locus-tag class description FIM01_00005 PF11638 DnaA N-terminal domain FIM01_00005 PF08299 Bacterial dnaA protein helix-turn-helix FIM01_00005 PF00308 Bacterial dnaA protein FIM01_00010 PF02768 DNA polymerase III beta subunit, C-terminal domain FIM01_00010 PF00712 DNA polymerase III beta subunit, N-terminal domain FIM01_00010 PF02767 DNA polymerase III beta subunit, central domain FIM01_00015 PF02463 RecF/RecN/SMC N terminal domain FIM01_00020 PF00204 DNA gyrase B FIM01_00020 PF00986 DNA gyrase B subunit, carboxyl terminus FIM01_00020 PF18053 DNA gyrase B subunit insert domain FIM01_00020 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FIM01_00020 PF01751 Toprim domain FIM01_00030 PF09335 SNARE associated Golgi protein FIM01_00035 PF12848 ABC transporter FIM01_00035 PF00005 ABC transporter FIM01_00055 PF01521 Iron-sulphur cluster biosynthesis FIM01_00060 PF00561 alpha/beta hydrolase fold FIM01_00065 PF03702 Anhydro-N-acetylmuramic acid kinase FIM01_00070 PF00579 tRNA synthetases class I (W and Y) FIM01_00115 PF00209 Sodium:neurotransmitter symporter family FIM01_00125 PF01189 16S rRNA methyltransferase RsmB/F FIM01_00125 PF01029 NusB family FIM01_00130 PF00551 Formyl transferase FIM01_00130 PF02911 Formyl transferase, C-terminal domain FIM01_00135 PF00920 Dehydratase family FIM01_00150 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FIM01_00150 PF03466 LysR substrate binding domain FIM01_00155 PF00860 Permease family FIM01_00160 PF00311 Phosphoenolpyruvate carboxylase FIM01_00165 PF00440 Bacterial regulatory proteins, tetR family FIM01_00165 PF08361 MAATS-type transcriptional repressor, C-terminal region FIM01_00170 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion FIM01_00175 PF00873 AcrB/AcrD/AcrF family FIM01_00185 PF00226 DnaJ domain FIM01_00185 PF00684 DnaJ central domain FIM01_00185 PF01556 DnaJ C terminal domain FIM01_00195 PF05173 Dihydrodipicolinate reductase, C-terminus FIM01_00195 PF01113 Dihydrodipicolinate reductase, N-terminus FIM01_00205 PF07690 Major Facilitator Superfamily FIM01_00210 PF00248 Aldo/keto reductase family FIM01_00215 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FIM01_00215 PF03466 LysR substrate binding domain FIM01_00230 PF00392 Bacterial regulatory proteins, gntR family FIM01_00230 PF00155 Aminotransferase class I and II FIM01_00235 PF00107 Zinc-binding dehydrogenase FIM01_00235 PF08240 Alcohol dehydrogenase GroES-like domain FIM01_00240 PF03352 Methyladenine glycosylase FIM01_00255 PF00633 Helix-hairpin-helix motif FIM01_00255 PF14815 NUDIX domain FIM01_00255 PF10576 Iron-sulfur binding domain of endonuclease III FIM01_00255 PF00730 HhH-GPD superfamily base excision DNA repair protein FIM01_00270 PF07043 Protein of unknown function (DUF1328) FIM01_00275 PF03692 Putative zinc- or iron-chelating domain FIM01_00280 PF07995 Glucose / Sorbosone dehydrogenase FIM01_00285 PF00004 ATPase family associated with various cellular activities (AAA) FIM01_00285 PF12002 MgsA AAA+ ATPase C terminal FIM01_00285 PF16193 AAA C-terminal domain FIM01_00290 PF01226 Formate/nitrite transporter FIM01_00300 PF01259 SAICAR synthetase FIM01_00310 PF00701 Dihydrodipicolinate synthetase family FIM01_00315 PF00857 Isochorismatase family FIM01_00320 PF01758 Sodium Bile acid symporter family FIM01_00325 PF01554 MatE FIM01_00330 PF04463 Protein of unknown function (DUF523) FIM01_00335 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily FIM01_00345 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily FIM01_00350 PF02798 Glutathione S-transferase, N-terminal domain FIM01_00350 PF14497 Glutathione S-transferase, C-terminal domain FIM01_00360 PF00324 Amino acid permease FIM01_00370 PF02492 CobW/HypB/UreG, nucleotide-binding domain FIM01_00370 PF07683 Cobalamin synthesis protein cobW C-terminal domain FIM01_00380 PF07702 UTRA domain FIM01_00380 PF00392 Bacterial regulatory proteins, gntR family FIM01_00385 PF05962 HutD FIM01_00390 PF17392 Urocanase C-terminal domain FIM01_00390 PF17391 Urocanase N-terminal domain FIM01_00390 PF01175 Urocanase Rossmann-like domain FIM01_00395 PF00221 Aromatic amino acid lyase FIM01_00400 PF00324 Amino acid permease FIM01_00405 PF01979 Amidohydrolase family FIM01_00410 PF00491 Arginase family FIM01_00425 PF01177 Asp/Glu/Hydantoin racemase FIM01_00440 PF00145 C-5 cytosine-specific DNA methylase FIM01_00445 PF08676 MutL C terminal dimerisation domain FIM01_00445 PF01119 DNA mismatch repair protein, C-terminal domain FIM01_00460 PF00664 ABC transporter transmembrane region FIM01_00460 PF00005 ABC transporter FIM01_00460 PF03412 Peptidase C39 family FIM01_00495 PF00665 Integrase core domain FIM01_00495 PF08281 Sigma-70, region 4 FIM01_00500 PF01695 IstB-like ATP binding protein FIM01_00520 PF13361 UvrD-like helicase C-terminal domain FIM01_00520 PF00580 UvrD/REP helicase N-terminal domain FIM01_00530 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) FIM01_00530 PF00271 Helicase conserved C-terminal domain FIM01_00530 PF08463 EcoEI R protein C-terminal FIM01_00530 PF04851 Type III restriction enzyme, res subunit FIM01_00540 PF02384 N-6 DNA Methylase FIM01_00540 PF12161 HsdM N-terminal domain FIM01_00550 PF01381 Helix-turn-helix FIM01_00565 PF00665 Integrase core domain FIM01_00575 PF01695 IstB-like ATP binding protein FIM01_00620 PF15978 Tn7-like transposition protein D FIM01_00620 PF06527 TniQ FIM01_00625 PF11426 Tn7 transposition regulator TnsC FIM01_00625 PF13401 AAA domain FIM01_00630 PF00665 Integrase core domain FIM01_00635 PF08721 TnsA endonuclease C terminal FIM01_00635 PF08722 TnsA endonuclease N terminal FIM01_00640 PF01380 SIS domain FIM01_00645 PF00132 Bacterial transferase hexapeptide (six repeats) FIM01_00645 PF12804 MobA-like NTP transferase domain FIM01_00645 PF14602 Hexapeptide repeat of succinyl-transferase FIM01_00650 PF04608 Phosphatidylglycerophosphatase A FIM01_00655 PF00586 AIR synthase related protein, N-terminal domain FIM01_00655 PF02769 AIR synthase related protein, C-terminal domain FIM01_00660 PF01029 NusB family FIM01_00665 PF00885 6,7-dimethyl-8-ribityllumazine synthase FIM01_00670 PF00925 GTP cyclohydrolase II FIM01_00670 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase FIM01_00700 PF02580 D-Tyr-tRNA(Tyr) deacylase FIM01_00705 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family FIM01_00705 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain FIM01_00710 PF00581 Rhodanese-like domain FIM01_00715 PF02666 Phosphatidylserine decarboxylase FIM01_00725 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FIM01_00725 PF11808 Phosphate regulon sensor protein PhoR FIM01_00725 PF00989 PAS fold FIM01_00725 PF00512 His Kinase A (phospho-acceptor) domain FIM01_00730 PF00072 Response regulator receiver domain FIM01_00730 PF00486 Transcriptional regulatory protein, C terminal FIM01_00740 PF00106 short chain dehydrogenase FIM01_00745 PF01554 MatE FIM01_00750 PF00155 Aminotransferase class I and II FIM01_00755 PF04286 Protein of unknown function (DUF445) FIM01_00770 PF04262 Glutamate-cysteine ligase FIM01_00775 PF02600 Disulfide bond formation protein DsbB FIM01_00780 PF04717 Type VI secretion system, phage-baseplate injector FIM01_00785 PF01471 Putative peptidoglycan binding domain FIM01_00785 PF01476 LysM domain FIM01_00785 PF01510 N-acetylmuramoyl-L-alanine amidase FIM01_00815 PF05728 Uncharacterised protein family (UPF0227) FIM01_00820 PF00204 DNA gyrase B FIM01_00820 PF00986 DNA gyrase B subunit, carboxyl terminus FIM01_00820 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FIM01_00820 PF01751 Toprim domain FIM01_00825 PF04115 Ureidoglycolate lyase FIM01_00830 PF03561 Allantoicase repeat FIM01_00835 PF01494 FAD binding domain FIM01_00845 PF00860 Permease family FIM01_00850 PF00576 HIUase/Transthyretin family FIM01_00880 PF02683 Cytochrome C biogenesis protein transmembrane region FIM01_00880 PF11412 Disulphide bond corrector protein DsbC FIM01_00885 PF00990 Diguanylate cyclase, GGDEF domain FIM01_00885 PF07694 5TMR of 5TMR-LYT FIM01_00890 PF07859 alpha/beta hydrolase fold FIM01_00900 PF03960 ArsC family FIM01_00905 PF03372 Endonuclease/Exonuclease/phosphatase family FIM01_00910 PF00156 Phosphoribosyl transferase domain FIM01_00915 PF00593 TonB dependent receptor FIM01_00915 PF07715 TonB-dependent Receptor Plug Domain FIM01_00925 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain FIM01_00925 PF02951 Prokaryotic glutathione synthetase, N-terminal domain FIM01_00930 PF03033 Glycosyltransferase family 28 N-terminal domain FIM01_00930 PF04101 Glycosyltransferase family 28 C-terminal domain FIM01_00935 PF01225 Mur ligase family, catalytic domain FIM01_00935 PF02875 Mur ligase family, glutamate ligase domain FIM01_00935 PF08245 Mur ligase middle domain FIM01_00940 PF07478 D-ala D-ala ligase C-terminus FIM01_00940 PF01820 D-ala D-ala ligase N-terminus FIM01_00945 PF08478 POTRA domain, FtsQ-type FIM01_00945 PF03799 Cell division protein FtsQ FIM01_00950 PF02491 SHS2 domain inserted in FTSA FIM01_00955 PF12327 FtsZ family, C-terminal domain FIM01_00955 PF00091 Tubulin/FtsZ family, GTPase domain FIM01_00960 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase FIM01_00970 PF01551 Peptidase family M23 FIM01_00975 PF00456 Transketolase, thiamine diphosphate binding domain FIM01_00975 PF17831 Pyruvate dehydrogenase E1 component middle domain FIM01_00980 PF00364 Biotin-requiring enzyme FIM01_00980 PF02817 e3 binding domain FIM01_00980 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) FIM01_00990 PF01169 Uncharacterized protein family UPF0016 FIM01_00995 PF07715 TonB-dependent Receptor Plug Domain FIM01_00995 PF00593 TonB dependent receptor FIM01_01000 PF00258 Flavodoxin FIM01_01000 PF01613 Flavin reductase like domain FIM01_01005 PF03692 Putative zinc- or iron-chelating domain FIM01_01010 PF00571 CBS domain FIM01_01010 PF00478 IMP dehydrogenase / GMP reductase domain FIM01_01015 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain FIM01_01015 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III FIM01_01015 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II FIM01_01015 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I FIM01_01020 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region FIM01_01020 PF01243 Pyridoxamine 5'-phosphate oxidase FIM01_01025 PF01368 DHH family FIM01_01025 PF17768 RecJ OB domain FIM01_01025 PF02272 DHHA1 domain FIM01_01045 PF00724 NADH:flavin oxidoreductase / NADH oxidase family FIM01_01050 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) FIM01_01055 PF04452 RNA methyltransferase FIM01_01060 PF00924 Mechanosensitive ion channel FIM01_01070 PF16177 Acetyl-coenzyme A synthetase N-terminus FIM01_01070 PF00501 AMP-binding enzyme FIM01_01070 PF13193 AMP-binding enzyme C-terminal domain FIM01_01075 PF00857 Isochorismatase family FIM01_01080 PF01037 Lrp/AsnC ligand binding domain FIM01_01085 PF00296 Luciferase-like monooxygenase FIM01_01090 PF03358 NADPH-dependent FMN reductase FIM01_01095 PF00196 Bacterial regulatory proteins, luxR family FIM01_01095 PF00072 Response regulator receiver domain FIM01_01105 PF01627 Hpt domain FIM01_01105 PF00072 Response regulator receiver domain FIM01_01105 PF00512 His Kinase A (phospho-acceptor) domain FIM01_01105 PF00672 HAMP domain FIM01_01105 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FIM01_01110 PF04341 Protein of unknown function, DUF485 FIM01_01115 PF00474 Sodium:solute symporter family FIM01_01125 PF02028 BCCT, betaine/carnitine/choline family transporter FIM01_01135 PF17158 Membrane-associated sensor, integral membrane domain FIM01_01135 PF00990 Diguanylate cyclase, GGDEF domain FIM01_01140 PF17760 UvrA interaction domain FIM01_01140 PF00005 ABC transporter FIM01_01140 PF17755 UvrA DNA-binding domain FIM01_01145 PF00440 Bacterial regulatory proteins, tetR family FIM01_01145 PF16925 Tetracyclin repressor-like, C-terminal domain FIM01_01150 PF08240 Alcohol dehydrogenase GroES-like domain FIM01_01150 PF00107 Zinc-binding dehydrogenase FIM01_01160 PF06942 GlpM protein FIM01_01165 PF03070 TENA/THI-4/PQQC family FIM01_01165 PF08543 Phosphomethylpyrimidine kinase FIM01_01165 PF02581 Thiamine monophosphate synthase FIM01_01175 PF07690 Major Facilitator Superfamily FIM01_01180 PF00436 Single-strand binding protein family FIM01_01190 PF03591 AzlC protein FIM01_01200 PF00324 Amino acid permease FIM01_01205 PF00155 Aminotransferase class I and II FIM01_01205 PF00392 Bacterial regulatory proteins, gntR family FIM01_01210 PF00202 Aminotransferase class-III FIM01_01215 PF00171 Aldehyde dehydrogenase family FIM01_01220 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FIM01_01225 PF00857 Isochorismatase family FIM01_01230 PF05726 Pirin C-terminal cupin domain FIM01_01230 PF02678 Pirin FIM01_01235 PF01593 Flavin containing amine oxidoreductase FIM01_01255 PF07690 Major Facilitator Superfamily FIM01_01260 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FIM01_01260 PF03466 LysR substrate binding domain FIM01_01280 PF00248 Aldo/keto reductase family FIM01_01285 PF12833 Helix-turn-helix domain FIM01_01285 PF02311 AraC-like ligand binding domain FIM01_01305 PF01638 HxlR-like helix-turn-helix FIM01_01320 PF01638 HxlR-like helix-turn-helix FIM01_01330 PF02525 Flavodoxin-like fold FIM01_01340 PF13302 Acetyltransferase (GNAT) domain FIM01_01350 PF02705 K+ potassium transporter FIM01_01380 PF00230 Major intrinsic protein FIM01_01395 PF00977 Histidine biosynthesis protein FIM01_01400 PF01636 Phosphotransferase enzyme family FIM01_01425 PF00977 Histidine biosynthesis protein FIM01_01440 PF00117 Glutamine amidotransferase class-I FIM01_01445 PF00475 Imidazoleglycerol-phosphate dehydratase FIM01_01465 PF00583 Acetyltransferase (GNAT) family FIM01_01470 PF13336 Acetyl-CoA hydrolase/transferase C-terminal domain FIM01_01470 PF02550 Acetyl-CoA hydrolase/transferase N-terminal domain FIM01_01480 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FIM01_01480 PF00672 HAMP domain FIM01_01480 PF00512 His Kinase A (phospho-acceptor) domain FIM01_01485 PF00072 Response regulator receiver domain FIM01_01485 PF00486 Transcriptional regulatory protein, C terminal FIM01_01490 PF16921 Tex protein YqgF-like domain FIM01_01490 PF00575 S1 RNA binding domain FIM01_01490 PF17674 HHH domain FIM01_01490 PF09371 Tex-like protein N-terminal domain FIM01_01495 PF00916 Sulfate permease family FIM01_01495 PF01740 STAS domain FIM01_01500 PF00106 short chain dehydrogenase FIM01_01505 PF01053 Cys/Met metabolism PLP-dependent enzyme FIM01_01510 PF00005 ABC transporter FIM01_01510 PF12848 ABC transporter FIM01_01535 PF00529 HlyD membrane-fusion protein of T1SS FIM01_01535 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion FIM01_01540 PF00873 AcrB/AcrD/AcrF family FIM01_01545 PF01545 Cation efflux family FIM01_01575 PF00324 Amino acid permease FIM01_01590 PF00749 tRNA synthetases class I (E and Q), catalytic domain FIM01_01605 PF01795 MraW methylase family FIM01_01615 PF00905 Penicillin binding protein transpeptidase domain FIM01_01615 PF03717 Penicillin-binding Protein dimerisation domain FIM01_01620 PF02875 Mur ligase family, glutamate ligase domain FIM01_01620 PF01225 Mur ligase family, catalytic domain FIM01_01620 PF08245 Mur ligase middle domain FIM01_01625 PF01225 Mur ligase family, catalytic domain FIM01_01625 PF08245 Mur ligase middle domain FIM01_01625 PF02875 Mur ligase family, glutamate ligase domain FIM01_01630 PF00953 Glycosyl transferase family 4 FIM01_01640 PF13847 Methyltransferase domain FIM01_01645 PF17092 Penicillin-binding protein OB-like domain FIM01_01645 PF00912 Transglycosylase FIM01_01645 PF00905 Penicillin binding protein transpeptidase domain FIM01_01670 PF11741 AMIN domain FIM01_01670 PF07660 Secretin and TonB N terminus short domain FIM01_01670 PF03958 Bacterial type II/III secretion system short domain FIM01_01670 PF00263 Bacterial type II and III secretion system protein FIM01_01675 PF01202 Shikimate kinase FIM01_01680 PF01761 3-dehydroquinate synthase FIM01_01690 PF01493 GXGXG motif FIM01_01690 PF04898 Glutamate synthase central domain FIM01_01690 PF01645 Conserved region in glutamate synthase FIM01_01690 PF00310 Glutamine amidotransferases class-II FIM01_01695 PF07992 Pyridine nucleotide-disulphide oxidoreductase FIM01_01695 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster FIM01_01705 PF04011 LemA family FIM01_01710 PF04536 TPM domain FIM01_01720 PF00114 Pilin (bacterial filament) FIM01_01720 PF07963 Prokaryotic N-terminal methylation motif FIM01_01725 PF15864 Protein glycosylation ligase FIM01_01725 PF11846 Virulence factor membrane-bound polymerase, C-terminal FIM01_01725 PF04932 O-Antigen ligase FIM01_01730 PF00210 Ferritin-like domain FIM01_01735 PF04324 BFD-like [2Fe-2S] binding domain FIM01_01740 PF01042 Endoribonuclease L-PSP FIM01_01745 PF13291 ACT domain FIM01_01745 PF04607 Region found in RelA / SpoT proteins FIM01_01745 PF02824 TGS domain FIM01_01755 PF01192 RNA polymerase Rpb6 FIM01_01760 PF00625 Guanylate kinase FIM01_01765 PF02401 LytB protein FIM01_01805 PF00886 Ribosomal protein S16 FIM01_01810 PF01782 RimM N-terminal domain FIM01_01810 PF05239 PRC-barrel domain FIM01_01815 PF01746 tRNA (Guanine-1)-methyltransferase FIM01_01820 PF01245 Ribosomal protein L19 FIM01_01825 PF00561 alpha/beta hydrolase fold FIM01_01830 PF03280 Proteobacterial lipase chaperone protein FIM01_01835 PF16198 tRNA pseudouridylate synthase B C-terminal domain FIM01_01835 PF01509 TruB family pseudouridylate synthase (N terminal domain) FIM01_01835 PF09157 Pseudouridine synthase II TruB, C-terminal FIM01_01840 PF01925 Sulfite exporter TauE/SafE FIM01_01850 PF00892 EamA-like transporter family FIM01_01855 PF00892 EamA-like transporter family FIM01_01860 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain FIM01_01860 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain FIM01_01865 PF01565 FAD binding domain FIM01_01865 PF02913 FAD linked oxidases, C-terminal domain FIM01_01875 PF03992 Antibiotic biosynthesis monooxygenase FIM01_01880 PF02525 Flavodoxin-like fold FIM01_01890 PF07690 Major Facilitator Superfamily FIM01_01895 PF12805 FUSC-like inner membrane protein yccS FIM01_01900 PF00080 Copper/zinc superoxide dismutase (SODC) FIM01_01905 PF13737 Transposase DDE domain FIM01_01910 PF01594 AI-2E family transporter FIM01_01915 PF13614 AAA domain FIM01_01935 PF08241 Methyltransferase domain FIM01_01945 PF00324 Amino acid permease FIM01_01950 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain FIM01_01950 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase FIM01_01955 PF00202 Aminotransferase class-III FIM01_01960 PF04958 Arginine N-succinyltransferase beta subunit FIM01_01965 PF00171 Aldehyde dehydrogenase family FIM01_01970 PF04996 Succinylarginine dihydrolase FIM01_01975 PF04952 Succinylglutamate desuccinylase / Aspartoacylase family FIM01_02005 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FIM01_02005 PF03466 LysR substrate binding domain FIM01_02010 PF00892 EamA-like transporter family FIM01_02030 PF05746 DALR anticodon binding domain FIM01_02030 PF02092 Glycyl-tRNA synthetase beta subunit FIM01_02035 PF02091 Glycyl-tRNA synthetase alpha subunit FIM01_02040 PF07690 Major Facilitator Superfamily FIM01_02055 PF00571 CBS domain FIM01_02060 PF04024 PspC domain FIM01_02070 PF02771 Acyl-CoA dehydrogenase, N-terminal domain FIM01_02070 PF00441 Acyl-CoA dehydrogenase, C-terminal domain FIM01_02070 PF12806 Acetyl-CoA dehydrogenase C-terminal like FIM01_02070 PF02770 Acyl-CoA dehydrogenase, middle domain FIM01_02080 PF01488 Shikimate / quinate 5-dehydrogenase FIM01_02080 PF18317 Shikimate 5'-dehydrogenase C-terminal domain FIM01_02080 PF08501 Shikimate dehydrogenase substrate binding domain FIM01_02085 PF01218 Coproporphyrinogen III oxidase FIM01_02090 PF00925 GTP cyclohydrolase II FIM01_02095 PF02780 Transketolase, C-terminal domain FIM01_02095 PF02779 Transketolase, pyrimidine binding domain FIM01_02095 PF13292 1-deoxy-D-xylulose-5-phosphate synthase FIM01_02100 PF00459 Inositol monophosphatase family FIM01_02105 PF00270 DEAD/DEAH box helicase FIM01_02105 PF12343 Cold shock protein DEAD box A FIM01_02105 PF03880 DbpA RNA binding domain FIM01_02105 PF00271 Helicase conserved C-terminal domain FIM01_02115 PF00005 ABC transporter FIM01_02120 PF02405 Permease MlaE FIM01_02130 PF05494 MlaC protein FIM01_02140 PF01544 CorA-like Mg2+ transporter protein FIM01_02145 PF03641 Possible lysine decarboxylase FIM01_02150 PF00293 NUDIX domain FIM01_02155 PF00156 Phosphoribosyl transferase domain FIM01_02160 PF00271 Helicase conserved C-terminal domain FIM01_02160 PF00270 DEAD/DEAH box helicase FIM01_02160 PF17191 RecG wedge domain FIM01_02175 PF01553 Acyltransferase FIM01_02185 PF00375 Sodium:dicarboxylate symporter family FIM01_02195 PF01926 50S ribosome-binding GTPase FIM01_02200 PF02082 Transcriptional regulator FIM01_02205 PF00042 Globin FIM01_02205 PF00970 Oxidoreductase FAD-binding domain FIM01_02205 PF00175 Oxidoreductase NAD-binding domain FIM01_02210 PF05872 Bacterial protein of unknown function (DUF853) FIM01_02215 PF01053 Cys/Met metabolism PLP-dependent enzyme FIM01_02220 PF00117 Glutamine amidotransferase class-I FIM01_02225 PF00338 Ribosomal protein S10p/S20e FIM01_02230 PF00297 Ribosomal protein L3 FIM01_02235 PF00573 Ribosomal protein L4/L1 family FIM01_02240 PF00276 Ribosomal protein L23 FIM01_02245 PF00181 Ribosomal Proteins L2, RNA binding domain FIM01_02245 PF03947 Ribosomal Proteins L2, C-terminal domain FIM01_02250 PF00203 Ribosomal protein S19 FIM01_02255 PF00237 Ribosomal protein L22p/L17e FIM01_02260 PF07650 KH domain FIM01_02260 PF00189 Ribosomal protein S3, C-terminal domain FIM01_02265 PF00252 Ribosomal protein L16p/L10e FIM01_02270 PF00831 Ribosomal L29 protein FIM01_02275 PF00366 Ribosomal protein S17 FIM01_02280 PF00238 Ribosomal protein L14p/L23e FIM01_02285 PF00467 KOW motif FIM01_02285 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 FIM01_02290 PF00281 Ribosomal protein L5 FIM01_02290 PF00673 ribosomal L5P family C-terminus FIM01_02295 PF00253 Ribosomal protein S14p/S29e FIM01_02300 PF00410 Ribosomal protein S8 FIM01_02305 PF00347 Ribosomal protein L6 FIM01_02310 