 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion C380_08095 PF00873 AcrB/AcrD/AcrF family C380_08100 PF02321 Outer membrane efflux protein C380_08105 PF00155 Aminotransferase class I and II C380_08110 PF00171 Aldehyde dehydrogenase family C380_08125 PF13609 Gram-negative porin C380_08160 PF00593 TonB dependent receptor C380_08160 PF07715 TonB-dependent Receptor Plug Domain C380_08180 PF00210 Ferritin-like domain C380_08185 PF00578 AhpC/TSA family C380_08185 PF10417 C-terminal domain of 1-Cys peroxiredoxin C380_08190 PF13192 Thioredoxin domain C380_08190 PF07992 Pyridine nucleotide-disulphide oxidoreductase C380_08195 PF03618 Kinase/pyrophosphorylase C380_08200 PF00391 PEP-utilising enzyme, mobile domain C380_08200 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain C380_08200 PF02896 PEP-utilising enzyme, TIM barrel domain C380_08210 PF00474 Sodium:solute symporter family C380_08220 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase C380_08230 PF03466 LysR substrate binding domain C380_08230 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family C380_08235 PF00682 HMGL-like C380_08240 PF02515 CoA-transferase family III C380_08245 PF03401 Tripartite tricarboxylate transporter family receptor C380_08250 PF02203 Tar ligand binding domain homologue C380_08250 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain C380_08250 PF00672 HAMP domain C380_08260 PF04545 Sigma-70, region 4 C380_08260 PF03979 Sigma-70 factor, region 1.1 C380_08260 PF04542 Sigma-70 region 2 C380_08260 PF04546 Sigma-70, non-essential region C380_08260 PF00140 Sigma-70 factor, region 1.2 C380_08260 PF04539 Sigma-70 region 3 C380_08265 PF10410 DnaB-helicase binding domain of primase C380_08265 PF08278 DNA primase DnaG DnaB-binding C380_08265 PF13662 Toprim domain C380_08265 PF08275 DNA primase catalytic core, N-terminal domain C380_08265 PF01807 CHC2 zinc finger C380_08270 PF13416 Bacterial extracellular solute-binding protein C380_08275 PF03707 Bacterial signalling protein N terminal repeat C380_08275 PF00990 Diguanylate cyclase, GGDEF domain C380_08275 PF00563 EAL domain C380_08280 PF13193 AMP-binding enzyme C-terminal domain C380_08280 PF00501 AMP-binding enzyme C380_08305 PF16925 Tetracyclin repressor-like, C-terminal domain C380_08305 PF00440 Bacterial regulatory proteins, tetR family C380_08310 PF00107 Zinc-binding dehydrogenase C380_08310 PF08240 Alcohol dehydrogenase GroES-like domain C380_08325 PF09423 PhoD-like phosphatase C380_08325 PF16655 PhoD-like phosphatase, N-terminal domain C380_08330 PF00990 Diguanylate cyclase, GGDEF domain C380_08330 PF05230 MASE2 domain C380_08335 PF02801 Beta-ketoacyl synthase, C-terminal domain C380_08335 PF08659 KR domain C380_08335 PF00550 Phosphopantetheine attachment site C380_08335 PF14765 Polyketide synthase dehydratase C380_08335 PF00107 Zinc-binding dehydrogenase C380_08335 PF08240 Alcohol dehydrogenase GroES-like domain C380_08335 PF16197 Ketoacyl-synthetase C-terminal extension C380_08335 PF00109 Beta-ketoacyl synthase, N-terminal domain C380_08335 PF00698 Acyl transferase domain C380_08340 PF01975 Survival protein SurE C380_08350 PF01476 LysM domain C380_08350 PF01551 Peptidase family M23 C380_08355 PF01479 S4 domain C380_08355 PF00849 RNA pseudouridylate synthase C380_08360 PF04079 Segregation and condensation complex subunit ScpB C380_08365 PF00849 RNA pseudouridylate synthase C380_08365 PF01479 S4 domain C380_08370 PF00334 Nucleoside diphosphate kinase C380_08375 PF04055 Radical SAM superfamily C380_08390 PF04551 GcpE protein C380_08395 PF13393 Histidyl-tRNA synthetase C380_08395 PF03129 Anticodon binding domain C380_08405 PF13360 PQQ-like domain C380_08410 PF01926 50S ribosome-binding GTPase C380_08410 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal C380_08415 PF17209 Hfq protein C380_08420 PF13167 GTP-binding GTPase N-terminal C380_08420 PF16360 GTP-binding GTPase Middle Region C380_08420 PF01926 50S ribosome-binding GTPase C380_08430 PF12221 Bacterial membrane protein N terminal C380_08430 PF01145 SPFH domain / Band 7 family C380_08435 PF01145 SPFH domain / Band 7 family C380_08445 PF13393 Histidyl-tRNA synthetase C380_08450 PF00709 Adenylosuccinate synthetase C380_08465 PF01479 S4 domain C380_08465 PF00849 RNA pseudouridylate synthase C380_08505 PF00512 His Kinase A (phospho-acceptor) domain C380_08505 PF00989 PAS fold C380_08505 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase C380_08510 PF00072 Response regulator receiver domain C380_08510 PF00158 Sigma-54 interaction domain C380_08510 PF02954 Bacterial regulatory protein, Fis family C380_08520 PF03372 Endonuclease/Exonuclease/phosphatase family C380_08540 PF04055 Radical SAM superfamily C380_08570 PF00226 DnaJ domain C380_08570 PF01556 DnaJ C terminal domain C380_08570 PF00684 DnaJ central domain C380_08765 PF03592 Terminase small subunit C380_08765 PF10668 Phage terminase small subunit C380_08895 PF00186 Dihydrofolate reductase C380_08905 PF00303 Thymidylate synthase C380_08925 PF00528 Binding-protein-dependent transport system inner membrane component C380_08930 PF00528 Binding-protein-dependent transport system inner membrane component C380_08935 PF00005 ABC transporter C380_08935 PF08402 TOBE domain C380_08940 PF00106 short chain dehydrogenase C380_08945 PF01232 Mannitol dehydrogenase Rossmann domain C380_08945 PF08125 Mannitol dehydrogenase C-terminal domain C380_08950 PF12833 Helix-turn-helix domain C380_08955 PF00370 FGGY family of carbohydrate kinases, N-terminal domain C380_08955 PF02782 FGGY family of carbohydrate kinases, C-terminal domain C380_08960 PF00294 pfkB family carbohydrate kinase C380_08970 PF00696 Amino acid kinase family C380_08970 PF00583 Acetyltransferase (GNAT) family C380_08985 PF02913 FAD linked oxidases, C-terminal domain C380_08985 PF01565 FAD binding domain C380_08995 PF03631 Virulence factor BrkB C380_09005 PF00561 alpha/beta hydrolase fold C380_09005 PF08386 TAP-like protein C380_09010 PF01053 Cys/Met metabolism PLP-dependent enzyme C380_09020 PF00990 Diguanylate cyclase, GGDEF domain C380_09020 PF03707 Bacterial signalling protein N terminal repeat C380_09020 PF00563 EAL domain C380_09025 PF01264 Chorismate synthase C380_09030 PF00149 Calcineurin-like phosphoesterase C380_09040 PF03477 ATP cone domain C380_09045 PF00464 Serine hydroxymethyltransferase C380_09050 PF11873 Membrane-bound lytic murein transglycosylase C, N-terminal domain C380_09050 PF01464 Transglycosylase SLT domain C380_09060 PF13276 HTH-like domain C380_09060 PF00665 Integrase core domain C380_09060 PF13333 Integrase core domain C380_09070 PF00575 S1 RNA binding domain C380_09070 PF00773 RNB domain C380_09070 PF08206 Ribonuclease B OB domain C380_09070 PF08461 Ribonuclease R winged-helix domain C380_09070 PF17876 Cold shock domain C380_09075 PF00561 alpha/beta hydrolase fold C380_09085 PF01256 Carbohydrate kinase C380_09085 PF03853 YjeF-related protein N-terminus C380_09090 PF01266 FAD dependent oxidoreductase C380_09095 PF01425 Amidase C380_09100 PF00318 Ribosomal protein S2 C380_09105 PF00889 Elongation factor TS C380_09110 PF00696 Amino acid kinase family C380_09115 PF01765 Ribosome recycling factor C380_09120 PF01255 Putative undecaprenyl diphosphate synthase C380_09130 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain C380_09130 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase C380_09130 PF13288 DXP reductoisomerase C-terminal domain C380_09135 PF02163 Peptidase family M50 C380_09135 PF17820 PDZ domain C380_09140 PF01103 Surface antigen C380_09140 PF07244 Surface antigen variable number repeat C380_09150 PF00132 Bacterial transferase hexapeptide (six repeats) C380_09150 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD C380_09155 PF07977 FabA-like domain C380_09160 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 C380_09160 PF00132 Bacterial transferase hexapeptide (six repeats) C380_09165 PF02684 Lipid-A-disaccharide synthetase C380_09170 PF01351 Ribonuclease HII C380_09175 PF08032 RNA 2'-O ribose methyltransferase substrate binding C380_09175 PF00588 SpoU rRNA Methylase family C380_09180 PF00117 Glutamine amidotransferase class-I C380_09180 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain C380_09185 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain C380_09185 PF02142 MGS-like domain C380_09185 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain C380_09190 PF01272 Transcription elongation factor, GreA/GreB, C-term C380_09190 PF03449 Transcription elongation factor, N-terminal C380_09205 PF01985 CRS1 / YhbY (CRM) domain C380_09210 PF01728 FtsJ-like methyltransferase C380_09215 PF06480 FtsH Extracellular C380_09215 PF01434 Peptidase family M41 C380_09215 PF17862 AAA+ lid domain C380_09215 PF00004 ATPase family associated with various cellular activities (AAA) C380_09220 PF00809 Pterin binding enzyme C380_09225 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain C380_09225 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I C380_09225 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II C380_09225 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III C380_09230 PF00563 EAL domain C380_09230 PF03707 Bacterial signalling protein N terminal repeat C380_09230 PF00990 Diguanylate cyclase, GGDEF domain C380_09235 PF00563 EAL domain C380_09235 PF03707 Bacterial signalling protein N terminal repeat C380_09235 PF00990 Diguanylate cyclase, GGDEF domain C380_09250 PF13439 Glycosyltransferase Family 4 C380_09250 PF00534 Glycosyl transferases group 1 C380_09255 PF02503 Polyphosphate kinase middle domain C380_09255 PF17941 Polyphosphate kinase C-terminal domain 1 C380_09255 PF13090 Polyphosphate kinase C-terminal domain 2 C380_09255 PF13089 Polyphosphate kinase N-terminal domain C380_09270 PF02541 Ppx/GppA phosphatase family C380_09275 PF12849 PBP superfamily domain C380_09280 PF00528 Binding-protein-dependent transport system inner membrane component C380_09285 PF00528 Binding-protein-dependent transport system inner membrane component C380_09290 PF00005 ABC transporter C380_09295 PF01895 PhoU domain C380_09300 PF00486 Transcriptional regulatory protein, C terminal C380_09300 PF00072 Response regulator receiver domain C380_09305 PF00989 PAS fold C380_09305 PF00512 His Kinase A (phospho-acceptor) domain C380_09305 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase C380_09305 PF11808 Phosphate regulon sensor protein PhoR C380_09310 PF01554 MatE C380_09320 PF01197 Ribosomal protein L31 C380_09325 PF07497 Rho termination factor, RNA-binding domain C380_09325 PF07498 Rho termination factor, N-terminal domain C380_09325 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain C380_09330 PF00085 Thioredoxin C380_09340 PF00580 UvrD/REP helicase N-terminal domain C380_09340 PF13361 UvrD-like helicase C-terminal domain C380_09350 PF12168 DNA polymerase III subunits tau domain IV DnaB-binding C380_09350 PF12169 DNA polymerase III subunits gamma and tau domain III C380_09350 PF12170 DNA polymerase III tau subunit V interacting with alpha C380_09355 PF02575 YbaB/EbfC DNA-binding family C380_09360 PF13662 Toprim domain C380_09360 PF02132 RecR protein C380_09380 PF01464 Transglycosylase SLT domain C380_09380 PF01476 LysM domain C380_09385 PF00753 Metallo-beta-lactamase superfamily C380_09385 PF16123 Hydroxyacylglutathione hydrolase C-terminus C380_09395 PF00075 RNase H C380_09400 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion C380_09405 PF00873 AcrB/AcrD/AcrF family C380_09415 PF00994 Probable molybdopterin binding domain C380_09415 PF03454 MoeA C-terminal region (domain IV) C380_09415 PF03453 MoeA N-terminal region (domain I and II) C380_09425 PF12804 MobA-like NTP transferase domain C380_09430 PF04055 Radical SAM superfamily C380_09430 PF06463 Molybdenum Cofactor Synthesis C C380_09465 PF00171 Aldehyde dehydrogenase family C380_09515 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily C380_09520 PF00689 Cation transporting ATPase, C-terminus C380_09520 PF00690 Cation transporter/ATPase, N-terminus C380_09525 PF00301 Rubredoxin C380_09550 PF00072 Response regulator receiver domain C380_09550 PF00486 Transcriptional regulatory protein, C terminal C380_09555 PF08918 PhoQ Sensor C380_09555 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase C380_09560 PF00665 Integrase core domain C380_09560 PF13333 Integrase core domain C380_09560 PF13276 HTH-like domain C380_09580 PF03030 Inorganic H+ pyrophosphatase C380_09585 PF00719 Inorganic pyrophosphatase C380_09590 PF00672 HAMP domain C380_09590 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain C380_09590 PF02203 Tar ligand binding domain homologue C380_09600 PF01584 CheW-like domain C380_09605 PF02203 Tar ligand binding domain homologue C380_09605 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain C380_09605 PF00672 HAMP domain C380_09610 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain C380_09610 PF12729 Four helix bundle sensory module for signal transduction C380_09610 PF00672 HAMP domain C380_09615 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain C380_09615 PF00672 HAMP domain C380_09615 PF02203 Tar ligand binding domain homologue C380_09625 PF02540 NAD synthase C380_09625 PF00795 Carbon-nitrogen hydrolase C380_09630 PF00543 Nitrogen regulatory protein P-II C380_09635 PF03641 Possible lysine decarboxylase C380_09640 PF01219 Prokaryotic diacylglycerol kinase C380_09665 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain C380_09665 PF00205 Thiamine pyrophosphate enzyme, central domain C380_09665 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain C380_09670 PF10369 Small subunit of acetolactate synthase C380_09675 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain C380_09675 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain C380_09680 PF01066 CDP-alcohol phosphatidyltransferase C380_09685 PF08502 LeuA allosteric (dimerisation) domain C380_09685 PF00682 HMGL-like C380_09690 PF00768 D-alanyl-D-alanine carboxypeptidase C380_09695 PF09339 IclR helix-turn-helix domain C380_09695 PF01614 Bacterial transcriptional regulator C380_09700 PF04377 Arginine-tRNA-protein transferase, C terminus C380_09700 PF04376 Arginine-tRNA-protein transferase, N terminus C380_09705 PF03588 Leucyl/phenylalanyl-tRNA protein transferase C380_09955 PF00589 Phage integrase family C380_09955 PF02899 Phage integrase, N-terminal SAM-like domain C380_09970 PF01327 Polypeptide deformylase C380_09975 PF08335 GlnD PII-uridylyltransferase C380_09975 PF01966 HD domain C380_09975 PF01909 Nucleotidyltransferase domain C380_09980 PF00557 Metallopeptidase family M24 C380_09985 PF02769 AIR synthase related protein, C-terminal domain C380_09985 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain C380_09985 PF18076 Formylglycinamide ribonucleotide amidotransferase N-terminal C380_09990 PF00355 Rieske [2Fe-2S] domain C380_09995 PF13577 SnoaL-like domain C380_10000 PF00355 Rieske [2Fe-2S] domain C380_10000 PF00848 Ring hydroxylating alpha subunit (catalytic domain) C380_10005 PF00175 Oxidoreductase NAD-binding domain C380_10005 PF00111 2Fe-2S iron-sulfur cluster binding domain C380_10005 PF00970 Oxidoreductase FAD-binding domain C380_10010 PF03466 LysR substrate binding domain C380_10010 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family C380_10015 PF05661 Protein of unknown function (DUF808) C380_10020 PF03922 OmpW family C380_10025 PF10017 Histidine-specific methyltransferase, SAM-dependent C380_10030 PF03781 Sulfatase-modifying factor enzyme 1 C380_10030 PF12867 DinB superfamily C380_10035 PF01053 Cys/Met metabolism PLP-dependent enzyme C380_10040 PF00690 Cation transporter/ATPase, N-terminus C380_10040 PF00689 Cation transporting ATPase, C-terminus C380_10045 PF12392 Collagenase C380_10045 PF01136 Peptidase family U32 C380_10050 PF13458 Periplasmic binding protein C380_10060 PF00561 alpha/beta hydrolase fold C380_10065 PF17676 LD-carboxypeptidase C-terminal domain C380_10065 PF02016 LD-carboxypeptidase N-terminal domain C380_10075 PF00211 Adenylate and Guanylate cyclase catalytic domain C380_10075 PF16701 Adenylate cyclase regulatory domain C380_10080 PF01804 Penicillin amidase C380_10100 PF02771 Acyl-CoA dehydrogenase, N-terminal domain C380_10100 PF02770 Acyl-CoA dehydrogenase, middle domain C380_10100 PF00441 Acyl-CoA dehydrogenase, C-terminal domain C380_10110 PF00027 Cyclic nucleotide-binding domain C380_10110 PF13545 Crp-like helix-turn-helix domain C380_10115 PF00378 Enoyl-CoA hydratase/isomerase C380_10120 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain C380_10120 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain C380_10120 PF18321 3-hydroxybutyryl-CoA dehydrogenase reduced Rossmann-fold domain C380_10130 PF02581 Thiamine monophosphate synthase C380_10135 PF05690 Thiazole biosynthesis protein ThiG C380_10145 PF01266 FAD dependent oxidoreductase C380_10150 PF08543 Phosphomethylpyrimidine kinase C380_10160 PF07992 Pyridine nucleotide-disulphide oxidoreductase C380_10165 PF00037 4Fe-4S binding domain C380_10165 PF11953 Domain of unknown function (DUF3470) C380_10170 PF00009 Elongation factor Tu GTP binding domain C380_10175 PF01507 Phosphoadenosine phosphosulfate reductase family C380_10180 PF01507 Phosphoadenosine phosphosulfate reductase family C380_10195 PF01925 Sulfite exporter TauE/SafE C380_10200 PF01266 FAD dependent oxidoreductase C380_10200 PF05430 S-adenosyl-L-methionine-dependent methyltransferase C380_10205 PF04362 Bacterial Fe(2+) trafficking C380_10215 PF03358 NADPH-dependent FMN reductase C380_10220 PF09084 NMT1/THI5 like C380_10225 PF00296 Luciferase-like monooxygenase C380_10235 PF00528 Binding-protein-dependent transport system inner membrane component C380_10240 PF00005 ABC transporter C380_10245 PF03459 TOBE domain C380_10250 PF01272 Transcription elongation factor, GreA/GreB, C-term C380_10250 PF14760 Rnk N-terminus C380_10270 PF02668 Taurine catabolism dioxygenase TauD, TfdA family C380_10280 PF00528 Binding-protein-dependent transport system inner membrane component C380_10285 PF00528 Binding-protein-dependent transport system inner membrane component C380_10290 PF00005 ABC transporter C380_10295 PF09084 NMT1/THI5 like C380_10300 PF16385 Domain of unknown function C380_10300 PF00884 Sulfatase C380_10305 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family C380_10305 PF03466 LysR substrate binding domain C380_10315 PF03466 LysR substrate binding domain C380_10315 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family C380_10325 PF14698 Argininosuccinate lyase C-terminal C380_10325 PF00206 Lyase C380_10330 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family C380_10330 PF03466 LysR substrate binding domain C380_10340 PF00550 Phosphopantetheine attachment site C380_10340 PF00109 Beta-ketoacyl synthase, N-terminal domain C380_10340 PF14765 Polyketide synthase dehydratase C380_10340 PF16197 Ketoacyl-synthetase C-terminal extension C380_10340 PF00698 Acyl transferase domain C380_10340 PF02801 Beta-ketoacyl synthase, C-terminal domain C380_10340 PF08659 KR domain C380_10340 PF08240 Alcohol dehydrogenase GroES-like domain C380_10370 PF00512 His Kinase A (phospho-acceptor) domain C380_10370 