locus-tag class description YS110_00005 PF13356 Arm DNA-binding domain YS110_00005 PF14659 Phage integrase, N-terminal SAM-like domain YS110_00005 PF00589 Phage integrase family YS110_00010 PF05973 Phage derived protein Gp49-like (DUF891) YS110_00020 PF01548 Transposase YS110_00020 PF02371 Transposase IS116/IS110/IS902 family YS110_00050 PF02384 N-6 DNA Methylase YS110_00055 PF09572 XamI restriction endonuclease YS110_00105 PF00669 Bacterial flagellin N-terminal helical region YS110_00105 PF00700 Bacterial flagellin C-terminal helical region YS110_00140 PF02885 Glycosyl transferase family, helical bundle domain YS110_00140 PF00591 Glycosyl transferase family, a/b domain YS110_00140 PF07831 Pyrimidine nucleoside phosphorylase C-terminal domain YS110_00145 PF14572 Phosphoribosyl synthetase-associated domain YS110_00145 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase YS110_00160 PF01381 Helix-turn-helix YS110_00165 PF03186 CobD/Cbib protein YS110_00175 PF00144 Beta-lactamase YS110_00180 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain YS110_00180 PF07685 CobB/CobQ-like glutamine amidotransferase domain YS110_00185 PF08241 Methyltransferase domain YS110_00190 PF02277 Phosphoribosyltransferase YS110_00195 PF00990 Diguanylate cyclase, GGDEF domain YS110_00200 PF10576 Iron-sulfur binding domain of endonuclease III YS110_00200 PF00633 Helix-hairpin-helix motif YS110_00200 PF00730 HhH-GPD superfamily base excision DNA repair protein YS110_00210 PF00155 Aminotransferase class I and II YS110_00215 PF04102 SlyX YS110_00225 PF12843 Putative quorum-sensing-regulated virulence factor YS110_00235 PF01814 Hemerythrin HHE cation binding domain YS110_00235 PF04405 Domain of Unknown function (DUF542) YS110_00240 PF02082 Transcriptional regulator YS110_00245 PF03466 LysR substrate binding domain YS110_00245 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YS110_00250 PF01810 LysE type translocator YS110_00255 PF03180 NLPA lipoprotein YS110_00295 PF00072 Response regulator receiver domain YS110_00295 PF00196 Bacterial regulatory proteins, luxR family YS110_00300 PF03461 TRCF domain YS110_00300 PF00271 Helicase conserved C-terminal domain YS110_00300 PF00270 DEAD/DEAH box helicase YS110_00300 PF02559 CarD-like/TRCF domain YS110_00300 PF17757 UvrB interaction domain YS110_00305 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase YS110_00305 PF02542 YgbB family YS110_00310 PF02542 YgbB family YS110_00315 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YS110_00315 PF00512 His Kinase A (phospho-acceptor) domain YS110_00315 PF00672 HAMP domain YS110_00320 PF00486 Transcriptional regulatory protein, C terminal YS110_00320 PF00072 Response regulator receiver domain YS110_00330 PF00106 short chain dehydrogenase YS110_00340 PF04607 Region found in RelA / SpoT proteins YS110_00340 PF02824 TGS domain YS110_00340 PF13291 ACT domain YS110_00355 PF05430 S-adenosyl-L-methionine-dependent methyltransferase YS110_00355 PF01266 FAD dependent oxidoreductase YS110_00360 PF03458 UPF0126 domain YS110_00365 PF04362 Bacterial Fe(2+) trafficking YS110_00375 PF03358 NADPH-dependent FMN reductase YS110_00380 PF09084 NMT1/THI5 like YS110_00390 PF00528 Binding-protein-dependent transport system inner membrane component YS110_00395 PF00005 ABC transporter YS110_00400 PF03459 TOBE domain YS110_00405 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YS110_00405 PF03466 LysR substrate binding domain YS110_00415 PF00132 Bacterial transferase hexapeptide (six repeats) YS110_00425 PF00266 Aminotransferase class-V YS110_00440 PF02666 Phosphatidylserine decarboxylase YS110_00445 PF00571 CBS domain YS110_00445 PF00005 ABC transporter YS110_00450 PF01176 Translation initiation factor 1A / IF-1 YS110_00460 PF05958 tRNA (Uracil-5-)-methyltransferase YS110_00475 PF00529 HlyD membrane-fusion protein of T1SS YS110_00475 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion YS110_00480 PF00873 AcrB/AcrD/AcrF family YS110_00485 PF02321 Outer membrane efflux protein YS110_00505 PF04279 Intracellular septation protein A YS110_00510 PF01641 SelR domain YS110_00515 PF02696 Uncharacterized ACR, YdiU/UPF0061 family YS110_00520 PF13545 Crp-like helix-turn-helix domain YS110_00520 PF00027 Cyclic nucleotide-binding domain YS110_00530 PF13193 AMP-binding enzyme C-terminal domain YS110_00530 PF00501 AMP-binding enzyme YS110_00540 PF02653 Branched-chain amino acid transport system / permease component YS110_00550 PF12399 Branched-chain amino acid ATP-binding cassette transporter YS110_00550 PF00005 ABC transporter YS110_00555 PF00005 ABC transporter YS110_00560 PF00378 Enoyl-CoA hydratase/isomerase YS110_00560 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain YS110_00560 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain YS110_00565 PF00108 Thiolase, N-terminal domain YS110_00565 PF02803 Thiolase, C-terminal domain YS110_00570 PF01841 Transglutaminase-like superfamily YS110_00570 PF08379 Bacterial transglutaminase-like N-terminal region YS110_00575 PF14403 Circularly permuted ATP-grasp type 2 YS110_00575 PF04168 A predicted alpha-helical domain with a conserved ER motif. YS110_00590 PF08379 Bacterial transglutaminase-like N-terminal region YS110_00590 PF01841 Transglutaminase-like superfamily YS110_00600 PF14403 Circularly permuted ATP-grasp type 2 YS110_00620 PF01027 Inhibitor of apoptosis-promoting Bax1 YS110_00625 PF03928 Haem-degrading YS110_00630 PF09285 Elongation factor P, C-terminal YS110_00630 PF08207 Elongation factor P (EF-P) KOW-like domain YS110_00630 PF01132 Elongation factor P (EF-P) OB domain YS110_00640 PF08459 UvrC Helix-hairpin-helix N-terminal YS110_00640 PF01541 GIY-YIG catalytic domain YS110_00645 PF01066 CDP-alcohol phosphatidyltransferase YS110_00650 PF00216 Bacterial DNA-binding protein YS110_00660 PF05698 Bacterial trigger factor protein (TF) C-terminus YS110_00685 PF07715 TonB-dependent Receptor Plug Domain YS110_00685 PF00593 TonB dependent receptor YS110_00705 PF03466 LysR substrate binding domain YS110_00705 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YS110_00710 PF02540 NAD synthase YS110_00710 PF00795 Carbon-nitrogen hydrolase YS110_00715 PF00543 Nitrogen regulatory protein P-II YS110_00720 PF03641 Possible lysine decarboxylase YS110_00725 PF01219 Prokaryotic diacylglycerol kinase YS110_00745 PF04542 Sigma-70 region 2 YS110_00745 PF08281 Sigma-70, region 4 YS110_00750 PF00205 Thiamine pyrophosphate enzyme, central domain YS110_00750 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain YS110_00750 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain YS110_00755 PF10369 Small subunit of acetolactate synthase YS110_00760 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain YS110_00760 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain YS110_00765 PF01066 CDP-alcohol phosphatidyltransferase YS110_00770 PF08502 LeuA allosteric (dimerisation) domain YS110_00770 PF00682 HMGL-like YS110_00775 PF00768 D-alanyl-D-alanine carboxypeptidase YS110_00780 PF02537 CrcB-like protein, Camphor Resistance (CrcB) YS110_00785 PF03334 Na+/H+ antiporter subunit YS110_00790 PF04066 Multiple resistance and pH regulation protein F (MrpF / PhaF) YS110_00800 PF00361 Proton-conducting membrane transporter YS110_00805 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L YS110_00810 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus YS110_00810 PF00361 Proton-conducting membrane transporter YS110_00810 PF04039 Domain related to MnhB subunit of Na+/H+ antiporter YS110_00810 PF13244 Domain of unknown function (DUF4040) YS110_00820 PF18073 Rubredoxin metal binding domain YS110_00830 PF00216 Bacterial DNA-binding protein YS110_00835 PF00575 S1 RNA binding domain YS110_00840 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) YS110_00845 PF02153 Prephenate dehydrogenase YS110_00850 PF00800 Prephenate dehydratase YS110_00850 PF01817 Chorismate mutase type II YS110_00850 PF01842 ACT domain YS110_00855 PF00266 Aminotransferase class-V YS110_00860 PF03989 DNA gyrase C-terminal domain, beta-propeller YS110_00860 PF00521 DNA gyrase/topoisomerase IV, subunit A YS110_00865 PF00691 OmpA family YS110_00870 PF00378 Enoyl-CoA hydratase/isomerase YS110_00880 PF01668 SmpB protein YS110_00885 PF03364 Polyketide cyclase / dehydrase and lipid transport YS110_00890 PF03658 RnfH family Ubiquitin YS110_00900 PF00571 CBS domain YS110_00900 PF00478 IMP dehydrogenase / GMP reductase domain YS110_00905 PF00117 Glutamine amidotransferase class-I YS110_00905 PF00958 GMP synthase C terminal domain YS110_00905 PF02540 NAD synthase YS110_00910 PF13356 Arm DNA-binding domain YS110_00910 PF00589 Phage integrase family YS110_00960 PF04002 RadC-like JAB domain YS110_00975 PF06067 Domain of unknown function (DUF932) YS110_00980 PF02195 ParB-like nuclease domain YS110_00995 PF05284 Protein of unknown function (DUF736) YS110_01025 PF13614 AAA domain YS110_01040 PF10502 Signal peptidase, peptidase S26 YS110_01050 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YS110_01050 PF03466 LysR substrate binding domain YS110_01060 PF00724 NADH:flavin oxidoreductase / NADH oxidase family YS110_01065 PF00857 Isochorismatase family YS110_01085 PF00155 Aminotransferase class I and II YS110_01100 PF13537 Glutamine amidotransferase domain YS110_01100 PF00733 Asparagine synthase YS110_01105 PF07690 Major Facilitator Superfamily YS110_01110 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YS110_01110 PF03466 LysR substrate binding domain YS110_01120 PF02534 Type IV secretory system Conjugative DNA transfer YS110_01130 PF00437 Type II/IV secretion system protein YS110_01135 PF04956 TrbC/VIRB2 family YS110_01145 PF03135 CagE, TrbE, VirB family, component of type IV transporter system YS110_01160 PF04610 TrbL/VirB6 plasmid conjugal transfer protein YS110_01170 PF03524 Conjugal transfer protein YS110_01175 PF03743 Bacterial conjugation TrbI-like protein YS110_01230 PF00106 short chain dehydrogenase YS110_01235 PF13416 Bacterial extracellular solute-binding protein YS110_01250 PF04304 Protein of unknown function (DUF454) YS110_01255 PF01327 Polypeptide deformylase YS110_01270 PF08335 GlnD PII-uridylyltransferase YS110_01270 PF01909 Nucleotidyltransferase domain YS110_01270 PF01966 HD domain YS110_01275 PF00557 Metallopeptidase family M24 YS110_01280 PF02769 AIR synthase related protein, C-terminal domain YS110_01280 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain YS110_01280 PF18076 Formylglycinamide ribonucleotide amidotransferase N-terminal YS110_01285 PF05661 Protein of unknown function (DUF808) YS110_01290 PF03922 OmpW family YS110_01295 PF01053 Cys/Met metabolism PLP-dependent enzyme YS110_01305 PF01136 Peptidase family U32 YS110_01305 PF12392 Collagenase YS110_01310 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region YS110_01320 PF14437 MafB19-like deaminase YS110_01325 PF17676 LD-carboxypeptidase C-terminal domain YS110_01325 PF02016 LD-carboxypeptidase N-terminal domain YS110_01330 PF01734 Patatin-like phospholipase YS110_01335 PF00171 Aldehyde dehydrogenase family YS110_01335 PF01619 Proline dehydrogenase YS110_01335 PF14850 DNA-binding domain of Proline dehydrogenase YS110_01335 PF18327 Proline utilization A proline dehydrogenase N-terminal domain YS110_01340 PF16701 Adenylate cyclase regulatory domain YS110_01340 PF00211 Adenylate and Guanylate cyclase catalytic domain YS110_01345 PF00441 Acyl-CoA dehydrogenase, C-terminal domain YS110_01345 PF02770 Acyl-CoA dehydrogenase, middle domain YS110_01345 PF02771 Acyl-CoA dehydrogenase, N-terminal domain YS110_01355 PF00027 Cyclic nucleotide-binding domain YS110_01355 PF13545 Crp-like helix-turn-helix domain YS110_01365 PF02581 Thiamine monophosphate synthase YS110_01370 PF05690 Thiazole biosynthesis protein ThiG YS110_01380 PF01266 FAD dependent oxidoreductase YS110_01385 PF08543 Phosphomethylpyrimidine kinase YS110_01390 PF01757 Acyltransferase family YS110_01395 PF00939 Sodium:sulfate symporter transmembrane region YS110_01405 PF00563 EAL domain YS110_01405 PF00990 Diguanylate cyclase, GGDEF domain YS110_01405 PF03707 Bacterial signalling protein N terminal repeat YS110_01410 PF02743 Cache domain YS110_01410 PF00211 Adenylate and Guanylate cyclase catalytic domain YS110_01410 PF00672 HAMP domain YS110_01420 PF07992 Pyridine nucleotide-disulphide oxidoreductase YS110_01425 PF11953 Domain of unknown function (DUF3470) YS110_01425 PF00037 4Fe-4S binding domain YS110_01430 PF00009 Elongation factor Tu GTP binding domain YS110_01435 PF01507 Phosphoadenosine phosphosulfate reductase family YS110_01440 PF01507 Phosphoadenosine phosphosulfate reductase family YS110_01455 PF01925 Sulfite exporter TauE/SafE YS110_01460 PF01554 MatE YS110_01475 PF01197 Ribosomal protein L31 YS110_01490 PF07992 Pyridine nucleotide-disulphide oxidoreductase YS110_01490 PF00724 NADH:flavin oxidoreductase / NADH oxidase family YS110_01495 PF00378 Enoyl-CoA hydratase/isomerase YS110_01500 PF07660 Secretin and TonB N terminus short domain YS110_01500 PF00593 TonB dependent receptor YS110_01500 PF07715 TonB-dependent Receptor Plug Domain YS110_01505 PF04773 FecR protein YS110_01505 PF16220 Domain of unknown function (DUF4880) YS110_01510 PF08281 Sigma-70, region 4 YS110_01510 PF04542 Sigma-70 region 2 YS110_01520 PF07498 Rho termination factor, N-terminal domain YS110_01520 PF07497 Rho termination factor, RNA-binding domain YS110_01520 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain YS110_01525 PF00085 Thioredoxin YS110_01540 PF12705 PD-(D/E)XK nuclease superfamily YS110_01540 PF00580 UvrD/REP helicase N-terminal domain YS110_01540 PF13361 UvrD-like helicase C-terminal domain YS110_01550 PF04542 Sigma-70 region 2 YS110_01550 PF08281 Sigma-70, region 4 YS110_01550 PF12680 SnoaL-like domain YS110_01565 PF00593 TonB dependent receptor YS110_01565 PF07715 TonB-dependent Receptor Plug Domain YS110_01575 PF01497 Periplasmic binding protein YS110_01580 PF01032 FecCD transport family YS110_01585 PF00005 ABC transporter YS110_01590 PF13649 Methyltransferase domain YS110_01600 PF01032 FecCD transport family YS110_01605 PF00005 ABC transporter YS110_01625 PF01032 FecCD transport family YS110_01630 PF00005 ABC transporter YS110_01640 PF01209 ubiE/COQ5 methyltransferase family YS110_01645 PF01497 Periplasmic binding protein YS110_01655 PF00528 Binding-protein-dependent transport system inner membrane component YS110_01660 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain YS110_01660 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain YS110_01680 PF03600 Citrate transporter YS110_01680 PF02080 TrkA-C domain YS110_01700 PF00535 Glycosyl transferase family 2 YS110_01730 PF00005 ABC transporter YS110_01735 PF01061 ABC-2 type transporter YS110_01820 PF10124 Mu-like prophage major head subunit gpT YS110_01830 PF10123 Mu-like prophage I protein YS110_01850 PF04381 Putative exonuclease, RdgC YS110_01995 PF03237 Terminase-like family YS110_02000 PF06074 Protein of unknown function (DUF935) YS110_02005 PF04233 Phage Mu protein F like protein YS110_02050 PF03030 Inorganic H+ pyrophosphatase YS110_02055 PF00719 Inorganic pyrophosphatase YS110_02065 PF01584 CheW-like domain YS110_02070 PF00672 HAMP domain YS110_02070 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain YS110_02070 PF02203 Tar ligand binding domain homologue YS110_02075 PF13609 Gram-negative porin YS110_02100 PF03707 Bacterial signalling protein N terminal repeat YS110_02100 PF00990 Diguanylate cyclase, GGDEF domain YS110_02100 PF00563 EAL domain YS110_02110 PF02503 Polyphosphate kinase middle domain YS110_02110 PF13090 Polyphosphate kinase C-terminal domain 2 YS110_02110 PF13089 Polyphosphate kinase N-terminal domain YS110_02110 PF17941 Polyphosphate kinase C-terminal domain 1 YS110_02120 PF07879 PHB/PHA accumulation regulator DNA-binding domain YS110_02120 PF05233 PHB accumulation regulatory domain YS110_02125 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YS110_02125 PF03466 LysR substrate binding domain YS110_02135 PF01256 Carbohydrate kinase YS110_02135 PF03853 YjeF-related protein N-terminus YS110_02140 PF01266 FAD dependent oxidoreductase YS110_02145 PF00318 Ribosomal protein S2 YS110_02150 PF00889 Elongation factor TS YS110_02155 PF00696 Amino acid kinase family YS110_02160 PF01765 Ribosome recycling factor YS110_02165 PF01255 Putative undecaprenyl diphosphate synthase YS110_02175 PF13288 DXP reductoisomerase C-terminal domain YS110_02175 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain YS110_02175 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase YS110_02180 PF17820 PDZ domain YS110_02180 PF02163 Peptidase family M50 YS110_02185 PF01103 Surface antigen YS110_02185 PF07244 Surface antigen variable number repeat YS110_02195 PF00132 Bacterial transferase hexapeptide (six repeats) YS110_02195 PF14602 Hexapeptide repeat of succinyl-transferase YS110_02195 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD YS110_02200 PF07977 FabA-like domain YS110_02205 PF00132 Bacterial transferase hexapeptide (six repeats) YS110_02205 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 YS110_02210 PF02684 Lipid-A-disaccharide synthetase YS110_02215 PF01351 Ribonuclease HII YS110_02220 PF08032 RNA 2'-O ribose methyltransferase substrate binding YS110_02220 PF00588 SpoU rRNA Methylase family YS110_02225 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain YS110_02225 PF00117 Glutamine amidotransferase class-I YS110_02230 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain YS110_02230 PF02142 MGS-like domain YS110_02230 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain YS110_02235 PF01272 Transcription elongation factor, GreA/GreB, C-term YS110_02235 PF03449 Transcription elongation factor, N-terminal YS110_02255 PF01985 CRS1 / YhbY (CRM) domain YS110_02260 PF01728 FtsJ-like methyltransferase YS110_02265 PF06480 FtsH Extracellular YS110_02265 PF01434 Peptidase family M41 YS110_02265 PF00004 ATPase family associated with various cellular activities (AAA) YS110_02265 PF17862 AAA+ lid domain YS110_02270 PF00809 Pterin binding enzyme YS110_02275 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I YS110_02275 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II YS110_02275 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III YS110_02275 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain YS110_02290 PF16078 2-oxoglutarate dehydrogenase N-terminus YS110_02290 PF02779 Transketolase, pyrimidine binding domain YS110_02290 PF16870 2-oxoglutarate dehydrogenase C-terminal YS110_02290 PF00676 Dehydrogenase E1 component YS110_02295 PF02817 e3 binding domain YS110_02295 PF00364 Biotin-requiring enzyme YS110_02295 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) YS110_02300 PF07992 Pyridine nucleotide-disulphide oxidoreductase YS110_02300 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain YS110_02305 PF03969 AFG1-like ATPase YS110_02320 PF13307 Helicase C-terminal domain YS110_02320 PF04851 Type III restriction enzyme, res subunit YS110_02325 PF04542 Sigma-70 region 2 YS110_02325 PF08281 Sigma-70, region 4 YS110_02330 PF16220 Domain of unknown function (DUF4880) YS110_02330 PF04773 FecR protein YS110_02335 PF07715 TonB-dependent Receptor Plug Domain YS110_02335 PF07660 Secretin and TonB N terminus short domain YS110_02335 PF00593 TonB dependent receptor YS110_02345 PF01850 PIN domain YS110_02350 PF02604 Antitoxin Phd_YefM, type II toxin-antitoxin system YS110_02370 PF01850 PIN domain YS110_02380 PF02690 Na+/Pi-cotransporter YS110_02390 PF00291 Pyridoxal-phosphate dependent enzyme YS110_02410 PF05872 Bacterial protein of unknown function (DUF853) YS110_02415 PF01709 Transcriptional regulator YS110_02420 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain YS110_02420 PF02843 Phosphoribosylglycinamide synthetase, C domain YS110_02420 PF02844 Phosphoribosylglycinamide synthetase, N domain YS110_02425 PF01218 Coproporphyrinogen III oxidase YS110_02435 PF02590 Predicted SPOUT methyltransferase YS110_02440 PF02545 Maf-like protein YS110_02455 PF08406 CbbQ/NirQ/NorQ C-terminal YS110_02455 PF07728 AAA domain (dynein-related subfamily) YS110_02460 PF00115 Cytochrome C and Quinol oxidase polypeptide I YS110_02465 PF00034 Cytochrome c YS110_02470 PF03626 Prokaryotic Cytochrome C oxidase subunit IV YS110_02475 PF00510 Cytochrome c oxidase subunit III YS110_02480 PF13442 Cytochrome C oxidase, cbb3-type, subunit III YS110_02485 PF04055 Radical SAM superfamily YS110_02485 PF13186 Iron-sulfur cluster-binding domain YS110_02490 PF17805 AsnC-like ligand binding domain YS110_02495 PF17805 AsnC-like ligand binding domain YS110_02500 PF17805 AsnC-like ligand binding domain YS110_02510 PF13442 Cytochrome C oxidase, cbb3-type, subunit III YS110_02515 PF13442 Cytochrome C oxidase, cbb3-type, subunit III YS110_02520 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases YS110_02520 PF14824 Sirohaem biosynthesis protein central YS110_02520 PF10414 Sirohaem synthase dimerisation region YS110_02525 PF10150 Ribonuclease E/G family YS110_02525 PF00575 S1 RNA binding domain YS110_02530 PF07238 PilZ domain YS110_02540 PF02371 Transposase IS116/IS110/IS902 family YS110_02540 PF01548 Transposase YS110_02550 PF01966 HD domain YS110_02555 PF00892 EamA-like transporter family YS110_02560 PF03466 LysR substrate binding domain YS110_02560 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YS110_02565 PF05175 Methyltransferase small domain YS110_02565 PF17827 PrmC N-terminal domain YS110_02580 PF00877 NlpC/P60 family YS110_02590 PF00365 Phosphofructokinase YS110_02595 PF16177 Acetyl-coenzyme A synthetase N-terminus YS110_02595 PF00501 AMP-binding enzyme YS110_02595 PF13193 AMP-binding enzyme C-terminal domain YS110_02600 PF00563 EAL domain YS110_02600 PF00990 Diguanylate cyclase, GGDEF domain YS110_02600 PF03707 Bacterial signalling protein N terminal repeat YS110_02610 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain YS110_02610 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain YS110_02615 PF02805 Metal binding domain of Ada YS110_02615 PF12833 Helix-turn-helix domain YS110_02620 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain YS110_02620 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II YS110_02620 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III YS110_02620 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I YS110_02625 PF00534 Glycosyl transferases group 1 YS110_02625 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) YS110_02630 PF03707 Bacterial signalling protein N terminal repeat YS110_02630 PF00990 Diguanylate cyclase, GGDEF domain YS110_02630 PF00563 EAL domain YS110_02635 PF02321 Outer membrane efflux protein YS110_02650 PF00873 AcrB/AcrD/AcrF family YS110_02655 PF13533 Biotin-lipoyl like YS110_02660 PF00440 Bacterial regulatory proteins, tetR family YS110_02665 PF00582 Universal stress protein family YS110_02670 PF01814 Hemerythrin HHE cation binding domain YS110_02675 PF02803 Thiolase, C-terminal domain YS110_02675 PF00108 Thiolase, N-terminal domain YS110_02685 PF00849 RNA pseudouridylate synthase YS110_02690 PF00072 Response regulator receiver domain YS110_02690 PF08448 PAS fold YS110_02690 PF00512 His Kinase A (phospho-acceptor) domain YS110_02690 PF13188 PAS domain YS110_02690 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YS110_02700 PF00155 Aminotransferase class I and II YS110_02705 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YS110_02705 PF03466 LysR substrate binding domain YS110_02725 PF00883 Cytosol aminopeptidase family, catalytic domain YS110_02725 PF02789 Cytosol aminopeptidase family, N-terminal domain YS110_02740 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain YS110_02740 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain YS110_02750 PF01726 LexA DNA binding domain YS110_02750 PF00717 Peptidase S24-like YS110_02755 PF00710 Asparaginase, N-terminal YS110_02755 PF17763 Glutaminase/Asparaginase C-terminal domain YS110_02775 PF07715 TonB-dependent Receptor Plug Domain YS110_02775 PF07660 Secretin and TonB N terminus short domain YS110_02775 PF00593 TonB dependent receptor YS110_02780 PF04773 FecR protein YS110_02780 PF16220 Domain of unknown function (DUF4880) YS110_02785 PF08281 Sigma-70, region 4 YS110_02785 PF04542 Sigma-70 region 2 YS110_02790 PF05191 Adenylate kinase, active site lid YS110_02795 PF02348 Cytidylyltransferase YS110_02800 PF03966 Trm112p-like protein YS110_02805 PF02606 Tetraacyldisaccharide-1-P 4'-kinase YS110_02810 PF02472 Biopolymer transport protein ExbD/TolR YS110_02815 PF01618 MotA/TolQ/ExbB proton channel family YS110_02820 PF02601 Exonuclease VII, large subunit YS110_02820 PF13742 OB-fold nucleic acid binding domain YS110_02825 PF02777 Iron/manganese superoxide dismutases, C-terminal domain YS110_02825 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain YS110_02830 PF03971 Monomeric isocitrate dehydrogenase YS110_02845 PF00180 Isocitrate/isopropylmalate dehydrogenase YS110_02860 PF07715 TonB-dependent Receptor Plug Domain YS110_02860 PF00593 TonB dependent receptor YS110_02865 PF16220 Domain of unknown function (DUF4880) YS110_02865 PF04773 FecR protein YS110_02880 PF00291 Pyridoxal-phosphate dependent enzyme YS110_02890 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase YS110_02890 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase YS110_02900 PF00441 Acyl-CoA dehydrogenase, C-terminal domain YS110_02900 PF02771 Acyl-CoA dehydrogenase, N-terminal domain YS110_02900 PF02770 Acyl-CoA dehydrogenase, middle domain YS110_02905 PF00171 Aldehyde dehydrogenase family YS110_02910 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YS110_02910 PF03466 LysR substrate binding domain YS110_02930 PF00324 Amino acid permease YS110_02935 PF00563 EAL domain YS110_02935 PF00990 Diguanylate cyclase, GGDEF domain YS110_02935 PF03707 Bacterial signalling protein N terminal repeat YS110_02940 PF02463 RecF/RecN/SMC N terminal domain YS110_02940 PF06470 SMC proteins Flexible Hinge Domain YS110_02955 PF12826 Helix-hairpin-helix motif YS110_02955 PF03119 NAD-dependent DNA ligase C4 zinc finger domain YS110_02955 PF03120 NAD-dependent DNA ligase OB-fold domain YS110_02955 PF01653 NAD-dependent DNA ligase adenylation domain YS110_02955 PF00533 BRCA1 C Terminus (BRCT) domain YS110_02975 PF01557 Fumarylacetoacetate (FAA) hydrolase family YS110_02985 PF13417 Glutathione S-transferase, N-terminal domain YS110_02990 PF02578 Multi-copper polyphenol oxidoreductase laccase YS110_03000 PF07167 Poly-beta-hydroxybutyrate polymerase (PhaC) N-terminus YS110_03005 PF00108 Thiolase, N-terminal domain YS110_03005 PF02803 Thiolase, C-terminal domain YS110_03010 PF00106 short chain dehydrogenase YS110_03020 PF17761 DUF1016 N-terminal domain YS110_03020 PF06250 YhcG PDDEXK nuclease domain YS110_03025 PF06965 Na+/H+ antiporter 1 YS110_03035 PF03358 NADPH-dependent FMN reductase YS110_03040 PF03960 ArsC family YS110_03045 PF01758 Sodium Bile acid symporter family YS110_03055 PF01022 Bacterial regulatory protein, arsR family YS110_03065 PF06067 Domain of unknown function (DUF932) YS110_03070 PF17762 HTH domain found in ParB protein YS110_03070 PF02195 ParB-like nuclease domain YS110_03080 PF05284 Protein of unknown function (DUF736) YS110_03085 PF01381 Helix-turn-helix YS110_03110 PF13614 AAA domain YS110_03125 PF10502 Signal peptidase, peptidase S26 YS110_03140 