ABK1_0008 SM00382 ATPases associated with a variety of cellular activities ABK1_0011 SM00387 Histidine kinase-like ATPases ABK1_0011 SM00433 TopoisomeraseII ABK1_0013 SM00480 DNA polymerase III beta subunit ABK1_0014 SM00382 ATPases associated with a variety of cellular activities ABK1_0014 SM00760 Bacterial dnaA protein helix-turn-helix domain ABK1_0017 SM01234 ABK1_0017 ABK1_0030 SM00014 Acid phosphatase homologues ABK1_0034 SM01001 AIR carboxylase ABK1_0038 SM00235 Zinc-dependent metalloprotease ABK1_0039 SM00235 Zinc-dependent metalloprotease ABK1_0043 SM00849 Metallo-beta-lactamase superfamily ABK1_0048 SM00248 ankyrin repeats ABK1_0053 SM00904 Riboflavin kinase ABK1_0057 SM00382 ATPases associated with a variety of cellular activities ABK1_0060 SM00062 Bacterial periplasmic substrate-binding proteins ABK1_0061 SM00062 Bacterial periplasmic substrate-binding proteins ABK1_0078 SM00644 ABK1_0078 ABK1_0083 SM00226 Low molecular weight phosphatase family ABK1_0085 SM00984 UDP binding domain ABK1_0091 SM00858 ABK1_0091 ABK1_0101 SM00984 UDP binding domain ABK1_0106 SM00345 helix_turn_helix gluconate operon transcriptional repressor ABK1_0106 SM00895 ABK1_0106 ABK1_0111 SM00345 helix_turn_helix gluconate operon transcriptional repressor ABK1_0111 SM00895 ABK1_0111 ABK1_0120 SM00825 Beta-ketoacyl synthase ABK1_0128 SM00344 helix_turn_helix ASNC type ABK1_0130 SM01005 Alanine racemase, C-terminal domain ABK1_0146 SM00421 helix_turn_helix, Lux Regulon ABK1_0149 SM00823 Phosphopantetheine attachment site ABK1_0149 SM01294 ABK1_0149 ABK1_0150 SM00823 Phosphopantetheine attachment site ABK1_0150 SM00824 Thioesterase ABK1_0171 SM00836 DALR anticodon binding domain ABK1_0171 SM01016 Arginyl tRNA synthetase N terminal dom ABK1_0172 SM00919 Malic enzyme, NAD binding domain ABK1_0172 SM01274 ABK1_0172 ABK1_0177 SM00382 ATPases associated with a variety of cellular activities ABK1_0187 SM00382 ATPases associated with a variety of cellular activities ABK1_0191 SM00342 helix_turn_helix, arabinose operon control protein ABK1_0209 SM00422 helix_turn_helix, mercury resistance ABK1_0211 SM00729 Elongator protein 3, MiaB family, Radical SAM ABK1_0215 SM00641 Glycosyl hydrolases family 25 ABK1_0219 SM01091 Transporter associated domain ABK1_0223 SM00434 DNA Topoisomerase IV ABK1_0230 SM01130 ABK1_0230 ABK1_0231 SM01007 Class II Aldolase and Adducin N-terminal domain ABK1_0232 SM00345 helix_turn_helix gluconate operon transcriptional repressor ABK1_0236 SM00382 ATPases associated with a variety of cellular activities ABK1_0270 SM00938 Nitrogen regulatory protein P-II ABK1_0283 SM00245 tail specific protease ABK1_0284 SM00382 ATPases associated with a variety of cellular activities ABK1_0284 SM00448 cheY-homologous receiver domain ABK1_0285 SM00387 Histidine kinase-like ATPases ABK1_0285 SM00388 His Kinase A (phosphoacceptor) domain ABK1_0286 SM00421 helix_turn_helix, Lux Regulon ABK1_0286 SM00448 cheY-homologous receiver domain ABK1_0292 SM00899 ABK1_0292 ABK1_0310 SM00448 cheY-homologous receiver domain ABK1_0310 SM00850 LytTr DNA-binding domain ABK1_0316 SM00528 Domain in histone-like proteins of HNS family ABK1_0318 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. ABK1_0320 SM00240 Forkhead associated domain ABK1_0325 SM00738 In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold. ABK1_0325 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. ABK1_0326 SM00649 Ribosomal protein L11/L12 ABK1_0331 SM00663 RNA polymerase I subunit A N-terminus ABK1_0339 SM00387 Histidine kinase-like ATPases ABK1_0344 SM00422 helix_turn_helix, mercury resistance ABK1_0353 SM00278 Helix-hairpin-helix DNA-binding motif class 1 ABK1_0353 SM00465 GIY-YIG type nucleases (URI domain) ABK1_0356 SM00342 helix_turn_helix, arabinose operon control protein ABK1_0358 SM00346 helix_turn_helix isocitrate lyase regulation ABK1_0362 SM00732 Likely ribonuclease with RNase H fold. ABK1_0367 SM00967 RNA 2'-O ribose methyltransferase substrate binding ABK1_0376 SM00316 Ribosomal protein S1-like RNA-binding domain ABK1_0397 SM00382 ATPases associated with a variety of cellular activities ABK1_0399 SM01387 ABK1_0399 ABK1_0400 SM00316 Ribosomal protein S1-like RNA-binding domain ABK1_0400 SM00322 K homology RNA-binding domain ABK1_0403 SM00271 DnaJ molecular chaperone homology domain ABK1_0407 SM00487 DEAD-like helicases superfamily ABK1_0407 SM00490 helicase superfamily c-terminal domain ABK1_0415 SM00116 Domain in cystathionine beta-synthase and other proteins. ABK1_0415 SM01091 Transporter associated domain ABK1_0422 SM00849 Metallo-beta-lactamase superfamily ABK1_0435 SM00729 Elongator protein 