C380_00005 SM00382 ATPases associated with a variety of cellular activities C380_00005 SM00760 Bacterial dnaA protein helix-turn-helix domain C380_00010 SM00480 DNA polymerase III beta subunit C380_00015 SM00387 Histidine kinase-like ATPases C380_00015 SM00433 TopoisomeraseII C380_00055 SM00448 cheY-homologous receiver domain C380_00055 SM00862 Transcriptional regulatory protein, C terminal C380_00060 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain C380_00060 SM00387 Histidine kinase-like ATPases C380_00060 SM00388 His Kinase A (phosphoacceptor) domain C380_00100 SM00345 helix_turn_helix gluconate operon transcriptional repressor C380_00120 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. C380_00120 SM00267 diguanylate cyclase C380_00125 SM00729 Elongator protein 3, MiaB family, Radical SAM C380_00150 SM00487 DEAD-like helicases superfamily C380_00150 SM00491 C380_00150 C380_00180 SM00479 C380_00180 C380_00230 SM00917 LeuA allosteric (dimerisation) domain C380_00285 SM00422 helix_turn_helix, mercury resistance C380_00290 SM00052 Putative diguanylate phosphodiesterase C380_00290 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. C380_00290 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) C380_00290 SM00091 PAS domain C380_00290 SM00267 diguanylate cyclase C380_00330 SM00382 ATPases associated with a variety of cellular activities C380_00350 SM00382 ATPases associated with a variety of cellular activities C380_00360 SM00487 DEAD-like helicases superfamily C380_00370 SM00530 Helix-turn-helix XRE-family like proteins C380_00395 SM00422 helix_turn_helix, mercury resistance C380_00410 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). C380_00410 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain C380_00435 SM01007 Class II Aldolase and Adducin N-terminal domain C380_00500 SM00470 ParB-like nuclease domain C380_00540 SM00903 Flavin reductase like domain C380_00545 SM00342 helix_turn_helix, arabinose operon control protein C380_00585 SM00487 DEAD-like helicases superfamily C380_00585 SM00490 helicase superfamily c-terminal domain C380_00615 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor C380_00670 SM00345 helix_turn_helix gluconate operon transcriptional repressor C380_00670 SM00895 C380_00670 C380_00675 SM00062 Bacterial periplasmic substrate-binding proteins C380_00690 SM00382 ATPases associated with a variety of cellular activities C380_00800 SM00267 diguanylate cyclase C380_00835 SM00903 Flavin reductase like domain C380_00870 SM00554 Four repeated domains in the Fasciclin I family of proteins, present in many other contexts. C380_00875 SM00554 Four repeated domains in the Fasciclin I family of proteins, present in many other contexts. C380_00920 SM00382 ATPases associated with a variety of cellular activities C380_00935 SM00341 Helicase and RNase D C-terminal C380_00935 SM00487 DEAD-like helicases superfamily C380_00935 SM00490 helicase superfamily c-terminal domain C380_00935 SM00956 C380_00935 C380_01030 SM00839 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase C380_01050 SM00342 helix_turn_helix, arabinose operon control protein C380_01075 SM01018 B12 binding domain C380_01090 SM00267 diguanylate cyclase C380_01175 SM00382 ATPases associated with a variety of cellular activities C380_01180 SM00382 ATPases associated with a variety of cellular activities C380_01195 SM01008 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain C380_01220 SM00344 helix_turn_helix ASNC type C380_01235 SM00342 helix_turn_helix, arabinose operon control protein C380_01300 SM00347 helix_turn_helix multiple antibiotic resistance protein C380_01315 SM00382 ATPases associated with a variety of cellular activities C380_01325 SM00421 helix_turn_helix, Lux Regulon C380_01340 SM00052 Putative diguanylate phosphodiesterase C380_01340 SM00267 diguanylate cyclase C380_01340 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain C380_01355 SM00382 ATPases associated with a variety of cellular activities C380_01365 SM00938 Nitrogen regulatory protein P-II C380_01390 SM00357 Cold shock protein domain C380_01395 SM00945 ProQ/FINO family C380_01400 SM00871 Bacterial transcription activator, effector binding domain C380_01415 SM00850 LytTr DNA-binding domain C380_01445 SM01005 Alanine racemase, C-terminal domain C380_01455 SM00347 helix_turn_helix multiple antibiotic resistance protein C380_01495 SM00382 ATPases associated with a variety of cellular activities C380_01545 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain C380_01545 SM00387 Histidine kinase-like ATPases C380_01545 SM00388 His Kinase A (phosphoacceptor) domain C380_01550 SM00448 cheY-homologous receiver domain C380_01550 SM00862 Transcriptional regulatory protein, C terminal C380_01565 SM00849 Metallo-beta-lactamase superfamily C380_01570 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) C380_01570 SM00091 PAS domain C380_01570 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). C380_01575 SM00260 Two component signalling adaptor domain C380_01580 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. C380_01585 SM00448 cheY-homologous receiver domain C380_01590 SM00382 ATPases associated with a variety of cellular activities C380_01610 SM00845 GatB domain C380_01650 SM00382 ATPases associated with a variety of cellular activities C380_01660 SM00062 Bacterial periplasmic substrate-binding proteins C380_01695 SM00382 ATPases associated with a variety of cellular activities C380_01740 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. C380_01740 SM00267 diguanylate cyclase C380_01760 SM00387 Histidine kinase-like ATPases C380_01760 SM00388 His Kinase A (phosphoacceptor) domain C380_01765 SM00448 cheY-homologous receiver domain C380_01765 SM00862 Transcriptional regulatory protein, C terminal C380_01795 SM01004 Delta-aminolevulinic acid dehydratase C380_01820 SM00936 Penicillin-binding protein 5, C-terminal domain C380_01835 SM00838 Elongation factor G C-terminus C380_01835 SM00889 Elongation factor G, domain IV C380_01845 SM01403 C380_01845 C380_01865 SM01382 C380_01865 C380_01865 SM01383 C380_01865 C380_01880 SM00322 K homology RNA-binding domain C380_01955 SM00342 helix_turn_helix, arabinose operon control protein C380_01960 SM00729 Elongator protein 3, MiaB family, Radical SAM C380_02010 SM00382 ATPases associated with a variety of cellular activities C380_02095 SM00738 In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold. C380_02095 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. C380_02100 SM00649 Ribosomal protein L11/L12 C380_02125 SM00663 RNA polymerase I subunit A N-terminus C380_02145 SM00091 PAS domain C380_02145 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain C380_02145 SM00387 Histidine kinase-like ATPases C380_02145 SM00388 His Kinase A (phosphoacceptor) domain C380_02150 SM00448 cheY-homologous receiver domain C380_02210 SM00749 bacterial OsmY and nodulation domain C380_02225 SM00100 Cyclic nucleotide-monophosphate binding domain C380_02230 SM00382 ATPases associated with a variety of cellular activities C380_02260 SM00878 Biotin carboxylase C-terminal domain C380_02270 SM00342 helix_turn_helix, arabinose operon control protein C380_02310 SM00052 Putative diguanylate phosphodiesterase C380_02310 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) C380_02310 SM00091 PAS domain C380_02310 SM00267 diguanylate cyclase C380_02320 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain C380_02320 SM00387 Histidine kinase-like ATPases C380_02325 SM00421 helix_turn_helix, Lux Regulon C380_02325 SM00448 cheY-homologous receiver domain C380_02340 SM00926 Molybdopterin oxidoreductase Fe4S4 domain C380_02365 SM00947 Carbonic anhydrase C380_02405 SM00346 helix_turn_helix isocitrate lyase regulation C380_02425 SM00829 Enoylreductase C380_02450 SM00926 Molybdopterin oxidoreductase Fe4S4 domain C380_02550 SM00345 helix_turn_helix gluconate operon transcriptional repressor C380_02550 SM00866 C380_02550 C380_02580 SM00382 ATPases associated with a variety of cellular activities C380_02585 SM00382 ATPases associated with a variety of cellular activities C380_02595 SM00382 ATPases associated with a variety of cellular activities C380_02615 SM00342 helix_turn_helix, arabinose operon control protein C380_02625 SM00344 helix_turn_helix ASNC type C380_02655 SM00347 helix_turn_helix multiple antibiotic resistance protein C380_02685 SM00382 ATPases associated with a variety of cellular activities C380_02705 SM00382 ATPases associated with a variety of cellular activities C380_02715 SM00382 ATPases associated with a variety of cellular activities C380_02730 SM00100 Cyclic nucleotide-monophosphate binding domain C380_02730 SM00419 helix_turn_helix, cAMP Regulatory protein C380_02735 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). C380_02735 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain C380_02750 SM00052 Putative diguanylate phosphodiesterase C380_02750 SM00267 diguanylate cyclase C380_02750 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain C380_02755 SM00363 S4 RNA-binding domain C380_02770 SM00387 Histidine kinase-like ATPases C380_02780 SM00448 cheY-homologous receiver domain C380_02780 SM00862 Transcriptional regulatory protein, C terminal C380_02795 SM00220 Serine/Threonine protein kinases, catalytic domain C380_02815 SM00347 helix_turn_helix multiple antibiotic resistance protein C380_02840 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. C380_02855 SM00091 PAS domain