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase C380_10370 PF00672 HAMP domain C380_10375 PF00072 Response regulator receiver domain C380_10375 PF00486 Transcriptional regulatory protein, C terminal C380_10385 PF01970 Tripartite tricarboxylate transporter TctA family C380_10400 PF02899 Phage integrase, N-terminal SAM-like domain C380_10400 PF00589 Phage integrase family C380_10405 PF00589 Phage integrase family C380_10410 PF00589 Phage integrase family C380_10410 PF02899 Phage integrase, N-terminal SAM-like domain C380_10435 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain C380_10435 PF13378 Enolase C-terminal domain-like C380_10440 PF01081 KDPG and KHG aldolase C380_10445 PF05035 2-keto-3-deoxy-galactonokinase C380_10450 PF00701 Dihydrodipicolinate synthetase family C380_10455 PF00920 Dehydratase family C380_10460 PF02653 Branched-chain amino acid transport system / permease component C380_10465 PF02653 Branched-chain amino acid transport system / permease component C380_10470 PF00005 ABC transporter C380_10475 PF02653 Branched-chain amino acid transport system / permease component C380_10480 PF00005 ABC transporter C380_10485 PF13407 Periplasmic binding protein domain C380_10490 PF13407 Periplasmic binding protein domain C380_10495 PF00171 Aldehyde dehydrogenase family C380_10500 PF03466 LysR substrate binding domain C380_10500 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family C380_10510 PF08450 SMP-30/Gluconolactonase/LRE-like region C380_10530 PF01494 FAD binding domain C380_10535 PF03401 Tripartite tricarboxylate transporter family receptor C380_10540 PF03466 LysR substrate binding domain C380_10540 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family C380_10545 PF07804 HipA-like C-terminal domain C380_10555 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family C380_10555 PF03466 LysR substrate binding domain C380_10560 PF07690 Major Facilitator Superfamily C380_10570 PF07690 Major Facilitator Superfamily C380_10575 PF00005 ABC transporter C380_10575 PF09383 NIL domain C380_10580 PF00528 Binding-protein-dependent transport system inner membrane component C380_10585 PF00583 Acetyltransferase (GNAT) family C380_10590 PF03401 Tripartite tricarboxylate transporter family receptor C380_10595 PF05161 MOFRL family C380_10595 PF13660 Domain of unknown function (DUF4147) C380_10600 PF00180 Isocitrate/isopropylmalate dehydrogenase C380_10605 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family C380_10605 PF03466 LysR substrate binding domain C380_10615 PF02627 Carboxymuconolactone decarboxylase family C380_10620 PF13411 MerR HTH family regulatory protein C380_10635 PF00575 S1 RNA binding domain C380_10635 PF17674 HHH domain C380_10635 PF16921 Tex protein YqgF-like domain C380_10635 PF09371 Tex-like protein N-terminal domain C380_10650 PF03707 Bacterial signalling protein N terminal repeat C380_10650 PF00563 EAL domain C380_10650 PF00990 Diguanylate cyclase, GGDEF domain C380_10655 PF00465 Iron-containing alcohol dehydrogenase C380_10665 PF07859 alpha/beta hydrolase fold C380_10675 PF01571 Aminomethyltransferase folate-binding domain C380_10680 PF02618 YceG-like family C380_10685 PF02223 Thymidylate kinase C380_10690 PF09115 DNA polymerase III, delta subunit, C terminal C380_10700 PF01026 TatD related DNase C380_10710 PF00005 ABC transporter C380_10710 PF00664 ABC transporter transmembrane region C380_10715 PF07676 WD40-like Beta Propeller Repeat C380_10715 PF04052 TolB amino-terminal domain C380_10720 PF00691 OmpA family C380_10730 PF00899 ThiF family C380_10790 PF04381 Putative exonuclease, RdgC C380_10875 PF01381 Helix-turn-helix C380_10880 PF05973 Phage derived protein Gp49-like (DUF891) C380_10905 PF16870 2-oxoglutarate dehydrogenase C-terminal C380_10905 PF16078 2-oxoglutarate dehydrogenase N-terminus C380_10905 PF00676 Dehydrogenase E1 component C380_10905 PF02779 Transketolase, pyrimidine binding domain C380_10910 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) C380_10910 PF00364 Biotin-requiring enzyme C380_10910 PF02817 e3 binding domain C380_10915 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain C380_10915 PF07992 Pyridine nucleotide-disulphide oxidoreductase C380_10920 PF03969 AFG1-like ATPase C380_10940 PF04851 Type III restriction enzyme, res subunit C380_10940 PF13307 Helicase C-terminal domain C380_10945 PF13525 Outer membrane lipoprotein C380_10950 PF17657 Bacterial DNA polymerase III alpha subunit finger domain C380_10950 PF02811 PHP domain C380_10950 PF07733 Bacterial DNA polymerase III alpha NTPase domain C380_10950 PF01336 OB-fold nucleic acid binding domain C380_10950 PF14579 Helix-hairpin-helix motif C380_10955 PF02617 ATP-dependent Clp protease adaptor protein ClpS C380_10960 PF17871 AAA lid domain C380_10960 PF00004 ATPase family associated with various cellular activities (AAA) C380_10960 PF02861 Clp amino terminal domain, pathogenicity island component C380_10960 PF10431 C-terminal, D2-small domain, of ClpB protein C380_10960 PF07724 AAA domain (Cdc48 subfamily) C380_10965 PF05170 AsmA family C380_10970 PF00849 RNA pseudouridylate synthase C380_10975 PF00171 Aldehyde dehydrogenase family C380_10980 PF00528 Binding-protein-dependent transport system inner membrane component C380_10985 PF00528 Binding-protein-dependent transport system inner membrane component C380_10995 PF08402 TOBE domain C380_10995 PF00005 ABC transporter C380_11000 PF00202 Aminotransferase class-III C380_11005 PF00155 Aminotransferase class I and II C380_11010 PF00392 Bacterial regulatory proteins, gntR family C380_11010 PF07729 FCD domain C380_11015 PF03480 Bacterial extracellular solute-binding protein, family 7 C380_11020 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component C380_11030 PF07992 Pyridine nucleotide-disulphide oxidoreductase C380_11030 PF04324 BFD-like [2Fe-2S] binding domain C380_11040 PF01266 FAD dependent oxidoreductase C380_11040 PF05430 S-adenosyl-L-methionine-dependent methyltransferase C380_11045 PF05544 Proline racemase C380_11050 PF00701 Dihydrodipicolinate synthetase family C380_11055 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain C380_11055 PF01411 tRNA synthetases class II (A) C380_11055 PF02272 DHHA1 domain C380_11060 PF01966 HD domain C380_11065 PF08448 PAS fold C380_11065 PF00990 Diguanylate cyclase, GGDEF domain C380_11070 PF02390 Putative methyltransferase C380_11075 PF00749 tRNA synthetases class I (E and Q), catalytic domain C380_11080 PF01266 FAD dependent oxidoreductase C380_11080 PF05430 S-adenosyl-L-methionine-dependent methyltransferase C380_11085 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family C380_11085 PF03466 LysR substrate binding domain C380_11090 PF02678 Pirin C380_11090 PF17954 Quercetinase C-terminal cupin domain C380_11095 PF07681 DoxX C380_11100 PF03358 NADPH-dependent FMN reductase C380_11110 PF02678 Pirin C380_11110 PF05726 Pirin C-terminal cupin domain C380_11120 PF10609 NUBPL iron-transfer P-loop NTPase C380_11125 PF00072 Response regulator receiver domain C380_11125 PF00990 Diguanylate cyclase, GGDEF domain C380_11130 PF00916 Sulfate permease family C380_11130 PF01740 STAS domain C380_11140 PF01053 Cys/Met metabolism PLP-dependent enzyme C380_11150 PF13472 GDSL-like Lipase/Acylhydrolase family C380_11155 PF00005 ABC transporter C380_11160 PF00588 SpoU rRNA Methylase family C380_11160 PF08032 RNA 2'-O ribose methyltransferase substrate binding C380_11165 PF02146 Sir2 family C380_11185 PF02417 Chromate transporter C380_11190 PF01557 Fumarylacetoacetate (FAA) hydrolase family C380_11205 PF07804 HipA-like C-terminal domain C380_11205 PF13657 HipA N-terminal domain C380_11215 PF03466 LysR substrate binding domain C380_11215 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family C380_11220 PF00291 Pyridoxal-phosphate dependent enzyme C380_11225 PF03401 Tripartite tricarboxylate transporter family receptor C380_11230 PF01425 Amidase C380_11235 PF01266 FAD dependent oxidoreductase C380_11245 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain C380_11245 PF07992 Pyridine nucleotide-disulphide oxidoreductase C380_11250 PF09186 Domain of unknown function (DUF1949) C380_11250 PF01205 Uncharacterized protein family UPF0029 C380_11265 PF01047 MarR family C380_11265 PF00583 Acetyltransferase (GNAT) family C380_11270 PF11842 Domain of unknown function (DUF3362) C380_11270 PF04055 Radical SAM superfamily C380_11270 PF08497 Radical SAM N-terminal C380_11285 PF02515 CoA-transferase family III C380_11290 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase C380_11300 PF00155 Aminotransferase class I and II C380_11310 PF02082 Transcriptional regulator C380_11315 PF00266 Aminotransferase class-V C380_11320 PF01592 NifU-like N terminal domain C380_11325 PF01521 Iron-sulphur cluster biosynthesis C380_11330 PF07743 HSCB C-terminal oligomerisation domain C380_11335 PF00012 Hsp70 protein C380_11340 PF00111 2Fe-2S iron-sulfur cluster binding domain C380_11345 PF00929 Exonuclease C380_11350 PF00850 Histone deacetylase domain C380_11355 PF01266 FAD dependent oxidoreductase C380_11375 PF01180 Dihydroorotate dehydrogenase C380_11380 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) C380_11390 PF01432 Peptidase family M3 C380_11395 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain C380_11395 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain C380_11400 PF00072 Response regulator receiver domain C380_11400 PF00196 Bacterial regulatory proteins, luxR family C380_11405 PF00512 His Kinase A (phospho-acceptor) domain C380_11405 PF00989 PAS fold C380_11405 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase C380_11410 PF00456 Transketolase, thiamine diphosphate binding domain C380_11410 PF17831 Pyruvate dehydrogenase E1 component middle domain C380_11415 PF02817 e3 binding domain C380_11415 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) C380_11415 PF00364 Biotin-requiring enzyme C380_11420 PF07992 Pyridine nucleotide-disulphide oxidoreductase C380_11420 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain C380_11430 PF00696 Amino acid kinase family C380_11430 PF13840 ACT domain C380_11435 PF17042 Nucleotide-binding C-terminal domain C380_11435 PF07005 Sugar-binding N-terminal domain C380_11440 PF00016 Ribulose bisphosphate carboxylase large chain, catalytic domain C380_11440 PF02788 Ribulose bisphosphate carboxylase large chain, N-terminal domain C380_11455 PF00005 ABC transporter C380_11460 PF00528 Binding-protein-dependent transport system inner membrane component C380_11465 PF00528 Binding-protein-dependent transport system inner membrane component C380_11475 PF00892 EamA-like transporter family C380_11480 PF03466 LysR substrate binding domain C380_11480 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family C380_11485 PF00455 DeoR C terminal sensor domain C380_11485 PF08220 DeoR-like helix-turn-helix domain C380_11490 PF00293 NUDIX domain C380_11495 PF01804 Penicillin amidase C380_11500 PF12833 Helix-turn-helix domain C380_11500 PF02311 AraC-like ligand binding domain C380_11505 PF10672 S-adenosylmethionine-dependent methyltransferase C380_11505 PF17785 PUA-like domain C380_11515 PF03707 Bacterial signalling protein N terminal repeat C380_11515 PF00990 Diguanylate cyclase, GGDEF domain C380_11515 PF00563 EAL domain C380_11530 PF13532 2OG-Fe(II) oxygenase superfamily C380_11535 PF09859 Oxygenase, catalysing oxidative methylation of damaged DNA C380_11540 PF12833 Helix-turn-helix domain C380_11540 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain C380_11540 PF02805 Metal binding domain of Ada C380_11540 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain C380_11545 PF04434 SWIM zinc finger C380_11545 PF00176 SNF2 family N-terminal domain C380_11545 PF00271 Helicase conserved C-terminal domain C380_11560 PF03401 Tripartite tricarboxylate transporter family receptor C380_11565 PF07519 Tannase and feruloyl esterase C380_11590 PF00877 NlpC/P60 family C380_11595 PF07995 Glucose / Sorbosone dehydrogenase C380_11600 PF02885 Glycosyl transferase family, helical bundle domain C380_11600 PF00591 Glycosyl transferase family, a/b domain C380_11600 PF07831 Pyrimidine nucleoside phosphorylase C-terminal domain C380_11605 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase C380_11605 PF14572 Phosphoribosyl synthetase-associated domain C380_11610 PF03466 LysR substrate binding domain C380_11610 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family C380_11615 PF07690 Major Facilitator Superfamily C380_11620 PF01546 Peptidase family M20/M25/M40 C380_11620 PF07687 Peptidase dimerisation domain C380_11625 PF04960 Glutaminase C380_11645 PF00501 AMP-binding enzyme C380_11645 PF16177 Acetyl-coenzyme A synthetase N-terminus C380_11645 PF13193 AMP-binding enzyme C-terminal domain C380_11655 PF00990 Diguanylate cyclase, GGDEF domain C380_11655 PF00563 EAL domain C380_11655 PF03707 Bacterial signalling protein N terminal repeat C380_11665 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain C380_11665 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain C380_11670 PF00730 HhH-GPD superfamily base excision DNA repair protein C380_11670 PF12833 Helix-turn-helix domain C380_11670 PF02805 Metal binding domain of Ada C380_11670 PF06029 AlkA N-terminal domain C380_11675 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain C380_11675 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III C380_11675 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II C380_11675 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I C380_11685 PF00534 Glycosyl transferases group 1 C380_11685 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) C380_11690 PF02321 Outer membrane efflux protein C380_11705 PF00873 AcrB/AcrD/AcrF family C380_11710 PF13340 Putative transposase of IS4/5 family (DUF4096) C380_11720 PF00873 AcrB/AcrD/AcrF family C380_11730 PF00440 Bacterial regulatory proteins, tetR family C380_11730 PF17922 Tetracyclin repressor-like, C-terminal domain C380_11735 PF00392 Bacterial regulatory proteins, gntR family C380_11735 PF07702 UTRA domain C380_11740 PF13458 Periplasmic binding protein C380_11745 PF02653 Branched-chain amino acid transport system / permease component C380_11750 PF02653 Branched-chain amino acid transport system / permease component C380_11750 PF11862 Domain of unknown function (DUF3382) C380_11755 PF00005 ABC transporter C380_11755 PF12399 Branched-chain amino acid ATP-binding cassette transporter C380_11760 PF00005 ABC transporter C380_11765 PF03401 Tripartite tricarboxylate transporter family receptor C380_11770 PF00330 Aconitase family (aconitate hydratase) C380_11775 PF00694 Aconitase C-terminal domain C380_11780 PF02538 Hydantoinase B/oxoprolinase C380_11785 PF01968 Hydantoinase/oxoprolinase C380_11785 PF05378 Hydantoinase/oxoprolinase N-terminal region C380_11795 PF01494 FAD binding domain C380_11805 PF01625 Peptide methionine sulfoxide reductase C380_11815 PF00005 ABC transporter C380_11840 PF07715 TonB-dependent Receptor Plug Domain C380_11840 PF00593 TonB dependent receptor C380_11845 PF00990 Diguanylate cyclase, GGDEF domain C380_11845 PF00563 EAL domain C380_11845 PF03707 Bacterial signalling protein N terminal repeat C380_11850 PF00005 ABC transporter C380_11850 PF03459 TOBE domain C380_11855 PF00528 Binding-protein-dependent transport system inner membrane component C380_11865 PF03459 TOBE domain C380_11865 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family C380_11875 PF00072 Response regulator receiver domain C380_11875 PF00486 Transcriptional regulatory protein, C terminal C380_11880 PF08521 Two-component sensor kinase N-terminal C380_11880 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase C380_11880 PF00512 His Kinase A (phospho-acceptor) domain C380_11885 PF00005 ABC transporter C380_11885 PF08402 TOBE domain C380_11905 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region C380_11905 PF01243 Pyridoxamine 5'-phosphate oxidase C380_11910 PF08359 YsiA-like protein, C-terminal region C380_11910 PF00440 Bacterial regulatory proteins, tetR family C380_11915 PF00111 2Fe-2S iron-sulfur cluster binding domain C380_11915 PF01799 [2Fe-2S] binding domain C380_11920 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase C380_11935 PF01070 FMN-dependent dehydrogenase C380_11945 PF14602 Hexapeptide repeat of succinyl-transferase C380_11945 PF12804 MobA-like NTP transferase domain C380_11945 PF00132 Bacterial transferase hexapeptide (six repeats) C380_11950 PF00080 Copper/zinc superoxide dismutase (SODC) C380_11965 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily C380_12000 PF00916 Sulfate permease family C380_12000 PF01740 STAS domain C380_12005 PF00753 Metallo-beta-lactamase superfamily C380_12005 PF04273 Putative phosphatase (DUF442) C380_12015 PF04143 Sulphur transport C380_12025 PF00753 Metallo-beta-lactamase superfamily C380_12030 PF00581 Rhodanese-like domain C380_12050 PF00672 HAMP domain C380_12050 PF01627 Hpt domain C380_12050 PF00512 His Kinase A (phospho-acceptor) domain C380_12050 PF00072 Response regulator receiver domain C380_12050 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) C380_12050 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase C380_12055 PF00072 Response regulator receiver domain C380_12060 PF06968 Biotin and Thiamin Synthesis associated domain C380_12060 PF04055 Radical SAM superfamily C380_12080 PF00289 Biotin carboxylase, N-terminal domain C380_12080 PF02785 Biotin carboxylase C-terminal domain C380_12080 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain C380_12085 PF01039 Carboxyl transferase domain C380_12100 PF07729 FCD domain C380_12100 PF00392 Bacterial regulatory proteins, gntR family C380_12105 PF00501 AMP-binding enzyme C380_12115 PF01037 Lrp/AsnC ligand binding domain C380_12115 PF13404 AsnC-type helix-turn-helix domain C380_12125 PF00487 Fatty acid desaturase C380_12140 PF03354 Phage Terminase C380_12195 PF00589 Phage integrase family C380_12200 PF01207 Dihydrouridine synthase (Dus) C380_12210 PF00563 EAL domain C380_12210 PF00990 Diguanylate cyclase, GGDEF domain C380_12210 PF03707 Bacterial signalling protein N terminal repeat C380_12225 PF04060 Putative Fe-S cluster C380_12230 PF00672 HAMP domain C380_12230 PF02203 Tar ligand binding domain homologue C380_12230 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain C380_12235 PF00155 Aminotransferase class I and II C380_12240 PF14602 Hexapeptide repeat of succinyl-transferase C380_12240 PF14805 Tetrahydrodipicolinate N-succinyltransferase N-terminal C380_12245 PF00437 Type II/IV secretion system protein C380_12250 PF07687 Peptidase dimerisation domain C380_12250 PF01546 Peptidase family M20/M25/M40 C380_12255 PF05175 Methyltransferase small domain C380_12265 PF00106 short chain dehydrogenase C380_12270 PF13426 PAS domain C380_12270 PF00990 Diguanylate cyclase, GGDEF domain C380_12270 PF00563 EAL domain C380_12275 PF00665 Integrase core domain C380_12275 PF13333 Integrase core domain C380_12275 PF13276 HTH-like domain C380_12285 PF00108 Thiolase, N-terminal domain C380_12285 PF02803 Thiolase, C-terminal domain C380_12290 PF07167 Poly-beta-hydroxybutyrate polymerase (PhaC) N-terminus