locus-tag class description AciM339_0003 PF01132 Elongation factor P (EF-P) OB domain AciM339_0003 PF08207 Elongation factor P (EF-P) KOW-like domain AciM339_0003 PF09285 Elongation factor P, C-terminal AciM339_0004 PF00491 Arginase family AciM339_0006 PF00437 Type II/IV secretion system protein AciM339_0012 PF01938 TRAM domain AciM339_0012 PF05958 tRNA (Uracil-5-)-methyltransferase AciM339_0021 PF03176 MMPL family AciM339_0023 PF01546 Peptidase family M20/M25/M40 AciM339_0023 PF07687 Peptidase dimerisation domain AciM339_0030 PF12706 Beta-lactamase superfamily domain AciM339_0031 PF05175 Methyltransferase small domain AciM339_0039 PF01384 Phosphate transporter family AciM339_0041 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain AciM339_0041 PF01276 Orn/Lys/Arg decarboxylase, major domain AciM339_0042 PF00696 Amino acid kinase family AciM339_0045 PF07690 Major Facilitator Superfamily AciM339_0046 PF00588 SpoU rRNA Methylase family AciM339_0051 PF06745 KaiC AciM339_0056 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain AciM339_0056 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain AciM339_0057 PF03129 Anticodon binding domain AciM339_0057 PF13393 Histidyl-tRNA synthetase AciM339_0058 PF01554 MatE AciM339_0060 PF02237 Biotin protein ligase C terminal domain AciM339_0060 PF08279 HTH domain AciM339_0060 PF03099 Biotin/lipoate A/B protein ligase family AciM339_0062 PF04760 Translation initiation factor IF-2, N-terminal region AciM339_0062 PF11987 Translation-initiation factor 2 AciM339_0062 PF00009 Elongation factor Tu GTP binding domain AciM339_0063 PF01411 tRNA synthetases class II (A) AciM339_0063 PF02272 DHHA1 domain AciM339_0063 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain AciM339_0064 PF00860 Permease family AciM339_0065 PF00809 Pterin binding enzyme AciM339_0069 PF00924 Mechanosensitive ion channel AciM339_0070 PF03030 Inorganic H+ pyrophosphatase AciM339_0071 PF02001 Protein of unknown function DUF134 AciM339_0077 PF03484 tRNA synthetase B5 domain AciM339_0077 PF03483 B3/4 domain AciM339_0077 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain AciM339_0077 PF01588 Putative tRNA binding domain AciM339_0077 PF03147 Ferredoxin-fold anticodon binding domain AciM339_0079 PF12327 FtsZ family, C-terminal domain AciM339_0079 PF00091 Tubulin/FtsZ family, GTPase domain AciM339_0082 PF03104 DNA polymerase family B, exonuclease domain AciM339_0082 PF00136 DNA polymerase family B AciM339_0083 PF04055 Radical SAM superfamily AciM339_0085 PF02978 Signal peptide binding domain AciM339_0085 PF00448 SRP54-type protein, GTPase domain AciM339_0085 PF02881 SRP54-type protein, helical bundle domain AciM339_0086 PF03477 ATP cone domain AciM339_0086 PF00317 Ribonucleotide reductase, all-alpha domain AciM339_0086 PF02867 Ribonucleotide reductase, barrel domain AciM339_0091 PF02769 AIR synthase related protein, C-terminal domain AciM339_0091 PF00586 AIR synthase related protein, N-terminal domain AciM339_0091 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain AciM339_0094 PF01883 Iron-sulfur cluster assembly protein AciM339_0095 PF01885 RNA 2'-phosphotransferase, Tpt1 / KptA family AciM339_0097 PF01980 tRNA-methyltransferase O AciM339_0098 PF00155 Aminotransferase class I and II AciM339_0100 PF00753 Metallo-beta-lactamase superfamily AciM339_0100 PF16123 Hydroxyacylglutathione hydrolase C-terminus AciM339_0101 PF00293 NUDIX domain AciM339_0109 PF00128 Alpha amylase, catalytic domain AciM339_0109 PF02903 Alpha amylase, N-terminal ig-like domain AciM339_0109 PF00395 S-layer homology domain AciM339_0111 PF01931 Protein of unknown function DUF84 AciM339_0113 PF01435 Peptidase family M48 AciM339_0118 PF00155 Aminotransferase class I and II AciM339_0120 PF00821 Phosphoenolpyruvate carboxykinase C-terminal P-loop domain AciM339_0120 PF17297 Phosphoenolpyruvate carboxykinase N-terminal domain AciM339_0122 PF03009 Glycerophosphoryl diester phosphodiesterase family AciM339_0124 PF10417 C-terminal domain of 1-Cys peroxiredoxin AciM339_0124 PF00578 AhpC/TSA family AciM339_0125 PF00575 S1 RNA binding domain AciM339_0125 PF00773 RNB domain AciM339_0125 PF08206 Ribonuclease B OB domain AciM339_0125 PF17876 Cold shock domain AciM339_0127 PF01880 Desulfoferrodoxin AciM339_0128 PF00210 Ferritin-like domain AciM339_0130 PF02915 Rubrerythrin AciM339_0131 PF00141 Peroxidase AciM339_0133 PF00578 AhpC/TSA family AciM339_0134 PF00258 Flavodoxin AciM339_0134 PF00753 Metallo-beta-lactamase superfamily AciM339_0135 PF00301 Rubredoxin AciM339_0137 PF00301 Rubredoxin AciM339_0137 PF01613 Flavin reductase like domain AciM339_0138 PF01037 Lrp/AsnC ligand binding domain AciM339_0139 PF17746 SfsA N-terminal OB domain AciM339_0139 PF03749 Sugar fermentation stimulation protein RE domain AciM339_0141 PF00293 NUDIX domain AciM339_0142 PF00091 Tubulin/FtsZ family, GTPase domain AciM339_0142 PF12327 FtsZ family, C-terminal domain AciM339_0145 PF03946 Ribosomal protein L11, N-terminal domain AciM339_0145 PF00298 Ribosomal protein L11, RNA binding domain AciM339_0146 PF00687 Ribosomal protein L1p/L10e family AciM339_0147 PF00466 Ribosomal protein L10 AciM339_0153 PF00005 ABC transporter AciM339_0153 PF12848 ABC transporter AciM339_0155 PF02142 MGS-like domain AciM339_0155 PF01808 AICARFT/IMPCHase bienzyme AciM339_0158 PF00133 tRNA synthetases class I (I, L, M and V) AciM339_0158 PF08264 Anticodon-binding domain of tRNA AciM339_0159 PF01336 OB-fold nucleic acid binding domain AciM339_0159 PF00152 tRNA synthetases class II (D, K and N) AciM339_0160 PF00005 ABC transporter AciM339_0160 PF08352 Oligopeptide/dipeptide transporter, C-terminal region AciM339_0161 PF08352 Oligopeptide/dipeptide transporter, C-terminal region AciM339_0161 PF00005 ABC transporter AciM339_0162 PF12911 N-terminal TM domain of oligopeptide transport permease C AciM339_0162 PF00528 Binding-protein-dependent transport system inner membrane component AciM339_0163 PF00528 Binding-protein-dependent transport system inner membrane component AciM339_0168 PF00156 Phosphoribosyl transferase domain AciM339_0169 PF00156 Phosphoribosyl transferase domain AciM339_0172 PF02899 Phage integrase, N-terminal SAM-like domain AciM339_0172 PF00589 Phage integrase family AciM339_0182 PF00239 Resolvase, N terminal domain AciM339_0182 PF02796 Helix-turn-helix domain of resolvase AciM339_0205 PF02899 Phage integrase, N-terminal SAM-like domain AciM339_0205 PF00589 Phage integrase family AciM339_0214 PF02796 Helix-turn-helix domain of resolvase AciM339_0214 PF00239 Resolvase, N terminal domain AciM339_0236 PF01467 Cytidylyltransferase-like AciM339_0236 PF00293 NUDIX domain AciM339_0237 PF02464 Competence-damaged protein AciM339_0237 PF00994 Probable molybdopterin binding domain AciM339_0237 PF18146 Damage-inducible protein CinA KH domain AciM339_0238 PF01180 Dihydroorotate dehydrogenase AciM339_0239 PF00970 Oxidoreductase FAD-binding domain AciM339_0239 PF10418 Iron-sulfur cluster binding domain of dihydroorotate dehydrogenase B AciM339_0239 PF00175 Oxidoreductase NAD-binding domain