PF00486 Transcriptional regulatory protein, C terminal YS110_03140 PF00072 Response regulator receiver domain YS110_03145 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YS110_03145 PF00512 His Kinase A (phospho-acceptor) domain YS110_03145 PF08521 Two-component sensor kinase N-terminal YS110_03155 PF01292 Prokaryotic cytochrome b561 YS110_03165 PF00873 AcrB/AcrD/AcrF family YS110_03185 PF08019 Phosphoethanolamine transferase EptA/EptB YS110_03185 PF00884 Sulfatase YS110_03190 PF01219 Prokaryotic diacylglycerol kinase YS110_03195 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YS110_03195 PF03466 LysR substrate binding domain YS110_03205 PF02534 Type IV secretory system Conjugative DNA transfer YS110_03215 PF00437 Type II/IV secretion system protein YS110_03220 PF04956 TrbC/VIRB2 family YS110_03230 PF03135 CagE, TrbE, VirB family, component of type IV transporter system YS110_03245 PF04610 TrbL/VirB6 plasmid conjugal transfer protein YS110_03255 PF03524 Conjugal transfer protein YS110_03260 PF03743 Bacterial conjugation TrbI-like protein YS110_03270 PF00005 ABC transporter YS110_03270 PF12848 ABC transporter YS110_03275 PF05175 Methyltransferase small domain YS110_03280 PF01546 Peptidase family M20/M25/M40 YS110_03280 PF07687 Peptidase dimerisation domain YS110_03285 PF00437 Type II/IV secretion system protein YS110_03290 PF14602 Hexapeptide repeat of succinyl-transferase YS110_03290 PF14805 Tetrahydrodipicolinate N-succinyltransferase N-terminal YS110_03295 PF00155 Aminotransferase class I and II YS110_03300 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain YS110_03300 PF00672 HAMP domain YS110_03305 PF04060 Putative Fe-S cluster YS110_03315 PF01207 Dihydrouridine synthase (Dus) YS110_03320 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch YS110_03320 PF05222 Alanine dehydrogenase/PNT, N-terminal domain YS110_03320 PF01262 Alanine dehydrogenase/PNT, C-terminal domain YS110_03325 PF02233 NAD(P) transhydrogenase beta subunit YS110_03330 PF00005 ABC transporter YS110_03330 PF09383 NIL domain YS110_03335 PF00528 Binding-protein-dependent transport system inner membrane component YS110_03340 PF03180 NLPA lipoprotein YS110_03345 PF03358 NADPH-dependent FMN reductase YS110_03360 PF01292 Prokaryotic cytochrome b561 YS110_03370 PF01625 Peptide methionine sulfoxide reductase YS110_03380 PF00593 TonB dependent receptor YS110_03380 PF07715 TonB-dependent Receptor Plug Domain YS110_03385 PF00132 Bacterial transferase hexapeptide (six repeats) YS110_03400 PF01243 Pyridoxamine 5'-phosphate oxidase YS110_03400 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region YS110_03415 PF17954 Quercetinase C-terminal cupin domain YS110_03415 PF02678 Pirin YS110_03420 PF04264 YceI-like domain YS110_03430 PF01292 Prokaryotic cytochrome b561 YS110_03435 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YS110_03435 PF03466 LysR substrate binding domain YS110_03440 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily YS110_03445 PF12833 Helix-turn-helix domain YS110_03445 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term YS110_03450 PF00384 Molybdopterin oxidoreductase YS110_03450 PF01568 Molydopterin dinucleotide binding domain YS110_03455 PF13247 4Fe-4S dicluster domain YS110_03465 PF02613 Nitrate reductase delta subunit YS110_03470 PF02771 Acyl-CoA dehydrogenase, N-terminal domain YS110_03470 PF02770 Acyl-CoA dehydrogenase, middle domain YS110_03470 PF00441 Acyl-CoA dehydrogenase, C-terminal domain YS110_03485 PF06314 Acetoacetate decarboxylase (ADC) YS110_03520 PF01062 Bestrophin, RFP-TM, chloride channel YS110_03530 PF01022 Bacterial regulatory protein, arsR family YS110_03540 PF00873 AcrB/AcrD/AcrF family YS110_03545 PF02627 Carboxymuconolactone decarboxylase family YS110_03550 PF02321 Outer membrane efflux protein YS110_03555 PF07992 Pyridine nucleotide-disulphide oxidoreductase YS110_03570 PF00581 Rhodanese-like domain YS110_03590 PF04055 Radical SAM superfamily YS110_03590 PF06968 Biotin and Thiamin Synthesis associated domain YS110_03605 PF18140 Propionyl-coenzyme A carboxylase BT domain YS110_03605 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain YS110_03605 PF00364 Biotin-requiring enzyme YS110_03605 PF00289 Biotin carboxylase, N-terminal domain YS110_03605 PF02785 Biotin carboxylase C-terminal domain YS110_03615 PF01039 Carboxyl transferase domain YS110_03630 PF02310 B12 binding domain YS110_03630 PF01642 Methylmalonyl-CoA mutase YS110_03635 PF07729 FCD domain YS110_03635 PF00392 Bacterial regulatory proteins, gntR family YS110_03640 PF03707 Bacterial signalling protein N terminal repeat YS110_03640 PF00990 Diguanylate cyclase, GGDEF domain YS110_03640 PF00563 EAL domain YS110_03645 PF00501 AMP-binding enzyme YS110_03655 PF00004 ATPase family associated with various cellular activities (AAA) YS110_03655 PF17866 AAA lid domain YS110_03660 PF12848 ABC transporter YS110_03660 PF00005 ABC transporter YS110_03665 PF00271 Helicase conserved C-terminal domain YS110_03665 PF00270 DEAD/DEAH box helicase YS110_03675 PF00501 AMP-binding enzyme YS110_03675 PF13193 AMP-binding enzyme C-terminal domain YS110_03680 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold YS110_03680 PF00271 Helicase conserved C-terminal domain YS110_03680 PF04408 Helicase associated domain (HA2) YS110_03680 PF11898 Domain of unknown function (DUF3418) YS110_03680 PF00270 DEAD/DEAH box helicase YS110_03690 PF01757 Acyltransferase family YS110_03695 PF00696 Amino acid kinase family YS110_03695 PF00583 Acetyltransferase (GNAT) family YS110_03715 PF01966 HD domain YS110_03720 PF02600 Disulfide bond formation protein DsbB YS110_03725 PF12857 TOBE-like domain YS110_03725 PF17850 CysA C-terminal regulatory domain YS110_03725 PF00005 ABC transporter YS110_03730 PF00528 Binding-protein-dependent transport system inner membrane component YS110_03735 PF00528 Binding-protein-dependent transport system inner membrane component YS110_03750 PF03466 LysR substrate binding domain YS110_03750 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YS110_03755 PF02525 Flavodoxin-like fold YS110_03765 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain YS110_03765 PF07992 Pyridine nucleotide-disulphide oxidoreductase YS110_03770 PF02817 e3 binding domain YS110_03770 PF00364 Biotin-requiring enzyme YS110_03770 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) YS110_03775 PF00456 Transketolase, thiamine diphosphate binding domain YS110_03775 PF17831 Pyruvate dehydrogenase E1 component middle domain YS110_03780 PF00989 PAS fold YS110_03780 PF00512 His Kinase A (phospho-acceptor) domain YS110_03780 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YS110_03785 PF00072 Response regulator receiver domain YS110_03785 PF00196 Bacterial regulatory proteins, luxR family YS110_03790 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain YS110_03790 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain YS110_03795 PF01432 Peptidase family M3 YS110_03805 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) YS110_03810 PF01180 Dihydroorotate dehydrogenase YS110_03830 PF03707 Bacterial signalling protein N terminal repeat YS110_03830 PF00990 Diguanylate cyclase, GGDEF domain YS110_03830 PF00563 EAL domain YS110_03845 PF00929 Exonuclease YS110_03850 PF00111 2Fe-2S iron-sulfur cluster binding domain YS110_03855 PF00012 Hsp70 protein YS110_03860 PF07743 HSCB C-terminal oligomerisation domain YS110_03865 PF01521 Iron-sulphur cluster biosynthesis YS110_03870 PF01592 NifU-like N terminal domain YS110_03875 PF00266 Aminotransferase class-V YS110_03880 PF02082 Transcriptional regulator YS110_03885 PF04851 Type III restriction enzyme, res subunit YS110_03885 PF12344 Ultra-violet resistance protein B YS110_03885 PF02151 UvrB/uvrC motif YS110_03885 PF17757 UvrB interaction domain YS110_03885 PF00271 Helicase conserved C-terminal domain YS110_03895 PF00378 Enoyl-CoA hydratase/isomerase YS110_03900 PF00155 Aminotransferase class I and II YS110_03910 PF02653 Branched-chain amino acid transport system / permease component YS110_03915 PF11862 Domain of unknown function (DUF3382) YS110_03915 PF02653 Branched-chain amino acid transport system / permease component YS110_03920 PF12399 Branched-chain amino acid ATP-binding cassette transporter YS110_03920 PF00005 ABC transporter YS110_03925 PF00005 ABC transporter YS110_03940 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase YS110_03945 PF02515 CoA-transferase family III YS110_03950 PF00313 'Cold-shock' DNA-binding domain YS110_03960 PF11842 Domain of unknown function (DUF3362) YS110_03960 PF04055 Radical SAM superfamily YS110_03960 PF08497 Radical SAM N-terminal YS110_03965 PF13458 Periplasmic binding protein YS110_03970 PF02653 Branched-chain amino acid transport system / permease component YS110_03975 PF02653 Branched-chain amino acid transport system / permease component YS110_03975 PF11862 Domain of unknown function (DUF3382) YS110_03980 PF00005 ABC transporter YS110_03980 PF12399 Branched-chain amino acid ATP-binding cassette transporter YS110_03985 PF00005 ABC transporter YS110_03990 PF01205 Uncharacterized protein family UPF0029 YS110_03990 PF09186 Domain of unknown function (DUF1949) YS110_04000 PF01435 Peptidase family M48 YS110_04010 PF00211 Adenylate and Guanylate cyclase catalytic domain YS110_04015 PF00893 Small Multidrug Resistance protein YS110_04020 PF02146 Sir2 family YS110_04025 PF00588 SpoU rRNA Methylase family YS110_04025 PF08032 RNA 2'-O ribose methyltransferase substrate binding YS110_04035 PF04454 Encapsulating protein for peroxidase YS110_04040 PF00756 Putative esterase YS110_04045 PF08240 Alcohol dehydrogenase GroES-like domain YS110_04045 PF00107 Zinc-binding dehydrogenase YS110_04050 PF02583 Metal-sensitive transcriptional repressor YS110_04055 PF00005 ABC transporter YS110_04060 PF13472 GDSL-like Lipase/Acylhydrolase family YS110_04075 PF06296 RelE toxin of RelE / RelB toxin-antitoxin system YS110_04080 PF01053 Cys/Met metabolism PLP-dependent enzyme YS110_04090 PF00916 Sulfate permease family YS110_04090 PF01740 STAS domain YS110_04095 PF00990 Diguanylate cyclase, GGDEF domain YS110_04100 PF10609 NUBPL iron-transfer P-loop NTPase YS110_04105 PF05726 Pirin C-terminal cupin domain YS110_04105 PF02678 Pirin YS110_04120 PF00749 tRNA synthetases class I (E and Q), catalytic domain YS110_04125 PF02390 Putative methyltransferase YS110_04130 PF00990 Diguanylate cyclase, GGDEF domain YS110_04135 PF02272 DHHA1 domain YS110_04135 PF01411 tRNA synthetases class II (A) YS110_04135 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain YS110_04140 PF00155 Aminotransferase class I and II YS110_04145 PF00202 Aminotransferase class-III YS110_04150 PF00005 ABC transporter YS110_04150 PF08402 TOBE domain YS110_04160 PF00528 Binding-protein-dependent transport system inner membrane component YS110_04165 PF00528 Binding-protein-dependent transport system inner membrane component YS110_04170 PF00171 Aldehyde dehydrogenase family YS110_04180 PF01557 Fumarylacetoacetate (FAA) hydrolase family YS110_04195 PF01494 FAD binding domain YS110_04200 PF12697 Alpha/beta hydrolase family YS110_04215 PF02321 Outer membrane efflux protein YS110_04225 PF00005 ABC transporter YS110_04230 PF13533 Biotin-lipoyl like YS110_04245 PF01717 Cobalamin-independent synthase, Catalytic domain YS110_04245 PF08267 Cobalamin-independent synthase, N-terminal domain YS110_04250 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YS110_04250 PF03466 LysR substrate binding domain YS110_04255 PF02785 Biotin carboxylase C-terminal domain YS110_04255 PF00289 Biotin carboxylase, N-terminal domain YS110_04255 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain YS110_04255 PF00682 HMGL-like YS110_04255 PF00364 Biotin-requiring enzyme YS110_04255 PF02436 Conserved carboxylase domain YS110_04260 PF00694 Aconitase C-terminal domain YS110_04260 PF00330 Aconitase family (aconitate hydratase) YS110_04270 PF04303 PrpF protein YS110_04275 PF00330 Aconitase family (aconitate hydratase) YS110_04275 PF00694 Aconitase C-terminal domain YS110_04280 PF00285 Citrate synthase, C-terminal domain YS110_04290 PF01381 Helix-turn-helix YS110_04290 PF09856 Predicted transcriptional regulator (DUF2083) YS110_04290 PF06114 IrrE N-terminal-like domain YS110_04325 PF13005 zinc-finger binding domain of transposase IS66 YS110_04325 PF03050 Transposase IS66 family YS110_04325 PF13817 IS66 C-terminal element YS110_04325 PF13007 Transposase C of IS166 homeodomain YS110_04355 PF01548 Transposase YS110_04355 PF02371 Transposase IS116/IS110/IS902 family YS110_04360 PF09346 SMI1 / KNR4 family (SUKH-1) YS110_04380 PF00041 Fibronectin type III domain YS110_04380 PF03423 Carbohydrate binding domain (family 25) YS110_04380 PF03065 Glycosyl hydrolase family 57 YS110_04400 PF00849 RNA pseudouridylate synthase YS110_04410 PF08411 Exonuclease C-terminal YS110_04410 PF00929 Exonuclease YS110_04430 PF07715 TonB-dependent Receptor Plug Domain YS110_04430 PF00593 TonB dependent receptor YS110_04435 PF13406 Transglycosylase SLT domain YS110_04460 PF00004 ATPase family associated with various cellular activities (AAA) YS110_04460 PF17871 AAA lid domain YS110_04460 PF02861 Clp amino terminal domain, pathogenicity island component YS110_04460 PF07724 AAA domain (Cdc48 subfamily) YS110_04460 PF10431 C-terminal, D2-small domain, of ClpB protein YS110_04465 PF02617 ATP-dependent Clp protease adaptor protein ClpS YS110_04470 PF01336 OB-fold nucleic acid binding domain YS110_04470 PF02811 PHP domain YS110_04470 PF14579 Helix-hairpin-helix motif YS110_04470 PF17657 Bacterial DNA polymerase III alpha subunit finger domain YS110_04470 PF07733 Bacterial DNA polymerase III alpha NTPase domain YS110_04475 PF13525 Outer membrane lipoprotein YS110_04495 PF01144 Coenzyme A transferase YS110_04500 PF01144 Coenzyme A transferase YS110_04515 PF02646 RmuC family YS110_04520 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain YS110_04520 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain YS110_04530 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain YS110_04530 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family YS110_04540 PF09361 Phasin protein YS110_04545 PF03588 Leucyl/phenylalanyl-tRNA protein transferase YS110_04550 PF04376 Arginine-tRNA-protein transferase, N terminus YS110_04550 PF04377 Arginine-tRNA-protein transferase, C terminus YS110_04555 PF01614 Bacterial transcriptional regulator YS110_04555 PF09339 IclR helix-turn-helix domain YS110_04560 PF00296 Luciferase-like monooxygenase YS110_04565 PF02771 Acyl-CoA dehydrogenase, N-terminal domain YS110_04565 PF02770 Acyl-CoA dehydrogenase, middle domain YS110_04565 PF08028 Acyl-CoA dehydrogenase, C-terminal domain YS110_04570 PF08028 Acyl-CoA dehydrogenase, C-terminal domain YS110_04570 PF02771 Acyl-CoA dehydrogenase, N-terminal domain YS110_04575 PF00528 Binding-protein-dependent transport system inner membrane component YS110_04580 PF09383 NIL domain YS110_04580 PF00005 ABC transporter YS110_04585 PF03180 NLPA lipoprotein YS110_04590 PF03180 NLPA lipoprotein YS110_04595 PF03180 NLPA lipoprotein YS110_04600 PF03480 Bacterial extracellular solute-binding protein, family 7 YS110_04605 PF13292 1-deoxy-D-xylulose-5-phosphate synthase YS110_04605 PF02779 Transketolase, pyrimidine binding domain YS110_04605 PF02780 Transketolase, C-terminal domain YS110_04610 PF00348 Polyprenyl synthetase YS110_04615 PF02609 Exonuclease VII small subunit YS110_04620 PF00355 Rieske [2Fe-2S] domain YS110_04620 PF00848 Ring hydroxylating alpha subunit (catalytic domain) YS110_04635 PF00581 Rhodanese-like domain YS110_04640 PF05247 Flagellar transcriptional activator (FlhD) YS110_04645 PF05280 Flagellar transcriptional activator (FlhC) YS110_04660 PF00311 Phosphoenolpyruvate carboxylase YS110_04665 PF03900 Porphobilinogen deaminase, C-terminal domain YS110_04665 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain YS110_04675 PF04375 HemX, putative uroporphyrinogen-III C-methyltransferase YS110_04685 PF10415 Fumarase C C-terminus YS110_04685 PF00206 Lyase YS110_04690 PF00199 Catalase YS110_04690 PF06628 Catalase-related immune-responsive YS110_04720 PF01212 Beta-eliminating lyase YS110_04730 PF02653 Branched-chain amino acid transport system / permease component YS110_04735 PF00005 ABC transporter YS110_04740 PF00324 Amino acid permease YS110_04750 PF04014 Antidote-toxin recognition MazE, bacterial antitoxin YS110_04755 PF01850 PIN domain YS110_04765 PF13193 AMP-binding enzyme C-terminal domain YS110_04765 PF00501 AMP-binding enzyme YS110_04775 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YS110_04775 PF03466 LysR substrate binding domain YS110_04780 PF01571 Aminomethyltransferase folate-binding domain YS110_04780 PF08669 Glycine cleavage T-protein C-terminal barrel domain YS110_04785 PF01597 Glycine cleavage H-protein YS110_04790 PF02347 Glycine cleavage system P-protein YS110_04795 PF13495 Phage integrase, N-terminal SAM-like domain YS110_04795 PF00589 Phage integrase family YS110_04835 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase YS110_04835 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase YS110_04840 PF13411 MerR HTH family regulatory protein YS110_04845 PF01757 Acyltransferase family YS110_04855 PF17657 Bacterial DNA polymerase III alpha subunit finger domain YS110_04855 PF02811 PHP domain YS110_04855 PF14579 Helix-hairpin-helix motif YS110_04855 PF07733 Bacterial DNA polymerase III alpha NTPase domain YS110_04895 PF01381 Helix-turn-helix YS110_04975 PF00216 Bacterial DNA-binding protein YS110_04985 PF00271 Helicase conserved C-terminal domain YS110_04995 PF01844 HNH endonuclease YS110_05010 PF03743 Bacterial conjugation TrbI-like protein YS110_05015 PF03524 Conjugal transfer protein YS110_05025 PF04610 TrbL/VirB6 plasmid conjugal transfer protein YS110_05040 PF03135 CagE, TrbE, VirB family, component of type IV transporter system YS110_05055 PF00437 Type II/IV secretion system protein YS110_05065 PF02534 Type IV secretory system Conjugative DNA transfer YS110_05070 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YS110_05070 PF03466 LysR substrate binding domain YS110_05080 PF02492 CobW/HypB/UreG, nucleotide-binding domain YS110_05080 PF07683 Cobalamin synthesis protein cobW C-terminal domain YS110_05100 PF05378 Hydantoinase/oxoprolinase N-terminal region YS110_05100 PF01968 Hydantoinase/oxoprolinase YS110_05105 PF08882 Acetone carboxylase gamma subunit YS110_05110 PF05378 Hydantoinase/oxoprolinase N-terminal region YS110_05110 PF01968 Hydantoinase/oxoprolinase YS110_05115 PF02954 Bacterial regulatory protein, Fis family YS110_05115 PF13426 PAS domain YS110_05115 PF00158 Sigma-54 interaction domain YS110_05120 PF08240 Alcohol dehydrogenase GroES-like domain YS110_05120 PF00107 Zinc-binding dehydrogenase YS110_05130 PF10502 Signal peptidase, peptidase S26 YS110_05145 PF13614 AAA domain YS110_05170 PF01381 Helix-turn-helix YS110_05180 PF05284 Protein of unknown function (DUF736) YS110_05190 PF17762 HTH domain found in ParB protein YS110_05190 PF02195 ParB-like nuclease domain YS110_05195 PF06067 Domain of unknown function (DUF932) YS110_05235 PF00270 DEAD/DEAH box helicase YS110_05235 PF00271 Helicase conserved C-terminal domain YS110_05240 PF13356 Arm DNA-binding domain YS110_05240 PF00589 Phage integrase family YS110_05250 PF13419 Haloacid dehalogenase-like hydrolase YS110_05265 PF00899 ThiF family YS110_05275 PF00691 OmpA family YS110_05280 PF04052 TolB amino-terminal domain YS110_05280 PF07676 WD40-like Beta Propeller Repeat YS110_05285 PF00005 ABC transporter YS110_05285 PF00664 ABC transporter transmembrane region YS110_05295 PF01026 TatD related DNase YS110_05305 PF09115 DNA polymerase III, delta subunit, C terminal YS110_05310 PF02223 Thymidylate kinase YS110_05315 PF02618 YceG-like family YS110_05320 PF01571 Aminomethyltransferase folate-binding domain YS110_05325 PF00593 TonB dependent receptor YS110_05325 PF07660 Secretin and TonB N terminus short domain YS110_05325 PF07715 TonB-dependent Receptor Plug Domain YS110_05340 PF00999 Sodium/hydrogen exchanger family YS110_05350 PF07859 alpha/beta hydrolase fold YS110_05360 PF00465 Iron-containing alcohol dehydrogenase YS110_05365 PF08668 HDOD domain YS110_05370 PF09371 Tex-like protein N-terminal domain YS110_05370 PF00575 S1 RNA binding domain YS110_05370 PF16921 Tex protein YqgF-like domain YS110_05370 PF17674 HHH domain YS110_05395 PF00106 short chain dehydrogenase YS110_05400 PF16884 N-terminal domain of oxidoreductase YS110_05400 PF00107 Zinc-binding dehydrogenase YS110_05415 PF02770 Acyl-CoA dehydrogenase, middle domain YS110_05415 PF12806 Acetyl-CoA dehydrogenase C-terminal like YS110_05415 PF00441 Acyl-CoA dehydrogenase, C-terminal domain YS110_05415 PF02771 Acyl-CoA dehydrogenase, N-terminal domain YS110_05420 PF00892 EamA-like transporter family YS110_05425 PF00724 NADH:flavin oxidoreductase / NADH oxidase family YS110_05425 PF07992 Pyridine nucleotide-disulphide oxidoreductase YS110_05470 PF11940 Domain of unknown function (DUF3458) Ig-like fold YS110_05470 PF17432 Domain of unknown function (DUF3458_C) ARM repeats YS110_05470 PF01433 Peptidase family M1 domain YS110_05475 PF00316 Fructose-1-6-bisphosphatase, N-terminal domain YS110_05480 PF03707 Bacterial signalling protein N terminal repeat YS110_05480 PF00990 Diguanylate cyclase, GGDEF domain YS110_05480 PF00563 EAL domain YS110_05485 PF00919 Uncharacterized protein family UPF0004 YS110_05485 PF18693 TRAM domain YS110_05485 PF04055 Radical SAM superfamily YS110_05490 PF12168 DNA polymerase III subunits tau domain IV DnaB-binding YS110_05490 PF12169 DNA polymerase III subunits gamma and tau domain III YS110_05490 PF12170 DNA polymerase III tau subunit V interacting with alpha YS110_05495 PF02575 YbaB/EbfC DNA-binding family YS110_05500 PF02132 RecR protein YS110_05500 PF13662 Toprim domain YS110_05510 PF01476 LysM domain YS110_05510 PF01464 Transglycosylase SLT domain YS110_05515 PF16123 Hydroxyacylglutathione hydrolase C-terminus YS110_05515 PF00753 Metallo-beta-lactamase superfamily YS110_05520 PF01209 ubiE/COQ5 methyltransferase family YS110_05525 PF00075 RNase H YS110_05530 PF00701 Dihydrodipicolinate synthetase family YS110_05535 PF06804 NlpB/DapX lipoprotein YS110_05550 PF08007 Cupin superfamily protein YS110_05555 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase YS110_05565 PF00563 EAL domain YS110_05565 PF00990 Diguanylate cyclase, GGDEF domain YS110_05565 PF03707 Bacterial signalling protein N terminal repeat YS110_05570 PF02321 Outer membrane efflux protein YS110_05575 PF00873 AcrB/AcrD/AcrF family YS110_05580 PF00873 AcrB/AcrD/AcrF family YS110_05585 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion YS110_05590 PF03459 TOBE domain YS110_05590 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YS110_05600 PF00528 Binding-protein-dependent transport system inner membrane component YS110_05605 PF00005 ABC transporter YS110_05605 PF03459 TOBE domain YS110_05615 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component YS110_05620 PF00296 Luciferase-like monooxygenase YS110_05630 PF17876 Cold shock domain YS110_05630 PF00773 RNB domain YS110_05630 PF08461 Ribonuclease R winged-helix domain YS110_05630 PF08206 Ribonuclease B OB domain YS110_05630 PF00575 S1 RNA binding domain YS110_05655 PF11873 Membrane-bound lytic murein transglycosylase C, N-terminal domain YS110_05655 PF01464 Transglycosylase SLT domain YS110_05660 PF00464 Serine hydroxymethyltransferase YS110_05665 PF03477 ATP cone domain YS110_05670 PF00149 Calcineurin-like phosphoesterase YS110_05675 PF01264 Chorismate synthase YS110_05685 PF01053 Cys/Met metabolism PLP-dependent enzyme YS110_05690 PF00561 alpha/beta hydrolase fold YS110_05695 PF03631 Virulence factor BrkB YS110_05705 PF01565 FAD binding domain YS110_05705 PF02913 FAD linked oxidases, C-terminal domain YS110_05710 PF07715 TonB-dependent Receptor Plug Domain YS110_05710 PF00593 TonB dependent receptor YS110_05720 PF01850 PIN domain YS110_05730 PF02371 Transposase IS116/IS110/IS902 family YS110_05730 PF01548 Transposase YS110_05735 PF04542 Sigma-70 region 2 YS110_05735 PF08281 Sigma-70, region 4 YS110_05740 PF00303 Thymidylate synthase YS110_05750 PF00186 Dihydrofolate reductase YS110_05775 PF02803 Thiolase, C-terminal domain YS110_05775 PF00108 Thiolase, N-terminal domain YS110_05810 PF00749 tRNA synthetases class I (E and Q), catalytic domain YS110_05815 PF01053 Cys/Met metabolism PLP-dependent enzyme YS110_05820 PF00156 Phosphoribosyl transferase domain YS110_05835 PF08245 Mur ligase middle domain YS110_05835 PF02875 Mur ligase family, glutamate ligase domain YS110_05840 PF03960 ArsC family YS110_05850 PF06865 Pyrimidine/purine nucleoside phosphorylase YS110_05855 PF00764 Arginosuccinate synthase YS110_05860 PF02592 Putative vitamin uptake transporter YS110_05870 PF04542 Sigma-70 region 2 YS110_05870 PF12680 SnoaL-like domain YS110_05870 PF08281 Sigma-70, region 4 YS110_05875 PF02627 Carboxymuconolactone decarboxylase family YS110_05880 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YS110_05880 PF03466 LysR substrate binding domain YS110_05905 PF07715 TonB-dependent Receptor Plug Domain YS110_05905 PF07660 Secretin and TonB N terminus short domain YS110_05905 PF00593 TonB dependent receptor YS110_05910 PF04773 FecR protein YS110_05910 PF16220 Domain of unknown function (DUF4880) YS110_05915 PF08281 Sigma-70, region 4 YS110_05915 PF04542 Sigma-70 region 2 YS110_05920 PF01565 FAD binding domain YS110_05920 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain YS110_05925 PF04461 Protein of unknown function (DUF520) YS110_05940 PF02660 Glycerol-3-phosphate acyltransferase YS110_05945 PF00990 Diguanylate cyclase, GGDEF domain YS110_05960 PF13443 Cro/C1-type HTH DNA-binding domain YS110_05970 PF00248 Aldo/keto reductase family YS110_05975 PF00561 alpha/beta hydrolase fold YS110_06005 PF13614 AAA domain YS110_06060 PF01751 Toprim domain YS110_06060 PF01131 DNA topoisomerase YS110_06120 PF08267 Cobalamin-independent synthase, N-terminal domain YS110_06120 PF01717 Cobalamin-independent synthase, Catalytic domain YS110_06135 PF01048 Phosphorylase superfamily YS110_06170 PF02899 Phage integrase, N-terminal SAM-like domain YS110_06170 PF00589 Phage integrase family YS110_06350 PF01548 Transposase YS110_06350 PF02371 Transposase IS116/IS110/IS902 family YS110_06395 PF00528 Binding-protein-dependent transport system inner membrane component YS110_06400 PF00005 ABC transporter YS110_06410 PF01551 Peptidase family M23 YS110_06410 PF10145 Phage-related minor tail protein YS110_06410 PF01464 Transglycosylase SLT domain YS110_06420 PF00482 Type II secretion system (T2SS), protein F YS110_06425 PF00437 Type II/IV secretion system protein YS110_06430 PF00263 Bacterial type II and III secretion system protein YS110_06430 PF03958 Bacterial type II/III secretion system short domain YS110_06465 PF07963 Prokaryotic N-terminal methylation motif YS110_06465 PF02501 Type II secretion system (T2SS), protein I YS110_06470 PF07963 Prokaryotic N-terminal methylation motif YS110_06470 PF12019 Type II transport protein GspH YS110_06475 PF07963 Prokaryotic N-terminal methylation motif YS110_06475 PF08334 Type II secretion system (T2SS), protein G YS110_06565 PF13175 AAA ATPase domain YS110_06570 PF13361 UvrD-like helicase C-terminal domain YS110_06570 PF00580 