locus-tag class description ABK1_0001 PF00579 tRNA synthetases class I (W and Y) ABK1_0002 PF03702 Anhydro-N-acetylmuramic acid kinase ABK1_0003 PF00561 alpha/beta hydrolase fold ABK1_0004 PF01521 Iron-sulphur cluster biosynthesis ABK1_0008 PF12848 ABC transporter ABK1_0008 PF00005 ABC transporter ABK1_0009 PF09335 SNARE associated Golgi protein ABK1_0011 PF01751 Toprim domain ABK1_0011 PF18053 DNA gyrase B subunit insert domain ABK1_0011 PF00986 DNA gyrase B subunit, carboxyl terminus ABK1_0011 PF00204 DNA gyrase B ABK1_0011 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ABK1_0012 PF02463 RecF/RecN/SMC N terminal domain ABK1_0013 PF00712 DNA polymerase III beta subunit, N-terminal domain ABK1_0013 PF02767 DNA polymerase III beta subunit, central domain ABK1_0013 PF02768 DNA polymerase III beta subunit, C-terminal domain ABK1_0014 PF08299 Bacterial dnaA protein helix-turn-helix ABK1_0014 PF11638 DnaA N-terminal domain ABK1_0014 PF00308 Bacterial dnaA protein ABK1_0015 PF00468 Ribosomal protein L34 ABK1_0016 PF00825 Ribonuclease P ABK1_0017 PF01809 Putative membrane protein insertion efficiency factor ABK1_0018 PF14849 YidC periplasmic domain ABK1_0018 PF02096 60Kd inner membrane protein ABK1_0019 PF10396 GTP-binding protein TrmE N-terminus ABK1_0019 PF12631 MnmE helical domain ABK1_0019 PF01926 50S ribosome-binding GTPase ABK1_0020 PF02583 Metal-sensitive transcriptional repressor ABK1_0021 PF16916 Dimerisation domain of Zinc Transporter ABK1_0021 PF01545 Cation efflux family ABK1_0022 PF10411 Disulfide bond isomerase protein N-terminus ABK1_0022 PF13098 Thioredoxin-like domain ABK1_0024 PF00156 Phosphoribosyl transferase domain ABK1_0025 PF01979 Amidohydrolase family ABK1_0026 PF00355 Rieske [2Fe-2S] domain ABK1_0027 PF03738 Glutathionylspermidine synthase preATP-grasp ABK1_0029 PF03741 Integral membrane protein TerC family ABK1_0030 PF01569 PAP2 superfamily ABK1_0032 PF08245 Mur ligase middle domain ABK1_0032 PF02875 Mur ligase family, glutamate ligase domain ABK1_0032 PF01225 Mur ligase family, catalytic domain ABK1_0034 PF00731 AIR carboxylase ABK1_0035 PF02222 ATP-grasp domain ABK1_0035 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain ABK1_0036 PF13406 Transglycosylase SLT domain ABK1_0040 PF00012 Hsp70 protein ABK1_0041 PF01025 GrpE ABK1_0042 PF03466 LysR substrate binding domain ABK1_0042 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ABK1_0046 PF07859 alpha/beta hydrolase fold ABK1_0047 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD ABK1_0050 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase ABK1_0051 PF01252 Signal peptidase (SPase) II ABK1_0052 PF06827 Zinc finger found in FPG and IleRS ABK1_0052 PF08264 Anticodon-binding domain of tRNA ABK1_0052 PF00133 tRNA synthetases class I (I, L, M and V) ABK1_0053 PF06574 FAD synthetase ABK1_0053 PF01687 Riboflavin kinase ABK1_0055 PF01048 Phosphorylase superfamily ABK1_0056 PF00440 Bacterial regulatory proteins, tetR family ABK1_0056 PF08362 YcdC-like protein, C-terminal region ABK1_0057 PF00005 ABC transporter ABK1_0058 PF00528 Binding-protein-dependent transport system inner membrane component ABK1_0059 PF00296 Luciferase-like monooxygenase ABK1_0060 PF09084 NMT1/THI5 like ABK1_0061 PF09084 NMT1/THI5 like ABK1_0062 PF00583 Acetyltransferase (GNAT) family ABK1_0062 PF00696 Amino acid kinase family ABK1_0065 PF00106 short chain dehydrogenase ABK1_0066 PF13419 Haloacid dehalogenase-like hydrolase ABK1_0068 PF01323 DSBA-like thioredoxin domain ABK1_0069 PF08360 QacR-like protein, C-terminal region ABK1_0069 PF00440 Bacterial regulatory proteins, tetR family ABK1_0070 PF00440 Bacterial regulatory proteins, tetR family ABK1_0071 PF00175 Oxidoreductase NAD-binding domain ABK1_0072 PF00487 Fatty acid desaturase ABK1_0073 PF03725 3' exoribonuclease family, domain 2 ABK1_0073 PF01138 3' exoribonuclease family, domain 1 ABK1_0075 PF04185 Phosphoesterase family ABK1_0075 PF05506 Domain of unknown function (DUF756) ABK1_0077 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain ABK1_0077 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain ABK1_0078 PF01510 N-acetylmuramoyl-L-alanine amidase ABK1_0079 PF03023 Lipid II flippase MurJ ABK1_0080 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase ABK1_0080 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase ABK1_0081 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase ABK1_0081 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase ABK1_0082 PF02706 Chain length determinant protein ABK1_0082 PF13614 AAA domain ABK1_0082 PF13807 G-rich domain on putative tyrosine kinase ABK1_0083 PF01451 Low molecular weight phosphotyrosine protein phosphatase ABK1_0084 PF18412 Outer-membrane lipoprotein Wza C-terminal domain ABK1_0084 PF02563 Polysaccharide biosynthesis/export protein ABK1_0084 PF10531 SLBB domain ABK1_0085 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain ABK1_0085 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain ABK1_0085 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain ABK1_0086 PF02719 Polysaccharide biosynthesis protein ABK1_0087 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family ABK1_0088 PF02348 Cytidylyltransferase ABK1_0091 PF08666 SAF domain ABK1_0091 PF03102 NeuB family ABK1_0092 PF01943 Polysaccharide biosynthesis protein ABK1_0093 PF07922 Glycosyltransferase family 52 ABK1_0096 PF00535 Glycosyl transferase family 2 ABK1_0097 PF13737 Transposase DDE domain ABK1_0098 PF00535 Glycosyl transferase family 2 ABK1_0099 PF02397 Bacterial sugar transferase ABK1_0100 PF00483 Nucleotidyl transferase ABK1_0101 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain ABK1_0101 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain ABK1_0101 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain ABK1_0102 PF00342 Phosphoglucose isomerase ABK1_0103 PF16363 GDP-mannose 4,6 dehydratase ABK1_0104 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain ABK1_0104 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III ABK1_0104 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I ABK1_0104 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II ABK1_0105 PF02652 L-lactate permease ABK1_0106 PF07729 FCD domain ABK1_0106 PF00392 Bacterial regulatory proteins, gntR family ABK1_0107 PF01070 FMN-dependent dehydrogenase ABK1_0108 PF01565 FAD binding domain ABK1_0108 PF09330 D-lactate dehydrogenase, membrane binding ABK1_0109 PF00155 Aminotransferase class I and II ABK1_0111 PF00392 Bacterial regulatory proteins, gntR family ABK1_0111 PF07729 FCD domain ABK1_0113 PF00285 Citrate synthase, C-terminal domain ABK1_0114 PF00694 Aconitase C-terminal domain ABK1_0114 PF00330 Aconitase family (aconitate hydratase) ABK1_0117 PF00293 NUDIX domain ABK1_0120 PF00109 Beta-ketoacyl synthase, N-terminal domain ABK1_0120 PF02801 Beta-ketoacyl synthase, C-terminal domain ABK1_0123 PF00849 RNA pseudouridylate synthase ABK1_0126 PF07715 TonB-dependent Receptor Plug Domain ABK1_0126 PF00593 TonB dependent receptor ABK1_0128 PF01037 Lrp/AsnC ligand binding domain ABK1_0129 PF01266 FAD dependent oxidoreductase ABK1_0130 PF01168 Alanine racemase, N-terminal domain ABK1_0130 PF00842 Alanine racemase, C-terminal domain ABK1_0131 PF01042 Endoribonuclease L-PSP ABK1_0132 PF00324 Amino acid permease ABK1_0133 PF00324 Amino acid permease ABK1_0135 PF00171 Aldehyde dehydrogenase family ABK1_0136 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase ABK1_0136 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase ABK1_0137 PF13193 AMP-binding enzyme C-terminal domain ABK1_0137 PF00501 AMP-binding enzyme ABK1_0138 PF00441 Acyl-CoA dehydrogenase, C-terminal domain ABK1_0138 PF02770 Acyl-CoA dehydrogenase, middle domain ABK1_0138 PF02771 Acyl-CoA dehydrogenase, N-terminal domain ABK1_0139 PF00378 Enoyl-CoA hydratase/isomerase ABK1_0140 PF00378 Enoyl-CoA hydratase/isomerase ABK1_0141 PF00083 Sugar (and other) transporter ABK1_0141 PF07690 Major Facilitator Superfamily ABK1_0142 PF00765 Autoinducer synthase ABK1_0144 PF03472 Autoinducer binding domain ABK1_0144 PF00196 Bacterial regulatory proteins, luxR family ABK1_0145 PF13737 Transposase DDE domain ABK1_0146 PF00196 Bacterial regulatory proteins, luxR family ABK1_0146 PF03472 Autoinducer binding domain ABK1_0147 PF00501 AMP-binding enzyme ABK1_0148 PF02771 Acyl-CoA dehydrogenase, N-terminal domain ABK1_0148 PF02770 Acyl-CoA dehydrogenase, middle domain ABK1_0148 PF00441 Acyl-CoA dehydrogenase, C-terminal domain ABK1_0149 PF00975 Thioesterase domain ABK1_0149 PF00550 Phosphopantetheine attachment site ABK1_0149 PF14765 Polyketide synthase dehydratase ABK1_0149 PF02801 Beta-ketoacyl synthase, C-terminal domain ABK1_0149 PF00109 Beta-ketoacyl synthase, N-terminal domain ABK1_0149 PF16197 Ketoacyl-synthetase C-terminal extension ABK1_0149 PF08242 Methyltransferase domain ABK1_0150 PF00501 AMP-binding enzyme ABK1_0150 PF13193 AMP-binding enzyme C-terminal domain ABK1_0150 PF00668 Condensation domain ABK1_0150 PF00550 Phosphopantetheine attachment site ABK1_0150 PF00975 Thioesterase domain ABK1_0153 PF12697 Alpha/beta hydrolase family ABK1_0154 PF01648 4'-phosphopantetheinyl transferase superfamily ABK1_0155 PF01722 BolA-like protein ABK1_0157 PF13614 AAA domain ABK1_0160 PF09335 SNARE associated Golgi protein ABK1_0161 PF07681 DoxX ABK1_0162 PF04286 Protein of unknown function (DUF445) ABK1_0163 PF00117 Glutamine amidotransferase class-I ABK1_0163 PF02540 NAD synthase ABK1_0163 PF00958 GMP synthase C terminal domain ABK1_0164 PF13427 Domain of unknown function (DUF4111) ABK1_0164 PF01909 Nucleotidyltransferase domain ABK1_0165 PF03551 Transcriptional regulator PadR-like family ABK1_0167 PF02678 Pirin ABK1_0167 PF05726 Pirin C-terminal cupin domain ABK1_0171 PF00750 tRNA synthetases class I (R) ABK1_0171 PF03485 Arginyl tRNA synthetase N terminal domain ABK1_0171 PF05746 DALR anticodon binding domain ABK1_0172 PF03949 Malic enzyme, NAD binding domain ABK1_0172 PF00390 Malic enzyme, N-terminal domain ABK1_0174 PF04261 Dyp-type peroxidase family ABK1_0175 PF01810 LysE type translocator ABK1_0176 PF00950 ABC 3 transport family ABK1_0177 PF00005 ABC transporter ABK1_0181 PF00119 ATP synthase A chain ABK1_0182 PF00137 ATP synthase subunit C ABK1_0183 PF00430 ATP synthase B/B' CF(0) ABK1_0184 PF00213 ATP synthase delta (OSCP) subunit ABK1_0185 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain ABK1_0185 PF00306 ATP synthase alpha/beta chain, C terminal domain ABK1_0185 PF02874 ATP synthase alpha/beta family, beta-barrel domain ABK1_0186 PF00231 ATP synthase ABK1_0187 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain ABK1_0187 PF02874 ATP synthase alpha/beta family, beta-barrel domain ABK1_0188 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain ABK1_0190 PF00255 Glutathione peroxidase ABK1_0192 PF07690 Major Facilitator Superfamily ABK1_0193 PF00440 Bacterial regulatory proteins, tetR family ABK1_0194 PF00892 EamA-like transporter family ABK1_0195 PF01300 Telomere recombination ABK1_0196 PF17782 DprA winged helix domain ABK1_0196 PF02481 DNA recombination-mediator protein A ABK1_0198 PF01327 Polypeptide deformylase ABK1_0203 PF00440 Bacterial regulatory proteins, tetR family ABK1_0205 PF00291 Pyridoxal-phosphate dependent enzyme ABK1_0207 PF03358 NADPH-dependent FMN reductase ABK1_0211 PF11842 Domain of unknown function (DUF3362) ABK1_0211 PF04055 Radical SAM superfamily ABK1_0211 PF08497 Radical SAM N-terminal ABK1_0214 PF00817 impB/mucB/samB family ABK1_0214 PF11799 impB/mucB/samB family C-terminal domain ABK1_0214 PF11798 IMS family HHH motif ABK1_0216 PF07690 Major Facilitator Superfamily ABK1_0217 PF03641 Possible lysine decarboxylase ABK1_0219 PF03471 Transporter associated domain ABK1_0219 PF03741 Integral membrane protein TerC family ABK1_0220 PF02810 SEC-C motif ABK1_0221 PF03458 UPF0126 domain ABK1_0222 PF07690 Major Facilitator Superfamily ABK1_0223 PF00521 DNA gyrase/topoisomerase IV, subunit A ABK1_0223 PF03989 DNA gyrase C-terminal domain, beta-propeller ABK1_0224 PF00501 AMP-binding enzyme ABK1_0224 PF13193 AMP-binding enzyme C-terminal domain ABK1_0227 PF00719 Inorganic pyrophosphatase ABK1_0228 PF03573 outer membrane porin, OprD family ABK1_0230 PF00701 Dihydrodipicolinate synthetase family ABK1_0232 PF00155 Aminotransferase class I and II ABK1_0232 PF00392 Bacterial regulatory proteins, gntR family ABK1_0233 PF01078 Magnesium chelatase, subunit ChlI ABK1_0233 PF13335 Magnesium chelatase, subunit ChlI C-terminal ABK1_0235 PF00665 Integrase core domain ABK1_0239 PF00582 Universal stress protein family ABK1_0240 PF01740 STAS domain ABK1_0240 PF00916 Sulfate permease family ABK1_0246 PF00589 Phage integrase family ABK1_0246 PF02899 Phage integrase, N-terminal SAM-like domain ABK1_0251 PF00665 Integrase core domain ABK1_0255 PF00809 Pterin binding enzyme ABK1_0257 PF04655 Aminoglycoside/hydroxyurea antibiotic resistance kinase ABK1_0258 PF01636 Phosphotransferase enzyme family ABK1_0260 PF01609 Transposase DDE domain ABK1_0263 PF01609 Transposase DDE domain ABK1_0266 PF01636 Phosphotransferase enzyme family ABK1_0268 PF01078 Magnesium chelatase, subunit ChlI ABK1_0268 PF13335 Magnesium chelatase, subunit ChlI C-terminal ABK1_0270 PF00543 Nitrogen regulatory protein P-II ABK1_0271 PF00909 Ammonium Transporter Family ABK1_0272 PF03477 ATP cone domain ABK1_0273 PF01872 RibD C-terminal domain ABK1_0273 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region ABK1_0275 PF00677 Lumazine binding domain ABK1_0279 PF02789 Cytosol aminopeptidase family, N-terminal domain ABK1_0279 PF00883 Cytosol aminopeptidase family, catalytic domain ABK1_0281 PF03739 Lipopolysaccharide export system permease LptF/LptG ABK1_0282 PF01676 Metalloenzyme superfamily ABK1_0282 PF06415 BPG-independent PGAM N-terminus (iPGM_N) ABK1_0283 PF00595 PDZ domain ABK1_0283 PF03572 Peptidase family S41 ABK1_0284 PF02954 Bacterial regulatory protein, Fis family ABK1_0284 PF00158 Sigma-54 interaction domain ABK1_0284 PF00072 Response regulator receiver domain ABK1_0285 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ABK1_0285 PF00512 His Kinase A (phospho-acceptor) domain ABK1_0286 PF00196 Bacterial regulatory proteins, luxR family ABK1_0286 PF00072 Response regulator receiver domain ABK1_0287 PF00768 D-alanyl-D-alanine carboxypeptidase ABK1_0288 PF00291 Pyridoxal-phosphate dependent enzyme ABK1_0289 PF00742 Homoserine dehydrogenase ABK1_0289 PF01842 ACT domain ABK1_0289 PF03447 Homoserine dehydrogenase, NAD binding domain ABK1_0290 PF13098 Thioredoxin-like domain ABK1_0290 PF10411 Disulfide bond isomerase protein N-terminus ABK1_0291 PF02899 Phage integrase, N-terminal SAM-like domain ABK1_0291 PF00589 Phage integrase family ABK1_0293 PF07664 Ferrous iron transport protein B C terminus ABK1_0293 PF02421 Ferrous iron transport protein B ABK1_0293 PF07670 Nucleoside recognition ABK1_0295 PF02875 Mur ligase family, glutamate ligase domain ABK1_0295 PF08245 Mur ligase middle domain ABK1_0296 PF01098 Cell cycle protein ABK1_0297 PF00749 tRNA synthetases class I (E and Q), catalytic domain ABK1_0298 PF01258 Prokaryotic dksA/traR C4-type zinc finger ABK1_0299 PF00149 Calcineurin-like phosphoesterase ABK1_0300 PF00293 NUDIX domain ABK1_0301 PF01964 Radical SAM ThiC family ABK1_0301 PF13667 ThiC-associated domain ABK1_0304 PF00892 EamA-like transporter family ABK1_0305 PF02321 Outer membrane efflux protein ABK1_0306 PF01895 PhoU domain ABK1_0307 PF04362 Bacterial Fe(2+) trafficking ABK1_0308 PF00206 Lyase ABK1_0308 PF14698 Argininosuccinate lyase C-terminal ABK1_0309 PF06580 Histidine kinase ABK1_0309 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ABK1_0309 PF07694 5TMR of 5TMR-LYT ABK1_0310 PF00072 Response regulator receiver domain ABK1_0310 PF04397 LytTr DNA-binding domain ABK1_0311 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain ABK1_0311 PF03900 Porphobilinogen deaminase, C-terminal domain ABK1_0316 PF00816 H-NS histone family ABK1_0319 PF00263 Bacterial type II and III secretion system protein ABK1_0319 PF03958 Bacterial type II/III secretion system short domain ABK1_0320 PF12401 Protein of unknown function (DUF2662) ABK1_0320 PF00498 FHA domain ABK1_0321 PF13419 Haloacid dehalogenase-like hydrolase ABK1_0322 PF04715 Anthranilate synthase component I, N terminal region ABK1_0322 PF00425 chorismate binding enzyme ABK1_0323 PF00009 Elongation factor Tu GTP binding domain ABK1_0323 PF03143 Elongation factor Tu C-terminal domain ABK1_0323 PF03144 Elongation factor Tu domain 2 ABK1_0324 PF00584 SecE/Sec61-gamma subunits of protein translocation complex ABK1_0325 PF02357 Transcription termination factor nusG ABK1_0325 PF00467 KOW motif ABK1_0326 PF03946 Ribosomal protein L11, N-terminal domain ABK1_0326 PF00298 Ribosomal protein L11, RNA binding domain ABK1_0327 PF00687 Ribosomal protein L1p/L10e family ABK1_0328 PF00466 Ribosomal protein L10 ABK1_0329 PF00542 Ribosomal protein L7/L12 C-terminal domain ABK1_0329 PF16320 Ribosomal protein L7/L12 dimerisation domain ABK1_0330 PF00562 RNA polymerase Rpb2, domain 6 ABK1_0330 PF10385 RNA polymerase beta subunit external 1 domain ABK1_0330 PF04565 RNA polymerase Rpb2, domain 3 ABK1_0330 PF04563 RNA polymerase beta subunit ABK1_0330 PF04561 RNA polymerase Rpb2, domain 2 ABK1_0330 PF04560 RNA polymerase Rpb2, domain 7 ABK1_0331 PF05000 RNA polymerase Rpb1, domain 4 ABK1_0331 PF04998 RNA polymerase Rpb1, domain 5 ABK1_0331 PF00623 RNA polymerase Rpb1, domain 2 ABK1_0331 PF04983 RNA polymerase Rpb1, domain 3 ABK1_0331 PF04997 RNA polymerase Rpb1, domain 1 ABK1_0335 PF00561 alpha/beta hydrolase fold ABK1_0336 PF13726 Na+-H+ antiporter family ABK1_0336 PF03553 Na+/H+ antiporter family ABK1_0339 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ABK1_0339 PF00183 Hsp90 protein ABK1_0342 PF01323 DSBA-like thioredoxin domain ABK1_0344 PF00376 MerR family regulatory protein ABK1_0344 PF09278 MerR, DNA binding ABK1_0348 PF02803 Thiolase, C-terminal domain ABK1_0348 PF00108 Thiolase, N-terminal domain ABK1_0349 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain ABK1_0349 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain ABK1_0349 PF00378 Enoyl-CoA hydratase/isomerase ABK1_0353 PF02151 UvrB/uvrC motif ABK1_0353 PF08459 UvrC Helix-hairpin-helix N-terminal ABK1_0353 PF01541 GIY-YIG catalytic domain ABK1_0355 PF01066 CDP-alcohol phosphatidyltransferase ABK1_0356 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain ABK1_0356 PF12833 Helix-turn-helix domain ABK1_0356 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain ABK1_0356 PF02805 Metal binding domain of Ada ABK1_0361 PF13533 Biotin-lipoyl like ABK1_0362 PF03652 Holliday junction resolvase ABK1_0363 PF02622 Uncharacterized ACR, COG1678 ABK1_0364 PF02463 RecF/RecN/SMC N terminal domain ABK1_0366 PF06865 Pyrimidine/purine nucleoside phosphorylase ABK1_0367 PF08032 RNA 2'-O ribose methyltransferase substrate binding ABK1_0367 PF00588 SpoU rRNA Methylase family ABK1_0369 PF01121 Dephospho-CoA kinase ABK1_0370 PF06750 Bacterial Peptidase A24 N-terminal domain ABK1_0370 PF01478 Type IV leader peptidase family ABK1_0371 PF00482 Type II secretion system (T2SS), protein F ABK1_0372 PF00437 Type II/IV secretion system protein ABK1_0372 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain ABK1_0373 PF00121 Triosephosphate isomerase ABK1_0374 PF03840 Preprotein translocase SecG subunit ABK1_0375 PF17384 RimP C-terminal SH3 domain ABK1_0375 PF02576 RimP N-terminal domain ABK1_0376 PF13184 NusA-like KH domain ABK1_0376 PF08529 NusA N-terminal domain ABK1_0376 PF00575 S1 RNA binding domain ABK1_0377 PF04760 Translation initiation factor IF-2, N-terminal region ABK1_0377 PF11987 Translation-initiation factor 2 ABK1_0377 PF08364 Bacterial translation initiation factor IF-2 associated region ABK1_0377 PF00009 Elongation factor Tu GTP binding domain ABK1_0378 PF02033 Ribosome-binding factor A ABK1_0380 PF04066 Multiple resistance and pH regulation protein F (MrpF / PhaF) ABK1_0382 PF00361 Proton-conducting membrane transporter ABK1_0383 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L ABK1_0384 PF13244 Domain of unknown function (DUF4040) ABK1_0384 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus ABK1_0384 PF04039 Domain related to MnhB subunit of Na+/H+ antiporter ABK1_0384 PF00361 Proton-conducting membrane transporter ABK1_0387 PF01502 Phosphoribosyl-AMP cyclohydrolase ABK1_0388 PF01494 FAD binding domain ABK1_0389 PF03109 ABC1 family ABK1_0391 PF01209 ubiE/COQ5 methyltransferase family ABK1_0393 PF03976 Polyphosphate kinase 2 (PPK2) ABK1_0395 PF17946 RecC C-terminal domain ABK1_0396 PF12705 PD-(D/E)XK nuclease superfamily ABK1_0396 PF00580 UvrD/REP helicase N-terminal domain ABK1_0396 PF13361 UvrD-like helicase C-terminal domain ABK1_0397 PF13538 UvrD-like helicase C-terminal domain ABK1_0399 PF00312 Ribosomal protein S15 ABK1_0400 PF01138 3' exoribonuclease family, domain 1 ABK1_0400 PF00013 KH domain ABK1_0400 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain ABK1_0400 PF03725 3' exoribonuclease family, domain 2 ABK1_0400 PF00575 S1 RNA binding domain ABK1_0401 PF01544 CorA-like Mg2+ transporter protein ABK1_0403 PF01556 DnaJ C terminal