locus-tag class description NIY04_00005 IPR003593 AAA+ ATPase domain NIY04_00005 IPR001957 Chromosomal replication control, initiator DnaA NIY04_00005 IPR020591 Chromosomal replication control, initiator DnaA-like NIY04_00005 IPR018312 Chromosomal replication control, initiator DnaA, conserved site NIY04_00005 IPR013317 Chromosomal replication initiator protein DnaA NIY04_00005 IPR013159 Chromosomal replication initiator, DnaA C-terminal NIY04_00005 IPR024633 DnaA N-terminal domain NIY04_00005 IPR038454 DnaA, N-terminal domain superfamily NIY04_00005 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIY04_00005 IPR010921 Trp repressor/replication initiator NIY04_00010 IPR022634 DNA polymerase III, beta sliding clamp, N-terminal NIY04_00010 IPR022637 DNA polymerase III, beta sliding clamp, central NIY04_00010 IPR001001 DNA polymerase III, beta sliding clamp NIY04_00010 IPR022635 DNA polymerase III, beta sliding clamp, C-terminal NIY04_00015 IPR001238 DNA-binding, RecF NIY04_00015 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIY04_00015 IPR003395 RecF/RecN/SMC, N-terminal NIY04_00015 IPR042174 DNA-binding RecF, domain 2 NIY04_00020 IPR013760 DNA topoisomerase, type IIA-like domain superfamily NIY04_00020 IPR034160 DNA gyrase subunit B, TOPRIM domain NIY04_00020 IPR006171 TOPRIM domain NIY04_00020 IPR018522 DNA topoisomerase, type IIA, conserved site NIY04_00020 IPR013506 DNA topoisomerase, type IIA, subunit B, domain 2 NIY04_00020 IPR013759 DNA topoisomerase, type IIA, subunit B, C-terminal NIY04_00020 IPR001241 DNA topoisomerase, type IIA NIY04_00020 IPR036890 Histidine kinase/HSP90-like ATPase superfamily NIY04_00020 IPR020568 Ribosomal protein S5 domain 2-type fold NIY04_00020 IPR003594 Histidine kinase/HSP90-like ATPase NIY04_00020 IPR041423 DNA gyrase subunit B insert domain NIY04_00020 IPR011557 DNA gyrase, subunit B NIY04_00020 IPR002288 DNA gyrase B subunit, C-terminal NIY04_00020 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup NIY04_00030 IPR032818 DedA family NIY04_00030 IPR032816 SNARE associated Golgi protein NIY04_00035 IPR003593 AAA+ ATPase domain NIY04_00035 IPR032781 ABC-transporter extension domain NIY04_00035 IPR003439 ABC transporter-like NIY04_00035 IPR017871 ABC transporter, conserved site NIY04_00035 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIY04_00040 IPR038404 TRAP transporter solute receptor DctP superfamily NIY04_00045 IPR038404 TRAP transporter solute receptor DctP superfamily NIY04_00050 IPR038404 TRAP transporter solute receptor DctP superfamily NIY04_00055 IPR023063 FeS cluster insertion protein ErpA NIY04_00055 IPR017870 FeS cluster insertion, C-terminal, conserved site NIY04_00055 IPR035903 HesB-like domain superfamily NIY04_00055 IPR016092 FeS cluster insertion protein NIY04_00055 IPR000361 FeS cluster biogenesis NIY04_00060 IPR029058 Alpha/Beta hydrolase fold NIY04_00060 IPR000073 Alpha/beta hydrolase fold-1 NIY04_00060 IPR000639 Epoxide hydrolase-like NIY04_00065 IPR005338 Anhydro-N-acetylmuramic acid kinase NIY04_00070 IPR024108 Tyrosine-tRNA ligase, bacterial-type, type 2 NIY04_00070 IPR024088 Tyrosine-tRNA ligase, bacterial-type NIY04_00070 IPR002307 Tyrosine-tRNA ligase NIY04_00070 IPR036986 RNA-binding S4 domain superfamily NIY04_00070 IPR002942 RNA-binding S4 domain NIY04_00070 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold NIY04_00070 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site NIY04_00070 IPR002305 Aminoacyl-tRNA synthetase, class Ic NIY04_00110 IPR000175 Sodium:neurotransmitter symporter NIY04_00110 IPR037272 Sodium:neurotransmitter symporter superfamily NIY04_00120 IPR035926 NusB-like superfamily NIY04_00120 IPR006027 NusB/RsmB/TIM44 NIY04_00120 IPR023267 RNA (C5-cytosine) methyltransferase NIY04_00120 IPR004573 rRNA small subunit methyltransferase B NIY04_00120 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase NIY04_00120 IPR018314 Bacterial Fmu (Sun)/eukaryotic nucleolar NOL1/Nop2p, conserved site NIY04_00120 IPR001678 SAM-dependent methyltransferase RsmB/NOP2-type NIY04_00125 IPR005794 Methionyl-tRNA formyltransferase NIY04_00125 IPR005793 Formyl transferase, C-terminal NIY04_00125 IPR037022 Formyl transferase, C-terminal domain superfamily NIY04_00125 IPR002376 Formyl transferase, N-terminal NIY04_00125 IPR036477 Formyl transferase, N-terminal domain superfamily NIY04_00125 IPR011034 Formyl transferase-like, C-terminal domain superfamily NIY04_00125 IPR041711 Methionyl-tRNA formyltransferase, N-terminal domain NIY04_00130 IPR020558 Dihydroxy-acid/6-phosphogluconate dehydratase, conserved site NIY04_00130 IPR037237 IlvD/EDD, N-terminal domain NIY04_00130 IPR042096 Dihydroxy-acid dehydratase, C-terminal NIY04_00130 IPR004404 Dihydroxy-acid dehydratase NIY04_00130 IPR000581 Dihydroxy-acid/6-phosphogluconate dehydratase NIY04_00145 IPR036390 Winged helix DNA-binding domain superfamily NIY04_00145 IPR005119 LysR, substrate-binding NIY04_00145 IPR000847 Transcription regulator HTH, LysR NIY04_00145 IPR036388 Winged helix-like DNA-binding domain superfamily NIY04_00150 IPR019918 Pyrimidine permease RutG, predicted NIY04_00150 IPR006043 Xanthine/uracil/vitamin C permease NIY04_00150 IPR006042 Xanthine/uracil permease NIY04_00155 IPR022805 Phosphoenolpyruvate carboxylase, bacterial/plant-type NIY04_00155 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain superfamily NIY04_00155 IPR033129 Phosphoenolpyruvate carboxylase, His active site NIY04_00155 IPR018129 Phosphoenolpyruvate carboxylase, Lys active site NIY04_00155 IPR021135 Phosphoenolpyruvate carboxylase NIY04_00160 IPR023772 DNA-binding HTH domain, TetR-type, conserved site NIY04_00160 IPR009057 Homeobox-like domain superfamily NIY04_00160 IPR001647 DNA-binding HTH domain, TetR-type NIY04_00160 IPR036271 Tetracyclin repressor-like, C-terminal domain superfamily NIY04_00160 IPR013572 Transcription regulator MAATS, C-terminal NIY04_00165 IPR032317 RND efflux pump, membrane fusion protein, barrel-sandwich domain NIY04_00165 IPR006143 RND efflux pump, membrane fusion protein NIY04_00165 IPR030190 Macrolide export protein MacA NIY04_00170 IPR001036 Acriflavin resistance protein NIY04_00170 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains NIY04_00180 IPR001623 DnaJ domain NIY04_00180 IPR018253 DnaJ domain, conserved site NIY04_00180 IPR008971 HSP40/DnaJ peptide-binding NIY04_00180 IPR002939 Chaperone DnaJ, C-terminal NIY04_00180 IPR001305 Heat shock protein DnaJ, cysteine-rich domain NIY04_00180 IPR036410 Heat shock protein DnaJ, cysteine-rich domain superfamily NIY04_00180 IPR036869 Chaperone J-domain superfamily NIY04_00180 IPR012724 Chaperone DnaJ NIY04_00190 IPR022664 Dihydrodipicolinate reductase, conserved site NIY04_00190 IPR022663 Dihydrodipicolinate reductase, C-terminal NIY04_00190 IPR000846 Dihydrodipicolinate reductase, N-terminal NIY04_00190 IPR036291 NAD(P)-binding domain superfamily NIY04_00190 IPR023940 Dihydrodipicolinate reductase NIY04_00200 IPR036259 MFS transporter superfamily NIY04_00200 IPR011701 Major facilitator superfamily NIY04_00200 IPR020846 Major facilitator superfamily domain NIY04_00205 IPR018170 Aldo/keto reductase, conserved site NIY04_00205 IPR020471 Aldo/keto reductase NIY04_00205 IPR023210 NADP-dependent oxidoreductase domain NIY04_00205 IPR036812 NADP-dependent oxidoreductase domain superfamily NIY04_00210 IPR005119 LysR, substrate-binding NIY04_00210 IPR000847 Transcription regulator HTH, LysR NIY04_00210 IPR036388 Winged helix-like DNA-binding domain superfamily NIY04_00210 IPR036390 Winged helix DNA-binding domain superfamily NIY04_00225 IPR004839 Aminotransferase, class I/classII NIY04_00225 IPR015424 Pyridoxal phosphate-dependent transferase NIY04_00225 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 NIY04_00225 IPR036390 Winged helix DNA-binding domain superfamily NIY04_00225 IPR036388 Winged helix-like DNA-binding domain superfamily NIY04_00225 IPR000524 Transcription regulator HTH, GntR NIY04_00225 IPR015421 Pyridoxal phosphate-dependent transferase, major domain NIY04_00230 IPR013149 Alcohol dehydrogenase, C-terminal NIY04_00230 IPR020843 Polyketide synthase, enoylreductase domain NIY04_00230 IPR036291 NAD(P)-binding domain superfamily NIY04_00230 IPR011032 GroES-like superfamily NIY04_00230 IPR029752 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain conserved site 1 NIY04_00230 IPR002328 Alcohol dehydrogenase, zinc-type, conserved site NIY04_00230 IPR013154 Alcohol dehydrogenase, N-terminal NIY04_00235 IPR004597 DNA-3-methyladenine glycosylase I NIY04_00235 IPR011257 DNA glycosylase NIY04_00235 IPR005019 Methyladenine glycosylase NIY04_00250 IPR005760 A/G-specific adenine glycosylase MutY NIY04_00250 IPR011257 DNA glycosylase NIY04_00250 IPR004036 Endonuclease III-like, conserved site-2 NIY04_00250 IPR003651 Endonuclease III-like, iron-sulphur cluster loop motif NIY04_00250 IPR004035 Endonuclease III, iron-sulphur binding site NIY04_00250 IPR003265 HhH-GPD domain NIY04_00250 IPR000445 Helix-hairpin-helix motif NIY04_00250 IPR023170 Helix-turn-helix, base-excision DNA repair, C-terminal NIY04_00250 IPR029119 MutY, C-terminal NIY04_00250 IPR015797 NUDIX hydrolase-like domain superfamily NIY04_00265 IPR009760 Protein of unknown function DUF1328 NIY04_00270 IPR005358 Putative zinc- or iron-chelating domain containing protein NIY04_00270 IPR008228 Uncharacterised conserved protein UCP006173 NIY04_00275 IPR012938 Glucose/Sorbosone dehydrogenase NIY04_00275 IPR011041 Soluble quinoprotein glucose/sorbosone dehydrogenase NIY04_00275 IPR011042 Six-bladed beta-propeller, TolB-like NIY04_00280 IPR032423 AAA C-terminal domain NIY04_00280 IPR008921 DNA polymerase III, clamp loader complex, gamma/delta/delta subunit, C-terminal NIY04_00280 IPR021886 MgsA AAA+ ATPase C-terminal NIY04_00280 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIY04_00280 IPR003593 AAA+ ATPase domain NIY04_00280 IPR003959 ATPase, AAA-type, core NIY04_00285 IPR023271 Aquaporin-like NIY04_00285 IPR000292 Formate/nitrite transporter NIY04_00295 IPR028923 SAICAR synthetase/ADE2, N-terminal NIY04_00295 IPR033934 Bacterial and archaeal 5-aminoimidazole-4-(N-succinylcarboxamide) ribonucleotide synthase NIY04_00295 IPR001636 Phosphoribosylaminoimidazole-succinocarboxamide synthase NIY04_00295 IPR018236 SAICAR synthetase, conserved site NIY04_00305 IPR013785 Aldolase-type TIM barrel NIY04_00305 IPR005263 4-hydroxy-tetrahydrodipicolinate synthase, DapA NIY04_00305 IPR002220 DapA-like NIY04_00305 IPR020625 Schiff base-forming aldolase, active site NIY04_00305 IPR020624 Schiff base-forming aldolase, conserved site NIY04_00310 IPR036380 Isochorismatase-like superfamily NIY04_00310 IPR000868 Isochorismatase-like NIY04_00315 IPR002657 Bile acid:sodium symporter/arsenical resistance protein Acr3 NIY04_00315 IPR004710 Bile acid:sodium symporter NIY04_00315 IPR038770 Sodium/solute symporter superfamily NIY04_00320 IPR002528 Multi antimicrobial extrusion protein NIY04_00325 IPR007553 Domain of unknown function DUF523 NIY04_00330 IPR037523 Vicinal oxygen chelate (VOC) domain NIY04_00330 IPR004360 Glyoxalase/fosfomycin resistance/dioxygenase domain NIY04_00330 IPR041736 4-hydroxyphenylpyruvate dioxygenase, N-terminal NIY04_00330 IPR041735 4-hydroxyphenylpyruvate dioxygenase, C-terminal NIY04_00330 IPR005956 4-hydroxyphenylpyruvate dioxygenase NIY04_00330 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase NIY04_00340 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase NIY04_00340 IPR022858 Metallothiol transferase FosB NIY04_00340 IPR037523 Vicinal oxygen chelate (VOC) domain NIY04_00340 IPR004360 Glyoxalase/fosfomycin resistance/dioxygenase domain NIY04_00345 IPR010987 Glutathione S-transferase, C-terminal-like NIY04_00345 IPR040079 Glutathione Transferase family NIY04_00345 IPR004045 Glutathione S-transferase, N-terminal NIY04_00345 IPR004046 Glutathione S-transferase, C-terminal NIY04_00345 IPR036282 Glutathione S-transferase, C-terminal domain superfamily NIY04_00345 IPR034333 Glutathione S-transferases, class Zeta , N-terminal NIY04_00345 IPR036249 Thioredoxin-like superfamily NIY04_00345 IPR034330 Glutathione S-transferases, class Zeta , C-terminal NIY04_00345 IPR005955 Glutathione S-transferases, class Zeta NIY04_00355 IPR004841 Amino acid permease/ SLC12A domain NIY04_00355 IPR004840 Amino acid permease, conserved site NIY04_00365 IPR003495 CobW/HypB/UreG, nucleotide-binding domain NIY04_00365 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIY04_00365 IPR011629 Cobalamin (vitamin B12) biosynthesis CobW-like, C-terminal NIY04_00375 IPR036390 Winged helix DNA-binding domain superfamily NIY04_00375 IPR036388 Winged helix-like DNA-binding domain superfamily NIY04_00375 IPR011663 UbiC transcription regulator-associated NIY04_00375 IPR000524 Transcription regulator HTH, GntR NIY04_00375 IPR010248 Histidine utilization repressor NIY04_00375 IPR028978 Chorismate pyruvate-lyase/UbiC transcription regulator-associated domain superfamily NIY04_00380 IPR010282 Uncharacterised protein family HutD/Ves NIY04_00380 IPR011051 RmlC-like cupin domain superfamily NIY04_00380 IPR014710 RmlC-like jelly roll fold NIY04_00385 IPR035401 Urocanase, C-terminal domain NIY04_00385 IPR036190 Urocanase superfamily NIY04_00385 IPR035085 Urocanase, Rossmann-like domain NIY04_00385 IPR035400 Urocanase, N-terminal domain NIY04_00385 IPR023636 Urocanase conserved site NIY04_00385 IPR023637 Urocanase NIY04_00385 IPR038364 Urocanase, central domain superfamily NIY04_00390 IPR001106 Aromatic amino acid lyase NIY04_00390 IPR005921 Histidine ammonia-lyase NIY04_00390 IPR008948 L-Aspartase-like NIY04_00390 IPR022313 Phenylalanine/histidine ammonia-lyases, active site NIY04_00390 IPR024083 Fumarase/histidase, N-terminal NIY04_00395 IPR004840 Amino acid permease, conserved site NIY04_00395 IPR004841 Amino acid permease/ SLC12A domain NIY04_00400 IPR005920 Imidazolonepropionase NIY04_00400 IPR006680 Amidohydrolase-related NIY04_00400 IPR032466 Metal-dependent hydrolase NIY04_00400 IPR011059 Metal-dependent hydrolase, composite domain superfamily NIY04_00405 IPR020855 Ureohydrolase, manganese-binding site NIY04_00405 IPR023696 Ureohydrolase domain superfamily NIY04_00405 IPR006035 Ureohydrolase NIY04_00405 IPR005923 Formiminoglutamase NIY04_00420 IPR004391 Glutamate racemase NIY04_00420 IPR033134 Asp/Glu racemase, active site 2 NIY04_00420 IPR018187 Asp/Glu racemase, active site 1 NIY04_00420 IPR001920 Asp/Glu racemase NIY04_00420 IPR015942 Asp/Glu/hydantoin racemase NIY04_00425 IPR001123 Amino acid exporter protein, LeuE-type NIY04_00440 IPR035466 GlmS/AgaS, SIS domain 1 NIY04_00440 IPR035490 GlmS/FrlB, SIS domain 2 NIY04_00440 IPR017932 Glutamine amidotransferase type 2 domain NIY04_00440 IPR029055 Nucleophile aminohydrolases, N-terminal NIY04_00440 IPR001347 Sugar isomerase (SIS) NIY04_00440 IPR005855 Glucosamine-fructose-6-phosphate aminotransferase, isomerising NIY04_00445 IPR005882 Bifunctional UDP-N-acetylglucosamine pyrophosphorylase/glucosamine-1-phosphate N-acetyltransferase NIY04_00445 IPR038009 GlmU, C-terminal LbH domain NIY04_00445 IPR001451 Hexapeptide repeat NIY04_00445 IPR018357 Hexapeptide transferase, conserved site NIY04_00445 IPR025877 MobA-like NTP transferase NIY04_00445 IPR029044 Nucleotide-diphospho-sugar transferases NIY04_00445 IPR011004 Trimeric LpxA-like superfamily NIY04_00450 IPR026037 Phosphatidylglycerophosphatase A NIY04_00450 IPR007686 YutG/PgpA domain NIY04_00450 IPR036681 PgpA-like superfamily NIY04_00455 IPR010918 PurM-like, C-terminal domain NIY04_00455 IPR006283 Thiamine-monophosphate kinase NIY04_00455 IPR016188 PurM-like, N-terminal domain NIY04_00455 IPR036676 PurM-like, C-terminal domain superfamily NIY04_00455 IPR036921 PurM-like, N-terminal domain superfamily NIY04_00460 IPR035926 NusB-like superfamily NIY04_00460 IPR011605 NusB antitermination factor NIY04_00460 IPR006027 NusB/RsmB/TIM44 NIY04_00465 IPR034964 Lumazine synthase NIY04_00465 IPR036467 Lumazine/riboflavin synthase superfamily NIY04_00465 IPR002180 Lumazine/riboflavin synthase NIY04_00470 IPR017945 DHBP synthase RibB-like alpha/beta domain superfamily NIY04_00470 IPR000422 3,4-dihydroxy-2-butanone 4-phosphate synthase, RibB NIY04_00470 IPR032677 GTP cyclohydrolase II NIY04_00470 IPR036144 RibA-like superfamily NIY04_00480 IPR036412 HAD-like superfamily NIY04_00480 IPR023214 HAD superfamily NIY04_00480 IPR023190 Phosphoserine phosphatase, domain 2 NIY04_00480 IPR002912 ACT domain NIY04_00495 IPR023509 D-aminoacyl-tRNA deacylase-like superfamily NIY04_00495 IPR003732 D-aminoacyl-tRNA deacylase DTD NIY04_00500 IPR018028 Catalase, mono-functional, haem-containing NIY04_00500 IPR024708 Catalase active site NIY04_00500 IPR024711 Catalase, mono-functional, haem-containing, clades 1 and 3 NIY04_00500 IPR011614 Catalase core domain NIY04_00500 IPR002226 Catalase haem-binding site NIY04_00500 IPR010582 Catalase immune-responsive domain NIY04_00500 IPR020835 Catalase superfamily NIY04_00500 IPR037060 Catalase core domain superfamily NIY04_00510 IPR040727 Nicotinate phosphoribosyltransferase, N-terminal domain NIY04_00510 IPR041525 Nicotinate/nicotinamide phosphoribosyltransferase NIY04_00510 IPR006406 Nicotinate phosphoribosyltransferase NIY04_00510 IPR007229 Nicotinate phosphoribosyltransferase family NIY04_00510 IPR036068 Nicotinate phosphoribosyltransferase-like, C-terminal NIY04_00515 IPR001763 Rhodanese-like domain NIY04_00515 IPR036873 Rhodanese-like domain superfamily NIY04_00515 IPR001307 Thiosulphate sulfurtransferase, conserved site NIY04_00520 IPR003817 Phosphatidylserine decarboxylase-related NIY04_00520 IPR033177 Phosphatidylserine decarboxylase NIY04_00520 IPR033178 Phosphatidylserine decarboxylase, prokaryotic type 1 NIY04_00530 IPR036890 Histidine kinase/HSP90-like ATPase superfamily NIY04_00530 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily NIY04_00530 IPR000014 PAS domain NIY04_00530 IPR035965 PAS domain superfamily NIY04_00530 IPR013767 PAS fold NIY04_00530 IPR021766 Phosphate regulon sensor protein PhoR NIY04_00530 IPR004358 Signal transduction histidine kinase-related protein, C-terminal NIY04_00530 IPR014310 Signal transduction histidine kinase, phosphate regulon sensor PhoR NIY04_00530 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain NIY04_00530 IPR003594 Histidine kinase/HSP90-like ATPase NIY04_00530 IPR005467 Histidine kinase domain NIY04_00535 IPR011879 Signal transduction response regulator, phosphate regulon transcriptional regulatory protein PhoB NIY04_00535 IPR039420 Transcriptional regulatory protein WalR-like NIY04_00535 IPR001789 Signal transduction response regulator, receiver domain NIY04_00535 IPR016032 Signal transduction response regulator, C-terminal effector NIY04_00535 IPR011006 CheY-like superfamily NIY04_00535 IPR001867 OmpR/PhoB-type DNA-binding domain NIY04_00535 IPR036388 Winged helix-like DNA-binding domain superfamily NIY04_00545 IPR036291 NAD(P)-binding domain superfamily NIY04_00545 IPR002347 Short-chain dehydrogenase/reductase SDR NIY04_00545 IPR020904 Short-chain dehydrogenase/reductase, conserved site NIY04_00550 IPR002528 Multi antimicrobial extrusion protein NIY04_00555 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 NIY04_00555 IPR015424 Pyridoxal phosphate-dependent transferase NIY04_00555 IPR004839 Aminotransferase, class I/classII NIY04_00555 IPR015421 Pyridoxal phosphate-dependent transferase, major domain NIY04_00560 IPR007383 Protein of unknown function DUF445 NIY04_00575 IPR014746 Glutamine synthetase/guanido kinase, catalytic domain NIY04_00575 IPR007370 Glutamate--cysteine ligase NIY04_00575 IPR006334 Glutamate--cysteine ligase, monofunctional NIY04_00580 IPR003752 Disulphide bond formation protein DsbB/BdbC NIY04_00580 IPR022920 Disulphide bond formation protein DsbB NIY04_00580 IPR023380 DsbB-like superfamily NIY04_00585 IPR037026 Vgr protein, OB-fold domain superfamily NIY04_00585 IPR006533 Type VI secretion system, RhsGE-associated Vgr protein NIY04_00585 IPR017847 Type VI secretion system, RhsGE-associated Vgr family subset NIY04_00585 IPR006531 Gp5 N-terminal NIY04_00585 IPR018769 Domain of unknown function DUF2345, Vgr C-terminal NIY04_00585 IPR028244 Putative type VI secretion system, Rhs element associated Vgr domain NIY04_00590 IPR002901 Mannosyl-glycoprotein endo-beta-N-acetylglucosamidase-like domain NIY04_00590 IPR018392 LysM domain NIY04_00590 IPR036779 LysM domain superfamily NIY04_00625 IPR029058 Alpha/Beta hydrolase fold NIY04_00625 IPR008886 Uncharacterised protein family UPF0227/Esterase YqiA NIY04_00630 IPR001241 DNA topoisomerase, type IIA NIY04_00630 IPR003594 Histidine kinase/HSP90-like ATPase NIY04_00630 IPR002288 DNA gyrase B subunit, C-terminal NIY04_00630 IPR013759 DNA topoisomerase, type IIA, subunit B, C-terminal NIY04_00630 IPR013760 DNA topoisomerase, type IIA-like domain superfamily NIY04_00630 IPR036890 Histidine kinase/HSP90-like ATPase superfamily NIY04_00630 IPR013506 DNA topoisomerase, type IIA, subunit B, domain 2 NIY04_00630 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup NIY04_00630 IPR005737 DNA topoisomerase IV, subunit B, Gram-negative NIY04_00630 IPR020568 Ribosomal protein S5 domain 2-type fold NIY04_00630 IPR018522 DNA topoisomerase, type IIA, conserved site NIY04_00630 IPR006171 TOPRIM domain NIY04_00635 IPR023525 Ureidoglycolate lyase, bacterial NIY04_00635 IPR024060 Ureidoglycolate lyase domain superfamily NIY04_00635 IPR007247 Ureidoglycolate lyase NIY04_00635 IPR011051 RmlC-like cupin domain superfamily NIY04_00640 IPR005164 Allantoicase NIY04_00640 IPR015908 Allantoicase domain NIY04_00640 IPR008979 Galactose-binding-like domain superfamily NIY04_00645 IPR002938 FAD-binding domain NIY04_00645 IPR036188 FAD/NAD(P)-binding domain superfamily NIY04_00655 IPR006042 Xanthine/uracil permease NIY04_00655 IPR017588 Uric acid permease UacT-like NIY04_00655 IPR006043 Xanthine/uracil/vitamin C permease NIY04_00660 IPR014306 Hydroxyisourate hydrolase NIY04_00660 IPR023416 Transthyretin/hydroxyisourate hydrolase domain NIY04_00660 IPR036817 Transthyretin/hydroxyisourate hydrolase domain superfamily NIY04_00660 IPR023419 Transthyretin, conserved site NIY04_00660 IPR023418 Transthyretin, thyroxine binding site NIY04_00690 IPR013766 Thioredoxin domain NIY04_00690 IPR017937 Thioredoxin, conserved site NIY04_00690 IPR003834 Cytochrome C biogenesis protein, transmembrane domain NIY04_00690 IPR035671 DsbD gamma NIY04_00690 IPR028250 Thiol:disulfide interchange protein DsbD, N-terminal domain NIY04_00690 IPR036929 Thiol:disulfide interchange protein DsbD, N-terminal domain superfamily NIY04_00690 IPR022910 Thiol:disulphide interchange protein DsbD NIY04_00690 IPR036249 Thioredoxin-like superfamily NIY04_00695 IPR011620 Signal transduction histidine kinase, 5TM receptor LytS, transmembrane region NIY04_00695 IPR000160 GGDEF domain NIY04_00695 IPR029787 Nucleotide cyclase NIY04_00700 IPR029058 Alpha/Beta hydrolase fold NIY04_00700 IPR002168 Lipase, GDXG, putative histidine active site NIY04_00700 IPR033140 Lipase, GDXG, putative serine active site NIY04_00700 IPR013094 Alpha/beta hydrolase fold-3 NIY04_00710 IPR006660 Arsenate reductase-like NIY04_00710 IPR036249 Thioredoxin-like superfamily NIY04_00710 IPR006504 Transcriptional regulator Spx/MgsR NIY04_00715 IPR004808 AP endonuclease 1 NIY04_00715 IPR020847 AP endonuclease 1, binding site NIY04_00715 IPR020848 AP endonuclease 1, conserved site NIY04_00715 IPR036691 Endonuclease/exonuclease/phosphatase superfamily NIY04_00715 IPR005135 Endonuclease/exonuclease/phosphatase NIY04_00720 IPR004467 Orotate phosphoribosyl transferase domain NIY04_00720 IPR029057 Phosphoribosyltransferase-like NIY04_00720 IPR023031 Orotate phosphoribosyltransferase NIY04_00720 IPR000836 Phosphoribosyltransferase domain NIY04_00730 IPR012910 TonB-dependent receptor, plug domain NIY04_00730 IPR037066 TonB-dependent receptor, plug domain superfamily NIY04_00730 IPR039423 TonB-dependent receptor-like NIY04_00730 IPR000531 TonB-dependent receptor-like, beta-barrel NIY04_00730 IPR036942 TonB-dependent receptor-like, beta-barrel domain superfamily NIY04_00730 IPR010105 TonB-dependent siderophore receptor NIY04_00740 IPR004218 Prokaryotic glutathione synthetase, ATP-binding NIY04_00740 IPR016185 Pre-ATP-grasp domain superfamily NIY04_00740 IPR004215 Prokaryotic glutathione synthetase, N-terminal NIY04_00740 IPR006284 Glutathione synthetase, prokaryotic NIY04_00740 IPR013815 ATP-grasp fold, subdomain 1 NIY04_00740 IPR011761 ATP-grasp fold NIY04_00745 IPR004276 Glycosyltransferase family 28, N-terminal domain NIY04_00745 IPR006009 N-acetylglucosaminyltransferase, MurG NIY04_00745 IPR007235 Glycosyl transferase, family 28, C-terminal NIY04_00750 IPR036565 Mur-like, catalytic domain superfamily NIY04_00750 IPR004101 Mur ligase, C-terminal NIY04_00750 IPR036615 Mur ligase, C-terminal domain superfamily NIY04_00750 IPR000713 Mur ligase, N-terminal catalytic domain NIY04_00750 IPR013221 Mur ligase, central NIY04_00750 IPR005758 UDP-N-acetylmuramate--L-alanine ligase NIY04_00755 IPR016185 Pre-ATP-grasp domain superfamily NIY04_00755 IPR011127 D-alanine--D-alanine ligase, N-terminal domain NIY04_00755 IPR011095 D-alanine--D-alanine ligase, C-terminal NIY04_00755 IPR005905 D-alanine--D-alanine ligase NIY04_00755 IPR000291 D-alanine--D-alanine ligase/VANA/B/C, conserved site NIY04_00755 IPR013815 ATP-grasp fold, subdomain 1 NIY04_00755 IPR011761 ATP-grasp fold NIY04_00760 IPR013685 POTRA domain, FtsQ-type NIY04_00760 IPR005548 Cell division protein FtsQ/DivIB NIY04_00760 IPR026579 Cell division protein FtsQ NIY04_00760 IPR034746 POTRA domain NIY04_00765 IPR020823 Cell division protein FtsA NIY04_00765 IPR003494 SHS2 domain inserted in FtsA NIY04_00770 IPR000158 Cell division protein FtsZ NIY04_00770 IPR020805 Cell division protein FtsZ, conserved site NIY04_00770 IPR024757 Cell division protein FtsZ, C-terminal NIY04_00770 IPR008280 Tubulin/FtsZ, C-terminal NIY04_00770 IPR018316 Tubulin/FtsZ, 2-layer sandwich domain NIY04_00770 IPR036525 Tubulin/FtsZ, GTPase domain superfamily NIY04_00770 IPR003008 Tubulin/FtsZ, GTPase domain NIY04_00775 IPR015870 UDP-3-O-acyl N-acetylglucosamine deacetylase, N-terminal NIY04_00775 IPR004463 UDP-3-O-acyl N-acetylglucosamine deacetylase NIY04_00775 IPR011334 UDP-3-O-acyl N-acetylglucosamine deacetylase, C-terminal NIY04_00775 IPR020568 Ribosomal protein S5 domain 2-type fold NIY04_00785 IPR011055 Duplicated hybrid motif NIY04_00785 IPR016047 Peptidase M23 NIY04_00790 IPR005474 Transketolase, N-terminal NIY04_00790 IPR035807 Pyruvate dehydrogenase E1 component, N-terminal NIY04_00790 IPR041621 Pyruvate dehydrogenase E1 component, middle domain NIY04_00790 IPR029061 Thiamin diphosphate-binding fold NIY04_00790 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II NIY04_00790 IPR004660 Pyruvate dehydrogenase E1 component NIY04_00795 IPR001078 2-oxoacid dehydrogenase acyltransferase, catalytic domain NIY04_00795 IPR006256 Dihydrolipoamide acetyltransferase pyruvate dehydrogenase complex NIY04_00795 IPR000089 Biotin/lipoyl attachment NIY04_00795 IPR023213 Chloramphenicol acetyltransferase-like domain superfamily NIY04_00795 IPR036625 E3-binding domain superfamily NIY04_00795 IPR004167 Peripheral subunit-binding domain NIY04_00795 IPR011053 Single hybrid motif NIY04_00795 IPR003016 2-oxo acid dehydrogenase, lipoyl-binding site NIY04_00805 IPR001727 Gdt1 family NIY04_00810 IPR010105 TonB-dependent siderophore receptor NIY04_00810 IPR010917 TonB-dependent receptor, conserved site NIY04_00810 IPR036942 TonB-dependent receptor-like, beta-barrel domain superfamily NIY04_00810 IPR039423 TonB-dependent receptor-like NIY04_00810 IPR000531 TonB-dependent receptor-like, beta-barrel NIY04_00810 IPR037066 TonB-dependent receptor, plug domain superfamily NIY04_00810 IPR010916 TonB box, conserved site NIY04_00810 IPR012910 TonB-dependent receptor, plug domain NIY04_00815 IPR002563 Flavin reductase like domain NIY04_00815 IPR001226 Flavodoxin, conserved site NIY04_00815 IPR029039 Flavoprotein-like superfamily NIY04_00815 IPR001279 Metallo-beta-lactamase NIY04_00815 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like NIY04_00815 IPR012349 FMN-binding split barrel NIY04_00815 IPR008254 Flavodoxin/nitric oxide synthase NIY04_00820 IPR005358 Putative zinc- or iron-chelating domain containing protein NIY04_00825 IPR013785 Aldolase-type TIM barrel NIY04_00825 IPR005990 Inosine-5'-monophosphate dehydrogenase NIY04_00825 IPR015875 IMP dehydrogenase / GMP reductase, conserved site NIY04_00825 IPR001093 IMP dehydrogenase/GMP reductase NIY04_00825 IPR000644 CBS domain NIY04_00830 IPR005844 Alpha-D-phosphohexomutase, alpha/beta/alpha domain I NIY04_00830 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III NIY04_00830 IPR005845 Alpha-D-phosphohexomutase, alpha/beta/alpha domain II NIY04_00830 IPR005846 Alpha-D-phosphohexomutase, alpha/beta/alpha domain III NIY04_00830 IPR005843 Alpha-D-phosphohexomutase, C-terminal NIY04_00830 IPR036900 Alpha-D-phosphohexomutase, C-terminal domain superfamily NIY04_00830 IPR016066 Alpha-D-phosphohexomutase, conserved site NIY04_00830 IPR005841 Alpha-D-phosphohexomutase superfamily NIY04_00830 IPR006352 Phosphoglucosamine mutase, bacterial type NIY04_00835 IPR000659 Pyridoxamine 5'-phosphate oxidase NIY04_00835 IPR019576 Pyridoxine 5'-phosphate oxidase, dimerisation, C-terminal NIY04_00835 IPR012349 FMN-binding split barrel NIY04_00835 IPR011576 Pyridoxamine 5'-phosphate oxidase, putative NIY04_00835 IPR019740 Pyridoxamine 5'-phosphate oxidase, conserved site NIY04_00840 IPR001667 DDH domain NIY04_00840 IPR038763 DHH phosphoesterase superfamily NIY04_00840 IPR003156 DHHA1 domain NIY04_00840 IPR004610 Bacterial RecJ exonuclease NIY04_00840 IPR041122 RecJ, OB domain NIY04_00860 IPR013785 Aldolase-type TIM barrel NIY04_00860 IPR001155 NADH:flavin oxidoreductase/NADH oxidase, N-terminal NIY04_00865 IPR007507 3-deoxy-D-manno-octulosonic-acid transferase, N-terminal NIY04_00865 IPR038107 3-deoxy-D-manno-octulosonic-acid transferase, N-terminal domain superfamily NIY04_00865 IPR039901 3-deoxy-D-manno-octulosonic acid transferase NIY04_00875 IPR011014 Mechanosensitive ion channel MscS, transmembrane-2 NIY04_00875 IPR011066 Mechanosensitive ion channel MscS, C-terminal NIY04_00875 IPR006686 Mechanosensitive ion channel MscS, conserved site NIY04_00875 IPR006685 Mechanosensitive ion channel MscS NIY04_00875 IPR023408 Mechanosensitive ion channel MscS domain superfamily NIY04_00875 IPR010920 LSM domain superfamily NIY04_00885 IPR011904 Acetate-CoA ligase NIY04_00885 IPR032387 Acetyl-coenzyme A synthetase, N-terminal domain NIY04_00885 IPR025110 AMP-binding enzyme, C-terminal domain NIY04_00885 IPR020845 AMP-binding, conserved site NIY04_00885 IPR000873 AMP-dependent synthetase/ligase NIY04_00885 IPR042099 AMP-dependent synthetase-like superfamily NIY04_00890 IPR000868 Isochorismatase-like NIY04_00890 IPR036380 Isochorismatase-like superfamily NIY04_00895 IPR019887 Transcription regulator AsnC/Lrp, ligand binding domain NIY04_00895 IPR019888 Transcription regulator AsnC-type NIY04_00895 IPR011008 Dimeric alpha-beta barrel NIY04_00895 IPR000485 AsnC-type HTH domain NIY04_00895 IPR036388 Winged helix-like DNA-binding domain superfamily NIY04_00895 IPR036390 Winged helix DNA-binding domain superfamily NIY04_00900 IPR024014 FMNH(2)-dependent dimethylsulfone monooxygenase SfnG NIY04_00900 IPR011251 Luciferase-like domain NIY04_00900 IPR036661 Luciferase-like domain superfamily NIY04_00905 IPR019912 FMN reductase, MsuE-like NIY04_00905 IPR029039 Flavoprotein-like superfamily NIY04_00905 IPR005025 NADPH-dependent FMN reductase-like NIY04_00910 IPR001789 Signal transduction response regulator, receiver domain NIY04_00910 IPR016032 Signal transduction response regulator, C-terminal effector NIY04_00910 IPR011006 CheY-like superfamily NIY04_00910 IPR000792 Transcription regulator LuxR, C-terminal NIY04_00920 IPR036641 HPT domain superfamily NIY04_00920 IPR011006 CheY-like superfamily NIY04_00920 IPR037952 Sensor histidine kinase TorS, sensor domain NIY04_00920 IPR004358 Signal transduction histidine kinase-related protein, C-terminal NIY04_00920 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain NIY04_00920 IPR001789 Signal transduction response regulator, receiver domain NIY04_00920 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain NIY04_00920 IPR005467 Histidine kinase domain NIY04_00920 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily NIY04_00920 IPR038188 TorS, sensor domain superfamily NIY04_00920 IPR036890 Histidine kinase/HSP90-like ATPase superfamily NIY04_00920 IPR003594 Histidine kinase/HSP90-like ATPase NIY04_00920 IPR003660 HAMP domain NIY04_00925 IPR007436 Protein of unknown function DUF485 NIY04_00930 IPR001734 Sodium/solute symporter NIY04_00930 IPR018212 Sodium/solute symporter, conserved site NIY04_00930 IPR038377 Sodium/glucose symporter superfamily NIY04_00930 IPR014083 Cation/acetate symporter ActP NIY04_00940 IPR000060 BCCT transporter family NIY04_00940 IPR018093 BCCT transporter, conserved site NIY04_00950 IPR029787 Nucleotide cyclase NIY04_00950 IPR000160 GGDEF domain NIY04_00955 IPR041102 UvrA, interaction domain NIY04_00955 IPR041552 UvrA DNA-binding domain NIY04_00955 IPR004602 UvrABC system subunit A NIY04_00955 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIY04_00955 IPR017871 ABC transporter, conserved site NIY04_00955 IPR003439 ABC transporter-like NIY04_00960 IPR011075 Tetracyclin repressor-like, C-terminal domain NIY04_00960 IPR001647 DNA-binding HTH domain, TetR-type NIY04_00960 IPR009057 Homeobox-like domain superfamily NIY04_00960 IPR036271 Tetracyclin repressor-like, C-terminal domain superfamily NIY04_00965 IPR013149 Alcohol dehydrogenase, C-terminal NIY04_00965 IPR013154 Alcohol dehydrogenase, N-terminal NIY04_00965 IPR011032 GroES-like superfamily NIY04_00965 IPR002364 Quinone oxidoreductase/zeta-crystallin, conserved site NIY04_00965 IPR020843 Polyketide synthase, enoylreductase domain NIY04_00965 IPR036291 NAD(P)-binding domain superfamily NIY04_00975 IPR009707 Membrane protein GlpM/YdgC NIY04_00980 IPR022998 Thiamine phosphate synthase/TenI NIY04_00980 IPR013749 Pyridoxamine kinase/Phosphomethylpyrimidine kinase NIY04_00980 IPR004399 Hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase NIY04_00980 IPR016084 Haem oxygenase-like, multi-helical NIY04_00980 IPR013785 Aldolase-type TIM barrel NIY04_00980 IPR036206 Thiamin phosphate synthase superfamily NIY04_00980 IPR029056 Ribokinase-like NIY04_00980 IPR034291 Thiamine phosphate synthase NIY04_00980 IPR004305 Thiaminase-2/PQQC NIY04_00990 IPR036259 MFS transporter superfamily NIY04_00990 IPR020846 Major facilitator superfamily domain NIY04_00990 IPR011701 Major facilitator superfamily NIY04_00995 IPR011344 Single-stranded DNA-binding protein NIY04_00995 IPR000424 Primosome PriB/single-strand DNA-binding