C380_02860 SM00421 helix_turn_helix, Lux Regulon C380_02860 SM00448 cheY-homologous receiver domain C380_02875 SM00382 ATPases associated with a variety of cellular activities C380_02880 SM01116 C380_02880 C380_02915 SM00450 Rhodanese Homology Domain C380_02920 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. C380_02920 SM00382 ATPases associated with a variety of cellular activities C380_02945 SM00052 Putative diguanylate phosphodiesterase C380_02945 SM00267 diguanylate cyclase C380_02950 SM00382 ATPases associated with a variety of cellular activities C380_02975 SM00344 helix_turn_helix ASNC type C380_02985 SM00116 Domain in cystathionine beta-synthase and other proteins. C380_02985 SM01091 Transporter associated domain C380_03000 SM00825 Beta-ketoacyl synthase C380_03010 SM00870 C380_03010 C380_03030 SM00563 Phosphate acyltransferases C380_03040 SM00450 Rhodanese Homology Domain C380_03045 SM00257 Lysin motif C380_03105 SM00382 ATPases associated with a variety of cellular activities C380_03215 SM00382 ATPases associated with a variety of cellular activities C380_03220 SM00382 ATPases associated with a variety of cellular activities C380_03245 SM00448 cheY-homologous receiver domain C380_03245 SM00862 Transcriptional regulatory protein, C terminal C380_03250 SM00387 Histidine kinase-like ATPases C380_03250 SM00388 His Kinase A (phosphoacceptor) domain C380_03310 SM00822 C380_03310 C380_03335 SM00878 Biotin carboxylase C-terminal domain C380_03390 SM00382 ATPases associated with a variety of cellular activities C380_03395 SM00382 ATPases associated with a variety of cellular activities C380_03430 SM00382 ATPases associated with a variety of cellular activities C380_03465 SM00062 Bacterial periplasmic substrate-binding proteins C380_03470 SM00062 Bacterial periplasmic substrate-binding proteins C380_03485 SM00382 ATPases associated with a variety of cellular activities C380_03520 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). C380_03520 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain C380_03530 SM00342 helix_turn_helix, arabinose operon control protein C380_03555 SM00155 Phospholipase D. Active site motifs. C380_03600 SM00382 ATPases associated with a variety of cellular activities C380_03615 SM00363 S4 RNA-binding domain C380_03620 SM00849 Metallo-beta-lactamase superfamily C380_03665 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). C380_03665 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain C380_03670 SM00260 Two component signalling adaptor domain C380_03680 SM00833 Cobalamin synthesis protein cobW C-terminal domain C380_03700 SM00382 ATPases associated with a variety of cellular activities C380_03700 SM01086 C-terminal, D2-small domain, of ClpB protein C380_03770 SM00842 Cell division protein FtsA C380_03775 SM00864 Tubulin/FtsZ family, GTPase domain C380_03775 SM00865 Tubulin/FtsZ family, C-terminal domain C380_03780 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). C380_03780 SM01049 C380_03780 C380_03800 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). C380_03800 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain C380_03805 SM00382 ATPases associated with a variety of cellular activities C380_03860 SM00855 Phosphoglycerate mutase family C380_03920 SM00382 ATPases associated with a variety of cellular activities C380_03925 SM00382 ATPases associated with a variety of cellular activities C380_03980 SM00893 Electron transfer flavoprotein domain C380_03985 SM00893 Electron transfer flavoprotein domain C380_04010 SM00382 ATPases associated with a variety of cellular activities C380_04020 SM00387 Histidine kinase-like ATPases C380_04020 SM00388 His Kinase A (phosphoacceptor) domain C380_04025 SM00448 cheY-homologous receiver domain C380_04025 SM00862 Transcriptional regulatory protein, C terminal C380_04050 SM00382 ATPases associated with a variety of cellular activities C380_04110 SM00883 Chaperonin 10 Kd subunit C380_04115 SM00859 Semialdehyde dehydrogenase, NAD binding domain C380_04130 SM00382 ATPases associated with a variety of cellular activities C380_04190 SM00267 diguanylate cyclase C380_04255 SM00849 Metallo-beta-lactamase superfamily C380_04265 SM01219 C380_04265 C380_04310 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. C380_04325 SM01321 C380_04325 C380_04340 SM00382 ATPases associated with a variety of cellular activities C380_04370 SM00382 ATPases associated with a variety of cellular activities C380_04480 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. C380_04535 SM00957 SecA DEAD-like domain C380_04535 SM00958 SecA preprotein cross-linking domain C380_04580 SM00382 ATPases associated with a variety of cellular activities C380_04605 SM00359 Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase C380_04625 SM01091 Transporter associated domain C380_04630 SM00382 ATPases associated with a variety of cellular activities C380_04645 SM00937 C380_04645 C380_04675 SM00382 ATPases associated with a variety of cellular activities C380_04720 SM00978 C380_04720 C380_04745 SM00834 Putative regulatory protein C380_04770 SM00448 cheY-homologous receiver domain C380_04790 SM01034 Sensors of blue-light using FAD C380_04810 SM00855 Phosphoglycerate mutase family C380_04840 SM00382 ATPases associated with a variety of cellular activities C380_04845 SM00382 ATPases associated with a variety of cellular activities C380_04875 SM01400 C380_04875 C380_04890 SM00028 Tetratricopeptide repeats C380_04895 SM00898 Formamidopyrimidine-DNA glycosylase N-terminal domain C380_04895 SM01232 C380_04895 C380_04905 SM00478 endonuclease III C380_04935 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. C380_04935 SM00954 Region found in RelA / SpoT proteins C380_04940 SM01409 C380_04940 C380_04945 SM00072 Guanylate kinase homologues. C380_04955 SM00220 Serine/Threonine protein kinases, catalytic domain C380_04960 SM00331 Sigma factor PP2C-like phosphatases C380_04960 SM00332 Serine/threonine phosphatases, family 2C, catalytic domain C380_04975 SM00729 Elongator protein 3, MiaB family, Radical SAM C380_04985 SM00091 PAS domain C380_04985 SM00267 diguanylate cyclase C380_05030 SM00988 UreE urease accessory protein, N-terminal domain C380_05060 SM00387 Histidine kinase-like ATPases C380_05060 SM00388 His Kinase A (phosphoacceptor) domain C380_05060 SM00448 cheY-homologous receiver domain C380_05065 SM00421 helix_turn_helix, Lux Regulon C380_05065 SM00448 cheY-homologous receiver domain C380_05075 SM00831 Cation transporter/ATPase, N-terminus C380_05095 SM00267 diguanylate cyclase C380_05105 SM01008 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain C380_05130 SM00382 ATPases associated with a variety of cellular activities C380_05135 SM00382 ATPases associated with a variety of cellular activities C380_05140 SM00014 Acid phosphatase homologues C380_05145 SM00046 Diacylglycerol kinase catalytic domain (presumed) C380_05155 SM00044 Adenylyl- / guanylyl cyclase, catalytic domain C380_05205 SM00382 ATPases associated with a variety of cellular activities C380_05285 SM01007 Class II Aldolase and Adducin N-terminal domain C380_05305 SM00345 helix_turn_helix gluconate operon transcriptional repressor C380_05305 SM00895 C380_05305 C380_05330 SM00382 ATPases associated with a variety of cellular activities C380_05340 SM00919 Malic enzyme, NAD binding domain C380_05340 SM01274 C380_05340 C380_05350 SM00345 helix_turn_helix gluconate operon transcriptional repressor C380_05350 SM00895 C380_05350 C380_05380 SM00345 helix_turn_helix gluconate operon transcriptional repressor C380_05380 SM00895 C380_05380 C380_05405 SM00052 Putative diguanylate phosphodiesterase C380_05405 SM00267 diguanylate cyclase C380_05420 SM00419 helix_turn_helix, cAMP Regulatory protein C380_05425 SM00091 PAS domain C380_05425 SM00267 diguanylate cyclase C380_05430 SM01008 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain C380_05435 SM01092 CO dehydrogenase flavoprotein C-terminal domain C380_05445 SM00382 ATPases associated with a variety of cellular activities C380_05505 SM00267 diguanylate cyclase C380_05525 SM00100 Cyclic nucleotide-monophosphate binding domain C380_05565 SM00463 Small MutS-related domain C380_05585 SM00116 Domain in cystathionine beta-synthase and other proteins. C380_05600 SM00422 helix_turn_helix, mercury resistance C380_05635 SM00448 cheY-homologous receiver domain C380_05635 SM00862 Transcriptional regulatory protein, C terminal C380_05640 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain C380_05640 SM00387 Histidine kinase-like ATPases C380_05640 SM00388 His Kinase A (phosphoacceptor) domain C380_05665 SM00422 helix_turn_helix, mercury resistance C380_05705 SM00100 Cyclic nucleotide-monophosphate binding domain C380_05750 SM00422 helix_turn_helix, mercury resistance C380_05760 SM00014 Acid phosphatase homologues C380_05820 SM00938 Nitrogen regulatory protein P-II C380_05840 SM00448 cheY-homologous receiver domain C380_05840 SM00862 Transcriptional regulatory protein, C terminal C380_05845 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain C380_05845 SM00387 Histidine kinase-like ATPases C380_05845 SM00388 His Kinase A (phosphoacceptor) domain C380_05855 SM00849 Metallo-beta-lactamase superfamily C380_05860 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor C380_05860 SM00450 Rhodanese Homology Domain C380_05965 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. C380_06000 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain C380_06030 