domain ABK1_0403 PF00226 DnaJ domain ABK1_0405 PF01430 Hsp33 protein ABK1_0406 PF00999 Sodium/hydrogen exchanger family ABK1_0406 PF02254 TrkA-N domain ABK1_0407 PF18074 Primosomal protein N C-terminal domain ABK1_0407 PF17764 3′ DNA-binding domain (3′BD) ABK1_0407 PF18319 PriA DNA helicase Cys-rich region (CRR) domain ABK1_0407 PF00270 DEAD/DEAH box helicase ABK1_0407 PF00271 Helicase conserved C-terminal domain ABK1_0408 PF00482 Type II secretion system (T2SS), protein F ABK1_0409 PF07963 Prokaryotic N-terminal methylation motif ABK1_0409 PF08334 Type II secretion system (T2SS), protein G ABK1_0411 PF13737 Transposase DDE domain ABK1_0413 PF01588 Putative tRNA binding domain ABK1_0414 PF00795 Carbon-nitrogen hydrolase ABK1_0415 PF03471 Transporter associated domain ABK1_0415 PF00571 CBS domain ABK1_0416 PF01206 Sulfurtransferase TusA ABK1_0419 PF01177 Asp/Glu/Hydantoin racemase ABK1_0421 PF00762 Ferrochelatase ABK1_0422 PF00753 Metallo-beta-lactamase superfamily ABK1_0423 PF03884 DNA gyrase inhibitor YacG ABK1_0427 PF02537 CrcB-like protein, Camphor Resistance (CrcB) ABK1_0429 PF01197 Ribosomal protein L31 ABK1_0430 PF03109 ABC1 family ABK1_0431 PF02771 Acyl-CoA dehydrogenase, N-terminal domain ABK1_0431 PF08028 Acyl-CoA dehydrogenase, C-terminal domain ABK1_0432 PF08028 Acyl-CoA dehydrogenase, C-terminal domain ABK1_0432 PF02770 Acyl-CoA dehydrogenase, middle domain ABK1_0432 PF02771 Acyl-CoA dehydrogenase, N-terminal domain ABK1_0433 PF01554 MatE ABK1_0435 PF04055 Radical SAM superfamily ABK1_0435 PF06969 HemN C-terminal domain ABK1_0436 PF00106 short chain dehydrogenase ABK1_0437 PF03466 LysR substrate binding domain ABK1_0437 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ABK1_0438 PF13193 AMP-binding enzyme C-terminal domain ABK1_0438 PF00501 AMP-binding enzyme ABK1_0439 PF10150 Ribonuclease E/G family ABK1_0439 PF12111 Polyribonucleotide phosphorylase C terminal ABK1_0439 PF00575 S1 RNA binding domain ABK1_0441 PF01479 S4 domain ABK1_0441 PF00849 RNA pseudouridylate synthase ABK1_0442 PF13419 Haloacid dehalogenase-like hydrolase ABK1_0443 PF08279 HTH domain ABK1_0443 PF13280 WYL domain ABK1_0444 PF13737 Transposase DDE domain ABK1_0445 PF02798 Glutathione S-transferase, N-terminal domain ABK1_0447 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ABK1_0447 PF03466 LysR substrate binding domain ABK1_0448 PF12706 Beta-lactamase superfamily domain ABK1_0449 PF00141 Peroxidase ABK1_0450 PF01590 GAF domain ABK1_0450 PF05524 PEP-utilising enzyme, N-terminal ABK1_0450 PF00391 PEP-utilising enzyme, mobile domain ABK1_0450 PF02896 PEP-utilising enzyme, TIM barrel domain ABK1_0451 PF00293 NUDIX domain ABK1_0455 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ABK1_0455 PF03466 LysR substrate binding domain ABK1_0457 PF00330 Aconitase family (aconitate hydratase) ABK1_0458 PF00694 Aconitase C-terminal domain ABK1_0460 PF00180 Isocitrate/isopropylmalate dehydrogenase ABK1_0463 PF01176 Translation initiation factor 1A / IF-1 ABK1_0465 PF01416 tRNA pseudouridine synthase ABK1_0469 PF02774 Semialdehyde dehydrogenase, dimerisation domain ABK1_0469 PF01118 Semialdehyde dehydrogenase, NAD binding domain ABK1_0471 PF00375 Sodium:dicarboxylate symporter family ABK1_0473 PF03279 Bacterial lipid A biosynthesis acyltransferase ABK1_0474 PF01810 LysE type translocator ABK1_0477 PF00107 Zinc-binding dehydrogenase ABK1_0477 PF08240 Alcohol dehydrogenase GroES-like domain ABK1_0478 PF01638 HxlR-like helix-turn-helix ABK1_0480 PF01396 Topoisomerase DNA binding C4 zinc finger ABK1_0480 PF01131 DNA topoisomerase ABK1_0480 PF08272 Topoisomerase I zinc-ribbon-like ABK1_0480 PF01751 Toprim domain ABK1_0483 PF13361 UvrD-like helicase C-terminal domain ABK1_0483 PF00580 UvrD/REP helicase N-terminal domain ABK1_0484 PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) ABK1_0488 PF02254 TrkA-N domain ABK1_0488 PF00999 Sodium/hydrogen exchanger family ABK1_0489 PF00471 Ribosomal protein L33 ABK1_0490 PF00830 Ribosomal L28 family ABK1_0491 PF00171 Aldehyde dehydrogenase family ABK1_0493 PF01842 ACT domain ABK1_0493 PF00551 Formyl transferase ABK1_0495 PF01618 MotA/TolQ/ExbB proton channel family ABK1_0497 PF01625 Peptide methionine sulfoxide reductase ABK1_0499 PF00186 Dihydrofolate reductase ABK1_0500 PF00303 Thymidylate synthase ABK1_0503 PF01790 Prolipoprotein diacylglyceryl transferase ABK1_0507 PF00902 Sec-independent protein translocase protein (TatC) ABK1_0508 PF02416 mttA/Hcf106 family ABK1_0509 PF02416 mttA/Hcf106 family ABK1_0511 PF01725 Ham1 family ABK1_0513 PF00561 alpha/beta hydrolase fold ABK1_0513 PF07021 Methionine biosynthesis protein MetW ABK1_0514 PF00561 alpha/beta hydrolase fold ABK1_0515 PF08502 LeuA allosteric (dimerisation) domain ABK1_0515 PF00682 HMGL-like ABK1_0516 PF13640 2OG-Fe(II) oxygenase superfamily ABK1_0516 PF18331 PKHD-type hydroxylase C-terminal domain ABK1_0517 PF07715 TonB-dependent Receptor Plug Domain ABK1_0517 PF00593 TonB dependent receptor ABK1_0518 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase ABK1_0518 PF05697 Bacterial trigger factor protein (TF) ABK1_0518 PF05698 Bacterial trigger factor protein (TF) C-terminus ABK1_0519 PF00574 Clp protease ABK1_0520 PF07724 AAA domain (Cdc48 subfamily) ABK1_0520 PF10431 C-terminal, D2-small domain, of ClpB protein ABK1_0520 PF06689 ClpX C4-type zinc finger ABK1_0523 PF05683 Fumarase C-terminus ABK1_0523 PF05681 Fumarate hydratase (Fumerase) ABK1_0524 PF01515 Phosphate acetyl/butaryl transferase ABK1_0524 PF07085 DRTGG domain ABK1_0525 PF00871 Acetokinase family ABK1_0526 PF00920 Dehydratase family ABK1_0527 PF01081 KDPG and KHG aldolase ABK1_0528 PF02447 GntP family permease ABK1_0529 PF01202 Shikimate kinase ABK1_0530 PF00171 Aldehyde dehydrogenase family ABK1_0531 PF00171 Aldehyde dehydrogenase family ABK1_0532 PF00561 alpha/beta hydrolase fold ABK1_0534 PF00933 Glycosyl hydrolase family 3 N terminal domain ABK1_0535 PF00595 PDZ domain ABK1_0535 PF03572 Peptidase family S41 ABK1_0535 PF17804 Tail specific protease N-terminal domain ABK1_0535 PF11818 C-terminal domain of tail specific protease (DUF3340) ABK1_0536 PF00534 Glycosyl transferases group 1 ABK1_0536 PF13439 Glycosyltransferase Family 4 ABK1_0537 PF01569 PAP2 superfamily ABK1_0538 PF04384 Iron-sulphur cluster assembly ABK1_0539 PF00334 Nucleoside diphosphate kinase ABK1_0540 PF04055 Radical SAM superfamily ABK1_0542 PF13464 Domain of unknown function (DUF4115) ABK1_0543 PF04551 GcpE protein ABK1_0544 PF03129 Anticodon binding domain ABK1_0544 PF13393 Histidyl-tRNA synthetase ABK1_0546 PF13360 PQQ-like domain ABK1_0547 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal ABK1_0547 PF01926 50S ribosome-binding GTPase ABK1_0552 PF00550 Phosphopantetheine attachment site ABK1_0553 PF00550 Phosphopantetheine attachment site ABK1_0555 PF00501 AMP-binding enzyme ABK1_0555 PF13193 AMP-binding enzyme C-terminal domain ABK1_0559 PF00221 Aromatic amino acid lyase ABK1_0563 PF04820 Tryptophan halogenase ABK1_0565 PF02801 Beta-ketoacyl synthase, C-terminal domain ABK1_0565 PF00109 Beta-ketoacyl synthase, N-terminal domain ABK1_0568 PF00109 Beta-ketoacyl synthase, N-terminal domain ABK1_0568 PF02801 Beta-ketoacyl synthase, C-terminal domain ABK1_0571 PF02556 Preprotein translocase subunit SecB ABK1_0572 PF00462 Glutaredoxin ABK1_0574 PF03193 RsgA GTPase ABK1_0575 PF00929 Exonuclease ABK1_0578 PF02321 Outer membrane efflux protein ABK1_0579 PF12704 MacB-like periplasmic core domain ABK1_0579 PF00005 ABC transporter ABK1_0579 PF02687 FtsX-like permease family ABK1_0580 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion ABK1_0583 PF13603 Leucyl-tRNA synthetase, Domain 2 ABK1_0583 PF00133 tRNA synthetases class I (I, L, M and V) ABK1_0583 PF09334 tRNA synthetases class I (M) ABK1_0583 PF08264 Anticodon-binding domain of tRNA ABK1_0585 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain ABK1_0585 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain ABK1_0585 PF00205 Thiamine pyrophosphate enzyme, central domain ABK1_0586 PF10369 Small subunit of acetolactate synthase ABK1_0587 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain ABK1_0587 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain ABK1_0589 PF00563 EAL domain ABK1_0589 PF00990 Diguanylate cyclase, GGDEF domain ABK1_0589 PF03707 Bacterial signalling protein N terminal repeat ABK1_0593 PF00009 Elongation factor Tu GTP binding domain ABK1_0593 PF16658 Class II release factor RF3, C-terminal domain ABK1_0593 PF03144 Elongation factor Tu domain 2 ABK1_0596 PF01026 TatD related DNase ABK1_0597 PF00694 Aconitase C-terminal domain ABK1_0597 PF00330 Aconitase family (aconitate hydratase) ABK1_0599 PF00899 ThiF family ABK1_0601 PF03466 LysR substrate binding domain ABK1_0601 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ABK1_0603 PF01207 Dihydrouridine synthase (Dus) ABK1_0604 PF07690 Major Facilitator Superfamily ABK1_0606 PF00892 EamA-like transporter family ABK1_0607 PF01262 Alanine dehydrogenase/PNT, C-terminal domain ABK1_0607 PF05222 Alanine dehydrogenase/PNT, N-terminal domain ABK1_0608 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch ABK1_0609 PF02233 NAD(P) transhydrogenase beta subunit ABK1_0610 PF00106 short chain dehydrogenase ABK1_0612 PF01261 Xylose isomerase-like TIM barrel ABK1_0613 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase ABK1_0613 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase ABK1_0614 PF00378 Enoyl-CoA hydratase/isomerase ABK1_0615 PF00072 Response regulator receiver domain ABK1_0615 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ABK1_0615 PF00512 His Kinase A (phospho-acceptor) domain ABK1_0615 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) ABK1_0615 PF00672 HAMP domain ABK1_0615 PF01627 Hpt domain ABK1_0616 PF00291 Pyridoxal-phosphate dependent enzyme ABK1_0618 PF05958 tRNA (Uracil-5-)-methyltransferase ABK1_0619 PF04607 Region found in RelA / SpoT proteins ABK1_0619 PF13291 ACT domain ABK1_0619 PF02824 TGS domain ABK1_0621 PF03819 MazG nucleotide pyrophosphohydrolase domain ABK1_0623 PF12627 Probable RNA and SrmB- binding site of polymerase A ABK1_0623 PF12626 Polymerase A arginine-rich C-terminus ABK1_0623 PF01743 Poly A polymerase head domain ABK1_0624 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) ABK1_0625 PF02548 Ketopantoate hydroxymethyltransferase ABK1_0626 PF02569 Pantoate-beta-alanine ligase ABK1_0627 PF03668 P-loop ATPase protein family ABK1_0628 PF00381 PTS HPr component phosphorylation site ABK1_0629 PF04751 Protein of unknown function (DUF615) ABK1_0630 PF00501 AMP-binding enzyme ABK1_0630 PF13193 AMP-binding enzyme C-terminal domain ABK1_0631 PF02824 TGS domain ABK1_0631 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) ABK1_0631 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain ABK1_0631 PF03129 Anticodon binding domain ABK1_0632 PF05198 Translation initiation factor IF-3, N-terminal domain ABK1_0632 PF00707 Translation initiation factor IF-3, C-terminal domain ABK1_0633 PF02798 Glutathione S-transferase, N-terminal domain ABK1_0633 PF00043 Glutathione S-transferase, C-terminal domain ABK1_0634 PF09335 SNARE associated Golgi protein ABK1_0635 PF07690 Major Facilitator Superfamily ABK1_0636 PF01632 Ribosomal protein L35 ABK1_0637 PF00453 Ribosomal protein L20 ABK1_0641 PF01409 tRNA synthetases class II core domain (F) ABK1_0641 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain ABK1_0642 PF01588 Putative tRNA binding domain ABK1_0642 PF03147 Ferredoxin-fold anticodon binding domain ABK1_0642 PF03484 tRNA synthetase B5 domain ABK1_0642 PF03483 B3/4 domain ABK1_0642 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain ABK1_0643 PF00216 Bacterial DNA-binding protein ABK1_0645 PF07497 Rho termination factor, RNA-binding domain ABK1_0645 PF07498 Rho termination factor, N-terminal domain ABK1_0645 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain ABK1_0646 PF00085 Thioredoxin ABK1_0647 PF02541 Ppx/GppA phosphatase family ABK1_0648 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit ABK1_0649 PF11734 TilS substrate C-terminal domain ABK1_0649 PF01171 PP-loop family ABK1_0649 PF09179 TilS substrate binding domain ABK1_0650 PF14748 Pyrroline-5-carboxylate reductase dimerisation ABK1_0650 PF03807 NADP oxidoreductase coenzyme F420-dependent ABK1_0651 PF02325 YGGT family ABK1_0652 PF01612 3'-5' exonuclease ABK1_0652 PF01367 5'-3' exonuclease, C-terminal SAM fold ABK1_0652 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain ABK1_0652 PF00476 DNA polymerase family A ABK1_0656 PF00437 Type II/IV secretion system protein ABK1_0657 PF02566 OsmC-like protein ABK1_0658 PF01047 MarR family ABK1_0660 PF00795 Carbon-nitrogen hydrolase ABK1_0664 PF04552 Sigma-54, DNA binding domain ABK1_0664 PF04963 Sigma-54 factor, core binding domain ABK1_0664 PF00309 Sigma-54 factor, Activator interacting domain (AID) ABK1_0665 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein ABK1_0666 PF01722 BolA-like protein ABK1_0667 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) ABK1_0668 PF01634 ATP phosphoribosyltransferase ABK1_0669 PF00815 Histidinol dehydrogenase ABK1_0670 PF00155 Aminotransferase class I and II ABK1_0671 PF04715 Anthranilate synthase component I, N terminal region ABK1_0671 PF00425 chorismate binding enzyme ABK1_0679 PF00293 NUDIX domain ABK1_0680 PF00132 Bacterial transferase hexapeptide (six repeats) ABK1_0681 PF00814 Glycoprotease family ABK1_0682 PF04445 Putative SAM-dependent methyltransferase ABK1_0684 PF00756 Putative esterase ABK1_0686 PF00834 Ribulose-phosphate 3 epimerase family ABK1_0689 PF07732 Multicopper oxidase ABK1_0689 PF00394 Multicopper oxidase ABK1_0689 PF07731 Multicopper oxidase ABK1_0690 PF05275 Copper resistance protein B precursor (CopB) ABK1_0692 PF00893 Small Multidrug Resistance protein ABK1_0693 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain ABK1_0693 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain ABK1_0694 PF01960 ArgJ family ABK1_0695 PF02445 Quinolinate synthetase A protein ABK1_0696 PF00962 Adenosine/AMP deaminase ABK1_0697 PF00107 Zinc-binding dehydrogenase ABK1_0697 PF08240 Alcohol dehydrogenase GroES-like domain ABK1_0698 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ABK1_0698 PF03466 LysR substrate binding domain ABK1_0699 PF02771 Acyl-CoA dehydrogenase, N-terminal domain ABK1_0699 PF02770 Acyl-CoA dehydrogenase, middle domain ABK1_0699 PF00441 Acyl-CoA dehydrogenase, C-terminal domain ABK1_0700 PF07690 Major Facilitator Superfamily ABK1_0701 PF02515 CoA-transferase family III ABK1_0703 PF14537 Cytochrome c3 ABK1_0703 PF00890 FAD binding domain ABK1_0704 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ABK1_0704 PF03466 LysR substrate binding domain ABK1_0706 PF07690 Major Facilitator Superfamily ABK1_0707 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ABK1_0707 PF03466 LysR substrate binding domain ABK1_0709 PF07687 Peptidase dimerisation domain ABK1_0709 PF01546 Peptidase family M20/M25/M40 ABK1_0710 PF12833 Helix-turn-helix domain ABK1_0710 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term ABK1_0712 PF01810 LysE type translocator ABK1_0713 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ABK1_0713 PF03466 LysR substrate binding domain ABK1_0715 PF08267 Cobalamin-independent synthase, N-terminal domain ABK1_0715 PF01717 Cobalamin-independent synthase, Catalytic domain ABK1_0716 PF01613 Flavin reductase like domain ABK1_0720 PF02567 Phenazine biosynthesis-like protein ABK1_0723 PF13737 Transposase DDE domain ABK1_0725 PF13360 PQQ-like domain ABK1_0725 PF01011 PQQ enzyme repeat ABK1_0738 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ABK1_0738 PF13756 Stimulus-sensing domain ABK1_0738 PF00512 His Kinase A (phospho-acceptor) domain ABK1_0738 PF00672 HAMP domain ABK1_0738 PF13755 Sensor N-terminal transmembrane domain ABK1_0741 PF00268 Ribonucleotide reductase, small chain ABK1_0743 PF00317 Ribonucleotide reductase, all-alpha domain ABK1_0743 PF02867 Ribonucleotide reductase, barrel domain ABK1_0743 PF03477 ATP cone domain ABK1_0744 PF00072 Response regulator receiver domain ABK1_0744 PF00486 Transcriptional regulatory protein, C terminal ABK1_0745 PF00672 HAMP domain ABK1_0745 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ABK1_0745 PF00512 His Kinase A (phospho-acceptor) domain ABK1_0747 PF00990 Diguanylate cyclase, GGDEF domain ABK1_0747 PF17151 Periplasmic sensor domain ABK1_0748 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 ABK1_0749 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit ABK1_0750 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit ABK1_0750 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit ABK1_0752 PF10531 SLBB domain ABK1_0752 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region ABK1_0752 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit ABK1_0753 PF04879 Molybdopterin oxidoreductase Fe4S4 domain ABK1_0753 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region ABK1_0753 PF00384 Molybdopterin oxidoreductase ABK1_0754 PF00146 NADH dehydrogenase ABK1_0755 PF12838 4Fe-4S dicluster domain ABK1_0756 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 ABK1_0757 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L ABK1_0758 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus ABK1_0758 PF00361 Proton-conducting membrane transporter ABK1_0759 PF00361 Proton-conducting membrane transporter ABK1_0760 PF00361 Proton-conducting membrane transporter ABK1_0762 PF00313 'Cold-shock' DNA-binding domain ABK1_0763 PF03466 LysR substrate binding domain ABK1_0763 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ABK1_0764 PF00175 Oxidoreductase NAD-binding domain ABK1_0764 PF00970 Oxidoreductase FAD-binding domain ABK1_0767 PF05552 Conserved TM helix ABK1_0770 PF00291 Pyridoxal-phosphate dependent enzyme ABK1_0771 PF13533 Biotin-lipoyl like ABK1_0776 PF01588 Putative tRNA binding domain ABK1_0776 PF09334 tRNA synthetases class I (M) ABK1_0778 PF10609 NUBPL iron-transfer P-loop NTPase ABK1_0779 PF01048 Phosphorylase superfamily ABK1_0782 PF00692 dUTPase ABK1_0788 PF01207 Dihydrouridine synthase (Dus) ABK1_0790 PF02978 Signal peptide binding domain ABK1_0790 PF02881 SRP54-type protein, helical bundle domain ABK1_0790 PF00448 SRP54-type protein, GTPase domain ABK1_0791 PF03309 Type III pantothenate kinase ABK1_0793 PF01925 Sulfite exporter TauE/SafE ABK1_0795 PF02463 RecF/RecN/SMC N terminal domain ABK1_0795 PF06470 SMC proteins Flexible Hinge Domain ABK1_0797 PF03119 NAD-dependent DNA ligase C4 zinc finger domain ABK1_0797 PF12826 Helix-hairpin-helix motif ABK1_0797 PF03120 NAD-dependent DNA ligase OB-fold domain ABK1_0797 PF01653 NAD-dependent DNA ligase adenylation domain ABK1_0797 PF00533 BRCA1 C Terminus (BRCT) domain ABK1_0798 PF00210 Ferritin-like domain ABK1_0799 PF07690 Major Facilitator Superfamily ABK1_0800 PF00982 Glycosyltransferase family 20 ABK1_0801 PF02358 Trehalose-phosphatase ABK1_0802 PF08241 Methyltransferase domain ABK1_0802 PF12697 Alpha/beta hydrolase family ABK1_0803 PF04055 Radical SAM superfamily ABK1_0803 PF06968 Biotin and Thiamin Synthesis associated domain ABK1_0803 PF00202 Aminotransferase class-III ABK1_0804 PF00155 Aminotransferase class I and II ABK1_0807 PF01479 S4 domain ABK1_0807 PF00849 RNA pseudouridylate synthase ABK1_0808 PF04079 Segregation and condensation complex subunit ScpB ABK1_0809 PF02616 Segregation and condensation protein ScpA ABK1_0810 PF01300 Telomere recombination ABK1_0811 PF04315 Elongation factor P hydroxylase ABK1_0812 PF02620 Large ribosomal RNA subunit accumulation protein YceD ABK1_0813 PF01783 Ribosomal L32p protein family ABK1_0814 PF00698 Acyl transferase domain ABK1_0816 PF00550 Phosphopantetheine attachment site ABK1_0817 PF04972 BON domain ABK1_0817 PF01476 LysM domain ABK1_0818 PF02581 Thiamine monophosphate synthase ABK1_0818 PF03070 TENA/THI-4/PQQC family ABK1_0818 PF08543 Phosphomethylpyrimidine kinase ABK1_0820 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase ABK1_0823 PF02261 Aspartate decarboxylase ABK1_0824 PF01195 Peptidyl-tRNA hydrolase ABK1_0825 PF01386 Ribosomal L25p family ABK1_0826 PF14572 Phosphoribosyl synthetase-associated domain ABK1_0826 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase ABK1_0827 PF03550 Outer membrane lipoprotein LolB ABK1_0829 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain ABK1_0829 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain ABK1_0829 PF01488 Shikimate / quinate 5-dehydrogenase ABK1_0830 PF08278 DNA primase DnaG DnaB-binding ABK1_0830 PF10410 DnaB-helicase binding domain of primase ABK1_0830 PF01807 CHC2 zinc finger ABK1_0830 PF08275 DNA primase catalytic core, N-terminal domain ABK1_0831 PF13525 Outer membrane lipoprotein ABK1_0832 PF01479 S4 domain ABK1_0832 PF00849 RNA pseudouridylate synthase ABK1_0834 PF03358 NADPH-dependent FMN reductase ABK1_0835 PF01668 SmpB protein ABK1_0836 PF01467 Cytidylyltransferase-like ABK1_0837 PF00037 4Fe-4S binding domain ABK1_0839 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ABK1_0839 PF03466 LysR substrate binding domain ABK1_0840 PF00180 Isocitrate/isopropylmalate dehydrogenase ABK1_0841 