AciM339_0240 PF00005 ABC transporter AciM339_0245 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain AciM339_0247 PF03372 Endonuclease/Exonuclease/phosphatase family AciM339_0249 PF03989 DNA gyrase C-terminal domain, beta-propeller AciM339_0249 PF00521 DNA gyrase/topoisomerase IV, subunit A AciM339_0250 PF01751 Toprim domain AciM339_0250 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AciM339_0250 PF00986 DNA gyrase B subunit, carboxyl terminus AciM339_0250 PF00204 DNA gyrase B AciM339_0254 PF00005 ABC transporter AciM339_0256 PF01068 ATP dependent DNA ligase domain AciM339_0256 PF04675 DNA ligase N terminus AciM339_0256 PF04679 ATP dependent DNA ligase C terminal region AciM339_0258 PF00361 Proton-conducting membrane transporter AciM339_0259 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit AciM339_0260 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit AciM339_0261 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus AciM339_0261 PF00361 Proton-conducting membrane transporter AciM339_0263 PF00146 NADH dehydrogenase AciM339_0264 PF01314 Aldehyde ferredoxin oxidoreductase, domains 2 & 3 AciM339_0264 PF02730 Aldehyde ferredoxin oxidoreductase, N-terminal domain AciM339_0267 PF01979 Amidohydrolase family AciM339_0268 PF01568 Molydopterin dinucleotide binding domain AciM339_0268 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region AciM339_0268 PF00384 Molybdopterin oxidoreductase AciM339_0268 PF04879 Molybdopterin oxidoreductase Fe4S4 domain AciM339_0268 PF12838 4Fe-4S dicluster domain AciM339_0269 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit AciM339_0269 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region AciM339_0269 PF10531 SLBB domain AciM339_0273 PF00009 Elongation factor Tu GTP binding domain AciM339_0273 PF09106 Elongation factor SelB, winged helix AciM339_0273 PF09107 Elongation factor SelB, winged helix AciM339_0273 PF03144 Elongation factor Tu domain 2 AciM339_0273 PF09105 Elongation factor SelB, winged helix AciM339_0281 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain AciM339_0281 PF18262 Phe-tRNA synthetase beta subunit B1 domain AciM339_0281 PF03484 tRNA synthetase B5 domain AciM339_0282 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle AciM339_0283 PF00534 Glycosyl transferases group 1 AciM339_0283 PF13439 Glycosyltransferase Family 4 AciM339_0284 PF00117 Glutamine amidotransferase class-I AciM339_0284 PF06418 CTP synthase N-terminus AciM339_0286 PF05189 RNA 3'-terminal phosphate cyclase (RTC), insert domain AciM339_0286 PF01137 RNA 3'-terminal phosphate cyclase AciM339_0287 PF01694 Rhomboid family AciM339_0288 PF01964 Radical SAM ThiC family AciM339_0290 PF02649 Type I GTP cyclohydrolase folE2 AciM339_0291 PF01048 Phosphorylase superfamily AciM339_0295 PF01040 UbiA prenyltransferase family AciM339_0296 PF01884 PcrB family AciM339_0299 PF01171 PP-loop family AciM339_0300 PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase AciM339_0304 PF00398 Ribosomal RNA adenine dimethylase AciM339_0307 PF00919 Uncharacterized protein family UPF0004 AciM339_0307 PF01938 TRAM domain AciM339_0307 PF04055 Radical SAM superfamily AciM339_0308 PF01300 Telomere recombination AciM339_0309 PF00557 Metallopeptidase family M24 AciM339_0316 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase AciM339_0317 PF00294 pfkB family carbohydrate kinase AciM339_0317 PF01467 Cytidylyltransferase-like AciM339_0319 PF00885 6,7-dimethyl-8-ribityllumazine synthase AciM339_0327 PF00483 Nucleotidyl transferase AciM339_0328 PF13186 Iron-sulfur cluster-binding domain AciM339_0328 PF04055 Radical SAM superfamily AciM339_0330 PF00571 CBS domain AciM339_0330 PF00478 IMP dehydrogenase / GMP reductase domain AciM339_0331 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) AciM339_0331 PF03129 Anticodon binding domain AciM339_0333 PF01370 NAD dependent epimerase/dehydratase family AciM339_0334 PF00155 Aminotransferase class I and II AciM339_0337 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) AciM339_0337 PF09180 Prolyl-tRNA synthetase, C-terminal AciM339_0337 PF03129 Anticodon binding domain AciM339_0340 PF01070 FMN-dependent dehydrogenase AciM339_0341 PF00696 Amino acid kinase family AciM339_0343 PF01523 Putative modulator of DNA gyrase AciM339_0344 PF01523 Putative modulator of DNA gyrase AciM339_0346 PF00221 Aromatic amino acid lyase AciM339_0349 PF06745 KaiC AciM339_0353 PF00456 Transketolase, thiamine diphosphate binding domain AciM339_0354 PF02779 Transketolase, pyrimidine binding domain AciM339_0354 PF02780 Transketolase, C-terminal domain AciM339_0355 PF00923 Transaldolase/Fructose-6-phosphate aldolase AciM339_0357 PF01048 Phosphorylase superfamily AciM339_0358 PF00999 Sodium/hydrogen exchanger family AciM339_0360 PF02441 Flavoprotein AciM339_0361 PF02347 Glycine cleavage system P-protein AciM339_0362 PF02347 Glycine cleavage system P-protein AciM339_0364 PF02540 NAD synthase AciM339_0364 PF00795 Carbon-nitrogen hydrolase AciM339_0366 PF00330 Aconitase family (aconitate hydratase) AciM339_0367 PF01037 Lrp/AsnC ligand binding domain AciM339_0375 PF00589 Phage integrase family AciM339_0375 PF02899 Phage integrase, N-terminal SAM-like domain AciM339_0377 PF01242 6-pyruvoyl tetrahydropterin synthase AciM339_0380 PF01725 Ham1 family AciM339_0381 PF00814 Glycoprotease family AciM339_0390 PF01914 MarC family integral membrane protein AciM339_0396 PF01380 SIS domain AciM339_0398 PF01268 Formate--tetrahydrofolate ligase AciM339_0399 PF00696 Amino acid kinase family AciM339_0400 PF00464 Serine hydroxymethyltransferase AciM339_0410 PF00719 Inorganic pyrophosphatase AciM339_0416 PF00528 Binding-protein-dependent transport system inner membrane component AciM339_0416 PF12911 N-terminal TM domain of oligopeptide transport permease C AciM339_0417 PF00152 tRNA synthetases class II (D, K and N) AciM339_0417 PF01336 OB-fold nucleic acid binding domain AciM339_0419 PF07690 Major Facilitator Superfamily AciM339_0425 PF03600 Citrate transporter AciM339_0427 PF00162 Phosphoglycerate kinase AciM339_0428 PF01544 CorA-like Mg2+ transporter protein AciM339_0429 PF00117 Glutamine amidotransferase class-I AciM339_0429 PF00958 GMP synthase C terminal domain AciM339_0429 PF02540 NAD synthase AciM339_0431 PF02310 B12 binding domain AciM339_0431 PF04055 Radical SAM superfamily AciM339_0432 PF06463 Molybdenum Cofactor Synthesis C AciM339_0432 PF04055 Radical SAM superfamily AciM339_0438 PF07992 Pyridine nucleotide-disulphide oxidoreductase AciM339_0438 PF00724 NADH:flavin oxidoreductase / NADH oxidase family AciM339_0441 PF13660 Domain of unknown function (DUF4147) AciM339_0441 PF05161 MOFRL family AciM339_0445 PF14489 QueF-like protein AciM339_0446 PF02615 Malate/L-lactate dehydrogenase AciM339_0448 PF01048 Phosphorylase superfamily AciM339_0451 PF03551 Transcriptional regulator PadR-like family AciM339_0456 PF06560 Glucose-6-phosphate isomerase (GPI) AciM339_0457 PF12327 FtsZ family, C-terminal domain AciM339_0457 PF00091 Tubulin/FtsZ family, GTPase domain AciM339_0461 PF00155 Aminotransferase