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast FIM01_02315 PF03719 Ribosomal protein S5, C-terminal domain FIM01_02315 PF00333 Ribosomal protein S5, N-terminal domain FIM01_02320 PF00327 Ribosomal protein L30p/L7e FIM01_02325 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A FIM01_02330 PF00344 SecY translocase FIM01_02335 PF00444 Ribosomal protein L36 FIM01_02340 PF00416 Ribosomal protein S13/S18 FIM01_02345 PF00411 Ribosomal protein S11 FIM01_02350 PF00163 Ribosomal protein S4/S9 N-terminal domain FIM01_02350 PF01479 S4 domain FIM01_02355 PF01000 RNA polymerase Rpb3/RpoA insert domain FIM01_02355 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain FIM01_02355 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain FIM01_02360 PF01196 Ribosomal protein L17 FIM01_02365 PF00743 Flavin-binding monooxygenase-like FIM01_02370 PF02771 Acyl-CoA dehydrogenase, N-terminal domain FIM01_02370 PF00441 Acyl-CoA dehydrogenase, C-terminal domain FIM01_02370 PF02770 Acyl-CoA dehydrogenase, middle domain FIM01_02375 PF03937 Flavinator of succinate dehydrogenase FIM01_02405 PF09526 Probable metal-binding protein (DUF2387) FIM01_02410 PF01432 Peptidase family M3 FIM01_02415 PF17876 Cold shock domain FIM01_02415 PF08461 Ribonuclease R winged-helix domain FIM01_02415 PF00575 S1 RNA binding domain FIM01_02415 PF08206 Ribonuclease B OB domain FIM01_02415 PF00773 RNB domain FIM01_02460 PF01557 Fumarylacetoacetate (FAA) hydrolase family FIM01_02465 PF12833 Helix-turn-helix domain FIM01_02470 PF00892 EamA-like transporter family FIM01_02475 PF03631 Virulence factor BrkB FIM01_02480 PF03358 NADPH-dependent FMN reductase FIM01_02505 PF02130 Uncharacterized protein family UPF0054 FIM01_02510 PF02562 PhoH-like protein FIM01_02515 PF04055 Radical SAM superfamily FIM01_02515 PF01938 TRAM domain FIM01_02515 PF00919 Uncharacterized protein family UPF0004 FIM01_02520 PF10145 Phage-related minor tail protein FIM01_02520 PF01464 Transglycosylase SLT domain FIM01_02520 PF01551 Peptidase family M23 FIM01_02530 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain FIM01_02530 PF00056 lactate/malate dehydrogenase, NAD binding domain FIM01_02550 PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ FIM01_02555 PF01066 CDP-alcohol phosphatidyltransferase FIM01_02600 PF02771 Acyl-CoA dehydrogenase, N-terminal domain FIM01_02600 PF02770 Acyl-CoA dehydrogenase, middle domain FIM01_02600 PF00441 Acyl-CoA dehydrogenase, C-terminal domain FIM01_02605 PF17932 Tetracyclin repressor-like, C-terminal domain FIM01_02605 PF00440 Bacterial regulatory proteins, tetR family FIM01_02620 PF01039 Carboxyl transferase domain FIM01_02625 PF00441 Acyl-CoA dehydrogenase, C-terminal domain FIM01_02625 PF02771 Acyl-CoA dehydrogenase, N-terminal domain FIM01_02625 PF02770 Acyl-CoA dehydrogenase, middle domain FIM01_02635 PF00364 Biotin-requiring enzyme FIM01_02635 PF02785 Biotin carboxylase C-terminal domain FIM01_02635 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain FIM01_02635 PF00289 Biotin carboxylase, N-terminal domain FIM01_02645 PF04386 Stringent starvation protein B FIM01_02650 PF13417 Glutathione S-transferase, N-terminal domain FIM01_02650 PF00043 Glutathione S-transferase, C-terminal domain FIM01_02655 PF00380 Ribosomal protein S9/S16 FIM01_02660 PF00572 Ribosomal protein L13 FIM01_02665 PF04166 Pyridoxal phosphate biosynthetic protein PdxA FIM01_02670 PF00398 Ribosomal RNA adenine dimethylase FIM01_02675 PF00149 Calcineurin-like phosphoesterase FIM01_02695 PF16360 GTP-binding GTPase Middle Region FIM01_02695 PF13167 GTP-binding GTPase N-terminal FIM01_02695 PF01926 50S ribosome-binding GTPase FIM01_02705 PF13091 PLD-like domain FIM01_02710 PF00149 Calcineurin-like phosphoesterase FIM01_02710 PF10518 TAT (twin-arginine translocation) pathway signal sequence FIM01_02715 PF01389 OmpA-like transmembrane domain FIM01_02715 PF00691 OmpA family FIM01_02720 PF17152 Periplasmic sensor domain FIM01_02720 PF00990 Diguanylate cyclase, GGDEF domain FIM01_02755 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain FIM01_02755 PF07992 Pyridine nucleotide-disulphide oxidoreductase FIM01_02765 PF04273 Putative phosphatase (DUF442) FIM01_02765 PF00753 Metallo-beta-lactamase superfamily FIM01_02770 PF00561 alpha/beta hydrolase fold FIM01_02775 PF00085 Thioredoxin FIM01_02780 PF03061 Thioesterase superfamily FIM01_02790 PF04461 Protein of unknown function (DUF520) FIM01_02800 PF05430 S-adenosyl-L-methionine-dependent methyltransferase FIM01_02800 PF01266 FAD dependent oxidoreductase FIM01_02810 PF03795 YCII-related domain FIM01_02815 PF04279 Intracellular septation protein A FIM01_02820 PF02811 PHP domain FIM01_02825 PF01062 Bestrophin, RFP-TM, chloride channel FIM01_02830 PF04002 RadC-like JAB domain FIM01_02835 PF04127 DNA / pantothenate metabolism flavoprotein FIM01_02835 PF02441 Flavoprotein FIM01_02840 PF07549 SecD/SecF GG Motif FIM01_02840 PF02355 Protein export membrane protein FIM01_02845 PF02355 Protein export membrane protein FIM01_02845 PF13721 SecD export protein N-terminal TM region FIM01_02845 PF07549 SecD/SecF GG Motif FIM01_02850 PF02699 Preprotein translocase subunit FIM01_02855 PF01702 Queuine tRNA-ribosyltransferase FIM01_02870 PF02547 Queuosine biosynthesis protein FIM01_02880 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FIM01_02880 PF00512 His Kinase A (phospho-acceptor) domain FIM01_02880 PF07689 KaiB domain FIM01_02885 PF03710 Glutamate-ammonia ligase adenylyltransferase FIM01_02885 PF08335 GlnD PII-uridylyltransferase FIM01_02890 PF01063 Amino-transferase class IV FIM01_02905 PF01522 Polysaccharide deacetylase FIM01_02910 PF00535 Glycosyl transferase family 2 FIM01_02915 PF00534 Glycosyl transferases group 1 FIM01_02915 PF13439 Glycosyltransferase Family 4 FIM01_02940 PF17101 Stealth protein CR1, conserved region 1 FIM01_02940 PF11380 Stealth protein CR2, conserved region 2 FIM01_02940 PF17102 Stealth protein CR3, conserved region 3 FIM01_02945 PF02938 GAD domain FIM01_02945 PF00152 tRNA synthetases class II (D, K and N) FIM01_02945 PF01336 OB-fold nucleic acid binding domain FIM01_02955 PF07715 TonB-dependent Receptor Plug Domain FIM01_02955 PF00593 TonB dependent receptor FIM01_02975 PF06146 Phosphate-starvation-inducible E FIM01_02980 PF12806 Acetyl-CoA dehydrogenase C-terminal like FIM01_02980 PF00441 Acyl-CoA dehydrogenase, C-terminal domain FIM01_02980 PF02770 Acyl-CoA dehydrogenase, middle domain FIM01_02980 PF02771 Acyl-CoA dehydrogenase, N-terminal domain FIM01_02985 PF02771 Acyl-CoA dehydrogenase, N-terminal domain FIM01_02985 PF02770 Acyl-CoA dehydrogenase, middle domain FIM01_02985 PF12806 Acetyl-CoA dehydrogenase C-terminal like FIM01_02985 PF00441 Acyl-CoA dehydrogenase, C-terminal domain FIM01_02995 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FIM01_02995 PF00512 His Kinase A (phospho-acceptor) domain FIM01_02995 PF00672 HAMP domain FIM01_03000 PF00486 Transcriptional regulatory protein, C terminal FIM01_03000 PF00072 Response regulator receiver domain FIM01_03005 PF02696 Uncharacterized ACR, YdiU/UPF0061 family FIM01_03025 PF01923 Cobalamin adenosyltransferase FIM01_03030 PF07715 TonB-dependent Receptor Plug Domain FIM01_03030 PF00593 TonB dependent receptor FIM01_03035 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase FIM01_03040 PF00291 Pyridoxal-phosphate dependent enzyme FIM01_03065 PF00290 Tryptophan synthase alpha chain FIM01_03070 PF01039 Carboxyl transferase domain FIM01_03075 PF02875 Mur ligase family, glutamate ligase domain FIM01_03075 PF08245 Mur ligase middle domain FIM01_03090 PF00753 Metallo-beta-lactamase superfamily FIM01_03095 PF10417 C-terminal domain of 1-Cys peroxiredoxin FIM01_03095 PF00578 AhpC/TSA family FIM01_03100 PF07516 SecA Wing and Scaffold domain FIM01_03100 PF02810 SEC-C motif FIM01_03100 PF07517 SecA DEAD-like domain FIM01_03100 PF01043 SecA preprotein cross-linking domain FIM01_03110 PF07690 Major Facilitator Superfamily FIM01_03110 PF00083 Sugar (and other) transporter FIM01_03115 PF03006 Haemolysin-III related FIM01_03125 PF13673 Acetyltransferase (GNAT) domain FIM01_03140 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain FIM01_03140 PF00378 Enoyl-CoA hydratase/isomerase FIM01_03140 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain FIM01_03145 PF00108 Thiolase, N-terminal domain FIM01_03145 PF02803 Thiolase, C-terminal domain FIM01_03150 PF12833 Helix-turn-helix domain FIM01_03150 PF02311 AraC-like ligand binding domain FIM01_03155 PF02515 CoA-transferase family III FIM01_03160 PF04966 Carbohydrate-selective porin, OprB family FIM01_03165 PF01011 PQQ enzyme repeat FIM01_03170 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain FIM01_03170 PF01077 Nitrite and sulphite reductase 4Fe-4S domain FIM01_03180 PF00893 Small Multidrug Resistance protein FIM01_03190 PF00108 Thiolase, N-terminal domain FIM01_03190 PF02803 Thiolase, C-terminal domain FIM01_03200 PF00691 OmpA family FIM01_03200 PF13505 Outer membrane protein beta-barrel domain FIM01_03205 PF01139 tRNA-splicing ligase RtcB FIM01_03210 PF00324 Amino acid permease FIM01_03215 PF05175 Methyltransferase small domain FIM01_03215 PF08468 Methyltransferase small domain N-terminal FIM01_03220 PF00860 Permease family FIM01_03230 PF01741 Large-conductance mechanosensitive channel, MscL FIM01_03245 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain FIM01_03245 PF06827 Zinc finger found in FPG and IleRS FIM01_03245 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain FIM01_03250 PF02245 Methylpurine-DNA glycosylase (MPG) FIM01_03255 PF00593 TonB dependent receptor FIM01_03255 PF07715 TonB-dependent Receptor Plug Domain FIM01_03260 PF00724 NADH:flavin oxidoreductase / NADH oxidase family FIM01_03265 PF03547 Membrane transport protein FIM01_03275 PF13098 Thioredoxin-like domain FIM01_03275 PF10411 Disulfide bond isomerase protein N-terminus FIM01_03280 PF01571 Aminomethyltransferase folate-binding domain FIM01_03290 PF04343 Protein of unknown function, DUF488 FIM01_03295 PF08274 PhnA Zinc-Ribbon FIM01_03295 PF03831 PhnA domain FIM01_03300 PF07411 Domain of unknown function (DUF1508) FIM01_03305 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) FIM01_03305 PF04073 Aminoacyl-tRNA editing domain FIM01_03305 PF03129 Anticodon binding domain FIM01_03310 PF00873 AcrB/AcrD/AcrF family FIM01_03325 PF00072 Response regulator receiver domain FIM01_03330 PF00072 Response regulator receiver domain FIM01_03335 PF01584 CheW-like domain FIM01_03340 PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term FIM01_03340 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain FIM01_03345 PF01584 CheW-like domain FIM01_03345 PF00072 Response regulator receiver domain FIM01_03345 PF01627 Hpt domain FIM01_03345 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FIM01_03355 PF06969 HemN C-terminal domain FIM01_03355 PF04055 Radical SAM superfamily FIM01_03365 PF07687 Peptidase dimerisation domain FIM01_03365 PF01546 Peptidase family M20/M25/M40 FIM01_03370 PF08085 Entericidin EcnA/B family FIM01_03380 PF04304 Protein of unknown function (DUF454) FIM01_03385 PF17969 L,D-transpeptidase C-terminal domain FIM01_03385 PF03734 L,D-transpeptidase catalytic domain FIM01_03425 PF00175 Oxidoreductase NAD-binding domain FIM01_03425 PF00258 Flavodoxin FIM01_03425 PF00667 FAD binding domain FIM01_03435 PF12805 FUSC-like inner membrane protein yccS FIM01_03440 PF07690 Major Facilitator Superfamily FIM01_03445 PF00881 Nitroreductase family FIM01_03460 PF01235 Sodium:alanine symporter family FIM01_03465 PF01734 Patatin-like phospholipase FIM01_03470 PF00291 Pyridoxal-phosphate dependent enzyme FIM01_03470 PF13291 ACT domain FIM01_03475 PF05992 SbmA/BacA-like family FIM01_03500 PF02637 GatB domain FIM01_03500 PF02934 GatB/GatE catalytic domain FIM01_03505 PF01425 Amidase FIM01_03510 PF02686 Glu-tRNAGln amidotransferase C subunit FIM01_03520 PF04085 rod shape-determining protein MreC FIM01_03525 PF04093 rod shape-determining protein MreD FIM01_03530 PF02545 Maf-like protein FIM01_03535 PF00575 S1 RNA binding domain FIM01_03535 PF10150 Ribonuclease E/G family FIM01_03545 PF06974 Protein of unknown function (DUF1298) FIM01_03545 PF03007 Wax ester synthase-like Acyl-CoA acyltransferase domain FIM01_03550 PF01507 Phosphoadenosine phosphosulfate reductase family FIM01_03565 PF02525 Flavodoxin-like fold FIM01_03585 PF02673 Bacitracin resistance protein BacA FIM01_03590 PF12833 Helix-turn-helix domain FIM01_03590 PF06719 AraC-type transcriptional regulator N-terminus FIM01_03595 PF00698 Acyl transferase domain FIM01_03595 PF02801 Beta-ketoacyl synthase, C-terminal domain FIM01_03595 PF00109 Beta-ketoacyl synthase, N-terminal domain FIM01_03595 PF16197 Ketoacyl-synthetase C-terminal extension FIM01_03595 PF09277 Erythronolide synthase, docking FIM01_03595 PF08990 Erythronolide synthase docking FIM01_03595 PF00550 Phosphopantetheine attachment site FIM01_03595 PF14765 Polyketide synthase dehydratase FIM01_03595 PF08659 KR domain FIM01_03595 PF08240 Alcohol dehydrogenase GroES-like domain FIM01_03600 PF01965 DJ-1/PfpI family FIM01_03665 PF02384 N-6 DNA Methylase FIM01_03665 PF12161 HsdM N-terminal domain FIM01_03695 PF03796 DnaB-like helicase C terminal domain FIM01_03695 PF14528 LAGLIDADG-like domain FIM01_03695 PF00772 DnaB-like helicase N terminal domain FIM01_03740 PF00149 Calcineurin-like phosphoesterase FIM01_04000 PF00589 Phage integrase family FIM01_04000 PF13356 Arm DNA-binding domain FIM01_04005 PF00589 Phage integrase family FIM01_04065 PF00717 Peptidase S24-like FIM01_04065 PF01381 Helix-turn-helix FIM01_04090 PF03796 DnaB-like helicase C terminal domain FIM01_04090 PF00772 DnaB-like helicase N terminal domain FIM01_04310 PF00324 Amino acid permease FIM01_04315 PF04303 PrpF protein FIM01_04320 PF00348 Polyprenyl synthetase FIM01_04325 PF04237 YjbR FIM01_04330 PF01145 SPFH domain / Band 7 family FIM01_04340 PF01734 Patatin-like phospholipase FIM01_04360 PF08019 Phosphoethanolamine transferase EptA/EptB FIM01_04360 PF00884 Sulfatase FIM01_04365 PF00486 Transcriptional regulatory protein, C terminal FIM01_04365 PF00072 Response regulator receiver domain FIM01_04370 PF08521 Two-component sensor kinase N-terminal FIM01_04370 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FIM01_04370 PF00512 His Kinase A (phospho-acceptor) domain FIM01_04380 PF00909 Ammonium Transporter Family FIM01_04390 PF03466 LysR substrate binding domain FIM01_04390 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FIM01_04410 PF08264 Anticodon-binding domain of tRNA FIM01_04410 PF10458 Valyl tRNA synthetase tRNA binding arm FIM01_04410 PF00133 tRNA synthetases class I (I, L, M and V) FIM01_04430 PF01906 Putative heavy-metal-binding FIM01_04435 PF01906 Putative heavy-metal-binding FIM01_04440 PF02321 Outer membrane efflux protein FIM01_04445 PF00873 AcrB/AcrD/AcrF family FIM01_04450 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion FIM01_04450 PF00529 HlyD membrane-fusion protein of T1SS FIM01_04455 PF01569 PAP2 superfamily FIM01_04465 PF00348 Polyprenyl synthetase FIM01_04475 PF00829 Ribosomal prokaryotic L21 protein FIM01_04480 PF01016 Ribosomal L27 protein FIM01_04485 PF03548 Outer membrane lipoprotein carrier protein LolA FIM01_04495 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) FIM01_04495 PF02403 Seryl-tRNA synthetase N-terminal domain FIM01_04500 PF14824 Sirohaem biosynthesis protein central FIM01_04500 PF10414 Sirohaem synthase dimerisation region FIM01_04500 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases FIM01_04505 PF00588 SpoU rRNA Methylase family FIM01_04510 PF01638 HxlR-like helix-turn-helix FIM01_04515 PF03358 NADPH-dependent FMN reductase FIM01_04520 PF13520 Amino acid permease FIM01_04525 PF00465 Iron-containing alcohol dehydrogenase FIM01_04535 PF03099 Biotin/lipoate A/B protein ligase family FIM01_04540 PF04359 Protein of unknown function (DUF493) FIM01_04545 PF03979 Sigma-70 factor, region 1.1 FIM01_04545 PF00140 Sigma-70 factor, region 1.2 FIM01_04545 PF04542 Sigma-70 region 2 FIM01_04545 PF04539 Sigma-70 region 3 FIM01_04545 PF04545 Sigma-70, region 4 FIM01_04545 PF04546 Sigma-70, non-essential region FIM01_04570 PF00285 Citrate synthase, C-terminal domain FIM01_04575 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit FIM01_04580 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit FIM01_04585 PF02910 Fumarate reductase flavoprotein C-term FIM01_04585 PF00890 FAD binding domain FIM01_04590 PF13085 2Fe-2S iron-sulfur cluster binding domain FIM01_04605 PF16870 2-oxoglutarate dehydrogenase C-terminal FIM01_04605 PF00676 Dehydrogenase E1 component FIM01_04605 PF16078 2-oxoglutarate dehydrogenase N-terminus FIM01_04605 PF02779 Transketolase, pyrimidine binding domain FIM01_04610 PF02817 e3 binding domain FIM01_04610 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) FIM01_04610 PF00364 Biotin-requiring enzyme FIM01_04615 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain FIM01_04615 PF07992 Pyridine nucleotide-disulphide oxidoreductase FIM01_04620 PF00549 CoA-ligase FIM01_04620 PF08442 ATP-grasp domain FIM01_04625 PF00549 CoA-ligase FIM01_04625 PF02629 CoA binding domain FIM01_04645 PF00579 tRNA synthetases class I (W and Y) FIM01_04650 PF05661 Protein of unknown function (DUF808) FIM01_04655 PF04228 Putative neutral zinc metallopeptidase FIM01_04660 PF00999 Sodium/hydrogen exchanger family FIM01_04675 PF09587 Bacterial capsule synthesis protein PGA_cap FIM01_04685 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain FIM01_04690 PF00582 Universal stress protein family FIM01_04695 PF00132 Bacterial transferase hexapeptide (six repeats) FIM01_04700 PF03449 Transcription elongation factor, N-terminal FIM01_04700 PF01272 Transcription elongation factor, GreA/GreB, C-term FIM01_04705 PF02142 MGS-like domain FIM01_04705 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain FIM01_04705 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain FIM01_04710 PF00117 Glutamine amidotransferase class-I FIM01_04710 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain FIM01_04725 PF01985 CRS1 / YhbY (CRM) domain FIM01_04730 PF01728 FtsJ-like methyltransferase FIM01_04735 PF06480 FtsH Extracellular FIM01_04735 PF17862 AAA+ lid domain FIM01_04735 PF00004 ATPase family associated with various cellular activities (AAA) FIM01_04735 PF01434 Peptidase family M41 FIM01_04740 PF00809 Pterin binding enzyme FIM01_04760 PF16655 PhoD-like phosphatase, N-terminal domain FIM01_04760 PF09423 PhoD-like phosphatase FIM01_04775 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain FIM01_04775 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain FIM01_04790 PF00083 Sugar (and other) transporter FIM01_04795 PF02782 FGGY family of carbohydrate kinases, C-terminal domain FIM01_04795 PF00370 FGGY family of carbohydrate kinases, N-terminal domain FIM01_04800 PF16901 C-terminal domain of alpha-glycerophosphate oxidase FIM01_04800 PF01266 FAD dependent oxidoreductase FIM01_04805 PF17297 Phosphoenolpyruvate carboxykinase N-terminal domain FIM01_04805 PF00821 Phosphoenolpyruvate carboxykinase C-terminal P-loop domain FIM01_04810 PF00781 Diacylglycerol kinase catalytic domain FIM01_04815 PF00149 Calcineurin-like phosphoesterase FIM01_04825 PF00166 Chaperonin 10 Kd subunit FIM01_04830 PF00118 TCP-1/cpn60 chaperonin family FIM01_04835 PF01219 Prokaryotic diacylglycerol kinase FIM01_04840 PF00753 Metallo-beta-lactamase superfamily FIM01_04845 PF03009 Glycerophosphoryl diester phosphodiesterase family FIM01_04850 PF00873 AcrB/AcrD/AcrF family FIM01_04860 PF01435 Peptidase family M48 FIM01_04865 PF01464 Transglycosylase SLT domain FIM01_04875 PF01171 PP-loop family FIM01_04885 PF00497 Bacterial extracellular solute-binding proteins, family 3 FIM01_04885 PF01464 Transglycosylase SLT domain FIM01_04890 PF03449 Transcription elongation factor, N-terminal FIM01_04890 PF01272 Transcription elongation factor, GreA/GreB, C-term FIM01_04905 PF00975 Thioesterase domain FIM01_04905 PF00550 Phosphopantetheine attachment site FIM01_04905 PF00668 Condensation domain FIM01_04905 PF00501 AMP-binding enzyme FIM01_04905 PF13193 AMP-binding enzyme C-terminal domain FIM01_04945 PF00881 Nitroreductase family FIM01_04960 PF02595 Glycerate kinase family FIM01_04965 PF00384 Molybdopterin oxidoreductase FIM01_04970 PF02634 FdhD/NarQ family FIM01_04975 PF06803 Protein of unknown function (DUF1232) FIM01_04980 PF11890 Domain of unknown function (DUF3410) FIM01_04980 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain FIM01_04980 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain FIM01_04985 PF00152 tRNA synthetases class II (D, K and N) FIM01_04995 PF18073 Rubredoxin metal binding domain FIM01_05000 PF00324 Amino acid permease FIM01_05010 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain FIM01_05010 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain FIM01_05015 PF01678 Diaminopimelate epimerase FIM01_05020 PF00561 alpha/beta hydrolase fold FIM01_05025 PF01810 LysE type translocator FIM01_05030 PF02899 Phage integrase, N-terminal SAM-like domain FIM01_05030 PF00589 Phage integrase family FIM01_05035 PF01012 Electron transfer flavoprotein domain FIM01_05040 PF01012 Electron transfer flavoprotein domain FIM01_05040 PF00766 Electron transfer flavoprotein FAD-binding domain FIM01_05045 PF00521 DNA gyrase/topoisomerase IV, subunit A FIM01_05045 PF03989 DNA gyrase C-terminal domain, beta-propeller FIM01_05060 PF00535 Glycosyl transferase family 2 FIM01_05080 PF13533 Biotin-lipoyl like FIM01_05090 PF00266 Aminotransferase class-V FIM01_05100 PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 FIM01_05110 PF02687 FtsX-like permease family FIM01_05110 PF12704 MacB-like periplasmic core domain FIM01_05115 PF00005 ABC transporter FIM01_05120 PF00753 Metallo-beta-lactamase superfamily FIM01_05120 PF03772 Competence protein FIM01_05120 PF13567 Domain of unknown function (DUF4131) FIM01_05130 PF01343 Peptidase family S49 FIM01_05130 PF06965 Na+/H+ antiporter 1 FIM01_05135 PF12697 Alpha/beta hydrolase family FIM01_05140 PF00551 Formyl transferase FIM01_05145 PF02769 AIR synthase related protein, C-terminal domain