PF02028 BCCT, betaine/carnitine/choline family transporter ABK1_0842 PF07859 alpha/beta hydrolase fold ABK1_0843 PF00848 Ring hydroxylating alpha subunit (catalytic domain) ABK1_0843 PF00355 Rieske [2Fe-2S] domain ABK1_0844 PF00171 Aldehyde dehydrogenase family ABK1_0845 PF00970 Oxidoreductase FAD-binding domain ABK1_0845 PF00111 2Fe-2S iron-sulfur cluster binding domain ABK1_0845 PF00175 Oxidoreductase NAD-binding domain ABK1_0847 PF02540 NAD synthase ABK1_0847 PF00795 Carbon-nitrogen hydrolase ABK1_0849 PF05726 Pirin C-terminal cupin domain ABK1_0849 PF02678 Pirin ABK1_0851 PF00109 Beta-ketoacyl synthase, N-terminal domain ABK1_0851 PF02801 Beta-ketoacyl synthase, C-terminal domain ABK1_0853 PF00164 Ribosomal protein S12/S23 ABK1_0854 PF00177 Ribosomal protein S7p/S5e ABK1_0855 PF14492 Elongation Factor G, domain II ABK1_0855 PF03144 Elongation factor Tu domain 2 ABK1_0855 PF00009 Elongation factor Tu GTP binding domain ABK1_0855 PF00679 Elongation factor G C-terminus ABK1_0855 PF03764 Elongation factor G, domain IV ABK1_0856 PF00009 Elongation factor Tu GTP binding domain ABK1_0856 PF03143 Elongation factor Tu C-terminal domain ABK1_0856 PF03144 Elongation factor Tu domain 2 ABK1_0859 PF00583 Acetyltransferase (GNAT) family ABK1_0860 PF04376 Arginine-tRNA-protein transferase, N terminus ABK1_0860 PF04377 Arginine-tRNA-protein transferase, C terminus ABK1_0861 PF03588 Leucyl/phenylalanyl-tRNA protein transferase ABK1_0862 PF07992 Pyridine nucleotide-disulphide oxidoreductase ABK1_0863 PF01580 FtsK/SpoIIIE family ABK1_0863 PF09397 Ftsk gamma domain ABK1_0863 PF17854 FtsK alpha domain ABK1_0863 PF13491 4TM region of DNA translocase FtsK/SpoIIIE ABK1_0864 PF01810 LysE type translocator ABK1_0867 PF03776 Septum formation topological specificity factor MinE ABK1_0868 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain ABK1_0869 PF03775 Septum formation inhibitor MinC, C-terminal domain ABK1_0871 PF01553 Acyltransferase ABK1_0872 PF13488 Glycine zipper ABK1_0872 PF00691 OmpA family ABK1_0873 PF13361 UvrD-like helicase C-terminal domain ABK1_0873 PF00580 UvrD/REP helicase N-terminal domain ABK1_0874 PF00692 dUTPase ABK1_0875 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain ABK1_0875 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III ABK1_0875 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II ABK1_0875 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I ABK1_0876 PF00696 Amino acid kinase family ABK1_0878 PF13230 Glutamine amidotransferases class-II ABK1_0879 PF01814 Hemerythrin HHE cation binding domain ABK1_0881 PF03658 RnfH family Ubiquitin ABK1_0882 PF04355 SmpA / OmlA family ABK1_0883 PF01475 Ferric uptake regulator family ABK1_0884 PF00437 Type II/IV secretion system protein ABK1_0885 PF00437 Type II/IV secretion system protein ABK1_0886 PF01168 Alanine racemase, N-terminal domain ABK1_0888 PF00149 Calcineurin-like phosphoesterase ABK1_0888 PF12320 Type 5 capsule protein repressor C-terminal domain ABK1_0892 PF01370 NAD dependent epimerase/dehydratase family ABK1_0892 PF08338 Domain of unknown function (DUF1731) ABK1_0893 PF01266 FAD dependent oxidoreductase ABK1_0894 PF00490 Delta-aminolevulinic acid dehydratase ABK1_0895 PF03061 Thioesterase superfamily ABK1_0896 PF13533 Biotin-lipoyl like ABK1_0897 PF07690 Major Facilitator Superfamily ABK1_0903 PF00083 Sugar (and other) transporter ABK1_0904 PF00701 Dihydrodipicolinate synthetase family ABK1_0909 PF13520 Amino acid permease ABK1_0910 PF02574 Homocysteine S-methyltransferase ABK1_0912 PF06039 Malate:quinone oxidoreductase (Mqo) ABK1_0913 PF05199 GMC oxidoreductase ABK1_0913 PF00732 GMC oxidoreductase ABK1_0914 PF00171 Aldehyde dehydrogenase family ABK1_0915 PF00440 Bacterial regulatory proteins, tetR family ABK1_0915 PF13977 BetI-type transcriptional repressor, C-terminal ABK1_0916 PF02028 BCCT, betaine/carnitine/choline family transporter ABK1_0917 PF02028 BCCT, betaine/carnitine/choline family transporter ABK1_0919 PF03061 Thioesterase superfamily ABK1_0921 PF07683 Cobalamin synthesis protein cobW C-terminal domain ABK1_0921 PF02492 CobW/HypB/UreG, nucleotide-binding domain ABK1_0922 PF00375 Sodium:dicarboxylate symporter family ABK1_0923 PF07152 YaeQ protein ABK1_0924 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase ABK1_0925 PF14883 Hypothetical glycosyl hydrolase family 13 ABK1_0925 PF01522 Polysaccharide deacetylase ABK1_0926 PF00535 Glycosyl transferase family 2 ABK1_0928 PF00378 Enoyl-CoA hydratase/isomerase ABK1_0931 PF09339 IclR helix-turn-helix domain ABK1_0931 PF01614 Bacterial transcriptional regulator ABK1_0933 PF00355 Rieske [2Fe-2S] domain ABK1_0935 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily ABK1_0936 PF14759 Reductase C-terminal ABK1_0936 PF07992 Pyridine nucleotide-disulphide oxidoreductase ABK1_0937 PF07690 Major Facilitator Superfamily ABK1_0939 PF12697 Alpha/beta hydrolase family ABK1_0941 PF03447 Homoserine dehydrogenase, NAD binding domain ABK1_0941 PF01958 Domain of unknown function DUF108 ABK1_0942 PF00171 Aldehyde dehydrogenase family ABK1_0943 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain ABK1_0943 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain ABK1_0943 PF00205 Thiamine pyrophosphate enzyme, central domain ABK1_0945 PF07690 Major Facilitator Superfamily ABK1_0947 PF01327 Polypeptide deformylase ABK1_0948 PF04960 Glutaminase ABK1_0949 PF07690 Major Facilitator Superfamily ABK1_0950 PF01263 Aldose 1-epimerase ABK1_0952 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ABK1_0952 PF03466 LysR substrate binding domain ABK1_0954 PF07690 Major Facilitator Superfamily ABK1_0955 PF00456 Transketolase, thiamine diphosphate binding domain ABK1_0956 PF02780 Transketolase, C-terminal domain ABK1_0956 PF02779 Transketolase, pyrimidine binding domain ABK1_0957 PF02574 Homocysteine S-methyltransferase ABK1_0957 PF02310 B12 binding domain ABK1_0957 PF00809 Pterin binding enzyme ABK1_0957 PF02965 Vitamin B12 dependent methionine synthase, activation domain ABK1_0957 PF02607 B12 binding domain ABK1_0959 PF01384 Phosphate transporter family ABK1_0960 PF00291 Pyridoxal-phosphate dependent enzyme ABK1_0963 PF03781 Sulfatase-modifying factor enzyme 1 ABK1_0964 PF00884 Sulfatase ABK1_0966 PF01521 Iron-sulphur cluster biosynthesis ABK1_0966 PF01106 NifU-like domain ABK1_0967 PF07715 TonB-dependent Receptor Plug Domain ABK1_0967 PF00593 TonB dependent receptor ABK1_0969 PF00561 alpha/beta hydrolase fold ABK1_0970 PF00484 Carbonic anhydrase ABK1_0971 PF13472 GDSL-like Lipase/Acylhydrolase family ABK1_0972 PF00005 ABC transporter ABK1_0974 PF01694 Rhomboid family ABK1_0975 PF00912 Transglycosylase ABK1_0976 PF13090 Polyphosphate kinase C-terminal domain 2 ABK1_0976 PF17941 Polyphosphate kinase C-terminal domain 1 ABK1_0976 PF13089 Polyphosphate kinase N-terminal domain ABK1_0976 PF02503 Polyphosphate kinase middle domain ABK1_0978 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ABK1_0978 PF03466 LysR substrate binding domain ABK1_0979 PF00561 alpha/beta hydrolase fold ABK1_0980 PF07992 Pyridine nucleotide-disulphide oxidoreductase ABK1_0980 PF18113 Rubredoxin binding C-terminal domain ABK1_0981 PF00301 Rubredoxin ABK1_0984 PF01336 OB-fold nucleic acid binding domain ABK1_0984 PF00152 tRNA synthetases class II (D, K and N) ABK1_0985 PF14052 Capsule assembly protein Wzi ABK1_0986 PF01507 Phosphoadenosine phosphosulfate reductase family ABK1_0987 PF00009 Elongation factor Tu GTP binding domain ABK1_0990 PF03600 Citrate transporter ABK1_0992 PF01595 Cyclin M transmembrane N-terminal domain ABK1_0992 PF03471 Transporter associated domain ABK1_0992 PF00571 CBS domain ABK1_0993 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ABK1_0993 PF03466 LysR substrate binding domain ABK1_0994 PF00463 Isocitrate lyase family ABK1_0998 PF01774 UreD urease accessory protein ABK1_0999 PF00547 Urease, gamma subunit ABK1_1000 PF00699 Urease beta subunit ABK1_1001 PF01979 Amidohydrolase family ABK1_1001 PF00449 Urease alpha-subunit, N-terminal domain ABK1_1002 PF05194 UreE urease accessory protein, C-terminal domain ABK1_1002 PF02814 UreE urease accessory protein, N-terminal domain ABK1_1003 PF01730 UreF ABK1_1004 PF02492 CobW/HypB/UreG, nucleotide-binding domain ABK1_1007 PF03717 Penicillin-binding Protein dimerisation domain ABK1_1007 PF00905 Penicillin binding protein transpeptidase domain ABK1_1010 PF05191 Adenylate kinase, active site lid ABK1_1011 PF00730 HhH-GPD superfamily base excision DNA repair protein ABK1_1011 PF10576 Iron-sulfur binding domain of endonuclease III ABK1_1011 PF00633 Helix-hairpin-helix motif ABK1_1012 PF04060 Putative Fe-S cluster ABK1_1013 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase ABK1_1013 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain ABK1_1015 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase ABK1_1016 PF02590 Predicted SPOUT methyltransferase ABK1_1017 PF05362 Lon protease (S16) C-terminal proteolytic domain ABK1_1017 PF02190 ATP-dependent protease La (LON) substrate-binding domain ABK1_1017 PF00004 ATPase family associated with various cellular activities (AAA) ABK1_1018 PF03895 YadA-like membrane anchor domain ABK1_1018 PF13018 Extended Signal Peptide of Type V secretion system ABK1_1018 PF05658 Head domain of trimeric autotransporter adhesin ABK1_1018 PF05662 Coiled stalk of trimeric autotransporter adhesin ABK1_1020 PF01812 5-formyltetrahydrofolate cyclo-ligase family ABK1_1081 PF01551 Peptidase family M23 ABK1_1081 PF08525 Opacity-associated protein A N-terminal motif ABK1_1081 PF01476 LysM domain ABK1_1092 PF00884 Sulfatase ABK1_1092 PF08019 Phosphoethanolamine transferase EptA/EptB ABK1_1098 PF05195 Aminopeptidase P, N-terminal domain ABK1_1098 PF00557 Metallopeptidase family M24 ABK1_1099 PF01494 FAD binding domain ABK1_1100 PF01494 FAD binding domain ABK1_1102 PF13411 MerR HTH family regulatory protein ABK1_1105 PF01810 LysE type translocator ABK1_1106 PF03466 LysR substrate binding domain ABK1_1106 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ABK1_1108 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases ABK1_1109 PF02021 Uncharacterised protein family UPF0102 ABK1_1110 PF04972 BON domain ABK1_1112 PF09297 NADH pyrophosphatase zinc ribbon domain ABK1_1112 PF00293 NUDIX domain ABK1_1114 PF00929 Exonuclease ABK1_1115 PF01476 LysM domain ABK1_1115 PF01464 Transglycosylase SLT domain ABK1_1115 PF01476 LysM domain ABK1_1115 PF01464 Transglycosylase SLT domain ABK1_1116 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle ABK1_1117 PF00528 Binding-protein-dependent transport system inner membrane component ABK1_1118 PF12911 N-terminal TM domain of oligopeptide transport permease C ABK1_1118 PF00528 Binding-protein-dependent transport system inner membrane component ABK1_1119 PF00005 ABC transporter ABK1_1119 PF08352 Oligopeptide/dipeptide transporter, C-terminal region ABK1_1120 PF07992 Pyridine nucleotide-disulphide oxidoreductase ABK1_1120 PF00724 NADH:flavin oxidoreductase / NADH oxidase family ABK1_1121 PF00593 TonB dependent receptor ABK1_1121 PF07715 TonB-dependent Receptor Plug Domain ABK1_1122 PF00929 Exonuclease ABK1_1123 PF01979 Amidohydrolase family ABK1_1124 PF00360 Phytochrome region ABK1_1124 PF00990 Diguanylate cyclase, GGDEF domain ABK1_1124 PF01590 GAF domain ABK1_1124 PF00563 EAL domain ABK1_1125 PF00764 Arginosuccinate synthase ABK1_1126 PF00724 NADH:flavin oxidoreductase / NADH oxidase family ABK1_1126 PF07992 Pyridine nucleotide-disulphide oxidoreductase ABK1_1128 PF05987 Bacterial protein of unknown function (DUF898) ABK1_1129 PF03180 NLPA lipoprotein ABK1_1133 PF04717 Type VI secretion system, phage-baseplate injector ABK1_1133 PF16671 Actin cross-linking domain ABK1_1136 PF13610 DDE domain ABK1_1138 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain ABK1_1138 PF07992 Pyridine nucleotide-disulphide oxidoreductase ABK1_1138 PF00403 Heavy-metal-associated domain ABK1_1139 PF00665 Integrase core domain ABK1_1140 PF01695 IstB-like ATP binding protein ABK1_1142 PF00809 Pterin binding enzyme ABK1_1143 PF13427 Domain of unknown function (DUF4111) ABK1_1143 PF01909 Nucleotidyltransferase domain ABK1_1144 PF00589 Phage integrase family ABK1_1144 PF13495 Phage integrase, N-terminal SAM-like domain ABK1_1145 PF00583 Acetyltransferase (GNAT) family ABK1_1146 PF13427 Domain of unknown function (DUF4111) ABK1_1146 PF01909 Nucleotidyltransferase domain ABK1_1147 PF13610 DDE domain ABK1_1149 PF13610 DDE domain ABK1_1150 PF01526 Tn3 transposase DDE domain ABK1_1150 PF13700 Domain of unknown function (DUF4158) ABK1_1152 PF02219 Methylenetetrahydrofolate reductase ABK1_1153 PF00670 S-adenosyl-L-homocysteine hydrolase, NAD binding domain ABK1_1153 PF05221 S-adenosyl-L-homocysteine hydrolase ABK1_1156 PF00441 Acyl-CoA dehydrogenase, C-terminal domain ABK1_1156 PF02771 Acyl-CoA dehydrogenase, N-terminal domain ABK1_1156 PF09317 Domain of unknown function (DUF1974) ABK1_1157 PF04055 Radical SAM superfamily ABK1_1158 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain ABK1_1158 PF07992 Pyridine nucleotide-disulphide oxidoreductase ABK1_1160 PF07690 Major Facilitator Superfamily ABK1_1162 PF00557 Metallopeptidase family M24 ABK1_1163 PF00318 Ribosomal protein S2 ABK1_1164 PF00889 Elongation factor TS ABK1_1166 PF12833 Helix-turn-helix domain ABK1_1170 PF05036 Sporulation related domain ABK1_1170 PF03330 Lytic transglycolase ABK1_1171 PF13406 Transglycosylase SLT domain ABK1_1172 PF01098 Cell cycle protein ABK1_1174 PF14489 QueF-like protein ABK1_1174 PF14819 Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term ABK1_1175 PF01061 ABC-2 type transporter ABK1_1176 PF00005 ABC transporter ABK1_1181 PF00464 Serine hydroxymethyltransferase ABK1_1182 PF02321 Outer membrane efflux protein ABK1_1183 PF00873 AcrB/AcrD/AcrF family ABK1_1184 PF13533 Biotin-lipoyl like ABK1_1185 PF03466 LysR substrate binding domain ABK1_1185 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ABK1_1186 PF00497 Bacterial extracellular solute-binding proteins, family 3 ABK1_1187 PF00528 Binding-protein-dependent transport system inner membrane component ABK1_1188 PF00528 Binding-protein-dependent transport system inner membrane component ABK1_1189 PF00005 ABC transporter ABK1_1190 PF00893 Small Multidrug Resistance protein ABK1_1191 PF00037 4Fe-4S binding domain ABK1_1193 PF00392 Bacterial regulatory proteins, gntR family ABK1_1193 PF00155 Aminotransferase class I and II ABK1_1194 PF02567 Phenazine biosynthesis-like protein ABK1_1195 PF00175 Oxidoreductase NAD-binding domain ABK1_1195 PF00970 Oxidoreductase FAD-binding domain ABK1_1196 PF18389 TrmO C-terminal domain ABK1_1196 PF01980 tRNA-methyltransferase O ABK1_1198 PF00437 Type II/IV secretion system protein ABK1_1200 PF00486 Transcriptional regulatory protein, C terminal ABK1_1200 PF00072 Response regulator receiver domain ABK1_1201 PF08521 Two-component sensor kinase N-terminal ABK1_1201 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ABK1_1201 PF00512 His Kinase A (phospho-acceptor) domain ABK1_1203 PF00293 NUDIX domain ABK1_1205 PF00905 Penicillin binding protein transpeptidase domain ABK1_1205 PF00912 Transglycosylase ABK1_1205 PF14814 Bifunctional transglycosylase second domain ABK1_1206 PF01513 ATP-NAD kinase ABK1_1207 PF07023 Protein of unknown function (DUF1315) ABK1_1208 PF00591 Glycosyl transferase family, a/b domain ABK1_1208 PF02885 Glycosyl transferase family, helical bundle domain ABK1_1209 PF00375 Sodium:dicarboxylate symporter family ABK1_1210 PF00441 Acyl-CoA dehydrogenase, C-terminal domain ABK1_1210 PF02770 Acyl-CoA dehydrogenase, middle domain ABK1_1210 PF02771 Acyl-CoA dehydrogenase, N-terminal domain ABK1_1211 PF00756 Putative esterase ABK1_1212 PF00800 Prephenate dehydratase ABK1_1212 PF01842 ACT domain ABK1_1212 PF01817 Chorismate mutase type II ABK1_1213 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) ABK1_1215 PF01546 Peptidase family M20/M25/M40 ABK1_1215 PF07687 Peptidase dimerisation domain ABK1_1216 PF12706 Beta-lactamase superfamily domain ABK1_1218 PF03883 Peroxide stress protein YaaA ABK1_1220 PF05690 Thiazole biosynthesis protein ThiG ABK1_1222 PF04241 Protein of unknown function (DUF423) ABK1_1223 PF04545 Sigma-70, region 4 ABK1_1223 PF04542 Sigma-70 region 2 ABK1_1223 PF00140 Sigma-70 factor, region 1.2 ABK1_1225 PF00313 'Cold-shock' DNA-binding domain ABK1_1226 PF00270 DEAD/DEAH box helicase ABK1_1226 PF00271 Helicase conserved C-terminal domain ABK1_1228 PF00881 Nitroreductase family ABK1_1229 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus ABK1_1229 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus ABK1_1233 PF01180 Dihydroorotate dehydrogenase ABK1_1235 PF00156 Phosphoribosyl transferase domain ABK1_1238 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain ABK1_1238 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain ABK1_1239 PF01435 Peptidase family M48 ABK1_1240 PF09424 Yqey-like protein ABK1_1241 PF01165 Ribosomal protein S21 ABK1_1242 PF00814 Glycoprotease family ABK1_1246 PF00069 Protein kinase domain ABK1_1247 PF03466 LysR substrate binding domain ABK1_1247 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ABK1_1248 PF00202 Aminotransferase class-III ABK1_1249 PF00171 Aldehyde dehydrogenase family ABK1_1250 PF00324 Amino acid permease ABK1_1252 PF13737 Transposase DDE domain ABK1_1257 PF04076 Bacterial OB fold (BOF) protein ABK1_1262 PF00561 alpha/beta hydrolase fold ABK1_1263 PF03616 Sodium/glutamate symporter ABK1_1265 PF07729 FCD domain ABK1_1265 PF00392 Bacterial regulatory proteins, gntR family ABK1_1268 PF13737 Transposase DDE domain ABK1_1278 PF00083 Sugar (and other) transporter ABK1_1278 PF08946 Osmosensory transporter coiled coil ABK1_1281 PF00155 Aminotransferase class I and II ABK1_1282 PF02080 TrkA-C domain ABK1_1282 PF06826 Predicted Permease Membrane Region ABK1_1284 PF04403 Paraquat-inducible protein A ABK1_1285 PF02470 MlaD protein ABK1_1287 PF01177 Asp/Glu/Hydantoin racemase ABK1_1288 PF00892 EamA-like transporter family ABK1_1289 PF07995 Glucose / Sorbosone dehydrogenase ABK1_1293 PF00375 Sodium:dicarboxylate symporter family ABK1_1295 PF16123 Hydroxyacylglutathione hydrolase C-terminus ABK1_1295 PF00753 Metallo-beta-lactamase superfamily ABK1_1296 PF00528 Binding-protein-dependent transport system inner membrane component ABK1_1297 PF00005 ABC transporter ABK1_1297 PF09383 NIL domain ABK1_1298 PF03180 NLPA lipoprotein ABK1_1299 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain ABK1_1299 PF02843 Phosphoribosylglycinamide synthetase, C domain ABK1_1299 PF02844 Phosphoribosylglycinamide synthetase, N domain ABK1_1300 PF02142 MGS-like domain ABK1_1300 PF01808 AICARFT/IMPCHase bienzyme ABK1_1301 PF02954 Bacterial regulatory protein, Fis family ABK1_1305 PF01134 Glucose inhibited division protein A ABK1_1305 PF13932 GidA associated domain ABK1_1308 PF14403 Circularly permuted ATP-grasp type 2 ABK1_1310 PF08379 Bacterial transglutaminase-like N-terminal region ABK1_1310 PF01841 Transglutaminase-like superfamily ABK1_1312 PF00842 Alanine racemase, C-terminal domain ABK1_1312 PF01168 Alanine racemase, N-terminal domain ABK1_1313 PF00772 DnaB-like helicase N terminal domain ABK1_1313 PF03796 DnaB-like helicase C terminal domain ABK1_1314 PF01281 Ribosomal protein L9, N-terminal domain ABK1_1314 PF03948 Ribosomal protein L9, C-terminal domain ABK1_1315 PF01084 Ribosomal protein S18 ABK1_1316 PF01250 Ribosomal protein S6 ABK1_1317 PF01040 UbiA prenyltransferase family ABK1_1318 PF03626 Prokaryotic Cytochrome C oxidase subunit IV ABK1_1319 PF00510 Cytochrome c oxidase subunit III ABK1_1320 PF00115 Cytochrome C and Quinol oxidase polypeptide I ABK1_1321 PF00116 Cytochrome C oxidase subunit II, periplasmic domain ABK1_1321 PF06481 COX Aromatic Rich Motif ABK1_1323 PF02896 PEP-utilising enzyme, TIM barrel domain ABK1_1323 PF00391 PEP-utilising enzyme, mobile domain ABK1_1323 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain ABK1_1324 PF03618 Kinase/pyrophosphorylase ABK1_1326 PF01522 Polysaccharide deacetylase ABK1_1326 PF14883 Hypothetical glycosyl hydrolase family 13 ABK1_1327 PF00535 Glycosyl transferase family 2 ABK1_1328 PF13994 PgaD-like protein ABK1_1330 PF00296 Luciferase-like monooxygenase ABK1_1333 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ABK1_1333 PF03466 LysR substrate binding domain ABK1_1335 PF00472 RF-1 domain ABK1_1335 PF03462 PCRF domain ABK1_1336 PF17827 PrmC N-terminal domain ABK1_1336 PF13847 Methyltransferase domain ABK1_1337 PF00528 Binding-protein-dependent transport system inner membrane component ABK1_1338 PF09084 NMT1/THI5 like ABK1_1339 PF12833 Helix-turn-helix domain ABK1_1340 PF00106 short chain dehydrogenase ABK1_1341 PF02771 Acyl-CoA dehydrogenase, N-terminal domain ABK1_1341 PF00441 Acyl-CoA dehydrogenase, C-terminal domain ABK1_1341 PF02770 Acyl-CoA dehydrogenase, middle domain ABK1_1342 PF13193 AMP-binding enzyme C-terminal domain ABK1_1342 PF00501 AMP-binding enzyme ABK1_1343 PF01613 Flavin reductase like domain ABK1_1344 PF00899 ThiF family ABK1_1345 PF03109 ABC1 family ABK1_1348 PF03814 Potassium-transporting ATPase A subunit ABK1_1350 PF02669 K+-transporting