3, MiaB family, Radical SAM ABK1_0439 SM00316 Ribosomal protein S1-like RNA-binding domain ABK1_0441 SM00363 S4 RNA-binding domain ABK1_0450 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. ABK1_0460 SM01329 ABK1_0460 ABK1_0463 SM00316 Ribosomal protein S1-like RNA-binding domain ABK1_0464 SM00342 helix_turn_helix, arabinose operon control protein ABK1_0466 SM00870 ABK1_0466 ABK1_0469 SM00859 Semialdehyde dehydrogenase, NAD binding domain ABK1_0475 SM00382 ATPases associated with a variety of cellular activities ABK1_0477 SM00829 Enoylreductase ABK1_0480 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain ABK1_0480 SM00437 Bacterial DNA topoisomerase I DNA-binding domain ABK1_0480 SM00493 ABK1_0480 ABK1_0484 SM00360 RNA recognition motif ABK1_0512 SM00671 Sel1-like repeats. ABK1_0515 SM00917 LeuA allosteric (dimerisation) domain ABK1_0516 SM00702 Prolyl 4-hydroxylase alpha subunit homologues. ABK1_0520 SM00382 ATPases associated with a variety of cellular activities ABK1_0520 SM00994 ClpX C4-type zinc finger ABK1_0520 SM01086 C-terminal, D2-small domain, of ClpB protein ABK1_0535 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. ABK1_0535 SM00245 tail specific protease ABK1_0537 SM00014 Acid phosphatase homologues ABK1_0539 SM00562 ABK1_0539 ABK1_0541 SM00028 Tetratricopeptide repeats ABK1_0546 SM00564 beta-propeller repeat ABK1_0549 SM00563 Phosphate acyltransferases ABK1_0565 SM00825 Beta-ketoacyl synthase ABK1_0567 SM00822 ABK1_0567 ABK1_0568 SM00825 Beta-ketoacyl synthase ABK1_0573 SM00450 Rhodanese Homology Domain ABK1_0575 SM00479 ABK1_0575 ABK1_0579 SM00382 ATPases associated with a variety of cellular activities ABK1_0589 SM00052 Putative diguanylate phosphodiesterase ABK1_0589 SM00267 diguanylate cyclase ABK1_0592 SM01236 ABK1_0592 ABK1_0607 SM01002 Alanine dehydrogenase/PNT, C-terminal domain ABK1_0607 SM01003 Alanine dehydrogenase/PNT, N-terminal domain ABK1_0615 SM00073 Histidine Phosphotransfer domain ABK1_0615 SM00387 Histidine kinase-like ATPases ABK1_0615 SM00388 His Kinase A (phosphoacceptor) domain ABK1_0615 SM00448 cheY-homologous receiver domain ABK1_0619 SM00954 Region found in RelA / SpoT proteins ABK1_0622 SM00278 Helix-hairpin-helix DNA-binding motif class 1 ABK1_0631 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain ABK1_0642 SM00873 B3/4 domain ABK1_0642 SM00874 tRNA synthetase B5 domain ABK1_0642 SM00896 Ferredoxin-fold anticodon binding domain ABK1_0643 SM00411 bacterial (prokaryotic) histone like domain ABK1_0645 SM00357 Cold shock protein domain ABK1_0645 SM00382 ATPases associated with a variety of cellular activities ABK1_0645 SM00959 Rho termination factor, N-terminal domain ABK1_0649 SM00977 TilS substrate C-terminal domain ABK1_0652 SM00279 Helix-hairpin-helix class 2 (Pol1 family) motifs ABK1_0652 SM00474 3'-5' exonuclease ABK1_0652 SM00475 5'-3' exonuclease ABK1_0652 SM00482 DNA polymerase A domain ABK1_0656 SM00382 ATPases associated with a variety of cellular activities ABK1_0658 SM00347 helix_turn_helix multiple antibiotic resistance protein ABK1_0662 SM00331 Sigma factor PP2C-like phosphatases ABK1_0710 SM00342 helix_turn_helix, arabinose operon control protein ABK1_0716 SM00903 Flavin reductase like domain ABK1_0725 SM00564 beta-propeller repeat ABK1_0738 SM00387 Histidine kinase-like ATPases ABK1_0744 SM00448 cheY-homologous receiver domain ABK1_0744 SM00862 Transcriptional regulatory protein, C terminal ABK1_0745 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain ABK1_0745 SM00387 Histidine kinase-like ATPases ABK1_0745 SM00388 His Kinase A (phosphoacceptor) domain ABK1_0747 SM00267 diguanylate cyclase ABK1_0752 SM00928 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region ABK1_0753 SM00926 Molybdopterin oxidoreductase Fe4S4 domain ABK1_0753 SM00929 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region ABK1_0762 SM00357 Cold shock protein domain ABK1_0790 SM00382 ATPases associated with a variety of cellular activities ABK1_0790 SM00962 SRP54-type protein, GTPase domain ABK1_0790 SM00963 SRP54-type protein, helical bundle domain ABK1_0794 SM00345 helix_turn_helix gluconate operon transcriptional repressor ABK1_0796 SM00771 ZipA, C-terminal domain (FtsZ-binding) ABK1_0797 SM00278 Helix-hairpin-helix DNA-binding motif class 1 ABK1_0797 SM00292 breast cancer carboxy-terminal domain ABK1_0797 SM00532 Ligase N family ABK1_0807 SM00363 S4 RNA-binding domain ABK1_0814 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. ABK1_0815 SM00822 ABK1_0815 ABK1_0817 SM00257 Lysin motif ABK1_0826 SM01400 ABK1_0826 ABK1_0828 SM00028 Tetratricopeptide repeats ABK1_0830 SM00400 zinc