locus-tag	class	description
ABK1_0001	COG0162	Catalyzes the attachment of tyrosine to tRNA(Tyr) in a two-step reaction tyrosine is first activated by ATP to form Tyr- AMP and then transferred to the acceptor end of tRNA(Tyr)
ABK1_0002	COG2377	Catalyzes the specific phosphorylation of 1,6-anhydro-N- acetylmuramic acid (anhMurNAc) with the simultaneous cleavage of the 1,6-anhydro ring, generating MurNAc-6-P. Is required for the utilization of anhMurNAc either imported from the medium or derived from its own cell wall murein, and thus plays a role in cell wall recycling
ABK1_0003	COG0596	Alpha beta hydrolase
ABK1_0008	COG0488	(ABC) transporter
ABK1_0009	COG0586	Pfam SNARE associated Golgi protein
ABK1_0011	COG0187	DNA topoisomerase II activity
ABK1_0013	COG0592	DNA-directed DNA polymerase activity
ABK1_0015	COG0230	Belongs to the bacterial ribosomal protein bL34 family
ABK1_0018	COG0706	membrane insertase activity
ABK1_0021	COG1230	cation diffusion facilitator family transporter
ABK1_0022	COG1651	Required for disulfide bond formation in some periplasmic proteins. Acts by transferring its disulfide bond to other proteins and is reduced in the process
ABK1_0025	COG0402	S-adenosylhomocysteine deaminase activity
ABK1_0027	COG0754	glutathionylspermidine amidase activity
ABK1_0029	COG0861	Integral membrane protein TerC family
ABK1_0030	COG0671	phosphoesterase, PA-phosphatase related
ABK1_0032	COG0773	UDP-N-acetylmuramate-L-alanine ligase activity
ABK1_0035	COG0026	Catalyzes the ATP-dependent conversion of 5- aminoimidazole ribonucleotide (AIR) and HCO(3)(-) to N5- carboxyaminoimidazole ribonucleotide (N5-CAIR)
ABK1_0036	COG2951	lytic endotransglycosylase activity
ABK1_0042	COG0583	DNA-binding transcription factor activity
ABK1_0047	COG0652	PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides
ABK1_0050	COG1047	Peptidyl-prolyl cis-trans
ABK1_0052	COG0060	amino acids such as valine, to avoid such errors it has two additional distinct tRNA(Ile)-dependent editing activities. One activity is designated as 'pretransfer' editing and involves the hydrolysis of activated Val-AMP. The other activity is designated 'posttransfer' editing and involves deacylation of mischarged Val-tRNA(Ile)
ABK1_0053	COG0196	riboflavin kinase activity
ABK1_0055	COG0775	Catalyzes the irreversible cleavage of the glycosidic bond in both 5'-methylthioadenosine (MTA) and S- adenosylhomocysteine (SAH AdoHcy) to adenine and the corresponding thioribose, 5'-methylthioribose and S-ribosylhomocysteine, respectively
ABK1_0056	COG1309	transcriptional regulator
ABK1_0057	COG1116	anion transmembrane transporter activity
ABK1_0058	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
ABK1_0059	COG2141	COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases
ABK1_0060	COG0715	COG0715 ABC-type nitrate sulfonate bicarbonate transport systems periplasmic components
ABK1_0061	COG0715	COG0715 ABC-type nitrate sulfonate bicarbonate transport systems periplasmic components
ABK1_0065	COG1028	Short-chain dehydrogenase reductase Sdr
ABK1_0066	COG0546	phosphoglycolate phosphatase activity
ABK1_0078	COG3023	N-Acetylmuramoyl-L-alanine amidase
ABK1_0079	COG0728	peptidoglycan biosynthetic process
ABK1_0085	COG0677	UDP-N-acetyl-D-mannosamine dehydrogenase activity
ABK1_0086	COG1086	Polysaccharide biosynthesis protein
ABK1_0087	COG0399	UDP-4-amino-4-deoxy-L-arabinose aminotransferase
ABK1_0088	COG1083	cytidylyl-transferase
ABK1_0091	COG2089	acid synthase
ABK1_0092	COG2244	polysaccharide biosynthetic process
ABK1_0096	COG1216	Glycosyl transferase, family 2
ABK1_0098	COG1216	Glycosyl transferase, family 2
ABK1_0099	COG2148	undecaprenyl-phosphate glucose phosphotransferase activity
ABK1_0100	COG1210	Utp--glucose-1-phosphate uridylyltransferase
ABK1_0103	COG1087	Belongs to the NAD(P)-dependent epimerase dehydratase family
ABK1_0104	COG1109	Catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate
ABK1_0106	COG2186	Transcriptional regulator
ABK1_0108	COG0277	FAD linked oxidase domain protein
ABK1_0109	COG1448	Aminotransferase
ABK1_0111	COG1802	Transcriptional regulator
ABK1_0114	COG1048	Catalyzes the isomerization of citrate to isocitrate via cis-aconitate
ABK1_0117	COG1051	belongs to the nudix hydrolase family
ABK1_0123	COG0564	pseudouridine synthase activity
ABK1_0128	COG1522	sequence-specific DNA binding
ABK1_0131	COG0251	oxidation-reduction process
ABK1_0132	COG1113	amino acid transport
ABK1_0133	COG1113	amino acid transport
ABK1_0137	COG0365	Catalyzes the conversion of acetate into acetyl-CoA (AcCoA), an essential intermediate at the junction of anabolic and catabolic pathways. AcsA undergoes a two-step reaction. In the first half reaction, AcsA combines acetate with ATP to form acetyl-adenylate (AcAMP) intermediate. In the second half reaction, it can then transfer the acetyl group from AcAMP to the sulfhydryl group of CoA, forming the product AcCoA
ABK1_0138	COG1960	acyl-CoA dehydrogenase activity
ABK1_0139	COG1024	Enoyl-CoA hydratase
ABK1_0140	COG1024	Enoyl-CoA hydratase
ABK1_0141	COG0477	Major facilitator Superfamily
ABK1_0142	COG3916	Acyl-homoserine-lactone synthase
ABK1_0144	COG2197	response regulator
ABK1_0146	COG2197	response regulator
ABK1_0148	COG1960	acyl-CoA dehydrogenase activity
ABK1_0149	COG3319	amino acid activation for nonribosomal peptide biosynthetic process
ABK1_0149	COG2227	3-demethylubiquinone-9 3-O-methyltransferase activity
ABK1_0149	COG3321	synthase
ABK1_0149	COG0236	Carrier of the growing fatty acid chain in fatty acid biosynthesis
ABK1_0153	COG2267	carboxylic ester hydrolase activity
ABK1_0155	COG0271	Belongs to the BolA IbaG family
ABK1_0157	COG1192	Involved in chromosome partitioning
ABK1_0160	COG0586	Pfam SNARE associated Golgi protein
ABK1_0161	COG2259	Doxx family
ABK1_0162	COG4399	Belongs to the UPF0754 family
ABK1_0163	COG0519	Catalyzes the synthesis of GMP from XMP
ABK1_0163	COG0518	GMP synthase (glutamine-hydrolyzing) activity
ABK1_0172	COG0281	malic enzyme
ABK1_0174	COG2837	iron assimilation
ABK1_0175	COG1280	lysine exporter protein (LysE YggA)
ABK1_0176	COG1108	ABC-type Mn2 Zn2 transport systems permease components
ABK1_0177	COG1121	(ABC) transporter
ABK1_0190	COG0386	Belongs to the glutathione peroxidase family
ABK1_0193	COG1309	transcriptional regulator
ABK1_0194	COG0697	spore germination
ABK1_0196	COG0758	DNA mediated transformation
ABK1_0203	COG1309	transcriptional regulator
ABK1_0205	COG0031	Belongs to the cysteine synthase cystathionine beta- synthase family
ABK1_0207	COG0655	NAD(P)H dehydrogenase (quinone) activity
ABK1_0214	COG0389	Poorly processive, error-prone DNA polymerase involved in untargeted mutagenesis. Copies undamaged DNA at stalled replication forks, which arise in vivo from mismatched or misaligned primer ends. These misaligned primers can be extended by PolIV. Exhibits no 3'-5' exonuclease (proofreading) activity. May be involved in translesional synthesis, in conjunction with the beta clamp from PolIII
ABK1_0216	COG2814	Major facilitator Superfamily
ABK1_0219	COG1253	flavin adenine dinucleotide binding
ABK1_0221	COG2860	membrane
ABK1_0222	COG0477	Major facilitator Superfamily
ABK1_0224	COG0318	PFAM AMP-dependent synthetase and ligase
ABK1_0227	COG0221	Catalyzes the hydrolysis of inorganic pyrophosphate (PPi) forming two phosphate ions
ABK1_0230	COG0329	Catalyzes the condensation of (S)-aspartate-beta- semialdehyde (S)-ASA and pyruvate to 4-hydroxy- tetrahydrodipicolinate (HTPA)
ABK1_0232	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
ABK1_0233	COG0606	chelatase, subunit chli
ABK1_0239	COG0589	response to stress
ABK1_0240	COG0659	secondary active sulfate transmembrane transporter activity
ABK1_0246	COG4973	Belongs to the 'phage' integrase family. XerC subfamily
ABK1_0268	COG0606	chelatase, subunit chli
ABK1_0270	COG0347	Belongs to the P(II) protein family
ABK1_0271	COG0004	ammonium transporteR
ABK1_0273	COG1985	Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'-phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)- pyrimidinedione 5'-phosphate
ABK1_0273	COG0117	Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'-phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)- pyrimidinedione 5'-phosphate
ABK1_0281	COG0795	lipopolysaccharide-transporting ATPase activity
ABK1_0282	COG0696	Catalyzes the interconversion of 2-phosphoglycerate and 3-phosphoglycerate
ABK1_0283	COG0793	Belongs to the peptidase S41A family
ABK1_0286	COG2197	response regulator
ABK1_0288	COG0498	Catalyzes the gamma-elimination of phosphate from L- phosphohomoserine and the beta-addition of water to produce L- threonine
ABK1_0290	COG1651	Required for disulfide bond formation in some periplasmic proteins. Acts by transferring its disulfide bond to other proteins and is reduced in the process
ABK1_0291	COG4974	Belongs to the 'phage' integrase family
ABK1_0296	COG0772	Belongs to the SEDS family
ABK1_0297	COG0008	Catalyzes the attachment of glutamate to tRNA(Glu) in a two-step reaction glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu)
ABK1_0298	COG1734	Transcription factor that acts by binding directly to the RNA polymerase (RNAP). Required for negative regulation of rRNA expression and positive regulation of several amino acid biosynthesis promoters
ABK1_0299	COG1409	Hydrolyzes cAMP to 5'-AMP. Plays an important regulatory role in modulating the intracellular concentration of cAMP, thereby influencing cAMP-dependent processes
ABK1_0304	COG0697	spore germination
ABK1_0305	COG1538	Outer membrane efflux protein
ABK1_0309	COG3275	phosphorelay sensor kinase activity
ABK1_0311	COG0181	hydroxymethylbilane synthase activity
ABK1_0320	COG1716	ATPase activity
ABK1_0321	COG0546	phosphoglycolate phosphatase activity
ABK1_0335	COG0596	Alpha beta hydrolase
ABK1_0336	COG2056	Na+-H+ antiporter family
ABK1_0339	COG0326	Molecular chaperone. Has ATPase activity
ABK1_0342	COG2761	dithiol-disulfide isomerase involved in polyketide biosynthesis
ABK1_0355	COG0558	Belongs to the CDP-alcohol phosphatidyltransferase class-I family
ABK1_0356	COG2169	Transcriptional regulator
ABK1_0356	COG0350	Involved in the cellular defense against the biological effects of O6-methylguanine (O6-MeG) and O4-methylthymine (O4-MeT) in DNA. Repairs the methylated nucleobase in DNA by stoichiometrically transferring the methyl group to a cysteine residue in the enzyme. This is a suicide reaction the enzyme is irreversibly inactivated
ABK1_0362	COG0816	Could be a nuclease involved in processing of the 5'-end of pre-16S rRNA
ABK1_0364	COG0497	DNA recombination
ABK1_0367	COG0566	Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family
ABK1_0369	COG0237	dephospho-CoA kinase activity
ABK1_0376	COG0195	Participates in both transcription termination and antitermination
ABK1_0380	COG2212	antiporter activity
ABK1_0382	COG0651	ATP synthesis coupled electron transport
ABK1_0383	COG1006	Multisubunit Na H antiporter MnhC subunit
ABK1_0384	COG1009	NADH ubiquinone oxidoreductase subunit 5 chain L Multisubunit Na H antiporter, MnhA subunit
ABK1_0384	COG2111	Na H antiporter
ABK1_0387	COG0139	Catalyzes the hydrolysis of the adenine ring of phosphoribosyl-AMP
ABK1_0388	COG0654	COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases
ABK1_0391	COG2226	methyltransferase
ABK1_0395	COG1330	A helicase nuclease that prepares dsDNA breaks (DSB) for recombinational DNA repair. Binds to DSBs and unwinds DNA via a highly rapid and processive ATP-dependent bidirectional helicase activity. Unwinds dsDNA until it encounters a Chi (crossover hotspot instigator) sequence from the 3' direction. Cuts ssDNA a few nucleotides 3' to the Chi site. The properties and activities of the enzyme are changed at Chi. The Chi-altered holoenzyme produces a long 3'-ssDNA overhang and facilitates RecA-binding to the ssDNA for homologous DNA recombination and repair. Holoenzyme degrades any linearized DNA that is unable to undergo homologous recombination. In the holoenzyme this subunit recognizes the wild- type Chi sequence, and when added to isolated RecB increases its ATP-dependent helicase processivity
ABK1_0396	COG1074	ATP-dependent DNA helicase activity
ABK1_0397	COG0507	A helicase nuclease that prepares dsDNA breaks (DSB) for recombinational DNA repair. Binds to DSBs and unwinds DNA via a highly rapid and processive ATP-dependent bidirectional helicase activity. Unwinds dsDNA until it encounters a Chi (crossover hotspot instigator) sequence from the 3' direction. Cuts ssDNA a few nucleotides 3' to the Chi site. The properties and activities of the enzyme are changed at Chi. The Chi-altered holoenzyme produces a long 3'-ssDNA overhang and facilitates RecA-binding to the ssDNA for homologous DNA recombination and repair. Holoenzyme degrades any linearized DNA that is unable to undergo homologous recombination. In the holoenzyme this subunit has ssDNA-dependent ATPase and 5'-3' helicase activity. When added to pre-assembled RecBC greatly stimulates nuclease activity and augments holoenzyme processivity. Negatively regulates the RecA-loading ability of RecBCD