SM01400 C380_06030 C380_06035 SM00941 Pyrimidine nucleoside phosphorylase C-terminal domain C380_06040 SM00849 Metallo-beta-lactamase superfamily C380_06040 SM01027 Beta-Casp domain C380_06095 SM00422 helix_turn_helix, mercury resistance C380_06135 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain C380_06135 SM00387 Histidine kinase-like ATPases C380_06135 SM00388 His Kinase A (phosphoacceptor) domain C380_06140 SM00448 cheY-homologous receiver domain C380_06140 SM00862 Transcriptional regulatory protein, C terminal C380_06220 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain C380_06220 SM00387 Histidine kinase-like ATPases C380_06220 SM00388 His Kinase A (phosphoacceptor) domain C380_06225 SM00448 cheY-homologous receiver domain C380_06225 SM00862 Transcriptional regulatory protein, C terminal C380_06365 SM00493 C380_06365 C380_06390 SM00450 Rhodanese Homology Domain C380_06395 SM00091 PAS domain C380_06395 SM01080 C380_06395 C380_06400 SM00257 Lysin motif C380_06405 SM00448 cheY-homologous receiver domain C380_06405 SM00862 Transcriptional regulatory protein, C terminal C380_06430 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). C380_06440 SM00481 DNA polymerase alpha chain like domain C380_06445 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). C380_06445 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain C380_06465 SM00382 ATPases associated with a variety of cellular activities C380_06475 SM00382 ATPases associated with a variety of cellular activities C380_06480 SM00327 von Willebrand factor (vWF) type A domain C380_06505 SM00986 Uracil DNA glycosylase superfamily C380_06505 SM00987 UreE urease accessory protein, C-terminal domain C380_06515 SM00382 ATPases associated with a variety of cellular activities C380_06560 SM00052 Putative diguanylate phosphodiesterase C380_06560 SM00267 diguanylate cyclase C380_06570 SM00829 Enoylreductase C380_06615 SM00904 Riboflavin kinase C380_06620 SM00507 HNH nucleases C380_06685 SM00100 Cyclic nucleotide-monophosphate binding domain C380_06685 SM00419 helix_turn_helix, cAMP Regulatory protein C380_06690 SM00382 ATPases associated with a variety of cellular activities C380_06690 SM00843 C380_06690 C380_06700 SM00382 ATPases associated with a variety of cellular activities C380_06705 SM00421 helix_turn_helix, Lux Regulon C380_06705 SM00448 cheY-homologous receiver domain C380_06710 SM00387 Histidine kinase-like ATPases C380_06730 SM00382 ATPases associated with a variety of cellular activities C380_06735 SM00382 ATPases associated with a variety of cellular activities C380_06810 SM00479 C380_06810 C380_06815 SM00487 DEAD-like helicases superfamily C380_06815 SM00490 helicase superfamily c-terminal domain C380_06820 SM00267 diguanylate cyclase C380_06840 SM01240 C380_06840 C380_06880 SM00279 Helix-hairpin-helix class 2 (Pol1 family) motifs C380_06880 SM00474 3'-5' exonuclease C380_06880 SM00475 5'-3' exonuclease C380_06880 SM00482 DNA polymerase A domain C380_06910 SM00062 Bacterial periplasmic substrate-binding proteins C380_06920 SM00062 Bacterial periplasmic substrate-binding proteins C380_06930 SM00091 PAS domain C380_06930 SM00267 diguanylate cyclase C380_06945 SM00382 ATPases associated with a variety of cellular activities C380_06950 SM00448 cheY-homologous receiver domain C380_06950 SM00850 LytTr DNA-binding domain C380_06975 SM00267 diguanylate cyclase C380_06975 SM01079 C380_06975 C380_06985 SM01060 C380_06985 C380_06990 SM01359 C380_06990 C380_06990 SM01360 C380_06990 C380_07010 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) C380_07010 SM00091 PAS domain C380_07010 SM00267 diguanylate cyclase C380_07065 SM00248 ankyrin repeats C380_07085 SM00062 Bacterial periplasmic substrate-binding proteins C380_07115 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) C380_07115 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). C380_07130 SM00702 Prolyl 4-hydroxylase alpha subunit homologues. C380_07140 SM00316 Ribosomal protein S1-like RNA-binding domain C380_07145 SM00363 S4 RNA-binding domain C380_07195 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. C380_07200 SM00822 C380_07200 C380_07205 SM00823 Phosphopantetheine attachment site C380_07210 SM00825 Beta-ketoacyl synthase C380_07235 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. C380_07240 SM00838 Elongation factor G C-terminus C380_07255 SM00358 Double-stranded RNA binding motif C380_07255 SM00535 Ribonuclease III family C380_07290 SM00267 diguanylate cyclase C380_07290 SM00448 cheY-homologous receiver domain C380_07390 SM00984 UDP binding domain C380_07405 SM00464 Found in ATP-dependent protease La (LON) C380_07445 SM00859 Semialdehyde dehydrogenase, NAD binding domain C380_07450 SM01329 C380_07450 C380_07475 SM00849 Metallo-beta-lactamase superfamily C380_07475 SM01027 Beta-Casp domain C380_07480 SM00271 DnaJ molecular chaperone homology domain C380_07515 SM00382 ATPases associated with a variety of cellular activities C380_07525 SM00670 Large family of predicted nucleotide-binding domains C380_07570 SM00852 Probable molybdopterin binding domain C380_07580 SM01130 C380_07580 C380_07610 SM01387 C380_07610 C380_07615 SM00316 Ribosomal protein S1-like RNA-binding domain C380_07615 SM00322 K homology RNA-binding domain C380_07620 SM00829 Enoylreductase C380_07660 SM00928 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region C380_07665 SM00929 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region C380_07715 SM00382 ATPases associated with a variety of cellular activities C380_07720 SM00382 ATPases associated with a variety of cellular activities C380_07725 SM00382 ATPases associated with a variety of cellular activities C380_07775 SM00382 ATPases associated with a variety of cellular activities C380_07810 SM00839 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase C380_07825 SM00853 MutL C terminal dimerisation domain C380_07825 SM01340 C380_07825 C380_07840 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). C380_07840 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain C380_07850 SM00646 C380_07850 C380_07895 SM00052 Putative diguanylate phosphodiesterase C380_07900 SM00052 Putative diguanylate phosphodiesterase C380_07935 SM01192 C380_07935 C380_07935 SM01193 C380_07935 C380_07980 SM00558 A domain family that is part of the cupin metalloenzyme superfamily. C380_07995 SM00849 Metallo-beta-lactamase superfamily C380_08005 SM01130 C380_08005 C380_08020 SM00387 Histidine kinase-like ATPases C380_08020 SM00433 TopoisomeraseII C380_08030 SM00434 DNA Topoisomerase IV C380_08035 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). C380_08035 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain C380_08055 SM00849 Metallo-beta-lactamase superfamily C380_08250 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). C380_08250 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain C380_08265 SM00400 zinc finger C380_08265 SM00493 C380_08265 C380_08275 SM00267 diguanylate cyclase C380_08275 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain C380_08285 SM00342 helix_turn_helix, arabinose operon control protein C380_08310 SM00829 Enoylreductase C380_08330 SM00267 diguanylate cyclase C380_08335 SM00829 Enoylreductase C380_08350 SM00257 Lysin motif C380_08355 SM00363 S4 RNA-binding domain C380_08365 SM00363 S4 RNA-binding domain C380_08370 SM00562 C380_08370 C380_08380 SM00028 Tetratricopeptide repeats C380_08405 SM00564 beta-propeller repeat C380_08430 SM00244 prohibitin homologues C380_08435 SM00244 prohibitin homologues C380_08450 SM00788 Adenylosuccinate synthetase C380_08490 SM00852 Probable molybdopterin binding domain C380_08495 SM01230 C380_08495 C380_08505 SM00387 Histidine kinase-like ATPases C380_08505 SM00388 His Kinase A (phosphoacceptor) domain C380_08510 SM00382 ATPases associated with a variety of cellular activities C380_08510 SM00448 cheY-homologous receiver domain C380_08570 SM00271 DnaJ molecular chaperone homology domain C380_08685 SM00507 HNH nucleases C380_08855 SM00487 DEAD-like helicases superfamily C380_08855 SM00843 C380_08855 C380_08935 SM00382 ATPases associated with a variety of cellular activities C380_08940 SM00822 C380_08940 C380_08950 SM00342 helix_turn_helix, arabinose operon control protein C380_09015 SM00116 Domain in cystathionine beta-synthase and other proteins. C380_09020 SM00052 Putative diguanylate phosphodiesterase C380_09020 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. C380_09020 SM00091 PAS domain C380_09020 SM00267 diguanylate cyclase C380_09070 SM00316 Ribosomal protein S1-like RNA-binding domain C380_09070 SM00357 Cold shock protein domain C380_09070 SM00955 C380_09070 C380_09080 SM00342 helix_turn_helix, arabinose operon control protein C380_09145 SM00935 Outer membrane protein (OmpH-like) C380_09180 SM01097 Carbamoyl-phosphate synthase small chain, CPSase domain C380_09185 SM00851 MGS-like domain C380_09185 SM01096 Carbamoyl-phosphate synthetase large chain, oligomerisation domain C380_09205 SM01103 C380_09205 C380_09215 SM00382 ATPases associated with a variety of cellular activities C380_09230 SM00052 Putative diguanylate phosphodiesterase C380_09230 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) C380_09230 SM00091 PAS domain C380_09230 SM00267 diguanylate cyclase C380_09235 SM00052 Putative diguanylate phosphodiesterase C380_09235 SM00091 PAS domain C380_09235 SM00267 diguanylate cyclase C380_09235 SM01079 C380_09235 C380_09260 SM00855 Phosphoglycerate mutase