FIM01_05145 PF00586 AIR synthase related protein, N-terminal domain FIM01_05150 PF01594 AI-2E family transporter FIM01_05155 PF00308 Bacterial dnaA protein FIM01_05155 PF08299 Bacterial dnaA protein helix-turn-helix FIM01_05155 PF11638 DnaA N-terminal domain FIM01_05185 PF00588 SpoU rRNA Methylase family FIM01_05185 PF08032 RNA 2'-O ribose methyltransferase substrate binding FIM01_05190 PF00316 Fructose-1-6-bisphosphatase, N-terminal domain FIM01_05200 PF00691 OmpA family FIM01_05215 PF02472 Biopolymer transport protein ExbD/TolR FIM01_05220 PF01618 MotA/TolQ/ExbB proton channel family FIM01_05225 PF03061 Thioesterase superfamily FIM01_05230 PF01546 Peptidase family M20/M25/M40 FIM01_05230 PF07687 Peptidase dimerisation domain FIM01_05235 PF05496 Holliday junction DNA helicase RuvB P-loop domain FIM01_05235 PF17864 RuvB AAA lid domain FIM01_05235 PF05491 RuvB C-terminal winged helix domain FIM01_05240 PF01330 RuvA N terminal domain FIM01_05240 PF07499 RuvA, C-terminal domain FIM01_05245 PF01966 HD domain FIM01_05250 PF18076 Formylglycinamide ribonucleotide amidotransferase N-terminal FIM01_05250 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain FIM01_05250 PF02769 AIR synthase related protein, C-terminal domain FIM01_05255 PF07690 Major Facilitator Superfamily FIM01_05260 PF01784 NIF3 (NGG1p interacting factor 3) FIM01_05265 PF00378 Enoyl-CoA hydratase/isomerase FIM01_05270 PF01467 Cytidylyltransferase-like FIM01_05270 PF00293 NUDIX domain FIM01_05280 PF00578 AhpC/TSA family FIM01_05295 PF06508 Queuosine biosynthesis protein QueC FIM01_05305 PF14602 Hexapeptide repeat of succinyl-transferase FIM01_05305 PF14805 Tetrahydrodipicolinate N-succinyltransferase N-terminal FIM01_05305 PF00132 Bacterial transferase hexapeptide (six repeats) FIM01_05315 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FIM01_05315 PF03466 LysR substrate binding domain FIM01_05320 PF00005 ABC transporter FIM01_05320 PF12857 TOBE-like domain FIM01_05325 PF00528 Binding-protein-dependent transport system inner membrane component FIM01_05330 PF00528 Binding-protein-dependent transport system inner membrane component FIM01_05345 PF01063 Amino-transferase class IV FIM01_05350 PF02618 YceG-like family FIM01_05355 PF02223 Thymidylate kinase FIM01_05365 PF00890 FAD binding domain FIM01_05365 PF02910 Fumarate reductase flavoprotein C-term FIM01_05370 PF13180 PDZ domain FIM01_05380 PF06421 GTP-binding protein LepA C-terminus FIM01_05380 PF00009 Elongation factor Tu GTP binding domain FIM01_05380 PF00679 Elongation factor G C-terminus FIM01_05380 PF03144 Elongation factor Tu domain 2 FIM01_05385 PF10502 Signal peptidase, peptidase S26 FIM01_05395 PF14622 Ribonuclease-III-like FIM01_05395 PF00035 Double-stranded RNA binding motif FIM01_05400 PF01926 50S ribosome-binding GTPase FIM01_05400 PF07650 KH domain FIM01_05410 PF02565 Recombination protein O C terminal FIM01_05410 PF11967 Recombination protein O N terminal FIM01_05415 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ FIM01_05420 PF06175 tRNA-(MS[2]IO[6]A)-hydroxylase (MiaE) FIM01_05425 PF00106 short chain dehydrogenase FIM01_05465 PF17151 Periplasmic sensor domain FIM01_05465 PF00990 Diguanylate cyclase, GGDEF domain FIM01_05475 PF12344 Ultra-violet resistance protein B FIM01_05475 PF00271 Helicase conserved C-terminal domain FIM01_05475 PF17757 UvrB interaction domain FIM01_05475 PF02151 UvrB/uvrC motif FIM01_05475 PF04851 Type III restriction enzyme, res subunit FIM01_05485 PF00892 EamA-like transporter family FIM01_05490 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain FIM01_05490 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain FIM01_05505 PF01926 50S ribosome-binding GTPase FIM01_05505 PF01018 GTP1/OBG FIM01_05510 PF00696 Amino acid kinase family FIM01_05510 PF01472 PUA domain FIM01_05520 PF07759 Protein of unknown function (DUF1615) FIM01_05525 PF01207 Dihydrouridine synthase (Dus) FIM01_05530 PF03060 Nitronate monooxygenase FIM01_05545 PF02350 UDP-N-acetylglucosamine 2-epimerase FIM01_05575 PF03441 FAD binding domain of DNA photolyase FIM01_05575 PF00875 DNA photolyase FIM01_05580 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase FIM01_05585 PF07992 Pyridine nucleotide-disulphide oxidoreductase FIM01_05590 PF07943 Penicillin-binding protein 5, C-terminal domain FIM01_05590 PF00768 D-alanyl-D-alanine carboxypeptidase FIM01_05600 PF03971 Monomeric isocitrate dehydrogenase FIM01_05605 PF00849 RNA pseudouridylate synthase FIM01_05610 PF00180 Isocitrate/isopropylmalate dehydrogenase FIM01_05630 PF06779 Uncharacterised MFS-type transporter YbfB FIM01_05635 PF03466 LysR substrate binding domain FIM01_05635 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FIM01_05645 PF02567 Phenazine biosynthesis-like protein FIM01_05650 PF05193 Peptidase M16 inactive domain FIM01_05650 PF00675 Insulinase (Peptidase family M16) FIM01_05675 PF01867 CRISPR associated protein Cas1 FIM01_05685 PF09611 CRISPR-associated protein (Cas_Csy1) FIM01_05690 PF09614 CRISPR-associated protein (Cas_Csy2) FIM01_05695 PF09615 CRISPR-associated protein (Cas_Csy3) FIM01_05705 PF02581 Thiamine monophosphate synthase FIM01_05710 PF00202 Aminotransferase class-III FIM01_05720 PF00849 RNA pseudouridylate synthase FIM01_05725 PF18337 RapA N-terminal Tudor like domain FIM01_05725 PF18339 RapA N-terminal Tudor like domain 1 FIM01_05725 PF00176 SNF2 family N-terminal domain FIM01_05725 PF12137 RNA polymerase recycling family C-terminal FIM01_05725 PF00271 Helicase conserved C-terminal domain FIM01_05735 PF00440 Bacterial regulatory proteins, tetR family FIM01_05740 PF00970 Oxidoreductase FAD-binding domain FIM01_05740 PF00111 2Fe-2S iron-sulfur cluster binding domain FIM01_05740 PF00175 Oxidoreductase NAD-binding domain FIM01_05745 PF00487 Fatty acid desaturase FIM01_05755 PF00440 Bacterial regulatory proteins, tetR family FIM01_05755 PF17754 MftR C-terminal domain FIM01_05765 PF00202 Aminotransferase class-III FIM01_05770 PF00282 Pyridoxal-dependent decarboxylase conserved domain FIM01_05775 PF00171 Aldehyde dehydrogenase family FIM01_05780 PF01037 Lrp/AsnC ligand binding domain FIM01_05785 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain FIM01_05785 PF00205 Thiamine pyrophosphate enzyme, central domain FIM01_05785 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain FIM01_05790 PF00324 Amino acid permease FIM01_05795 PF12849 PBP superfamily domain FIM01_05800 PF00528 Binding-protein-dependent transport system inner membrane component FIM01_05805 PF00528 Binding-protein-dependent transport system inner membrane component FIM01_05810 PF00005 ABC transporter FIM01_05815 PF01343 Peptidase family S49 FIM01_05815 PF08496 Peptidase family S49 N-terminal FIM01_05830 PF08328 Adenylosuccinate lyase C-terminal FIM01_05830 PF00206 Lyase FIM01_05835 PF04356 Protein of unknown function (DUF489) FIM01_05845 PF13344 Haloacid dehalogenase-like hydrolase FIM01_05845 PF00293 NUDIX domain FIM01_05850 PF00132 Bacterial transferase hexapeptide (six repeats) FIM01_05855 PF00768 D-alanyl-D-alanine carboxypeptidase FIM01_05855 PF07943 Penicillin-binding protein 5, C-terminal domain FIM01_05870 PF01975 Survival protein SurE FIM01_05875 PF01551 Peptidase family M23 FIM01_05875 PF01476 LysM domain FIM01_05880 PF03466 LysR substrate binding domain FIM01_05880 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FIM01_05885 PF05362 Lon protease (S16) C-terminal proteolytic domain FIM01_05885 PF13654 AAA domain FIM01_05890 PF07690 Major Facilitator Superfamily FIM01_05895 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily FIM01_05900 PF13593 SBF-like CPA transporter family (DUF4137) FIM01_05905 PF01197 Ribosomal protein L31 FIM01_05910 PF00563 EAL domain FIM01_05910 PF12792 CSS motif domain associated with EAL FIM01_05920 PF04055 Radical SAM superfamily FIM01_05925 PF01132 Elongation factor P (EF-P) OB domain FIM01_05925 PF09285 Elongation factor P, C-terminal FIM01_05925 PF08207 Elongation factor P (EF-P) KOW-like domain FIM01_05930 PF02554 Carbon starvation protein CstA FIM01_05930 PF13722 5TM C-terminal transporter carbon starvation CstA FIM01_05935 PF04328 Selenoprotein, putative FIM01_05945 PF03466 LysR substrate binding domain FIM01_05945 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FIM01_05950 PF00557 Metallopeptidase family M24 FIM01_05955 PF02028 BCCT, betaine/carnitine/choline family transporter FIM01_05960 PF02028 BCCT, betaine/carnitine/choline family transporter FIM01_05965 PF00848 Ring hydroxylating alpha subunit (catalytic domain) FIM01_05965 PF00355 Rieske [2Fe-2S] domain FIM01_05975 PF07992 Pyridine nucleotide-disulphide oxidoreductase FIM01_05975 PF18113 Rubredoxin binding C-terminal domain FIM01_05980 PF05430 S-adenosyl-L-methionine-dependent methyltransferase FIM01_05980 PF01266 FAD dependent oxidoreductase FIM01_06000 PF00892 EamA-like transporter family FIM01_06010 PF02604 Antitoxin Phd_YefM, type II toxin-antitoxin system FIM01_06035 PF02678 Pirin FIM01_06035 PF17954 Quercetinase C-terminal cupin domain FIM01_06040 PF00291 Pyridoxal-phosphate dependent enzyme FIM01_06045 PF13309 HTH domain FIM01_06045 PF08348 YheO-like PAS domain FIM01_06055 PF00550 Phosphopantetheine attachment site FIM01_06055 PF13193 AMP-binding enzyme C-terminal domain FIM01_06055 PF00668 Condensation domain FIM01_06055 PF00501 AMP-binding enzyme FIM01_06060 PF00501 AMP-binding enzyme FIM01_06060 PF00668 Condensation domain FIM01_06060 PF00550 Phosphopantetheine attachment site FIM01_06060 PF00975 Thioesterase domain FIM01_06060 PF13193 AMP-binding enzyme C-terminal domain FIM01_06065 PF01032 FecCD transport family FIM01_06070 PF01032 FecCD transport family FIM01_06075 PF00005 ABC transporter FIM01_06080 PF01497 Periplasmic binding protein FIM01_06085 PF07715 TonB-dependent Receptor Plug Domain FIM01_06085 PF00593 TonB dependent receptor FIM01_06090 PF13434 L-lysine 6-monooxygenase (NADPH-requiring) FIM01_06095 PF00550 Phosphopantetheine attachment site FIM01_06095 PF00668 Condensation domain FIM01_06095 PF00501 AMP-binding enzyme FIM01_06100 PF13193 AMP-binding enzyme C-terminal domain FIM01_06100 PF00501 AMP-binding enzyme FIM01_06105 PF00857 Isochorismatase family FIM01_06105 PF00550 Phosphopantetheine attachment site FIM01_06110 PF00282 Pyridoxal-dependent decarboxylase conserved domain FIM01_06120 PF00005 ABC transporter FIM01_06120 PF00664 ABC transporter transmembrane region FIM01_06125 PF00664 ABC transporter transmembrane region FIM01_06125 PF00005 ABC transporter FIM01_06130 PF00975 Thioesterase domain FIM01_06140 PF00425 chorismate binding enzyme FIM01_06150 PF01208 Uroporphyrinogen decarboxylase (URO-D) FIM01_06155 PF05675 Protein of unknown function (DUF817) FIM01_06170 PF00144 Beta-lactamase FIM01_06185 PF00111 2Fe-2S iron-sulfur cluster binding domain FIM01_06185 PF01799 [2Fe-2S] binding domain FIM01_06190 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase FIM01_06190 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain FIM01_06205 PF00218 Indole-3-glycerol phosphate synthase FIM01_06210 PF02885 Glycosyl transferase family, helical bundle domain FIM01_06210 PF00591 Glycosyl transferase family, a/b domain FIM01_06215 PF00593 TonB dependent receptor FIM01_06215 PF07715 TonB-dependent Receptor Plug Domain FIM01_06220 PF11838 ERAP1-like C-terminal domain FIM01_06220 PF01433 Peptidase family M1 domain FIM01_06225 PF00117 Glutamine amidotransferase class-I FIM01_06235 PF00854 POT family FIM01_06245 PF04345 Chorismate lyase FIM01_06250 PF01040 UbiA prenyltransferase family FIM01_06285 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain FIM01_06285 PF02777 Iron/manganese superoxide dismutases, C-terminal domain FIM01_06290 PF01784 NIF3 (NGG1p interacting factor 3) FIM01_06295 PF13180 PDZ domain FIM01_06300 PF12627 Probable RNA and SrmB- binding site of polymerase A FIM01_06300 PF01743 Poly A polymerase head domain FIM01_06305 PF01515 Phosphate acetyl/butaryl transferase FIM01_06305 PF03949 Malic enzyme, NAD binding domain FIM01_06305 PF00390 Malic enzyme, N-terminal domain FIM01_06310 PF03707 Bacterial signalling protein N terminal repeat FIM01_06310 PF00990 Diguanylate cyclase, GGDEF domain FIM01_06310 PF00563 EAL domain FIM01_06315 PF04452 RNA methyltransferase FIM01_06320 PF02219 Methylenetetrahydrofolate reductase FIM01_06325 PF00670 S-adenosyl-L-homocysteine hydrolase, NAD binding domain FIM01_06325 PF05221 S-adenosyl-L-homocysteine hydrolase FIM01_06340 PF09317 Domain of unknown function (DUF1974) FIM01_06340 PF02771 Acyl-CoA dehydrogenase, N-terminal domain FIM01_06340 PF00441 Acyl-CoA dehydrogenase, C-terminal domain FIM01_06345 PF04055 Radical SAM superfamily FIM01_06350 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain FIM01_06350 PF07992 Pyridine nucleotide-disulphide oxidoreductase FIM01_06360 PF07690 Major Facilitator Superfamily FIM01_06370 PF00557 Metallopeptidase family M24 FIM01_06375 PF00318 Ribosomal protein S2 FIM01_06380 PF00889 Elongation factor TS FIM01_06390 PF12833 Helix-turn-helix domain FIM01_06410 PF05036 Sporulation related domain FIM01_06410 PF03330 Lytic transglycolase FIM01_06415 PF13406 Transglycosylase SLT domain FIM01_06420 PF01098 Cell cycle protein FIM01_06430 PF14489 QueF-like protein FIM01_06430 PF14819 Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term FIM01_06435 PF01061 ABC-2 type transporter FIM01_06440 PF00005 ABC transporter FIM01_06445 PF00589 Phage integrase family FIM01_06485 PF06630 Enterobacterial exodeoxyribonuclease VIII FIM01_06485 PF12684 PDDEXK-like domain of unknown function (DUF3799) FIM01_06550 PF00772 DnaB-like helicase N terminal domain FIM01_06550 PF03796 DnaB-like helicase C terminal domain FIM01_06770 PF08525 Opacity-associated protein A N-terminal motif FIM01_06770 PF01551 Peptidase family M23 FIM01_06770 PF01476 LysM domain FIM01_06860 PF00464 Serine hydroxymethyltransferase FIM01_06865 PF02321 Outer membrane efflux protein FIM01_06870 PF00873 AcrB/AcrD/AcrF family FIM01_06875 PF13533 Biotin-lipoyl like FIM01_06880 PF03466 LysR substrate binding domain FIM01_06880 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FIM01_06885 PF00497 Bacterial extracellular solute-binding proteins, family 3 FIM01_06890 PF00528 Binding-protein-dependent transport system inner membrane component FIM01_06895 PF00528 Binding-protein-dependent transport system inner membrane component FIM01_06905 PF00893 Small Multidrug Resistance protein FIM01_06910 PF00037 4Fe-4S binding domain FIM01_06920 PF00392 Bacterial regulatory proteins, gntR family FIM01_06920 PF00155 Aminotransferase class I and II FIM01_06925 PF02567 Phenazine biosynthesis-like protein FIM01_06930 PF00175 Oxidoreductase NAD-binding domain FIM01_06930 PF00970 Oxidoreductase FAD-binding domain FIM01_06935 PF01980 tRNA-methyltransferase O FIM01_06935 PF18389 TrmO C-terminal domain FIM01_06945 PF00437 Type II/IV secretion system protein FIM01_06955 PF00486 Transcriptional regulatory protein, C terminal FIM01_06955 PF00072 Response regulator receiver domain FIM01_06960 PF08521 Two-component sensor kinase N-terminal FIM01_06960 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FIM01_06960 PF00512 His Kinase A (phospho-acceptor) domain FIM01_06970 PF00293 NUDIX domain FIM01_06980 PF00912 Transglycosylase FIM01_06980 PF00905 Penicillin binding protein transpeptidase domain FIM01_06980 PF14814 Bifunctional transglycosylase second domain FIM01_06985 PF01513 ATP-NAD kinase FIM01_06990 PF07023 Protein of unknown function (DUF1315) FIM01_06995 PF00591 Glycosyl transferase family, a/b domain FIM01_06995 PF02885 Glycosyl transferase family, helical bundle domain FIM01_07005 PF00375 Sodium:dicarboxylate symporter family FIM01_07010 PF02771 Acyl-CoA dehydrogenase, N-terminal domain FIM01_07010 PF00441 Acyl-CoA dehydrogenase, C-terminal domain FIM01_07010 PF02770 Acyl-CoA dehydrogenase, middle domain FIM01_07015 PF00756 Putative esterase FIM01_07020 PF00800 Prephenate dehydratase FIM01_07020 PF01842 ACT domain FIM01_07020 PF01817 Chorismate mutase type II FIM01_07025 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) FIM01_07035 PF07687 Peptidase dimerisation domain FIM01_07035 PF01546 Peptidase family M20/M25/M40 FIM01_07040 PF00753 Metallo-beta-lactamase superfamily FIM01_07050 PF03883 Peroxide stress protein YaaA FIM01_07055 PF05690 Thiazole biosynthesis protein ThiG FIM01_07065 PF04241 Protein of unknown function (DUF423) FIM01_07070 PF04542 Sigma-70 region 2 FIM01_07070 PF00140 Sigma-70 factor, region 1.2 FIM01_07070 PF04545 Sigma-70, region 4 FIM01_07080 PF00313 'Cold-shock' DNA-binding domain FIM01_07085 PF00271 Helicase conserved C-terminal domain FIM01_07085 PF00270 DEAD/DEAH box helicase FIM01_07095 PF00881 Nitroreductase family FIM01_07100 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus FIM01_07100 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus FIM01_07110 PF00589 Phage integrase family FIM01_07165 PF00717 Peptidase S24-like FIM01_07165 PF01381 Helix-turn-helix FIM01_07190 PF03796 DnaB-like helicase C terminal domain FIM01_07190 PF00772 DnaB-like helicase N terminal domain FIM01_07420 PF01476 LysM domain FIM01_07420 PF01551 Peptidase family M23 FIM01_07420 PF08525 Opacity-associated protein A N-terminal motif FIM01_07495 PF01180 Dihydroorotate dehydrogenase FIM01_07500 PF02674 Colicin V production protein FIM01_07505 PF00156 Phosphoribosyl transferase domain FIM01_07520 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain FIM01_07520 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain FIM01_07525 PF01435 Peptidase family M48 FIM01_07530 PF09424 Yqey-like protein FIM01_07535 PF01165 Ribosomal protein S21 FIM01_07540 PF00814 Glycoprotease family FIM01_07560 PF00069 Protein kinase domain FIM01_07585 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FIM01_07585 PF03466 LysR substrate binding domain FIM01_07590 PF00202 Aminotransferase class-III FIM01_07595 PF00171 Aldehyde dehydrogenase family FIM01_07600 PF00324 Amino acid permease FIM01_07630 PF04076 Bacterial OB fold (BOF) protein FIM01_07655 PF00561 alpha/beta hydrolase fold FIM01_07660 PF03616 Sodium/glutamate symporter FIM01_07670 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FIM01_07670 PF03466 LysR substrate binding domain FIM01_07675 PF00248 Aldo/keto reductase family FIM01_07680 PF00106 short chain dehydrogenase FIM01_07695 PF07729 FCD domain FIM01_07695 PF00392 Bacterial regulatory proteins, gntR family FIM01_07755 PF00083 Sugar (and other) transporter FIM01_07755 PF08946 Osmosensory transporter coiled coil FIM01_07780 PF04403 Paraquat-inducible protein A FIM01_07785 PF02470 MlaD protein FIM01_07795 PF00576 HIUase/Transthyretin family FIM01_07805 PF00072 Response regulator receiver domain FIM01_07805 PF00486 Transcriptional regulatory protein, C terminal FIM01_07810 PF00672 HAMP domain FIM01_07810 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FIM01_07810 PF00512 His Kinase A (phospho-acceptor) domain FIM01_07850 PF00512 His Kinase A (phospho-acceptor) domain FIM01_07850 PF08521 Two-component sensor kinase N-terminal FIM01_07850 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FIM01_07855 PF00486 Transcriptional regulatory protein, C terminal FIM01_07855 PF00072 Response regulator receiver domain FIM01_07875 PF01177 Asp/Glu/Hydantoin racemase FIM01_07880 PF00892 EamA-like transporter family FIM01_07885 PF07995 Glucose / Sorbosone dehydrogenase FIM01_07905 PF00375 Sodium:dicarboxylate symporter family FIM01_07915 PF16123 Hydroxyacylglutathione hydrolase C-terminus FIM01_07915 PF00753 Metallo-beta-lactamase superfamily FIM01_07920 PF00528 Binding-protein-dependent transport system inner membrane component FIM01_07925 PF00005 ABC transporter FIM01_07925 PF09383 NIL domain FIM01_07930 PF03180 NLPA lipoprotein FIM01_07935 PF02844 Phosphoribosylglycinamide synthetase, N domain FIM01_07935 PF02843 Phosphoribosylglycinamide synthetase, C domain FIM01_07935 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain FIM01_07940 PF01808 AICARFT/IMPCHase bienzyme FIM01_07940 PF02142 MGS-like domain FIM01_07945 PF02954 Bacterial regulatory protein, Fis family FIM01_07965 PF01134 Glucose inhibited division protein A FIM01_07965 PF13932 GidA associated domain FIM01_07975 PF14403 Circularly permuted ATP-grasp type 2 FIM01_07985 PF01841 Transglutaminase-like superfamily FIM01_07985 PF08379 Bacterial transglutaminase-like N-terminal region FIM01_07995 PF00842 Alanine racemase, C-terminal domain FIM01_07995 PF01168 Alanine racemase, N-terminal domain FIM01_08000 PF03796 DnaB-like helicase C terminal domain FIM01_08000 PF00772 DnaB-like helicase N terminal domain FIM01_08005 PF03948 Ribosomal protein L9, C-terminal domain FIM01_08005 PF01281 Ribosomal protein L9, N-terminal domain FIM01_08010 PF01084 Ribosomal protein S18 FIM01_08015 PF01250 Ribosomal protein S6 FIM01_08020 PF01040 UbiA prenyltransferase family FIM01_08025 PF03626 Prokaryotic Cytochrome C oxidase subunit IV FIM01_08030 PF00510 Cytochrome c oxidase subunit III FIM01_08035 PF00115 Cytochrome C and Quinol oxidase polypeptide I FIM01_08040 PF06481 COX Aromatic Rich Motif FIM01_08040 PF00116 Cytochrome C oxidase subunit II, periplasmic domain FIM01_08050 PF00391 PEP-utilising enzyme, mobile domain FIM01_08050 PF02896 PEP-utilising enzyme, TIM barrel domain FIM01_08050 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain FIM01_08055 PF03618 Kinase/pyrophosphorylase FIM01_08065 PF01522 Polysaccharide deacetylase FIM01_08065 PF14883 Hypothetical glycosyl hydrolase family 13 FIM01_08070 PF00535 Glycosyl transferase family 2 FIM01_08075 PF13994 PgaD-like protein FIM01_08085 PF00296 Luciferase-like monooxygenase FIM01_08105 PF03466 LysR substrate binding domain FIM01_08105 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FIM01_08115 PF00472 RF-1 domain FIM01_08115 PF03462 PCRF domain FIM01_08120 PF17827 PrmC N-terminal domain FIM01_08120 PF13847 Methyltransferase domain FIM01_08125 PF00528 Binding-protein-dependent transport system inner membrane component FIM01_08130 PF09084 NMT1/THI5 like FIM01_08135 PF12833 Helix-turn-helix domain FIM01_08140 PF00106 short chain dehydrogenase FIM01_08145 PF00441 Acyl-CoA