ABK1_0401	COG0598	Magnesium transport protein CorA
ABK1_0402	COG0789	Transcriptional regulator
ABK1_0403	COG0484	heat shock protein binding
ABK1_0405	COG1281	Redox regulated molecular chaperone. Protects both thermally unfolding and oxidatively damaged proteins from irreversible aggregation. Plays an important role in the bacterial defense system toward oxidative stress
ABK1_0406	COG0475	glutathione-regulated potassium exporter activity
ABK1_0406	COG1226	(belongs to the monovalent cation proton antiporter 2 (CPA2) transporter (TC 2.A.37) family)
ABK1_0407	COG1198	Involved in the restart of stalled replication forks. Recognizes and binds the arrested nascent DNA chain at stalled replication forks. It can open the DNA duplex, via its helicase activity, and promote assembly of the primosome and loading of the major replicative helicase DnaB onto DNA
ABK1_0413	COG0073	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
ABK1_0415	COG4535	Mg2 and Co2 transporter CorC
ABK1_0416	COG0425	Belongs to the sulfur carrier protein TusA family
ABK1_0417	COG0644	oxidoreductase
ABK1_0417	COG2440	electron transfer flavoprotein-ubiquinone oxidoreductase
ABK1_0419	COG0796	Provides the (R)-glutamate required for cell wall biosynthesis
ABK1_0422	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
ABK1_0423	COG3024	Inhibits all the catalytic activities of DNA gyrase by preventing its interaction with DNA. Acts by binding directly to the C-terminal domain of GyrB, which probably disrupts DNA binding by the gyrase
ABK1_0430	COG0661	Is probably a protein kinase regulator of UbiI activity which is involved in aerobic coenzyme Q (ubiquinone) biosynthesis
ABK1_0433	COG0534	Mate efflux family protein
ABK1_0435	COG0635	Involved in the biosynthesis of porphyrin-containing compound
ABK1_0436	COG4221	oxidoreductase activity
ABK1_0437	COG0583	DNA-binding transcription factor activity
ABK1_0439	COG1530	ribonuclease E activity
ABK1_0442	COG0546	phosphoglycolate phosphatase activity
ABK1_0443	COG2378	regulation of single-species biofilm formation
ABK1_0445	COG0625	glutathione transferase activity
ABK1_0447	COG0583	DNA-binding transcription factor activity
ABK1_0460	COG0473	3-isopropylmalate dehydrogenase activity
ABK1_0471	COG1301	dicarboxylic acid transport
ABK1_0473	COG1560	Kdo2-lipid A biosynthetic process
ABK1_0474	COG1280	lysine exporter protein (LysE YggA)
ABK1_0478	COG1733	regulation of RNA biosynthetic process
ABK1_0483	COG0210	DNA helicase
ABK1_0484	COG0724	RNA recognition motif
ABK1_0488	COG4651	solute:proton antiporter activity
ABK1_0488	COG1226	(belongs to the monovalent cation proton antiporter 2 (CPA2) transporter (TC 2.A.37) family)
ABK1_0489	COG0267	Belongs to the bacterial ribosomal protein bL33 family
ABK1_0490	COG0227	Belongs to the bacterial ribosomal protein bL28 family
ABK1_0493	COG0788	formyltetrahydrofolate deformylase activity
ABK1_0513	COG2021	Transfers an acetyl group from acetyl-CoA to L- homoserine, forming acetyl-L-homoserine
ABK1_0513	COG2813	Specifically methylates the guanine in position
ABK1_0515	COG0119	Catalyzes the condensation of the acetyl group of acetyl-CoA with 3-methyl-2-oxobutanoate (2-oxoisovalerate) to form 3-carboxy-3-hydroxy-4-methylpentanoate (2-isopropylmalate)
ABK1_0517	COG4774	siderophore transport
ABK1_0519	COG0740	serine-type endopeptidase activity
ABK1_0523	COG1951	Catalyzes the reversible hydration of fumarate to (S)- malate
ABK1_0523	COG1838	Catalyzes the reversible hydration of fumarate to (S)- malate
ABK1_0524	COG0857	belongs to the CobB CobQ family
ABK1_0524	COG0280	phosphate acetyltransferase
ABK1_0525	COG0282	Catalyzes the formation of acetyl phosphate from acetate and ATP. Can also catalyze the reverse reaction
ABK1_0527	COG0800	Aldolase
ABK1_0529	COG3265	gluconokinase activity
ABK1_0530	COG1012	belongs to the aldehyde dehydrogenase family
ABK1_0532	COG2267	carboxylic ester hydrolase activity
ABK1_0535	COG0793	Belongs to the peptidase S41A family
ABK1_0542	COG1426	Protein conserved in bacteria
ABK1_0552	COG0236	Carrier of the growing fatty acid chain in fatty acid biosynthesis
ABK1_0553	COG0236	Carrier of the growing fatty acid chain in fatty acid biosynthesis
ABK1_0555	COG0318	PFAM AMP-dependent synthetase and ligase
ABK1_0559	COG2986	histidine ammonia-lyase
ABK1_0567	COG1028	Short-chain dehydrogenase reductase Sdr
ABK1_0568	COG0304	beta-ketoacyl-acyl-carrier-protein synthase II activity
ABK1_0572	COG0695	Has a glutathione-disulfide oxidoreductase activity in the presence of NADPH and glutathione reductase. Reduces low molecular weight disulfides and proteins
ABK1_0574	COG1162	GTPase activity
ABK1_0575	COG1949	3'-to-5' exoribonuclease specific for small oligoribonucleotides
ABK1_0578	COG1538	Outer membrane efflux protein
ABK1_0579	COG0577	efflux transmembrane transporter activity
ABK1_0579	COG1136	(ABC) transporter
ABK1_0580	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
ABK1_0585	COG0028	Belongs to the TPP enzyme family
ABK1_0586	COG0440	acetolactate synthase activity
ABK1_0593	COG4108	Increases the formation of ribosomal termination complexes and stimulates activities of RF-1 and RF-2. It binds guanine nucleotides and has strong preference for UGA stop codons. It may interact directly with the ribosome. The stimulation of RF- 1 and RF-2 is significantly reduced by GTP and GDP, but not by GMP
ABK1_0596	COG0084	hydrolase, TatD family'
ABK1_0599	COG1179	involved in molybdopterin and THIamine biosynthesis family 1
ABK1_0601	COG0583	DNA-binding transcription factor activity
ABK1_0603	COG0042	Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines
ABK1_0604	COG2814	Major facilitator Superfamily
ABK1_0606	COG0697	spore germination
ABK1_0607	COG3288	NAD(P)+ transhydrogenase (AB-specific) activity
ABK1_0608	COG3288	NAD(P)+ transhydrogenase (AB-specific) activity
ABK1_0609	COG1282	The transhydrogenation between NADH and NADP is coupled to respiration and ATP hydrolysis and functions as a proton pump across the membrane
ABK1_0612	COG3622	Belongs to the hyi family
ABK1_0613	COG2084	Dehydrogenase
ABK1_0614	COG1024	Enoyl-CoA hydratase
ABK1_0615	COG2205	protein histidine kinase activity
ABK1_0615	COG0784	Response regulator, receiver
ABK1_0615	COG5002	protein histidine kinase activity
ABK1_0619	COG0317	In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance
ABK1_0621	COG3956	TIGRFAM MazG family protein
ABK1_0622	COG1555	photosystem II stabilization
ABK1_0623	COG0617	tRNA 3'-terminal CCA addition
ABK1_0624	COG0801	2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase
ABK1_0628	COG1925	phosphoenolpyruvate-dependent sugar phosphotransferase system
ABK1_0629	COG3028	Belongs to the UPF0307 family
ABK1_0630	COG0318	PFAM AMP-dependent synthetase and ligase
ABK1_0633	COG0625	glutathione transferase activity
ABK1_0634	COG1238	metal cluster binding
ABK1_0637	COG0292	Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit
ABK1_0642	COG0072	phenylalanine-tRNA ligase activity
ABK1_0647	COG0248	Ppx GppA phosphatase
ABK1_0649	COG0037	tRNA processing
ABK1_0657	COG1764	response to oxidative stress
ABK1_0658	COG1846	Transcriptional regulator
ABK1_0660	COG0388	Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source
ABK1_0667	COG0766	Cell wall formation. Adds enolpyruvyl to UDP-N- acetylglucosamine
ABK1_0668	COG0040	Catalyzes the condensation of ATP and 5-phosphoribose 1- diphosphate to form N'-(5'-phosphoribosyl)-ATP (PR-ATP). Has a crucial role in the pathway because the rate of histidine biosynthesis seems to be controlled primarily by regulation of hisG enzymatic activity
ABK1_0669	COG0141	Catalyzes the sequential NAD-dependent oxidations of L- histidinol to L-histidinaldehyde and then to L-histidine
ABK1_0671	COG0147	Part of a heterotetrameric complex that catalyzes the two-step biosynthesis of anthranilate, an intermediate in the biosynthesis of L-tryptophan. In the first step, the glutamine- binding beta subunit (TrpG) of anthranilate synthase (AS) provides the glutamine amidotransferase activity which generates ammonia as a substrate that, along with chorismate, is used in the second step, catalyzed by the large alpha subunit of AS (TrpE) to produce anthranilate. In the absence of TrpG, TrpE can synthesize anthranilate directly from chorismate and high concentrations of ammonia
ABK1_0681	COG1214	PFAM Peptidase M22, glycoprotease
ABK1_0684	COG0627	Serine hydrolase involved in the detoxification of formaldehyde
ABK1_0686	COG0036	Belongs to the ribulose-phosphate 3-epimerase family
ABK1_0687	COG0561	phosphatase activity
ABK1_0689	COG2132	Multicopper oxidase
ABK1_0690	COG3667	copper resistance
ABK1_0693	COG0350	Involved in the cellular defense against the biological effects of O6-methylguanine (O6-MeG) and O4-methylthymine (O4-MeT) in DNA. Repairs the methylated nucleobase in DNA by stoichiometrically transferring the methyl group to a cysteine residue in the enzyme. This is a suicide reaction the enzyme is irreversibly inactivated
ABK1_0694	COG1364	Catalyzes two activities which are involved in the cyclic version of arginine biosynthesis the synthesis of N- acetylglutamate from glutamate and acetyl-CoA as the acetyl donor, and of ornithine by transacetylation between N(2)-acetylornithine and glutamate
ABK1_0695	COG0379	Catalyzes the condensation of iminoaspartate with dihydroxyacetone phosphate to form quinolinate
ABK1_0697	COG1063	alcohol dehydrogenase
ABK1_0698	COG0583	DNA-binding transcription factor activity
ABK1_0699	COG1960	acyl-CoA dehydrogenase activity
ABK1_0700	COG2814	Major facilitator Superfamily
ABK1_0701	COG1804	L-carnitine dehydratase bile acid-inducible protein F
ABK1_0703	COG1053	succinate dehydrogenase
ABK1_0704	COG0583	DNA-binding transcription factor activity
ABK1_0707	COG0583	DNA-binding transcription factor activity
ABK1_0709	COG1473	amidohydrolase
ABK1_0713	COG0583	DNA-binding transcription factor activity
ABK1_0715	COG0620	Catalyzes the transfer of a methyl group from 5- methyltetrahydrofolate to homocysteine resulting in methionine formation
ABK1_0716	COG1853	conserved protein domain typically associated with flavoprotein oxygenases, DIM6 NTAB family
ABK1_0720	COG0384	phenazine biosynthesis protein PhzF
ABK1_0725	COG4993	Dehydrogenase
ABK1_0738	COG2205	protein histidine kinase activity
ABK1_0741	COG0208	Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides
ABK1_0744	COG0745	RESPONSE REGULATOR receiver
ABK1_0745	COG2205	protein histidine kinase activity
ABK1_0752	COG1894	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain
ABK1_0758	COG1009	NADH ubiquinone oxidoreductase subunit 5 chain L Multisubunit Na H antiporter, MnhA subunit
ABK1_0759	COG1008	NDH-1 shuttles electrons from NAD(P)H, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be plastoquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient
ABK1_0763	COG0583	DNA-binding transcription factor activity
ABK1_0767	COG0668	transmembrane transport
ABK1_0769	COG2081	HI0933 family
ABK1_0770	COG2515	1-aminocyclopropane-1-carboxylate deaminase
ABK1_0776	COG0143	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
ABK1_0776	COG0073	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
ABK1_0778	COG0489	protein tyrosine kinase activity
ABK1_0788	COG0042	Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines
ABK1_0790	COG0541	Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Binds to the hydrophobic signal sequence of the ribosome-nascent chain (RNC) as it emerges from the ribosomes. The SRP-RNC complex is then targeted to the cytoplasmic membrane where it interacts with the SRP receptor FtsY
ABK1_0793	COG0730	response to heat
ABK1_0795	COG1196	nuclear chromosome segregation
ABK1_0799	COG2223	nitrite transmembrane transporter activity
ABK1_0800	COG0380	Probably involved in the osmoprotection via the biosynthesis of trehalose. Catalyzes the transfer of glucose from UDP-glucose (UDP-Glc) to D-glucose 6-phosphate (Glc-6-P) to form trehalose-6-phosphate. Acts with retention of the anomeric configuration of the UDP-sugar donor
ABK1_0801	COG1877	trehalose-phosphatase activity
ABK1_0802	COG2021	Transfers an acetyl group from acetyl-CoA to L- homoserine, forming acetyl-L-homoserine
ABK1_0802	COG0596	Alpha beta hydrolase
ABK1_0802	COG2226	methyltransferase
ABK1_0805	COG4106	trans-aconitate 2-methyltransferase activity
ABK1_0808	COG1386	Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpA that pull DNA away from mid-cell into both cell halves
ABK1_0809	COG1354	Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpB that pull DNA away from mid-cell into both cell halves
ABK1_0810	COG0009	L-threonylcarbamoyladenylate synthase
ABK1_0811	COG3101	peptidyl-lysine hydroxylation
ABK1_0812	COG1399	metal-binding, possibly nucleic acid-binding protein
ABK1_0817	COG1652	LysM domain