finger ABK1_0830 SM00493 ABK1_0830 ABK1_0832 SM00363 S4 RNA-binding domain ABK1_0840 SM01329 ABK1_0840 ABK1_0851 SM00825 Beta-ketoacyl synthase ABK1_0855 SM00838 Elongation factor G C-terminus ABK1_0855 SM00889 Elongation factor G, domain IV ABK1_0863 SM00843 ABK1_0863 ABK1_0871 SM00563 Phosphate acyltransferases ABK1_0885 SM00382 ATPases associated with a variety of cellular activities ABK1_0894 SM01004 Delta-aminolevulinic acid dehydratase ABK1_0899 SM00382 ATPases associated with a variety of cellular activities ABK1_0904 SM01130 ABK1_0904 ABK1_0923 SM01322 ABK1_0923 ABK1_0931 SM00346 helix_turn_helix isocitrate lyase regulation ABK1_0934 SM00822 ABK1_0934 ABK1_0953 SM00822 ABK1_0953 ABK1_0956 SM00861 Transketolase, pyrimidine binding domain ABK1_0957 SM01018 B12 binding domain ABK1_0970 SM00947 Carbonic anhydrase ABK1_0972 SM00382 ATPases associated with a variety of cellular activities ABK1_0992 SM01091 Transporter associated domain ABK1_1002 SM00988 UreE urease accessory protein, N-terminal domain ABK1_1011 SM00478 endonuclease III ABK1_1013 SM00839 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase ABK1_1017 SM00382 ATPases associated with a variety of cellular activities ABK1_1017 SM00464 Found in ATP-dependent protease La (LON) ABK1_1038 SM00530 Helix-turn-helix XRE-family like proteins ABK1_1073 SM00287 Bacterial SH3 domain homologues ABK1_1078 SM00530 Helix-turn-helix XRE-family like proteins ABK1_1098 SM01011 Aminopeptidase P, N-terminal domain ABK1_1102 SM00422 helix_turn_helix, mercury resistance ABK1_1114 SM00479 ABK1_1114 ABK1_1115 SM00257 Lysin motif ABK1_1119 SM00382 ATPases associated with a variety of cellular activities ABK1_1122 SM00479 ABK1_1122 ABK1_1124 SM00267 diguanylate cyclase ABK1_1140 SM00382 ATPases associated with a variety of cellular activities ABK1_1153 SM00996 S-adenosyl-L-homocysteine hydrolase ABK1_1153 SM00997 S-adenosyl-L-homocysteine hydrolase, NAD binding domain ABK1_1157 SM00729 Elongator protein 3, MiaB family, Radical SAM ABK1_1166 SM00342 helix_turn_helix, arabinose operon control protein ABK1_1176 SM00382 ATPases associated with a variety of cellular activities ABK1_1178 SM00479 ABK1_1178 ABK1_1186 SM00062 Bacterial periplasmic substrate-binding proteins ABK1_1189 SM00382 ATPases associated with a variety of cellular activities ABK1_1193 SM00345 helix_turn_helix gluconate operon transcriptional repressor ABK1_1198 SM00382 ATPases associated with a variety of cellular activities ABK1_1200 SM00448 cheY-homologous receiver domain ABK1_1200 SM00862 Transcriptional regulatory protein, C terminal ABK1_1201 SM00387 Histidine kinase-like ATPases ABK1_1201 SM00388 His Kinase A (phosphoacceptor) domain ABK1_1212 SM00830 Chorismate mutase type II ABK1_1225 SM00357 Cold shock protein domain ABK1_1226 SM00487 DEAD-like helicases superfamily ABK1_1226 SM00490 helicase superfamily c-terminal domain ABK1_1230 SM00855 Phosphoglycerate mutase family ABK1_1258 SM01034 Sensors of blue-light using FAD ABK1_1261 SM00342 helix_turn_helix, arabinose operon control protein ABK1_1265 SM00345 helix_turn_helix gluconate operon transcriptional repressor ABK1_1265 SM00895 ABK1_1265 ABK1_1269 SM00972 Spore Coat Protein U domain ABK1_1276 SM00972 Spore Coat Protein U domain ABK1_1295 SM00849 Metallo-beta-lactamase superfamily ABK1_1297 SM00382 ATPases associated with a variety of cellular activities ABK1_1297 SM00930 ABK1_1297 ABK1_1299 SM01209 ABK1_1299 ABK1_1299 SM01210 ABK1_1299 ABK1_1300 SM00798 AICARFT/IMPCHase bienzyme ABK1_1300 SM00851 MGS-like domain ABK1_1305 SM01228 ABK1_1305 ABK1_1310 SM00460 Transglutaminase/protease-like homologues ABK1_1312 SM01005 Alanine racemase, C-terminal domain ABK1_1335 SM00937 ABK1_1335 ABK1_1338 SM00062 Bacterial periplasmic substrate-binding proteins ABK1_1339 SM00342 helix_turn_helix, arabinose operon control protein ABK1_1340 SM00822 ABK1_1340 ABK1_1343 SM00903 Flavin reductase like domain ABK1_1346 SM00905 Dihydroneopterin aldolase ABK1_1351 SM00387 Histidine kinase-like ATPases ABK1_1351 SM00388 His Kinase A (phosphoacceptor) domain ABK1_1352 SM00448 cheY-homologous receiver domain ABK1_1352 SM00862 Transcriptional regulatory protein, C terminal ABK1_1353 SM01230 ABK1_1353 ABK1_1360 SM00411 bacterial (prokaryotic) histone like domain ABK1_1366 SM00382 ATPases associated with a variety of cellular activities ABK1_1369 SM00346 helix_turn_helix isocitrate lyase regulation ABK1_1371 SM00530 Helix-turn-helix XRE-family like proteins ABK1_1419 SM00363 S4 RNA-binding domain ABK1_1424 SM00853 MutL C terminal dimerisation domain ABK1_1424 SM01340 ABK1_1424 ABK1_1437 SM00862 Transcriptional