dehydrogenase, C-terminal domain FIM01_08145 PF02770 Acyl-CoA dehydrogenase, middle domain FIM01_08145 PF02771 Acyl-CoA dehydrogenase, N-terminal domain FIM01_08150 PF00501 AMP-binding enzyme FIM01_08150 PF13193 AMP-binding enzyme C-terminal domain FIM01_08155 PF01613 Flavin reductase like domain FIM01_08160 PF00899 ThiF family FIM01_08165 PF03109 ABC1 family FIM01_08180 PF03814 Potassium-transporting ATPase A subunit FIM01_08190 PF02669 K+-transporting ATPase, c chain FIM01_08195 PF13493 Domain of unknown function (DUF4118) FIM01_08195 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FIM01_08195 PF00512 His Kinase A (phospho-acceptor) domain FIM01_08195 PF02702 Osmosensitive K+ channel His kinase sensor domain FIM01_08200 PF00486 Transcriptional regulatory protein, C terminal FIM01_08200 PF00072 Response regulator receiver domain FIM01_08205 PF00120 Glutamine synthetase, catalytic domain FIM01_08215 PF03232 Ubiquinone biosynthesis protein COQ7 FIM01_08220 PF07690 Major Facilitator Superfamily FIM01_08225 PF01103 Surface antigen FIM01_08225 PF07244 Surface antigen variable number repeat FIM01_08225 PF17243 POTRA domain TamA domain 1 FIM01_08245 PF00330 Aconitase family (aconitate hydratase) FIM01_08245 PF06434 Aconitate hydratase 2 N-terminus FIM01_08245 PF11791 Aconitate B N-terminal domain FIM01_08255 PF00027 Cyclic nucleotide-binding domain FIM01_08255 PF00520 Ion transport protein FIM01_08260 PF07690 Major Facilitator Superfamily FIM01_08275 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FIM01_08275 PF03466 LysR substrate binding domain FIM01_08280 PF04284 Protein of unknown function (DUF441) FIM01_08290 PF00849 RNA pseudouridylate synthase FIM01_08290 PF01479 S4 domain FIM01_08305 PF00849 RNA pseudouridylate synthase FIM01_08305 PF01479 S4 domain FIM01_08310 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE FIM01_08315 PF01119 DNA mismatch repair protein, C-terminal domain FIM01_08315 PF08676 MutL C terminal dimerisation domain FIM01_08325 PF17209 Hfq protein FIM01_08335 PF00881 Nitroreductase family FIM01_08345 PF00149 Calcineurin-like phosphoesterase FIM01_08350 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD FIM01_08355 PF00749 tRNA synthetases class I (E and Q), catalytic domain FIM01_08355 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain FIM01_08360 PF02540 NAD synthase FIM01_08360 PF00117 Glutamine amidotransferase class-I FIM01_08360 PF00958 GMP synthase C terminal domain FIM01_08365 PF05985 Ethanolamine ammonia-lyase light chain (EutC) FIM01_08370 PF06751 Ethanolamine ammonia lyase large subunit (EutB) FIM01_08375 PF13520 Amino acid permease FIM01_08380 PF00171 Aldehyde dehydrogenase family FIM01_08395 PF00465 Iron-containing alcohol dehydrogenase FIM01_08400 PF05970 PIF1-like helicase FIM01_08400 PF14493 Helix-turn-helix domain FIM01_08410 PF02110 Hydroxyethylthiazole kinase family FIM01_08425 PF17432 Domain of unknown function (DUF3458_C) ARM repeats FIM01_08425 PF11940 Domain of unknown function (DUF3458) Ig-like fold FIM01_08425 PF01433 Peptidase family M1 domain FIM01_08440 PF13953 PapC C-terminal domain FIM01_08440 PF13954 PapC N-terminal domain FIM01_08440 PF00577 Outer membrane usher protein FIM01_08465 PF01817 Chorismate mutase type II FIM01_08470 PF01037 Lrp/AsnC ligand binding domain FIM01_08485 PF02224 Cytidylate kinase FIM01_08505 PF00440 Bacterial regulatory proteins, tetR family FIM01_08510 PF00593 TonB dependent receptor FIM01_08510 PF07715 TonB-dependent Receptor Plug Domain FIM01_08515 PF00924 Mechanosensitive ion channel FIM01_08545 PF07715 TonB-dependent Receptor Plug Domain FIM01_08545 PF00593 TonB dependent receptor FIM01_08565 PF12848 ABC transporter FIM01_08565 PF00005 ABC transporter FIM01_08570 PF00582 Universal stress protein family FIM01_08585 PF00690 Cation transporter/ATPase, N-terminus FIM01_08585 PF00689 Cation transporting ATPase, C-terminus FIM01_08590 PF02308 MgtC family FIM01_08600 PF01037 Lrp/AsnC ligand binding domain FIM01_08605 PF01810 LysE type translocator FIM01_08615 PF03466 LysR substrate binding domain FIM01_08615 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FIM01_08625 PF00108 Thiolase, N-terminal domain FIM01_08625 PF02803 Thiolase, C-terminal domain FIM01_08650 PF07690 Major Facilitator Superfamily FIM01_08655 PF12169 DNA polymerase III subunits gamma and tau domain III FIM01_08655 PF12170 DNA polymerase III tau subunit V interacting with alpha FIM01_08655 PF12168 DNA polymerase III subunits tau domain IV DnaB-binding FIM01_08660 PF04185 Phosphoesterase family FIM01_08660 PF05506 Domain of unknown function (DUF756) FIM01_08665 PF03061 Thioesterase superfamily FIM01_08670 PF00465 Iron-containing alcohol dehydrogenase FIM01_08680 PF01451 Low molecular weight phosphotyrosine protein phosphatase FIM01_08685 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain FIM01_08685 PF01565 FAD binding domain FIM01_08700 PF01645 Conserved region in glutamate synthase FIM01_08720 PF12832 MFS_1 like family FIM01_08730 PF02785 Biotin carboxylase C-terminal domain FIM01_08730 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain FIM01_08730 PF00289 Biotin carboxylase, N-terminal domain FIM01_08735 PF00364 Biotin-requiring enzyme FIM01_08740 PF01220 Dehydroquinase class II FIM01_08745 PF00817 impB/mucB/samB family FIM01_08745 PF13438 Domain of unknown function (DUF4113) FIM01_08745 PF11799 impB/mucB/samB family C-terminal domain FIM01_08755 PF00005 ABC transporter FIM01_08760 PF00072 Response regulator receiver domain FIM01_08760 PF00486 Transcriptional regulatory protein, C terminal FIM01_08770 PF13806 Rieske-like [2Fe-2S] domain FIM01_08770 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain FIM01_08770 PF18267 Rubredoxin NAD+ reductase C-terminal domain FIM01_08770 PF01077 Nitrite and sulphite reductase 4Fe-4S domain FIM01_08770 PF04324 BFD-like [2Fe-2S] binding domain FIM01_08770 PF07992 Pyridine nucleotide-disulphide oxidoreductase FIM01_08775 PF04324 BFD-like [2Fe-2S] binding domain FIM01_08775 PF01077 Nitrite and sulphite reductase 4Fe-4S domain FIM01_08775 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain FIM01_08775 PF07992 Pyridine nucleotide-disulphide oxidoreductase FIM01_08775 PF18267 Rubredoxin NAD+ reductase C-terminal domain FIM01_08780 PF04324 BFD-like [2Fe-2S] binding domain FIM01_08780 PF04879 Molybdopterin oxidoreductase Fe4S4 domain FIM01_08780 PF00384 Molybdopterin oxidoreductase FIM01_08780 PF01568 Molydopterin dinucleotide binding domain FIM01_08785 PF12804 MobA-like NTP transferase domain FIM01_08790 PF01568 Molydopterin dinucleotide binding domain FIM01_08790 PF00384 Molybdopterin oxidoreductase FIM01_08790 PF04879 Molybdopterin oxidoreductase Fe4S4 domain FIM01_08795 PF06463 Molybdenum Cofactor Synthesis C FIM01_08795 PF04055 Radical SAM superfamily FIM01_08805 PF02391 MoaE protein FIM01_08810 PF00994 Probable molybdopterin binding domain FIM01_08810 PF01967 MoaC family FIM01_08815 PF03454 MoeA C-terminal region (domain IV) FIM01_08815 PF03453 MoeA N-terminal region (domain I and II) FIM01_08815 PF00994 Probable molybdopterin binding domain FIM01_08820 PF01638 HxlR-like helix-turn-helix FIM01_08825 PF00155 Aminotransferase class I and II FIM01_08825 PF00392 Bacterial regulatory proteins, gntR family FIM01_08830 PF00892 EamA-like transporter family FIM01_08850 PF02635 DsrE/DsrF-like family FIM01_08855 PF16363 GDP-mannose 4,6 dehydratase FIM01_08860 PF10415 Fumarase C C-terminus FIM01_08860 PF00206 Lyase FIM01_08885 PF01266 FAD dependent oxidoreductase FIM01_08895 PF02542 YgbB family FIM01_08905 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain FIM01_08905 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain FIM01_08910 PF00440 Bacterial regulatory proteins, tetR family FIM01_08915 PF00072 Response regulator receiver domain FIM01_08915 PF00158 Sigma-54 interaction domain FIM01_08915 PF02954 Bacterial regulatory protein, Fis family FIM01_08920 PF00512 His Kinase A (phospho-acceptor) domain FIM01_08920 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FIM01_08920 PF00989 PAS fold FIM01_08930 PF04055 Radical SAM superfamily FIM01_08930 PF00919 Uncharacterized protein family UPF0004 FIM01_08930 PF18693 TRAM domain FIM01_08935 PF00696 Amino acid kinase family FIM01_08940 PF01765 Ribosome recycling factor FIM01_08945 PF01255 Putative undecaprenyl diphosphate synthase FIM01_08955 PF13288 DXP reductoisomerase C-terminal domain FIM01_08955 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase FIM01_08955 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain FIM01_08960 PF13180 PDZ domain FIM01_08960 PF02163 Peptidase family M50 FIM01_08960 PF17820 PDZ domain FIM01_08965 PF07244 Surface antigen variable number repeat FIM01_08965 PF01103 Surface antigen FIM01_08975 PF00132 Bacterial transferase hexapeptide (six repeats) FIM01_08975 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD FIM01_08980 PF07977 FabA-like domain FIM01_08985 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 FIM01_08985 PF00132 Bacterial transferase hexapeptide (six repeats) FIM01_09000 PF02631 RecX family FIM01_09005 PF00154 recA bacterial DNA recombination protein FIM01_09010 PF01479 S4 domain FIM01_09015 PF13419 Haloacid dehalogenase-like hydrolase FIM01_09040 PF01037 Lrp/AsnC ligand binding domain FIM01_09045 PF00266 Aminotransferase class-V FIM01_09050 PF00324 Amino acid permease FIM01_09060 PF00082 Subtilase family FIM01_09060 PF05922 Peptidase inhibitor I9 FIM01_09065 PF01740 STAS domain FIM01_09065 PF00916 Sulfate permease family FIM01_09070 PF02586 SOS response associated peptidase (SRAP) FIM01_09075 PF07995 Glucose / Sorbosone dehydrogenase FIM01_09085 PF03707 Bacterial signalling protein N terminal repeat FIM01_09085 PF00563 EAL domain FIM01_09085 PF00990 Diguanylate cyclase, GGDEF domain FIM01_09105 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit FIM01_09105 PF02378 Phosphotransferase system, EIIC FIM01_09110 PF00294 pfkB family carbohydrate kinase FIM01_09115 PF00381 PTS HPr component phosphorylation site FIM01_09115 PF02896 PEP-utilising enzyme, TIM barrel domain FIM01_09115 PF00391 PEP-utilising enzyme, mobile domain FIM01_09115 PF05524 PEP-utilising enzyme, N-terminal FIM01_09115 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 FIM01_09140 PF05525 Branched-chain amino acid transport protein FIM01_09150 PF00557 Metallopeptidase family M24 FIM01_09155 PF03466 LysR substrate binding domain FIM01_09155 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FIM01_09165 PF00462 Glutaredoxin FIM01_09170 PF00202 Aminotransferase class-III FIM01_09175 PF00478 IMP dehydrogenase / GMP reductase domain FIM01_09175 PF00571 CBS domain FIM01_09200 PF00448 SRP54-type protein, GTPase domain FIM01_09200 PF02881 SRP54-type protein, helical bundle domain FIM01_09210 PF09829 Uncharacterized protein conserved in bacteria (DUF2057) FIM01_09220 PF08173 Membrane bound YbgT-like protein FIM01_09225 PF02322 Cytochrome bd terminal oxidase subunit II FIM01_09230 PF01654 Cytochrome bd terminal oxidase subunit I FIM01_09240 PF13737 Transposase DDE domain FIM01_09245 PF07290 Protein of unknown function (DUF1449) FIM01_09255 PF00294 pfkB family carbohydrate kinase FIM01_09260 PF00593 TonB dependent receptor FIM01_09260 PF07715 TonB-dependent Receptor Plug Domain FIM01_09265 PF08367 Peptidase M16C associated FIM01_09265 PF00675 Insulinase (Peptidase family M16) FIM01_09265 PF05193 Peptidase M16 inactive domain FIM01_09270 PF02253 Phospholipase A1 FIM01_09275 PF02386 Cation transport protein FIM01_09280 PF02080 TrkA-C domain FIM01_09280 PF02254 TrkA-N domain FIM01_09285 PF00291 Pyridoxal-phosphate dependent enzyme FIM01_09285 PF00585 C-terminal regulatory domain of Threonine dehydratase FIM01_09290 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) FIM01_09305 PF01118 Semialdehyde dehydrogenase, NAD binding domain FIM01_09305 PF02774 Semialdehyde dehydrogenase, dimerisation domain FIM01_09315 PF02617 ATP-dependent Clp protease adaptor protein ClpS FIM01_09320 PF10431 C-terminal, D2-small domain, of ClpB protein FIM01_09320 PF00004 ATPase family associated with various cellular activities (AAA) FIM01_09320 PF07724 AAA domain (Cdc48 subfamily) FIM01_09320 PF17871 AAA lid domain FIM01_09320 PF02861 Clp amino terminal domain, pathogenicity island component FIM01_09325 PF02694 Uncharacterised BCR, YnfA/UPF0060 family FIM01_09330 PF00793 DAHP synthetase I family FIM01_09345 PF07992 Pyridine nucleotide-disulphide oxidoreductase FIM01_09345 PF00724 NADH:flavin oxidoreductase / NADH oxidase family FIM01_09375 PF00117 Glutamine amidotransferase class-I FIM01_09375 PF06418 CTP synthase N-terminus FIM01_09380 PF00793 DAHP synthetase I family FIM01_09385 PF00113 Enolase, C-terminal TIM barrel domain FIM01_09385 PF03952 Enolase, N-terminal domain FIM01_09390 PF04239 Protein of unknown function (DUF421) FIM01_09395 PF04977 Septum formation initiator FIM01_09400 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase FIM01_09405 PF01144 Coenzyme A transferase FIM01_09410 PF01144 Coenzyme A transferase FIM01_09415 PF02803 Thiolase, C-terminal domain FIM01_09415 PF00108 Thiolase, N-terminal domain FIM01_09420 PF00206 Lyase FIM01_09420 PF10397 Adenylosuccinate lyase C-terminus FIM01_09425 PF00561 alpha/beta hydrolase fold FIM01_09430 PF07690 Major Facilitator Superfamily FIM01_09435 PF02627 Carboxymuconolactone decarboxylase family FIM01_09440 PF12391 Protocatechuate 3,4-dioxygenase beta subunit N terminal FIM01_09440 PF00775 Dioxygenase FIM01_09445 PF00775 Dioxygenase FIM01_09450 PF01487 Type I 3-dehydroquinase FIM01_09455 PF05048 Periplasmic copper-binding protein (NosD) FIM01_09460 PF04966 Carbohydrate-selective porin, OprB family FIM01_09465 PF01011 PQQ enzyme repeat FIM01_09465 PF13360 PQQ-like domain FIM01_09475 PF04143 Sulphur transport FIM01_09485 PF00753 Metallo-beta-lactamase superfamily FIM01_09490 PF09339 IclR helix-turn-helix domain FIM01_09490 PF01614 Bacterial transcriptional regulator FIM01_09495 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FIM01_09495 PF03466 LysR substrate binding domain FIM01_09500 PF00441 Acyl-CoA dehydrogenase, C-terminal domain FIM01_09500 PF02770 Acyl-CoA dehydrogenase, middle domain FIM01_09500 PF02771 Acyl-CoA dehydrogenase, N-terminal domain FIM01_09515 PF00106 short chain dehydrogenase FIM01_09525 PF07690 Major Facilitator Superfamily FIM01_09535 PF01425 Amidase FIM01_09540 PF08028 Acyl-CoA dehydrogenase, C-terminal domain FIM01_09555 PF00355 Rieske [2Fe-2S] domain FIM01_09555 PF00848 Ring hydroxylating alpha subunit (catalytic domain) FIM01_09570 PF00111 2Fe-2S iron-sulfur cluster binding domain FIM01_09570 PF00175 Oxidoreductase NAD-binding domain FIM01_09575 PF01613 Flavin reductase like domain FIM01_09580 PF12833 Helix-turn-helix domain FIM01_09580 PF02311 AraC-like ligand binding domain FIM01_09585 PF07833 Copper amine oxidase N-terminal domain FIM01_09585 PF02727 Copper amine oxidase, N2 domain FIM01_09585 PF01179 Copper amine oxidase, enzyme domain FIM01_09585 PF02728 Copper amine oxidase, N3 domain FIM01_09595 PF00171 Aldehyde dehydrogenase family FIM01_09600 PF01804 Penicillin amidase FIM01_09605 PF12146 Serine aminopeptidase, S33 FIM01_09610 PF00108 Thiolase, N-terminal domain FIM01_09610 PF02803 Thiolase, C-terminal domain FIM01_09620 PF01144 Coenzyme A transferase FIM01_09625 PF01144 Coenzyme A transferase FIM01_09630 PF04444 Catechol dioxygenase N terminus FIM01_09630 PF00775 Dioxygenase FIM01_09635 PF02426 Muconolactone delta-isomerase FIM01_09640 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain FIM01_09640 PF13378 Enolase C-terminal domain-like FIM01_09645 PF03466 LysR substrate binding domain FIM01_09645 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FIM01_09655 PF07729 FCD domain FIM01_09655 PF00392 Bacterial regulatory proteins, gntR family FIM01_09660 PF00920 Dehydratase family FIM01_09665 PF07690 Major Facilitator Superfamily FIM01_09675 PF00171 Aldehyde dehydrogenase family FIM01_09685 PF00561 alpha/beta hydrolase fold FIM01_09690 PF00724 NADH:flavin oxidoreductase / NADH oxidase family FIM01_09690 PF07992 Pyridine nucleotide-disulphide oxidoreductase FIM01_09695 PF00106 short chain dehydrogenase FIM01_09705 PF09278 MerR, DNA binding FIM01_09705 PF00376 MerR family regulatory protein FIM01_09715 PF07992 Pyridine nucleotide-disulphide oxidoreductase FIM01_09725 PF12706 Beta-lactamase superfamily domain FIM01_09730 PF00440 Bacterial regulatory proteins, tetR family FIM01_09730 PF08359 YsiA-like protein, C-terminal region FIM01_09735 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term FIM01_09735 PF12833 Helix-turn-helix domain FIM01_09740 PF00106 short chain dehydrogenase FIM01_09745 PF06314 Acetoacetate decarboxylase (ADC) FIM01_09755 PF00724 NADH:flavin oxidoreductase / NADH oxidase family FIM01_09760 PF07995 Glucose / Sorbosone dehydrogenase FIM01_09775 PF00857 Isochorismatase family FIM01_09780 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FIM01_09780 PF03466 LysR substrate binding domain FIM01_09785 PF07995 Glucose / Sorbosone dehydrogenase FIM01_09790 PF02254 TrkA-N domain FIM01_09790 PF00999 Sodium/hydrogen exchanger family FIM01_09800 PF01546 Peptidase family M20/M25/M40 FIM01_09800 PF07687 Peptidase dimerisation domain FIM01_09850 PF10077 Uncharacterized protein conserved in bacteria (DUF2314) FIM01_09855 PF07690 Major Facilitator Superfamily FIM01_09860 PF04909 Amidohydrolase FIM01_09875 PF08450 SMP-30/Gluconolactonase/LRE-like region FIM01_09885 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FIM01_09885 PF03466 LysR substrate binding domain FIM01_09900 PF00529 HlyD membrane-fusion protein of T1SS FIM01_09900 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion FIM01_09915 PF00171 Aldehyde dehydrogenase family FIM01_09920 PF00920 Dehydratase family FIM01_09930 PF03466 LysR substrate binding domain FIM01_09930 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FIM01_09935 PF01370 NAD dependent epimerase/dehydratase family FIM01_09940 PF07690 Major Facilitator Superfamily FIM01_09945 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase FIM01_09945 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase FIM01_09960 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase FIM01_09960 PF14572 Phosphoribosyl synthetase-associated domain FIM01_09965 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family FIM01_09980 PF03472 Autoinducer binding domain FIM01_09980 PF00196 Bacterial regulatory proteins, luxR family FIM01_09985 PF01425 Amidase FIM01_09990 PF13533 Biotin-lipoyl like FIM01_09995 PF07690 Major Facilitator Superfamily FIM01_10020 PF01975 Survival protein SurE FIM01_10030 PF13291 ACT domain FIM01_10030 PF04607 Region found in RelA / SpoT proteins FIM01_10030 PF02824 TGS domain FIM01_10035 PF04851 Type III restriction enzyme, res subunit FIM01_10035 PF17757 UvrB interaction domain FIM01_10035 PF12344 Ultra-violet resistance protein B FIM01_10035 PF02151 UvrB/uvrC motif FIM01_10035 PF00271 Helicase conserved C-terminal domain FIM01_10070 PF13673 Acetyltransferase (GNAT) domain FIM01_10075 PF12146 Serine aminopeptidase, S33 FIM01_10080 PF03466 LysR substrate binding domain FIM01_10080 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FIM01_10095 PF12146 Serine aminopeptidase, S33 FIM01_10100 PF02311 AraC-like ligand binding domain FIM01_10100 PF12833 Helix-turn-helix domain FIM01_10110 PF00672 HAMP domain FIM01_10110 PF16527 Two-component sensor protein CpxA, periplasmic domain FIM01_10110 PF00512 His Kinase A (phospho-acceptor) domain FIM01_10110 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FIM01_10115 PF00072 Response regulator receiver domain FIM01_10115 PF00486 Transcriptional regulatory protein, C terminal FIM01_10120 PF00529 HlyD membrane-fusion protein of T1SS FIM01_10120 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion FIM01_10125 PF00873 AcrB/AcrD/AcrF family FIM01_10130 PF02321 Outer membrane efflux protein FIM01_10135 PF12146 Serine aminopeptidase, S33 FIM01_10140 PF00743 Flavin-binding monooxygenase-like FIM01_10150 PF01266 FAD dependent oxidoreductase FIM01_10420 PF16970 Type-1 fimbrial protein, A FIM01_10425 PF02753 Pili assembly chaperone PapD, C-terminal domain FIM01_10425 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain FIM01_10430 PF13953 PapC C-terminal domain FIM01_10430 PF13954 PapC N-terminal domain FIM01_10430 PF00577 Outer membrane usher protein FIM01_10445 PF08240 Alcohol dehydrogenase GroES-like domain FIM01_10445 PF00107 Zinc-binding dehydrogenase FIM01_10455 PF00199 Catalase FIM01_10470 PF13091 PLD-like domain FIM01_10490 PF01244 Membrane dipeptidase (Peptidase family M19) FIM01_10495 PF13186 Iron-sulfur cluster-binding domain FIM01_10495 PF04055 Radical SAM superfamily FIM01_10500 PF05402 Coenzyme PQQ synthesis protein D (PqqD) FIM01_10505 PF03070 TENA/THI-4/PQQC family FIM01_10510 PF12706 Beta-lactamase superfamily domain FIM01_10515 PF08042 PqqA family FIM01_10520 PF02503 Polyphosphate kinase middle domain FIM01_10520 PF13090 Polyphosphate kinase C-terminal domain 2 FIM01_10520 PF17941 Polyphosphate kinase C-terminal domain 1 FIM01_10520 PF13089 Polyphosphate kinase N-terminal domain FIM01_10525 PF00149 Calcineurin-like phosphoesterase FIM01_10535 PF00857 Isochorismatase family FIM01_10535 PF00550 Phosphopantetheine attachment site FIM01_10540 PF00106 short chain dehydrogenase FIM01_10545 PF00005 ABC transporter FIM01_10545 PF03459 TOBE domain FIM01_10550 PF00528 Binding-protein-dependent transport system inner membrane component FIM01_10560 PF03459 TOBE domain FIM01_10560 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FIM01_10565 PF00355 Rieske [2Fe-2S] domain FIM01_10565 PF00848 Ring hydroxylating alpha subunit (catalytic domain) FIM01_10570 PF00866 Ring hydroxylating beta subunit FIM01_10575 PF00970 Oxidoreductase FAD-binding domain FIM01_10575 PF00111 2Fe-2S iron-sulfur cluster binding domain FIM01_10575 PF00175 Oxidoreductase NAD-binding domain FIM01_10585 PF12833 Helix-turn-helix domain FIM01_10585 PF14525 AraC-binding-like domain FIM01_10595 PF01613 Flavin reductase like domain FIM01_10610 PF01738 Dienelactone