C380_12305 PF13417 Glutathione S-transferase, N-terminal domain C380_12315 PF01557 Fumarylacetoacetate (FAA) hydrolase family C380_12330 PF00912 Transglycosylase C380_12330 PF00905 Penicillin binding protein transpeptidase domain C380_12330 PF17092 Penicillin-binding protein OB-like domain C380_12335 PF12826 Helix-hairpin-helix motif C380_12335 PF00533 BRCA1 C Terminus (BRCT) domain C380_12335 PF03119 NAD-dependent DNA ligase C4 zinc finger domain C380_12335 PF01653 NAD-dependent DNA ligase adenylation domain C380_12335 PF03120 NAD-dependent DNA ligase OB-fold domain C380_12345 PF02463 RecF/RecN/SMC N terminal domain C380_12345 PF06470 SMC proteins Flexible Hinge Domain C380_12350 PF08448 PAS fold C380_12350 PF00990 Diguanylate cyclase, GGDEF domain C380_12355 PF00990 Diguanylate cyclase, GGDEF domain C380_12355 PF00563 EAL domain C380_12355 PF03707 Bacterial signalling protein N terminal repeat C380_12360 PF01381 Helix-turn-helix C380_12360 PF09856 Predicted transcriptional regulator (DUF2083) C380_12360 PF06114 IrrE N-terminal-like domain C380_12370 PF00285 Citrate synthase, C-terminal domain C380_12375 PF00330 Aconitase family (aconitate hydratase) C380_12375 PF00694 Aconitase C-terminal domain C380_12380 PF04303 PrpF protein C380_12390 PF03707 Bacterial signalling protein N terminal repeat C380_12390 PF00563 EAL domain C380_12390 PF00990 Diguanylate cyclase, GGDEF domain C380_12405 PF00005 ABC transporter C380_12405 PF00664 ABC transporter transmembrane region C380_12425 PF03401 Tripartite tricarboxylate transporter family receptor C380_12430 PF10282 Lactonase, 7-bladed beta-propeller C380_12435 PF03401 Tripartite tricarboxylate transporter family receptor C380_12440 PF00701 Dihydrodipicolinate synthetase family C380_12450 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain C380_12450 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain C380_12455 PF01546 Peptidase family M20/M25/M40 C380_12455 PF07687 Peptidase dimerisation domain C380_12460 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family C380_12460 PF03466 LysR substrate binding domain C380_12470 PF03466 LysR substrate binding domain C380_12470 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family C380_12475 PF01717 Cobalamin-independent synthase, Catalytic domain C380_12475 PF08267 Cobalamin-independent synthase, N-terminal domain C380_12480 PF02558 Ketopantoate reductase PanE/ApbA C380_12480 PF08546 Ketopantoate reductase PanE/ApbA C terminal C380_12490 PF02321 Outer membrane efflux protein C380_12495 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion C380_12495 PF00529 HlyD membrane-fusion protein of T1SS C380_12500 PF07690 Major Facilitator Superfamily C380_12510 PF00512 His Kinase A (phospho-acceptor) domain C380_12510 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) C380_12510 PF00672 HAMP domain C380_12510 PF01627 Hpt domain C380_12510 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase C380_12510 PF00072 Response regulator receiver domain C380_12525 PF00293 NUDIX domain C380_12540 PF01494 FAD binding domain C380_12545 PF07883 Cupin domain C380_12550 PF01557 Fumarylacetoacetate (FAA) hydrolase family C380_12555 PF13417 Glutathione S-transferase, N-terminal domain C380_12560 PF03401 Tripartite tricarboxylate transporter family receptor C380_12565 PF00171 Aldehyde dehydrogenase family C380_12575 PF02771 Acyl-CoA dehydrogenase, N-terminal domain C380_12575 PF00441 Acyl-CoA dehydrogenase, C-terminal domain C380_12575 PF02770 Acyl-CoA dehydrogenase, middle domain C380_12590 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase C380_12590 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase C380_12595 PF03707 Bacterial signalling protein N terminal repeat C380_12595 PF00990 Diguanylate cyclase, GGDEF domain C380_12595 PF00563 EAL domain C380_12600 PF00072 Response regulator receiver domain C380_12605 PF01627 Hpt domain C380_12605 PF00512 His Kinase A (phospho-acceptor) domain C380_12605 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase C380_12605 PF00672 HAMP domain C380_12605 PF00072 Response regulator receiver domain C380_12605 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) C380_12610 PF00180 Isocitrate/isopropylmalate dehydrogenase C380_12625 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain C380_12625 PF02777 Iron/manganese superoxide dismutases, C-terminal domain C380_12630 PF02601 Exonuclease VII, large subunit C380_12630 PF13742 OB-fold nucleic acid binding domain C380_12635 PF01618 MotA/TolQ/ExbB proton channel family C380_12640 PF02472 Biopolymer transport protein ExbD/TolR C380_12645 PF02606 Tetraacyldisaccharide-1-P 4'-kinase C380_12645 PF03966 Trm112p-like protein C380_12650 PF03966 Trm112p-like protein C380_12655 PF02348 Cytidylyltransferase C380_12660 PF05191 Adenylate kinase, active site lid C380_12675 PF17763 Glutaminase/Asparaginase C-terminal domain C380_12675 PF00710 Asparaginase, N-terminal C380_12680 PF00717 Peptidase S24-like C380_12680 PF01726 LexA DNA binding domain C380_12685 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain C380_12685 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain C380_12690 PF00665 Integrase core domain C380_12690 PF13276 HTH-like domain C380_12690 PF13333 Integrase core domain C380_12700 PF13458 Periplasmic binding protein C380_12715 PF02789 Cytosol aminopeptidase family, N-terminal domain C380_12715 PF00883 Cytosol aminopeptidase family, catalytic domain C380_12735 PF03466 LysR substrate binding domain C380_12735 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family C380_12740 PF00155 Aminotransferase class I and II C380_12750 PF03814 Potassium-transporting ATPase A subunit C380_12760 PF02669 K+-transporting ATPase, c chain C380_12765 PF13493 Domain of unknown function (DUF4118) C380_12765 PF00512 His Kinase A (phospho-acceptor) domain C380_12765 PF02702 Osmosensitive K+ channel His kinase sensor domain C380_12765 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase C380_12765 PF13492 GAF domain C380_12770 PF00486 Transcriptional regulatory protein, C terminal C380_12770 PF00072 Response regulator receiver domain C380_12780 PF02798 Glutathione S-transferase, N-terminal domain C380_12785 PF00575 S1 RNA binding domain C380_12785 PF10150 Ribonuclease E/G family C380_12790 PF02545 Maf-like protein C380_12795 PF02590 Predicted SPOUT methyltransferase C380_12805 PF01218 Coproporphyrinogen III oxidase C380_12810 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain C380_12810 PF02843 Phosphoribosylglycinamide synthetase, C domain C380_12810 PF02844 Phosphoribosylglycinamide synthetase, N domain C380_12815 PF01709 Transcriptional regulator C380_12820 PF05872 Bacterial protein of unknown function (DUF853) C380_12830 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain C380_12830 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain C380_12830 PF00378 Enoyl-CoA hydratase/isomerase C380_12835 PF01546 Peptidase family M20/M25/M40 C380_12840 PF03401 Tripartite tricarboxylate transporter family receptor C380_12845 PF03466 LysR substrate binding domain C380_12845 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family C380_12850 PF00291 Pyridoxal-phosphate dependent enzyme C380_12860 PF02608 ABC transporter substrate-binding protein PnrA-like C380_12865 PF01048 Phosphorylase superfamily C380_12880 PF02653 Branched-chain amino acid transport system / permease component C380_12895 PF07969 Amidohydrolase family C380_12910 PF00005 ABC transporter C380_12915 PF13533 Biotin-lipoyl like C380_12925 PF00990 Diguanylate cyclase, GGDEF domain C380_12945 PF01556 DnaJ C terminal domain C380_12945 PF00684 DnaJ central domain C380_12945 PF00226 DnaJ domain C380_12950 PF01709 Transcriptional regulator C380_12955 PF07670 Nucleoside recognition C380_12960 PF00069 Protein kinase domain C380_12960 PF03793 PASTA domain C380_12965 PF01053 Cys/Met metabolism PLP-dependent enzyme C380_12970 PF08411 Exonuclease C-terminal C380_12970 PF00929 Exonuclease C380_12975 PF13406 Transglycosylase SLT domain C380_12985 PF14579 Helix-hairpin-helix motif C380_12985 PF02811 PHP domain C380_12985 PF07733 Bacterial DNA polymerase III alpha NTPase domain C380_12985 PF17657 Bacterial DNA polymerase III alpha subunit finger domain C380_13010 PF01144 Coenzyme A transferase C380_13015 PF01144 Coenzyme A transferase C380_13025 PF02627 Carboxymuconolactone decarboxylase family C380_13030 PF00141 Peroxidase C380_13035 PF08450 SMP-30/Gluconolactonase/LRE-like region C380_13040 PF04909 Amidohydrolase C380_13045 PF03401 Tripartite tricarboxylate transporter family receptor C380_13050 PF03401 Tripartite tricarboxylate transporter family receptor C380_13055 PF03401 Tripartite tricarboxylate transporter family receptor C380_13060 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain C380_13060 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain C380_13065 PF03737 Aldolase/RraA C380_13070 PF03401 Tripartite tricarboxylate transporter family receptor C380_13075 PF04909 Amidohydrolase C380_13080 PF03401 Tripartite tricarboxylate transporter family receptor C380_13100 PF00990 Diguanylate cyclase, GGDEF domain C380_13100 PF03707 Bacterial signalling protein N terminal repeat C380_13100 PF00563 EAL domain C380_13135 PF05378 Hydantoinase/oxoprolinase N-terminal region C380_13135 PF01968 Hydantoinase/oxoprolinase C380_13150 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component C380_13160 PF00271 Helicase conserved C-terminal domain C380_13160 PF04408 Helicase associated domain (HA2) C380_13160 PF00270 DEAD/DEAH box helicase C380_13160 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold C380_13160 PF11898 Domain of unknown function (DUF3418) C380_13165 PF00144 Beta-lactamase C380_13165 PF11954 Domain of unknown function (DUF3471) C380_13175 PF00004 ATPase family associated with various cellular activities (AAA) C380_13175 PF17862 AAA+ lid domain C380_13175 PF06480 FtsH Extracellular C380_13175 PF01434 Peptidase family M41 C380_13180 PF00583 Acetyltransferase (GNAT) family C380_13180 PF00696 Amino acid kinase family C380_13190 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family C380_13190 PF03466 LysR substrate binding domain C380_13195 PF01966 HD domain C380_13215 PF02600 Disulfide bond formation protein DsbB C380_13220 PF12857 TOBE-like domain C380_13220 PF17850 CysA C-terminal regulatory domain C380_13220 PF00005 ABC transporter C380_13225 PF00528 Binding-protein-dependent transport system inner membrane component C380_13230 PF00528 Binding-protein-dependent transport system inner membrane component C380_13250 PF04542 Sigma-70 region 2 C380_13250 PF08281 Sigma-70, region 4 C380_13265 PF03466 LysR substrate binding domain C380_13265 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family C380_13270 PF02525 Flavodoxin-like fold C380_13275 PF00563 EAL domain C380_13275 PF03707 Bacterial signalling protein N terminal repeat C380_13275 PF00990 Diguanylate cyclase, GGDEF domain C380_13280 PF03180 NLPA lipoprotein C380_13310 PF01590 GAF domain C380_13310 PF00563 EAL domain C380_13310 PF00990 Diguanylate cyclase, GGDEF domain C380_13310 PF00360 Phytochrome region C380_13315 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain C380_13315 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain C380_13320 PF00106 short chain dehydrogenase C380_13330 PF00441 Acyl-CoA dehydrogenase, C-terminal domain C380_13330 PF02770 Acyl-CoA dehydrogenase, middle domain C380_13330 PF18158 Adaptive response protein AidB N-terminal domain C380_13335 PF13673 Acetyltransferase (GNAT) domain C380_13340 PF00107 Zinc-binding dehydrogenase C380_13340 PF16884 N-terminal domain of oxidoreductase C380_13360 PF02770 Acyl-CoA dehydrogenase, middle domain C380_13360 PF02771 Acyl-CoA dehydrogenase, N-terminal domain C380_13360 PF12806 Acetyl-CoA dehydrogenase C-terminal like C380_13360 PF00441 Acyl-CoA dehydrogenase, C-terminal domain C380_13370 PF02803 Thiolase, C-terminal domain C380_13370 PF00108 Thiolase, N-terminal domain C380_13375 PF00378 Enoyl-CoA hydratase/isomerase C380_13375 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain C380_13375 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain C380_13380 PF00005 ABC transporter C380_13385 PF00005 ABC transporter C380_13385 PF12399 Branched-chain amino acid ATP-binding cassette transporter C380_13395 PF02653 Branched-chain amino acid transport system / permease component C380_13405 PF00501 AMP-binding enzyme C380_13405 PF13193 AMP-binding enzyme C-terminal domain C380_13410 PF00027 Cyclic nucleotide-binding domain C380_13410 PF13545 Crp-like helix-turn-helix domain C380_13415 PF00135 Carboxylesterase family C380_13420 PF12833 Helix-turn-helix domain C380_13420 PF02311 AraC-like ligand binding domain C380_13425 PF02696 Uncharacterized ACR, YdiU/UPF0061 family C380_13430 PF01641 SelR domain C380_13435 PF04279 Intracellular septation protein A C380_13455 PF01176 Translation initiation factor 1A / IF-1 C380_13460 PF00571 CBS domain C380_13470 PF02653 Branched-chain amino acid transport system / permease component C380_13480 PF12399 Branched-chain amino acid ATP-binding cassette transporter C380_13480 PF00005 ABC transporter C380_13485 PF00005 ABC transporter C380_13490 PF02666 Phosphatidylserine decarboxylase C380_13510 PF01979 Amidohydrolase family C380_13515 PF05962 HutD C380_13525 PF17392 Urocanase C-terminal domain C380_13525 PF17391 Urocanase N-terminal domain C380_13525 PF01175 Urocanase Rossmann-like domain C380_13530 PF00221 Aromatic amino acid lyase C380_13535 PF00392 Bacterial regulatory proteins, gntR family C380_13535 PF07702 UTRA domain C380_13540 PF00005 ABC transporter C380_13545 PF00528 Binding-protein-dependent transport system inner membrane component C380_13550 PF16868 NMT1-like family C380_13555 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase C380_13555 PF00672 HAMP domain C380_13555 PF00512 His Kinase A (phospho-acceptor) domain C380_13560 PF00486 Transcriptional regulatory protein, C terminal C380_13560 PF00072 Response regulator receiver domain C380_13575 PF13419 Haloacid dehalogenase-like hydrolase C380_13585 PF00691 OmpA family C380_13590 PF00521 DNA gyrase/topoisomerase IV, subunit A C380_13590 PF03989 DNA gyrase C-terminal domain, beta-propeller C380_13595 PF00266 Aminotransferase class-V C380_13600 PF01842 ACT domain C380_13600 PF01817 Chorismate mutase type II C380_13600 PF00800 Prephenate dehydratase C380_13605 PF02153 Prephenate dehydrogenase C380_13610 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) C380_13615 PF00575 S1 RNA binding domain C380_13620 PF00216 Bacterial DNA-binding protein C380_13630 PF18073 Rubredoxin metal binding domain C380_13640 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus C380_13640 PF13244 Domain of unknown function (DUF4040) C380_13640 PF04039 Domain related to MnhB subunit of Na+/H+ antiporter C380_13640 PF00361 Proton-conducting membrane transporter C380_13645 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L C380_13650 PF00361 Proton-conducting membrane transporter C380_13655 PF01899 Na+/H+ ion antiporter subunit C380_13660 PF04066 Multiple resistance and pH regulation protein F (MrpF / PhaF) C380_13665 PF03334 Na+/H+ antiporter subunit C380_13670 PF05378 Hydantoinase/oxoprolinase N-terminal region C380_13670 PF01968 Hydantoinase/oxoprolinase C380_13690 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component C380_13695 PF02537 CrcB-like protein, Camphor Resistance (CrcB) C380_13710 PF02646 RmuC family C380_13715 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain C380_13715 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain C380_13725 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family C380_13725 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain C380_13735 PF00850 Histone deacetylase domain C380_13740 PF09361 Phasin protein C380_13745 PF13416 Bacterial extracellular solute-binding protein C380_13750 PF00106 short chain dehydrogenase C380_13755 PF00563 EAL domain C380_13755 PF00990 Diguanylate cyclase, GGDEF domain C380_13755 PF03707 Bacterial signalling protein N terminal repeat C380_13760 PF00749 tRNA synthetases class I (E and Q), catalytic domain C380_13765 PF00156 Phosphoribosyl transferase domain C380_13780 PF08245 Mur ligase middle domain C380_13780 PF02875 Mur ligase family, glutamate ligase domain C380_13785 PF03960 ArsC family C380_13795 PF06865 Pyrimidine/purine nucleoside phosphorylase C380_13800 PF00764 Arginosuccinate synthase C380_13805 PF01565 FAD binding domain C380_13805 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain C380_13810 PF04461 Protein of unknown function (DUF520) C380_13825 PF02660 Glycerol-3-phosphate acyltransferase C380_13830 PF04073 Aminoacyl-tRNA editing domain C380_13835 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family C380_13835 PF03466 LysR substrate binding domain C380_13840 PF03401 Tripartite tricarboxylate transporter family receptor C380_13845 PF01546 Peptidase family M20/M25/M40 C380_13845 PF07687 Peptidase dimerisation domain C380_13850 PF00248 Aldo/keto reductase family C380_13855 PF00561 alpha/beta hydrolase fold C380_13870 PF13419 Haloacid dehalogenase-like hydrolase C380_13875 PF17432 Domain of unknown function (DUF3458_C) ARM repeats C380_13875 PF11940 Domain of unknown function (DUF3458) Ig-like fold C380_13875 PF01433 Peptidase family M1 domain C380_13880 PF00316 Fructose-1-6-bisphosphatase, N-terminal domain C380_13900 PF00271 Helicase conserved C-terminal domain C380_13900 PF12419 SNF2 Helicase protein C380_13900 PF00176 SNF2 family N-terminal domain C380_13915 PF00149 Calcineurin-like phosphoesterase C380_13920 PF13361 UvrD-like helicase C-terminal domain C380_13920 PF00580 UvrD/REP helicase N-terminal domain C380_13925 PF09369 Domain of unknown function (DUF1998) C380_13925 PF00271 Helicase conserved C-terminal domain C380_13925 PF00270 DEAD/DEAH box helicase C380_13955 PF18337 RapA N-terminal Tudor like domain C380_13955 PF18339 RapA N-terminal Tudor like domain 1 C380_13955 PF00176 SNF2 family N-terminal domain C380_13955 PF12137 RNA polymerase recycling family C-terminal C380_13955 PF00271 Helicase conserved C-terminal domain C380_14005 PF00589 Phage integrase family C380_14005 PF13356 Arm DNA-binding domain C380_14010 PF00589 Phage integrase family C380_14020 PF01609 Transposase DDE domain C380_14020 PF05598 Transposase domain (DUF772) C380_14045 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) C380_14045 PF11867 Domain of unknown function (DUF3387) C380_14045 PF18766 SWI2/SNF2 ATPase C380_14065 PF02384 N-6 DNA Methylase C380_14065 PF12161 HsdM N-terminal domain C380_14160 PF00589 Phage integrase family C380_14160 PF13356 Arm DNA-binding domain C380_14180 PF13411 MerR HTH family regulatory protein C380_14185 PF00216 Bacterial DNA-binding protein C380_14190 PF01588 Putative tRNA binding domain C380_14190 PF03147 Ferredoxin-fold anticodon binding domain C380_14190 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain C380_14190 PF03484 tRNA synthetase B5 domain C380_14190 PF03483 B3/4 domain C380_14195 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain C380_14195 PF01409 tRNA synthetases