NIY04_00995 IPR012340 Nucleic acid-binding, OB-fold NIY04_01005 IPR011606 Branched-chain amino acid transport, permease NIY04_01005 IPR004471 Branched-chain amino acid transport, AzlC NIY04_01015 IPR004840 Amino acid permease, conserved site NIY04_01015 IPR004841 Amino acid permease/ SLC12A domain NIY04_01015 IPR011265 GABA permease NIY04_01020 IPR000524 Transcription regulator HTH, GntR NIY04_01020 IPR004839 Aminotransferase, class I/classII NIY04_01020 IPR015424 Pyridoxal phosphate-dependent transferase NIY04_01020 IPR015421 Pyridoxal phosphate-dependent transferase, major domain NIY04_01020 IPR036388 Winged helix-like DNA-binding domain superfamily NIY04_01020 IPR036390 Winged helix DNA-binding domain superfamily NIY04_01025 IPR015424 Pyridoxal phosphate-dependent transferase NIY04_01025 IPR004632 4-aminobutyrate aminotransferase, bacterial NIY04_01025 IPR005814 Aminotransferase class-III NIY04_01025 IPR015421 Pyridoxal phosphate-dependent transferase, major domain NIY04_01025 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 NIY04_01030 IPR016160 Aldehyde dehydrogenase, cysteine active site NIY04_01030 IPR016161 Aldehyde/histidinol dehydrogenase NIY04_01030 IPR016163 Aldehyde dehydrogenase, C-terminal NIY04_01030 IPR010102 Succinate semialdehyde dehydrogenase NIY04_01030 IPR015590 Aldehyde dehydrogenase domain NIY04_01030 IPR016162 Aldehyde dehydrogenase, N-terminal NIY04_01030 IPR029510 Aldehyde dehydrogenase, glutamic acid active site NIY04_01035 IPR036390 Winged helix DNA-binding domain superfamily NIY04_01035 IPR036388 Winged helix-like DNA-binding domain superfamily NIY04_01035 IPR000847 Transcription regulator HTH, LysR NIY04_01040 IPR036380 Isochorismatase-like superfamily NIY04_01040 IPR000868 Isochorismatase-like NIY04_01045 IPR012093 Pirin NIY04_01045 IPR008778 Pirin, C-terminal domain NIY04_01045 IPR003829 Pirin, N-terminal domain NIY04_01045 IPR014710 RmlC-like jelly roll fold NIY04_01045 IPR011051 RmlC-like cupin domain superfamily NIY04_01050 IPR002937 Amine oxidase NIY04_01050 IPR014105 Carotenoid/retinoid oxidoreductase NIY04_01050 IPR036188 FAD/NAD(P)-binding domain superfamily NIY04_01080 IPR005829 Sugar transporter, conserved site NIY04_01080 IPR011701 Major facilitator superfamily NIY04_01080 IPR020846 Major facilitator superfamily domain NIY04_01080 IPR036259 MFS transporter superfamily NIY04_01085 IPR005119 LysR, substrate-binding NIY04_01085 IPR000847 Transcription regulator HTH, LysR NIY04_01085 IPR036388 Winged helix-like DNA-binding domain superfamily NIY04_01085 IPR036390 Winged helix DNA-binding domain superfamily NIY04_01110 IPR020449 Transcription regulator HTH, AraC- type NIY04_01110 IPR003313 AraC-type arabinose-binding/dimerisation domain NIY04_01110 IPR009057 Homeobox-like domain superfamily NIY04_01110 IPR037923 Transcription regulator HTH-like NIY04_01110 IPR018060 DNA binding HTH domain, AraC-type NIY04_01110 IPR018062 HTH domain AraC-type, conserved site NIY04_01110 IPR014710 RmlC-like jelly roll fold NIY04_01110 IPR023699 Transcription activator HTH, RhaR NIY04_01130 IPR002577 Helix-turn-helix, HxlR type NIY04_01130 IPR036388 Winged helix-like DNA-binding domain superfamily NIY04_01130 IPR036390 Winged helix DNA-binding domain superfamily NIY04_01160 IPR036390 Winged helix DNA-binding domain superfamily NIY04_01160 IPR011991 ArsR-like helix-turn-helix domain NIY04_01160 IPR002577 Helix-turn-helix, HxlR type NIY04_01160 IPR036388 Winged helix-like DNA-binding domain superfamily NIY04_01165 IPR003680 Flavodoxin-like fold NIY04_01165 IPR029039 Flavoprotein-like superfamily NIY04_01185 IPR026041 Glyoxalase ElbB NIY04_01185 IPR029062 Class I glutamine amidotransferase-like NIY04_01190 IPR009057 Homeobox-like domain superfamily NIY04_01190 IPR018060 DNA binding HTH domain, AraC-type NIY04_01200 IPR003855 Potassium transporter NIY04_01200 IPR023051 Potassium uptake protein, low affinity, Kup NIY04_01225 IPR023271 Aquaporin-like NIY04_01225 IPR034294 Aquaporin transporter NIY04_01225 IPR023743 Aquaporin Z NIY04_01225 IPR000425 Major intrinsic protein NIY04_01225 IPR022357 Major intrinsic protein, conserved site NIY04_01240 IPR013785 Aldolase-type TIM barrel NIY04_01240 IPR004651 Histidine biosynthesis, HisF NIY04_01240 IPR011060 Ribulose-phosphate binding barrel NIY04_01240 IPR006062 Histidine biosynthesis NIY04_01245 IPR002575 Aminoglycoside phosphotransferase NIY04_01245 IPR005280 Homoserine kinase, type II NIY04_01245 IPR011009 Protein kinase-like domain superfamily NIY04_01260 IPR007138 Antibiotic biosynthesis monooxygenase domain NIY04_01260 IPR011008 Dimeric alpha-beta barrel NIY04_01275 IPR011060 Ribulose-phosphate binding barrel NIY04_01275 IPR023016 Phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase NIY04_01275 IPR013785 Aldolase-type TIM barrel NIY04_01275 IPR006062 Histidine biosynthesis NIY04_01275 IPR006063 Phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase HisA NIY04_01290 IPR029062 Class I glutamine amidotransferase-like NIY04_01290 IPR017926 Glutamine amidotransferase NIY04_01290 IPR010139 Imidazole glycerol phosphate synthase, subunit H NIY04_01295 IPR020565 Imidazoleglycerol-phosphate dehydratase, conserved site NIY04_01295 IPR000807 Imidazoleglycerol-phosphate dehydratase NIY04_01295 IPR038494 Imidazole glycerol phosphate dehydratase domain superfamily NIY04_01295 IPR020568 Ribosomal protein S5 domain 2-type fold NIY04_01315 IPR017255 Acetyltransferase, GNAT, predicted NIY04_01315 IPR023072 Acetyltransferase, YpeA NIY04_01315 IPR000182 GNAT domain NIY04_01315 IPR016181 Acyl-CoA N-acyltransferase NIY04_01320 IPR026888 Acetyl-CoA hydrolase/transferase C-terminal domain NIY04_01320 IPR037171 NagB/RpiA transferase-like NIY04_01320 IPR017821 Succinate CoA transferase NIY04_01320 IPR003702 Acetyl-CoA hydrolase/transferase NIY04_01320 IPR038460 Acetyl-CoA hydrolase/transferase, C-terminal domain superfamily NIY04_01330 IPR004358 Signal transduction histidine kinase-related protein, C-terminal NIY04_01330 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily NIY04_01330 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain NIY04_01330 IPR005467 Histidine kinase domain NIY04_01330 IPR003594 Histidine kinase/HSP90-like ATPase NIY04_01330 IPR003660 HAMP domain NIY04_01330 IPR036890 Histidine kinase/HSP90-like ATPase superfamily NIY04_01335 IPR011006 CheY-like superfamily NIY04_01335 IPR001867 OmpR/PhoB-type DNA-binding domain NIY04_01335 IPR016032 Signal transduction response regulator, C-terminal effector NIY04_01335 IPR001789 Signal transduction response regulator, receiver domain NIY04_01335 IPR039420 Transcriptional regulatory protein WalR-like NIY04_01335 IPR036388 Winged helix-like DNA-binding domain superfamily NIY04_01340 IPR003029 S1 domain NIY04_01340 IPR023323 Tex-like domain superfamily NIY04_01340 IPR041692 HHH domain 9 NIY04_01340 IPR012340 Nucleic acid-binding, OB-fold NIY04_01340 IPR012337 Ribonuclease H-like superfamily NIY04_01340 IPR023319 Tex-like protein, HTH domain superfamily NIY04_01340 IPR022967 RNA-binding domain, S1 NIY04_01340 IPR018974 Tex-like protein, N-terminal NIY04_01340 IPR037027 YqgF/RNase H-like domain superfamily NIY04_01340 IPR010994 RuvA domain 2-like NIY04_01340 IPR032639 Tex protein, YqgF-like domain NIY04_01340 IPR006641 YqgF/RNase H-like domain NIY04_01345 IPR011547 SLC26A/SulP transporter domain NIY04_01345 IPR001902 SLC26A/SulP transporter NIY04_01345 IPR002645 STAS domain NIY04_01345 IPR036513 STAS domain superfamily NIY04_01350 IPR002347 Short-chain dehydrogenase/reductase SDR NIY04_01350 IPR020904 Short-chain dehydrogenase/reductase, conserved site NIY04_01350 IPR036291 NAD(P)-binding domain superfamily NIY04_01365 IPR002818 DJ-1/PfpI NIY04_01365 IPR029062 Class I glutamine amidotransferase-like NIY04_01370 IPR015424 Pyridoxal phosphate-dependent transferase NIY04_01370 IPR000277 Cys/Met metabolism, pyridoxal phosphate-dependent enzyme NIY04_01370 IPR006235 O-acetylhomoserine/O-acetylserine sulfhydrylase NIY04_01370 IPR015421 Pyridoxal phosphate-dependent transferase, major domain NIY04_01370 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 NIY04_01375 IPR017871 ABC transporter, conserved site NIY04_01375 IPR022374 Energy-dependent translational throttle protein EttA NIY04_01375 IPR003439 ABC transporter-like NIY04_01375 IPR032781 ABC-transporter extension domain NIY04_01375 IPR003593 AAA+ ATPase domain NIY04_01375 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIY04_01400 IPR005695 Cobalt/zinc/cadmium resistance protein CzcB NIY04_01400 IPR032317 RND efflux pump, membrane fusion protein, barrel-sandwich domain NIY04_01400 IPR006143 RND efflux pump, membrane fusion protein NIY04_01405 IPR004763 Cation efflux system CzcA/CusA/SilA/NccA/HelA/CnrA NIY04_01405 IPR001036 Acriflavin resistance protein NIY04_01405 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains NIY04_01410 IPR027469 Cation efflux transmembrane domain superfamily NIY04_01410 IPR036837 Cation efflux protein, cytoplasmic domain superfamily NIY04_01410 IPR002524 Cation efflux protein NIY04_01440 IPR004841 Amino acid permease/ SLC12A domain NIY04_01440 IPR004840 Amino acid permease, conserved site NIY04_01455 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold NIY04_01455 IPR020751 Aminoacyl-tRNA synthetase, class I, anticodon-binding domain, subdomain 2 NIY04_01455 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site NIY04_01455 IPR004527 Glutamate-tRNA ligase, bacterial/mitochondrial NIY04_01455 IPR000924 Glutamyl/glutaminyl-tRNA synthetase NIY04_01455 IPR008925 Aminoacyl-tRNA synthetase, class I, anticodon-binding NIY04_01455 IPR033910 Glutamyl-tRNA synthetase NIY04_01455 IPR020058 Glutamyl/glutaminyl-tRNA synthetase, class Ib, catalytic domain NIY04_01465 IPR000957 Sulphate/thiosulphate-binding, conserved site NIY04_01465 IPR034408 Sulphate/thiosulphate-binding site NIY04_01465 IPR005669 Thiosulphate/Sulfate-binding protein NIY04_01470 IPR023397 S-adenosyl-L-methionine-dependent methyltransferase, MraW, recognition domain superfamily NIY04_01470 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase NIY04_01470 IPR002903 Ribosomal RNA small subunit methyltransferase H NIY04_01480 IPR012338 Beta-lactamase/transpeptidase-like NIY04_01480 IPR037532 Peptidoglycan D,D-transpeptidase FtsI NIY04_01480 IPR005311 Penicillin-binding protein, dimerisation domain NIY04_01480 IPR036138 Penicillin-binding protein, dimerisation domain superfamily NIY04_01480 IPR001460 Penicillin-binding protein, transpeptidase NIY04_01485 IPR036615 Mur ligase, C-terminal domain superfamily NIY04_01485 IPR005761 UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase NIY04_01485 IPR013221 Mur ligase, central NIY04_01485 IPR035911 MurE/MurF, N-terminal NIY04_01485 IPR000713 Mur ligase, N-terminal catalytic domain NIY04_01485 IPR036565 Mur-like, catalytic domain superfamily NIY04_01485 IPR004101 Mur ligase, C-terminal NIY04_01490 IPR000713 Mur ligase, N-terminal catalytic domain NIY04_01490 IPR013221 Mur ligase, central NIY04_01490 IPR036615 Mur ligase, C-terminal domain superfamily NIY04_01490 IPR004101 Mur ligase, C-terminal NIY04_01490 IPR036565 Mur-like, catalytic domain superfamily NIY04_01490 IPR035911 MurE/MurF, N-terminal NIY04_01490 IPR005863 UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase NIY04_01495 IPR003524 Phospho-N-acetylmuramoyl-pentapeptide transferase NIY04_01495 IPR018480 Phospho-N-acetylmuramoyl-pentapeptide transferase, conserved site NIY04_01495 IPR000715 Glycosyl transferase, family 4 NIY04_01505 IPR016718 rRNA (guanine-N1-)-methyltransferase A, predicted NIY04_01505 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase NIY04_01505 IPR025714 Methyltransferase domain NIY04_01510 IPR012338 Beta-lactamase/transpeptidase-like NIY04_01510 IPR001264 Glycosyl transferase, family 51 NIY04_01510 IPR023346 Lysozyme-like domain superfamily NIY04_01510 IPR036950 Penicillin binding protein transglycosylase domain NIY04_01510 IPR031376 Penicillin-binding protein, OB-like domain NIY04_01510 IPR001460 Penicillin-binding protein, transpeptidase NIY04_01515 IPR005883 Type IV pilus assembly protein PilM NIY04_01515 IPR003494 SHS2 domain inserted in FtsA NIY04_01520 IPR007813 Fimbrial assembly PilN NIY04_01525 IPR007445 Pilus assembly protein, PilO NIY04_01525 IPR014717 Translation elongation factor EF1B/ribosomal protein S6 NIY04_01535 IPR004846 Type II/III secretion system NIY04_01535 IPR004845 Type II secretion system GspD, conserved site NIY04_01535 IPR013355 Type IV pilus secretin PilQ NIY04_01535 IPR011662 Secretin/TonB, short N-terminal domain NIY04_01535 IPR005644 NolW-like NIY04_01535 IPR038591 NolW-like superfamily NIY04_01535 IPR021731 AMIN domain NIY04_01535 IPR001775 GspD/PilQ family NIY04_01540 IPR031322 Shikimate kinase/gluconokinase NIY04_01540 IPR000623 Shikimate kinase/Threonine synthase-like 1 NIY04_01540 IPR023000 Shikimate kinase, conserved site NIY04_01540 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIY04_01545 IPR016037 3-dehydroquinate synthase AroB NIY04_01545 IPR030963 3-dehydroquinate synthase family NIY04_01545 IPR030960 3-dehydroquinate synthase domain NIY04_01555 IPR017932 Glutamine amidotransferase type 2 domain NIY04_01555 IPR002489 Glutamate synthase, alpha subunit, C-terminal NIY04_01555 IPR036485 Glutamate synthase, alpha subunit, C-terminal domain superfamily NIY04_01555 IPR006982 Glutamate synthase, central-N NIY04_01555 IPR002932 Glutamate synthase domain NIY04_01555 IPR029055 Nucleophile aminohydrolases, N-terminal NIY04_01555 IPR013785 Aldolase-type TIM barrel NIY04_01560 IPR009051 Alpha-helical ferredoxin NIY04_01560 IPR023753 FAD/NAD(P)-binding domain NIY04_01560 IPR036188 FAD/NAD(P)-binding domain superfamily NIY04_01560 IPR028261 Dihydroprymidine dehydrogenase domain II NIY04_01560 IPR006006 Glutamate synthase, NADH/NADPH, small subunit 2 NIY04_01570 IPR023353 LemA-like domain superfamily NIY04_01570 IPR007156 LemA NIY04_01575 IPR007621 TPM domain NIY04_01585 IPR000983 Bacterial general secretion pathway protein G-type pilin NIY04_01585 IPR012902 Prokaryotic N-terminal methylation site NIY04_01585 IPR001082 Fimbrial protein pilin NIY04_01590 IPR007016 O-antigen ligase-related NIY04_01590 IPR031726 Protein glycosylation ligase domain NIY04_01590 IPR021797 Virulence factor membrane-bound polymerase, C-terminal NIY04_01595 IPR002024 Bacterioferritin NIY04_01595 IPR012347 Ferritin-like NIY04_01595 IPR009040 Ferritin-like diiron domain NIY04_01595 IPR009078 Ferritin-like superfamily NIY04_01595 IPR008331 Ferritin/DPS protein domain NIY04_01600 IPR007419 BFD-like [2Fe-2S]-binding domain NIY04_01600 IPR041854 BFD-like [2Fe-2S]-binding domain superfamily NIY04_01605 IPR006175 YjgF/YER057c/UK114 family NIY04_01605 IPR006056 RidA family NIY04_01605 IPR019897 RidA, conserved site NIY04_01605 IPR035959 RutC-like superfamily NIY04_01610 IPR002912 ACT domain NIY04_01610 IPR003607 HD/PDEase domain NIY04_01610 IPR004811 RelA/SpoT family NIY04_01610 IPR007685 RelA/SpoT NIY04_01610 IPR004095 TGS NIY04_01610 IPR012676 TGS-like NIY04_01610 IPR033655 RelA, TGS domain NIY04_01610 IPR012675 Beta-grasp domain superfamily NIY04_01620 IPR003716 DNA-directed RNA polymerase, omega subunit NIY04_01620 IPR006110 RNA polymerase, subunit omega/K/RPB6 NIY04_01620 IPR012293 RNA polymerase subunit, RPB6/omega NIY04_01620 IPR036161 RPB6/omega subunit-like superfamily NIY04_01625 IPR008144 Guanylate kinase-like domain NIY04_01625 IPR008145 Guanylate kinase/L-type calcium channel beta subunit NIY04_01625 IPR017665 Guanylate kinase NIY04_01625 IPR020590 Guanylate kinase, conserved site NIY04_01625 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIY04_01630 IPR003451 4-hydroxy-3-methylbut-2-enyl diphosphate reductase NIY04_01670 IPR000307 Ribosomal protein S16 NIY04_01670 IPR020592 Ribosomal protein S16, conserved site NIY04_01670 IPR023803 Ribosomal protein S16 domain superfamily NIY04_01675 IPR036976 RimM, N-terminal domain superfamily NIY04_01675 IPR002676 RimM, N-terminal NIY04_01675 IPR009000 Translation protein, beta-barrel domain superfamily NIY04_01675 IPR027275 PRC-barrel domain NIY04_01675 IPR011961 16S rRNA processing protein RimM NIY04_01675 IPR011033 PRC-barrel-like superfamily NIY04_01680 IPR016009 tRNA methyltransferase TRMD/TRM10-type domain NIY04_01680 IPR029028 Alpha/beta knot methyltransferases NIY04_01680 IPR002649 tRNA (guanine-N1-)-methyltransferase, bacteria NIY04_01680 IPR023148 tRNA (guanine-N1-)-methyltransferase, C-terminal NIY04_01680 IPR029026 tRNA (guanine-N1-)-methyltransferase, N-terminal NIY04_01685 IPR008991 Translation protein SH3-like domain superfamily NIY04_01685 IPR018257 Ribosomal protein L19, conserved site NIY04_01685 IPR038657 Ribosomal protein L19 superfamily NIY04_01685 IPR001857 Ribosomal protein L19 NIY04_01690 IPR029058 Alpha/Beta hydrolase fold NIY04_01690 IPR000073 Alpha/beta hydrolase fold-1 NIY04_01695 IPR004961 Lipase chaperone NIY04_01700 IPR015240 tRNA pseudouridine synthase II, TruB, subfamily 1, C-terminal NIY04_01700 IPR032819 tRNA pseudouridylate synthase B, C-terminal NIY04_01700 IPR014780 tRNA pseudouridine synthase II, TruB NIY04_01700 IPR002501 Pseudouridine synthase II, N-terminal NIY04_01700 IPR020103 Pseudouridine synthase, catalytic domain superfamily NIY04_01700 IPR015947 PUA-like superfamily NIY04_01705 IPR002781 Transmembrane protein TauE-like NIY04_01715 IPR000620 EamA domain NIY04_01720 IPR000620 EamA domain NIY04_01725 IPR029753 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain conserved site NIY04_01725 IPR006139 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain NIY04_01725 IPR002912 ACT domain NIY04_01725 IPR006140 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain NIY04_01725 IPR029752 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain conserved site 1 NIY04_01725 IPR036291 NAD(P)-binding domain superfamily NIY04_01730 IPR016164 FAD-linked oxidase-like, C-terminal NIY04_01730 IPR016171 Vanillyl-alcohol oxidase, C-terminal subdomain 2 NIY04_01730 IPR006094 FAD linked oxidase, N-terminal NIY04_01730 IPR004490 Glycolate oxidase subunit GlcD NIY04_01730 IPR004113 FAD-linked oxidase, C-terminal NIY04_01730 IPR036318 FAD-binding, type PCMH-like superfamily NIY04_01730 IPR016166 FAD-binding domain, PCMH-type NIY04_01740 IPR011008 Dimeric alpha-beta barrel NIY04_01740 IPR007138 Antibiotic biosynthesis monooxygenase domain NIY04_01745 IPR029039 Flavoprotein-like superfamily NIY04_01745 IPR003680 Flavodoxin-like fold NIY04_01755 IPR020846 Major facilitator superfamily domain NIY04_01755 IPR036259 MFS transporter superfamily NIY04_01755 IPR005829 Sugar transporter, conserved site NIY04_01755 IPR011701 Major facilitator superfamily NIY04_01760 IPR032692 Integral membrane protein YccS, N-terminal NIY04_01760 IPR010020 Integral membrane protein, YccS/YhfK NIY04_01760 IPR010019 Integral membrane protein, YccS NIY04_01765 IPR018152 Superoxide dismutase, copper/zinc, binding site NIY04_01765 IPR001424 Superoxide dismutase, copper/zinc binding domain NIY04_01765 IPR036423 Superoxide dismutase-like, copper/zinc binding domain superfamily NIY04_01765 IPR024134 Superoxide dismutase (Cu/Zn) / superoxide dismutase copper chaperone NIY04_01770 IPR002549 Transmembrane protein TqsA-like NIY04_01775 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIY04_01775 IPR025669 AAA domain NIY04_01795 IPR013216 Methyltransferase type 11 NIY04_01795 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase NIY04_01805 IPR004840 Amino acid permease, conserved site NIY04_01805 IPR004841 Amino acid permease/ SLC12A domain NIY04_01810 IPR006095 Glutamate/phenylalanine/leucine/valine dehydrogenase NIY04_01810 IPR033524 Leu/Phe/Val dehydrogenases active site NIY04_01810 IPR006096 Glutamate/phenylalanine/leucine/valine dehydrogenase, C-terminal NIY04_01810 IPR006097 Glutamate/phenylalanine/leucine/valine dehydrogenase, dimerisation domain NIY04_01810 IPR014362 Glutamate dehydrogenase NIY04_01810 IPR036291 NAD(P)-binding domain superfamily NIY04_01810 IPR033922 NAD(P) binding domain of glutamate dehydrogenase NIY04_01815 IPR026330 Succinylornithine transaminase NIY04_01815 IPR015421 Pyridoxal phosphate-dependent transferase, major domain NIY04_01815 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 NIY04_01815 IPR015424 Pyridoxal phosphate-dependent transferase NIY04_01815 IPR005814 Aminotransferase class-III NIY04_01815 IPR004636 Acetylornithine/Succinylornithine transaminase family NIY04_01815 IPR017652 Acetyl/Succinylornithine transaminase family, bacteria NIY04_01820 IPR007041 Arginine N-succinyltransferase AstA/AruG NIY04_01820 IPR016181 Acyl-CoA N-acyltransferase NIY04_01820 IPR017650 Arginine N-succinyltransferase NIY04_01825 IPR015590 Aldehyde dehydrogenase domain NIY04_01825 IPR016163 Aldehyde dehydrogenase, C-terminal NIY04_01825 IPR016160 Aldehyde dehydrogenase, cysteine active site NIY04_01825 IPR029510 Aldehyde dehydrogenase, glutamic acid active site NIY04_01825 IPR016162 Aldehyde dehydrogenase, N-terminal NIY04_01825 IPR017649 Succinylglutamate-semialdehyde dehydrogenase NIY04_01825 IPR016161 Aldehyde/histidinol dehydrogenase NIY04_01830 IPR037031 Succinylarginine dihydrolase superfamily NIY04_01830 IPR007079 Succinylarginine dihydrolase NIY04_01835 IPR007036 Succinylglutamate desuccinylase/aspartoacylase NIY04_01835 IPR016681 Succinylglutamate desuccinylase NIY04_01850 IPR034202 Subtilisin Carlsberg-like catalytic domain NIY04_01850 IPR037045 Peptidase S8 propeptide/proteinase inhibitor I9 superfamily NIY04_01850 IPR010259 Peptidase S8 propeptide/proteinase inhibitor I9 NIY04_01850 IPR015500 Peptidase S8, subtilisin-related NIY04_01850 IPR023828 Peptidase S8, subtilisin, Ser-active site NIY04_01850 IPR023827 Peptidase S8, subtilisin, Asp-active site NIY04_01850 IPR036852 Peptidase S8/S53 domain superfamily NIY04_01850 IPR000209 Peptidase S8/S53 domain NIY04_01850 IPR022398 Peptidase S8, subtilisin, His-active site NIY04_01865 IPR036390 Winged helix DNA-binding domain superfamily NIY04_01865 IPR005119 LysR, substrate-binding NIY04_01865 IPR000847 Transcription regulator HTH, LysR NIY04_01865 IPR036388 Winged helix-like DNA-binding domain superfamily NIY04_01870 IPR000620 EamA domain NIY04_01890 IPR006194 Glycine-tRNA synthetase, heterodimeric NIY04_01890 IPR008909 DALR anticodon binding NIY04_01890 IPR015944 Glycine-tRNA ligase, beta subunit NIY04_01895 IPR006194 Glycine-tRNA synthetase, heterodimeric NIY04_01895 IPR002310 Glycine-tRNA ligase, alpha subunit NIY04_01900 IPR036259 MFS transporter superfamily NIY04_01900 IPR011701 Major facilitator superfamily NIY04_01900 IPR020846 Major facilitator superfamily domain NIY04_01900 IPR004734 Multidrug resistance protein NIY04_01900 IPR005829 Sugar transporter, conserved site NIY04_01900 IPR001958 Tetracycline resistance protein TetA/multidrug resistance protein MdtG NIY04_01915 IPR000644 CBS domain NIY04_01920 IPR007168 Phage shock protein, PspC, N-terminal NIY04_01930 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily NIY04_01930 IPR037069 Acyl-CoA dehydrogenase/oxidase, N-terminal domain superfamily NIY04_01930 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal NIY04_01930 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal NIY04_01930 IPR006091 Acyl-CoA oxidase/dehydrogenase, central domain NIY04_01930 IPR025878 Acetyl-CoA dehydrogenase-like C-terminal domain NIY04_01930 IPR036250 Acyl-CoA dehydrogenase-like, C-terminal NIY04_01940 IPR011342 Shikimate dehydrogenase NIY04_01940 IPR006151 Quinate/shikimate 5-dehydrogenase/glutamyl-tRNA reductase NIY04_01940 IPR022893 Shikimate dehydrogenase family NIY04_01940 IPR036291 NAD(P)-binding domain superfamily NIY04_01940 IPR041121 SDH, C-terminal NIY04_01940 IPR013708 Shikimate dehydrogenase substrate binding, N-terminal NIY04_01945 IPR018375 Coproporphyrinogen III oxidase, conserved site NIY04_01945 IPR001260 Coproporphyrinogen III oxidase, aerobic NIY04_01945 IPR036406 Oxygen-dependent coproporphyrinogen III oxidase superfamily NIY04_01950 IPR032677 GTP cyclohydrolase II NIY04_01950 IPR000926 GTP cyclohydrolase II, RibA NIY04_01950 IPR036144 RibA-like superfamily NIY04_01955 IPR005477 Deoxyxylulose-5-phosphate synthase NIY04_01955 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II NIY04_01955 IPR029061 Thiamin diphosphate-binding fold NIY04_01955 IPR005475 Transketolase-like, pyrimidine-binding domain NIY04_01955 IPR020826 Transketolase binding site NIY04_01955 IPR033248 Transketolase, C-terminal domain NIY04_01960 IPR022337 Inositol monophosphatase, SuhB NIY04_01960 IPR020550 Inositol monophosphatase, conserved site NIY04_01960 IPR000760 Inositol monophosphatase-like NIY04_01960 IPR033942 Inositol monophosphatase NIY04_01960 IPR020583 Inositol monophosphatase, metal-binding site NIY04_01965 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIY04_01965 IPR001650 Helicase, C-terminal NIY04_01965 IPR014014 RNA helicase, DEAD-box type, Q motif NIY04_01965 IPR021046 Cold-shock protein, DEAD box A, C-terminal NIY04_01965 IPR034415 CsdA, RNA recognition motif NIY04_01965 IPR005580 DEAD box helicase DbpA/CsdA, RNA-binding domain NIY04_01965 IPR011545 DEAD/DEAH box helicase domain NIY04_01965 IPR028618 ATP-dependent RNA helicase DeaD NIY04_01965 IPR014001 Helicase superfamily 1/2, ATP-binding domain NIY04_01965 IPR000629 ATP-dependent RNA helicase DEAD-box, conserved site NIY04_01965 IPR012677 Nucleotide-binding alpha-beta plait domain superfamily NIY04_01975 IPR003593 AAA+ ATPase domain NIY04_01975 IPR003439 ABC transporter-like NIY04_01975 IPR017871 ABC transporter, conserved site NIY04_01975 IPR030296 Probable ABC transporter ATP-binding protein MlaF/Mkl NIY04_01975 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIY04_01980 IPR003453 ABC transport permease subunit MlaE, Proteobacteria NIY04_01980 IPR030802 ABC transporter permease MalE NIY04_01990 IPR008869 Toluene tolerance Ttg2/phospholipid-binding protein MlaC NIY04_01990 IPR042245 Tgt2/MlaC superfamily NIY04_02000 IPR002523 Mg2+ transporter protein, CorA-like/Zinc transport protein ZntB NIY04_02000 IPR004488 Magnesium/cobalt transport protein CorA NIY04_02005 IPR005269 Cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG NIY04_02005 IPR031100 LOG family NIY04_02010 IPR000086 NUDIX hydrolase domain NIY04_02010 IPR020476 NUDIX hydrolase NIY04_02010 IPR015797 NUDIX hydrolase-like domain superfamily NIY04_02010 IPR020084 NUDIX hydrolase, conserved site NIY04_02015 IPR000836 Phosphoribosyltransferase domain NIY04_02015 IPR005222 Competence protein ComF NIY04_02015 IPR029057 Phosphoribosyltransferase-like NIY04_02020 IPR004609 ATP-dependent DNA helicase RecG NIY04_02020 IPR011545 DEAD/DEAH box helicase domain NIY04_02020 IPR014001 Helicase superfamily 1/2, ATP-binding domain NIY04_02020 IPR001650 Helicase, C-terminal NIY04_02020 IPR012340 Nucleic acid-binding, OB-fold NIY04_02020 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIY04_02020 IPR033454 RecG, wedge domain NIY04_02030 IPR038404 TRAP transporter solute receptor DctP superfamily NIY04_02035 IPR002123 Phospholipid/glycerol acyltransferase NIY04_02035 IPR028354 Glycerol-3-phosphate acyltransferase, PlsB NIY04_02035 IPR041728 GPAT/DHAPAT, acyltransferase domain NIY04_02035 IPR022284 Glycerol-3-phosphate O-acyltransferase/Dihydroxyacetone phosphate acyltransferase NIY04_02040 IPR003703 Acyl-CoA thioesterase NIY04_02040 IPR029069 HotDog domain superfamily NIY04_02045 IPR033380 Glutamate-aspartate symport protein GltP/GltT NIY04_02045 IPR018107 Sodium:dicarboxylate symporter, conserved site NIY04_02045 IPR036458 Sodium:dicarboxylate symporter superfamily NIY04_02045 IPR034703 Proton/glutamate-aspartate symporter GltP NIY04_02045 IPR001991 Sodium:dicarboxylate symporter NIY04_02055 IPR030393 EngB-type guanine nucleotide-binding (G) domain NIY04_02055 IPR019987 GTP-binding protein, ribosome biogenesis, YsxC NIY04_02055 IPR006073 GTP binding domain NIY04_02055 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIY04_02060 IPR030489 Transcription regulator Rrf2-type, conserved site NIY04_02060 IPR000944 Transcription regulator Rrf2-type NIY04_02060 IPR023761 Transcriptional repressor HTH, NsrR NIY04_02060 IPR036388 Winged helix-like DNA-binding domain superfamily NIY04_02060 IPR036390 Winged helix DNA-binding domain superfamily NIY04_02065 IPR017938 Riboflavin synthase-like beta-barrel NIY04_02065 IPR001433 Oxidoreductase FAD/NAD(P)-binding NIY04_02065 IPR023950 Flavohemoprotein NIY04_02065 IPR012292 Globin/Protoglobin NIY04_02065 IPR009050 Globin-like superfamily NIY04_02065 IPR000971 Globin NIY04_02065 IPR039261 Ferredoxin-NADP reductase (FNR), nucleotide-binding domain NIY04_02065 IPR017927 FAD-binding domain, ferredoxin reductase-type NIY04_02065 IPR008333 Flavoprotein pyridine nucleotide cytochrome reductase-like, FAD-binding domain NIY04_02075 IPR033186 Helicase HerA-like C-terminal NIY04_02075 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIY04_02080 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 NIY04_02080 IPR015421 Pyridoxal phosphate-dependent transferase, major domain NIY04_02080 IPR006233 Cystathionine beta-lyase, bacterial NIY04_02080 IPR015424 Pyridoxal phosphate-dependent transferase NIY04_02080 IPR000277 Cys/Met metabolism, pyridoxal phosphate-dependent enzyme NIY04_02085 IPR029062 Class I glutamine amidotransferase-like NIY04_02085 IPR017926 Glutamine amidotransferase NIY04_02090 IPR018268 Ribosomal protein S10, conserved site NIY04_02090 IPR036838 Ribosomal protein S10 domain superfamily NIY04_02090 IPR027486 Ribosomal protein S10 domain NIY04_02090 IPR001848 Ribosomal protein S10 NIY04_02095 IPR009000 Translation protein, beta-barrel domain superfamily NIY04_02095 IPR019926 Ribosomal protein L3, conserved site NIY04_02095 IPR000597 Ribosomal protein L3 NIY04_02095 IPR019927 Ribosomal protein L3, bacterial/organelle-type NIY04_02100 IPR002136 Ribosomal protein L4/L1e NIY04_02100 IPR023574 Ribosomal protein L4 domain superfamily NIY04_02100 IPR013005 50S ribosomal protein uL4 NIY04_02105 IPR012677 Nucleotide-binding alpha-beta plait domain superfamily NIY04_02105 IPR012678 Ribosomal protein L23/L15e core domain superfamily NIY04_02105 IPR013025 Ribosomal protein L25/L23 NIY04_02110 IPR012340 Nucleic acid-binding, OB-fold NIY04_02110 IPR022666 Ribosomal Proteins L2, RNA binding domain NIY04_02110 IPR014722 Ribosomal protein L2, domain 2 NIY04_02110 IPR002171 Ribosomal protein L2 NIY04_02110 IPR005880 Ribosomal protein L2, bacterial/organellar-type NIY04_02110 IPR022669 Ribosomal protein L2, C-terminal NIY04_02110 IPR008991 Translation protein SH3-like domain superfamily NIY04_02110 IPR014726 Ribosomal protein L2, domain 3 NIY04_02115 IPR005732 Ribosomal protein S19, bacterial-type NIY04_02115 IPR020934 Ribosomal protein S19 conserved site NIY04_02115 IPR023575 Ribosomal protein S19, superfamily NIY04_02115 IPR002222 Ribosomal protein S19/S15 NIY04_02120 IPR001063 Ribosomal protein L22/L17 NIY04_02120 IPR018260 Ribosomal protein L22/L17, conserved site NIY04_02120 IPR005727 Ribosomal protein L22, bacterial/chloroplast-type NIY04_02120 IPR036394 Ribosomal protein L22/L17 superfamily NIY04_02130 IPR036920 Ribosomal protein L10e/L16 superfamily NIY04_02130 IPR000114 Ribosomal protein L16 NIY04_02130 IPR016180 Ribosomal protein L10e/L16 NIY04_02130 IPR020798 Ribosomal protein L16, conserved site NIY04_02135 IPR001854 Ribosomal protein L29/L35 NIY04_02135 IPR036049 Ribosomal protein L29/L35 superfamily NIY04_02140 IPR019979 Ribosomal protein S17, conserved site NIY04_02140 IPR019984 30S ribosomal protein S17 NIY04_02140 IPR000266 Ribosomal protein S17/S11 NIY04_02140 IPR012340 Nucleic acid-binding, OB-fold NIY04_02145 IPR036853 Ribosomal protein L14 superfamily NIY04_02145 IPR000218 Ribosomal protein L14P NIY04_02145 IPR005745 Ribosomal protein L14P, bacterial-type NIY04_02145 IPR019972 Ribosomal protein L14P, conserved site NIY04_02150 IPR008991 Translation protein SH3-like domain superfamily NIY04_02150 IPR005825 Ribosomal protein L24/L26, conserved site NIY04_02150 IPR003256 Ribosomal protein L24 NIY04_02150 IPR014722 Ribosomal protein L2, domain 2 NIY04_02150 IPR041988 Ribosomal Protein L26/L24, KOW domain NIY04_02150 IPR005824 KOW NIY04_02155 IPR002132 Ribosomal protein L5 NIY04_02155 IPR020930 Ribosomal protein L5, bacterial-type NIY04_02155 IPR031309 Ribosomal protein L5, C-terminal NIY04_02155 IPR020929 Ribosomal protein L5, conserved site NIY04_02155 IPR022803 Ribosomal protein L5 domain superfamily NIY04_02155 IPR031310 Ribosomal protein L5, N-terminal NIY04_02160 IPR018271 Ribosomal protein S14, conserved site NIY04_02160 IPR023036 Ribosomal protein S14, bacterial/plastid NIY04_02160 IPR001209 Ribosomal protein S14 NIY04_02165 IPR000630 Ribosomal protein S8 NIY04_02165 IPR035987 Ribosomal protein S8 superfamily NIY04_02170 IPR000702 Ribosomal protein L6 NIY04_02170 IPR020040 Ribosomal protein L6, alpha-beta domain NIY04_02170 IPR036789 Ribosomal protein L6, alpha-beta domain superfamily NIY04_02170 IPR019906 Ribosomal protein L6, bacterial-type NIY04_02170 IPR002358 Ribosomal protein L6, conserved site NIY04_02175 IPR005484 Ribosomal protein L18 NIY04_02175 IPR004389 Ribosomal protein L18, bacterial-type NIY04_02180 IPR018192 Ribosomal protein S5, N-terminal, conserved site NIY04_02180 IPR013810 Ribosomal protein S5, N-terminal NIY04_02180 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup NIY04_02180 IPR020568 Ribosomal protein S5 domain 2-type fold NIY04_02180 IPR000851 Ribosomal protein S5 NIY04_02180 IPR005712 Ribosomal protein S5, bacterial-type NIY04_02180 IPR005324 Ribosomal protein S5, C-terminal NIY04_02185 IPR036919 Ribosomal protein L30, ferredoxin-like fold domain superfamily NIY04_02185 IPR016082 Ribosomal protein L30, ferredoxin-like fold domain NIY04_02185 IPR005996 Ribosomal protein L30, bacterial-type NIY04_02190 IPR001196 Ribosomal protein L15, conserved site NIY04_02190 IPR021131 Ribosomal protein L18e/L15P NIY04_02190 IPR030878 Ribosomal protein L15 NIY04_02190 IPR005749 Ribosomal protein L15, bacterial-type NIY04_02190 IPR036227 Ribosomal L18e/L15P superfamily NIY04_02195 IPR023201 SecY domain superfamily NIY04_02195 IPR030659 SecY conserved site NIY04_02195 IPR002208 SecY/SEC61-alpha family NIY04_02195 IPR026593 Protein translocase subunit SecY NIY04_02200 IPR035977 Ribosomal protein L36 superfamily NIY04_02200 IPR000473 Ribosomal protein L36 NIY04_02205 IPR018269 Ribosomal protein S13, conserved site NIY04_02205 IPR027437 30s ribosomal protein S13, C-terminal NIY04_02205 IPR019980 Ribosomal protein S13, bacterial-type NIY04_02205 IPR010979 Ribosomal protein S13-like, H2TH NIY04_02205 IPR001892 Ribosomal protein S13 NIY04_02210 IPR001971 Ribosomal protein S11 NIY04_02210 IPR019981 Ribosomal protein S11, bacterial-type NIY04_02210 IPR036967 Ribosomal protein S11 superfamily NIY04_02210 IPR018102 Ribosomal S11, conserved site NIY04_02215 IPR022801 