hydrolase family FIM01_10615 PF07690 Major Facilitator Superfamily FIM01_10620 PF06719 AraC-type transcriptional regulator N-terminus FIM01_10620 PF12833 Helix-turn-helix domain FIM01_10640 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FIM01_10640 PF03466 LysR substrate binding domain FIM01_10645 PF01144 Coenzyme A transferase FIM01_10650 PF01144 Coenzyme A transferase FIM01_10655 PF02667 Short chain fatty acid transporter FIM01_10660 PF02803 Thiolase, C-terminal domain FIM01_10660 PF00108 Thiolase, N-terminal domain FIM01_10665 PF03466 LysR substrate binding domain FIM01_10665 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FIM01_10670 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FIM01_10670 PF03466 LysR substrate binding domain FIM01_10685 PF00206 Lyase FIM01_10685 PF10415 Fumarase C C-terminus FIM01_10690 PF07715 TonB-dependent Receptor Plug Domain FIM01_10690 PF00593 TonB dependent receptor FIM01_10695 PF00083 Sugar (and other) transporter FIM01_10710 PF00005 ABC transporter FIM01_10715 PF00528 Binding-protein-dependent transport system inner membrane component FIM01_10720 PF04069 Substrate binding domain of ABC-type glycine betaine transport system FIM01_10745 PF02525 Flavodoxin-like fold FIM01_10750 PF01638 HxlR-like helix-turn-helix FIM01_10755 PF06445 GyrI-like small molecule binding domain FIM01_10755 PF12833 Helix-turn-helix domain FIM01_10770 PF01925 Sulfite exporter TauE/SafE FIM01_10775 PF04273 Putative phosphatase (DUF442) FIM01_10775 PF00753 Metallo-beta-lactamase superfamily FIM01_10780 PF04273 Putative phosphatase (DUF442) FIM01_10780 PF00753 Metallo-beta-lactamase superfamily FIM01_10785 PF02954 Bacterial regulatory protein, Fis family FIM01_10785 PF00158 Sigma-54 interaction domain FIM01_10785 PF00072 Response regulator receiver domain FIM01_10790 PF01062 Bestrophin, RFP-TM, chloride channel FIM01_10795 PF08240 Alcohol dehydrogenase GroES-like domain FIM01_10795 PF00107 Zinc-binding dehydrogenase FIM01_10800 PF00106 short chain dehydrogenase FIM01_10805 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain FIM01_10805 PF07992 Pyridine nucleotide-disulphide oxidoreductase FIM01_10810 PF00364 Biotin-requiring enzyme FIM01_10810 PF02817 e3 binding domain FIM01_10810 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) FIM01_10815 PF02780 Transketolase, C-terminal domain FIM01_10815 PF02779 Transketolase, pyrimidine binding domain FIM01_10820 PF00676 Dehydrogenase E1 component FIM01_10825 PF04055 Radical SAM superfamily FIM01_10840 PF00990 Diguanylate cyclase, GGDEF domain FIM01_10840 PF08448 PAS fold FIM01_10845 PF01264 Chorismate synthase FIM01_10850 PF05175 Methyltransferase small domain FIM01_10855 PF00291 Pyridoxal-phosphate dependent enzyme FIM01_10865 PF17862 AAA+ lid domain FIM01_10865 PF00004 ATPase family associated with various cellular activities (AAA) FIM01_10865 PF01434 Peptidase family M41 FIM01_10875 PF05166 YcgL domain FIM01_10895 PF00570 HRDC domain FIM01_10895 PF01612 3'-5' exonuclease FIM01_10900 PF02132 RecR protein FIM01_10900 PF13662 Toprim domain FIM01_10905 PF02575 YbaB/EbfC DNA-binding family FIM01_10915 PF01053 Cys/Met metabolism PLP-dependent enzyme FIM01_10920 PF00561 alpha/beta hydrolase fold FIM01_10925 PF08241 Methyltransferase domain FIM01_10955 PF01230 HIT domain FIM01_10980 PF02684 Lipid-A-disaccharide synthetase FIM01_10985 PF00593 TonB dependent receptor FIM01_10985 PF07715 TonB-dependent Receptor Plug Domain FIM01_11005 PF01925 Sulfite exporter TauE/SafE FIM01_11010 PF00793 DAHP synthetase I family FIM01_11015 PF02654 Cobalamin-5-phosphate synthase FIM01_11025 PF00300 Histidine phosphatase superfamily (branch 1) FIM01_11030 PF02277 Phosphoribosyltransferase FIM01_11035 PF02283 Cobinamide kinase / cobinamide phosphate guanyltransferase FIM01_11045 PF13419 Haloacid dehalogenase-like hydrolase FIM01_11070 PF00593 TonB dependent receptor FIM01_11070 PF07715 TonB-dependent Receptor Plug Domain FIM01_11075 PF03737 Aldolase/RraA FIM01_11085 PF04183 IucA / IucC family FIM01_11085 PF06276 Ferric iron reductase FhuF-like transporter FIM01_11090 PF06276 Ferric iron reductase FhuF-like transporter FIM01_11090 PF04183 IucA / IucC family FIM01_11095 PF07690 Major Facilitator Superfamily FIM01_11100 PF13434 L-lysine 6-monooxygenase (NADPH-requiring) FIM01_11105 PF06276 Ferric iron reductase FhuF-like transporter FIM01_11105 PF04183 IucA / IucC family FIM01_11110 PF04073 Aminoacyl-tRNA editing domain FIM01_11120 PF03109 ABC1 family FIM01_11125 PF00441 Acyl-CoA dehydrogenase, C-terminal domain FIM01_11125 PF02771 Acyl-CoA dehydrogenase, N-terminal domain FIM01_11125 PF02770 Acyl-CoA dehydrogenase, middle domain FIM01_11130 PF00441 Acyl-CoA dehydrogenase, C-terminal domain FIM01_11130 PF02770 Acyl-CoA dehydrogenase, middle domain FIM01_11130 PF02771 Acyl-CoA dehydrogenase, N-terminal domain FIM01_11135 PF00487 Fatty acid desaturase FIM01_11140 PF12852 Cupin FIM01_11140 PF12833 Helix-turn-helix domain FIM01_11145 PF00639 PPIC-type PPIASE domain FIM01_11145 PF09312 SurA N-terminal domain FIM01_11150 PF00216 Bacterial DNA-binding protein FIM01_11165 PF02082 Transcriptional regulator FIM01_11170 PF00266 Aminotransferase class-V FIM01_11175 PF01592 NifU-like N terminal domain FIM01_11180 PF01521 Iron-sulphur cluster biosynthesis FIM01_11185 PF00226 DnaJ domain FIM01_11185 PF07743 HSCB C-terminal oligomerisation domain FIM01_11190 PF00012 Hsp70 protein FIM01_11195 PF00111 2Fe-2S iron-sulfur cluster binding domain FIM01_11200 PF00211 Adenylate and Guanylate cyclase catalytic domain FIM01_11210 PF02559 CarD-like/TRCF domain FIM01_11210 PF17757 UvrB interaction domain FIM01_11210 PF00270 DEAD/DEAH box helicase FIM01_11210 PF03461 TRCF domain FIM01_11210 PF00271 Helicase conserved C-terminal domain FIM01_11230 PF03737 Aldolase/RraA FIM01_11235 PF13460 NAD(P)H-binding FIM01_11240 PF01649 Ribosomal protein S20 FIM01_11250 PF00459 Inositol monophosphatase family FIM01_11265 PF00005 ABC transporter FIM01_11265 PF08352 Oligopeptide/dipeptide transporter, C-terminal region FIM01_11270 PF00528 Binding-protein-dependent transport system inner membrane component FIM01_11275 PF00528 Binding-protein-dependent transport system inner membrane component FIM01_11280 PF01432 Peptidase family M3 FIM01_11295 PF00593 TonB dependent receptor FIM01_11295 PF07715 TonB-dependent Receptor Plug Domain FIM01_11300 PF03544 Gram-negative bacterial TonB protein C-terminal FIM01_11305 PF01618 MotA/TolQ/ExbB proton channel family FIM01_11310 PF02472 Biopolymer transport protein ExbD/TolR FIM01_11315 PF02472 Biopolymer transport protein ExbD/TolR FIM01_11325 PF01274 Malate synthase FIM01_11330 PF03969 AFG1-like ATPase FIM01_11340 PF00743 Flavin-binding monooxygenase-like FIM01_11350 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family FIM01_11360 PF00216 Bacterial DNA-binding protein FIM01_11365 PF00575 S1 RNA binding domain FIM01_11370 PF02224 Cytidylate kinase FIM01_11380 PF14437 MafB19-like deaminase FIM01_11390 PF03167 Uracil DNA glycosylase superfamily FIM01_11400 PF03934 Type II secretion system (T2SS), protein K FIM01_11405 PF07963 Prokaryotic N-terminal methylation motif FIM01_11405 PF11612 Type II secretion system (T2SS), protein J FIM01_11410 PF07963 Prokaryotic N-terminal methylation motif FIM01_11410 PF02501 Type II secretion system (T2SS), protein I FIM01_11425 PF01026 TatD related DNase FIM01_11435 PF09115 DNA polymerase III, delta subunit, C terminal FIM01_11440 PF02348 Cytidylyltransferase FIM01_11445 PF02606 Tetraacyldisaccharide-1-P 4'-kinase FIM01_11450 PF00005 ABC transporter FIM01_11450 PF00664 ABC transporter transmembrane region FIM01_11460 PF01618 MotA/TolQ/ExbB proton channel family FIM01_11465 PF02195 ParB-like nuclease domain FIM01_11465 PF17762 HTH domain found in ParB protein FIM01_11470 PF13614 AAA domain FIM01_11475 PF02527 rRNA small subunit methyltransferase G FIM01_11480 PF00483 Nucleotidyl transferase FIM01_11485 PF01636 Phosphotransferase enzyme family FIM01_11490 PF03968 OstA-like protein FIM01_11490 PF04453 LPS transport system D FIM01_11495 PF09312 SurA N-terminal domain FIM01_11495 PF00639 PPIC-type PPIASE domain FIM01_11500 PF01116 Fructose-bisphosphate aldolase class-II FIM01_11510 PF00162 Phosphoglycerate kinase FIM01_11520 PF02545 Maf-like protein FIM01_11525 PF08007 Cupin superfamily protein FIM01_11540 PF00375 Sodium:dicarboxylate symporter family FIM01_11545 PF06912 Protein of unknown function (DUF1275) FIM01_11550 PF09831 Uncharacterized protein conserved in bacteria (DUF2058) FIM01_11555 PF00005 ABC transporter FIM01_11555 PF00664 ABC transporter transmembrane region FIM01_11565 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term FIM01_11565 PF12833 Helix-turn-helix domain FIM01_11570 PF01597 Glycine cleavage H-protein FIM01_11575 PF02146 Sir2 family FIM01_11580 PF00474 Sodium:solute symporter family FIM01_11585 PF01037 Lrp/AsnC ligand binding domain FIM01_11590 PF18327 Proline utilization A proline dehydrogenase N-terminal domain FIM01_11590 PF01619 Proline dehydrogenase FIM01_11590 PF00171 Aldehyde dehydrogenase family FIM01_11590 PF14850 DNA-binding domain of Proline dehydrogenase FIM01_11595 PF04229 GrpB protein FIM01_11600 PF05958 tRNA (Uracil-5-)-methyltransferase FIM01_11610 PF09992 Phosphodiester glycosidase FIM01_11620 PF04264 YceI-like domain FIM01_11630 PF00456 Transketolase, thiamine diphosphate binding domain FIM01_11630 PF02780 Transketolase, C-terminal domain FIM01_11630 PF02779 Transketolase, pyrimidine binding domain FIM01_11635 PF00438 S-adenosylmethionine synthetase, N-terminal domain FIM01_11635 PF02772 S-adenosylmethionine synthetase, central domain FIM01_11635 PF02773 S-adenosylmethionine synthetase, C-terminal domain FIM01_11655 PF00905 Penicillin binding protein transpeptidase domain FIM01_11670 PF02075 Crossover junction endodeoxyribonuclease RuvC FIM01_11675 PF03853 YjeF-related protein N-terminus FIM01_11675 PF01256 Carbohydrate kinase FIM01_11680 PF08331 Domain of unknown function (DUF1730) FIM01_11685 PF04055 Radical SAM superfamily FIM01_11685 PF06968 Biotin and Thiamin Synthesis associated domain FIM01_11700 PF16970 Type-1 fimbrial protein, A FIM01_11705 PF02753 Pili assembly chaperone PapD, C-terminal domain FIM01_11705 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain FIM01_11710 PF13954 PapC N-terminal domain FIM01_11710 PF13953 PapC C-terminal domain FIM01_11710 PF00577 Outer membrane usher protein FIM01_11735 PF00892 EamA-like transporter family FIM01_11745 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin FIM01_11755 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FIM01_11755 PF03466 LysR substrate binding domain FIM01_11775 PF00440 Bacterial regulatory proteins, tetR family FIM01_11785 PF01709 Transcriptional regulator FIM01_11790 PF01037 Lrp/AsnC ligand binding domain FIM01_11800 PF00005 ABC transporter FIM01_11805 PF00528 Binding-protein-dependent transport system inner membrane component FIM01_11810 PF00528 Binding-protein-dependent transport system inner membrane component FIM01_11825 PF02771 Acyl-CoA dehydrogenase, N-terminal domain FIM01_11825 PF08028 Acyl-CoA dehydrogenase, C-terminal domain FIM01_11835 PF00296 Luciferase-like monooxygenase FIM01_11840 PF03180 NLPA lipoprotein FIM01_11845 PF03180 NLPA lipoprotein FIM01_11850 PF00005 ABC transporter FIM01_11850 PF09383 NIL domain FIM01_11855 PF00528 Binding-protein-dependent transport system inner membrane component FIM01_11860 PF06071 Protein of unknown function (DUF933) FIM01_11860 PF01926 50S ribosome-binding GTPase FIM01_11885 PF03591 AzlC protein FIM01_11890 PF05437 Branched-chain amino acid transport protein (AzlD) FIM01_11900 PF02222 ATP-grasp domain FIM01_11905 PF08335 GlnD PII-uridylyltransferase FIM01_11905 PF01966 HD domain FIM01_11905 PF01909 Nucleotidyltransferase domain FIM01_11910 PF00155 Aminotransferase class I and II FIM01_11920 PF12852 Cupin FIM01_11920 PF12833 Helix-turn-helix domain FIM01_11925 PF00255 Glutathione peroxidase FIM01_11930 PF01641 SelR domain FIM01_11935 PF00155 Aminotransferase class I and II FIM01_11940 PF00375 Sodium:dicarboxylate symporter family FIM01_11945 PF00710 Asparaginase, N-terminal FIM01_11945 PF17763 Glutaminase/Asparaginase C-terminal domain FIM01_11950 PF17657 Bacterial DNA polymerase III alpha subunit finger domain FIM01_11950 PF14579 Helix-hairpin-helix motif FIM01_11950 PF02811 PHP domain FIM01_11950 PF07733 Bacterial DNA polymerase III alpha NTPase domain FIM01_11950 PF01336 OB-fold nucleic acid binding domain FIM01_11955 PF00588 SpoU rRNA Methylase family FIM01_11960 PF00132 Bacterial transferase hexapeptide (six repeats) FIM01_11975 PF13192 Thioredoxin domain FIM01_11975 PF07992 Pyridine nucleotide-disulphide oxidoreductase FIM01_11990 PF03466 LysR substrate binding domain FIM01_11990 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FIM01_11995 PF01758 Sodium Bile acid symporter family FIM01_12000 PF01022 Bacterial regulatory protein, arsR family FIM01_12005 PF03960 ArsC family FIM01_12015 PF13382 Adenine deaminase C-terminal domain FIM01_12015 PF01979 Amidohydrolase family FIM01_12025 PF03466 LysR substrate binding domain FIM01_12025 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FIM01_12035 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin FIM01_12040 PF01177 Asp/Glu/Hydantoin racemase FIM01_12045 PF02668 Taurine catabolism dioxygenase TauD, TfdA family FIM01_12050 PF00528 Binding-protein-dependent transport system inner membrane component FIM01_12055 PF00005 ABC transporter FIM01_12060 PF04069 Substrate binding domain of ABC-type glycine betaine transport system FIM01_12070 PF00083 Sugar (and other) transporter FIM01_12075 PF00296 Luciferase-like monooxygenase FIM01_12095 PF01654 Cytochrome bd terminal oxidase subunit I FIM01_12100 PF02322 Cytochrome bd terminal oxidase subunit II FIM01_12110 PF00392 Bacterial regulatory proteins, gntR family FIM01_12110 PF00155 Aminotransferase class I and II FIM01_12115 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FIM01_12115 PF03466 LysR substrate binding domain FIM01_12130 PF00698 Acyl transferase domain FIM01_12135 PF10620 Phosphoribosyl-dephospho-CoA transferase MdcG FIM01_12145 PF01039 Carboxyl transferase domain FIM01_12150 PF06857 Malonate decarboxylase delta subunit (MdcD) FIM01_12155 PF01874 ATP:dephospho-CoA triphosphoribosyl transferase FIM01_12160 PF16957 Malonate decarboxylase, alpha subunit, transporter FIM01_12165 PF07690 Major Facilitator Superfamily FIM01_12180 PF00392 Bacterial regulatory proteins, gntR family FIM01_12185 PF04172 LrgB-like family FIM01_12190 PF03788 LrgA family FIM01_12195 PF03466 LysR substrate binding domain FIM01_12195 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FIM01_12200 PF14834 Glutathione S-transferase, C-terminal domain FIM01_12200 PF02798 Glutathione S-transferase, N-terminal domain FIM01_12205 PF02798 Glutathione S-transferase, N-terminal domain FIM01_12210 PF03466 LysR substrate binding domain FIM01_12210 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FIM01_12220 PF00581 Rhodanese-like domain FIM01_12225 PF00132 Bacterial transferase hexapeptide (six repeats) FIM01_12235 PF00266 Aminotransferase class-V FIM01_12240 PF01810 LysE type translocator FIM01_12245 PF03466 LysR substrate binding domain FIM01_12245 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FIM01_12250 PF00497 Bacterial extracellular solute-binding proteins, family 3 FIM01_12255 PF00497 Bacterial extracellular solute-binding proteins, family 3 FIM01_12260 PF00005 ABC transporter FIM01_12265 PF00528 Binding-protein-dependent transport system inner membrane component FIM01_12270 PF00528 Binding-protein-dependent transport system inner membrane component FIM01_12285 PF00072 Response regulator receiver domain FIM01_12290 PF00512 His Kinase A (phospho-acceptor) domain FIM01_12290 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FIM01_12290 PF09308 LuxQ, periplasmic FIM01_12290 PF00072 Response regulator receiver domain FIM01_12300 PF13404 AsnC-type helix-turn-helix domain FIM01_12300 PF01037 Lrp/AsnC ligand binding domain FIM01_12310 PF00717 Peptidase S24-like FIM01_12335 PF00199 Catalase FIM01_12335 PF18011 C-terminal domain found in long catalases FIM01_12335 PF06628 Catalase-related immune-responsive FIM01_12345 PF00994 Probable molybdopterin binding domain FIM01_12345 PF18146 Damage-inducible protein CinA KH domain FIM01_12345 PF02464 Competence-damaged protein FIM01_12375 PF03466 LysR substrate binding domain FIM01_12375 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FIM01_12395 PF00501 AMP-binding enzyme FIM01_12395 PF13193 AMP-binding enzyme C-terminal domain FIM01_12400 PF00440 Bacterial regulatory proteins, tetR family FIM01_12405 PF02771 Acyl-CoA dehydrogenase, N-terminal domain FIM01_12405 PF00441 Acyl-CoA dehydrogenase, C-terminal domain FIM01_12405 PF02770 Acyl-CoA dehydrogenase, middle domain FIM01_12410 PF01039 Carboxyl transferase domain FIM01_12415 PF00378 Enoyl-CoA hydratase/isomerase FIM01_12420 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain FIM01_12420 PF02785 Biotin carboxylase C-terminal domain FIM01_12420 PF00289 Biotin carboxylase, N-terminal domain FIM01_12420 PF00364 Biotin-requiring enzyme FIM01_12425 PF00682 HMGL-like FIM01_12430 PF03466 LysR substrate binding domain FIM01_12430 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FIM01_12445 PF02770 Acyl-CoA dehydrogenase, middle domain FIM01_12445 PF12806 Acetyl-CoA dehydrogenase C-terminal like FIM01_12445 PF00441 Acyl-CoA dehydrogenase, C-terminal domain FIM01_12445 PF02771 Acyl-CoA dehydrogenase, N-terminal domain FIM01_12455 PF07690 Major Facilitator Superfamily FIM01_12465 PF01144 Coenzyme A transferase FIM01_12470 PF01144 Coenzyme A transferase FIM01_12475 PF07690 Major Facilitator Superfamily FIM01_12480 PF02770 Acyl-CoA dehydrogenase, middle domain FIM01_12480 PF00441 Acyl-CoA dehydrogenase, C-terminal domain FIM01_12480 PF02771 Acyl-CoA dehydrogenase, N-terminal domain FIM01_12485 PF00378 Enoyl-CoA hydratase/isomerase FIM01_12495 PF18321 3-hydroxybutyryl-CoA dehydrogenase reduced Rossmann-fold domain FIM01_12495 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain FIM01_12495 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain FIM01_12500 PF00108 Thiolase, N-terminal domain FIM01_12500 PF02803 Thiolase, C-terminal domain FIM01_12505 PF09339 IclR helix-turn-helix domain FIM01_12510 PF07690 Major Facilitator Superfamily FIM01_12515 PF03060 Nitronate monooxygenase FIM01_12520 PF00378 Enoyl-CoA hydratase/isomerase FIM01_12525 PF09339 IclR helix-turn-helix domain FIM01_12530 PF02515 CoA-transferase family III FIM01_12535 PF02770 Acyl-CoA dehydrogenase, middle domain FIM01_12535 PF00441 Acyl-CoA dehydrogenase, C-terminal domain FIM01_12535 PF02771 Acyl-CoA dehydrogenase, N-terminal domain FIM01_12540 PF07690 Major Facilitator Superfamily FIM01_12545 PF13419 Haloacid dehalogenase-like hydrolase FIM01_12550 PF00266 Aminotransferase class-V FIM01_12555 PF01266 FAD dependent oxidoreductase FIM01_12560 PF00528 Binding-protein-dependent transport system inner membrane component FIM01_12565 PF00005 ABC transporter FIM01_12565 PF08402 TOBE domain FIM01_12575 PF07702 UTRA domain FIM01_12575 PF00392 Bacterial regulatory proteins, gntR family FIM01_12580 PF01494 FAD binding domain FIM01_12585 PF01614 Bacterial transcriptional regulator FIM01_12585 PF09339 IclR helix-turn-helix domain FIM01_12590 PF02525 Flavodoxin-like fold FIM01_12595 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FIM01_12595 PF03466 LysR substrate binding domain FIM01_12600 PF02627 Carboxymuconolactone decarboxylase family FIM01_12605 PF00171 Aldehyde dehydrogenase family FIM01_12615 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin FIM01_12625 PF00171 Aldehyde dehydrogenase family FIM01_12630 PF00296 Luciferase-like monooxygenase FIM01_12635 PF01613 Flavin reductase like domain FIM01_12640 PF12697 Alpha/beta hydrolase family FIM01_12660 PF01292 Prokaryotic cytochrome b561 FIM01_12665 PF00199 Catalase FIM01_12670 PF07690 Major Facilitator Superfamily FIM01_12675 PF00682 HMGL-like FIM01_12680 PF02515 CoA-transferase family III FIM01_12710 PF00313 'Cold-shock' DNA-binding domain FIM01_12750 PF00580 UvrD/REP helicase N-terminal domain FIM01_12750 PF13361 UvrD-like helicase C-terminal domain FIM01_12755 PF02463 RecF/RecN/SMC N terminal domain FIM01_12760 PF03061 Thioesterase superfamily FIM01_12765 PF00132 Bacterial transferase hexapeptide (six repeats) FIM01_12770 PF07848 PaaX-like protein FIM01_12770 PF08223 PaaX-like protein C-terminal domain FIM01_12775 PF14535 AMP-binding enzyme C-terminal domain FIM01_12775 PF00501 AMP-binding enzyme FIM01_12780 PF00108 Thiolase, N-terminal domain FIM01_12780 PF02803 Thiolase, C-terminal domain FIM01_12785 PF18321 3-hydroxybutyryl-CoA dehydrogenase reduced Rossmann-fold domain FIM01_12785 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain FIM01_12785 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain FIM01_12790 PF00378 Enoyl-CoA hydratase/isomerase FIM01_12795 PF00378 Enoyl-CoA hydratase/isomerase FIM01_12800 PF00970 Oxidoreductase FAD-binding domain FIM01_12800 PF00111 2Fe-2S iron-sulfur cluster binding domain FIM01_12800 PF00175 Oxidoreductase NAD-binding domain FIM01_12805 PF01883 Iron-sulfur cluster assembly protein FIM01_12810 PF05138 Phenylacetic acid catabolic protein FIM01_12815 PF06243 Phenylacetic acid degradation B FIM01_12820 PF05138 Phenylacetic acid catabolic protein FIM01_12825 PF00171 Aldehyde dehydrogenase family FIM01_12825 PF01575 MaoC like domain FIM01_12830 PF03315 Serine dehydratase beta chain FIM01_12830 PF03313 Serine dehydratase alpha chain FIM01_12835 PF13520 Amino acid permease FIM01_12840 PF00171 Aldehyde dehydrogenase family FIM01_12845 PF00083 Sugar (and other) transporter FIM01_12855 PF04324 BFD-like [2Fe-2S] binding domain FIM01_12855 PF07992 Pyridine nucleotide-disulphide oxidoreductase FIM01_12865 PF01266 FAD dependent oxidoreductase FIM01_12870 PF05544 Proline racemase FIM01_12875 PF00392 Bacterial regulatory proteins, gntR family FIM01_12885 PF00701 Dihydrodipicolinate synthetase family FIM01_12900 