regulatory protein, C terminal ABK1_1440 SM00382 ATPases associated with a variety of cellular activities ABK1_1442 SM00342 helix_turn_helix, arabinose operon control protein ABK1_1442 SM00871 Bacterial transcription activator, effector binding domain ABK1_1450 SM00830 Chorismate mutase type II ABK1_1451 SM00344 helix_turn_helix ASNC type ABK1_1466 SM00382 ATPases associated with a variety of cellular activities ABK1_1471 SM00831 Cation transporter/ATPase, N-terminus ABK1_1474 SM00344 helix_turn_helix ASNC type ABK1_1480 SM00822 ABK1_1480 ABK1_1485 SM00382 ATPases associated with a variety of cellular activities ABK1_1491 SM00226 Low molecular weight phosphatase family ABK1_1500 SM01236 ABK1_1500 ABK1_1502 SM00530 Helix-turn-helix XRE-family like proteins ABK1_1548 SM00287 Bacterial SH3 domain homologues ABK1_1558 SM01252 ABK1_1558 ABK1_1574 SM01230 ABK1_1574 ABK1_1582 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. ABK1_1584 SM00919 Malic enzyme, NAD binding domain ABK1_1584 SM01274 ABK1_1584 ABK1_1585 SM00052 Putative diguanylate phosphodiesterase ABK1_1585 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) ABK1_1585 SM00091 PAS domain ABK1_1585 SM00267 diguanylate cyclase ABK1_1609 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain ABK1_1610 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain ABK1_1612 SM00788 Adenylosuccinate synthetase ABK1_1616 SM00100 Cyclic nucleotide-monophosphate binding domain ABK1_1616 SM00419 helix_turn_helix, cAMP Regulatory protein ABK1_1620 SM00382 ATPases associated with a variety of cellular activities ABK1_1620 SM01086 C-terminal, D2-small domain, of ClpB protein ABK1_1623 SM00981 ABK1_1623 ABK1_1639 SM00382 ATPases associated with a variety of cellular activities ABK1_1639 SM00487 DEAD-like helicases superfamily ABK1_1639 SM00490 helicase superfamily c-terminal domain ABK1_1639 SM00847 Helicase associated domain (HA2) Add an annotation ABK1_1651 SM00422 helix_turn_helix, mercury resistance ABK1_1660 SM00530 Helix-turn-helix XRE-family like proteins ABK1_1664 SM00357 Cold shock protein domain ABK1_1678 SM00840 ABK1_1678 ABK1_1679 SM00116 Domain in cystathionine beta-synthase and other proteins. ABK1_1683 SM00382 ATPases associated with a variety of cellular activities ABK1_1685 SM00382 ATPases associated with a variety of cellular activities ABK1_1694 SM00533 DNA-binding domain of DNA mismatch repair MUTS family ABK1_1694 SM00534 ATPase domain of DNA mismatch repair MUTS family ABK1_1696 SM00344 helix_turn_helix ASNC type ABK1_1698 SM00052 Putative diguanylate phosphodiesterase ABK1_1703 SM00422 helix_turn_helix, mercury resistance ABK1_1718 SM00796 Allophanate hydrolase subunit 1 ABK1_1718 SM00797 Allophanate hydrolase subunit 2 ABK1_1719 SM00878 Biotin carboxylase C-terminal domain ABK1_1721 SM00671 Sel1-like repeats. ABK1_1729 SM00796 Allophanate hydrolase subunit 1 ABK1_1729 SM00797 Allophanate hydrolase subunit 2 ABK1_1729 SM00878 Biotin carboxylase C-terminal domain ABK1_1738 SM00382 ATPases associated with a variety of cellular activities ABK1_1755 SM00382 ATPases associated with a variety of cellular activities ABK1_1755 SM01086 C-terminal, D2-small domain, of ClpB protein ABK1_1762 SM00248 ankyrin repeats ABK1_1769 SM00422 helix_turn_helix, mercury resistance ABK1_1771 SM01130 ABK1_1771 ABK1_1773 SM00345 helix_turn_helix gluconate operon transcriptional repressor ABK1_1773 SM00895 ABK1_1773 ABK1_1778 SM00342 helix_turn_helix, arabinose operon control protein ABK1_1804 SM01060 ABK1_1804 ABK1_1807 SM00345 helix_turn_helix gluconate operon transcriptional repressor ABK1_1807 SM00895 ABK1_1807 ABK1_1810 SM00903 Flavin reductase like domain ABK1_1820 SM00346 helix_turn_helix isocitrate lyase regulation ABK1_1822 SM00345 helix_turn_helix gluconate operon transcriptional repressor ABK1_1822 SM00866 ABK1_1822 ABK1_1824 SM00382 ATPases associated with a variety of cellular activities ABK1_1834 SM00346 helix_turn_helix isocitrate lyase regulation ABK1_1838 SM00346 helix_turn_helix isocitrate lyase regulation ABK1_1845 SM00882 Coenzyme A transferase ABK1_1846 SM00882 Coenzyme A transferase ABK1_1855 SM00878 Biotin carboxylase C-terminal domain ABK1_1872 SM01236 ABK1_1872 ABK1_1873 SM01060 ABK1_1873 ABK1_1877 SM00384 DNA binding domain with preference for A/T rich regions ABK1_1881 SM00344 helix_turn_helix ASNC type ABK1_1885 SM00387 Histidine kinase-like ATPases ABK1_1885 SM00388 His Kinase A (phosphoacceptor) domain ABK1_1885 SM00448 cheY-homologous receiver domain ABK1_1886 SM00421 helix_turn_helix, Lux Regulon ABK1_1886 SM00448 cheY-homologous receiver domain ABK1_1890 SM00382 ATPases associated