class I and II AciM339_0468 PF07992 Pyridine nucleotide-disulphide oxidoreductase AciM339_0468 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain AciM339_0473 PF08453 Peptidase family M9 N-terminal AciM339_0473 PF18496 Collagenase G catalytic helper subdomain AciM339_0473 PF01752 Collagenase AciM339_0479 PF01702 Queuine tRNA-ribosyltransferase AciM339_0480 PF13419 Haloacid dehalogenase-like hydrolase AciM339_0493 PF06745 KaiC AciM339_0495 PF06745 KaiC AciM339_0497 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) AciM339_0499 PF02677 Epoxyqueuosine reductase QueH AciM339_0502 PF02386 Cation transport protein AciM339_0503 PF02254 TrkA-N domain AciM339_0503 PF02080 TrkA-C domain AciM339_0508 PF06071 Protein of unknown function (DUF933) AciM339_0508 PF01926 50S ribosome-binding GTPase AciM339_0510 PF13685 Iron-containing alcohol dehydrogenase AciM339_0514 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain AciM339_0514 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain AciM339_0515 PF00480 ROK family AciM339_0519 PF02511 Thymidylate synthase complementing protein AciM339_0520 PF10609 NUBPL iron-transfer P-loop NTPase AciM339_0523 PF00535 Glycosyl transferase family 2 AciM339_0524 PF00535 Glycosyl transferase family 2 AciM339_0526 PF06463 Molybdenum Cofactor Synthesis C AciM339_0526 PF04055 Radical SAM superfamily AciM339_0531 PF07690 Major Facilitator Superfamily AciM339_0537 PF05496 Holliday junction DNA helicase RuvB P-loop domain AciM339_0537 PF05491 RuvB C-terminal winged helix domain AciM339_0537 PF17864 RuvB AAA lid domain AciM339_0540 PF16200 C-terminal region of band_7 AciM339_0540 PF01145 SPFH domain / Band 7 family AciM339_0543 PF00270 DEAD/DEAH box helicase AciM339_0543 PF00271 Helicase conserved C-terminal domain AciM339_0544 PF01862 Pyruvoyl-dependent arginine decarboxylase (PvlArgDC) AciM339_0545 PF01861 Branched-chain polyamine synthase A C-terminal domain AciM339_0546 PF02675 S-adenosylmethionine decarboxylase AciM339_0547 PF07992 Pyridine nucleotide-disulphide oxidoreductase AciM339_0547 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain AciM339_0552 PF01367 5'-3' exonuclease, C-terminal SAM fold AciM339_0552 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain AciM339_0552 PF00476 DNA polymerase family A AciM339_0552 PF09281 Taq polymerase, exonuclease AciM339_0555 PF00731 AIR carboxylase AciM339_0556 PF00958 GMP synthase C terminal domain AciM339_0556 PF00117 Glutamine amidotransferase class-I AciM339_0556 PF02568 Thiamine biosynthesis protein (ThiI) AciM339_0560 PF00551 Formyl transferase AciM339_0561 PF00834 Ribulose-phosphate 3 epimerase family AciM339_0562 PF00294 pfkB family carbohydrate kinase AciM339_0564 PF00005 ABC transporter AciM339_0571 PF02163 Peptidase family M50 AciM339_0572 PF01571 Aminomethyltransferase folate-binding domain AciM339_0572 PF08669 Glycine cleavage T-protein C-terminal barrel domain AciM339_0573 PF01174 SNO glutamine amidotransferase family AciM339_0577 PF06745 KaiC AciM339_0578 PF00152 tRNA synthetases class II (D, K and N) AciM339_0578 PF01336 OB-fold nucleic acid binding domain AciM339_0581 PF01183 Glycosyl hydrolases family 25 AciM339_0583 PF00999 Sodium/hydrogen exchanger family AciM339_0584 PF00202 Aminotransferase class-III AciM339_0590 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family AciM339_0591 PF02223 Thymidylate kinase AciM339_0592 PF04493 Endonuclease V AciM339_0593 PF01205 Uncharacterized protein family UPF0029 AciM339_0593 PF09186 Domain of unknown function (DUF1949) AciM339_0595 PF01321 Creatinase/Prolidase N-terminal domain AciM339_0595 PF00557 Metallopeptidase family M24 AciM339_0598 PF00072 Response regulator receiver domain AciM339_0603 PF01259 SAICAR synthetase AciM339_0604 PF06745 KaiC AciM339_0614 PF17910 FeoB cytosolic helical domain AciM339_0614 PF07670 Nucleoside recognition AciM339_0614 PF02421 Ferrous iron transport protein B AciM339_0614 PF04023 FeoA domain AciM339_0614 PF07664 Ferrous iron transport protein B C terminus AciM339_0616 PF01950 Fructose-1,6-bisphosphatase AciM339_0618 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain AciM339_0618 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain AciM339_0620 PF09190 DALR domain AciM339_0620 PF01406 tRNA synthetases class I (C) catalytic domain AciM339_0621 PF02730 Aldehyde ferredoxin oxidoreductase, N-terminal domain AciM339_0621 PF01314 Aldehyde ferredoxin oxidoreductase, domains 2 & 3 AciM339_0623 PF02074 Carboxypeptidase Taq (M32) metallopeptidase AciM339_0625 PF00696 Amino acid kinase family AciM339_0626 PF00216 Bacterial DNA-binding protein AciM339_0631 PF01255 Putative undecaprenyl diphosphate synthase AciM339_0632 PF01872 RibD C-terminal domain AciM339_0635 PF01138 3' exoribonuclease family, domain 1 AciM339_0635 PF03725 3' exoribonuclease family, domain 2 AciM339_0637 PF08352 Oligopeptide/dipeptide transporter, C-terminal region AciM339_0637 PF00005 ABC transporter AciM339_0638 PF08352 Oligopeptide/dipeptide transporter, C-terminal region AciM339_0638 PF00005 ABC transporter AciM339_0641 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle AciM339_0642 PF00011 Hsp20/alpha crystallin family AciM339_0643 PF17862 AAA+ lid domain AciM339_0643 PF06480 FtsH Extracellular AciM339_0643 PF01434 Peptidase family M41 AciM339_0643 PF00004 ATPase family associated with various cellular activities (AAA) AciM339_0645 PF01037 Lrp/AsnC ligand binding domain AciM339_0646 PF00271 Helicase conserved C-terminal domain AciM339_0646 PF00270 DEAD/DEAH box helicase AciM339_0646 PF08148 DSHCT (NUC185) domain AciM339_0647 PF08459 UvrC Helix-hairpin-helix N-terminal AciM339_0647 PF02151 UvrB/uvrC motif AciM339_0647 PF12826 Helix-hairpin-helix motif AciM339_0647 PF01541 GIY-YIG catalytic domain AciM339_0648 PF00005 ABC transporter AciM339_0650 PF00709 Adenylosuccinate synthetase AciM339_0652 PF00326 Prolyl oligopeptidase family AciM339_0652 PF07676 WD40-like Beta Propeller Repeat AciM339_0655 PF01899 Na+/H+ ion antiporter subunit AciM339_0656 PF04066 Multiple resistance and pH regulation protein F (MrpF / PhaF) AciM339_0659 PF13244 Domain of unknown function (DUF4040) AciM339_0659 PF04039 Domain related to MnhB subunit of Na+/H+ antiporter AciM339_0659 PF00361 Proton-conducting membrane transporter AciM339_0659 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus AciM339_0660 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L AciM339_0661 PF00361 Proton-conducting membrane transporter AciM339_0662 PF00361 Proton-conducting membrane transporter AciM339_0663 PF00146 NADH dehydrogenase AciM339_0664 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit AciM339_0665 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit AciM339_0666 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit AciM339_0667 PF12838 4Fe-4S dicluster domain AciM339_0671 PF00106 short chain dehydrogenase AciM339_0678 PF00633 Helix-hairpin-helix motif AciM339_0678 PF00730 HhH-GPD superfamily base excision DNA repair protein AciM339_0678 PF10576 Iron-sulfur binding domain