PF00376 MerR family regulatory protein FIM01_12900 PF09278 MerR, DNA binding FIM01_12910 PF02677 Epoxyqueuosine reductase QueH FIM01_12925 PF07690 Major Facilitator Superfamily FIM01_12930 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region FIM01_12940 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FIM01_12940 PF03466 LysR substrate binding domain FIM01_12970 PF17871 AAA lid domain FIM01_12970 PF07724 AAA domain (Cdc48 subfamily) FIM01_12970 PF10431 C-terminal, D2-small domain, of ClpB protein FIM01_12970 PF00004 ATPase family associated with various cellular activities (AAA) FIM01_12980 PF00691 OmpA family FIM01_12980 PF01389 OmpA-like transmembrane domain FIM01_13050 PF00005 ABC transporter FIM01_13055 PF00497 Bacterial extracellular solute-binding proteins, family 3 FIM01_13060 PF01425 Amidase FIM01_13065 PF08753 NikR C terminal nickel binding domain FIM01_13065 PF01402 Ribbon-helix-helix protein, copG family FIM01_13075 PF01638 HxlR-like helix-turn-helix FIM01_13080 PF02525 Flavodoxin-like fold FIM01_13085 PF02785 Biotin carboxylase C-terminal domain FIM01_13085 PF00289 Biotin carboxylase, N-terminal domain FIM01_13085 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain FIM01_13100 PF13823 Alcohol dehydrogenase GroES-associated FIM01_13100 PF08240 Alcohol dehydrogenase GroES-like domain FIM01_13100 PF00107 Zinc-binding dehydrogenase FIM01_13110 PF00440 Bacterial regulatory proteins, tetR family FIM01_13140 PF00654 Voltage gated chloride channel FIM01_13145 PF00364 Biotin-requiring enzyme FIM01_13145 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain FIM01_13145 PF02785 Biotin carboxylase C-terminal domain FIM01_13145 PF00289 Biotin carboxylase, N-terminal domain FIM01_13155 PF07286 Protein of unknown function (DUF1445) FIM01_13160 PF03746 LamB/YcsF family FIM01_13165 PF01566 Natural resistance-associated macrophage protein FIM01_13170 PF03466 LysR substrate binding domain FIM01_13170 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FIM01_13190 PF03527 RHS protein FIM01_13190 PF05593 RHS Repeat FIM01_13205 PF03527 RHS protein FIM01_13205 PF05593 RHS Repeat FIM01_13205 PF14220 Domain of unknown function (DUF4329) FIM01_13210 PF16671 Actin cross-linking domain FIM01_13210 PF04717 Type VI secretion system, phage-baseplate injector FIM01_13240 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain FIM01_13240 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain FIM01_13260 PF07690 Major Facilitator Superfamily FIM01_13275 PF03279 Bacterial lipid A biosynthesis acyltransferase FIM01_13285 PF00892 EamA-like transporter family FIM01_13290 PF01037 Lrp/AsnC ligand binding domain FIM01_13295 PF05192 MutS domain III FIM01_13295 PF05188 MutS domain II FIM01_13295 PF00488 MutS domain V FIM01_13295 PF01624 MutS domain I FIM01_13295 PF05190 MutS family domain IV FIM01_13305 PF11953 Domain of unknown function (DUF3470) FIM01_13305 PF00037 4Fe-4S binding domain FIM01_13315 PF01596 O-methyltransferase FIM01_13325 PF00132 Bacterial transferase hexapeptide (six repeats) FIM01_13330 PF01205 Uncharacterized protein family UPF0029 FIM01_13340 PF00664 ABC transporter transmembrane region FIM01_13340 PF00005 ABC transporter FIM01_13340 PF03412 Peptidase C39 family FIM01_13350 PF00005 ABC transporter FIM01_13350 PF12399 Branched-chain amino acid ATP-binding cassette transporter FIM01_13355 PF03968 OstA-like protein FIM01_13370 PF00571 CBS domain FIM01_13370 PF01380 SIS domain FIM01_13375 PF01406 tRNA synthetases class I (C) catalytic domain FIM01_13375 PF09190 DALR domain FIM01_13425 PF13229 Right handed beta helix region FIM01_13425 PF12708 Pectate lyase superfamily protein FIM01_13450 PF13737 Transposase DDE domain FIM01_13535 PF01638 HxlR-like helix-turn-helix FIM01_13540 PF07690 Major Facilitator Superfamily FIM01_13570 PF03807 NADP oxidoreductase coenzyme F420-dependent FIM01_13570 PF14748 Pyrroline-5-carboxylate reductase dimerisation FIM01_13580 PF00313 'Cold-shock' DNA-binding domain FIM01_13585 PF01810 LysE type translocator FIM01_13620 PF02601 Exonuclease VII, large subunit FIM01_13620 PF13742 OB-fold nucleic acid binding domain FIM01_13660 PF09278 MerR, DNA binding FIM01_13660 PF00376 MerR family regulatory protein FIM01_13665 PF00403 Heavy-metal-associated domain FIM01_13675 PF03466 LysR substrate binding domain FIM01_13675 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FIM01_13680 PF00848 Ring hydroxylating alpha subunit (catalytic domain) FIM01_13680 PF00355 Rieske [2Fe-2S] domain FIM01_13685 PF00866 Ring hydroxylating beta subunit FIM01_13690 PF00175 Oxidoreductase NAD-binding domain FIM01_13690 PF00111 2Fe-2S iron-sulfur cluster binding domain FIM01_13690 PF00970 Oxidoreductase FAD-binding domain FIM01_13695 PF00106 short chain dehydrogenase FIM01_13700 PF03594 Benzoate membrane transport protein FIM01_13705 PF07690 Major Facilitator Superfamily FIM01_13715 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III FIM01_13715 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal FIM01_13720 PF04408 Helicase associated domain (HA2) FIM01_13720 PF00271 Helicase conserved C-terminal domain FIM01_13720 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold FIM01_13720 PF00270 DEAD/DEAH box helicase FIM01_13720 PF11898 Domain of unknown function (DUF3418) FIM01_13725 PF00578 AhpC/TSA family FIM01_13725 PF10417 C-terminal domain of 1-Cys peroxiredoxin FIM01_13745 PF07992 Pyridine nucleotide-disulphide oxidoreductase FIM01_13745 PF13192 Thioredoxin domain FIM01_13755 PF02798 Glutathione S-transferase, N-terminal domain FIM01_13755 PF00043 Glutathione S-transferase, C-terminal domain FIM01_13765 PF02390 Putative methyltransferase FIM01_13770 PF00043 Glutathione S-transferase, C-terminal domain FIM01_13770 PF13417 Glutathione S-transferase, N-terminal domain FIM01_13780 PF00691 OmpA family FIM01_13780 PF13488 Glycine zipper FIM01_13785 PF01979 Amidohydrolase family FIM01_13790 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain FIM01_13790 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain FIM01_13800 PF10672 S-adenosylmethionine-dependent methyltransferase FIM01_13800 PF01170 Putative RNA methylase family UPF0020 FIM01_13800 PF02926 THUMP domain FIM01_13815 PF00004 ATPase family associated with various cellular activities (AAA) FIM01_13815 PF17871 AAA lid domain FIM01_13815 PF02861 Clp amino terminal domain, pathogenicity island component FIM01_13815 PF10431 C-terminal, D2-small domain, of ClpB protein FIM01_13815 PF07724 AAA domain (Cdc48 subfamily) FIM01_13830 PF02566 OsmC-like protein FIM01_13835 PF00027 Cyclic nucleotide-binding domain FIM01_13835 PF13545 Crp-like helix-turn-helix domain FIM01_13840 PF00248 Aldo/keto reductase family FIM01_13855 PF00709 Adenylosuccinate synthetase FIM01_13860 PF13393 Histidyl-tRNA synthetase FIM01_13865 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain FIM01_13865 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain FIM01_13870 PF02272 DHHA1 domain FIM01_13870 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain FIM01_13870 PF01411 tRNA synthetases class II (A) FIM01_13875 PF13840 ACT domain FIM01_13875 PF00696 Amino acid kinase family FIM01_13875 PF01842 ACT domain FIM01_13880 PF02599 Global regulator protein family FIM01_13885 PF01351 Ribonuclease HII FIM01_13895 PF01292 Prokaryotic cytochrome b561 FIM01_13900 PF00962 Adenosine/AMP deaminase FIM01_13905 PF00860 Permease family FIM01_13915 PF00743 Flavin-binding monooxygenase-like FIM01_13920 PF00106 short chain dehydrogenase FIM01_13930 PF17954 Quercetinase C-terminal cupin domain FIM01_13930 PF02678 Pirin FIM01_13935 PF00440 Bacterial regulatory proteins, tetR family FIM01_13935 PF17932 Tetracyclin repressor-like, C-terminal domain FIM01_13945 PF00106 short chain dehydrogenase FIM01_13950 PF00743 Flavin-binding monooxygenase-like FIM01_13955 PF04072 Leucine carboxyl methyltransferase FIM01_13960 PF12833 Helix-turn-helix domain FIM01_13960 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term FIM01_13965 PF00743 Flavin-binding monooxygenase-like FIM01_13970 PF00106 short chain dehydrogenase FIM01_13975 PF07859 alpha/beta hydrolase fold FIM01_13980 PF05199 GMC oxidoreductase FIM01_13985 PF03573 outer membrane porin, OprD family FIM01_13990 PF07690 Major Facilitator Superfamily FIM01_13995 PF00355 Rieske [2Fe-2S] domain FIM01_14000 PF00111 2Fe-2S iron-sulfur cluster binding domain FIM01_14000 PF00175 Oxidoreductase NAD-binding domain FIM01_14015 PF07690 Major Facilitator Superfamily FIM01_14020 PF00378 Enoyl-CoA hydratase/isomerase FIM01_14025 PF00171 Aldehyde dehydrogenase family FIM01_14035 PF02770 Acyl-CoA dehydrogenase, middle domain FIM01_14035 PF02771 Acyl-CoA dehydrogenase, N-terminal domain FIM01_14035 PF00441 Acyl-CoA dehydrogenase, C-terminal domain FIM01_14040 PF03573 outer membrane porin, OprD family FIM01_14055 PF07519 Tannase and feruloyl esterase FIM01_14060 PF07729 FCD domain FIM01_14060 PF00392 Bacterial regulatory proteins, gntR family FIM01_14065 PF00171 Aldehyde dehydrogenase family FIM01_14070 PF00701 Dihydrodipicolinate synthetase family FIM01_14075 PF13378 Enolase C-terminal domain-like FIM01_14080 PF07690 Major Facilitator Superfamily FIM01_14085 PF08666 SAF domain FIM01_14085 PF04295 D-galactarate dehydratase / Altronate hydrolase, C terminus FIM01_14090 PF00892 EamA-like transporter family FIM01_14095 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term FIM01_14095 PF12833 Helix-turn-helix domain FIM01_14100 PF00171 Aldehyde dehydrogenase family FIM01_14120 PF00324 Amino acid permease FIM01_14125 PF04958 Arginine N-succinyltransferase beta subunit FIM01_14130 PF00202 Aminotransferase class-III FIM01_14140 PF00171 Aldehyde dehydrogenase family FIM01_14150 PF00392 Bacterial regulatory proteins, gntR family FIM01_14150 PF07729 FCD domain FIM01_14160 PF00324 Amino acid permease FIM01_14165 PF01266 FAD dependent oxidoreductase FIM01_14170 PF00324 Amino acid permease FIM01_14210 PF05593 RHS Repeat FIM01_14210 PF03527 RHS protein FIM01_14220 PF13737 Transposase DDE domain FIM01_14245 PF03180 NLPA lipoprotein FIM01_14255 PF00724 NADH:flavin oxidoreductase / NADH oxidase family FIM01_14255 PF07992 Pyridine nucleotide-disulphide oxidoreductase FIM01_14260 PF00764 Arginosuccinate synthase FIM01_14265 PF00563 EAL domain FIM01_14265 PF00360 Phytochrome region FIM01_14265 PF00990 Diguanylate cyclase, GGDEF domain FIM01_14265 PF01590 GAF domain FIM01_14270 PF01979 Amidohydrolase family FIM01_14275 PF00929 Exonuclease FIM01_14285 PF07715 TonB-dependent Receptor Plug Domain FIM01_14285 PF00593 TonB dependent receptor FIM01_14325 PF07992 Pyridine nucleotide-disulphide oxidoreductase FIM01_14325 PF00724 NADH:flavin oxidoreductase / NADH oxidase family FIM01_14330 PF00005 ABC transporter FIM01_14330 PF08352 Oligopeptide/dipeptide transporter, C-terminal region FIM01_14335 PF12911 N-terminal TM domain of oligopeptide transport permease C FIM01_14335 PF00528 Binding-protein-dependent transport system inner membrane component FIM01_14340 PF00528 Binding-protein-dependent transport system inner membrane component FIM01_14345 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle FIM01_14350 PF01476 LysM domain FIM01_14350 PF01464 Transglycosylase SLT domain FIM01_14350 PF01476 LysM domain FIM01_14350 PF01464 Transglycosylase SLT domain FIM01_14355 PF00929 Exonuclease FIM01_14365 PF00293 NUDIX domain FIM01_14365 PF09297 NADH pyrophosphatase zinc ribbon domain FIM01_14375 PF04972 BON domain FIM01_14380 PF02021 Uncharacterised protein family UPF0102 FIM01_14385 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases FIM01_14395 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FIM01_14395 PF03466 LysR substrate binding domain FIM01_14400 PF01810 LysE type translocator FIM01_14410 PF13411 MerR HTH family regulatory protein FIM01_14420 PF01494 FAD binding domain FIM01_14425 PF01494 FAD binding domain FIM01_14430 PF05195 Aminopeptidase P, N-terminal domain FIM01_14430 PF00557 Metallopeptidase family M24 FIM01_14470 PF01812 5-formyltetrahydrofolate cyclo-ligase family FIM01_14480 PF00004 ATPase family associated with various cellular activities (AAA) FIM01_14480 PF05362 Lon protease (S16) C-terminal proteolytic domain FIM01_14480 PF02190 ATP-dependent protease La (LON) substrate-binding domain FIM01_14485 PF02590 Predicted SPOUT methyltransferase FIM01_14490 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase FIM01_14500 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain FIM01_14500 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase FIM01_14505 PF04060 Putative Fe-S cluster FIM01_14510 PF00730 HhH-GPD superfamily base excision DNA repair protein FIM01_14510 PF10576 Iron-sulfur binding domain of endonuclease III FIM01_14510 PF00633 Helix-hairpin-helix motif FIM01_14520 PF05191 Adenylate kinase, active site lid FIM01_14535 PF03717 Penicillin-binding Protein dimerisation domain FIM01_14535 PF00905 Penicillin binding protein transpeptidase domain FIM01_14550 PF02492 CobW/HypB/UreG, nucleotide-binding domain FIM01_14555 PF01730 UreF FIM01_14560 PF02814 UreE urease accessory protein, N-terminal domain FIM01_14560 PF05194 UreE urease accessory protein, C-terminal domain FIM01_14565 PF01979 Amidohydrolase family FIM01_14565 PF00449 Urease alpha-subunit, N-terminal domain FIM01_14570 PF00699 Urease beta subunit FIM01_14575 PF00547 Urease, gamma subunit FIM01_14580 PF01774 UreD urease accessory protein FIM01_14595 PF00463 Isocitrate lyase family FIM01_14600 PF03466 LysR substrate binding domain FIM01_14600 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FIM01_14605 PF01595 Cyclin M transmembrane N-terminal domain FIM01_14605 PF00571 CBS domain FIM01_14605 PF03471 Transporter associated domain FIM01_14615 PF03600 Citrate transporter FIM01_14630 PF00009 Elongation factor Tu GTP binding domain FIM01_14635 PF01507 Phosphoadenosine phosphosulfate reductase family FIM01_14645 PF14052 Capsule assembly protein Wzi FIM01_14650 PF01336 OB-fold nucleic acid binding domain FIM01_14650 PF00152 tRNA synthetases class II (D, K and N) FIM01_14665 PF00301 Rubredoxin FIM01_14670 PF18113 Rubredoxin binding C-terminal domain FIM01_14670 PF07992 Pyridine nucleotide-disulphide oxidoreductase FIM01_14675 PF00561 alpha/beta hydrolase fold FIM01_14680 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FIM01_14680 PF03466 LysR substrate binding domain FIM01_14695 PF13089 Polyphosphate kinase N-terminal domain FIM01_14695 PF02503 Polyphosphate kinase middle domain FIM01_14695 PF13090 Polyphosphate kinase C-terminal domain 2 FIM01_14695 PF17941 Polyphosphate kinase C-terminal domain 1 FIM01_14700 PF00912 Transglycosylase FIM01_14705 PF01694 Rhomboid family FIM01_14715 PF00005 ABC transporter FIM01_14720 PF13472 GDSL-like Lipase/Acylhydrolase family FIM01_14725 PF00484 Carbonic anhydrase FIM01_14730 PF00561 alpha/beta hydrolase fold FIM01_14740 PF07715 TonB-dependent Receptor Plug Domain FIM01_14740 PF00593 TonB dependent receptor FIM01_14745 PF01521 Iron-sulphur cluster biosynthesis FIM01_14745 PF01106 NifU-like domain FIM01_14755 PF00884 Sulfatase FIM01_14760 PF03781 Sulfatase-modifying factor enzyme 1 FIM01_14775 PF00291 Pyridoxal-phosphate dependent enzyme FIM01_14780 PF01384 Phosphate transporter family FIM01_14785 PF02574 Homocysteine S-methyltransferase FIM01_14785 PF02965 Vitamin B12 dependent methionine synthase, activation domain FIM01_14785 PF00809 Pterin binding enzyme FIM01_14785 PF02310 B12 binding domain FIM01_14785 PF02607 B12 binding domain FIM01_14790 PF02780 Transketolase, C-terminal domain FIM01_14790 PF02779 Transketolase, pyrimidine binding domain FIM01_14795 PF00456 Transketolase, thiamine diphosphate binding domain FIM01_14800 PF07690 Major Facilitator Superfamily FIM01_14810 PF03466 LysR substrate binding domain FIM01_14810 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FIM01_14825 PF01263 Aldose 1-epimerase FIM01_14830 PF07690 Major Facilitator Superfamily FIM01_14835 PF02311 AraC-like ligand binding domain FIM01_14835 PF12833 Helix-turn-helix domain FIM01_14840 PF04960 Glutaminase FIM01_14845 PF01327 Polypeptide deformylase FIM01_14850 PF07690 Major Facilitator Superfamily FIM01_14860 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain FIM01_14860 PF00205 Thiamine pyrophosphate enzyme, central domain FIM01_14860 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain FIM01_14865 PF00171 Aldehyde dehydrogenase family FIM01_14870 PF01958 Domain of unknown function DUF108 FIM01_14870 PF03447 Homoserine dehydrogenase, NAD binding domain FIM01_14880 PF12697 Alpha/beta hydrolase family FIM01_14890 PF07690 Major Facilitator Superfamily FIM01_14895 PF14759 Reductase C-terminal FIM01_14895 PF07992 Pyridine nucleotide-disulphide oxidoreductase FIM01_14900 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily FIM01_14910 PF00355 Rieske [2Fe-2S] domain FIM01_14920 PF00355 Rieske [2Fe-2S] domain FIM01_14925 PF01614 Bacterial transcriptional regulator FIM01_14925 PF09339 IclR helix-turn-helix domain FIM01_14940 PF00378 Enoyl-CoA hydratase/isomerase FIM01_14950 PF00535 Glycosyl transferase family 2 FIM01_14955 PF14883 Hypothetical glycosyl hydrolase family 13 FIM01_14955 PF01522 Polysaccharide deacetylase FIM01_14960 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase FIM01_14965 PF07152 YaeQ protein FIM01_14970 PF00375 Sodium:dicarboxylate symporter family FIM01_14975 PF07683 Cobalamin synthesis protein cobW C-terminal domain FIM01_14975 PF02492 CobW/HypB/UreG, nucleotide-binding domain FIM01_14985 PF03061 Thioesterase superfamily FIM01_14995 PF02028 BCCT, betaine/carnitine/choline family transporter FIM01_15000 PF02028 BCCT, betaine/carnitine/choline family transporter FIM01_15005 PF00440 Bacterial regulatory proteins, tetR family FIM01_15005 PF13977 BetI-type transcriptional repressor, C-terminal FIM01_15010 PF00171 Aldehyde dehydrogenase family FIM01_15015 PF05199 GMC oxidoreductase FIM01_15015 PF00732 GMC oxidoreductase FIM01_15020 PF06039 Malate:quinone oxidoreductase (Mqo) FIM01_15030 PF02574 Homocysteine S-methyltransferase FIM01_15035 PF13520 Amino acid permease FIM01_15060 PF01126 Heme oxygenase FIM01_15080 PF00593 TonB dependent receptor FIM01_15080 PF07715 TonB-dependent Receptor Plug Domain FIM01_15090 PF04542 Sigma-70 region 2 FIM01_15090 PF08281 Sigma-70, region 4 FIM01_15100 PF00701 Dihydrodipicolinate synthetase family FIM01_15105 PF00083 Sugar (and other) transporter FIM01_15125 PF01026 TatD related DNase FIM01_15140 PF07693 KAP family P-loop domain FIM01_15215 PF13356 Arm DNA-binding domain FIM01_15215 PF00589 Phage integrase family FIM01_15230 PF00717 Peptidase S24-like FIM01_15235 PF11799 impB/mucB/samB family C-terminal domain FIM01_15235 PF11798 IMS family HHH motif FIM01_15235 PF13438 Domain of unknown function (DUF4113) FIM01_15235 PF00817 impB/mucB/samB family FIM01_15305 PF00712 DNA polymerase III beta subunit, N-terminal domain FIM01_15305 PF02767 DNA polymerase III beta subunit, central domain FIM01_15305 PF02768 DNA polymerase III beta subunit, C-terminal domain FIM01_15475 PF07007 Lysozyme inhibitor LprI FIM01_15520 PF01695 IstB-like ATP binding protein FIM01_15530 PF00145 C-5 cytosine-specific DNA methylase FIM01_15575 PF01381 Helix-turn-helix FIM01_15575 PF00717 Peptidase S24-like FIM01_15610 PF00929 Exonuclease FIM01_15680 PF07690 Major Facilitator Superfamily FIM01_15685 PF13533 Biotin-lipoyl like FIM01_15690 PF03061 Thioesterase superfamily FIM01_15695 PF00490 Delta-aminolevulinic acid dehydratase FIM01_15700 PF01266 FAD dependent oxidoreductase FIM01_15705 PF08338 Domain of unknown function (DUF1731) FIM01_15705 PF01370 NAD dependent epimerase/dehydratase family FIM01_15725 PF12320 Type 5 capsule protein repressor C-terminal domain FIM01_15725 PF00149 Calcineurin-like phosphoesterase FIM01_15735 PF01168 Alanine racemase, N-terminal domain FIM01_15740 PF00437 Type II/IV secretion system protein FIM01_15745 PF00437 Type II/IV secretion system protein FIM01_15750 PF01475 Ferric uptake regulator family FIM01_15755 PF04355 SmpA / OmlA family FIM01_15760 PF03658 RnfH family Ubiquitin FIM01_15775 PF01814 Hemerythrin HHE cation binding domain FIM01_15780 PF13230 Glutamine amidotransferases class-II FIM01_15790 PF00696 Amino acid kinase family FIM01_15795 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III FIM01_15795 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain FIM01_15795 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II FIM01_15795 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I FIM01_15800 PF00692 dUTPase FIM01_15805 PF13361 UvrD-like helicase C-terminal domain FIM01_15805 PF00580 UvrD/REP helicase N-terminal domain FIM01_15810 PF00691 OmpA family FIM01_15810 PF13488 Glycine zipper FIM01_15815 PF01553 Acyltransferase FIM01_15825 PF03775 Septum formation inhibitor MinC, C-terminal domain FIM01_15830 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain FIM01_15835 PF03776 Septum formation topological specificity factor MinE FIM01_15845 PF01810 LysE type translocator FIM01_15850 PF09397 Ftsk gamma domain FIM01_15850 PF17854 FtsK alpha domain FIM01_15850 PF13491 4TM region of DNA translocase FtsK/SpoIIIE FIM01_15850 PF01580 FtsK/SpoIIIE family FIM01_15855 PF07992 Pyridine nucleotide-disulphide oxidoreductase FIM01_15860 PF03588 Leucyl/phenylalanyl-tRNA protein transferase FIM01_15880 PF00583 Acetyltransferase (GNAT) family FIM01_15895 PF03144 Elongation factor Tu domain 2 FIM01_15895 PF03143 Elongation factor Tu C-terminal domain FIM01_15895 PF00009 Elongation factor Tu GTP binding domain FIM01_15900 PF00679 Elongation factor G C-terminus FIM01_15900 PF03764 Elongation factor G, domain IV FIM01_15900 PF14492 Elongation Factor G, domain II FIM01_15900 PF03144 Elongation factor Tu domain 2 FIM01_15900 PF00009 Elongation factor Tu GTP binding domain FIM01_15905 PF00177 Ribosomal protein S7p/S5e FIM01_15910 PF00164 Ribosomal protein S12/S23 FIM01_15920 PF00109 Beta-ketoacyl synthase, N-terminal domain FIM01_15920 PF02801 Beta-ketoacyl synthase, C-terminal domain FIM01_15930 PF05726 Pirin C-terminal cupin domain FIM01_15930 PF02678 Pirin FIM01_15940 PF02540 NAD synthase