Ribosomal protein S4/S9 NIY04_02215 IPR001912 Ribosomal protein S4/S9, N-terminal NIY04_02215 IPR005709 Ribosomal protein S4, bacterial-type NIY04_02215 IPR018079 Ribosomal protein S4, conserved site NIY04_02215 IPR002942 RNA-binding S4 domain NIY04_02215 IPR036986 RNA-binding S4 domain superfamily NIY04_02220 IPR036603 RNA polymerase, RBP11-like subunit NIY04_02220 IPR036643 DNA-directed RNA polymerase, insert domain superfamily NIY04_02220 IPR011260 RNA polymerase, alpha subunit, C-terminal NIY04_02220 IPR011773 DNA-directed RNA polymerase, alpha subunit NIY04_02220 IPR011263 DNA-directed RNA polymerase, RpoA/D/Rpb3-type NIY04_02220 IPR011262 DNA-directed RNA polymerase, insert domain NIY04_02225 IPR036373 Ribosomal protein L17 superfamily NIY04_02225 IPR000456 Ribosomal protein L17 NIY04_02230 IPR036188 FAD/NAD(P)-binding domain superfamily NIY04_02230 IPR020946 Flavin monooxygenase-like NIY04_02235 IPR006091 Acyl-CoA oxidase/dehydrogenase, central domain NIY04_02235 IPR036250 Acyl-CoA dehydrogenase-like, C-terminal NIY04_02235 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily NIY04_02235 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal NIY04_02235 IPR037069 Acyl-CoA dehydrogenase/oxidase, N-terminal domain superfamily NIY04_02235 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal NIY04_02235 IPR006089 Acyl-CoA dehydrogenase, conserved site NIY04_02240 IPR036714 Flavinator of succinate dehydrogenase superfamily NIY04_02240 IPR005631 Flavinator of succinate dehydrogenase NIY04_02270 IPR012658 Conserved hypothetical protein CHP02443 NIY04_02275 IPR001567 Peptidase M3A/M3B catalytic domain NIY04_02275 IPR024077 Neurolysin/Thimet oligopeptidase, domain 2 NIY04_02280 IPR022966 Ribonuclease II/R, conserved site NIY04_02280 IPR011805 Ribonuclease R NIY04_02280 IPR011129 Cold shock domain NIY04_02280 IPR013223 Ribonuclease B, N-terminal OB domain NIY04_02280 IPR001900 Ribonuclease II/R NIY04_02280 IPR004476 Ribonuclease II/ribonuclease R NIY04_02280 IPR013668 Ribonuclease R winged-helix domain NIY04_02280 IPR012340 Nucleic acid-binding, OB-fold NIY04_02280 IPR040476 RNase II/RNase R, cold shock domain NIY04_02280 IPR003029 S1 domain NIY04_02280 IPR022967 RNA-binding domain, S1 NIY04_02325 IPR011234 Fumarylacetoacetase-like, C-terminal NIY04_02325 IPR036663 Fumarylacetoacetase-like, C-terminal domain superfamily NIY04_02330 IPR008917 Transcription factor, Skn-1-like, DNA-binding domain superfamily NIY04_02330 IPR020449 Transcription regulator HTH, AraC- type NIY04_02330 IPR009057 Homeobox-like domain superfamily NIY04_02330 IPR018060 DNA binding HTH domain, AraC-type NIY04_02330 IPR018062 HTH domain AraC-type, conserved site NIY04_02330 IPR014710 RmlC-like jelly roll fold NIY04_02330 IPR011051 RmlC-like cupin domain superfamily NIY04_02335 IPR000620 EamA domain NIY04_02340 IPR023679 Uncharacterised protein family UPF0761, bacterial NIY04_02340 IPR017039 Virulence factor BrkB NIY04_02345 IPR008254 Flavodoxin/nitric oxide synthase NIY04_02345 IPR001226 Flavodoxin, conserved site NIY04_02345 IPR029039 Flavoprotein-like superfamily NIY04_02345 IPR010089 Flavoprotein WrbA-like NIY04_02345 IPR005025 NADPH-dependent FMN reductase-like NIY04_02350 IPR000836 Phosphoribosyltransferase domain NIY04_02350 IPR029057 Phosphoribosyltransferase-like NIY04_02350 IPR010079 Xanthine phosphoribosyltransferase NIY04_02370 IPR023091 Metalloprotease catalytic domain superfamily, predicted NIY04_02370 IPR002036 Endoribonuclease YbeY NIY04_02370 IPR020549 Endoribonuclease YbeY, conserved site NIY04_02375 IPR003714 PhoH-like protein NIY04_02375 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIY04_02380 IPR006638 Elp3/MiaB/NifB NIY04_02380 IPR005839 Methylthiotransferase NIY04_02380 IPR020612 Methylthiotransferase, conserved site NIY04_02380 IPR013848 Methylthiotransferase, N-terminal NIY04_02380 IPR038135 Methylthiotransferase, N-terminal domain superfamily NIY04_02380 IPR006463 tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase MiaB NIY04_02380 IPR007197 Radical SAM NIY04_02380 IPR023404 Radical SAM, alpha/beta horseshoe NIY04_02380 IPR002792 TRAM domain NIY04_02385 IPR008258 Transglycosylase SLT domain 1 NIY04_02385 IPR000189 Prokaryotic transglycosylase, active site NIY04_02385 IPR010090 Phage tail tape measure protein NIY04_02385 IPR023346 Lysozyme-like domain superfamily NIY04_02385 IPR011055 Duplicated hybrid motif NIY04_02385 IPR016047 Peptidase M23 NIY04_02395 IPR001236 Lactate/malate dehydrogenase, N-terminal NIY04_02395 IPR015955 Lactate dehydrogenase/glycoside hydrolase, family 4, C-terminal NIY04_02395 IPR010945 Malate dehydrogenase, type 2 NIY04_02395 IPR036291 NAD(P)-binding domain superfamily NIY04_02395 IPR001557 L-lactate/malate dehydrogenase NIY04_02395 IPR022383 Lactate/malate dehydrogenase, C-terminal NIY04_02415 IPR002052 DNA methylase, N-6 adenine-specific, conserved site NIY04_02415 IPR007473 Ribosomal RNA large subunit methyltransferase J NIY04_02415 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase NIY04_02420 IPR004533 CDP-diacylglycerol--serine O-phosphatidyltransferase NIY04_02420 IPR000462 CDP-alcohol phosphatidyltransferase NIY04_02465 IPR037069 Acyl-CoA dehydrogenase/oxidase, N-terminal domain superfamily NIY04_02465 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal NIY04_02465 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily NIY04_02465 IPR036250 Acyl-CoA dehydrogenase-like, C-terminal NIY04_02465 IPR006089 Acyl-CoA dehydrogenase, conserved site NIY04_02465 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal NIY04_02465 IPR006091 Acyl-CoA oxidase/dehydrogenase, central domain NIY04_02470 IPR036271 Tetracyclin repressor-like, C-terminal domain superfamily NIY04_02470 IPR001647 DNA-binding HTH domain, TetR-type NIY04_02470 IPR009057 Homeobox-like domain superfamily NIY04_02470 IPR041490 HTH-type transcriptional repressor KstR2, C-terminal NIY04_02480 IPR036291 NAD(P)-binding domain superfamily NIY04_02480 IPR002347 Short-chain dehydrogenase/reductase SDR NIY04_02485 IPR034733 Acetyl-CoA carboxylase NIY04_02485 IPR029045 ClpP/crotonase-like domain superfamily NIY04_02485 IPR011762 Acetyl-coenzyme A carboxyltransferase, N-terminal NIY04_02485 IPR011763 Acetyl-coenzyme A carboxyltransferase, C-terminal NIY04_02490 IPR006089 Acyl-CoA dehydrogenase, conserved site NIY04_02490 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily NIY04_02490 IPR037069 Acyl-CoA dehydrogenase/oxidase, N-terminal domain superfamily NIY04_02490 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal NIY04_02490 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal NIY04_02490 IPR036250 Acyl-CoA dehydrogenase-like, C-terminal NIY04_02490 IPR006091 Acyl-CoA oxidase/dehydrogenase, central domain NIY04_02500 IPR011761 ATP-grasp fold NIY04_02500 IPR005481 Biotin carboxylase-like, N-terminal domain NIY04_02500 IPR011054 Rudiment single hybrid motif NIY04_02500 IPR001882 Biotin-binding site NIY04_02500 IPR011764 Biotin carboxylation domain NIY04_02500 IPR005482 Biotin carboxylase, C-terminal NIY04_02500 IPR000089 Biotin/lipoyl attachment NIY04_02500 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain NIY04_02500 IPR016185 Pre-ATP-grasp domain superfamily NIY04_02500 IPR011053 Single hybrid motif NIY04_02510 IPR007481 Stringent starvation protein B NIY04_02510 IPR036760 SspB-like superfamily NIY04_02515 IPR036282 Glutathione S-transferase, C-terminal domain superfamily NIY04_02515 IPR004045 Glutathione S-transferase, N-terminal NIY04_02515 IPR010987 Glutathione S-transferase, C-terminal-like NIY04_02515 IPR040079 Glutathione Transferase family NIY04_02515 IPR004046 Glutathione S-transferase, C-terminal NIY04_02515 IPR034341 Stringent starvation protein A, N-terminal NIY04_02515 IPR036249 Thioredoxin-like superfamily NIY04_02520 IPR000754 Ribosomal protein S9 NIY04_02520 IPR020568 Ribosomal protein S5 domain 2-type fold NIY04_02520 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup NIY04_02520 IPR023035 Ribosomal protein S9, bacterial/plastid NIY04_02520 IPR020574 Ribosomal protein S9, conserved site NIY04_02525 IPR005822 Ribosomal protein L13 NIY04_02525 IPR036899 Ribosomal protein L13 superfamily NIY04_02525 IPR005823 Ribosomal protein L13, bacterial-type NIY04_02530 IPR005255 PdxA family NIY04_02530 IPR037510 4-hydroxythreonine-4-phosphate dehydrogenase NIY04_02535 IPR020598 Ribosomal RNA adenine methylase transferase, N-terminal NIY04_02535 IPR020596 Ribosomal RNA adenine methylase transferase, conserved site NIY04_02535 IPR011530 Ribosomal RNA adenine dimethylase NIY04_02535 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase NIY04_02535 IPR023165 rRNA adenine dimethylase-like NIY04_02535 IPR001737 Ribosomal RNA adenine methyltransferase KsgA/Erm NIY04_02540 IPR004617 Bis(5'-nucleosyl)-tetraphosphatase (symmetrical) NIY04_02540 IPR004843 Calcineurin-like phosphoesterase domain, ApaH type NIY04_02540 IPR029052 Metallo-dependent phosphatase-like NIY04_02560 IPR035647 EF-G domain III/V-like NIY04_02560 IPR030394 HflX-type guanine nucleotide-binding (G) domain NIY04_02560 IPR032305 GTP-binding protein, middle domain NIY04_02560 IPR006073 GTP binding domain NIY04_02560 IPR016496 GTPase HflX NIY04_02560 IPR025121 GTPase HflX, N-terminal NIY04_02560 IPR042108 GTPase HflX, N-terminal domain superfamily NIY04_02560 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIY04_02570 IPR030871 Cardiolipin synthase C NIY04_02570 IPR001736 Phospholipase D/Transphosphatidylase NIY04_02570 IPR025202 Phospholipase D-like domain NIY04_02580 IPR011250 Outer membrane protein/outer membrane enzyme PagP, beta-barrel NIY04_02580 IPR000498 Outer membrane protein OmpA-like, transmembrane domain NIY04_02580 IPR036737 OmpA-like domain superfamily NIY04_02580 IPR006664 Outer membrane protein, bacterial NIY04_02580 IPR006665 OmpA-like domain NIY04_02580 IPR006690 Outer membrane protein, OmpA-like, conserved site NIY04_02580 IPR002368 Outer membrane protein, OmpA NIY04_02585 IPR033417 Periplasmic sensor domain CHASE8 NIY04_02585 IPR000160 GGDEF domain NIY04_02585 IPR003660 HAMP domain NIY04_02585 IPR029787 Nucleotide cyclase NIY04_02620 IPR036188 FAD/NAD(P)-binding domain superfamily NIY04_02620 IPR023753 FAD/NAD(P)-binding domain NIY04_02620 IPR001100 Pyridine nucleotide-disulphide oxidoreductase, class I NIY04_02620 IPR004099 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain NIY04_02620 IPR022962 Soluble pyridine nucleotide transhydrogenase NIY04_02620 IPR016156 FAD/NAD-linked reductase, dimerisation domain superfamily NIY04_02630 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like NIY04_02630 IPR005939 Beta-lactamase hydrolase-like NIY04_02630 IPR001279 Metallo-beta-lactamase NIY04_02630 IPR029021 Protein-tyrosine phosphatase-like NIY04_02635 IPR000073 Alpha/beta hydrolase fold-1 NIY04_02635 IPR029058 Alpha/Beta hydrolase fold NIY04_02640 IPR005746 Thioredoxin NIY04_02640 IPR013766 Thioredoxin domain NIY04_02640 IPR036249 Thioredoxin-like superfamily NIY04_02640 IPR017937 Thioredoxin, conserved site NIY04_02645 IPR040170 Cytosolic acyl coenzyme A thioester hydrolase NIY04_02645 IPR033120 Hotdog acyl-CoA thioesterase (ACOT)-type domain NIY04_02645 IPR029069 HotDog domain superfamily NIY04_02645 IPR006683 Thioesterase domain NIY04_02675 IPR023145 YfbU, helix-hairpin domain superfamily NIY04_02675 IPR005587 Uncharacterised protein family UPF0304, YfbU NIY04_02675 IPR023146 YfbU, alpha-helical bundle domain superfamily NIY04_02750 IPR007029 YHS domain NIY04_02750 IPR023299 P-type ATPase, cytoplasmic domain N NIY04_02750 IPR023298 P-type ATPase, transmembrane domain superfamily NIY04_02750 IPR008250 P-type ATPase, A domain superfamily NIY04_02750 IPR036412 HAD-like superfamily NIY04_02750 IPR027256 P-type ATPase, subfamily IB NIY04_02750 IPR001757 P-type ATPase NIY04_02750 IPR012348 Ribonucleotide reductase-like NIY04_02750 IPR011017 TRASH domain NIY04_02750 IPR018303 P-type ATPase, phosphorylation site NIY04_02750 IPR023214 HAD superfamily NIY04_02755 IPR005467 Histidine kinase domain NIY04_02755 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain NIY04_02755 IPR004358 Signal transduction histidine kinase-related protein, C-terminal NIY04_02755 IPR006290 Heavy metal sensor kinase NIY04_02755 IPR036890 Histidine kinase/HSP90-like ATPase superfamily NIY04_02755 IPR003594 Histidine kinase/HSP90-like ATPase NIY04_02755 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily NIY04_02755 IPR003660 HAMP domain NIY04_02760 IPR006291 Transcriptional regulatory protein PcoR, heavy metal response NIY04_02760 IPR001789 Signal transduction response regulator, receiver domain NIY04_02760 IPR039420 Transcriptional regulatory protein WalR-like NIY04_02760 IPR036388 Winged helix-like DNA-binding domain superfamily NIY04_02760 IPR011006 CheY-like superfamily NIY04_02760 IPR001867 OmpR/PhoB-type DNA-binding domain NIY04_02770 IPR019546 Twin-arginine translocation pathway, signal sequence, bacterial/archaeal NIY04_02770 IPR006311 Twin-arginine translocation pathway, signal sequence NIY04_02770 IPR034279 Copper resistance protein, third cupredoxin domain NIY04_02770 IPR034282 Copper resistance protein CopA, second cupredoxin domain NIY04_02770 IPR034284 Copper resistance protein, first cupredoxin domain NIY04_02770 IPR033138 Multicopper oxidases, conserved site NIY04_02770 IPR002355 Multicopper oxidase, copper-binding site NIY04_02770 IPR011707 Multicopper oxidase, type 3 NIY04_02770 IPR011706 Multicopper oxidase, type 2 NIY04_02770 IPR001117 Multicopper oxidase, type 1 NIY04_02770 IPR008972 Cupredoxin NIY04_02770 IPR006376 Copper-resistance protein CopA NIY04_02790 IPR032317 RND efflux pump, membrane fusion protein, barrel-sandwich domain NIY04_02790 IPR006143 RND efflux pump, membrane fusion protein NIY04_02795 IPR001036 Acriflavin resistance protein NIY04_02795 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains NIY04_02795 IPR004763 Cation efflux system CzcA/CusA/SilA/NccA/HelA/CnrA NIY04_02805 IPR011640 Ferrous iron transport protein B, C-terminal NIY04_02805 IPR030389 FeoB-type guanine nucleotide-binding (G) domain NIY04_02805 IPR011642 Nucleoside transporter/FeoB GTPase, Gate domain NIY04_02805 IPR006073 GTP binding domain NIY04_02805 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIY04_02805 IPR003373 Ferrous iron transport protein B NIY04_02820 IPR000551 MerR-type HTH domain NIY04_02820 IPR009061 Putative DNA-binding domain superfamily NIY04_02820 IPR011794 Hg(II)-responsive transcriptional regulator NIY04_02845 IPR011010 DNA breaking-rejoining enzyme, catalytic core NIY04_02845 IPR002104 Integrase, catalytic domain NIY04_02845 IPR038488 Integrase, DNA-binding domain superfamily NIY04_02845 IPR025166 Integrase, DNA-binding domain NIY04_02845 IPR010998 Integrase/recombinase, N-terminal NIY04_02845 IPR013762 Integrase-like, catalytic domain superfamily NIY04_02850 IPR007551 Protein of unknown function DUF520 NIY04_02850 IPR035570 UPF0234, N-terminal NIY04_02850 IPR036183 YajQ-like superfamily NIY04_02850 IPR035571 UPF0234-like, C-terminal NIY04_02860 IPR036188 FAD/NAD(P)-binding domain superfamily NIY04_02860 IPR008471 MnmC-like methyltransferase NIY04_02860 IPR023032 tRNA 5-methylaminomethyl-2-thiouridine biosynthesis bifunctional protein MnmC NIY04_02860 IPR017610 tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal NIY04_02860 IPR006076 FAD dependent oxidoreductase NIY04_02870 IPR011008 Dimeric alpha-beta barrel NIY04_02870 IPR005545 YCII-related NIY04_02875 IPR006008 Intracellular septation protein A NIY04_02880 IPR004013 PHP domain NIY04_02880 IPR003141 Polymerase/histidinol phosphatase, N-terminal NIY04_02880 IPR016195 Polymerase/histidinol phosphatase-like NIY04_02885 IPR021134 Bestrophin/UPF0187 NIY04_02890 IPR025657 RadC-like JAB domain NIY04_02890 IPR010994 RuvA domain 2-like NIY04_02890 IPR001405 Uncharacterised protein family UPF0758 NIY04_02890 IPR037518 MPN domain NIY04_02895 IPR035929 CoaB-like superfamily NIY04_02895 IPR005252 Coenzyme A biosynthesis bifunctional protein CoaBC NIY04_02895 IPR007085 DNA/pantothenate metabolism flavoprotein, C-terminal NIY04_02895 IPR036551 Flavin prenyltransferase-like NIY04_02895 IPR003382 Flavoprotein NIY04_02900 IPR005665 Protein-export membrane protein SecF, bacterial NIY04_02900 IPR022645 Protein-export membrane protein SecD/SecF, bacterial NIY04_02900 IPR022646 Protein-export membrane protein SecD/SecF/SecDF, conserved site NIY04_02900 IPR022813 Protein-export membrane protein SecD/SecF, archaeal and bacterial NIY04_02905 IPR005791 Protein translocase subunit SecD NIY04_02905 IPR027398 SecD export protein N-terminal TM domain NIY04_02905 IPR022813 Protein-export membrane protein SecD/SecF, archaeal and bacterial NIY04_02905 IPR022645 Protein-export membrane protein SecD/SecF, bacterial NIY04_02905 IPR022646 Protein-export membrane protein SecD/SecF/SecDF, conserved site NIY04_02910 IPR003849 Preprotein translocase YajC NIY04_02915 IPR002616 tRNA-guanine(15) transglycosylase-like NIY04_02915 IPR004803 tRNA-guanine transglycosylase NIY04_02915 IPR036511 Queuine tRNA-ribosyltransferase-like NIY04_02930 IPR003699 S-adenosylmethionine:tRNA ribosyltransferase-isomerase, QueA NIY04_02930 IPR042118 QueA, domain 1 NIY04_02930 IPR042119 QueA, domain 2 NIY04_02930 IPR036100 S-adenosylmethionine:tRNA ribosyltransferase-isomerase, QueA superfamily NIY04_02940 IPR038488 Integrase, DNA-binding domain superfamily NIY04_02940 IPR025166 Integrase, DNA-binding domain NIY04_02940 IPR011010 DNA breaking-rejoining enzyme, catalytic core NIY04_02940 IPR002104 Integrase, catalytic domain NIY04_02940 IPR010998 Integrase/recombinase, N-terminal NIY04_02940 IPR013762 Integrase-like, catalytic domain superfamily NIY04_02950 IPR010982 Lambda repressor-like, DNA-binding domain superfamily NIY04_02950 IPR001387 Cro/C1-type helix-turn-helix domain NIY04_02960 IPR006359 Transcription elongation factor GreA NIY04_02960 IPR028624 Transcription elongation factor GreA/GreB NIY04_02960 IPR001437 Transcription elongation factor, GreA/GreB, C-terminal NIY04_02960 IPR023459 Transcription elongation factor GreA/GreB family NIY04_02960 IPR022691 Transcription elongation factor, GreA/GreB, N-terminal NIY04_02960 IPR036953 Transcription elongation factor GreA/GreB, C-terminal domain superfamily NIY04_02960 IPR036805 Transcription elongation factor, GreA/GreB, N-terminal domain superfamily NIY04_02975 IPR005467 Histidine kinase domain NIY04_02975 IPR003594 Histidine kinase/HSP90-like ATPase NIY04_02975 IPR036890 Histidine kinase/HSP90-like ATPase superfamily NIY04_02975 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain NIY04_02975 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily NIY04_02975 IPR011649 KaiB domain NIY04_02975 IPR004358 Signal transduction histidine kinase-related protein, C-terminal NIY04_02975 IPR036249 Thioredoxin-like superfamily NIY04_02975 IPR023527 Adaptive-response sensory-kinase SasA NIY04_02980 IPR023057 Bifunctional glutamine synthetase adenylyltransferase/adenylyl-removing enzyme NIY04_02980 IPR005190 Glutamate-ammonia ligase adenylyltransferase, repeated domain NIY04_02980 IPR013546 PII-uridylyltransferase/Glutamine-synthetase adenylyltransferase NIY04_02985 IPR036038 Aminotransferase-like, PLP-dependent enzymes NIY04_02985 IPR018300 Aminotransferase, class IV, conserved site NIY04_02985 IPR005785 Branched-chain amino acid aminotransferase I NIY04_02985 IPR033939 Branched-chain aminotransferase NIY04_02985 IPR001544 Aminotransferase class IV NIY04_03000 IPR011330 Glycoside hydrolase/deacetylase, beta/alpha-barrel NIY04_03000 IPR002509 NodB homology domain NIY04_03005 IPR001173 Glycosyltransferase 2-like NIY04_03005 IPR029044 Nucleotide-diphospho-sugar transferases NIY04_03010 IPR001296 Glycosyl transferase, family 1 NIY04_03010 IPR028098 Glycosyltransferase subfamily 4-like, N-terminal domain NIY04_03025 IPR003331 UDP-N-acetylglucosamine 2-epimerase domain NIY04_03025 IPR032892 UDP-N-acetylglucosamine 2-epimerase WecB NIY04_03025 IPR029767 UDP-N-acetylglucosamine 2-epimerase WecB-like NIY04_03040 IPR004364 Aminoacyl-tRNA synthetase, class II (D/K/N) NIY04_03040 IPR006195 Aminoacyl-tRNA synthetase, class II NIY04_03040 IPR004365 OB-fold nucleic acid binding domain, AA-tRNA synthetase-type NIY04_03040 IPR012340 Nucleic acid-binding, OB-fold NIY04_03040 IPR029351 GAD domain NIY04_03040 IPR004115 GAD-like domain superfamily NIY04_03040 IPR002312 Aspartyl/Asparaginyl-tRNA synthetase, class IIb NIY04_03040 IPR004524 Aspartate-tRNA ligase, type 1 NIY04_03050 IPR039426 Vitamin B12 transporter BtuB-like NIY04_03050 IPR000531 TonB-dependent receptor-like, beta-barrel NIY04_03050 IPR037066 TonB-dependent receptor, plug domain superfamily NIY04_03050 IPR012910 TonB-dependent receptor, plug domain NIY04_03070 IPR020948 Phosphate-starvation-induced PsiE-like NIY04_03070 IPR009315 Phosphate-starvation-induced PsiE NIY04_03075 IPR025878 Acetyl-CoA dehydrogenase-like C-terminal domain NIY04_03075 IPR006091 Acyl-CoA oxidase/dehydrogenase, central domain NIY04_03075 IPR036250 Acyl-CoA dehydrogenase-like, C-terminal NIY04_03075 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal NIY04_03075 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal NIY04_03075 IPR037069 Acyl-CoA dehydrogenase/oxidase, N-terminal domain superfamily NIY04_03075 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily NIY04_03080 IPR006091 Acyl-CoA oxidase/dehydrogenase, central domain NIY04_03080 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily NIY04_03080 IPR037069 Acyl-CoA dehydrogenase/oxidase, N-terminal domain superfamily NIY04_03080 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal NIY04_03080 IPR025878 Acetyl-CoA dehydrogenase-like C-terminal domain NIY04_03080 IPR036250 Acyl-CoA dehydrogenase-like, C-terminal NIY04_03080 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal NIY04_03090 IPR036890 Histidine kinase/HSP90-like ATPase superfamily NIY04_03090 IPR005467 Histidine kinase domain NIY04_03090 IPR003594 Histidine kinase/HSP90-like ATPase NIY04_03090 IPR003660 HAMP domain NIY04_03090 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain NIY04_03090 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily NIY04_03090 IPR004358 Signal transduction histidine kinase-related protein, C-terminal NIY04_03095 IPR011006 CheY-like superfamily NIY04_03095 IPR001867 OmpR/PhoB-type DNA-binding domain NIY04_03095 IPR016032 Signal transduction response regulator, C-terminal effector NIY04_03095 IPR001789 Signal transduction response regulator, receiver domain NIY04_03095 IPR039420 Transcriptional regulatory protein WalR-like NIY04_03095 IPR036388 Winged helix-like DNA-binding domain superfamily NIY04_03100 IPR003846 Protein adenylyltransferase SelO NIY04_03120 IPR029499 ATP:cob(I)alamin adenosyltransferase, PduO-type NIY04_03120 IPR036451 Cobalamin adenosyltransferase-like superfamily NIY04_03120 IPR016030 Cobalamin adenosyltransferase-like NIY04_03125 IPR000531 TonB-dependent receptor-like, beta-barrel NIY04_03125 IPR037066 TonB-dependent receptor, plug domain superfamily NIY04_03125 IPR012910 TonB-dependent receptor, plug domain NIY04_03125 IPR010917 TonB-dependent receptor, conserved site NIY04_03125 IPR036942 TonB-dependent receptor-like, beta-barrel domain superfamily NIY04_03125 IPR010916 TonB box, conserved site NIY04_03125 IPR010101 TonB-dependent vitamin B12 transporter BtuB NIY04_03125 IPR039426 Vitamin B12 transporter BtuB-like NIY04_03130 IPR013785 Aldolase-type TIM barrel NIY04_03130 IPR011060 Ribulose-phosphate binding barrel NIY04_03130 IPR001240 N-(5'phosphoribosyl) anthranilate isomerase (PRAI) NIY04_03135 IPR001926 Pyridoxal-phosphate dependent enzyme NIY04_03135 IPR006653 Tryptophan synthase, beta chain, conserved site NIY04_03135 IPR006654 Tryptophan synthase, beta chain NIY04_03135 IPR023026 Tryptophan synthase beta chain/beta chain-like NIY04_03135 IPR036052 Tryptophan synthase beta subunit-like PLP-dependent enzyme NIY04_03160 IPR011060 Ribulose-phosphate binding barrel NIY04_03160 IPR013785 Aldolase-type TIM barrel NIY04_03160 IPR018204 Tryptophan synthase, alpha chain, active site NIY04_03160 IPR002028 Tryptophan synthase, alpha chain NIY04_03165 IPR034733 Acetyl-CoA carboxylase NIY04_03165 IPR000438 Acetyl-CoA carboxylase carboxyl transferase, beta subunit NIY04_03165 IPR029045 ClpP/crotonase-like domain superfamily NIY04_03165 IPR011762 Acetyl-coenzyme A carboxyltransferase, N-terminal NIY04_03170 IPR001645 Folylpolyglutamate synthetase NIY04_03170 IPR018109 Folylpolyglutamate synthetase, conserved site NIY04_03170 IPR036565 Mur-like, catalytic domain superfamily NIY04_03170 IPR036615 Mur ligase, C-terminal domain superfamily NIY04_03170 IPR013221 Mur ligase, central NIY04_03170 IPR004101 Mur ligase, C-terminal NIY04_03185 IPR001279 Metallo-beta-lactamase NIY04_03185 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like NIY04_03190 IPR022915 Peroxiredoxin, TDXH subfamily NIY04_03190 IPR013766 Thioredoxin domain NIY04_03190 IPR036249 Thioredoxin-like superfamily NIY04_03190 IPR000866 Alkyl hydroperoxide reductase subunit C/ Thiol specific antioxidant NIY04_03190 IPR024706 Peroxiredoxin, AhpC-type NIY04_03190 IPR019479 Peroxiredoxin, C-terminal NIY04_03195 IPR011116 SecA Wing/Scaffold NIY04_03195 IPR000185 Protein translocase subunit SecA NIY04_03195 IPR036670 SecA, preprotein cross-linking domain superfamily NIY04_03195 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIY04_03195 IPR004027 SEC-C motif NIY04_03195 IPR020937 SecA conserved site NIY04_03195 IPR036266 SecA, Wing/Scaffold superfamily NIY04_03195 IPR011115 SecA DEAD-like, N-terminal NIY04_03195 IPR011130 SecA, preprotein cross-linking domain NIY04_03195 IPR014018 SecA motor DEAD NIY04_03205 IPR005828 Major facilitator, sugar transporter-like NIY04_03205 IPR020846 Major facilitator superfamily domain NIY04_03205 IPR011701 Major facilitator superfamily NIY04_03205 IPR036259 MFS transporter superfamily NIY04_03205 IPR004736 MFS transporter, metabolite:H symporter NIY04_03205 IPR005829 Sugar transporter, conserved site NIY04_03210 IPR005744 Hly-III NIY04_03210 IPR004254 AdipoR/Haemolysin-III-related NIY04_03220 IPR039143 Glucosamine 6-phosphate N-acetyltransferase NIY04_03220 IPR000182 GNAT domain NIY04_03220 IPR016181 Acyl-CoA N-acyltransferase NIY04_03235 IPR036291 NAD(P)-binding domain superfamily NIY04_03235 IPR012802 Fatty oxidation complex, alpha subunit FadJ NIY04_03235 IPR006180 3-hydroxyacyl-CoA dehydrogenase, conserved site NIY04_03235 IPR001753 Enoyl-CoA hydratase/isomerase NIY04_03235 IPR029045 ClpP/crotonase-like domain superfamily NIY04_03235 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily NIY04_03235 IPR006108 3-hydroxyacyl-CoA dehydrogenase, C-terminal NIY04_03235 IPR006176 3-hydroxyacyl-CoA dehydrogenase, NAD binding NIY04_03240 IPR020613 Thiolase, conserved site NIY04_03240 IPR020617 Thiolase, C-terminal NIY04_03240 IPR020616 Thiolase, N-terminal NIY04_03240 IPR020615 Thiolase, acyl-enzyme intermediate active site NIY04_03240 IPR016039 Thiolase-like NIY04_03240 IPR020610 Thiolase, active site NIY04_03240 IPR002155 Thiolase NIY04_03245 IPR003313 AraC-type arabinose-binding/dimerisation domain NIY04_03245 IPR009057 Homeobox-like domain superfamily NIY04_03245 IPR037923 Transcription regulator HTH-like NIY04_03245 IPR018060 DNA binding HTH domain, AraC-type NIY04_03245 IPR018062 HTH domain AraC-type, conserved site NIY04_03245 IPR020449 Transcription regulator HTH, AraC- type NIY04_03250 IPR003673 CoA-transferase family III NIY04_03250 IPR023606 CoA-transferase family III domain superfamily NIY04_03255 IPR038673 Carbohydrate-selective porin OprB superfamily NIY04_03255 IPR007049 Carbohydrate-selective porin OprB NIY04_03260 IPR001479 Quinoprotein dehydrogenase, conserved site NIY04_03260 IPR011047 Quinoprotein alcohol dehydrogenase-like superfamily NIY04_03260 IPR017511 PQQ-dependent membrane bound dehydrogenase NIY04_03260 IPR002372 Pyrrolo-quinoline quinone repeat NIY04_03260 IPR018391 Pyrrolo-quinoline quinone beta-propeller repeat NIY04_03265 IPR005117 Nitrite/Sulfite reductase ferredoxin-like domain NIY04_03265 IPR036136 Nitrite/Sulfite reductase ferredoxin-like domain superfamily NIY04_03265 IPR006067 Nitrite/sulphite reductase 4Fe-4S domain NIY04_03265 IPR006066 Nitrite/sulphite reductase iron-sulphur/sirohaem-binding site NIY04_03275 IPR000390 Small multidrug resistance protein family NIY04_03285 IPR020613 Thiolase, conserved site NIY04_03285 IPR020617 Thiolase, C-terminal NIY04_03285 IPR020616 Thiolase, N-terminal NIY04_03285 IPR020615 Thiolase, acyl-enzyme intermediate active site NIY04_03285 IPR016039 Thiolase-like NIY04_03285 IPR020610 Thiolase, active site NIY04_03285 IPR002155 Thiolase NIY04_03295 IPR036737 OmpA-like domain superfamily NIY04_03295 IPR027385 Outer membrane protein beta-barrel domain NIY04_03295 IPR006664 Outer membrane protein, bacterial NIY04_03295 IPR011250 Outer membrane protein/outer membrane enzyme PagP, beta-barrel NIY04_03295 IPR006665 OmpA-like domain NIY04_03305 IPR001233 tRNA-splicing ligase, RtcB NIY04_03305 IPR036025 tRNA-splicing ligase RtcB-like superfamily NIY04_03310 IPR004841 Amino acid permease/ SLC12A domain NIY04_03310 IPR004840 Amino acid permease, conserved site NIY04_03315 IPR002052 DNA methylase, N-6 adenine-specific, conserved site NIY04_03315 IPR013675 Methyltransferase small, N-terminal NIY04_03315 IPR023543 rRNA small subunit methyltransferase C NIY04_03315 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase NIY04_03315 IPR007848 Methyltransferase small domain NIY04_03320 IPR006042 Xanthine/uracil permease NIY04_03320 IPR006043 Xanthine/uracil/vitamin C permease NIY04_03325 IPR006298 GTP-binding protein TypA NIY04_03325 IPR042116 GTP-binding protein TypA/BipA, C-terminal NIY04_03325 IPR009000 Translation protein, beta-barrel domain superfamily NIY04_03325 IPR000795 Transcription factor, GTP-binding domain NIY04_03325 IPR005225 Small GTP-binding protein domain NIY04_03325 IPR031157 Tr-type G domain, conserved site NIY04_03325 IPR004161 Translation elongation factor EFTu-like, domain 2 NIY04_03325 IPR000640 Elongation factor EFG, domain V-like NIY04_03325 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIY04_03325 IPR035647 EF-G domain III/V-like NIY04_03325 IPR035651 BipA, domain V NIY04_03330 IPR037673 Large-conductance mechanosensitive channel/anditomin synthesis protein L NIY04_03330 IPR001185 Large-conductance mechanosensitive channel NIY04_03330 IPR019823 Large-conductance mechanosensitive channel, conserved site NIY04_03330 IPR036019 Gated mechanosensitive channel NIY04_03340 IPR027304 Trigger factor/SurA domain superfamily NIY04_03340 IPR023058 Peptidyl-prolyl cis-trans isomerase, PpiC-type, conserved site NIY04_03340 IPR000297 Peptidyl-prolyl cis-trans isomerase, PpiC-type NIY04_03340 IPR023059 Foldase protein PrsA NIY04_03345 IPR010979 Ribosomal protein S13-like, H2TH NIY04_03345 IPR020629 Formamidopyrimidine-DNA glycosylase NIY04_03345 IPR015886 DNA glycosylase/AP lyase, H2TH DNA-binding NIY04_03345 IPR012319 Formamidopyrimidine-DNA glycosylase, catalytic domain NIY04_03345 IPR035937 MutM-like, N-terminal NIY04_03345 IPR000214 Zinc finger, DNA glycosylase/AP lyase-type NIY04_03345 IPR010663 Zinc finger, FPG/IleRS-type NIY04_03350 IPR011034 Formyl transferase-like, C-terminal domain superfamily NIY04_03350 IPR003180 Methylpurine-DNA glycosylase NIY04_03350 IPR036995 Methylpurine-DNA glycosylase superfamily NIY04_03355 IPR010105 TonB-dependent siderophore receptor NIY04_03355 IPR036942 TonB-dependent receptor-like, beta-barrel domain superfamily NIY04_03355 IPR000531 TonB-dependent receptor-like, beta-barrel NIY04_03355 IPR039426 Vitamin B12 transporter BtuB-like NIY04_03355 IPR012910 TonB-dependent receptor, plug domain NIY04_03355 IPR037066 TonB-dependent receptor, plug domain superfamily NIY04_03360 IPR001155 NADH:flavin oxidoreductase/NADH oxidase, N-terminal NIY04_03360 IPR013785 Aldolase-type TIM barrel NIY04_03360 IPR023663 NADPH dehydrogenase NIY04_03375 IPR036249 Thioredoxin-like superfamily NIY04_03375 IPR017937 Thioredoxin, conserved site NIY04_03375 IPR012336 Thioredoxin-like fold NIY04_03375 IPR009094 Disulphide bond isomerase DsbC/G, N-terminal domain superfamily NIY04_03375 IPR018950 Disulphide bond isomerase, DsbC/G, N-terminal NIY04_03375 IPR033954 Disulphide bond isomerase, DsbC/G NIY04_03380 IPR017703 YgfZ/GcvT conserved site NIY04_03380 IPR006222 Aminomethyltransferase, folate-binding domain NIY04_03380 IPR028896 Aminomethyltransferase-like NIY04_03380 IPR029043 Glycine cleavage T-protein/YgfZ, C-terminal NIY04_03390 IPR007438 Protein of unknown function DUF488 NIY04_03395 IPR013987 PhnA protein, N-terminal NIY04_03395 IPR004624 PhnA protein NIY04_03395 IPR013988 PhnA protein, C-terminal NIY04_03400 IPR036913 YegP-like superfamily NIY04_03400 IPR010879 Domain of unknown function DUF1508 NIY04_03405 IPR002316 Proline-tRNA ligase, class IIa NIY04_03405 IPR002314 Aminoacyl-tRNA synthetase, class II (G/ P/ S/T) NIY04_03405 IPR006195 Aminoacyl-tRNA synthetase, class II NIY04_03405 IPR004154 Anticodon-binding NIY04_03405 IPR023717 Prolyl-tRNA synthetase, class IIa, type 1 NIY04_03405 IPR033730 Prokaryote proline-tRNA ligase core domain NIY04_03405 IPR036754 YbaK/aminoacyl-tRNA synthetase-associated domain superfamily NIY04_03405 IPR007214 YbaK/aminoacyl-tRNA synthetase-associated domain NIY04_03405 IPR036621 Anticodon-binding domain superfamily NIY04_03405 IPR004500 Prolyl-tRNA synthetase, class IIa, bacterial-type NIY04_03410 IPR001036 Acriflavin resistance protein NIY04_03410 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains NIY04_03425 IPR001789 Signal transduction response regulator, receiver domain NIY04_03425 IPR011006 CheY-like superfamily NIY04_03430 IPR001789 Signal transduction response regulator, receiver domain NIY04_03430 IPR011006 CheY-like superfamily NIY04_03435 IPR039315 Chemotaxis protein CheW NIY04_03435 IPR036061 CheW-like domain superfamily NIY04_03435 IPR002545 CheW-like domain NIY04_03440 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain NIY04_03440 IPR004090 Chemotaxis methyl-accepting receptor NIY04_03440 IPR029095 NarX-like, N-terminal NIY04_03440 IPR003660 HAMP domain NIY04_03445 IPR004358 Signal transduction histidine kinase-related protein, C-terminal NIY04_03445 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain NIY04_03445 IPR001789 Signal transduction response regulator, receiver domain NIY04_03445 IPR036641 HPT domain superfamily NIY04_03445 IPR005467 Histidine kinase domain NIY04_03445 IPR036890 Histidine kinase/HSP90-like ATPase superfamily NIY04_03445 IPR003594 Histidine kinase/HSP90-like ATPase NIY04_03445 IPR011006 CheY-like superfamily NIY04_03445 IPR002545 CheW-like domain NIY04_03445 IPR036061 CheW-like domain superfamily NIY04_03455 IPR002933 Peptidase M20 NIY04_03455 IPR036264 Bacterial exopeptidase