family C380_09290 SM00382 ATPases associated with a variety of cellular activities C380_09300 SM00448 cheY-homologous receiver domain C380_09300 SM00862 Transcriptional regulatory protein, C terminal C380_09305 SM00091 PAS domain C380_09305 SM00387 Histidine kinase-like ATPases C380_09305 SM00388 His Kinase A (phosphoacceptor) domain C380_09325 SM00357 Cold shock protein domain C380_09325 SM00382 ATPases associated with a variety of cellular activities C380_09325 SM00959 Rho termination factor, N-terminal domain C380_09350 SM00382 ATPases associated with a variety of cellular activities C380_09360 SM00493 C380_09360 C380_09385 SM00849 Metallo-beta-lactamase superfamily C380_09415 SM00852 Probable molybdopterin binding domain C380_09430 SM00729 Elongator protein 3, MiaB family, Radical SAM C380_09435 SM01034 Sensors of blue-light using FAD C380_09470 SM00100 Cyclic nucleotide-monophosphate binding domain C380_09470 SM00419 helix_turn_helix, cAMP Regulatory protein C380_09550 SM00448 cheY-homologous receiver domain C380_09550 SM00862 Transcriptional regulatory protein, C terminal C380_09555 SM00387 Histidine kinase-like ATPases C380_09590 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). C380_09590 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain C380_09600 SM00260 Two component signalling adaptor domain C380_09605 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). C380_09605 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain C380_09610 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). C380_09610 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain C380_09615 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). C380_09615 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain C380_09630 SM00938 Nitrogen regulatory protein P-II C380_09685 SM00917 LeuA allosteric (dimerisation) domain C380_09695 SM00346 helix_turn_helix isocitrate lyase regulation C380_09965 SM00857 Resolvase, N terminal domain C380_09975 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. C380_09985 SM01211 C380_09985 C380_10040 SM00831 Cation transporter/ATPase, N-terminus C380_10075 SM00240 Forkhead associated domain C380_10110 SM00100 Cyclic nucleotide-monophosphate binding domain C380_10110 SM00419 helix_turn_helix, cAMP Regulatory protein C380_10220 SM00062 Bacterial periplasmic substrate-binding proteins C380_10240 SM00382 ATPases associated with a variety of cellular activities C380_10290 SM00382 ATPases associated with a variety of cellular activities C380_10340 SM00829 Enoylreductase C380_10370 SM00387 Histidine kinase-like ATPases C380_10370 SM00388 His Kinase A (phosphoacceptor) domain C380_10375 SM00448 cheY-homologous receiver domain C380_10375 SM00862 Transcriptional regulatory protein, C terminal C380_10390 SM00491 C380_10390 C380_10435 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain C380_10450 SM01130 C380_10450 C380_10470 SM00382 ATPases associated with a variety of cellular activities C380_10480 SM00382 ATPases associated with a variety of cellular activities C380_10575 SM00382 ATPases associated with a variety of cellular activities C380_10575 SM00930 C380_10575 C380_10600 SM01329 C380_10600 C380_10620 SM00422 helix_turn_helix, mercury resistance C380_10625 SM00829 Enoylreductase C380_10635 SM00316 Ribosomal protein S1-like RNA-binding domain C380_10635 SM00732 Likely ribonuclease with RNase H fold. C380_10650 SM00052 Putative diguanylate phosphodiesterase C380_10650 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) C380_10650 SM00091 PAS domain C380_10650 SM00267 diguanylate cyclase C380_10650 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain C380_10705 SM00248 ankyrin repeats C380_10710 SM00382 ATPases associated with a variety of cellular activities C380_10895 SM00507 HNH nucleases C380_10905 SM00861 Transketolase, pyrimidine binding domain C380_10930 SM00331 Sigma factor PP2C-like phosphatases C380_10930 SM00332 Serine/threonine phosphatases, family 2C, catalytic domain C380_10940 SM00487 DEAD-like helicases superfamily C380_10940 SM00491 C380_10940 C380_10950 SM00481 DNA polymerase alpha chain like domain C380_10960 SM00382 ATPases associated with a variety of cellular activities C380_10960 SM01086 C-terminal, D2-small domain, of ClpB protein C380_10995 SM00382 ATPases associated with a variety of cellular activities C380_11005 SM00345 helix_turn_helix gluconate operon transcriptional repressor C380_11010 SM00345 helix_turn_helix gluconate operon transcriptional repressor C380_11010 SM00895 C380_11010 C380_11050 SM01130 C380_11050 C380_11055 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain C380_11060 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. C380_11065 SM00267 diguanylate cyclase C380_11115 SM00450 Rhodanese Homology Domain C380_11125 SM00267 diguanylate cyclase C380_11135 SM00749 bacterial OsmY and nodulation domain C380_11155 SM00382 ATPases associated with a variety of cellular activities C380_11160 SM00967 RNA 2'-O ribose methyltransferase substrate binding C380_11210 SM00530 Helix-turn-helix XRE-family like proteins C380_11265 SM00347 helix_turn_helix multiple antibiotic resistance protein C380_11270 SM00729 Elongator protein 3, MiaB family, Radical SAM C380_11280 SM00357 Cold shock protein domain C380_11305 SM00487 DEAD-like helicases superfamily C380_11305 SM00490 helicase superfamily c-terminal domain C380_11330 SM00271 DnaJ molecular chaperone homology domain C380_11345 SM00479 C380_11345 C380_11400 SM00421 helix_turn_helix, Lux Regulon C380_11400 SM00448 cheY-homologous receiver domain C380_11405 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) C380_11405 SM00091 PAS domain C380_11405 SM00387 Histidine kinase-like ATPases C380_11405 SM00388 His Kinase A (phosphoacceptor) domain C380_11450 SM00062 Bacterial periplasmic substrate-binding proteins C380_11455 SM00382 ATPases associated with a variety of cellular activities C380_11470 SM00354 helix_turn _helix lactose operon repressor C380_11485 SM00420 helix_turn_helix, Deoxyribose operon repressor C380_11485 SM01134 C380_11485 C380_11500 SM00342 helix_turn_helix, arabinose operon control protein C380_11515 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) C380_11515 SM00091 PAS domain C380_11515 SM00267 diguanylate cyclase C380_11540 SM00342 helix_turn_helix, arabinose operon control protein C380_11545 SM00487 DEAD-like helicases superfamily C380_11545 SM00490 helicase superfamily c-terminal domain C380_11550 SM00421 helix_turn_helix, Lux Regulon C380_11580 SM00044 Adenylyl- / guanylyl cyclase, catalytic domain C380_11600 SM00941 Pyrimidine nucleoside phosphorylase C-terminal domain C380_11605 SM01400 C380_11605 C380_11655 SM00052 Putative diguanylate phosphodiesterase C380_11655 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) C380_11655 SM00091 PAS domain C380_11655 SM00267 diguanylate cyclase C380_11670 SM00342 helix_turn_helix, arabinose operon control protein C380_11670 SM00478 endonuclease III C380_11670 SM01009 AlkA N-terminal domain C380_11695 SM00450 Rhodanese Homology Domain C380_11735 SM00345 helix_turn_helix gluconate operon transcriptional repressor C380_11735 SM00866 C380_11735 C380_11755 SM00382 ATPases associated with a variety of cellular activities C380_11760 SM00382 ATPases associated with a variety of cellular activities C380_11815 SM00382 ATPases associated with a variety of cellular activities C380_11845 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) C380_11845 SM00091 PAS domain C380_11845 SM00267 diguanylate cyclase C380_11850 SM00382 ATPases associated with a variety of cellular activities C380_11875 SM00448 cheY-homologous receiver domain C380_11875 SM00862 Transcriptional regulatory protein, C terminal C380_11880 SM00387 Histidine kinase-like ATPases C380_11880 SM00388 His Kinase A (phosphoacceptor) domain C380_11885 SM00382 ATPases associated with a variety of cellular activities C380_11920 SM01008 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain C380_11975 SM00347 helix_turn_helix multiple antibiotic resistance protein C380_11995 SM00822 C380_11995 C380_12020 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor C380_12025 SM00849 Metallo-beta-lactamase superfamily C380_12030 SM00450 Rhodanese Homology Domain C380_12050 SM00073 Histidine Phosphotransfer domain C380_12050 SM00387 Histidine kinase-like ATPases C380_12050 SM00388 His Kinase A (phosphoacceptor) domain C380_12050 SM00448 cheY-homologous receiver domain C380_12055 SM00448 cheY-homologous receiver domain C380_12055 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. C380_12060 SM00729 Elongator protein 3, MiaB family, Radical SAM C380_12060 SM00876 Biotin and Thiamin Synthesis associated domain C380_12080 SM00878 Biotin carboxylase C-terminal domain C380_12100 SM00345 helix_turn_helix gluconate operon transcriptional repressor C380_12100 SM00895 C380_12100 C380_12115 SM00344 helix_turn_helix ASNC type C380_12120 SM00563 Phosphate acyltransferases C380_12150 SM00507 HNH nucleases C380_12180 SM00400 zinc finger C380_12210 SM00052 Putative diguanylate phosphodiesterase C380_12210 SM00267 diguanylate cyclase C380_12210 SM01079 C380_12210 C380_12215 SM00954 Region found in RelA / SpoT proteins C380_12230 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). C380_12230 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain C380_12260 SM00382 ATPases associated with a variety of cellular activities C380_12265 SM00822 C380_12265 C380_12270 SM00052 Putative diguanylate