of endonuclease III AciM339_0682 PF02445 Quinolinate synthetase A protein AciM339_0683 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain AciM339_0683 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain AciM339_0686 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain AciM339_0686 PF00391 PEP-utilising enzyme, mobile domain AciM339_0686 PF02896 PEP-utilising enzyme, TIM barrel domain AciM339_0689 PF08240 Alcohol dehydrogenase GroES-like domain AciM339_0692 PF01256 Carbohydrate kinase AciM339_0692 PF03853 YjeF-related protein N-terminus AciM339_0694 PF01435 Peptidase family M48 AciM339_0701 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) AciM339_0701 PF02403 Seryl-tRNA synthetase N-terminal domain AciM339_0702 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region AciM339_0705 PF07726 ATPase family associated with various cellular activities (AAA) AciM339_0705 PF17863 AAA lid domain AciM339_0715 PF13495 Phage integrase, N-terminal SAM-like domain AciM339_0715 PF00589 Phage integrase family AciM339_0717 PF00108 Thiolase, N-terminal domain AciM339_0717 PF02803 Thiolase, C-terminal domain AciM339_0718 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III AciM339_0718 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal AciM339_0719 PF00005 ABC transporter AciM339_0720 PF01458 Uncharacterized protein family (UPF0051) AciM339_0721 PF01751 Toprim domain AciM339_0721 PF01131 DNA topoisomerase AciM339_0723 PF01297 Zinc-uptake complex component A periplasmic AciM339_0725 PF00591 Glycosyl transferase family, a/b domain AciM339_0725 PF07831 Pyrimidine nucleoside phosphorylase C-terminal domain AciM339_0725 PF02885 Glycosyl transferase family, helical bundle domain AciM339_0726 PF01008 Initiation factor 2 subunit family AciM339_0729 PF00478 IMP dehydrogenase / GMP reductase domain AciM339_0729 PF00571 CBS domain AciM339_0732 PF00999 Sodium/hydrogen exchanger family AciM339_0737 PF13607 Succinyl-CoA ligase like flavodoxin domain AciM339_0737 PF13380 CoA binding domain AciM339_0737 PF00583 Acetyltransferase (GNAT) family AciM339_0741 PF00005 ABC transporter AciM339_0741 PF12399 Branched-chain amino acid ATP-binding cassette transporter AciM339_0744 PF00583 Acetyltransferase (GNAT) family AciM339_0744 PF13380 CoA binding domain AciM339_0744 PF13607 Succinyl-CoA ligase like flavodoxin domain AciM339_0745 PF13380 CoA binding domain AciM339_0745 PF13607 Succinyl-CoA ligase like flavodoxin domain AciM339_0745 PF00583 Acetyltransferase (GNAT) family AciM339_0749 PF02163 Peptidase family M50 AciM339_0749 PF00571 CBS domain AciM339_0755 PF17284 Spermidine synthase tetramerisation domain AciM339_0763 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain AciM339_0764 PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg AciM339_0764 PF17147 Pyruvate:ferredoxin oxidoreductase core domain II AciM339_0767 PF02005 N2,N2-dimethylguanosine tRNA methyltransferase AciM339_0768 PF03266 NTPase AciM339_0770 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase AciM339_0773 PF07690 Major Facilitator Superfamily AciM339_0774 PF03453 MoeA N-terminal region (domain I and II) AciM339_0774 PF03454 MoeA C-terminal region (domain IV) AciM339_0774 PF00994 Probable molybdopterin binding domain AciM339_0778 PF00483 Nucleotidyl transferase AciM339_0779 PF01380 SIS domain AciM339_0781 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II AciM339_0781 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I AciM339_0781 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain AciM339_0781 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III AciM339_0782 PF00962 Adenosine/AMP deaminase AciM339_0783 PF14602 Hexapeptide repeat of succinyl-transferase AciM339_0783 PF00132 Bacterial transferase hexapeptide (six repeats) AciM339_0783 PF12804 MobA-like NTP transferase domain AciM339_0785 PF13520 Amino acid permease AciM339_0787 PF01370 NAD dependent epimerase/dehydratase family AciM339_0788 PF00005 ABC transporter AciM339_0791 PF00535 Glycosyl transferase family 2 AciM339_0791 PF18674 TarS beta-glycosyltransferase C-terminal domain 1 AciM339_0793 PF04464 CDP-Glycerol:Poly(glycerophosphate) glycerophosphotransferase AciM339_0794 PF00483 Nucleotidyl transferase AciM339_0795 PF00733 Asparagine synthase AciM339_0795 PF13537 Glutamine amidotransferase domain AciM339_0796 PF13173 AAA domain AciM339_0796 PF13635 Domain of unknown function (DUF4143) AciM339_0803 PF13439 Glycosyltransferase Family 4 AciM339_0803 PF00534 Glycosyl transferases group 1 AciM339_0805 PF13439 Glycosyltransferase Family 4 AciM339_0805 PF00534 Glycosyl transferases group 1 AciM339_0806 PF02350 UDP-N-acetylglucosamine 2-epimerase AciM339_0808 PF02223 Thymidylate kinase AciM339_0811 PF01820 D-ala D-ala ligase N-terminus AciM339_0811 PF07478 D-ala D-ala ligase C-terminus AciM339_0813 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 AciM339_0813 PF00953 Glycosyl transferase family 4 AciM339_0814 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain AciM339_0814 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain AciM339_0814 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain AciM339_0815 PF01408 Oxidoreductase family, NAD-binding Rossmann fold AciM339_0815 PF02894 Oxidoreductase family, C-terminal alpha/beta domain AciM339_0816 PF00132 Bacterial transferase hexapeptide (six repeats) AciM339_0817 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family AciM339_0818 PF02350 UDP-N-acetylglucosamine 2-epimerase AciM339_0825 PF02245 Methylpurine-DNA glycosylase (MPG) AciM339_0830 PF13419 Haloacid dehalogenase-like hydrolase AciM339_0835 PF08351 Domain of unknown function (DUF1726) AciM339_0835 PF13718 GNAT acetyltransferase 2 AciM339_0835 PF05127 Helicase AciM339_0835 PF17176 tRNA-binding domain AciM339_0837 PF08704 tRNA methyltransferase complex GCD14 subunit AciM339_0839 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain AciM339_0839 PF13378 Enolase C-terminal domain-like AciM339_0842 PF14572 Phosphoribosyl synthetase-associated domain AciM339_0842 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase AciM339_0844 PF01842 ACT domain AciM339_0844 PF03315 Serine dehydratase beta chain AciM339_0845 PF03313 Serine dehydratase alpha chain AciM339_0846 PF00689 Cation transporting ATPase, C-terminus AciM339_0846 PF00690 Cation transporter/ATPase, N-terminus AciM339_0847 PF02146 Sir2 family AciM339_0849 PF00694 Aconitase C-terminal domain AciM339_0850 PF00270 DEAD/DEAH box helicase AciM339_0850 PF00271 Helicase conserved C-terminal domain AciM339_0850 PF08494 DEAD/H associated AciM339_0851 PF13307 Helicase C-terminal domain AciM339_0854 PF02558 Ketopantoate reductase PanE/ApbA AciM339_0854 PF08546 Ketopantoate reductase PanE/ApbA C terminal AciM339_0861 PF05496 Holliday junction DNA helicase RuvB P-loop domain AciM339_0861 PF05491 RuvB C-terminal winged helix domain AciM339_0861 PF17864 RuvB AAA lid domain AciM339_0862 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I AciM339_0862 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III