dimerisation domain NIY04_03455 IPR005941 Succinyl-diaminopimelate desuccinylase, proteobacteria NIY04_03455 IPR011650 Peptidase M20, dimerisation domain NIY04_03460 IPR012556 Entericidin A/B NIY04_03470 IPR007401 Protein of unknown function DUF454 NIY04_03475 IPR041597 L,D-transpeptidase C-terminal domain NIY04_03475 IPR005490 L,D-transpeptidase catalytic domain NIY04_03475 IPR038063 L,D-transpeptidase catalytic domain-like NIY04_03515 IPR010199 Sulphite reductase [NADPH] flavoprotein, alpha chain NIY04_03515 IPR008254 Flavodoxin/nitric oxide synthase NIY04_03515 IPR003097 Sulfite reductase [NADPH] flavoprotein alpha-component-like, FAD-binding NIY04_03515 IPR029758 Sulphite reductase [NADPH] flavoprotein, alpha chain, Proteobacteria NIY04_03515 IPR029039 Flavoprotein-like superfamily NIY04_03515 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase NIY04_03515 IPR039261 Ferredoxin-NADP reductase (FNR), nucleotide-binding domain NIY04_03515 IPR017938 Riboflavin synthase-like beta-barrel NIY04_03515 IPR017927 FAD-binding domain, ferredoxin reductase-type NIY04_03515 IPR023173 NADPH-cytochrome p450 reductase, FAD-binding, alpha-helical domain superfamily NIY04_03515 IPR001094 Flavodoxin-like NIY04_03515 IPR001433 Oxidoreductase FAD/NAD(P)-binding NIY04_03525 IPR010019 Integral membrane protein, YccS NIY04_03525 IPR032692 Integral membrane protein YccS, N-terminal NIY04_03525 IPR010020 Integral membrane protein, YccS/YhfK NIY04_03530 IPR004812 Drug resistance transporter Bcr/CmlA subfamily NIY04_03530 IPR011701 Major facilitator superfamily NIY04_03530 IPR020846 Major facilitator superfamily domain NIY04_03530 IPR036259 MFS transporter superfamily NIY04_03530 IPR004734 Multidrug resistance protein NIY04_03535 IPR000415 Nitroreductase-like NIY04_03535 IPR029479 Nitroreductase NIY04_03550 IPR001463 Sodium:alanine symporter NIY04_03555 IPR001423 Lysophospholipase patatin, conserved site NIY04_03555 IPR002641 Patatin-like phospholipase domain NIY04_03555 IPR016035 Acyl transferase/acyl hydrolase/lysophospholipase NIY04_03560 IPR002912 ACT domain NIY04_03560 IPR001926 Pyridoxal-phosphate dependent enzyme NIY04_03560 IPR000634 Serine/threonine dehydratase, pyridoxal-phosphate-binding site NIY04_03560 IPR005789 Threonine dehydratase, catabolic NIY04_03560 IPR036052 Tryptophan synthase beta subunit-like PLP-dependent enzyme NIY04_03565 IPR009248 SbmA/BacA-like NIY04_03565 IPR036640 ABC transporter type 1, transmembrane domain superfamily NIY04_03570 IPR000718 Peptidase M13 NIY04_03570 IPR018497 Peptidase M13, C-terminal domain NIY04_03570 IPR042089 Peptidase M13, domain 2 NIY04_03570 IPR008753 Peptidase M13, N-terminal domain NIY04_03570 IPR024079 Metallopeptidase, catalytic domain superfamily NIY04_03595 IPR042114 Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase, C-terminal, domain 1 NIY04_03595 IPR004413 Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase, B subunit NIY04_03595 IPR014746 Glutamine synthetase/guanido kinase, catalytic domain NIY04_03595 IPR017959 Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase, subunit B /E NIY04_03595 IPR017958 Glutamyl-tRNA(Gln) amidotransferase, subunit B, conserved site NIY04_03595 IPR023168 Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase, C-terminal, domain 2 NIY04_03595 IPR006075 Aspartyl/Glutamyl-tRNA(Gln) amidotransferase, subunit B/E, catalytic NIY04_03595 IPR003789 Aspartyl/glutamyl-tRNA amidotransferase subunit B-like NIY04_03595 IPR018027 Asn/Gln amidotransferase NIY04_03600 IPR000120 Amidase NIY04_03600 IPR020556 Amidase, conserved site NIY04_03600 IPR023631 Amidase signature domain NIY04_03600 IPR036928 Amidase signature (AS) superfamily NIY04_03600 IPR004412 Glutamyl-tRNA(Gln) amidotransferase A subunit NIY04_03605 IPR003837 Glu-tRNAGln amidotransferase C subunit NIY04_03605 IPR036113 Glu-tRNAGln amidotransferase superfamily, subunit C NIY04_03610 IPR004753 Cell shape determining protein MreB NIY04_03615 IPR042175 Cell/Rod shape-determining protein MreC, domain 2 NIY04_03615 IPR042177 Cell/Rod shape-determining protein MreC, domain 1 NIY04_03615 IPR007221 Rod shape-determining protein MreC NIY04_03620 IPR026034 Cell shape-determining protein MreD, proteobacterial type NIY04_03620 IPR007227 Cell shape-determining protein MreD NIY04_03625 IPR029001 Inosine triphosphate pyrophosphatase-like NIY04_03625 IPR003697 Nucleoside triphosphate pyrophosphatase Maf-like protein NIY04_03630 IPR003029 S1 domain NIY04_03630 IPR022967 RNA-binding domain, S1 NIY04_03630 IPR004659 Ribonuclease E/G NIY04_03630 IPR019307 RNA-binding protein AU-1/Ribonuclease E/G NIY04_03630 IPR012340 Nucleic acid-binding, OB-fold NIY04_03640 IPR004255 O-acyltransferase, WSD1, N-terminal NIY04_03640 IPR009721 O-acyltransferase WSD1, C-terminal NIY04_03640 IPR014292 Acyltransferase, WS/DGAT/MGAT NIY04_03645 IPR002500 Phosphoadenosine phosphosulphate reductase NIY04_03645 IPR004511 Phosphoadenosine phosphosulphate/adenosine 5'-phosphosulphate reductase NIY04_03645 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold NIY04_03645 IPR011798 Adenosine 5'-phosphosulphate reductase NIY04_03650 IPR036412 HAD-like superfamily NIY04_03650 IPR023214 HAD superfamily NIY04_03650 IPR011863 Phosphoserine phosphatase/homoserine phosphotransferase bifunctional protein NIY04_03660 IPR003680 Flavodoxin-like fold NIY04_03660 IPR029039 Flavoprotein-like superfamily NIY04_03680 IPR003824 Undecaprenyl-diphosphatase UppP NIY04_03685 IPR018060 DNA binding HTH domain, AraC-type NIY04_03685 IPR009594 Transcription regulator HTH, AraC, N-terminal NIY04_03685 IPR009057 Homeobox-like domain superfamily NIY04_03690 IPR016039 Thiolase-like NIY04_03690 IPR006162 Phosphopantetheine attachment site NIY04_03690 IPR009081 Phosphopantetheine binding ACP domain NIY04_03690 IPR015083 Polyketide synthase, docking domain NIY04_03690 IPR020806 Polyketide synthase, phosphopantetheine-binding domain NIY04_03690 IPR013968 Polyketide synthase, ketoreductase domain NIY04_03690 IPR020843 Polyketide synthase, enoylreductase domain NIY04_03690 IPR042104 Polyketide synthase, dehydratase domain superfamily NIY04_03690 IPR020841 Polyketide synthase, beta-ketoacyl synthase domain NIY04_03690 IPR001227 Acyl transferase domain superfamily NIY04_03690 IPR036291 NAD(P)-binding domain superfamily NIY04_03690 IPR036736 ACP-like superfamily NIY04_03690 IPR014043 Acyl transferase NIY04_03690 IPR016035 Acyl transferase/acyl hydrolase/lysophospholipase NIY04_03690 IPR032821 Ketoacyl-synthetase, C-terminal extension NIY04_03690 IPR036347 Erythronolide synthase, docking domain superfamily NIY04_03690 IPR013154 Alcohol dehydrogenase, N-terminal NIY04_03690 IPR011032 GroES-like superfamily NIY04_03690 IPR018201 Beta-ketoacyl synthase, active site NIY04_03690 IPR014031 Beta-ketoacyl synthase, C-terminal NIY04_03690 IPR014030 Beta-ketoacyl synthase, N-terminal NIY04_03690 IPR016036 Malonyl-CoA ACP transacylase, ACP-binding NIY04_03690 IPR015357 Erythronolide synthase, docking NIY04_03690 IPR020807 Polyketide synthase, dehydratase domain NIY04_03695 IPR029062 Class I glutamine amidotransferase-like NIY04_03695 IPR002818 DJ-1/PfpI NIY04_03695 IPR017283 Protein/nucleic acid deglycase HchA NIY04_03705 IPR004840 Amino acid permease, conserved site NIY04_03705 IPR004841 Amino acid permease/ SLC12A domain NIY04_03710 IPR007400 PrpF protein NIY04_03710 IPR012709 2-methyl-aconitate isomerase PrpF NIY04_03715 IPR033749 Polyprenyl synthetase, conserved site NIY04_03715 IPR000092 Polyprenyl synthetase NIY04_03715 IPR008949 Isoprenoid synthase domain superfamily NIY04_03720 IPR038056 YjbR-like superfamily NIY04_03720 IPR007351 Uncharacterised protein YjbR NIY04_03725 IPR001107 Band 7 domain NIY04_03725 IPR036013 Band 7/SPFH domain superfamily NIY04_03725 IPR018080 Band 7/stomatin-like, conserved site NIY04_03725 IPR001972 Stomatin family NIY04_03735 IPR016035 Acyl transferase/acyl hydrolase/lysophospholipase NIY04_03735 IPR001423 Lysophospholipase patatin, conserved site NIY04_03735 IPR002641 Patatin-like phospholipase domain NIY04_03755 IPR017850 Alkaline-phosphatase-like, core domain superfamily NIY04_03755 IPR012549 Phosphoethanolamine transferase, N-terminal NIY04_03755 IPR040423 Phosphoethanolamine transferase NIY04_03755 IPR000917 Sulfatase, N-terminal NIY04_03760 IPR001867 OmpR/PhoB-type DNA-binding domain NIY04_03760 IPR039420 Transcriptional regulatory protein WalR-like NIY04_03760 IPR036388 Winged helix-like DNA-binding domain superfamily NIY04_03760 IPR001789 Signal transduction response regulator, receiver domain NIY04_03760 IPR011006 CheY-like superfamily NIY04_03765 IPR004358 Signal transduction histidine kinase-related protein, C-terminal NIY04_03765 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily NIY04_03765 IPR005467 Histidine kinase domain NIY04_03765 IPR013727 Two-component sensor kinase, N-terminal NIY04_03765 IPR003660 HAMP domain NIY04_03765 IPR036890 Histidine kinase/HSP90-like ATPase superfamily NIY04_03765 IPR003594 Histidine kinase/HSP90-like ATPase NIY04_03765 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain NIY04_03775 IPR029020 Ammonium/urea transporter NIY04_03775 IPR001905 Ammonium transporter NIY04_03775 IPR018047 Ammonium transporter, conserved site NIY04_03775 IPR024041 Ammonium transporter AmtB-like domain NIY04_03780 IPR036388 Winged helix-like DNA-binding domain superfamily NIY04_03780 IPR036390 Winged helix DNA-binding domain superfamily NIY04_03780 IPR000847 Transcription regulator HTH, LysR NIY04_03780 IPR005119 LysR, substrate-binding NIY04_03800 IPR033705 Valyl tRNA synthetase, anticodon-binding domain NIY04_03800 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site NIY04_03800 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold NIY04_03800 IPR010978 Class I and II aminoacyl-tRNA synthetase, tRNA-binding arm NIY04_03800 IPR009080 Aminoacyl-tRNA synthetase, class Ia, anticodon-binding NIY04_03800 IPR037118 Valyl-tRNA synthetase, tRNA-binding arm superfamily NIY04_03800 IPR019499 Valyl-tRNA synthetase, tRNA-binding arm NIY04_03800 IPR009008 Valyl/Leucyl/Isoleucyl-tRNA synthetase, editing domain NIY04_03800 IPR002303 Valine-tRNA ligase NIY04_03800 IPR002300 Aminoacyl-tRNA synthetase, class Ia NIY04_03800 IPR013155 Methionyl/Valyl/Leucyl/Isoleucyl-tRNA synthetase, anticodon-binding NIY04_03810 IPR011284 3-oxoacyl-(acyl-carrier-protein) reductase NIY04_03810 IPR036291 NAD(P)-binding domain superfamily NIY04_03810 IPR020904 Short-chain dehydrogenase/reductase, conserved site NIY04_03810 IPR002347 Short-chain dehydrogenase/reductase SDR NIY04_03820 IPR035439 UPF0145 domain superfamily NIY04_03820 IPR002765 Uncharacterised protein family UPF0145 NIY04_03825 IPR002765 Uncharacterised protein family UPF0145 NIY04_03825 IPR035439 UPF0145 domain superfamily NIY04_03830 IPR003423 Outer membrane efflux protein NIY04_03830 IPR010131 RND efflux system, outer membrane lipoprotein, NodT NIY04_03835 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains NIY04_03835 IPR001036 Acriflavin resistance protein NIY04_03835 IPR004764 Hydrophobe/amphiphile efflux-1 HAE1 NIY04_03840 IPR032317 RND efflux pump, membrane fusion protein, barrel-sandwich domain NIY04_03840 IPR006143 RND efflux pump, membrane fusion protein NIY04_03845 IPR036938 Phosphatidic acid phosphatase type 2/haloperoxidase superfamily NIY04_03845 IPR000326 Phosphatidic acid phosphatase type 2/haloperoxidase NIY04_03855 IPR008949 Isoprenoid synthase domain superfamily NIY04_03855 IPR000092 Polyprenyl synthetase NIY04_03855 IPR033749 Polyprenyl synthetase, conserved site NIY04_03865 IPR028909 Ribosomal protein L21-like NIY04_03865 IPR036164 L21-like superfamily NIY04_03865 IPR001787 Ribosomal protein L21 NIY04_03865 IPR018258 Ribosomal protein L21, conserved site NIY04_03870 IPR001684 Ribosomal protein L27 NIY04_03870 IPR018261 Ribosomal protein L27, conserved site NIY04_03875 IPR029046 Lipoprotein localisation LolA/LolB/LppX NIY04_03875 IPR004564 Outer membrane lipoprotein carrier protein LolA-like NIY04_03875 IPR018323 Outer membrane lipoprotein carrier protein LolA, Proteobacteria NIY04_03885 IPR010978 Class I and II aminoacyl-tRNA synthetase, tRNA-binding arm NIY04_03885 IPR033729 Serine-tRNA ligase catalytic core domain NIY04_03885 IPR042103 Serine-tRNA synthetase, type1, N-terminal domain superfamily NIY04_03885 IPR015866 Serine-tRNA synthetase, type1, N-terminal NIY04_03885 IPR002314 Aminoacyl-tRNA synthetase, class II (G/ P/ S/T) NIY04_03885 IPR006195 Aminoacyl-tRNA synthetase, class II NIY04_03885 IPR002317 Serine-tRNA ligase, type1 NIY04_03890 IPR036291 NAD(P)-binding domain superfamily NIY04_03890 IPR003043 Uroporphiryn-III C-methyltransferase, conserved site NIY04_03890 IPR019478 Sirohaem synthase, dimerisation domain NIY04_03890 IPR006367 Sirohaem synthase, N-terminal NIY04_03890 IPR006366 Uroporphyrin-III C-methyltransferase NIY04_03890 IPR028281 Siroheme synthase, central domain NIY04_03890 IPR014777 Tetrapyrrole methylase, subdomain 1 NIY04_03890 IPR035996 Tetrapyrrole methylase superfamily NIY04_03890 IPR000878 Tetrapyrrole methylase NIY04_03890 IPR037115 Sirohaem synthase, dimerisation domain superfamily NIY04_03890 IPR014776 Tetrapyrrole methylase, subdomain 2 NIY04_03890 IPR012409 Sirohaem synthase NIY04_03895 IPR001537 tRNA/rRNA methyltransferase, SpoU type NIY04_03895 IPR029028 Alpha/beta knot methyltransferases NIY04_03895 IPR016914 tRNA (cytidine/uridine-2'-O-)-methyltransferase NIY04_03895 IPR029026 tRNA (guanine-N1-)-methyltransferase, N-terminal NIY04_03900 IPR002577 Helix-turn-helix, HxlR type NIY04_03900 IPR036388 Winged helix-like DNA-binding domain superfamily NIY04_03900 IPR036390 Winged helix DNA-binding domain superfamily NIY04_03905 IPR008254 Flavodoxin/nitric oxide synthase NIY04_03905 IPR029039 Flavoprotein-like superfamily NIY04_03905 IPR005025 NADPH-dependent FMN reductase-like NIY04_03910 IPR002293 Amino acid/polyamine transporter I NIY04_03915 IPR039697 Iron-type alcohol dehydrogenase-like NIY04_03915 IPR018211 Alcohol dehydrogenase, iron-type, conserved site NIY04_03915 IPR001670 Alcohol dehydrogenase, iron-type/glycerol dehydrogenase GldA NIY04_03925 IPR004143 Biotinyl protein ligase (BPL) and lipoyl protein ligase (LPL), catalytic domain NIY04_03925 IPR020605 Octanoyltransferase, conserved site NIY04_03925 IPR000544 Octanoyltransferase NIY04_03930 IPR027471 YbeD-like domain superfamily NIY04_03930 IPR007454 Uncharacterised protein family UPF0250 NIY04_03935 IPR014284 RNA polymerase sigma-70 like domain NIY04_03935 IPR000943 RNA polymerase sigma-70 NIY04_03935 IPR009042 RNA polymerase sigma-70 region 1.2 NIY04_03935 IPR007627 RNA polymerase sigma-70 region 2 NIY04_03935 IPR036388 Winged helix-like DNA-binding domain superfamily NIY04_03935 IPR007127 RNA polymerase sigma factor 70, region 1.1 NIY04_03935 IPR007630 RNA polymerase sigma-70 region 4 NIY04_03935 IPR013325 RNA polymerase sigma factor, region 2 NIY04_03935 IPR013324 RNA polymerase sigma factor, region 3/4-like NIY04_03935 IPR012760 RNA polymerase sigma factor RpoD, C-terminal NIY04_03935 IPR028630 RNA polymerase sigma factor RpoD NIY04_03935 IPR007631 RNA polymerase sigma factor 70, non-essential domain NIY04_03935 IPR007624 RNA polymerase sigma-70 region 3 NIY04_03935 IPR042189 Sigma-70 factor, region 1.1 superfamily NIY04_03955 IPR001763 Rhodanese-like domain NIY04_03955 IPR036873 Rhodanese-like domain superfamily NIY04_03955 IPR020936 Uncharacterised protein family UPF0176 NIY04_03955 IPR040503 UPF0176, acylphosphatase-like domain NIY04_03965 IPR016142 Citrate synthase-like, large alpha subdomain NIY04_03965 IPR016143 Citrate synthase-like, small alpha subdomain NIY04_03965 IPR002020 Citrate synthase NIY04_03965 IPR019810 Citrate synthase active site NIY04_03965 IPR024176 Citrate synthase, bacterial-type NIY04_03965 IPR036969 Citrate synthase superfamily NIY04_03965 IPR010953 Citrate synthase, type I NIY04_03970 IPR034804 Fumarate reductase/succinate dehydrogenase, transmembrane subunit NIY04_03970 IPR018495 Succinate dehydrogenase, cytochrome b subunit, conserved site NIY04_03970 IPR014314 Succinate dehydrogenase, cytochrome b556 subunit NIY04_03970 IPR000701 Succinate dehydrogenase/fumarate reductase type B, transmembrane subunit NIY04_03975 IPR000701 Succinate dehydrogenase/fumarate reductase type B, transmembrane subunit NIY04_03975 IPR034804 Fumarate reductase/succinate dehydrogenase, transmembrane subunit NIY04_03975 IPR014312 Succinate dehydrogenase, hydrophobic membrane anchor NIY04_03980 IPR003953 FAD-dependent oxidoreductase 2, FAD binding domain NIY04_03980 IPR036188 FAD/NAD(P)-binding domain superfamily NIY04_03980 IPR003952 Fumarate reductase/succinate dehydrogenase, FAD-binding site NIY04_03980 IPR037099 Fumarate reductase/succinate dehydrogenase flavoprotein-like, C-terminal domain superfamily NIY04_03980 IPR015939 Fumarate reductase/succinate dehydrogenase flavoprotein-like, C-terminal NIY04_03980 IPR027477 Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain superfamily NIY04_03980 IPR011281 Succinate dehydrogenase, flavoprotein subunit NIY04_03980 IPR014006 Succinate dehydrogenase/fumarate reductase, flavoprotein subunit NIY04_03985 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site NIY04_03985 IPR036010 2Fe-2S ferredoxin-like superfamily NIY04_03985 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain NIY04_03985 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain NIY04_03985 IPR012675 Beta-grasp domain superfamily NIY04_03985 IPR009051 Alpha-helical ferredoxin NIY04_03985 IPR025192 Succinate dehydogenase/fumarate reductase N-terminal NIY04_03985 IPR004489 Succinate dehydrogenase/fumarate reductase iron-sulphur protein NIY04_04000 IPR032106 2-oxoglutarate dehydrogenase E1 component, N-terminal domain NIY04_04000 IPR011603 2-oxoglutarate dehydrogenase E1 component NIY04_04000 IPR001017 Dehydrogenase, E1 component NIY04_04000 IPR031717 Multifunctional 2-oxoglutarate metabolism enzyme, C-terminal NIY04_04000 IPR042179 Multifunctional 2-oxoglutarate metabolism enzyme, C-terminal domain superfamily NIY04_04000 IPR029061 Thiamin diphosphate-binding fold NIY04_04000 IPR005475 Transketolase-like, pyrimidine-binding domain NIY04_04005 IPR006255 Dihydrolipoamide succinyltransferase NIY04_04005 IPR004167 Peripheral subunit-binding domain NIY04_04005 IPR036625 E3-binding domain superfamily NIY04_04005 IPR011053 Single hybrid motif NIY04_04005 IPR000089 Biotin/lipoyl attachment NIY04_04005 IPR001078 2-oxoacid dehydrogenase acyltransferase, catalytic domain NIY04_04005 IPR003016 2-oxo acid dehydrogenase, lipoyl-binding site NIY04_04005 IPR023213 Chloramphenicol acetyltransferase-like domain superfamily NIY04_04010 IPR012999 Pyridine nucleotide-disulphide oxidoreductase, class I, active site NIY04_04010 IPR004099 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain NIY04_04010 IPR006258 Dihydrolipoamide dehydrogenase NIY04_04010 IPR001100 Pyridine nucleotide-disulphide oxidoreductase, class I NIY04_04010 IPR023753 FAD/NAD(P)-binding domain NIY04_04010 IPR036188 FAD/NAD(P)-binding domain superfamily NIY04_04010 IPR016156 FAD/NAD-linked reductase, dimerisation domain superfamily NIY04_04015 IPR005809 Succinate--CoA synthetase, beta subunit NIY04_04015 IPR011761 ATP-grasp fold NIY04_04015 IPR013650 ATP-grasp fold, succinyl-CoA synthetase-type NIY04_04015 IPR013815 ATP-grasp fold, subdomain 1 NIY04_04015 IPR005811 ATP-citrate lyase/succinyl-CoA ligase NIY04_04015 IPR017866 Succinyl-CoA synthetase, beta subunit, conserved site NIY04_04015 IPR016102 Succinyl-CoA synthetase-like NIY04_04020 IPR036291 NAD(P)-binding domain superfamily NIY04_04020 IPR016102 Succinyl-CoA synthetase-like NIY04_04020 IPR005811 ATP-citrate lyase/succinyl-CoA ligase NIY04_04020 IPR033847 ATP-citrate lyase/succinyl-CoA ligase, conserved site NIY04_04020 IPR003781 CoA-binding NIY04_04020 IPR005810 Succinyl-CoA ligase, alpha subunit NIY04_04020 IPR017440 ATP-citrate lyase/succinyl-CoA ligase, active site NIY04_04025 IPR002305 Aminoacyl-tRNA synthetase, class Ic NIY04_04025 IPR024109 Tryptophan-tRNA ligase, bacterial-type NIY04_04025 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site NIY04_04025 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold NIY04_04025 IPR002306 Tryptophan-tRNA ligase NIY04_04030 IPR008526 Inner membrane protein YedI NIY04_04035 IPR007343 Uncharacterised protein family, zinc metallopeptidase putative NIY04_04040 IPR006153 Cation/H+ exchanger NIY04_04040 IPR018422 Cation/H+ exchanger, CPA1 family NIY04_04040 IPR038770 Sodium/solute symporter superfamily NIY04_04055 IPR019079 Capsule synthesis protein, CapA NIY04_04055 IPR029052 Metallo-dependent phosphatase-like NIY04_04065 IPR036388 Winged helix-like DNA-binding domain superfamily NIY04_04065 IPR036217 Methylated DNA-protein cysteine methyltransferase, DNA binding domain NIY04_04065 IPR014048 Methylated-DNA-[protein]-cysteine S-methyltransferase, DNA binding NIY04_04070 IPR006015 Universal stress protein A family NIY04_04070 IPR006016 UspA NIY04_04070 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold NIY04_04075 IPR001451 Hexapeptide repeat NIY04_04075 IPR018357 Hexapeptide transferase, conserved site NIY04_04075 IPR011004 Trimeric LpxA-like superfamily NIY04_04080 IPR035959 RutC-like superfamily NIY04_04080 IPR006175 YjgF/YER057c/UK114 family NIY04_04080 IPR038743 YjgH-like NIY04_04090 IPR036805 Transcription elongation factor, GreA/GreB, N-terminal domain superfamily NIY04_04090 IPR022691 Transcription elongation factor, GreA/GreB, N-terminal NIY04_04090 IPR023459 Transcription elongation factor GreA/GreB family NIY04_04090 IPR001437 Transcription elongation factor, GreA/GreB, C-terminal NIY04_04090 IPR006359 Transcription elongation factor GreA NIY04_04090 IPR018151 Transcription elongation factor, GreA/GreB, conserved site NIY04_04090 IPR036953 Transcription elongation factor GreA/GreB, C-terminal domain superfamily NIY04_04090 IPR028624 Transcription elongation factor GreA/GreB NIY04_04095 IPR016185 Pre-ATP-grasp domain superfamily NIY04_04095 IPR033937 Carbamoyl-phosphate synthase large chain, methylglyoxal synthase-like domain NIY04_04095 IPR036914 Methylglyoxal synthase-like domain superfamily NIY04_04095 IPR011607 Methylglyoxal synthase-like domain NIY04_04095 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain NIY04_04095 IPR036897 Carbamoyl-phosphate synthetase, large subunit oligomerisation domain superfamily NIY04_04095 IPR005480 Carbamoyl-phosphate synthetase, large subunit oligomerisation domain NIY04_04095 IPR006275 Carbamoyl-phosphate synthase, large subunit NIY04_04095 IPR011761 ATP-grasp fold NIY04_04095 IPR005483 Carbamoyl-phosphate synthase large subunit, CPSase domain NIY04_04100 IPR017926 Glutamine amidotransferase NIY04_04100 IPR035686 Carbamoyl-phosphate synthase small subunit, GATase1 domain NIY04_04100 IPR002474 Carbamoyl-phosphate synthase small subunit, N-terminal domain NIY04_04100 IPR036480 Carbamoyl-phosphate synthase small subunit, N-terminal domain superfamily NIY04_04100 IPR006274 Carbamoyl-phosphate synthase, small subunit NIY04_04100 IPR029062 Class I glutamine amidotransferase-like NIY04_04115 IPR001890 RNA-binding, CRM domain NIY04_04115 IPR017924 RNA-binding protein YhbY NIY04_04115 IPR035920 YhbY-like superfamily NIY04_04120 IPR015507 Ribosomal RNA large subunit methyltransferase E NIY04_04120 IPR002877 Ribosomal RNA methyltransferase FtsJ domain NIY04_04120 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase NIY04_04125 IPR003593 AAA+ ATPase domain NIY04_04125 IPR041569 AAA ATPase, AAA+ lid domain NIY04_04125 IPR003959 ATPase, AAA-type, core NIY04_04125 IPR003960 ATPase, AAA-type, conserved site NIY04_04125 IPR005936 Peptidase, FtsH NIY04_04125 IPR011546 Peptidase M41, FtsH extracellular NIY04_04125 IPR037219 Peptidase M41-like NIY04_04125 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIY04_04125 IPR000642 Peptidase M41 NIY04_04130 IPR006390 Dihydropteroate synthase NIY04_04130 IPR011005 Dihydropteroate synthase-like NIY04_04130 IPR000489 Pterin-binding domain NIY04_04150 IPR018946 Alkaline phosphatase D-related NIY04_04150 IPR038607 PhoD-like superfamily NIY04_04150 IPR032093 Phospholipase D, N-terminal NIY04_04150 IPR008963 Purple acid phosphatase-like, N-terminal NIY04_04150 IPR006311 Twin-arginine translocation pathway, signal sequence NIY04_04165 IPR020867 Tetrahydrofolate dehydrogenase/cyclohydrolase, conserved site NIY04_04165 IPR036291 NAD(P)-binding domain superfamily NIY04_04165 IPR000672 Tetrahydrofolate dehydrogenase/cyclohydrolase NIY04_04165 IPR020630 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain NIY04_04165 IPR020631 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain NIY04_04170 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase NIY04_04170 IPR004498 Ribosomal protein L11 methyltransferase NIY04_04180 IPR004736 MFS transporter, metabolite:H symporter NIY04_04180 IPR036259 MFS transporter superfamily NIY04_04180 IPR005828 Major facilitator, sugar transporter-like NIY04_04180 IPR005829 Sugar transporter, conserved site NIY04_04180 IPR020846 Major facilitator superfamily domain NIY04_04185 IPR000577 Carbohydrate kinase, FGGY NIY04_04185 IPR018485 Carbohydrate kinase, FGGY, C-terminal NIY04_04185 IPR018483 Carbohydrate kinase, FGGY, conserved site NIY04_04185 IPR018484 Carbohydrate kinase, FGGY, N-terminal NIY04_04185 IPR005999 Glycerol kinase NIY04_04190 IPR038299 Alpha-glycerophosphate oxidase, C-terminal domain superfamily NIY04_04190 IPR031656 Alpha-glycerophosphate oxidase, C-terminal NIY04_04190 IPR006076 FAD dependent oxidoreductase NIY04_04190 IPR036188 FAD/NAD(P)-binding domain superfamily NIY04_04190 IPR000447 FAD-dependent glycerol-3-phosphate dehydrogenase NIY04_04195 IPR035077 Phosphoenolpyruvate carboxykinase, C-terminal P-loop domain NIY04_04195 IPR008209 Phosphoenolpyruvate carboxykinase, GTP-utilising NIY04_04195 IPR008210 Phosphoenolpyruvate carboxykinase, N-terminal NIY04_04195 IPR018091 Phosphoenolpyruvate carboxykinase, GTP-utilising, conserved site NIY04_04195 IPR035078 Phosphoenolpyruvate carboxykinase, GTP-utilising, N-terminal NIY04_04195 IPR013035 Phosphoenolpyruvate carboxykinase, C-terminal NIY04_04200 IPR016064 NAD kinase/diacylglycerol kinase-like domain superfamily NIY04_04200 IPR001206 Diacylglycerol kinase, catalytic domain NIY04_04200 IPR017438 Inorganic polyphosphate/ATP-NAD kinase, N-terminal NIY04_04205 IPR004843 Calcineurin-like phosphoesterase domain, ApaH type NIY04_04205 IPR026575 3,5-cyclic adenosine monophosphate phosphodiesterase CpdA NIY04_04205 IPR042281 GpdQ, beta-strand dimerisation domain NIY04_04205 IPR042283 GpdQ, catalytic alpha/beta sandwich domain NIY04_04210 IPR011032 GroES-like superfamily NIY04_04210 IPR020818 GroES chaperonin family NIY04_04210 IPR037124 GroES chaperonin superfamily NIY04_04210 IPR018369 Chaperonin GroES, conserved site NIY04_04215 IPR018370 Chaperonin Cpn60, conserved site NIY04_04215 IPR001844 Chaperonin Cpn60 NIY04_04215 IPR002423 Chaperonin Cpn60/TCP-1 family NIY04_04215 IPR027409 GroEL-like apical domain superfamily NIY04_04215 IPR027413 GroEL-like equatorial domain superfamily NIY04_04215 IPR027410 TCP-1-like chaperonin intermediate domain superfamily NIY04_04220 IPR033718 Diacylglycerol kinase, prokaryotic NIY04_04220 IPR036945 Diacylglycerol kinase (DAGK) superfamily NIY04_04220 IPR000829 DAGK family NIY04_04225 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like NIY04_04225 IPR001279 Metallo-beta-lactamase NIY04_04230 IPR030395 Glycerophosphodiester phosphodiesterase domain NIY04_04230 IPR017946 PLC-like phosphodiesterase, TIM beta/alpha-barrel domain superfamily NIY04_04235 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains NIY04_04235 IPR001036 Acriflavin resistance protein NIY04_04235 IPR004764 Hydrophobe/amphiphile efflux-1 HAE1 NIY04_04245 IPR022919 Peptidase M48, protease HtpX, putative NIY04_04245 IPR001915 Peptidase M48 NIY04_04250 IPR023346 Lysozyme-like domain superfamily NIY04_04250 IPR000189 Prokaryotic transglycosylase, active site NIY04_04250 IPR008258 Transglycosylase SLT domain 1 NIY04_04255 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold NIY04_04255 IPR011063 tRNA(Ile)-lysidine/2-thiocytidine synthase, N-terminal NIY04_04255 IPR012089 tRNA-cytidine(32) 2-sulfurtransferase NIY04_04255 IPR035107 tRNA thiolation protein, TtcA/Ctu1 type NIY04_04265 IPR008258 Transglycosylase SLT domain 1 NIY04_04265 IPR023346 Lysozyme-like domain superfamily NIY04_04265 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF NIY04_04265 IPR000189 Prokaryotic transglycosylase, active site NIY04_04265 IPR023703 Membrane-bound lytic murein transglycosylase F NIY04_04270 IPR036953 Transcription elongation factor GreA/GreB, C-terminal domain superfamily NIY04_04270 IPR018151 Transcription elongation factor, GreA/GreB, conserved site NIY04_04270 IPR028624 Transcription elongation factor GreA/GreB NIY04_04270 IPR001437 Transcription elongation factor, GreA/GreB, C-terminal NIY04_04270 IPR023459 Transcription elongation factor GreA/GreB family NIY04_04270 IPR022691 Transcription elongation factor, GreA/GreB, N-terminal NIY04_04270 IPR036805 Transcription elongation factor, GreA/GreB, N-terminal domain superfamily NIY04_04270 IPR006358 Transcription elongation factor GreB NIY04_04285 IPR001031 Thioesterase NIY04_04285 IPR009081 Phosphopantetheine binding ACP domain NIY04_04285 IPR020802 Polyketide synthase, thioesterase domain NIY04_04285 IPR020806 Polyketide synthase, phosphopantetheine-binding domain NIY04_04285 IPR023213 Chloramphenicol acetyltransferase-like domain superfamily NIY04_04285 IPR001242 Condensation domain NIY04_04285 IPR000873 AMP-dependent synthetase/ligase NIY04_04285 IPR020845 AMP-binding, conserved site NIY04_04285 IPR025110 AMP-binding enzyme, C-terminal domain NIY04_04285 IPR036736 ACP-like superfamily NIY04_04285 IPR029058 Alpha/Beta hydrolase fold NIY04_04285 IPR042099 AMP-dependent synthetase-like superfamily NIY04_04285 IPR010071 Amino acid adenylation domain NIY04_04295 IPR018654 Putative toxin of bacterial toxin-antitoxin pair NIY04_04355 IPR000415 Nitroreductase-like NIY04_04355 IPR029479 Nitroreductase NIY04_04360 IPR036291 NAD(P)-binding domain superfamily NIY04_04360 IPR020904 Short-chain dehydrogenase/reductase, conserved site NIY04_04360 IPR002347 Short-chain dehydrogenase/reductase SDR NIY04_04360 IPR011284 3-oxoacyl-(acyl-carrier-protein) reductase NIY04_04370 IPR036129 Glycerate kinase superfamily NIY04_04370 IPR004381 Glycerate kinase NIY04_04370 IPR018197 Glycerate kinase, restriction-enzyme-like fold NIY04_04370 IPR018193 Glycerate kinase, flavodoxin-like fold NIY04_04375 IPR010046 Oxidoreductase alpha (molybdopterin) subunit NIY04_04375 IPR041953 YdeP, molybdopterin-binding oxidoreductase-like domain NIY04_04375 IPR037951 YdeP-like, MopB domain NIY04_04375 IPR009010 Aspartate decarboxylase-like domain superfamily NIY04_04375 IPR006656 Molybdopterin oxidoreductase NIY04_04380 IPR016193 Cytidine deaminase-like NIY04_04380 IPR003786 Sulfur carrier protein FdhD NIY04_04385 IPR010652 Domain of unknown function DUF1232 NIY04_04390 IPR029752 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain conserved site 1 NIY04_04390 IPR006140 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain NIY04_04390 IPR020921 Erythronate-4-phosphate dehydrogenase NIY04_04390 IPR024531 Erythronate-4-phosphate dehydrogenase, dimerisation domain NIY04_04390 IPR036291 NAD(P)-binding domain superfamily NIY04_04390 IPR038251 PdxB, dimerisation domain superfamily NIY04_04390 IPR006139 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain NIY04_04395 IPR004364 Aminoacyl-tRNA synthetase, class II (D/K/N) NIY04_04395 IPR004525 Elongation factor P--(R)-beta-lysine ligase NIY04_04395 IPR018149 Lysyl-tRNA synthetase, class II, C-terminal NIY04_04395 IPR006195 Aminoacyl-tRNA synthetase, class II NIY04_04405 IPR003593 AAA+ ATPase domain NIY04_04405 IPR004504 DNA repair protein RadA NIY04_04405 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIY04_04405 IPR020588 DNA recombination and repair protein RecA-like, ATP-binding domain NIY04_04405 IPR020568 Ribosomal protein S5 domain 2-type fold NIY04_04405 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup NIY04_04405 IPR041166 LapB, rubredoxin metal binding domain NIY04_04410 IPR004841 Amino acid permease/ SLC12A domain NIY04_04410 IPR004840 Amino acid permease, conserved site NIY04_04420 IPR009006 Alanine racemase/group IV decarboxylase, C-terminal NIY04_04420 IPR002986 Diaminopimelate decarboxylase, LysA NIY04_04420 IPR022643 Orn/DAP/Arg decarboxylase 2, C-terminal NIY04_04420 IPR022657 Orn/DAP/Arg decarboxylase 2, conserved site NIY04_04420 IPR022644 Orn/DAP/Arg decarboxylase 2, N-terminal NIY04_04420 IPR022653 Orn/DAP/Arg decarboxylase 2, pyridoxal-phosphate binding site NIY04_04420 IPR000183 Ornithine/DAP/Arg decarboxylase NIY04_04420 IPR029066 PLP-binding barrel NIY04_04425 IPR001653 Diaminopimelate epimerase, DapF NIY04_04425 IPR018510 Diaminopimelate epimerase, active site NIY04_04430 IPR001123 Amino acid exporter protein, LeuE-type NIY04_04430 IPR004778 Homoserine/Threonine efflux protein NIY04_04435 IPR011010 DNA breaking-rejoining enzyme, catalytic core NIY04_04435 IPR013762 Integrase-like, catalytic domain superfamily NIY04_04435 IPR002104 Integrase, catalytic domain NIY04_04435 IPR010998 Integrase/recombinase, N-terminal NIY04_04435 IPR004107 Integrase, SAM-like, N-terminal NIY04_04435 IPR011931 Tyrosine recombinase XerC NIY04_04435 IPR023009 Tyrosine recombinase XerC/XerD NIY04_04440 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold NIY04_04440 IPR033948 Electron transfer flavoprotein, beta subunit, N-terminal NIY04_04440 IPR014730 Electron transfer flavoprotein, alpha/beta-subunit, N-terminal NIY04_04440 IPR000049 Electron transfer flavoprotein, beta-subunit, conserved site NIY04_04440 IPR012255 Electron transfer flavoprotein, beta subunit NIY04_04445 IPR029035 DHS-like NAD/FAD-binding domain superfamily NIY04_04445 IPR014730 Electron transfer flavoprotein, alpha/beta-subunit, N-terminal NIY04_04445 IPR001308 Electron transfer flavoprotein alpha subunit/FixB NIY04_04445 IPR033947 Electron transfer flavoprotein, alpha subunit, N-terminal NIY04_04445 IPR014731 Electron transfer flavoprotein, alpha subunit, C-terminal NIY04_04445 IPR018206 Electron transfer flavoprotein subunit alpha, conserved site NIY04_04445 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold NIY04_04450 IPR013758 DNA topoisomerase, type IIA, subunit A/ C-terminal, alpha-beta NIY04_04450 IPR013757 Type IIA DNA topoisomerase subunit A, alpha-helical domain superfamily NIY04_04450 IPR002205 DNA topoisomerase, type IIA, subunit A/C-terminal NIY04_04450 IPR006691 DNA gyrase/topoisomerase IV, subunit A, C-terminal repeat NIY04_04450 IPR035516 DNA gyrase/topoisomerase IV, subunit A, C-terminal NIY04_04450 IPR013760 DNA