class II core domain (F) C380_14200 PF00453 Ribosomal protein L20 C380_14205 PF01632 Ribosomal protein L35 C380_14210 PF05198 Translation initiation factor IF-3, N-terminal domain C380_14210 PF00707 Translation initiation factor IF-3, C-terminal domain C380_14215 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) C380_14215 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain C380_14215 PF03129 Anticodon binding domain C380_14215 PF02824 TGS domain C380_14220 PF00463 Isocitrate lyase family C380_14230 PF00892 EamA-like transporter family C380_14235 PF03737 Aldolase/RraA C380_14245 PF07715 TonB-dependent Receptor Plug Domain C380_14245 PF00593 TonB dependent receptor C380_14250 PF13640 2OG-Fe(II) oxygenase superfamily C380_14250 PF18331 PKHD-type hydroxylase C-terminal domain C380_14255 PF01070 FMN-dependent dehydrogenase C380_14270 PF01618 MotA/TolQ/ExbB proton channel family C380_14275 PF02472 Biopolymer transport protein ExbD/TolR C380_14285 PF03928 Haem-degrading C380_14290 PF01027 Inhibitor of apoptosis-promoting Bax1 C380_14300 PF05958 tRNA (Uracil-5-)-methyltransferase C380_14310 PF01037 Lrp/AsnC ligand binding domain C380_14315 PF18327 Proline utilization A proline dehydrogenase N-terminal domain C380_14315 PF01619 Proline dehydrogenase C380_14315 PF00171 Aldehyde dehydrogenase family C380_14315 PF14850 DNA-binding domain of Proline dehydrogenase C380_14365 PF03743 Bacterial conjugation TrbI-like protein C380_14370 PF03524 Conjugal transfer protein C380_14390 PF03135 CagE, TrbE, VirB family, component of type IV transporter system C380_14400 PF04956 TrbC/VIRB2 family C380_14405 PF00437 Type II/IV secretion system protein C380_14415 PF02534 Type IV secretory system Conjugative DNA transfer C380_14425 PF03466 LysR substrate binding domain C380_14425 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family C380_14430 PF00766 Electron transfer flavoprotein FAD-binding domain C380_14430 PF01012 Electron transfer flavoprotein domain C380_14435 PF01012 Electron transfer flavoprotein domain C380_14440 PF00441 Acyl-CoA dehydrogenase, C-terminal domain C380_14440 PF02770 Acyl-CoA dehydrogenase, middle domain C380_14440 PF02771 Acyl-CoA dehydrogenase, N-terminal domain C380_14440 PF12806 Acetyl-CoA dehydrogenase C-terminal like C380_14445 PF07690 Major Facilitator Superfamily C380_14465 PF00441 Acyl-CoA dehydrogenase, C-terminal domain C380_14465 PF02770 Acyl-CoA dehydrogenase, middle domain C380_14465 PF02771 Acyl-CoA dehydrogenase, N-terminal domain C380_14475 PF00501 AMP-binding enzyme C380_14475 PF13193 AMP-binding enzyme C-terminal domain C380_14480 PF02803 Thiolase, C-terminal domain C380_14480 PF00108 Thiolase, N-terminal domain C380_14485 PF00378 Enoyl-CoA hydratase/isomerase C380_14490 PF00106 short chain dehydrogenase C380_14495 PF00378 Enoyl-CoA hydratase/isomerase C380_14505 PF10502 Signal peptidase, peptidase S26 C380_14520 PF13614 AAA domain C380_14550 PF05284 Protein of unknown function (DUF736) C380_14565 PF02195 ParB-like nuclease domain C380_14570 PF06067 Domain of unknown function (DUF932) C380_14610 PF01230 HIT domain C380_14620 PF09382 RQC domain C380_14620 PF16124 RecQ zinc-binding C380_14620 PF00271 Helicase conserved C-terminal domain C380_14620 PF00570 HRDC domain C380_14620 PF00270 DEAD/DEAH box helicase C380_14645 PF00589 Phage integrase family C380_14645 PF13356 Arm DNA-binding domain C380_14650 PF00958 GMP synthase C terminal domain C380_14650 PF02540 NAD synthase C380_14650 PF00117 Glutamine amidotransferase class-I C380_14665 PF00478 IMP dehydrogenase / GMP reductase domain C380_14665 PF00571 CBS domain C380_14675 PF03658 RnfH family Ubiquitin C380_14680 PF03364 Polyketide cyclase / dehydrase and lipid transport C380_14685 PF01668 SmpB protein C380_14695 PF04542 Sigma-70 region 2 C380_14695 PF08281 Sigma-70, region 4 C380_14705 PF00378 Enoyl-CoA hydratase/isomerase C380_14720 PF01509 TruB family pseudouridylate synthase (N terminal domain) C380_14720 PF16198 tRNA pseudouridylate synthase B C-terminal domain C380_14725 PF02033 Ribosome-binding factor A C380_14730 PF04760 Translation initiation factor IF-2, N-terminal region C380_14730 PF00009 Elongation factor Tu GTP binding domain C380_14730 PF08364 Bacterial translation initiation factor IF-2 associated region C380_14730 PF11987 Translation-initiation factor 2 C380_14735 PF08529 NusA N-terminal domain C380_14735 PF13184 NusA-like KH domain C380_14735 PF00575 S1 RNA binding domain C380_14740 PF02576 RimP N-terminal domain C380_14745 PF00271 Helicase conserved C-terminal domain C380_14745 PF12419 SNF2 Helicase protein C380_14745 PF00176 SNF2 family N-terminal domain C380_14755 PF00034 Cytochrome c C380_14755 PF13442 Cytochrome C oxidase, cbb3-type, subunit III C380_14765 PF00392 Bacterial regulatory proteins, gntR family C380_14765 PF00155 Aminotransferase class I and II C380_14805 PF03466 LysR substrate binding domain C380_14805 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family C380_14810 PF03401 Tripartite tricarboxylate transporter family receptor C380_14825 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family C380_14825 PF03466 LysR substrate binding domain C380_14830 PF00694 Aconitase C-terminal domain C380_14835 PF00330 Aconitase family (aconitate hydratase) C380_14840 PF00561 alpha/beta hydrolase fold C380_14845 PF03401 Tripartite tricarboxylate transporter family receptor C380_14850 PF03466 LysR substrate binding domain C380_14850 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family C380_14860 PF08212 Lipocalin-like domain C380_14865 PF00005 ABC transporter C380_14865 PF08352 Oligopeptide/dipeptide transporter, C-terminal region C380_14870 PF00528 Binding-protein-dependent transport system inner membrane component C380_14870 PF12911 N-terminal TM domain of oligopeptide transport permease C C380_14875 PF00528 Binding-protein-dependent transport system inner membrane component C380_14880 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle C380_14890 PF01068 ATP dependent DNA ligase domain C380_14890 PF14743 DNA ligase OB-like domain C380_14895 PF02469 Fasciclin domain C380_14900 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain C380_14900 PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain C380_14900 PF01276 Orn/Lys/Arg decarboxylase, major domain C380_14910 PF01145 SPFH domain / Band 7 family C380_14920 PF02384 N-6 DNA Methylase C380_14925 PF02796 Helix-turn-helix domain of resolvase C380_14925 PF00239 Resolvase, N terminal domain C380_14975 PF00990 Diguanylate cyclase, GGDEF domain C380_14975 PF03707 Bacterial signalling protein N terminal repeat C380_14975 PF00563 EAL domain C380_14995 PF00394 Multicopper oxidase C380_14995 PF07732 Multicopper oxidase C380_14995 PF07731 Multicopper oxidase C380_15000 PF00127 Copper binding proteins, plastocyanin/azurin family C380_15015 PF03576 Peptidase family S58 C380_15050 PF00005 ABC transporter C380_15050 PF12848 ABC transporter C380_15055 PF00270 DEAD/DEAH box helicase C380_15055 PF00271 Helicase conserved C-terminal domain C380_15060 PF13460 NAD(P)H-binding C380_15075 PF02254 TrkA-N domain C380_15075 PF00999 Sodium/hydrogen exchanger family C380_15090 PF00216 Bacterial DNA-binding protein C380_15095 PF00180 Isocitrate/isopropylmalate dehydrogenase C380_15100 PF01066 CDP-alcohol phosphatidyltransferase C380_15105 PF08459 UvrC Helix-hairpin-helix N-terminal C380_15105 PF01541 GIY-YIG catalytic domain C380_15110 PF03401 Tripartite tricarboxylate transporter family receptor C380_15120 PF13340 Putative transposase of IS4/5 family (DUF4096) C380_15130 PF03401 Tripartite tricarboxylate transporter family receptor C380_15135 PF00682 HMGL-like C380_15140 PF02515 CoA-transferase family III C380_15145 PF03466 LysR substrate binding domain C380_15145 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family C380_15155 PF08207 Elongation factor P (EF-P) KOW-like domain C380_15155 PF01132 Elongation factor P (EF-P) OB domain C380_15155 PF09285 Elongation factor P, C-terminal C380_15160 PF00919 Uncharacterized protein family UPF0004 C380_15160 PF18693 TRAM domain C380_15160 PF04055 Radical SAM superfamily C380_15165 PF05233 PHB accumulation regulatory domain C380_15165 PF07879 PHB/PHA accumulation regulator DNA-binding domain C380_15170 PF04607 Region found in RelA / SpoT proteins C380_15170 PF02824 TGS domain C380_15170 PF13291 ACT domain C380_15180 PF00106 short chain dehydrogenase C380_15190 PF00486 Transcriptional regulatory protein, C terminal C380_15190 PF00072 Response regulator receiver domain C380_15195 PF00672 HAMP domain C380_15195 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase C380_15195 PF00512 His Kinase A (phospho-acceptor) domain C380_15200 PF13378 Enolase C-terminal domain-like C380_15200 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain C380_15205 PF03401 Tripartite tricarboxylate transporter family receptor C380_15210 PF00701 Dihydrodipicolinate synthetase family C380_15215 PF00356 Bacterial regulatory proteins, lacI family C380_15215 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family C380_15220 PF02542 YgbB family C380_15225 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase C380_15225 PF02542 YgbB family C380_15230 PF00270 DEAD/DEAH box helicase C380_15230 PF02559 CarD-like/TRCF domain C380_15230 PF00271 Helicase conserved C-terminal domain C380_15230 PF17757 UvrB interaction domain C380_15230 PF03461 TRCF domain C380_15245 PF00557 Metallopeptidase family M24 C380_15260 PF02082 Transcriptional regulator C380_15265 PF04405 Domain of Unknown function (DUF542) C380_15265 PF01814 Hemerythrin HHE cation binding domain C380_15285 PF01253 Translation initiation factor SUI1 C380_15295 PF00270 DEAD/DEAH box helicase C380_15295 PF00271 Helicase conserved C-terminal domain C380_15305 PF00990 Diguanylate cyclase, GGDEF domain C380_15305 PF17151 Periplasmic sensor domain C380_15315 PF00672 HAMP domain C380_15315 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain C380_15315 PF02203 Tar ligand binding domain homologue C380_15320 PF12849 PBP superfamily domain C380_15335 PF00724 NADH:flavin oxidoreductase / NADH oxidase family C380_15335 PF07992 Pyridine nucleotide-disulphide oxidoreductase C380_15345 PF04102 SlyX C380_15350 PF00155 Aminotransferase class I and II C380_15375 PF01425 Amidase C380_15380 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family C380_15380 PF03466 LysR substrate binding domain C380_15385 PF00633 Helix-hairpin-helix motif C380_15385 PF10576 Iron-sulfur binding domain of endonuclease III C380_15385 PF00730 HhH-GPD superfamily base excision DNA repair protein C380_15390 PF02661 Fic/DOC family C380_15405 PF07729 FCD domain C380_15405 PF00392 Bacterial regulatory proteins, gntR family C380_15410 PF00528 Binding-protein-dependent transport system inner membrane component C380_15415 PF00528 Binding-protein-dependent transport system inner membrane component C380_15425 PF08402 TOBE domain C380_15425 PF00005 ABC transporter C380_15430 PF00990 Diguanylate cyclase, GGDEF domain C380_15430 PF00072 Response regulator receiver domain C380_15435 PF02277 Phosphoribosyltransferase C380_15440 PF08241 Methyltransferase domain C380_15445 PF07685 CobB/CobQ-like glutamine amidotransferase domain C380_15445 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain C380_15460 PF00155 Aminotransferase class I and II C380_15465 PF03186 CobD/Cbib protein C380_15470 PF12557 Cob(I)alamin adenosyltransferase N terminal C380_15470 PF02572 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP C380_15475 PF00005 ABC transporter C380_15480 PF01032 FecCD transport family C380_15485 PF01497 Periplasmic binding protein C380_15490 PF02283 Cobinamide kinase / cobinamide phosphate guanyltransferase C380_15495 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain C380_15495 PF07685 CobB/CobQ-like glutamine amidotransferase domain C380_15500 PF00593 TonB dependent receptor C380_15500 PF07715 TonB-dependent Receptor Plug Domain C380_15515 PF01925 Sulfite exporter TauE/SafE C380_15520 PF00563 EAL domain C380_15520 PF03707 Bacterial signalling protein N terminal repeat C380_15520 PF00990 Diguanylate cyclase, GGDEF domain C380_15525 PF01966 HD domain C380_15535 PF04055 Radical SAM superfamily C380_15535 PF06969 HemN C-terminal domain C380_15540 PF13545 Crp-like helix-turn-helix domain C380_15540 PF00027 Cyclic nucleotide-binding domain C380_15555 PF13746 4Fe-4S dicluster domain C380_15555 PF12801 4Fe-4S binding domain C380_15555 PF11614 IG-like fold at C-terminal of FixG, putative oxidoreductase C380_15560 PF14715 N-terminal domain of cytochrome oxidase-cbb3, FixP C380_15560 PF13442 Cytochrome C oxidase, cbb3-type, subunit III C380_15575 PF00115 Cytochrome C and Quinol oxidase polypeptide I C380_15585 PF00403 Heavy-metal-associated domain C380_15595 PF00501 AMP-binding enzyme C380_15595 PF13193 AMP-binding enzyme C-terminal domain C380_15600 PF00378 Enoyl-CoA hydratase/isomerase C380_15605 PF03401 Tripartite tricarboxylate transporter family receptor C380_15615 PF07729 FCD domain C380_15615 PF00392 Bacterial regulatory proteins, gntR family C380_15620 PF03466 LysR substrate binding domain C380_15620 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family C380_15630 PF01790 Prolipoprotein diacylglyceryl transferase C380_15635 PF00920 Dehydratase family C380_15640 PF00920 Dehydratase family C380_15650 PF00034 Cytochrome c C380_15665 PF03350 Uncharacterized protein family, UPF0114 C380_15680 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase C380_15680 PF00512 His Kinase A (phospho-acceptor) domain C380_15680 PF00672 HAMP domain C380_15685 PF00072 Response regulator receiver domain C380_15685 PF00486 Transcriptional regulatory protein, C terminal C380_15695 PF10415 Fumarase C C-terminus C380_15695 PF00206 Lyase C380_15710 PF01177 Asp/Glu/Hydantoin racemase C380_15715 PF01863 Protein of unknown function DUF45 C380_15735 PF00145 C-5 cytosine-specific DNA methylase C380_15735 PF01381 Helix-turn-helix C380_15775 PF04002 RadC-like JAB domain C380_15790 PF06067 Domain of unknown function (DUF932) C380_15795 PF17762 HTH domain found in ParB protein C380_15795 PF02195 ParB-like nuclease domain C380_15810 PF03551 Transcriptional regulator PadR-like family C380_15815 PF03960 ArsC family C380_15820 PF01758 Sodium Bile acid symporter family C380_15835 PF01022 Bacterial regulatory protein, arsR family C380_15840 PF05284 Protein of unknown function (DUF736) C380_15870 PF13614 AAA domain C380_15885 PF10502 Signal peptidase, peptidase S26 C380_15900 PF01609 Transposase DDE domain C380_15900 PF05598 Transposase domain (DUF772) C380_15905 PF01557 Fumarylacetoacetate (FAA) hydrolase family C380_15910 PF09290 Prokaryotic acetaldehyde dehydrogenase, dimerisation C380_15910 PF01118 Semialdehyde dehydrogenase, NAD binding domain C380_15915 PF07836 DmpG-like communication domain C380_15915 PF00682 HMGL-like C380_15920 PF06139 BphX-like C380_15925 PF00848 Ring hydroxylating alpha subunit (catalytic domain) C380_15925 PF00355 Rieske [2Fe-2S] domain C380_15930 PF00866 Ring hydroxylating beta subunit C380_15935 PF00355 Rieske [2Fe-2S] domain C380_15940 PF00106 short chain dehydrogenase C380_15945 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily C380_15950 PF00561 alpha/beta hydrolase fold C380_15955 PF03922 OmpW family C380_15960 PF07992 Pyridine nucleotide-disulphide oxidoreductase C380_15960 PF14759 Reductase C-terminal C380_15965 PF03466 LysR substrate binding domain C380_15965 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family C380_15975 PF02534 Type IV secretory system Conjugative DNA transfer C380_15985 PF00437 Type II/IV secretion system protein C380_15990 PF04956 TrbC/VIRB2 family C380_16000 PF03135 CagE, TrbE, VirB family, component of type IV transporter system C380_16025 PF03524 Conjugal transfer protein C380_16030 PF03743 Bacterial conjugation TrbI-like protein C380_16060 PF05362 Lon protease (S16) C-terminal proteolytic domain C380_16060 PF00004 ATPase family associated with various cellular activities (AAA) C380_16060 PF02190 ATP-dependent protease La (LON) substrate-binding domain C380_16065 PF06689 ClpX C4-type zinc finger C380_16065 PF10431 C-terminal, D2-small domain, of ClpB protein C380_16065 PF07724 AAA domain (Cdc48 subfamily) C380_16070 PF00574 Clp protease C380_16075 PF05697 Bacterial trigger factor protein (TF) C380_16075 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase C380_16075 PF05698 Bacterial trigger factor protein (TF) C-terminus C380_16080 PF00873 AcrB/AcrD/AcrF family C380_16085 PF13533 Biotin-lipoyl like C380_16095 PF03315 Serine dehydratase beta chain C380_16095 PF03313 Serine dehydratase alpha chain C380_16105 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component C380_16115 PF01593 Flavin containing amine oxidoreductase C380_16120 PF03401 Tripartite tricarboxylate transporter family receptor C380_16125 PF00072 Response regulator receiver domain C380_16125 PF00486 Transcriptional regulatory protein, C terminal C380_16130 PF00512 His Kinase A (phospho-acceptor) domain C380_16130 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase C380_16155 PF13419 Haloacid dehalogenase-like hydrolase C380_16160 PF00356 Bacterial regulatory proteins, lacI family C380_16165 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain C380_16165 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain C380_16170 PF00294 pfkB family carbohydrate kinase C380_16180 PF00005 ABC transporter C380_16190 PF00528 Binding-protein-dependent transport system inner membrane component C380_16195 PF00528 Binding-protein-dependent transport system inner membrane component C380_16200 PF00762 Ferrochelatase C380_16205 PF05362 Lon protease (S16) C-terminal proteolytic domain C380_16205 PF13654 AAA domain C380_16210 PF00005 ABC transporter C380_16215 PF12399 Branched-chain amino acid ATP-binding cassette transporter C380_16215 PF00005 ABC transporter C380_16225 PF02653 Branched-chain amino acid transport system / permease component C380_16235 PF00378 Enoyl-CoA hydratase/isomerase C380_16240 PF00501 AMP-binding enzyme C380_16240 PF13193 AMP-binding enzyme C-terminal domain C380_16245 PF00111 2Fe-2S iron-sulfur cluster binding domain C380_16245 PF01799 [2Fe-2S] binding domain C380_16250 PF03450 CO dehydrogenase flavoprotein C-terminal domain C380_16250 PF00941 FAD binding domain in molybdopterin dehydrogenase C380_16255 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase C380_16255 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain C380_16265 PF13340 Putative transposase of IS4/5 family (DUF4096) C380_16280 PF00724 NADH:flavin oxidoreductase / NADH oxidase family C380_16285 PF12146 Serine aminopeptidase, S33 C380_16305 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family C380_16305 PF03466 LysR substrate binding domain C380_16315 PF01636 Phosphotransferase enzyme family C380_16325 PF04244 Deoxyribodipyrimidine photo-lyase-related protein C380_16330 PF00875 DNA photolyase C380_16330 PF03441 FAD binding domain of DNA photolyase C380_16340 PF03441 FAD binding domain of DNA photolyase C380_16340 PF00875 DNA photolyase C380_16345 PF01593 Flavin containing amine oxidoreductase