AciM339_0862 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain AciM339_0862 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II AciM339_0863 PF01409 tRNA synthetases class II core domain (F) AciM339_0867 PF01138 3' exoribonuclease family, domain 1 AciM339_0867 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain AciM339_0867 PF03725 3' exoribonuclease family, domain 2 AciM339_0867 PF00575 S1 RNA binding domain AciM339_0867 PF00013 KH domain AciM339_0868 PF03725 3' exoribonuclease family, domain 2 AciM339_0868 PF01138 3' exoribonuclease family, domain 1 AciM339_0869 PF03725 3' exoribonuclease family, domain 2 AciM339_0869 PF01138 3' exoribonuclease family, domain 1 AciM339_0871 PF00583 Acetyltransferase (GNAT) family AciM339_0876 PF01546 Peptidase family M20/M25/M40 AciM339_0876 PF07687 Peptidase dimerisation domain AciM339_0879 PF02901 Pyruvate formate lyase-like AciM339_0879 PF01228 Glycine radical AciM339_0880 PF04055 Radical SAM superfamily AciM339_0881 PF00180 Isocitrate/isopropylmalate dehydrogenase AciM339_0881 PF03737 Aldolase/RraA AciM339_0885 PF02633 Creatinine amidohydrolase AciM339_0890 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain AciM339_0890 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain AciM339_0891 PF01119 DNA mismatch repair protein, C-terminal domain AciM339_0891 PF08676 MutL C terminal dimerisation domain AciM339_0892 PF01791 DeoC/LacD family aldolase AciM339_0894 PF08264 Anticodon-binding domain of tRNA AciM339_0894 PF00133 tRNA synthetases class I (I, L, M and V) AciM339_0896 PF02926 THUMP domain AciM339_0896 PF01170 Putative RNA methylase family UPF0020 AciM339_0904 PF01370 NAD dependent epimerase/dehydratase family AciM339_0919 PF00330 Aconitase family (aconitate hydratase) AciM339_0920 PF00694 Aconitase C-terminal domain AciM339_0921 PF13091 PLD-like domain AciM339_0921 PF13396 Phospholipase_D-nuclease N-terminal AciM339_0923 PF00005 ABC transporter AciM339_0926 PF00753 Metallo-beta-lactamase superfamily AciM339_0926 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain AciM339_0926 PF10996 Beta-Casp domain AciM339_0928 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AciM339_0928 PF00512 His Kinase A (phospho-acceptor) domain AciM339_0928 PF00672 HAMP domain AciM339_0929 PF03167 Uracil DNA glycosylase superfamily AciM339_0930 PF01883 Iron-sulfur cluster assembly protein AciM339_0931 PF01925 Sulfite exporter TauE/SafE AciM339_0933 PF01321 Creatinase/Prolidase N-terminal domain AciM339_0933 PF00557 Metallopeptidase family M24 AciM339_0936 PF01545 Cation efflux family AciM339_0936 PF16916 Dimerisation domain of Zinc Transporter AciM339_0938 PF00581 Rhodanese-like domain AciM339_0938 PF00899 ThiF family AciM339_0939 PF02581 Thiamine monophosphate synthase AciM339_0947 PF10672 S-adenosylmethionine-dependent methyltransferase AciM339_0947 PF02926 THUMP domain AciM339_0947 PF01170 Putative RNA methylase family UPF0020 AciM339_0948 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain AciM339_0948 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain AciM339_0949 PF03009 Glycerophosphoryl diester phosphodiesterase family AciM339_0953 PF01699 Sodium/calcium exchanger protein AciM339_0955 PF02811 PHP domain AciM339_0955 PF07733 Bacterial DNA polymerase III alpha NTPase domain AciM339_0955 PF17657 Bacterial DNA polymerase III alpha subunit finger domain AciM339_0955 PF14579 Helix-hairpin-helix motif AciM339_0956 PF08264 Anticodon-binding domain of tRNA AciM339_0956 PF09334 tRNA synthetases class I (M) AciM339_0957 PF01926 50S ribosome-binding GTPase AciM339_0957 PF09269 Domain of unknown function (DUF1967) AciM339_0957 PF01018 GTP1/OBG AciM339_0958 PF00749 tRNA synthetases class I (E and Q), catalytic domain AciM339_0960 PF07992 Pyridine nucleotide-disulphide oxidoreductase AciM339_0960 PF17806 Sarcosine oxidase A3 domain AciM339_0960 PF08669 Glycine cleavage T-protein C-terminal barrel domain AciM339_0960 PF01571 Aminomethyltransferase folate-binding domain AciM339_0963 PF01266 FAD dependent oxidoreductase AciM339_0966 PF00970 Oxidoreductase FAD-binding domain AciM339_0966 PF00175 Oxidoreductase NAD-binding domain AciM339_0966 PF10418 Iron-sulfur cluster binding domain of dihydroorotate dehydrogenase B AciM339_0967 PF07992 Pyridine nucleotide-disulphide oxidoreductase AciM339_0967 PF13247 4Fe-4S dicluster domain AciM339_0967 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster AciM339_0969 PF00175 Oxidoreductase NAD-binding domain AciM339_0969 PF10418 Iron-sulfur cluster binding domain of dihydroorotate dehydrogenase B AciM339_0971 PF00374 Nickel-dependent hydrogenase AciM339_0972 PF00459 Inositol monophosphatase family AciM339_0973 PF01513 ATP-NAD kinase AciM339_0977 PF00338 Ribosomal protein S10p/S20e AciM339_0978 PF00009 Elongation factor Tu GTP binding domain AciM339_0979 PF03144 Elongation factor Tu domain 2 AciM339_0979 PF00009 Elongation factor Tu GTP binding domain AciM339_0979 PF03764 Elongation factor G, domain IV AciM339_0979 PF14492 Elongation Factor G, domain II AciM339_0979 PF00679 Elongation factor G C-terminus AciM339_0980 PF00177 Ribosomal protein S7p/S5e AciM339_0982 PF01029 NusB family AciM339_0982 PF01189 16S rRNA methyltransferase RsmB/F AciM339_0987 PF01568 Molydopterin dinucleotide binding domain AciM339_0987 PF00384 Molybdopterin oxidoreductase AciM339_0987 PF04879 Molybdopterin oxidoreductase Fe4S4 domain AciM339_0988 PF01965 DJ-1/PfpI family AciM339_0989 PF00464 Serine hydroxymethyltransferase AciM339_0992 PF17147 Pyruvate:ferredoxin oxidoreductase core domain II AciM339_0992 PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg AciM339_0996 PF00224 Pyruvate kinase, barrel domain AciM339_0996 PF02887 Pyruvate kinase, alpha/beta domain AciM339_0996 PF00391 PEP-utilising enzyme, mobile domain AciM339_0998 PF00528 Binding-protein-dependent transport system inner membrane component AciM339_0999 PF00005 ABC transporter AciM339_1000 PF00528 Binding-protein-dependent transport system inner membrane component AciM339_1001 PF00497 Bacterial extracellular solute-binding proteins, family 3 AciM339_1004 PF01131 DNA topoisomerase AciM339_1004 PF00270 DEAD/DEAH box helicase AciM339_1004 PF17915 Reverse gyrase zinc finger AciM339_1004 PF01751 Toprim domain AciM339_1007 PF08241 Methyltransferase domain AciM339_1008 PF13086 AAA domain AciM339_1008 PF13087 AAA domain AciM339_1008 PF13195 Protein of unknown function (DUF4011) AciM339_1009 PF01351 Ribonuclease HII AciM339_1010 PF01209 ubiE/COQ5 methyltransferase family AciM339_1011 PF01018 GTP1/OBG AciM339_1011 PF09269 Domain of unknown function (DUF1967) AciM339_1011 PF01926 50S ribosome-binding GTPase AciM339_1012 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain AciM339_1012 PF07992 Pyridine nucleotide-disulphide oxidoreductase AciM339_1014 PF00132 Bacterial transferase hexapeptide (six repeats) AciM339_1017 PF00091 Tubulin/FtsZ family, GTPase domain AciM339_1017 PF12327 FtsZ family, C-terminal domain AciM339_1019 PF01139 tRNA-splicing ligase RtcB AciM339_1020 PF00909 Ammonium