ATPase, c chain ABK1_1351 PF13493 Domain of unknown function (DUF4118) ABK1_1351 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ABK1_1351 PF00512 His Kinase A (phospho-acceptor) domain ABK1_1351 PF02702 Osmosensitive K+ channel His kinase sensor domain ABK1_1352 PF00072 Response regulator receiver domain ABK1_1352 PF00486 Transcriptional regulatory protein, C terminal ABK1_1353 PF00120 Glutamine synthetase, catalytic domain ABK1_1360 PF00216 Bacterial DNA-binding protein ABK1_1377 PF11985 Protein of unknown function (DUF3486) ABK1_1378 PF03237 Terminase-like family ABK1_1381 PF06074 Protein of unknown function (DUF935) ABK1_1382 PF04233 Phage Mu protein F like protein ABK1_1383 PF05069 Phage virion morphogenesis family ABK1_1386 PF10124 Mu-like prophage major head subunit gpT ABK1_1405 PF03232 Ubiquinone biosynthesis protein COQ7 ABK1_1406 PF07690 Major Facilitator Superfamily ABK1_1407 PF01103 Surface antigen ABK1_1407 PF07244 Surface antigen variable number repeat ABK1_1407 PF17243 POTRA domain TamA domain 1 ABK1_1410 PF06434 Aconitate hydratase 2 N-terminus ABK1_1410 PF00330 Aconitase family (aconitate hydratase) ABK1_1410 PF11791 Aconitate B N-terminal domain ABK1_1412 PF00520 Ion transport protein ABK1_1412 PF00027 Cyclic nucleotide-binding domain ABK1_1413 PF07690 Major Facilitator Superfamily ABK1_1416 PF03466 LysR substrate binding domain ABK1_1416 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ABK1_1417 PF04284 Protein of unknown function (DUF441) ABK1_1419 PF00849 RNA pseudouridylate synthase ABK1_1419 PF01479 S4 domain ABK1_1422 PF01479 S4 domain ABK1_1422 PF00849 RNA pseudouridylate synthase ABK1_1423 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE ABK1_1424 PF01119 DNA mismatch repair protein, C-terminal domain ABK1_1424 PF08676 MutL C terminal dimerisation domain ABK1_1426 PF17209 Hfq protein ABK1_1428 PF00881 Nitroreductase family ABK1_1429 PF00149 Calcineurin-like phosphoesterase ABK1_1430 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD ABK1_1431 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain ABK1_1431 PF00749 tRNA synthetases class I (E and Q), catalytic domain ABK1_1432 PF00117 Glutamine amidotransferase class-I ABK1_1432 PF02540 NAD synthase ABK1_1432 PF00958 GMP synthase C terminal domain ABK1_1433 PF05985 Ethanolamine ammonia-lyase light chain (EutC) ABK1_1434 PF06751 Ethanolamine ammonia lyase large subunit (EutB) ABK1_1435 PF13520 Amino acid permease ABK1_1436 PF00171 Aldehyde dehydrogenase family ABK1_1439 PF00465 Iron-containing alcohol dehydrogenase ABK1_1440 PF14493 Helix-turn-helix domain ABK1_1440 PF05970 PIF1-like helicase ABK1_1442 PF06445 GyrI-like small molecule binding domain ABK1_1443 PF02110 Hydroxyethylthiazole kinase family ABK1_1446 PF17432 Domain of unknown function (DUF3458_C) ARM repeats ABK1_1446 PF01433 Peptidase family M1 domain ABK1_1446 PF11940 Domain of unknown function (DUF3458) Ig-like fold ABK1_1448 PF00106 short chain dehydrogenase ABK1_1450 PF01817 Chorismate mutase type II ABK1_1451 PF01037 Lrp/AsnC ligand binding domain ABK1_1453 PF00440 Bacterial regulatory proteins, tetR family ABK1_1454 PF07715 TonB-dependent Receptor Plug Domain ABK1_1454 PF00593 TonB dependent receptor ABK1_1456 PF00924 Mechanosensitive ion channel ABK1_1461 PF07715 TonB-dependent Receptor Plug Domain ABK1_1461 PF00593 TonB dependent receptor ABK1_1466 PF00005 ABC transporter ABK1_1466 PF12848 ABC transporter ABK1_1467 PF00582 Universal stress protein family ABK1_1471 PF00690 Cation transporter/ATPase, N-terminus ABK1_1471 PF00689 Cation transporting ATPase, C-terminus ABK1_1472 PF02308 MgtC family ABK1_1473 PF03594 Benzoate membrane transport protein ABK1_1474 PF01037 Lrp/AsnC ligand binding domain ABK1_1475 PF01810 LysE type translocator ABK1_1477 PF03466 LysR substrate binding domain ABK1_1477 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ABK1_1479 PF00108 Thiolase, N-terminal domain ABK1_1479 PF02803 Thiolase, C-terminal domain ABK1_1484 PF07690 Major Facilitator Superfamily ABK1_1485 PF12170 DNA polymerase III tau subunit V interacting with alpha ABK1_1485 PF12169 DNA polymerase III subunits gamma and tau domain III ABK1_1485 PF12168 DNA polymerase III subunits tau domain IV DnaB-binding ABK1_1487 PF05506 Domain of unknown function (DUF756) ABK1_1487 PF04185 Phosphoesterase family ABK1_1488 PF03061 Thioesterase superfamily ABK1_1489 PF00465 Iron-containing alcohol dehydrogenase ABK1_1491 PF01451 Low molecular weight phosphotyrosine protein phosphatase ABK1_1492 PF01565 FAD binding domain ABK1_1492 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain ABK1_1495 PF01645 Conserved region in glutamate synthase ABK1_1499 PF13737 Transposase DDE domain ABK1_1554 PF15919 HicB_like antitoxin of bacterial toxin-antitoxin system ABK1_1559 PF01551 Peptidase family M23 ABK1_1559 PF08525 Opacity-associated protein A N-terminal motif ABK1_1559 PF01476 LysM domain ABK1_1571 PF00589 Phage integrase family ABK1_1571 PF13356 Arm DNA-binding domain ABK1_1573 PF00854 POT family ABK1_1575 PF04345 Chorismate lyase ABK1_1576 PF01040 UbiA prenyltransferase family ABK1_1580 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain ABK1_1580 PF02777 Iron/manganese superoxide dismutases, C-terminal domain ABK1_1581 PF01784 NIF3 (NGG1p interacting factor 3) ABK1_1582 PF13180 PDZ domain ABK1_1583 PF01743 Poly A polymerase head domain ABK1_1583 PF12627 Probable RNA and SrmB- binding site of polymerase A ABK1_1584 PF00390 Malic enzyme, N-terminal domain ABK1_1584 PF03949 Malic enzyme, NAD binding domain ABK1_1584 PF01515 Phosphate acetyl/butaryl transferase ABK1_1585 PF00990 Diguanylate cyclase, GGDEF domain ABK1_1585 PF03707 Bacterial signalling protein N terminal repeat ABK1_1585 PF00563 EAL domain ABK1_1586 PF04452 RNA methyltransferase ABK1_1587 PF02219 Methylenetetrahydrofolate reductase ABK1_1588 PF13610 DDE domain ABK1_1589 PF00583 Acetyltransferase (GNAT) family ABK1_1591 PF13610 DDE domain ABK1_1592 PF00743 Flavin-binding monooxygenase-like ABK1_1593 PF00106 short chain dehydrogenase ABK1_1595 PF00440 Bacterial regulatory proteins, tetR family ABK1_1595 PF17932 Tetracyclin repressor-like, C-terminal domain ABK1_1596 PF17954 Quercetinase C-terminal cupin domain ABK1_1596 PF02678 Pirin ABK1_1598 PF00106 short chain dehydrogenase ABK1_1599 PF00743 Flavin-binding monooxygenase-like ABK1_1600 PF13737 Transposase DDE domain ABK1_1602 PF00860 Permease family ABK1_1603 PF00962 Adenosine/AMP deaminase ABK1_1604 PF01292 Prokaryotic cytochrome b561 ABK1_1606 PF01351 Ribonuclease HII ABK1_1607 PF02599 Global regulator protein family ABK1_1608 PF00696 Amino acid kinase family ABK1_1608 PF13840 ACT domain ABK1_1608 PF01842 ACT domain ABK1_1609 PF02272 DHHA1 domain ABK1_1609 PF01411 tRNA synthetases class II (A) ABK1_1609 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain ABK1_1610 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain ABK1_1610 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain ABK1_1611 PF13393 Histidyl-tRNA synthetase ABK1_1612 PF00709 Adenylosuccinate synthetase ABK1_1615 PF00248 Aldo/keto reductase family ABK1_1616 PF13545 Crp-like helix-turn-helix domain ABK1_1616 PF00027 Cyclic nucleotide-binding domain ABK1_1617 PF02566 OsmC-like protein ABK1_1620 PF07724 AAA domain (Cdc48 subfamily) ABK1_1620 PF17871 AAA lid domain ABK1_1620 PF02861 Clp amino terminal domain, pathogenicity island component ABK1_1620 PF00004 ATPase family associated with various cellular activities (AAA) ABK1_1620 PF10431 C-terminal, D2-small domain, of ClpB protein ABK1_1623 PF02926 THUMP domain ABK1_1623 PF10672 S-adenosylmethionine-dependent methyltransferase ABK1_1623 PF01170 Putative RNA methylase family UPF0020 ABK1_1625 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain ABK1_1625 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain ABK1_1626 PF01979 Amidohydrolase family ABK1_1627 PF13488 Glycine zipper ABK1_1627 PF00691 OmpA family ABK1_1629 PF00043 Glutathione S-transferase, C-terminal domain ABK1_1629 PF13417 Glutathione S-transferase, N-terminal domain ABK1_1630 PF02390 Putative methyltransferase ABK1_1632 PF00043 Glutathione S-transferase, C-terminal domain ABK1_1632 PF02798 Glutathione S-transferase, N-terminal domain ABK1_1634 PF07992 Pyridine nucleotide-disulphide oxidoreductase ABK1_1634 PF13192 Thioredoxin domain ABK1_1638 PF00578 AhpC/TSA family ABK1_1638 PF10417 C-terminal domain of 1-Cys peroxiredoxin ABK1_1639 PF04408 Helicase associated domain (HA2) ABK1_1639 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold ABK1_1639 PF00271 Helicase conserved C-terminal domain ABK1_1639 PF11898 Domain of unknown function (DUF3418) ABK1_1639 PF00270 DEAD/DEAH box helicase ABK1_1640 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal ABK1_1640 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III ABK1_1642 PF07690 Major Facilitator Superfamily ABK1_1643 PF03594 Benzoate membrane transport protein ABK1_1644 PF00106 short chain dehydrogenase ABK1_1645 PF00970 Oxidoreductase FAD-binding domain ABK1_1645 PF00111 2Fe-2S iron-sulfur cluster binding domain ABK1_1645 PF00175 Oxidoreductase NAD-binding domain ABK1_1646 PF00866 Ring hydroxylating beta subunit ABK1_1647 PF00355 Rieske [2Fe-2S] domain ABK1_1647 PF00848 Ring hydroxylating alpha subunit (catalytic domain) ABK1_1648 PF03466 LysR substrate binding domain ABK1_1648 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ABK1_1649 PF00403 Heavy-metal-associated domain ABK1_1650 PF00403 Heavy-metal-associated domain ABK1_1651 PF09278 MerR, DNA binding ABK1_1651 PF00376 MerR family regulatory protein ABK1_1658 PF13742 OB-fold nucleic acid binding domain ABK1_1658 PF02601 Exonuclease VII, large subunit ABK1_1663 PF01810 LysE type translocator ABK1_1664 PF00313 'Cold-shock' DNA-binding domain ABK1_1665 PF03807 NADP oxidoreductase coenzyme F420-dependent ABK1_1665 PF14748 Pyrroline-5-carboxylate reductase dimerisation ABK1_1672 PF07690 Major Facilitator Superfamily ABK1_1673 PF01638 HxlR-like helix-turn-helix ABK1_1678 PF01406 tRNA synthetases class I (C) catalytic domain ABK1_1678 PF09190 DALR domain ABK1_1679 PF00571 CBS domain ABK1_1679 PF01380 SIS domain ABK1_1682 PF03968 OstA-like protein ABK1_1683 PF12399 Branched-chain amino acid ATP-binding cassette transporter ABK1_1683 PF00005 ABC transporter ABK1_1684 PF02321 Outer membrane efflux protein ABK1_1685 PF00005 ABC transporter ABK1_1685 PF00664 ABC transporter transmembrane region ABK1_1685 PF03412 Peptidase C39 family ABK1_1687 PF01205 Uncharacterized protein family UPF0029 ABK1_1688 PF00132 Bacterial transferase hexapeptide (six repeats) ABK1_1690 PF01596 O-methyltransferase ABK1_1692 PF11953 Domain of unknown function (DUF3470) ABK1_1692 PF00037 4Fe-4S binding domain ABK1_1694 PF05192 MutS domain III ABK1_1694 PF05188 MutS domain II ABK1_1694 PF05190 MutS family domain IV ABK1_1694 PF01624 MutS domain I ABK1_1694 PF00488 MutS domain V ABK1_1696 PF01037 Lrp/AsnC ligand binding domain ABK1_1697 PF00892 EamA-like transporter family ABK1_1698 PF00990 Diguanylate cyclase, GGDEF domain ABK1_1698 PF03707 Bacterial signalling protein N terminal repeat ABK1_1698 PF00563 EAL domain ABK1_1699 PF03279 Bacterial lipid A biosynthesis acyltransferase ABK1_1701 PF07690 Major Facilitator Superfamily ABK1_1705 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain ABK1_1705 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain ABK1_1708 PF13419 Haloacid dehalogenase-like hydrolase ABK1_1710 PF04717 Type VI secretion system, phage-baseplate injector ABK1_1710 PF16671 Actin cross-linking domain ABK1_1711 PF03527 RHS protein ABK1_1711 PF05593 RHS Repeat ABK1_1711 PF14220 Domain of unknown function (DUF4329) ABK1_1714 PF03466 LysR substrate binding domain ABK1_1714 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ABK1_1715 PF01566 Natural resistance-associated macrophage protein ABK1_1716 PF03746 LamB/YcsF family ABK1_1717 PF07286 Protein of unknown function (DUF1445) ABK1_1719 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain ABK1_1719 PF00364 Biotin-requiring enzyme ABK1_1719 PF02785 Biotin carboxylase C-terminal domain ABK1_1719 PF00289 Biotin carboxylase, N-terminal domain ABK1_1720 PF00654 Voltage gated chloride channel ABK1_1723 PF00440 Bacterial regulatory proteins, tetR family ABK1_1725 PF00107 Zinc-binding dehydrogenase ABK1_1725 PF08240 Alcohol dehydrogenase GroES-like domain ABK1_1725 PF13823 Alcohol dehydrogenase GroES-associated ABK1_1726 PF13823 Alcohol dehydrogenase GroES-associated ABK1_1726 PF00107 Zinc-binding dehydrogenase ABK1_1726 PF08240 Alcohol dehydrogenase GroES-like domain ABK1_1729 PF00289 Biotin carboxylase, N-terminal domain ABK1_1729 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain ABK1_1729 PF02785 Biotin carboxylase C-terminal domain ABK1_1730 PF02525 Flavodoxin-like fold ABK1_1731 PF01638 HxlR-like helix-turn-helix ABK1_1735 PF01402 Ribbon-helix-helix protein, copG family ABK1_1735 PF08753 NikR C terminal nickel binding domain ABK1_1736 PF01425 Amidase ABK1_1737 PF00497 Bacterial extracellular solute-binding proteins, family 3 ABK1_1738 PF00005 ABC transporter ABK1_1750 PF13737 Transposase DDE domain ABK1_1753 PF00691 OmpA family ABK1_1753 PF01389 OmpA-like transmembrane domain ABK1_1755 PF00004 ATPase family associated with various cellular activities (AAA) ABK1_1755 PF10431 C-terminal, D2-small domain, of ClpB protein ABK1_1755 PF17871 AAA lid domain ABK1_1755 PF07724 AAA domain (Cdc48 subfamily) ABK1_1761 PF03466 LysR substrate binding domain ABK1_1761 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ABK1_1763 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region ABK1_1764 PF07690 Major Facilitator Superfamily ABK1_1767 PF02677 Epoxyqueuosine reductase QueH ABK1_1768 PF13737 Transposase DDE domain ABK1_1769 PF00376 MerR family regulatory protein ABK1_1769 PF09278 MerR, DNA binding ABK1_1771 PF00701 Dihydrodipicolinate synthetase family ABK1_1773 PF00392 Bacterial regulatory proteins, gntR family ABK1_1774 PF05544 Proline racemase ABK1_1775 PF01266 FAD dependent oxidoreductase ABK1_1777 PF07992 Pyridine nucleotide-disulphide oxidoreductase ABK1_1777 PF04324 BFD-like [2Fe-2S] binding domain ABK1_1779 PF00083 Sugar (and other) transporter ABK1_1780 PF00171 Aldehyde dehydrogenase family ABK1_1781 PF13520 Amino acid permease ABK1_1782 PF03315 Serine dehydratase beta chain ABK1_1782 PF03313 Serine dehydratase alpha chain ABK1_1783 PF01575 MaoC like domain ABK1_1783 PF00171 Aldehyde dehydrogenase family ABK1_1784 PF05138 Phenylacetic acid catabolic protein ABK1_1785 PF06243 Phenylacetic acid degradation B ABK1_1786 PF05138 Phenylacetic acid catabolic protein ABK1_1787 PF01883 Iron-sulfur cluster assembly protein ABK1_1788 PF00111 2Fe-2S iron-sulfur cluster binding domain ABK1_1788 PF00970 Oxidoreductase FAD-binding domain ABK1_1788 PF00175 Oxidoreductase NAD-binding domain ABK1_1789 PF00378 Enoyl-CoA hydratase/isomerase ABK1_1790 PF00378 Enoyl-CoA hydratase/isomerase ABK1_1791 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain ABK1_1791 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain ABK1_1791 PF18321 3-hydroxybutyryl-CoA dehydrogenase reduced Rossmann-fold domain ABK1_1792 PF02803 Thiolase, C-terminal domain ABK1_1792 PF00108 Thiolase, N-terminal domain ABK1_1793 PF00501 AMP-binding enzyme ABK1_1793 PF14535 AMP-binding enzyme C-terminal domain ABK1_1794 PF07848 PaaX-like protein ABK1_1794 PF08223 PaaX-like protein C-terminal domain ABK1_1795 PF00132 Bacterial transferase hexapeptide (six repeats) ABK1_1796 PF03061 Thioesterase superfamily ABK1_1800 PF13737 Transposase DDE domain ABK1_1804 PF00199 Catalase ABK1_1805 PF01292 Prokaryotic cytochrome b561 ABK1_1809 PF12697 Alpha/beta hydrolase family ABK1_1810 PF01613 Flavin reductase like domain ABK1_1811 PF00296 Luciferase-like monooxygenase ABK1_1812 PF00171 Aldehyde dehydrogenase family ABK1_1814 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin ABK1_1816 PF00171 Aldehyde dehydrogenase family ABK1_1817 PF02627 Carboxymuconolactone decarboxylase family ABK1_1818 PF03466 LysR substrate binding domain ABK1_1818 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ABK1_1819 PF02525 Flavodoxin-like fold ABK1_1820 PF09339 IclR helix-turn-helix domain ABK1_1820 PF01614 Bacterial transcriptional regulator ABK1_1821 PF01494 FAD binding domain ABK1_1822 PF00392 Bacterial regulatory proteins, gntR family ABK1_1822 PF07702 UTRA domain ABK1_1824 PF08402 TOBE domain ABK1_1824 PF00005 ABC transporter ABK1_1825 PF00528 Binding-protein-dependent transport system inner membrane component ABK1_1826 PF01266 FAD dependent oxidoreductase ABK1_1827 PF00266 Aminotransferase class-V ABK1_1828 PF13419 Haloacid dehalogenase-like hydrolase ABK1_1829 PF07690 Major Facilitator Superfamily ABK1_1830 PF00441 Acyl-CoA dehydrogenase, C-terminal domain ABK1_1830 PF02771 Acyl-CoA dehydrogenase, N-terminal domain ABK1_1830 PF02770 Acyl-CoA dehydrogenase, middle domain ABK1_1831 PF02515 CoA-transferase family III ABK1_1834 PF09339 IclR helix-turn-helix domain ABK1_1835 PF00378 Enoyl-CoA hydratase/isomerase ABK1_1836 PF03060 Nitronate monooxygenase ABK1_1837 PF07690 Major Facilitator Superfamily ABK1_1838 PF09339 IclR helix-turn-helix domain ABK1_1839 PF02803 Thiolase, C-terminal domain ABK1_1839 PF00108 Thiolase, N-terminal domain ABK1_1840 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain ABK1_1840 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain ABK1_1840 PF18321 3-hydroxybutyryl-CoA dehydrogenase reduced Rossmann-fold domain ABK1_1842 PF00378 Enoyl-CoA hydratase/isomerase ABK1_1843 PF00441 Acyl-CoA dehydrogenase, C-terminal domain ABK1_1843 PF02770 Acyl-CoA dehydrogenase, middle domain ABK1_1843 PF02771 Acyl-CoA dehydrogenase, N-terminal domain ABK1_1844 PF07690 Major Facilitator Superfamily ABK1_1845 PF01144 Coenzyme A transferase ABK1_1846 PF01144 Coenzyme A transferase ABK1_1848 PF07690 Major Facilitator Superfamily ABK1_1850 PF02771 Acyl-CoA dehydrogenase, N-terminal domain ABK1_1850 PF02770 Acyl-CoA dehydrogenase, middle domain ABK1_1850 PF12806 Acetyl-CoA dehydrogenase C-terminal like ABK1_1850 PF00441 Acyl-CoA dehydrogenase, C-terminal domain ABK1_1853 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ABK1_1853 PF03466 LysR substrate binding domain ABK1_1854 PF00682 HMGL-like ABK1_1855 PF00289 Biotin carboxylase, N-terminal domain ABK1_1855 PF02785 Biotin carboxylase C-terminal domain ABK1_1855 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain ABK1_1855 PF00364 Biotin-requiring enzyme ABK1_1856 PF00378 Enoyl-CoA hydratase/isomerase ABK1_1857 PF01039 Carboxyl transferase domain ABK1_1858 PF00441 Acyl-CoA dehydrogenase, C-terminal domain ABK1_1858 PF02770 Acyl-CoA dehydrogenase, middle domain ABK1_1858 PF02771 Acyl-CoA dehydrogenase, N-terminal domain ABK1_1859 PF00440 Bacterial regulatory proteins, tetR family ABK1_1860 PF00501 AMP-binding enzyme ABK1_1860 PF13193 AMP-binding enzyme C-terminal domain ABK1_1864 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ABK1_1864 PF03466 LysR substrate binding domain ABK1_1871 PF18146 Damage-inducible protein CinA KH domain ABK1_1871 PF00994 Probable molybdopterin binding domain ABK1_1871 PF02464 Competence-damaged protein ABK1_1873 PF00199 Catalase ABK1_1873 PF06628 Catalase-related immune-responsive ABK1_1873 PF18011 C-terminal domain found in long catalases ABK1_1876 PF13737 Transposase DDE domain ABK1_1879 PF00717 Peptidase S24-like ABK1_1881 PF01037 Lrp/AsnC ligand binding domain ABK1_1881 PF13404 AsnC-type helix-turn-helix domain ABK1_1884 PF13737 Transposase DDE domain ABK1_1885 PF00512 His Kinase A (phospho-acceptor) domain ABK1_1885 PF00072 Response regulator receiver domain ABK1_1885 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ABK1_1885 PF09308 LuxQ, periplasmic ABK1_1886 PF00072 Response regulator receiver domain ABK1_1888 PF00528 Binding-protein-dependent transport system inner membrane component ABK1_1889 PF00528 Binding-protein-dependent transport system inner membrane component ABK1_1890 PF00005 ABC transporter ABK1_1891 PF00497 Bacterial extracellular solute-binding proteins, family 3 ABK1_1892 PF00497 Bacterial extracellular solute-binding proteins, family 3 ABK1_1894 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ABK1_1894 PF03466 LysR substrate binding domain ABK1_1895 PF01810 LysE type translocator ABK1_1897 PF00266 Aminotransferase class-V ABK1_1899 PF00132 Bacterial transferase hexapeptide (six repeats) ABK1_1900 PF00581 Rhodanese-like domain ABK1_1902 PF03466 LysR substrate binding domain ABK1_1902 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ABK1_1903 PF02798 Glutathione S-transferase, N-terminal domain ABK1_1904 PF14834 Glutathione S-transferase, C-terminal domain ABK1_1904 PF02798 Glutathione S-transferase, N-terminal domain ABK1_1905 PF03466 LysR substrate binding domain ABK1_1905 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ABK1_1906 PF03788 LrgA family ABK1_1907 PF04172 LrgB-like family ABK1_1908 PF00392 Bacterial regulatory proteins, gntR family ABK1_1908 PF00155 Aminotransferase class I and II ABK1_1911 PF07690 Major Facilitator Superfamily ABK1_1914 PF16957 