C380_16350 PF08212 Lipocalin-like domain C380_16355 PF00462 Glutaredoxin C380_16365 PF00561 alpha/beta hydrolase fold C380_16375 PF10605 3HB-oligomer hydrolase (3HBOH) C380_16380 PF02653 Branched-chain amino acid transport system / permease component C380_16380 PF11862 Domain of unknown function (DUF3382) C380_16390 PF00005 ABC transporter C380_16395 PF12399 Branched-chain amino acid ATP-binding cassette transporter C380_16395 PF00005 ABC transporter C380_16400 PF10503 Esterase PHB depolymerase C380_16410 PF00072 Response regulator receiver domain C380_16410 PF00158 Sigma-54 interaction domain C380_16410 PF02954 Bacterial regulatory protein, Fis family C380_16420 PF01970 Tripartite tricarboxylate transporter TctA family C380_16435 PF00486 Transcriptional regulatory protein, C terminal C380_16435 PF00072 Response regulator receiver domain C380_16440 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase C380_16440 PF00512 His Kinase A (phospho-acceptor) domain C380_16440 PF08521 Two-component sensor kinase N-terminal C380_16445 PF01479 S4 domain C380_16450 PF01171 PP-loop family C380_16450 PF09179 TilS substrate binding domain C380_16455 PF02203 Tar ligand binding domain homologue C380_16455 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain C380_16455 PF00672 HAMP domain C380_16460 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit C380_16465 PF12833 Helix-turn-helix domain C380_16465 PF00730 HhH-GPD superfamily base excision DNA repair protein C380_16465 PF06029 AlkA N-terminal domain C380_16465 PF02805 Metal binding domain of Ada C380_16470 PF01406 tRNA synthetases class I (C) catalytic domain C380_16470 PF09190 DALR domain C380_16485 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD C380_16490 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD C380_16495 PF00149 Calcineurin-like phosphoesterase C380_16500 PF06167 Glucose-regulated metallo-peptidase M90 C380_16510 PF17831 Pyruvate dehydrogenase E1 component middle domain C380_16510 PF00456 Transketolase, thiamine diphosphate binding domain C380_16515 PF01037 Lrp/AsnC ligand binding domain C380_16520 PF01053 Cys/Met metabolism PLP-dependent enzyme C380_16525 PF13404 AsnC-type helix-turn-helix domain C380_16525 PF01037 Lrp/AsnC ligand binding domain C380_16535 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase C380_16540 PF00472 RF-1 domain C380_16545 PF01220 Dehydroquinase class II C380_16555 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain C380_16555 PF00749 tRNA synthetases class I (E and Q), catalytic domain C380_16615 PF00497 Bacterial extracellular solute-binding proteins, family 3 C380_16625 PF13396 Phospholipase_D-nuclease N-terminal C380_16625 PF13091 PLD-like domain C380_16635 PF00849 RNA pseudouridylate synthase C380_16645 PF00043 Glutathione S-transferase, C-terminal domain C380_16645 PF02798 Glutathione S-transferase, N-terminal domain C380_16665 PF00565 Staphylococcal nuclease homologue C380_16700 PF00849 RNA pseudouridylate synthase C380_16705 PF03060 Nitronate monooxygenase C380_16710 PF00072 Response regulator receiver domain C380_16720 PF00512 His Kinase A (phospho-acceptor) domain C380_16720 PF01627 Hpt domain C380_16720 PF00072 Response regulator receiver domain C380_16720 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) C380_16720 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase C380_16720 PF00672 HAMP domain C380_16745 PF07690 Major Facilitator Superfamily C380_16755 PF03707 Bacterial signalling protein N terminal repeat C380_16755 PF00990 Diguanylate cyclase, GGDEF domain C380_16755 PF00563 EAL domain C380_16760 PF01926 50S ribosome-binding GTPase C380_16775 PF04262 Glutamate-cysteine ligase C380_16780 PF00106 short chain dehydrogenase C380_16800 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase C380_16800 PF00925 GTP cyclohydrolase II C380_16805 PF00885 6,7-dimethyl-8-ribityllumazine synthase C380_16810 PF01029 NusB family C380_16820 PF03061 Thioesterase superfamily C380_16825 PF01618 MotA/TolQ/ExbB proton channel family C380_16830 PF02472 Biopolymer transport protein ExbD/TolR C380_16840 PF00083 Sugar (and other) transporter C380_16840 PF07690 Major Facilitator Superfamily C380_16845 PF06481 COX Aromatic Rich Motif C380_16845 PF00116 Cytochrome C oxidase subunit II, periplasmic domain C380_16850 PF00115 Cytochrome C and Quinol oxidase polypeptide I C380_16855 PF00510 Cytochrome c oxidase subunit III C380_16860 PF03626 Prokaryotic Cytochrome C oxidase subunit IV C380_16865 PF02104 SURF1 family C380_16870 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase C380_16870 PF00512 His Kinase A (phospho-acceptor) domain C380_16870 PF07689 KaiB domain C380_16875 PF00072 Response regulator receiver domain C380_16880 PF05992 SbmA/BacA-like family C380_16895 PF00330 Aconitase family (aconitate hydratase) C380_16895 PF06434 Aconitate hydratase 2 N-terminus C380_16895 PF11791 Aconitate B N-terminal domain C380_16910 PF00056 lactate/malate dehydrogenase, NAD binding domain C380_16910 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain C380_16915 PF07702 UTRA domain C380_16915 PF00392 Bacterial regulatory proteins, gntR family C380_16925 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit C380_16930 PF02910 Fumarate reductase flavoprotein C-term C380_16930 PF00890 FAD binding domain C380_16935 PF13085 2Fe-2S iron-sulfur cluster binding domain C380_16940 PF03937 Flavinator of succinate dehydrogenase C380_16945 PF00285 Citrate synthase, C-terminal domain C380_16955 PF00665 Integrase core domain C380_16955 PF13333 Integrase core domain C380_16955 PF13276 HTH-like domain C380_16965 PF00106 short chain dehydrogenase C380_16970 PF02583 Metal-sensitive transcriptional repressor C380_16975 PF00107 Zinc-binding dehydrogenase C380_16975 PF08240 Alcohol dehydrogenase GroES-like domain C380_16980 PF00756 Putative esterase C380_16985 PF00884 Sulfatase C380_16985 PF08019 Phosphoethanolamine transferase EptA/EptB C380_16990 PF08990 Erythronolide synthase docking C380_16990 PF09277 Erythronolide synthase, docking C380_16990 PF02801 Beta-ketoacyl synthase, C-terminal domain C380_16990 PF08240 Alcohol dehydrogenase GroES-like domain C380_16990 PF08659 KR domain C380_16990 PF16197 Ketoacyl-synthetase C-terminal extension C380_16990 PF00550 Phosphopantetheine attachment site C380_16990 PF00698 Acyl transferase domain C380_16990 PF14765 Polyketide synthase dehydratase C380_16990 PF00109 Beta-ketoacyl synthase, N-terminal domain C380_17000 PF14542 GCN5-related N-acetyl-transferase C380_17005 PF04055 Radical SAM superfamily C380_17020 PF01381 Helix-turn-helix C380_17025 PF01381 Helix-turn-helix C380_17030 PF07729 FCD domain C380_17030 PF00392 Bacterial regulatory proteins, gntR family C380_17040 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain C380_17040 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase C380_17045 PF01799 [2Fe-2S] binding domain C380_17045 PF00111 2Fe-2S iron-sulfur cluster binding domain C380_17055 PF00941 FAD binding domain in molybdopterin dehydrogenase C380_17055 PF03450 CO dehydrogenase flavoprotein C-terminal domain C380_17060 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain C380_17060 PF00391 PEP-utilising enzyme, mobile domain C380_17065 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain C380_17065 PF00391 PEP-utilising enzyme, mobile domain C380_17075 PF02653 Branched-chain amino acid transport system / permease component C380_17085 PF00005 ABC transporter C380_17085 PF12399 Branched-chain amino acid ATP-binding cassette transporter C380_17090 PF00005 ABC transporter C380_17095 PF17645 Arylmalonate decarboxylase C380_17100 PF00561 alpha/beta hydrolase fold C380_17110 PF00857 Isochorismatase family C380_17120 PF03401 Tripartite tricarboxylate transporter family receptor C380_17125 PF14698 Argininosuccinate lyase C-terminal C380_17125 PF00206 Lyase C380_17130 PF03466 LysR substrate binding domain C380_17130 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family C380_17135 PF01609 Transposase DDE domain C380_17135 PF05598 Transposase domain (DUF772) C380_17150 PF00909 Ammonium Transporter Family C380_17155 PF13091 PLD-like domain C380_17160 PF01207 Dihydrouridine synthase (Dus) C380_17170 PF08468 Methyltransferase small domain N-terminal C380_17170 PF05175 Methyltransferase small domain C380_17185 PF00072 Response regulator receiver domain C380_17185 PF00196 Bacterial regulatory proteins, luxR family C380_17190 PF00072 Response regulator receiver domain C380_17190 PF00672 HAMP domain C380_17190 PF00512 His Kinase A (phospho-acceptor) domain C380_17190 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase C380_17190 PF01627 Hpt domain C380_17195 PF00171 Aldehyde dehydrogenase family C380_17205 PF10431 C-terminal, D2-small domain, of ClpB protein C380_17205 PF17871 AAA lid domain C380_17205 PF02861 Clp amino terminal domain, pathogenicity island component C380_17205 PF07724 AAA domain (Cdc48 subfamily) C380_17205 PF00004 ATPase family associated with various cellular activities (AAA) C380_17210 PF00665 Integrase core domain C380_17215 PF01695 IstB-like ATP binding protein C380_17220 PF00114 Pilin (bacterial filament) C380_17220 PF07963 Prokaryotic N-terminal methylation motif C380_17225 PF14245 Type IV pilin PilA C380_17225 PF07963 Prokaryotic N-terminal methylation motif C380_17230 PF05567 Neisseria PilC beta-propeller domain C380_17275 PF00441 Acyl-CoA dehydrogenase, C-terminal domain C380_17275 PF02771 Acyl-CoA dehydrogenase, N-terminal domain C380_17275 PF02770 Acyl-CoA dehydrogenase, middle domain C380_17275 PF12806 Acetyl-CoA dehydrogenase C-terminal like C380_17280 PF00766 Electron transfer flavoprotein FAD-binding domain C380_17280 PF01012 Electron transfer flavoprotein domain C380_17285 PF01012 Electron transfer flavoprotein domain C380_17290 PF12795 Mechanosensitive ion channel porin domain C380_17290 PF12794 Mechanosensitive ion channel inner membrane domain 1 C380_17290 PF00924 Mechanosensitive ion channel C380_17295 PF00378 Enoyl-CoA hydratase/isomerase C380_17300 PF00850 Histone deacetylase domain C380_17305 PF07726 ATPase family associated with various cellular activities (AAA) C380_17305 PF17863 AAA lid domain C380_17315 PF13559 Domain of unknown function (DUF4129) C380_17315 PF01841 Transglutaminase-like superfamily C380_17315 PF11992 Domain of unknown function (DUF3488) C380_17320 PF13406 Transglycosylase SLT domain C380_17325 PF00005 ABC transporter C380_17330 PF01061 ABC-2 type transporter C380_17335 PF13458 Periplasmic binding protein C380_17345 PF02687 FtsX-like permease family C380_17345 PF00005 ABC transporter C380_17345 PF12704 MacB-like periplasmic core domain C380_17350 PF12704 MacB-like periplasmic core domain C380_17350 PF02687 FtsX-like permease family C380_17350 PF00005 ABC transporter C380_17355 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion C380_17360 PF02321 Outer membrane efflux protein C380_17365 PF12833 Helix-turn-helix domain C380_17365 PF14525 AraC-binding-like domain C380_17385 PF12399 Branched-chain amino acid ATP-binding cassette transporter C380_17385 PF00005 ABC transporter C380_17390 PF00005 ABC transporter C380_17395 PF00171 Aldehyde dehydrogenase family C380_17400 PF00814 Glycoprotease family C380_17410 PF03861 ANTAR domain C380_17410 PF00072 Response regulator receiver domain C380_17420 PF00528 Binding-protein-dependent transport system inner membrane component C380_17425 PF00005 ABC transporter C380_17430 PF00571 CBS domain C380_17445 PF03480 Bacterial extracellular solute-binding protein, family 7 C380_17450 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component C380_17455 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component C380_17465 PF00356 Bacterial regulatory proteins, lacI family C380_17470 PF08447 PAS fold C380_17470 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain C380_17475 PF07690 Major Facilitator Superfamily C380_17480 PF03793 PASTA domain C380_17480 PF00069 Protein kinase domain C380_17485 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain C380_17485 PF18267 Rubredoxin NAD+ reductase C-terminal domain C380_17485 PF04324 BFD-like [2Fe-2S] binding domain C380_17485 PF01077 Nitrite and sulphite reductase 4Fe-4S domain C380_17485 PF07992 Pyridine nucleotide-disulphide oxidoreductase C380_17495 PF00355 Rieske [2Fe-2S] domain C380_17500 PF04879 Molybdopterin oxidoreductase Fe4S4 domain C380_17500 PF00384 Molybdopterin oxidoreductase C380_17500 PF01568 Molydopterin dinucleotide binding domain C380_17505 PF00591 Glycosyl transferase family, a/b domain C380_17505 PF02885 Glycosyl transferase family, helical bundle domain C380_17510 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases C380_17520 PF03061 Thioesterase superfamily C380_17535 PF13458 Periplasmic binding protein C380_17540 PF07715 TonB-dependent Receptor Plug Domain C380_17540 PF07660 Secretin and TonB N terminus short domain C380_17540 PF00593 TonB dependent receptor C380_17550 PF00990 Diguanylate cyclase, GGDEF domain C380_17550 PF00563 EAL domain C380_17550 PF03707 Bacterial signalling protein N terminal repeat C380_17555 PF01165 Ribosomal protein S21 C380_17565 PF03466 LysR substrate binding domain C380_17565 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family C380_17570 PF00180 Isocitrate/isopropylmalate dehydrogenase C380_17580 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family C380_17580 PF03466 LysR substrate binding domain C380_17595 PF13460 NAD(P)H-binding C380_17595 PF11066 Protein of unknown function (DUF2867) C380_17600 PF01523 Putative modulator of DNA gyrase C380_17605 PF04751 Protein of unknown function (DUF615) C380_17610 PF00994 Probable molybdopterin binding domain C380_17620 PF00132 Bacterial transferase hexapeptide (six repeats) C380_17625 PF00588 SpoU rRNA Methylase family C380_17630 PF00459 Inositol monophosphatase family C380_17635 PF00072 Response regulator receiver domain C380_17640 PF00672 HAMP domain C380_17640 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase C380_17640 PF00512 His Kinase A (phospho-acceptor) domain C380_17640 PF01627 Hpt domain C380_17640 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) C380_17640 PF00072 Response regulator receiver domain C380_17645 PF03707 Bacterial signalling protein N terminal repeat C380_17645 PF00990 Diguanylate cyclase, GGDEF domain C380_17645 PF00563 EAL domain C380_17650 PF01624 MutS domain I C380_17650 PF05190 MutS family domain IV C380_17650 PF05188 MutS domain II C380_17650 PF05192 MutS domain III C380_17650 PF00488 MutS domain V C380_17675 PF00563 EAL domain C380_17675 PF00990 Diguanylate cyclase, GGDEF domain C380_17675 PF03707 Bacterial signalling protein N terminal repeat C380_17680 PF03707 Bacterial signalling protein N terminal repeat C380_17680 PF00990 Diguanylate cyclase, GGDEF domain C380_17680 PF00563 EAL domain C380_17685 PF00563 EAL domain C380_17685 PF00990 Diguanylate cyclase, GGDEF domain C380_17685 PF03707 Bacterial signalling protein N terminal repeat C380_17695 PF03707 Bacterial signalling protein N terminal repeat C380_17695 PF00990 Diguanylate cyclase, GGDEF domain C380_17695 PF00563 EAL domain C380_17705 PF02673 Bacitracin resistance protein BacA C380_17735 PF07694 5TMR of 5TMR-LYT C380_17735 PF06580 Histidine kinase C380_17740 PF00072 Response regulator receiver domain C380_17740 PF04397 LytTr DNA-binding domain C380_17745 PF02321 Outer membrane efflux protein C380_17750 PF00873 AcrB/AcrD/AcrF family C380_17755 PF00873 AcrB/AcrD/AcrF family C380_17760 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion C380_17765 PF01810 LysE type translocator C380_17770 PF00005 ABC transporter C380_17775 PF00892 EamA-like transporter family C380_17780 PF01073 3-beta hydroxysteroid dehydrogenase/isomerase family C380_17785 PF01758 Sodium Bile acid symporter family C380_17795 PF00106 short chain dehydrogenase C380_17800 PF01614 Bacterial transcriptional regulator C380_17800 PF09339 IclR helix-turn-helix domain C380_17810 PF00753 Metallo-beta-lactamase superfamily C380_17825 PF00072 Response regulator receiver domain C380_17825 PF00989 PAS fold C380_17825 PF01627 Hpt domain C380_17825 PF00512 His Kinase A (phospho-acceptor) domain C380_17825 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase C380_17825 PF00497 Bacterial extracellular solute-binding proteins, family 3 C380_17835 PF00072 Response regulator receiver domain C380_17840 PF00486 Transcriptional regulatory protein, C terminal C380_17840 PF00072 Response regulator receiver domain C380_17845 PF00072 Response regulator receiver domain C380_17845 PF00486 Transcriptional regulatory protein, C terminal C380_17850 PF02954 Bacterial regulatory protein, Fis family C380_17850 PF00072 Response regulator receiver domain C380_17850 PF00158 Sigma-54 interaction domain C380_17855 PF03707 Bacterial signalling protein N terminal repeat C380_17855 PF00563 EAL domain C380_17855 PF00990 Diguanylate cyclase, GGDEF domain C380_17865 PF01451 Low molecular weight phosphotyrosine protein phosphatase C380_17870 PF02625 XdhC and CoxI family C380_17870 PF13478 XdhC Rossmann domain C380_17890 PF00941 FAD binding domain in molybdopterin dehydrogenase C380_17890 PF03450 CO dehydrogenase flavoprotein C-terminal domain C380_17895 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain C380_17895 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase C380_17900 PF00111 2Fe-2S iron-sulfur cluster binding domain C380_17900 PF01799 [2Fe-2S] binding domain C380_17910 PF00376 MerR family regulatory protein C380_17910 PF09278 MerR, DNA binding C380_17920 PF03358 NADPH-dependent FMN reductase C380_17930 PF01758 Sodium Bile acid symporter family C380_17945 PF01022 Bacterial regulatory protein, arsR family C380_17950 PF13426 PAS domain C380_17950 PF00990 Diguanylate cyclase, GGDEF domain C380_17950 PF00563 EAL domain C380_17975 PF03109 ABC1 family C380_17985 PF12849 PBP superfamily domain C380_17990 PF00005 ABC transporter C380_17995 PF00528 Binding-protein-dependent transport system inner membrane component C380_18010 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component C380_18015 PF03480 Bacterial extracellular solute-binding protein, family 7 C380_18020 PF02779 Transketolase, pyrimidine binding domain C380_18020 PF13292 1-deoxy-D-xylulose-5-phosphate synthase C380_18020 PF02780 Transketolase, C-terminal domain C380_18025 PF00348 Polyprenyl synthetase C380_18030 PF02609 Exonuclease VII small subunit C380_18035 PF00848 Ring hydroxylating alpha subunit (catalytic domain) C380_18035 PF00355 Rieske [2Fe-2S] domain C380_18045 PF00581 Rhodanese-like domain C380_18050 PF05247 Flagellar transcriptional activator (FlhD) C380_18055 PF05280 Flagellar transcriptional activator (FlhC) C380_18080 PF04233 Phage Mu protein F like protein C380_18085 PF06074 Protein of unknown function (DUF935) C380_18090 PF03237 Terminase-like family C380_18120 PF00959 Phage lysozyme C380_18135 PF01741 Large-conductance mechanosensitive channel, MscL C380_18145 PF01381 Helix-turn-helix C380_18180 PF01471 Putative peptidoglycan binding domain C380_18180 PF13401 AAA domain C380_18220 PF04381 Putative exonuclease, RdgC C380_18245 PF10123 Mu-like prophage I