ABK1_0818	COG0819	Catalyzes an amino-pyrimidine hydrolysis reaction at the C5' of the pyrimidine moiety of thiamine compounds, a reaction that is part of a thiamine salvage pathway
ABK1_0818	COG0352	thiamine-phosphate diphosphorylase activity
ABK1_0818	COG0351	phosphomethylpyrimidine kinase
ABK1_0820	COG0108	Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate
ABK1_0826	COG0462	Involved in the biosynthesis of the central metabolite phospho-alpha-D-ribosyl-1-pyrophosphate (PRPP) via the transfer of pyrophosphoryl group from ATP to 1-hydroxyl of ribose-5-phosphate (Rib-5-P)
ABK1_0827	COG3017	Plays a critical role in the incorporation of lipoproteins in the outer membrane after they are released by the LolA protein
ABK1_0830	COG0358	DNA primase activity
ABK1_0832	COG0564	pseudouridine synthase activity
ABK1_0837	COG1145	4fe-4S ferredoxin, iron-sulfur binding domain protein
ABK1_0839	COG0583	DNA-binding transcription factor activity
ABK1_0840	COG0473	3-isopropylmalate dehydrogenase activity
ABK1_0844	COG1012	belongs to the aldehyde dehydrogenase family
ABK1_0847	COG0388	Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source
ABK1_0847	COG0171	NAD+ synthase (glutamine-hydrolyzing) activity
ABK1_0859	COG0456	acetyltransferase
ABK1_0861	COG2360	Functions in the N-end rule pathway of protein degradation where it conjugates Leu, Phe and, less efficiently, Met from aminoacyl-tRNAs to the N-termini of proteins containing an N-terminal arginine or lysine
ABK1_0862	COG0492	ferredoxin-NADP+ reductase activity
ABK1_0863	COG3087	Lytic transglycosylase with a strong preference for naked glycan strands that lack stem peptides
ABK1_0863	COG1674	ftsk spoiiie
ABK1_0864	COG1280	lysine exporter protein (LysE YggA)
ABK1_0868	COG2894	cell division
ABK1_0871	COG0204	Acyl-transferase
ABK1_0872	COG2885	chlorophyll binding
ABK1_0873	COG0210	DNA helicase
ABK1_0875	COG1109	Catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate
ABK1_0878	COG0121	glutamine amidotransferase
ABK1_0882	COG2913	Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane
ABK1_0883	COG0735	belongs to the Fur family
ABK1_0888	COG0420	3'-5' exonuclease activity
ABK1_0892	COG1090	epimerase
ABK1_0895	COG2050	protein possibly involved in aromatic compounds catabolism
ABK1_0897	COG2814	Major facilitator Superfamily
ABK1_0898	COG0405	Gamma-glutamyltransferase
ABK1_0903	COG0477	Major facilitator Superfamily
ABK1_0904	COG0329	Catalyzes the condensation of (S)-aspartate-beta- semialdehyde (S)-ASA and pyruvate to 4-hydroxy- tetrahydrodipicolinate (HTPA)
ABK1_0909	COG0531	amino acid
ABK1_0910	COG2040	homocysteine
ABK1_0915	COG1309	transcriptional regulator
ABK1_0916	COG1292	Belongs to the BCCT transporter (TC 2.A.15) family
ABK1_0917	COG1292	Belongs to the BCCT transporter (TC 2.A.15) family
ABK1_0919	COG1607	acyl-coa hydrolase
ABK1_0921	COG0523	cobalamin synthesis protein
ABK1_0923	COG4681	YaeQ
ABK1_0925	COG1649	PFAM Uncharacterised BCR, COG1649
ABK1_0925	COG0726	polysaccharide deacetylase
ABK1_0926	COG1215	transferase activity, transferring glycosyl groups
ABK1_0928	COG1024	Enoyl-CoA hydratase
ABK1_0931	COG1414	Transcriptional regulator
ABK1_0934	COG1028	Short-chain dehydrogenase reductase Sdr
ABK1_0936	COG0446	pyridine nucleotide-disulphide oxidoreductase
ABK1_0937	COG2271	Major facilitator Superfamily
ABK1_0939	COG2267	carboxylic ester hydrolase activity
ABK1_0940	COG1028	Short-chain dehydrogenase reductase Sdr
ABK1_0943	COG0028	Belongs to the TPP enzyme family
ABK1_0945	COG0477	Major facilitator Superfamily
ABK1_0947	COG0242	peptide deformylase activity
ABK1_0948	COG2066	Belongs to the glutaminase family
ABK1_0949	COG2223	nitrite transmembrane transporter activity
ABK1_0952	COG0583	DNA-binding transcription factor activity
ABK1_0953	COG1028	Short-chain dehydrogenase reductase Sdr
ABK1_0954	COG2271	Major facilitator Superfamily
ABK1_0955	COG3959	Transketolase, thiamine diphosphate binding domain
ABK1_0956	COG3958	Transketolase
ABK1_0959	COG0306	phosphate transporter
ABK1_0963	COG1262	PFAM Formylglycine-generating sulfatase enzyme
ABK1_0972	COG4181	ATPase activity
ABK1_0973	COG3127	ABC-type transport system involved in lysophospholipase L1, biosynthesis, permease component
ABK1_0978	COG0583	DNA-binding transcription factor activity
ABK1_0980	COG1251	Belongs to the nitrite and sulfite reductase 4Fe-4S domain family
ABK1_0981	COG1773	rubredoxin
ABK1_0990	COG2851	Citrate transporter
ABK1_0992	COG1253	flavin adenine dinucleotide binding
ABK1_1001	COG0804	urea catabolic process
ABK1_1003	COG0830	nickel cation binding
ABK1_1006	COG0742	ribosomal rna small subunit methyltransferase
ABK1_1007	COG0768	penicillin binding
ABK1_1011	COG0177	DNA repair enzyme that has both DNA N-glycosylase activity and AP-lyase activity. The DNA N-glycosylase activity releases various damaged pyrimidines from DNA by cleaving the N- glycosidic bond, leaving an AP (apurinic apyrimidinic) site. The AP-lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination, leaving a 3'-terminal unsaturated sugar and a product with a terminal 5'-phosphate
ABK1_1012	COG2878	Part of a membrane complex involved in electron transport
ABK1_1013	COG0334	Belongs to the Glu Leu Phe Val dehydrogenases family
ABK1_1015	COG3384	dioxygenase
ABK1_1020	COG0212	Belongs to the 5-formyltetrahydrofolate cyclo-ligase family
ABK1_1081	COG0739	heme binding
ABK1_1092	COG2194	sulfuric ester hydrolase activity
ABK1_1098	COG0006	proline dipeptidase activity
ABK1_1099	COG0654	COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases
ABK1_1100	COG0654	COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases
ABK1_1105	COG1279	arginine transmembrane transporter activity
ABK1_1106	COG0583	DNA-binding transcription factor activity
ABK1_1114	COG0847	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. The epsilon subunit contain the editing function and is a proofreading 3'-5' exonuclease
ABK1_1115	COG1388	LysM domain
ABK1_1115	COG0741	lytic transglycosylase activity
ABK1_1115	COG1388	LysM domain
ABK1_1115	COG0741	lytic transglycosylase activity
ABK1_1117	COG4174	ABC transporter (Permease)
ABK1_1118	COG4239	(ABC) transporter, permease
ABK1_1119	COG4172	Belongs to the ABC transporter superfamily
ABK1_1122	COG0847	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. The epsilon subunit contain the editing function and is a proofreading 3'-5' exonuclease
ABK1_1124	COG3706	GGDEF domain
ABK1_1124	COG2203	Gaf domain
ABK1_1124	COG5001	Diguanylate cyclase
ABK1_1124	COG4251	negative regulation of phosphorylation
ABK1_1126	COG1902	pentaerythritol trinitrate reductase activity
ABK1_1126	COG0446	pyridine nucleotide-disulphide oxidoreductase
ABK1_1128	COG4269	membrane
ABK1_1133	COG3501	Rhs element vgr protein
ABK1_1136	COG3316	Transposase and inactivated derivatives
ABK1_1147	COG3316	Transposase and inactivated derivatives
ABK1_1149	COG3316	Transposase and inactivated derivatives
ABK1_1152	COG0685	methylenetetrahydrofolate reductase (NAD(P)H) activity
ABK1_1153	COG0499	May play a key role in the regulation of the intracellular concentration of adenosylhomocysteine
ABK1_1156	COG1960	acyl-CoA dehydrogenase activity
ABK1_1157	COG0320	Catalyzes the radical-mediated insertion of two sulfur atoms into the C-6 and C-8 positions of the octanoyl moiety bound to the lipoyl domains of lipoate-dependent enzymes, thereby converting the octanoylated domains into lipoylated derivatives
ABK1_1158	COG1249	Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family
ABK1_1160	COG2223	nitrite transmembrane transporter activity
ABK1_1162	COG0024	Methionine aminopeptidase
ABK1_1163	COG0052	Belongs to the universal ribosomal protein uS2 family
ABK1_1166	COG2207	Transcriptional regulator
ABK1_1171	COG2951	lytic endotransglycosylase activity
ABK1_1172	COG0772	Belongs to the SEDS family
ABK1_1175	COG0842	Transport permease protein
ABK1_1176	COG1131	(ABC) transporter
ABK1_1182	COG1538	Outer membrane efflux protein
ABK1_1184	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
ABK1_1187	COG4215	(ABC) transporter
ABK1_1188	COG4160	amino acid transport
ABK1_1189	COG4598	ABC transporter
ABK1_1191	COG1145	4fe-4S ferredoxin, iron-sulfur binding domain protein
ABK1_1193	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
ABK1_1196	COG1720	tRNA m6t6A37 methyltransferase activity
ABK1_1200	COG0745	RESPONSE REGULATOR receiver
ABK1_1201	COG0642	Histidine kinase
ABK1_1203	COG0494	nUDIX hydrolase
ABK1_1205	COG0744	Peptidoglycan polymerase that catalyzes glycan chain elongation from lipid-linked precursors
ABK1_1206	COG0061	Involved in the regulation of the intracellular balance of NAD and NADP, and is a key enzyme in the biosynthesis of NADP. Catalyzes specifically the phosphorylation on 2'-hydroxyl of the adenosine moiety of NAD to yield NADP
ABK1_1207	COG3139	Protein of unknown function (DUF1315)
ABK1_1208	COG0547	Catalyzes the transfer of the phosphoribosyl group of 5- phosphorylribose-1-pyrophosphate (PRPP) to anthranilate to yield N-(5'-phosphoribosyl)-anthranilate (PRA)
ABK1_1209	COG1301	dicarboxylic acid transport
ABK1_1210	COG1960	acyl-CoA dehydrogenase activity
ABK1_1211	COG2819	hydrolase of the alpha beta superfamily
ABK1_1213	COG0128	3-phosphoshikimate 1-carboxyvinyltransferase activity
ABK1_1215	COG2195	Cleaves the N-terminal amino acid of tripeptides
ABK1_1216	COG1234	tRNA 3'-trailer cleavage
ABK1_1222	COG2363	Small membrane protein
ABK1_1226	COG0513	Belongs to the DEAD box helicase family
ABK1_1228	COG0778	Nitroreductase
ABK1_1239	COG4783	chaperone-mediated protein folding
ABK1_1240	COG1610	YqeY-like protein
ABK1_1241	COG0828	Belongs to the bacterial ribosomal protein bS21 family
ABK1_1257	COG3111	PFAM Bacterial OB fold (BOF) protein
ABK1_1262	COG3243	poly(R)-hydroxyalkanoic acid synthase
ABK1_1263	COG0786	glutamate:sodium symporter activity
ABK1_1265	COG2186	Transcriptional regulator
ABK1_1278	COG0477	Major facilitator Superfamily
ABK1_1282	COG2985	domain, Protein
ABK1_1284	COG2995	paraquat-inducible protein a
ABK1_1285	COG3008	intermembrane lipid transfer
ABK1_1285	COG1463	ABC-type transport system involved in resistance to organic solvents, periplasmic component
ABK1_1287	COG1794	racemase activity, acting on amino acids and derivatives
ABK1_1293	COG1301	dicarboxylic acid transport
ABK1_1295	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
ABK1_1296	COG2011	ABC-type metal ion transport system permease component
ABK1_1297	COG1135	Part of the ABC transporter complex MetNIQ involved in methionine import. Responsible for energy coupling to the transport system
ABK1_1298	COG1464	Belongs to the NlpA lipoprotein family
ABK1_1299	COG0151	Belongs to the GarS family
ABK1_1300	COG0138	bifunctional purine biosynthesis protein purh
ABK1_1301	COG2901	Activates ribosomal RNA transcription. Plays a direct role in upstream activation of rRNA promoters
ABK1_1308	COG2308	Evidence 4 Homologs of previously reported genes of
ABK1_1310	COG1305	Transglutaminase-like
ABK1_1312	COG0787	Catalyzes the interconversion of L-alanine and D- alanine. May also act on other amino acids
ABK1_1313	COG0305	Participates in initiation and elongation during chromosome replication
ABK1_1318	COG3125	oxidoreductase activity, acting on diphenols and related substances as donors, oxygen as acceptor
ABK1_1320	COG0843	Cytochrome c oxidase is the component of the respiratory chain that catalyzes the reduction of oxygen to water. Subunits 1- 3 form the functional core of the enzyme complex. CO I is the catalytic subunit of the enzyme. Electrons originating in cytochrome c are transferred via the copper A center of subunit 2 and heme A of subunit 1 to the bimetallic center formed by heme A3 and copper B
ABK1_1321	COG1622	oxidoreductase activity, acting on a heme group of donors, oxygen as acceptor
ABK1_1326	COG0726	polysaccharide deacetylase
ABK1_1326	COG1649	PFAM Uncharacterised BCR, COG1649
ABK1_1327	COG1215	transferase activity, transferring glycosyl groups
ABK1_1328	COG3658	cytochrome
ABK1_1330	COG2141	COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases
ABK1_1333	COG0583	DNA-binding transcription factor activity
ABK1_1337	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
ABK1_1338	COG0715	COG0715 ABC-type nitrate sulfonate bicarbonate transport systems periplasmic components
ABK1_1341	COG1960	acyl-CoA dehydrogenase activity
ABK1_1342	COG0365	Catalyzes the conversion of acetate into acetyl-CoA (AcCoA), an essential intermediate at the junction of anabolic and catabolic pathways. AcsA undergoes a two-step reaction. In the first half reaction, AcsA combines acetate with ATP to form acetyl-adenylate (AcAMP) intermediate. In the second half reaction, it can then transfer the acetyl group from AcAMP to the sulfhydryl group of CoA, forming the product AcCoA
ABK1_1343	COG1853	conserved protein domain typically associated with flavoprotein oxygenases, DIM6 NTAB family
ABK1_1348	COG2060	Part of the high-affinity ATP-driven potassium transport (or Kdp) system, which catalyzes the hydrolysis of ATP coupled with the electrogenic transport of potassium into the cytoplasm. This subunit binds and transports the potassium across the cytoplasmic membrane