phosphodiesterase C380_12310 SM00347 helix_turn_helix multiple antibiotic resistance protein C380_12335 SM00278 Helix-hairpin-helix DNA-binding motif class 1 C380_12335 SM00292 breast cancer carboxy-terminal domain C380_12335 SM00532 Ligase N family C380_12340 SM00771 ZipA, C-terminal domain (FtsZ-binding) C380_12345 SM00968 SMC proteins Flexible Hinge Domain C380_12350 SM00267 diguanylate cyclase C380_12355 SM00052 Putative diguanylate phosphodiesterase C380_12355 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) C380_12355 SM00091 PAS domain C380_12355 SM00267 diguanylate cyclase C380_12355 SM01079 C380_12355 C380_12360 SM00530 Helix-turn-helix XRE-family like proteins C380_12390 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. C380_12390 SM00091 PAS domain C380_12390 SM00267 diguanylate cyclase C380_12405 SM00382 ATPases associated with a variety of cellular activities C380_12415 SM00671 Sel1-like repeats. C380_12440 SM01130 C380_12440 C380_12485 SM00347 helix_turn_helix multiple antibiotic resistance protein C380_12510 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) C380_12510 SM00091 PAS domain C380_12510 SM00387 Histidine kinase-like ATPases C380_12510 SM00388 His Kinase A (phosphoacceptor) domain C380_12535 SM00347 helix_turn_helix multiple antibiotic resistance protein C380_12595 SM00052 Putative diguanylate phosphodiesterase C380_12595 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. C380_12595 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) C380_12595 SM00091 PAS domain C380_12595 SM00267 diguanylate cyclase C380_12595 SM00448 cheY-homologous receiver domain C380_12600 SM00448 cheY-homologous receiver domain C380_12605 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) C380_12605 SM00091 PAS domain C380_12605 SM00387 Histidine kinase-like ATPases C380_12605 SM00388 His Kinase A (phosphoacceptor) domain C380_12610 SM01329 C380_12610 C380_12675 SM00870 C380_12675 C380_12765 SM00387 Histidine kinase-like ATPases C380_12765 SM00388 His Kinase A (phosphoacceptor) domain C380_12770 SM00448 cheY-homologous receiver domain C380_12770 SM00862 Transcriptional regulatory protein, C terminal C380_12785 SM00316 Ribosomal protein S1-like RNA-binding domain C380_12810 SM01209 C380_12810 C380_12810 SM01210 C380_12810 C380_12820 SM00382 ATPases associated with a variety of cellular activities C380_12870 SM00382 ATPases associated with a variety of cellular activities C380_12910 SM00382 ATPases associated with a variety of cellular activities C380_12925 SM00267 diguanylate cyclase C380_12945 SM00271 DnaJ molecular chaperone homology domain C380_12960 SM00100 Cyclic nucleotide-monophosphate binding domain C380_12960 SM00220 Serine/Threonine protein kinases, catalytic domain C380_12985 SM00481 DNA polymerase alpha chain like domain C380_13010 SM00882 Coenzyme A transferase C380_13015 SM00882 Coenzyme A transferase C380_13020 SM00091 PAS domain C380_13020 SM00421 helix_turn_helix, Lux Regulon C380_13085 SM00346 helix_turn_helix isocitrate lyase regulation C380_13100 SM00052 Putative diguanylate phosphodiesterase C380_13100 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) C380_13100 SM00091 PAS domain C380_13100 SM00267 diguanylate cyclase C380_13120 SM00822 C380_13120 C380_13130 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). C380_13130 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain C380_13160 SM00382 ATPases associated with a variety of cellular activities C380_13160 SM00487 DEAD-like helicases superfamily C380_13160 SM00490 helicase superfamily c-terminal domain C380_13160 SM00847 Helicase associated domain (HA2) Add an annotation C380_13175 SM00382 ATPases associated with a variety of cellular activities C380_13195 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. C380_13195 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. C380_13200 SM00450 Rhodanese Homology Domain C380_13220 SM00382 ATPases associated with a variety of cellular activities C380_13255 SM00248 ankyrin repeats C380_13275 SM00052 Putative diguanylate phosphodiesterase C380_13275 SM00267 diguanylate cyclase C380_13310 SM00267 diguanylate cyclase C380_13340 SM00829 Enoylreductase C380_13380 SM00382 ATPases associated with a variety of cellular activities C380_13385 SM00382 ATPases associated with a variety of cellular activities C380_13410 SM00419 helix_turn_helix, cAMP Regulatory protein C380_13420 SM00342 helix_turn_helix, arabinose operon control protein C380_13460 SM00116 Domain in cystathionine beta-synthase and other proteins. C380_13480 SM00382 ATPases associated with a variety of cellular activities C380_13485 SM00382 ATPases associated with a variety of cellular activities C380_13535 SM00345 helix_turn_helix gluconate operon transcriptional repressor C380_13535 SM00866 C380_13535 C380_13540 SM00382 ATPases associated with a variety of cellular activities C380_13550 SM00062 Bacterial periplasmic substrate-binding proteins C380_13555 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain C380_13555 SM00387 Histidine kinase-like ATPases C380_13555 SM00388 His Kinase A (phosphoacceptor) domain C380_13560 SM00448 cheY-homologous receiver domain C380_13560 SM00862 Transcriptional regulatory protein, C terminal C380_13590 SM00434 DNA Topoisomerase IV C380_13600 SM00830 Chorismate mutase type II C380_13615 SM00316 Ribosomal protein S1-like RNA-binding domain C380_13620 SM00411 bacterial (prokaryotic) histone like domain C380_13630 SM00028 Tetratricopeptide repeats C380_13755 SM00052 Putative diguanylate phosphodiesterase C380_13755 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) C380_13755 SM00091 PAS domain C380_13755 SM00267 diguanylate cyclase C380_13825 SM01207 C380_13825 C380_13900 SM00487 DEAD-like helicases superfamily C380_13900 SM00490 helicase superfamily c-terminal domain C380_13925 SM00487 DEAD-like helicases superfamily C380_13925 SM00490 helicase superfamily c-terminal domain C380_13955 SM00487 DEAD-like helicases superfamily C380_13955 SM00490 helicase superfamily c-terminal domain C380_14045 SM00487 DEAD-like helicases superfamily C380_14100 SM00382 ATPases associated with a variety of cellular activities C380_14120 SM00990 C380_14120 C380_14180 SM00422 helix_turn_helix, mercury resistance C380_14185 SM00411 bacterial (prokaryotic) histone like domain C380_14190 SM00873 B3/4 domain C380_14190 SM00874 tRNA synthetase B5 domain C380_14190 SM00896 Ferredoxin-fold anticodon binding domain C380_14215 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain C380_14240 SM00151 SWI complex, BAF60b domains C380_14250 SM00702 Prolyl 4-hydroxylase alpha subunit homologues. C380_14310 SM00344 helix_turn_helix ASNC type C380_14390 SM00382 ATPases associated with a variety of cellular activities C380_14430 SM00893 Electron transfer flavoprotein domain C380_14435 SM00893 Electron transfer flavoprotein domain C380_14455 SM00849 Metallo-beta-lactamase superfamily C380_14460 SM00342 helix_turn_helix, arabinose operon control protein C380_14545 SM00530 Helix-turn-helix XRE-family like proteins C380_14565 SM00470 ParB-like nuclease domain C380_14605 SM00507 HNH nucleases C380_14620 SM00487 DEAD-like helicases superfamily C380_14620 SM00490 helicase superfamily c-terminal domain C380_14665 SM00116 Domain in cystathionine beta-synthase and other proteins. C380_14665 SM01240 C380_14665 C380_14735 SM00316 Ribosomal protein S1-like RNA-binding domain C380_14735 SM00322 K homology RNA-binding domain C380_14745 SM00487 DEAD-like helicases superfamily C380_14745 SM00490 helicase superfamily c-terminal domain C380_14765 SM00345 helix_turn_helix gluconate operon transcriptional repressor C380_14800 SM00849 Metallo-beta-lactamase superfamily C380_14865 SM00382 ATPases associated with a variety of cellular activities C380_14895 SM00554 Four repeated domains in the Fasciclin I family of proteins, present in many other contexts. C380_14910 SM00244 prohibitin homologues C380_14925 SM00857 Resolvase, N terminal domain C380_14955 SM00422 helix_turn_helix, mercury resistance C380_14975 SM00052 Putative diguanylate phosphodiesterase C380_14975 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) C380_14975 SM00091 PAS domain C380_14975 SM00267 diguanylate cyclase C380_14975 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain C380_15030 SM00458 Ricin-type beta-trefoil C380_15050 SM00382 ATPases associated with a variety of cellular activities C380_15055 SM00487 DEAD-like helicases superfamily C380_15055 SM00490 helicase superfamily c-terminal domain C380_15070 SM00631 C380_15070 C380_15090 SM00411 bacterial (prokaryotic) histone like domain C380_15095 SM01329 C380_15095 C380_15105 SM00278 Helix-hairpin-helix DNA-binding motif class 1 C380_15105 SM00465 GIY-YIG type nucleases (URI domain) C380_15155 SM00841 Elongation factor P, C-terminal C380_15155 SM01185 C380_15155 C380_15160 SM00729 Elongator protein 3, MiaB family, Radical SAM C380_15170 SM00954 Region found in RelA / SpoT proteins C380_15180 SM00822 C380_15180 C380_15190 SM00448 cheY-homologous receiver domain C380_15190 SM00862 Transcriptional regulatory protein, C terminal C380_15195 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain C380_15195 SM00387 Histidine kinase-like ATPases C380_15195 SM00388 His Kinase A (phosphoacceptor) domain C380_15200 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain C380_15210 SM01130 C380_15210 C380_15215 SM00354 helix_turn _helix lactose operon repressor C380_15230 SM00487 DEAD-like helicases