protein C380_18255 PF10124 Mu-like prophage major head subunit gpT C380_18325 PF01594 AI-2E family transporter C380_18335 PF00311 Phosphoenolpyruvate carboxylase C380_18340 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain C380_18340 PF03900 Porphobilinogen deaminase, C-terminal domain C380_18360 PF01292 Prokaryotic cytochrome b561 C380_18365 PF04264 YceI-like domain C380_18380 PF01435 Peptidase family M48 C380_18390 PF00483 Nucleotidyl transferase C380_18395 PF01206 Sulfurtransferase TusA C380_18400 PF09297 NADH pyrophosphatase zinc ribbon domain C380_18400 PF00293 NUDIX domain C380_18400 PF09296 NADH pyrophosphatase-like rudimentary NUDIX domain C380_18405 PF00291 Pyridoxal-phosphate dependent enzyme C380_18420 PF03466 LysR substrate binding domain C380_18420 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family C380_18425 PF00441 Acyl-CoA dehydrogenase, C-terminal domain C380_18425 PF02770 Acyl-CoA dehydrogenase, middle domain C380_18425 PF02771 Acyl-CoA dehydrogenase, N-terminal domain C380_18430 PF02515 CoA-transferase family III C380_18435 PF02203 Tar ligand binding domain homologue C380_18435 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain C380_18435 PF00672 HAMP domain C380_18440 PF00885 6,7-dimethyl-8-ribityllumazine synthase C380_18450 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family C380_18450 PF03466 LysR substrate binding domain C380_18455 PF03480 Bacterial extracellular solute-binding protein, family 7 C380_18460 PF00920 Dehydratase family C380_18470 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component C380_18475 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component C380_18480 PF13460 NAD(P)H-binding C380_18485 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family C380_18485 PF03466 LysR substrate binding domain C380_18495 PF00072 Response regulator receiver domain C380_18495 PF01584 CheW-like domain C380_18515 PF00970 Oxidoreductase FAD-binding domain C380_18515 PF00111 2Fe-2S iron-sulfur cluster binding domain C380_18515 PF00175 Oxidoreductase NAD-binding domain C380_18520 PF00512 His Kinase A (phospho-acceptor) domain C380_18520 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase C380_18520 PF00989 PAS fold C380_18525 PF00072 Response regulator receiver domain C380_18525 PF00196 Bacterial regulatory proteins, luxR family C380_18530 PF03401 Tripartite tricarboxylate transporter family receptor C380_18535 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) C380_18540 PF01743 Poly A polymerase head domain C380_18540 PF12627 Probable RNA and SrmB- binding site of polymerase A C380_18540 PF12626 Polymerase A arginine-rich C-terminus C380_18550 PF00308 Bacterial dnaA protein C380_18560 PF00586 AIR synthase related protein, N-terminal domain C380_18560 PF02769 AIR synthase related protein, C-terminal domain C380_18580 PF01965 DJ-1/PfpI family C380_18585 PF12833 Helix-turn-helix domain C380_18585 PF02311 AraC-like ligand binding domain C380_18600 PF03976 Polyphosphate kinase 2 (PPK2) C380_18615 PF13369 Transglutaminase-like superfamily C380_18620 PF03023 Lipid II flippase MurJ C380_18625 PF01649 Ribosomal protein S20 C380_18640 PF00202 Aminotransferase class-III C380_18645 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain C380_18645 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain C380_18655 PF07664 Ferrous iron transport protein B C terminus C380_18655 PF02421 Ferrous iron transport protein B C380_18655 PF07670 Nucleoside recognition C380_18670 PF00326 Prolyl oligopeptidase family C380_18675 PF00665 Integrase core domain C380_18675 PF13276 HTH-like domain C380_18675 PF13333 Integrase core domain C380_18695 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase C380_18695 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase C380_18700 PF00072 Response regulator receiver domain C380_18700 PF00486 Transcriptional regulatory protein, C terminal C380_18705 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase C380_18705 PF00512 His Kinase A (phospho-acceptor) domain C380_18710 PF03692 Putative zinc- or iron-chelating domain C380_18715 PF04199 Putative cyclase C380_18720 PF00266 Aminotransferase class-V C380_18725 PF03301 Tryptophan 2,3-dioxygenase C380_18750 PF04293 SpoVR like protein C380_18755 PF04285 Protein of unknown function (DUF444) C380_18760 PF06798 PrkA serine protein kinase C-terminal domain C380_18760 PF08298 PrkA AAA domain C380_18765 PF01494 FAD binding domain C380_18770 PF03707 Bacterial signalling protein N terminal repeat C380_18770 PF00990 Diguanylate cyclase, GGDEF domain C380_18770 PF00563 EAL domain C380_18775 PF00990 Diguanylate cyclase, GGDEF domain C380_18775 PF03707 Bacterial signalling protein N terminal repeat C380_18775 PF00563 EAL domain C380_18780 PF00330 Aconitase family (aconitate hydratase) C380_18780 PF00694 Aconitase C-terminal domain C380_18795 PF00816 H-NS histone family C380_18800 PF00149 Calcineurin-like phosphoesterase C380_18805 PF00270 DEAD/DEAH box helicase C380_18805 PF00271 Helicase conserved C-terminal domain C380_18825 PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) C380_18830 PF02634 FdhD/NarQ family C380_18850 PF13247 4Fe-4S dicluster domain C380_18855 PF00384 Molybdopterin oxidoreductase C380_18855 PF01568 Molydopterin dinucleotide binding domain C380_18855 PF04879 Molybdopterin oxidoreductase Fe4S4 domain C380_18885 PF01568 Molydopterin dinucleotide binding domain C380_18885 PF00384 Molybdopterin oxidoreductase C380_18885 PF04879 Molybdopterin oxidoreductase Fe4S4 domain C380_18890 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit C380_18890 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region C380_18890 PF10531 SLBB domain C380_18895 PF03466 LysR substrate binding domain C380_18895 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family C380_18900 PF10609 NUBPL iron-transfer P-loop NTPase C380_18915 PF08450 SMP-30/Gluconolactonase/LRE-like region C380_18920 PF08264 Anticodon-binding domain of tRNA C380_18920 PF09334 tRNA synthetases class I (M) C380_18920 PF01588 Putative tRNA binding domain C380_18945 PF02616 Segregation and condensation protein ScpA C380_18950 PF00890 FAD binding domain C380_18950 PF02910 Fumarate reductase flavoprotein C-term C380_18960 PF01242 6-pyruvoyl tetrahydropterin synthase C380_18965 PF02261 Aspartate decarboxylase C380_18970 PF00202 Aminotransferase class-III C380_18980 PF00155 Aminotransferase class I and II C380_19005 PF04715 Anthranilate synthase component I, N terminal region C380_19005 PF00425 chorismate binding enzyme C380_19010 PF02445 Quinolinate synthetase A protein C380_19015 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain C380_19015 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain C380_19020 PF02548 Ketopantoate hydroxymethyltransferase C380_19025 PF02569 Pantoate-beta-alanine ligase C380_19040 PF04168 A predicted alpha-helical domain with a conserved ER motif. C380_19040 PF14403 Circularly permuted ATP-grasp type 2 C380_19045 PF01841 Transglutaminase-like superfamily C380_19045 PF08379 Bacterial transglutaminase-like N-terminal region C380_19065 PF14403 Circularly permuted ATP-grasp type 2 C380_19070 PF15887 Putative zinc-binding metallo-peptidase C380_19070 PF10005 zinc-ribbon domain C380_19085 PF07043 Protein of unknown function (DUF1328) C380_19090 PF07730 Histidine kinase C380_19090 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase C380_19090 PF05384 Sensor protein DegS C380_19095 PF00196 Bacterial regulatory proteins, luxR family C380_19095 PF00072 Response regulator receiver domain C380_19105 PF00899 ThiF family C380_19110 PF13180 PDZ domain C380_19110 PF03572 Peptidase family S41 C380_19115 PF00300 Histidine phosphatase superfamily (branch 1) C380_19120 PF00581 Rhodanese-like domain C380_19125 PF00462 Glutaredoxin C380_19130 PF02556 Preprotein translocase subunit SecB C380_19135 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus C380_19135 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus C380_19140 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain C380_19140 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain C380_19145 PF03466 LysR substrate binding domain C380_19145 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family C380_19150 PF01467 Cytidylyltransferase-like C380_19160 PF05193 Peptidase M16 inactive domain C380_19160 PF00675 Insulinase (Peptidase family M16) C380_19165 PF00675 Insulinase (Peptidase family M16) C380_19165 PF05193 Peptidase M16 inactive domain C380_19170 PF00448 SRP54-type protein, GTPase domain C380_19170 PF02881 SRP54-type protein, helical bundle domain C380_19175 PF00990 Diguanylate cyclase, GGDEF domain C380_19175 PF03707 Bacterial signalling protein N terminal repeat C380_19175 PF00563 EAL domain C380_19180 PF06594 Haemolysin-type calcium binding protein related domain C380_19180 PF00353 RTX calcium-binding nonapeptide repeat (4 copies) C380_19185 PF00140 Sigma-70 factor, region 1.2 C380_19185 PF04542 Sigma-70 region 2 C380_19185 PF04545 Sigma-70, region 4 C380_19190 PF03401 Tripartite tricarboxylate transporter family receptor C380_19195 PF02630 SCO1/SenC C380_19200 PF01040 UbiA prenyltransferase family C380_19225 PF00510 Cytochrome c oxidase subunit III C380_19235 PF04442 Cytochrome c oxidase assembly protein CtaG/Cox11 C380_19245 PF00115 Cytochrome C and Quinol oxidase polypeptide I C380_19250 PF00116 Cytochrome C oxidase subunit II, periplasmic domain C380_19250 PF02790 Cytochrome C oxidase subunit II, transmembrane domain C380_19260 PF08241 Methyltransferase domain C380_19270 PF00588 SpoU rRNA Methylase family C380_19275 PF03466 LysR substrate binding domain C380_19275 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family C380_19290 PF01810 LysE type translocator C380_19295 PF00999 Sodium/hydrogen exchanger family C380_19295 PF02254 TrkA-N domain C380_19300 PF03458 UPF0126 domain C380_19315 PF03466 LysR substrate binding domain C380_19315 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family C380_19325 PF03401 Tripartite tricarboxylate transporter family receptor C380_19335 PF00108 Thiolase, N-terminal domain C380_19335 PF02803 Thiolase, C-terminal domain C380_19340 PF01144 Coenzyme A transferase C380_19345 PF01144 Coenzyme A transferase C380_19350 PF01614 Bacterial transcriptional regulator C380_19350 PF09339 IclR helix-turn-helix domain C380_19375 PF00005 ABC transporter C380_19380 PF12399 Branched-chain amino acid ATP-binding cassette transporter C380_19380 PF00005 ABC transporter C380_19390 PF02653 Branched-chain amino acid transport system / permease component C380_19395 PF00694 Aconitase C-terminal domain C380_19400 PF00330 Aconitase family (aconitate hydratase) C380_19420 PF00034 Cytochrome c C380_19450 PF04357 TamB, inner membrane protein subunit of TAM complex C380_19460 PF00892 EamA-like transporter family C380_19465 PF01037 Lrp/AsnC ligand binding domain C380_19470 PF08546 Ketopantoate reductase PanE/ApbA C terminal C380_19470 PF02558 Ketopantoate reductase PanE/ApbA C380_19475 PF00512 His Kinase A (phospho-acceptor) domain C380_19475 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase C380_19475 PF08521 Two-component sensor kinase N-terminal C380_19480 PF00486 Transcriptional regulatory protein, C terminal C380_19480 PF00072 Response regulator receiver domain C380_19490 PF13180 PDZ domain C380_19510 PF04295 D-galactarate dehydratase / Altronate hydrolase, C terminus C380_19510 PF08666 SAF domain C380_19515 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component C380_19525 PF03480 Bacterial extracellular solute-binding protein, family 7 C380_19530 PF08450 SMP-30/Gluconolactonase/LRE-like region C380_19535 PF01370 NAD dependent epimerase/dehydratase family C380_19540 PF07702 UTRA domain C380_19540 PF00392 Bacterial regulatory proteins, gntR family C380_19545 PF00171 Aldehyde dehydrogenase family C380_19555 PF00593 TonB dependent receptor C380_19555 PF07715 TonB-dependent Receptor Plug Domain C380_19565 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase C380_19565 PF00512 His Kinase A (phospho-acceptor) domain C380_19565 PF01627 Hpt domain C380_19565 PF00672 HAMP domain C380_19565 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) C380_19565 PF00072 Response regulator receiver domain C380_19570 PF00528 Binding-protein-dependent transport system inner membrane component C380_19575 PF08402 TOBE domain C380_19575 PF00005 ABC transporter C380_19610 PF01553 Acyltransferase C380_19615 PF01979 Amidohydrolase family C380_19620 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain C380_19620 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain C380_19625 PF00156 Phosphoribosyl transferase domain C380_19630 PF03652 Holliday junction resolvase C380_19635 PF02622 Uncharacterized ACR, COG1678 C380_19640 PF03441 FAD binding domain of DNA photolyase C380_19640 PF00875 DNA photolyase C380_19645 PF00437 Type II/IV secretion system protein C380_19650 PF00072 Response regulator receiver domain C380_19650 PF01627 Hpt domain C380_19650 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase C380_19650 PF01584 CheW-like domain C380_19655 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain C380_19655 PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term C380_19660 PF01584 CheW-like domain C380_19665 PF00072 Response regulator receiver domain C380_19670 PF00072 Response regulator receiver domain C380_19675 PF00301 Rubredoxin C380_19685 PF00202 Aminotransferase class-III C380_19690 PF01614 Bacterial transcriptional regulator C380_19690 PF09339 IclR helix-turn-helix domain C380_19695 PF01494 FAD binding domain C380_19700 PF00034 Cytochrome c C380_19705 PF02142 MGS-like domain C380_19705 PF01808 AICARFT/IMPCHase bienzyme C380_19710 PF02954 Bacterial regulatory protein, Fis family C380_19715 PF01207 Dihydrouridine synthase (Dus) C380_19725 PF09335 SNARE associated Golgi protein C380_19730 PF17158 Membrane-associated sensor, integral membrane domain C380_19730 PF00990 Diguanylate cyclase, GGDEF domain C380_19735 PF00892 EamA-like transporter family C380_19740 PF06071 Protein of unknown function (DUF933) C380_19740 PF01926 50S ribosome-binding GTPase C380_19745 PF00111 2Fe-2S iron-sulfur cluster binding domain C380_19745 PF03473 MOSC domain C380_19745 PF03476 MOSC N-terminal beta barrel domain C380_19750 PF01494 FAD binding domain C380_19755 PF10411 Disulfide bond isomerase protein N-terminus C380_19755 PF13098 Thioredoxin-like domain C380_19765 PF00378 Enoyl-CoA hydratase/isomerase C380_19775 PF00919 Uncharacterized protein family UPF0004 C380_19775 PF01938 TRAM domain C380_19775 PF04055 Radical SAM superfamily C380_19780 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase C380_19780 PF00512 His Kinase A (phospho-acceptor) domain C380_19790 PF00158 Sigma-54 interaction domain C380_19790 PF00072 Response regulator receiver domain C380_19795 PF04349 Periplasmic glucan biosynthesis protein, MdoG C380_19805 PF00448 SRP54-type protein, GTPase domain C380_19805 PF02881 SRP54-type protein, helical bundle domain C380_19805 PF02978 Signal peptide binding domain C380_19810 PF01578 Cytochrome C assembly protein C380_19820 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase C380_19820 PF00512 His Kinase A (phospho-acceptor) domain C380_19825 PF02954 Bacterial regulatory protein, Fis family C380_19825 PF00158 Sigma-54 interaction domain C380_19825 PF00072 Response regulator receiver domain C380_19830 PF01510 N-acetylmuramoyl-L-alanine amidase C380_19835 PF03477 ATP cone domain C380_19835 PF00317 Ribonucleotide reductase, all-alpha domain C380_19835 PF02867 Ribonucleotide reductase, barrel domain C380_19840 PF00268 Ribonucleotide reductase, small chain C380_19850 PF00294 pfkB family carbohydrate kinase C380_19865 PF00289 Biotin carboxylase, N-terminal domain C380_19865 PF02785 Biotin carboxylase C-terminal domain C380_19865 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain C380_19870 PF00364 Biotin-requiring enzyme C380_19875 PF00578 AhpC/TSA family C380_19885 PF08245 Mur ligase middle domain C380_19885 PF01225 Mur ligase family, catalytic domain C380_19885 PF02875 Mur ligase family, glutamate ligase domain C380_19895 PF00793 DAHP synthetase I family C380_19905 PF01523 Putative modulator of DNA gyrase C380_19910 PF07411 Domain of unknown function (DUF1508) C380_19915 PF01098 Cell cycle protein C380_19920 PF00069 Protein kinase domain C380_19920 PF03793 PASTA domain C380_19925 PF05728 Uncharacterised protein family (UPF0227) C380_19935 PF00773 RNB domain C380_19945 PF08501 Shikimate dehydrogenase substrate binding domain C380_19945 PF01488 Shikimate / quinate 5-dehydrogenase C380_19945 PF18317 Shikimate 5'-dehydrogenase C-terminal domain C380_19950 PF00912 Transglycosylase C380_19955 PF00067 Cytochrome P450 C380_19975 PF02075 Crossover junction endodeoxyribonuclease RuvC C380_19990 PF00296 Luciferase-like monooxygenase C380_20000 PF00482 Type II secretion system (T2SS), protein F C380_20025 PF00005 ABC transporter C380_20025 PF00664 ABC transporter transmembrane region C380_20030 PF02875 Mur ligase family, glutamate ligase domain C380_20030 PF08245 Mur ligase middle domain C380_20030 PF08443 RimK-like ATP-grasp domain C380_20035 PF02875 Mur ligase family, glutamate ligase domain C380_20035 PF08245 Mur ligase middle domain C380_20035 PF08443 RimK-like ATP-grasp domain C380_20040 PF05981 CreA protein C380_20045 PF01323 DSBA-like thioredoxin domain C380_20055 PF03401 Tripartite tricarboxylate transporter family receptor C380_20065 PF00158 Sigma-54 interaction domain C380_20065 PF00989 PAS fold C380_20065 PF02954 Bacterial regulatory protein, Fis family C380_20070 PF00501 AMP-binding enzyme C380_20070 PF13193 AMP-binding enzyme C-terminal domain C380_20075 PF02803 Thiolase, C-terminal domain C380_20075 PF00108 Thiolase, N-terminal domain C380_20105 PF03006 Haemolysin-III related C380_20115 PF00501 AMP-binding enzyme C380_20115 PF13193 AMP-binding enzyme C-terminal domain C380_20120 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain C380_20120 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain C380_20125 PF03401 Tripartite tricarboxylate transporter family receptor C380_20130 PF13545 Crp-like helix-turn-helix domain C380_20130 PF00027 Cyclic nucleotide-binding domain C380_20140 PF00501 AMP-binding enzyme C380_20140 PF13193 AMP-binding enzyme C-terminal domain C380_20155 PF01202 Shikimate kinase C380_20200 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family C380_20200 PF03466 LysR substrate binding domain C380_20205 PF01010 NADH-dehyrogenase subunit F, TMs, (complex I) C-terminus C380_20205 PF00361 Proton-conducting membrane transporter C380_20205 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus C380_20210 PF10070 Uncharacterized protein conserved in bacteria (DUF2309) C380_20220 PF07694 5TMR of 5TMR-LYT C380_20220 PF00990 Diguanylate cyclase, GGDEF domain C380_20225 PF12697 Alpha/beta hydrolase family C380_20230 PF01380 SIS domain C380_20235 PF01037 Lrp/AsnC ligand binding domain C380_20240 PF05230 MASE2 domain C380_20240 PF00990 Diguanylate cyclase, GGDEF domain C380_20245 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase C380_20245 