ABK1_1349	COG2216	Part of the high-affinity ATP-driven potassium transport (or Kdp) system, which catalyzes the hydrolysis of ATP coupled with the electrogenic transport of potassium into the cytoplasm. This subunit is responsible for energy coupling to the transport system
ABK1_1351	COG2205	protein histidine kinase activity
ABK1_1352	COG0745	RESPONSE REGULATOR receiver
ABK1_1353	COG0174	glutamine synthetase
ABK1_1360	COG0776	regulation of translation
ABK1_1378	COG4373	Mu-like prophage FluMu protein gp28
ABK1_1381	COG4383	Mu-like prophage protein gp29
ABK1_1382	COG2369	cell adhesion
ABK1_1383	COG5005	Phage virion morphogenesis
ABK1_1386	COG4397	Mu-like prophage major head subunit gpT
ABK1_1407	COG0729	surface antigen
ABK1_1412	COG0664	- Catabolite gene activator and regulatory subunit of cAMP-dependent protein
ABK1_1413	COG2814	Major facilitator Superfamily
ABK1_1416	COG0583	DNA-binding transcription factor activity
ABK1_1419	COG1187	pseudouridine synthase activity
ABK1_1423	COG0802	atpase or kinase
ABK1_1424	COG0323	This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. May act as a molecular matchmaker , a protein that promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex
ABK1_1426	COG1923	regulation of RNA biosynthetic process
ABK1_1427	COG0697	spore germination
ABK1_1429	COG2908	Hydrolyzes the pyrophosphate bond of UDP-2,3- diacylglucosamine to yield 2,3-diacylglucosamine 1-phosphate (lipid X) and UMP by catalyzing the attack of water at the alpha-P atom. Involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell
ABK1_1432	COG0518	GMP synthase (glutamine-hydrolyzing) activity
ABK1_1432	COG0519	Catalyzes the synthesis of GMP from XMP
ABK1_1433	COG4302	ethanolamine ammonia-lyase activity
ABK1_1434	COG4303	Ethanolamine ammonia lyase large subunit
ABK1_1435	COG0531	amino acid
ABK1_1439	COG1454	alcohol dehydrogenase
ABK1_1440	COG0507	A helicase nuclease that prepares dsDNA breaks (DSB) for recombinational DNA repair. Binds to DSBs and unwinds DNA via a highly rapid and processive ATP-dependent bidirectional helicase activity. Unwinds dsDNA until it encounters a Chi (crossover hotspot instigator) sequence from the 3' direction. Cuts ssDNA a few nucleotides 3' to the Chi site. The properties and activities of the enzyme are changed at Chi. The Chi-altered holoenzyme produces a long 3'-ssDNA overhang and facilitates RecA-binding to the ssDNA for homologous DNA recombination and repair. Holoenzyme degrades any linearized DNA that is unable to undergo homologous recombination. In the holoenzyme this subunit has ssDNA-dependent ATPase and 5'-3' helicase activity. When added to pre-assembled RecBC greatly stimulates nuclease activity and augments holoenzyme processivity. Negatively regulates the RecA-loading ability of RecBCD
ABK1_1442	COG3449	Inhibits the supercoiling activity of DNA gyrase. Acts by inhibiting DNA gyrase at an early step, prior to (or at the step of) binding of DNA by the gyrase. It protects cells against toxins that target DNA gyrase, by inhibiting activity of these toxins and reducing the formation of lethal double-strand breaks in the cell
ABK1_1446	COG0308	aminopeptidase N
ABK1_1448	COG4221	oxidoreductase activity
ABK1_1450	COG1605	Chorismate mutase
ABK1_1453	COG1309	transcriptional regulator
ABK1_1456	COG0668	transmembrane transport
ABK1_1461	COG4773	Receptor
ABK1_1466	COG0488	(ABC) transporter
ABK1_1467	COG0589	response to stress
ABK1_1471	COG0474	ATPase, P-type transporting, HAD superfamily, subfamily IC
ABK1_1473	COG3135	benzoate transporter
ABK1_1474	COG1522	sequence-specific DNA binding
ABK1_1477	COG0583	DNA-binding transcription factor activity
ABK1_1479	COG0183	Belongs to the thiolase family
ABK1_1485	COG2812	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity
ABK1_1488	COG0824	Thioesterase
ABK1_1489	COG1454	alcohol dehydrogenase
ABK1_1491	COG0394	Belongs to the low molecular weight phosphotyrosine protein phosphatase family
ABK1_1495	COG0069	glutamate synthase activity
ABK1_1532	COG5410	chromosome segregation
ABK1_1554	COG1598	PFAM Uncharacterised protein family UPF0150
ABK1_1559	COG0739	heme binding
ABK1_1571	COG0582	viral genome integration into host DNA
ABK1_1573	COG3104	oligopeptide transport
ABK1_1576	COG0382	Catalyzes the prenylation of para-hydroxybenzoate (PHB) with an all-trans polyprenyl group. Mediates the second step in the final reaction sequence of ubiquinone-8 (UQ-8) biosynthesis, which is the condensation of the polyisoprenoid side chain with PHB, generating the first membrane-bound Q intermediate 3- octaprenyl-4-hydroxybenzoate
ABK1_1580	COG0605	Destroys radicals which are normally produced within the cells and which are toxic to biological systems
ABK1_1581	COG0327	Belongs to the GTP cyclohydrolase I type 2 NIF3 family
ABK1_1582	COG0265	Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain
ABK1_1586	COG1385	rRNA (uridine-N3-)-methyltransferase activity
ABK1_1587	COG0685	methylenetetrahydrofolate reductase (NAD(P)H) activity
ABK1_1588	COG3316	Transposase and inactivated derivatives
ABK1_1591	COG3316	Transposase and inactivated derivatives
ABK1_1592	COG2072	flavoprotein involved in K transport
ABK1_1593	COG0300	oxidoreductase activity
ABK1_1595	COG1309	transcriptional regulator
ABK1_1596	COG1741	Belongs to the pirin family
ABK1_1599	COG2072	flavoprotein involved in K transport
ABK1_1602	COG2252	PERMEase
ABK1_1603	COG1816	Catalyzes the hydrolytic deamination of adenine to hypoxanthine. Plays an important role in the purine salvage pathway and in nitrogen catabolism
ABK1_1604	COG3038	cytochrome b561
ABK1_1606	COG0164	Endonuclease that specifically degrades the RNA of RNA- DNA hybrids
ABK1_1610	COG0057	glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity
ABK1_1612	COG0104	Plays an important role in the de novo pathway of purine nucleotide biosynthesis. Catalyzes the first committed step in the biosynthesis of AMP from IMP
ABK1_1615	COG0667	Aldo Keto reductase
ABK1_1617	COG1765	OsmC-like protein
ABK1_1627	COG2885	chlorophyll binding
ABK1_1629	COG0625	glutathione transferase activity
ABK1_1630	COG0220	tRNA (guanine-N7-)-methyltransferase activity
ABK1_1634	COG3634	alkyl hydroperoxide reductase activity
ABK1_1636	COG2518	Catalyzes the methyl esterification of L-isoaspartyl residues in peptides and proteins that result from spontaneous decomposition of normal L-aspartyl and L-asparaginyl residues. It plays a role in the repair and or degradation of damaged proteins
ABK1_1638	COG0450	alkyl hydroperoxide reductase
ABK1_1639	COG1643	Atp-dependent helicase
ABK1_1642	COG2814	Major facilitator Superfamily
ABK1_1643	COG3135	benzoate transporter
ABK1_1644	COG1028	Short-chain dehydrogenase reductase Sdr
ABK1_1645	COG0543	2 iron, 2 sulfur cluster binding
ABK1_1645	COG0633	Ferredoxin
ABK1_1646	COG5517	Aromatic-ring-hydroxylating dioxygenase beta subunit
ABK1_1647	COG4638	Rieske (2fe-2S)
ABK1_1648	COG0583	DNA-binding transcription factor activity
ABK1_1658	COG1570	exodeoxyribonuclease VII activity
ABK1_1663	COG1280	lysine exporter protein (LysE YggA)
ABK1_1664	COG1278	Cold shock
ABK1_1672	COG2814	Major facilitator Superfamily
ABK1_1673	COG1733	regulation of RNA biosynthetic process
ABK1_1679	COG0794	Belongs to the SIS family. GutQ KpsF subfamily
ABK1_1679	COG0517	IMP dehydrogenase activity
ABK1_1680	COG1778	Involved in the biosynthesis of lipopolysaccharides (LPSs). Catalyzes the hydrolysis of 3-deoxy-D-manno-octulosonate 8-phosphate (KDO 8-P) to 3-deoxy-D-manno-octulosonate (KDO) and inorganic phosphate
ABK1_1682	COG1934	Involved in the assembly of lipopolysaccharide (LPS). Required for the translocation of LPS from the inner membrane to the outer membrane. May form a bridge between the inner membrane and the outer membrane, via interactions with LptC and LptD, thereby facilitating LPS transfer across the periplasm
ABK1_1683	COG1137	ATPase activity
ABK1_1684	COG1538	Outer membrane efflux protein
ABK1_1692	COG1146	Ferredoxins are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions
ABK1_1696	COG1522	sequence-specific DNA binding
ABK1_1697	COG5006	permease, DMT superfamily
ABK1_1699	COG1560	Kdo2-lipid A biosynthetic process
ABK1_1701	COG2814	Major facilitator Superfamily
ABK1_1705	COG1250	3-hydroxyacyl-CoA dehydrogenase
ABK1_1710	COG3501	Rhs element vgr protein
ABK1_1711	COG3209	COG3209 Rhs family protein
ABK1_1714	COG0583	DNA-binding transcription factor activity
ABK1_1715	COG1914	H( )-stimulated, divalent metal cation uptake system
ABK1_1719	COG4770	biotin carboxylase activity
ABK1_1720	COG0038	chloride channel
ABK1_1723	COG1309	transcriptional regulator
ABK1_1725	COG1063	alcohol dehydrogenase
ABK1_1726	COG1063	alcohol dehydrogenase
ABK1_1729	COG0439	Biotin carboxylase
ABK1_1730	COG2249	NAD(P)H dehydrogenase (quinone) activity
ABK1_1731	COG1733	regulation of RNA biosynthetic process
ABK1_1735	COG0864	Transcriptional regulator
ABK1_1737	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
ABK1_1738	COG1116	anion transmembrane transporter activity
ABK1_1753	COG3637	Has lipid A 3-O-deacylase activity. Hydrolyzes the ester bond at the 3 position of lipid A, a bioactive component of lipopolysaccharide (LPS), thereby releasing the primary fatty acyl moiety
ABK1_1753	COG2885	chlorophyll binding
ABK1_1761	COG0583	DNA-binding transcription factor activity
ABK1_1763	COG0590	tRNA wobble adenosine to inosine editing
ABK1_1764	COG2807	transmembrane transport
ABK1_1767	COG1636	Catalyzes the conversion of epoxyqueuosine (oQ) to queuosine (Q), which is a hypermodified base found in the wobble positions of tRNA(Asp), tRNA(Asn), tRNA(His) and tRNA(Tyr)
ABK1_1769	COG0789	Transcriptional regulator
ABK1_1771	COG0329	Catalyzes the condensation of (S)-aspartate-beta- semialdehyde (S)-ASA and pyruvate to 4-hydroxy- tetrahydrodipicolinate (HTPA)
ABK1_1775	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
ABK1_1777	COG0446	pyridine nucleotide-disulphide oxidoreductase
ABK1_1780	COG1012	belongs to the aldehyde dehydrogenase family
ABK1_1781	COG0531	amino acid
ABK1_1782	COG1760	l-serine dehydratase
ABK1_1783	COG2030	dehydratase
ABK1_1783	COG1012	belongs to the aldehyde dehydrogenase family
ABK1_1784	COG3396	Phenylacetate-CoA oxygenase
ABK1_1785	COG3460	Phenylacetate-CoA oxygenase
ABK1_1786	COG3396	Phenylacetate-CoA oxygenase
ABK1_1787	COG2151	metal-sulfur cluster biosynthetic enzyme
ABK1_1788	COG1018	Is involved in NO detoxification in an aerobic process, termed nitric oxide dioxygenase (NOD) reaction that utilizes O(2) and NAD(P)H to convert NO to nitrate, which protects the bacterium from various noxious nitrogen compounds. Therefore, plays a central role in the inducible response to nitrosative stress
ABK1_1789	COG1024	Enoyl-CoA hydratase
ABK1_1790	COG1024	Enoyl-CoA hydratase
ABK1_1791	COG1250	3-hydroxyacyl-CoA dehydrogenase
ABK1_1792	COG0183	Belongs to the thiolase family
ABK1_1793	COG1541	Catalyzes the activation of phenylacetic acid (PA) to phenylacetyl-CoA (PA-CoA)
ABK1_1794	COG3327	negative regulation of DNA-templated transcription, initiation
ABK1_1796	COG2050	protein possibly involved in aromatic compounds catabolism
ABK1_1804	COG0753	catalase activity
ABK1_1805	COG3038	cytochrome b561
ABK1_1809	COG2267	carboxylic ester hydrolase activity
ABK1_1810	COG1853	conserved protein domain typically associated with flavoprotein oxygenases, DIM6 NTAB family
ABK1_1811	COG2141	COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases
ABK1_1812	COG1012	belongs to the aldehyde dehydrogenase family
ABK1_1814	COG1457	Belongs to the purine-cytosine permease (2.A.39) family
ABK1_1816	COG1012	belongs to the aldehyde dehydrogenase family
ABK1_1817	COG0599	Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity
ABK1_1818	COG0583	DNA-binding transcription factor activity
ABK1_1820	COG1414	Transcriptional regulator
ABK1_1821	COG0654	COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases
ABK1_1823	COG1840	ABC-type Fe3 transport system, periplasmic component
ABK1_1824	COG3842	ATPase activity
ABK1_1827	COG0075	2-aminoethylphosphonate-pyruvate transaminase activity
ABK1_1828	COG0637	HAD-superfamily hydrolase subfamily IA, variant 3
ABK1_1829	COG2814	Major facilitator Superfamily
ABK1_1830	COG1960	acyl-CoA dehydrogenase activity
ABK1_1835	COG1024	Enoyl-CoA hydratase
ABK1_1837	COG2814	Major facilitator Superfamily
ABK1_1839	COG0183	Belongs to the thiolase family
ABK1_1840	COG1250	3-hydroxyacyl-CoA dehydrogenase
ABK1_1841	COG1028	Short-chain dehydrogenase reductase Sdr
ABK1_1842	COG1024	Enoyl-CoA hydratase
ABK1_1843	COG1960	acyl-CoA dehydrogenase activity
ABK1_1844	COG2814	Major facilitator Superfamily
ABK1_1845	COG1788	Acyl CoA acetate 3-ketoacid CoA transferase, alpha subunit
ABK1_1846	COG2057	Acyl CoA acetate 3-ketoacid CoA transferase beta subunit
ABK1_1848	COG2814	Major facilitator Superfamily