superfamily C380_15230 SM00490 helicase superfamily c-terminal domain C380_15230 SM00982 C380_15230 C380_15230 SM01058 CarD-like/TRCF domain C380_15295 SM00487 DEAD-like helicases superfamily C380_15295 SM00490 helicase superfamily c-terminal domain C380_15305 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) C380_15305 SM00091 PAS domain C380_15305 SM00267 diguanylate cyclase C380_15315 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). C380_15315 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain C380_15325 SM00880 C380_15325 C380_15325 SM01118 C380_15325 C380_15355 SM00871 Bacterial transcription activator, effector binding domain C380_15385 SM00478 endonuclease III C380_15385 SM00525 C380_15385 C380_15395 SM00966 SpoVT / AbrB like domain C380_15405 SM00345 helix_turn_helix gluconate operon transcriptional repressor C380_15405 SM00895 C380_15405 C380_15425 SM00382 ATPases associated with a variety of cellular activities C380_15430 SM00267 diguanylate cyclase C380_15475 SM00382 ATPases associated with a variety of cellular activities C380_15520 SM00052 Putative diguanylate phosphodiesterase C380_15520 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) C380_15520 SM00091 PAS domain C380_15520 SM00267 diguanylate cyclase C380_15535 SM00729 Elongator protein 3, MiaB family, Radical SAM C380_15540 SM00100 Cyclic nucleotide-monophosphate binding domain C380_15540 SM00419 helix_turn_helix, cAMP Regulatory protein C380_15615 SM00345 helix_turn_helix gluconate operon transcriptional repressor C380_15615 SM00895 C380_15615 C380_15680 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain C380_15680 SM00387 Histidine kinase-like ATPases C380_15680 SM00388 His Kinase A (phosphoacceptor) domain C380_15685 SM00448 cheY-homologous receiver domain C380_15685 SM00862 Transcriptional regulatory protein, C terminal C380_15795 SM00470 ParB-like nuclease domain C380_15825 SM00226 Low molecular weight phosphatase family C380_15835 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor C380_15845 SM00530 Helix-turn-helix XRE-family like proteins C380_15895 SM00345 helix_turn_helix gluconate operon transcriptional repressor C380_15895 SM00895 C380_15895 C380_15910 SM00859 Semialdehyde dehydrogenase, NAD binding domain C380_16000 SM00382 ATPases associated with a variety of cellular activities C380_16060 SM00382 ATPases associated with a variety of cellular activities C380_16060 SM00464 Found in ATP-dependent protease La (LON) C380_16065 SM00382 ATPases associated with a variety of cellular activities C380_16065 SM00994 ClpX C4-type zinc finger C380_16065 SM01086 C-terminal, D2-small domain, of ClpB protein C380_16125 SM00448 cheY-homologous receiver domain C380_16125 SM00862 Transcriptional regulatory protein, C terminal C380_16130 SM00387 Histidine kinase-like ATPases C380_16130 SM00388 His Kinase A (phosphoacceptor) domain C380_16160 SM00354 helix_turn _helix lactose operon repressor C380_16180 SM00382 ATPases associated with a variety of cellular activities C380_16185 SM00062 Bacterial periplasmic substrate-binding proteins C380_16210 SM00382 ATPases associated with a variety of cellular activities C380_16215 SM00382 ATPases associated with a variety of cellular activities C380_16250 SM01092 CO dehydrogenase flavoprotein C-terminal domain C380_16255 SM01008 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain C380_16260 SM00342 helix_turn_helix, arabinose operon control protein C380_16275 SM00342 helix_turn_helix, arabinose operon control protein C380_16390 SM00382 ATPases associated with a variety of cellular activities C380_16395 SM00382 ATPases associated with a variety of cellular activities C380_16400 SM00060 Fibronectin type 3 domain C380_16410 SM00091 PAS domain C380_16410 SM00382 ATPases associated with a variety of cellular activities C380_16435 SM00448 cheY-homologous receiver domain C380_16435 SM00862 Transcriptional regulatory protein, C terminal C380_16440 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain C380_16440 SM00387 Histidine kinase-like ATPases C380_16440 SM00388 His Kinase A (phosphoacceptor) domain C380_16445 SM00363 S4 RNA-binding domain C380_16455 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). C380_16455 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain C380_16465 SM00478 endonuclease III C380_16470 SM00840 C380_16470 C380_16475 SM00028 Tetratricopeptide repeats C380_16515 SM00344 helix_turn_helix ASNC type C380_16525 SM00344 helix_turn_helix ASNC type C380_16595 SM00240 Forkhead associated domain C380_16615 SM00062 Bacterial periplasmic substrate-binding proteins C380_16625 SM00155 Phospholipase D. Active site motifs. C380_16665 SM00318 Staphylococcal nuclease homologues C380_16710 SM00448 cheY-homologous receiver domain C380_16710 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. C380_16720 SM00091 PAS domain C380_16720 SM00387 Histidine kinase-like ATPases C380_16720 SM00388 His Kinase A (phosphoacceptor) domain C380_16720 SM00448 cheY-homologous receiver domain C380_16755 SM00052 Putative diguanylate phosphodiesterase C380_16755 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) C380_16755 SM00091 PAS domain C380_16755 SM00267 diguanylate cyclase C380_16780 SM00822 C380_16780 C380_16870 SM00387 Histidine kinase-like ATPases C380_16875 SM00448 cheY-homologous receiver domain C380_16885 SM00248 ankyrin repeats C380_16915 SM00345 helix_turn_helix gluconate operon transcriptional repressor C380_16915 SM00866 C380_16915 C380_16960 SM00342 helix_turn_helix, arabinose operon control protein C380_16975 SM00829 Enoylreductase C380_16990 SM00829 Enoylreductase C380_17020 SM00530 Helix-turn-helix XRE-family like proteins C380_17025 SM00530 Helix-turn-helix XRE-family like proteins C380_17030 SM00345 helix_turn_helix gluconate operon transcriptional repressor C380_17030 SM00895 C380_17030 C380_17040 SM01008 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain C380_17055 SM01092 CO dehydrogenase flavoprotein C-terminal domain C380_17085 SM00382 ATPases associated with a variety of cellular activities C380_17090 SM00382 ATPases associated with a variety of cellular activities C380_17155 SM00155 Phospholipase D. Active site motifs. C380_17185 SM00421 helix_turn_helix, Lux Regulon C380_17185 SM00448 cheY-homologous receiver domain C380_17190 SM00387 Histidine kinase-like ATPases C380_17190 SM00388 His Kinase A (phosphoacceptor) domain C380_17190 SM00448 cheY-homologous receiver domain C380_17205 SM00382 ATPases associated with a variety of cellular activities C380_17205 SM01086 C-terminal, D2-small domain, of ClpB protein C380_17215 SM00382 ATPases associated with a variety of cellular activities C380_17280 SM00893 Electron transfer flavoprotein domain C380_17285 SM00893 Electron transfer flavoprotein domain C380_17305 SM00382 ATPases associated with a variety of cellular activities C380_17315 SM00460 Transglutaminase/protease-like homologues C380_17325 SM00382 ATPases associated with a variety of cellular activities C380_17350 SM00382 ATPases associated with a variety of cellular activities C380_17365 SM00342 helix_turn_helix, arabinose operon control protein C380_17385 SM00382 ATPases associated with a variety of cellular activities C380_17390 SM00382 ATPases associated with a variety of cellular activities C380_17410 SM01012 C380_17410 C380_17425 SM00382 ATPases associated with a variety of cellular activities C380_17430 SM00116 Domain in cystathionine beta-synthase and other proteins. C380_17465 SM00354 helix_turn _helix lactose operon repressor C380_17470 SM00091 PAS domain C380_17470 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). C380_17480 SM00220 Serine/Threonine protein kinases, catalytic domain C380_17480 SM00331 Sigma factor PP2C-like phosphatases C380_17480 SM00332 Serine/threonine phosphatases, family 2C, catalytic domain C380_17500 SM00926 Molybdopterin oxidoreductase Fe4S4 domain C380_17550 SM00052 Putative diguanylate phosphodiesterase C380_17550 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) C380_17550 SM00091 PAS domain C380_17550 SM00267 diguanylate cyclase C380_17550 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain C380_17570 SM01329 C380_17570 C380_17590 SM00342 helix_turn_helix, arabinose operon control protein C380_17610 SM00852 Probable molybdopterin binding domain C380_17635 SM00448 cheY-homologous receiver domain C380_17635 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. C380_17640 SM00073 Histidine Phosphotransfer domain C380_17640 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) C380_17640 SM00091 PAS domain C380_17640 SM00387 Histidine kinase-like ATPases C380_17640 SM00388 His Kinase A (phosphoacceptor) domain C380_17640 SM00448 cheY-homologous receiver domain C380_17645 SM00052 Putative diguanylate phosphodiesterase C380_17645 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) C380_17645 SM00267 diguanylate cyclase C380_17650 SM00533 DNA-binding domain of DNA mismatch repair MUTS family C380_17650 SM00534 ATPase domain of DNA mismatch repair MUTS family C380_17675 SM00267 diguanylate cyclase C380_17680 SM00267 diguanylate cyclase C380_17685 SM00267 diguanylate cyclase C380_17695 SM00091 PAS domain C380_17695 SM00267 diguanylate cyclase C380_17735 SM00387 Histidine kinase-like ATPases C380_17740 SM00448 cheY-homologous receiver domain C380_17740 SM00850 LytTr DNA-binding domain C380_17800 SM00346 helix_turn_helix isocitrate lyase regulation C380_17810 SM00849 Metallo-beta-lactamase