PF00512 His Kinase A (phospho-acceptor) domain C380_20250 PF00132 Bacterial transferase hexapeptide (six repeats) C380_20250 PF12804 MobA-like NTP transferase domain C380_20255 PF00027 Cyclic nucleotide-binding domain C380_20255 PF13545 Crp-like helix-turn-helix domain C380_20265 PF02801 Beta-ketoacyl synthase, C-terminal domain C380_20265 PF00109 Beta-ketoacyl synthase, N-terminal domain C380_20285 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family C380_20285 PF03466 LysR substrate binding domain C380_20295 PF01551 Peptidase family M23 C380_20295 PF04225 Opacity-associated protein A LysM-like domain C380_20300 PF03702 Anhydro-N-acetylmuramic acid kinase C380_20305 PF07690 Major Facilitator Superfamily C380_20310 PF01521 Iron-sulphur cluster biosynthesis C380_20325 PF00380 Ribosomal protein S9/S16 C380_20330 PF00572 Ribosomal protein L13 C380_20335 PF00069 Protein kinase domain C380_20335 PF08308 PEGA domain C380_20340 PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ C380_20345 PF03330 Lytic transglycolase C380_20350 PF02219 Methylenetetrahydrofolate reductase C380_20355 PF01728 FtsJ-like methyltransferase C380_20355 PF01479 S4 domain C380_20360 PF00670 S-adenosyl-L-homocysteine hydrolase, NAD binding domain C380_20360 PF05221 S-adenosyl-L-homocysteine hydrolase C380_20365 PF00009 Elongation factor Tu GTP binding domain C380_20365 PF03144 Elongation factor Tu domain 2 C380_20365 PF16658 Class II release factor RF3, C-terminal domain C380_20390 PF05025 RbsD / FucU transport protein family C380_20395 PF00005 ABC transporter C380_20400 PF02653 Branched-chain amino acid transport system / permease component C380_20405 PF13407 Periplasmic binding protein domain C380_20410 PF00294 pfkB family carbohydrate kinase C380_20420 PF03401 Tripartite tricarboxylate transporter family receptor C380_20425 PF01037 Lrp/AsnC ligand binding domain C380_20425 PF13404 AsnC-type helix-turn-helix domain C380_20440 PF00005 ABC transporter C380_20440 PF17755 UvrA DNA-binding domain C380_20440 PF17760 UvrA interaction domain C380_20445 PF13458 Periplasmic binding protein C380_20450 PF13458 Periplasmic binding protein C380_20460 PF08946 Osmosensory transporter coiled coil C380_20460 PF00083 Sugar (and other) transporter C380_20465 PF01323 DSBA-like thioredoxin domain C380_20480 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion C380_20480 PF00529 HlyD membrane-fusion protein of T1SS C380_20485 PF00873 AcrB/AcrD/AcrF family C380_20490 PF02321 Outer membrane efflux protein C380_20495 PF00682 HMGL-like C380_20500 PF03466 LysR substrate binding domain C380_20500 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family C380_20505 PF18321 3-hydroxybutyryl-CoA dehydrogenase reduced Rossmann-fold domain C380_20505 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain C380_20505 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain C380_20510 PF05853 beta-keto acid cleavage enzyme C380_20515 PF03401 Tripartite tricarboxylate transporter family receptor C380_20520 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain C380_20525 PF00289 Biotin carboxylase, N-terminal domain C380_20525 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain C380_20525 PF00364 Biotin-requiring enzyme C380_20525 PF02785 Biotin carboxylase C-terminal domain C380_20535 PF00378 Enoyl-CoA hydratase/isomerase C380_20540 PF05163 DinB family C380_20545 PF01039 Carboxyl transferase domain C380_20550 PF13193 AMP-binding enzyme C-terminal domain C380_20550 PF00501 AMP-binding enzyme C380_20565 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family C380_20565 PF03466 LysR substrate binding domain C380_20570 PF03401 Tripartite tricarboxylate transporter family receptor C380_20575 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus C380_20575 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus C380_20595 PF13419 Haloacid dehalogenase-like hydrolase C380_20630 PF00072 Response regulator receiver domain C380_20630 PF00196 Bacterial regulatory proteins, luxR family C380_20635 PF08521 Two-component sensor kinase N-terminal C380_20635 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase C380_20635 PF00512 His Kinase A (phospho-acceptor) domain C380_20645 PF02771 Acyl-CoA dehydrogenase, N-terminal domain C380_20645 PF00441 Acyl-CoA dehydrogenase, C-terminal domain C380_20645 PF02770 Acyl-CoA dehydrogenase, middle domain C380_20660 PF02803 Thiolase, C-terminal domain C380_20660 PF00108 Thiolase, N-terminal domain C380_20665 PF06315 Isocitrate dehydrogenase kinase/phosphatase (AceK) C380_20670 PF00484 Carbonic anhydrase C380_20675 PF02770 Acyl-CoA dehydrogenase, middle domain C380_20675 PF00441 Acyl-CoA dehydrogenase, C-terminal domain C380_20675 PF02771 Acyl-CoA dehydrogenase, N-terminal domain C380_20685 PF13411 MerR HTH family regulatory protein C380_20690 PF16123 Hydroxyacylglutathione hydrolase C-terminus C380_20690 PF00753 Metallo-beta-lactamase superfamily C380_20695 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region C380_20695 PF01872 RibD C-terminal domain C380_20705 PF00072 Response regulator receiver domain C380_20705 PF01339 CheB methylesterase C380_20710 PF03975 CheD chemotactic sensory transduction C380_20715 PF01739 CheR methyltransferase, SAM binding domain C380_20715 PF03705 CheR methyltransferase, all-alpha domain C380_20720 PF01584 CheW-like domain C380_20725 PF01627 Hpt domain C380_20725 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase C380_20725 PF02895 Signal transducing histidine kinase, homodimeric domain C380_20725 PF09078 CheY binding C380_20725 PF01584 CheW-like domain C380_20730 PF01584 CheW-like domain C380_20730 PF00072 Response regulator receiver domain C380_20740 PF05384 Sensor protein DegS C380_20740 PF07730 Histidine kinase C380_20740 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase C380_20745 PF00072 Response regulator receiver domain C380_20745 PF00196 Bacterial regulatory proteins, luxR family C380_20750 PF01311 Bacterial export proteins, family 1 C380_20755 PF01313 Bacterial export proteins, family 3 C380_20760 PF00813 FliP family C380_20765 PF04347 Flagellar biosynthesis protein, FliO C380_20770 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term C380_20770 PF16973 Flagellar motor switch protein FliN N-terminal C380_20775 PF02154 Flagellar motor switch protein FliM C380_20775 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term C380_20780 PF03748 Flagellar basal body-associated protein FliL C380_20795 PF18269 T3SS EscN ATPase C-terminal domain C380_20795 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain C380_20805 PF14842 FliG N-terminal domain C380_20805 PF14841 FliG middle domain C380_20805 PF01706 FliG C-terminal domain C380_20810 PF01514 Secretory protein of YscJ/FliF family C380_20810 PF08345 Flagellar M-ring protein C-terminal C380_20835 PF02561 Flagellar protein FliS C380_20840 PF07195 Flagellar hook-associated protein 2 C-terminus C380_20840 PF02465 Flagellar hook-associated protein 2 N-terminus C380_20845 PF00669 Bacterial flagellin N-terminal helical region C380_20845 PF00700 Bacterial flagellin C-terminal helical region C380_20850 PF00700 Bacterial flagellin C-terminal helical region C380_20850 PF00669 Bacterial flagellin N-terminal helical region C380_20855 PF01618 MotA/TolQ/ExbB proton channel family C380_20860 PF00691 OmpA family C380_20860 PF13677 Membrane MotB of proton-channel complex MotA/MotB C380_20865 PF00072 Response regulator receiver domain C380_20870 PF04344 Chemotaxis phosphatase, CheZ C380_20875 PF01312 FlhB HrpN YscU SpaS Family C380_20880 PF00771 FHIPEP family C380_20885 PF00448 SRP54-type protein, GTPase domain C380_20895 PF04539 Sigma-70 region 3 C380_20895 PF04545 Sigma-70, region 4 C380_20895 PF04542 Sigma-70 region 2 C380_20915 PF00460 Flagella basal body rod protein C380_20920 PF06429 Flagellar basal body rod FlgEFG protein C-terminal C380_20920 PF00460 Flagella basal body rod protein C380_20925 PF13861 FlgD Tudor-like domain C380_20925 PF13860 FlgD Ig-like domain C380_20925 PF03963 Flagellar hook capping protein - N-terminal region C380_20930 PF06429 Flagellar basal body rod FlgEFG protein C-terminal C380_20930 PF00460 Flagella basal body rod protein C380_20930 PF07559 Flagellar basal body protein FlaE C380_20935 PF00460 Flagella basal body rod protein C380_20935 PF06429 Flagellar basal body rod FlgEFG protein C-terminal C380_20940 PF06429 Flagellar basal body rod FlgEFG protein C-terminal C380_20940 PF00460 Flagella basal body rod protein C380_20945 PF02107 Flagellar L-ring protein C380_20950 PF02119 Flagellar P-ring protein C380_20955 PF10135 Rod binding protein C380_20955 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase C380_20960 PF06429 Flagellar basal body rod FlgEFG protein C-terminal C380_20960 PF00460 Flagella basal body rod protein C380_20965 PF00669 Bacterial flagellin N-terminal helical region C380_20975 PF00155 Aminotransferase class I and II C380_20985 PF00892 EamA-like transporter family C380_20995 PF00155 Aminotransferase class I and II C380_21000 PF00043 Glutathione S-transferase, C-terminal domain C380_21000 PF13417 Glutathione S-transferase, N-terminal domain C380_21005 PF02567 Phenazine biosynthesis-like protein C380_21010 PF02567 Phenazine biosynthesis-like protein C380_21020 PF01810 LysE type translocator C380_21025 PF00291 Pyridoxal-phosphate dependent enzyme C380_21045 PF00501 AMP-binding enzyme C380_21045 PF13193 AMP-binding enzyme C-terminal domain C380_21050 PF13407 Periplasmic binding protein domain C380_21055 PF00005 ABC transporter C380_21060 PF02653 Branched-chain amino acid transport system / permease component C380_21065 PF00356 Bacterial regulatory proteins, lacI family C380_21070 PF00294 pfkB family carbohydrate kinase C380_21075 PF05025 RbsD / FucU transport protein family C380_21090 PF14718 Soluble lytic murein transglycosylase L domain C380_21090 PF01464 Transglycosylase SLT domain C380_21095 PF01812 5-formyltetrahydrofolate cyclo-ligase family C380_21100 PF02798 Glutathione S-transferase, N-terminal domain C380_21100 PF14497 Glutathione S-transferase, C-terminal domain C380_21115 PF01743 Poly A polymerase head domain C380_21115 PF01966 HD domain C380_21115 PF12627 Probable RNA and SrmB- binding site of polymerase A C380_21125 PF06532 Negative regulator of sigma F C380_21130 PF08281 Sigma-70, region 4 C380_21130 PF04542 Sigma-70 region 2 C380_21140 PF05114 Protein of unknown function (DUF692) C380_21155 PF00085 Thioredoxin C380_21160 PF02358 Trehalose-phosphatase C380_21165 PF00723 Glycosyl hydrolases family 15 C380_21170 PF00982 Glycosyltransferase family 20 C380_21185 PF00106 short chain dehydrogenase C380_21195 PF00171 Aldehyde dehydrogenase family C380_21205 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component C380_21215 PF03480 Bacterial extracellular solute-binding protein, family 7 C380_21240 PF00378 Enoyl-CoA hydratase/isomerase C380_21240 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain C380_21240 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain C380_21245 PF02441 Flavoprotein C380_21250 PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase C380_21255 PF00501 AMP-binding enzyme C380_21255 PF13193 AMP-binding enzyme C-terminal domain C380_21260 PF01799 [2Fe-2S] binding domain C380_21260 PF00111 2Fe-2S iron-sulfur cluster binding domain C380_21265 PF00941 FAD binding domain in molybdopterin dehydrogenase C380_21265 PF03450 CO dehydrogenase flavoprotein C-terminal domain C380_21270 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain C380_21270 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase C380_21275 PF03401 Tripartite tricarboxylate transporter family receptor C380_21280 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family C380_21280 PF03466 LysR substrate binding domain C380_21290 PF01171 PP-loop family C380_21300 PF00300 Histidine phosphatase superfamily (branch 1) C380_21305 PF14031 Putative serine dehydratase domain C380_21305 PF01168 Alanine racemase, N-terminal domain C380_21310 PF04116 Fatty acid hydroxylase superfamily C380_21315 PF05491 RuvB C-terminal winged helix domain C380_21315 PF05496 Holliday junction DNA helicase RuvB P-loop domain C380_21315 PF17864 RuvB AAA lid domain C380_21325 PF00194 Eukaryotic-type carbonic anhydrase C380_21330 PF01330 RuvA N terminal domain C380_21330 PF07499 RuvA, C-terminal domain C380_21335 PF02562 PhoH-like protein C380_21340 PF02130 Uncharacterized protein family UPF0054 C380_21345 PF01925 Sulfite exporter TauE/SafE C380_21355 PF00582 Universal stress protein family C380_21360 PF02580 D-Tyr-tRNA(Tyr) deacylase C380_21365 PF01545 Cation efflux family C380_21365 PF16916 Dimerisation domain of Zinc Transporter C380_21370 PF00512 His Kinase A (phospho-acceptor) domain C380_21370 PF00989 PAS fold C380_21370 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase C380_21370 PF08447 PAS fold C380_21370 PF13493 Domain of unknown function (DUF4118) C380_21370 PF13426 PAS domain C380_21375 PF00196 Bacterial regulatory proteins, luxR family C380_21375 PF00072 Response regulator receiver domain C380_21385 PF12796 Ankyrin repeats (3 copies) C380_21390 PF05598 Transposase domain (DUF772) C380_21395 PF13609 Gram-negative porin C380_21400 PF02515 CoA-transferase family III C380_21405 PF03401 Tripartite tricarboxylate transporter family receptor C380_21410 PF00561 alpha/beta hydrolase fold C380_21420 PF02803 Thiolase, C-terminal domain C380_21420 PF00108 Thiolase, N-terminal domain C380_21425 PF01638 HxlR-like helix-turn-helix C380_21430 PF00271 Helicase conserved C-terminal domain C380_21430 PF00270 DEAD/DEAH box helicase C380_21430 PF03880 DbpA RNA binding domain C380_21440 PF03707 Bacterial signalling protein N terminal repeat C380_21440 PF00563 EAL domain C380_21440 PF00990 Diguanylate cyclase, GGDEF domain C380_21445 PF10423 Bacterial AMP nucleoside phosphorylase N-terminus C380_21445 PF01048 Phosphorylase superfamily C380_21465 PF02272 DHHA1 domain C380_21465 PF01411 tRNA synthetases class II (A) C380_21465 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain C380_21475 PF13098 Thioredoxin-like domain C380_21475 PF02683 Cytochrome C biogenesis protein transmembrane region C380_21475 PF11412 Disulphide bond corrector protein DsbC C380_21480 PF00578 AhpC/TSA family C380_21485 PF13380 CoA binding domain C380_21490 PF01053 Cys/Met metabolism PLP-dependent enzyme C380_21495 PF09339 IclR helix-turn-helix domain C380_21495 PF01614 Bacterial transcriptional regulator C380_21500 PF00753 Metallo-beta-lactamase superfamily C380_21505 PF01494 FAD binding domain C380_21515 PF03401 Tripartite tricarboxylate transporter family receptor C380_21525 PF03741 Integral membrane protein TerC family C380_21530 PF03466 LysR substrate binding domain C380_21530 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family C380_21535 PF00884 Sulfatase C380_21550 PF05977 Transmembrane secretion effector C380_21555 PF01208 Uroporphyrinogen decarboxylase (URO-D) C380_21565 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit C380_21570 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit C380_21575 PF00270 DEAD/DEAH box helicase C380_21575 PF18319 PriA DNA helicase Cys-rich region (CRR) domain C380_21575 PF17764 3′ DNA-binding domain (3′BD) C380_21575 PF00271 Helicase conserved C-terminal domain C380_21575 PF18074 Primosomal protein N C-terminal domain C380_21590 PF03547 Membrane transport protein C380_21600 PF13361 UvrD-like helicase C-terminal domain C380_21600 PF00580 UvrD/REP helicase N-terminal domain C380_21610 PF02253 Phospholipase A1 C380_21625 PF01702 Queuine tRNA-ribosyltransferase C380_21635 PF00196 Bacterial regulatory proteins, luxR family C380_21635 PF00072 Response regulator receiver domain C380_21640 PF17151 Periplasmic sensor domain C380_21640 PF00990 Diguanylate cyclase, GGDEF domain C380_21665 PF03435 Saccharopine dehydrogenase NADP binding domain C380_21670 PF00892 EamA-like transporter family C380_21675 PF01037 Lrp/AsnC ligand binding domain C380_21680 PF00291 Pyridoxal-phosphate dependent enzyme C380_21685 PF03401 Tripartite tricarboxylate transporter family receptor C380_21690 PF00501 AMP-binding enzyme C380_21690 PF01553 Acyltransferase C380_21705 PF17754 MftR C-terminal domain C380_21705 PF00440 Bacterial regulatory proteins, tetR family C380_21715 PF03109 ABC1 family C380_21740 PF01266 FAD dependent oxidoreductase C380_21745 PF13442 Cytochrome C oxidase, cbb3-type, subunit III C380_21745 PF00034 Cytochrome c C380_21760 PF00571 CBS domain C380_21760 PF03471 Transporter associated domain C380_21760 PF01595 Cyclin M transmembrane N-terminal domain C380_21765 PF08495 FIST N domain C380_21765 PF10442 FIST C domain C380_21775 PF04314 Copper chaperone PCu(A)C C380_21795 PF14497 Glutathione S-transferase, C-terminal domain C380_21795 PF13417 Glutathione S-transferase, N-terminal domain C380_21815 PF01914 MarC family integral membrane protein C380_21820 PF02082 Transcriptional regulator C380_21825 PF03466 LysR substrate binding domain C380_21825 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family C380_21830 PF01196 Ribosomal protein L17 C380_21835 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain C380_21835 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain C380_21835 PF01000 RNA polymerase Rpb3/RpoA insert domain C380_21840 PF00163 Ribosomal protein S4/S9 N-terminal domain C380_21840 PF01479 S4 domain C380_21845 PF00411 Ribosomal protein S11 C380_21850 PF00416 Ribosomal protein S13/S18 C380_21855 PF00444 Ribosomal protein L36 C380_21860 PF00344 SecY translocase C380_21865 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A C380_21870 PF00327 Ribosomal protein L30p/L7e C380_21875 PF00333 Ribosomal protein S5, N-terminal domain C380_21875 PF03719 Ribosomal protein S5, C-terminal domain C380_21880 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast C380_21885 PF00347 Ribosomal protein L6 C380_21890 PF00410 Ribosomal protein S8 C380_21895 PF00253 Ribosomal protein S14p/S29e C380_21900 PF00673 ribosomal L5P family C-terminus C380_21900 PF00281 Ribosomal protein L5 C380_21905 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 C380_21910 PF00238 Ribosomal protein L14p/L23e C380_21915 PF16901 C-terminal domain of alpha-glycerophosphate oxidase C380_21915 PF01266 FAD dependent oxidoreductase C380_21930 PF00528 Binding-protein-dependent transport system inner membrane component C380_21935 PF00528 Binding-protein-dependent transport system inner membrane component C380_21940 PF00005 ABC transporter C380_21940 PF08402 TOBE domain C380_21945 PF17912 MalK OB fold domain C380_21945 PF00005 ABC transporter C380_21950 PF00455 DeoR C terminal sensor domain C380_21950 PF08220 DeoR-like helix-turn-helix domain C380_21955 PF02782 FGGY family of carbohydrate kinases, C-terminal domain C380_21955 PF00370 FGGY family of carbohydrate kinases, N-terminal domain C380_21960 PF14748 Pyrroline-5-carboxylate reductase dimerisation C380_21960 PF03807 NADP oxidoreductase coenzyme F420-dependent C380_21965 PF01040 UbiA prenyltransferase family C380_21970 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) C380_21970 PF01627 Hpt domain C380_21970 