ABK1_1850	COG1960	acyl-CoA dehydrogenase activity
ABK1_1853	COG0583	DNA-binding transcription factor activity
ABK1_1856	COG1024	Enoyl-CoA hydratase
ABK1_1857	COG4799	Acetyl-CoA carboxylase, carboxyltransferase component subunits alpha and beta
ABK1_1858	COG1960	acyl-CoA dehydrogenase activity
ABK1_1859	COG1309	transcriptional regulator
ABK1_1860	COG0318	PFAM AMP-dependent synthetase and ligase
ABK1_1864	COG0583	DNA-binding transcription factor activity
ABK1_1874	COG1028	Short-chain dehydrogenase reductase Sdr
ABK1_1879	COG1974	Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair
ABK1_1885	COG0784	Response regulator, receiver
ABK1_1885	COG2205	protein histidine kinase activity
ABK1_1888	COG0765	amino acid transport
ABK1_1889	COG0765	amino acid transport
ABK1_1890	COG1126	abc transporter atp-binding protein
ABK1_1891	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
ABK1_1892	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
ABK1_1895	COG1280	lysine exporter protein (LysE YggA)
ABK1_1897	COG0520	Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L- selenocystine to produce L-alanine
ABK1_1898	COG0664	- Catabolite gene activator and regulatory subunit of cAMP-dependent protein
ABK1_1899	COG1045	serine acetyltransferase
ABK1_1902	COG0583	DNA-binding transcription factor activity
ABK1_1903	COG0625	glutathione transferase activity
ABK1_1904	COG0625	glutathione transferase activity
ABK1_1905	COG0583	DNA-binding transcription factor activity
ABK1_1907	COG1346	cytolysis
ABK1_1911	COG2814	Major facilitator Superfamily
ABK1_1915	COG1767	triphosphoribosyl-dephospho-CoA synthase activity
ABK1_1916	COG3052	prosthetic group binding
ABK1_1920	COG0331	[acyl-carrier-protein] S-malonyltransferase activity
ABK1_1924	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
ABK1_1926	COG1294	oxidase, subunit
ABK1_1927	COG1271	oxidase subunit
ABK1_1931	COG0477	Major facilitator Superfamily
ABK1_1936	COG4521	taurine ABC transporter
ABK1_1937	COG4525	Part of the ABC transporter complex TauABC involved in taurine import. Responsible for energy coupling to the transport system
ABK1_1938	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
ABK1_1939	COG2175	clavaminate synthase activity
ABK1_1941	COG1953	Uracil, thiamine, allantoin
ABK1_1943	COG0583	DNA-binding transcription factor activity
ABK1_1945	COG1001	Belongs to the metallo-dependent hydrolases superfamily. Adenine deaminase family
ABK1_1948	COG0640	Transcriptional regulator
ABK1_1949	COG0798	PFAM Bile acid sodium symporter
ABK1_1950	COG0583	DNA-binding transcription factor activity
ABK1_1953	COG3634	alkyl hydroperoxide reductase activity
ABK1_1961	COG0436	Aminotransferase
ABK1_1963	COG0386	Belongs to the glutathione peroxidase family
ABK1_1971	COG1296	Branched-chain amino acid permease (Azaleucine resistance)
ABK1_1976	COG0012	GTP binding
ABK1_1977	COG2011	ABC-type metal ion transport system permease component
ABK1_1978	COG1135	Part of the ABC transporter complex MetNIQ involved in methionine import. Responsible for energy coupling to the transport system
ABK1_1980	COG1464	Belongs to the NlpA lipoprotein family
ABK1_1986	COG0765	amino acid transport
ABK1_1987	COG0765	amino acid transport
ABK1_1988	COG1126	abc transporter atp-binding protein
ABK1_1990	COG1522	sequence-specific DNA binding
ABK1_1993	COG1309	transcriptional regulator
ABK1_1997	COG0583	DNA-binding transcription factor activity
ABK1_1999	COG1457	Belongs to the purine-cytosine permease (2.A.39) family
ABK1_2001	COG0697	spore germination
ABK1_2006	COG3121	Chaperone
ABK1_2007	COG3539	Fimbrial protein
ABK1_2013	COG0062	Bifunctional enzyme that catalyzes the epimerization of the S- and R-forms of NAD(P)HX and the dehydration of the S-form of NAD(P)HX at the expense of ADP, which is converted to AMP. This allows the repair of both epimers of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration
ABK1_2013	COG0063	ADP-dependent NAD(P)H-hydrate dehydratase activity
ABK1_2025	COG0021	Catalyzes the transfer of a two-carbon ketol group from a ketose donor to an aldose acceptor, via a covalent intermediate with the cofactor thiamine pyrophosphate
ABK1_2027	COG2353	YceI-like domain
ABK1_2029	COG3698	Phosphodiester glycosidase
ABK1_2032	COG2320	Catalyzes the phosphorylation of the 3'-hydroxyl group of dephosphocoenzyme A to form coenzyme A
ABK1_2033	COG3905	.,Oxidizes proline to glutamate for use as a carbon and nitrogen source
ABK1_2033	COG0506	proline dehydrogenase activity
ABK1_2033	COG4230	.,Oxidizes proline to glutamate for use as a carbon and nitrogen source
ABK1_2035	COG0591	Belongs to the sodium solute symporter (SSF) (TC 2.A.21) family
ABK1_2036	COG0846	NAD-dependent lysine deacetylase and desuccinylase that specifically removes acetyl and succinyl groups on target proteins. Modulates the activities of several proteins which are inactive in their acylated form
ABK1_2040	COG1132	(ABC) transporter
ABK1_2041	COG3122	Protein conserved in bacteria
ABK1_2042	COG3619	membrane
ABK1_2044	COG0640	Transcriptional regulator
ABK1_2046	COG2850	peptidyl-arginine hydroxylation
ABK1_2047	COG0424	maF-like protein
ABK1_2051	COG0191	fructose-bisphosphate aldolase activity
ABK1_2052	COG0760	Chaperone involved in the correct folding and assembly of outer membrane proteins. Recognizes specific patterns of aromatic residues and the orientation of their side chains, which are found more frequently in integral outer membrane proteins. May act in both early periplasmic and late outer membrane-associated steps of protein maturation
ABK1_2055	COG1208	COG1208 Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis translation initiation factor 2B, gamma epsilon subunits eIF-2Bgamma eIF-2Bepsilon
ABK1_2057	COG1192	Involved in chromosome partitioning
ABK1_2058	COG1475	DNA binding
ABK1_2059	COG0811	peptide transport
ABK1_2061	COG1132	(ABC) transporter
ABK1_2062	COG1663	tetraacyldisaccharide 4'-kinase activity
ABK1_2066	COG0084	hydrolase, TatD family'
ABK1_2069	COG2165	general secretion pathway protein
ABK1_2075	COG0590	tRNA wobble adenosine to inosine editing
ABK1_2079	COG0776	regulation of translation
ABK1_2085	COG1485	Reduces the stability of FtsZ polymers in the presence of ATP
ABK1_2086	COG2225	Involved in the glycolate utilization. Catalyzes the condensation and subsequent hydrolysis of acetyl-coenzyme A (acetyl-CoA) and glyoxylate to form malate and CoA
ABK1_2095	COG0339	signal peptide processing
ABK1_2097	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
ABK1_2104	COG0702	epimerase
ABK1_2105	COG0684	Catalyzes the aldol cleavage of 4-hydroxy-4-methyl-2- oxoglutarate (HMG) into 2 molecules of pyruvate. Also contains a secondary oxaloacetate (OAA) decarboxylase activity due to the common pyruvate enolate transition state formed following C-C bond cleavage in the retro-aldol and decarboxylation reactions
ABK1_2109	COG1197	Couples transcription and DNA repair by recognizing RNA polymerase (RNAP) stalled at DNA lesions. Mediates ATP-dependent release of RNAP and its truncated transcript from the DNA, and recruitment of nucleotide excision repair machinery to the damaged site
ABK1_2115	COG0316	Belongs to the HesB IscA family
ABK1_2116	COG0822	iron-sulfur transferase activity
ABK1_2121	COG0776	regulation of translation
ABK1_2122	COG0760	Chaperone involved in the correct folding and assembly of outer membrane proteins. Recognizes specific patterns of aromatic residues and the orientation of their side chains, which are found more frequently in integral outer membrane proteins. May act in both early periplasmic and late outer membrane-associated steps of protein maturation
ABK1_2123	COG2207	Transcriptional regulator
ABK1_2124	COG3696	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
ABK1_2125	COG1960	acyl-CoA dehydrogenase activity
ABK1_2126	COG1960	acyl-CoA dehydrogenase activity
ABK1_2129	COG2606	Belongs to the prolyl-tRNA editing family. YbaK EbsC subfamily
ABK1_2133	COG4264	IucA IucC family
ABK1_2134	COG4264	IucA IucC family
ABK1_2146	COG2038	nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase activity
ABK1_2150	COG0722	Stereospecific condensation of phosphoenolpyruvate (PEP) and D-erythrose-4-phosphate (E4P) giving rise to 3-deoxy-D- arabino-heptulosonate-7-phosphate (DAHP)
ABK1_2151	COG0730	response to heat
ABK1_2155	COG4773	Receptor
ABK1_2156	COG0763	Condensation of UDP-2,3-diacylglucosamine and 2,3- diacylglucosamine-1-phosphate to form lipid A disaccharide, a precursor of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell
ABK1_2159	COG1131	(ABC) transporter
ABK1_2160	COG0842	Transport permease protein
ABK1_2161	COG0842	Transport permease protein
ABK1_2173	COG2226	methyltransferase
ABK1_2178	COG0353	May play a role in DNA repair. It seems to be involved in an RecBC-independent recombinational process of DNA repair. It may act with RecF and RecO
ABK1_2185	COG0465	Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins
ABK1_2187	COG0133	tryptophan synthase activity
ABK1_2190	COG3706	GGDEF domain
ABK1_2193	COG0320	Catalyzes the radical-mediated insertion of two sulfur atoms into the C-6 and C-8 positions of the octanoyl moiety bound to the lipoyl domains of lipoate-dependent enzymes, thereby converting the octanoylated domains into lipoylated derivatives
ABK1_2194	COG1071	oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor
ABK1_2195	COG0022	dehydrogenase e1 component
ABK1_2196	COG0508	dehydrogenase complex catalyzes the overall conversion of
ABK1_2197	COG1249	Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family
ABK1_2199	COG1063	alcohol dehydrogenase
ABK1_2200	COG3781	membrane
ABK1_2202	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
ABK1_2202	COG3453	Protein conserved in bacteria
ABK1_2204	COG0730	response to heat
ABK1_2207	COG2207	Transcriptional regulator
ABK1_2207	COG3708	Transcriptional regulator
ABK1_2208	COG1733	regulation of RNA biosynthetic process
ABK1_2209	COG1182	Catalyzes the reductive cleavage of azo bond in aromatic azo compounds to the corresponding amines. Requires NADH, but not NADPH, as an electron donor for its activity
ABK1_2214	COG4521	taurine ABC transporter
ABK1_2215	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
ABK1_2219	COG0477	Major facilitator Superfamily
ABK1_2221	COG1027	Aspartate ammonia-lyase
ABK1_2224	COG0583	DNA-binding transcription factor activity
ABK1_2225	COG0583	DNA-binding transcription factor activity
ABK1_2226	COG0183	Belongs to the thiolase family
ABK1_2227	COG2031	fatty acid transporter
ABK1_2228	COG2057	Acyl CoA acetate 3-ketoacid CoA transferase beta subunit
ABK1_2230	COG0583	DNA-binding transcription factor activity
ABK1_2232	COG2610	gluconate transmembrane transporter activity
ABK1_2233	COG1028	Short-chain dehydrogenase reductase Sdr
ABK1_2234	COG2207	Transcriptional regulator
ABK1_2236	COG0412	Dienelactone hydrolase
ABK1_2237	COG1028	Short-chain dehydrogenase reductase Sdr
ABK1_2239	COG1853	conserved protein domain typically associated with flavoprotein oxygenases, DIM6 NTAB family
ABK1_2242	COG1018	Is involved in NO detoxification in an aerobic process, termed nitric oxide dioxygenase (NOD) reaction that utilizes O(2) and NAD(P)H to convert NO to nitrate, which protects the bacterium from various noxious nitrogen compounds. Therefore, plays a central role in the inducible response to nitrosative stress
ABK1_2242	COG0543	2 iron, 2 sulfur cluster binding
ABK1_2243	COG5517	Aromatic-ring-hydroxylating dioxygenase beta subunit
ABK1_2244	COG4638	Rieske (2fe-2S)
ABK1_2246	COG0725	ABC transporter, periplasmic molybdate-binding protein
ABK1_2247	COG4149	molybdate abc transporter
ABK1_2248	COG4148	Part of the ABC transporter complex ModABC involved in molybdenum import. Responsible for energy coupling to the transport system
ABK1_2249	COG1028	Short-chain dehydrogenase reductase Sdr
ABK1_2250	COG1535	isochorismatase
ABK1_2250	COG3433	isochorismatase activity
ABK1_2262	COG1502	Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol
ABK1_2265	COG0753	catalase activity
ABK1_2267	COG1062	S-(hydroxymethyl)glutathione dehydrogenase activity
ABK1_2272	COG3539	Fimbrial protein
ABK1_2275	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
ABK1_2279	COG2072	flavoprotein involved in K transport
ABK1_2281	COG1538	Outer membrane efflux protein
ABK1_2282	COG0841	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
ABK1_2283	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
ABK1_2284	COG0745	RESPONSE REGULATOR receiver
ABK1_2286	COG2205	protein histidine kinase activity
ABK1_2288	COG2207	Transcriptional regulator
ABK1_2291	COG1028	Short-chain dehydrogenase reductase Sdr
ABK1_2302	COG0496	Nucleotidase that shows phosphatase activity on nucleoside 5'-monophosphates
ABK1_2330	COG0462	Involved in the biosynthesis of the central metabolite phospho-alpha-D-ribosyl-1-pyrophosphate (PRPP) via the transfer of pyrophosphoryl group from ATP to 1-hydroxyl of ribose-5-phosphate (Rib-5-P)
ABK1_2334	COG1120	ATPase activity