with a variety of cellular activities ABK1_1891 SM00062 Bacterial periplasmic substrate-binding proteins ABK1_1892 SM00062 Bacterial periplasmic substrate-binding proteins ABK1_1900 SM00450 Rhodanese Homology Domain ABK1_1901 SM00822 ABK1_1901 ABK1_1908 SM00345 helix_turn_helix gluconate operon transcriptional repressor ABK1_1920 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. ABK1_1924 SM00345 helix_turn_helix gluconate operon transcriptional repressor ABK1_1936 SM00062 Bacterial periplasmic substrate-binding proteins ABK1_1937 SM00382 ATPases associated with a variety of cellular activities ABK1_1942 SM00345 helix_turn_helix gluconate operon transcriptional repressor ABK1_1942 SM00895 ABK1_1942 ABK1_1948 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor ABK1_1958 SM00481 DNA polymerase alpha chain like domain ABK1_1959 SM00870 ABK1_1959 ABK1_1964 SM00342 helix_turn_helix, arabinose operon control protein ABK1_1967 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. ABK1_1974 SM00100 Cyclic nucleotide-monophosphate binding domain ABK1_1974 SM00419 helix_turn_helix, cAMP Regulatory protein ABK1_1978 SM00382 ATPases associated with a variety of cellular activities ABK1_1978 SM00930 ABK1_1978 ABK1_1985 SM00062 Bacterial periplasmic substrate-binding proteins ABK1_1988 SM00382 ATPases associated with a variety of cellular activities ABK1_1990 SM00344 helix_turn_helix ASNC type ABK1_1992 SM00563 Phosphate acyltransferases ABK1_1994 SM01236 ABK1_1994 ABK1_2011 SM00729 Elongator protein 3, MiaB family, Radical SAM ABK1_2011 SM00876 Biotin and Thiamin Synthesis associated domain ABK1_2016 SM00530 Helix-turn-helix XRE-family like proteins ABK1_2025 SM00861 Transketolase, pyrimidine binding domain ABK1_2027 SM00867 YceI-like domain ABK1_2034 SM00344 helix_turn_helix ASNC type ABK1_2038 SM00342 helix_turn_helix, arabinose operon control protein ABK1_2040 SM00382 ATPases associated with a variety of cellular activities ABK1_2044 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor ABK1_2046 SM00558 A domain family that is part of the cupin metalloenzyme superfamily. ABK1_2058 SM00470 ParB-like nuclease domain ABK1_2061 SM00382 ATPases associated with a variety of cellular activities ABK1_2073 SM00986 Uracil DNA glycosylase superfamily ABK1_2073 SM00987 UreE urease accessory protein, C-terminal domain ABK1_2078 SM00316 Ribosomal protein S1-like RNA-binding domain ABK1_2079 SM00411 bacterial (prokaryotic) histone like domain ABK1_2081 SM00934 Orotidine 5'-phosphate decarboxylase / HUMPS family ABK1_2084 SM00342 helix_turn_helix, arabinose operon control protein ABK1_2098 SM00382 ATPases associated with a variety of cellular activities ABK1_2109 SM00487 DEAD-like helicases superfamily ABK1_2109 SM00490 helicase superfamily c-terminal domain ABK1_2109 SM00982 ABK1_2109 ABK1_2109 SM01058 CarD-like/TRCF domain ABK1_2111 SM00044 Adenylyl- / guanylyl cyclase, catalytic domain ABK1_2114 SM00271 DnaJ molecular chaperone homology domain ABK1_2121 SM00411 bacterial (prokaryotic) histone like domain ABK1_2123 SM00342 helix_turn_helix, arabinose operon control protein ABK1_2141 SM01006 Siderophore biosynthesis protein domain ABK1_2147 SM00855 Phosphoglycerate mutase family ABK1_2159 SM00382 ATPases associated with a variety of cellular activities ABK1_2167 SM01324 ABK1_2167 ABK1_2178 SM00493 ABK1_2178 ABK1_2179 SM00341 Helicase and RNase D C-terminal ABK1_2179 SM00474 3'-5' exonuclease ABK1_2185 SM00382 ATPases associated with a variety of cellular activities ABK1_2190 SM00267 diguanylate cyclase ABK1_2193 SM00729 Elongator protein 3, MiaB family, Radical SAM ABK1_2195 SM00861 Transketolase, pyrimidine binding domain ABK1_2199 SM00829 Enoylreductase ABK1_2201 SM00382 ATPases associated with a variety of cellular activities ABK1_2202 SM00849 Metallo-beta-lactamase superfamily ABK1_2207 SM00342 helix_turn_helix, arabinose operon control protein ABK1_2211 SM00345 helix_turn_helix gluconate operon transcriptional repressor ABK1_2211 SM00866 ABK1_2211 ABK1_2216 SM00382 ATPases associated with a variety of cellular activities ABK1_2217 SM00567 E-Z type HEAT repeats ABK1_2228 SM00882 Coenzyme A transferase ABK1_2229 SM00882 Coenzyme A transferase ABK1_2234 SM00342 helix_turn_helix, arabinose operon control protein ABK1_2239 SM00903 Flavin reductase like domain ABK1_2241 SM00342 helix_turn_helix, arabinose operon control protein ABK1_2248 SM00382 ATPases associated with a variety of cellular activities ABK1_2257 SM00729 Elongator protein 3, MiaB family, Radical SAM ABK1_2262 SM00155 Phospholipase D. Active site motifs. ABK1_2267 SM00829 Enoylreductase ABK1_2284 