topoisomerase, type IIA-like domain superfamily NIY04_04450 IPR005743 DNA gyrase, subunit A NIY04_04465 IPR001173 Glycosyltransferase 2-like NIY04_04465 IPR029044 Nucleotide-diphospho-sugar transferases NIY04_04485 IPR039562 Membrane fusion protein, biotin-lipoyl like domain NIY04_04495 IPR015421 Pyridoxal phosphate-dependent transferase, major domain NIY04_04495 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 NIY04_04495 IPR015424 Pyridoxal phosphate-dependent transferase NIY04_04495 IPR020578 Aminotransferase class-V, pyridoxal-phosphate binding site NIY04_04495 IPR000192 Aminotransferase class V domain NIY04_04495 IPR022278 Phosphoserine aminotransferase NIY04_04510 IPR003791 Protein of unknown function UPF0178 NIY04_04520 IPR003838 ABC transporter permease protein domain NIY04_04520 IPR011925 Lipoprotein-releasing system transmembrane protein LolC/E NIY04_04520 IPR025857 MacB-like periplasmic core domain NIY04_04525 IPR003593 AAA+ ATPase domain NIY04_04525 IPR003439 ABC transporter-like NIY04_04525 IPR017871 ABC transporter, conserved site NIY04_04525 IPR015854 ABC transporter, lipoprotein release, LolD NIY04_04525 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIY04_04530 IPR001279 Metallo-beta-lactamase NIY04_04530 IPR025405 Domain of unknown function DUF4131 NIY04_04530 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like NIY04_04530 IPR004477 ComEC/Rec2-related protein NIY04_04530 IPR004797 Competence protein ComEC/Rec2 NIY04_04530 IPR035681 ComA-like, MBL domain NIY04_04540 IPR023171 Na/H antiporter domain superfamily NIY04_04540 IPR004670 Na+/H+ antiporter NhaA NIY04_04540 IPR002142 Peptidase S49 NIY04_04540 IPR029045 ClpP/crotonase-like domain superfamily NIY04_04545 IPR029058 Alpha/Beta hydrolase fold NIY04_04545 IPR000073 Alpha/beta hydrolase fold-1 NIY04_04550 IPR036477 Formyl transferase, N-terminal domain superfamily NIY04_04550 IPR004607 Phosphoribosylglycinamide formyltransferase NIY04_04550 IPR001555 Phosphoribosylglycinamide formyltransferase, active site NIY04_04550 IPR002376 Formyl transferase, N-terminal NIY04_04555 IPR004733 Phosphoribosylformylglycinamidine cyclo-ligase NIY04_04555 IPR010918 PurM-like, C-terminal domain NIY04_04555 IPR036676 PurM-like, C-terminal domain superfamily NIY04_04555 IPR016188 PurM-like, N-terminal domain NIY04_04555 IPR036921 PurM-like, N-terminal domain superfamily NIY04_04560 IPR002549 Transmembrane protein TqsA-like NIY04_04565 IPR020591 Chromosomal replication control, initiator DnaA-like NIY04_04565 IPR003593 AAA+ ATPase domain NIY04_04565 IPR001957 Chromosomal replication control, initiator DnaA NIY04_04565 IPR018312 Chromosomal replication control, initiator DnaA, conserved site NIY04_04565 IPR013317 Chromosomal replication initiator protein DnaA NIY04_04565 IPR013159 Chromosomal replication initiator, DnaA C-terminal NIY04_04565 IPR024633 DnaA N-terminal domain NIY04_04565 IPR038454 DnaA, N-terminal domain superfamily NIY04_04565 IPR010921 Trp repressor/replication initiator NIY04_04565 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIY04_04595 IPR013123 RNA 2-O ribose methyltransferase, substrate binding NIY04_04595 IPR029028 Alpha/beta knot methyltransferases NIY04_04595 IPR029064 50S ribosomal protein L30e-like NIY04_04595 IPR001537 tRNA/rRNA methyltransferase, SpoU type NIY04_04595 IPR029026 tRNA (guanine-N1-)-methyltransferase, N-terminal NIY04_04600 IPR028343 Fructose-1,6-bisphosphatase NIY04_04600 IPR033391 Fructose-1-6-bisphosphatase class I, N-terminal NIY04_04600 IPR000146 Fructose-1,6-bisphosphatase class 1 NIY04_04610 IPR039001 Peptidoglycan-associated lipoprotein NIY04_04610 IPR006665 OmpA-like domain NIY04_04610 IPR006690 Outer membrane protein, OmpA-like, conserved site NIY04_04610 IPR036737 OmpA-like domain superfamily NIY04_04610 IPR006664 Outer membrane protein, bacterial NIY04_04610 IPR014169 Peptidoglycan-associated lipoprotein, C-terminal NIY04_04615 IPR036752 TolB, N-terminal domain superfamily NIY04_04615 IPR011042 Six-bladed beta-propeller, TolB-like NIY04_04615 IPR011659 WD40-like Beta Propeller NIY04_04615 IPR014167 Tol-Pal system protein TolB NIY04_04615 IPR007195 TolB, N-terminal NIY04_04625 IPR014168 Tol-Pal system protein TolR NIY04_04625 IPR003400 Biopolymer transport protein ExbD/TolR NIY04_04630 IPR002898 MotA/TolQ/ExbB proton channel NIY04_04630 IPR014163 Tol-Pal system, TolQ NIY04_04635 IPR006684 Acyl-CoA thioester hydrolase YbgC/YbaW family NIY04_04635 IPR008272 4-hydroxybenzoyl-CoA thioesterase, active site NIY04_04635 IPR014166 Tol-Pal system-associated acyl-CoA thioesterase NIY04_04635 IPR006683 Thioesterase domain NIY04_04635 IPR029069 HotDog domain superfamily NIY04_04640 IPR011650 Peptidase M20, dimerisation domain NIY04_04640 IPR036264 Bacterial exopeptidase dimerisation domain NIY04_04640 IPR017439 Amidohydrolase NIY04_04640 IPR002933 Peptidase M20 NIY04_04645 IPR036388 Winged helix-like DNA-binding domain superfamily NIY04_04645 IPR008823 RuvB C-terminal winged helix domain NIY04_04645 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIY04_04645 IPR008824 RuvB-like P-loop domain NIY04_04645 IPR036390 Winged helix DNA-binding domain superfamily NIY04_04645 IPR003593 AAA+ ATPase domain NIY04_04645 IPR004605 DNA helicase, Holliday junction RuvB-type NIY04_04645 IPR041445 RuvB, AAA lid domain NIY04_04650 IPR010994 RuvA domain 2-like NIY04_04650 IPR036267 RuvA, C-terminal domain superfamily NIY04_04650 IPR012340 Nucleic acid-binding, OB-fold NIY04_04650 IPR013849 DNA helicase, Holliday junction RuvA type, domain I, bacterial NIY04_04650 IPR003583 Helix-hairpin-helix DNA-binding motif, class 1 NIY04_04650 IPR011114 Holliday junction DNA helicase RuvA, C-terminal NIY04_04650 IPR000085 Bacterial DNA recombination protein RuvA NIY04_04655 IPR023293 Deoxyguanosinetriphosphate triphosphohydrolase, central domain superfamily NIY04_04655 IPR027432 Deoxyguanosinetriphosphate triphosphohydrolase, C-terminal NIY04_04655 IPR006261 dNTP triphosphohydrolase NIY04_04655 IPR023024 dNTP triphosphohydrolase, type 3 NIY04_04655 IPR006674 HD domain NIY04_04655 IPR003607 HD/PDEase domain NIY04_04660 IPR017926 Glutamine amidotransferase NIY04_04660 IPR010073 Phosphoribosylformylglycinamidine synthase PurL NIY04_04660 IPR010918 PurM-like, C-terminal domain NIY04_04660 IPR036676 PurM-like, C-terminal domain superfamily NIY04_04660 IPR036921 PurM-like, N-terminal domain superfamily NIY04_04660 IPR040707 Phosphoribosylformylglycinamidine synthase, N-terminal NIY04_04660 IPR041609 Phosphoribosylformylglycinamidine synthase, linker domain NIY04_04660 IPR036604 Phosphoribosylformylglycinamidine synthase subunit PurS-like superfamily NIY04_04660 IPR029062 Class I glutamine amidotransferase-like NIY04_04675 IPR011646 KAP family P-loop domain NIY04_04675 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIY04_04685 IPR005801 ADC synthase NIY04_04685 IPR015890 Chorismate-utilising enzyme, C-terminal NIY04_04685 IPR004561 Isochorismate synthase NIY04_04695 IPR003560 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase NIY04_04695 IPR036291 NAD(P)-binding domain superfamily NIY04_04695 IPR020904 Short-chain dehydrogenase/reductase, conserved site NIY04_04695 IPR002347 Short-chain dehydrogenase/reductase SDR NIY04_04700 IPR010071 Amino acid adenylation domain NIY04_04700 IPR029058 Alpha/Beta hydrolase fold NIY04_04700 IPR036736 ACP-like superfamily NIY04_04700 IPR020845 AMP-binding, conserved site NIY04_04700 IPR000873 AMP-dependent synthetase/ligase NIY04_04700 IPR042099 AMP-dependent synthetase-like superfamily NIY04_04700 IPR001242 Condensation domain NIY04_04700 IPR020806 Polyketide synthase, phosphopantetheine-binding domain NIY04_04700 IPR009081 Phosphopantetheine binding ACP domain NIY04_04700 IPR006162 Phosphopantetheine attachment site NIY04_04700 IPR023213 Chloramphenicol acetyltransferase-like domain superfamily NIY04_04710 IPR009081 Phosphopantetheine binding ACP domain NIY04_04710 IPR010071 Amino acid adenylation domain NIY04_04710 IPR042099 AMP-dependent synthetase-like superfamily NIY04_04710 IPR000873 AMP-dependent synthetase/ligase NIY04_04710 IPR020845 AMP-binding, conserved site NIY04_04710 IPR023213 Chloramphenicol acetyltransferase-like domain superfamily NIY04_04710 IPR025110 AMP-binding enzyme, C-terminal domain NIY04_04710 IPR036736 ACP-like superfamily NIY04_04710 IPR001242 Condensation domain NIY04_04715 IPR029058 Alpha/Beta hydrolase fold NIY04_04715 IPR025110 AMP-binding enzyme, C-terminal domain NIY04_04715 IPR036736 ACP-like superfamily NIY04_04715 IPR020845 AMP-binding, conserved site NIY04_04715 IPR000873 AMP-dependent synthetase/ligase NIY04_04715 IPR042099 AMP-dependent synthetase-like superfamily NIY04_04715 IPR023213 Chloramphenicol acetyltransferase-like domain superfamily NIY04_04715 IPR001242 Condensation domain NIY04_04715 IPR020806 Polyketide synthase, phosphopantetheine-binding domain NIY04_04715 IPR020802 Polyketide synthase, thioesterase domain NIY04_04715 IPR009081 Phosphopantetheine binding ACP domain NIY04_04715 IPR001031 Thioesterase NIY04_04715 IPR010071 Amino acid adenylation domain NIY04_04720 IPR011963 2,3-dihydroxybenzoate-AMP ligase NIY04_04720 IPR020845 AMP-binding, conserved site NIY04_04720 IPR025110 AMP-binding enzyme, C-terminal domain NIY04_04720 IPR000873 AMP-dependent synthetase/ligase NIY04_04725 IPR025700 L-lysine 6-monooxygenase/L-ornithine 5-monooxygenase NIY04_04725 IPR036188 FAD/NAD(P)-binding domain superfamily NIY04_04730 IPR022657 Orn/DAP/Arg decarboxylase 2, conserved site NIY04_04730 IPR009006 Alanine racemase/group IV decarboxylase, C-terminal NIY04_04730 IPR002986 Diaminopimelate decarboxylase, LysA NIY04_04730 IPR022643 Orn/DAP/Arg decarboxylase 2, C-terminal NIY04_04730 IPR022644 Orn/DAP/Arg decarboxylase 2, N-terminal NIY04_04730 IPR022653 Orn/DAP/Arg decarboxylase 2, pyridoxal-phosphate binding site NIY04_04730 IPR000183 Ornithine/DAP/Arg decarboxylase NIY04_04730 IPR029066 PLP-binding barrel NIY04_04745 IPR008278 4'-phosphopantetheinyl transferase domain NIY04_04745 IPR037143 4'-phosphopantetheinyl transferase domain superfamily NIY04_04745 IPR003542 Enterobactin synthetase-like, component D NIY04_04745 IPR041354 4'-phosphopantetheinyl transferase, N-terminal domain NIY04_04750 IPR012223 Thioesterase type II, NRPS/PKS/S-FAS NIY04_04750 IPR001031 Thioesterase NIY04_04750 IPR029058 Alpha/Beta hydrolase fold NIY04_04755 IPR030149 TonB-dependent siderophore receptor FcuA/FatA NIY04_04755 IPR037066 TonB-dependent receptor, plug domain superfamily NIY04_04755 IPR039423 TonB-dependent receptor-like NIY04_04755 IPR012910 TonB-dependent receptor, plug domain NIY04_04755 IPR000531 TonB-dependent receptor-like, beta-barrel NIY04_04755 IPR036942 TonB-dependent receptor-like, beta-barrel domain superfamily NIY04_04755 IPR010917 TonB-dependent receptor, conserved site NIY04_04755 IPR010105 TonB-dependent siderophore receptor NIY04_04755 IPR010916 TonB box, conserved site NIY04_04770 IPR002528 Multi antimicrobial extrusion protein NIY04_04775 IPR011527 ABC transporter type 1, transmembrane domain NIY04_04775 IPR036640 ABC transporter type 1, transmembrane domain superfamily NIY04_04775 IPR003439 ABC transporter-like NIY04_04775 IPR017871 ABC transporter, conserved site NIY04_04775 IPR039421 Type I protein exporter NIY04_04775 IPR033838 Colicin V processing peptidase NIY04_04775 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIY04_04775 IPR003593 AAA+ ATPase domain NIY04_04775 IPR005074 Peptidase C39, bacteriocin processing NIY04_04780 IPR010129 Type I secretion membrane fusion protein, HlyD family NIY04_04780 IPR006144 Secretion protein HlyD, conserved site NIY04_04810 IPR032750 Transposon Tn7 transposition protein TnsD, C-termianl NIY04_04810 IPR009492 TniQ NIY04_04815 IPR025668 Transposase DDE domain NIY04_04820 IPR009492 TniQ NIY04_04820 IPR032750 Transposon Tn7 transposition protein TnsD, C-termianl NIY04_04825 IPR003593 AAA+ ATPase domain NIY04_04825 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIY04_04825 IPR021542 Tn7 transposition regulator TnsC NIY04_04830 IPR036397 Ribonuclease H superfamily NIY04_04830 IPR001584 Integrase, catalytic core NIY04_04830 IPR012337 Ribonuclease H-like superfamily NIY04_04835 IPR011856 tRNA endonuclease-like domain superfamily NIY04_04835 IPR011335 Restriction endonuclease type II-like NIY04_04835 IPR014832 TnsA endonuclease C-terminal NIY04_04835 IPR014833 TnsA endonuclease, N-terminal NIY04_04835 IPR036388 Winged helix-like DNA-binding domain superfamily NIY04_04835 IPR036390 Winged helix DNA-binding domain superfamily NIY04_04850 IPR036069 GTP cyclohydrolase 1 type 2/Nif3 superfamily NIY04_04850 IPR002678 GTP cyclohydrolase 1 type 2/Nif3 NIY04_04850 IPR015867 Nitrogen regulatory protein PII/ATP phosphoribosyltransferase, C-terminal NIY04_04850 IPR017221 GTP cyclohydrolase 1 type 2//Nif3, bacteria NIY04_04855 IPR001753 Enoyl-CoA hydratase/isomerase NIY04_04855 IPR014748 Enoyl-CoA hydratase, C-terminal NIY04_04855 IPR011968 Phenylacetate degradation probable enoyl-CoA hydratase PaaB NIY04_04855 IPR029045 ClpP/crotonase-like domain superfamily NIY04_04860 IPR004821 Cytidyltransferase-like domain NIY04_04860 IPR041750 Bifunctional NMN adenylyltransferase/Nudix hydrolase, N-terminal NMNAT domain NIY04_04860 IPR020084 NUDIX hydrolase, conserved site NIY04_04860 IPR000086 NUDIX hydrolase domain NIY04_04860 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold NIY04_04860 IPR015797 NUDIX hydrolase-like domain superfamily NIY04_04870 IPR000866 Alkyl hydroperoxide reductase subunit C/ Thiol specific antioxidant NIY04_04870 IPR036249 Thioredoxin-like superfamily NIY04_04870 IPR013766 Thioredoxin domain NIY04_04885 IPR018317 Queuosine biosynthesis protein QueC NIY04_04885 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold NIY04_04890 IPR007197 Radical SAM NIY04_04890 IPR013785 Aldolase-type TIM barrel NIY04_04890 IPR024924 7-carboxy-7-deazaguanine synthase-like NIY04_04895 IPR023180 Tetrahydrodipicolinate-N-succinyltransferase, chain A, domain 1 NIY04_04895 IPR037133 Tetrahydrodipicolinate-N-succinyltransferase, N-terminal domain superfamily NIY04_04895 IPR011004 Trimeric LpxA-like superfamily NIY04_04895 IPR001451 Hexapeptide repeat NIY04_04895 IPR005664 Tetrahydrodipicolinate N-succinyltransferase, transferase hexapeptide repeat family NIY04_04895 IPR018357 Hexapeptide transferase, conserved site NIY04_04905 IPR037423 HTH-type transcriptional regulator CysB, PBP2 domain NIY04_04905 IPR000847 Transcription regulator HTH, LysR NIY04_04905 IPR036388 Winged helix-like DNA-binding domain superfamily NIY04_04905 IPR036390 Winged helix DNA-binding domain superfamily NIY04_04905 IPR005119 LysR, substrate-binding NIY04_04910 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIY04_04910 IPR024765 TOBE-like domain NIY04_04910 IPR005666 Sulphate transport system permease protein 1 NIY04_04910 IPR008995 Molybdate/tungstate binding, C-terminal NIY04_04910 IPR003439 ABC transporter-like NIY04_04910 IPR017871 ABC transporter, conserved site NIY04_04910 IPR003593 AAA+ ATPase domain NIY04_04910 IPR014769 ABC transporter, sulphate/thiosulphate import, ATP-binding protein CysA, C-terminal NIY04_04915 IPR011866 Sulphate ABC transporter, permease protein CysW NIY04_04915 IPR000515 ABC transporter type 1, transmembrane domain MetI-like NIY04_04915 IPR035906 MetI-like superfamily NIY04_04915 IPR005667 Sulphate ABC transporter permease protein 2 NIY04_04920 IPR011865 Sulphate ABC transporter, permease protein CysT NIY04_04920 IPR000515 ABC transporter type 1, transmembrane domain MetI-like NIY04_04920 IPR035906 MetI-like superfamily NIY04_04920 IPR005667 Sulphate ABC transporter permease protein 2 NIY04_04930 IPR000957 Sulphate/thiosulphate-binding, conserved site NIY04_04930 IPR005669 Thiosulphate/Sulfate-binding protein NIY04_04930 IPR034408 Sulphate/thiosulphate-binding site NIY04_04935 IPR017824 Aminodeoxychorismate lyase, class IV NIY04_04935 IPR001544 Aminotransferase class IV NIY04_04935 IPR018300 Aminotransferase, class IV, conserved site NIY04_04935 IPR036038 Aminotransferase-like, PLP-dependent enzymes NIY04_04940 IPR003770 Endolytic murein transglycosylase NIY04_04945 IPR039430 Thymidylate kinase-like domain NIY04_04945 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIY04_04945 IPR018094 Thymidylate kinase NIY04_04955 IPR027477 Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain superfamily NIY04_04955 IPR005288 L-aspartate oxidase NIY04_04955 IPR003953 FAD-dependent oxidoreductase 2, FAD binding domain NIY04_04955 IPR037099 Fumarate reductase/succinate dehydrogenase flavoprotein-like, C-terminal domain superfamily NIY04_04955 IPR036188 FAD/NAD(P)-binding domain superfamily NIY04_04955 IPR015939 Fumarate reductase/succinate dehydrogenase flavoprotein-like, C-terminal NIY04_04960 IPR001478 PDZ domain NIY04_04960 IPR036034 PDZ superfamily NIY04_04960 IPR011782 Peptidase S1C, Do NIY04_04960 IPR001940 Peptidase S1C NIY04_04960 IPR009003 Peptidase S1, PA clan NIY04_04970 IPR016181 Acyl-CoA N-acyltransferase NIY04_04970 IPR000182 GNAT domain NIY04_04975 IPR006297 Elongation factor 4 NIY04_04975 IPR035647 EF-G domain III/V-like NIY04_04975 IPR000640 Elongation factor EFG, domain V-like NIY04_04975 IPR004161 Translation elongation factor EFTu-like, domain 2 NIY04_04975 IPR031157 Tr-type G domain, conserved site NIY04_04975 IPR013842 GTP-binding protein LepA, C-terminal NIY04_04975 IPR038363 LepA, C-terminal domain superfamily NIY04_04975 IPR000795 Transcription factor, GTP-binding domain NIY04_04975 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIY04_04975 IPR035654 Elongation factor 4, domain IV NIY04_04975 IPR005225 Small GTP-binding protein domain NIY04_04980 IPR019533 Peptidase S26 NIY04_04980 IPR019756 Peptidase S26A, signal peptidase I, serine active site NIY04_04980 IPR036286 LexA/Signal peptidase-like superfamily NIY04_04980 IPR019758 Peptidase S26A, signal peptidase I, conserved site NIY04_04980 IPR000223 Peptidase S26A, signal peptidase I NIY04_04980 IPR019757 Peptidase S26A, signal peptidase I, lysine active site NIY04_04990 IPR014720 Double-stranded RNA-binding domain NIY04_04990 IPR011907 Ribonuclease III NIY04_04990 IPR000999 Ribonuclease III domain NIY04_04990 IPR036389 Ribonuclease III, endonuclease domain superfamily NIY04_04995 IPR030388 Era-type guanine nucleotide-binding (G) domain NIY04_04995 IPR005662 GTP-binding protein Era NIY04_04995 IPR006073 GTP binding domain NIY04_04995 IPR015946 K homology domain-like, alpha/beta NIY04_04995 IPR004044 K Homology domain, type 2 NIY04_04995 IPR009019 K homology domain superfamily, prokaryotic type NIY04_04995 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIY04_04995 IPR005225 Small GTP-binding protein domain NIY04_05005 IPR003717 Recombination protein O, RecO NIY04_05005 IPR022572 DNA replication/recombination mediator RecO, N-terminal NIY04_05005 IPR012340 Nucleic acid-binding, OB-fold NIY04_05005 IPR037278 ARFGAP/RecO-like zinc finger NIY04_05010 IPR036130 Pyridoxine 5'-phosphate synthase NIY04_05010 IPR013785 Aldolase-type TIM barrel NIY04_05010 IPR004569 Pyridoxal phosphate (active vitamin B6) biosynthesis PdxJ NIY04_05015 IPR012347 Ferritin-like NIY04_05015 IPR009078 Ferritin-like superfamily NIY04_05015 IPR010386 tRNA-hydroxylase MiaE NIY04_05020 IPR036291 NAD(P)-binding domain superfamily NIY04_05020 IPR002347 Short-chain dehydrogenase/reductase SDR NIY04_05020 IPR020904 Short-chain dehydrogenase/reductase, conserved site NIY04_05050 IPR018181 Heat shock protein 70, conserved site NIY04_05050 IPR042030 Chaperone protein HscC, nucleotide-binding domain NIY04_05050 IPR029047 Heat shock protein 70kD, peptide-binding domain superfamily NIY04_05050 IPR013126 Heat shock protein 70 family NIY04_05060 IPR015421 Pyridoxal phosphate-dependent transferase, major domain NIY04_05060 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 NIY04_05060 IPR004838 Aminotransferases, class-I, pyridoxal-phosphate-binding site NIY04_05060 IPR004839 Aminotransferase, class I/classII NIY04_05060 IPR015424 Pyridoxal phosphate-dependent transferase NIY04_05070 IPR033416 Periplasmic sensor domain CHASE7 NIY04_05070 IPR029787 Nucleotide cyclase NIY04_05070 IPR000160 GGDEF domain NIY04_05080 IPR006935 Helicase/UvrB, N-terminal NIY04_05080 IPR014001 Helicase superfamily 1/2, ATP-binding domain NIY04_05080 IPR001650 Helicase, C-terminal NIY04_05080 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIY04_05080 IPR001943 UVR domain NIY04_05080 IPR036876 UVR domain superfamily NIY04_05080 IPR004807 UvrABC system, subunit B NIY04_05080 IPR041471 UvrB, interaction domain NIY04_05080 IPR024759 UvrB, YAD/RRR-motif-containing domain NIY04_05090 IPR000620 EamA domain NIY04_05090 IPR004626 RarD protein NIY04_05095 IPR006424 Glyceraldehyde-3-phosphate dehydrogenase, type I NIY04_05095 IPR036291 NAD(P)-binding domain superfamily NIY04_05095 IPR020829 Glyceraldehyde 3-phosphate dehydrogenase, catalytic domain NIY04_05095 IPR020830 Glyceraldehyde 3-phosphate dehydrogenase, active site NIY04_05095 IPR020828 Glyceraldehyde 3-phosphate dehydrogenase, NAD(P) binding domain NIY04_05095 IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family NIY04_05110 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIY04_05110 IPR006073 GTP binding domain NIY04_05110 IPR036726 GTP1/OBG domain superfamily NIY04_05110 IPR035101 GTP-binding protein, Obg-type NIY04_05110 IPR006074 GTP1/OBG, conserved site NIY04_05110 IPR014100 GTP-binding protein Obg/CgtA NIY04_05110 IPR031167 OBG-type guanine nucleotide-binding (G) domain NIY04_05110 IPR006169 GTP1/OBG domain NIY04_05115 IPR036393 Acetylglutamate kinase-like superfamily NIY04_05115 IPR041739 Glutamate-5-kinase domain NIY04_05115 IPR001057 Glutamate/acetylglutamate kinase NIY04_05115 IPR011529 Glutamate 5-kinase NIY04_05115 IPR005715 Glutamate 5-kinase/delta-1-pyrroline-5-carboxylate synthase NIY04_05115 IPR019797 Glutamate 5-kinase, conserved site NIY04_05115 IPR002478 PUA domain NIY04_05115 IPR015947 PUA-like superfamily NIY04_05115 IPR036974 PUA domain superfamily NIY04_05115 IPR001048 Aspartate/glutamate/uridylate kinase NIY04_05125 IPR011673 Protein of unknown function DUF1615 NIY04_05130 IPR004652 tRNA-dihydrouridine synthase, TIM-barrel, NifR3 NIY04_05130 IPR018517 tRNA-dihydrouridine synthase, conserved site NIY04_05130 IPR013785 Aldolase-type TIM barrel NIY04_05130 IPR035587 DUS-like, FMN-binding domain NIY04_05130 IPR024036 tRNA-dihydrouridine synthase, putative, C-terminal NIY04_05130 IPR001269 tRNA-dihydrouridine synthase NIY04_05130 IPR032887 tRNA-dihydrouridine synthase B NIY04_05135 IPR004136 Nitronate monooxygenase NIY04_05135 IPR013785 Aldolase-type TIM barrel NIY04_05165 IPR029044 Nucleotide-diphospho-sugar transferases NIY04_05180 IPR006050 DNA photolyase, N-terminal NIY04_05180 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold NIY04_05180 IPR018394 Cryptochrome/DNA photolyase class 1, conserved site, C-terminal NIY04_05180 IPR002081 Cryptochrome/DNA photolyase class 1 NIY04_05180 IPR005101 Cryptochrome/DNA photolyase, FAD-binding domain NIY04_05180 IPR036155 Cryptochrome/photolyase, N-terminal domain superfamily NIY04_05180 IPR036134 Cryptochrome/DNA photolyase, FAD-binding domain-like superfamily NIY04_05185 IPR001179 FKBP-type peptidyl-prolyl cis-trans isomerase domain NIY04_05190 IPR036188 FAD/NAD(P)-binding domain superfamily NIY04_05190 IPR023753 FAD/NAD(P)-binding domain NIY04_05195 IPR012338 Beta-lactamase/transpeptidase-like NIY04_05195 IPR001967 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A, N-terminal NIY04_05195 IPR015956 Penicillin-binding protein, C-terminal domain superfamily NIY04_05195 IPR012907 Peptidase S11, D-Ala-D-Ala carboxypeptidase A, C-terminal NIY04_05195 IPR018044 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A NIY04_05195 IPR037167 D-Ala-D-Ala carboxypeptidase, C-terminal domain superfamily NIY04_05205 IPR004436 Isocitrate dehydrogenase NADP-dependent, monomeric NIY04_05210 IPR000748 Pseudouridine synthase, RsuA/RluB/E/F NIY04_05210 IPR042092 Pseudouridine synthase, RsuA/RluB/E/F, catalytic domain NIY04_05210 IPR020103 Pseudouridine synthase, catalytic domain superfamily NIY04_05210 IPR018496 Pseudouridine synthase, RsuA/RluB/E/F, conserved site NIY04_05210 IPR006145 Pseudouridine synthase, RsuA/RluA NIY04_05215 IPR019818 Isocitrate/isopropylmalate dehydrogenase, conserved site NIY04_05215 IPR004439 Isocitrate dehydrogenase NADP-dependent, dimeric, prokaryotic NIY04_05215 IPR024084 Isopropylmalate dehydrogenase-like domain NIY04_05235 IPR010645 Uncharacterised MFS-type transporter YbfB NIY04_05235 IPR036259 MFS transporter superfamily NIY04_05240 IPR000847 Transcription regulator HTH, LysR NIY04_05240 IPR036388 Winged helix-like DNA-binding domain superfamily NIY04_05240 IPR036390 Winged helix DNA-binding domain superfamily NIY04_05240 IPR005119 LysR, substrate-binding NIY04_05245 IPR001991 Sodium:dicarboxylate symporter NIY04_05245 IPR036458 Sodium:dicarboxylate symporter superfamily NIY04_05250 IPR003719 Phenazine biosynthesis PhzF protein NIY04_05255 IPR001431 Peptidase M16, zinc-binding site NIY04_05255 IPR011765 Peptidase M16, N-terminal NIY04_05255 IPR007863 Peptidase M16, C-terminal NIY04_05255 IPR011249 Metalloenzyme, LuxS/M16 peptidase-like NIY04_05280 IPR013785 Aldolase-type TIM barrel NIY04_05280 IPR036206 Thiamin phosphate synthase superfamily NIY04_05280 IPR022998 Thiamine phosphate synthase/TenI NIY04_05280 IPR034291 Thiamine phosphate synthase NIY04_05285 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 NIY04_05285 IPR015424 Pyridoxal phosphate-dependent transferase NIY04_05285 IPR005814 Aminotransferase class-III NIY04_05285 IPR015421 Pyridoxal phosphate-dependent transferase, major domain NIY04_05285 IPR004639 Tetrapyrrole biosynthesis, glutamate-1-semialdehyde aminotransferase NIY04_05295 IPR020103 Pseudouridine synthase, catalytic domain superfamily NIY04_05295 IPR006224 Pseudouridine synthase, RluC/RluD, conserved site NIY04_05295 IPR006145 Pseudouridine synthase, RsuA/RluA NIY04_05300 IPR038718 SNF2-like, N-terminal domain superfamily NIY04_05300 IPR040766 RapA, N-terminal Tudor-like domain 2 NIY04_05300 IPR000330 SNF2-related, N-terminal domain NIY04_05300 IPR022737 RNA polymerase recycling, bacterial, C-terminal NIY04_05300 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIY04_05300 IPR040765 RapA, N-terminal Tudor like domain 1 NIY04_05300 IPR001650 Helicase, C-terminal NIY04_05300 IPR014001 Helicase superfamily 1/2, ATP-binding domain NIY04_05300 IPR023949 RNA polymerase-associated protein RapA NIY04_05310 IPR023764 Transcriptional repressor HTH, FabR NIY04_05310 IPR001647 DNA-binding HTH domain, TetR-type NIY04_05310 IPR009057 Homeobox-like domain superfamily NIY04_05315 IPR036010 2Fe-2S ferredoxin-like superfamily NIY04_05315 IPR012675 Beta-grasp domain superfamily NIY04_05315 IPR008333 Flavoprotein pyridine nucleotide cytochrome reductase-like, FAD-binding domain NIY04_05315 IPR017927 FAD-binding domain, ferredoxin reductase-type NIY04_05315 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain NIY04_05315 IPR001433 Oxidoreductase FAD/NAD(P)-binding NIY04_05315 IPR017938 Riboflavin synthase-like beta-barrel NIY04_05315 IPR000951 Phthalate dioxygenase reductase NIY04_05315 IPR039261 Ferredoxin-NADP reductase (FNR), nucleotide-binding domain NIY04_05320 IPR005804 Fatty acid desaturase domain NIY04_05325 IPR029039 Flavoprotein-like superfamily NIY04_05325 IPR003680 Flavodoxin-like fold NIY04_05340 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 NIY04_05340 IPR015424 Pyridoxal phosphate-dependent transferase NIY04_05340 IPR004637 2,4-diaminobutyrate 4-transaminase NIY04_05340 IPR015421 Pyridoxal phosphate-dependent transferase, major domain NIY04_05340 IPR005814 Aminotransferase class-III NIY04_05345 IPR015421 Pyridoxal phosphate-dependent transferase, major domain NIY04_05345 IPR015424 Pyridoxal phosphate-dependent transferase NIY04_05345 IPR002129 Pyridoxal phosphate-dependent decarboxylase NIY04_05345 IPR021115 Pyridoxal-phosphate binding site NIY04_05350 IPR016162 Aldehyde dehydrogenase, N-terminal NIY04_05350 IPR029510 Aldehyde dehydrogenase, glutamic acid active site NIY04_05350 IPR016160 Aldehyde dehydrogenase, cysteine active site NIY04_05350 IPR016163 Aldehyde dehydrogenase, C-terminal NIY04_05350 IPR016161 Aldehyde/histidinol dehydrogenase NIY04_05350 IPR015590 Aldehyde dehydrogenase domain NIY04_05355 IPR019888 Transcription regulator AsnC-type NIY04_05355 IPR011008 Dimeric alpha-beta barrel NIY04_05355 IPR000485 AsnC-type HTH domain NIY04_05355 IPR011991 ArsR-like helix-turn-helix domain NIY04_05355 IPR036390 Winged helix DNA-binding domain superfamily NIY04_05355 IPR019885 Transcription regulator HTH, AsnC-type, conserved site NIY04_05355 IPR036388 Winged helix-like DNA-binding domain superfamily NIY04_05355 IPR019887 Transcription regulator AsnC/Lrp, ligand binding domain NIY04_05360 IPR012110 Thiamine pyrophosphate (TPP)-dependent enzyme NIY04_05360 IPR012000 Thiamine pyrophosphate enzyme, central domain NIY04_05360 IPR012001 Thiamine pyrophosphate enzyme, N-terminal TPP-binding domain NIY04_05360 IPR011766 Thiamine pyrophosphate enzyme, C-terminal TPP-binding NIY04_05360 IPR029061 Thiamin diphosphate-binding fold NIY04_05360 IPR029035 DHS-like NAD/FAD-binding domain superfamily NIY04_05365 IPR004840 Amino acid permease, conserved site NIY04_05365 IPR004841 Amino acid permease/ SLC12A domain NIY04_05370 IPR024370 PBP domain NIY04_05370 IPR011862 Phosphate binding protein NIY04_05375 IPR000515 ABC transporter type 1, transmembrane domain MetI-like NIY04_05375 IPR035906 MetI-like superfamily NIY04_05375 IPR011864 Phosphate ABC transporter, permease protein PstC NIY04_05380 IPR000515 ABC transporter type 1, transmembrane domain MetI-like NIY04_05380 IPR035906 MetI-like superfamily NIY04_05380 IPR005672 Phosphate transport system permease protein PstA NIY04_05385 IPR005670 Phosphate transport system permease protein 1 NIY04_05385 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIY04_05385 IPR015850 ABC transporter, phosphate import, PstB NIY04_05385 IPR017871 ABC transporter, conserved site NIY04_05385 IPR003439 ABC transporter-like NIY04_05385 IPR003593 AAA+ ATPase domain NIY04_05390 IPR029045 ClpP/crotonase-like domain superfamily NIY04_05390 IPR002142 Peptidase S49 NIY04_05390 IPR013703 Peptidase S49, N-terminal proteobacteria NIY04_05405 IPR004769 Adenylosuccinate lyase NIY04_05405 IPR008948 L-Aspartase-like NIY04_05405 IPR000362 Fumarate lyase family NIY04_05405 IPR020557 Fumarate lyase, conserved site NIY04_05405 IPR024083 Fumarase/histidase, N-terminal NIY04_05405 IPR013539 Adenylosuccinate lyase PurB, C-terminal NIY04_05405 IPR022761 Fumarate lyase, N-terminal NIY04_05410 IPR007451 High frequency lysogenization protein HflD NIY04_05410 IPR035932 HflD-like superfamily NIY04_05415 IPR023382 Adenine nucleotide alpha hydrolase-like domains NIY04_05415 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold NIY04_05415 IPR004506 tRNA-specific 2-thiouridylase NIY04_05425 IPR001451 Hexapeptide repeat NIY04_05425 IPR011004 Trimeric LpxA-like superfamily NIY04_05430 IPR015956 Penicillin-binding protein, C-terminal domain superfamily NIY04_05430 IPR018044 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A NIY04_05430 IPR012907 Peptidase S11, D-Ala-D-Ala carboxypeptidase A, C-terminal NIY04_05430 IPR037167 D-Ala-D-Ala carboxypeptidase, C-terminal domain superfamily NIY04_05430 IPR012338 Beta-lactamase/transpeptidase-like NIY04_05430 IPR001967 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A, N-terminal NIY04_05445 IPR036523 SurE-like phosphatase/nucleotidase superfamily NIY04_05445 IPR002828 Survival protein SurE-like phosphatase/nucleotidase NIY04_05445 IPR030048 Survival protein SurE NIY04_05450 IPR016047 Peptidase M23 NIY04_05450 IPR036779 LysM domain superfamily NIY04_05450 IPR018392 LysM domain NIY04_05450 IPR011055 Duplicated hybrid motif NIY04_05455 IPR036390 Winged helix DNA-binding domain superfamily NIY04_05455 IPR036388 Winged helix-like DNA-binding domain superfamily NIY04_05455 IPR005119 LysR, substrate-binding NIY04_05455 IPR000847 Transcription regulator HTH, LysR NIY04_05460 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup NIY04_05460 IPR020568 Ribosomal protein S5 domain 2-type fold NIY04_05460 IPR027065 Lon protease NIY04_05460 IPR008269 Peptidase S16, Lon proteolytic domain NIY04_05460 IPR041699 Lon protease, AAA domain NIY04_05465 IPR011701 Major facilitator superfamily NIY04_05465 IPR004752 AmpG-like permease/Acetyl-coenzyme A transporter 1 NIY04_05465 IPR020846 Major facilitator superfamily domain NIY04_05465 IPR036259 MFS transporter superfamily NIY04_05470 IPR037523 Vicinal oxygen chelate (VOC) domain NIY04_05470 IPR004361 Glyoxalase I NIY04_05470 IPR004360 Glyoxalase/fosfomycin resistance/dioxygenase domain NIY04_05470 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase NIY04_05470 IPR018146 Glyoxalase I, conserved site NIY04_05475 IPR038770 Sodium/solute symporter superfamily NIY04_05475 IPR016833 Putative sodium bile acid cotransporter NIY04_05480 IPR034704 L28p-like NIY04_05480 IPR002150 Ribosomal protein L31 NIY04_05480 IPR027491 Ribosomal protein L31 type A NIY04_05480 IPR042105 Ribosomal protein L31 superfamily NIY04_05485 IPR024744 Putative cyclic diguanylate phosphodiesterase, CSS motif-containing domain NIY04_05485 IPR001633 EAL domain NIY04_05485 IPR035919 EAL domain superfamily NIY04_05495 IPR022462 Lysine-2,3-aminomutase-like NIY04_05495 IPR003739 Lysine-2,3-aminomutase/glutamate 2,3-aminomutase NIY04_05495 IPR007197 Radical SAM NIY04_05495 IPR013785 Aldolase-type TIM barrel NIY04_05500 IPR008991 Translation protein SH3-like domain superfamily NIY04_05500 IPR011768 Translation elongation factor P NIY04_05500 IPR020599 Translation elongation factor P/YeiP NIY04_05500 IPR013185 Translation elongation factor, KOW-like NIY04_05500 IPR012340 Nucleic acid-binding, OB-fold NIY04_05500 IPR015365 Elongation factor P, C-terminal NIY04_05500 IPR014722 Ribosomal protein L2, domain 2 NIY04_05500 IPR001059 Translation elongation factor P/YeiP, central NIY04_05505 IPR025299 CstA, C-terminal domain NIY04_05505 IPR003706 CstA, N-terminal domain NIY04_05510 IPR007423 Selenoprotein, putative NIY04_05545 IPR002347 Short-chain dehydrogenase/reductase SDR NIY04_05545 IPR036291 NAD(P)-binding domain superfamily NIY04_05565 IPR036380 Isochorismatase-like superfamily NIY04_05565 IPR000868 Isochorismatase-like NIY04_05570 IPR036390 Winged helix DNA-binding domain superfamily NIY04_05570 IPR036388 Winged helix-like DNA-binding domain superfamily NIY04_05570 IPR000847 Transcription regulator HTH, LysR NIY04_05570 IPR005119 LysR, substrate-binding NIY04_05580 IPR020946 Flavin monooxygenase-like NIY04_05580 IPR036188 FAD/NAD(P)-binding domain superfamily NIY04_05585 IPR029058 Alpha/Beta hydrolase fold