Malonate decarboxylase, alpha subunit, transporter ABK1_1915 PF01874 ATP:dephospho-CoA triphosphoribosyl transferase ABK1_1916 PF06857 Malonate decarboxylase delta subunit (MdcD) ABK1_1917 PF01039 Carboxyl transferase domain ABK1_1919 PF10620 Phosphoribosyl-dephospho-CoA transferase MdcG ABK1_1920 PF00698 Acyl transferase domain ABK1_1923 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ABK1_1923 PF03466 LysR substrate binding domain ABK1_1924 PF00155 Aminotransferase class I and II ABK1_1924 PF00392 Bacterial regulatory proteins, gntR family ABK1_1926 PF02322 Cytochrome bd terminal oxidase subunit II ABK1_1927 PF01654 Cytochrome bd terminal oxidase subunit I ABK1_1929 PF02770 Acyl-CoA dehydrogenase, middle domain ABK1_1929 PF08028 Acyl-CoA dehydrogenase, C-terminal domain ABK1_1929 PF02771 Acyl-CoA dehydrogenase, N-terminal domain ABK1_1930 PF00296 Luciferase-like monooxygenase ABK1_1931 PF00083 Sugar (and other) transporter ABK1_1936 PF04069 Substrate binding domain of ABC-type glycine betaine transport system ABK1_1937 PF00005 ABC transporter ABK1_1938 PF00528 Binding-protein-dependent transport system inner membrane component ABK1_1939 PF02668 Taurine catabolism dioxygenase TauD, TfdA family ABK1_1940 PF01177 Asp/Glu/Hydantoin racemase ABK1_1941 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin ABK1_1943 PF03466 LysR substrate binding domain ABK1_1943 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ABK1_1945 PF01979 Amidohydrolase family ABK1_1945 PF13382 Adenine deaminase C-terminal domain ABK1_1947 PF03960 ArsC family ABK1_1948 PF01022 Bacterial regulatory protein, arsR family ABK1_1949 PF01758 Sodium Bile acid symporter family ABK1_1950 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ABK1_1950 PF03466 LysR substrate binding domain ABK1_1953 PF13192 Thioredoxin domain ABK1_1953 PF07992 Pyridine nucleotide-disulphide oxidoreductase ABK1_1956 PF00132 Bacterial transferase hexapeptide (six repeats) ABK1_1957 PF00588 SpoU rRNA Methylase family ABK1_1958 PF01336 OB-fold nucleic acid binding domain ABK1_1958 PF02811 PHP domain ABK1_1958 PF14579 Helix-hairpin-helix motif ABK1_1958 PF07733 Bacterial DNA polymerase III alpha NTPase domain ABK1_1958 PF17657 Bacterial DNA polymerase III alpha subunit finger domain ABK1_1959 PF17763 Glutaminase/Asparaginase C-terminal domain ABK1_1959 PF00710 Asparaginase, N-terminal ABK1_1960 PF00375 Sodium:dicarboxylate symporter family ABK1_1961 PF00155 Aminotransferase class I and II ABK1_1962 PF01641 SelR domain ABK1_1963 PF00255 Glutathione peroxidase ABK1_1964 PF12833 Helix-turn-helix domain ABK1_1964 PF12852 Cupin ABK1_1966 PF00155 Aminotransferase class I and II ABK1_1967 PF01966 HD domain ABK1_1967 PF01909 Nucleotidyltransferase domain ABK1_1967 PF08335 GlnD PII-uridylyltransferase ABK1_1968 PF02222 ATP-grasp domain ABK1_1970 PF05437 Branched-chain amino acid transport protein (AzlD) ABK1_1971 PF03591 AzlC protein ABK1_1976 PF06071 Protein of unknown function (DUF933) ABK1_1976 PF01926 50S ribosome-binding GTPase ABK1_1977 PF00528 Binding-protein-dependent transport system inner membrane component ABK1_1978 PF00005 ABC transporter ABK1_1978 PF09383 NIL domain ABK1_1979 PF03180 NLPA lipoprotein ABK1_1980 PF03180 NLPA lipoprotein ABK1_1981 PF00296 Luciferase-like monooxygenase ABK1_1983 PF08028 Acyl-CoA dehydrogenase, C-terminal domain ABK1_1983 PF02771 Acyl-CoA dehydrogenase, N-terminal domain ABK1_1986 PF00528 Binding-protein-dependent transport system inner membrane component ABK1_1987 PF00528 Binding-protein-dependent transport system inner membrane component ABK1_1988 PF00005 ABC transporter ABK1_1990 PF01037 Lrp/AsnC ligand binding domain ABK1_1991 PF01709 Transcriptional regulator ABK1_1993 PF00440 Bacterial regulatory proteins, tetR family ABK1_1997 PF03466 LysR substrate binding domain ABK1_1997 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ABK1_1999 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin ABK1_2001 PF00892 EamA-like transporter family ABK1_2005 PF13953 PapC C-terminal domain ABK1_2005 PF13954 PapC N-terminal domain ABK1_2005 PF00577 Outer membrane usher protein ABK1_2006 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain ABK1_2006 PF02753 Pili assembly chaperone PapD, C-terminal domain ABK1_2007 PF16970 Type-1 fimbrial protein, A ABK1_2008 PF13737 Transposase DDE domain ABK1_2011 PF04055 Radical SAM superfamily ABK1_2011 PF06968 Biotin and Thiamin Synthesis associated domain ABK1_2012 PF08331 Domain of unknown function (DUF1730) ABK1_2013 PF03853 YjeF-related protein N-terminus ABK1_2013 PF01256 Carbohydrate kinase ABK1_2014 PF02075 Crossover junction endodeoxyribonuclease RuvC ABK1_2018 PF00905 Penicillin binding protein transpeptidase domain ABK1_2024 PF02773 S-adenosylmethionine synthetase, C-terminal domain ABK1_2024 PF02772 S-adenosylmethionine synthetase, central domain ABK1_2024 PF00438 S-adenosylmethionine synthetase, N-terminal domain ABK1_2025 PF02779 Transketolase, pyrimidine binding domain ABK1_2025 PF02780 Transketolase, C-terminal domain ABK1_2025 PF00456 Transketolase, thiamine diphosphate binding domain ABK1_2027 PF04264 YceI-like domain ABK1_2029 PF09992 Phosphodiester glycosidase ABK1_2031 PF05958 tRNA (Uracil-5-)-methyltransferase ABK1_2032 PF04229 GrpB protein ABK1_2033 PF01619 Proline dehydrogenase ABK1_2033 PF14850 DNA-binding domain of Proline dehydrogenase ABK1_2033 PF18327 Proline utilization A proline dehydrogenase N-terminal domain ABK1_2033 PF00171 Aldehyde dehydrogenase family ABK1_2034 PF01037 Lrp/AsnC ligand binding domain ABK1_2035 PF00474 Sodium:solute symporter family ABK1_2036 PF02146 Sir2 family ABK1_2037 PF01597 Glycine cleavage H-protein ABK1_2038 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term ABK1_2038 PF12833 Helix-turn-helix domain ABK1_2040 PF00664 ABC transporter transmembrane region ABK1_2040 PF00005 ABC transporter ABK1_2041 PF09831 Uncharacterized protein conserved in bacteria (DUF2058) ABK1_2042 PF06912 Protein of unknown function (DUF1275) ABK1_2043 PF00375 Sodium:dicarboxylate symporter family ABK1_2046 PF08007 Cupin superfamily protein ABK1_2047 PF02545 Maf-like protein ABK1_2049 PF00162 Phosphoglycerate kinase ABK1_2051 PF01116 Fructose-bisphosphate aldolase class-II ABK1_2052 PF00639 PPIC-type PPIASE domain ABK1_2052 PF09312 SurA N-terminal domain ABK1_2053 PF04453 LPS transport system D ABK1_2053 PF03968 OstA-like protein ABK1_2054 PF01636 Phosphotransferase enzyme family ABK1_2055 PF00483 Nucleotidyl transferase ABK1_2056 PF02527 rRNA small subunit methyltransferase G ABK1_2057 PF13614 AAA domain ABK1_2058 PF02195 ParB-like nuclease domain ABK1_2058 PF17762 HTH domain found in ParB protein ABK1_2059 PF01618 MotA/TolQ/ExbB proton channel family ABK1_2061 PF00005 ABC transporter ABK1_2061 PF00664 ABC transporter transmembrane region ABK1_2062 PF02606 Tetraacyldisaccharide-1-P 4'-kinase ABK1_2063 PF02348 Cytidylyltransferase ABK1_2064 PF09115 DNA polymerase III, delta subunit, C terminal ABK1_2066 PF01026 TatD related DNase ABK1_2069 PF02501 Type II secretion system (T2SS), protein I ABK1_2069 PF07963 Prokaryotic N-terminal methylation motif ABK1_2070 PF07963 Prokaryotic N-terminal methylation motif ABK1_2070 PF11612 Type II secretion system (T2SS), protein J ABK1_2071 PF03934 Type II secretion system (T2SS), protein K ABK1_2073 PF03167 Uracil DNA glycosylase superfamily ABK1_2075 PF14437 MafB19-like deaminase ABK1_2077 PF02224 Cytidylate kinase ABK1_2078 PF00575 S1 RNA binding domain ABK1_2079 PF00216 Bacterial DNA-binding protein ABK1_2081 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family ABK1_2083 PF00743 Flavin-binding monooxygenase-like ABK1_2085 PF03969 AFG1-like ATPase ABK1_2086 PF01274 Malate synthase ABK1_2088 PF02472 Biopolymer transport protein ExbD/TolR ABK1_2089 PF02472 Biopolymer transport protein ExbD/TolR ABK1_2090 PF01618 MotA/TolQ/ExbB proton channel family ABK1_2092 PF07715 TonB-dependent Receptor Plug Domain ABK1_2092 PF00593 TonB dependent receptor ABK1_2095 PF01432 Peptidase family M3 ABK1_2096 PF00528 Binding-protein-dependent transport system inner membrane component ABK1_2097 PF00528 Binding-protein-dependent transport system inner membrane component ABK1_2098 PF00005 ABC transporter ABK1_2098 PF08352 Oligopeptide/dipeptide transporter, C-terminal region ABK1_2101 PF00459 Inositol monophosphatase family ABK1_2103 PF01649 Ribosomal protein S20 ABK1_2104 PF13460 NAD(P)H-binding ABK1_2105 PF03737 Aldolase/RraA ABK1_2109 PF17757 UvrB interaction domain ABK1_2109 PF00271 Helicase conserved C-terminal domain ABK1_2109 PF03461 TRCF domain ABK1_2109 PF02559 CarD-like/TRCF domain ABK1_2109 PF00270 DEAD/DEAH box helicase ABK1_2111 PF00211 Adenylate and Guanylate cyclase catalytic domain ABK1_2112 PF00111 2Fe-2S iron-sulfur cluster binding domain ABK1_2113 PF00012 Hsp70 protein ABK1_2114 PF00226 DnaJ domain ABK1_2114 PF07743 HSCB C-terminal oligomerisation domain ABK1_2115 PF01521 Iron-sulphur cluster biosynthesis ABK1_2116 PF01592 NifU-like N terminal domain ABK1_2117 PF00266 Aminotransferase class-V ABK1_2118 PF02082 Transcriptional regulator ABK1_2121 PF00216 Bacterial DNA-binding protein ABK1_2122 PF09312 SurA N-terminal domain ABK1_2122 PF00639 PPIC-type PPIASE domain ABK1_2123 PF12833 Helix-turn-helix domain ABK1_2123 PF12852 Cupin ABK1_2124 PF00487 Fatty acid desaturase ABK1_2125 PF00441 Acyl-CoA dehydrogenase, C-terminal domain ABK1_2125 PF02770 Acyl-CoA dehydrogenase, middle domain ABK1_2125 PF02771 Acyl-CoA dehydrogenase, N-terminal domain ABK1_2126 PF02770 Acyl-CoA dehydrogenase, middle domain ABK1_2126 PF02771 Acyl-CoA dehydrogenase, N-terminal domain ABK1_2126 PF00441 Acyl-CoA dehydrogenase, C-terminal domain ABK1_2127 PF03109 ABC1 family ABK1_2129 PF04073 Aminoacyl-tRNA editing domain ABK1_2130 PF06276 Ferric iron reductase FhuF-like transporter ABK1_2130 PF04183 IucA / IucC family ABK1_2131 PF13434 L-lysine 6-monooxygenase (NADPH-requiring) ABK1_2132 PF07690 Major Facilitator Superfamily ABK1_2133 PF04183 IucA / IucC family ABK1_2133 PF06276 Ferric iron reductase FhuF-like transporter ABK1_2134 PF06276 Ferric iron reductase FhuF-like transporter ABK1_2134 PF04183 IucA / IucC family ABK1_2137 PF00593 TonB dependent receptor ABK1_2137 PF07715 TonB-dependent Receptor Plug Domain ABK1_2145 PF02283 Cobinamide kinase / cobinamide phosphate guanyltransferase ABK1_2146 PF02277 Phosphoribosyltransferase ABK1_2149 PF02654 Cobalamin-5-phosphate synthase ABK1_2150 PF00793 DAHP synthetase I family ABK1_2151 PF01925 Sulfite exporter TauE/SafE ABK1_2155 PF07715 TonB-dependent Receptor Plug Domain ABK1_2155 PF00593 TonB dependent receptor ABK1_2156 PF02684 Lipid-A-disaccharide synthetase ABK1_2158 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion ABK1_2159 PF00005 ABC transporter ABK1_2166 PF01230 HIT domain ABK1_2173 PF08241 Methyltransferase domain ABK1_2174 PF00561 alpha/beta hydrolase fold ABK1_2175 PF01053 Cys/Met metabolism PLP-dependent enzyme ABK1_2177 PF02575 YbaB/EbfC DNA-binding family ABK1_2178 PF13662 Toprim domain ABK1_2178 PF02132 RecR protein ABK1_2179 PF01612 3'-5' exonuclease ABK1_2179 PF00570 HRDC domain ABK1_2183 PF05166 YcgL domain ABK1_2185 PF17862 AAA+ lid domain ABK1_2185 PF00004 ATPase family associated with various cellular activities (AAA) ABK1_2185 PF01434 Peptidase family M41 ABK1_2187 PF00291 Pyridoxal-phosphate dependent enzyme ABK1_2188 PF05175 Methyltransferase small domain ABK1_2189 PF01264 Chorismate synthase ABK1_2190 PF00990 Diguanylate cyclase, GGDEF domain ABK1_2190 PF08448 PAS fold ABK1_2193 PF04055 Radical SAM superfamily ABK1_2194 PF00676 Dehydrogenase E1 component ABK1_2195 PF02780 Transketolase, C-terminal domain ABK1_2195 PF02779 Transketolase, pyrimidine binding domain ABK1_2196 PF00364 Biotin-requiring enzyme ABK1_2196 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) ABK1_2196 PF02817 e3 binding domain ABK1_2197 PF07992 Pyridine nucleotide-disulphide oxidoreductase ABK1_2197 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain ABK1_2198 PF00106 short chain dehydrogenase ABK1_2199 PF08240 Alcohol dehydrogenase GroES-like domain ABK1_2199 PF00107 Zinc-binding dehydrogenase ABK1_2200 PF01062 Bestrophin, RFP-TM, chloride channel ABK1_2201 PF00158 Sigma-54 interaction domain ABK1_2201 PF00072 Response regulator receiver domain ABK1_2201 PF02954 Bacterial regulatory protein, Fis family ABK1_2202 PF04273 Putative phosphatase (DUF442) ABK1_2202 PF00753 Metallo-beta-lactamase superfamily ABK1_2203 PF04273 Putative phosphatase (DUF442) ABK1_2203 PF00753 Metallo-beta-lactamase superfamily ABK1_2204 PF01925 Sulfite exporter TauE/SafE ABK1_2207 PF12833 Helix-turn-helix domain ABK1_2207 PF06445 GyrI-like small molecule binding domain ABK1_2208 PF01638 HxlR-like helix-turn-helix ABK1_2209 PF02525 Flavodoxin-like fold ABK1_2214 PF04069 Substrate binding domain of ABC-type glycine betaine transport system ABK1_2215 PF00528 Binding-protein-dependent transport system inner membrane component ABK1_2216 PF00005 ABC transporter ABK1_2219 PF00083 Sugar (and other) transporter ABK1_2220 PF07715 TonB-dependent Receptor Plug Domain ABK1_2220 PF00593 TonB dependent receptor ABK1_2221 PF00206 Lyase ABK1_2221 PF10415 Fumarase C C-terminus ABK1_2224 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ABK1_2224 PF03466 LysR substrate binding domain ABK1_2225 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ABK1_2225 PF03466 LysR substrate binding domain ABK1_2226 PF00108 Thiolase, N-terminal domain ABK1_2226 PF02803 Thiolase, C-terminal domain ABK1_2227 PF02667 Short chain fatty acid transporter ABK1_2228 PF01144 Coenzyme A transferase ABK1_2229 PF01144 Coenzyme A transferase ABK1_2230 PF03466 LysR substrate binding domain ABK1_2230 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ABK1_2234 PF12833 Helix-turn-helix domain ABK1_2234 PF06719 AraC-type transcriptional regulator N-terminus ABK1_2235 PF07690 Major Facilitator Superfamily ABK1_2236 PF01738 Dienelactone hydrolase family ABK1_2239 PF01613 Flavin reductase like domain ABK1_2241 PF12833 Helix-turn-helix domain ABK1_2241 PF14525 AraC-binding-like domain ABK1_2242 PF00111 2Fe-2S iron-sulfur cluster binding domain ABK1_2242 PF00175 Oxidoreductase NAD-binding domain ABK1_2242 PF00970 Oxidoreductase FAD-binding domain ABK1_2243 PF00866 Ring hydroxylating beta subunit ABK1_2244 PF00848 Ring hydroxylating alpha subunit (catalytic domain) ABK1_2244 PF00355 Rieske [2Fe-2S] domain ABK1_2245 PF03459 TOBE domain ABK1_2245 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ABK1_2247 PF00528 Binding-protein-dependent transport system inner membrane component ABK1_2248 PF00005 ABC transporter ABK1_2248 PF03459 TOBE domain ABK1_2249 PF00106 short chain dehydrogenase ABK1_2250 PF00550 Phosphopantetheine attachment site ABK1_2250 PF00857 Isochorismatase family ABK1_2252 PF00149 Calcineurin-like phosphoesterase ABK1_2253 PF02503 Polyphosphate kinase middle domain ABK1_2253 PF17941 Polyphosphate kinase C-terminal domain 1 ABK1_2253 PF13089 Polyphosphate kinase N-terminal domain ABK1_2253 PF13090 Polyphosphate kinase C-terminal domain 2 ABK1_2254 PF12706 Beta-lactamase superfamily domain ABK1_2255 PF03070 TENA/THI-4/PQQC family ABK1_2256 PF05402 Coenzyme PQQ synthesis protein D (PqqD) ABK1_2257 PF13186 Iron-sulfur cluster-binding domain ABK1_2257 PF04055 Radical SAM superfamily ABK1_2258 PF01244 Membrane dipeptidase (Peptidase family M19) ABK1_2262 PF13091 PLD-like domain ABK1_2265 PF00199 Catalase ABK1_2267 PF08240 Alcohol dehydrogenase GroES-like domain ABK1_2267 PF00107 Zinc-binding dehydrogenase ABK1_2269 PF00419 Fimbrial protein ABK1_2270 PF00577 Outer membrane usher protein ABK1_2270 PF13954 PapC N-terminal domain ABK1_2270 PF13953 PapC C-terminal domain ABK1_2271 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain ABK1_2271 PF02753 Pili assembly chaperone PapD, C-terminal domain ABK1_2272 PF16970 Type-1 fimbrial protein, A ABK1_2275 PF01266 FAD dependent oxidoreductase ABK1_2278 PF01593 Flavin containing amine oxidoreductase ABK1_2279 PF00743 Flavin-binding monooxygenase-like ABK1_2280 PF12146 Serine aminopeptidase, S33 ABK1_2281 PF02321 Outer membrane efflux protein ABK1_2282 PF00873 AcrB/AcrD/AcrF family ABK1_2283 PF00529 HlyD membrane-fusion protein of T1SS ABK1_2283 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion ABK1_2284 PF00072 Response regulator receiver domain ABK1_2284 PF00486 Transcriptional regulatory protein, C terminal ABK1_2286 PF00512 His Kinase A (phospho-acceptor) domain ABK1_2286 PF00672 HAMP domain ABK1_2286 PF16527 Two-component sensor protein CpxA, periplasmic domain ABK1_2286 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ABK1_2288 PF02311 AraC-like ligand binding domain ABK1_2288 PF12833 Helix-turn-helix domain ABK1_2289 PF12146 Serine aminopeptidase, S33 ABK1_2296 PF13737 Transposase DDE domain ABK1_2300 PF13291 ACT domain ABK1_2300 PF04607 Region found in RelA / SpoT proteins ABK1_2300 PF02824 TGS domain ABK1_2302 PF01975 Survival protein SurE ABK1_2307 PF07690 Major Facilitator Superfamily ABK1_2308 PF13533 Biotin-lipoyl like ABK1_2309 PF01425 Amidase ABK1_2310 PF00196 Bacterial regulatory proteins, luxR family ABK1_2314 PF13737 Transposase DDE domain ABK1_2318 PF13737 Transposase DDE domain ABK1_2329 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family ABK1_2330 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase ABK1_2330 PF14572 Phosphoribosyl synthetase-associated domain ABK1_2334 PF00005 ABC transporter ABK1_2338 PF00107 Zinc-binding dehydrogenase ABK1_2338 PF08240 Alcohol dehydrogenase GroES-like domain ABK1_2341 PF06719 AraC-type transcriptional regulator N-terminus ABK1_2341 PF12833 Helix-turn-helix domain ABK1_2342 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase ABK1_2342 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase ABK1_2343 PF07690 Major Facilitator Superfamily ABK1_2344 PF01370 NAD dependent epimerase/dehydratase family ABK1_2345 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ABK1_2345 PF03466 LysR substrate binding domain ABK1_2347 PF00920 Dehydratase family ABK1_2348 PF00171 Aldehyde dehydrogenase family ABK1_2351 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion ABK1_2351 PF00529 HlyD membrane-fusion protein of T1SS ABK1_2355 PF03737 Aldolase/RraA ABK1_2356 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain ABK1_2356 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain ABK1_2356 PF01842 ACT domain ABK1_2357 PF07690 Major Facilitator Superfamily ABK1_2361 PF03466 LysR substrate binding domain ABK1_2361 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ABK1_2363 PF08450 SMP-30/Gluconolactonase/LRE-like region ABK1_2366 PF04909 Amidohydrolase ABK1_2367 PF07690 Major Facilitator Superfamily ABK1_2372 PF13332 Hemagglutinin repeat ABK1_2372 PF13018 Extended Signal Peptide of Type V secretion system ABK1_2372 PF04829 Pre-toxin domain with VENN motif ABK1_2372 PF05860 haemagglutination activity domain ABK1_2373 PF17287 POTRA domain ABK1_2373 PF08479 POTRA domain, ShlB-type ABK1_2373 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB ABK1_2376 PF07687 Peptidase dimerisation domain ABK1_2376 PF01546 Peptidase family M20/M25/M40 ABK1_2379 PF02254 TrkA-N domain ABK1_2379 PF00999 Sodium/hydrogen exchanger family ABK1_2380 PF07995 Glucose / Sorbosone dehydrogenase ABK1_2381 PF03466 LysR substrate binding domain ABK1_2381 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ABK1_2382 PF00857 Isochorismatase family ABK1_2384 PF00440 Bacterial regulatory proteins, tetR family ABK1_2384 PF08359 YsiA-like protein, C-terminal region ABK1_2385 PF12706 Beta-lactamase superfamily domain ABK1_2387 PF07992 Pyridine nucleotide-disulphide oxidoreductase ABK1_2389 PF00376 MerR family regulatory protein ABK1_2389 PF09278 MerR, DNA binding ABK1_2390 PF01872 RibD C-terminal domain ABK1_2391 PF00106 short chain dehydrogenase ABK1_2392 PF07992 Pyridine nucleotide-disulphide oxidoreductase ABK1_2392 PF00724 NADH:flavin oxidoreductase / NADH oxidase family ABK1_2395 PF01047 MarR family ABK1_2396 PF07859 alpha/beta hydrolase fold ABK1_2400 PF06628 Catalase-related immune-responsive ABK1_2400 PF00199 Catalase ABK1_2401 PF00561 alpha/beta hydrolase fold ABK1_2405 PF00171 Aldehyde dehydrogenase family ABK1_2406 PF08240 Alcohol dehydrogenase GroES-like domain ABK1_2406 PF00107 Zinc-binding dehydrogenase ABK1_2407 PF00474 Sodium:solute symporter family ABK1_2408 PF04341 Protein of unknown function, DUF485 ABK1_2409 PF13193 AMP-binding enzyme C-terminal domain ABK1_2409 PF00501 AMP-binding enzyme ABK1_2410 PF02954 Bacterial regulatory protein, Fis family ABK1_2410 PF00158 Sigma-54 interaction domain ABK1_2410 PF06506 Propionate catabolism activator ABK1_2412 PF02770 Acyl-CoA dehydrogenase, middle domain ABK1_2412 PF00441 Acyl-CoA dehydrogenase, C-terminal domain ABK1_2412 PF02771 Acyl-CoA dehydrogenase, N-terminal domain ABK1_2416 PF00171 Aldehyde dehydrogenase family ABK1_2418 PF07690 Major Facilitator Superfamily ABK1_2419 PF00920 Dehydratase family ABK1_2420 PF00392 Bacterial regulatory proteins, gntR family ABK1_2420 PF07729 FCD domain ABK1_2422 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ABK1_2422 