SM00448 cheY-homologous receiver domain ABK1_2284 SM00862 Transcriptional regulatory protein, C terminal ABK1_2286 SM00387 Histidine kinase-like ATPases ABK1_2286 SM00388 His Kinase A (phosphoacceptor) domain ABK1_2288 SM00342 helix_turn_helix, arabinose operon control protein ABK1_2290 SM00822 ABK1_2290 ABK1_2291 SM00822 ABK1_2291 ABK1_2299 SM00530 Helix-turn-helix XRE-family like proteins ABK1_2310 SM00421 helix_turn_helix, Lux Regulon ABK1_2330 SM01400 ABK1_2330 ABK1_2332 SM00342 helix_turn_helix, arabinose operon control protein ABK1_2334 SM00382 ATPases associated with a variety of cellular activities ABK1_2338 SM00829 Enoylreductase ABK1_2341 SM00342 helix_turn_helix, arabinose operon control protein ABK1_2358 SM00346 helix_turn_helix isocitrate lyase regulation ABK1_2364 SM00345 helix_turn_helix gluconate operon transcriptional repressor ABK1_2364 SM00866 ABK1_2364 ABK1_2372 SM00912 haemagglutination activity domain ABK1_2389 SM00422 helix_turn_helix, mercury resistance ABK1_2395 SM00347 helix_turn_helix multiple antibiotic resistance protein ABK1_2400 SM01060 ABK1_2400 ABK1_2406 SM00829 Enoylreductase ABK1_2410 SM00091 PAS domain ABK1_2410 SM00382 ATPases associated with a variety of cellular activities ABK1_2420 SM00345 helix_turn_helix gluconate operon transcriptional repressor ABK1_2420 SM00895 ABK1_2420 ABK1_2423 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain ABK1_2426 SM00882 Coenzyme A transferase ABK1_2427 SM00882 Coenzyme A transferase ABK1_2435 SM00342 helix_turn_helix, arabinose operon control protein ABK1_2436 SM00903 Flavin reductase like domain ABK1_2445 SM00347 helix_turn_helix multiple antibiotic resistance protein ABK1_2449 SM00855 Phosphoglycerate mutase family ABK1_2453 SM00346 helix_turn_helix isocitrate lyase regulation ABK1_2454 SM00849 Metallo-beta-lactamase superfamily ABK1_2458 SM00564 beta-propeller repeat ABK1_2460 SM00710 Parallel beta-helix repeats ABK1_2467 SM00998 Adenylosuccinate lyase C-terminus ABK1_2469 SM00882 Coenzyme A transferase ABK1_2470 SM00882 Coenzyme A transferase ABK1_2474 SM01192 ABK1_2474 ABK1_2474 SM01193 ABK1_2474 ABK1_2487 SM00382 ATPases associated with a variety of cellular activities ABK1_2487 SM01086 C-terminal, D2-small domain, of ClpB protein ABK1_2490 SM00859 Semialdehyde dehydrogenase, NAD binding domain ABK1_2498 SM01264 ABK1_2498 ABK1_2511 SM00382 ATPases associated with a variety of cellular activities ABK1_2511 SM00962 SRP54-type protein, GTPase domain ABK1_2511 SM00963 SRP54-type protein, helical bundle domain ABK1_2516 SM00116 Domain in cystathionine beta-synthase and other proteins. ABK1_2531 SM00347 helix_turn_helix multiple antibiotic resistance protein ABK1_2533 SM00052 Putative diguanylate phosphodiesterase ABK1_2533 SM00091 PAS domain ABK1_2533 SM00267 diguanylate cyclase ABK1_2542 SM00344 helix_turn_helix ASNC type ABK1_2548 SM00363 S4 RNA-binding domain ABK1_2549 SM00382 ATPases associated with a variety of cellular activities ABK1_2555 SM00935 Outer membrane protein (OmpH-like) ABK1_2557 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. ABK1_2563 SM00729 Elongator protein 3, MiaB family, Radical SAM ABK1_2565 SM00091 PAS domain ABK1_2565 SM00387 Histidine kinase-like ATPases ABK1_2565 SM00388 His Kinase A (phosphoacceptor) domain ABK1_2566 SM00382 ATPases associated with a variety of cellular activities ABK1_2566 SM00448 cheY-homologous receiver domain ABK1_2584 SM00345 helix_turn_helix gluconate operon transcriptional repressor ABK1_2586 SM00852 Probable molybdopterin binding domain ABK1_2587 SM00852 Probable molybdopterin binding domain ABK1_2590 SM00729 Elongator protein 3, MiaB family, Radical SAM ABK1_2591 SM00926 Molybdopterin oxidoreductase Fe4S4 domain ABK1_2593 SM00926 Molybdopterin oxidoreductase Fe4S4 domain ABK1_2596 SM00448 cheY-homologous receiver domain ABK1_2596 SM01012 ABK1_2596 ABK1_2601 SM00878 Biotin carboxylase C-terminal domain ABK1_2607 SM01040 BRO family, N-terminal domain ABK1_2674 SM00463 Small MutS-related domain ABK1_2676 SM01008 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain ABK1_2677 SM01092 CO dehydrogenase flavoprotein C-terminal domain ABK1_2691 SM00382 ATPases associated with a variety of cellular activities ABK1_2692 SM00382 ATPases associated with a variety of cellular activities ABK1_2702 SM00382 ATPases associated with a variety of cellular activities ABK1_2716 SM00829 Enoylreductase ABK1_2717 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain ABK1_2750 SM00841 Elongation factor P, C-terminal ABK1_2750 SM01185 ABK1_2750 ABK1_2753 SM00052 Putative diguanylate phosphodiesterase ABK1_2760 SM00257 Lysin motif