NIY04_05585 IPR000073 Alpha/beta hydrolase fold-1 NIY04_05585 IPR000639 Epoxide hydrolase-like NIY04_05595 IPR036291 NAD(P)-binding domain superfamily NIY04_05595 IPR017829 Hopanoid-associated sugar epimerase NIY04_05595 IPR001509 NAD-dependent epimerase/dehydratase NIY04_05600 IPR020449 Transcription regulator HTH, AraC- type NIY04_05600 IPR018060 DNA binding HTH domain, AraC-type NIY04_05600 IPR009057 Homeobox-like domain superfamily NIY04_05600 IPR032687 HTH-type transcriptional regulator AraC-type, N-terminal NIY04_05640 IPR011051 RmlC-like cupin domain superfamily NIY04_05640 IPR014710 RmlC-like jelly roll fold NIY04_05640 IPR041602 Quercetin 2,3-dioxygenase, C-terminal cupin domain NIY04_05640 IPR003829 Pirin, N-terminal domain NIY04_05640 IPR012093 Pirin NIY04_05645 IPR036052 Tryptophan synthase beta subunit-like PLP-dependent enzyme NIY04_05645 IPR000634 Serine/threonine dehydratase, pyridoxal-phosphate-binding site NIY04_05645 IPR001926 Pyridoxal-phosphate dependent enzyme NIY04_05650 IPR013559 YheO-like NIY04_05650 IPR039445 Transcriptional regulator DauR-like, HTH domain NIY04_05650 IPR039446 Transcriptional regulator DauR-like NIY04_05660 IPR025110 AMP-binding enzyme, C-terminal domain NIY04_05660 IPR020845 AMP-binding, conserved site NIY04_05660 IPR000873 AMP-dependent synthetase/ligase NIY04_05660 IPR042099 AMP-dependent synthetase-like superfamily NIY04_05660 IPR023213 Chloramphenicol acetyltransferase-like domain superfamily NIY04_05660 IPR001242 Condensation domain NIY04_05660 IPR010060 Non-ribosomal peptide synthase NIY04_05660 IPR020806 Polyketide synthase, phosphopantetheine-binding domain NIY04_05660 IPR009081 Phosphopantetheine binding ACP domain NIY04_05660 IPR006162 Phosphopantetheine attachment site NIY04_05660 IPR036736 ACP-like superfamily NIY04_05660 IPR010071 Amino acid adenylation domain NIY04_05665 IPR036736 ACP-like superfamily NIY04_05665 IPR009081 Phosphopantetheine binding ACP domain NIY04_05665 IPR023213 Chloramphenicol acetyltransferase-like domain superfamily NIY04_05665 IPR001242 Condensation domain NIY04_05665 IPR020806 Polyketide synthase, phosphopantetheine-binding domain NIY04_05665 IPR010071 Amino acid adenylation domain NIY04_05665 IPR020802 Polyketide synthase, thioesterase domain NIY04_05665 IPR042099 AMP-dependent synthetase-like superfamily NIY04_05665 IPR000873 AMP-dependent synthetase/ligase NIY04_05665 IPR020845 AMP-binding, conserved site NIY04_05665 IPR025110 AMP-binding enzyme, C-terminal domain NIY04_05665 IPR029058 Alpha/Beta hydrolase fold NIY04_05665 IPR001031 Thioesterase NIY04_05670 IPR037294 ABC transporter, BtuC-like NIY04_05670 IPR000522 ABC transporter, permease protein, BtuC-like NIY04_05675 IPR000522 ABC transporter, permease protein, BtuC-like NIY04_05675 IPR037294 ABC transporter, BtuC-like NIY04_05680 IPR003593 AAA+ ATPase domain NIY04_05680 IPR003439 ABC transporter-like NIY04_05680 IPR017871 ABC transporter, conserved site NIY04_05680 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIY04_05685 IPR002491 ABC transporter periplasmic binding domain NIY04_05685 IPR033870 FatB domain NIY04_05690 IPR039423 TonB-dependent receptor-like NIY04_05690 IPR000531 TonB-dependent receptor-like, beta-barrel NIY04_05690 IPR010916 TonB box, conserved site NIY04_05690 IPR036942 TonB-dependent receptor-like, beta-barrel domain superfamily NIY04_05690 IPR030149 TonB-dependent siderophore receptor FcuA/FatA NIY04_05690 IPR010105 TonB-dependent siderophore receptor NIY04_05690 IPR037066 TonB-dependent receptor, plug domain superfamily NIY04_05690 IPR010917 TonB-dependent receptor, conserved site NIY04_05690 IPR012910 TonB-dependent receptor, plug domain NIY04_05695 IPR031043 Putative histamine N-monooxygenase NIY04_05695 IPR036188 FAD/NAD(P)-binding domain superfamily NIY04_05695 IPR025700 L-lysine 6-monooxygenase/L-ornithine 5-monooxygenase NIY04_05700 IPR020845 AMP-binding, conserved site NIY04_05700 IPR006162 Phosphopantetheine attachment site NIY04_05700 IPR009081 Phosphopantetheine binding ACP domain NIY04_05700 IPR020806 Polyketide synthase, phosphopantetheine-binding domain NIY04_05700 IPR001242 Condensation domain NIY04_05700 IPR023213 Chloramphenicol acetyltransferase-like domain superfamily NIY04_05700 IPR042099 AMP-dependent synthetase-like superfamily NIY04_05700 IPR000873 AMP-dependent synthetase/ligase NIY04_05700 IPR036736 ACP-like superfamily NIY04_05700 IPR029058 Alpha/Beta hydrolase fold NIY04_05700 IPR010071 Amino acid adenylation domain NIY04_05705 IPR025110 AMP-binding enzyme, C-terminal domain NIY04_05705 IPR000873 AMP-dependent synthetase/ligase NIY04_05705 IPR042099 AMP-dependent synthetase-like superfamily NIY04_05705 IPR011963 2,3-dihydroxybenzoate-AMP ligase NIY04_05705 IPR020845 AMP-binding, conserved site NIY04_05710 IPR016291 Isochorismatase NIY04_05710 IPR009081 Phosphopantetheine binding ACP domain NIY04_05710 IPR036380 Isochorismatase-like superfamily NIY04_05710 IPR036736 ACP-like superfamily NIY04_05710 IPR000868 Isochorismatase-like NIY04_05715 IPR002129 Pyridoxal phosphate-dependent decarboxylase NIY04_05715 IPR023523 Histidine decarboxylase, bacteria NIY04_05715 IPR015424 Pyridoxal phosphate-dependent transferase NIY04_05715 IPR021115 Pyridoxal-phosphate binding site NIY04_05715 IPR015421 Pyridoxal phosphate-dependent transferase, major domain NIY04_05720 IPR036640 ABC transporter type 1, transmembrane domain superfamily NIY04_05720 IPR011527 ABC transporter type 1, transmembrane domain NIY04_05720 IPR014223 ABC transporter, CydDC cysteine exporter (CydDC-E) family, permease/ATP-binding protein CydC NIY04_05720 IPR003593 AAA+ ATPase domain NIY04_05720 IPR003439 ABC transporter-like NIY04_05720 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIY04_05725 IPR017871 ABC transporter, conserved site NIY04_05725 IPR003439 ABC transporter-like NIY04_05725 IPR036640 ABC transporter type 1, transmembrane domain superfamily NIY04_05725 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIY04_05725 IPR003593 AAA+ ATPase domain NIY04_05725 IPR011527 ABC transporter type 1, transmembrane domain NIY04_05730 IPR001031 Thioesterase NIY04_05730 IPR012223 Thioesterase type II, NRPS/PKS/S-FAS NIY04_05730 IPR029058 Alpha/Beta hydrolase fold NIY04_05740 IPR005801 ADC synthase NIY04_05740 IPR015890 Chorismate-utilising enzyme, C-terminal NIY04_05740 IPR004561 Isochorismate synthase NIY04_05750 IPR000257 Uroporphyrinogen decarboxylase (URO-D) NIY04_05750 IPR038071 UROD/MetE-like superfamily NIY04_05750 IPR006361 Uroporphyrinogen decarboxylase HemE NIY04_05755 IPR008535 Protein of unknown function DUF817 NIY04_05770 IPR001466 Beta-lactamase-related NIY04_05770 IPR012338 Beta-lactamase/transpeptidase-like NIY04_05770 IPR001586 Beta-lactamase, class-C active site NIY04_05775 IPR001474 GTP cyclohydrolase I NIY04_05775 IPR018234 GTP cyclohydrolase I, conserved site NIY04_05775 IPR020602 GTP cyclohydrolase I domain NIY04_05780 IPR012675 Beta-grasp domain superfamily NIY04_05780 IPR006058 2Fe-2S ferredoxin, iron-sulphur binding site NIY04_05780 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain NIY04_05780 IPR036010 2Fe-2S ferredoxin-like superfamily NIY04_05780 IPR036884 [2Fe-2S]-binding domain superfamily NIY04_05780 IPR002888 [2Fe-2S]-binding NIY04_05785 IPR000674 Aldehyde oxidase/xanthine dehydrogenase, a/b hammerhead NIY04_05785 IPR036856 Aldehyde oxidase/xanthine dehydrogenase, a/b hammerhead superfamily NIY04_05785 IPR008274 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding NIY04_05785 IPR037165 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding domain superfamily NIY04_05800 IPR001468 Indole-3-glycerol phosphate synthase, conserved site NIY04_05800 IPR011060 Ribulose-phosphate binding barrel NIY04_05800 IPR013785 Aldolase-type TIM barrel NIY04_05800 IPR013798 Indole-3-glycerol phosphate synthase NIY04_05805 IPR005940 Anthranilate phosphoribosyl transferase NIY04_05805 IPR000312 Glycosyl transferase, family 3 NIY04_05805 IPR017459 Glycosyl transferase family 3, N-terminal domain NIY04_05805 IPR036320 Glycosyl transferase family 3, N-terminal domain superfamily NIY04_05805 IPR035902 Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain superfamily NIY04_05810 IPR036942 TonB-dependent receptor-like, beta-barrel domain superfamily NIY04_05810 IPR010917 TonB-dependent receptor, conserved site NIY04_05810 IPR010916 TonB box, conserved site NIY04_05810 IPR000531 TonB-dependent receptor-like, beta-barrel NIY04_05810 IPR037066 TonB-dependent receptor, plug domain superfamily NIY04_05810 IPR012910 TonB-dependent receptor, plug domain NIY04_05810 IPR039426 Vitamin B12 transporter BtuB-like NIY04_05810 IPR010101 TonB-dependent vitamin B12 transporter BtuB NIY04_05815 IPR042097 Aminopeptidase N-like , N-terminal NIY04_05815 IPR024571 ERAP1-like C-terminal domain NIY04_05815 IPR034016 Aminopeptidase N-type NIY04_05815 IPR001930 Peptidase M1, alanine aminopeptidase/leukotriene A4 hydrolase NIY04_05815 IPR014782 Peptidase M1, membrane alanine aminopeptidase NIY04_05820 IPR006221 Anthranilate synthase/para-aminobenzoate synthase like domain NIY04_05820 IPR017926 Glutamine amidotransferase NIY04_05820 IPR029062 Class I glutamine amidotransferase-like NIY04_05830 IPR005279 Dipeptide/tripeptide permease NIY04_05830 IPR020846 Major facilitator superfamily domain NIY04_05830 IPR036259 MFS transporter superfamily NIY04_05830 IPR000109 Proton-dependent oligopeptide transporter family NIY04_05830 IPR018456 PTR2 family proton/oligopeptide symporter, conserved site NIY04_05835 IPR027302 Glutamine synthetase, N-terminal conserved site NIY04_05835 IPR001637 Glutamine synthetase class-I, adenylation site NIY04_05835 IPR004809 Glutamine synthetase type I NIY04_05835 IPR036651 Glutamine synthetase, N-terminal domain superfamily NIY04_05835 IPR008146 Glutamine synthetase, catalytic domain NIY04_05835 IPR014746 Glutamine synthetase/guanido kinase, catalytic domain NIY04_05835 IPR008147 Glutamine synthetase, beta-Grasp domain NIY04_05835 IPR027303 Glutamine synthetase, glycine-rich site NIY04_05840 IPR007440 Chorismate--pyruvate lyase NIY04_05840 IPR028978 Chorismate pyruvate-lyase/UbiC transcription regulator-associated domain superfamily NIY04_05845 IPR006370 4-hydroxybenzoate polyprenyltransferase-like NIY04_05845 IPR039653 Prenyltransferase NIY04_05845 IPR000537 UbiA prenyltransferase family NIY04_05880 IPR036314 Manganese/iron superoxide dismutase, C-terminal domain superfamily NIY04_05880 IPR036324 Manganese/iron superoxide dismutase, N-terminal domain superfamily NIY04_05880 IPR019833 Manganese/iron superoxide dismutase, binding site NIY04_05880 IPR019832 Manganese/iron superoxide dismutase, C-terminal NIY04_05880 IPR001189 Manganese/iron superoxide dismutase NIY04_05880 IPR019831 Manganese/iron superoxide dismutase, N-terminal NIY04_05885 IPR002678 GTP cyclohydrolase 1 type 2/Nif3 NIY04_05885 IPR036069 GTP cyclohydrolase 1 type 2/Nif3 superfamily NIY04_05890 IPR001940 Peptidase S1C NIY04_05890 IPR009003 Peptidase S1, PA clan NIY04_05890 IPR001478 PDZ domain NIY04_05890 IPR036034 PDZ superfamily NIY04_05890 IPR011782 Peptidase S1C, Do NIY04_05895 IPR012006 tRNA nucleotidyltransferase, proteobacteria NIY04_05895 IPR003607 HD/PDEase domain NIY04_05895 IPR002646 Poly A polymerase, head domain NIY04_05895 IPR032828 tRNA nucleotidyltransferase/poly(A) polymerase, RNA and SrmB- binding domain NIY04_05900 IPR042112 Phosphate acetyltransferase, domain 2 NIY04_05900 IPR015884 Malic enzyme, conserved site NIY04_05900 IPR012301 Malic enzyme, N-terminal domain NIY04_05900 IPR037062 Malic enzyme, N-terminal domain superfamily NIY04_05900 IPR012302 Malic enzyme, NAD-binding NIY04_05900 IPR012188 NAD(P)-dependent malic enzyme NIY04_05900 IPR036291 NAD(P)-binding domain superfamily NIY04_05900 IPR002505 Phosphate acetyl/butaryl transferase NIY04_05900 IPR042113 Phosphate acetyltransferase, domain 1 NIY04_05905 IPR029787 Nucleotide cyclase NIY04_05905 IPR005330 MHYT domain NIY04_05905 IPR000160 GGDEF domain NIY04_05905 IPR035919 EAL domain superfamily NIY04_05905 IPR001633 EAL domain NIY04_05910 IPR015947 PUA-like superfamily NIY04_05910 IPR006700 Ribosomal RNA small subunit methyltransferase E NIY04_05910 IPR029026 tRNA (guanine-N1-)-methyltransferase, N-terminal NIY04_05910 IPR029028 Alpha/beta knot methyltransferases NIY04_05915 IPR029041 FAD-linked oxidoreductase-like NIY04_05915 IPR003171 Methylenetetrahydrofolate reductase NIY04_05915 IPR004620 5,10-methylenetetrahydrofolate reductase NIY04_05920 IPR020082 S-adenosyl-L-homocysteine hydrolase, conserved site NIY04_05920 IPR015878 S-adenosyl-L-homocysteine hydrolase, NAD binding domain NIY04_05920 IPR000043 Adenosylhomocysteinase-like NIY04_05920 IPR036291 NAD(P)-binding domain superfamily NIY04_05920 IPR042172 Adenosylhomocysteinase-like superfamily NIY04_05935 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal NIY04_05935 IPR037069 Acyl-CoA dehydrogenase/oxidase, N-terminal domain superfamily NIY04_05935 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily NIY04_05935 IPR015396 Acyl-CoA dehydrogenase, C-termina, bacterial type NIY04_05935 IPR036250 Acyl-CoA dehydrogenase-like, C-terminal NIY04_05935 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal NIY04_05940 IPR013785 Aldolase-type TIM barrel NIY04_05940 IPR006638 Elp3/MiaB/NifB NIY04_05940 IPR003698 Lipoyl synthase NIY04_05940 IPR007197 Radical SAM NIY04_05945 IPR022962 Soluble pyridine nucleotide transhydrogenase NIY04_05945 IPR004099 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain NIY04_05945 IPR016156 FAD/NAD-linked reductase, dimerisation domain superfamily NIY04_05945 IPR023753 FAD/NAD(P)-binding domain NIY04_05945 IPR036188 FAD/NAD(P)-binding domain superfamily NIY04_05945 IPR001100 Pyridine nucleotide-disulphide oxidoreductase, class I NIY04_05955 IPR011701 Major facilitator superfamily NIY04_05955 IPR020846 Major facilitator superfamily domain NIY04_05955 IPR036259 MFS transporter superfamily NIY04_05955 IPR004737 Nitrate transporter NIY04_05965 IPR036005 Creatinase/aminopeptidase-like NIY04_05965 IPR000994 Peptidase M24 NIY04_05965 IPR001714 Peptidase M24, methionine aminopeptidase NIY04_05965 IPR002467 Peptidase M24A, methionine aminopeptidase, subfamily 1 NIY04_05970 IPR023591 Ribosomal protein S2, flavodoxin-like domain superfamily NIY04_05970 IPR005706 Ribosomal protein S2, bacteria/mitochondria/plastid NIY04_05970 IPR001865 Ribosomal protein S2 NIY04_05970 IPR018130 Ribosomal protein S2, conserved site NIY04_05975 IPR009060 UBA-like superfamily NIY04_05975 IPR036402 Elongation factor Ts, dimerisation domain superfamily NIY04_05975 IPR014039 Translation elongation factor EFTs/EF1B, dimerisation NIY04_05975 IPR001816 Translation elongation factor EFTs/EF1B NIY04_05975 IPR018101 Translation elongation factor Ts, conserved site NIY04_05985 IPR009057 Homeobox-like domain superfamily NIY04_05985 IPR018060 DNA binding HTH domain, AraC-type NIY04_05985 IPR018062 HTH domain AraC-type, conserved site NIY04_05985 IPR011051 RmlC-like cupin domain superfamily NIY04_06005 IPR007730 Sporulation-like domain NIY04_06005 IPR012997 Rare lipoprotein A NIY04_06005 IPR034718 Endolytic peptidoglycan transglycosylase RlpA NIY04_06005 IPR036908 RlpA-like domain superfamily NIY04_06005 IPR009009 RlpA-like protein, double-psi beta-barrel domain NIY04_06010 IPR023346 Lysozyme-like domain superfamily NIY04_06010 IPR011757 Lytic transglycosylase MltB NIY04_06010 IPR031304 Transglycosylase SLT domain 2 NIY04_06015 IPR018365 Cell cycle, FtsW / RodA / SpoVE, conserved site NIY04_06015 IPR001182 Probable peptidoglycan glycosyltransferase FtsW/RodA NIY04_06015 IPR011923 Probable peptidoglycan glycosyltransferase RodA/MrdB NIY04_06025 IPR016428 NADPH-dependent 7-cyano-7-deazaguanine reductase, QueF type 2 NIY04_06025 IPR029500 NADPH-dependent 7-cyano-7-deazaguanine reductase QueF NIY04_06025 IPR029139 NADPH-dependent 7-cyano-7-deazaguanine reductase, N-terminal NIY04_06030 IPR013525 ABC-2 type transporter NIY04_06030 IPR000412 ABC-2 transporter NIY04_06035 IPR003593 AAA+ ATPase domain NIY04_06035 IPR003439 ABC transporter-like NIY04_06035 IPR017871 ABC transporter, conserved site NIY04_06035 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIY04_06065 IPR039429 Serine hydroxymethyltransferase-like domain NIY04_06065 IPR019798 Serine hydroxymethyltransferase, pyridoxal phosphate binding site NIY04_06065 IPR015424 Pyridoxal phosphate-dependent transferase NIY04_06065 IPR015421 Pyridoxal phosphate-dependent transferase, major domain NIY04_06065 IPR001085 Serine hydroxymethyltransferase NIY04_06065 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 NIY04_06070 IPR010131 RND efflux system, outer membrane lipoprotein, NodT NIY04_06070 IPR003423 Outer membrane efflux protein NIY04_06075 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains NIY04_06075 IPR001036 Acriflavin resistance protein NIY04_06075 IPR004764 Hydrophobe/amphiphile efflux-1 HAE1 NIY04_06080 IPR039562 Membrane fusion protein, biotin-lipoyl like domain NIY04_06080 IPR022824 Multidrug resistance protein MdtA NIY04_06080 IPR006143 RND efflux pump, membrane fusion protein NIY04_06085 IPR036390 Winged helix DNA-binding domain superfamily NIY04_06085 IPR005119 LysR, substrate-binding NIY04_06085 IPR036388 Winged helix-like DNA-binding domain superfamily NIY04_06085 IPR000847 Transcription regulator HTH, LysR NIY04_06090 IPR005768 Specific amino acids and opine-binding periplasmic protein, ABC transporter NIY04_06090 IPR018313 Solute-binding protein family 3, conserved site NIY04_06090 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF NIY04_06095 IPR010065 Amino acid ABC transporter, permease protein, 3-TM domain NIY04_06095 IPR030199 Histidine transport system permease protein HisQ NIY04_06095 IPR000515 ABC transporter type 1, transmembrane domain MetI-like NIY04_06095 IPR035906 MetI-like superfamily NIY04_06100 IPR000515 ABC transporter type 1, transmembrane domain MetI-like NIY04_06100 IPR035906 MetI-like superfamily NIY04_06100 IPR010065 Amino acid ABC transporter, permease protein, 3-TM domain NIY04_06105 IPR003593 AAA+ ATPase domain NIY04_06105 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIY04_06105 IPR003439 ABC transporter-like NIY04_06105 IPR017871 ABC transporter, conserved site NIY04_06105 IPR030679 ABC-type amino acid transport system, ATPase component, HisP-type NIY04_06110 IPR000390 Small multidrug resistance protein family NIY04_06115 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain NIY04_06115 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site NIY04_06120 IPR001539 Peptidase U32 NIY04_06120 IPR032525 Peptidase family U32, C-terminal NIY04_06125 IPR036390 Winged helix DNA-binding domain superfamily NIY04_06125 IPR000524 Transcription regulator HTH, GntR NIY04_06125 IPR036388 Winged helix-like DNA-binding domain superfamily NIY04_06125 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 NIY04_06125 IPR015424 Pyridoxal phosphate-dependent transferase NIY04_06125 IPR004839 Aminotransferase, class I/classII NIY04_06125 IPR015421 Pyridoxal phosphate-dependent transferase, major domain NIY04_06130 IPR003719 Phenazine biosynthesis PhzF protein NIY04_06135 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase NIY04_06135 IPR033892 Ferredoxin--NADP reductase, bacteria NIY04_06135 IPR039261 Ferredoxin-NADP reductase (FNR), nucleotide-binding domain NIY04_06135 IPR008333 Flavoprotein pyridine nucleotide cytochrome reductase-like, FAD-binding domain NIY04_06135 IPR017938 Riboflavin synthase-like beta-barrel NIY04_06135 IPR017927 FAD-binding domain, ferredoxin reductase-type NIY04_06135 IPR001433 Oxidoreductase FAD/NAD(P)-binding NIY04_06140 IPR023370 TrmO-like, N-terminal domain NIY04_06140 IPR041369 TrmO, C-terminal NIY04_06140 IPR023368 Uncharacterised protein family UPF0066, conserved site NIY04_06140 IPR040372 YaeB-like NIY04_06140 IPR036413 YaeB-like superfamily NIY04_06140 IPR036414 YaeB, N-terminal domain superfamily NIY04_06150 IPR001482 Type II/IV secretion system protein NIY04_06150 IPR042181 Type II secretion system, protein E, N-terminal NIY04_06150 IPR013374 ATPase, type IV, pilus assembly, PilB NIY04_06150 IPR007831 General secretory system II, protein E, N-terminal NIY04_06150 IPR003593 AAA+ ATPase domain NIY04_06150 IPR037257 General secretory system II, protein E, N-terminal superfamily NIY04_06150 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIY04_06160 IPR001867 OmpR/PhoB-type DNA-binding domain NIY04_06160 IPR011006 CheY-like superfamily NIY04_06160 IPR016032 Signal transduction response regulator, C-terminal effector NIY04_06160 IPR001789 Signal transduction response regulator, receiver domain NIY04_06160 IPR036388 Winged helix-like DNA-binding domain superfamily NIY04_06160 IPR039420 Transcriptional regulatory protein WalR-like NIY04_06165 IPR013727 Two-component sensor kinase, N-terminal NIY04_06165 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily NIY04_06165 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain NIY04_06165 IPR005467 Histidine kinase domain NIY04_06165 IPR036890 Histidine kinase/HSP90-like ATPase superfamily NIY04_06165 IPR003594 Histidine kinase/HSP90-like ATPase NIY04_06165 IPR004358 Signal transduction histidine kinase-related protein, C-terminal NIY04_06175 IPR003561 Mutator MutT NIY04_06175 IPR020476 NUDIX hydrolase NIY04_06175 IPR020084 NUDIX hydrolase, conserved site NIY04_06175 IPR000086 NUDIX hydrolase domain NIY04_06175 IPR015797 NUDIX hydrolase-like domain superfamily NIY04_06185 IPR012338 Beta-lactamase/transpeptidase-like NIY04_06185 IPR001264 Glycosyl transferase, family 51 NIY04_06185 IPR023346 Lysozyme-like domain superfamily NIY04_06185 IPR011813 Penicillin-binding protein 1B NIY04_06185 IPR036950 Penicillin binding protein transglycosylase domain NIY04_06185 IPR001460 Penicillin-binding protein, transpeptidase NIY04_06185 IPR028166 Bifunctional transglycosylase second domain NIY04_06190 IPR002504 NAD kinase NIY04_06190 IPR017438 Inorganic polyphosphate/ATP-NAD kinase, N-terminal NIY04_06190 IPR017437 ATP-NAD kinase, PpnK-type, C-terminal NIY04_06190 IPR016064 NAD kinase/diacylglycerol kinase-like domain superfamily NIY04_06195 IPR009749 Protein of unknown function DUF1315 NIY04_06200 IPR005940 Anthranilate phosphoribosyl transferase NIY04_06200 IPR035902 Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain superfamily NIY04_06200 IPR036320 Glycosyl transferase family 3, N-terminal domain superfamily NIY04_06200 IPR017459 Glycosyl transferase family 3, N-terminal domain NIY04_06200 IPR000312 Glycosyl transferase, family 3 NIY04_06205 IPR023954 C4-dicarboxylate transport protein NIY04_06205 IPR036458 Sodium:dicarboxylate symporter superfamily NIY04_06205 IPR018107 Sodium:dicarboxylate symporter, conserved site NIY04_06205 IPR001991 Sodium:dicarboxylate symporter NIY04_06210 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal NIY04_06210 IPR037069 Acyl-CoA dehydrogenase/oxidase, N-terminal domain superfamily NIY04_06210 IPR006089 Acyl-CoA dehydrogenase, conserved site NIY04_06210 IPR006091 Acyl-CoA oxidase/dehydrogenase, central domain NIY04_06210 IPR036250 Acyl-CoA dehydrogenase-like, C-terminal NIY04_06210 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily NIY04_06210 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal NIY04_06215 IPR029058 Alpha/Beta hydrolase fold NIY04_06215 IPR000801 Putative esterase NIY04_06220 IPR001086 Prephenate dehydratase NIY04_06220 IPR002912 ACT domain NIY04_06220 IPR008242 Bifunctional P-protein, chorismate mutase/prephenate dehydratase NIY04_06220 IPR036263 Chorismate mutase type II superfamily NIY04_06220 IPR036979 Chorismate mutase domain superfamily NIY04_06220 IPR002701 Chorismate mutase II, prokaryotic-type NIY04_06220 IPR010957 Gamma/beta/epsilon proteobacterial P-protein, chorismate mutase domain NIY04_06220 IPR018528 Prephenate dehydratase, conserved site NIY04_06225 IPR013792 RNA 3'-terminal phosphate cyclase/enolpyruvate transferase, alpha/beta NIY04_06225 IPR023193 3-phosphoshikimate 1-carboxyvinyltransferase, conserved site NIY04_06225 IPR036968 Enolpyruvate transferase domain superfamily NIY04_06225 IPR001986 Enolpyruvate transferase domain NIY04_06225 IPR006264 3-phosphoshikimate 1-carboxyvinyltransferase NIY04_06235 IPR002933 Peptidase M20 NIY04_06235 IPR011650 Peptidase M20, dimerisation domain NIY04_06235 IPR001160 Peptidase M20C, Xaa-His dipeptidase NIY04_06240 IPR013792 RNA 3'-terminal phosphate cyclase/enolpyruvate transferase, alpha/beta NIY04_06240 IPR036553 RNA 3'-terminal phosphate cyclase, insert domain superfamily NIY04_06240 IPR020719 RNA 3'-terminal phosphate cyclase-like, conserved site NIY04_06240 IPR017770 RNA 3'-terminal phosphate cyclase type 1 NIY04_06240 IPR000228 RNA 3'-terminal phosphate cyclase NIY04_06240 IPR037136 RNA 3'-terminal phosphate cyclase domain superfamily NIY04_06240 IPR023797 RNA 3'-terminal phosphate cyclase domain NIY04_06240 IPR013791 RNA 3'-terminal phosphate cyclase, insert domain NIY04_06255 IPR036025 tRNA-splicing ligase RtcB-like superfamily NIY04_06255 IPR001233 tRNA-splicing ligase, RtcB NIY04_06260 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like NIY04_06260 IPR001279 Metallo-beta-lactamase NIY04_06260 IPR013471 Ribonuclease Z/BN NIY04_06265 IPR003593 AAA+ ATPase domain NIY04_06265 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIY04_06265 IPR009715 Regulator of RNA terminal phosphate cyclase NIY04_06265 IPR017183 Sigma54-dependent transcriptional activator, RtcR NIY04_06265 IPR002078 RNA polymerase sigma factor 54 interaction domain NIY04_06265 IPR025943 Sigma-54 interaction domain, ATP-binding site 2 NIY04_06275 IPR005583 Peroxide stress protein YaaA NIY04_06285 IPR013785 Aldolase-type TIM barrel NIY04_06285 IPR033983 Thiazole synthase ThiG NIY04_06285 IPR008867 Thiazole synthase NIY04_06295 IPR006696 Protein of unknown function DUF423 NIY04_06300 IPR014284 RNA polymerase sigma-70 like domain NIY04_06300 IPR000943 RNA polymerase sigma-70 NIY04_06300 IPR007627 RNA polymerase sigma-70 region 2 NIY04_06300 IPR007630 RNA polymerase sigma-70 region 4 NIY04_06300 IPR013325 RNA polymerase sigma factor, region 2 NIY04_06300 IPR013324 RNA polymerase sigma factor, region 3/4-like NIY04_06300 IPR012759 RNA polymerase sigma factor RpoH, proteobacteria NIY04_06300 IPR009042 RNA polymerase sigma-70 region 1.2 NIY04_06315 IPR012156 Cold shock, CspA NIY04_06315 IPR011129 Cold shock domain NIY04_06315 IPR019844 Cold-shock (CSD) domain NIY04_06315 IPR002059 Cold-shock protein, DNA-binding NIY04_06315 IPR012340 Nucleic acid-binding, OB-fold NIY04_06320 IPR014014 RNA helicase, DEAD-box type, Q motif NIY04_06320 IPR023554 ATP-dependent RNA helicase RhlB type NIY04_06320 IPR014001 Helicase superfamily 1/2, ATP-binding domain NIY04_06320 IPR001650 Helicase, C-terminal NIY04_06320 IPR011545 DEAD/DEAH box helicase domain NIY04_06320 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIY04_06320 IPR000629 ATP-dependent RNA helicase DEAD-box, conserved site NIY04_06330 IPR029479 Nitroreductase NIY04_06330 IPR026021 Putative NAD(P)H nitroreductase YdjA-like NIY04_06330 IPR000415 Nitroreductase-like NIY04_06335 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily NIY04_06335 IPR013328 6-phosphogluconate dehydrogenase, domain 2 NIY04_06335 IPR006168 Glycerol-3-phosphate dehydrogenase, NAD-dependent NIY04_06335 IPR006109 Glycerol-3-phosphate dehydrogenase, NAD-dependent, C-terminal NIY04_06335 IPR011128 Glycerol-3-phosphate dehydrogenase, NAD-dependent, N-terminal NIY04_06335 IPR036291 NAD(P)-binding domain superfamily NIY04_06355 IPR013785 Aldolase-type TIM barrel NIY04_06355 IPR005720 Dihydroorotate dehydrogenase domain NIY04_06355 IPR012135 Dihydroorotate dehydrogenase, class 1/ 2 NIY04_06355 IPR005719 Dihydroorotate dehydrogenase, class 2 NIY04_06355 IPR001295 Dihydroorotate dehydrogenase, conserved site NIY04_06360 IPR003825 Colicin V production, CvpA NIY04_06365 IPR035584 Amidophosphoribosyltransferase, N-terminal NIY04_06365 IPR005854 Amidophosphoribosyltransferase NIY04_06365 IPR000836 Phosphoribosyltransferase domain NIY04_06365 IPR029055 Nucleophile aminohydrolases, N-terminal NIY04_06365 IPR017932 Glutamine amidotransferase type 2 domain NIY04_06365 IPR029057 Phosphoribosyltransferase-like NIY04_06380 IPR029753 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain conserved site NIY04_06380 IPR006139 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain NIY04_06380 IPR006140 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain NIY04_06380 IPR023756 Glyoxylate/hydroxypyruvate reductase B NIY04_06380 IPR036291 NAD(P)-binding domain superfamily NIY04_06385 IPR001915 Peptidase M48 NIY04_06385 IPR030873 Beta-barrel assembly-enhancing protease NIY04_06385 IPR011990 Tetratricopeptide-like helical domain superfamily NIY04_06390 IPR042184 YqeY/Aim41, N-terminal domain NIY04_06390 IPR023168 Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase, C-terminal, domain 2 NIY04_06390 IPR003789 Aspartyl/glutamyl-tRNA amidotransferase subunit B-like NIY04_06390 IPR019004 Uncharacterised protein YqeY/Aim41 NIY04_06395 IPR001911 Ribosomal protein S21 NIY04_06395 IPR018278 Ribosomal protein S21, conserved site NIY04_06395 IPR038380 Ribosomal protein S21 superfamily NIY04_06400 IPR000905 Gcp-like domain NIY04_06400 IPR017861 Kae1/TsaD family NIY04_06400 IPR017860 Peptidase M22, conserved site NIY04_06400 IPR022450 tRNA N6-adenosine threonylcarbamoyltransferase, TsaD NIY04_06420 IPR008271 Serine/threonine-protein kinase, active site NIY04_06420 IPR017441 Protein kinase, ATP binding site NIY04_06420 IPR005543 PASTA domain NIY04_06420 IPR000719 Protein kinase domain NIY04_06420 IPR011009 Protein kinase-like domain superfamily NIY04_06445 IPR036390 Winged helix DNA-binding domain superfamily NIY04_06445 IPR000847 Transcription regulator HTH, LysR NIY04_06445 IPR036388 Winged helix-like DNA-binding domain superfamily NIY04_06445 IPR005119 LysR, substrate-binding NIY04_06450 IPR015421 Pyridoxal phosphate-dependent transferase, major domain NIY04_06450 IPR005814 Aminotransferase class-III NIY04_06450 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 NIY04_06450 IPR015424 Pyridoxal phosphate-dependent transferase NIY04_06455 IPR016161 Aldehyde/histidinol dehydrogenase NIY04_06455 IPR016163 Aldehyde dehydrogenase, C-terminal NIY04_06455 IPR016160 Aldehyde dehydrogenase, cysteine active site NIY04_06455 IPR016162 Aldehyde dehydrogenase, N-terminal NIY04_06455 IPR015590 Aldehyde dehydrogenase domain NIY04_06455 IPR010061 Methylmalonate-semialdehyde dehydrogenase NIY04_06460 IPR004840 Amino acid permease, conserved site NIY04_06460 IPR004841 Amino acid permease/ SLC12A domain NIY04_06460 IPR011265 GABA permease NIY04_06490 IPR005220 Bacterial OB-fold NIY04_06490 IPR016052 Bacteriophage 933W, L0136 NIY04_06490 IPR036700 Bacterial OB-fold superfamily NIY04_06515 IPR029058 Alpha/Beta hydrolase fold NIY04_06515 IPR000073 Alpha/beta hydrolase fold-1 NIY04_06515 IPR010125 Poly(R)-hydroxyalkanoic acid synthase, class III, PhaC subunit NIY04_06520 IPR004445 Sodium/glutamate symport carrier protein GltS NIY04_06530 IPR036390 Winged helix DNA-binding domain superfamily NIY04_06530 IPR036388 Winged helix-like DNA-binding domain superfamily NIY04_06530 IPR011711 GntR, C-terminal NIY04_06530 IPR000524 Transcription regulator HTH, GntR NIY04_06530 IPR008920 Transcription regulator FadR/GntR, C-terminal NIY04_06580 IPR036259 MFS transporter superfamily NIY04_06580 IPR004736 MFS transporter, metabolite:H symporter NIY04_06580 IPR015041 Osmosensory transporter coiled coil NIY04_06580 IPR036292 Proline/betaine transporter ProP, C-terminal NIY04_06580 IPR005829 Sugar transporter, conserved site NIY04_06580 IPR005828 Major facilitator, sugar transporter-like NIY04_06580 IPR020846 Major facilitator superfamily domain NIY04_06585 IPR015797 NUDIX hydrolase-like domain superfamily NIY04_06585 IPR000086 NUDIX hydrolase domain NIY04_06615 IPR005219 Intermembrane transport protein PqiA-like, Enterobacteria-type NIY04_06615 IPR007498 Intermembrane transport protein PqiA-like NIY04_06620 IPR003399 Mce/MlaD NIY04_06635 IPR001920 Asp/Glu racemase NIY04_06635 IPR018187 Asp/Glu racemase, active site 1 NIY04_06635 IPR033134 Asp/Glu racemase, active site 2 NIY04_06635 IPR004380 Aspartate racemase NIY04_06635 IPR015942 Asp/Glu/hydantoin racemase NIY04_06640 IPR000620 EamA domain NIY04_06645 IPR011042 Six-bladed beta-propeller, TolB-like NIY04_06645 IPR012938 Glucose/Sorbosone dehydrogenase NIY04_06645 IPR011041 Soluble quinoprotein glucose/sorbosone dehydrogenase NIY04_06665 IPR001991 Sodium:dicarboxylate symporter NIY04_06665 IPR023954 C4-dicarboxylate transport protein NIY04_06665 IPR018107 Sodium:dicarboxylate symporter, conserved site NIY04_06665 IPR036458 Sodium:dicarboxylate symporter superfamily NIY04_06675 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like NIY04_06675 IPR035680 Hydroxyacylglutathione hydrolase, MBL domain NIY04_06675 IPR032282 Hydroxyacylglutathione hydrolase, C-terminal domain NIY04_06675 IPR017782 Hydroxyacylglutathione hydrolase NIY04_06675 IPR001279 Metallo-beta-lactamase NIY04_06680 IPR000515 ABC transporter type 1, transmembrane domain MetI-like NIY04_06680 IPR035906 MetI-like superfamily NIY04_06685 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIY04_06685 IPR017908 ABC transporter, methionine import, ATP-binding protein, MetN, C-terminal NIY04_06685 IPR017871 ABC transporter, conserved site NIY04_06685 IPR003439 ABC transporter-like NIY04_06685 IPR026253 Methionine import ATP-binding protein MetN NIY04_06685 IPR003593 AAA+ ATPase domain NIY04_06685 IPR018449 NIL domain NIY04_06685 IPR041701 Methionine import ATP-binding protein MetN, ATP-binding cassette domain NIY04_06690 IPR004872 Lipoprotein NlpA family NIY04_06695 IPR020562 Phosphoribosylglycinamide synthetase, N-terminal NIY04_06695 IPR011054 Rudiment single hybrid motif NIY04_06695 IPR037123 Phosphoribosylglycinamide synthetase, C-domain superfamily NIY04_06695 IPR020559 Phosphoribosylglycinamide synthetase, conserved site NIY04_06695 IPR011761 ATP-grasp fold NIY04_06695 IPR013815 ATP-grasp fold, subdomain 1 NIY04_06695 IPR016185 Pre-ATP-grasp domain superfamily NIY04_06695 IPR020561 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain NIY04_06695 IPR000115 Phosphoribosylglycinamide synthetase NIY04_06695 IPR020560 Phosphoribosylglycinamide synthetase, C-domain NIY04_06700 IPR024051 AICAR transformylase, duplicated domain superfamily NIY04_06700 IPR016193 Cytidine deaminase-like NIY04_06700 IPR011607 Methylglyoxal synthase-like domain NIY04_06700 IPR036914 Methylglyoxal synthase-like domain superfamily NIY04_06700 IPR002695 Bifunctional purine biosynthesis protein PurH-like NIY04_06705 IPR002197 DNA binding HTH domain, Fis-type NIY04_06705 IPR009057 Homeobox-like domain superfamily NIY04_06705 IPR005412 DNA-binding