PF03466 LysR substrate binding domain ABK1_2423 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain ABK1_2423 PF13378 Enolase C-terminal domain-like ABK1_2424 PF02426 Muconolactone delta-isomerase ABK1_2425 PF00775 Dioxygenase ABK1_2425 PF04444 Catechol dioxygenase N terminus ABK1_2426 PF01144 Coenzyme A transferase ABK1_2427 PF01144 Coenzyme A transferase ABK1_2428 PF02803 Thiolase, C-terminal domain ABK1_2428 PF00108 Thiolase, N-terminal domain ABK1_2429 PF12146 Serine aminopeptidase, S33 ABK1_2430 PF01804 Penicillin amidase ABK1_2431 PF00171 Aldehyde dehydrogenase family ABK1_2433 PF02728 Copper amine oxidase, N3 domain ABK1_2433 PF02727 Copper amine oxidase, N2 domain ABK1_2433 PF07833 Copper amine oxidase N-terminal domain ABK1_2433 PF01179 Copper amine oxidase, enzyme domain ABK1_2435 PF02311 AraC-like ligand binding domain ABK1_2435 PF12833 Helix-turn-helix domain ABK1_2436 PF01613 Flavin reductase like domain ABK1_2437 PF00175 Oxidoreductase NAD-binding domain ABK1_2437 PF00111 2Fe-2S iron-sulfur cluster binding domain ABK1_2440 PF00355 Rieske [2Fe-2S] domain ABK1_2440 PF00848 Ring hydroxylating alpha subunit (catalytic domain) ABK1_2443 PF08028 Acyl-CoA dehydrogenase, C-terminal domain ABK1_2444 PF01425 Amidase ABK1_2446 PF07690 Major Facilitator Superfamily ABK1_2448 PF00106 short chain dehydrogenase ABK1_2451 PF00441 Acyl-CoA dehydrogenase, C-terminal domain ABK1_2451 PF02770 Acyl-CoA dehydrogenase, middle domain ABK1_2451 PF02771 Acyl-CoA dehydrogenase, N-terminal domain ABK1_2452 PF03466 LysR substrate binding domain ABK1_2452 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ABK1_2453 PF01614 Bacterial transcriptional regulator ABK1_2453 PF09339 IclR helix-turn-helix domain ABK1_2454 PF00753 Metallo-beta-lactamase superfamily ABK1_2456 PF04143 Sulphur transport ABK1_2458 PF13360 PQQ-like domain ABK1_2458 PF01011 PQQ enzyme repeat ABK1_2459 PF04966 Carbohydrate-selective porin, OprB family ABK1_2460 PF05048 Periplasmic copper-binding protein (NosD) ABK1_2461 PF01487 Type I 3-dehydroquinase ABK1_2462 PF00775 Dioxygenase ABK1_2463 PF12391 Protocatechuate 3,4-dioxygenase beta subunit N terminal ABK1_2463 PF00775 Dioxygenase ABK1_2464 PF02627 Carboxymuconolactone decarboxylase family ABK1_2465 PF07690 Major Facilitator Superfamily ABK1_2466 PF00561 alpha/beta hydrolase fold ABK1_2467 PF00206 Lyase ABK1_2467 PF10397 Adenylosuccinate lyase C-terminus ABK1_2468 PF00108 Thiolase, N-terminal domain ABK1_2468 PF02803 Thiolase, C-terminal domain ABK1_2469 PF01144 Coenzyme A transferase ABK1_2470 PF01144 Coenzyme A transferase ABK1_2471 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase ABK1_2472 PF04977 Septum formation initiator ABK1_2473 PF04239 Protein of unknown function (DUF421) ABK1_2474 PF00113 Enolase, C-terminal TIM barrel domain ABK1_2474 PF03952 Enolase, N-terminal domain ABK1_2475 PF00793 DAHP synthetase I family ABK1_2476 PF00117 Glutamine amidotransferase class-I ABK1_2476 PF06418 CTP synthase N-terminus ABK1_2482 PF07992 Pyridine nucleotide-disulphide oxidoreductase ABK1_2482 PF00724 NADH:flavin oxidoreductase / NADH oxidase family ABK1_2485 PF00793 DAHP synthetase I family ABK1_2486 PF02694 Uncharacterised BCR, YnfA/UPF0060 family ABK1_2487 PF00004 ATPase family associated with various cellular activities (AAA) ABK1_2487 PF07724 AAA domain (Cdc48 subfamily) ABK1_2487 PF17871 AAA lid domain ABK1_2487 PF02861 Clp amino terminal domain, pathogenicity island component ABK1_2487 PF10431 C-terminal, D2-small domain, of ClpB protein ABK1_2488 PF02617 ATP-dependent Clp protease adaptor protein ClpS ABK1_2490 PF02774 Semialdehyde dehydrogenase, dimerisation domain ABK1_2490 PF01118 Semialdehyde dehydrogenase, NAD binding domain ABK1_2493 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) ABK1_2494 PF00585 C-terminal regulatory domain of Threonine dehydratase ABK1_2494 PF00291 Pyridoxal-phosphate dependent enzyme ABK1_2495 PF02080 TrkA-C domain ABK1_2495 PF02254 TrkA-N domain ABK1_2496 PF02386 Cation transport protein ABK1_2497 PF02253 Phospholipase A1 ABK1_2498 PF08367 Peptidase M16C associated ABK1_2498 PF00675 Insulinase (Peptidase family M16) ABK1_2498 PF05193 Peptidase M16 inactive domain ABK1_2499 PF00593 TonB dependent receptor ABK1_2499 PF07715 TonB-dependent Receptor Plug Domain ABK1_2501 PF00294 pfkB family carbohydrate kinase ABK1_2503 PF07290 Protein of unknown function (DUF1449) ABK1_2504 PF13737 Transposase DDE domain ABK1_2505 PF01654 Cytochrome bd terminal oxidase subunit I ABK1_2506 PF02322 Cytochrome bd terminal oxidase subunit II ABK1_2509 PF09829 Uncharacterized protein conserved in bacteria (DUF2057) ABK1_2511 PF02881 SRP54-type protein, helical bundle domain ABK1_2511 PF00448 SRP54-type protein, GTPase domain ABK1_2516 PF00571 CBS domain ABK1_2516 PF00478 IMP dehydrogenase / GMP reductase domain ABK1_2517 PF00202 Aminotransferase class-III ABK1_2518 PF00462 Glutaredoxin ABK1_2520 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ABK1_2520 PF03466 LysR substrate binding domain ABK1_2521 PF00557 Metallopeptidase family M24 ABK1_2522 PF05525 Branched-chain amino acid transport protein ABK1_2526 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 ABK1_2526 PF00391 PEP-utilising enzyme, mobile domain ABK1_2526 PF05524 PEP-utilising enzyme, N-terminal ABK1_2526 PF02896 PEP-utilising enzyme, TIM barrel domain ABK1_2526 PF00381 PTS HPr component phosphorylation site ABK1_2527 PF00294 pfkB family carbohydrate kinase ABK1_2528 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit ABK1_2528 PF02378 Phosphotransferase system, EIIC ABK1_2533 PF03707 Bacterial signalling protein N terminal repeat ABK1_2533 PF00990 Diguanylate cyclase, GGDEF domain ABK1_2533 PF00563 EAL domain ABK1_2535 PF07995 Glucose / Sorbosone dehydrogenase ABK1_2536 PF02586 SOS response associated peptidase (SRAP) ABK1_2537 PF01740 STAS domain ABK1_2537 PF00916 Sulfate permease family ABK1_2538 PF00082 Subtilase family ABK1_2538 PF05922 Peptidase inhibitor I9 ABK1_2540 PF00324 Amino acid permease ABK1_2541 PF00266 Aminotransferase class-V ABK1_2542 PF01037 Lrp/AsnC ligand binding domain ABK1_2547 PF13419 Haloacid dehalogenase-like hydrolase ABK1_2548 PF01479 S4 domain ABK1_2549 PF00154 recA bacterial DNA recombination protein ABK1_2550 PF02631 RecX family ABK1_2552 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 ABK1_2552 PF00132 Bacterial transferase hexapeptide (six repeats) ABK1_2553 PF07977 FabA-like domain ABK1_2554 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD ABK1_2554 PF00132 Bacterial transferase hexapeptide (six repeats) ABK1_2556 PF07244 Surface antigen variable number repeat ABK1_2556 PF01103 Surface antigen ABK1_2557 PF02163 Peptidase family M50 ABK1_2557 PF17820 PDZ domain ABK1_2557 PF13180 PDZ domain ABK1_2558 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain ABK1_2558 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase ABK1_2558 PF13288 DXP reductoisomerase C-terminal domain ABK1_2560 PF01255 Putative undecaprenyl diphosphate synthase ABK1_2561 PF01765 Ribosome recycling factor ABK1_2562 PF00696 Amino acid kinase family ABK1_2563 PF04055 Radical SAM superfamily ABK1_2563 PF18693 TRAM domain ABK1_2563 PF00919 Uncharacterized protein family UPF0004 ABK1_2565 PF00989 PAS fold ABK1_2565 PF00512 His Kinase A (phospho-acceptor) domain ABK1_2565 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ABK1_2566 PF00158 Sigma-54 interaction domain ABK1_2566 PF02954 Bacterial regulatory protein, Fis family ABK1_2566 PF00072 Response regulator receiver domain ABK1_2567 PF00440 Bacterial regulatory proteins, tetR family ABK1_2569 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain ABK1_2569 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain ABK1_2571 PF02542 YgbB family ABK1_2573 PF01266 FAD dependent oxidoreductase ABK1_2577 PF10415 Fumarase C C-terminus ABK1_2577 PF00206 Lyase ABK1_2578 PF16363 GDP-mannose 4,6 dehydratase ABK1_2579 PF02635 DsrE/DsrF-like family ABK1_2583 PF00892 EamA-like transporter family ABK1_2584 PF00392 Bacterial regulatory proteins, gntR family ABK1_2584 PF00155 Aminotransferase class I and II ABK1_2585 PF01638 HxlR-like helix-turn-helix ABK1_2586 PF03454 MoeA C-terminal region (domain IV) ABK1_2586 PF00994 Probable molybdopterin binding domain ABK1_2586 PF03453 MoeA N-terminal region (domain I and II) ABK1_2587 PF01967 MoaC family ABK1_2587 PF00994 Probable molybdopterin binding domain ABK1_2588 PF02391 MoaE protein ABK1_2590 PF06463 Molybdenum Cofactor Synthesis C ABK1_2590 PF04055 Radical SAM superfamily ABK1_2591 PF00384 Molybdopterin oxidoreductase ABK1_2591 PF01568 Molydopterin dinucleotide binding domain ABK1_2591 PF04879 Molybdopterin oxidoreductase Fe4S4 domain ABK1_2592 PF12804 MobA-like NTP transferase domain ABK1_2593 PF01568 Molydopterin dinucleotide binding domain ABK1_2593 PF04879 Molybdopterin oxidoreductase Fe4S4 domain ABK1_2593 PF04324 BFD-like [2Fe-2S] binding domain ABK1_2593 PF00384 Molybdopterin oxidoreductase ABK1_2594 PF07992 Pyridine nucleotide-disulphide oxidoreductase ABK1_2594 PF18267 Rubredoxin NAD+ reductase C-terminal domain ABK1_2594 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain ABK1_2594 PF04324 BFD-like [2Fe-2S] binding domain ABK1_2594 PF01077 Nitrite and sulphite reductase 4Fe-4S domain ABK1_2595 PF01077 Nitrite and sulphite reductase 4Fe-4S domain ABK1_2595 PF13806 Rieske-like [2Fe-2S] domain ABK1_2595 PF18267 Rubredoxin NAD+ reductase C-terminal domain ABK1_2595 PF07992 Pyridine nucleotide-disulphide oxidoreductase ABK1_2595 PF04324 BFD-like [2Fe-2S] binding domain ABK1_2595 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain ABK1_2596 PF00486 Transcriptional regulatory protein, C terminal ABK1_2596 PF00072 Response regulator receiver domain ABK1_2597 PF00005 ABC transporter ABK1_2598 PF11799 impB/mucB/samB family C-terminal domain ABK1_2598 PF00817 impB/mucB/samB family ABK1_2598 PF13438 Domain of unknown function (DUF4113) ABK1_2599 PF01220 Dehydroquinase class II ABK1_2600 PF00364 Biotin-requiring enzyme ABK1_2601 PF02785 Biotin carboxylase C-terminal domain ABK1_2601 PF00289 Biotin carboxylase, N-terminal domain ABK1_2601 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain ABK1_2603 PF12832 MFS_1 like family ABK1_2604 PF08019 Phosphoethanolamine transferase EptA/EptB ABK1_2604 PF00884 Sulfatase ABK1_2619 PF01551 Peptidase family M23 ABK1_2619 PF10145 Phage-related minor tail protein ABK1_2619 PF01464 Transglycosylase SLT domain ABK1_2622 PF15919 HicB_like antitoxin of bacterial toxin-antitoxin system ABK1_2669 PF00117 Glutamine amidotransferase class-I ABK1_2670 PF11838 ERAP1-like C-terminal domain ABK1_2670 PF01433 Peptidase family M1 domain ABK1_2671 PF00593 TonB dependent receptor ABK1_2671 PF07715 TonB-dependent Receptor Plug Domain ABK1_2672 PF02885 Glycosyl transferase family, helical bundle domain ABK1_2672 PF00591 Glycosyl transferase family, a/b domain ABK1_2673 PF00218 Indole-3-glycerol phosphate synthase ABK1_2676 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase ABK1_2676 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain ABK1_2677 PF00111 2Fe-2S iron-sulfur cluster binding domain ABK1_2677 PF01799 [2Fe-2S] binding domain ABK1_2681 PF00144 Beta-lactamase ABK1_2685 PF05675 Protein of unknown function (DUF817) ABK1_2686 PF01208 Uroporphyrinogen decarboxylase (URO-D) ABK1_2688 PF00425 chorismate binding enzyme ABK1_2690 PF00975 Thioesterase domain ABK1_2691 PF00005 ABC transporter ABK1_2691 PF00664 ABC transporter transmembrane region ABK1_2692 PF00005 ABC transporter ABK1_2692 PF00664 ABC transporter transmembrane region ABK1_2695 PF00282 Pyridoxal-dependent decarboxylase conserved domain ABK1_2696 PF00857 Isochorismatase family ABK1_2696 PF00550 Phosphopantetheine attachment site ABK1_2697 PF00501 AMP-binding enzyme ABK1_2697 PF13193 AMP-binding enzyme C-terminal domain ABK1_2698 PF00550 Phosphopantetheine attachment site ABK1_2698 PF00501 AMP-binding enzyme ABK1_2698 PF00668 Condensation domain ABK1_2699 PF13434 L-lysine 6-monooxygenase (NADPH-requiring) ABK1_2700 PF00593 TonB dependent receptor ABK1_2700 PF07715 TonB-dependent Receptor Plug Domain ABK1_2701 PF01497 Periplasmic binding protein ABK1_2702 PF00005 ABC transporter ABK1_2703 PF01032 FecCD transport family ABK1_2704 PF01032 FecCD transport family ABK1_2705 PF00501 AMP-binding enzyme ABK1_2705 PF00668 Condensation domain ABK1_2705 PF13193 AMP-binding enzyme C-terminal domain ABK1_2705 PF00550 Phosphopantetheine attachment site ABK1_2705 PF00975 Thioesterase domain ABK1_2706 PF00668 Condensation domain ABK1_2706 PF13193 AMP-binding enzyme C-terminal domain ABK1_2706 PF00501 AMP-binding enzyme ABK1_2706 PF00550 Phosphopantetheine attachment site ABK1_2708 PF08348 YheO-like PAS domain ABK1_2708 PF13309 HTH domain ABK1_2709 PF00291 Pyridoxal-phosphate dependent enzyme ABK1_2710 PF00291 Pyridoxal-phosphate dependent enzyme ABK1_2711 PF17954 Quercetinase C-terminal cupin domain ABK1_2711 PF02678 Pirin ABK1_2715 PF00440 Bacterial regulatory proteins, tetR family ABK1_2716 PF16197 Ketoacyl-synthetase C-terminal extension ABK1_2716 PF00698 Acyl transferase domain ABK1_2716 PF14765 Polyketide synthase dehydratase ABK1_2716 PF08240 Alcohol dehydrogenase GroES-like domain ABK1_2716 PF08990 Erythronolide synthase docking ABK1_2716 PF00550 Phosphopantetheine attachment site ABK1_2716 PF08659 KR domain ABK1_2716 PF09277 Erythronolide synthase, docking ABK1_2716 PF02801 Beta-ketoacyl synthase, C-terminal domain ABK1_2716 PF00109 Beta-ketoacyl synthase, N-terminal domain ABK1_2717 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain ABK1_2717 PF13378 Enolase C-terminal domain-like ABK1_2718 PF00083 Sugar (and other) transporter ABK1_2720 PF02604 Antitoxin Phd_YefM, type II toxin-antitoxin system ABK1_2722 PF00892 EamA-like transporter family ABK1_2727 PF01266 FAD dependent oxidoreductase ABK1_2727 PF05430 S-adenosyl-L-methionine-dependent methyltransferase ABK1_2728 PF18113 Rubredoxin binding C-terminal domain ABK1_2728 PF07992 Pyridine nucleotide-disulphide oxidoreductase ABK1_2734 PF02028 BCCT, betaine/carnitine/choline family transporter ABK1_2735 PF02028 BCCT, betaine/carnitine/choline family transporter ABK1_2737 PF03466 LysR substrate binding domain ABK1_2737 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ABK1_2738 PF00324 Amino acid permease ABK1_2739 PF00171 Aldehyde dehydrogenase family ABK1_2742 PF06018 CodY GAF-like domain ABK1_2742 PF13556 PucR C-terminal helix-turn-helix domain ABK1_2742 PF17853 GGDEF-like domain ABK1_2748 PF04328 Selenoprotein, putative ABK1_2749 PF13722 5TM C-terminal transporter carbon starvation CstA ABK1_2749 PF02554 Carbon starvation protein CstA ABK1_2750 PF09285 Elongation factor P, C-terminal ABK1_2750 PF01132 Elongation factor P (EF-P) OB domain ABK1_2750 PF08207 Elongation factor P (EF-P) KOW-like domain ABK1_2751 PF04055 Radical SAM superfamily ABK1_2754 PF01197 Ribosomal protein L31 ABK1_2755 PF13593 SBF-like CPA transporter family (DUF4137) ABK1_2756 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily ABK1_2757 PF07690 Major Facilitator Superfamily ABK1_2758 PF13654 AAA domain ABK1_2758 PF05362 Lon protease (S16) C-terminal proteolytic domain ABK1_2759 PF03466 LysR substrate binding domain ABK1_2759 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ABK1_2760 PF01551 Peptidase family M23 ABK1_2760 PF01476 LysM domain ABK1_2761 PF01975 Survival protein SurE ABK1_2764 PF07943 Penicillin-binding protein 5, C-terminal domain ABK1_2764 PF00768 D-alanyl-D-alanine carboxypeptidase ABK1_2765 PF00132 Bacterial transferase hexapeptide (six repeats) ABK1_2766 PF00293 NUDIX domain ABK1_2766 PF13344 Haloacid dehalogenase-like hydrolase ABK1_2768 PF04356 Protein of unknown function (DUF489) ABK1_2769 PF08328 Adenylosuccinate lyase C-terminal ABK1_2769 PF00206 Lyase ABK1_2772 PF01343 Peptidase family S49 ABK1_2772 PF08496 Peptidase family S49 N-terminal ABK1_2773 PF00005 ABC transporter ABK1_2774 PF00528 Binding-protein-dependent transport system inner membrane component ABK1_2775 PF00528 Binding-protein-dependent transport system inner membrane component ABK1_2776 PF12849 PBP superfamily domain ABK1_2777 PF13737 Transposase DDE domain ABK1_2778 PF00324 Amino acid permease ABK1_2779 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain ABK1_2779 PF00205 Thiamine pyrophosphate enzyme, central domain ABK1_2779 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain ABK1_2780 PF01037 Lrp/AsnC ligand binding domain ABK1_2781 PF00171 Aldehyde dehydrogenase family ABK1_2782 PF00282 Pyridoxal-dependent decarboxylase conserved domain ABK1_2783 PF00202 Aminotransferase class-III ABK1_2785 PF00440 Bacterial regulatory proteins, tetR family ABK1_2785 PF17754 MftR C-terminal domain ABK1_2787 PF00487 Fatty acid desaturase ABK1_2788 PF00111 2Fe-2S iron-sulfur cluster binding domain ABK1_2788 PF00175 Oxidoreductase NAD-binding domain ABK1_2788 PF00970 Oxidoreductase FAD-binding domain ABK1_2789 PF00440 Bacterial regulatory proteins, tetR family ABK1_2791 PF18339 RapA N-terminal Tudor like domain 1 ABK1_2791 PF12137 RNA polymerase recycling family C-terminal ABK1_2791 PF00271 Helicase conserved C-terminal domain ABK1_2791 PF18337 RapA N-terminal Tudor like domain ABK1_2791 PF00176 SNF2 family N-terminal domain ABK1_2792 PF00849 RNA pseudouridylate synthase ABK1_2794 PF00202 Aminotransferase class-III ABK1_2795 PF02581 Thiamine monophosphate synthase ABK1_2800 PF00675 Insulinase (Peptidase family M16) ABK1_2800 PF05193 Peptidase M16 inactive domain ABK1_2801 PF02567 Phenazine biosynthesis-like protein ABK1_2803 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ABK1_2803 PF03466 LysR substrate binding domain ABK1_2804 PF06779 Uncharacterised MFS-type transporter YbfB ABK1_2807 PF00180 Isocitrate/isopropylmalate dehydrogenase ABK1_2808 PF00849 RNA pseudouridylate synthase ABK1_2809 PF03971 Monomeric isocitrate dehydrogenase ABK1_2811 PF00768 D-alanyl-D-alanine carboxypeptidase ABK1_2811 PF07943 Penicillin-binding protein 5, C-terminal domain ABK1_2812 PF07992 Pyridine nucleotide-disulphide oxidoreductase ABK1_2813 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase ABK1_2814 PF00875 DNA photolyase ABK1_2814 PF03441 FAD binding domain of DNA photolyase ABK1_2820 PF02350 UDP-N-acetylglucosamine 2-epimerase ABK1_2823 PF03060 Nitronate monooxygenase ABK1_2824 PF01207 Dihydrouridine synthase (Dus) ABK1_2825 PF07759 Protein of unknown function (DUF1615) ABK1_2827 PF00696 Amino acid kinase family ABK1_2827 PF01472 PUA domain ABK1_2828 PF01926 50S ribosome-binding GTPase ABK1_2828 PF01018 GTP1/OBG ABK1_2831 PF13737 Transposase DDE domain ABK1_2833 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain ABK1_2833 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain ABK1_2834 PF00892 EamA-like transporter family ABK1_2836 PF17757 UvrB interaction domain ABK1_2836 PF12344 Ultra-violet resistance protein B ABK1_2836 PF04851 Type III restriction enzyme, res subunit ABK1_2836 PF00271 Helicase conserved C-terminal domain ABK1_2836 PF02151 UvrB/uvrC motif ABK1_2838 PF17151 Periplasmic sensor domain ABK1_2838 PF00990 Diguanylate cyclase, GGDEF domain ABK1_2844 PF00106 short chain dehydrogenase ABK1_2845 PF06175 tRNA-(MS[2]IO[6]A)-hydroxylase (MiaE) ABK1_2846 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ ABK1_2847 PF02565 Recombination protein O C terminal ABK1_2847 PF11967 Recombination protein O N terminal ABK1_2849 PF07650 KH domain ABK1_2849 PF01926 50S ribosome-binding GTPase ABK1_2850 PF00035 Double-stranded RNA binding motif ABK1_2850 PF14622 Ribonuclease-III-like ABK1_2852 PF10502 Signal peptidase, peptidase S26 ABK1_2853 PF00679 Elongation factor G C-terminus ABK1_2853 PF03144 Elongation factor Tu domain 2 ABK1_2853 PF06421 GTP-binding protein LepA C-terminus ABK1_2853 PF00009 Elongation factor Tu GTP binding domain ABK1_2855 PF13180 PDZ domain ABK1_2856 PF02910 Fumarate reductase flavoprotein C-term ABK1_2856 PF00890 FAD binding domain ABK1_2858 PF02223 Thymidylate kinase ABK1_2859 PF02618 YceG-like family ABK1_2860 PF01063 Amino-transferase class IV ABK1_2863 PF00528 Binding-protein-dependent transport system inner membrane component ABK1_2864 PF00528 Binding-protein-dependent transport system inner membrane component ABK1_2865 PF00005 ABC transporter ABK1_2865 PF12857 TOBE-like domain ABK1_2866 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ABK1_2866 PF03466 LysR substrate binding domain ABK1_2868 PF14805 Tetrahydrodipicolinate N-succinyltransferase N-terminal ABK1_2868 PF14602 Hexapeptide repeat of succinyl-transferase ABK1_2868 PF00132 Bacterial transferase hexapeptide (six repeats) ABK1_2870 PF06508 Queuosine biosynthesis protein QueC ABK1_2873 PF00578 AhpC/TSA family ABK1_2875 PF00293 NUDIX domain ABK1_2875 PF01467 Cytidylyltransferase-like ABK1_2876 PF00378 Enoyl-CoA hydratase/isomerase ABK1_2877 PF01784 NIF3 (NGG1p interacting factor 3) ABK1_2879 PF07690 Major Facilitator Superfamily ABK1_2880 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain ABK1_2880 PF18076 Formylglycinamide ribonucleotide amidotransferase N-terminal ABK1_2880 PF02769 AIR synthase