ABK1_2764 SM00936 Penicillin-binding protein 5, C-terminal domain ABK1_2773 SM00382 ATPases associated with a variety of cellular activities ABK1_2780 SM00344 helix_turn_helix ASNC type ABK1_2791 SM00487 DEAD-like helicases superfamily ABK1_2791 SM00490 helicase superfamily c-terminal domain ABK1_2797 SM00880 ABK1_2797 ABK1_2797 SM01118 ABK1_2797 ABK1_2807 SM01329 ABK1_2807 ABK1_2827 SM00359 Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase ABK1_2833 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain ABK1_2836 SM00487 DEAD-like helicases superfamily ABK1_2836 SM00490 helicase superfamily c-terminal domain ABK1_2838 SM00267 diguanylate cyclase ABK1_2850 SM00358 Double-stranded RNA binding motif ABK1_2853 SM00838 Elongation factor G C-terminus ABK1_2855 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. ABK1_2865 SM00382 ATPases associated with a variety of cellular activities ABK1_2880 SM01211 ABK1_2880 ABK1_2881 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. ABK1_2882 SM00278 Helix-hairpin-helix DNA-binding motif class 1 ABK1_2883 SM00382 ATPases associated with a variety of cellular activities ABK1_2907 SM00849 Metallo-beta-lactamase superfamily ABK1_2908 SM00382 ATPases associated with a variety of cellular activities ABK1_2923 SM00434 DNA Topoisomerase IV ABK1_2924 SM00893 Electron transfer flavoprotein domain ABK1_2925 SM00893 Electron transfer flavoprotein domain ABK1_2933 SM00382 ATPases associated with a variety of cellular activities ABK1_2960 SM00849 Metallo-beta-lactamase superfamily ABK1_2963 SM00883 Chaperonin 10 Kd subunit ABK1_2966 SM00046 Diacylglycerol kinase catalytic domain (presumed) ABK1_2978 SM00382 ATPases associated with a variety of cellular activities ABK1_2980 SM01103 ABK1_2980 ABK1_2983 SM01097 Carbamoyl-phosphate synthase small chain, CPSase domain ABK1_2984 SM00851 MGS-like domain ABK1_2984 SM01096 Carbamoyl-phosphate synthetase large chain, oligomerisation domain ABK1_2990 SM00854 Bacterial capsule synthesis protein PGA_cap ABK1_3005 SM00881 CoA binding domain ABK1_3009 SM00861 Transketolase, pyrimidine binding domain ABK1_3016 SM00450 Rhodanese Homology Domain ABK1_3037 SM00014 Acid phosphatase homologues ABK1_3044 SM00822 ABK1_3044 ABK1_3053 SM00387 Histidine kinase-like ATPases ABK1_3053 SM00388 His Kinase A (phosphoacceptor) domain ABK1_3054 SM00448 cheY-homologous receiver domain ABK1_3054 SM00862 Transcriptional regulatory protein, C terminal ABK1_3058 SM00563 Phosphate acyltransferases ABK1_3061 SM00244 prohibitin homologues ABK1_3068 SM00829 Enoylreductase ABK1_3069 SM00342 helix_turn_helix, arabinose operon control protein ABK1_3073 SM00342 helix_turn_helix, arabinose operon control protein ABK1_3080 SM00316 Ribosomal protein S1-like RNA-binding domain ABK1_3087 SM00845 GatB domain ABK1_3111 SM00073 Histidine Phosphotransfer domain ABK1_3111 SM00260 Two component signalling adaptor domain ABK1_3111 SM00387 Histidine kinase-like ATPases ABK1_3111 SM00448 cheY-homologous receiver domain ABK1_3111 SM01231 ABK1_3111 ABK1_3112 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). ABK1_3113 SM00260 Two component signalling adaptor domain ABK1_3114 SM00448 cheY-homologous receiver domain ABK1_3115 SM00448 cheY-homologous receiver domain ABK1_3126 SM00671 Sel1-like repeats. ABK1_3131 SM00898 Formamidopyrimidine-DNA glycosylase N-terminal domain ABK1_3131 SM01232 ABK1_3131 ABK1_3135 SM00838 Elongation factor G C-terminus ABK1_3148 SM00564 beta-propeller repeat ABK1_3152 SM00342 helix_turn_helix, arabinose operon control protein ABK1_3163 SM00957 SecA DEAD-like domain ABK1_3163 SM00958 SecA preprotein cross-linking domain ABK1_3165 SM00849 Metallo-beta-lactamase superfamily ABK1_3171 SM00342 helix_turn_helix, arabinose operon control protein ABK1_3184 SM00448 cheY-homologous receiver domain ABK1_3184 SM00862 Transcriptional regulatory protein, C terminal ABK1_3185 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain ABK1_3185 SM00387 Histidine kinase-like ATPases ABK1_3185 SM00388 His Kinase A (phosphoacceptor) domain ABK1_3210 SM00387 Histidine kinase-like ATPases ABK1_3210 SM00388 His Kinase A (phosphoacceptor) domain ABK1_3218 SM01323 ABK1_3218 ABK1_3224 SM00481 DNA polymerase alpha chain like domain ABK1_3229 SM00450 Rhodanese Homology Domain ABK1_3239 SM00267 diguanylate cyclase ABK1_3242 SM00155 Phospholipase D. Active site motifs. ABK1_3243 SM00563 Phosphate acyltransferases ABK1_3249 SM00650 Ribosomal RNA adenine dimethylases ABK1_3256 SM00878 Biotin carboxylase C-terminal domain ABK1_3269 SM00702 Prolyl 4-hydroxylase alpha subunit homologues. ABK1_3275 SM00729 Elongator protein 