protein Fis NIY04_06715 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase NIY04_06715 IPR004498 Ribosomal protein L11 methyltransferase NIY04_06725 IPR020595 MnmG-related, conserved site NIY04_06725 IPR002218 tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG-related NIY04_06725 IPR004416 tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG NIY04_06725 IPR026904 GidA associated domain 3 NIY04_06725 IPR036188 FAD/NAD(P)-binding domain superfamily NIY04_06735 IPR016450 Uncharacterised conserved protein UCP005522 NIY04_06735 IPR025841 Circularly permuted ATP-grasp type 2 NIY04_06745 IPR038765 Papain-like cysteine peptidase superfamily NIY04_06745 IPR013589 Bacterial transglutaminase-like, N-terminal NIY04_06745 IPR002931 Transglutaminase-like NIY04_06755 IPR029066 PLP-binding barrel NIY04_06755 IPR001608 Alanine racemase, N-terminal NIY04_06755 IPR011079 Alanine racemase, C-terminal NIY04_06755 IPR009006 Alanine racemase/group IV decarboxylase, C-terminal NIY04_06755 IPR000821 Alanine racemase NIY04_06760 IPR003593 AAA+ ATPase domain NIY04_06760 IPR036185 DNA helicase, DnaB-like, N-terminal domain superfamily NIY04_06760 IPR007694 DNA helicase, DnaB-like, C-terminal NIY04_06760 IPR007693 DNA helicase, DnaB-like, N-terminal NIY04_06760 IPR016136 DNA helicase DnaB, N-terminal/DNA primase DnaG, C-terminal NIY04_06760 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIY04_06760 IPR007692 DNA helicase, DnaB type NIY04_06765 IPR020594 Ribosomal protein L9, bacteria/chloroplast NIY04_06765 IPR000244 Ribosomal protein L9 NIY04_06765 IPR036935 Ribosomal protein L9, N-terminal domain superfamily NIY04_06765 IPR009027 Ribosomal protein L9/RNase H1, N-terminal NIY04_06765 IPR020070 Ribosomal protein L9, N-terminal NIY04_06765 IPR020069 Ribosomal protein L9, C-terminal NIY04_06765 IPR036791 Ribosomal protein L9, C-terminal domain superfamily NIY04_06770 IPR036870 Ribosomal protein S18 superfamily NIY04_06770 IPR018275 Ribosomal protein S18, conserved site NIY04_06770 IPR001648 Ribosomal protein S18 NIY04_06775 IPR000529 Ribosomal protein S6 NIY04_06775 IPR020814 Ribosomal protein S6, plastid/chloroplast NIY04_06775 IPR035980 Ribosomal protein S6 superfamily NIY04_06775 IPR014717 Translation elongation factor EF1B/ribosomal protein S6 NIY04_06775 IPR020815 Ribosomal protein S6, conserved site NIY04_06780 IPR006369 Protohaem IX farnesyltransferase NIY04_06780 IPR000537 UbiA prenyltransferase family NIY04_06780 IPR030470 UbiA prenyltransferase conserved site NIY04_06785 IPR014210 Cytochrome o ubiquinol oxidase subunit IV NIY04_06785 IPR005171 Cytochrome C oxidase subunit IV, prokaryotes NIY04_06790 IPR014206 Cytochrome o ubiquinol oxidase, subunit III NIY04_06790 IPR024791 Cytochrome c oxidase subunit III NIY04_06790 IPR000298 Cytochrome c oxidase subunit III-like NIY04_06790 IPR035973 Cytochrome c oxidase subunit III-like superfamily NIY04_06790 IPR013833 Cytochrome c oxidase, subunit III, 4-helical bundle NIY04_06790 IPR033946 Ubiquinol oxidase subunit III domain NIY04_06795 IPR036927 Cytochrome c oxidase-like, subunit I superfamily NIY04_06795 IPR014207 Cytochrome o ubiquinol oxidase, subunit I NIY04_06795 IPR023615 Cytochrome c oxidase, subunit I, copper-binding site NIY04_06795 IPR000883 Cytochrome c oxidase subunit I NIY04_06795 IPR023616 Cytochrome c oxidase-like, subunit I domain NIY04_06800 IPR036257 Cytochrome C oxidase subunit II, transmembrane domain superfamily NIY04_06800 IPR002429 Cytochrome c oxidase subunit II-like C-terminal NIY04_06800 IPR010514 COX aromatic rich motif NIY04_06800 IPR008972 Cupredoxin NIY04_06800 IPR034227 Ubiquinol oxidase subunit 2, cupredoxin domain NIY04_06800 IPR006333 Cytochrome o ubiquinol oxidase subunit II NIY04_06800 IPR011759 Cytochrome C oxidase subunit II, transmembrane domain NIY04_06810 IPR002192 Pyruvate phosphate dikinase, PEP/pyruvate-binding NIY04_06810 IPR036637 Phosphohistidine domain superfamily NIY04_06810 IPR018274 PEP-utilising enzyme, active site NIY04_06810 IPR006319 Phosphoenolpyruvate synthase NIY04_06810 IPR008279 PEP-utilising enzyme, mobile domain NIY04_06810 IPR000121 PEP-utilising enzyme, C-terminal NIY04_06810 IPR023151 PEP-utilising enzyme, conserved site NIY04_06810 IPR040442 Pyruvate kinase-like domain superfamily NIY04_06810 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain superfamily NIY04_06810 IPR013815 ATP-grasp fold, subdomain 1 NIY04_06815 IPR026530 Phosphoenolpyruvate synthase regulatory protein NIY04_06815 IPR005177 Bifunctional kinase-pyrophosphorylase NIY04_06825 IPR032772 Poly-beta-1,6-N-acetyl-D-glucosamine N-deacetylase PgaB, C-terminal NIY04_06825 IPR023854 Poly-beta-1,6-N-acetyl-D-glucosamine N-deacetylase PgaB NIY04_06825 IPR002509 NodB homology domain NIY04_06825 IPR011330 Glycoside hydrolase/deacetylase, beta/alpha-barrel NIY04_06830 IPR001173 Glycosyltransferase 2-like NIY04_06830 IPR029044 Nucleotide-diphospho-sugar transferases NIY04_06830 IPR023853 Poly-beta-1,6 N-acetyl-D-glucosamine synthase PgaC/IcaA NIY04_06835 IPR023829 Poly-beta-1,6-N-acetyl-D-glucosamine biosynthesis protein PgaD NIY04_06845 IPR019949 Luciferase family oxidoreductase, group 1 NIY04_06845 IPR011251 Luciferase-like domain NIY04_06845 IPR036661 Luciferase-like domain superfamily NIY04_06860 IPR005119 LysR, substrate-binding NIY04_06860 IPR000847 Transcription regulator HTH, LysR NIY04_06860 IPR036388 Winged helix-like DNA-binding domain superfamily NIY04_06860 IPR036390 Winged helix DNA-binding domain superfamily NIY04_06870 IPR005139 Peptide chain release factor NIY04_06870 IPR000352 Peptide chain release factor class I NIY04_06870 IPR004373 Peptide chain release factor 1 NIY04_06875 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase NIY04_06875 IPR019874 Protein-(glutamine-N5) methyltransferase, release factor-specific NIY04_06875 IPR025714 Methyltransferase domain NIY04_06875 IPR004556 Methyltransferase HemK-like NIY04_06875 IPR002052 DNA methylase, N-6 adenine-specific, conserved site NIY04_06875 IPR040758 Release factor glutamine methyltransferase, N-terminal domain NIY04_06880 IPR009057 Homeobox-like domain superfamily NIY04_06880 IPR018060 DNA binding HTH domain, AraC-type NIY04_06880 IPR018062 HTH domain AraC-type, conserved site NIY04_06880 IPR020449 Transcription regulator HTH, AraC- type NIY04_06885 IPR036291 NAD(P)-binding domain superfamily NIY04_06885 IPR020904 Short-chain dehydrogenase/reductase, conserved site NIY04_06885 IPR002347 Short-chain dehydrogenase/reductase SDR NIY04_06890 IPR006089 Acyl-CoA dehydrogenase, conserved site NIY04_06890 IPR037069 Acyl-CoA dehydrogenase/oxidase, N-terminal domain superfamily NIY04_06890 IPR006091 Acyl-CoA oxidase/dehydrogenase, central domain NIY04_06890 IPR036250 Acyl-CoA dehydrogenase-like, C-terminal NIY04_06890 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal NIY04_06890 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily NIY04_06890 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal NIY04_06895 IPR042099 AMP-dependent synthetase-like superfamily NIY04_06895 IPR020845 AMP-binding, conserved site NIY04_06895 IPR025110 AMP-binding enzyme, C-terminal domain NIY04_06895 IPR000873 AMP-dependent synthetase/ligase NIY04_06900 IPR002563 Flavin reductase like domain NIY04_06900 IPR012349 FMN-binding split barrel NIY04_06905 IPR012730 Molybdopterin synthase sulfurylase MoeB NIY04_06905 IPR000594 THIF-type NAD/FAD binding fold NIY04_06905 IPR035985 Ubiquitin-activating enzyme NIY04_06910 IPR011009 Protein kinase-like domain superfamily NIY04_06910 IPR000719 Protein kinase domain NIY04_06910 IPR004147 UbiB domain NIY04_06915 IPR006157 Dihydroneopterin aldolase/epimerase domain NIY04_06915 IPR006156 Dihydroneopterin aldolase NIY04_06925 IPR004623 Potassium-transporting ATPase A chain NIY04_06925 IPR023298 P-type ATPase, transmembrane domain superfamily NIY04_06930 IPR023299 P-type ATPase, cytoplasmic domain N NIY04_06930 IPR036412 HAD-like superfamily NIY04_06930 IPR006391 P-type ATPase, B chain, subfamily IA NIY04_06930 IPR001757 P-type ATPase NIY04_06930 IPR008250 P-type ATPase, A domain superfamily NIY04_06930 IPR023298 P-type ATPase, transmembrane domain superfamily NIY04_06930 IPR018303 P-type ATPase, phosphorylation site NIY04_06935 IPR003820 Potassium-transporting ATPase C chain NIY04_06940 IPR038318 KdpD, transmembrane domain superfamily NIY04_06940 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily NIY04_06940 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain NIY04_06940 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIY04_06940 IPR036890 Histidine kinase/HSP90-like ATPase superfamily NIY04_06940 IPR003594 Histidine kinase/HSP90-like ATPase NIY04_06940 IPR029016 GAF-like domain superfamily NIY04_06940 IPR004358 Signal transduction histidine kinase-related protein, C-terminal NIY04_06940 IPR003852 Signal transduction histidine kinase, osmosensitive K+ channel sensor, N-terminal NIY04_06940 IPR025201 Sensor protein KdpD, transmembrane domain NIY04_06940 IPR005467 Histidine kinase domain NIY04_06945 IPR001867 OmpR/PhoB-type DNA-binding domain NIY04_06945 IPR011006 CheY-like superfamily NIY04_06945 IPR001789 Signal transduction response regulator, receiver domain NIY04_06945 IPR039420 Transcriptional regulatory protein WalR-like NIY04_06945 IPR036388 Winged helix-like DNA-binding domain superfamily NIY04_06950 IPR036651 Glutamine synthetase, N-terminal domain superfamily NIY04_06950 IPR014746 Glutamine synthetase/guanido kinase, catalytic domain NIY04_06950 IPR008146 Glutamine synthetase, catalytic domain NIY04_06950 IPR027303 Glutamine synthetase, glycine-rich site NIY04_06960 IPR009078 Ferritin-like superfamily NIY04_06960 IPR011566 Ubiquinone biosynthesis protein Coq7 NIY04_06965 IPR036259 MFS transporter superfamily NIY04_06965 IPR011701 Major facilitator superfamily NIY04_06965 IPR023727 Lysophospholipid transporter LplT NIY04_06970 IPR000184 Bacterial surface antigen (D15) NIY04_06970 IPR010827 POTRA domain, BamA/TamA-like NIY04_06970 IPR039910 Surface antigen D15-like NIY04_06970 IPR034746 POTRA domain NIY04_06970 IPR035243 TamA, POTRA domain 1 NIY04_06985 IPR015932 Aconitase, domain 2 NIY04_06985 IPR015929 Aconitase B, swivel NIY04_06985 IPR015933 Aconitase B, HEAT-like domain NIY04_06985 IPR004406 Aconitase B NIY04_06985 IPR036008 Aconitase, iron-sulfur domain NIY04_06985 IPR036288 Aconitase B, HEAT-like domain superfamily NIY04_06985 IPR015928 Aconitase/3-isopropylmalate dehydratase, swivel NIY04_06985 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain NIY04_06985 IPR015931 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha, subdomain 1/3 NIY04_06985 IPR018136 Aconitase family, 4Fe-4S cluster binding site NIY04_06995 IPR018490 Cyclic nucleotide-binding-like NIY04_06995 IPR018488 Cyclic nucleotide-binding, conserved site NIY04_06995 IPR000595 Cyclic nucleotide-binding domain NIY04_06995 IPR005821 Ion transport domain NIY04_06995 IPR014710 RmlC-like jelly roll fold NIY04_06995 IPR028325 Voltage-gated potassium channel NIY04_07000 IPR036259 MFS transporter superfamily NIY04_07000 IPR020846 Major facilitator superfamily domain NIY04_07000 IPR011701 Major facilitator superfamily NIY04_07015 IPR036390 Winged helix DNA-binding domain superfamily NIY04_07015 IPR036388 Winged helix-like DNA-binding domain superfamily NIY04_07015 IPR037406 HTH-type transcriptional regulator MetR, PBP2 domain NIY04_07015 IPR005119 LysR, substrate-binding NIY04_07015 IPR000847 Transcription regulator HTH, LysR NIY04_07020 IPR007382 Uncharacterised protein family UPF0756, transmembrame NIY04_07030 IPR036986 RNA-binding S4 domain superfamily NIY04_07030 IPR018496 Pseudouridine synthase, RsuA/RluB/E/F, conserved site NIY04_07030 IPR002942 RNA-binding S4 domain NIY04_07030 IPR006145 Pseudouridine synthase, RsuA/RluA NIY04_07030 IPR020103 Pseudouridine synthase, catalytic domain superfamily NIY04_07030 IPR042092 Pseudouridine synthase, RsuA/RluB/E/F, catalytic domain NIY04_07030 IPR000748 Pseudouridine synthase, RsuA/RluB/E/F NIY04_07045 IPR020103 Pseudouridine synthase, catalytic domain superfamily NIY04_07045 IPR036986 RNA-binding S4 domain superfamily NIY04_07045 IPR006224 Pseudouridine synthase, RluC/RluD, conserved site NIY04_07045 IPR006145 Pseudouridine synthase, RsuA/RluA NIY04_07045 IPR002942 RNA-binding S4 domain NIY04_07045 IPR006225 Pseudouridine synthase, RluC/RluD NIY04_07050 IPR003442 tRNA threonylcarbamoyl adenosine modification protein TsaE NIY04_07050 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIY04_07055 IPR014762 DNA mismatch repair, conserved site NIY04_07055 IPR020667 DNA mismatch repair protein, MutL NIY04_07055 IPR002099 DNA mismatch repair protein family, N-terminal NIY04_07055 IPR013507 DNA mismatch repair protein, S5 domain 2-like NIY04_07055 IPR036890 Histidine kinase/HSP90-like ATPase superfamily NIY04_07055 IPR038973 DNA mismatch repair protein MutL/Mlh/Pms NIY04_07055 IPR014790 MutL, C-terminal, dimerisation NIY04_07055 IPR042120 MutL, C-terminal domain, dimerisation subdomain NIY04_07055 IPR042121 MutL, C-terminal domain, regulatory subdomain NIY04_07055 IPR037198 MutL, C-terminal domain superfamily NIY04_07055 IPR020568 Ribosomal protein S5 domain 2-type fold NIY04_07055 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup NIY04_07060 IPR039657 Dimethylallyltransferase NIY04_07060 IPR018022 IPP transferase NIY04_07060 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIY04_07065 IPR010920 LSM domain superfamily NIY04_07065 IPR005001 RNA-binding protein Hfq NIY04_07075 IPR033878 Nitroreductase NfsB-like NIY04_07075 IPR029479 Nitroreductase NIY04_07075 IPR000415 Nitroreductase-like NIY04_07085 IPR004843 Calcineurin-like phosphoesterase domain, ApaH type NIY04_07085 IPR029052 Metallo-dependent phosphatase-like NIY04_07085 IPR010138 UDP-2,3-diacylglucosamine hydrolase NIY04_07090 IPR029000 Cyclophilin-like domain superfamily NIY04_07090 IPR024936 Cyclophilin-type peptidyl-prolyl cis-trans isomerase NIY04_07090 IPR020892 Cyclophilin-type peptidyl-prolyl cis-trans isomerase, conserved site NIY04_07090 IPR002130 Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain NIY04_07095 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold NIY04_07095 IPR020061 Glutamine-tRNA ligase, alpha-bundle domain superfamily NIY04_07095 IPR020059 Glutamyl/glutaminyl-tRNA synthetase, class Ib, anti-codon binding domain NIY04_07095 IPR020058 Glutamyl/glutaminyl-tRNA synthetase, class Ib, catalytic domain NIY04_07095 IPR000924 Glutamyl/glutaminyl-tRNA synthetase NIY04_07095 IPR020056 Ribosomal protein L25/Gln-tRNA synthetase, N-terminal NIY04_07095 IPR004514 Glutamine-tRNA synthetase NIY04_07095 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site NIY04_07095 IPR022861 Glutamine-tRNA ligase, bacterial NIY04_07095 IPR011035 Ribosomal protein L25/Gln-tRNA synthetase, anti-codon-binding domain superfamily NIY04_07100 IPR022955 GMP synthase NIY04_07100 IPR022310 NAD/GMP synthase NIY04_07100 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold NIY04_07100 IPR017926 Glutamine amidotransferase NIY04_07100 IPR029062 Class I glutamine amidotransferase-like NIY04_07100 IPR025777 GMP synthetase ATP pyrophosphatase domain NIY04_07100 IPR001674 GMP synthase, C-terminal NIY04_07100 IPR004739 GMP synthase, glutamine amidotransferase NIY04_07105 IPR042255 Ethanolamine ammonia-lyase light chain, N-terminal NIY04_07105 IPR042251 Ethanolamine ammonia-lyase light chain, C-terminal NIY04_07105 IPR009246 Ethanolamine ammonia-lyase light chain NIY04_07110 IPR010628 Ethanolamine ammonia lyase large subunit NIY04_07110 IPR013785 Aldolase-type TIM barrel NIY04_07115 IPR002293 Amino acid/polyamine transporter I NIY04_07120 IPR016161 Aldehyde/histidinol dehydrogenase NIY04_07120 IPR016163 Aldehyde dehydrogenase, C-terminal NIY04_07120 IPR015590 Aldehyde dehydrogenase domain NIY04_07120 IPR016162 Aldehyde dehydrogenase, N-terminal NIY04_07120 IPR029510 Aldehyde dehydrogenase, glutamic acid active site NIY04_07120 IPR016160 Aldehyde dehydrogenase, cysteine active site NIY04_07125 IPR029016 GAF-like domain superfamily NIY04_07135 IPR001670 Alcohol dehydrogenase, iron-type/glycerol dehydrogenase GldA NIY04_07135 IPR018211 Alcohol dehydrogenase, iron-type, conserved site NIY04_07135 IPR039697 Iron-type alcohol dehydrogenase-like NIY04_07140 IPR029491 Helicase Helix-turn-helix domain NIY04_07140 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIY04_07140 IPR003593 AAA+ ATPase domain NIY04_07140 IPR010285 DNA helicase Pif1-like NIY04_07150 IPR000417 Hydroxyethylthiazole kinase NIY04_07150 IPR029056 Ribokinase-like NIY04_07165 IPR027268 Peptidase M4/M1, CTD superfamily NIY04_07165 IPR035414 Peptidase M1, alanyl aminopeptidase, Ig-like fold NIY04_07165 IPR042097 Aminopeptidase N-like , N-terminal NIY04_07165 IPR038438 Alanyl aminopeptidase, Ig-like domain superfamily NIY04_07165 IPR001930 Peptidase M1, alanine aminopeptidase/leukotriene A4 hydrolase NIY04_07165 IPR014782 Peptidase M1, membrane alanine aminopeptidase NIY04_07165 IPR012779 Peptidase M1, alanyl aminopeptidase NIY04_07165 IPR024601 Peptidase M1, alanyl aminopeptidase, C-terminal NIY04_07165 IPR037144 Peptidase M1, alanyl aminopeptidase, C-terminal domain superfamily NIY04_07180 IPR000015 Outer membrane usher protein NIY04_07180 IPR018030 Fimbrial membrane usher, conserved site NIY04_07180 IPR037224 PapC, N-terminal domain superfamily NIY04_07180 IPR042186 Outer membrane usher protein FimD, plug domain NIY04_07180 IPR025949 PapC-like, C-terminal domain NIY04_07180 IPR025885 PapC, N-terminal domain NIY04_07205 IPR002701 Chorismate mutase II, prokaryotic-type NIY04_07205 IPR008240 Chorismate mutase, periplasmic NIY04_07205 IPR036263 Chorismate mutase type II superfamily NIY04_07210 IPR036388 Winged helix-like DNA-binding domain superfamily NIY04_07210 IPR019885 Transcription regulator HTH, AsnC-type, conserved site NIY04_07210 IPR019887 Transcription regulator AsnC/Lrp, ligand binding domain NIY04_07210 IPR019888 Transcription regulator AsnC-type NIY04_07210 IPR011008 Dimeric alpha-beta barrel NIY04_07210 IPR000485 AsnC-type HTH domain NIY04_07210 IPR011991 ArsR-like helix-turn-helix domain NIY04_07210 IPR036390 Winged helix DNA-binding domain superfamily NIY04_07225 IPR001647 DNA-binding HTH domain, TetR-type NIY04_07225 IPR009057 Homeobox-like domain superfamily NIY04_07230 IPR039426 Vitamin B12 transporter BtuB-like NIY04_07230 IPR012910 TonB-dependent receptor, plug domain NIY04_07230 IPR010105 TonB-dependent siderophore receptor NIY04_07230 IPR036942 TonB-dependent receptor-like, beta-barrel domain superfamily NIY04_07230 IPR000531 TonB-dependent receptor-like, beta-barrel NIY04_07230 IPR037066 TonB-dependent receptor, plug domain superfamily NIY04_07235 IPR030192 Miniconductance mechanosensitive channel YbdG NIY04_07235 IPR011066 Mechanosensitive ion channel MscS, C-terminal NIY04_07235 IPR006685 Mechanosensitive ion channel MscS NIY04_07235 IPR010920 LSM domain superfamily NIY04_07265 IPR037066 TonB-dependent receptor, plug domain superfamily NIY04_07265 IPR010105 TonB-dependent siderophore receptor NIY04_07265 IPR010917 TonB-dependent receptor, conserved site NIY04_07265 IPR036942 TonB-dependent receptor-like, beta-barrel domain superfamily NIY04_07265 IPR010916 TonB box, conserved site NIY04_07265 IPR000531 TonB-dependent receptor-like, beta-barrel NIY04_07265 IPR039423 TonB-dependent receptor-like NIY04_07265 IPR012910 TonB-dependent receptor, plug domain NIY04_07285 IPR017871 ABC transporter, conserved site NIY04_07285 IPR003439 ABC transporter-like NIY04_07285 IPR032781 ABC-transporter extension domain NIY04_07285 IPR003593 AAA+ ATPase domain NIY04_07285 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIY04_07290 IPR006015 Universal stress protein A family NIY04_07290 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold NIY04_07290 IPR006016 UspA NIY04_07310 IPR036412 HAD-like superfamily NIY04_07310 IPR023214 HAD superfamily NIY04_07310 IPR008250 P-type ATPase, A domain superfamily NIY04_07310 IPR006415 P-type ATPase, subfamily IIIB NIY04_07310 IPR001757 P-type ATPase NIY04_07310 IPR018303 P-type ATPase, phosphorylation site NIY04_07310 IPR023299 P-type ATPase, cytoplasmic domain N NIY04_07310 IPR004014 Cation-transporting P-type ATPase, N-terminal NIY04_07310 IPR023298 P-type ATPase, transmembrane domain superfamily NIY04_07310 IPR006068 Cation-transporting P-type ATPase, C-terminal NIY04_07315 IPR003416 MgtC/SapB/SrpB/YhiD family NIY04_07320 IPR004711 Benzoate transporter NIY04_07325 IPR036388 Winged helix-like DNA-binding domain superfamily NIY04_07325 IPR019885 Transcription regulator HTH, AsnC-type, conserved site NIY04_07325 IPR019888 Transcription regulator AsnC-type NIY04_07325 IPR036390 Winged helix DNA-binding domain superfamily NIY04_07325 IPR011008 Dimeric alpha-beta barrel NIY04_07325 IPR000485 AsnC-type HTH domain NIY04_07325 IPR011991 ArsR-like helix-turn-helix domain NIY04_07325 IPR019887 Transcription regulator AsnC/Lrp, ligand binding domain NIY04_07330 IPR004778 Homoserine/Threonine efflux protein NIY04_07330 IPR001123 Amino acid exporter protein, LeuE-type NIY04_07335 IPR004730 Transaldolase type 1 NIY04_07335 IPR001585 Transaldolase/Fructose-6-phosphate aldolase NIY04_07335 IPR013785 Aldolase-type TIM barrel NIY04_07335 IPR018225 Transaldolase, active site NIY04_07340 IPR000847 Transcription regulator HTH, LysR NIY04_07340 IPR005119 LysR, substrate-binding NIY04_07340 IPR036388 Winged helix-like DNA-binding domain superfamily NIY04_07340 IPR036390 Winged helix DNA-binding domain superfamily NIY04_07350 IPR012806 Acetyl-CoA C-acyltransferase FadI NIY04_07350 IPR002155 Thiolase NIY04_07350 IPR016039 Thiolase-like NIY04_07350 IPR020610 Thiolase, active site NIY04_07350 IPR020617 Thiolase, C-terminal NIY04_07350 IPR020613 Thiolase, conserved site NIY04_07350 IPR020616 Thiolase, N-terminal NIY04_07355 IPR002347 Short-chain dehydrogenase/reductase SDR NIY04_07355 IPR011284 3-oxoacyl-(acyl-carrier-protein) reductase NIY04_07355 IPR020904 Short-chain dehydrogenase/reductase, conserved site NIY04_07355 IPR036291 NAD(P)-binding domain superfamily NIY04_07360 IPR002539 MaoC-like dehydratase domain NIY04_07360 IPR029069 HotDog domain superfamily NIY04_07360 IPR003965 Fatty acid synthase NIY04_07365 IPR001466 Beta-lactamase-related NIY04_07365 IPR012338 Beta-lactamase/transpeptidase-like NIY04_07375 IPR011701 Major facilitator superfamily NIY04_07375 IPR020846 Major facilitator superfamily domain NIY04_07375 IPR036259 MFS transporter superfamily NIY04_07380 IPR021029 DNA polymerase III, tau subunit, domain V NIY04_07380 IPR038249 DNA polymerase III, tau subunit, C-terminal domain superfamily NIY04_07380 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIY04_07380 IPR022754 DNA polymerase III, gamma subunit, domain III NIY04_07380 IPR012763 DNA polymerase III, subunit gamma/ tau NIY04_07380 IPR008921 DNA polymerase III, clamp loader complex, gamma/delta/delta subunit, C-terminal NIY04_07380 IPR001270 ClpA/B family NIY04_07380 IPR003593 AAA+ ATPase domain NIY04_07380 IPR022001 DNA polymerase III subunit tau, DnaB-binding domain IV NIY04_07385 IPR017850 Alkaline-phosphatase-like, core domain superfamily NIY04_07385 IPR017767 Bacterial phospholipase C, phosphocholine-specific NIY04_07385 IPR007312 Phosphoesterase NIY04_07385 IPR008475 Bacterial phospholipase C, C-terminal domain NIY04_07385 IPR006311 Twin-arginine translocation pathway, signal sequence NIY04_07390 IPR029069 HotDog domain superfamily NIY04_07390 IPR006683 Thioesterase domain NIY04_07395 IPR001670 Alcohol dehydrogenase, iron-type/glycerol dehydrogenase GldA NIY04_07395 IPR039697 Iron-type alcohol dehydrogenase-like NIY04_07395 IPR018211 Alcohol dehydrogenase, iron-type, conserved site NIY04_07405 IPR017867 Protein-tyrosine phosphatase, low molecular weight NIY04_07405 IPR036196 Phosphotyrosine protein phosphatase I superfamily NIY04_07405 IPR023485 Phosphotyrosine protein phosphatase I NIY04_07410 IPR016166 FAD-binding domain, PCMH-type NIY04_07410 IPR036318 FAD-binding, type PCMH-like superfamily NIY04_07410 IPR016167 FAD-binding, type PCMH, subdomain 1 NIY04_07410 IPR016169 FAD-binding, type PCMH, subdomain 2 NIY04_07410 IPR003170 UDP-N-acetylenolpyruvoylglucosamine reductase NIY04_07410 IPR011601 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal NIY04_07410 IPR036635 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain superfamily NIY04_07410 IPR006094 FAD linked oxidase, N-terminal NIY04_07425 IPR027283 Glutamate synthase large subunit-like protein, bacteria NIY04_07425 IPR002932 Glutamate synthase domain NIY04_07425 IPR013785 Aldolase-type TIM barrel NIY04_07425 IPR024188 Glutamate synthase large subunit-like protein NIY04_07530 IPR001525 C-5 cytosine methyltransferase NIY04_07530 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase NIY04_07570 IPR003497 BRO N-terminal domain NIY04_07570 IPR018876 Bacteriophage P22, antirepressor protein, C-terminal NIY04_07715 IPR031807 HicB-like antitoxin of toxin-antitoxin system NIY04_07715 IPR035069 TTHA1013/TTHA0281-like NIY04_07785 IPR024728 DNA polymerase type-Y, HhH motif NIY04_07785 IPR036775 DNA polymerase, Y-family, little finger domain superfamily NIY04_07785 IPR017961 DNA polymerase, Y-family, little finger domain NIY04_07785 IPR001126 UmuC domain NIY04_07785 IPR025188 Domain of unknown function DUF4113 NIY04_07800 IPR024989 Major facilitator superfamily associated domain NIY04_07800 IPR036259 MFS transporter superfamily NIY04_07800 IPR026032 Probable 3-phenylpropionic acid transporter NIY04_07810 IPR005482 Biotin carboxylase, C-terminal NIY04_07810 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain NIY04_07810 IPR004549 Acetyl-CoA carboxylase, biotin carboxylase NIY04_07810 IPR016185 Pre-ATP-grasp domain superfamily NIY04_07810 IPR013815 ATP-grasp fold, subdomain 1 NIY04_07810 IPR011761 ATP-grasp fold NIY04_07810 IPR011054 Rudiment single hybrid motif NIY04_07810 IPR005481 Biotin carboxylase-like, N-terminal domain NIY04_07810 IPR011764 Biotin carboxylation domain NIY04_07815 IPR011053 Single hybrid motif NIY04_07815 IPR000089 Biotin/lipoyl attachment NIY04_07815 IPR001882 Biotin-binding site NIY04_07815 IPR001249 Acetyl-CoA biotin carboxyl carrier NIY04_07820 IPR001874 Dehydroquinase, class II NIY04_07820 IPR018509 Dehydroquinase, class II, conserved site NIY04_07820 IPR036441 Dehydroquinase, class II superfamily NIY04_07825 IPR036775 DNA polymerase, Y-family, little finger domain superfamily NIY04_07825 IPR017961 DNA polymerase, Y-family, little finger domain NIY04_07825 IPR025188 Domain of unknown function DUF4113 NIY04_07825 IPR001126 UmuC domain NIY04_07835 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIY04_07835 IPR005890 Nitrate transport ATP-binding subunit C/D NIY04_07835 IPR003439 ABC transporter-like NIY04_07835 IPR003593 AAA+ ATPase domain NIY04_07835 IPR017871 ABC transporter, conserved site NIY04_07840 IPR011006 CheY-like superfamily NIY04_07840 IPR001867 OmpR/PhoB-type DNA-binding domain NIY04_07840 IPR016032 Signal transduction response regulator, C-terminal effector NIY04_07840 IPR001789 Signal transduction response regulator, receiver domain NIY04_07840 IPR039420 Transcriptional regulatory protein WalR-like NIY04_07840 IPR036388 Winged helix-like DNA-binding domain superfamily NIY04_07850 IPR007419 BFD-like [2Fe-2S]-binding domain NIY04_07850 IPR012744 Nitrite reductase [NAD(P)H] large subunit, NirB NIY04_07850 IPR036188 FAD/NAD(P)-binding domain superfamily NIY04_07850 IPR023753 FAD/NAD(P)-binding domain NIY04_07850 IPR005117 Nitrite/Sulfite reductase ferredoxin-like domain NIY04_07850 IPR036136 Nitrite/Sulfite reductase ferredoxin-like domain superfamily NIY04_07850 IPR006067 Nitrite/sulphite reductase 4Fe-4S domain NIY04_07850 IPR041854 BFD-like [2Fe-2S]-binding domain superfamily NIY04_07850 IPR012748 Rieske-like [2Fe-2S] domain, NirD-type NIY04_07850 IPR036922 Rieske [2Fe-2S] iron-sulphur domain superfamily NIY04_07850 IPR041575 NADH-rubredoxin oxidoreductase, C-terminal NIY04_07850 IPR006066 Nitrite/sulphite reductase iron-sulphur/sirohaem-binding site NIY04_07855 IPR041575 NADH-rubredoxin oxidoreductase, C-terminal NIY04_07855 IPR006066 Nitrite/sulphite reductase iron-sulphur/sirohaem-binding site NIY04_07855 IPR006067 Nitrite/sulphite reductase 4Fe-4S domain NIY04_07855 IPR017121 Nitrite reductase [NAD(P)H], large subunit NIY04_07855 IPR012744 Nitrite reductase [NAD(P)H] large subunit, NirB NIY04_07855 IPR036136 Nitrite/Sulfite reductase ferredoxin-like domain superfamily NIY04_07855 IPR016156 FAD/NAD-linked reductase, dimerisation domain superfamily NIY04_07855 IPR023753 FAD/NAD(P)-binding domain NIY04_07855 IPR036188 FAD/NAD(P)-binding domain superfamily NIY04_07855 IPR041854 BFD-like [2Fe-2S]-binding domain superfamily NIY04_07855 IPR007419 BFD-like [2Fe-2S]-binding domain NIY04_07855 IPR005117 Nitrite/Sulfite reductase ferredoxin-like domain NIY04_07860 IPR027467 Molybdopterin oxidoreductase, molybdopterin cofactor binding site NIY04_07860 IPR006963 Molybdopterin oxidoreductase, 4Fe-4S domain NIY04_07860 IPR006657 Molybdopterin dinucleotide-binding domain NIY04_07860 IPR006656 Molybdopterin oxidoreductase NIY04_07860 IPR041854 BFD-like [2Fe-2S]-binding domain superfamily NIY04_07860 IPR007419 BFD-like [2Fe-2S]-binding domain NIY04_07860 IPR009010 Aspartate decarboxylase-like domain superfamily NIY04_07860 IPR041957 Nitrate reductase NapA-like, molybdopterin-binding domain NIY04_07865 IPR013482 Molybdenum cofactor guanylyltransferase NIY04_07865 IPR025877 MobA-like NTP transferase NIY04_07865 IPR029044 Nucleotide-diphospho-sugar transferases NIY04_07870 IPR009010 Aspartate decarboxylase-like domain superfamily NIY04_07870 IPR041957 Nitrate reductase NapA-like, molybdopterin-binding domain NIY04_07870 IPR006657 Molybdopterin dinucleotide-binding domain NIY04_07870 IPR006656 Molybdopterin oxidoreductase NIY04_07870 IPR006963 Molybdopterin oxidoreductase, 4Fe-4S domain NIY04_07870 IPR027467 Molybdopterin oxidoreductase, molybdopterin cofactor binding site NIY04_07875 IPR013785 Aldolase-type TIM barrel NIY04_07875 IPR006638 Elp3/MiaB/NifB NIY04_07875 IPR013483 Molybdenum cofactor biosynthesis protein A NIY04_07875 IPR000385 MoaA/nifB/pqqE, iron-sulphur binding, conserved site NIY04_07875 IPR010505 Molybdenum cofactor synthesis C-terminal NIY04_07875 IPR007197 Radical SAM NIY04_07885 IPR036563 Molybdopterin biosynthesis MoaE subunit superfamily NIY04_07885 IPR003448 Molybdopterin biosynthesis MoaE NIY04_07890 IPR023045 Molybdenum cofactor biosynthesis C NIY04_07890 IPR002820 Molybdopterin cofactor biosynthesis C (MoaC) domain NIY04_07890 IPR036522 Molybdopterin cofactor biosynthesis C (MoaC) domain superfamily NIY04_07890 IPR012247 Bifunctional molybdenum cofactor biosynthesis protein MoaC/MogA NIY04_07890 IPR001453 MoaB/Mog domain NIY04_07890 IPR036425 MoaB/Mog-like domain superfamily NIY04_07895 IPR005110 MoeA, N-terminal and linker domain NIY04_07895 IPR005111 MoeA, C-terminal, domain IV NIY04_07895 IPR038987 Molybdopterin biosynthesis protein MoeA-like NIY04_07895 IPR008284 Molybdenum cofactor biosynthesis, conserved site NIY04_07895 IPR001453 MoaB/Mog domain NIY04_07895 IPR036425 MoaB/Mog-like domain superfamily NIY04_07895 IPR036135 MoeA, N-terminal and linker domain superfamily NIY04_07895 IPR036688 MoeA, C-terminal, domain IV superfamily NIY04_07900 IPR011991 ArsR-like helix-turn-helix domain NIY04_07900 IPR002577 Helix-turn-helix, HxlR type NIY04_07900 IPR036390 Winged helix DNA-binding domain superfamily NIY04_07900 IPR036388 Winged helix-like DNA-binding domain superfamily NIY04_07905 IPR004839 Aminotransferase, class I/classII NIY04_07905 IPR015424 Pyridoxal phosphate-dependent transferase NIY04_07905 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 NIY04_07905 IPR015421 Pyridoxal phosphate-dependent transferase, major domain NIY04_07905 IPR000524 Transcription regulator HTH, GntR NIY04_07905 IPR036388 Winged helix-like DNA-binding domain superfamily NIY04_07905 IPR036390 Winged helix DNA-binding domain superfamily NIY04_07910 IPR000620 EamA domain NIY04_07930 IPR027396 DsrEFH-like NIY04_07930 IPR017463 Sulphur relay, TusD/DsrE NIY04_07930 IPR003787 Sulphur relay, DsrE/F-like protein NIY04_07935 IPR005886 UDP-glucose 4-epimerase NIY04_07935 IPR036291 NAD(P)-binding domain superfamily NIY04_07935 IPR016040 NAD(P)-binding domain NIY04_07940 IPR005677 Fumarate hydratase, class II NIY04_07940 IPR024083 Fumarase/histidase, N-terminal NIY04_07940 IPR018951 Fumarase C, C-terminal NIY04_07940 IPR008948 L-Aspartase-like NIY04_07940 IPR000362 Fumarate lyase family NIY04_07940 IPR022761 Fumarate lyase, N-terminal NIY04_07940 IPR020557 Fumarate lyase, conserved site NIY04_07960 IPR036188 FAD/NAD(P)-binding domain superfamily NIY04_07960 IPR023080 D-amino acid dehydrogenase DadA NIY04_07960 IPR006076 FAD dependent oxidoreductase NIY04_07970 IPR020555 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, conserved site NIY04_07970 IPR003526 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase NIY04_07970 IPR036571 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase superfamily NIY04_07980 IPR006131 Aspartate/ornithine carbamoyltransferase, Asp/Orn-binding domain NIY04_07980 IPR024904 Ornithine carbamoyltransferase NIY04_07980 IPR002292 Ornithine/putrescine carbamoyltransferase NIY04_07980 IPR036901 Aspartate/ornithine carbamoyltransferase superfamily NIY04_07980 IPR006132 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding NIY04_07980 IPR006130 Aspartate/ornithine carbamoyltransferase NIY04_07985 IPR023772 DNA-binding HTH domain, TetR-type, conserved site NIY04_07985 IPR001647 DNA-binding HTH domain, TetR-type NIY04_07985 IPR009057 Homeobox-like domain superfamily NIY04_07990 IPR011006 CheY-like superfamily NIY04_07990 IPR001789 Signal transduction response regulator, receiver domain NIY04_07990 IPR002078 RNA polymerase sigma factor 54 interaction domain NIY04_07990 IPR003593 AAA+ ATPase domain NIY04_07990 IPR010114 DNA-binding transcriptional regulator NtrC NIY04_07990 IPR025944 Sigma-54 interaction domain, conserved site NIY04_07990 IPR025943 Sigma-54 interaction domain, ATP-binding site 2 NIY04_07990 IPR025662 Sigma-54 interaction domain, ATP-binding site 1 NIY04_07990 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIY04_07990 IPR002197 DNA binding HTH domain, Fis-type NIY04_07990 IPR009057 Homeobox-like domain superfamily NIY04_07995 IPR003594 Histidine kinase/HSP90-like ATPase NIY04_07995 IPR004358 Signal transduction histidine kinase-related protein, C-terminal NIY04_07995 IPR013767 PAS fold NIY04_07995 IPR035965 PAS domain superfamily NIY04_07995 IPR000014 PAS domain NIY04_07995 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily NIY04_07995 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain NIY04_07995 IPR005467 Histidine kinase domain NIY04_07995 IPR036890 Histidine