superfamily C380_17825 SM00091 PAS domain C380_17825 SM00387 Histidine kinase-like ATPases C380_17825 SM00388 His Kinase A (phosphoacceptor) domain C380_17830 SM00062 Bacterial periplasmic substrate-binding proteins C380_17835 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. C380_17840 SM00448 cheY-homologous receiver domain C380_17845 SM00448 cheY-homologous receiver domain C380_17850 SM00448 cheY-homologous receiver domain C380_17865 SM00226 Low molecular weight phosphatase family C380_17885 SM00382 ATPases associated with a variety of cellular activities C380_17890 SM01092 CO dehydrogenase flavoprotein C-terminal domain C380_17895 SM01008 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain C380_17910 SM00422 helix_turn_helix, mercury resistance C380_17935 SM00226 Low molecular weight phosphatase family C380_17945 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor C380_17950 SM00052 Putative diguanylate phosphodiesterase C380_17990 SM00382 ATPases associated with a variety of cellular activities C380_18020 SM00861 Transketolase, pyrimidine binding domain C380_18045 SM00450 Rhodanese Homology Domain C380_18130 SM00507 HNH nucleases C380_18145 SM00530 Helix-turn-helix XRE-family like proteins C380_18180 SM00382 ATPases associated with a variety of cellular activities C380_18365 SM00867 YceI-like domain C380_18370 SM00867 YceI-like domain C380_18435 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). C380_18435 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain C380_18495 SM00260 Two component signalling adaptor domain C380_18495 SM00448 cheY-homologous receiver domain C380_18520 SM00091 PAS domain C380_18520 SM00387 Histidine kinase-like ATPases C380_18520 SM00388 His Kinase A (phosphoacceptor) domain C380_18525 SM00421 helix_turn_helix, Lux Regulon C380_18525 SM00448 cheY-homologous receiver domain C380_18585 SM00342 helix_turn_helix, arabinose operon control protein C380_18590 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. C380_18660 SM00899 C380_18660 C380_18700 SM00448 cheY-homologous receiver domain C380_18700 SM00862 Transcriptional regulatory protein, C terminal C380_18705 SM00387 Histidine kinase-like ATPases C380_18705 SM00388 His Kinase A (phosphoacceptor) domain C380_18745 SM00422 helix_turn_helix, mercury resistance C380_18760 SM00763 PrkA AAA domain C380_18770 SM00052 Putative diguanylate phosphodiesterase C380_18770 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) C380_18770 SM00091 PAS domain C380_18770 SM00267 diguanylate cyclase C380_18775 SM00052 Putative diguanylate phosphodiesterase C380_18775 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) C380_18775 SM00091 PAS domain C380_18775 SM00267 diguanylate cyclase C380_18790 SM00530 Helix-turn-helix XRE-family like proteins C380_18795 SM00528 Domain in histone-like proteins of HNS family C380_18805 SM00487 DEAD-like helicases superfamily C380_18805 SM00490 helicase superfamily c-terminal domain C380_18825 SM00360 RNA recognition motif C380_18855 SM00926 Molybdopterin oxidoreductase Fe4S4 domain C380_18885 SM00926 Molybdopterin oxidoreductase Fe4S4 domain C380_18890 SM00928 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region C380_19035 SM00460 Transglutaminase/protease-like homologues C380_19045 SM00460 Transglutaminase/protease-like homologues C380_19075 SM00749 bacterial OsmY and nodulation domain C380_19090 SM00387 Histidine kinase-like ATPases C380_19095 SM00421 helix_turn_helix, Lux Regulon C380_19095 SM00448 cheY-homologous receiver domain C380_19100 SM00448 cheY-homologous receiver domain C380_19110 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. C380_19110 SM00245 tail specific protease C380_19115 SM00855 Phosphoglycerate mutase family C380_19120 SM00450 Rhodanese Homology Domain C380_19170 SM00382 ATPases associated with a variety of cellular activities C380_19170 SM00962 SRP54-type protein, GTPase domain C380_19170 SM00963 SRP54-type protein, helical bundle domain C380_19175 SM00052 Putative diguanylate phosphodiesterase C380_19175 SM00091 PAS domain C380_19175 SM00267 diguanylate cyclase C380_19305 SM00460 Transglutaminase/protease-like homologues C380_19340 SM00882 Coenzyme A transferase C380_19345 SM00882 Coenzyme A transferase C380_19350 SM00346 helix_turn_helix isocitrate lyase regulation C380_19375 SM00382 ATPases associated with a variety of cellular activities C380_19380 SM00382 ATPases associated with a variety of cellular activities C380_19405 SM00346 helix_turn_helix isocitrate lyase regulation C380_19425 SM00382 ATPases associated with a variety of cellular activities C380_19465 SM00344 helix_turn_helix ASNC type C380_19475 SM00387 Histidine kinase-like ATPases C380_19475 SM00388 His Kinase A (phosphoacceptor) domain C380_19480 SM00448 cheY-homologous receiver domain C380_19480 SM00862 Transcriptional regulatory protein, C terminal C380_19490 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. C380_19510 SM00858 C380_19510 C380_19540 SM00345 helix_turn_helix gluconate operon transcriptional repressor C380_19540 SM00895 C380_19540 C380_19565 SM00387 Histidine kinase-like ATPases C380_19565 SM00388 His Kinase A (phosphoacceptor) domain C380_19575 SM00382 ATPases associated with a variety of cellular activities C380_19585 SM00237 Domains in Na-Ca exchangers and integrin-beta4 C380_19590 SM00237 Domains in Na-Ca exchangers and integrin-beta4 C380_19595 SM00237 Domains in Na-Ca exchangers and integrin-beta4 C380_19605 SM00100 Cyclic nucleotide-monophosphate binding domain C380_19610 SM00563 Phosphate acyltransferases C380_19630 SM00732 Likely ribonuclease with RNase H fold. C380_19650 SM00073 Histidine Phosphotransfer domain C380_19650 SM00260 Two component signalling adaptor domain C380_19650 SM00387 Histidine kinase-like ATPases C380_19650 SM00448 cheY-homologous receiver domain C380_19650 SM01231 C380_19650 C380_19655 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). C380_19660 SM00260 Two component signalling adaptor domain C380_19665 SM00448 cheY-homologous receiver domain C380_19670 SM00448 cheY-homologous receiver domain C380_19690 SM00346 helix_turn_helix isocitrate lyase regulation C380_19705 SM00798 AICARFT/IMPCHase bienzyme C380_19705 SM00851 MGS-like domain C380_19730 SM00267 diguanylate cyclase C380_19775 SM00729 Elongator protein 3, MiaB family, Radical SAM C380_19780 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain C380_19780 SM00387 Histidine kinase-like ATPases C380_19780 SM00388 His Kinase A (phosphoacceptor) domain C380_19790 SM00382 ATPases associated with a variety of cellular activities C380_19790 SM00448 cheY-homologous receiver domain C380_19805 SM00382 ATPases associated with a variety of cellular activities C380_19805 SM00962 SRP54-type protein, GTPase domain C380_19805 SM00963 SRP54-type protein, helical bundle domain C380_19820 SM00387 Histidine kinase-like ATPases C380_19820 SM00388 His Kinase A (phosphoacceptor) domain C380_19825 SM00382 ATPases associated with a variety of cellular activities C380_19825 SM00448 cheY-homologous receiver domain C380_19830 SM00644 C380_19830 C380_19865 SM00878 Biotin carboxylase C-terminal domain C380_19920 SM00220 Serine/Threonine protein kinases, catalytic domain C380_19935 SM00955 C380_19935 C380_19965 SM00563 Phosphate acyltransferases C380_20010 SM00054 EF-hand, calcium binding motif C380_20025 SM00382 ATPases associated with a variety of cellular activities C380_20035 SM01209 C380_20035 C380_20050 SM00822 C380_20050 C380_20065 SM00091 PAS domain C380_20065 SM00382 ATPases associated with a variety of cellular activities C380_20110 SM00411 bacterial (prokaryotic) histone like domain C380_20130 SM00100 Cyclic nucleotide-monophosphate binding domain C380_20130 SM00419 helix_turn_helix, cAMP Regulatory protein C380_20155 SM00530 Helix-turn-helix XRE-family like proteins C380_20220 SM00267 diguanylate cyclase C380_20235 SM00344 helix_turn_helix ASNC type C380_20240 SM00267 diguanylate cyclase C380_20245 SM00387 Histidine kinase-like ATPases C380_20245 SM00388 His Kinase A (phosphoacceptor) domain C380_20255 SM00419 helix_turn_helix, cAMP Regulatory protein C380_20260 SM01034 Sensors of blue-light using FAD C380_20265 SM00825 Beta-ketoacyl synthase C380_20290 SM00363 S4 RNA-binding domain C380_20360 SM00996 S-adenosyl-L-homocysteine hydrolase C380_20360 SM00997 S-adenosyl-L-homocysteine hydrolase, NAD binding domain C380_20395 SM00382 ATPases associated with a variety of cellular activities C380_20425 SM00344 helix_turn_helix ASNC type C380_20440 SM00382 ATPases associated with a variety of cellular activities C380_20525 SM00878 Biotin carboxylase C-terminal domain C380_20555 SM00342 helix_turn_helix, arabinose operon control protein C380_20630 SM00421 helix_turn_helix, Lux Regulon C380_20630 SM00448 cheY-homologous receiver domain C380_20635 SM00028 Tetratricopeptide repeats C380_20635 SM00388 His Kinase A (phosphoacceptor) domain C380_20670 SM00947 Carbonic anhydrase C380_20685 SM00422 helix_turn_helix, mercury resistance C380_20690 SM00849 Metallo-beta-lactamase superfamily C380_20700 SM00382 ATPases associated with a variety of cellular activities C380_20705 SM00448 cheY-homologous receiver domain C380_20715 SM00138 Methyltransferase, chemotaxis proteins C380_20720 SM00260 Two component signalling adaptor domain C380_20725 SM00073 Histidine Phosphotransfer domain C380_20725 SM00260 Two component signalling adaptor domain C380_20725 SM00387 Histidine kinase-like ATPases C380_20725 SM01231 