Transporter Family AciM339_1022 PF06857 Malonate decarboxylase delta subunit (MdcD) AciM339_1023 PF03328 HpcH/HpaI aldolase/citrate lyase family AciM339_1024 PF04223 Citrate lyase, alpha subunit (CitF) AciM339_1028 PF00380 Ribosomal protein S9/S16 AciM339_1029 PF00572 Ribosomal protein L13 AciM339_1030 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A AciM339_1034 PF00133 tRNA synthetases class I (I, L, M and V) AciM339_1034 PF13603 Leucyl-tRNA synthetase, Domain 2 AciM339_1034 PF09334 tRNA synthetases class I (M) AciM339_1034 PF08264 Anticodon-binding domain of tRNA AciM339_1036 PF01569 PAP2 superfamily AciM339_1037 PF01979 Amidohydrolase family AciM339_1038 PF00285 Citrate synthase, C-terminal domain AciM339_1039 PF00330 Aconitase family (aconitate hydratase) AciM339_1040 PF00694 Aconitase C-terminal domain AciM339_1042 PF18324 Hypothetical protein TT1725 AciM339_1042 PF00180 Isocitrate/isopropylmalate dehydrogenase AciM339_1045 PF00368 Hydroxymethylglutaryl-coenzyme A reductase AciM339_1046 PF00293 NUDIX domain AciM339_1050 PF02769 AIR synthase related protein, C-terminal domain AciM339_1050 PF00586 AIR synthase related protein, N-terminal domain AciM339_1052 PF01554 MatE AciM339_1056 PF04055 Radical SAM superfamily AciM339_1057 PF01871 AMMECR1 AciM339_1058 PF01979 Amidohydrolase family AciM339_1059 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain AciM339_1059 PF01411 tRNA synthetases class II (A) AciM339_1059 PF02272 DHHA1 domain AciM339_1065 PF07687 Peptidase dimerisation domain AciM339_1065 PF01546 Peptidase family M20/M25/M40 AciM339_1068 PF17147 Pyruvate:ferredoxin oxidoreductase core domain II AciM339_1068 PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg AciM339_1069 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain AciM339_1070 PF00282 Pyridoxal-dependent decarboxylase conserved domain AciM339_1071 PF00120 Glutamine synthetase, catalytic domain AciM339_1071 PF03951 Glutamine synthetase, beta-Grasp domain AciM339_1072 PF00155 Aminotransferase class I and II AciM339_1073 PF05343 M42 glutamyl aminopeptidase AciM339_1077 PF00370 FGGY family of carbohydrate kinases, N-terminal domain AciM339_1077 PF02782 FGGY family of carbohydrate kinases, C-terminal domain AciM339_1081 PF00579 tRNA synthetases class I (W and Y) AciM339_1083 PF12706 Beta-lactamase superfamily domain AciM339_1086 PF01266 FAD dependent oxidoreductase AciM339_1087 PF07992 Pyridine nucleotide-disulphide oxidoreductase AciM339_1089 PF00326 Prolyl oligopeptidase family AciM339_1089 PF07676 WD40-like Beta Propeller Repeat AciM339_1093 PF01416 tRNA pseudouridine synthase AciM339_1094 PF01230 HIT domain AciM339_1096 PF17391 Urocanase N-terminal domain AciM339_1096 PF01175 Urocanase Rossmann-like domain AciM339_1096 PF17392 Urocanase C-terminal domain AciM339_1098 PF00297 Ribosomal protein L3 AciM339_1100 PF00276 Ribosomal protein L23 AciM339_1101 PF03947 Ribosomal Proteins L2, C-terminal domain AciM339_1101 PF00181 Ribosomal Proteins L2, RNA binding domain AciM339_1102 PF00203 Ribosomal protein S19 AciM339_1103 PF00237 Ribosomal protein L22p/L17e AciM339_1104 PF00189 Ribosomal protein S3, C-terminal domain AciM339_1104 PF07650 KH domain AciM339_1105 PF00831 Ribosomal L29 protein AciM339_1107 PF00366 Ribosomal protein S17 AciM339_1108 PF00238 Ribosomal protein L14p/L23e AciM339_1109 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 AciM339_1109 PF00467 KOW motif AciM339_1111 PF00281 Ribosomal protein L5 AciM339_1111 PF00673 ribosomal L5P family C-terminus AciM339_1112 PF00253 Ribosomal protein S14p/S29e AciM339_1113 PF00410 Ribosomal protein S8 AciM339_1114 PF00347 Ribosomal protein L6 AciM339_1118 PF00333 Ribosomal protein S5, N-terminal domain AciM339_1118 PF03719 Ribosomal protein S5, C-terminal domain AciM339_1119 PF00327 Ribosomal protein L30p/L7e AciM339_1120 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A AciM339_1121 PF00344 SecY translocase AciM339_1124 PF02224 Cytidylate kinase AciM339_1132 PF01112 Asparaginase AciM339_1134 PF02754 Cysteine-rich domain AciM339_1135 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster AciM339_1135 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region AciM339_1135 PF07992 Pyridine nucleotide-disulphide oxidoreductase AciM339_1140 PF00890 FAD binding domain AciM339_1140 PF02910 Fumarate reductase flavoprotein C-term AciM339_1142 PF13183 4Fe-4S dicluster domain AciM339_1142 PF02589 LUD domain AciM339_1142 PF11870 Domain of unknown function (DUF3390) AciM339_1143 PF03949 Malic enzyme, NAD binding domain AciM339_1143 PF00390 Malic enzyme, N-terminal domain AciM339_1144 PF00549 CoA-ligase AciM339_1144 PF08442 ATP-grasp domain AciM339_1145 PF02629 CoA binding domain AciM339_1145 PF00549 CoA-ligase AciM339_1146 PF05681 Fumarate hydratase (Fumerase) AciM339_1147 PF05681 Fumarate hydratase (Fumerase) AciM339_1147 PF05683 Fumarase C-terminus AciM339_1148 PF00005 ABC transporter AciM339_1149 PF02361 Cobalt transport protein AciM339_1151 PF01891 Cobalt uptake substrate-specific transmembrane region AciM339_1151 PF13190 PDGLE domain AciM339_1153 PF08753 NikR C terminal nickel binding domain AciM339_1153 PF01402 Ribbon-helix-helix protein, copG family AciM339_1154 PF01899 Na+/H+ ion antiporter subunit AciM339_1155 PF04066 Multiple resistance and pH regulation protein F (MrpF / PhaF) AciM339_1156 PF03334 Na+/H+ antiporter subunit AciM339_1163 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit AciM339_1164 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit AciM339_1164 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit AciM339_1165 PF00374 Nickel-dependent hydrogenase AciM339_1165 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit AciM339_1165 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit AciM339_1166 PF00146 NADH dehydrogenase AciM339_1167 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit AciM339_1167 PF12838 4Fe-4S dicluster domain AciM339_1167 PF13375 RnfC Barrel sandwich hybrid domain AciM339_1168 PF10609 NUBPL iron-transfer P-loop NTPase AciM339_1170 PF02769 AIR synthase related protein, C-terminal domain AciM339_1170 PF00586 AIR synthase related protein, N-terminal domain AciM339_1171 PF07503 HypF finger AciM339_1171 PF01300 Telomere recombination AciM339_1171 PF17788 HypF Kae1-like domain AciM339_1171 PF00708 Acylphosphatase AciM339_1172 PF01924 Hydrogenase formation hypA family AciM339_1173 PF01455 HupF/HypC family AciM339_1176 PF00005 ABC transporter AciM339_1181 PF01039 Carboxyl transferase domain AciM339_1184 PF03977 Na+-transporting oxaloacetate decarboxylase beta subunit AciM339_1193 PF06470 SMC proteins Flexible Hinge Domain AciM339_1193 PF02463 RecF/RecN/SMC N terminal domain AciM339_1196 PF01434 Peptidase family M41 AciM339_1196 PF06480 FtsH Extracellular AciM339_1196 PF17862 AAA+ lid domain AciM339_1196 PF00004 ATPase family associated with various cellular activities (AAA) AciM339_1201 PF00156 Phosphoribosyl transferase domain AciM339_1208 PF17862 AAA+ lid domain AciM339_1208 PF01434 Peptidase family M41 AciM339_1208 