UvrD/REP helicase N-terminal domain YS110_06570 PF00570 HRDC domain YS110_06575 PF01475 Ferric uptake regulator family YS110_06580 PF00216 Bacterial DNA-binding protein YS110_06595 PF13411 MerR HTH family regulatory protein YS110_06600 PF00216 Bacterial DNA-binding protein YS110_06605 PF03483 B3/4 domain YS110_06605 PF03484 tRNA synthetase B5 domain YS110_06605 PF03147 Ferredoxin-fold anticodon binding domain YS110_06605 PF01588 Putative tRNA binding domain YS110_06605 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain YS110_06610 PF01409 tRNA synthetases class II core domain (F) YS110_06610 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain YS110_06615 PF00453 Ribosomal protein L20 YS110_06620 PF01632 Ribosomal protein L35 YS110_06625 PF00707 Translation initiation factor IF-3, C-terminal domain YS110_06625 PF05198 Translation initiation factor IF-3, N-terminal domain YS110_06630 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain YS110_06630 PF03129 Anticodon binding domain YS110_06630 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) YS110_06630 PF02824 TGS domain YS110_06635 PF00463 Isocitrate lyase family YS110_06645 PF03737 Aldolase/RraA YS110_06665 PF01618 MotA/TolQ/ExbB proton channel family YS110_06670 PF02472 Biopolymer transport protein ExbD/TolR YS110_06680 PF03471 Transporter associated domain YS110_06680 PF03741 Integral membrane protein TerC family YS110_06685 PF00009 Elongation factor Tu GTP binding domain YS110_06685 PF03144 Elongation factor Tu domain 2 YS110_06685 PF00679 Elongation factor G C-terminus YS110_06690 PF16198 tRNA pseudouridylate synthase B C-terminal domain YS110_06690 PF01509 TruB family pseudouridylate synthase (N terminal domain) YS110_06695 PF02033 Ribosome-binding factor A YS110_06700 PF04760 Translation initiation factor IF-2, N-terminal region YS110_06700 PF08364 Bacterial translation initiation factor IF-2 associated region YS110_06700 PF11987 Translation-initiation factor 2 YS110_06700 PF00009 Elongation factor Tu GTP binding domain YS110_06705 PF13184 NusA-like KH domain YS110_06705 PF00575 S1 RNA binding domain YS110_06705 PF08529 NusA N-terminal domain YS110_06710 PF02576 RimP N-terminal domain YS110_06720 PF07715 TonB-dependent Receptor Plug Domain YS110_06720 PF00593 TonB dependent receptor YS110_06730 PF10415 Fumarase C C-terminus YS110_06730 PF00206 Lyase YS110_06735 PF04545 Sigma-70, region 4 YS110_06735 PF04542 Sigma-70 region 2 YS110_06740 PF07715 TonB-dependent Receptor Plug Domain YS110_06740 PF00593 TonB dependent receptor YS110_06740 PF07660 Secretin and TonB N terminus short domain YS110_06755 PF00005 ABC transporter YS110_06755 PF08352 Oligopeptide/dipeptide transporter, C-terminal region YS110_06760 PF00528 Binding-protein-dependent transport system inner membrane component YS110_06760 PF12911 N-terminal TM domain of oligopeptide transport permease C YS110_06785 PF00528 Binding-protein-dependent transport system inner membrane component YS110_06795 PF03707 Bacterial signalling protein N terminal repeat YS110_06795 PF00990 Diguanylate cyclase, GGDEF domain YS110_06795 PF00563 EAL domain YS110_06800 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle YS110_06805 PF01774 UreD urease accessory protein YS110_06815 PF02653 Branched-chain amino acid transport system / permease component YS110_06825 PF12399 Branched-chain amino acid ATP-binding cassette transporter YS110_06825 PF00005 ABC transporter YS110_06830 PF00005 ABC transporter YS110_06835 PF00072 Response regulator receiver domain YS110_06840 PF00497 Bacterial extracellular solute-binding proteins, family 3 YS110_06840 PF00072 Response regulator receiver domain YS110_06840 PF00989 PAS fold YS110_06840 PF01627 Hpt domain YS110_06840 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YS110_06840 PF00512 His Kinase A (phospho-acceptor) domain YS110_06845 PF00547 Urease, gamma subunit YS110_06855 PF00699 Urease beta subunit YS110_06860 PF00449 Urease alpha-subunit, N-terminal domain YS110_06860 PF01979 Amidohydrolase family YS110_06865 PF02814 UreE urease accessory protein, N-terminal domain YS110_06865 PF05194 UreE urease accessory protein, C-terminal domain YS110_06870 PF01730 UreF YS110_06875 PF02492 CobW/HypB/UreG, nucleotide-binding domain YS110_06885 PF04325 Protein of unknown function (DUF465) YS110_06890 PF14743 DNA ligase OB-like domain YS110_06890 PF01068 ATP dependent DNA ligase domain YS110_06895 PF01276 Orn/Lys/Arg decarboxylase, major domain YS110_06895 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain YS110_06895 PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain YS110_06905 PF01145 SPFH domain / Band 7 family YS110_06915 PF06463 Molybdenum Cofactor Synthesis C YS110_06915 PF04055 Radical SAM superfamily YS110_06920 PF12804 MobA-like NTP transferase domain YS110_06930 PF03453 MoeA N-terminal region (domain I and II) YS110_06930 PF00994 Probable molybdopterin binding domain YS110_06930 PF03454 MoeA C-terminal region (domain IV) YS110_06940 PF01037 Lrp/AsnC ligand binding domain YS110_06945 PF00892 EamA-like transporter family YS110_06950 PF01548 Transposase YS110_06950 PF02371 Transposase IS116/IS110/IS902 family YS110_06955 PF01609 Transposase DDE domain YS110_06955 PF05598 Transposase domain (DUF772) YS110_06960 PF01548 Transposase YS110_06960 PF02371 Transposase IS116/IS110/IS902 family YS110_06975 PF03788 LrgA family YS110_06985 PF00155 Aminotransferase class I and II YS110_06985 PF00392 Bacterial regulatory proteins, gntR family YS110_06990 PF01654 Cytochrome bd terminal oxidase subunit I YS110_06995 PF02322 Cytochrome bd terminal oxidase subunit II YS110_07005 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain YS110_07005 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain YS110_07010 PF02572 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP YS110_07010 PF12557 Cob(I)alamin adenosyltransferase N terminal YS110_07025 PF09345 Domain of unknown function (DUF1987) YS110_07030 PF00990 Diguanylate cyclase, GGDEF domain YS110_07035 PF00990 Diguanylate cyclase, GGDEF domain YS110_07035 PF03707 Bacterial signalling protein N terminal repeat YS110_07035 PF00563 EAL domain YS110_07040 PF00005 ABC transporter YS110_07045 PF01032 FecCD transport family YS110_07050 PF01497 Periplasmic binding protein YS110_07055 PF02283 Cobinamide kinase / cobinamide phosphate guanyltransferase YS110_07060 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain YS110_07060 PF07685 CobB/CobQ-like glutamine amidotransferase domain YS110_07065 PF07715 TonB-dependent Receptor Plug Domain YS110_07065 PF00593 TonB dependent receptor YS110_07080 PF01925 Sulfite exporter TauE/SafE YS110_07085 PF03707 Bacterial signalling protein N terminal repeat YS110_07085 PF00563 EAL domain YS110_07085 PF00990 Diguanylate cyclase, GGDEF domain YS110_07090 PF00072 Response regulator receiver domain YS110_07100 PF06969 HemN C-terminal domain YS110_07100 PF04055 Radical SAM superfamily YS110_07105 PF13545 Crp-like helix-turn-helix domain YS110_07105 PF00027 Cyclic nucleotide-binding domain YS110_07115 PF11614 IG-like fold at C-terminal of FixG, putative oxidoreductase YS110_07115 PF12801 4Fe-4S binding domain YS110_07115 PF13746 4Fe-4S dicluster domain YS110_07120 PF14715 N-terminal domain of cytochrome oxidase-cbb3, FixP YS110_07120 PF13442 Cytochrome C oxidase, cbb3-type, subunit III YS110_07135 PF00115 Cytochrome C and Quinol oxidase polypeptide I YS110_07145 PF00403 Heavy-metal-associated domain YS110_07160 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain YS110_07160 PF00749 tRNA synthetases class I (E and Q), catalytic domain YS110_07180 PF00849 RNA pseudouridylate synthase YS110_07185 PF00565 Staphylococcal nuclease homologue YS110_07190 PF00849 RNA pseudouridylate synthase YS110_07195 PF01926 50S ribosome-binding GTPase YS110_07205 PF00672 HAMP domain YS110_07205 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YS110_07205 PF00512 His Kinase A (phospho-acceptor) domain YS110_07210 PF12805 FUSC-like inner membrane protein yccS YS110_07215 PF04262 Glutamate-cysteine ligase YS110_07220 PF00106 short chain dehydrogenase YS110_07225 PF01063 Amino-transferase class IV YS110_07230 PF00111 2Fe-2S iron-sulfur cluster binding domain YS110_07230 PF00970 Oxidoreductase FAD-binding domain YS110_07235 PF01548 Transposase YS110_07235 PF02371 Transposase IS116/IS110/IS902 family YS110_07240 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase YS110_07240 PF00925 GTP cyclohydrolase II YS110_07245 PF00885 6,7-dimethyl-8-ribityllumazine synthase YS110_07250 PF01029 NusB family YS110_07255 PF00155 Aminotransferase class I and II YS110_07260 PF03061 Thioesterase superfamily YS110_07265 PF01618 MotA/TolQ/ExbB proton channel family YS110_07270 PF02472 Biopolymer transport protein ExbD/TolR YS110_07280 PF07690 Major Facilitator Superfamily YS110_07280 PF00083 Sugar (and other) transporter YS110_07285 PF06481 COX Aromatic Rich Motif YS110_07285 PF00116 Cytochrome C oxidase subunit II, periplasmic domain YS110_07290 PF00115 Cytochrome C and Quinol oxidase polypeptide I YS110_07295 PF00510 Cytochrome c oxidase subunit III YS110_07300 PF03626 Prokaryotic Cytochrome C oxidase subunit IV YS110_07310 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YS110_07310 PF00512 His Kinase A (phospho-acceptor) domain YS110_07315 PF00072 Response regulator receiver domain YS110_07330 PF08281 Sigma-70, region 4 YS110_07330 PF04542 Sigma-70 region 2 YS110_07335 PF04773 FecR protein YS110_07335 PF16220 Domain of unknown function (DUF4880) YS110_07350 PF00593 TonB dependent receptor YS110_07350 PF07715 TonB-dependent Receptor Plug Domain YS110_07350 PF07660 Secretin and TonB N terminus short domain YS110_07355 PF01136 Peptidase family U32 YS110_07355 PF16325 Peptidase family U32 C-terminal domain YS110_07360 PF00106 short chain dehydrogenase YS110_07365 PF00378 Enoyl-CoA hydratase/isomerase YS110_07370 PF02771 Acyl-CoA dehydrogenase, N-terminal domain YS110_07370 PF02770 Acyl-CoA dehydrogenase, middle domain YS110_07370 PF00441 Acyl-CoA dehydrogenase, C-terminal domain YS110_07375 PF00441 Acyl-CoA dehydrogenase, C-terminal domain YS110_07375 PF02770 Acyl-CoA dehydrogenase, middle domain YS110_07375 PF02771 Acyl-CoA dehydrogenase, N-terminal domain YS110_07380 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain YS110_07380 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain YS110_07380 PF00378 Enoyl-CoA hydratase/isomerase YS110_07385 PF02803 Thiolase, C-terminal domain YS110_07385 PF00108 Thiolase, N-terminal domain YS110_07395 PF12802 MarR family YS110_07400 PF00441 Acyl-CoA dehydrogenase, C-terminal domain YS110_07400 PF02770 Acyl-CoA dehydrogenase, middle domain YS110_07400 PF02771 Acyl-CoA dehydrogenase, N-terminal domain YS110_07405 PF00501 AMP-binding enzyme YS110_07405 PF13193 AMP-binding enzyme C-terminal domain YS110_07410 PF00378 Enoyl-CoA hydratase/isomerase YS110_07425 PF00005 ABC transporter YS110_07425 PF12399 Branched-chain amino acid ATP-binding cassette transporter YS110_07430 PF00005 ABC transporter YS110_07435 PF13458 Periplasmic binding protein YS110_07440 PF13609 Gram-negative porin YS110_07445 PF08240 Alcohol dehydrogenase GroES-like domain YS110_07445 PF00107 Zinc-binding dehydrogenase YS110_07450 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YS110_07450 PF03466 LysR substrate binding domain YS110_07460 PF13193 AMP-binding enzyme C-terminal domain YS110_07460 PF00501 AMP-binding enzyme YS110_07465 PF00378 Enoyl-CoA hydratase/isomerase YS110_07475 PF01790 Prolipoprotein diacylglyceryl transferase YS110_07480 PF00210 Ferritin-like domain YS110_07485 PF00258 Flavodoxin YS110_07490 PF00920 Dehydratase family YS110_07500 PF00034 Cytochrome c YS110_07505 PF13193 AMP-binding enzyme C-terminal domain YS110_07505 PF00501 AMP-binding enzyme YS110_07505 PF16177 Acetyl-coenzyme A synthetase N-terminus YS110_07510 PF00005 ABC transporter YS110_07510 PF00571 CBS domain YS110_07515 PF00528 Binding-protein-dependent transport system inner membrane component YS110_07520 PF04069 Substrate binding domain of ABC-type glycine betaine transport system YS110_07530 PF02694 Uncharacterised BCR, YnfA/UPF0060 family YS110_07550 PF13533 Biotin-lipoyl like YS110_07560 PF00115 Cytochrome C and Quinol oxidase polypeptide I YS110_07585 PF07730 Histidine kinase YS110_07585 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YS110_07585 PF00672 HAMP domain YS110_07590 PF00072 Response regulator receiver domain YS110_07590 PF00196 Bacterial regulatory proteins, luxR family YS110_07600 PF00561 alpha/beta hydrolase fold YS110_07610 PF18317 Shikimate 5'-dehydrogenase C-terminal domain YS110_07610 PF01488 Shikimate / quinate 5-dehydrogenase YS110_07610 PF08501 Shikimate dehydrogenase substrate binding domain YS110_07615 PF00171 Aldehyde dehydrogenase family YS110_07625 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain YS110_07625 PF07992 Pyridine nucleotide-disulphide oxidoreductase YS110_07630 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) YS110_07630 PF00364 Biotin-requiring enzyme YS110_07630 PF02817 e3 binding domain YS110_07640 PF00676 Dehydrogenase E1 component YS110_07650 PF00005 ABC transporter YS110_07655 PF00005 ABC transporter YS110_07655 PF12399 Branched-chain amino acid ATP-binding cassette transporter YS110_07665 PF02653 Branched-chain amino acid transport system / permease component YS110_07670 PF13458 Periplasmic binding protein YS110_07675 PF07729 FCD domain YS110_07675 PF00392 Bacterial regulatory proteins, gntR family YS110_07685 PF10458 Valyl tRNA synthetase tRNA binding arm YS110_07685 PF00133 tRNA synthetases class I (I, L, M and V) YS110_07685 PF08264 Anticodon-binding domain of tRNA YS110_07690 PF00483 Nucleotidyl transferase YS110_07710 PF02146 Sir2 family YS110_07745 PF01206 Sulfurtransferase TusA YS110_07750 PF00293 NUDIX domain YS110_07750 PF09296 NADH pyrophosphatase-like rudimentary NUDIX domain YS110_07750 PF09297 NADH pyrophosphatase zinc ribbon domain YS110_07755 PF00291 Pyridoxal-phosphate dependent enzyme YS110_07770 PF03441 FAD binding domain of DNA photolyase YS110_07770 PF00875 DNA photolyase YS110_07775 PF02798 Glutathione S-transferase, N-terminal domain YS110_07780 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YS110_07780 PF03466 LysR substrate binding domain YS110_07785 PF02770 Acyl-CoA dehydrogenase, middle domain YS110_07785 PF00441 Acyl-CoA dehydrogenase, C-terminal domain YS110_07785 PF02771 Acyl-CoA dehydrogenase, N-terminal domain YS110_07790 PF02515 CoA-transferase family III YS110_07805 PF00990 Diguanylate cyclase, GGDEF domain YS110_07805 PF03707 Bacterial signalling protein N terminal repeat YS110_07805 PF00563 EAL domain YS110_07810 PF00497 Bacterial extracellular solute-binding proteins, family 3 YS110_07815 PF00072 Response regulator receiver domain YS110_07820 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) YS110_07820 PF00512 His Kinase A (phospho-acceptor) domain YS110_07820 PF01627 Hpt domain YS110_07820 PF00672 HAMP domain YS110_07820 PF00072 Response regulator receiver domain YS110_07820 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YS110_07825 PF00563 EAL domain YS110_07825 PF03707 Bacterial signalling protein N terminal repeat YS110_07825 PF00990 Diguanylate cyclase, GGDEF domain YS110_07830 PF00488 MutS domain V YS110_07830 PF01624 MutS domain I YS110_07830 PF05188 MutS domain II YS110_07830 PF05192 MutS domain III YS110_07830 PF05190 MutS family domain IV YS110_07835 PF00672 HAMP domain YS110_07835 PF17200 Single Cache domain 2 YS110_07835 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain YS110_07850 PF00563 EAL domain YS110_07850 PF08448 PAS fold YS110_07850 PF08447 PAS fold YS110_07850 PF00990 Diguanylate cyclase, GGDEF domain YS110_07855 PF02673 Bacitracin resistance protein BacA YS110_07860 PF07694 5TMR of 5TMR-LYT YS110_07860 PF06580 Histidine kinase YS110_07865 PF04397 LytTr DNA-binding domain YS110_07865 PF00072 Response regulator receiver domain YS110_07895 PF00553 Cellulose binding domain YS110_07895 PF00759 Glycosyl hydrolase family 9 YS110_07895 PF00942 Cellulose binding domain YS110_07895 PF00041 Fibronectin type III domain YS110_07900 PF12833 Helix-turn-helix domain YS110_07935 PF03435 Saccharopine dehydrogenase NADP binding domain YS110_07955 PF00005 ABC transporter YS110_07965 PF00692 dUTPase YS110_07970 PF02441 Flavoprotein YS110_07970 PF04127 DNA / pantothenate metabolism flavoprotein YS110_07975 PF00117 Glutamine amidotransferase class-I YS110_07975 PF06418 CTP synthase N-terminus YS110_07980 PF00793 DAHP synthetase I family YS110_07985 PF03952 Enolase, N-terminal domain YS110_07985 PF00113 Enolase, C-terminal TIM barrel domain YS110_07990 PF04977 Septum formation initiator YS110_07995 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain YS110_07995 PF00364 Biotin-requiring enzyme YS110_07995 PF00289 Biotin carboxylase, N-terminal domain YS110_07995 PF02785 Biotin carboxylase C-terminal domain YS110_08005 PF03746 LamB/YcsF family YS110_08010 PF00557 Metallopeptidase family M24 YS110_08020 PF00005 ABC transporter YS110_08025 PF00528 Binding-protein-dependent transport system inner membrane component YS110_08030 PF00528 Binding-protein-dependent transport system inner membrane component YS110_08035 PF00497 Bacterial extracellular solute-binding proteins, family 3 YS110_08050 PF07660 Secretin and TonB N terminus short domain YS110_08050 PF07715 TonB-dependent Receptor Plug Domain YS110_08050 PF00593 TonB dependent receptor YS110_08055 PF01430 Hsp33 protein YS110_08060 PF00132 Bacterial transferase hexapeptide (six repeats) YS110_08065 PF04305 Protein of unknown function (DUF455) YS110_08070 PF00563 EAL domain YS110_08070 PF08668 HDOD domain YS110_08075 PF00563 EAL domain YS110_08075 PF08668 HDOD domain YS110_08080 PF02899 Phage integrase, N-terminal SAM-like domain YS110_08080 PF00589 Phage integrase family YS110_08085 PF02129 X-Pro dipeptidyl-peptidase (S15 family) YS110_08085 PF08530 X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain YS110_08095 PF00990 Diguanylate cyclase, GGDEF domain YS110_08105 PF08331 Domain of unknown function (DUF1730) YS110_08110 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE YS110_08115 PF11741 AMIN domain YS110_08115 PF01520 N-acetylmuramoyl-L-alanine amidase YS110_08120 PF05552 Conserved TM helix YS110_08120 PF00924 Mechanosensitive ion channel YS110_08130 PF09335 SNARE associated Golgi protein YS110_08135 PF01119 DNA mismatch repair protein, C-terminal domain YS110_08135 PF08676 MutL C terminal dimerisation domain YS110_08140 PF00072 Response regulator receiver domain YS110_08140 PF00486 Transcriptional regulatory protein, C terminal YS110_08145 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YS110_08145 PF00512 His Kinase A (phospho-acceptor) domain YS110_08160 PF00873 AcrB/AcrD/AcrF family YS110_08170 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase YS110_08170 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain YS110_08185 PF02653 Branched-chain amino acid transport system / permease component YS110_08200 PF00005 ABC transporter YS110_08205 PF00005 ABC transporter YS110_08205 PF12399 Branched-chain amino acid ATP-binding cassette transporter YS110_08220 PF00361 Proton-conducting membrane transporter YS110_08225 PF00361 Proton-conducting membrane transporter YS110_08225 PF01059 NADH-ubiquinone oxidoreductase chain 4, amino terminus YS110_08230 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus YS110_08230 PF00361 Proton-conducting membrane transporter YS110_08235 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L YS110_08240 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 YS110_08245 PF12838 4Fe-4S dicluster domain YS110_08250 PF00146 NADH dehydrogenase YS110_08255 PF00384 Molybdopterin oxidoreductase YS110_08255 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region YS110_08255 PF09326 NADH-ubiquinone oxidoreductase subunit G, C-terminal YS110_08260 PF10531 SLBB domain YS110_08260 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit YS110_08260 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region YS110_08270 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit YS110_08275 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit YS110_08280 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit YS110_08285 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 YS110_08295 PF03840 Preprotein translocase SecG subunit YS110_08300 PF00121 Triosephosphate isomerase YS110_08305 PF00107 Zinc-binding dehydrogenase YS110_08305 PF08240 Alcohol dehydrogenase GroES-like domain YS110_08310 PF01138 3' exoribonuclease family, domain 1 YS110_08310 PF00575 S1 RNA binding domain YS110_08310 PF00013 KH domain YS110_08310 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain YS110_08310 PF03725 3' exoribonuclease family, domain 2 YS110_08315 PF00312 Ribosomal protein S15 YS110_08320 PF01458 Uncharacterized protein family (UPF0051) YS110_08325 PF00005 ABC transporter YS110_08335 PF00266 Aminotransferase class-V YS110_08340 PF01592 NifU-like N terminal domain YS110_08345 PF01883 Iron-sulfur cluster assembly protein YS110_08365 PF07963 Prokaryotic N-terminal methylation motif YS110_08365 PF00114 Pilin (bacterial filament) YS110_08370 PF00114 Pilin (bacterial filament) YS110_08370 PF07963 Prokaryotic N-terminal methylation motif YS110_08390 PF05567 Neisseria PilC beta-propeller domain YS110_08395 PF16732 Type IV minor pilin ComP, DNA uptake sequence receptor YS110_08395 PF07963 Prokaryotic N-terminal methylation motif YS110_08400 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region YS110_08400 PF01872 RibD C-terminal domain YS110_08405 PF00581 Rhodanese-like domain YS110_08410 PF01207 Dihydrouridine synthase (Dus) YS110_08430 PF00196 Bacterial regulatory proteins, luxR family YS110_08430 PF00072 Response regulator receiver domain YS110_08435 PF00072 Response regulator receiver domain YS110_08435 PF01627 Hpt domain YS110_08435 PF00512 His Kinase A (phospho-acceptor) domain YS110_08435 PF00672 HAMP domain YS110_08435 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YS110_08440 PF00171 Aldehyde dehydrogenase family YS110_08455 PF02861 Clp amino terminal domain, pathogenicity island component YS110_08455 PF07724 AAA domain (Cdc48 subfamily) YS110_08455 PF17871 AAA lid domain YS110_08455 PF10431 C-terminal, D2-small domain, of ClpB protein YS110_08455 PF00004 ATPase family associated with various cellular activities (AAA) YS110_08460 PF02391 MoaE protein YS110_08485 PF03453 MoeA N-terminal region (domain I and II) YS110_08485 PF03454 MoeA C-terminal region (domain IV) YS110_08485 PF00994 Probable molybdopterin binding domain YS110_08490 PF03205 Molybdopterin guanine dinucleotide synthesis protein B YS110_08495 PF00291 Pyridoxal-phosphate dependent enzyme YS110_08495 PF14821 Threonine synthase N terminus YS110_08500 PF01842 ACT domain YS110_08500 PF00742 Homoserine dehydrogenase YS110_08500 PF03447 Homoserine dehydrogenase, NAD binding domain YS110_08505 PF00155 Aminotransferase class I and II YS110_08515 PF00578 AhpC/TSA family YS110_08520 PF13638 PIN domain YS110_08520 PF02562 PhoH-like protein YS110_08525 PF00392 Bacterial regulatory proteins, gntR family YS110_08525 PF07840 FadR C-terminal domain YS110_08545 PF00294 pfkB family carbohydrate kinase YS110_08550 PF01026 TatD related DNase YS110_08555 PF00005 ABC transporter YS110_08560 PF02687 FtsX-like permease family YS110_08560 PF12704 MacB-like periplasmic core domain YS110_08570 PF01368 DHH family YS110_08570 PF02272 DHHA1 domain YS110_08570 PF17768 RecJ OB domain YS110_08575 PF03350 Uncharacterized protein family, UPF0114 YS110_08580 PF00672 HAMP domain YS110_08580 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain YS110_08580 PF02203 Tar ligand binding domain homologue YS110_08585 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain YS110_08585 PF02203 Tar ligand binding domain homologue YS110_08585 PF00672 HAMP domain YS110_08590 PF02811 PHP domain YS110_08595 PF01300 Telomere recombination YS110_08600 PF02163 Peptidase family M50 YS110_08605 PF00579 tRNA synthetases class I (W and Y) YS110_08610 PF00072 Response regulator receiver domain YS110_08610 PF00486 Transcriptional regulatory protein, C terminal YS110_08620 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YS110_08620 PF11808 Phosphate regulon sensor protein PhoR YS110_08620 PF00989 PAS fold YS110_08620 PF00512 His Kinase A (phospho-acceptor) domain YS110_08640 PF13847 Methyltransferase domain YS110_08705 PF03942 DTW domain YS110_08715 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) YS110_08715 PF02403 Seryl-tRNA synthetase N-terminal domain YS110_08725 PF00672 HAMP domain YS110_08725 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YS110_08725 PF00512 His Kinase A (phospho-acceptor) domain YS110_08725 PF01627 Hpt domain YS110_08725 PF00072 Response regulator receiver domain YS110_08725 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) YS110_08730 PF00497 Bacterial extracellular solute-binding proteins, family 3 YS110_08730 PF00989 PAS fold YS110_08730 PF00072 Response regulator receiver domain YS110_08730 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YS110_08730 PF00512 His Kinase A (phospho-acceptor) domain YS110_08730 PF01627 Hpt domain YS110_08740 PF11849 Domain of unknown function (DUF3369) YS110_08745 PF00486 Transcriptional regulatory protein, C terminal YS110_08745 PF00072 Response regulator receiver domain YS110_08760 PF00990 Diguanylate cyclase, GGDEF domain YS110_08760 PF00072 Response regulator receiver domain YS110_08765 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain YS110_08765 PF00672 HAMP domain YS110_08765 PF02203 Tar ligand binding domain homologue YS110_08770 PF02401 LytB protein YS110_08775 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase YS110_08780 PF04002 RadC-like JAB domain YS110_08785 PF13416 Bacterial extracellular solute-binding protein YS110_08790 PF00528 Binding-protein-dependent transport system inner membrane component YS110_08795 PF00005 ABC transporter YS110_08795 PF08402 TOBE domain YS110_08800 PF00072 Response regulator receiver domain YS110_08800 PF00486 Transcriptional regulatory protein, C terminal YS110_08805 PF00672 HAMP domain YS110_08805 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YS110_08805 PF00512 His Kinase A (phospho-acceptor) domain YS110_08815 PF09907 HigB_toxin, RelE-like toxic component of a toxin-antitoxin system YS110_08820 PF07715 TonB-dependent Receptor Plug Domain YS110_08820 PF00593 TonB dependent receptor YS110_08835 PF16220 Domain of unknown function (DUF4880) YS110_08835 PF04773 FecR protein YS110_08840 PF07660 Secretin and TonB N terminus short domain YS110_08840 PF07715 TonB-dependent Receptor Plug Domain YS110_08840 PF00593 TonB dependent receptor YS110_08845 PF01850 PIN domain YS110_08850 PF04014 Antidote-toxin recognition MazE, bacterial antitoxin YS110_08860 PF01850 PIN domain YS110_08870 PF01713 Smr domain YS110_08870 PF00488 MutS domain V YS110_08875 PF01047 MarR family YS110_08880 PF02371 Transposase IS116/IS110/IS902 family YS110_08880 PF01548 Transposase YS110_08895 PF02872 5'-nucleotidase, C-terminal domain YS110_08895 PF00149 Calcineurin-like phosphoesterase YS110_08900 PF00892 EamA-like transporter family YS110_08905 PF01435 Peptidase family M48 