C380_20725 C380_20730 SM00448 cheY-homologous receiver domain C380_20740 SM00387 Histidine kinase-like ATPases C380_20745 SM00421 helix_turn_helix, Lux Regulon C380_20745 SM00448 cheY-homologous receiver domain C380_20795 SM00382 ATPases associated with a variety of cellular activities C380_20865 SM00448 cheY-homologous receiver domain C380_20885 SM00382 ATPases associated with a variety of cellular activities C380_20885 SM00962 SRP54-type protein, GTPase domain C380_20910 SM00858 C380_20910 C380_20955 SM00047 Lysozyme subfamily 2 C380_20975 SM00345 helix_turn_helix gluconate operon transcriptional repressor C380_21030 SM00855 Phosphoglycerate mutase family C380_21055 SM00382 ATPases associated with a variety of cellular activities C380_21065 SM00354 helix_turn _helix lactose operon repressor C380_21080 SM00849 Metallo-beta-lactamase superfamily C380_21190 SM00905 Dihydroneopterin aldolase C380_21230 SM00342 helix_turn_helix, arabinose operon control protein C380_21265 SM01092 CO dehydrogenase flavoprotein C-terminal domain C380_21270 SM01008 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain C380_21300 SM00855 Phosphoglycerate mutase family C380_21305 SM01119 C380_21305 C380_21315 SM00382 ATPases associated with a variety of cellular activities C380_21325 SM01057 Eukaryotic-type carbonic anhydrase C380_21330 SM00278 Helix-hairpin-helix DNA-binding motif class 1 C380_21370 SM00387 Histidine kinase-like ATPases C380_21370 SM00388 His Kinase A (phosphoacceptor) domain C380_21375 SM00421 helix_turn_helix, Lux Regulon C380_21375 SM00448 cheY-homologous receiver domain C380_21385 SM00248 ankyrin repeats C380_21430 SM00487 DEAD-like helicases superfamily C380_21430 SM00490 helicase superfamily c-terminal domain C380_21440 SM00052 Putative diguanylate phosphodiesterase C380_21440 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) C380_21440 SM00091 PAS domain C380_21440 SM00267 diguanylate cyclase C380_21465 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain C380_21485 SM00881 CoA binding domain C380_21495 SM00346 helix_turn_helix isocitrate lyase regulation C380_21500 SM00849 Metallo-beta-lactamase superfamily C380_21545 SM00347 helix_turn_helix multiple antibiotic resistance protein C380_21560 SM00342 helix_turn_helix, arabinose operon control protein C380_21575 SM00487 DEAD-like helicases superfamily C380_21575 SM00490 helicase superfamily c-terminal domain C380_21635 SM00091 PAS domain C380_21635 SM00421 helix_turn_helix, Lux Regulon C380_21640 SM00267 diguanylate cyclase C380_21675 SM00344 helix_turn_helix ASNC type C380_21690 SM00563 Phosphate acyltransferases C380_21700 SM00530 Helix-turn-helix XRE-family like proteins C380_21755 SM00450 Rhodanese Homology Domain C380_21760 SM00116 Domain in cystathionine beta-synthase and other proteins. C380_21760 SM01091 Transporter associated domain C380_21765 SM00897 FIST N domain C380_21765 SM01204 C380_21765 C380_21835 SM00662 RNA polymerases D C380_21840 SM00363 S4 RNA-binding domain C380_21840 SM01390 C380_21840 C380_21905 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. C380_21910 SM01374 C380_21910 C380_21940 SM00382 ATPases associated with a variety of cellular activities C380_21945 SM00382 ATPases associated with a variety of cellular activities C380_21950 SM00420 helix_turn_helix, Deoxyribose operon repressor C380_21950 SM01134 C380_21950 C380_21970 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. C380_21970 SM00387 Histidine kinase-like ATPases C380_21970 SM00388 His Kinase A (phosphoacceptor) domain C380_21970 SM00448 cheY-homologous receiver domain C380_21975 SM00138 Methyltransferase, chemotaxis proteins C380_21985 SM00387 Histidine kinase-like ATPases C380_21985 SM00388 His Kinase A (phosphoacceptor) domain C380_21985 SM00448 cheY-homologous receiver domain C380_21990 SM00448 cheY-homologous receiver domain C380_22010 SM00487 DEAD-like helicases superfamily C380_22010 SM00490 helicase superfamily c-terminal domain C380_22015 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. C380_22055 SM00986 Uracil DNA glycosylase superfamily C380_22055 SM00987 UreE urease accessory protein, C-terminal domain C380_22085 SM00830 Chorismate mutase type II C380_22100 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). C380_22100 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain C380_22120 SM00448 cheY-homologous receiver domain C380_22120 SM00862 Transcriptional regulatory protein, C terminal C380_22125 SM00387 Histidine kinase-like ATPases C380_22260 SM00981 C380_22260 C380_22275 SM00382 ATPases associated with a variety of cellular activities C380_22295 SM00836 DALR anticodon binding domain C380_22295 SM01016 Arginyl tRNA synthetase N terminal dom C380_22320 SM00387 Histidine kinase-like ATPases C380_22320 SM00388 His Kinase A (phosphoacceptor) domain C380_22320 SM00448 cheY-homologous receiver domain C380_22330 SM00421 helix_turn_helix, Lux Regulon C380_22330 SM00448 cheY-homologous receiver domain C380_22340 SM00882 Coenzyme A transferase C380_22490 SM01001 AIR carboxylase C380_22590 SM01002 Alanine dehydrogenase/PNT, C-terminal domain C380_22590 SM01003 Alanine dehydrogenase/PNT, N-terminal domain C380_22605 SM00387 Histidine kinase-like ATPases C380_22605 SM00388 His Kinase A (phosphoacceptor) domain C380_22610 SM00448 cheY-homologous receiver domain C380_22610 SM00862 Transcriptional regulatory protein, C terminal C380_22620 SM00014 Acid phosphatase homologues C380_22635 SM01011 Aminopeptidase P, N-terminal domain C380_22650 SM00861 Transketolase, pyrimidine binding domain C380_22655 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain C380_22750 SM00382 ATPases associated with a variety of cellular activities C380_22755 SM00382 ATPases associated with a variety of cellular activities C380_22775 SM00345 helix_turn_helix gluconate operon transcriptional repressor C380_22775 SM00895 C380_22775 C380_22905 SM00822 C380_22905 C380_22930 SM00448 cheY-homologous receiver domain C380_22930 SM00862 Transcriptional regulatory protein, C terminal C380_22935 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain C380_22935 SM00387 Histidine kinase-like ATPases C380_22935 SM00388 His Kinase A (phosphoacceptor) domain C380_22940 SM00382 ATPases associated with a variety of cellular activities C380_22955 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). C380_22955 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain C380_22985 SM00934 Orotidine 5'-phosphate decarboxylase / HUMPS family C380_23020 SM00257 Lysin motif C380_23045 SM01323 C380_23045 C380_23055 SM00344 helix_turn_helix ASNC type C380_23060 SM00925 MltA specific insert domain C380_23075 SM00421 helix_turn_helix, Lux Regulon C380_23075 SM00448 cheY-homologous receiver domain C380_23080 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) C380_23080 SM00091 PAS domain C380_23080 SM00387 Histidine kinase-like ATPases C380_23080 SM00388 His Kinase A (phosphoacceptor) domain C380_23215 SM01322 C380_23215 C380_23270 SM00849 Metallo-beta-lactamase superfamily C380_23275 SM00044 Adenylyl- / guanylyl cyclase, catalytic domain C380_23275 SM01080 C380_23275 C380_23280 SM00240 Forkhead associated domain C380_23285 SM00331 Sigma factor PP2C-like phosphatases C380_23285 SM00332 Serine/threonine phosphatases, family 2C, catalytic domain C380_23290 SM00220 Serine/Threonine protein kinases, catalytic domain C380_23290 SM01080 C380_23290 C380_23300 SM00881 CoA binding domain C380_23310 SM00859 Semialdehyde dehydrogenase, NAD binding domain C380_23320 SM00382 ATPases associated with a variety of cellular activities C380_23345 SM00448 cheY-homologous receiver domain C380_23345 SM00862 Transcriptional regulatory protein, C terminal C380_23350 SM00387 Histidine kinase-like ATPases C380_23350 SM00388 His Kinase A (phosphoacceptor) domain C380_23375 SM00317 SET (Su(var)3-9, Enhancer-of-zeste, Trithorax) domain C380_23380 SM00151 SWI complex, BAF60b domains C380_23380 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain C380_23380 SM00437 Bacterial DNA topoisomerase I DNA-binding domain C380_23380 SM00493 C380_23380 C380_23400 SM00342 helix_turn_helix, arabinose operon control protein C380_23415 SM00903 Flavin reductase like domain C380_23435 SM01144 C380_23435 C380_23590 SM00448 cheY-homologous receiver domain C380_23590 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. C380_23595 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) C380_23595 SM00091 PAS domain C380_23595 SM00387 Histidine kinase-like ATPases C380_23595 SM00388 His Kinase A (phosphoacceptor) domain C380_23595 SM00448 cheY-homologous receiver domain C380_23650 SM00919 Malic enzyme, NAD binding domain C380_23650 SM01274 C380_23650 C380_23670 SM00650 Ribosomal RNA adenine dimethylases C380_23695 SM00267 diguanylate cyclase C380_23790 SM00267 diguanylate cyclase C380_23795 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). C380_23795 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain C380_23825 SM00360 RNA recognition motif C380_23830 SM00360 RNA recognition motif C380_23850 SM00116 Domain in cystathionine beta-synthase and other proteins. C380_23860 SM00052 Putative diguanylate phosphodiesterase C380_23860 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. C380_23860 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) C380_23860 SM00267 diguanylate cyclase C380_23860 SM00448 cheY-homologous receiver domain C380_23875 SM00100 Cyclic nucleotide-monophosphate binding domain C380_23900 SM01234 C380_23900