ABK1_2338	COG1064	alcohol dehydrogenase
ABK1_2341	COG2207	Transcriptional regulator
ABK1_2342	COG2084	Dehydrogenase
ABK1_2344	COG0451	ADP-glyceromanno-heptose 6-epimerase activity
ABK1_2345	COG0583	DNA-binding transcription factor activity
ABK1_2347	COG0129	dihydroxy-acid dehydratase activity
ABK1_2348	COG1012	belongs to the aldehyde dehydrogenase family
ABK1_2351	COG1566	PFAM secretion protein HlyD family protein
ABK1_2355	COG0684	Catalyzes the aldol cleavage of 4-hydroxy-4-methyl-2- oxoglutarate (HMG) into 2 molecules of pyruvate. Also contains a secondary oxaloacetate (OAA) decarboxylase activity due to the common pyruvate enolate transition state formed following C-C bond cleavage in the retro-aldol and decarboxylation reactions
ABK1_2356	COG0111	D-isomer specific 2-hydroxyacid dehydrogenase
ABK1_2361	COG0583	DNA-binding transcription factor activity
ABK1_2372	COG3210	domain, Protein
ABK1_2373	COG2831	hemolysin activation secretion protein
ABK1_2376	COG1473	amidohydrolase
ABK1_2379	COG1226	(belongs to the monovalent cation proton antiporter 2 (CPA2) transporter (TC 2.A.37) family)
ABK1_2379	COG0475	glutathione-regulated potassium exporter activity
ABK1_2381	COG0583	DNA-binding transcription factor activity
ABK1_2382	COG1335	isochorismatase
ABK1_2384	COG1309	transcriptional regulator
ABK1_2390	COG0262	Key enzyme in folate metabolism. Catalyzes an essential reaction for de novo glycine and purine synthesis, and for DNA precursor synthesis
ABK1_2392	COG1902	pentaerythritol trinitrate reductase activity
ABK1_2392	COG0446	pyridine nucleotide-disulphide oxidoreductase
ABK1_2395	COG1846	Transcriptional regulator
ABK1_2400	COG0753	catalase activity
ABK1_2405	COG1012	belongs to the aldehyde dehydrogenase family
ABK1_2408	COG3162	membrane
ABK1_2410	COG3829	transcription factor binding
ABK1_2411	COG1028	Short-chain dehydrogenase reductase Sdr
ABK1_2412	COG1960	acyl-CoA dehydrogenase activity
ABK1_2416	COG1012	belongs to the aldehyde dehydrogenase family
ABK1_2420	COG2186	Transcriptional regulator
ABK1_2422	COG0583	DNA-binding transcription factor activity
ABK1_2423	COG4948	Mandelate Racemase Muconate Lactonizing
ABK1_2424	COG4829	muconolactone delta-isomerase
ABK1_2426	COG1788	Acyl CoA acetate 3-ketoacid CoA transferase, alpha subunit
ABK1_2427	COG2057	Acyl CoA acetate 3-ketoacid CoA transferase beta subunit
ABK1_2428	COG0183	Belongs to the thiolase family
ABK1_2429	COG2021	Transfers an acetyl group from acetyl-CoA to L- homoserine, forming acetyl-L-homoserine
ABK1_2431	COG1012	belongs to the aldehyde dehydrogenase family
ABK1_2433	COG3733	amine oxidase
ABK1_2436	COG1853	conserved protein domain typically associated with flavoprotein oxygenases, DIM6 NTAB family
ABK1_2438	COG1028	Short-chain dehydrogenase reductase Sdr
ABK1_2440	COG4638	Rieske (2fe-2S)
ABK1_2444	COG0154	amidase activity
ABK1_2446	COG2814	Major facilitator Superfamily
ABK1_2451	COG1960	acyl-CoA dehydrogenase activity
ABK1_2452	COG0583	DNA-binding transcription factor activity
ABK1_2453	COG1414	Transcriptional regulator
ABK1_2456	COG2391	methyltransferase activity
ABK1_2458	COG4993	Dehydrogenase
ABK1_2459	COG3659	wide pore channel activity
ABK1_2460	COG3420	alginic acid biosynthetic process
ABK1_2461	COG0710	3-dehydroquinate dehydratase activity
ABK1_2462	COG3485	protocatechuate 3,4-dioxygenase
ABK1_2463	COG3485	protocatechuate 3,4-dioxygenase
ABK1_2464	COG0599	Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity
ABK1_2465	COG2271	Major facilitator Superfamily
ABK1_2466	COG0596	Alpha beta hydrolase
ABK1_2467	COG0015	Belongs to the lyase 1 family. Adenylosuccinate lyase subfamily
ABK1_2468	COG0183	Belongs to the thiolase family
ABK1_2469	COG2057	Acyl CoA acetate 3-ketoacid CoA transferase beta subunit
ABK1_2470	COG1788	Acyl CoA acetate 3-ketoacid CoA transferase, alpha subunit
ABK1_2472	COG2919	Essential cell division protein. May link together the upstream cell division proteins, which are predominantly cytoplasmic, with the downstream cell division proteins, which are predominantly periplasmic
ABK1_2473	COG2323	membrane
ABK1_2482	COG0446	pyridine nucleotide-disulphide oxidoreductase
ABK1_2482	COG1902	pentaerythritol trinitrate reductase activity
ABK1_2485	COG0722	Stereospecific condensation of phosphoenolpyruvate (PEP) and D-erythrose-4-phosphate (E4P) giving rise to 3-deoxy-D- arabino-heptulosonate-7-phosphate (DAHP)
ABK1_2487	COG0542	response to heat
ABK1_2488	COG2127	Involved in the modulation of the specificity of the ClpAP-mediated ATP-dependent protein degradation
ABK1_2494	COG1171	Catalyzes the anaerobic formation of alpha-ketobutyrate and ammonia from threonine in a two-step reaction. The first step involved a dehydration of threonine and a production of enamine intermediates (aminocrotonate), which tautomerizes to its imine form (iminobutyrate). Both intermediates are unstable and short- lived. The second step is the nonenzymatic hydrolysis of the enamine imine intermediates to form 2-ketobutyrate and free ammonia. In the low water environment of the cell, the second step is accelerated by RidA
ABK1_2495	COG0569	domain protein
ABK1_2496	COG0168	Low-affinity potassium transport system. Interacts with trk system potassium uptake protein TrkA
ABK1_2499	COG4774	siderophore transport
ABK1_2501	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
ABK1_2503	COG1585	Membrane protein implicated in regulation of membrane protease activity
ABK1_2506	COG1294	oxidase, subunit
ABK1_2509	COG3110	Uncharacterized protein conserved in bacteria (DUF2057)
ABK1_2511	COG0552	protein localization to endoplasmic reticulum
ABK1_2516	COG0517	IMP dehydrogenase activity
ABK1_2516	COG0516	GMP reductase activity
ABK1_2517	COG4992	N2-acetyl-L-ornithine:2-oxoglutarate 5-aminotransferase activity
ABK1_2518	COG0278	Belongs to the glutaredoxin family. Monothiol subfamily
ABK1_2520	COG0583	DNA-binding transcription factor activity
ABK1_2521	COG0024	Methionine aminopeptidase
ABK1_2526	COG4668	phosphoenolpyruvate-dependent sugar phosphotransferase system
ABK1_2526	COG1080	General (non sugar-specific) component of the phosphoenolpyruvate-dependent sugar phosphotransferase system (sugar PTS). This major carbohydrate active-transport system catalyzes the phosphorylation of incoming sugar substrates concomitantly with their translocation across the cell membrane. Enzyme I transfers the phosphoryl group from phosphoenolpyruvate (PEP) to the phosphoryl carrier protein (HPr)
ABK1_2527	COG1105	Belongs to the carbohydrate kinase PfkB family
ABK1_2528	COG1299	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
ABK1_2528	COG1445	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
ABK1_2528	COG3925	protein-phosphocysteine-D-fructose-phosphotransferase system transporter activity
ABK1_2533	COG5001	Diguanylate cyclase
ABK1_2533	COG3300	MHYT domain
ABK1_2536	COG2135	peptidase activity
ABK1_2537	COG0659	secondary active sulfate transmembrane transporter activity
ABK1_2540	COG1113	amino acid transport
ABK1_2542	COG1522	sequence-specific DNA binding
ABK1_2547	COG1011	Hydrolase
ABK1_2548	COG1188	Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit, (S4 paralog))
ABK1_2550	COG2137	regulation of response to DNA damage stimulus
ABK1_2552	COG1043	involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell
ABK1_2559	COG0575	Belongs to the CDS family
ABK1_2560	COG0020	Catalyzes the condensation of isopentenyl diphosphate (IPP) with allylic pyrophosphates generating different type of terpenoids
ABK1_2565	COG3852	Histidine kinase
ABK1_2566	COG2204	response regulator
ABK1_2578	COG1087	Belongs to the NAD(P)-dependent epimerase dehydratase family
ABK1_2579	COG1553	Part of a sulfur-relay system required for 2-thiolation of 5-methylaminomethyl-2-thiouridine (mnm(5)s(2)U) at tRNA wobble positions. Accepts sulfur from TusA and transfers it in turn to TusE
ABK1_2583	COG0697	spore germination
ABK1_2584	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
ABK1_2586	COG0303	'Molybdopterin
ABK1_2587	COG0521	Mo-molybdopterin cofactor biosynthetic process
ABK1_2587	COG0315	cyclic pyranopterin monophosphate synthase activity
ABK1_2590	COG2896	Catalyzes the cyclization of GTP to (8S)-3',8-cyclo-7,8- dihydroguanosine 5'-triphosphate
ABK1_2591	COG0243	molybdopterin cofactor binding
ABK1_2593	COG0243	molybdopterin cofactor binding
ABK1_2594	COG1251	Belongs to the nitrite and sulfite reductase 4Fe-4S domain family
ABK1_2595	COG1251	Belongs to the nitrite and sulfite reductase 4Fe-4S domain family
ABK1_2595	COG2146	nitrite reductase [NAD(P)H] activity
ABK1_2596	COG0745	RESPONSE REGULATOR receiver
ABK1_2597	COG1116	anion transmembrane transporter activity
ABK1_2597	COG0715	COG0715 ABC-type nitrate sulfonate bicarbonate transport systems periplasmic components
ABK1_2600	COG0511	ligase activity, forming carbon-carbon bonds
ABK1_2603	COG2814	Major facilitator Superfamily
ABK1_2604	COG2194	sulfuric ester hydrolase activity
ABK1_2619	COG1196	nuclear chromosome segregation
ABK1_2619	COG0741	lytic transglycosylase activity
ABK1_2619	COG0739	heme binding
ABK1_2622	COG1598	PFAM Uncharacterised protein family UPF0150
ABK1_2640	COG5410	chromosome segregation
ABK1_2669	COG0512	Glutamine amidotransferase of anthranilate synthase
ABK1_2670	COG0308	aminopeptidase N
ABK1_2676	COG1529	Aldehyde oxidase and xanthine dehydrogenase
ABK1_2685	COG3739	integral membrane protein
ABK1_2688	COG1169	isochorismate synthase
ABK1_2690	COG3208	Thioesterase involved in non-ribosomal peptide biosynthesis
ABK1_2692	COG1132	(ABC) transporter
ABK1_2696	COG3433	isochorismatase activity
ABK1_2696	COG1535	isochorismatase
ABK1_2697	COG1021	2,3-dihydroxybenzoate-AMP ligase
ABK1_2698	COG1020	D-alanine [D-alanyl carrier protein] ligase activity
ABK1_2700	COG4774	siderophore transport
ABK1_2701	COG4607	ABC-type enterochelin transport system periplasmic component
ABK1_2702	COG4604	ABC transporter, ATP-binding protein
ABK1_2703	COG4605	iron ion homeostasis
ABK1_2704	COG4606	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
ABK1_2705	COG1020	D-alanine [D-alanyl carrier protein] ligase activity
ABK1_2708	COG2964	Protein conserved in bacteria
ABK1_2711	COG1741	Belongs to the pirin family
ABK1_2715	COG1309	transcriptional regulator
ABK1_2717	COG4948	Mandelate Racemase Muconate Lactonizing
ABK1_2718	COG2814	Major facilitator Superfamily
ABK1_2727	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
ABK1_2727	COG4121	Catalyzes the last two steps in the biosynthesis of 5- methylaminomethyl-2-thiouridine (mnm(5)s(2)U) at the wobble position (U34) in tRNA. Catalyzes the FAD-dependent demodification of cmnm(5)s(2)U34 to nm(5)s(2)U34, followed by the transfer of a methyl group from S-adenosyl-L-methionine to nm(5)s(2)U34, to form mnm(5)s(2)U34
ABK1_2728	COG1251	Belongs to the nitrite and sulfite reductase 4Fe-4S domain family
ABK1_2734	COG1292	Belongs to the BCCT transporter (TC 2.A.15) family
ABK1_2735	COG1292	Belongs to the BCCT transporter (TC 2.A.15) family
ABK1_2737	COG0583	DNA-binding transcription factor activity
ABK1_2738	COG1113	amino acid transport
ABK1_2742	COG4465	DNA-binding protein that represses the expression of many genes that are induced as cells make the transition from rapid exponential growth to stationary phase. It is a GTP-binding protein that senses the intracellular GTP concentration as an indicator of nutritional limitations. At low GTP concentration it no longer binds GTP and stop to act as a transcriptional repressor
ABK1_2742	COG2508	Transcriptional regulator
ABK1_2748	COG2879	small protein
ABK1_2749	COG1966	Carbon starvation protein
ABK1_2758	COG1067	ATP-dependent peptidase activity
ABK1_2759	COG0583	DNA-binding transcription factor activity
ABK1_2764	COG1686	Belongs to the peptidase S11 family
ABK1_2765	COG0663	COG0663 Carbonic anhydrases acetyltransferases, isoleucine patch superfamily
ABK1_2772	COG0616	signal peptide processing
ABK1_2773	COG1117	ATPase-coupled phosphate ion transmembrane transporter activity
ABK1_2775	COG0573	inorganic phosphate transmembrane transporter activity
ABK1_2776	COG0226	Part of the ABC transporter complex PstSACB involved in phosphate import
ABK1_2778	COG1113	amino acid transport
ABK1_2779	COG3961	Belongs to the TPP enzyme family
ABK1_2780	COG1522	sequence-specific DNA binding
ABK1_2782	COG0076	glutamate decarboxylase activity
ABK1_2783	COG0160	Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family
ABK1_2785	COG1309	transcriptional regulator
ABK1_2788	COG1018	Is involved in NO detoxification in an aerobic process, termed nitric oxide dioxygenase (NOD) reaction that utilizes O(2) and NAD(P)H to convert NO to nitrate, which protects the bacterium from various noxious nitrogen compounds. Therefore, plays a central role in the inducible response to nitrosative stress
ABK1_2795	COG0352	thiamine-phosphate diphosphorylase activity
ABK1_2800	COG0612	Peptidase, M16
ABK1_2803	COG0583	DNA-binding transcription factor activity