YS110_08910 PF04011 LemA family YS110_08930 PF02634 FdhD/NarQ family YS110_08940 PF13247 4Fe-4S dicluster domain YS110_08940 PF09163 Formate dehydrogenase N, transmembrane YS110_08945 PF01292 Prokaryotic cytochrome b561 YS110_08950 PF04216 Protein involved in formate dehydrogenase formation YS110_08955 PF12390 Selenocysteine synthase N terminal YS110_08955 PF03841 L-seryl-tRNA selenium transferase YS110_08980 PF07715 TonB-dependent Receptor Plug Domain YS110_08980 PF00593 TonB dependent receptor YS110_08990 PF09107 Elongation factor SelB, winged helix YS110_08990 PF09106 Elongation factor SelB, winged helix YS110_08990 PF03144 Elongation factor Tu domain 2 YS110_08990 PF00009 Elongation factor Tu GTP binding domain YS110_09040 PF00501 AMP-binding enzyme YS110_09040 PF13193 AMP-binding enzyme C-terminal domain YS110_09045 PF00441 Acyl-CoA dehydrogenase, C-terminal domain YS110_09045 PF02771 Acyl-CoA dehydrogenase, N-terminal domain YS110_09045 PF02770 Acyl-CoA dehydrogenase, middle domain YS110_09060 PF00586 AIR synthase related protein, N-terminal domain YS110_09060 PF02769 AIR synthase related protein, C-terminal domain YS110_09065 PF10609 NUBPL iron-transfer P-loop NTPase YS110_09075 PF00593 TonB dependent receptor YS110_09075 PF07715 TonB-dependent Receptor Plug Domain YS110_09085 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) YS110_09085 PF00512 His Kinase A (phospho-acceptor) domain YS110_09085 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YS110_09085 PF00672 HAMP domain YS110_09085 PF01627 Hpt domain YS110_09085 PF00072 Response regulator receiver domain YS110_09090 PF00563 EAL domain YS110_09090 PF01590 GAF domain YS110_09090 PF00360 Phytochrome region YS110_09090 PF00990 Diguanylate cyclase, GGDEF domain YS110_09095 PF01588 Putative tRNA binding domain YS110_09095 PF09334 tRNA synthetases class I (M) YS110_09105 PF01810 LysE type translocator YS110_09120 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain YS110_09120 PF02777 Iron/manganese superoxide dismutases, C-terminal domain YS110_09125 PF02535 ZIP Zinc transporter YS110_09135 PF13472 GDSL-like Lipase/Acylhydrolase family YS110_09155 PF01545 Cation efflux family YS110_09155 PF16916 Dimerisation domain of Zinc Transporter YS110_09160 PF02583 Metal-sensitive transcriptional repressor YS110_09175 PF00392 Bacterial regulatory proteins, gntR family YS110_09175 PF00155 Aminotransferase class I and II YS110_09180 PF03594 Benzoate membrane transport protein YS110_09185 PF01168 Alanine racemase, N-terminal domain YS110_09190 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain YS110_09190 PF00117 Glutamine amidotransferase class-I YS110_09195 PF08543 Phosphomethylpyrimidine kinase YS110_09210 PF02129 X-Pro dipeptidyl-peptidase (S15 family) YS110_09215 PF12146 Serine aminopeptidase, S33 YS110_09220 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YS110_09220 PF03466 LysR substrate binding domain YS110_09230 PF09242 Flavocytochrome c sulphide dehydrogenase, flavin-binding YS110_09230 PF10518 TAT (twin-arginine translocation) pathway signal sequence YS110_09230 PF07992 Pyridine nucleotide-disulphide oxidoreductase YS110_09265 PF13458 Periplasmic binding protein YS110_09270 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component YS110_09275 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component YS110_09280 PF03480 Bacterial extracellular solute-binding protein, family 7 YS110_09285 PF03480 Bacterial extracellular solute-binding protein, family 7 YS110_09290 PF00989 PAS fold YS110_09290 PF00512 His Kinase A (phospho-acceptor) domain YS110_09290 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YS110_09295 PF00072 Response regulator receiver domain YS110_09295 PF00196 Bacterial regulatory proteins, luxR family YS110_09300 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase YS110_09310 PF07690 Major Facilitator Superfamily YS110_09320 PF03466 LysR substrate binding domain YS110_09320 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YS110_09330 PF12833 Helix-turn-helix domain YS110_09330 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term YS110_09335 PF00890 FAD binding domain YS110_09340 PF01758 Sodium Bile acid symporter family YS110_09345 PF01070 FMN-dependent dehydrogenase YS110_09350 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain YS110_09350 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain YS110_09355 PF01548 Transposase YS110_09355 PF02371 Transposase IS116/IS110/IS902 family YS110_09370 PF02616 Segregation and condensation protein ScpA YS110_09375 PF00890 FAD binding domain YS110_09375 PF02910 Fumarate reductase flavoprotein C-term YS110_09380 PF13609 Gram-negative porin YS110_09385 PF02261 Aspartate decarboxylase YS110_09390 PF00202 Aminotransferase class-III YS110_09400 PF00155 Aminotransferase class I and II YS110_09420 PF02954 Bacterial regulatory protein, Fis family YS110_09420 PF00072 Response regulator receiver domain YS110_09420 PF00158 Sigma-54 interaction domain YS110_09430 PF04715 Anthranilate synthase component I, N terminal region YS110_09430 PF00425 chorismate binding enzyme YS110_09435 PF13458 Periplasmic binding protein YS110_09475 PF02445 Quinolinate synthetase A protein YS110_09480 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain YS110_09480 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain YS110_09485 PF00005 ABC transporter YS110_09495 PF02548 Ketopantoate hydroxymethyltransferase YS110_09500 PF02569 Pantoate-beta-alanine ligase YS110_09505 PF00171 Aldehyde dehydrogenase family YS110_09525 PF01565 FAD binding domain YS110_09525 PF04030 D-arabinono-1,4-lactone oxidase YS110_09530 PF13442 Cytochrome C oxidase, cbb3-type, subunit III YS110_09545 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus YS110_09545 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus YS110_09550 PF02556 Preprotein translocase subunit SecB YS110_09555 PF00462 Glutaredoxin YS110_09565 PF00300 Histidine phosphatase superfamily (branch 1) YS110_09570 PF13180 PDZ domain YS110_09570 PF03572 Peptidase family S41 YS110_09575 PF00899 ThiF family YS110_09585 PF00196 Bacterial regulatory proteins, luxR family YS110_09585 PF00072 Response regulator receiver domain YS110_09590 PF07730 Histidine kinase YS110_09595 PF07043 Protein of unknown function (DUF1328) YS110_09645 PF01467 Cytidylyltransferase-like YS110_09655 PF05193 Peptidase M16 inactive domain YS110_09660 PF00675 Insulinase (Peptidase family M16) YS110_09660 PF05193 Peptidase M16 inactive domain YS110_09665 PF00448 SRP54-type protein, GTPase domain YS110_09665 PF02881 SRP54-type protein, helical bundle domain YS110_09670 PF00563 EAL domain YS110_09670 PF03707 Bacterial signalling protein N terminal repeat YS110_09670 PF00990 Diguanylate cyclase, GGDEF domain YS110_09705 PF03150 Di-haem cytochrome c peroxidase YS110_09715 PF01556 DnaJ C terminal domain YS110_09715 PF00684 DnaJ central domain YS110_09715 PF00226 DnaJ domain YS110_09720 PF04320 Protein with unknown function (DUF469) YS110_09725 PF00005 ABC transporter YS110_09730 PF01032 FecCD transport family YS110_09740 PF07715 TonB-dependent Receptor Plug Domain YS110_09740 PF00593 TonB dependent receptor YS110_09765 PF00005 ABC transporter YS110_09775 PF04545 Sigma-70, region 4 YS110_09775 PF00140 Sigma-70 factor, region 1.2 YS110_09775 PF04542 Sigma-70 region 2 YS110_09780 PF02630 SCO1/SenC YS110_09785 PF01040 UbiA prenyltransferase family YS110_09805 PF00510 Cytochrome c oxidase subunit III YS110_09815 PF04442 Cytochrome c oxidase assembly protein CtaG/Cox11 YS110_09820 PF00115 Cytochrome C and Quinol oxidase polypeptide I YS110_09825 PF00116 Cytochrome C oxidase subunit II, periplasmic domain YS110_09825 PF02790 Cytochrome C oxidase subunit II, transmembrane domain YS110_09830 PF08241 Methyltransferase domain YS110_09835 PF00156 Phosphoribosyl transferase domain YS110_09840 PF00588 SpoU rRNA Methylase family YS110_09845 PF01575 MaoC like domain YS110_09850 PF01883 Iron-sulfur cluster assembly protein YS110_09850 PF10609 NUBPL iron-transfer P-loop NTPase YS110_09855 PF01810 LysE type translocator YS110_09860 PF00999 Sodium/hydrogen exchanger family YS110_09860 PF02254 TrkA-N domain YS110_09875 PF00034 Cytochrome c YS110_09880 PF00004 ATPase family associated with various cellular activities (AAA) YS110_09880 PF17862 AAA+ lid domain YS110_09880 PF01434 Peptidase family M41 YS110_09915 PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) YS110_09920 PF01176 Translation initiation factor 1A / IF-1 YS110_09930 PF00512 His Kinase A (phospho-acceptor) domain YS110_09930 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YS110_09930 PF08521 Two-component sensor kinase N-terminal YS110_09935 PF00486 Transcriptional regulatory protein, C terminal YS110_09935 PF00072 Response regulator receiver domain YS110_09955 PF13180 PDZ domain YS110_09955 PF17820 PDZ domain YS110_09960 PF03960 ArsC family YS110_09965 PF00528 Binding-protein-dependent transport system inner membrane component YS110_09970 PF08402 TOBE domain YS110_09970 PF00005 ABC transporter YS110_09980 PF01979 Amidohydrolase family YS110_09985 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain YS110_09985 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain YS110_09990 PF00156 Phosphoribosyl transferase domain YS110_09995 PF03652 Holliday junction resolvase YS110_10000 PF02622 Uncharacterized ACR, COG1678 YS110_10005 PF01627 Hpt domain YS110_10005 PF02895 Signal transducing histidine kinase, homodimeric domain YS110_10005 PF09078 CheY binding YS110_10005 PF01584 CheW-like domain YS110_10005 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YS110_10010 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain YS110_10010 PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term YS110_10015 PF01584 CheW-like domain YS110_10020 PF00072 Response regulator receiver domain YS110_10025 PF00072 Response regulator receiver domain YS110_10030 PF00301 Rubredoxin YS110_10040 PF00202 Aminotransferase class-III YS110_10045 PF09423 PhoD-like phosphatase YS110_10045 PF16655 PhoD-like phosphatase, N-terminal domain YS110_10055 PF00005 ABC transporter YS110_10055 PF13732 Domain of unknown function (DUF4162) YS110_10065 PF07731 Multicopper oxidase YS110_10065 PF00394 Multicopper oxidase YS110_10065 PF07732 Multicopper oxidase YS110_10075 PF07715 TonB-dependent Receptor Plug Domain YS110_10075 PF00593 TonB dependent receptor YS110_10085 PF01808 AICARFT/IMPCHase bienzyme YS110_10085 PF02142 MGS-like domain YS110_10090 PF02954 Bacterial regulatory protein, Fis family YS110_10095 PF01207 Dihydrouridine synthase (Dus) YS110_10100 PF01427 D-ala-D-ala dipeptidase YS110_10105 PF09335 SNARE associated Golgi protein YS110_10110 PF01628 HrcA protein C terminal domain YS110_10110 PF03444 Winged helix-turn-helix transcription repressor, HrcA DNA-binding YS110_10115 PF01513 ATP-NAD kinase YS110_10120 PF02463 RecF/RecN/SMC N terminal domain YS110_10125 PF03668 P-loop ATPase protein family YS110_10130 PF00633 Helix-hairpin-helix motif YS110_10130 PF00730 HhH-GPD superfamily base excision DNA repair protein YS110_10130 PF10576 Iron-sulfur binding domain of endonuclease III YS110_10130 PF14815 NUDIX domain YS110_10140 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain YS110_10140 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain YS110_10140 PF06827 Zinc finger found in FPG and IleRS YS110_10155 PF08544 GHMP kinases C terminal YS110_10155 PF00288 GHMP kinases N terminal domain YS110_10165 PF14572 Phosphoribosyl synthetase-associated domain YS110_10165 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase YS110_10170 PF01386 Ribosomal L25p family YS110_10170 PF14693 Ribosomal protein TL5, C-terminal domain YS110_10175 PF01195 Peptidyl-tRNA hydrolase YS110_10180 PF00037 4Fe-4S binding domain YS110_10185 PF00528 Binding-protein-dependent transport system inner membrane component YS110_10190 PF12911 N-terminal TM domain of oligopeptide transport permease C YS110_10190 PF00528 Binding-protein-dependent transport system inner membrane component YS110_10195 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle YS110_10200 PF01810 LysE type translocator YS110_10215 PF13442 Cytochrome C oxidase, cbb3-type, subunit III YS110_10220 PF00528 Binding-protein-dependent transport system inner membrane component YS110_10225 PF00005 ABC transporter YS110_10230 PF04069 Substrate binding domain of ABC-type glycine betaine transport system YS110_10235 PF00196 Bacterial regulatory proteins, luxR family YS110_10235 PF00072 Response regulator receiver domain YS110_10240 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YS110_10240 PF00512 His Kinase A (phospho-acceptor) domain YS110_10255 PF01227 GTP cyclohydrolase I YS110_10265 PF13091 PLD-like domain YS110_10285 PF02938 GAD domain YS110_10285 PF01336 OB-fold nucleic acid binding domain YS110_10285 PF00152 tRNA synthetases class II (D, K and N) YS110_10305 PF03109 ABC1 family YS110_10320 PF01209 ubiE/COQ5 methyltransferase family YS110_10355 PF00072 Response regulator receiver domain YS110_10355 PF00486 Transcriptional regulatory protein, C terminal YS110_10360 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YS110_10360 PF08521 Two-component sensor kinase N-terminal YS110_10360 PF00512 His Kinase A (phospho-acceptor) domain YS110_10365 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain YS110_10365 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain YS110_10375 PF00528 Binding-protein-dependent transport system inner membrane component YS110_10380 PF00528 Binding-protein-dependent transport system inner membrane component YS110_10385 PF00005 ABC transporter YS110_10385 PF17912 MalK OB fold domain YS110_10390 PF03009 Glycerophosphoryl diester phosphodiesterase family YS110_10400 PF01488 Shikimate / quinate 5-dehydrogenase YS110_10400 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain YS110_10400 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain YS110_10405 PF03462 PCRF domain YS110_10405 PF00472 RF-1 domain YS110_10410 PF17827 PrmC N-terminal domain YS110_10410 PF05175 Methyltransferase small domain YS110_10415 PF00462 Glutaredoxin YS110_10420 PF01595 Cyclin M transmembrane N-terminal domain YS110_10420 PF03471 Transporter associated domain YS110_10420 PF00571 CBS domain YS110_10425 PF11873 Membrane-bound lytic murein transglycosylase C, N-terminal domain YS110_10425 PF01464 Transglycosylase SLT domain YS110_10430 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) YS110_10430 PF04073 Aminoacyl-tRNA editing domain YS110_10430 PF03129 Anticodon binding domain YS110_10435 PF00293 NUDIX domain YS110_10440 PF00696 Amino acid kinase family YS110_10440 PF01472 PUA domain YS110_10445 PF01018 GTP1/OBG YS110_10445 PF01926 50S ribosome-binding GTPase YS110_10450 PF01016 Ribosomal L27 protein YS110_10455 PF00829 Ribosomal prokaryotic L21 protein YS110_10460 PF00348 Polyprenyl synthetase YS110_10470 PF00437 Type II/IV secretion system protein YS110_10470 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain YS110_10475 PF00482 Type II secretion system (T2SS), protein F YS110_10480 PF06750 Bacterial Peptidase A24 N-terminal domain YS110_10480 PF01478 Type IV leader peptidase family YS110_10485 PF01121 Dephospho-CoA kinase YS110_10490 PF07072 Cell division protein YS110_10495 PF03884 DNA gyrase inhibitor YacG YS110_10500 PF00293 NUDIX domain YS110_10510 PF01960 ArgJ family YS110_10515 PF02810 SEC-C motif YS110_10515 PF07517 SecA DEAD-like domain YS110_10515 PF01043 SecA preprotein cross-linking domain YS110_10515 PF07516 SecA Wing and Scaffold domain YS110_10530 PF04386 Stringent starvation protein B YS110_10535 PF00043 Glutathione S-transferase, C-terminal domain YS110_10535 PF02798 Glutathione S-transferase, N-terminal domain YS110_10540 PF02167 Cytochrome C1 family YS110_10545 PF00033 Cytochrome b/b6/petB YS110_10545 PF00032 Cytochrome b(C-terminal)/b6/petD YS110_10550 PF00355 Rieske [2Fe-2S] domain YS110_10550 PF10399 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal YS110_10555 PF01741 Large-conductance mechanosensitive channel, MscL YS110_10560 PF04166 Pyridoxal phosphate biosynthetic protein PdxA YS110_10565 PF01784 NIF3 (NGG1p interacting factor 3) YS110_10570 PF13180 PDZ domain YS110_10570 PF17820 PDZ domain YS110_10575 PF00902 Sec-independent protein translocase protein (TatC) YS110_10580 PF02416 mttA/Hcf106 family YS110_10585 PF02416 mttA/Hcf106 family YS110_10590 PF01230 HIT domain YS110_10605 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase YS110_10610 PF01502 Phosphoribosyl-AMP cyclohydrolase YS110_10615 PF00977 Histidine biosynthesis protein YS110_10620 PF16363 GDP-mannose 4,6 dehydratase YS110_10650 PF13439 Glycosyltransferase Family 4 YS110_10650 PF00534 Glycosyl transferases group 1 YS110_10665 PF00977 Histidine biosynthesis protein YS110_10670 PF00117 Glutamine amidotransferase class-I YS110_10675 PF00475 Imidazoleglycerol-phosphate dehydratase YS110_10680 PF00155 Aminotransferase class I and II YS110_10695 PF00144 Beta-lactamase YS110_10700 PF00155 Aminotransferase class I and II YS110_10700 PF00392 Bacterial regulatory proteins, gntR family YS110_10710 PF00815 Histidinol dehydrogenase YS110_10715 PF01634 ATP phosphoribosyltransferase YS110_10720 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) YS110_10730 PF01061 ABC-2 type transporter YS110_10735 PF00005 ABC transporter YS110_10750 PF04333 MlaA lipoprotein YS110_10755 PF02470 MlaD protein YS110_10760 PF02405 Permease MlaE YS110_10765 PF00005 ABC transporter YS110_10770 PF00005 ABC transporter YS110_10775 PF00528 Binding-protein-dependent transport system inner membrane component YS110_10780 PF00497 Bacterial extracellular solute-binding proteins, family 3 YS110_10785 PF03466 LysR substrate binding domain YS110_10785 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YS110_10795 PF00171 Aldehyde dehydrogenase family YS110_10815 PF07804 HipA-like C-terminal domain YS110_10820 PF02899 Phage integrase, N-terminal SAM-like domain YS110_10820 PF00589 Phage integrase family YS110_10825 PF07478 D-ala D-ala ligase C-terminus YS110_10825 PF01820 D-ala D-ala ligase N-terminus YS110_10850 PF05685 Putative restriction endonuclease YS110_10855 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster YS110_10855 PF07992 Pyridine nucleotide-disulphide oxidoreductase YS110_10860 PF01493 GXGXG motif YS110_10860 PF04898 Glutamate synthase central domain YS110_10860 PF01645 Conserved region in glutamate synthase YS110_10860 PF00310 Glutamine amidotransferases class-II YS110_10870 PF01794 Ferric reductase like transmembrane component YS110_10875 PF00174 Oxidoreductase molybdopterin binding domain YS110_10890 PF13286 Phosphohydrolase-associated domain YS110_10890 PF01966 HD domain YS110_10895 PF01761 3-dehydroquinate synthase YS110_10900 PF01202 Shikimate kinase YS110_10910 PF00263 Bacterial type II and III secretion system protein YS110_10910 PF03958 Bacterial type II/III secretion system short domain YS110_10910 PF11741 AMIN domain YS110_10910 PF07660 Secretin and TonB N terminus short domain YS110_10925 PF05137 Fimbrial assembly protein (PilN) YS110_10930 PF11104 Type IV pilus assembly protein PilM; YS110_10935 PF17092 Penicillin-binding protein OB-like domain YS110_10935 PF00912 Transglycosylase YS110_10935 PF00905 Penicillin binding protein transpeptidase domain YS110_10940 PF01491 Frataxin-like domain YS110_10950 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain YS110_10950 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain YS110_10960 PF01578 Cytochrome C assembly protein YS110_10965 PF05140 ResB-like family YS110_10970 PF13442 Cytochrome C oxidase, cbb3-type, subunit III YS110_10980 PF00561 alpha/beta hydrolase fold YS110_10985 PF03279 Bacterial lipid A biosynthesis acyltransferase YS110_10990 PF03279 Bacterial lipid A biosynthesis acyltransferase YS110_10995 PF02773 S-adenosylmethionine synthetase, C-terminal domain YS110_10995 PF00438 S-adenosylmethionine synthetase, N-terminal domain YS110_10995 PF02772 S-adenosylmethionine synthetase, central domain YS110_11010 PF00535 Glycosyl transferase family 2 YS110_11020 PF05922 Peptidase inhibitor I9 YS110_11020 PF00082 Subtilase family YS110_11020 PF04151 Bacterial pre-peptidase C-terminal domain YS110_11025 PF00534 Glycosyl transferases group 1 YS110_11035 PF16363 GDP-mannose 4,6 dehydratase YS110_11040 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family YS110_11065 PF00501 AMP-binding enzyme YS110_11065 PF13193 AMP-binding enzyme C-terminal domain YS110_11080 PF00535 Glycosyl transferase family 2 YS110_11090 PF00534 Glycosyl transferases group 1 YS110_11090 PF13439 Glycosyltransferase Family 4 YS110_11095 PF13847 Methyltransferase domain YS110_11095 PF00069 Protein kinase domain YS110_11100 PF00005 ABC transporter YS110_11110 PF01061 ABC-2 type transporter YS110_11115 PF00483 Nucleotidyl transferase YS110_11115 PF01050 Mannose-6-phosphate isomerase YS110_11125 PF00166 Chaperonin 10 Kd subunit YS110_11130 PF00118 TCP-1/cpn60 chaperonin family YS110_11135 PF00593 TonB dependent receptor YS110_11135 PF07715 TonB-dependent Receptor Plug Domain YS110_11140 PF00342 Phosphoglucose isomerase YS110_11145 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III YS110_11145 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal YS110_11150 PF00923 Transaldolase/Fructose-6-phosphate aldolase YS110_11155 PF02685 Glucokinase YS110_11155 PF01418 Helix-turn-helix domain, rpiR family YS110_11155 PF01380 SIS domain YS110_11160 PF00109 Beta-ketoacyl synthase, N-terminal domain YS110_11160 PF02801 Beta-ketoacyl synthase, C-terminal domain YS110_11165 PF01336 OB-fold nucleic acid binding domain YS110_11165 PF02938 GAD domain YS110_11165 PF00152 tRNA synthetases class II (D, K and N) YS110_11170 PF00672 HAMP domain YS110_11170 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain YS110_11170 PF02203 Tar ligand binding domain homologue YS110_11175 PF01161 Phosphatidylethanolamine-binding protein YS110_11180 PF08352 Oligopeptide/dipeptide transporter, C-terminal region YS110_11180 PF00005 ABC transporter YS110_11185 PF08352 Oligopeptide/dipeptide transporter, C-terminal region YS110_11185 PF00005 ABC transporter YS110_11190 PF00528 Binding-protein-dependent transport system inner membrane component YS110_11190 PF12911 N-terminal TM domain of oligopeptide transport permease C YS110_11195 PF07687 Peptidase dimerisation domain YS110_11195 PF01546 Peptidase family M20/M25/M40 YS110_11200 PF00528 Binding-protein-dependent transport system inner membrane component YS110_11210 PF13609 Gram-negative porin YS110_11215 PF02566 OsmC-like protein YS110_11220 PF00291 Pyridoxal-phosphate dependent enzyme YS110_11220 PF00585 C-terminal regulatory domain of Threonine dehydratase YS110_11225 PF02654 Cobalamin-5-phosphate synthase YS110_11240 PF08334 Type II secretion system (T2SS), protein G YS110_11240 PF07963 Prokaryotic N-terminal methylation motif YS110_11245 PF12019 Type II transport protein GspH YS110_11255 PF07963 Prokaryotic N-terminal methylation motif YS110_11255 PF11612 Type II secretion system (T2SS), protein J YS110_11275 PF00263 Bacterial type II and III secretion system protein YS110_11275 PF03958 Bacterial type II/III secretion system short domain YS110_11280 PF00437 Type II/IV secretion system protein YS110_11290 PF00296 Luciferase-like monooxygenase YS110_11295 PF00482 Type II secretion system (T2SS), protein F YS110_11300 PF00909 Ammonium Transporter Family YS110_11315 PF00664 ABC transporter transmembrane region YS110_11315 PF00005 ABC transporter YS110_11320 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain YS110_11320 PF02875 Mur ligase family, glutamate ligase domain YS110_11320 PF08245 Mur ligase middle domain YS110_11325 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain YS110_11325 PF02875 Mur ligase family, glutamate ligase domain YS110_11325 PF08245 Mur ligase middle domain YS110_11330 PF05981 CreA protein YS110_11345 PF02321 Outer membrane efflux protein YS110_11350 PF00529 HlyD membrane-fusion protein of T1SS YS110_11350 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion YS110_11355 PF07690 Major Facilitator Superfamily YS110_11360 PF01914 MarC family integral membrane protein YS110_11390 PF00005 ABC transporter YS110_11390 PF16326 ABC transporter C-terminal domain YS110_11390 PF12848 ABC transporter YS110_11400 PF01339 CheB methylesterase YS110_11400 PF00072 Response regulator receiver domain YS110_11405 PF03975 CheD chemotactic sensory transduction YS110_11410 PF01739 CheR methyltransferase, SAM binding domain YS110_11410 PF03705 CheR methyltransferase, all-alpha domain YS110_11415 PF01584 CheW-like domain YS110_11420 PF01584 CheW-like domain YS110_11420 PF02895 Signal transducing histidine kinase, homodimeric domain YS110_11420 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YS110_11420 PF01627 Hpt domain YS110_11420 PF09078 CheY binding YS110_11425 PF00072 Response regulator receiver domain YS110_11435 PF05384 Sensor protein DegS YS110_11435 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YS110_11435 PF07730 Histidine kinase YS110_11440 PF00196 Bacterial regulatory proteins, luxR family YS110_11440 PF00072 Response regulator receiver domain YS110_11445 PF01311 Bacterial export proteins, family 1 YS110_11450 PF01313 Bacterial export proteins, family 3 YS110_11455 PF00813 FliP family YS110_11465 PF16973 Flagellar motor switch protein FliN N-terminal YS110_11465 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term YS110_11470 PF02154 Flagellar motor switch protein FliM YS110_11470 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term YS110_11475 PF03748 Flagellar basal body-associated protein FliL YS110_11490 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain YS110_11490 PF18269 T3SS EscN ATPase C-terminal domain YS110_11500 PF01706 FliG C-terminal domain YS110_11500 PF14841 FliG middle domain YS110_11500 PF14842 FliG N-terminal domain YS110_11505 PF01514 Secretory protein of YscJ/FliF family YS110_11505 PF08345 Flagellar M-ring protein C-terminal YS110_11510 PF02049 Flagellar hook-basal body complex protein FliE YS110_11520 PF02561 Flagellar protein FliS YS110_11525 PF02465 Flagellar hook-associated protein 2 N-terminus YS110_11525 PF07195 Flagellar hook-associated protein 2 C-terminus YS110_11525 PF07196 Flagellin hook IN motif YS110_11530 PF00669 Bacterial flagellin N-terminal helical region YS110_11530 PF07196 Flagellin hook IN motif YS110_11530 PF00700 Bacterial flagellin C-terminal helical region YS110_11535 PF00669 Bacterial flagellin N-terminal helical region YS110_11535 PF00700 Bacterial flagellin C-terminal helical region YS110_11545 PF00483 Nucleotidyl transferase YS110_11550 PF16363 GDP-mannose 4,6 dehydratase YS110_11555 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family YS110_11560 PF08666 SAF domain YS110_11560 PF03102 NeuB family YS110_11565 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain YS110_11565 PF00205 Thiamine pyrophosphate enzyme, central domain YS110_11565 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain YS110_11575 PF16363 GDP-mannose 4,6 dehydratase YS110_11580 PF13419 Haloacid dehalogenase-like hydrolase YS110_11585 PF00535 Glycosyl transferase family 2 YS110_11590 PF00535 Glycosyl transferase family 2 YS110_11595 PF01618 MotA/TolQ/ExbB proton