related protein, C-terminal domain ABK1_2881 PF01966 HD domain ABK1_2882 PF07499 RuvA, C-terminal domain ABK1_2882 PF01330 RuvA N terminal domain ABK1_2883 PF05491 RuvB C-terminal winged helix domain ABK1_2883 PF05496 Holliday junction DNA helicase RuvB P-loop domain ABK1_2883 PF17864 RuvB AAA lid domain ABK1_2884 PF07687 Peptidase dimerisation domain ABK1_2884 PF01546 Peptidase family M20/M25/M40 ABK1_2885 PF03061 Thioesterase superfamily ABK1_2886 PF01618 MotA/TolQ/ExbB proton channel family ABK1_2887 PF02472 Biopolymer transport protein ExbD/TolR ABK1_2889 PF04052 TolB amino-terminal domain ABK1_2889 PF07676 WD40-like Beta Propeller Repeat ABK1_2890 PF00691 OmpA family ABK1_2892 PF00316 Fructose-1-6-bisphosphatase, N-terminal domain ABK1_2893 PF08032 RNA 2'-O ribose methyltransferase substrate binding ABK1_2893 PF00588 SpoU rRNA Methylase family ABK1_2901 PF00308 Bacterial dnaA protein ABK1_2901 PF08299 Bacterial dnaA protein helix-turn-helix ABK1_2901 PF11638 DnaA N-terminal domain ABK1_2902 PF01594 AI-2E family transporter ABK1_2903 PF02769 AIR synthase related protein, C-terminal domain ABK1_2903 PF00586 AIR synthase related protein, N-terminal domain ABK1_2904 PF00551 Formyl transferase ABK1_2905 PF12697 Alpha/beta hydrolase family ABK1_2906 PF06965 Na+/H+ antiporter 1 ABK1_2906 PF01343 Peptidase family S49 ABK1_2907 PF13567 Domain of unknown function (DUF4131) ABK1_2907 PF00753 Metallo-beta-lactamase superfamily ABK1_2907 PF03772 Competence protein ABK1_2908 PF00005 ABC transporter ABK1_2909 PF12704 MacB-like periplasmic core domain ABK1_2909 PF02687 FtsX-like permease family ABK1_2911 PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 ABK1_2913 PF00266 Aminotransferase class-V ABK1_2916 PF13533 Biotin-lipoyl like ABK1_2920 PF00535 Glycosyl transferase family 2 ABK1_2923 PF00521 DNA gyrase/topoisomerase IV, subunit A ABK1_2923 PF03989 DNA gyrase C-terminal domain, beta-propeller ABK1_2924 PF01012 Electron transfer flavoprotein domain ABK1_2924 PF00766 Electron transfer flavoprotein FAD-binding domain ABK1_2925 PF01012 Electron transfer flavoprotein domain ABK1_2926 PF00589 Phage integrase family ABK1_2926 PF02899 Phage integrase, N-terminal SAM-like domain ABK1_2927 PF01810 LysE type translocator ABK1_2928 PF01678 Diaminopimelate epimerase ABK1_2929 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain ABK1_2929 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain ABK1_2931 PF00324 Amino acid permease ABK1_2933 PF18073 Rubredoxin metal binding domain ABK1_2936 PF00152 tRNA synthetases class II (D, K and N) ABK1_2937 PF11890 Domain of unknown function (DUF3410) ABK1_2937 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain ABK1_2937 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain ABK1_2938 PF06803 Protein of unknown function (DUF1232) ABK1_2939 PF02634 FdhD/NarQ family ABK1_2940 PF00384 Molybdopterin oxidoreductase ABK1_2941 PF02595 Glycerate kinase family ABK1_2942 PF02595 Glycerate kinase family ABK1_2944 PF00881 Nitroreductase family ABK1_2949 PF00501 AMP-binding enzyme ABK1_2949 PF13193 AMP-binding enzyme C-terminal domain ABK1_2949 PF00550 Phosphopantetheine attachment site ABK1_2949 PF00975 Thioesterase domain ABK1_2949 PF00668 Condensation domain ABK1_2951 PF03449 Transcription elongation factor, N-terminal ABK1_2951 PF01272 Transcription elongation factor, GreA/GreB, C-term ABK1_2952 PF00497 Bacterial extracellular solute-binding proteins, family 3 ABK1_2952 PF01464 Transglycosylase SLT domain ABK1_2954 PF01171 PP-loop family ABK1_2955 PF01464 Transglycosylase SLT domain ABK1_2956 PF01435 Peptidase family M48 ABK1_2958 PF00873 AcrB/AcrD/AcrF family ABK1_2959 PF03009 Glycerophosphoryl diester phosphodiesterase family ABK1_2960 PF00753 Metallo-beta-lactamase superfamily ABK1_2961 PF01219 Prokaryotic diacylglycerol kinase ABK1_2962 PF00118 TCP-1/cpn60 chaperonin family ABK1_2963 PF00166 Chaperonin 10 Kd subunit ABK1_2965 PF00149 Calcineurin-like phosphoesterase ABK1_2966 PF00781 Diacylglycerol kinase catalytic domain ABK1_2967 PF00821 Phosphoenolpyruvate carboxykinase C-terminal P-loop domain ABK1_2967 PF17297 Phosphoenolpyruvate carboxykinase N-terminal domain ABK1_2968 PF16901 C-terminal domain of alpha-glycerophosphate oxidase ABK1_2968 PF01266 FAD dependent oxidoreductase ABK1_2969 PF02782 FGGY family of carbohydrate kinases, C-terminal domain ABK1_2969 PF00370 FGGY family of carbohydrate kinases, N-terminal domain ABK1_2970 PF00083 Sugar (and other) transporter ABK1_2973 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain ABK1_2973 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain ABK1_2974 PF09423 PhoD-like phosphatase ABK1_2974 PF16655 PhoD-like phosphatase, N-terminal domain ABK1_2977 PF00809 Pterin binding enzyme ABK1_2978 PF01434 Peptidase family M41 ABK1_2978 PF17862 AAA+ lid domain ABK1_2978 PF00004 ATPase family associated with various cellular activities (AAA) ABK1_2978 PF06480 FtsH Extracellular ABK1_2979 PF01728 FtsJ-like methyltransferase ABK1_2980 PF01985 CRS1 / YhbY (CRM) domain ABK1_2983 PF00117 Glutamine amidotransferase class-I ABK1_2983 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain ABK1_2984 PF02142 MGS-like domain ABK1_2984 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain ABK1_2984 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain ABK1_2985 PF01272 Transcription elongation factor, GreA/GreB, C-term ABK1_2985 PF03449 Transcription elongation factor, N-terminal ABK1_2986 PF00132 Bacterial transferase hexapeptide (six repeats) ABK1_2987 PF00582 Universal stress protein family ABK1_2988 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain ABK1_2990 PF09587 Bacterial capsule synthesis protein PGA_cap ABK1_3001 PF00999 Sodium/hydrogen exchanger family ABK1_3002 PF04228 Putative neutral zinc metallopeptidase ABK1_3003 PF05661 Protein of unknown function (DUF808) ABK1_3004 PF00579 tRNA synthetases class I (W and Y) ABK1_3005 PF02629 CoA binding domain ABK1_3005 PF00549 CoA-ligase ABK1_3006 PF00549 CoA-ligase ABK1_3006 PF08442 ATP-grasp domain ABK1_3007 PF07992 Pyridine nucleotide-disulphide oxidoreductase ABK1_3007 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain ABK1_3008 PF02817 e3 binding domain ABK1_3008 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) ABK1_3008 PF00364 Biotin-requiring enzyme ABK1_3009 PF02779 Transketolase, pyrimidine binding domain ABK1_3009 PF00676 Dehydrogenase E1 component ABK1_3009 PF16078 2-oxoglutarate dehydrogenase N-terminus ABK1_3009 PF16870 2-oxoglutarate dehydrogenase C-terminal ABK1_3010 PF13085 2Fe-2S iron-sulfur cluster binding domain ABK1_3011 PF02910 Fumarate reductase flavoprotein C-term ABK1_3011 PF00890 FAD binding domain ABK1_3012 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit ABK1_3013 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit ABK1_3014 PF00285 Citrate synthase, C-terminal domain ABK1_3020 PF04545 Sigma-70, region 4 ABK1_3020 PF00140 Sigma-70 factor, region 1.2 ABK1_3020 PF03979 Sigma-70 factor, region 1.1 ABK1_3020 PF04546 Sigma-70, non-essential region ABK1_3020 PF04542 Sigma-70 region 2 ABK1_3020 PF04539 Sigma-70 region 3 ABK1_3021 PF04359 Protein of unknown function (DUF493) ABK1_3022 PF03099 Biotin/lipoate A/B protein ligase family ABK1_3024 PF00465 Iron-containing alcohol dehydrogenase ABK1_3025 PF13520 Amino acid permease ABK1_3026 PF03358 NADPH-dependent FMN reductase ABK1_3027 PF01638 HxlR-like helix-turn-helix ABK1_3028 PF00588 SpoU rRNA Methylase family ABK1_3029 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases ABK1_3029 PF14824 Sirohaem biosynthesis protein central ABK1_3029 PF10414 Sirohaem synthase dimerisation region ABK1_3030 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) ABK1_3030 PF02403 Seryl-tRNA synthetase N-terminal domain ABK1_3032 PF03548 Outer membrane lipoprotein carrier protein LolA ABK1_3033 PF01016 Ribosomal L27 protein ABK1_3034 PF00829 Ribosomal prokaryotic L21 protein ABK1_3035 PF00348 Polyprenyl synthetase ABK1_3037 PF01569 PAP2 superfamily ABK1_3038 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion ABK1_3038 PF00529 HlyD membrane-fusion protein of T1SS ABK1_3039 PF00873 AcrB/AcrD/AcrF family ABK1_3040 PF02321 Outer membrane efflux protein ABK1_3041 PF01906 Putative heavy-metal-binding ABK1_3042 PF01906 Putative heavy-metal-binding ABK1_3046 PF08264 Anticodon-binding domain of tRNA ABK1_3046 PF00133 tRNA synthetases class I (I, L, M and V) ABK1_3046 PF10458 Valyl tRNA synthetase tRNA binding arm ABK1_3050 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ABK1_3050 PF03466 LysR substrate binding domain ABK1_3051 PF00909 Ammonium Transporter Family ABK1_3053 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ABK1_3053 PF08521 Two-component sensor kinase N-terminal ABK1_3053 PF00512 His Kinase A (phospho-acceptor) domain ABK1_3054 PF00072 Response regulator receiver domain ABK1_3054 PF00486 Transcriptional regulatory protein, C terminal ABK1_3055 PF00884 Sulfatase ABK1_3055 PF08019 Phosphoethanolamine transferase EptA/EptB ABK1_3059 PF01734 Patatin-like phospholipase ABK1_3061 PF01145 SPFH domain / Band 7 family ABK1_3062 PF04237 YjbR ABK1_3063 PF00348 Polyprenyl synthetase ABK1_3064 PF04303 PrpF protein ABK1_3066 PF00324 Amino acid permease ABK1_3067 PF01965 DJ-1/PfpI family ABK1_3068 PF00550 Phosphopantetheine attachment site ABK1_3068 PF00109 Beta-ketoacyl synthase, N-terminal domain ABK1_3068 PF08659 KR domain ABK1_3068 PF16197 Ketoacyl-synthetase C-terminal extension ABK1_3068 PF09277 Erythronolide synthase, docking ABK1_3068 PF14765 Polyketide synthase dehydratase ABK1_3068 PF00698 Acyl transferase domain ABK1_3068 PF08240 Alcohol dehydrogenase GroES-like domain ABK1_3068 PF08990 Erythronolide synthase docking ABK1_3068 PF02801 Beta-ketoacyl synthase, C-terminal domain ABK1_3069 PF12833 Helix-turn-helix domain ABK1_3069 PF06719 AraC-type transcriptional regulator N-terminus ABK1_3070 PF02673 Bacitracin resistance protein BacA ABK1_3074 PF02525 Flavodoxin-like fold ABK1_3077 PF01507 Phosphoadenosine phosphosulfate reductase family ABK1_3078 PF03007 Wax ester synthase-like Acyl-CoA acyltransferase domain ABK1_3078 PF06974 Protein of unknown function (DUF1298) ABK1_3080 PF10150 Ribonuclease E/G family ABK1_3080 PF00575 S1 RNA binding domain ABK1_3081 PF02545 Maf-like protein ABK1_3083 PF04085 rod shape-determining protein MreC ABK1_3085 PF02686 Glu-tRNAGln amidotransferase C subunit ABK1_3086 PF01425 Amidase ABK1_3087 PF02934 GatB/GatE catalytic domain ABK1_3087 PF02637 GatB domain ABK1_3093 PF05992 SbmA/BacA-like family ABK1_3094 PF13291 ACT domain ABK1_3094 PF00291 Pyridoxal-phosphate dependent enzyme ABK1_3095 PF01734 Patatin-like phospholipase ABK1_3096 PF01235 Sodium:alanine symporter family ABK1_3099 PF00881 Nitroreductase family ABK1_3100 PF07690 Major Facilitator Superfamily ABK1_3101 PF12805 FUSC-like inner membrane protein yccS ABK1_3103 PF00667 FAD binding domain ABK1_3103 PF00258 Flavodoxin ABK1_3103 PF00175 Oxidoreductase NAD-binding domain ABK1_3105 PF03734 L,D-transpeptidase catalytic domain ABK1_3105 PF17969 L,D-transpeptidase C-terminal domain ABK1_3106 PF04304 Protein of unknown function (DUF454) ABK1_3108 PF08085 Entericidin EcnA/B family ABK1_3109 PF01546 Peptidase family M20/M25/M40 ABK1_3109 PF07687 Peptidase dimerisation domain ABK1_3111 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ABK1_3111 PF01627 Hpt domain ABK1_3111 PF01584 CheW-like domain ABK1_3111 PF00072 Response regulator receiver domain ABK1_3112 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain ABK1_3112 PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term ABK1_3113 PF01584 CheW-like domain ABK1_3114 PF00072 Response regulator receiver domain ABK1_3115 PF00072 Response regulator receiver domain ABK1_3118 PF00873 AcrB/AcrD/AcrF family ABK1_3119 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) ABK1_3119 PF03129 Anticodon binding domain ABK1_3119 PF04073 Aminoacyl-tRNA editing domain ABK1_3120 PF07411 Domain of unknown function (DUF1508) ABK1_3121 PF03831 PhnA domain ABK1_3121 PF08274 PhnA Zinc-Ribbon ABK1_3122 PF04343 Protein of unknown function, DUF488 ABK1_3124 PF01571 Aminomethyltransferase folate-binding domain ABK1_3125 PF13098 Thioredoxin-like domain ABK1_3125 PF10411 Disulfide bond isomerase protein N-terminus ABK1_3127 PF03547 Membrane transport protein ABK1_3128 PF00724 NADH:flavin oxidoreductase / NADH oxidase family ABK1_3129 PF07715 TonB-dependent Receptor Plug Domain ABK1_3129 PF00593 TonB dependent receptor ABK1_3130 PF02245 Methylpurine-DNA glycosylase (MPG) ABK1_3131 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain ABK1_3131 PF06827 Zinc finger found in FPG and IleRS ABK1_3131 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain ABK1_3134 PF01741 Large-conductance mechanosensitive channel, MscL ABK1_3136 PF00860 Permease family ABK1_3137 PF05175 Methyltransferase small domain ABK1_3137 PF08468 Methyltransferase small domain N-terminal ABK1_3138 PF00324 Amino acid permease ABK1_3139 PF01139 tRNA-splicing ligase RtcB ABK1_3141 PF00691 OmpA family ABK1_3141 PF13505 Outer membrane protein beta-barrel domain ABK1_3143 PF00108 Thiolase, N-terminal domain ABK1_3143 PF02803 Thiolase, C-terminal domain ABK1_3145 PF00893 Small Multidrug Resistance protein ABK1_3147 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain ABK1_3147 PF01077 Nitrite and sulphite reductase 4Fe-4S domain ABK1_3148 PF01011 PQQ enzyme repeat ABK1_3150 PF04966 Carbohydrate-selective porin, OprB family ABK1_3151 PF02515 CoA-transferase family III ABK1_3152 PF12833 Helix-turn-helix domain ABK1_3152 PF02311 AraC-like ligand binding domain ABK1_3153 PF02803 Thiolase, C-terminal domain ABK1_3153 PF00108 Thiolase, N-terminal domain ABK1_3154 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain ABK1_3154 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain ABK1_3154 PF00378 Enoyl-CoA hydratase/isomerase ABK1_3160 PF03006 Haemolysin-III related ABK1_3161 PF07690 Major Facilitator Superfamily ABK1_3161 PF00083 Sugar (and other) transporter ABK1_3163 PF07517 SecA DEAD-like domain ABK1_3163 PF01043 SecA preprotein cross-linking domain ABK1_3163 PF02810 SEC-C motif ABK1_3163 PF07516 SecA Wing and Scaffold domain ABK1_3164 PF00578 AhpC/TSA family ABK1_3164 PF10417 C-terminal domain of 1-Cys peroxiredoxin ABK1_3165 PF00753 Metallo-beta-lactamase superfamily ABK1_3168 PF08245 Mur ligase middle domain ABK1_3168 PF02875 Mur ligase family, glutamate ligase domain ABK1_3169 PF01039 Carboxyl transferase domain ABK1_3170 PF00290 Tryptophan synthase alpha chain ABK1_3175 PF00291 Pyridoxal-phosphate dependent enzyme ABK1_3176 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase ABK1_3177 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase ABK1_3178 PF00593 TonB dependent receptor ABK1_3178 PF07715 TonB-dependent Receptor Plug Domain ABK1_3179 PF01923 Cobalamin adenosyltransferase ABK1_3183 PF02696 Uncharacterized ACR, YdiU/UPF0061 family ABK1_3184 PF00486 Transcriptional regulatory protein, C terminal ABK1_3184 PF00072 Response regulator receiver domain ABK1_3185 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ABK1_3185 PF00672 HAMP domain ABK1_3185 PF00512 His Kinase A (phospho-acceptor) domain ABK1_3187 PF02771 Acyl-CoA dehydrogenase, N-terminal domain ABK1_3187 PF02770 Acyl-CoA dehydrogenase, middle domain ABK1_3187 PF12806 Acetyl-CoA dehydrogenase C-terminal like ABK1_3187 PF00441 Acyl-CoA dehydrogenase, C-terminal domain ABK1_3188 PF00441 Acyl-CoA dehydrogenase, C-terminal domain ABK1_3188 PF02770 Acyl-CoA dehydrogenase, middle domain ABK1_3188 PF12806 Acetyl-CoA dehydrogenase C-terminal like ABK1_3188 PF02771 Acyl-CoA dehydrogenase, N-terminal domain ABK1_3189 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ABK1_3189 PF03466 LysR substrate binding domain ABK1_3190 PF00043 Glutathione S-transferase, C-terminal domain ABK1_3190 PF02798 Glutathione S-transferase, N-terminal domain ABK1_3191 PF06146 Phosphate-starvation-inducible E ABK1_3195 PF00593 TonB dependent receptor ABK1_3195 PF07715 TonB-dependent Receptor Plug Domain ABK1_3197 PF01336 OB-fold nucleic acid binding domain ABK1_3197 PF00152 tRNA synthetases class II (D, K and N) ABK1_3197 PF02938 GAD domain ABK1_3198 PF17102 Stealth protein CR3, conserved region 3 ABK1_3198 PF11380 Stealth protein CR2, conserved region 2 ABK1_3198 PF17101 Stealth protein CR1, conserved region 1 ABK1_3203 PF13439 Glycosyltransferase Family 4 ABK1_3203 PF00534 Glycosyl transferases group 1 ABK1_3204 PF00535 Glycosyl transferase family 2 ABK1_3205 PF01522 Polysaccharide deacetylase ABK1_3208 PF01063 Amino-transferase class IV ABK1_3209 PF08335 GlnD PII-uridylyltransferase ABK1_3209 PF03710 Glutamate-ammonia ligase adenylyltransferase ABK1_3210 PF00512 His Kinase A (phospho-acceptor) domain ABK1_3210 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ABK1_3210 PF07689 KaiB domain ABK1_3214 PF02547 Queuosine biosynthesis protein ABK1_3217 PF01702 Queuine tRNA-ribosyltransferase ABK1_3218 PF02699 Preprotein translocase subunit ABK1_3219 PF02355 Protein export membrane protein ABK1_3219 PF13721 SecD export protein N-terminal TM region ABK1_3219 PF07549 SecD/SecF GG Motif ABK1_3220 PF02355 Protein export membrane protein ABK1_3220 PF07549 SecD/SecF GG Motif ABK1_3221 PF04127 DNA / pantothenate metabolism flavoprotein ABK1_3221 PF02441 Flavoprotein ABK1_3222 PF04002 RadC-like JAB domain ABK1_3223 PF01062 Bestrophin, RFP-TM, chloride channel ABK1_3224 PF02811 PHP domain ABK1_3225 PF04279 Intracellular septation protein A ABK1_3226 PF03795 YCII-related domain ABK1_3228 PF05430 S-adenosyl-L-methionine-dependent methyltransferase ABK1_3228 PF01266 FAD dependent oxidoreductase ABK1_3230 PF04461 Protein of unknown function (DUF520) ABK1_3232 PF03061 Thioesterase superfamily ABK1_3233 PF00085 Thioredoxin ABK1_3234 PF00561 alpha/beta hydrolase fold ABK1_3235 PF00753 Metallo-beta-lactamase superfamily ABK1_3235 PF04273 Putative phosphatase (DUF442) ABK1_3237 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain ABK1_3237 PF07992 Pyridine nucleotide-disulphide oxidoreductase ABK1_3239 PF00990 Diguanylate cyclase, GGDEF domain ABK1_3239 PF17152 Periplasmic sensor domain ABK1_3240 PF00691 OmpA family ABK1_3240 PF01389 OmpA-like transmembrane domain ABK1_3241 PF00149 Calcineurin-like phosphoesterase ABK1_3241 PF10518 TAT (twin-arginine translocation) pathway signal sequence ABK1_3242 PF13091 PLD-like domain ABK1_3244 PF16360 GTP-binding GTPase Middle Region ABK1_3244 PF13167 GTP-binding GTPase N-terminal ABK1_3244 PF01926 50S ribosome-binding GTPase ABK1_3248 PF00149 Calcineurin-like phosphoesterase ABK1_3249 PF00398 Ribosomal RNA adenine dimethylase ABK1_3250 PF04166 Pyridoxal phosphate biosynthetic protein PdxA ABK1_3251 PF00572 Ribosomal protein L13 ABK1_3252 PF00380 Ribosomal protein S9/S16 ABK1_3253 PF00043 Glutathione S-transferase, C-terminal domain ABK1_3253 PF13417 Glutathione S-transferase, N-terminal domain ABK1_3254 PF04386 Stringent starvation protein B ABK1_3256 PF00289 Biotin carboxylase, N-terminal domain ABK1_3256 PF02785 Biotin carboxylase C-terminal domain ABK1_3256 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain ABK1_3256 PF00364 Biotin-requiring enzyme ABK1_3258 PF00441 Acyl-CoA dehydrogenase, C-terminal domain ABK1_3258 PF02771 Acyl-CoA dehydrogenase, N-terminal domain ABK1_3258 PF02770 Acyl-CoA dehydrogenase, middle domain ABK1_3259 PF01039 Carboxyl transferase domain ABK1_3262 PF00440 Bacterial regulatory proteins, tetR family ABK1_3262 PF17932 Tetracyclin repressor-like, C-terminal domain ABK1_3263 PF02771 Acyl-CoA dehydrogenase, N-terminal domain ABK1_3263 PF02770 Acyl-CoA dehydrogenase, middle domain ABK1_3263 PF00441 Acyl-CoA dehydrogenase, C-terminal domain ABK1_3267 PF01066 CDP-alcohol phosphatidyltransferase ABK1_3268 PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ ABK1_3272 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain ABK1_3272 PF00056 lactate/malate dehydrogenase, NAD binding domain ABK1_3274 PF01464 Transglycosylase SLT domain ABK1_3274 PF10145 Phage-related minor tail protein ABK1_3274 PF01551 Peptidase family M23 ABK1_3275 PF04055 Radical SAM superfamily ABK1_3275 PF01938 TRAM domain ABK1_3275 PF00919 Uncharacterized protein family UPF0004 ABK1_3276 PF02562 PhoH-like protein ABK1_3277 PF02130 Uncharacterized protein family UPF0054 ABK1_3282 PF03358 NADPH-dependent FMN reductase ABK1_3283 PF03631 Virulence factor BrkB ABK1_3284 PF00892 EamA-like transporter family ABK1_3285 PF12833 Helix-turn-helix domain ABK1_3286 PF01557 Fumarylacetoacetate (FAA) hydrolase family ABK1_3291 PF08206 Ribonuclease B OB domain ABK1_3291 PF00773 RNB domain ABK1_3291 PF00575 S1 RNA binding domain ABK1_3291 PF08461 Ribonuclease R winged-helix domain ABK1_3291 PF17876 Cold shock domain ABK1_3292 PF01432 Peptidase family M3 ABK1_3293 PF09526 Probable metal-binding protein (DUF2387) ABK1_3299 PF03937 Flavinator of succinate dehydrogenase ABK1_3300 PF02771 Acyl-CoA dehydrogenase, N-terminal domain ABK1_3300 PF00441 Acyl-CoA dehydrogenase, C-terminal domain ABK1_3300 PF02770 Acyl-CoA dehydrogenase, middle domain ABK1_3301 PF00743 Flavin-binding