FIM01_15940 PF00795 Carbon-nitrogen hydrolase FIM01_15955 PF00970 Oxidoreductase FAD-binding domain FIM01_15955 PF00111 2Fe-2S iron-sulfur cluster binding domain FIM01_15955 PF00175 Oxidoreductase NAD-binding domain FIM01_15960 PF00171 Aldehyde dehydrogenase family FIM01_15965 PF00848 Ring hydroxylating alpha subunit (catalytic domain) FIM01_15965 PF00355 Rieske [2Fe-2S] domain FIM01_15970 PF07859 alpha/beta hydrolase fold FIM01_15975 PF02028 BCCT, betaine/carnitine/choline family transporter FIM01_15980 PF00180 Isocitrate/isopropylmalate dehydrogenase FIM01_15985 PF03466 LysR substrate binding domain FIM01_15985 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FIM01_16005 PF00037 4Fe-4S binding domain FIM01_16010 PF01467 Cytidylyltransferase-like FIM01_16015 PF01668 SmpB protein FIM01_16020 PF03358 NADPH-dependent FMN reductase FIM01_16030 PF00849 RNA pseudouridylate synthase FIM01_16030 PF01479 S4 domain FIM01_16035 PF13525 Outer membrane lipoprotein FIM01_16040 PF10410 DnaB-helicase binding domain of primase FIM01_16040 PF01807 CHC2 zinc finger FIM01_16040 PF08275 DNA primase catalytic core, N-terminal domain FIM01_16040 PF08278 DNA primase DnaG DnaB-binding FIM01_16045 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain FIM01_16045 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain FIM01_16045 PF01488 Shikimate / quinate 5-dehydrogenase FIM01_16055 PF03550 Outer membrane lipoprotein LolB FIM01_16060 PF00288 GHMP kinases N terminal domain FIM01_16060 PF08544 GHMP kinases C terminal FIM01_16085 PF14572 Phosphoribosyl synthetase-associated domain FIM01_16085 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase FIM01_16090 PF01386 Ribosomal L25p family FIM01_16095 PF01195 Peptidyl-tRNA hydrolase FIM01_16100 PF02261 Aspartate decarboxylase FIM01_16115 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase FIM01_16125 PF03070 TENA/THI-4/PQQC family FIM01_16125 PF08543 Phosphomethylpyrimidine kinase FIM01_16125 PF02581 Thiamine monophosphate synthase FIM01_16130 PF01476 LysM domain FIM01_16130 PF04972 BON domain FIM01_16135 PF00550 Phosphopantetheine attachment site FIM01_16145 PF00698 Acyl transferase domain FIM01_16150 PF01783 Ribosomal L32p protein family FIM01_16155 PF02620 Large ribosomal RNA subunit accumulation protein YceD FIM01_16160 PF04315 Elongation factor P hydroxylase FIM01_16165 PF01300 Telomere recombination FIM01_16170 PF02616 Segregation and condensation protein ScpA FIM01_16175 PF04079 Segregation and condensation complex subunit ScpB FIM01_16180 PF01479 S4 domain FIM01_16180 PF00849 RNA pseudouridylate synthase FIM01_16195 PF00155 Aminotransferase class I and II FIM01_16200 PF00202 Aminotransferase class-III FIM01_16200 PF06968 Biotin and Thiamin Synthesis associated domain FIM01_16200 PF04055 Radical SAM superfamily FIM01_16205 PF12697 Alpha/beta hydrolase family FIM01_16205 PF08241 Methyltransferase domain FIM01_16210 PF02358 Trehalose-phosphatase FIM01_16215 PF00982 Glycosyltransferase family 20 FIM01_16220 PF07690 Major Facilitator Superfamily FIM01_16225 PF00210 Ferritin-like domain FIM01_16230 PF00533 BRCA1 C Terminus (BRCT) domain FIM01_16230 PF01653 NAD-dependent DNA ligase adenylation domain FIM01_16230 PF03120 NAD-dependent DNA ligase OB-fold domain FIM01_16230 PF12826 Helix-hairpin-helix motif FIM01_16230 PF03119 NAD-dependent DNA ligase C4 zinc finger domain FIM01_16240 PF02463 RecF/RecN/SMC N terminal domain FIM01_16240 PF06470 SMC proteins Flexible Hinge Domain FIM01_16250 PF01925 Sulfite exporter TauE/SafE FIM01_16260 PF03309 Type III pantothenate kinase FIM01_16265 PF02978 Signal peptide binding domain FIM01_16265 PF00448 SRP54-type protein, GTPase domain FIM01_16265 PF02881 SRP54-type protein, helical bundle domain FIM01_16275 PF01207 Dihydrouridine synthase (Dus) FIM01_16310 PF00692 dUTPase FIM01_16325 PF01048 Phosphorylase superfamily FIM01_16335 PF10609 NUBPL iron-transfer P-loop NTPase FIM01_16345 PF09334 tRNA synthetases class I (M) FIM01_16345 PF01588 Putative tRNA binding domain FIM01_16370 PF13533 Biotin-lipoyl like FIM01_16375 PF00291 Pyridoxal-phosphate dependent enzyme FIM01_16390 PF05552 Conserved TM helix FIM01_16405 PF00970 Oxidoreductase FAD-binding domain FIM01_16405 PF00175 Oxidoreductase NAD-binding domain FIM01_16410 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FIM01_16410 PF03466 LysR substrate binding domain FIM01_16420 PF00313 'Cold-shock' DNA-binding domain FIM01_16430 PF00361 Proton-conducting membrane transporter FIM01_16435 PF00361 Proton-conducting membrane transporter FIM01_16440 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus FIM01_16440 PF00361 Proton-conducting membrane transporter FIM01_16445 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L FIM01_16450 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 FIM01_16455 PF12838 4Fe-4S dicluster domain FIM01_16460 PF00146 NADH dehydrogenase FIM01_16465 PF04879 Molybdopterin oxidoreductase Fe4S4 domain FIM01_16465 PF00384 Molybdopterin oxidoreductase FIM01_16465 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region FIM01_16470 PF10531 SLBB domain FIM01_16470 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region FIM01_16470 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit FIM01_16480 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit FIM01_16480 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit FIM01_16485 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit FIM01_16490 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 FIM01_16495 PF00990 Diguanylate cyclase, GGDEF domain FIM01_16495 PF17151 Periplasmic sensor domain FIM01_16505 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FIM01_16505 PF00672 HAMP domain FIM01_16505 PF00512 His Kinase A (phospho-acceptor) domain FIM01_16510 PF00072 Response regulator receiver domain FIM01_16510 PF00486 Transcriptional regulatory protein, C terminal FIM01_16520 PF00317 Ribonucleotide reductase, all-alpha domain FIM01_16520 PF02867 Ribonucleotide reductase, barrel domain FIM01_16520 PF03477 ATP cone domain FIM01_16530 PF00268 Ribonucleotide reductase, small chain FIM01_16540 PF02567 Phenazine biosynthesis-like protein FIM01_16570 PF00440 Bacterial regulatory proteins, tetR family FIM01_16570 PF16295 Tetracyclin repressor-like, C-terminal domain FIM01_16590 PF01613 Flavin reductase like domain FIM01_16595 PF08267 Cobalamin-independent synthase, N-terminal domain FIM01_16595 PF01717 Cobalamin-independent synthase, Catalytic domain FIM01_16605 PF03466 LysR substrate binding domain FIM01_16605 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FIM01_16610 PF01810 LysE type translocator FIM01_16620 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term FIM01_16620 PF12833 Helix-turn-helix domain FIM01_16625 PF07687 Peptidase dimerisation domain FIM01_16625 PF01546 Peptidase family M20/M25/M40 FIM01_16635 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FIM01_16635 PF03466 LysR substrate binding domain FIM01_16645 PF07690 Major Facilitator Superfamily FIM01_16655 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FIM01_16655 PF03466 LysR substrate binding domain FIM01_16660 PF14537 Cytochrome c3 FIM01_16660 PF00890 FAD binding domain FIM01_16670 PF02515 CoA-transferase family III FIM01_16675 PF07690 Major Facilitator Superfamily FIM01_16680 PF02770 Acyl-CoA dehydrogenase, middle domain FIM01_16680 PF00441 Acyl-CoA dehydrogenase, C-terminal domain FIM01_16680 PF02771 Acyl-CoA dehydrogenase, N-terminal domain FIM01_16685 PF03466 LysR substrate binding domain FIM01_16685 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FIM01_16690 PF08240 Alcohol dehydrogenase GroES-like domain FIM01_16690 PF00107 Zinc-binding dehydrogenase FIM01_16695 PF00962 Adenosine/AMP deaminase FIM01_16725 PF02445 Quinolinate synthetase A protein FIM01_16730 PF01960 ArgJ family FIM01_16735 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain FIM01_16735 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain FIM01_16740 PF00893 Small Multidrug Resistance protein FIM01_16750 PF05275 Copper resistance protein B precursor (CopB) FIM01_16755 PF07731 Multicopper oxidase FIM01_16755 PF00394 Multicopper oxidase FIM01_16755 PF07732 Multicopper oxidase FIM01_16770 PF00834 Ribulose-phosphate 3 epimerase family FIM01_16780 PF00756 Putative esterase FIM01_16790 PF04445 Putative SAM-dependent methyltransferase FIM01_16795 PF00814 Glycoprotease family FIM01_16800 PF00132 Bacterial transferase hexapeptide (six repeats) FIM01_16805 PF00293 NUDIX domain FIM01_16845 PF04715 Anthranilate synthase component I, N terminal region FIM01_16845 PF00425 chorismate binding enzyme FIM01_16850 PF00155 Aminotransferase class I and II FIM01_16855 PF00815 Histidinol dehydrogenase FIM01_16860 PF01634 ATP phosphoribosyltransferase FIM01_16865 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) FIM01_16870 PF01722 BolA-like protein FIM01_16875 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein FIM01_16880 PF00309 Sigma-54 factor, Activator interacting domain (AID) FIM01_16880 PF04963 Sigma-54 factor, core binding domain FIM01_16880 PF04552 Sigma-54, DNA binding domain FIM01_16925 PF00795 Carbon-nitrogen hydrolase FIM01_16935 PF01047 MarR family FIM01_16940 PF02566 OsmC-like protein FIM01_16945 PF00437 Type II/IV secretion system protein FIM01_16965 PF01367 5'-3' exonuclease, C-terminal SAM fold FIM01_16965 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain FIM01_16965 PF00476 DNA polymerase family A FIM01_16965 PF01612 3'-5' exonuclease FIM01_16970 PF02325 YGGT family FIM01_16975 PF14748 Pyrroline-5-carboxylate reductase dimerisation FIM01_16975 PF03807 NADP oxidoreductase coenzyme F420-dependent FIM01_16980 PF01171 PP-loop family FIM01_16980 PF09179 TilS substrate binding domain FIM01_16980 PF11734 TilS substrate C-terminal domain FIM01_16985 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit FIM01_16990 PF02541 Ppx/GppA phosphatase family FIM01_16995 PF00085 Thioredoxin FIM01_17000 PF07497 Rho termination factor, RNA-binding domain FIM01_17000 PF07498 Rho termination factor, N-terminal domain FIM01_17000 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain FIM01_17015 PF00216 Bacterial DNA-binding protein FIM01_17020 PF03484 tRNA synthetase B5 domain FIM01_17020 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain FIM01_17020 PF01588 Putative tRNA binding domain FIM01_17020 PF03483 B3/4 domain FIM01_17020 PF03147 Ferredoxin-fold anticodon binding domain FIM01_17025 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain FIM01_17025 PF01409 tRNA synthetases class II core domain (F) FIM01_17040 PF00453 Ribosomal protein L20 FIM01_17045 PF01632 Ribosomal protein L35 FIM01_17050 PF07690 Major Facilitator Superfamily FIM01_17055 PF09335 SNARE associated Golgi protein FIM01_17060 PF00043 Glutathione S-transferase, C-terminal domain FIM01_17060 PF02798 Glutathione S-transferase, N-terminal domain FIM01_17065 PF00707 Translation initiation factor IF-3, C-terminal domain FIM01_17065 PF05198 Translation initiation factor IF-3, N-terminal domain FIM01_17070 PF03129 Anticodon binding domain FIM01_17070 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) FIM01_17070 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain FIM01_17070 PF02824 TGS domain FIM01_17075 PF13193 AMP-binding enzyme C-terminal domain FIM01_17075 PF00501 AMP-binding enzyme FIM01_17080 PF04751 Protein of unknown function (DUF615) FIM01_17085 PF00381 PTS HPr component phosphorylation site FIM01_17090 PF03668 P-loop ATPase protein family FIM01_17095 PF02569 Pantoate-beta-alanine ligase FIM01_17100 PF02548 Ketopantoate hydroxymethyltransferase FIM01_17105 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) FIM01_17110 PF12627 Probable RNA and SrmB- binding site of polymerase A FIM01_17110 PF12626 Polymerase A arginine-rich C-terminus FIM01_17110 PF01743 Poly A polymerase head domain FIM01_17120 PF03819 MazG nucleotide pyrophosphohydrolase domain FIM01_17130 PF13291 ACT domain FIM01_17130 PF04607 Region found in RelA / SpoT proteins FIM01_17130 PF02824 TGS domain FIM01_17135 PF05958 tRNA (Uracil-5-)-methyltransferase FIM01_17145 PF00291 Pyridoxal-phosphate dependent enzyme FIM01_17150 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) FIM01_17150 PF00072 Response regulator receiver domain FIM01_17150 PF01627 Hpt domain FIM01_17150 PF00512 His Kinase A (phospho-acceptor) domain FIM01_17150 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FIM01_17150 PF00672 HAMP domain FIM01_17155 PF00378 Enoyl-CoA hydratase/isomerase FIM01_17160 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase FIM01_17160 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase FIM01_17165 PF01261 Xylose isomerase-like TIM barrel FIM01_17175 PF00106 short chain dehydrogenase FIM01_17180 PF02233 NAD(P) transhydrogenase beta subunit FIM01_17185 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch FIM01_17190 PF01262 Alanine dehydrogenase/PNT, C-terminal domain FIM01_17190 PF05222 Alanine dehydrogenase/PNT, N-terminal domain FIM01_17195 PF00892 EamA-like transporter family FIM01_17205 PF07690 Major Facilitator Superfamily FIM01_17225 PF07732 Multicopper oxidase FIM01_17225 PF00394 Multicopper oxidase FIM01_17225 PF07731 Multicopper oxidase FIM01_17235 PF00486 Transcriptional regulatory protein, C terminal FIM01_17235 PF00072 Response regulator receiver domain FIM01_17240 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FIM01_17240 PF00672 HAMP domain FIM01_17240 PF00512 His Kinase A (phospho-acceptor) domain FIM01_17245 PF04945 YHS domain FIM01_17325 PF00589 Phage integrase family FIM01_17330 PF01207 Dihydrouridine synthase (Dus) FIM01_17340 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FIM01_17340 PF03466 LysR substrate binding domain FIM01_17350 PF00899 ThiF family FIM01_17355 PF00330 Aconitase family (aconitate hydratase) FIM01_17355 PF00694 Aconitase C-terminal domain FIM01_17360 PF01026 TatD related DNase FIM01_17375 PF00009 Elongation factor Tu GTP binding domain FIM01_17375 PF16658 Class II release factor RF3, C-terminal domain FIM01_17375 PF03144 Elongation factor Tu domain 2 FIM01_17400 PF03707 Bacterial signalling protein N terminal repeat FIM01_17400 PF00563 EAL domain FIM01_17400 PF00990 Diguanylate cyclase, GGDEF domain FIM01_17405 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain FIM01_17405 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain FIM01_17410 PF10369 Small subunit of acetolactate synthase FIM01_17415 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain FIM01_17415 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain FIM01_17415 PF00205 Thiamine pyrophosphate enzyme, central domain FIM01_17425 PF09334 tRNA synthetases class I (M) FIM01_17425 PF00133 tRNA synthetases class I (I, L, M and V) FIM01_17425 PF13603 Leucyl-tRNA synthetase, Domain 2 FIM01_17425 PF08264 Anticodon-binding domain of tRNA FIM01_17440 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion FIM01_17445 PF12704 MacB-like periplasmic core domain FIM01_17445 PF02687 FtsX-like permease family FIM01_17445 PF00005 ABC transporter FIM01_17450 PF02321 Outer membrane efflux protein FIM01_17465 PF00929 Exonuclease FIM01_17470 PF03193 RsgA GTPase FIM01_17480 PF00462 Glutaredoxin FIM01_17485 PF02556 Preprotein translocase subunit SecB FIM01_17495 PF01926 50S ribosome-binding GTPase FIM01_17495 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal FIM01_17500 PF13360 PQQ-like domain FIM01_17510 PF13393 Histidyl-tRNA synthetase FIM01_17510 PF03129 Anticodon binding domain FIM01_17515 PF04551 GcpE protein FIM01_17520 PF13464 Domain of unknown function (DUF4115) FIM01_17530 PF04055 Radical SAM superfamily FIM01_17535 PF00334 Nucleoside diphosphate kinase FIM01_17540 PF04384 Iron-sulphur cluster assembly FIM01_17545 PF01569 PAP2 superfamily FIM01_17550 PF13439 Glycosyltransferase Family 4 FIM01_17550 PF00534 Glycosyl transferases group 1 FIM01_17555 PF17804 Tail specific protease N-terminal domain FIM01_17555 PF11818 C-terminal domain of tail specific protease (DUF3340) FIM01_17555 PF00595 PDZ domain FIM01_17555 PF03572 Peptidase family S41 FIM01_17560 PF00933 Glycosyl hydrolase family 3 N terminal domain FIM01_17570 PF00561 alpha/beta hydrolase fold FIM01_17575 PF00171 Aldehyde dehydrogenase family FIM01_17580 PF00171 Aldehyde dehydrogenase family FIM01_17585 PF01202 Shikimate kinase FIM01_17590 PF02447 GntP family permease FIM01_17595 PF01081 KDPG and KHG aldolase FIM01_17600 PF00920 Dehydratase family FIM01_17605 PF00871 Acetokinase family FIM01_17610 PF07085 DRTGG domain FIM01_17610 PF01515 Phosphate acetyl/butaryl transferase FIM01_17615 PF05681 Fumarate hydratase (Fumerase) FIM01_17615 PF05683 Fumarase C-terminus FIM01_17630 PF06689 ClpX C4-type zinc finger FIM01_17630 PF10431 C-terminal, D2-small domain, of ClpB protein FIM01_17630 PF07724 AAA domain (Cdc48 subfamily) FIM01_17635 PF00574 Clp protease FIM01_17640 PF05698 Bacterial trigger factor protein (TF) C-terminus FIM01_17640 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase FIM01_17640 PF05697 Bacterial trigger factor protein (TF) FIM01_17645 PF07715 TonB-dependent Receptor Plug Domain FIM01_17645 PF00593 TonB dependent receptor FIM01_17650 PF18331 PKHD-type hydroxylase C-terminal domain FIM01_17650 PF13640 2OG-Fe(II) oxygenase superfamily FIM01_17655 PF08502 LeuA allosteric (dimerisation) domain FIM01_17655 PF00682 HMGL-like FIM01_17660 PF00561 alpha/beta hydrolase fold FIM01_17665 PF07021 Methionine biosynthesis protein MetW FIM01_17665 PF00561 alpha/beta hydrolase fold FIM01_17675 PF01725 Ham1 family FIM01_17685 PF02416 mttA/Hcf106 family FIM01_17690 PF02416 mttA/Hcf106 family FIM01_17695 PF00902 Sec-independent protein translocase protein (TatC) FIM01_17715 PF01790 Prolipoprotein diacylglyceryl transferase FIM01_17730 PF00303 Thymidylate synthase FIM01_17735 PF00186 Dihydrofolate reductase FIM01_17745 PF01625 Peptide methionine sulfoxide reductase FIM01_17755 PF01618 MotA/TolQ/ExbB proton channel family FIM01_17765 PF00551 Formyl transferase FIM01_17765 PF01842 ACT domain FIM01_17775 PF00171 Aldehyde dehydrogenase family FIM01_17780 PF00830 Ribosomal L28 family FIM01_17785 PF00471 Ribosomal protein L33 FIM01_17790 PF02254 TrkA-N domain FIM01_17790 PF00999 Sodium/hydrogen exchanger family FIM01_17810 PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) FIM01_17815 PF13361 UvrD-like helicase C-terminal domain FIM01_17815 PF00580 UvrD/REP helicase N-terminal domain FIM01_17830 PF08272 Topoisomerase I zinc-ribbon-like FIM01_17830 PF01131 DNA topoisomerase FIM01_17830 PF01751 Toprim domain FIM01_17830 PF01396 Topoisomerase DNA binding C4 zinc finger FIM01_17840 PF01638 HxlR-like helix-turn-helix FIM01_17845 PF08240 Alcohol dehydrogenase GroES-like domain FIM01_17845 PF00107 Zinc-binding dehydrogenase FIM01_17860 PF01810 LysE type translocator FIM01_17865 PF03279 Bacterial lipid A biosynthesis acyltransferase FIM01_17875 PF00375 Sodium:dicarboxylate symporter family FIM01_17885 PF02774 Semialdehyde dehydrogenase, dimerisation domain FIM01_17885 PF01118 Semialdehyde dehydrogenase, NAD binding domain FIM01_17905 PF01416 tRNA pseudouridine synthase FIM01_17915 PF01176 Translation initiation factor 1A / IF-1 FIM01_17930 PF00180 Isocitrate/isopropylmalate dehydrogenase FIM01_17940 PF00694 Aconitase C-terminal domain FIM01_17945 PF00330 Aconitase family (aconitate hydratase) FIM01_17955 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FIM01_17955 PF03466 LysR substrate binding domain FIM01_17965 PF00293 NUDIX domain FIM01_17970 PF02896 PEP-utilising enzyme, TIM barrel domain FIM01_17970 PF01590 GAF domain FIM01_17970 PF00391 PEP-utilising enzyme, mobile domain FIM01_17970 PF05524 PEP-utilising enzyme, N-terminal FIM01_17975 PF00141 Peroxidase FIM01_17980 PF12706 Beta-lactamase superfamily domain FIM01_17985 PF03466 LysR substrate binding domain FIM01_17985 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FIM01_17995 PF02798 Glutathione S-transferase, N-terminal domain FIM01_18000 PF08279 HTH domain FIM01_18000 PF13280 WYL domain FIM01_18005 PF13419 Haloacid dehalogenase-like hydrolase FIM01_18010 PF01479 S4 domain FIM01_18010 PF00849 RNA pseudouridylate synthase FIM01_18020 PF10150 Ribonuclease E/G family FIM01_18020 PF12111 Polyribonucleotide phosphorylase C terminal FIM01_18020 PF00575 S1 RNA binding domain FIM01_18025 PF00501 AMP-binding enzyme FIM01_18025 PF13193 AMP-binding enzyme C-terminal domain FIM01_18040 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FIM01_18040 PF03466 LysR substrate binding domain FIM01_18045 PF00106 short chain dehydrogenase FIM01_18050 PF06969 HemN C-terminal domain FIM01_18050 PF04055 Radical SAM superfamily FIM01_18060 PF01554 MatE FIM01_18065 PF02771 Acyl-CoA dehydrogenase, N-terminal domain FIM01_18065 PF08028 Acyl-CoA dehydrogenase, C-terminal domain FIM01_18065 PF02770 Acyl-CoA dehydrogenase, middle domain FIM01_18070 PF02771 Acyl-CoA dehydrogenase, N-terminal domain FIM01_18070 PF08028 Acyl-CoA dehydrogenase, C-terminal domain FIM01_18075 PF03109 ABC1 family FIM01_18080 PF01197 Ribosomal protein L31 FIM01_18090 PF02537 CrcB-like protein, Camphor Resistance (CrcB) FIM01_18110 PF03884 DNA gyrase inhibitor YacG FIM01_18115 PF00753 Metallo-beta-lactamase superfamily FIM01_18120 PF00762 Ferrochelatase FIM01_18130 PF01177 Asp/Glu/Hydantoin racemase FIM01_18150 PF01206 Sulfurtransferase TusA FIM01_18155 PF00571 CBS domain FIM01_18155 PF03471 Transporter associated domain FIM01_18160 PF00795 Carbon-nitrogen hydrolase FIM01_18165 PF01588 Putative tRNA binding domain FIM01_18175 PF07963 Prokaryotic N-terminal methylation motif FIM01_18175 PF08334 Type II secretion system (T2SS), protein G FIM01_18180 PF00482 Type II secretion system (T2SS), protein F FIM01_18185 PF00271 Helicase conserved C-terminal domain FIM01_18185 PF17764 3′ DNA-binding domain (3′BD) FIM01_18185 PF00270 DEAD/DEAH box helicase FIM01_18185 PF18319 PriA DNA helicase Cys-rich region (CRR) domain FIM01_18185 PF18074 Primosomal protein N C-terminal domain FIM01_18190 PF02254 TrkA-N domain FIM01_18190 PF00999 Sodium/hydrogen exchanger family FIM01_18195 PF01430 