channel family YS110_11600 PF00691 OmpA family YS110_11600 PF13677 Membrane MotB of proton-channel complex MotA/MotB YS110_11605 PF00072 Response regulator receiver domain YS110_11610 PF04344 Chemotaxis phosphatase, CheZ YS110_11615 PF01312 FlhB HrpN YscU SpaS Family YS110_11620 PF00771 FHIPEP family YS110_11625 PF00448 SRP54-type protein, GTPase domain YS110_11635 PF04542 Sigma-70 region 2 YS110_11635 PF04539 Sigma-70 region 3 YS110_11635 PF04545 Sigma-70, region 4 YS110_11655 PF00460 Flagella basal body rod protein YS110_11660 PF06429 Flagellar basal body rod FlgEFG protein C-terminal YS110_11660 PF00460 Flagella basal body rod protein YS110_11665 PF13860 FlgD Ig-like domain YS110_11665 PF03963 Flagellar hook capping protein - N-terminal region YS110_11665 PF13861 FlgD Tudor-like domain YS110_11670 PF07559 Flagellar basal body protein FlaE YS110_11670 PF06429 Flagellar basal body rod FlgEFG protein C-terminal YS110_11670 PF00460 Flagella basal body rod protein YS110_11675 PF00460 Flagella basal body rod protein YS110_11675 PF06429 Flagellar basal body rod FlgEFG protein C-terminal YS110_11680 PF00460 Flagella basal body rod protein YS110_11680 PF06429 Flagellar basal body rod FlgEFG protein C-terminal YS110_11685 PF02107 Flagellar L-ring protein YS110_11690 PF01979 Amidohydrolase family YS110_11705 PF01435 Peptidase family M48 YS110_11730 PF00291 Pyridoxal-phosphate dependent enzyme YS110_11735 PF05189 RNA 3'-terminal phosphate cyclase (RTC), insert domain YS110_11735 PF01137 RNA 3'-terminal phosphate cyclase YS110_11740 PF01139 tRNA-splicing ligase RtcB YS110_11760 PF00158 Sigma-54 interaction domain YS110_11760 PF06956 Regulator of RNA terminal phosphate cyclase YS110_11775 PF05987 Bacterial protein of unknown function (DUF898) YS110_11785 PF00753 Metallo-beta-lactamase superfamily YS110_11785 PF16123 Hydroxyacylglutathione hydrolase C-terminus YS110_11795 PF01678 Diaminopimelate epimerase YS110_11805 PF00005 ABC transporter YS110_11810 PF00528 Binding-protein-dependent transport system inner membrane component YS110_11815 PF00528 Binding-protein-dependent transport system inner membrane component YS110_11820 PF00497 Bacterial extracellular solute-binding proteins, family 3 YS110_11830 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YS110_11830 PF03466 LysR substrate binding domain YS110_11840 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component YS110_11840 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component YS110_11845 PF03480 Bacterial extracellular solute-binding protein, family 7 YS110_11850 PF00990 Diguanylate cyclase, GGDEF domain YS110_11850 PF05230 MASE2 domain YS110_11855 PF00664 ABC transporter transmembrane region YS110_11855 PF00005 ABC transporter YS110_11860 PF03061 Thioesterase superfamily YS110_11870 PF03061 Thioesterase superfamily YS110_11875 PF00378 Enoyl-CoA hydratase/isomerase YS110_11885 PF02803 Thiolase, C-terminal domain YS110_11885 PF00108 Thiolase, N-terminal domain YS110_11890 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain YS110_11890 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain YS110_11890 PF00378 Enoyl-CoA hydratase/isomerase YS110_11900 PF12806 Acetyl-CoA dehydrogenase C-terminal like YS110_11900 PF00441 Acyl-CoA dehydrogenase, C-terminal domain YS110_11900 PF02771 Acyl-CoA dehydrogenase, N-terminal domain YS110_11900 PF02770 Acyl-CoA dehydrogenase, middle domain YS110_11915 PF00005 ABC transporter YS110_11915 PF00664 ABC transporter transmembrane region YS110_11920 PF00440 Bacterial regulatory proteins, tetR family YS110_11930 PF16198 tRNA pseudouridylate synthase B C-terminal domain YS110_11930 PF01509 TruB family pseudouridylate synthase (N terminal domain) YS110_11945 PF01553 Acyltransferase YS110_11945 PF00501 AMP-binding enzyme YS110_11970 PF00085 Thioredoxin YS110_11975 PF01966 HD domain YS110_11975 PF01743 Poly A polymerase head domain YS110_11975 PF12627 Probable RNA and SrmB- binding site of polymerase A YS110_11980 PF17284 Spermidine synthase tetramerisation domain YS110_12005 PF00005 ABC transporter YS110_12020 PF01196 Ribosomal protein L17 YS110_12025 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain YS110_12025 PF01000 RNA polymerase Rpb3/RpoA insert domain YS110_12025 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain YS110_12030 PF01479 S4 domain YS110_12030 PF00163 Ribosomal protein S4/S9 N-terminal domain YS110_12035 PF00411 Ribosomal protein S11 YS110_12040 PF00416 Ribosomal protein S13/S18 YS110_12045 PF00444 Ribosomal protein L36 YS110_12050 PF00344 SecY translocase YS110_12055 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A YS110_12060 PF00327 Ribosomal protein L30p/L7e YS110_12065 PF00333 Ribosomal protein S5, N-terminal domain YS110_12065 PF03719 Ribosomal protein S5, C-terminal domain YS110_12070 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast YS110_12075 PF00347 Ribosomal protein L6 YS110_12080 PF00410 Ribosomal protein S8 YS110_12085 PF00253 Ribosomal protein S14p/S29e YS110_12090 PF00281 Ribosomal protein L5 YS110_12090 PF00673 ribosomal L5P family C-terminus YS110_12095 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 YS110_12100 PF00238 Ribosomal protein L14p/L23e YS110_12105 PF16901 C-terminal domain of alpha-glycerophosphate oxidase YS110_12105 PF01266 FAD dependent oxidoreductase YS110_12120 PF00528 Binding-protein-dependent transport system inner membrane component YS110_12125 PF00528 Binding-protein-dependent transport system inner membrane component YS110_12130 PF00005 ABC transporter YS110_12130 PF17912 MalK OB fold domain YS110_12135 PF00005 ABC transporter YS110_12135 PF08402 TOBE domain YS110_12140 PF00455 DeoR C terminal sensor domain YS110_12140 PF08220 DeoR-like helix-turn-helix domain YS110_12145 PF02782 FGGY family of carbohydrate kinases, C-terminal domain YS110_12145 PF00370 FGGY family of carbohydrate kinases, N-terminal domain YS110_12150 PF03807 NADP oxidoreductase coenzyme F420-dependent YS110_12150 PF14748 Pyrroline-5-carboxylate reductase dimerisation YS110_12155 PF01040 UbiA prenyltransferase family YS110_12160 PF00210 Ferritin-like domain YS110_12165 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YS110_12165 PF03466 LysR substrate binding domain YS110_12170 PF00270 DEAD/DEAH box helicase YS110_12170 PF00271 Helicase conserved C-terminal domain YS110_12170 PF17191 RecG wedge domain YS110_12195 PF11806 Domain of unknown function (DUF3327) YS110_12195 PF00756 Putative esterase YS110_12200 PF00563 EAL domain YS110_12200 PF12792 CSS motif domain associated with EAL YS110_12205 PF00563 EAL domain YS110_12205 PF01590 GAF domain YS110_12205 PF00990 Diguanylate cyclase, GGDEF domain YS110_12205 PF00360 Phytochrome region YS110_12210 PF03793 PASTA domain YS110_12210 PF00069 Protein kinase domain YS110_12215 PF01226 Formate/nitrite transporter YS110_12220 PF03861 ANTAR domain YS110_12220 PF08376 Nitrate and nitrite sensing YS110_12230 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain YS110_12230 PF01077 Nitrite and sulphite reductase 4Fe-4S domain YS110_12230 PF18267 Rubredoxin NAD+ reductase C-terminal domain YS110_12230 PF07992 Pyridine nucleotide-disulphide oxidoreductase YS110_12230 PF04324 BFD-like [2Fe-2S] binding domain YS110_12235 PF02547 Queuosine biosynthesis protein YS110_12250 PF00012 Hsp70 protein YS110_12260 PF00012 Hsp70 protein YS110_12265 PF03167 Uracil DNA glycosylase superfamily YS110_12270 PF00990 Diguanylate cyclase, GGDEF domain YS110_12270 PF00563 EAL domain YS110_12270 PF03707 Bacterial signalling protein N terminal repeat YS110_12270 PF13188 PAS domain YS110_12275 PF00218 Indole-3-glycerol phosphate synthase YS110_12285 PF02885 Glycosyl transferase family, helical bundle domain YS110_12285 PF00591 Glycosyl transferase family, a/b domain YS110_12290 PF00871 Acetokinase family YS110_12295 PF01515 Phosphate acetyl/butaryl transferase YS110_12310 PF07167 Poly-beta-hydroxybutyrate polymerase (PhaC) N-terminus YS110_12310 PF00561 alpha/beta hydrolase fold YS110_12315 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain YS110_12315 PF00672 HAMP domain YS110_12315 PF02203 Tar ligand binding domain homologue YS110_12320 PF13607 Succinyl-CoA ligase like flavodoxin domain YS110_12320 PF00583 Acetyltransferase (GNAT) family YS110_12320 PF13380 CoA binding domain YS110_12325 PF00005 ABC transporter YS110_12330 PF01061 ABC-2 type transporter YS110_12335 PF05199 GMC oxidoreductase YS110_12335 PF00732 GMC oxidoreductase YS110_12340 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain YS110_12340 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain YS110_12345 PF01047 MarR family YS110_12350 PF02566 OsmC-like protein YS110_12360 PF03793 PASTA domain YS110_12360 PF00069 Protein kinase domain YS110_12370 PF00072 Response regulator receiver domain YS110_12370 PF00486 Transcriptional regulatory protein, C terminal YS110_12375 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YS110_12375 PF00512 His Kinase A (phospho-acceptor) domain YS110_12390 PF01636 Phosphotransferase enzyme family YS110_12430 PF03150 Di-haem cytochrome c peroxidase YS110_12430 PF00034 Cytochrome c YS110_12460 PF00563 EAL domain YS110_12460 PF00990 Diguanylate cyclase, GGDEF domain YS110_12460 PF03707 Bacterial signalling protein N terminal repeat YS110_12465 PF00529 HlyD membrane-fusion protein of T1SS YS110_12465 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion YS110_12470 PF00873 AcrB/AcrD/AcrF family YS110_12475 PF02321 Outer membrane efflux protein YS110_12480 PF00682 HMGL-like YS110_12490 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain YS110_12490 PF02785 Biotin carboxylase C-terminal domain YS110_12490 PF00364 Biotin-requiring enzyme YS110_12490 PF00289 Biotin carboxylase, N-terminal domain YS110_12505 PF05163 DinB family YS110_12510 PF01039 Carboxyl transferase domain YS110_12515 PF13193 AMP-binding enzyme C-terminal domain YS110_12515 PF00501 AMP-binding enzyme YS110_12530 PF13419 Haloacid dehalogenase-like hydrolase YS110_12535 PF00990 Diguanylate cyclase, GGDEF domain YS110_12535 PF00563 EAL domain YS110_12535 PF00360 Phytochrome region YS110_12535 PF01590 GAF domain YS110_12540 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle YS110_12555 PF03976 Polyphosphate kinase 2 (PPK2) YS110_12570 PF00083 Sugar (and other) transporter YS110_12575 PF00682 HMGL-like YS110_12575 PF07836 DmpG-like communication domain YS110_12580 PF01118 Semialdehyde dehydrogenase, NAD binding domain YS110_12580 PF09290 Prokaryotic acetaldehyde dehydrogenase, dimerisation YS110_12635 PF02771 Acyl-CoA dehydrogenase, N-terminal domain YS110_12635 PF00441 Acyl-CoA dehydrogenase, C-terminal domain YS110_12635 PF02770 Acyl-CoA dehydrogenase, middle domain YS110_12640 PF01740 STAS domain YS110_12650 PF13581 Histidine kinase-like ATPase domain YS110_12655 PF00484 Carbonic anhydrase YS110_12685 PF00672 HAMP domain YS110_12685 PF07228 Stage II sporulation protein E (SpoIIE) YS110_12700 PF01168 Alanine racemase, N-terminal domain YS110_12700 PF00842 Alanine racemase, C-terminal domain YS110_12720 PF02803 Thiolase, C-terminal domain YS110_12720 PF00108 Thiolase, N-terminal domain YS110_12725 PF06315 Isocitrate dehydrogenase kinase/phosphatase (AceK) YS110_12730 PF00484 Carbonic anhydrase YS110_12735 PF00441 Acyl-CoA dehydrogenase, C-terminal domain YS110_12735 PF02770 Acyl-CoA dehydrogenase, middle domain YS110_12735 PF02771 Acyl-CoA dehydrogenase, N-terminal domain YS110_12745 PF13411 MerR HTH family regulatory protein YS110_12755 PF00672 HAMP domain YS110_12755 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain YS110_12760 PF00106 short chain dehydrogenase YS110_12770 PF13193 AMP-binding enzyme C-terminal domain YS110_12770 PF00501 AMP-binding enzyme YS110_12775 PF02803 Thiolase, C-terminal domain YS110_12775 PF00108 Thiolase, N-terminal domain YS110_12780 PF03435 Saccharopine dehydrogenase NADP binding domain YS110_12785 PF00441 Acyl-CoA dehydrogenase, C-terminal domain YS110_12785 PF02770 Acyl-CoA dehydrogenase, middle domain YS110_12785 PF02771 Acyl-CoA dehydrogenase, N-terminal domain YS110_12790 PF13191 AAA ATPase domain YS110_12790 PF00069 Protein kinase domain YS110_12820 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain YS110_12820 PF02951 Prokaryotic glutathione synthetase, N-terminal domain YS110_12825 PF03594 Benzoate membrane transport protein YS110_12830 PF04452 RNA methyltransferase YS110_12835 PF01636 Phosphotransferase enzyme family YS110_12840 PF04453 LPS transport system D YS110_12845 PF00639 PPIC-type PPIASE domain YS110_12845 PF09312 SurA N-terminal domain YS110_12850 PF00398 Ribosomal RNA adenine dimethylase YS110_12860 PF00545 ribonuclease YS110_12865 PF00390 Malic enzyme, N-terminal domain YS110_12865 PF03949 Malic enzyme, NAD binding domain YS110_12865 PF01515 Phosphate acetyl/butaryl transferase YS110_12870 PF00990 Diguanylate cyclase, GGDEF domain YS110_12870 PF05230 MASE2 domain YS110_12875 PF00171 Aldehyde dehydrogenase family YS110_12880 PF00202 Aminotransferase class-III YS110_12890 PF07715 TonB-dependent Receptor Plug Domain YS110_12890 PF00593 TonB dependent receptor YS110_12910 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YS110_12910 PF03466 LysR substrate binding domain YS110_12915 PF13193 AMP-binding enzyme C-terminal domain YS110_12915 PF00501 AMP-binding enzyme YS110_12920 PF03595 Voltage-dependent anion channel YS110_12925 PF01047 MarR family YS110_12935 PF00171 Aldehyde dehydrogenase family YS110_12940 PF07715 TonB-dependent Receptor Plug Domain YS110_12940 PF00593 TonB dependent receptor YS110_12955 PF01590 GAF domain YS110_12955 PF02954 Bacterial regulatory protein, Fis family YS110_12955 PF00158 Sigma-54 interaction domain YS110_12975 PF13442 Cytochrome C oxidase, cbb3-type, subunit III YS110_12980 PF01011 PQQ enzyme repeat YS110_12980 PF13360 PQQ-like domain YS110_13005 PF09242 Flavocytochrome c sulphide dehydrogenase, flavin-binding YS110_13005 PF10518 TAT (twin-arginine translocation) pathway signal sequence YS110_13005 PF07992 Pyridine nucleotide-disulphide oxidoreductase YS110_13025 PF01627 Hpt domain YS110_13025 PF00512 His Kinase A (phospho-acceptor) domain YS110_13025 PF00072 Response regulator receiver domain YS110_13025 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YS110_13030 PF00072 Response regulator receiver domain YS110_13035 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain YS110_13035 PF00672 HAMP domain YS110_13035 PF12729 Four helix bundle sensory module for signal transduction YS110_13050 PF13603 Leucyl-tRNA synthetase, Domain 2 YS110_13050 PF08264 Anticodon-binding domain of tRNA YS110_13050 PF00133 tRNA synthetases class I (I, L, M and V) YS110_13050 PF09334 tRNA synthetases class I (M) YS110_13055 PF00924 Mechanosensitive ion channel YS110_13065 PF00563 EAL domain YS110_13065 PF13426 PAS domain YS110_13065 PF00990 Diguanylate cyclase, GGDEF domain YS110_13070 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain YS110_13070 PF00672 HAMP domain YS110_13070 PF02203 Tar ligand binding domain homologue YS110_13075 PF08447 PAS fold YS110_13075 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain YS110_13080 PF02472 Biopolymer transport protein ExbD/TolR YS110_13085 PF01618 MotA/TolQ/ExbB proton channel family YS110_13090 PF01113 Dihydrodipicolinate reductase, N-terminus YS110_13090 PF05173 Dihydrodipicolinate reductase, C-terminus YS110_13095 PF04355 SmpA / OmlA family YS110_13100 PF01475 Ferric uptake regulator family YS110_13105 PF07475 HPr Serine kinase C-terminal domain YS110_13105 PF02603 HPr Serine kinase N terminus YS110_13110 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 YS110_13115 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein YS110_13120 PF01259 SAICAR synthetase YS110_13125 PF09619 Type III secretion system lipoprotein chaperone (YscW) YS110_13130 PF00085 Thioredoxin YS110_13135 PF00731 AIR carboxylase YS110_13140 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain YS110_13140 PF02222 ATP-grasp domain YS110_13145 PF01300 Telomere recombination YS110_13145 PF03481 Putative GTP-binding controlling metal-binding YS110_13155 PF03922 OmpW family YS110_13165 PF02113 D-Ala-D-Ala carboxypeptidase 3 (S13) family YS110_13170 PF00814 Glycoprotease family YS110_13175 PF00583 Acetyltransferase (GNAT) family YS110_13185 PF01544 CorA-like Mg2+ transporter protein YS110_13195 PF00664 ABC transporter transmembrane region YS110_13195 PF00005 ABC transporter YS110_13205 PF00535 Glycosyl transferase family 2 YS110_13205 PF01501 Glycosyl transferase family 8 YS110_13210 PF00535 Glycosyl transferase family 2 YS110_13215 PF00535 Glycosyl transferase family 2 YS110_13230 PF00114 Pilin (bacterial filament) YS110_13230 PF07963 Prokaryotic N-terminal methylation motif YS110_13260 PF01048 Phosphorylase superfamily YS110_13265 PF13193 AMP-binding enzyme C-terminal domain YS110_13265 PF00501 AMP-binding enzyme YS110_13275 PF01116 Fructose-bisphosphate aldolase class-II YS110_13280 PF02887 Pyruvate kinase, alpha/beta domain YS110_13280 PF00224 Pyruvate kinase, barrel domain YS110_13285 PF00472 RF-1 domain YS110_13295 PF05195 Aminopeptidase P, N-terminal domain YS110_13295 PF00557 Metallopeptidase family M24 YS110_13300 PF00483 Nucleotidyl transferase YS110_13305 PF00196 Bacterial regulatory proteins, luxR family YS110_13305 PF00072 Response regulator receiver domain YS110_13310 PF00512 His Kinase A (phospho-acceptor) domain YS110_13310 PF00072 Response regulator receiver domain YS110_13310 PF13426 PAS domain YS110_13310 PF08448 PAS fold YS110_13310 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YS110_13315 PF02308 MgtC family YS110_13320 PF00690 Cation transporter/ATPase, N-terminus YS110_13320 PF00689 Cation transporting ATPase, C-terminus YS110_13330 PF00873 AcrB/AcrD/AcrF family YS110_13335 PF00529 HlyD membrane-fusion protein of T1SS YS110_13335 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion YS110_13345 PF00486 Transcriptional regulatory protein, C terminal YS110_13345 PF00072 Response regulator receiver domain YS110_13350 PF00512 His Kinase A (phospho-acceptor) domain YS110_13350 PF02702 Osmosensitive K+ channel His kinase sensor domain YS110_13350 PF13492 GAF domain YS110_13350 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YS110_13350 PF13493 Domain of unknown function (DUF4118) YS110_13355 PF02669 K+-transporting ATPase, c chain YS110_13365 PF03814 Potassium-transporting ATPase A subunit YS110_13375 PF02780 Transketolase, C-terminal domain YS110_13375 PF00456 Transketolase, thiamine diphosphate binding domain YS110_13375 PF02779 Transketolase, pyrimidine binding domain YS110_13380 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain YS110_13380 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain YS110_13390 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase YS110_13395 PF02678 Pirin YS110_13395 PF05726 Pirin C-terminal cupin domain YS110_13400 PF07715 TonB-dependent Receptor Plug Domain YS110_13400 PF00593 TonB dependent receptor YS110_13405 PF16220 Domain of unknown function (DUF4880) YS110_13405 PF04773 FecR protein YS110_13420 PF02203 Tar ligand binding domain homologue YS110_13420 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain YS110_13420 PF00672 HAMP domain YS110_13430 PF02798 Glutathione S-transferase, N-terminal domain YS110_13445 PF03707 Bacterial signalling protein N terminal repeat YS110_13445 PF00990 Diguanylate cyclase, GGDEF domain YS110_13445 PF00563 EAL domain YS110_13450 PF02203 Tar ligand binding domain homologue YS110_13450 PF00672 HAMP domain YS110_13450 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain YS110_13460 PF13350 Tyrosine phosphatase family YS110_13470 PF01161 Phosphatidylethanolamine-binding protein YS110_13480 PF01131 DNA topoisomerase YS110_13480 PF01751 Toprim domain YS110_13490 PF03099 Biotin/lipoate A/B protein ligase family YS110_13490 PF02237 Biotin protein ligase C terminal domain YS110_13510 PF00512 His Kinase A (phospho-acceptor) domain YS110_13510 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YS110_13510 PF08521 Two-component sensor kinase N-terminal YS110_13515 PF00072 Response regulator receiver domain YS110_13515 PF00486 Transcriptional regulatory protein, C terminal YS110_13525 PF00154 recA bacterial DNA recombination protein YS110_13530 PF02631 RecX family YS110_13540 PF01118 Semialdehyde dehydrogenase, NAD binding domain YS110_13545 PF08442 ATP-grasp domain YS110_13545 PF00549 CoA-ligase YS110_13550 PF02629 CoA binding domain YS110_13550 PF00549 CoA-ligase YS110_13560 PF16697 Inner membrane component of T3SS, cytoplasmic domain YS110_13570 PF00114 Pilin (bacterial filament) YS110_13570 PF07963 Prokaryotic N-terminal methylation motif YS110_13575 PF07963 Prokaryotic N-terminal methylation motif YS110_13575 PF00114 Pilin (bacterial filament) YS110_13585 PF00535 Glycosyl transferase family 2 YS110_13600 PF13439 Glycosyltransferase Family 4 YS110_13600 PF00534 Glycosyl transferases group 1 YS110_13610 PF00534 Glycosyl transferases group 1 YS110_13610 PF13439 Glycosyltransferase Family 4 YS110_13630 PF01757 Acyltransferase family YS110_13635 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain YS110_13635 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain YS110_13635 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain YS110_13645 PF01967 MoaC family YS110_13650 PF01435 Peptidase family M48 YS110_13655 PF04020 Mycobacterial 4 TMS phage holin, superfamily IV YS110_13665 PF03741 Integral membrane protein TerC family YS110_13670 PF03741 Integral membrane protein TerC family YS110_13680 PF07152 YaeQ protein YS110_13685 PF00206 Lyase YS110_13685 PF08328 Adenylosuccinate lyase C-terminal YS110_13690 PF00043 Glutathione S-transferase, C-terminal domain YS110_13690 PF13417 Glutathione S-transferase, N-terminal domain YS110_13695 PF11871 Domain of unknown function (DUF3391) YS110_13695 PF01966 HD domain YS110_13700 PF00873 AcrB/AcrD/AcrF family YS110_13710 PF02321 Outer membrane efflux protein YS110_13720 PF08335 GlnD PII-uridylyltransferase YS110_13720 PF03710 Glutamate-ammonia ligase adenylyltransferase YS110_13730 PF00795 Carbon-nitrogen hydrolase YS110_13735 PF00989 PAS fold YS110_13735 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YS110_13735 PF00512 His Kinase A (phospho-acceptor) domain YS110_13740 PF00196 Bacterial regulatory proteins, luxR family YS110_13740 PF00072 Response regulator receiver domain YS110_13745 PF00691 OmpA family YS110_13745 PF04972 BON domain YS110_13765 PF01037 Lrp/AsnC ligand binding domain YS110_13775 PF02699 Preprotein translocase subunit YS110_13780 PF07549 SecD/SecF GG Motif YS110_13780 PF13721 SecD export protein N-terminal TM region YS110_13780 PF02355 Protein export membrane protein YS110_13785 PF07549 SecD/SecF GG Motif YS110_13785 PF02355 Protein export membrane protein YS110_13795 PF02481 DNA recombination-mediator protein A YS110_13795 PF17782 DprA winged helix domain YS110_13800 PF01476 LysM domain YS110_13805 PF01327 Polypeptide deformylase YS110_13810 PF00551 Formyl transferase YS110_13810 PF02911 Formyl transferase, C-terminal domain YS110_13825 PF00162 Phosphoglycerate kinase YS110_13840 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family YS110_13845 PF01266 FAD dependent oxidoreductase YS110_13850 PF02203 Tar ligand binding domain homologue YS110_13850 PF00672 HAMP domain YS110_13850 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain YS110_13855 PF00563 EAL domain YS110_13855 PF03707 Bacterial signalling protein N terminal repeat YS110_13855 PF00990 Diguanylate cyclase, GGDEF domain YS110_13860 PF17755 UvrA DNA-binding domain YS110_13860 PF17760 UvrA interaction domain YS110_13865 PF00583 Acetyltransferase (GNAT) family YS110_13890 PF07690 Major Facilitator Superfamily YS110_13895 PF00436 Single-strand binding protein family YS110_13920 PF00106 short chain dehydrogenase YS110_13925 PF01565 FAD binding domain YS110_13925 PF04030 D-arabinono-1,4-lactone oxidase YS110_13935 PF01040 UbiA prenyltransferase family YS110_13950 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YS110_13950 PF00512 His Kinase A (phospho-acceptor) domain YS110_13950 PF08521 Two-component sensor kinase N-terminal YS110_13955 PF00486 Transcriptional regulatory protein, C terminal YS110_13955 PF00072 Response regulator receiver domain YS110_13960 PF18081 Fanconi anemia-associated nuclease SAP domain YS110_13960 PF08774 VRR-NUC domain YS110_13965 PF00034 Cytochrome c YS110_13965 PF13442 Cytochrome C oxidase, cbb3-type, subunit III YS110_13970 PF04879 Molybdopterin oxidoreductase Fe4S4 domain YS110_13970 PF00384 Molybdopterin oxidoreductase YS110_13970 PF01568 Molydopterin dinucleotide binding domain YS110_13975 PF03916 Polysulphide reductase, NrfD YS110_13980 PF13247 4Fe-4S dicluster domain YS110_13985 PF01565 FAD binding domain YS110_13985 PF02913 FAD linked oxidases, C-terminal domain YS110_13995 PF01923 Cobalamin adenosyltransferase YS110_14000 PF03061 Thioesterase superfamily YS110_14010 PF02550 Acetyl-CoA hydrolase/transferase N-terminal domain YS110_14010 PF13336 Acetyl-CoA hydrolase/transferase C-terminal domain YS110_14015 PF00860 Permease family YS110_14030 PF00440 Bacterial regulatory proteins, tetR family YS110_14035 PF12706 Beta-lactamase superfamily domain YS110_14040 PF01494 FAD binding domain YS110_14045 PF01435 Peptidase family M48 YS110_14050 PF02371 Transposase IS116/IS110/IS902 family YS110_14050 PF01548 Transposase YS110_14055 PF00501 AMP-binding enzyme YS110_14055 PF13193 AMP-binding enzyme C-terminal domain YS110_14060 PF01066 CDP-alcohol phosphatidyltransferase YS110_14065 PF07715 TonB-dependent Receptor Plug Domain YS110_14065 PF00593 TonB dependent receptor YS110_14085 PF03775 Septum formation inhibitor MinC, C-terminal domain YS110_14085 PF05209 Septum formation inhibitor MinC, N-terminal domain YS110_14090 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain YS110_14095 PF03776 Septum formation topological specificity factor MinE YS110_14110 PF01613 Flavin reductase like domain YS110_14140 PF13533 Biotin-lipoyl like YS110_14145 PF00005 ABC transporter YS110_14170 PF00708 Acylphosphatase YS110_14190 PF00072 Response regulator receiver domain YS110_14190 PF00990 Diguanylate cyclase, GGDEF domain YS110_14190 PF00563 EAL domain YS110_14195 PF00486 Transcriptional regulatory protein, C terminal YS110_14195 PF00072 Response regulator receiver domain YS110_14200 PF01627 Hpt domain YS110_14200 PF01584 CheW-like domain YS110_14200 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YS110_14200 PF00072 Response regulator receiver domain YS110_14205 PF01739 CheR methyltransferase, SAM binding domain YS110_14205 PF03705 CheR methyltransferase, all-alpha domain YS110_14210 PF01339 CheB methylesterase YS110_14210 PF00072 Response regulator receiver domain YS110_14215 PF02743 Cache domain YS110_14215 PF00672 HAMP domain YS110_14215 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain YS110_14225 PF13307 Helicase C-terminal domain YS110_14225 PF06733 DEAD_2 YS110_14230 PF08447 PAS fold YS110_14230 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain YS110_14240 PF08274 PhnA Zinc-Ribbon YS110_14240 PF03831 PhnA domain YS110_14250 PF03473 MOSC domain YS110_14250 PF03475 3-alpha domain YS110_14255 PF01555 DNA methylase YS110_14270 PF00682 HMGL-like YS110_14270 PF08502 LeuA allosteric (dimerisation) domain YS110_14275 PF00877 NlpC/P60 family YS110_14280 PF00793 DAHP synthetase I family YS110_14285 PF00990 Diguanylate cyclase, GGDEF domain YS110_14285 PF03707 Bacterial signalling protein N terminal repeat YS110_14285 PF00563 EAL domain YS110_14295 PF04381 Putative exonuclease, RdgC YS110_14300 PF07670 Nucleoside recognition YS110_14310 PF02771 Acyl-CoA dehydrogenase, N-terminal domain YS110_14310 PF02770 Acyl-CoA dehydrogenase, middle domain YS110_14310 PF00441 Acyl-CoA dehydrogenase, C-terminal domain YS110_14315 PF02803 Thiolase, C-terminal domain YS110_14315 PF00108 Thiolase, N-terminal domain YS110_14320 PF00378 Enoyl-CoA hydratase/isomerase YS110_14325 PF00501 AMP-binding enzyme YS110_14330 PF00005 ABC transporter YS110_14350 PF12399 Branched-chain amino acid ATP-binding cassette transporter YS110_14350 PF00005 ABC transporter YS110_14360 PF00892 EamA-like transporter family YS110_14375 PF09278 MerR, DNA binding YS110_14375 PF00376 MerR family regulatory protein YS110_14385 PF00403 Heavy-metal-associated domain YS110_14390 PF02203 Tar ligand binding domain homologue YS110_14390 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain YS110_14390 PF00672 HAMP domain YS110_14395 PF00873 AcrB/AcrD/AcrF family YS110_14410 PF00072 Response regulator receiver domain YS110_14410 PF00486 Transcriptional regulatory protein, C terminal YS110_14415 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YS110_14415 PF00512 His Kinase A (phospho-acceptor) domain YS110_14420 PF02463 RecF/RecN/SMC N terminal domain YS110_14430 PF00724 NADH:flavin oxidoreductase / NADH oxidase family YS110_14435 PF00043 Glutathione S-transferase, C-terminal domain YS110_14435 PF02798 Glutathione S-transferase, N-terminal domain YS110_14440 PF03692 Putative zinc- or iron-chelating domain YS110_14455 PF00672 HAMP domain YS110_14455 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain YS110_14455 PF02203 Tar ligand binding domain homologue YS110_14460 PF01134 Glucose inhibited division protein A YS110_14460 PF13932 GidA associated domain YS110_14465 PF02527 rRNA small subunit methyltransferase G YS110_14470 PF01810 LysE type translocator YS110_14475 PF13614 AAA domain YS110_14490 PF17762 HTH domain found in ParB protein YS110_14490 PF02195 ParB-like nuclease domain YS110_14545 PF00677 Lumazine binding domain YS110_14550 PF00440 Bacterial regulatory proteins, tetR family YS110_14555 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion YS110_14565 PF00005 ABC transporter YS110_14565 PF02687 FtsX-like permease family YS110_14565 PF12704 MacB-like periplasmic core domain YS110_14575 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YS110_14580 PF00072 Response regulator receiver domain YS110_14580 PF00486 Transcriptional regulatory protein, C terminal YS110_14595 PF00970 Oxidoreductase FAD-binding domain YS110_14595 PF00111 2Fe-2S iron-sulfur cluster binding domain YS110_14595 PF00175 Oxidoreductase NAD-binding domain YS110_14600 PF00561 alpha/beta hydrolase fold YS110_14610 PF00171 Aldehyde dehydrogenase family YS110_14615 PF02080 TrkA-C domain YS110_14615 PF02254 TrkA-N domain YS110_14620 PF02386 Cation transport protein YS110_14630 PF02705 K+ potassium transporter YS110_14640 PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase YS110_14645 PF02441 Flavoprotein YS110_14650 PF08859 DGC domain YS110_14655 PF02036 SCP-2 sterol transfer family YS110_14660 PF01136 Peptidase family U32 YS110_14665 PF01136 Peptidase family U32 YS110_14670 PF07690 Major Facilitator Superfamily YS110_14675 PF00563 EAL domain YS110_14675 PF00990 Diguanylate cyclase, GGDEF domain YS110_14675 PF03707 Bacterial signalling protein N terminal repeat YS110_14685 PF12146 Serine aminopeptidase, S33 YS110_14690 PF01546 Peptidase family M20/M25/M40 YS110_14695 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain YS110_14695 PF02203 Tar ligand binding domain homologue YS110_14695 PF00672 HAMP domain YS110_14700 PF00990 Diguanylate cyclase, GGDEF domain YS110_14705 PF00672 HAMP domain YS110_14705 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain YS110_14705 PF02203 Tar ligand binding domain homologue YS110_14710 PF08241 Methyltransferase domain YS110_14715 PF00561 alpha/beta hydrolase fold YS110_14720 PF01169 Uncharacterized protein family UPF0016 YS110_14725 PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) YS110_14730 PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) YS110_14775 PF06067 Domain of unknown function (DUF932) YS110_14780 PF02195 ParB-like nuclease domain YS110_14795 PF05284 Protein of unknown function (DUF736) YS110_14825 PF13614 AAA domain YS110_14840 PF10502 Signal peptidase, peptidase S26 YS110_14850 PF00982 Glycosyltransferase family 20 YS110_14855 PF02358 Trehalose-phosphatase YS110_14865 PF00072 Response regulator receiver domain YS110_14865 PF00486 Transcriptional regulatory protein, C terminal YS110_14870 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YS110_14870 PF13492 GAF domain YS110_14870 PF13493 Domain of unknown function (DUF4118) YS110_14870 PF02702 Osmosensitive K+ channel His kinase sensor domain YS110_14870 PF00512 His Kinase A (phospho-acceptor) domain YS110_14875 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 YS110_14885 PF02669 K+-transporting ATPase, c chain YS110_14890 PF03814 Potassium-transporting ATPase A subunit YS110_14920 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YS110_14920 PF03466 LysR substrate binding domain YS110_14930 PF02534 Type IV secretory system Conjugative DNA transfer YS110_14940 PF00437 Type II/IV secretion system protein YS110_14945 PF04956 TrbC/VIRB2 family YS110_14955 PF03135 CagE, TrbE, VirB family, component of type IV transporter system YS110_14980 PF03524 Conjugal transfer protein YS110_14985 PF03743 Bacterial conjugation TrbI-like protein YS110_14995 PF00106 short chain dehydrogenase YS110_15010 PF00571 CBS domain YS110_15010 PF01380 SIS domain YS110_15015 PF02254 TrkA-N domain YS110_15015 PF02080 TrkA-C domain YS110_15015 PF00999 Sodium/hydrogen exchanger family YS110_15020 PF00990 Diguanylate cyclase, GGDEF domain YS110_15020 PF00563 EAL domain YS110_15020 PF03707 Bacterial signalling protein N terminal repeat YS110_15025 PF00156 Phosphoribosyl transferase domain YS110_15060 PF12631 MnmE helical domain YS110_15060 PF10396 GTP-binding protein TrmE N-terminus YS110_15060 PF01926 50S ribosome-binding GTPase YS110_15070 PF14849 YidC periplasmic domain YS110_15070 PF02096 60Kd inner membrane protein YS110_15075 PF01809 Putative membrane protein insertion efficiency factor YS110_15080 PF00825 Ribonuclease P YS110_15085 PF00468 Ribosomal protein L34 YS110_15090 PF11638 DnaA N-terminal domain YS110_15090 PF08299 Bacterial dnaA protein helix-turn-helix YS110_15090 PF00308 Bacterial dnaA protein YS110_15095 PF02768 DNA polymerase III beta subunit, C-terminal domain YS110_15095 PF02767 DNA polymerase III beta subunit, central domain YS110_15095 PF00712 DNA polymerase III beta subunit, N-terminal domain YS110_15100 PF00204 DNA gyrase B YS110_15100 PF18053 DNA gyrase B subunit insert domain YS110_15100 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YS110_15100 PF01751 Toprim domain YS110_15100 PF00986 DNA gyrase B subunit, carboxyl terminus YS110_15105 PF02525 Flavodoxin-like fold YS110_15145 PF01569 PAP2 superfamily YS110_15150 PF01266 FAD dependent oxidoreductase YS110_15155 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YS110_15155 PF03466 LysR substrate binding domain YS110_15160 PF03616 Sodium/glutamate symporter YS110_15165 PF13545 Crp-like helix-turn-helix domain YS110_15165 PF00027 Cyclic nucleotide-binding domain YS110_15230 PF17297 Phosphoenolpyruvate carboxykinase N-terminal domain YS110_15230 PF00821 Phosphoenolpyruvate carboxykinase C-terminal P-loop domain YS110_15240 PF13291 ACT domain YS110_15240 PF00291 Pyridoxal-phosphate dependent enzyme YS110_15245 PF00593 TonB dependent receptor YS110_15245 PF07715 TonB-dependent Receptor Plug Domain YS110_15255 PF16220 Domain of unknown function (DUF4880) YS110_15255 PF04773 FecR protein YS110_15260 PF08281 Sigma-70, region 4 YS110_15260 PF04542 Sigma-70 region 2 YS110_15265 PF07715 TonB-dependent Receptor Plug Domain YS110_15265 PF07660 Secretin and TonB N terminus short domain YS110_15265 PF00593 TonB dependent receptor YS110_15275 PF04542 Sigma-70 region 2 YS110_15275 PF08281 Sigma-70, region 4 YS110_15280 PF07715 TonB-dependent Receptor Plug Domain YS110_15280 PF00593 TonB dependent receptor YS110_15285 PF04773 FecR protein YS110_15285 PF16220 Domain of unknown function (DUF4880) YS110_15290 PF04542 Sigma-70 region 2 YS110_15290 PF08281 Sigma-70, region 4 YS110_15295 PF07715 TonB-dependent Receptor Plug Domain YS110_15295 PF07660 Secretin and TonB N terminus short domain YS110_15295 PF00593 TonB dependent receptor YS110_15300 PF04773 FecR protein YS110_15300 PF16220 Domain of unknown function (DUF4880) YS110_15305 PF04542 Sigma-70 region 2 YS110_15305 PF08281 Sigma-70, region 4 YS110_15310 PF13193 AMP-binding enzyme C-terminal domain YS110_15310 PF00501 AMP-binding enzyme YS110_15315 PF18158 Adaptive response protein AidB N-terminal domain YS110_15315 PF00441 Acyl-CoA dehydrogenase, C-terminal domain YS110_15315 PF02770 Acyl-CoA dehydrogenase, middle domain YS110_15325 PF02954 Bacterial regulatory protein, Fis family YS110_15325 PF00158 Sigma-54 interaction domain YS110_15355 PF05685 Putative restriction endonuclease YS110_15360 PF00270 DEAD/DEAH box helicase YS110_15360 PF16124 RecQ zinc-binding YS110_15360 PF09382 RQC domain YS110_15360 PF00570 HRDC domain YS110_15360 PF00271 Helicase conserved C-terminal domain YS110_15370 PF02965 Vitamin B12 dependent methionine synthase, activation domain YS110_15370 PF02310 B12 binding domain YS110_15370 PF02574 Homocysteine S-methyltransferase YS110_15370 PF00809 Pterin binding enzyme YS110_15370 PF02607 B12 binding domain YS110_15380 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain YS110_15380 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase YS110_15400 PF02514 CobN/Magnesium Chelatase YS110_15410 PF00082 Subtilase family YS110_15420 PF13746 4Fe-4S dicluster domain YS110_15420 PF12801 4Fe-4S binding domain YS110_15420 PF11614 IG-like fold at C-terminal of FixG, putative oxidoreductase YS110_15425 PF00355 Rieske [2Fe-2S] domain YS110_15425 PF10399 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal YS110_15430 PF00158 Sigma-54 interaction domain YS110_15430 PF00072 Response regulator receiver domain YS110_15430 PF02954 Bacterial regulatory protein, Fis family YS110_15440 PF00072 Response regulator receiver domain YS110_15440 PF00990 Diguanylate cyclase, GGDEF domain YS110_15445 PF00072 Response regulator receiver domain YS110_15445 PF01627 Hpt domain YS110_15445 PF00512 His Kinase A (phospho-acceptor) domain YS110_15445 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YS110_15465 PF00005 ABC transporter YS110_15465 PF12399 Branched-chain amino acid ATP-binding cassette transporter YS110_15470 PF00005 ABC transporter YS110_15475 PF03069 Acetamidase/Formamidase family YS110_15480 PF09723 Zinc ribbon domain YS110_15485 PF02574 Homocysteine S-methyltransferase YS110_15485 PF02310 B12 binding domain YS110_15485 PF02965 Vitamin B12 dependent methionine synthase, activation domain YS110_15485 PF00809 Pterin binding enzyme YS110_15485 PF02607 B12 binding domain YS110_15495 PF07715 TonB-dependent Receptor Plug Domain YS110_15495 PF00593 TonB dependent receptor YS110_15500 PF14525 AraC-binding-like domain YS110_15500 PF12833 Helix-turn-helix domain YS110_15505 PF02782 FGGY family of carbohydrate kinases, C-terminal domain YS110_15505 PF00370 FGGY family of carbohydrate kinases, N-terminal domain YS110_15510 PF16901 C-terminal domain of alpha-glycerophosphate oxidase YS110_15510 PF01266 FAD dependent oxidoreductase YS110_15515 PF01565 FAD binding domain YS110_15515 PF02913 FAD linked oxidases, C-terminal domain YS110_15535 PF01544 CorA-like Mg2+ transporter protein YS110_15540 PF00490 Delta-aminolevulinic acid dehydratase YS110_15545 PF03653 Uncharacterised protein family (UPF0093) YS110_15560 PF02129 X-Pro dipeptidyl-peptidase (S15 family) YS110_15565 PF00768 D-alanyl-D-alanine carboxypeptidase YS110_15565 PF07943 Penicillin-binding protein 5, C-terminal domain YS110_15570 PF00164 Ribosomal protein S12/S23 YS110_15575 PF00177 Ribosomal protein S7p/S5e YS110_15580 PF00679 Elongation factor G C-terminus YS110_15580 PF03144 Elongation factor Tu domain 2 YS110_15580 PF00009 Elongation factor Tu GTP binding domain YS110_15580 PF14492 Elongation Factor G, domain II YS110_15580 PF03764 Elongation factor G, domain IV YS110_15585 PF03143 Elongation factor Tu C-terminal domain YS110_15585 PF00009 Elongation factor Tu GTP binding domain YS110_15585 PF03144 Elongation factor Tu domain 2 YS110_15590 PF00338 Ribosomal protein S10p/S20e YS110_15595 PF00297 Ribosomal protein L3 YS110_15600 PF00573 Ribosomal protein L4/L1 family YS110_15605 PF00276 Ribosomal protein L23 YS110_15610 PF00181 Ribosomal Proteins L2, RNA binding domain YS110_15610 PF03947 Ribosomal Proteins L2, C-terminal domain YS110_15615 PF00203 Ribosomal protein S19 YS110_15620 PF00237 Ribosomal protein L22p/L17e YS110_15625 PF00189 Ribosomal protein S3, C-terminal domain YS110_15625 PF07650 KH domain YS110_15630 PF00252 Ribosomal protein L16p/L10e YS110_15635 PF00831 Ribosomal L29 protein YS110_15640 PF00366 Ribosomal protein S17 YS110_15645 PF08534 Redoxin YS110_15655 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) YS110_15670 PF01322 Cytochrome C' YS110_15675 PF00578 AhpC/TSA family YS110_15685 PF00381 PTS HPr component phosphorylation site YS110_15690 PF00391 PEP-utilising enzyme, mobile domain YS110_15690 PF02896 PEP-utilising enzyme, TIM barrel domain YS110_15690 PF05524 PEP-utilising enzyme, N-terminal YS110_15695 PF00175 Oxidoreductase NAD-binding domain YS110_15695 PF00970 Oxidoreductase FAD-binding domain YS110_15700 PF13458 Periplasmic binding protein YS110_15705 PF02653 Branched-chain amino acid transport system / permease component YS110_15710 PF00005 ABC transporter YS110_15755 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YS110_15755 PF03466 LysR substrate binding domain YS110_15765 PF00512 His Kinase A (phospho-acceptor) domain YS110_15765 PF00672 HAMP domain YS110_15765 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YS110_15770 PF01078 Magnesium chelatase, subunit ChlI YS110_15770 PF13335 Magnesium chelatase, subunit ChlI C-terminal YS110_15785 PF05199 GMC oxidoreductase YS110_15785 PF00732 GMC oxidoreductase YS110_15790 PF00487 Fatty acid desaturase YS110_15795 PF00111 2Fe-2S iron-sulfur cluster binding domain YS110_15795 PF00175 Oxidoreductase NAD-binding domain YS110_15795 PF00970 Oxidoreductase FAD-binding domain YS110_15800 PF12833 Helix-turn-helix domain YS110_15800 PF12852 Cupin YS110_15810 PF00543 Nitrogen regulatory protein P-II YS110_15815 PF00909 Ammonium Transporter Family YS110_15820 PF00563 EAL domain YS110_15820 PF01590 GAF domain YS110_15820 PF00990 Diguanylate cyclase, GGDEF domain YS110_15820 PF00360 Phytochrome region YS110_15825 PF01565 FAD binding domain YS110_15835 PF13183 4Fe-4S dicluster domain YS110_15835 PF02754 Cysteine-rich domain YS110_15840 PF00563 EAL domain YS110_15840 PF13188 PAS domain YS110_15840 PF03707 Bacterial signalling protein N terminal repeat YS110_15840 PF00990 Diguanylate cyclase, GGDEF domain YS110_15865 PF00255 Glutathione peroxidase YS110_15875 PF07690 Major Facilitator Superfamily YS110_15880 PF01168 Alanine racemase, N-terminal domain YS110_15880 PF00842 Alanine racemase, C-terminal domain YS110_15885 PF03150 Di-haem cytochrome c peroxidase YS110_15885 PF00034 Cytochrome c YS110_15895 PF03239 Iron permease FTR1 family YS110_15910 PF10634 Fe2+ transport protein YS110_15915 PF18073 Rubredoxin metal binding domain YS110_15920 PF01464 Transglycosylase SLT domain YS110_15920 PF00497 Bacterial extracellular solute-binding proteins, family 3 YS110_15925 PF00528 Binding-protein-dependent transport system inner membrane component YS110_15930 PF00528 Binding-protein-dependent transport system inner membrane component YS110_15935 PF07715 TonB-dependent Receptor Plug Domain YS110_15935 PF00593 TonB dependent receptor YS110_15945 PF00528 Binding-protein-dependent transport system inner membrane component YS110_15950 PF00528 Binding-protein-dependent transport system inner membrane component YS110_15950 PF12911 N-terminal TM domain of oligopeptide transport permease C YS110_15955 PF00005 ABC transporter YS110_15955 PF08352 Oligopeptide/dipeptide transporter, C-terminal region YS110_15960 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle YS110_15965 PF00664 ABC transporter transmembrane region YS110_15965 PF00005 ABC transporter YS110_15970 PF00005 ABC transporter YS110_15970 PF00664 ABC transporter transmembrane region YS110_15980 PF01618 MotA/TolQ/ExbB proton channel family YS110_15985 PF02472 Biopolymer transport protein ExbD/TolR YS110_16005 PF01063 Amino-transferase class IV YS110_16030 PF03060 Nitronate monooxygenase YS110_16035 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YS110_16035 PF03466 LysR substrate binding domain YS110_16040 PF06779 Uncharacterised MFS-type transporter YbfB YS110_16075 PF00672 HAMP domain YS110_16075 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YS110_16075 PF00512 His Kinase A (phospho-acceptor) domain YS110_16080 PF00072 Response regulator receiver domain YS110_16080 PF00486 Transcriptional regulatory protein, C terminal YS110_16085 PF07690 Major Facilitator Superfamily YS110_16095 PF07715 TonB-dependent Receptor Plug Domain YS110_16095 PF07660 Secretin and TonB N terminus short domain YS110_16095 PF00593 TonB dependent receptor YS110_16100 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion YS110_16105 PF00005 ABC transporter YS110_16105 PF02687 FtsX-like permease family YS110_16105 PF12704 MacB-like periplasmic core domain YS110_16110 PF02321 Outer membrane efflux protein YS110_16125 PF00593 TonB dependent receptor YS110_16125 PF07715 TonB-dependent Receptor Plug Domain YS110_16145 PF02954 Bacterial regulatory protein, Fis family YS110_16145 PF00158 Sigma-54 interaction domain YS110_16145 PF02830 V4R domain YS110_16145 PF06505 Activator of aromatic catabolism YS110_16150 PF06099 Phenol hydroxylase subunit YS110_16155 PF02332 Methane/Phenol/Toluene Hydroxylase YS110_16160 PF02406 MmoB/DmpM family YS110_16165 PF02332 Methane/Phenol/Toluene Hydroxylase YS110_16165 PF04945 YHS domain YS110_16175 PF00111 2Fe-2S iron-sulfur cluster binding domain YS110_16175 PF00175 Oxidoreductase NAD-binding domain YS110_16175 PF00970 Oxidoreductase FAD-binding domain YS110_16180 PF03466 LysR substrate binding domain YS110_16180 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YS110_16190 PF00111 2Fe-2S iron-sulfur cluster binding domain YS110_16195 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily YS110_16200 PF03928 Haem-degrading YS110_16210 PF00171 Aldehyde dehydrogenase family YS110_16220 PF00106 short chain dehydrogenase YS110_16225 PF09290 Prokaryotic acetaldehyde dehydrogenase, dimerisation YS110_16225 PF01118 Semialdehyde dehydrogenase, NAD binding domain YS110_16230 PF07836 DmpG-like communication domain YS110_16230 PF00682 HMGL-like YS110_16235 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain YS110_16235 PF08447 PAS fold YS110_16235 PF13426 PAS domain YS110_16250 PF01361 Tautomerase enzyme YS110_16260 PF00005 ABC transporter YS110_16265 PF01032 FecCD transport family YS110_16290 PF07715 TonB-dependent Receptor Plug Domain YS110_16290 PF00593 TonB dependent receptor YS110_16295 PF00753 Metallo-beta-lactamase superfamily YS110_16300 PF00440 Bacterial regulatory proteins, tetR family YS110_16310 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily YS110_16315 PF01557 Fumarylacetoacetate (FAA) hydrolase family YS110_16320 PF01494 FAD binding domain YS110_16325 PF00107 Zinc-binding dehydrogenase YS110_16325 PF08240 Alcohol dehydrogenase GroES-like domain YS110_16330 PF00501 AMP-binding enzyme YS110_16330 PF13193 AMP-binding enzyme C-terminal domain YS110_16335 PF13181 Tetratricopeptide repeat YS110_16335 PF00535 Glycosyl transferase family 2 YS110_16350 PF03372 Endonuclease/Exonuclease/phosphatase family YS110_16355 PF00156 Phosphoribosyl transferase domain YS110_16365 PF08543 Phosphomethylpyrimidine kinase YS110_16370 PF02637 GatB domain YS110_16370 PF02934 GatB/GatE catalytic domain YS110_16375 PF13614 AAA domain YS110_16385 PF01425 Amidase YS110_16390 PF02686 Glu-tRNAGln amidotransferase C subunit YS110_16410 PF00905 Penicillin binding protein transpeptidase domain YS110_16410 PF03717 Penicillin-binding Protein dimerisation domain YS110_16415 PF00491 Arginase family YS110_16420 PF01925 Sulfite exporter TauE/SafE YS110_16425 PF00909 Ammonium Transporter Family YS110_16435 PF00732 GMC oxidoreductase YS110_16435 PF05199 GMC oxidoreductase YS110_16440 PF02405 Permease MlaE YS110_16445 PF00005 ABC transporter YS110_16460 PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family YS110_16460 PF04055 Radical SAM superfamily YS110_16465 PF03099 Biotin/lipoate A/B protein ligase family YS110_16470 PF04359 Protein of unknown function (DUF493) YS110_16480 PF00119 ATP synthase A chain YS110_16485 PF00137 ATP synthase subunit C YS110_16490 PF00430 ATP synthase B/B' CF(0) YS110_16495 PF00213 ATP synthase delta (OSCP) subunit YS110_16500 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain YS110_16500 PF00306 ATP synthase alpha/beta chain, C terminal domain YS110_16500 PF02874 ATP synthase alpha/beta family, beta-barrel domain YS110_16505 PF00231 ATP synthase YS110_16510 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain YS110_16510 PF02874 ATP synthase alpha/beta family, beta-barrel domain YS110_16515 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain YS110_16525 PF13442 Cytochrome C oxidase, cbb3-type, subunit III YS110_16530 PF02321 Outer membrane efflux protein YS110_16535 PF00873 AcrB/AcrD/AcrF family YS110_16540 PF00529 HlyD membrane-fusion protein of T1SS YS110_16540 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion YS110_16545 PF08361 MAATS-type transcriptional repressor, C-terminal region YS110_16545 PF00440 Bacterial regulatory proteins, tetR family YS110_16580 PF00584 SecE/Sec61-gamma subunits of protein translocation complex YS110_16585 PF02357 Transcription termination factor nusG YS110_16585 PF00467 KOW motif YS110_16590 PF00298 Ribosomal protein L11, RNA binding domain YS110_16590 PF03946 Ribosomal protein L11, N-terminal domain YS110_16595 PF00687 Ribosomal protein L1p/L10e family YS110_16600 PF00466 Ribosomal protein L10 YS110_16605 PF16320 Ribosomal protein L7/L12 dimerisation domain YS110_16605 PF00542 Ribosomal protein L7/L12 C-terminal domain YS110_16610 PF04565 RNA polymerase Rpb2, domain 3 YS110_16610 PF04561 RNA polymerase Rpb2, domain 2 YS110_16610 PF00562 RNA polymerase Rpb2, domain 6 YS110_16610 PF04563 RNA polymerase beta subunit YS110_16610 PF04560 RNA polymerase Rpb2, domain 7 YS110_16610 PF10385 RNA polymerase beta subunit external 1 domain YS110_16615 PF05000 RNA polymerase Rpb1, domain 4 YS110_16615 PF04998 RNA polymerase Rpb1, domain 5 YS110_16615 PF04997 RNA polymerase Rpb1, domain 1 YS110_16615 PF00623 RNA polymerase Rpb1, domain 2 YS110_16615 PF04983 RNA polymerase Rpb1, domain 3 YS110_16625 PF01189 16S rRNA methyltransferase RsmB/F YS110_16625 PF01029 NusB family YS110_16635 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YS110_16635 PF00672 HAMP domain YS110_16635 PF00512 His Kinase A (phospho-acceptor) domain YS110_16635 PF00989 PAS fold YS110_16640 PF00158 Sigma-54 interaction domain YS110_16640 PF02954 Bacterial regulatory protein, Fis family YS110_16640 PF00072 Response regulator receiver domain YS110_16650 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases YS110_16655 PF02021 Uncharacterised protein family UPF0102 YS110_16660 PF13580 SIS domain YS110_16665 PF04972 BON domain YS110_16670 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase YS110_16670 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase YS110_16675 PF00437 Type II/IV secretion system protein YS110_16680 PF00027 Cyclic nucleotide-binding domain YS110_16680 PF13545 Crp-like helix-turn-helix domain YS110_16685 PF00437 Type II/IV secretion system protein YS110_16690 PF01168 Alanine racemase, N-terminal domain YS110_16695 PF02321 Outer membrane efflux protein YS110_16700 PF00005 ABC transporter YS110_16700 PF02687 FtsX-like permease family YS110_16700 PF12704 MacB-like periplasmic core domain YS110_16705 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion YS110_16710 PF17754 MftR C-terminal domain YS110_16710 PF00440 Bacterial regulatory proteins, tetR family YS110_16715 PF00501 AMP-binding enzyme YS110_16715 PF13193 AMP-binding enzyme C-terminal domain YS110_16720 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain YS110_16720 PF02785 Biotin carboxylase C-terminal domain YS110_16720 PF00364 Biotin-requiring enzyme YS110_16720 PF00289 Biotin carboxylase, N-terminal domain YS110_16730 PF08448 PAS fold YS110_16730 PF08447 PAS fold YS110_16730 PF00990 Diguanylate cyclase, GGDEF domain YS110_16730 PF00563 EAL domain YS110_16735 PF00551 Formyl transferase YS110_16740 PF00528 Binding-protein-dependent transport system inner membrane component YS110_16745 PF00005 ABC transporter YS110_16750 PF00005 ABC transporter YS110_16770 PF03466 LysR substrate binding domain YS110_16770 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YS110_16775 PF02913 FAD linked oxidases, C-terminal domain YS110_16775 PF01565 FAD binding domain YS110_16795 PF17874 MalT-like TPR region YS110_16795 PF00196 Bacterial regulatory proteins, luxR family YS110_16805 PF13458 Periplasmic binding protein YS110_16810 PF02653 Branched-chain amino acid transport system / permease component YS110_16820 PF00005 ABC transporter YS110_16820 PF12399 Branched-chain amino acid ATP-binding cassette transporter YS110_16825 PF00005 ABC transporter YS110_16830 PF02913 FAD linked oxidases, C-terminal domain YS110_16830 PF01565 FAD binding domain YS110_16835 PF07730 Histidine kinase YS110_16835 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YS110_16835 PF05384 Sensor protein DegS YS110_16840 PF00196 Bacterial regulatory proteins, luxR family YS110_16840 PF00072 Response regulator receiver domain YS110_16845 PF07690 Major Facilitator Superfamily YS110_16850 PF07690 Major Facilitator Superfamily YS110_16855 PF14710 Respiratory nitrate reductase alpha N-terminal YS110_16855 PF00384 Molybdopterin oxidoreductase YS110_16855 PF01568 Molydopterin dinucleotide binding domain YS110_16860 PF14711 Respiratory nitrate reductase beta C-terminal YS110_16860 PF13247 4Fe-4S dicluster domain YS110_16865 PF02613 Nitrate reductase delta subunit YS110_16870 PF02665 Nitrate reductase gamma subunit YS110_16880 PF00484 Carbonic anhydrase YS110_16885 PF00593 TonB dependent receptor YS110_16885 PF07715 TonB-dependent Receptor Plug Domain YS110_16890 PF00317 Ribonucleotide reductase, all-alpha domain YS110_16890 PF02867 Ribonucleotide reductase, barrel domain YS110_16890 PF03477 ATP cone domain YS110_16910 PF01814 Hemerythrin HHE cation binding domain YS110_16935 PF00465 Iron-containing alcohol dehydrogenase YS110_16940 PF00933 Glycosyl hydrolase family 3 N terminal domain YS110_16945 