ABK1_2804	COG0477	Major facilitator Superfamily
ABK1_2808	COG1187	pseudouridine synthase activity
ABK1_2811	COG1686	Belongs to the peptidase S11 family
ABK1_2812	COG1252	NADH dehydrogenase
ABK1_2814	COG0415	Belongs to the DNA photolyase family
ABK1_2817	COG1215	transferase activity, transferring glycosyl groups
ABK1_2823	COG2070	2-Nitropropane dioxygenase
ABK1_2836	COG0556	nucleotide-excision repair
ABK1_2844	COG4221	oxidoreductase activity
ABK1_2846	COG0854	Catalyzes the complicated ring closure reaction between the two acyclic compounds 1-deoxy-D-xylulose-5-phosphate (DXP) and 3-amino-2-oxopropyl phosphate (1-amino-acetone-3-phosphate or AAP) to form pyridoxine 5'-phosphate (PNP) and inorganic phosphate
ABK1_2847	COG1381	Involved in DNA repair and RecF pathway recombination
ABK1_2849	COG1159	An essential GTPase that binds both GDP and GTP, with rapid nucleotide exchange. Plays a role in 16S rRNA processing and 30S ribosomal subunit biogenesis and possibly also in cell cycle regulation and energy metabolism
ABK1_2852	COG0681	Belongs to the peptidase S26 family
ABK1_2855	COG0265	Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain
ABK1_2859	COG1559	Functions as a peptidoglycan terminase that cleaves nascent peptidoglycan strands endolytically to terminate their elongation
ABK1_2860	COG0115	Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family
ABK1_2861	COG1613	Sulfate ABC transporter periplasmic sulfate-binding protein
ABK1_2863	COG0555	PFAM binding-protein-dependent transport systems inner membrane component
ABK1_2864	COG4208	sulfate ABC transporter
ABK1_2865	COG1118	Part of the ABC transporter complex CysAWTP involved in sulfate thiosulfate import. Responsible for energy coupling to the transport system
ABK1_2866	COG0583	DNA-binding transcription factor activity
ABK1_2867	COG4625	pathogenesis
ABK1_2870	COG0603	Catalyzes the ATP-dependent conversion of 7-carboxy-7- deazaguanine (CDG) to 7-cyano-7-deazaguanine (preQ(0))
ABK1_2873	COG1225	Alkyl hydroperoxide reductase Thiol specific antioxidant Mal allergen
ABK1_2875	COG1056	cytidyltransferase-related domain
ABK1_2875	COG1051	belongs to the nudix hydrolase family
ABK1_2876	COG1024	Enoyl-CoA hydratase
ABK1_2877	COG0327	Belongs to the GTP cyclohydrolase I type 2 NIF3 family
ABK1_2879	COG2814	Major facilitator Superfamily
ABK1_2880	COG0047	phosphoribosylformylglycinamidine synthase activity
ABK1_2880	COG0046	Part of the phosphoribosylformylglycinamidine synthase complex involved in the purines biosynthetic pathway. Catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to yield formylglycinamidine ribonucleotide (FGAM) and glutamate. The FGAM synthase complex is composed of three subunits. PurQ produces an ammonia molecule by converting glutamine to glutamate. PurL transfers the ammonia molecule to FGAR to form FGAM in an ATP-dependent manner. PurS interacts with PurQ and PurL and is thought to assist in the transfer of the ammonia molecule from PurQ to PurL
ABK1_2884	COG1473	amidohydrolase
ABK1_2885	COG0824	Thioesterase
ABK1_2889	COG0823	Involved in the tonB-independent uptake of proteins
ABK1_2893	COG0566	Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family
ABK1_2902	COG0628	permease
ABK1_2904	COG0299	Catalyzes the transfer of a formyl group from 10- formyltetrahydrofolate to 5-phospho-ribosyl-glycinamide (GAR), producing 5-phospho-ribosyl-N-formylglycinamide (FGAR) and tetrahydrofolate
ABK1_2905	COG0596	Alpha beta hydrolase
ABK1_2906	COG0616	signal peptide processing
ABK1_2906	COG3004	Na( ) H( ) antiporter that extrudes sodium in exchange for external protons
ABK1_2907	COG2333	competence protein COMEC
ABK1_2907	COG0658	competence protein
ABK1_2908	COG1136	(ABC) transporter
ABK1_2909	COG4591	ABC-type transport system involved in lipoprotein release permease component
ABK1_2916	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
ABK1_2920	COG0463	Glycosyl transferase, family 2
ABK1_2926	COG4973	Belongs to the 'phage' integrase family. XerC subfamily
ABK1_2927	COG1280	lysine exporter protein (LysE YggA)
ABK1_2929	COG0019	diaminopimelate decarboxylase activity
ABK1_2931	COG1113	amino acid transport
ABK1_2936	COG2269	With EpmB is involved in the beta-lysylation step of the post-translational modification of translation elongation factor P (EF-P). Catalyzes the ATP-dependent activation of (R)-beta-lysine produced by EpmB, forming a lysyl-adenylate, from which the beta- lysyl moiety is then transferred to the epsilon-amino group of a conserved specific lysine residue in EF-P
ABK1_2938	COG3339	Conserved Protein
ABK1_2939	COG1526	Required for formate dehydrogenase (FDH) activity. Acts as a sulfur carrier protein that transfers sulfur from IscS to the molybdenum cofactor prior to its insertion into FDH
ABK1_2940	COG0243	molybdopterin cofactor binding
ABK1_2941	COG1929	Belongs to the glycerate kinase type-1 family
ABK1_2942	COG1929	Belongs to the glycerate kinase type-1 family
ABK1_2944	COG0778	Nitroreductase
ABK1_2949	COG1020	D-alanine [D-alanyl carrier protein] ligase activity
ABK1_2951	COG0782	Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus
ABK1_2955	COG0741	lytic transglycosylase activity
ABK1_2959	COG0584	glycerophosphoryl diester phosphodiesterase
ABK1_2960	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
ABK1_2965	COG1409	Hydrolyzes cAMP to 5'-AMP. Plays an important regulatory role in modulating the intracellular concentration of cAMP, thereby influencing cAMP-dependent processes
ABK1_2969	COG0554	Key enzyme in the regulation of glycerol uptake and metabolism. Catalyzes the phosphorylation of glycerol to yield sn- glycerol 3-phosphate
ABK1_2970	COG0477	Major facilitator Superfamily
ABK1_2977	COG0294	Catalyzes the condensation of para-aminobenzoate (pABA) with 6-hydroxymethyl-7,8-dihydropterin diphosphate (DHPt-PP) to form 7,8-dihydropteroate (H2Pte), the immediate precursor of folate derivatives
ABK1_2978	COG0465	Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins
ABK1_2983	COG0505	Belongs to the CarA family
ABK1_2987	COG0589	response to stress
ABK1_2990	COG2843	Capsule synthesis protein
ABK1_3002	COG2321	neutral zinc metallopeptidase
ABK1_3003	COG2354	Protein conserved in bacteria
ABK1_3007	COG1249	Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family
ABK1_3010	COG0479	Belongs to the succinate dehydrogenase fumarate reductase iron-sulfur protein family
ABK1_3011	COG1053	succinate dehydrogenase
ABK1_3012	COG2142	Succinate dehydrogenase hydrophobic membrane anchor
ABK1_3013	COG2009	succinate dehydrogenase
ABK1_3021	COG2921	Belongs to the UPF0250 family
ABK1_3022	COG0321	lipoyl(octanoyl) transferase activity
ABK1_3025	COG0531	amino acid
ABK1_3027	COG1733	regulation of RNA biosynthetic process
ABK1_3028	COG0219	Methylates the ribose at the nucleotide 34 wobble position in the two leucyl isoacceptors tRNA(Leu)(CmAA) and tRNA(Leu)(cmnm5UmAA). Catalyzes the methyl transfer from S- adenosyl-L-methionine to the 2'-OH of the wobble nucleotide
ABK1_3029	COG1648	precorrin-2 dehydrogenase activity
ABK1_3029	COG0007	Multifunctional enzyme that catalyzes the SAM-dependent methylations of uroporphyrinogen III at position C-2 and C-7 to form precorrin-2 via precorrin-1. Then it catalyzes the NAD- dependent ring dehydrogenation of precorrin-2 to yield sirohydrochlorin. Finally, it catalyzes the ferrochelation of sirohydrochlorin to yield siroheme
ABK1_3032	COG2834	Participates in the translocation of lipoproteins from the inner membrane to the outer membrane. Only forms a complex with a lipoprotein if the residue after the N-terminal Cys is not an aspartate (The Asp acts as a targeting signal to indicate that the lipoprotein should stay in the inner membrane)
ABK1_3037	COG0671	phosphoesterase, PA-phosphatase related
ABK1_3038	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
ABK1_3040	COG1538	Outer membrane efflux protein
ABK1_3041	COG0393	Putative heavy-metal-binding
ABK1_3042	COG0393	Putative heavy-metal-binding
ABK1_3044	COG1028	Short-chain dehydrogenase reductase Sdr
ABK1_3046	COG0525	valine-tRNA ligase activity
ABK1_3050	COG0583	DNA-binding transcription factor activity
ABK1_3051	COG0004	ammonium transporteR
ABK1_3053	COG0642	Histidine kinase
ABK1_3054	COG0745	RESPONSE REGULATOR receiver
ABK1_3055	COG2194	sulfuric ester hydrolase activity
ABK1_3059	COG1752	Esterase of the alpha-beta hydrolase superfamily
ABK1_3062	COG2315	Protein conserved in bacteria
ABK1_3063	COG0142	geranyltranstransferase activity
ABK1_3064	COG2828	Protein conserved in bacteria
ABK1_3066	COG1113	amino acid transport
ABK1_3069	COG2207	Transcriptional regulator
ABK1_3074	COG2249	NAD(P)H dehydrogenase (quinone) activity
ABK1_3078	COG1020	D-alanine [D-alanyl carrier protein] ligase activity
ABK1_3080	COG1530	ribonuclease E activity
ABK1_3081	COG0424	maF-like protein
ABK1_3083	COG1792	Involved in formation and maintenance of cell shape
ABK1_3084	COG1077	Cell shape determining protein MreB Mrl
ABK1_3085	COG0721	Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp- tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA(Gln)
ABK1_3087	COG0064	Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp- tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA(Gln)
ABK1_3093	COG1133	In Escherichia coli SbmA is involved in uptake of microcin J25
ABK1_3094	COG1171	Catalyzes the anaerobic formation of alpha-ketobutyrate and ammonia from threonine in a two-step reaction. The first step involved a dehydration of threonine and a production of enamine intermediates (aminocrotonate), which tautomerizes to its imine form (iminobutyrate). Both intermediates are unstable and short- lived. The second step is the nonenzymatic hydrolysis of the enamine imine intermediates to form 2-ketobutyrate and free ammonia. In the low water environment of the cell, the second step is accelerated by RidA
ABK1_3095	COG1752	Esterase of the alpha-beta hydrolase superfamily
ABK1_3096	COG1115	amino acid carrier protein
ABK1_3100	COG2814	Major facilitator Superfamily
ABK1_3101	COG1289	transmembrane transporter activity
ABK1_3105	COG1376	ErfK ybiS ycfS ynhG family protein
ABK1_3106	COG2832	Protein of unknown function (DUF454)
ABK1_3108	COG5510	response to toxic substance
ABK1_3112	COG0840	transmembrane signaling receptor activity
ABK1_3120	COG3422	double-strand break repair
ABK1_3121	COG2824	Alkylphosphonate utilization operon protein PhnA
ABK1_3122	COG3189	MarR family transcriptional regulator
ABK1_3124	COG0354	folic acid binding
ABK1_3125	COG1651	Required for disulfide bond formation in some periplasmic proteins. Acts by transferring its disulfide bond to other proteins and is reduced in the process
ABK1_3127	COG0679	Auxin Efflux Carrier
ABK1_3128	COG1902	pentaerythritol trinitrate reductase activity
ABK1_3129	COG4772	TonB-dependent receptor
ABK1_3130	COG2094	Belongs to the DNA glycosylase MPG family
ABK1_3136	COG2233	PERMEase
ABK1_3138	COG0833	amino acid
ABK1_3139	COG1690	Belongs to the RtcB family
ABK1_3141	COG3637	Has lipid A 3-O-deacylase activity. Hydrolyzes the ester bond at the 3 position of lipid A, a bioactive component of lipopolysaccharide (LPS), thereby releasing the primary fatty acyl moiety
ABK1_3141	COG2885	chlorophyll binding
ABK1_3143	COG0183	Belongs to the thiolase family
ABK1_3147	COG0155	Belongs to the nitrite and sulfite reductase 4Fe-4S domain family
ABK1_3152	COG2207	Transcriptional regulator
ABK1_3153	COG0183	Belongs to the thiolase family
ABK1_3160	COG1272	protein, Hemolysin III
ABK1_3161	COG0477	Major facilitator Superfamily
ABK1_3164	COG0450	alkyl hydroperoxide reductase
ABK1_3168	COG0285	dihydrofolate synthase activity
ABK1_3175	COG0133	tryptophan synthase activity
ABK1_3179	COG2096	Adenosyltransferase
ABK1_3183	COG0397	Uncharacterized ACR, YdiU/UPF0061 family
ABK1_3184	COG0745	RESPONSE REGULATOR receiver
ABK1_3185	COG2205	protein histidine kinase activity
ABK1_3187	COG1960	acyl-CoA dehydrogenase activity
ABK1_3188	COG1960	acyl-CoA dehydrogenase activity
ABK1_3189	COG0583	DNA-binding transcription factor activity
ABK1_3190	COG0625	glutathione transferase activity
ABK1_3203	COG0438	transferase activity, transferring glycosyl groups
ABK1_3204	COG0463	Glycosyl transferase, family 2
ABK1_3205	COG0726	polysaccharide deacetylase
ABK1_3209	COG1391	[glutamine synthetase]-adenylyl-L-tyrosine phosphorylase
ABK1_3210	COG2205	protein histidine kinase activity
ABK1_3218	COG1862	Preprotein translocase
ABK1_3220	COG0341	Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA
ABK1_3221	COG0452	Catalyzes two steps in the biosynthesis of coenzyme A. In the first step cysteine is conjugated to 4'-phosphopantothenate to form 4-phosphopantothenoylcysteine, in the latter compound is decarboxylated to form 4'-phosphopantotheine
ABK1_3223	COG3781	membrane
ABK1_3224	COG0613	PHP domain protein
ABK1_3226	COG2350	Protein conserved in bacteria
ABK1_3232	COG1607	acyl-coa hydrolase
ABK1_3235	COG3453	Protein conserved in bacteria