Hsp33 protein FIM01_18205 PF00226 DnaJ domain FIM01_18205 PF01556 DnaJ C terminal domain FIM01_18215 PF01544 CorA-like Mg2+ transporter protein FIM01_18220 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain FIM01_18220 PF01138 3' exoribonuclease family, domain 1 FIM01_18220 PF03725 3' exoribonuclease family, domain 2 FIM01_18220 PF00575 S1 RNA binding domain FIM01_18220 PF00013 KH domain FIM01_18225 PF00312 Ribosomal protein S15 FIM01_18235 PF13538 UvrD-like helicase C-terminal domain FIM01_18240 PF13361 UvrD-like helicase C-terminal domain FIM01_18240 PF00580 UvrD/REP helicase N-terminal domain FIM01_18240 PF12705 PD-(D/E)XK nuclease superfamily FIM01_18245 PF17946 RecC C-terminal domain FIM01_18255 PF03976 Polyphosphate kinase 2 (PPK2) FIM01_18265 PF01209 ubiE/COQ5 methyltransferase family FIM01_18275 PF03109 ABC1 family FIM01_18280 PF01494 FAD binding domain FIM01_18285 PF01502 Phosphoribosyl-AMP cyclohydrolase FIM01_18300 PF13244 Domain of unknown function (DUF4040) FIM01_18300 PF04039 Domain related to MnhB subunit of Na+/H+ antiporter FIM01_18300 PF00361 Proton-conducting membrane transporter FIM01_18300 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus FIM01_18305 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L FIM01_18310 PF00361 Proton-conducting membrane transporter FIM01_18320 PF04066 Multiple resistance and pH regulation protein F (MrpF / PhaF) FIM01_18330 PF02033 Ribosome-binding factor A FIM01_18335 PF04760 Translation initiation factor IF-2, N-terminal region FIM01_18335 PF11987 Translation-initiation factor 2 FIM01_18335 PF00009 Elongation factor Tu GTP binding domain FIM01_18335 PF08364 Bacterial translation initiation factor IF-2 associated region FIM01_18340 PF13184 NusA-like KH domain FIM01_18340 PF08529 NusA N-terminal domain FIM01_18340 PF00575 S1 RNA binding domain FIM01_18345 PF17384 RimP C-terminal SH3 domain FIM01_18345 PF02576 RimP N-terminal domain FIM01_18365 PF03840 Preprotein translocase SecG subunit FIM01_18370 PF00121 Triosephosphate isomerase FIM01_18375 PF00437 Type II/IV secretion system protein FIM01_18375 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain FIM01_18380 PF00482 Type II secretion system (T2SS), protein F FIM01_18385 PF06750 Bacterial Peptidase A24 N-terminal domain FIM01_18385 PF01478 Type IV leader peptidase family FIM01_18390 PF01121 Dephospho-CoA kinase FIM01_18400 PF00588 SpoU rRNA Methylase family FIM01_18400 PF08032 RNA 2'-O ribose methyltransferase substrate binding FIM01_18405 PF06865 Pyrimidine/purine nucleoside phosphorylase FIM01_18415 PF02463 RecF/RecN/SMC N terminal domain FIM01_18420 PF02622 Uncharacterized ACR, COG1678 FIM01_18425 PF03652 Holliday junction resolvase FIM01_18430 PF13533 Biotin-lipoyl like FIM01_18455 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain FIM01_18455 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain FIM01_18455 PF02805 Metal binding domain of Ada FIM01_18455 PF12833 Helix-turn-helix domain FIM01_18460 PF01066 CDP-alcohol phosphatidyltransferase FIM01_18470 PF08459 UvrC Helix-hairpin-helix N-terminal FIM01_18470 PF02151 UvrB/uvrC motif FIM01_18470 PF01541 GIY-YIG catalytic domain FIM01_18490 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain FIM01_18490 PF00378 Enoyl-CoA hydratase/isomerase FIM01_18490 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain FIM01_18495 PF00108 Thiolase, N-terminal domain FIM01_18495 PF02803 Thiolase, C-terminal domain FIM01_18510 PF09278 MerR, DNA binding FIM01_18510 PF00376 MerR family regulatory protein FIM01_18520 PF01323 DSBA-like thioredoxin domain FIM01_18535 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FIM01_18535 PF00183 Hsp90 protein FIM01_18555 PF03553 Na+/H+ antiporter family FIM01_18555 PF13726 Na+-H+ antiporter family FIM01_18580 PF04998 RNA polymerase Rpb1, domain 5 FIM01_18580 PF05000 RNA polymerase Rpb1, domain 4 FIM01_18580 PF04983 RNA polymerase Rpb1, domain 3 FIM01_18580 PF00623 RNA polymerase Rpb1, domain 2 FIM01_18580 PF04997 RNA polymerase Rpb1, domain 1 FIM01_18585 PF04560 RNA polymerase Rpb2, domain 7 FIM01_18585 PF04565 RNA polymerase Rpb2, domain 3 FIM01_18585 PF00562 RNA polymerase Rpb2, domain 6 FIM01_18585 PF04561 RNA polymerase Rpb2, domain 2 FIM01_18585 PF10385 RNA polymerase beta subunit external 1 domain FIM01_18585 PF04563 RNA polymerase beta subunit FIM01_18590 PF00542 Ribosomal protein L7/L12 C-terminal domain FIM01_18590 PF16320 Ribosomal protein L7/L12 dimerisation domain FIM01_18595 PF00466 Ribosomal protein L10 FIM01_18600 PF00687 Ribosomal protein L1p/L10e family FIM01_18605 PF00298 Ribosomal protein L11, RNA binding domain FIM01_18605 PF03946 Ribosomal protein L11, N-terminal domain FIM01_18610 PF02357 Transcription termination factor nusG FIM01_18610 PF00467 KOW motif FIM01_18615 PF00584 SecE/Sec61-gamma subunits of protein translocation complex FIM01_18625 PF03143 Elongation factor Tu C-terminal domain FIM01_18625 PF03144 Elongation factor Tu domain 2 FIM01_18625 PF00009 Elongation factor Tu GTP binding domain FIM01_18650 PF04715 Anthranilate synthase component I, N terminal region FIM01_18650 PF00425 chorismate binding enzyme FIM01_18655 PF13419 Haloacid dehalogenase-like hydrolase FIM01_18660 PF12401 Protein of unknown function (DUF2662) FIM01_18660 PF00498 FHA domain FIM01_18665 PF00263 Bacterial type II and III secretion system protein FIM01_18665 PF03958 Bacterial type II/III secretion system short domain FIM01_18680 PF00816 H-NS histone family FIM01_18705 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain FIM01_18705 PF03900 Porphobilinogen deaminase, C-terminal domain FIM01_18710 PF00072 Response regulator receiver domain FIM01_18710 PF04397 LytTr DNA-binding domain FIM01_18715 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FIM01_18715 PF06580 Histidine kinase FIM01_18715 PF07694 5TMR of 5TMR-LYT FIM01_18720 PF00206 Lyase FIM01_18720 PF14698 Argininosuccinate lyase C-terminal FIM01_18725 PF04362 Bacterial Fe(2+) trafficking FIM01_18730 PF01895 PhoU domain FIM01_18735 PF02321 Outer membrane efflux protein FIM01_18740 PF00892 EamA-like transporter family FIM01_18755 PF01964 Radical SAM ThiC family FIM01_18755 PF13667 ThiC-associated domain FIM01_18760 PF00293 NUDIX domain FIM01_18765 PF00149 Calcineurin-like phosphoesterase FIM01_18770 PF01258 Prokaryotic dksA/traR C4-type zinc finger FIM01_18775 PF00749 tRNA synthetases class I (E and Q), catalytic domain FIM01_18780 PF01098 Cell cycle protein FIM01_18785 PF08245 Mur ligase middle domain FIM01_18785 PF02875 Mur ligase family, glutamate ligase domain FIM01_18795 PF07664 Ferrous iron transport protein B C terminus FIM01_18795 PF02421 Ferrous iron transport protein B FIM01_18795 PF07670 Nucleoside recognition FIM01_18805 PF02899 Phage integrase, N-terminal SAM-like domain FIM01_18805 PF00589 Phage integrase family FIM01_18810 PF13098 Thioredoxin-like domain FIM01_18810 PF10411 Disulfide bond isomerase protein N-terminus FIM01_18815 PF00742 Homoserine dehydrogenase FIM01_18815 PF03447 Homoserine dehydrogenase, NAD binding domain FIM01_18815 PF01842 ACT domain FIM01_18820 PF00291 Pyridoxal-phosphate dependent enzyme FIM01_18825 PF00768 D-alanyl-D-alanine carboxypeptidase FIM01_18830 PF00196 Bacterial regulatory proteins, luxR family FIM01_18830 PF00072 Response regulator receiver domain FIM01_18835 PF00512 His Kinase A (phospho-acceptor) domain FIM01_18835 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FIM01_18840 PF02954 Bacterial regulatory protein, Fis family FIM01_18840 PF00072 Response regulator receiver domain FIM01_18840 PF00158 Sigma-54 interaction domain FIM01_18845 PF03572 Peptidase family S41 FIM01_18845 PF00595 PDZ domain FIM01_18850 PF06415 BPG-independent PGAM N-terminus (iPGM_N) FIM01_18850 PF01676 Metalloenzyme superfamily FIM01_18855 PF03739 Lipopolysaccharide export system permease LptF/LptG FIM01_18865 PF02789 Cytosol aminopeptidase family, N-terminal domain FIM01_18865 PF00883 Cytosol aminopeptidase family, catalytic domain FIM01_18885 PF00677 Lumazine binding domain FIM01_18895 PF01872 RibD C-terminal domain FIM01_18895 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region FIM01_18900 PF03477 ATP cone domain FIM01_18905 PF00909 Ammonium Transporter Family FIM01_18910 PF00543 Nitrogen regulatory protein P-II FIM01_18920 PF13335 Magnesium chelatase, subunit ChlI C-terminal FIM01_18920 PF01078 Magnesium chelatase, subunit ChlI FIM01_18930 PF00916 Sulfate permease family FIM01_18930 PF01740 STAS domain FIM01_18950 PF01252 Signal peptidase (SPase) II FIM01_18960 PF13411 MerR HTH family regulatory protein FIM01_18965 PF03743 Bacterial conjugation TrbI-like protein FIM01_19000 PF00809 Pterin binding enzyme FIM01_19005 PF00893 Small Multidrug Resistance protein FIM01_19010 PF13427 Domain of unknown function (DUF4111) FIM01_19010 PF01909 Nucleotidyltransferase domain FIM01_19025 PF00583 Acetyltransferase (GNAT) family FIM01_19030 PF13495 Phage integrase, N-terminal SAM-like domain FIM01_19030 PF00589 Phage integrase family FIM01_19035 PF00563 EAL domain FIM01_19035 PF11809 Domain of unknown function (DUF3330) FIM01_19040 PF13610 DDE domain FIM01_19060 PF00892 EamA-like transporter family FIM01_19065 PF07690 Major Facilitator Superfamily FIM01_19070 PF02909 Tetracyclin repressor-like, C-terminal domain FIM01_19070 PF00440 Bacterial regulatory proteins, tetR family FIM01_19080 PF09278 MerR, DNA binding FIM01_19080 PF00376 MerR family regulatory protein FIM01_19085 PF02411 MerT mercuric transport protein FIM01_19090 PF00403 Heavy-metal-associated domain FIM01_19095 PF03203 MerC mercury resistance protein FIM01_19100 PF00403 Heavy-metal-associated domain FIM01_19100 PF07992 Pyridine nucleotide-disulphide oxidoreductase FIM01_19100 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain FIM01_19105 PF13411 MerR HTH family regulatory protein FIM01_19110 PF05052 MerE protein FIM01_19120 PF11809 Domain of unknown function (DUF3330) FIM01_19120 PF00563 EAL domain FIM01_19135 PF13610 DDE domain FIM01_19155 PF00809 Pterin binding enzyme FIM01_19180 PF01396 Topoisomerase DNA binding C4 zinc finger FIM01_19180 PF01751 Toprim domain FIM01_19180 PF01131 DNA topoisomerase FIM01_19200 PF01252 Signal peptidase (SPase) II FIM01_19210 PF13411 MerR HTH family regulatory protein FIM01_19220 PF03960 ArsC family FIM01_19225 PF01022 Bacterial regulatory protein, arsR family FIM01_19235 PF01758 Sodium Bile acid symporter family FIM01_19240 PF03358 NADPH-dependent FMN reductase FIM01_19245 PF07992 Pyridine nucleotide-disulphide oxidoreductase FIM01_19270 PF00665 Integrase core domain FIM01_19280 PF01078 Magnesium chelatase, subunit ChlI FIM01_19280 PF13335 Magnesium chelatase, subunit ChlI C-terminal FIM01_19285 PF00392 Bacterial regulatory proteins, gntR family FIM01_19285 PF00155 Aminotransferase class I and II FIM01_19295 PF00701 Dihydrodipicolinate synthetase family FIM01_19305 PF03573 outer membrane porin, OprD family FIM01_19310 PF00719 Inorganic pyrophosphatase FIM01_19325 PF13193 AMP-binding enzyme C-terminal domain FIM01_19325 PF00501 AMP-binding enzyme FIM01_19330 PF00521 DNA gyrase/topoisomerase IV, subunit A FIM01_19330 PF03989 DNA gyrase C-terminal domain, beta-propeller FIM01_19335 PF07690 Major Facilitator Superfamily FIM01_19340 PF03458 UPF0126 domain FIM01_19345 PF02810 SEC-C motif FIM01_19350 PF03741 Integral membrane protein TerC family FIM01_19350 PF03471 Transporter associated domain FIM01_19355 PF03641 Possible lysine decarboxylase FIM01_19360 PF07690 Major Facilitator Superfamily FIM01_19370 PF11798 IMS family HHH motif FIM01_19370 PF11799 impB/mucB/samB family C-terminal domain FIM01_19370 PF00817 impB/mucB/samB family FIM01_19385 PF04055 Radical SAM superfamily FIM01_19385 PF08497 Radical SAM N-terminal FIM01_19385 PF11842 Domain of unknown function (DUF3362) FIM01_19405 PF03358 NADPH-dependent FMN reductase FIM01_19415 PF00291 Pyridoxal-phosphate dependent enzyme FIM01_19450 PF00440 Bacterial regulatory proteins, tetR family FIM01_19475 PF01327 Polypeptide deformylase FIM01_19485 PF17782 DprA winged helix domain FIM01_19485 PF02481 DNA recombination-mediator protein A FIM01_19490 PF01300 Telomere recombination FIM01_19495 PF00892 EamA-like transporter family FIM01_19500 PF00440 Bacterial regulatory proteins, tetR family FIM01_19505 PF07690 Major Facilitator Superfamily FIM01_19515 PF00255 Glutathione peroxidase FIM01_19525 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain FIM01_19530 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain FIM01_19530 PF02874 ATP synthase alpha/beta family, beta-barrel domain FIM01_19535 PF00231 ATP synthase FIM01_19540 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain FIM01_19540 PF00306 ATP synthase alpha/beta chain, C terminal domain FIM01_19540 PF02874 ATP synthase alpha/beta family, beta-barrel domain FIM01_19545 PF00213 ATP synthase delta (OSCP) subunit FIM01_19550 PF00430 ATP synthase B/B' CF(0) FIM01_19555 PF00137 ATP synthase subunit C FIM01_19560 PF00119 ATP synthase A chain FIM01_19580 PF00005 ABC transporter FIM01_19585 PF00950 ABC 3 transport family FIM01_19590 PF01810 LysE type translocator FIM01_19595 PF04261 Dyp-type peroxidase family FIM01_19600 PF00390 Malic enzyme, N-terminal domain FIM01_19600 PF03949 Malic enzyme, NAD binding domain FIM01_19605 PF00750 tRNA synthetases class I (R) FIM01_19605 PF05746 DALR anticodon binding domain FIM01_19605 PF03485 Arginyl tRNA synthetase N terminal domain FIM01_19625 PF05726 Pirin C-terminal cupin domain FIM01_19625 PF02678 Pirin FIM01_19635 PF03551 Transcriptional regulator PadR-like family FIM01_19640 PF01909 Nucleotidyltransferase domain FIM01_19640 PF13427 Domain of unknown function (DUF4111) FIM01_19645 PF02540 NAD synthase FIM01_19645 PF00958 GMP synthase C terminal domain FIM01_19645 PF00117 Glutamine amidotransferase class-I FIM01_19650 PF04286 Protein of unknown function (DUF445) FIM01_19655 PF07681 DoxX FIM01_19660 PF09335 SNARE associated Golgi protein FIM01_19675 PF13614 AAA domain FIM01_19685 PF01722 BolA-like protein FIM01_19700 PF01648 4'-phosphopantetheinyl transferase superfamily FIM01_19705 PF12697 Alpha/beta hydrolase family FIM01_19720 PF00975 Thioesterase domain FIM01_19720 PF00550 Phosphopantetheine attachment site FIM01_19720 PF13193 AMP-binding enzyme C-terminal domain FIM01_19720 PF00501 AMP-binding enzyme FIM01_19720 PF00668 Condensation domain FIM01_19725 PF08242 Methyltransferase domain FIM01_19725 PF00550 Phosphopantetheine attachment site FIM01_19725 PF02801 Beta-ketoacyl synthase, C-terminal domain FIM01_19725 PF00109 Beta-ketoacyl synthase, N-terminal domain FIM01_19725 PF16197 Ketoacyl-synthetase C-terminal extension FIM01_19725 PF14765 Polyketide synthase dehydratase FIM01_19725 PF00975 Thioesterase domain FIM01_19730 PF00441 Acyl-CoA dehydrogenase, C-terminal domain FIM01_19730 PF02771 Acyl-CoA dehydrogenase, N-terminal domain FIM01_19730 PF02770 Acyl-CoA dehydrogenase, middle domain FIM01_19735 PF00501 AMP-binding enzyme FIM01_19740 PF03472 Autoinducer binding domain FIM01_19740 PF00196 Bacterial regulatory proteins, luxR family FIM01_19750 PF00765 Autoinducer synthase FIM01_19755 PF07690 Major Facilitator Superfamily FIM01_19755 PF00083 Sugar (and other) transporter FIM01_19760 PF00378 Enoyl-CoA hydratase/isomerase FIM01_19765 PF00378 Enoyl-CoA hydratase/isomerase FIM01_19770 PF00441 Acyl-CoA dehydrogenase, C-terminal domain FIM01_19770 PF02770 Acyl-CoA dehydrogenase, middle domain FIM01_19770 PF02771 Acyl-CoA dehydrogenase, N-terminal domain FIM01_19775 PF00501 AMP-binding enzyme FIM01_19775 PF13193 AMP-binding enzyme C-terminal domain FIM01_19780 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase FIM01_19780 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase FIM01_19785 PF00171 Aldehyde dehydrogenase family FIM01_19795 PF00324 Amino acid permease FIM01_19800 PF00324 Amino acid permease FIM01_19805 PF01042 Endoribonuclease L-PSP FIM01_19810 PF00842 Alanine racemase, C-terminal domain FIM01_19810 PF01168 Alanine racemase, N-terminal domain FIM01_19815 PF01266 FAD dependent oxidoreductase FIM01_19820 PF01037 Lrp/AsnC ligand binding domain FIM01_19830 PF07715 TonB-dependent Receptor Plug Domain FIM01_19830 PF00593 TonB dependent receptor FIM01_19845 PF00849 RNA pseudouridylate synthase FIM01_19895 PF00330 Aconitase family (aconitate hydratase) FIM01_19895 PF00694 Aconitase C-terminal domain FIM01_19900 PF00285 Citrate synthase, C-terminal domain FIM01_19910 PF07729 FCD domain FIM01_19910 PF00392 Bacterial regulatory proteins, gntR family FIM01_19915 PF00155 Aminotransferase class I and II FIM01_19920 PF09330 D-lactate dehydrogenase, membrane binding FIM01_19920 PF01565 FAD binding domain FIM01_19925 PF01070 FMN-dependent dehydrogenase FIM01_19930 PF00392 Bacterial regulatory proteins, gntR family FIM01_19930 PF07729 FCD domain FIM01_19935 PF02652 L-lactate permease FIM01_19940 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II FIM01_19940 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I FIM01_19940 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III FIM01_19940 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain FIM01_19945 PF00342 Phosphoglucose isomerase FIM01_19950 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain FIM01_19950 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain FIM01_19950 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain FIM01_19955 PF00483 Nucleotidyl transferase FIM01_19960 PF02719 Polysaccharide biosynthesis protein FIM01_19965 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family FIM01_19970 PF17836 PglD N-terminal domain FIM01_19970 PF00132 Bacterial transferase hexapeptide (six repeats) FIM01_19970 PF14602 Hexapeptide repeat of succinyl-transferase FIM01_19975 PF02397 Bacterial sugar transferase FIM01_19980 PF13477 Glycosyl transferase 4-like FIM01_19980 PF00534 Glycosyl transferases group 1 FIM01_19990 PF13439 Glycosyltransferase Family 4 FIM01_19990 PF00534 Glycosyl transferases group 1 FIM01_20005 PF01370 NAD dependent epimerase/dehydratase family FIM01_20010 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain FIM01_20010 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain FIM01_20010 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain FIM01_20015 PF02563 Polysaccharide biosynthesis/export protein FIM01_20015 PF10531 SLBB domain FIM01_20015 PF18412 Outer-membrane lipoprotein Wza C-terminal domain FIM01_20020 PF01451 Low molecular weight phosphotyrosine protein phosphatase FIM01_20025 PF02706 Chain length determinant protein FIM01_20025 PF13807 G-rich domain on putative tyrosine kinase FIM01_20025 PF13614 AAA domain FIM01_20030 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase FIM01_20030 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase FIM01_20035 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase FIM01_20035 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase FIM01_20040 PF03023 Lipid II flippase MurJ FIM01_20045 PF01510 N-acetylmuramoyl-L-alanine amidase FIM01_20050 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain FIM01_20050 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain FIM01_20060 PF04185 Phosphoesterase family FIM01_20060 PF05506 Domain of unknown function (DUF756) FIM01_20065 PF01138 3' exoribonuclease family, domain 1 FIM01_20065 PF03725 3' exoribonuclease family, domain 2 FIM01_20070 PF00487 Fatty acid desaturase FIM01_20075 PF00175 Oxidoreductase NAD-binding domain FIM01_20080 PF00440 Bacterial regulatory proteins, tetR family FIM01_20085 PF08360 QacR-like protein, C-terminal region FIM01_20085 PF00440 Bacterial regulatory proteins, tetR family FIM01_20090 PF01323 DSBA-like thioredoxin domain FIM01_20100 PF13419 Haloacid dehalogenase-like hydrolase FIM01_20105 PF00106 short chain dehydrogenase FIM01_20120 PF00583 Acetyltransferase (GNAT) family FIM01_20120 PF00696 Amino acid kinase family FIM01_20125 PF09084 NMT1/THI5 like FIM01_20130 PF09084 NMT1/THI5 like FIM01_20135 PF00296 Luciferase-like monooxygenase FIM01_20140 PF00528 Binding-protein-dependent transport system inner membrane component FIM01_20145 PF00005 ABC transporter FIM01_20150 PF00440 Bacterial regulatory proteins, tetR family FIM01_20150 PF08362 YcdC-like protein, C-terminal region FIM01_20155 PF01048 Phosphorylase superfamily FIM01_20170 PF01687 Riboflavin kinase FIM01_20170 PF06574 FAD synthetase FIM01_20175 PF06827 Zinc finger found in FPG and IleRS FIM01_20175 PF00133 tRNA synthetases class I (I, L, M and V) FIM01_20175 PF08264 Anticodon-binding domain of tRNA FIM01_20180 PF01252 Signal peptidase (SPase) II FIM01_20185 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase FIM01_20225 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD FIM01_20230 PF07859 alpha/beta hydrolase fold FIM01_20255 PF01025 GrpE FIM01_20260 PF00012 Hsp70 protein FIM01_20280 PF13406 Transglycosylase SLT domain FIM01_20285 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain FIM01_20285 PF02222 ATP-grasp domain FIM01_20290 PF00731 AIR carboxylase FIM01_20305 PF01225 Mur ligase family, catalytic domain FIM01_20305 PF02875 Mur ligase family, glutamate ligase domain FIM01_20305 PF08245 Mur ligase middle domain FIM01_20315 PF01569 PAP2 superfamily FIM01_20325 PF03741 Integral membrane protein TerC family FIM01_20335 PF03738 Glutathionylspermidine synthase preATP-grasp FIM01_20340 PF00355 Rieske [2Fe-2S] domain FIM01_20345 PF01979 Amidohydrolase family FIM01_20350 PF00156 Phosphoribosyl transferase domain FIM01_20360 PF13098 Thioredoxin-like domain FIM01_20360 PF10411 Disulfide bond isomerase protein N-terminus FIM01_20365 PF16916 Dimerisation domain of Zinc Transporter FIM01_20365 PF01545 Cation efflux family FIM01_20370 PF02583 Metal-sensitive transcriptional repressor FIM01_20375 PF01926 50S ribosome-binding GTPase FIM01_20375 PF12631 MnmE helical domain FIM01_20375 PF10396 GTP-binding protein TrmE N-terminus FIM01_20380 PF02096 60Kd inner membrane protein FIM01_20380 PF14849 YidC periplasmic domain FIM01_20385 PF01809 Putative membrane protein insertion efficiency factor FIM01_20390 PF00825 Ribonuclease P FIM01_20395 PF00468 Ribosomal protein L34