PF04879 Molybdopterin oxidoreductase Fe4S4 domain YS110_16945 PF00384 Molybdopterin oxidoreductase YS110_16945 PF01568 Molydopterin dinucleotide binding domain YS110_16950 PF01546 Peptidase family M20/M25/M40 YS110_16950 PF07687 Peptidase dimerisation domain YS110_16955 PF06974 Protein of unknown function (DUF1298) YS110_16955 PF03007 Wax ester synthase-like Acyl-CoA acyltransferase domain YS110_16965 PF00593 TonB dependent receptor YS110_16965 PF07715 TonB-dependent Receptor Plug Domain YS110_16990 PF14535 AMP-binding enzyme C-terminal domain YS110_16990 PF00501 AMP-binding enzyme YS110_16995 PF00005 ABC transporter YS110_17010 PF02653 Branched-chain amino acid transport system / permease component YS110_17015 PF12399 Branched-chain amino acid ATP-binding cassette transporter YS110_17015 PF00005 ABC transporter YS110_17020 PF00501 AMP-binding enzyme YS110_17030 PF00027 Cyclic nucleotide-binding domain YS110_17030 PF13545 Crp-like helix-turn-helix domain YS110_17040 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YS110_17040 PF00183 Hsp90 protein YS110_17045 PF11614 IG-like fold at C-terminal of FixG, putative oxidoreductase YS110_17045 PF12801 4Fe-4S binding domain YS110_17045 PF13746 4Fe-4S dicluster domain YS110_17050 PF02371 Transposase IS116/IS110/IS902 family YS110_17050 PF01548 Transposase YS110_17055 PF00072 Response regulator receiver domain YS110_17055 PF00196 Bacterial regulatory proteins, luxR family YS110_17060 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YS110_17060 PF03466 LysR substrate binding domain YS110_17065 PF01274 Malate synthase YS110_17075 PF01361 Tautomerase enzyme YS110_17080 PF07690 Major Facilitator Superfamily YS110_17085 PF13230 Glutamine amidotransferases class-II YS110_17090 PF00392 Bacterial regulatory proteins, gntR family YS110_17090 PF00155 Aminotransferase class I and II YS110_17095 PF02652 L-lactate permease YS110_17100 PF00392 Bacterial regulatory proteins, gntR family YS110_17100 PF07729 FCD domain YS110_17105 PF01070 FMN-dependent dehydrogenase YS110_17110 PF01565 FAD binding domain YS110_17110 PF09330 D-lactate dehydrogenase, membrane binding YS110_17115 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YS110_17115 PF00512 His Kinase A (phospho-acceptor) domain YS110_17120 PF00375 Sodium:dicarboxylate symporter family YS110_17135 PF07715 TonB-dependent Receptor Plug Domain YS110_17135 PF00593 TonB dependent receptor YS110_17140 PF16220 Domain of unknown function (DUF4880) YS110_17140 PF04773 FecR protein YS110_17145 PF04542 Sigma-70 region 2 YS110_17145 PF08281 Sigma-70, region 4 YS110_17160 PF05746 DALR anticodon binding domain YS110_17160 PF03485 Arginyl tRNA synthetase N terminal domain YS110_17160 PF00750 tRNA synthetases class I (R) YS110_17170 PF13462 Thioredoxin YS110_17180 PF00474 Sodium:solute symporter family YS110_17190 PF00005 ABC transporter YS110_17195 PF04552 Sigma-54, DNA binding domain YS110_17195 PF04963 Sigma-54 factor, core binding domain YS110_17195 PF00309 Sigma-54 factor, Activator interacting domain (AID) YS110_17205 PF02203 Tar ligand binding domain homologue YS110_17205 PF00672 HAMP domain YS110_17205 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain YS110_17210 PF02926 THUMP domain YS110_17210 PF01170 Putative RNA methylase family UPF0020 YS110_17220 PF02810 SEC-C motif YS110_17220 PF07517 SecA DEAD-like domain YS110_17220 PF07516 SecA Wing and Scaffold domain YS110_17220 PF01043 SecA preprotein cross-linking domain YS110_17225 PF07536 HWE histidine kinase YS110_17225 PF13426 PAS domain YS110_17230 PF00072 Response regulator receiver domain YS110_17230 PF00486 Transcriptional regulatory protein, C terminal YS110_17235 PF00563 EAL domain YS110_17235 PF03707 Bacterial signalling protein N terminal repeat YS110_17235 PF00990 Diguanylate cyclase, GGDEF domain YS110_17240 PF02203 Tar ligand binding domain homologue YS110_17240 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain YS110_17240 PF00672 HAMP domain YS110_17245 PF02464 Competence-damaged protein YS110_17250 PF04608 Phosphatidylglycerophosphatase A YS110_17265 PF01451 Low molecular weight phosphotyrosine protein phosphatase YS110_17285 PF00114 Pilin (bacterial filament) YS110_17285 PF07963 Prokaryotic N-terminal methylation motif YS110_17290 PF14245 Type IV pilin PilA YS110_17290 PF07963 Prokaryotic N-terminal methylation motif YS110_17300 PF00586 AIR synthase related protein, N-terminal domain YS110_17300 PF02769 AIR synthase related protein, C-terminal domain YS110_17305 PF04107 Glutamate-cysteine ligase family 2(GCS2) YS110_17320 PF04379 ApaG domain YS110_17325 PF00834 Ribulose-phosphate 3 epimerase family YS110_17335 PF13419 Haloacid dehalogenase-like hydrolase YS110_17340 PF00563 EAL domain YS110_17340 PF00990 Diguanylate cyclase, GGDEF domain YS110_17340 PF03707 Bacterial signalling protein N terminal repeat YS110_17345 PF00672 HAMP domain YS110_17345 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain YS110_17345 PF02203 Tar ligand binding domain homologue YS110_17350 PF00672 HAMP domain YS110_17350 PF02203 Tar ligand binding domain homologue YS110_17350 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain YS110_17360 PF00425 chorismate binding enzyme YS110_17360 PF04715 Anthranilate synthase component I, N terminal region YS110_17370 PF00117 Glutamine amidotransferase class-I YS110_17375 PF01048 Phosphorylase superfamily YS110_17375 PF10423 Bacterial AMP nucleoside phosphorylase N-terminus YS110_17380 PF03707 Bacterial signalling protein N terminal repeat YS110_17380 PF00563 EAL domain YS110_17380 PF00990 Diguanylate cyclase, GGDEF domain YS110_17390 PF01545 Cation efflux family YS110_17390 PF16916 Dimerisation domain of Zinc Transporter YS110_17395 PF02580 D-Tyr-tRNA(Tyr) deacylase YS110_17400 PF00474 Sodium:solute symporter family YS110_17410 PF00083 Sugar (and other) transporter YS110_17410 PF08946 Osmosensory transporter coiled coil YS110_17415 PF13609 Gram-negative porin YS110_17425 PF17760 UvrA interaction domain YS110_17425 PF17755 UvrA DNA-binding domain YS110_17425 PF00005 ABC transporter YS110_17430 PF00672 HAMP domain YS110_17430 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain YS110_17430 PF02203 Tar ligand binding domain homologue YS110_17435 PF00654 Voltage gated chloride channel YS110_17440 PF07690 Major Facilitator Superfamily YS110_17445 PF03466 LysR substrate binding domain YS110_17445 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YS110_17455 PF02423 Ornithine cyclodeaminase/mu-crystallin family YS110_17460 PF13442 Cytochrome C oxidase, cbb3-type, subunit III YS110_17460 PF14715 N-terminal domain of cytochrome oxidase-cbb3, FixP YS110_17470 PF16658 Class II release factor RF3, C-terminal domain YS110_17470 PF03144 Elongation factor Tu domain 2 YS110_17470 PF00009 Elongation factor Tu GTP binding domain YS110_17485 PF00593 TonB dependent receptor YS110_17485 PF07715 TonB-dependent Receptor Plug Domain YS110_17505 PF17761 DUF1016 N-terminal domain YS110_17505 PF06250 YhcG PDDEXK nuclease domain YS110_17540 PF00670 S-adenosyl-L-homocysteine hydrolase, NAD binding domain YS110_17540 PF05221 S-adenosyl-L-homocysteine hydrolase YS110_17545 PF01479 S4 domain YS110_17545 PF01728 FtsJ-like methyltransferase YS110_17550 PF02219 Methylenetetrahydrofolate reductase YS110_17560 PF03330 Lytic transglycolase YS110_17565 PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ YS110_17570 PF00069 Protein kinase domain YS110_17570 PF08308 PEGA domain YS110_17575 PF00572 Ribosomal protein L13 YS110_17580 PF00380 Ribosomal protein S9/S16 YS110_17585 PF01521 Iron-sulphur cluster biosynthesis YS110_17590 PF07690 Major Facilitator Superfamily YS110_17595 PF03702 Anhydro-N-acetylmuramic acid kinase YS110_17600 PF04225 Opacity-associated protein A LysM-like domain YS110_17600 PF01551 Peptidase family M23 YS110_17605 PF00579 tRNA synthetases class I (W and Y) YS110_17605 PF01479 S4 domain YS110_17610 PF01814 Hemerythrin HHE cation binding domain YS110_17615 PF12804 MobA-like NTP transferase domain YS110_17615 PF00132 Bacterial transferase hexapeptide (six repeats) YS110_17630 PF00226 DnaJ domain YS110_17630 PF01556 DnaJ C terminal domain YS110_17635 PF01037 Lrp/AsnC ligand binding domain YS110_17640 PF01380 SIS domain YS110_17715 PF13005 zinc-finger binding domain of transposase IS66 YS110_17715 PF03050 Transposase IS66 family YS110_17715 PF13817 IS66 C-terminal element YS110_17715 PF13007 Transposase C of IS166 homeodomain YS110_17745 PF09722 Protein of unknown function (DUF2384) YS110_17765 PF00665 Integrase core domain YS110_17770 PF11426 Tn7 transposition regulator TnsC YS110_17770 PF13401 AAA domain YS110_17800 PF00216 Bacterial DNA-binding protein YS110_17810 PF06470 SMC proteins Flexible Hinge Domain YS110_17810 PF02463 RecF/RecN/SMC N terminal domain YS110_17830 PF07690 Major Facilitator Superfamily YS110_17835 PF07690 Major Facilitator Superfamily YS110_17840 PF00144 Beta-lactamase YS110_17845 PF03466 LysR substrate binding domain YS110_17845 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YS110_17860 PF01168 Alanine racemase, N-terminal domain YS110_17860 PF14031 Putative serine dehydratase domain YS110_17865 PF00300 Histidine phosphatase superfamily (branch 1) YS110_17875 PF01171 PP-loop family YS110_17880 PF00990 Diguanylate cyclase, GGDEF domain YS110_17880 PF03707 Bacterial signalling protein N terminal repeat YS110_17880 PF00563 EAL domain YS110_17895 PF00106 short chain dehydrogenase YS110_17905 PF06508 Queuosine biosynthesis protein QueC YS110_17925 PF00043 Glutathione S-transferase, C-terminal domain YS110_17925 PF02798 Glutathione S-transferase, N-terminal domain YS110_17930 PF01812 5-formyltetrahydrofolate cyclo-ligase family YS110_17935 PF14718 Soluble lytic murein transglycosylase L domain YS110_17935 PF01464 Transglycosylase SLT domain YS110_17955 PF18331 PKHD-type hydroxylase C-terminal domain YS110_17955 PF13640 2OG-Fe(II) oxygenase superfamily YS110_17960 PF01070 FMN-dependent dehydrogenase YS110_17965 PF07715 TonB-dependent Receptor Plug Domain YS110_17965 PF00593 TonB dependent receptor YS110_17985 PF00501 AMP-binding enzyme YS110_17985 PF13193 AMP-binding enzyme C-terminal domain YS110_18000 PF00351 Biopterin-dependent aromatic amino acid hydroxylase YS110_18005 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily YS110_18015 PF00561 alpha/beta hydrolase fold YS110_18020 PF01037 Lrp/AsnC ligand binding domain YS110_18030 PF00571 CBS domain YS110_18030 PF03471 Transporter associated domain YS110_18035 PF00795 Carbon-nitrogen hydrolase YS110_18040 PF07977 FabA-like domain YS110_18045 PF00109 Beta-ketoacyl synthase, N-terminal domain YS110_18045 PF02801 Beta-ketoacyl synthase, C-terminal domain YS110_18050 PF02091 Glycyl-tRNA synthetase alpha subunit YS110_18055 PF05746 DALR anticodon binding domain YS110_18055 PF02092 Glycyl-tRNA synthetase beta subunit YS110_18085 PF00005 ABC transporter YS110_18095 PF02632 BioY family YS110_18100 PF13193 AMP-binding enzyme C-terminal domain YS110_18100 PF00501 AMP-binding enzyme YS110_18105 PF00108 Thiolase, N-terminal domain YS110_18105 PF02803 Thiolase, C-terminal domain YS110_18115 PF01867 CRISPR associated protein Cas1 YS110_18120 PF18019 HD domain YS110_18125 PF01381 Helix-turn-helix YS110_18135 PF09611 CRISPR-associated protein (Cas_Csy1) YS110_18140 PF09614 CRISPR-associated protein (Cas_Csy2) YS110_18145 PF09615 CRISPR-associated protein (Cas_Csy3) YS110_18150 PF09618 CRISPR-associated protein (Cas_Csy4) YS110_18160 PF05496 Holliday junction DNA helicase RuvB P-loop domain YS110_18160 PF05491 RuvB C-terminal winged helix domain YS110_18160 PF17864 RuvB AAA lid domain YS110_18165 PF01330 RuvA N terminal domain YS110_18165 PF07499 RuvA, C-terminal domain YS110_18170 PF02562 PhoH-like protein YS110_18175 PF02130 Uncharacterized protein family UPF0054 YS110_18180 PF01925 Sulfite exporter TauE/SafE YS110_18190 PF01476 LysM domain YS110_18190 PF04972 BON domain YS110_18195 PF03309 Type III pantothenate kinase YS110_18215 PF00106 short chain dehydrogenase YS110_18220 PF16363 GDP-mannose 4,6 dehydratase YS110_18225 PF04321 RmlD substrate binding domain YS110_18230 PF00483 Nucleotidyl transferase YS110_18235 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase YS110_18240 PF00437 Type II/IV secretion system protein YS110_18240 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain YS110_18245 PF00482 Type II secretion system (T2SS), protein F YS110_18250 PF08334 Type II secretion system (T2SS), protein G YS110_18250 PF07963 Prokaryotic N-terminal methylation motif YS110_18290 PF00263 Bacterial type II and III secretion system protein YS110_18290 PF03958 Bacterial type II/III secretion system short domain YS110_18305 PF00005 ABC transporter YS110_18305 PF14524 Wzt C-terminal domain YS110_18315 PF00639 PPIC-type PPIASE domain YS110_18315 PF09312 SurA N-terminal domain YS110_18330 PF00535 Glycosyl transferase family 2 YS110_18335 PF00535 Glycosyl transferase family 2 YS110_18360 PF00696 Amino acid kinase family YS110_18365 PF01702 Queuine tRNA-ribosyltransferase YS110_18370 PF00582 Universal stress protein family YS110_18385 PF13361 UvrD-like helicase C-terminal domain YS110_18385 PF00580 UvrD/REP helicase N-terminal domain YS110_18390 PF03547 Membrane transport protein YS110_18395 PF00710 Asparaginase, N-terminal YS110_18395 PF17763 Glutaminase/Asparaginase C-terminal domain YS110_18400 PF18319 PriA DNA helicase Cys-rich region (CRR) domain YS110_18400 PF18074 Primosomal protein N C-terminal domain YS110_18400 PF17764 3′ DNA-binding domain (3′BD) YS110_18400 PF00271 Helicase conserved C-terminal domain YS110_18400 PF00270 DEAD/DEAH box helicase YS110_18405 PF01208 Uroporphyrinogen decarboxylase (URO-D) YS110_18410 PF01425 Amidase YS110_18415 PF05532 CsbD-like YS110_18420 PF01053 Cys/Met metabolism PLP-dependent enzyme YS110_18425 PF13380 CoA binding domain YS110_18440 PF00578 AhpC/TSA family YS110_18445 PF13098 Thioredoxin-like domain YS110_18445 PF02683 Cytochrome C biogenesis protein transmembrane region YS110_18445 PF11412 Disulphide bond corrector protein DsbC YS110_18485 PF00291 Pyridoxal-phosphate dependent enzyme YS110_18490 PF02567 Phenazine biosynthesis-like protein YS110_18495 PF00155 Aminotransferase class I and II YS110_18500 PF00892 EamA-like transporter family YS110_18510 PF00155 Aminotransferase class I and II YS110_18510 PF00392 Bacterial regulatory proteins, gntR family YS110_18520 PF00669 Bacterial flagellin N-terminal helical region YS110_18530 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase YS110_18530 PF10135 Rod binding protein YS110_18535 PF02119 Flagellar P-ring protein YS110_18545 PF00589 Phage integrase family YS110_18545 PF02899 Phage integrase, N-terminal SAM-like domain YS110_18555 PF07683 Cobalamin synthesis protein cobW C-terminal domain YS110_18555 PF02492 CobW/HypB/UreG, nucleotide-binding domain YS110_18560 PF01258 Prokaryotic dksA/traR C4-type zinc finger YS110_18570 PF00227 Proteasome subunit YS110_18575 PF00004 ATPase family associated with various cellular activities (AAA) YS110_18575 PF07724 AAA domain (Cdc48 subfamily) YS110_18580 PF00158 Sigma-54 interaction domain YS110_18585 PF02771 Acyl-CoA dehydrogenase, N-terminal domain YS110_18585 PF08028 Acyl-CoA dehydrogenase, C-terminal domain YS110_18605 PF00005 ABC transporter YS110_18605 PF12399 Branched-chain amino acid ATP-binding cassette transporter YS110_18610 PF00296 Luciferase-like monooxygenase YS110_18615 PF02771 Acyl-CoA dehydrogenase, N-terminal domain YS110_18615 PF02770 Acyl-CoA dehydrogenase, middle domain YS110_18615 PF08028 Acyl-CoA dehydrogenase, C-terminal domain YS110_18620 PF00005 ABC transporter YS110_18635 PF02653 Branched-chain amino acid transport system / permease component YS110_18640 PF02653 Branched-chain amino acid transport system / permease component YS110_18645 PF00005 ABC transporter YS110_18645 PF12399 Branched-chain amino acid ATP-binding cassette transporter YS110_18650 PF00296 Luciferase-like monooxygenase YS110_18655 PF03358 NADPH-dependent FMN reductase YS110_18665 PF00581 Rhodanese-like domain YS110_18675 PF02381 MraZ protein, putative antitoxin-like YS110_18680 PF01795 MraW methylase family YS110_18685 PF04999 Cell division protein FtsL YS110_18690 PF03717 Penicillin-binding Protein dimerisation domain YS110_18690 PF00905 Penicillin binding protein transpeptidase domain YS110_18695 PF02875 Mur ligase family, glutamate ligase domain YS110_18695 PF08245 Mur ligase middle domain YS110_18700 PF01225 Mur ligase family, catalytic domain YS110_18700 PF02875 Mur ligase family, glutamate ligase domain YS110_18700 PF08245 Mur ligase middle domain YS110_18705 PF00953 Glycosyl transferase family 4 YS110_18705 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 YS110_18710 PF02875 Mur ligase family, glutamate ligase domain YS110_18710 PF08245 Mur ligase middle domain YS110_18715 PF01098 Cell cycle protein YS110_18720 PF04101 Glycosyltransferase family 28 C-terminal domain YS110_18720 PF03033 Glycosyltransferase family 28 N-terminal domain YS110_18725 PF02875 Mur ligase family, glutamate ligase domain YS110_18725 PF01225 Mur ligase family, catalytic domain YS110_18725 PF08245 Mur ligase middle domain YS110_18730 PF07478 D-ala D-ala ligase C-terminus YS110_18730 PF01820 D-ala D-ala ligase N-terminus YS110_18735 PF03799 Cell division protein FtsQ YS110_18735 PF08478 POTRA domain, FtsQ-type YS110_18740 PF02491 SHS2 domain inserted in FTSA YS110_18745 PF12327 FtsZ family, C-terminal domain YS110_18745 PF00091 Tubulin/FtsZ family, GTPase domain YS110_18750 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase YS110_18760 PF13667 ThiC-associated domain YS110_18760 PF01964 Radical SAM ThiC family YS110_18765 PF02203 Tar ligand binding domain homologue YS110_18765 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain YS110_18765 PF00672 HAMP domain YS110_18770 PF02203 Tar ligand binding domain homologue YS110_18770 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain YS110_18770 PF00672 HAMP domain YS110_18780 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YS110_18780 PF03466 LysR substrate binding domain YS110_18790 PF02075 Crossover junction endodeoxyribonuclease RuvC YS110_18795 PF00912 Transglycosylase YS110_18800 PF18317 Shikimate 5'-dehydrogenase C-terminal domain YS110_18800 PF01488 Shikimate / quinate 5-dehydrogenase YS110_18800 PF08501 Shikimate dehydrogenase substrate binding domain YS110_18810 PF00773 RNB domain YS110_18820 PF05728 Uncharacterised protein family (UPF0227) YS110_18825 PF01098 Cell cycle protein YS110_18830 PF01523 Putative modulator of DNA gyrase YS110_18840 PF00793 DAHP synthetase I family YS110_18850 PF01225 Mur ligase family, catalytic domain YS110_18850 PF02875 Mur ligase family, glutamate ligase domain YS110_18850 PF08245 Mur ligase middle domain YS110_18860 PF08534 Redoxin YS110_18865 PF00364 Biotin-requiring enzyme YS110_18870 PF02785 Biotin carboxylase C-terminal domain YS110_18870 PF00289 Biotin carboxylase, N-terminal domain YS110_18870 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain YS110_18885 PF00294 pfkB family carbohydrate kinase YS110_18900 PF00268 Ribonucleotide reductase, small chain YS110_18905 PF00317 Ribonucleotide reductase, all-alpha domain YS110_18905 PF02867 Ribonucleotide reductase, barrel domain YS110_18905 PF03477 ATP cone domain YS110_18910 PF01510 N-acetylmuramoyl-L-alanine amidase YS110_18915 PF00072 Response regulator receiver domain YS110_18915 PF00158 Sigma-54 interaction domain YS110_18915 PF02954 Bacterial regulatory protein, Fis family YS110_18920 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YS110_18920 PF00512 His Kinase A (phospho-acceptor) domain YS110_18930 PF01578 Cytochrome C assembly protein YS110_18935 PF02881 SRP54-type protein, helical bundle domain YS110_18935 PF00448 SRP54-type protein, GTPase domain YS110_18935 PF02978 Signal peptide binding domain YS110_18940 PF00578 AhpC/TSA family YS110_18945 PF17761 DUF1016 N-terminal domain YS110_18945 PF06250 YhcG PDDEXK nuclease domain YS110_18955 PF00919 Uncharacterized protein family UPF0004 YS110_18955 PF04055 Radical SAM superfamily YS110_18955 PF01938 TRAM domain YS110_18965 PF00378 Enoyl-CoA hydratase/isomerase YS110_18985 PF10411 Disulfide bond isomerase protein N-terminus YS110_18985 PF13098 Thioredoxin-like domain YS110_18990 PF01494 FAD binding domain YS110_18995 PF06071 Protein of unknown function (DUF933) YS110_18995 PF01926 50S ribosome-binding GTPase YS110_19005 PF01272 Transcription elongation factor, GreA/GreB, C-term YS110_19005 PF03449 Transcription elongation factor, N-terminal YS110_19010 PF13291 ACT domain YS110_19010 PF02824 TGS domain YS110_19010 PF04607 Region found in RelA / SpoT proteins YS110_19015 PF01192 RNA polymerase Rpb6 YS110_19020 PF00625 Guanylate kinase YS110_19025 PF08340 Domain of unknown function (DUF1732) YS110_19025 PF03755 YicC-like family, N-terminal region YS110_19030 PF03793 PASTA domain YS110_19030 PF00069 Protein kinase domain YS110_19040 PF01138 3' exoribonuclease family, domain 1 YS110_19040 PF03725 3' exoribonuclease family, domain 2 YS110_19045 PF01725 Ham1 family YS110_19050 PF06969 HemN C-terminal domain YS110_19050 PF04055 Radical SAM superfamily YS110_19080 PF01261 Xylose isomerase-like TIM barrel YS110_19085 PF13660 Domain of unknown function (DUF4147) YS110_19085 PF05161 MOFRL family YS110_19090 PF00392 Bacterial regulatory proteins, gntR family YS110_19090 PF07729 FCD domain YS110_19100 PF07687 Peptidase dimerisation domain YS110_19100 PF01546 Peptidase family M20/M25/M40 YS110_19105 PF01546 Peptidase family M20/M25/M40 YS110_19105 PF07687 Peptidase dimerisation domain YS110_19110 PF00563 EAL domain YS110_19110 PF00990 Diguanylate cyclase, GGDEF domain YS110_19110 PF03707 Bacterial signalling protein N terminal repeat YS110_19120 PF00860 Permease family YS110_19135 PF02472 Biopolymer transport protein ExbD/TolR YS110_19140 PF01618 MotA/TolQ/ExbB proton channel family YS110_19150 PF00005 ABC transporter YS110_19155 PF01032 FecCD transport family YS110_19160 PF09957 Bacterial antitoxin of type II TA system, VapB YS110_19195 PF00593 TonB dependent receptor YS110_19195 PF07715 TonB-dependent Receptor Plug Domain YS110_19225 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YS110_19225 PF03459 TOBE domain YS110_19230 PF01515 Phosphate acetyl/butaryl transferase YS110_19230 PF03949 Malic enzyme, NAD binding domain YS110_19230 PF00390 Malic enzyme, N-terminal domain YS110_19240 PF00005 ABC transporter YS110_19245 PF00528 Binding-protein-dependent transport system inner membrane component YS110_19250 PF07690 Major Facilitator Superfamily YS110_19255 PF01039 Carboxyl transferase domain YS110_19255 PF17848 Acetyl-coA carboxylase zinc finger domain YS110_19260 PF00290 Tryptophan synthase alpha chain YS110_19265 PF00291 Pyridoxal-phosphate dependent enzyme YS110_19270 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase YS110_19275 PF01416 tRNA pseudouridine synthase YS110_19285 PF01118 Semialdehyde dehydrogenase, NAD binding domain YS110_19285 PF02774 Semialdehyde dehydrogenase, dimerisation domain YS110_19295 PF00180 Isocitrate/isopropylmalate dehydrogenase YS110_19300 PF00694 Aconitase C-terminal domain YS110_19305 PF00330 Aconitase family (aconitate hydratase) YS110_19315 PF00471 Ribosomal protein L33 YS110_19320 PF00830 Ribosomal L28 family YS110_19325 PF07992 Pyridine nucleotide-disulphide oxidoreductase YS110_19330 PF01580 FtsK/SpoIIIE family YS110_19330 PF09397 Ftsk gamma domain YS110_19330 PF13491 4TM region of DNA translocase FtsK/SpoIIIE YS110_19330 PF17854 FtsK alpha domain YS110_19335 PF01547 Bacterial extracellular solute-binding protein YS110_19340 PF00072 Response regulator receiver domain YS110_19340 PF00990 Diguanylate cyclase, GGDEF domain YS110_19345 PF03548 Outer membrane lipoprotein carrier protein LolA YS110_19350 PF00196 Bacterial regulatory proteins, luxR family YS110_19350 PF00072 Response regulator receiver domain YS110_19385 PF08240 Alcohol dehydrogenase GroES-like domain YS110_19385 PF00107 Zinc-binding dehydrogenase YS110_19390 PF00440 Bacterial regulatory proteins, tetR family YS110_19390 PF16925 Tetracyclin repressor-like, C-terminal domain YS110_19400 PF03167 Uracil DNA glycosylase superfamily YS110_19485 PF00004 ATPase family associated with various cellular activities (AAA) YS110_19485 PF16193 AAA C-terminal domain YS110_19485 PF12002 MgsA AAA+ ATPase C terminal YS110_19490 PF02653 Branched-chain amino acid transport system / permease component YS110_19495 PF02653 Branched-chain amino acid transport system / permease component YS110_19495 PF11862 Domain of unknown function (DUF3382) YS110_19500 PF12399 Branched-chain amino acid ATP-binding cassette transporter YS110_19500 PF00005 ABC transporter YS110_19505 PF00005 ABC transporter YS110_19515 PF01865 Protein of unknown function DUF47 YS110_19520 PF01384 Phosphate transporter family YS110_19535 PF00886 Ribosomal protein S16 YS110_19540 PF01782 RimM N-terminal domain YS110_19540 PF05239 PRC-barrel domain YS110_19545 PF01746 tRNA (Guanine-1)-methyltransferase YS110_19550 PF01245 Ribosomal protein L19 YS110_19555 PF00293 NUDIX domain YS110_19560 PF17113 Regulatory signalling modulator protein AmpE YS110_19560 PF03186 CobD/Cbib protein YS110_19565 PF00155 Aminotransferase class I and II YS110_19575 PF00916 Sulfate permease family YS110_19575 PF01740 STAS domain YS110_19580 PF03193 RsgA GTPase YS110_19585 PF01329 Pterin 4 alpha carbinolamine dehydratase YS110_19590 PF01435 Peptidase family M48 YS110_19595 PF00929 Exonuclease YS110_19600 PF13458 Periplasmic binding protein YS110_19605 PF00271 Helicase conserved C-terminal domain YS110_19605 PF00270 DEAD/DEAH box helicase YS110_19610 PF00563 EAL domain YS110_19610 PF13188 PAS domain YS110_19610 PF03707 Bacterial signalling protein N terminal repeat YS110_19610 PF00990 Diguanylate cyclase, GGDEF domain YS110_19615 PF07690 Major Facilitator Superfamily YS110_19625 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase YS110_19625 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase YS110_19630 PF00127 Copper binding proteins, plastocyanin/azurin family YS110_19635 PF00478 IMP dehydrogenase / GMP reductase domain YS110_19640 PF00580 UvrD/REP helicase N-terminal domain YS110_19640 PF13361 UvrD-like helicase C-terminal domain YS110_19650 PF00245 Alkaline phosphatase YS110_19655 PF00245 Alkaline phosphatase YS110_19670 PF01636 Phosphotransferase enzyme family YS110_19685 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain YS110_19685 PF01367 5'-3' exonuclease, C-terminal SAM fold YS110_19685 PF01612 3'-5' exonuclease YS110_19685 PF00476 DNA polymerase family A YS110_19695 PF01738 Dienelactone hydrolase family YS110_19710 PF07715 TonB-dependent Receptor Plug Domain YS110_19710 PF00593 TonB dependent receptor YS110_19715 PF00891 O-methyltransferase domain YS110_19725 PF04397 LytTr DNA-binding domain YS110_19725 PF00072 Response regulator receiver domain YS110_19730 PF06580 Histidine kinase YS110_19730 PF07694 5TMR of 5TMR-LYT YS110_19735 PF00206 Lyase YS110_19735 PF14698 Argininosuccinate lyase C-terminal YS110_19740 PF14864 Alkyl sulfatase C-terminal YS110_19740 PF14863 Alkyl sulfatase dimerisation YS110_19740 PF00753 Metallo-beta-lactamase superfamily YS110_19745 PF05199 GMC oxidoreductase YS110_19745 PF00732 GMC oxidoreductase