ABK1_3235	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
ABK1_3239	COG2199	diguanylate cyclase activity
ABK1_3241	COG1408	metallophosphoesterase
ABK1_3242	COG1502	Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol
ABK1_3244	COG2262	GTPase that associates with the 50S ribosomal subunit and may have a role during protein synthesis or ribosome biogenesis
ABK1_3248	COG0639	Hydrolyzes diadenosine 5',5'''-P1,P4-tetraphosphate to yield ADP
ABK1_3249	COG0030	16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase activity
ABK1_3252	COG0103	maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
ABK1_3254	COG2969	positive regulation of protein catabolic process
ABK1_3258	COG1960	acyl-CoA dehydrogenase activity
ABK1_3259	COG4799	Acetyl-CoA carboxylase, carboxyltransferase component subunits alpha and beta
ABK1_3262	COG1309	transcriptional regulator
ABK1_3263	COG1960	acyl-CoA dehydrogenase activity
ABK1_3267	COG1183	phosphatidylcholine synthase activity
ABK1_3268	COG2961	Specifically methylates the adenine in position 2030 of 23S rRNA
ABK1_3274	COG1196	nuclear chromosome segregation
ABK1_3274	COG0741	lytic transglycosylase activity
ABK1_3274	COG0739	heme binding
ABK1_3276	COG1702	phosphate starvation-inducible protein PhoH
ABK1_3283	COG1295	ribonuclease BN
ABK1_3284	COG0697	spore germination
ABK1_3285	COG2169	Transcriptional regulator
ABK1_3286	COG0179	Fumarylacetoacetate (FAA) hydrolase
ABK1_3291	COG0557	exoribonuclease II activity
ABK1_3292	COG0339	signal peptide processing
ABK1_3293	COG3529	nucleic-acid-binding protein containing a Zn-ribbon domain
ABK1_3299	COG2938	An FAD assembly protein, which accelerates covalent attachment of the cofactor into other proteins. Plays an essential role in the assembly of succinate dehydrogenase (SDH, respiratory complex II), an enzyme complex that is a component of both the tricarboxylic acid cycle and the electron transport chain, and which couples the oxidation of succinate to fumarate with the reduction of ubiquinone (coenzyme Q) to ubiquinol. Required for flavinylation (covalent attachment of FAD) of the flavoprotein subunit SdhA of SDH
ABK1_3300	COG1960	acyl-CoA dehydrogenase activity
ABK1_3305	COG0100	Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine-Dalgarno cleft in the 70S ribosome
ABK1_3307	COG0257	Belongs to the bacterial ribosomal protein bL36 family
ABK1_3331	COG0626	cystathionine gamma-synthase activity
ABK1_3332	COG0433	COG0433 Predicted ATPase
ABK1_3333	COG1017	nitric oxide dioxygenase activity
ABK1_3333	COG1018	Is involved in NO detoxification in an aerobic process, termed nitric oxide dioxygenase (NOD) reaction that utilizes O(2) and NAD(P)H to convert NO to nitrate, which protects the bacterium from various noxious nitrogen compounds. Therefore, plays a central role in the inducible response to nitrosative stress
ABK1_3334	COG1959	2 iron, 2 sulfur cluster binding
ABK1_3337	COG1301	dicarboxylic acid transport
ABK1_3338	COG1946	Acyl-CoA thioesterase
ABK1_3342	COG1200	Critical role in recombination and DNA repair. Helps process Holliday junction intermediates to mature products by catalyzing branch migration. Has a DNA unwinding activity characteristic of a DNA helicase with a 3'- to 5'- polarity. Unwinds branched duplex DNA (Y-DNA)
ABK1_3343	COG1040	competence protein
ABK1_3344	COG0494	nUDIX hydrolase
ABK1_3346	COG0598	Magnesium transport protein CorA
ABK1_3348	COG2854	intermembrane phospholipid transfer
ABK1_3350	COG0767	ABC-type transport system involved in resistance to organic solvents, permease component
ABK1_3351	COG1127	ABC transporter
ABK1_3353	COG0513	Belongs to the DEAD box helicase family
ABK1_3357	COG0408	coproporphyrinogen oxidase activity
ABK1_3360	COG1960	acyl-CoA dehydrogenase activity
ABK1_3362	COG1983	PspC domain protein
ABK1_3363	COG0517	IMP dehydrogenase activity
ABK1_3372	COG0583	DNA-binding transcription factor activity
ABK1_3380	COG1012	belongs to the aldehyde dehydrogenase family
ABK1_3382	COG4992	N2-acetyl-L-ornithine:2-oxoglutarate 5-aminotransferase activity
ABK1_3383	COG0334	Belongs to the Glu Leu Phe Val dehydrogenases family
ABK1_3385	COG0833	amino acid
ABK1_3391	COG1192	Involved in chromosome partitioning
ABK1_3392	COG0628	permease
ABK1_3394	COG1289	transmembrane transporter activity
ABK1_3397	COG2249	NAD(P)H dehydrogenase (quinone) activity
ABK1_3398	COG1359	(4S)-4-hydroxy-5-phosphonooxypentane-2,3-dione isomerase activity
ABK1_3400	COG0277	FAD linked oxidase domain protein
ABK1_3401	COG0111	D-isomer specific 2-hydroxyacid dehydrogenase
ABK1_3406	COG0130	Responsible for synthesis of pseudouridine from uracil- 55 in the psi GC loop of transfer RNAs
ABK1_3407	COG5380	lipid catabolic process
ABK1_3411	COG0806	An accessory protein needed during the final step in the assembly of 30S ribosomal subunit, possibly for assembly of the head region. Probably interacts with S19. Essential for efficient processing of 16S rRNA. May be needed both before and after RbfA during the maturation of 16S rRNA. It has affinity for free ribosomal 30S subunits but not for 70S ribosomes
ABK1_3421	COG0194	GDP metabolic process
ABK1_3423	COG0317	In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance
ABK1_3427	COG3307	-O-antigen
ABK1_3433	COG1512	COG1512 Beta-propeller domains of methanol dehydrogenase type
ABK1_3434	COG1704	LemA family
ABK1_3436	COG0493	'glutamate synthase
ABK1_3437	COG0070	glutamate synthase
ABK1_3437	COG0069	glutamate synthase activity
ABK1_3437	COG0067	glutamate synthase
ABK1_3447	COG2226	methyltransferase
ABK1_3450	COG0770	UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase activity
ABK1_3451	COG0769	Catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanyl-D-glutamate (UMAG) in the biosynthesis of bacterial cell-wall peptidoglycan
ABK1_3458	COG0833	amino acid
ABK1_3470	COG0488	(ABC) transporter
ABK1_3472	COG4221	oxidoreductase activity
ABK1_3473	COG0659	secondary active sulfate transmembrane transporter activity
ABK1_3475	COG0745	RESPONSE REGULATOR receiver
ABK1_3477	COG0427	acetyl-CoA hydrolase
ABK1_3481	COG0118	IGPS catalyzes the conversion of PRFAR and glutamine to IGP, AICAR and glutamate. The HisH subunit provides the glutamine amidotransferase activity that produces the ammonia necessary to HisF for the synthesis of IGP and AICAR
ABK1_3489	COG2334	A protein kinase that phosphorylates Ser and Thr residues. Probably acts to suppress the effects of stress linked to accumulation of reactive oxygen species. Probably involved in the extracytoplasmic stress response
ABK1_3499	COG2207	Transcriptional regulator
ABK1_3500	COG3155	Displays glyoxalase activity, catalyzing the conversion of glyoxal to glycolate
ABK1_3503	COG2249	NAD(P)H dehydrogenase (quinone) activity
ABK1_3504	COG1733	regulation of RNA biosynthetic process
ABK1_3509	COG1733	regulation of RNA biosynthetic process
ABK1_3513	COG0667	Aldo Keto reductase
ABK1_3518	COG0583	DNA-binding transcription factor activity
ABK1_3519	COG2814	Major facilitator Superfamily
ABK1_3524	COG1335	isochorismatase
ABK1_3526	COG1012	belongs to the aldehyde dehydrogenase family
ABK1_3527	COG0160	Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family
ABK1_3529	COG1113	amino acid transport
ABK1_3531	COG1296	Branched-chain amino acid permease (Azaleucine resistance)
ABK1_3534	COG2814	Major facilitator Superfamily
ABK1_3536	COG0819	Catalyzes an amino-pyrimidine hydrolysis reaction at the C5' of the pyrimidine moiety of thiamine compounds, a reaction that is part of a thiamine salvage pathway
ABK1_3536	COG0351	phosphomethylpyrimidine kinase
ABK1_3536	COG0352	thiamine-phosphate diphosphorylase activity
ABK1_3540	COG1309	transcriptional regulator
ABK1_3541	COG0178	The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 uvrA and 2 uvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by uvrB, the uvrA molecules dissociate
ABK1_3542	COG3706	GGDEF domain
ABK1_3544	COG1292	Belongs to the BCCT transporter (TC 2.A.15) family
ABK1_3546	COG4147	Belongs to the sodium solute symporter (SSF) (TC 2.A.21) family
ABK1_3547	COG3162	membrane
ABK1_3548	COG0784	Response regulator, receiver
ABK1_3548	COG2198	Histidine kinase
ABK1_3548	COG2205	protein histidine kinase activity
ABK1_3553	COG1522	sequence-specific DNA binding
ABK1_3554	COG1335	isochorismatase
ABK1_3555	COG0365	Catalyzes the conversion of acetate into acetyl-CoA (AcCoA), an essential intermediate at the junction of anabolic and catabolic pathways. AcsA undergoes a two-step reaction. In the first half reaction, AcsA combines acetate with ATP to form acetyl-adenylate (AcAMP) intermediate. In the second half reaction, it can then transfer the acetyl group from AcAMP to the sulfhydryl group of CoA, forming the product AcCoA
ABK1_3557	COG0668	transmembrane transport
ABK1_3558	COG1385	rRNA (uridine-N3-)-methyltransferase activity
ABK1_3559	COG1519	Transferase
ABK1_3560	COG1902	pentaerythritol trinitrate reductase activity
ABK1_3564	COG0608	single-stranded DNA 5'-3' exodeoxyribonuclease activity
ABK1_3569	COG1853	conserved protein domain typically associated with flavoprotein oxygenases, DIM6 NTAB family
ABK1_3569	COG0426	domain, Protein
ABK1_3570	COG4774	siderophore transport
ABK1_3573	COG2119	membrane
ABK1_3575	COG0508	dehydrogenase complex catalyzes the overall conversion of
ABK1_3577	COG4942	peptidase
ABK1_3580	COG0206	Essential cell division protein that forms a contractile ring structure (Z ring) at the future cell division site. The regulation of the ring assembly controls the timing and the location of cell division. One of the functions of the FtsZ ring is to recruit other cell division proteins to the septum to produce a new cell wall between the dividing cells. Binds GTP and shows GTPase activity
ABK1_3582	COG1589	Essential cell division protein. May link together the upstream cell division proteins, which are predominantly cytoplasmic, with the downstream cell division proteins, which are predominantly periplasmic. May control correct divisome assembly
ABK1_3586	COG0189	ligase activity
ABK1_3590	COG0708	Exodeoxyribonuclease III
ABK1_3591	COG1393	Belongs to the ArsC family
ABK1_3595	COG3706	GGDEF domain
ABK1_3603	COG2233	PERMEase
ABK1_3605	COG0654	COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases
ABK1_3607	COG3194	Catalyzes the catabolism of the allantoin degradation intermediate (S)-ureidoglycolate, generating urea and glyoxylate. Involved in the utilization of allantoin as nitrogen source
ABK1_3609	COG3150	esterase
ABK1_3614	COG3179	chitinase
ABK1_3615	COG3501	Rhs element vgr protein
ABK1_3617	COG2918	glutathione biosynthetic process
ABK1_3620	COG2733	membrane
ABK1_3621	COG0436	Aminotransferase
ABK1_3622	COG0534	Mate efflux family protein
ABK1_3635	COG0753	catalase activity
ABK1_3639	COG0560	Phosphoserine phosphatase
ABK1_3639	COG3830	Belongs to the UPF0237 family
ABK1_3644	COG0611	Catalyzes the ATP-dependent phosphorylation of thiamine- monophosphate (TMP) to form thiamine-pyrophosphate (TPP), the active form of vitamin B1
ABK1_3646	COG1267	Lipid phosphatase which dephosphorylates phosphatidylglycerophosphate (PGP) to phosphatidylglycerol (PG)
ABK1_3648	COG0449	glutamine-fructose-6-phosphate transaminase (isomerizing) activity
ABK1_3649	COG0796	Provides the (R)-glutamate required for cell wall biosynthesis
ABK1_3650	COG0546	phosphoglycolate phosphatase activity
ABK1_3652	COG0010	Belongs to the arginase family
ABK1_3658	COG2188	Transcriptional regulator
ABK1_3660	COG0523	cobalamin synthesis protein
ABK1_3662	COG1113	amino acid transport
ABK1_3664	COG0625	glutathione transferase activity
ABK1_3668	COG1683	Conserved Protein
ABK1_3669	COG0534	Mate efflux family protein
ABK1_3670	COG0385	Bile acid
ABK1_3671	COG1335	isochorismatase
ABK1_3672	COG0329	Catalyzes the condensation of (S)-aspartate-beta- semialdehyde (S)-ASA and pyruvate to 4-hydroxy- tetrahydrodipicolinate (HTPA)
ABK1_3676	COG2116	formate transmembrane transporter activity
ABK1_3677	COG2256	atpase related to the helicase subunit of the holliday junction resolvase
ABK1_3678	COG2133	pyrroloquinoline quinone binding
ABK1_3679	COG2983	Belongs to the UPF0260 family
ABK1_3683	COG1194	a g-specific adenine glycosylase
ABK1_3687	COG2818	Glycosylase
ABK1_3688	COG1064	alcohol dehydrogenase
ABK1_3689	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
ABK1_3691	COG0583	DNA-binding transcription factor activity
ABK1_3692	COG0656	L-ascorbic acid biosynthetic process
ABK1_3693	COG2814	Major facilitator Superfamily
ABK1_3700	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
ABK1_3704	COG2233	PERMEase
ABK1_3712	COG0733	neurotransmitter:sodium symporter activity
ABK1_3728	COG0484	heat shock protein binding
ABK1_3747	COG0741	lytic transglycosylase activity
ABK1_3754	COG1651	Required for disulfide bond formation in some periplasmic proteins. Acts by transferring its disulfide bond to other proteins and is reduced in the process
ABK1_3793	COG1525	nuclease
ABK1_3805	COG1475	DNA binding
ABK1_3809	COG3853	Toxic anion resistance protein (TelA)