3, MiaB family, Radical SAM ABK1_3285 SM00342 helix_turn_helix, arabinose operon control protein ABK1_3291 SM00316 Ribosomal protein S1-like RNA-binding domain ABK1_3291 SM00955 ABK1_3291 ABK1_3303 SM00662 RNA polymerases D ABK1_3304 SM00363 S4 RNA-binding domain ABK1_3304 SM01390 ABK1_3304 ABK1_3317 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. ABK1_3318 SM01374 ABK1_3318 ABK1_3322 SM00322 K homology RNA-binding domain ABK1_3325 SM01382 ABK1_3325 ABK1_3325 SM01383 ABK1_3325 ABK1_3329 SM01403 ABK1_3329 ABK1_3339 SM00563 Phosphate acyltransferases ABK1_3342 SM00487 DEAD-like helicases superfamily ABK1_3342 SM00490 helicase superfamily c-terminal domain ABK1_3351 SM00382 ATPases associated with a variety of cellular activities ABK1_3353 SM00487 DEAD-like helicases superfamily ABK1_3353 SM00490 helicase superfamily c-terminal domain ABK1_3355 SM00861 Transketolase, pyrimidine binding domain ABK1_3363 SM00116 Domain in cystathionine beta-synthase and other proteins. ABK1_3383 SM00839 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase ABK1_3421 SM00072 Guanylate kinase homologues. ABK1_3422 SM01409 ABK1_3422 ABK1_3423 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. ABK1_3423 SM00954 Region found in RelA / SpoT proteins ABK1_3441 SM00965 Secretin and TonB N terminus short domain ABK1_3445 SM00842 Cell division protein FtsA ABK1_3469 SM00671 Sel1-like repeats. ABK1_3470 SM00382 ATPases associated with a variety of cellular activities ABK1_3473 SM00947 Carbonic anhydrase ABK1_3474 SM00316 Ribosomal protein S1-like RNA-binding domain ABK1_3474 SM00732 Likely ribonuclease with RNase H fold. ABK1_3475 SM00448 cheY-homologous receiver domain ABK1_3475 SM00862 Transcriptional regulatory protein, C terminal ABK1_3476 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain ABK1_3476 SM00387 Histidine kinase-like ATPases ABK1_3476 SM00388 His Kinase A (phosphoacceptor) domain ABK1_3483 SM00474 3'-5' exonuclease ABK1_3485 SM00530 Helix-turn-helix XRE-family like proteins ABK1_3488 SM00357 Cold shock protein domain ABK1_3492 SM00342 helix_turn_helix, arabinose operon control protein ABK1_3496 SM00477 DNA/RNA non-specific endonuclease ABK1_3496 SM00892 DNA/RNA non-specific endonuclease ABK1_3499 SM00342 helix_turn_helix, arabinose operon control protein ABK1_3512 SM00342 helix_turn_helix, arabinose operon control protein ABK1_3528 SM00345 helix_turn_helix gluconate operon transcriptional repressor ABK1_3530 SM00530 Helix-turn-helix XRE-family like proteins ABK1_3539 SM00829 Enoylreductase ABK1_3542 SM00267 diguanylate cyclase ABK1_3548 SM00387 Histidine kinase-like ATPases ABK1_3548 SM00388 His Kinase A (phosphoacceptor) domain ABK1_3548 SM00448 cheY-homologous receiver domain ABK1_3550 SM00421 helix_turn_helix, Lux Regulon ABK1_3550 SM00448 cheY-homologous receiver domain ABK1_3553 SM00344 helix_turn_helix ASNC type ABK1_3561 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor ABK1_3562 SM00937 ABK1_3562 ABK1_3567 SM00116 Domain in cystathionine beta-synthase and other proteins. ABK1_3567 SM01240 ABK1_3567 ABK1_3569 SM00849 Metallo-beta-lactamase superfamily ABK1_3580 SM00864 Tubulin/FtsZ family, GTPase domain ABK1_3580 SM00865 Tubulin/FtsZ family, C-terminal domain ABK1_3581 SM00842 Cell division protein FtsA ABK1_3595 SM00267 diguanylate cyclase ABK1_3608 SM00387 Histidine kinase-like ATPases ABK1_3608 SM00433 TopoisomeraseII ABK1_3614 SM00257 Lysin motif ABK1_3625 SM00448 cheY-homologous receiver domain ABK1_3625 SM00862 Transcriptional regulatory protein, C terminal ABK1_3626 SM00387 Histidine kinase-like ATPases ABK1_3626 SM00388 His Kinase A (phosphoacceptor) domain ABK1_3632 SM00450 Rhodanese Homology Domain ABK1_3634 SM00248 ankyrin repeats ABK1_3635 SM01060 ABK1_3635 ABK1_3658 SM00345 helix_turn_helix gluconate operon transcriptional repressor ABK1_3658 SM00866 ABK1_3658 ABK1_3660 SM00833 Cobalamin synthesis protein cobW C-terminal domain ABK1_3666 SM00346 helix_turn_helix isocitrate lyase regulation ABK1_3672 SM01130 ABK1_3672 ABK1_3677 SM00382 ATPases associated with a variety of cellular activities ABK1_3683 SM00478 endonuclease III ABK1_3683 SM00525 ABK1_3683 ABK1_3688 SM00829 Enoylreductase ABK1_3689 SM00345 helix_turn_helix gluconate operon transcriptional repressor ABK1_3697 SM00271 DnaJ molecular chaperone homology domain ABK1_3718 SM00530 Helix-turn-helix XRE-family like proteins ABK1_3744 SM00857 Resolvase, N terminal domain ABK1_3772 SM00470 ParB-like nuclease domain ABK1_3793 SM00318 Staphylococcal nuclease homologues ABK1_3794 SM00528 Domain in histone-like proteins of HNS family ABK1_3805 SM00470 ParB-like nuclease domain