YS110_19750 PF00171 Aldehyde dehydrogenase family YS110_19755 PF12833 Helix-turn-helix domain YS110_19755 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term YS110_19760 PF03401 Tripartite tricarboxylate transporter family receptor YS110_19765 PF10996 Beta-Casp domain YS110_19765 PF00753 Metallo-beta-lactamase superfamily YS110_19765 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain YS110_19770 PF00684 DnaJ central domain YS110_19770 PF01556 DnaJ C terminal domain YS110_19770 PF00226 DnaJ domain YS110_19775 PF00012 Hsp70 protein YS110_19780 PF01025 GrpE YS110_19785 PF01250 Ribosomal protein S6 YS110_19795 PF01084 Ribosomal protein S18 YS110_19800 PF03948 Ribosomal protein L9, C-terminal domain YS110_19800 PF01281 Ribosomal protein L9, N-terminal domain YS110_19805 PF00772 DnaB-like helicase N terminal domain YS110_19805 PF03796 DnaB-like helicase C terminal domain YS110_19820 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain YS110_19820 PF00437 Type II/IV secretion system protein YS110_19830 PF01970 Tripartite tricarboxylate transporter TctA family YS110_19845 PF00990 Diguanylate cyclase, GGDEF domain YS110_19845 PF03707 Bacterial signalling protein N terminal repeat YS110_19845 PF00563 EAL domain YS110_19850 PF00892 EamA-like transporter family YS110_19855 PF08240 Alcohol dehydrogenase GroES-like domain YS110_19855 PF00107 Zinc-binding dehydrogenase YS110_19865 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YS110_19865 PF03466 LysR substrate binding domain YS110_19870 PF13593 SBF-like CPA transporter family (DUF4137) YS110_19875 PF02690 Na+/Pi-cotransporter YS110_19890 PF01252 Signal peptidase (SPase) II YS110_19895 PF08264 Anticodon-binding domain of tRNA YS110_19895 PF00133 tRNA synthetases class I (I, L, M and V) YS110_19895 PF06827 Zinc finger found in FPG and IleRS YS110_19900 PF06574 FAD synthetase YS110_19900 PF01687 Riboflavin kinase YS110_19915 PF00512 His Kinase A (phospho-acceptor) domain YS110_19915 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YS110_19920 PF00486 Transcriptional regulatory protein, C terminal YS110_19920 PF00072 Response regulator receiver domain YS110_19935 PF00441 Acyl-CoA dehydrogenase, C-terminal domain YS110_19935 PF02770 Acyl-CoA dehydrogenase, middle domain YS110_19935 PF02771 Acyl-CoA dehydrogenase, N-terminal domain YS110_19940 PF02771 Acyl-CoA dehydrogenase, N-terminal domain YS110_19940 PF02770 Acyl-CoA dehydrogenase, middle domain YS110_19940 PF00441 Acyl-CoA dehydrogenase, C-terminal domain YS110_19945 PF04337 Protein of unknown function, DUF480 YS110_19950 PF00551 Formyl transferase YS110_19960 PF00072 Response regulator receiver domain YS110_19960 PF00486 Transcriptional regulatory protein, C terminal YS110_19965 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YS110_19965 PF00672 HAMP domain YS110_19965 PF00512 His Kinase A (phospho-acceptor) domain YS110_19980 PF01189 16S rRNA methyltransferase RsmB/F YS110_19980 PF01029 NusB family YS110_19990 PF00392 Bacterial regulatory proteins, gntR family YS110_19990 PF00155 Aminotransferase class I and II YS110_19995 PF00486 Transcriptional regulatory protein, C terminal YS110_19995 PF00072 Response regulator receiver domain YS110_20025 PF01926 50S ribosome-binding GTPase YS110_20025 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal YS110_20040 PF01926 50S ribosome-binding GTPase YS110_20040 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal YS110_20080 PF02142 MGS-like domain YS110_20090 PF00912 Transglycosylase YS110_20090 PF00905 Penicillin binding protein transpeptidase domain YS110_20100 PF13689 YfiR/HmsC-like YS110_20105 PF17152 Periplasmic sensor domain YS110_20105 PF00990 Diguanylate cyclase, GGDEF domain YS110_20110 PF00691 OmpA family YS110_20115 PF01070 FMN-dependent dehydrogenase YS110_20120 PF00817 impB/mucB/samB family YS110_20120 PF11799 impB/mucB/samB family C-terminal domain YS110_20130 PF08447 PAS fold YS110_20130 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain YS110_20135 PF08447 PAS fold YS110_20135 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain YS110_20150 PF14489 QueF-like protein YS110_20150 PF14819 Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term YS110_20155 PF03169 OPT oligopeptide transporter protein YS110_20165 PF03883 Peroxide stress protein YaaA YS110_20170 PF10150 Ribonuclease E/G family YS110_20170 PF00575 S1 RNA binding domain YS110_20170 PF12111 Polyribonucleotide phosphorylase C terminal YS110_20175 PF00849 RNA pseudouridylate synthase YS110_20175 PF01479 S4 domain YS110_20180 PF13419 Haloacid dehalogenase-like hydrolase YS110_20190 PF01343 Peptidase family S49 YS110_20190 PF06965 Na+/H+ antiporter 1 YS110_20195 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases YS110_20200 PF02545 Maf-like protein YS110_20205 PF02620 Large ribosomal RNA subunit accumulation protein YceD YS110_20210 PF01783 Ribosomal L32p protein family YS110_20215 PF02504 Fatty acid synthesis protein YS110_20220 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal YS110_20220 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III YS110_20225 PF00698 Acyl transferase domain YS110_20235 PF00550 Phosphopantetheine attachment site YS110_20240 PF02801 Beta-ketoacyl synthase, C-terminal domain YS110_20240 PF00109 Beta-ketoacyl synthase, N-terminal domain YS110_20250 PF04542 Sigma-70 region 2 YS110_20250 PF08281 Sigma-70, region 4 YS110_20255 PF03873 Anti sigma-E protein RseA, C-terminal domain YS110_20255 PF03872 Anti sigma-E protein RseA, N-terminal domain YS110_20260 PF13180 PDZ domain YS110_20265 PF02702 Osmosensitive K+ channel His kinase sensor domain YS110_20265 PF00512 His Kinase A (phospho-acceptor) domain YS110_20265 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YS110_20265 PF13492 GAF domain YS110_20265 PF13493 Domain of unknown function (DUF4118) YS110_20270 PF00072 Response regulator receiver domain YS110_20270 PF00486 Transcriptional regulatory protein, C terminal YS110_20290 PF06421 GTP-binding protein LepA C-terminus YS110_20290 PF00679 Elongation factor G C-terminus YS110_20290 PF00009 Elongation factor Tu GTP binding domain YS110_20290 PF03144 Elongation factor Tu domain 2 YS110_20295 PF10502 Signal peptidase, peptidase S26 YS110_20305 PF00035 Double-stranded RNA binding motif YS110_20305 PF14622 Ribonuclease-III-like YS110_20310 PF07650 KH domain YS110_20310 PF01926 50S ribosome-binding GTPase YS110_20315 PF02565 Recombination protein O C terminal YS110_20315 PF11967 Recombination protein O N terminal YS110_20320 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ YS110_20325 PF01648 4'-phosphopantetheinyl transferase superfamily YS110_20330 PF00933 Glycosyl hydrolase family 3 N terminal domain YS110_20360 PF07732 Multicopper oxidase YS110_20360 PF07731 Multicopper oxidase YS110_20360 PF00394 Multicopper oxidase YS110_20380 PF00732 GMC oxidoreductase YS110_20380 PF05199 GMC oxidoreductase YS110_20395 PF00563 EAL domain YS110_20395 PF01590 GAF domain YS110_20395 PF00360 Phytochrome region YS110_20395 PF00990 Diguanylate cyclase, GGDEF domain YS110_20400 PF01336 OB-fold nucleic acid binding domain YS110_20400 PF00152 tRNA synthetases class II (D, K and N) YS110_20420 PF02397 Bacterial sugar transferase YS110_20435 PF02325 YGGT family YS110_20440 PF00576 HIUase/Transthyretin family YS110_20465 PF00990 Diguanylate cyclase, GGDEF domain YS110_20465 PF07694 5TMR of 5TMR-LYT YS110_20485 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase YS110_20485 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain YS110_20490 PF01799 [2Fe-2S] binding domain YS110_20490 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain YS110_20490 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase YS110_20490 PF00111 2Fe-2S iron-sulfur cluster binding domain YS110_20495 PF00005 ABC transporter YS110_20500 PF02653 Branched-chain amino acid transport system / permease component YS110_20510 PF02608 ABC transporter substrate-binding protein PnrA-like YS110_20515 PF02608 ABC transporter substrate-binding protein PnrA-like YS110_20520 PF01804 Penicillin amidase YS110_20525 PF00962 Adenosine/AMP deaminase YS110_20535 PF01230 HIT domain YS110_20540 PF01979 Amidohydrolase family YS110_20545 PF00692 dUTPase YS110_20550 PF02423 Ornithine cyclodeaminase/mu-crystallin family YS110_20555 PF01470 Pyroglutamyl peptidase YS110_20560 PF04228 Putative neutral zinc metallopeptidase YS110_20565 PF00270 DEAD/DEAH box helicase YS110_20565 PF00271 Helicase conserved C-terminal domain YS110_20625 PF12679 ABC-2 family transporter protein YS110_20630 PF00005 ABC transporter YS110_20635 PF05048 Periplasmic copper-binding protein (NosD) YS110_20640 PF04205 FMN-binding domain YS110_20640 PF12801 4Fe-4S binding domain YS110_20645 PF18764 Nitrous oxide reductase propeller repeat YS110_20645 PF13473 Cupredoxin-like domain YS110_20645 PF18793 Nitrous oxide reductase propeller repeat 2 YS110_20670 PF00149 Calcineurin-like phosphoesterase YS110_20675 PF00571 CBS domain YS110_20675 PF03471 Transporter associated domain YS110_20675 PF01595 Cyclin M transmembrane N-terminal domain YS110_20680 PF00816 H-NS histone family YS110_20685 PF00330 Aconitase family (aconitate hydratase) YS110_20685 PF00694 Aconitase C-terminal domain YS110_20690 PF01494 FAD binding domain YS110_20710 PF03692 Putative zinc- or iron-chelating domain YS110_20720 PF04023 FeoA domain YS110_20720 PF07664 Ferrous iron transport protein B C terminus YS110_20720 PF17910 FeoB cytosolic helical domain YS110_20720 PF02421 Ferrous iron transport protein B YS110_20720 PF07670 Nucleoside recognition YS110_20730 PF00206 Lyase YS110_20730 PF10415 Fumarase C C-terminus YS110_20735 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain YS110_20735 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain YS110_20740 PF00202 Aminotransferase class-III YS110_20750 PF01649 Ribosomal protein S20 YS110_20755 PF03023 Lipid II flippase MurJ YS110_20760 PF13369 Transglutaminase-like superfamily YS110_20765 PF00582 Universal stress protein family YS110_20770 PF01965 DJ-1/PfpI family YS110_20785 PF00586 AIR synthase related protein, N-terminal domain YS110_20785 PF02769 AIR synthase related protein, C-terminal domain YS110_20790 PF00308 Bacterial dnaA protein YS110_20790 PF11638 DnaA N-terminal domain YS110_20790 PF08299 Bacterial dnaA protein helix-turn-helix YS110_20800 PF12627 Probable RNA and SrmB- binding site of polymerase A YS110_20800 PF12626 Polymerase A arginine-rich C-terminus YS110_20800 PF01743 Poly A polymerase head domain YS110_20805 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) YS110_20810 PF00535 Glycosyl transferase family 2 YS110_20815 PF02366 Dolichyl-phosphate-mannose-protein mannosyltransferase YS110_20835 PF03401 Tripartite tricarboxylate transporter family receptor YS110_20840 PF00111 2Fe-2S iron-sulfur cluster binding domain YS110_20840 PF00175 Oxidoreductase NAD-binding domain YS110_20840 PF00970 Oxidoreductase FAD-binding domain YS110_20850 PF00459 Inositol monophosphatase family YS110_20860 PF00588 SpoU rRNA Methylase family YS110_20865 PF00132 Bacterial transferase hexapeptide (six repeats) YS110_20875 PF00107 Zinc-binding dehydrogenase YS110_20875 PF08240 Alcohol dehydrogenase GroES-like domain YS110_20880 PF00916 Sulfate permease family YS110_20880 PF01740 STAS domain YS110_20885 PF00994 Probable molybdopterin binding domain YS110_20890 PF04751 Protein of unknown function (DUF615) YS110_20895 PF01523 Putative modulator of DNA gyrase YS110_20905 PF01734 Patatin-like phospholipase YS110_20915 PF00180 Isocitrate/isopropylmalate dehydrogenase YS110_20925 PF00563 EAL domain YS110_20925 PF00990 Diguanylate cyclase, GGDEF domain YS110_20925 PF03707 Bacterial signalling protein N terminal repeat YS110_20935 PF01165 Ribosomal protein S21 YS110_20940 PF00990 Diguanylate cyclase, GGDEF domain YS110_20955 PF10414 Sirohaem synthase dimerisation region YS110_20955 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases YS110_20955 PF14824 Sirohaem biosynthesis protein central YS110_20960 PF02885 Glycosyl transferase family, helical bundle domain YS110_20960 PF00591 Glycosyl transferase family, a/b domain YS110_20965 PF00005 ABC transporter YS110_20970 PF00528 Binding-protein-dependent transport system inner membrane component YS110_20980 PF00384 Molybdopterin oxidoreductase YS110_20980 PF01568 Molydopterin dinucleotide binding domain YS110_20980 PF04879 Molybdopterin oxidoreductase Fe4S4 domain YS110_20985 PF08447 PAS fold YS110_20985 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain YS110_20990 PF00571 CBS domain YS110_20990 PF01380 SIS domain YS110_20995 PF00814 Glycoprotease family YS110_21005 PF13458 Periplasmic binding protein YS110_21010 PF03601 Conserved hypothetical protein 698 YS110_21015 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YS110_21015 PF03466 LysR substrate binding domain YS110_21025 PF00005 ABC transporter YS110_21045 PF07715 TonB-dependent Receptor Plug Domain YS110_21045 PF00593 TonB dependent receptor YS110_21055 PF04542 Sigma-70 region 2 YS110_21055 PF08281 Sigma-70, region 4 YS110_21060 PF13406 Transglycosylase SLT domain YS110_21065 PF01841 Transglutaminase-like superfamily YS110_21065 PF13559 Domain of unknown function (DUF4129) YS110_21065 PF11992 Domain of unknown function (DUF3488) YS110_21075 PF17863 AAA lid domain YS110_21075 PF07726 ATPase family associated with various cellular activities (AAA) YS110_21080 PF00850 Histone deacetylase domain YS110_21085 PF00378 Enoyl-CoA hydratase/isomerase YS110_21090 PF12795 Mechanosensitive ion channel porin domain YS110_21090 PF00924 Mechanosensitive ion channel YS110_21090 PF12794 Mechanosensitive ion channel inner membrane domain 1 YS110_21095 PF01012 Electron transfer flavoprotein domain YS110_21100 PF01012 Electron transfer flavoprotein domain YS110_21100 PF00766 Electron transfer flavoprotein FAD-binding domain YS110_21105 PF00441 Acyl-CoA dehydrogenase, C-terminal domain YS110_21105 PF02770 Acyl-CoA dehydrogenase, middle domain YS110_21105 PF12806 Acetyl-CoA dehydrogenase C-terminal like YS110_21105 PF02771 Acyl-CoA dehydrogenase, N-terminal domain YS110_21120 PF07690 Major Facilitator Superfamily YS110_21125 PF06167 Glucose-regulated metallo-peptidase M90 YS110_21130 PF00149 Calcineurin-like phosphoesterase YS110_21135 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD YS110_21140 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD YS110_21155 PF09190 DALR domain YS110_21155 PF01406 tRNA synthetases class I (C) catalytic domain YS110_21160 PF06029 AlkA N-terminal domain YS110_21160 PF02805 Metal binding domain of Ada YS110_21160 PF12833 Helix-turn-helix domain YS110_21160 PF00730 HhH-GPD superfamily base excision DNA repair protein YS110_21165 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit YS110_21170 PF01171 PP-loop family YS110_21170 PF09179 TilS substrate binding domain YS110_21175 PF00696 Amino acid kinase family YS110_21175 PF01842 ACT domain YS110_21175 PF13840 ACT domain YS110_21190 PF13460 NAD(P)H-binding YS110_21200 PF01479 S4 domain YS110_21205 PF00158 Sigma-54 interaction domain YS110_21205 PF00072 Response regulator receiver domain YS110_21205 PF02954 Bacterial regulatory protein, Fis family YS110_21215 PF00005 ABC transporter YS110_21215 PF12399 Branched-chain amino acid ATP-binding cassette transporter YS110_21220 PF00005 ABC transporter YS110_21230 PF11862 Domain of unknown function (DUF3382) YS110_21230 PF02653 Branched-chain amino acid transport system / permease component YS110_21235 PF10605 3HB-oligomer hydrolase (3HBOH) YS110_21245 PF05362 Lon protease (S16) C-terminal proteolytic domain YS110_21245 PF13654 AAA domain YS110_21250 PF00762 Ferrochelatase YS110_21270 PF01593 Flavin containing amine oxidoreductase YS110_21285 PF00005 ABC transporter YS110_21285 PF00664 ABC transporter transmembrane region YS110_21285 PF08021 Siderophore-interacting FAD-binding domain YS110_21285 PF04954 Siderophore-interacting protein YS110_21290 PF00005 ABC transporter YS110_21295 PF01032 FecCD transport family YS110_21300 PF01032 FecCD transport family YS110_21305 PF00005 ABC transporter YS110_21310 PF01497 Periplasmic binding protein YS110_21315 PF07715 TonB-dependent Receptor Plug Domain YS110_21315 PF00593 TonB dependent receptor YS110_21320 PF08021 Siderophore-interacting FAD-binding domain YS110_21320 PF04954 Siderophore-interacting protein YS110_21330 PF03313 Serine dehydratase alpha chain YS110_21330 PF03315 Serine dehydratase beta chain YS110_21340 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion YS110_21345 PF00873 AcrB/AcrD/AcrF family YS110_21355 PF05697 Bacterial trigger factor protein (TF) YS110_21355 PF05698 Bacterial trigger factor protein (TF) C-terminus YS110_21355 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase YS110_21360 PF00574 Clp protease YS110_21365 PF07724 AAA domain (Cdc48 subfamily) YS110_21365 PF06689 ClpX C4-type zinc finger YS110_21365 PF10431 C-terminal, D2-small domain, of ClpB protein YS110_21370 PF02190 ATP-dependent protease La (LON) substrate-binding domain YS110_21370 PF05362 Lon protease (S16) C-terminal proteolytic domain YS110_21370 PF00004 ATPase family associated with various cellular activities (AAA) YS110_21395 PF01272 Transcription elongation factor, GreA/GreB, C-term YS110_21395 PF03449 Transcription elongation factor, N-terminal YS110_21410 PF01863 Protein of unknown function DUF45 YS110_21415 PF01177 Asp/Glu/Hydantoin racemase YS110_21430 PF00072 Response regulator receiver domain YS110_21430 PF00486 Transcriptional regulatory protein, C terminal YS110_21445 PF01220 Dehydroquinase class II YS110_21455 PF00472 RF-1 domain YS110_21465 PF02230 Phospholipase/Carboxylesterase YS110_21470 PF07969 Amidohydrolase family YS110_21475 PF00924 Mechanosensitive ion channel YS110_21475 PF05552 Conserved TM helix YS110_21480 PF00210 Ferritin-like domain YS110_21485 PF10417 C-terminal domain of 1-Cys peroxiredoxin YS110_21485 PF00578 AhpC/TSA family YS110_21490 PF07992 Pyridine nucleotide-disulphide oxidoreductase YS110_21490 PF13192 Thioredoxin domain YS110_21505 PF07715 TonB-dependent Receptor Plug Domain YS110_21505 PF00593 TonB dependent receptor YS110_21505 PF07660 Secretin and TonB N terminus short domain YS110_21515 PF02661 Fic/DOC family YS110_21530 PF03466 LysR substrate binding domain YS110_21530 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YS110_21535 PF07690 Major Facilitator Superfamily YS110_21550 PF02954 Bacterial regulatory protein, Fis family YS110_21550 PF00072 Response regulator receiver domain YS110_21550 PF00158 Sigma-54 interaction domain YS110_21555 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YS110_21555 PF00512 His Kinase A (phospho-acceptor) domain YS110_21560 PF03976 Polyphosphate kinase 2 (PPK2) YS110_21570 PF00005 ABC transporter YS110_21575 PF01032 FecCD transport family YS110_21580 PF01497 Periplasmic binding protein YS110_21595 PF07715 TonB-dependent Receptor Plug Domain YS110_21595 PF00593 TonB dependent receptor YS110_21625 PF00873 AcrB/AcrD/AcrF family YS110_21645 PF01758 Sodium Bile acid symporter family YS110_21650 PF01548 Transposase YS110_21650 PF02371 Transposase IS116/IS110/IS902 family YS110_21655 PF03618 Kinase/pyrophosphorylase YS110_21660 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain YS110_21660 PF00391 PEP-utilising enzyme, mobile domain YS110_21660 PF02896 PEP-utilising enzyme, TIM barrel domain YS110_21670 PF00474 Sodium:solute symporter family YS110_21680 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase YS110_21690 PF02515 CoA-transferase family III YS110_21695 PF00593 TonB dependent receptor YS110_21695 PF07660 Secretin and TonB N terminus short domain YS110_21695 PF07715 TonB-dependent Receptor Plug Domain YS110_21700 PF01381 Helix-turn-helix YS110_21715 PF08281 Sigma-70, region 4 YS110_21715 PF04542 Sigma-70 region 2 YS110_21735 PF02424 ApbE family YS110_21740 PF00667 FAD binding domain YS110_21740 PF00258 Flavodoxin YS110_21740 PF00175 Oxidoreductase NAD-binding domain YS110_21745 PF07715 TonB-dependent Receptor Plug Domain YS110_21745 PF00593 TonB dependent receptor YS110_21750 PF13411 MerR HTH family regulatory protein YS110_21760 PF08546 Ketopantoate reductase PanE/ApbA C terminal YS110_21760 PF02558 Ketopantoate reductase PanE/ApbA YS110_21765 PF13302 Acetyltransferase (GNAT) domain YS110_21770 PF03352 Methyladenine glycosylase YS110_21780 PF04546 Sigma-70, non-essential region YS110_21780 PF03979 Sigma-70 factor, region 1.1 YS110_21780 PF00140 Sigma-70 factor, region 1.2 YS110_21780 PF04542 Sigma-70 region 2 YS110_21780 PF04539 Sigma-70 region 3 YS110_21780 PF04545 Sigma-70, region 4 YS110_21785 PF10410 DnaB-helicase binding domain of primase YS110_21785 PF08278 DNA primase DnaG DnaB-binding YS110_21785 PF13662 Toprim domain YS110_21785 PF08275 DNA primase catalytic core, N-terminal domain YS110_21785 PF01807 CHC2 zinc finger YS110_21790 PF13193 AMP-binding enzyme C-terminal domain YS110_21790 PF00501 AMP-binding enzyme YS110_21830 PF00990 Diguanylate cyclase, GGDEF domain YS110_21835 PF00698 Acyl transferase domain YS110_21835 PF08240 Alcohol dehydrogenase GroES-like domain YS110_21835 PF16197 Ketoacyl-synthetase C-terminal extension YS110_21835 PF00109 Beta-ketoacyl synthase, N-terminal domain YS110_21835 PF02801 Beta-ketoacyl synthase, C-terminal domain YS110_21835 PF08659 KR domain YS110_21835 PF00550 Phosphopantetheine attachment site YS110_21835 PF14765 Polyketide synthase dehydratase YS110_21840 PF01975 Survival protein SurE YS110_21850 PF01551 Peptidase family M23 YS110_21850 PF01476 LysM domain YS110_21855 PF00849 RNA pseudouridylate synthase YS110_21855 PF01479 S4 domain YS110_21860 PF04079 Segregation and condensation complex subunit ScpB YS110_21865 PF00849 RNA pseudouridylate synthase YS110_21865 PF01479 S4 domain YS110_21870 PF00334 Nucleoside diphosphate kinase YS110_21875 PF04055 Radical SAM superfamily YS110_21890 PF04551 GcpE protein YS110_21895 PF03129 Anticodon binding domain YS110_21895 PF13393 Histidyl-tRNA synthetase YS110_21905 PF13360 PQQ-like domain YS110_21910 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal YS110_21910 PF01926 50S ribosome-binding GTPase YS110_21915 PF17209 Hfq protein YS110_21920 PF16360 GTP-binding GTPase Middle Region YS110_21920 PF13167 GTP-binding GTPase N-terminal YS110_21920 PF01926 50S ribosome-binding GTPase YS110_21925 PF01145 SPFH domain / Band 7 family YS110_21925 PF12221 Bacterial membrane protein N terminal YS110_21930 PF01145 SPFH domain / Band 7 family YS110_21940 PF13393 Histidyl-tRNA synthetase YS110_21945 PF00709 Adenylosuccinate synthetase YS110_21980 PF01479 S4 domain YS110_21980 PF00849 RNA pseudouridylate synthase YS110_22010 PF03951 Glutamine synthetase, beta-Grasp domain YS110_22010 PF00120 Glutamine synthetase, catalytic domain YS110_22020 PF00989 PAS fold YS110_22020 PF00512 His Kinase A (phospho-acceptor) domain YS110_22020 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YS110_22025 PF00158 Sigma-54 interaction domain YS110_22025 PF00072 Response regulator receiver domain YS110_22025 PF02954 Bacterial regulatory protein, Fis family YS110_22030 PF13231 Dolichyl-phosphate-mannose-protein mannosyltransferase YS110_22035 PF03372 Endonuclease/Exonuclease/phosphatase family YS110_22050 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YS110_22050 PF00204 DNA gyrase B YS110_22050 PF01751 Toprim domain YS110_22050 PF00986 DNA gyrase B subunit, carboxyl terminus YS110_22055 PF00521 DNA gyrase/topoisomerase IV, subunit A YS110_22060 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain YS110_22060 PF02203 Tar ligand binding domain homologue YS110_22060 PF00672 HAMP domain YS110_22065 PF00672 HAMP domain YS110_22065 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain YS110_22065 PF02203 Tar ligand binding domain homologue YS110_22075 PF03772 Competence protein YS110_22075 PF00753 Metallo-beta-lactamase superfamily YS110_22085 PF01272 Transcription elongation factor, GreA/GreB, C-term YS110_22085 PF14760 Rnk N-terminus YS110_22090 PF08019 Phosphoethanolamine transferase EptA/EptB YS110_22090 PF00884 Sulfatase YS110_22095 PF00756 Putative esterase YS110_22100 PF00330 Aconitase family (aconitate hydratase) YS110_22100 PF11791 Aconitate B N-terminal domain YS110_22100 PF06434 Aconitate hydratase 2 N-terminus YS110_22120 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain YS110_22120 PF00056 lactate/malate dehydrogenase, NAD binding domain YS110_22125 PF07702 UTRA domain YS110_22125 PF00392 Bacterial regulatory proteins, gntR family YS110_22140 PF00890 FAD binding domain YS110_22140 PF02910 Fumarate reductase flavoprotein C-term YS110_22145 PF13085 2Fe-2S iron-sulfur cluster binding domain YS110_22150 PF03937 Flavinator of succinate dehydrogenase YS110_22155 PF00285 Citrate synthase, C-terminal domain YS110_22165 PF03472 Autoinducer binding domain YS110_22165 PF00196 Bacterial regulatory proteins, luxR family YS110_22170 PF03472 Autoinducer binding domain YS110_22170 PF00196 Bacterial regulatory proteins, luxR family YS110_22180 PF00765 Autoinducer synthase YS110_22195 PF05785 Rho-activating domain of cytotoxic necrotizing factor YS110_22195 PF18807 Tripartite Tc toxins repeat YS110_22210 PF05593 RHS Repeat YS110_22235 PF03576 Peptidase family S58 YS110_22260 PF00403 Heavy-metal-associated domain YS110_22265 PF00376 MerR family regulatory protein YS110_22265 PF09278 MerR, DNA binding YS110_22285 PF02541 Ppx/GppA phosphatase family YS110_22295 PF03976 Polyphosphate kinase 2 (PPK2) YS110_22300 PF12849 PBP superfamily domain YS110_22305 PF00528 Binding-protein-dependent transport system inner membrane component YS110_22310 PF00528 Binding-protein-dependent transport system inner membrane component YS110_22315 PF00005 ABC transporter YS110_22320 PF01895 PhoU domain YS110_22325 PF00486 Transcriptional regulatory protein, C terminal YS110_22325 PF00072 Response regulator receiver domain YS110_22330 PF11808 Phosphate regulon sensor protein PhoR YS110_22330 PF00989 PAS fold YS110_22330 PF00512 His Kinase A (phospho-acceptor) domain YS110_22330 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YS110_22335 PF01548 Transposase YS110_22335 PF02371 Transposase IS116/IS110/IS902 family YS110_22345 PF03743 Bacterial conjugation TrbI-like protein YS110_22355 PF13614 AAA domain YS110_22360 PF02195 ParB-like nuclease domain YS110_22360 PF17762 HTH domain found in ParB protein YS110_22370 PF10134 Replication initiator protein A YS110_22455 PF02534 Type IV secretory system Conjugative DNA transfer YS110_22475 PF00565 Staphylococcal nuclease homologue YS110_22545 PF00691 OmpA family YS110_22550 PF01464 Transglycosylase SLT domain YS110_22555 PF00795 Carbon-nitrogen hydrolase YS110_22560 PF01751 Toprim domain YS110_22560 PF01131 DNA topoisomerase YS110_22570 PF10502 Signal peptidase, peptidase S26 YS110_22575 PF00436 Single-strand binding protein family YS110_22580 PF02534 Type IV secretory system Conjugative DNA transfer YS110_22610 PF03389 MobA/MobL family YS110_22610 PF16793 RepB DNA-primase from phage plasmid YS110_22615 PF00437 Type II/IV secretion system protein YS110_22620 PF04956 TrbC/VIRB2 family YS110_22625 PF05101 Type IV secretory pathway, VirB3-like protein YS110_22630 PF03135 CagE, TrbE, VirB family, component of type IV transporter system YS110_22650 PF04335 VirB8 protein