PF00004 ATPase family associated with various cellular activities (AAA) AciM339_1208 PF06480 FtsH Extracellular AciM339_1217 PF01555 DNA methylase AciM339_1218 PF00580 UvrD/REP helicase N-terminal domain AciM339_1218 PF13361 UvrD-like helicase C-terminal domain AciM339_1221 PF17757 UvrB interaction domain AciM339_1221 PF03461 TRCF domain AciM339_1221 PF00271 Helicase conserved C-terminal domain AciM339_1221 PF00270 DEAD/DEAH box helicase AciM339_1221 PF02559 CarD-like/TRCF domain AciM339_1233 PF07992 Pyridine nucleotide-disulphide oxidoreductase AciM339_1237 PF00999 Sodium/hydrogen exchanger family AciM339_1241 PF04055 Radical SAM superfamily AciM339_1241 PF01938 TRAM domain AciM339_1241 PF00919 Uncharacterized protein family UPF0004 AciM339_1243 PF04055 Radical SAM superfamily AciM339_1244 PF07992 Pyridine nucleotide-disulphide oxidoreductase AciM339_1246 PF01979 Amidohydrolase family AciM339_1248 PF01941 S-adenosylmethionine synthetase (AdoMet synthetase) AciM339_1249 PF02547 Queuosine biosynthesis protein AciM339_1250 PF01967 MoaC family AciM339_1251 PF00994 Probable molybdopterin binding domain AciM339_1252 PF02127 Aminopeptidase I zinc metalloprotease (M18) AciM339_1253 PF01875 Memo-like protein AciM339_1254 PF00318 Ribosomal protein S2 AciM339_1255 PF00113 Enolase, C-terminal TIM barrel domain AciM339_1255 PF03952 Enolase, N-terminal domain AciM339_1257 PF03129 Anticodon binding domain AciM339_1257 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) AciM339_1257 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain AciM339_1260 PF00571 CBS domain AciM339_1260 PF00478 IMP dehydrogenase / GMP reductase domain AciM339_1263 PF08543 Phosphomethylpyrimidine kinase AciM339_1265 PF01470 Pyroglutamyl peptidase AciM339_1267 PF00857 Isochorismatase family AciM339_1269 PF00136 DNA polymerase family B AciM339_1269 PF03104 DNA polymerase family B, exonuclease domain AciM339_1271 PF00437 Type II/IV secretion system protein AciM339_1272 PF18073 Rubredoxin metal binding domain AciM339_1276 PF08544 GHMP kinases C terminal AciM339_1276 PF00288 GHMP kinases N terminal domain AciM339_1276 PF10509 Galactokinase galactose-binding signature AciM339_1281 PF01597 Glycine cleavage H-protein AciM339_1282 PF01728 FtsJ-like methyltransferase AciM339_1285 PF00485 Phosphoribulokinase / Uridine kinase family AciM339_1289 PF01025 GrpE AciM339_1290 PF00012 Hsp70 protein AciM339_1291 PF01556 DnaJ C terminal domain AciM339_1291 PF00226 DnaJ domain AciM339_1291 PF00684 DnaJ central domain AciM339_1292 PF03600 Citrate transporter AciM339_1297 PF01168 Alanine racemase, N-terminal domain AciM339_1299 PF01496 V-type ATPase 116kDa subunit family AciM339_1305 PF02874 ATP synthase alpha/beta family, beta-barrel domain AciM339_1305 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain AciM339_1306 PF00291 Pyridoxal-phosphate dependent enzyme AciM339_1307 PF02881 SRP54-type protein, helical bundle domain AciM339_1307 PF00448 SRP54-type protein, GTPase domain AciM339_1311 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle AciM339_1313 PF00528 Binding-protein-dependent transport system inner membrane component AciM339_1313 PF12911 N-terminal TM domain of oligopeptide transport permease C AciM339_1314 PF08352 Oligopeptide/dipeptide transporter, C-terminal region AciM339_1314 PF00005 ABC transporter AciM339_1315 PF08352 Oligopeptide/dipeptide transporter, C-terminal region AciM339_1315 PF00005 ABC transporter AciM339_1323 PF02361 Cobalt transport protein AciM339_1324 PF00005 ABC transporter AciM339_1326 PF01142 tRNA pseudouridine synthase D (TruD) AciM339_1327 PF00334 Nucleoside diphosphate kinase AciM339_1331 PF00091 Tubulin/FtsZ family, GTPase domain AciM339_1331 PF12327 FtsZ family, C-terminal domain AciM339_1332 PF07085 DRTGG domain AciM339_1332 PF02833 DHHA2 domain AciM339_1332 PF00571 CBS domain AciM339_1332 PF01368 DHH family AciM339_1333 PF01523 Putative modulator of DNA gyrase AciM339_1334 PF01523 Putative modulator of DNA gyrase AciM339_1336 PF00364 Biotin-requiring enzyme AciM339_1336 PF00682 HMGL-like AciM339_1336 PF02436 Conserved carboxylase domain AciM339_1340 PF01066 CDP-alcohol phosphatidyltransferase AciM339_1340 PF00483 Nucleotidyl transferase AciM339_1343 PF02934 GatB/GatE catalytic domain AciM339_1343 PF02637 GatB domain AciM339_1344 PF00710 Asparaginase, N-terminal AciM339_1344 PF17763 Glutaminase/Asparaginase C-terminal domain AciM339_1345 PF08494 DEAD/H associated AciM339_1345 PF00270 DEAD/DEAH box helicase AciM339_1345 PF00271 Helicase conserved C-terminal domain AciM339_1346 PF17864 RuvB AAA lid domain AciM339_1346 PF05491 RuvB C-terminal winged helix domain AciM339_1346 PF05496 Holliday junction DNA helicase RuvB P-loop domain AciM339_1347 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase AciM339_1347 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain AciM339_1349 PF13632 Glycosyl transferase family group 2 AciM339_1357 PF00512 His Kinase A (phospho-acceptor) domain AciM339_1357 PF18698 Histidine kinase sensor domain AciM339_1357 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AciM339_1357 PF00672 HAMP domain AciM339_1363 PF06463 Molybdenum Cofactor Synthesis C AciM339_1363 PF04055 Radical SAM superfamily AciM339_1364 PF00924 Mechanosensitive ion channel AciM339_1364 PF05552 Conserved TM helix AciM339_1365 PF12557 Cob(I)alamin adenosyltransferase N terminal AciM339_1365 PF02572 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP AciM339_1369 PF00692 dUTPase AciM339_1370 PF05192 MutS domain III AciM339_1370 PF05188 MutS domain II AciM339_1370 PF01624 MutS domain I AciM339_1370 PF00488 MutS domain V AciM339_1370 PF05190 MutS family domain IV AciM339_1377 PF00005 ABC transporter AciM339_1377 PF09383 NIL domain AciM339_1390 PF00486 Transcriptional regulatory protein, C terminal AciM339_1390 PF00072 Response regulator receiver domain AciM339_1392 PF02788 Ribulose bisphosphate carboxylase large chain, N-terminal domain AciM339_1392 PF00016 Ribulose bisphosphate carboxylase large chain, catalytic domain AciM339_1394 PF08671 Anti-repressor SinI AciM339_1394 PF01381 Helix-turn-helix AciM339_1397 PF00293 NUDIX domain AciM339_1397 PF13344 Haloacid dehalogenase-like hydrolase AciM339_1400 PF04983 RNA polymerase Rpb1, domain 3 AciM339_1400 PF04998 RNA polymerase Rpb1, domain 5 AciM339_1400 PF04997 RNA polymerase Rpb1, domain 1 AciM339_1400 PF05000 RNA polymerase Rpb1, domain 4 AciM339_1400 PF00623 RNA polymerase Rpb1, domain 2 AciM339_1401 PF04998 RNA polymerase Rpb1, domain 5 AciM339_1401 PF05000 RNA polymerase Rpb1, domain 4 AciM339_1401 PF04983 RNA polymerase Rpb1, domain 3 AciM339_1401 PF00623 RNA polymerase Rpb1, domain 2 AciM339_1401 PF04997 RNA polymerase Rpb1, domain 1 AciM339_1402 PF04563 RNA polymerase beta subunit AciM339_1402 PF04561 RNA polymerase Rpb2, domain 2 AciM339_1402 PF04565 RNA polymerase Rpb2, domain 3 AciM339_1402 PF10385 RNA polymerase beta subunit external 1 domain AciM339_1402 PF00562 RNA polymerase Rpb2, domain 6 AciM339_1402 PF04560 RNA polymerase Rpb2, domain 7 AciM339_1406 PF01219 