monooxygenase-like ABK1_3302 PF01196 Ribosomal protein L17 ABK1_3303 PF01000 RNA polymerase Rpb3/RpoA insert domain ABK1_3303 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain ABK1_3303 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain ABK1_3304 PF00163 Ribosomal protein S4/S9 N-terminal domain ABK1_3304 PF01479 S4 domain ABK1_3305 PF00411 Ribosomal protein S11 ABK1_3306 PF00416 Ribosomal protein S13/S18 ABK1_3307 PF00444 Ribosomal protein L36 ABK1_3308 PF00344 SecY translocase ABK1_3309 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A ABK1_3310 PF00327 Ribosomal protein L30p/L7e ABK1_3311 PF00333 Ribosomal protein S5, N-terminal domain ABK1_3311 PF03719 Ribosomal protein S5, C-terminal domain ABK1_3312 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast ABK1_3313 PF00347 Ribosomal protein L6 ABK1_3314 PF00410 Ribosomal protein S8 ABK1_3315 PF00253 Ribosomal protein S14p/S29e ABK1_3316 PF00673 ribosomal L5P family C-terminus ABK1_3316 PF00281 Ribosomal protein L5 ABK1_3317 PF00467 KOW motif ABK1_3317 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 ABK1_3318 PF00238 Ribosomal protein L14p/L23e ABK1_3319 PF00366 Ribosomal protein S17 ABK1_3320 PF00831 Ribosomal L29 protein ABK1_3321 PF00252 Ribosomal protein L16p/L10e ABK1_3322 PF00189 Ribosomal protein S3, C-terminal domain ABK1_3322 PF07650 KH domain ABK1_3323 PF00237 Ribosomal protein L22p/L17e ABK1_3324 PF00203 Ribosomal protein S19 ABK1_3325 PF00181 Ribosomal Proteins L2, RNA binding domain ABK1_3325 PF03947 Ribosomal Proteins L2, C-terminal domain ABK1_3326 PF00276 Ribosomal protein L23 ABK1_3327 PF00573 Ribosomal protein L4/L1 family ABK1_3328 PF00297 Ribosomal protein L3 ABK1_3329 PF00338 Ribosomal protein S10p/S20e ABK1_3330 PF00117 Glutamine amidotransferase class-I ABK1_3331 PF01053 Cys/Met metabolism PLP-dependent enzyme ABK1_3332 PF05872 Bacterial protein of unknown function (DUF853) ABK1_3333 PF00042 Globin ABK1_3333 PF00970 Oxidoreductase FAD-binding domain ABK1_3333 PF00175 Oxidoreductase NAD-binding domain ABK1_3334 PF02082 Transcriptional regulator ABK1_3335 PF01926 50S ribosome-binding GTPase ABK1_3337 PF00375 Sodium:dicarboxylate symporter family ABK1_3339 PF01553 Acyltransferase ABK1_3342 PF00270 DEAD/DEAH box helicase ABK1_3342 PF17191 RecG wedge domain ABK1_3342 PF00271 Helicase conserved C-terminal domain ABK1_3343 PF00156 Phosphoribosyl transferase domain ABK1_3344 PF00293 NUDIX domain ABK1_3345 PF03641 Possible lysine decarboxylase ABK1_3346 PF01544 CorA-like Mg2+ transporter protein ABK1_3348 PF05494 MlaC protein ABK1_3350 PF02405 Permease MlaE ABK1_3351 PF00005 ABC transporter ABK1_3353 PF00271 Helicase conserved C-terminal domain ABK1_3353 PF12343 Cold shock protein DEAD box A ABK1_3353 PF00270 DEAD/DEAH box helicase ABK1_3353 PF03880 DbpA RNA binding domain ABK1_3354 PF00459 Inositol monophosphatase family ABK1_3355 PF02780 Transketolase, C-terminal domain ABK1_3355 PF02779 Transketolase, pyrimidine binding domain ABK1_3355 PF13292 1-deoxy-D-xylulose-5-phosphate synthase ABK1_3356 PF00925 GTP cyclohydrolase II ABK1_3357 PF01218 Coproporphyrinogen III oxidase ABK1_3358 PF18317 Shikimate 5'-dehydrogenase C-terminal domain ABK1_3358 PF01488 Shikimate / quinate 5-dehydrogenase ABK1_3358 PF08501 Shikimate dehydrogenase substrate binding domain ABK1_3360 PF02771 Acyl-CoA dehydrogenase, N-terminal domain ABK1_3360 PF00441 Acyl-CoA dehydrogenase, C-terminal domain ABK1_3360 PF12806 Acetyl-CoA dehydrogenase C-terminal like ABK1_3360 PF02770 Acyl-CoA dehydrogenase, middle domain ABK1_3362 PF04024 PspC domain ABK1_3363 PF00571 CBS domain ABK1_3368 PF02091 Glycyl-tRNA synthetase alpha subunit ABK1_3369 PF02092 Glycyl-tRNA synthetase beta subunit ABK1_3369 PF05746 DALR anticodon binding domain ABK1_3371 PF00892 EamA-like transporter family ABK1_3372 PF03466 LysR substrate binding domain ABK1_3372 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ABK1_3378 PF04952 Succinylglutamate desuccinylase / Aspartoacylase family ABK1_3379 PF04996 Succinylarginine dihydrolase ABK1_3380 PF00171 Aldehyde dehydrogenase family ABK1_3381 PF04958 Arginine N-succinyltransferase beta subunit ABK1_3382 PF00202 Aminotransferase class-III ABK1_3383 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase ABK1_3383 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain ABK1_3385 PF00324 Amino acid permease ABK1_3391 PF13614 AAA domain ABK1_3392 PF01594 AI-2E family transporter ABK1_3393 PF00080 Copper/zinc superoxide dismutase (SODC) ABK1_3394 PF12805 FUSC-like inner membrane protein yccS ABK1_3395 PF07690 Major Facilitator Superfamily ABK1_3397 PF02525 Flavodoxin-like fold ABK1_3398 PF03992 Antibiotic biosynthesis monooxygenase ABK1_3400 PF02913 FAD linked oxidases, C-terminal domain ABK1_3400 PF01565 FAD binding domain ABK1_3401 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain ABK1_3401 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain ABK1_3402 PF00892 EamA-like transporter family ABK1_3403 PF00892 EamA-like transporter family ABK1_3405 PF01925 Sulfite exporter TauE/SafE ABK1_3406 PF09157 Pseudouridine synthase II TruB, C-terminal ABK1_3406 PF16198 tRNA pseudouridylate synthase B C-terminal domain ABK1_3406 PF01509 TruB family pseudouridylate synthase (N terminal domain) ABK1_3407 PF03280 Proteobacterial lipase chaperone protein ABK1_3408 PF00561 alpha/beta hydrolase fold ABK1_3409 PF01245 Ribosomal protein L19 ABK1_3410 PF01746 tRNA (Guanine-1)-methyltransferase ABK1_3411 PF05239 PRC-barrel domain ABK1_3411 PF01782 RimM N-terminal domain ABK1_3412 PF00886 Ribosomal protein S16 ABK1_3420 PF02401 LytB protein ABK1_3421 PF00625 Guanylate kinase ABK1_3422 PF01192 RNA polymerase Rpb6 ABK1_3423 PF02824 TGS domain ABK1_3423 PF04607 Region found in RelA / SpoT proteins ABK1_3423 PF13291 ACT domain ABK1_3424 PF01042 Endoribonuclease L-PSP ABK1_3425 PF04324 BFD-like [2Fe-2S] binding domain ABK1_3426 PF00210 Ferritin-like domain ABK1_3427 PF15864 Protein glycosylation ligase ABK1_3427 PF04932 O-Antigen ligase ABK1_3427 PF11846 Virulence factor membrane-bound polymerase, C-terminal ABK1_3429 PF13737 Transposase DDE domain ABK1_3431 PF07963 Prokaryotic N-terminal methylation motif ABK1_3431 PF00114 Pilin (bacterial filament) ABK1_3433 PF04536 TPM domain ABK1_3434 PF04011 LemA family ABK1_3436 PF07992 Pyridine nucleotide-disulphide oxidoreductase ABK1_3436 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster ABK1_3437 PF04898 Glutamate synthase central domain ABK1_3437 PF01645 Conserved region in glutamate synthase ABK1_3437 PF01493 GXGXG motif ABK1_3437 PF00310 Glutamine amidotransferases class-II ABK1_3439 PF01761 3-dehydroquinate synthase ABK1_3440 PF01202 Shikimate kinase ABK1_3441 PF07660 Secretin and TonB N terminus short domain ABK1_3441 PF11741 AMIN domain ABK1_3441 PF00263 Bacterial type II and III secretion system protein ABK1_3441 PF03958 Bacterial type II/III secretion system short domain ABK1_3446 PF17092 Penicillin-binding protein OB-like domain ABK1_3446 PF00912 Transglycosylase ABK1_3446 PF00905 Penicillin binding protein transpeptidase domain ABK1_3447 PF13847 Methyltransferase domain ABK1_3449 PF00953 Glycosyl transferase family 4 ABK1_3450 PF01225 Mur ligase family, catalytic domain ABK1_3450 PF02875 Mur ligase family, glutamate ligase domain ABK1_3450 PF08245 Mur ligase middle domain ABK1_3451 PF08245 Mur ligase middle domain ABK1_3451 PF02875 Mur ligase family, glutamate ligase domain ABK1_3451 PF01225 Mur ligase family, catalytic domain ABK1_3452 PF00905 Penicillin binding protein transpeptidase domain ABK1_3452 PF03717 Penicillin-binding Protein dimerisation domain ABK1_3454 PF01795 MraW methylase family ABK1_3457 PF00749 tRNA synthetases class I (E and Q), catalytic domain ABK1_3458 PF00324 Amino acid permease ABK1_3462 PF01545 Cation efflux family ABK1_3463 PF00873 AcrB/AcrD/AcrF family ABK1_3464 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion ABK1_3464 PF00529 HlyD membrane-fusion protein of T1SS ABK1_3470 PF00005 ABC transporter ABK1_3470 PF12848 ABC transporter ABK1_3471 PF01053 Cys/Met metabolism PLP-dependent enzyme ABK1_3472 PF00106 short chain dehydrogenase ABK1_3473 PF00916 Sulfate permease family ABK1_3473 PF01740 STAS domain ABK1_3474 PF17674 HHH domain ABK1_3474 PF16921 Tex protein YqgF-like domain ABK1_3474 PF09371 Tex-like protein N-terminal domain ABK1_3474 PF00575 S1 RNA binding domain ABK1_3475 PF00486 Transcriptional regulatory protein, C terminal ABK1_3475 PF00072 Response regulator receiver domain ABK1_3476 PF00512 His Kinase A (phospho-acceptor) domain ABK1_3476 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ABK1_3476 PF00672 HAMP domain ABK1_3477 PF02550 Acetyl-CoA hydrolase/transferase N-terminal domain ABK1_3477 PF13336 Acetyl-CoA hydrolase/transferase C-terminal domain ABK1_3478 PF00583 Acetyltransferase (GNAT) family ABK1_3480 PF00475 Imidazoleglycerol-phosphate dehydratase ABK1_3481 PF00117 Glutamine amidotransferase class-I ABK1_3484 PF00977 Histidine biosynthesis protein ABK1_3489 PF01636 Phosphotransferase enzyme family ABK1_3490 PF00977 Histidine biosynthesis protein ABK1_3493 PF00230 Major intrinsic protein ABK1_3498 PF02705 K+ potassium transporter ABK1_3499 PF12833 Helix-turn-helix domain ABK1_3503 PF02525 Flavodoxin-like fold ABK1_3504 PF01638 HxlR-like helix-turn-helix ABK1_3507 PF13737 Transposase DDE domain ABK1_3509 PF01638 HxlR-like helix-turn-helix ABK1_3512 PF02311 AraC-like ligand binding domain ABK1_3512 PF12833 Helix-turn-helix domain ABK1_3513 PF00248 Aldo/keto reductase family ABK1_3518 PF03466 LysR substrate binding domain ABK1_3518 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ABK1_3519 PF07690 Major Facilitator Superfamily ABK1_3522 PF01593 Flavin containing amine oxidoreductase ABK1_3523 PF02678 Pirin ABK1_3523 PF05726 Pirin C-terminal cupin domain ABK1_3524 PF00857 Isochorismatase family ABK1_3525 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ABK1_3526 PF00171 Aldehyde dehydrogenase family ABK1_3527 PF00202 Aminotransferase class-III ABK1_3528 PF00392 Bacterial regulatory proteins, gntR family ABK1_3528 PF00155 Aminotransferase class I and II ABK1_3529 PF00324 Amino acid permease ABK1_3531 PF03591 AzlC protein ABK1_3533 PF00436 Single-strand binding protein family ABK1_3534 PF07690 Major Facilitator Superfamily ABK1_3536 PF02581 Thiamine monophosphate synthase ABK1_3536 PF03070 TENA/THI-4/PQQC family ABK1_3536 PF08543 Phosphomethylpyrimidine kinase ABK1_3537 PF06942 GlpM protein ABK1_3539 PF08240 Alcohol dehydrogenase GroES-like domain ABK1_3539 PF00107 Zinc-binding dehydrogenase ABK1_3540 PF16925 Tetracyclin repressor-like, C-terminal domain ABK1_3540 PF00440 Bacterial regulatory proteins, tetR family ABK1_3541 PF17760 UvrA interaction domain ABK1_3541 PF17755 UvrA DNA-binding domain ABK1_3541 PF00005 ABC transporter ABK1_3542 PF17158 Membrane-associated sensor, integral membrane domain ABK1_3542 PF00990 Diguanylate cyclase, GGDEF domain ABK1_3544 PF02028 BCCT, betaine/carnitine/choline family transporter ABK1_3546 PF00474 Sodium:solute symporter family ABK1_3547 PF04341 Protein of unknown function, DUF485 ABK1_3548 PF00672 HAMP domain ABK1_3548 PF01627 Hpt domain ABK1_3548 PF00072 Response regulator receiver domain ABK1_3548 PF00512 His Kinase A (phospho-acceptor) domain ABK1_3548 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ABK1_3550 PF00072 Response regulator receiver domain ABK1_3550 PF00196 Bacterial regulatory proteins, luxR family ABK1_3551 PF03358 NADPH-dependent FMN reductase ABK1_3552 PF00296 Luciferase-like monooxygenase ABK1_3553 PF01037 Lrp/AsnC ligand binding domain ABK1_3554 PF00857 Isochorismatase family ABK1_3555 PF16177 Acetyl-coenzyme A synthetase N-terminus ABK1_3555 PF00501 AMP-binding enzyme ABK1_3555 PF13193 AMP-binding enzyme C-terminal domain ABK1_3557 PF00924 Mechanosensitive ion channel ABK1_3558 PF04452 RNA methyltransferase ABK1_3559 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) ABK1_3560 PF00724 NADH:flavin oxidoreductase / NADH oxidase family ABK1_3562 PF00472 RF-1 domain ABK1_3562 PF03462 PCRF domain ABK1_3564 PF17768 RecJ OB domain ABK1_3564 PF02272 DHHA1 domain ABK1_3564 PF01368 DHH family ABK1_3565 PF01243 Pyridoxamine 5'-phosphate oxidase ABK1_3565 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region ABK1_3566 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I ABK1_3566 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II ABK1_3566 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III ABK1_3566 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain ABK1_3567 PF00571 CBS domain ABK1_3567 PF00478 IMP dehydrogenase / GMP reductase domain ABK1_3568 PF03692 Putative zinc- or iron-chelating domain ABK1_3569 PF00258 Flavodoxin ABK1_3569 PF01613 Flavin reductase like domain ABK1_3570 PF07715 TonB-dependent Receptor Plug Domain ABK1_3570 PF00593 TonB dependent receptor ABK1_3573 PF01169 Uncharacterized protein family UPF0016 ABK1_3575 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) ABK1_3575 PF00364 Biotin-requiring enzyme ABK1_3575 PF02817 e3 binding domain ABK1_3576 PF00456 Transketolase, thiamine diphosphate binding domain ABK1_3576 PF17831 Pyruvate dehydrogenase E1 component middle domain ABK1_3577 PF01551 Peptidase family M23 ABK1_3579 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase ABK1_3580 PF00091 Tubulin/FtsZ family, GTPase domain ABK1_3580 PF12327 FtsZ family, C-terminal domain ABK1_3581 PF02491 SHS2 domain inserted in FTSA ABK1_3582 PF03799 Cell division protein FtsQ ABK1_3582 PF08478 POTRA domain, FtsQ-type ABK1_3583 PF01820 D-ala D-ala ligase N-terminus ABK1_3583 PF07478 D-ala D-ala ligase C-terminus ABK1_3584 PF01225 Mur ligase family, catalytic domain ABK1_3584 PF02875 Mur ligase family, glutamate ligase domain ABK1_3584 PF08245 Mur ligase middle domain ABK1_3585 PF04101 Glycosyltransferase family 28 C-terminal domain ABK1_3585 PF03033 Glycosyltransferase family 28 N-terminal domain ABK1_3586 PF02951 Prokaryotic glutathione synthetase, N-terminal domain ABK1_3586 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain ABK1_3588 PF00593 TonB dependent receptor ABK1_3588 PF07715 TonB-dependent Receptor Plug Domain ABK1_3589 PF00156 Phosphoribosyl transferase domain ABK1_3590 PF03372 Endonuclease/Exonuclease/phosphatase family ABK1_3591 PF03960 ArsC family ABK1_3593 PF07859 alpha/beta hydrolase fold ABK1_3595 PF00990 Diguanylate cyclase, GGDEF domain ABK1_3595 PF07694 5TMR of 5TMR-LYT ABK1_3596 PF11412 Disulphide bond corrector protein DsbC ABK1_3596 PF02683 Cytochrome C biogenesis protein transmembrane region ABK1_3602 PF00576 HIUase/Transthyretin family ABK1_3603 PF00860 Permease family ABK1_3605 PF01494 FAD binding domain ABK1_3606 PF03561 Allantoicase repeat ABK1_3607 PF04115 Ureidoglycolate lyase ABK1_3608 PF00204 DNA gyrase B ABK1_3608 PF01751 Toprim domain ABK1_3608 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ABK1_3608 PF00986 DNA gyrase B subunit, carboxyl terminus ABK1_3609 PF05728 Uncharacterised protein family (UPF0227) ABK1_3614 PF00182 Chitinase class I ABK1_3615 PF04717 Type VI secretion system, phage-baseplate injector ABK1_3616 PF02600 Disulfide bond formation protein DsbB ABK1_3617 PF04262 Glutamate-cysteine ligase ABK1_3620 PF04286 Protein of unknown function (DUF445) ABK1_3621 PF00155 Aminotransferase class I and II ABK1_3622 PF01554 MatE ABK1_3623 PF00106 short chain dehydrogenase ABK1_3625 PF00486 Transcriptional regulatory protein, C terminal ABK1_3625 PF00072 Response regulator receiver domain ABK1_3626 PF00989 PAS fold ABK1_3626 PF00512 His Kinase A (phospho-acceptor) domain ABK1_3626 PF11808 Phosphate regulon sensor protein PhoR ABK1_3626 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ABK1_3628 PF13737 Transposase DDE domain ABK1_3630 PF03069 Acetamidase/Formamidase family ABK1_3631 PF02666 Phosphatidylserine decarboxylase ABK1_3632 PF00581 Rhodanese-like domain ABK1_3633 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain ABK1_3633 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family ABK1_3635 PF00199 Catalase ABK1_3635 PF06628 Catalase-related immune-responsive ABK1_3636 PF02580 D-Tyr-tRNA(Tyr) deacylase ABK1_3641 PF00925 GTP cyclohydrolase II ABK1_3641 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase ABK1_3642 PF00885 6,7-dimethyl-8-ribityllumazine synthase ABK1_3643 PF01029 NusB family ABK1_3644 PF02769 AIR synthase related protein, C-terminal domain ABK1_3644 PF00586 AIR synthase related protein, N-terminal domain ABK1_3646 PF04608 Phosphatidylglycerophosphatase A ABK1_3647 PF12804 MobA-like NTP transferase domain ABK1_3647 PF14602 Hexapeptide repeat of succinyl-transferase ABK1_3647 PF00132 Bacterial transferase hexapeptide (six repeats) ABK1_3648 PF01380 SIS domain ABK1_3649 PF01177 Asp/Glu/Hydantoin racemase ABK1_3650 PF13419 Haloacid dehalogenase-like hydrolase ABK1_3652 PF00491 Arginase family ABK1_3653 PF01979 Amidohydrolase family ABK1_3654 PF00324 Amino acid permease ABK1_3655 PF00221 Aromatic amino acid lyase ABK1_3656 PF17391 Urocanase N-terminal domain ABK1_3656 PF01175 Urocanase Rossmann-like domain ABK1_3656 PF17392 Urocanase C-terminal domain ABK1_3657 PF05962 HutD ABK1_3658 PF07702 UTRA domain ABK1_3658 PF00392 Bacterial regulatory proteins, gntR family ABK1_3660 PF07683 Cobalamin synthesis protein cobW C-terminal domain ABK1_3660 PF02492 CobW/HypB/UreG, nucleotide-binding domain ABK1_3662 PF00324 Amino acid permease ABK1_3664 PF02798 Glutathione S-transferase, N-terminal domain ABK1_3664 PF14497 Glutathione S-transferase, C-terminal domain ABK1_3665 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily ABK1_3667 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily ABK1_3668 PF04463 Protein of unknown function (DUF523) ABK1_3669 PF01554 MatE ABK1_3670 PF01758 Sodium Bile acid symporter family ABK1_3671 PF00857 Isochorismatase family ABK1_3672 PF00701 Dihydrodipicolinate synthetase family ABK1_3674 PF01259 SAICAR synthetase ABK1_3676 PF01226 Formate/nitrite transporter ABK1_3677 PF00004 ATPase family associated with various cellular activities (AAA) ABK1_3677 PF16193 AAA C-terminal domain ABK1_3677 PF12002 MgsA AAA+ ATPase C terminal ABK1_3678 PF07995 Glucose / Sorbosone dehydrogenase ABK1_3679 PF03692 Putative zinc- or iron-chelating domain ABK1_3680 PF07043 Protein of unknown function (DUF1328) ABK1_3683 PF10576 Iron-sulfur binding domain of endonuclease III ABK1_3683 PF00633 Helix-hairpin-helix motif ABK1_3683 PF14815 NUDIX domain ABK1_3683 PF00730 HhH-GPD superfamily base excision DNA repair protein ABK1_3687 PF03352 Methyladenine glycosylase ABK1_3688 PF08240 Alcohol dehydrogenase GroES-like domain ABK1_3688 PF00107 Zinc-binding dehydrogenase ABK1_3689 PF00392 Bacterial regulatory proteins, gntR family ABK1_3689 PF00155 Aminotransferase class I and II ABK1_3691 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ABK1_3691 PF03466 LysR substrate binding domain ABK1_3692 PF00248 Aldo/keto reductase family ABK1_3693 PF07690 Major Facilitator Superfamily ABK1_3695 PF05173 Dihydrodipicolinate reductase, C-terminus ABK1_3695 PF01113 Dihydrodipicolinate reductase, N-terminus ABK1_3697 PF01556 DnaJ C terminal domain ABK1_3697 PF00226 DnaJ domain ABK1_3697 PF00684 DnaJ central domain ABK1_3699 PF00873 AcrB/AcrD/AcrF family ABK1_3700 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion ABK1_3701 PF08361 MAATS-type transcriptional repressor, C-terminal region ABK1_3701 PF00440 Bacterial regulatory proteins, tetR family ABK1_3703 PF00311 Phosphoenolpyruvate carboxylase ABK1_3704 PF00860 Permease family ABK1_3705 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ABK1_3705 PF03466 LysR substrate binding domain ABK1_3708 PF00920 Dehydratase family ABK1_3709 PF00551 Formyl transferase ABK1_3709 PF02911 Formyl transferase, C-terminal domain ABK1_3710 PF01029 NusB family ABK1_3710 PF01189 16S rRNA methyltransferase RsmB/F ABK1_3712 PF00209 Sodium:neurotransmitter symporter family ABK1_3728 PF00226 DnaJ domain ABK1_3728 PF01556 DnaJ C terminal domain ABK1_3728 PF00684 DnaJ central domain ABK1_3736 PF18272 single-stranded DNA binding TraI N-terminal subdomain ABK1_3736 PF07057 DNA helicase TraI ABK1_3736 PF08751 TrwC relaxase ABK1_3736 PF18340 DNA relaxase TraI 2B/2B-like domain ABK1_3744 PF00239 Resolvase, N terminal domain ABK1_3744 PF02796 Helix-turn-helix domain of resolvase ABK1_3747 PF01464 Transglycosylase SLT domain ABK1_3754 PF10411 Disulfide bond isomerase protein N-terminus ABK1_3754 PF13098 Thioredoxin-like domain ABK1_3764 PF06986 Type-1V conjugative transfer system mating pair stabilisation ABK1_3767 PF06122 Conjugative relaxosome accessory transposon protein ABK1_3771 PF00817 impB/mucB/samB family ABK1_3771 PF13438 Domain of unknown function (DUF4113) ABK1_3771 PF11799 impB/mucB/samB family C-terminal domain ABK1_3793 PF00565 Staphylococcal nuclease homologue ABK1_3794 PF00816 H-NS histone family ABK1_3804 PF13614 AAA domain ABK1_3805 PF02195 ParB-like nuclease domain ABK1_3805 PF17762 HTH domain found in ParB protein ABK1_3809 PF05816 Toxic anion resistance protein (TelA) ABK1_3821 PF07715 TonB-dependent Receptor Plug Domain ABK1_3821 PF00593 TonB dependent receptor