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase C380_21970 PF00672 HAMP domain C380_21970 PF00072 Response regulator receiver domain C380_21970 PF00512 His Kinase A (phospho-acceptor) domain C380_21975 PF01739 CheR methyltransferase, SAM binding domain C380_21975 PF03705 CheR methyltransferase, all-alpha domain C380_21980 PF01339 CheB methylesterase C380_21985 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase C380_21985 PF00672 HAMP domain C380_21985 PF18698 Histidine kinase sensor domain C380_21985 PF00512 His Kinase A (phospho-acceptor) domain C380_21985 PF00989 PAS fold C380_21990 PF00486 Transcriptional regulatory protein, C terminal C380_21990 PF00072 Response regulator receiver domain C380_21995 PF00210 Ferritin-like domain C380_22005 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family C380_22005 PF03466 LysR substrate binding domain C380_22010 PF00271 Helicase conserved C-terminal domain C380_22010 PF00270 DEAD/DEAH box helicase C380_22010 PF17191 RecG wedge domain C380_22015 PF01966 HD domain C380_22015 PF11871 Domain of unknown function (DUF3391) C380_22020 PF00294 pfkB family carbohydrate kinase C380_22025 PF02547 Queuosine biosynthesis protein C380_22040 PF03401 Tripartite tricarboxylate transporter family receptor C380_22045 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family C380_22045 PF03466 LysR substrate binding domain C380_22055 PF03167 Uracil DNA glycosylase superfamily C380_22060 PF00218 Indole-3-glycerol phosphate synthase C380_22070 PF00591 Glycosyl transferase family, a/b domain C380_22070 PF02885 Glycosyl transferase family, helical bundle domain C380_22075 PF01810 LysE type translocator C380_22080 PF00117 Glutamine amidotransferase class-I C380_22090 PF00425 chorismate binding enzyme C380_22090 PF04715 Anthranilate synthase component I, N terminal region C380_22100 PF02203 Tar ligand binding domain homologue C380_22100 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain C380_22100 PF00672 HAMP domain C380_22105 PF13419 Haloacid dehalogenase-like hydrolase C380_22135 PF00834 Ribulose-phosphate 3 epimerase family C380_22140 PF04379 ApaG domain C380_22155 PF04107 Glutamate-cysteine ligase family 2(GCS2) C380_22160 PF02769 AIR synthase related protein, C-terminal domain C380_22160 PF00586 AIR synthase related protein, N-terminal domain C380_22170 PF08281 Sigma-70, region 4 C380_22170 PF04542 Sigma-70 region 2 C380_22175 PF00175 Oxidoreductase NAD-binding domain C380_22175 PF00970 Oxidoreductase FAD-binding domain C380_22175 PF00111 2Fe-2S iron-sulfur cluster binding domain C380_22190 PF03466 LysR substrate binding domain C380_22190 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family C380_22200 PF00582 Universal stress protein family C380_22205 PF04608 Phosphatidylglycerophosphatase A C380_22210 PF02464 Competence-damaged protein C380_22215 PF00561 alpha/beta hydrolase fold C380_22230 PF01043 SecA preprotein cross-linking domain C380_22230 PF07516 SecA Wing and Scaffold domain C380_22230 PF07517 SecA DEAD-like domain C380_22230 PF02810 SEC-C motif C380_22235 PF01645 Conserved region in glutamate synthase C380_22260 PF02926 THUMP domain C380_22260 PF01170 Putative RNA methylase family UPF0020 C380_22270 PF04963 Sigma-54 factor, core binding domain C380_22270 PF04552 Sigma-54, DNA binding domain C380_22270 PF00309 Sigma-54 factor, Activator interacting domain (AID) C380_22275 PF00005 ABC transporter C380_22285 PF13462 Thioredoxin C380_22295 PF05746 DALR anticodon binding domain C380_22295 PF00750 tRNA synthetases class I (R) C380_22295 PF03485 Arginyl tRNA synthetase N terminal domain C380_22315 PF00375 Sodium:dicarboxylate symporter family C380_22320 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase C380_22320 PF02743 Cache domain C380_22320 PF00512 His Kinase A (phospho-acceptor) domain C380_22330 PF00196 Bacterial regulatory proteins, luxR family C380_22330 PF00072 Response regulator receiver domain C380_22335 PF03466 LysR substrate binding domain C380_22335 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family C380_22340 PF01144 Coenzyme A transferase C380_22345 PF01274 Malate synthase C380_22355 PF01361 Tautomerase enzyme C380_22360 PF07690 Major Facilitator Superfamily C380_22365 PF13230 Glutamine amidotransferases class-II C380_22370 PF02951 Prokaryotic glutathione synthetase, N-terminal domain C380_22370 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain C380_22375 PF03594 Benzoate membrane transport protein C380_22380 PF02705 K+ potassium transporter C380_22390 PF02386 Cation transport protein C380_22395 PF02080 TrkA-C domain C380_22395 PF02254 TrkA-N domain C380_22400 PF00171 Aldehyde dehydrogenase family C380_22420 PF00491 Arginase family C380_22430 PF09334 tRNA synthetases class I (M) C380_22430 PF13603 Leucyl-tRNA synthetase, Domain 2 C380_22430 PF00133 tRNA synthetases class I (I, L, M and V) C380_22430 PF08264 Anticodon-binding domain of tRNA C380_22435 PF02472 Biopolymer transport protein ExbD/TolR C380_22440 PF01618 MotA/TolQ/ExbB proton channel family C380_22445 PF05173 Dihydrodipicolinate reductase, C-terminus C380_22445 PF01113 Dihydrodipicolinate reductase, N-terminus C380_22450 PF04355 SmpA / OmlA family C380_22455 PF01475 Ferric uptake regulator family C380_22460 PF02603 HPr Serine kinase N terminus C380_22460 PF07475 HPr Serine kinase C-terminal domain C380_22465 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 C380_22470 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein C380_22475 PF07690 Major Facilitator Superfamily C380_22480 PF01259 SAICAR synthetase C380_22485 PF00085 Thioredoxin C380_22490 PF00731 AIR carboxylase C380_22495 PF02222 ATP-grasp domain C380_22495 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain C380_22500 PF03481 Putative GTP-binding controlling metal-binding C380_22500 PF01300 Telomere recombination C380_22520 PF13276 HTH-like domain C380_22520 PF13333 Integrase core domain C380_22520 PF00665 Integrase core domain C380_22540 PF04193 PQ loop repeat C380_22555 PF00814 Glycoprotease family C380_22570 PF01544 CorA-like Mg2+ transporter protein C380_22575 PF01048 Phosphorylase superfamily C380_22580 PF13193 AMP-binding enzyme C-terminal domain C380_22580 PF00501 AMP-binding enzyme C380_22585 PF02233 NAD(P) transhydrogenase beta subunit C380_22590 PF01262 Alanine dehydrogenase/PNT, C-terminal domain C380_22590 PF05222 Alanine dehydrogenase/PNT, N-terminal domain C380_22590 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch C380_22600 PF01116 Fructose-bisphosphate aldolase class-II C380_22605 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase C380_22605 PF00512 His Kinase A (phospho-acceptor) domain C380_22610 PF00072 Response regulator receiver domain C380_22610 PF00486 Transcriptional regulatory protein, C terminal C380_22620 PF01569 PAP2 superfamily C380_22625 PF02887 Pyruvate kinase, alpha/beta domain C380_22625 PF00224 Pyruvate kinase, barrel domain C380_22635 PF05195 Aminopeptidase P, N-terminal domain C380_22635 PF00557 Metallopeptidase family M24 C380_22640 PF00483 Nucleotidyl transferase C380_22645 PF02675 S-adenosylmethionine decarboxylase C380_22650 PF00456 Transketolase, thiamine diphosphate binding domain C380_22650 PF02780 Transketolase, C-terminal domain C380_22650 PF02779 Transketolase, pyrimidine binding domain C380_22655 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain C380_22655 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain C380_22660 PF00924 Mechanosensitive ion channel C380_22670 PF00691 OmpA family C380_22670 PF05736 OprF membrane domain C380_22675 PF00248 Aldo/keto reductase family C380_22685 PF01494 FAD binding domain C380_22690 PF00574 Clp protease C380_22695 PF01408 Oxidoreductase family, NAD-binding Rossmann fold C380_22700 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase C380_22705 PF07746 Aromatic-ring-opening dioxygenase LigAB, LigA subunit C380_22710 PF04909 Amidohydrolase C380_22715 PF03401 Tripartite tricarboxylate transporter family receptor C380_22720 PF03737 Aldolase/RraA C380_22725 PF04909 Amidohydrolase C380_22735 PF03466 LysR substrate binding domain C380_22735 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family C380_22745 PF03401 Tripartite tricarboxylate transporter family receptor C380_22750 PF00005 ABC transporter C380_22755 PF12399 Branched-chain amino acid ATP-binding cassette transporter C380_22755 PF00005 ABC transporter C380_22765 PF11862 Domain of unknown function (DUF3382) C380_22765 PF02653 Branched-chain amino acid transport system / permease component C380_22770 PF13458 Periplasmic binding protein C380_22780 PF00355 Rieske [2Fe-2S] domain C380_22785 PF00175 Oxidoreductase NAD-binding domain C380_22785 PF00111 2Fe-2S iron-sulfur cluster binding domain C380_22795 PF07722 Peptidase C26 C380_22800 PF03466 LysR substrate binding domain C380_22800 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family C380_22810 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase C380_22830 PF02798 Glutathione S-transferase, N-terminal domain C380_22835 PF03466 LysR substrate binding domain C380_22835 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family C380_22850 PF05726 Pirin C-terminal cupin domain C380_22850 PF02678 Pirin C380_22855 PF07690 Major Facilitator Superfamily C380_22870 PF06983 3-demethylubiquinone-9 3-methyltransferase C380_22880 PF13280 WYL domain C380_22880 PF08279 HTH domain C380_22895 PF00106 short chain dehydrogenase C380_22900 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family C380_22900 PF03466 LysR substrate binding domain C380_22910 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family C380_22910 PF03466 LysR substrate binding domain C380_22930 PF00072 Response regulator receiver domain C380_22930 PF00486 Transcriptional regulatory protein, C terminal C380_22935 PF00512 His Kinase A (phospho-acceptor) domain C380_22935 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase C380_22935 PF00672 HAMP domain C380_22940 PF01590 GAF domain C380_22940 PF00158 Sigma-54 interaction domain C380_22940 PF02954 Bacterial regulatory protein, Fis family C380_22945 PF00171 Aldehyde dehydrogenase family C380_22955 PF00672 HAMP domain C380_22955 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain C380_22955 PF02203 Tar ligand binding domain homologue C380_22965 PF00892 EamA-like transporter family C380_22975 PF03401 Tripartite tricarboxylate transporter family receptor C380_22980 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family C380_22980 PF03466 LysR substrate binding domain C380_22985 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family C380_22990 PF00162 Phosphoglycerate kinase C380_23005 PF02911 Formyl transferase, C-terminal domain C380_23005 PF00551 Formyl transferase C380_23015 PF01327 Polypeptide deformylase C380_23025 PF17782 DprA winged helix domain C380_23025 PF02481 DNA recombination-mediator protein A C380_23035 PF02355 Protein export membrane protein C380_23035 PF07549 SecD/SecF GG Motif C380_23040 PF07549 SecD/SecF GG Motif C380_23040 PF13721 SecD export protein N-terminal TM region C380_23040 PF02355 Protein export membrane protein C380_23045 PF02699 Preprotein translocase subunit C380_23055 PF01037 Lrp/AsnC ligand binding domain C380_23070 PF00691 OmpA family C380_23075 PF00072 Response regulator receiver domain C380_23075 PF00196 Bacterial regulatory proteins, luxR family C380_23080 PF00989 PAS fold C380_23080 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase C380_23080 PF00512 His Kinase A (phospho-acceptor) domain C380_23085 PF00795 Carbon-nitrogen hydrolase C380_23095 PF08335 GlnD PII-uridylyltransferase C380_23095 PF03710 Glutamate-ammonia ligase adenylyltransferase C380_23100 PF00440 Bacterial regulatory proteins, tetR family C380_23105 PF02321 Outer membrane efflux protein C380_23110 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion C380_23115 PF00873 AcrB/AcrD/AcrF family C380_23125 PF00255 Glutathione peroxidase C380_23160 PF00106 short chain dehydrogenase C380_23175 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily C380_23180 PF08501 Shikimate dehydrogenase substrate binding domain C380_23180 PF18317 Shikimate 5'-dehydrogenase C-terminal domain C380_23185 PF03480 Bacterial extracellular solute-binding protein, family 7 C380_23190 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component C380_23195 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component C380_23200 PF00440 Bacterial regulatory proteins, tetR family C380_23200 PF17938 Tetracyclin repressor-like, C-terminal domain C380_23205 PF13417 Glutathione S-transferase, N-terminal domain C380_23205 PF00043 Glutathione S-transferase, C-terminal domain C380_23210 PF00206 Lyase C380_23210 PF08328 Adenylosuccinate lyase C-terminal C380_23215 PF07152 YaeQ protein C380_23230 PF03741 Integral membrane protein TerC family C380_23240 PF04020 Mycobacterial 4 TMS phage holin, superfamily IV C380_23245 PF01435 Peptidase family M48 C380_23245 PF07720 Tetratricopeptide repeat C380_23250 PF01967 MoaC family C380_23265 PF00114 Pilin (bacterial filament) C380_23265 PF07963 Prokaryotic N-terminal methylation motif C380_23275 PF00211 Adenylate and Guanylate cyclase catalytic domain C380_23280 PF00498 FHA domain C380_23290 PF03793 PASTA domain C380_23290 PF00069 Protein kinase domain C380_23295 PF03741 Integral membrane protein TerC family C380_23300 PF02629 CoA binding domain C380_23300 PF00549 CoA-ligase C380_23305 PF08442 ATP-grasp domain C380_23305 PF00549 CoA-ligase C380_23310 PF01118 Semialdehyde dehydrogenase, NAD binding domain C380_23315 PF02631 RecX family C380_23320 PF00154 recA bacterial DNA recombination protein C380_23330 PF03466 LysR substrate binding domain C380_23330 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family C380_23335 PF03401 Tripartite tricarboxylate transporter family receptor C380_23345 PF00486 Transcriptional regulatory protein, C terminal C380_23345 PF00072 Response regulator receiver domain C380_23350 PF08521 Two-component sensor kinase N-terminal C380_23350 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase C380_23350 PF00512 His Kinase A (phospho-acceptor) domain C380_23370 PF02237 Biotin protein ligase C terminal domain C380_23370 PF03099 Biotin/lipoate A/B protein ligase family C380_23370 PF08279 HTH domain C380_23380 PF01751 Toprim domain C380_23380 PF01131 DNA topoisomerase C380_23405 PF13350 Tyrosine phosphatase family C380_23410 PF07690 Major Facilitator Superfamily C380_23415 PF01613 Flavin reductase like domain C380_23455 PF17760 UvrA interaction domain C380_23455 PF17755 UvrA DNA-binding domain C380_23460 PF07690 Major Facilitator Superfamily C380_23465 PF00436 Single-strand binding protein family C380_23485 PF03466 LysR substrate binding domain C380_23485 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family C380_23490 PF04303 PrpF protein C380_23495 PF03401 Tripartite tricarboxylate transporter family receptor C380_23500 PF13609 Gram-negative porin C380_23505 PF02652 L-lactate permease C380_23510 PF03466 LysR substrate binding domain C380_23510 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family C380_23535 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family C380_23535 PF03466 LysR substrate binding domain C380_23540 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain C380_23540 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain C380_23540 PF00205 Thiamine pyrophosphate enzyme, central domain C380_23545 PF00171 Aldehyde dehydrogenase family C380_23550 PF02558 Ketopantoate reductase PanE/ApbA C380_23550 PF08546 Ketopantoate reductase PanE/ApbA C terminal C380_23555 PF03401 Tripartite tricarboxylate transporter family receptor C380_23560 PF01070 FMN-dependent dehydrogenase C380_23570 PF00677 Lumazine binding domain C380_23590 PF00072 Response regulator receiver domain C380_23595 PF00072 Response regulator receiver domain C380_23595 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase C380_23595 PF00512 His Kinase A (phospho-acceptor) domain C380_23595 PF01627 Hpt domain C380_23625 PF00460 Flagella basal body rod protein C380_23625 PF06429 Flagellar basal body rod FlgEFG protein C-terminal C380_23630 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family C380_23630 PF03466 LysR substrate binding domain C380_23635 PF00202 Aminotransferase class-III C380_23645 PF00171 Aldehyde dehydrogenase family C380_23650 PF00390 Malic enzyme, N-terminal domain C380_23650 PF03949 Malic enzyme, NAD binding domain C380_23650 PF01515 Phosphate acetyl/butaryl transferase C380_23655 PF00545 ribonuclease C380_23670 PF00398 Ribosomal RNA adenine dimethylase C380_23675 PF09312 SurA N-terminal domain C380_23675 PF00639 PPIC-type PPIASE domain C380_23680 PF04453 LPS transport system D C380_23685 PF01636 Phosphotransferase enzyme family C380_23690 PF04452 RNA methyltransferase C380_23695 PF00990 Diguanylate cyclase, GGDEF domain C380_23695 PF08448 PAS fold C380_23705 PF02770 Acyl-CoA dehydrogenase, middle domain C380_23705 PF00441 Acyl-CoA dehydrogenase, C-terminal domain C380_23705 PF02771 Acyl-CoA dehydrogenase, N-terminal domain C380_23720 PF13193 AMP-binding enzyme C-terminal domain C380_23720 PF00501 AMP-binding enzyme C380_23725 PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase C380_23730 PF02441 Flavoprotein C380_23745 PF03006 Haemolysin-III related C380_23765 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family C380_23765 PF03466 LysR substrate binding domain C380_23780 PF12146 Serine aminopeptidase, S33 C380_23790 PF00563 EAL domain C380_23790 PF00360 Phytochrome region C380_23790 PF01590 GAF domain C380_23790 PF00990 Diguanylate cyclase, GGDEF domain C380_23795 PF02203 Tar ligand binding domain homologue C380_23795 PF00672 HAMP domain C380_23795 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain C380_23800 PF01261 Xylose isomerase-like TIM barrel C380_23805 PF03009 Glycerophosphoryl diester phosphodiesterase family C380_23810 PF07021 Methionine biosynthesis protein MetW C380_23810 PF00561 alpha/beta hydrolase fold C380_23815 PF00561 alpha/beta hydrolase fold C380_23820 PF01169 Uncharacterized protein family UPF0016 C380_23825 PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) C380_23830 PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) C380_23835 PF00106 short chain dehydrogenase C380_23850 PF00571 CBS domain C380_23850 PF01380 SIS domain C380_23855 PF00999 Sodium/hydrogen exchanger family C380_23855 PF02080 TrkA-C domain C380_23855 PF02254 TrkA-N domain C380_23860 PF00990 Diguanylate cyclase, GGDEF domain C380_23860 PF00563 EAL domain C380_23860 PF03707 Bacterial signalling protein N terminal repeat C380_23865 PF00156 Phosphoribosyl transferase domain C380_23880 PF01926 50S ribosome-binding GTPase C380_23880 PF12631 MnmE helical domain C380_23880 PF10396 GTP-binding protein TrmE N-terminus C380_23885 PF00665 Integrase core domain C380_23885 PF13333 Integrase core domain C380_23885 PF13276 HTH-like domain C380_23895 PF14849 YidC periplasmic domain C380_23895 PF02096 60Kd inner membrane protein C380_23900 PF01809 Putative membrane protein insertion efficiency factor C380_23905 PF00825 Ribonuclease P C380_23910 PF00468 Ribosomal protein L34