Prokaryotic diacylglycerol kinase AciM339_1413 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain AciM339_1413 PF02844 Phosphoribosylglycinamide synthetase, N domain AciM339_1413 PF02843 Phosphoribosylglycinamide synthetase, C domain AciM339_1415 PF10143 2,3-bisphosphoglycerate-independent phosphoglycerate mutase AciM339_1415 PF01676 Metalloenzyme superfamily AciM339_1421 PF00270 DEAD/DEAH box helicase AciM339_1421 PF00271 Helicase conserved C-terminal domain AciM339_1421 PF12300 ATP-dependent RNA helicase RhlB AciM339_1430 PF02384 N-6 DNA Methylase AciM339_1430 PF12161 HsdM N-terminal domain AciM339_1431 PF08463 EcoEI R protein C-terminal AciM339_1431 PF00271 Helicase conserved C-terminal domain AciM339_1431 PF13588 Type I restriction enzyme R protein N terminus (HSDR_N) AciM339_1431 PF04851 Type III restriction enzyme, res subunit AciM339_1432 PF02742 Iron dependent repressor, metal binding and dimerisation domain AciM339_1432 PF01325 Iron dependent repressor, N-terminal DNA binding domain AciM339_1433 PF03099 Biotin/lipoate A/B protein ligase family AciM339_1435 PF13636 RNA-binding PUA-like domain of methyltransferase RsmF AciM339_1435 PF17125 N-terminal domain of 16S rRNA methyltransferase RsmF AciM339_1435 PF01189 16S rRNA methyltransferase RsmB/F AciM339_1437 PF02926 THUMP domain AciM339_1437 PF02568 Thiamine biosynthesis protein (ThiI) AciM339_1440 PF00474 Sodium:solute symporter family AciM339_1442 PF02730 Aldehyde ferredoxin oxidoreductase, N-terminal domain AciM339_1442 PF01314 Aldehyde ferredoxin oxidoreductase, domains 2 & 3 AciM339_1444 PF05958 tRNA (Uracil-5-)-methyltransferase AciM339_1444 PF01938 TRAM domain AciM339_1447 PF02748 Aspartate carbamoyltransferase regulatory chain, metal binding domain AciM339_1447 PF01948 Aspartate carbamoyltransferase regulatory chain, allosteric domain AciM339_1448 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain AciM339_1448 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain AciM339_1453 PF00348 Polyprenyl synthetase AciM339_1457 PF00005 ABC transporter AciM339_1458 PF01966 HD domain AciM339_1459 PF00118 TCP-1/cpn60 chaperonin family AciM339_1460 PF02590 Predicted SPOUT methyltransferase AciM339_1462 PF02971 Formiminotransferase domain AciM339_1462 PF07837 Formiminotransferase domain, N-terminal subdomain AciM339_1463 PF01411 tRNA synthetases class II (A) AciM339_1463 PF02272 DHHA1 domain AciM339_1463 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain AciM339_1464 PF01813 ATP synthase subunit D AciM339_1466 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family AciM339_1469 PF01554 MatE AciM339_1471 PF01171 PP-loop family AciM339_1474 PF01384 Phosphate transporter family AciM339_1475 PF00293 NUDIX domain AciM339_1479 PF00575 S1 RNA binding domain AciM339_1479 PF03725 3' exoribonuclease family, domain 2 AciM339_1479 PF01138 3' exoribonuclease family, domain 1 AciM339_1479 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain AciM339_1479 PF00013 KH domain AciM339_1482 PF01018 GTP1/OBG AciM339_1482 PF04055 Radical SAM superfamily AciM339_1482 PF01926 50S ribosome-binding GTPase AciM339_1483 PF02769 AIR synthase related protein, C-terminal domain AciM339_1483 PF00586 AIR synthase related protein, N-terminal domain AciM339_1486 PF02867 Ribonucleotide reductase, barrel domain AciM339_1486 PF03477 ATP cone domain AciM339_1486 PF00317 Ribonucleotide reductase, all-alpha domain AciM339_1487 PF00483 Nucleotidyl transferase AciM339_1488 PF10397 Adenylosuccinate lyase C-terminus AciM339_1488 PF00206 Lyase AciM339_1502 PF02730 Aldehyde ferredoxin oxidoreductase, N-terminal domain AciM339_1502 PF01314 Aldehyde ferredoxin oxidoreductase, domains 2 & 3 AciM339_1503 PF02540 NAD synthase AciM339_1507 PF00133 tRNA synthetases class I (I, L, M and V) AciM339_1507 PF08264 Anticodon-binding domain of tRNA AciM339_1510 PF09827 CRISPR associated protein Cas2 AciM339_1511 PF01867 CRISPR associated protein Cas1 AciM339_1513 PF18019 HD domain AciM339_1513 PF00270 DEAD/DEAH box helicase AciM339_1513 PF18395 Cas3 C-terminal domain AciM339_1520 PF13344 Haloacid dehalogenase-like hydrolase AciM339_1521 PF01557 Fumarylacetoacetate (FAA) hydrolase family AciM339_1527 PF00696 Amino acid kinase family AciM339_1529 PF00072 Response regulator receiver domain AciM339_1530 PF01507 Phosphoadenosine phosphosulfate reductase family AciM339_1533 PF03951 Glutamine synthetase, beta-Grasp domain AciM339_1533 PF00120 Glutamine synthetase, catalytic domain AciM339_1535 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain AciM339_1535 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain AciM339_1536 PF00266 Aminotransferase class-V AciM339_1539 PF00156 Phosphoribosyl transferase domain AciM339_1540 PF16193 AAA C-terminal domain AciM339_1540 PF01661 Macro domain AciM339_1540 PF12002 MgsA AAA+ ATPase C terminal AciM339_1540 PF05496 Holliday junction DNA helicase RuvB P-loop domain AciM339_1545 PF01702 Queuine tRNA-ribosyltransferase AciM339_1547 PF00004 ATPase family associated with various cellular activities (AAA) AciM339_1547 PF05362 Lon protease (S16) C-terminal proteolytic domain AciM339_1553 PF00528 Binding-protein-dependent transport system inner membrane component AciM339_1554 PF08402 TOBE domain AciM339_1554 PF00005 ABC transporter AciM339_1558 PF00411 Ribosomal protein S11 AciM339_1559 PF00163 Ribosomal protein S4/S9 N-terminal domain AciM339_1559 PF01479 S4 domain AciM339_1560 PF00416 Ribosomal protein S13/S18 AciM339_1561 PF01807 CHC2 zinc finger AciM339_1561 PF08275 DNA primase catalytic core, N-terminal domain AciM339_1561 PF13662 Toprim domain AciM339_1562 PF00004 ATPase family associated with various cellular activities (AAA) AciM339_1562 PF05362 Lon protease (S16) C-terminal proteolytic domain AciM339_1563 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region AciM339_1566 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase AciM339_1566 PF05698 Bacterial trigger factor protein (TF) C-terminus AciM339_1566 PF05697 Bacterial trigger factor protein (TF) AciM339_1568 PF11495 Archaeal transcriptional regulator TrmB AciM339_1568 PF01978 Sugar-specific transcriptional regulator TrmB AciM339_1569 PF00072 Response regulator receiver domain AciM339_1571 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III AciM339_1571 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II AciM339_1571 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I AciM339_1571 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain AciM339_1573 PF03061 Thioesterase superfamily AciM339_1573 PF01008 Initiation factor 2 subunit family AciM339_1577 PF05221 S-adenosyl-L-homocysteine hydrolase AciM339_1577 PF00670 S-adenosyl-L-homocysteine hydrolase, NAD binding domain AciM339_1578 PF07690 Major Facilitator Superfamily AciM339_1579 PF02875 Mur ligase family, glutamate ligase domain AciM339_1579 PF08245 Mur ligase middle domain AciM339_1580 PF01926 50S ribosome-binding GTPase AciM339_1580 PF16360 GTP-binding GTPase Middle Region AciM339_1580 PF13167 GTP-binding GTPase N-terminal