kinase/HSP90-like ATPase superfamily NIY04_08005 IPR023404 Radical SAM, alpha/beta horseshoe NIY04_08005 IPR007197 Radical SAM NIY04_08005 IPR041582 RimO, TRAM domain NIY04_08005 IPR005840 Ribosomal protein S12 methylthiotransferase RimO NIY04_08005 IPR005839 Methylthiotransferase NIY04_08005 IPR013848 Methylthiotransferase, N-terminal NIY04_08005 IPR020612 Methylthiotransferase, conserved site NIY04_08005 IPR002792 TRAM domain NIY04_08005 IPR006638 Elp3/MiaB/NifB NIY04_08005 IPR038135 Methylthiotransferase, N-terminal domain superfamily NIY04_08010 IPR011817 Uridylate kinase NIY04_08010 IPR015963 Uridylate kinase, bacteria NIY04_08010 IPR036393 Acetylglutamate kinase-like superfamily NIY04_08010 IPR001048 Aspartate/glutamate/uridylate kinase NIY04_08015 IPR002661 Ribosome recycling factor NIY04_08015 IPR023584 Ribosome recycling factor domain NIY04_08015 IPR036191 RRF superfamily NIY04_08020 IPR001441 Decaprenyl diphosphate synthase-like NIY04_08020 IPR018520 Di-trans-poly-cis-decaprenylcistransferase-like, conserved site NIY04_08020 IPR036424 Decaprenyl diphosphate synthase-like superfamily NIY04_08025 IPR000374 Phosphatidate cytidylyltransferase NIY04_08030 IPR036291 NAD(P)-binding domain superfamily NIY04_08030 IPR036169 DXP reductoisomerase, C-terminal domain superfamily NIY04_08030 IPR026877 DXP reductoisomerase C-terminal domain NIY04_08030 IPR013512 1-deoxy-D-xylulose 5-phosphate reductoisomerase, N-terminal NIY04_08030 IPR003821 1-deoxy-D-xylulose 5-phosphate reductoisomerase NIY04_08030 IPR013644 1-deoxy-D-xylulose 5-phosphate reductoisomerase, C-terminal NIY04_08035 IPR008915 Peptidase M50 NIY04_08035 IPR004387 Peptidase M50, putative membrane-associated zinc metallopeptidase NIY04_08035 IPR036034 PDZ superfamily NIY04_08035 IPR001478 PDZ domain NIY04_08035 IPR041489 PDZ domain 6 NIY04_08040 IPR034746 POTRA domain NIY04_08040 IPR023707 Outer membrane protein assembly factor BamA NIY04_08040 IPR039910 Surface antigen D15-like NIY04_08040 IPR010827 POTRA domain, BamA/TamA-like NIY04_08040 IPR000184 Bacterial surface antigen (D15) NIY04_08050 IPR001451 Hexapeptide repeat NIY04_08050 IPR007691 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase LpxD NIY04_08050 IPR011004 Trimeric LpxA-like superfamily NIY04_08050 IPR020573 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, non-repeat region NIY04_08055 IPR013114 Beta-hydroxydecanoyl thiol ester dehydrase, FabA/FabZ NIY04_08055 IPR010084 Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabZ NIY04_08055 IPR029069 HotDog domain superfamily NIY04_08060 IPR001451 Hexapeptide repeat NIY04_08060 IPR029098 UDP N-acetylglucosamine O-acyltransferase, C-terminal NIY04_08060 IPR037157 UDP-N-acetylglucosamine O-acyltransferase, C-terminal domain superfamily NIY04_08060 IPR011004 Trimeric LpxA-like superfamily NIY04_08060 IPR018357 Hexapeptide transferase, conserved site NIY04_08060 IPR010137 Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase NIY04_08075 IPR003783 Regulatory protein RecX NIY04_08075 IPR036388 Winged helix-like DNA-binding domain superfamily NIY04_08080 IPR013765 DNA recombination and repair protein RecA NIY04_08080 IPR020584 DNA recombination/repair protein RecA, conserved site NIY04_08080 IPR003593 AAA+ ATPase domain NIY04_08080 IPR020587 DNA recombination and repair protein RecA, monomer-monomer interface NIY04_08080 IPR023400 DNA recombination and repair protein RecA, C-terminal NIY04_08080 IPR020588 DNA recombination and repair protein RecA-like, ATP-binding domain NIY04_08080 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIY04_08085 IPR036986 RNA-binding S4 domain superfamily NIY04_08085 IPR025708 Heat shock protein 15 NIY04_08085 IPR002942 RNA-binding S4 domain NIY04_08090 IPR036412 HAD-like superfamily NIY04_08090 IPR023214 HAD superfamily NIY04_08090 IPR041492 Haloacid dehalogenase-like hydrolase NIY04_08090 IPR006439 HAD hydrolase, subfamily IA NIY04_08115 IPR036388 Winged helix-like DNA-binding domain superfamily NIY04_08115 IPR019885 Transcription regulator HTH, AsnC-type, conserved site NIY04_08115 IPR036390 Winged helix DNA-binding domain superfamily NIY04_08115 IPR019888 Transcription regulator AsnC-type NIY04_08115 IPR011008 Dimeric alpha-beta barrel NIY04_08115 IPR000485 AsnC-type HTH domain NIY04_08115 IPR011991 ArsR-like helix-turn-helix domain NIY04_08115 IPR019887 Transcription regulator AsnC/Lrp, ligand binding domain NIY04_08120 IPR000192 Aminotransferase class V domain NIY04_08120 IPR010111 Kynureninase NIY04_08120 IPR015424 Pyridoxal phosphate-dependent transferase NIY04_08120 IPR015421 Pyridoxal phosphate-dependent transferase, major domain NIY04_08120 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 NIY04_08125 IPR004840 Amino acid permease, conserved site NIY04_08125 IPR004841 Amino acid permease/ SLC12A domain NIY04_08140 IPR037045 Peptidase S8 propeptide/proteinase inhibitor I9 superfamily NIY04_08140 IPR010259 Peptidase S8 propeptide/proteinase inhibitor I9 NIY04_08140 IPR015500 Peptidase S8, subtilisin-related NIY04_08140 IPR023828 Peptidase S8, subtilisin, Ser-active site NIY04_08140 IPR022398 Peptidase S8, subtilisin, His-active site NIY04_08140 IPR034193 Proteinase K-like catalytic domain NIY04_08140 IPR023827 Peptidase S8, subtilisin, Asp-active site NIY04_08140 IPR036852 Peptidase S8/S53 domain superfamily NIY04_08140 IPR000209 Peptidase S8/S53 domain NIY04_08145 IPR001902 SLC26A/SulP transporter NIY04_08145 IPR002645 STAS domain NIY04_08145 IPR036513 STAS domain superfamily NIY04_08145 IPR018045 Sulphate anion transporter, conserved site NIY04_08145 IPR011547 SLC26A/SulP transporter domain NIY04_08150 IPR003738 SOS response associated peptidase (SRAP) NIY04_08150 IPR036590 SOS response associated peptidase-like NIY04_08155 IPR012938 Glucose/Sorbosone dehydrogenase NIY04_08155 IPR011041 Soluble quinoprotein glucose/sorbosone dehydrogenase NIY04_08155 IPR019893 PQQ-dependent dehydrogenase, s-GDH family NIY04_08155 IPR011042 Six-bladed beta-propeller, TolB-like NIY04_08165 IPR035965 PAS domain superfamily NIY04_08165 IPR029787 Nucleotide cyclase NIY04_08165 IPR005330 MHYT domain NIY04_08165 IPR000160 GGDEF domain NIY04_08165 IPR035919 EAL domain superfamily NIY04_08165 IPR001633 EAL domain NIY04_08180 IPR013011 Phosphotransferase system, EIIB component, type 2 NIY04_08180 IPR003501 Phosphotransferase system, EIIB component, type 2/3 NIY04_08180 IPR003352 Phosphotransferase system, EIIC NIY04_08180 IPR013014 Phosphotransferase system, EIIC component, type 2 NIY04_08180 IPR003353 Phosphotransferase system, fructose-specific IIB subunit NIY04_08180 IPR006327 Phosphotransferase system, fructose IIC component NIY04_08180 IPR036095 PTS system IIB component-like superfamily NIY04_08185 IPR022463 Fructose 1-phosphate kinase NIY04_08185 IPR002173 Carbohydrate/puine kinase, PfkB, conserved site NIY04_08185 IPR011611 Carbohydrate kinase PfkB NIY04_08185 IPR029056 Ribokinase-like NIY04_08185 IPR017583 Tagatose/fructose phosphokinase NIY04_08190 IPR002178 PTS EIIA type-2 domain NIY04_08190 IPR000032 Phosphocarrier protein HPr-like NIY04_08190 IPR035895 HPr-like superfamily NIY04_08190 IPR008279 PEP-utilising enzyme, mobile domain NIY04_08190 IPR006318 Phosphotransferase system, enzyme I-like NIY04_08190 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain superfamily NIY04_08190 IPR001020 Phosphotransferase system, HPr histidine phosphorylation site NIY04_08190 IPR002114 Phosphotransferase system, HPr serine phosphorylation site NIY04_08190 IPR040442 Pyruvate kinase-like domain superfamily NIY04_08190 IPR018274 PEP-utilising enzyme, active site NIY04_08190 IPR000121 PEP-utilising enzyme, C-terminal NIY04_08190 IPR036618 PtsI, HPr-binding domain superfamily NIY04_08190 IPR023151 PEP-utilising enzyme, conserved site NIY04_08190 IPR016152 Phosphotransferase/anion transporter NIY04_08190 IPR008731 Phosphotransferase system, enzyme I N-terminal NIY04_08190 IPR036637 Phosphohistidine domain superfamily NIY04_08215 IPR004685 Branched-chain amino acid transport system II carrier protein NIY04_08220 IPR036005 Creatinase/aminopeptidase-like NIY04_08220 IPR001714 Peptidase M24, methionine aminopeptidase NIY04_08220 IPR002467 Peptidase M24A, methionine aminopeptidase, subfamily 1 NIY04_08220 IPR000994 Peptidase M24 NIY04_08225 IPR036388 Winged helix-like DNA-binding domain superfamily NIY04_08225 IPR000847 Transcription regulator HTH, LysR NIY04_08225 IPR005119 LysR, substrate-binding NIY04_08225 IPR036390 Winged helix DNA-binding domain superfamily NIY04_08235 IPR002109 Glutaredoxin NIY04_08235 IPR014434 Monothiol glutaredoxin NIY04_08235 IPR033658 Glutaredoxin, PICOT-like NIY04_08235 IPR036249 Thioredoxin-like superfamily NIY04_08235 IPR004480 Monothiol glutaredoxin-related NIY04_08240 IPR015421 Pyridoxal phosphate-dependent transferase, major domain NIY04_08240 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 NIY04_08240 IPR004636 Acetylornithine/Succinylornithine transaminase family NIY04_08240 IPR005814 Aminotransferase class-III NIY04_08240 IPR015424 Pyridoxal phosphate-dependent transferase NIY04_08245 IPR013785 Aldolase-type TIM barrel NIY04_08245 IPR000644 CBS domain NIY04_08245 IPR005990 Inosine-5'-monophosphate dehydrogenase NIY04_08245 IPR015875 IMP dehydrogenase / GMP reductase, conserved site NIY04_08245 IPR001093 IMP dehydrogenase/GMP reductase NIY04_08270 IPR000897 Signal recognition particle, SRP54 subunit, GTPase domain NIY04_08270 IPR003593 AAA+ ATPase domain NIY04_08270 IPR036225 SRP/SRP receptor, N-terminal NIY04_08270 IPR004390 Signal-recognition particle receptor FtsY NIY04_08270 IPR013822 Signal recognition particle SRP54, helical bundle NIY04_08270 IPR042101 Signal recognition particle SRP54, N-terminal domain superfamily NIY04_08270 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIY04_08280 IPR018635 Uncharacterised protein family UPF0319 NIY04_08295 IPR012994 Membrane bound YbgT-like NIY04_08295 IPR011724 Cyd operon protein YbgT NIY04_08300 IPR003317 Cytochrome ubiquinol oxidase subunit 2 NIY04_08305 IPR002585 Cytochrome ubiquinol oxidase subunit 1 NIY04_08315 IPR010840 Protein of unknown function DUF1449 NIY04_08325 IPR029056 Ribokinase-like NIY04_08325 IPR002173 Carbohydrate/puine kinase, PfkB, conserved site NIY04_08325 IPR011611 Carbohydrate kinase PfkB NIY04_08330 IPR010917 TonB-dependent receptor, conserved site NIY04_08330 IPR010105 TonB-dependent siderophore receptor NIY04_08330 IPR012910 TonB-dependent receptor, plug domain NIY04_08330 IPR000531 TonB-dependent receptor-like, beta-barrel NIY04_08330 IPR036942 TonB-dependent receptor-like, beta-barrel domain superfamily NIY04_08330 IPR039423 TonB-dependent receptor-like NIY04_08330 IPR037066 TonB-dependent receptor, plug domain superfamily NIY04_08335 IPR013578 Peptidase M16C associated NIY04_08335 IPR011249 Metalloenzyme, LuxS/M16 peptidase-like NIY04_08335 IPR011765 Peptidase M16, N-terminal NIY04_08335 IPR007863 Peptidase M16, C-terminal NIY04_08340 IPR036541 Phospholipase A1 superfamily NIY04_08340 IPR003187 Phospholipase A1 NIY04_08345 IPR004772 TrkH potassium transport family NIY04_08345 IPR003445 Cation transporter NIY04_08350 IPR036291 NAD(P)-binding domain superfamily NIY04_08350 IPR006037 Regulator of K+ conductance, C-terminal NIY04_08350 IPR003148 Regulator of K+ conductance, N-terminal NIY04_08350 IPR036721 Regulator of K+ conductance, C-terminal domain superfamily NIY04_08355 IPR001926 Pyridoxal-phosphate dependent enzyme NIY04_08355 IPR000634 Serine/threonine dehydratase, pyridoxal-phosphate-binding site NIY04_08355 IPR001721 Threonine dehydratase, ACT-like domain NIY04_08355 IPR036052 Tryptophan synthase beta subunit-like PLP-dependent enzyme NIY04_08355 IPR005787 Threonine dehydratase, biosynthetic NIY04_08355 IPR038110 Threonine dehydratase, ACT-like domain superfamily NIY04_08360 IPR004788 Ribose 5-phosphate isomerase, type A NIY04_08360 IPR037171 NagB/RpiA transferase-like NIY04_08360 IPR020672 Ribose-5-phosphate isomerase, type A, subgroup NIY04_08375 IPR012280 Semialdehyde dehydrogenase, dimerisation domain NIY04_08375 IPR000534 Semialdehyde dehydrogenase, NAD-binding NIY04_08375 IPR023013 N-acetyl-gamma-glutamyl-phosphate reductase, active site NIY04_08375 IPR000706 N-acetyl-gamma-glutamyl-phosphate reductase, type 1 NIY04_08375 IPR036291 NAD(P)-binding domain superfamily NIY04_08385 IPR014719 Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-like NIY04_08385 IPR003769 Adaptor protein ClpS, core NIY04_08385 IPR022935 ATP-dependent Clp protease adaptor protein ClpS NIY04_08390 IPR028299 ClpA/B, conserved site 2 NIY04_08390 IPR003593 AAA+ ATPase domain NIY04_08390 IPR003959 ATPase, AAA-type, core NIY04_08390 IPR019489 Clp ATPase, C-terminal NIY04_08390 IPR036628 Clp, N-terminal domain superfamily NIY04_08390 IPR018368 ClpA/B, conserved site 1 NIY04_08390 IPR013461 ATP-dependent Clp protease ATP-binding subunit ClpA NIY04_08390 IPR041546 ClpA/ClpB, AAA lid domain NIY04_08390 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIY04_08390 IPR001270 ClpA/B family NIY04_08390 IPR004176 Clp, N-terminal NIY04_08395 IPR003844 Uncharacterised protein family UPF0060 NIY04_08400 IPR013785 Aldolase-type TIM barrel NIY04_08400 IPR006218 DAHP synthetase I/KDSA NIY04_08400 IPR006219 DHAP synthase, class 1 NIY04_08415 IPR001155 NADH:flavin oxidoreductase/NADH oxidase, N-terminal NIY04_08415 IPR023753 FAD/NAD(P)-binding domain NIY04_08415 IPR036188 FAD/NAD(P)-binding domain superfamily NIY04_08415 IPR013785 Aldolase-type TIM barrel NIY04_08445 IPR017456 CTP synthase, N-terminal NIY04_08445 IPR004468 CTP synthase NIY04_08445 IPR029062 Class I glutamine amidotransferase-like NIY04_08445 IPR017926 Glutamine amidotransferase NIY04_08445 IPR033828 CTP synthase GATase domain NIY04_08445 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIY04_08450 IPR013785 Aldolase-type TIM barrel NIY04_08450 IPR006269 3-deoxy-8-phosphooctulonate synthase NIY04_08450 IPR006218 DAHP synthetase I/KDSA NIY04_08455 IPR029017 Enolase-like, N-terminal NIY04_08455 IPR020810 Enolase, C-terminal TIM barrel domain NIY04_08455 IPR000941 Enolase NIY04_08455 IPR036849 Enolase-like, C-terminal domain superfamily NIY04_08455 IPR020811 Enolase, N-terminal NIY04_08455 IPR020809 Enolase, conserved site NIY04_08460 IPR007353 Protein of unknown function DUF421 NIY04_08460 IPR023090 UPF0702, alpha/beta domain superfamily NIY04_08465 IPR023081 Cell division protein FtsB NIY04_08465 IPR007060 Septum formation initiator FtsL/DivIC NIY04_08470 IPR034683 Cytidylyltransferase IspD/TarI NIY04_08470 IPR018294 4-diphosphocytidyl-2C-methyl-D-erythritol synthase, conserved site NIY04_08470 IPR029044 Nucleotide-diphospho-sugar transferases NIY04_08470 IPR001228 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase NIY04_08475 IPR012792 3-oxoacid CoA-transferase, subunit A NIY04_08475 IPR004163 Coenzyme A transferase binding site NIY04_08475 IPR037171 NagB/RpiA transferase-like NIY04_08475 IPR004165 Coenzyme A transferase family I NIY04_08480 IPR037171 NagB/RpiA transferase-like NIY04_08480 IPR004164 Coenzyme A transferase active site NIY04_08480 IPR004165 Coenzyme A transferase family I NIY04_08480 IPR012791 3-oxoacid CoA-transferase, subunit B NIY04_08485 IPR020615 Thiolase, acyl-enzyme intermediate active site NIY04_08485 IPR016039 Thiolase-like NIY04_08485 IPR020616 Thiolase, N-terminal NIY04_08485 IPR020613 Thiolase, conserved site NIY04_08485 IPR020617 Thiolase, C-terminal NIY04_08485 IPR002155 Thiolase NIY04_08485 IPR012793 Beta-ketoadipyl CoA thiolase NIY04_08485 IPR020610 Thiolase, active site NIY04_08490 IPR020557 Fumarate lyase, conserved site NIY04_08490 IPR000362 Fumarate lyase family NIY04_08490 IPR022761 Fumarate lyase, N-terminal NIY04_08490 IPR008948 L-Aspartase-like NIY04_08490 IPR012789 3-carboxy-cis,cis-muconate cycloisomerase NIY04_08490 IPR019468 Adenylosuccinate lyase C-terminal NIY04_08490 IPR024083 Fumarase/histidase, N-terminal NIY04_08495 IPR000073 Alpha/beta hydrolase fold-1 NIY04_08495 IPR026968 3-oxoadipate enol-lactonase 1/2 NIY04_08495 IPR029058 Alpha/Beta hydrolase fold NIY04_08500 IPR011701 Major facilitator superfamily NIY04_08500 IPR004746 Major facilitator superfamily, aromatic acid:H+ symporter family NIY04_08500 IPR020846 Major facilitator superfamily domain NIY04_08500 IPR036259 MFS transporter superfamily NIY04_08500 IPR005829 Sugar transporter, conserved site NIY04_08505 IPR003779 Carboxymuconolactone decarboxylase-like NIY04_08505 IPR012788 4-carboxymuconolactone decarboxylase NIY04_08505 IPR029032 AhpD-like NIY04_08510 IPR000627 Intradiol ring-cleavage dioxygenase, C-terminal NIY04_08510 IPR012785 Protocatechuate 3,4-dioxygenase, beta subunit NIY04_08510 IPR024756 Protocatechuate 3,4-dioxygenase beta subunit, N-terminal NIY04_08510 IPR015889 Intradiol ring-cleavage dioxygenase, core NIY04_08515 IPR000627 Intradiol ring-cleavage dioxygenase, C-terminal NIY04_08515 IPR015889 Intradiol ring-cleavage dioxygenase, core NIY04_08515 IPR012786 Protocatechuate 3,4-dioxygenase, alpha subunit NIY04_08520 IPR018508 3-dehydroquinate dehydratase, active site NIY04_08520 IPR013785 Aldolase-type TIM barrel NIY04_08520 IPR001381 3-dehydroquinate dehydratase type I NIY04_08525 IPR011050 Pectin lyase fold/virulence factor NIY04_08525 IPR012334 Pectin lyase fold NIY04_08525 IPR007742 Periplasmic copper-binding protein NosD, beta helix domain NIY04_08525 IPR006626 Parallel beta-helix repeat NIY04_08530 IPR038673 Carbohydrate-selective porin OprB superfamily NIY04_08530 IPR007049 Carbohydrate-selective porin OprB NIY04_08535 IPR018391 Pyrrolo-quinoline quinone beta-propeller repeat NIY04_08535 IPR017511 PQQ-dependent membrane bound dehydrogenase NIY04_08535 IPR002372 Pyrrolo-quinoline quinone repeat NIY04_08535 IPR011047 Quinoprotein alcohol dehydrogenase-like superfamily NIY04_08535 IPR001479 Quinoprotein dehydrogenase, conserved site NIY04_08545 IPR007272 Sulphur transport domain NIY04_08555 IPR001279 Metallo-beta-lactamase NIY04_08555 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like NIY04_08560 IPR005471 Transcription regulator IclR, N-terminal NIY04_08560 IPR036390 Winged helix DNA-binding domain superfamily NIY04_08560 IPR029016 GAF-like domain superfamily NIY04_08560 IPR036388 Winged helix-like DNA-binding domain superfamily NIY04_08560 IPR012794 Beta-ketoadipate transcriptional regulator, PcaR/PcaU/PobR NIY04_08560 IPR014757 Transcription regulator IclR, C-terminal NIY04_08565 IPR037416 Nodulation protein D, PBP2 NIY04_08565 IPR036388 Winged helix-like DNA-binding domain superfamily NIY04_08565 IPR036390 Winged helix DNA-binding domain superfamily NIY04_08565 IPR005119 LysR, substrate-binding NIY04_08565 IPR000847 Transcription regulator HTH, LysR NIY04_08570 IPR006089 Acyl-CoA dehydrogenase, conserved site NIY04_08570 IPR006091 Acyl-CoA oxidase/dehydrogenase, central domain NIY04_08570 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal NIY04_08570 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal NIY04_08570 IPR037069 Acyl-CoA dehydrogenase/oxidase, N-terminal domain superfamily NIY04_08570 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily NIY04_08570 IPR036250 Acyl-CoA dehydrogenase-like, C-terminal NIY04_08585 IPR036291 NAD(P)-binding domain superfamily NIY04_08585 IPR020904 Short-chain dehydrogenase/reductase, conserved site NIY04_08585 IPR002347 Short-chain dehydrogenase/reductase SDR NIY04_08595 IPR011701 Major facilitator superfamily NIY04_08595 IPR020846 Major facilitator superfamily domain NIY04_08595 IPR036259 MFS transporter superfamily NIY04_08605 IPR020556 Amidase, conserved site NIY04_08605 IPR036928 Amidase signature (AS) superfamily NIY04_08605 IPR004412 Glutamyl-tRNA(Gln) amidotransferase A subunit NIY04_08605 IPR023631 Amidase signature domain NIY04_08605 IPR000120 Amidase NIY04_08610 IPR037069 Acyl-CoA dehydrogenase/oxidase, N-terminal domain superfamily NIY04_08610 IPR036250 Acyl-CoA dehydrogenase-like, C-terminal NIY04_08610 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily NIY04_08610 IPR013107 Acyl-CoA dehydrogenase, C-terminal domain NIY04_08625 IPR017639 Benzoate 1,2-dioxygenase, large subunit NIY04_08625 IPR017941 Rieske [2Fe-2S] iron-sulphur domain NIY04_08625 IPR036922 Rieske [2Fe-2S] iron-sulphur domain superfamily NIY04_08625 IPR015881 Aromatic-ring-hydroxylating dioxygenase, 2Fe-2S-binding site NIY04_08625 IPR015879 Aromatic-ring-hydroxylating dioxygenase, alpha subunit, C-terminal domain NIY04_08625 IPR001663 Aromatic-ring-hydroxylating dioxygenase, alpha subunit NIY04_08635 IPR011284 3-oxoacyl-(acyl-carrier-protein) reductase NIY04_08635 IPR036291 NAD(P)-binding domain superfamily NIY04_08635 IPR020904 Short-chain dehydrogenase/reductase, conserved site NIY04_08635 IPR002347 Short-chain dehydrogenase/reductase SDR NIY04_08640 IPR012675 Beta-grasp domain superfamily NIY04_08640 IPR017938 Riboflavin synthase-like beta-barrel NIY04_08640 IPR000951 Phthalate dioxygenase reductase NIY04_08640 IPR001433 Oxidoreductase FAD/NAD(P)-binding NIY04_08640 IPR039261 Ferredoxin-NADP reductase (FNR), nucleotide-binding domain NIY04_08640 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain NIY04_08640 IPR006058 2Fe-2S ferredoxin, iron-sulphur binding site NIY04_08640 IPR036010 2Fe-2S ferredoxin-like superfamily NIY04_08640 IPR017927 FAD-binding domain, ferredoxin reductase-type NIY04_08645 IPR036390 Winged helix DNA-binding domain superfamily NIY04_08645 IPR002563 Flavin reductase like domain NIY04_08645 IPR012349 FMN-binding split barrel NIY04_08645 IPR036388 Winged helix-like DNA-binding domain superfamily NIY04_08650 IPR018060 DNA binding HTH domain, AraC-type NIY04_08650 IPR037923 Transcription regulator HTH-like NIY04_08650 IPR003313 AraC-type arabinose-binding/dimerisation domain NIY04_08650 IPR020449 Transcription regulator HTH, AraC- type NIY04_08650 IPR009057 Homeobox-like domain superfamily NIY04_08650 IPR023609 Transcription regulator HTH, RhaS NIY04_08650 IPR014710 RmlC-like jelly roll fold NIY04_08655 IPR015798 Copper amine oxidase, catalytic domain NIY04_08655 IPR000269 Copper amine oxidase NIY04_08655 IPR012854 Copper amine oxidase-like, N-terminal NIY04_08655 IPR036460 Copper amine oxidase, catalytic domain superfamily NIY04_08655 IPR036582 Copper amine oxidase-like, N-terminal domain superfamily NIY04_08655 IPR015802 Copper amine oxidase, N3-terminal NIY04_08655 IPR015800 Copper amine oxidase, N2-terminal NIY04_08655 IPR016182 Copper amine oxidase, N-terminal NIY04_08665 IPR015590 Aldehyde dehydrogenase domain NIY04_08665 IPR016162 Aldehyde dehydrogenase, N-terminal NIY04_08665 IPR016163 Aldehyde dehydrogenase, C-terminal NIY04_08665 IPR016160 Aldehyde dehydrogenase, cysteine active site NIY04_08665 IPR029510 Aldehyde dehydrogenase, glutamic acid active site NIY04_08665 IPR016161 Aldehyde/histidinol dehydrogenase NIY04_08670 IPR029055 Nucleophile aminohydrolases, N-terminal NIY04_08670 IPR014395 Penicillin/GL-7-ACA/AHL acylase NIY04_08670 IPR023343 Penicillin amidase type, domain 1 NIY04_08670 IPR033813 Penicillin G acylase, C-terminal NIY04_08670 IPR002692 Penicillin/GL-7-ACA/AHL/aculeacin-A acylase NIY04_08675 IPR026968 3-oxoadipate enol-lactonase 1/2 NIY04_08675 IPR022742 Serine aminopeptidase, S33 NIY04_08675 IPR000073 Alpha/beta hydrolase fold-1 NIY04_08675 IPR029058 Alpha/Beta hydrolase fold NIY04_08680 IPR020617 Thiolase, C-terminal NIY04_08680 IPR020610 Thiolase, active site NIY04_08680 IPR020615 Thiolase, acyl-enzyme intermediate active site NIY04_08680 IPR016039 Thiolase-like NIY04_08680 IPR002155 Thiolase NIY04_08680 IPR012793 Beta-ketoadipyl CoA thiolase NIY04_08680 IPR020613 Thiolase, conserved site NIY04_08680 IPR020616 Thiolase, N-terminal NIY04_08685 IPR012791 3-oxoacid CoA-transferase, subunit B NIY04_08685 IPR004164 Coenzyme A transferase active site NIY04_08685 IPR037171 NagB/RpiA transferase-like NIY04_08685 IPR004165 Coenzyme A transferase family I NIY04_08690 IPR037171 NagB/RpiA transferase-like NIY04_08690 IPR004163 Coenzyme A transferase binding site NIY04_08690 IPR004165 Coenzyme A transferase family I NIY04_08690 IPR012792 3-oxoacid CoA-transferase, subunit A NIY04_08695 IPR015889 Intradiol ring-cleavage dioxygenase, core NIY04_08695 IPR000627 Intradiol ring-cleavage dioxygenase, C-terminal NIY04_08695 IPR012801 Catechol 1,2-dioxygenase, proteobacteria NIY04_08695 IPR007535 Catechol dioxygenase, N-terminal NIY04_08700 IPR003464 Muconolactone delta-isomerase NIY04_08700 IPR011008 Dimeric alpha-beta barrel NIY04_08700 IPR026029 Muconolactone isomerase domain NIY04_08705 IPR029065 Enolase C-terminal domain-like NIY04_08705 IPR013370 Muconate/chloromuconate cycloisomerase NIY04_08705 IPR013341 Mandelate racemase/muconate lactonizing enzyme, N-terminal domain NIY04_08705 IPR036849 Enolase-like, C-terminal domain superfamily NIY04_08705 IPR013342 Mandelate racemase/muconate lactonizing enzyme, C-terminal NIY04_08705 IPR018110 Mandelate racemase/muconate lactonizing enzyme, conserved site NIY04_08705 IPR029017 Enolase-like, N-terminal NIY04_08710 IPR036390 Winged helix DNA-binding domain superfamily NIY04_08710 IPR005119 LysR, substrate-binding NIY04_08710 IPR000847 Transcription regulator HTH, LysR NIY04_08710 IPR036388 Winged helix-like DNA-binding domain superfamily NIY04_08720 IPR036390 Winged helix DNA-binding domain superfamily NIY04_08720 IPR036388 Winged helix-like DNA-binding domain superfamily NIY04_08720 IPR011711 GntR, C-terminal NIY04_08720 IPR008920 Transcription regulator FadR/GntR, C-terminal NIY04_08720 IPR000524 Transcription regulator HTH, GntR NIY04_08725 IPR042096 Dihydroxy-acid dehydratase, C-terminal NIY04_08725 IPR000581 Dihydroxy-acid/6-phosphogluconate dehydratase NIY04_08725 IPR020558 Dihydroxy-acid/6-phosphogluconate dehydratase, conserved site NIY04_08725 IPR037237 IlvD/EDD, N-terminal domain NIY04_08730 IPR011701 Major facilitator superfamily NIY04_08730 IPR020846 Major facilitator superfamily domain NIY04_08730 IPR036259 MFS transporter superfamily NIY04_08740 IPR015590 Aldehyde dehydrogenase domain NIY04_08740 IPR016161 Aldehyde/histidinol dehydrogenase NIY04_08740 IPR016163 Aldehyde dehydrogenase, C-terminal NIY04_08740 IPR016162 Aldehyde dehydrogenase, N-terminal NIY04_08750 IPR000639 Epoxide hydrolase-like NIY04_08750 IPR000073 Alpha/beta hydrolase fold-1 NIY04_08750 IPR029058 Alpha/Beta hydrolase fold NIY04_08755 IPR036188 FAD/NAD(P)-binding domain superfamily NIY04_08755 IPR013785 Aldolase-type TIM barrel NIY04_08755 IPR023753 FAD/NAD(P)-binding domain NIY04_08755 IPR001155 NADH:flavin oxidoreductase/NADH oxidase, N-terminal NIY04_08760 IPR002347 Short-chain dehydrogenase/reductase SDR NIY04_08760 IPR036291 NAD(P)-binding domain superfamily NIY04_08765 IPR002734 Bacterial bifunctional deaminase-reductase, C-terminal NIY04_08765 IPR024072 Dihydrofolate reductase-like domain superfamily NIY04_08775 IPR011789 Cu(I)-responsive transcriptional regulator NIY04_08775 IPR009061 Putative DNA-binding domain superfamily NIY04_08775 IPR000551 MerR-type HTH domain NIY04_08785 IPR036188 FAD/NAD(P)-binding domain superfamily NIY04_08785 IPR023753 FAD/NAD(P)-binding domain NIY04_08795 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like NIY04_08795 IPR001279 Metallo-beta-lactamase NIY04_08795 IPR024884 N-acyl-phosphatidylethanolamine-hydrolysing phospholipase D NIY04_08800 IPR013570 Transcription regulator YsiA, C-terminal NIY04_08800 IPR001647 DNA-binding HTH domain, TetR-type NIY04_08800 IPR009057 Homeobox-like domain superfamily NIY04_08800 IPR036271 Tetracyclin repressor-like, C-terminal domain superfamily NIY04_08805 IPR036390 Winged helix DNA-binding domain superfamily NIY04_08805 IPR036388 Winged helix-like DNA-binding domain superfamily NIY04_08805 IPR000847 Transcription regulator HTH, LysR NIY04_08805 IPR037416 Nodulation protein D, PBP2 NIY04_08805 IPR005119 LysR, substrate-binding NIY04_08810 IPR020904 Short-chain dehydrogenase/reductase, conserved site NIY04_08810 IPR002347 Short-chain dehydrogenase/reductase SDR NIY04_08810 IPR036291 NAD(P)-binding domain superfamily NIY04_08815 IPR036291 NAD(P)-binding domain superfamily NIY04_08815 IPR002347 Short-chain dehydrogenase/reductase SDR NIY04_08815 IPR020904 Short-chain dehydrogenase/reductase, conserved site NIY04_08820 IPR036291 NAD(P)-binding domain superfamily NIY04_08820 IPR020904 Short-chain dehydrogenase/reductase, conserved site NIY04_08820 IPR002347 Short-chain dehydrogenase/reductase SDR NIY04_08825 IPR039375 Nodulation protein N-like NIY04_08825 IPR002539 MaoC-like dehydratase domain NIY04_08825 IPR029069 HotDog domain superfamily NIY04_08830 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal NIY04_08830 IPR006091 Acyl-CoA oxidase/dehydrogenase, central domain NIY04_08830 IPR025878 Acetyl-CoA dehydrogenase-like C-terminal domain NIY04_08830 IPR036250 Acyl-CoA dehydrogenase-like, C-terminal NIY04_08830 IPR037069 Acyl-CoA dehydrogenase/oxidase, N-terminal domain superfamily NIY04_08830 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal NIY04_08830 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily NIY04_08840 IPR020845 AMP-binding, conserved site NIY04_08840 IPR000873 AMP-dependent synthetase/ligase NIY04_08840 IPR042099 AMP-dependent synthetase-like superfamily NIY04_08840 IPR025110 AMP-binding enzyme, C-terminal domain NIY04_08895 IPR002110 Ankyrin repeat NIY04_08895 IPR020683 Ankyrin repeat-containing domain NIY04_08895 IPR036770 Ankyrin repeat-containing domain superfamily NIY04_08895 IPR018756 Domain of unknown function DUF2314 NIY04_08900 IPR011701 Major facilitator superfamily NIY04_08900 IPR020846 Major facilitator superfamily domain NIY04_08900 IPR036259 MFS transporter superfamily NIY04_08905 IPR032466 Metal-dependent hydrolase NIY04_08905 IPR006680 Amidohydrolase-related NIY04_08915 IPR000524 Transcription regulator HTH, GntR NIY04_08915 IPR011663 UbiC transcription regulator-associated NIY04_08915 IPR036388 Winged helix-like DNA-binding domain superfamily NIY04_08915 IPR036390 Winged helix DNA-binding domain superfamily NIY04_08915 IPR028978 Chorismate pyruvate-lyase/UbiC transcription regulator-associated domain superfamily NIY04_08920 IPR011042 Six-bladed beta-propeller, TolB-like NIY04_08920 IPR013658 SMP-30/Gluconolactonase/LRE-like region NIY04_08920 IPR005511 Senescence marker protein-30 (SMP-30) NIY04_08930 IPR036390 Winged helix DNA-binding domain superfamily NIY04_08930 IPR036388 Winged helix-like DNA-binding domain superfamily NIY04_08930 IPR000847 Transcription regulator HTH, LysR NIY04_08930 IPR005119 LysR, substrate-binding NIY04_08945 IPR032317 RND efflux pump, membrane fusion protein, barrel-sandwich domain NIY04_08945 IPR005694 Efflux pump membrane protein NIY04_08960 IPR016161 Aldehyde/histidinol dehydrogenase NIY04_08960 IPR016162 Aldehyde dehydrogenase, N-terminal NIY04_08960 IPR015590 Aldehyde dehydrogenase domain NIY04_08960 IPR016163 Aldehyde dehydrogenase, C-terminal NIY04_08965 IPR042096 Dihydroxy-acid dehydratase, C-terminal NIY04_08965 IPR000581 Dihydroxy-acid/6-phosphogluconate dehydratase NIY04_08965 IPR020558 Dihydroxy-acid/6-phosphogluconate dehydratase, conserved site NIY04_08965 IPR037237 IlvD/EDD, N-terminal domain NIY04_08975 IPR036388 Winged helix-like DNA-binding domain superfamily NIY04_08975 IPR005119 LysR, substrate-binding NIY04_08975 IPR000847 Transcription regulator HTH, LysR NIY04_08975 IPR036390 Winged helix DNA-binding domain superfamily NIY04_08980 IPR001509 NAD-dependent epimerase/dehydratase NIY04_08980 IPR036291 NAD(P)-binding domain superfamily NIY04_08985 IPR011701 Major facilitator superfamily NIY04_08985 IPR020846 Major facilitator superfamily domain NIY04_08985 IPR036259 MFS transporter superfamily NIY04_08990 IPR002204 3-hydroxyisobutyrate dehydrogenase-related, conserved site NIY04_08990 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily NIY04_08990 IPR013328 6-phosphogluconate dehydrogenase, domain 2 NIY04_08990 IPR006115 6-phosphogluconate dehydrogenase, NADP-binding NIY04_08990 IPR015815 3-hydroxyisobutyrate dehydrogenase-related NIY04_08990 IPR036291 NAD(P)-binding domain superfamily NIY04_08990 IPR029154 3-hydroxyisobutyrate dehydrogenase, NAD-binding domain NIY04_08990 IPR006398 2-hydroxy-3-oxopropionate reductase NIY04_08995 IPR009594 Transcription regulator HTH, AraC, N-terminal NIY04_08995 IPR018060 DNA binding HTH domain, AraC-type NIY04_08995 IPR009057 Homeobox-like domain superfamily NIY04_09000 IPR036291 NAD(P)-binding domain superfamily NIY04_09000 IPR011032 GroES-like superfamily NIY04_09000 IPR020843 Polyketide synthase, enoylreductase domain NIY04_09000 IPR013154 Alcohol dehydrogenase, N-terminal NIY04_09000 IPR013149 Alcohol dehydrogenase, C-terminal NIY04_09000 IPR002328 Alcohol dehydrogenase, zinc-type, conserved site NIY04_09010 IPR037294 ABC transporter, BtuC-like NIY04_09010 IPR000522 ABC transporter, permease protein, BtuC-like NIY04_09015 IPR003593 AAA+ ATPase domain NIY04_09015 IPR003439 ABC transporter-like NIY04_09015 IPR017871 ABC transporter, conserved site NIY04_09015 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIY04_09035 IPR037515 Ribose-phosphate pyrophosphokinase, bacterial-type NIY04_09035 IPR005946 Ribose-phosphate pyrophosphokinase NIY04_09035 IPR029057 Phosphoribosyltransferase-like NIY04_09035 IPR029099 Ribose-phosphate pyrophosphokinase, N-terminal domain NIY04_09035 IPR000842 Phosphoribosyl pyrophosphate synthetase, conserved site NIY04_09035 IPR000836 Phosphoribosyltransferase domain NIY04_09040 IPR013785 Aldolase-type TIM barrel NIY04_09040 IPR041525 Nicotinate/nicotinamide phosphoribosyltransferase NIY04_09040 IPR016471 Nicotinamide phosphoribosyl transferase NIY04_09040 IPR036068 Nicotinate phosphoribosyltransferase-like, C-terminal NIY04_09070 IPR036693 Transcription factor LuxR-like, autoinducer-binding domain superfamily NIY04_09070 IPR016032 Signal transduction response regulator, C-terminal effector NIY04_09070 IPR000792 Transcription regulator LuxR, C-terminal NIY04_09070 IPR005143 Transcription factor LuxR-like, autoinducer-binding domain NIY04_09070 IPR036388 Winged helix-like DNA-binding domain superfamily NIY04_09075 IPR000120 Amidase NIY04_09075 IPR020556 Amidase, conserved site NIY04_09075 IPR023631 Amidase signature domain NIY04_09075 IPR036928 Amidase signature (AS) superfamily NIY04_09085 IPR004638 Drug resistance transporter EmrB-like NIY04_09085 IPR011701 Major facilitator superfamily NIY04_09085 IPR020846 Major facilitator superfamily domain NIY04_09085 IPR036259 MFS transporter superfamily NIY04_09110 IPR036523 SurE-like phosphatase/nucleotidase superfamily NIY04_09110 IPR002828 Survival protein SurE-like phosphatase/nucleotidase NIY04_09110 IPR030048 Survival protein SurE NIY04_09120 IPR012675 Beta-grasp domain superfamily NIY04_09120 IPR002912 ACT domain NIY04_09120 IPR012676 TGS-like NIY04_09120 IPR007685 RelA/SpoT NIY04_09120 IPR004095 TGS NIY04_09120 IPR003607 HD/PDEase domain NIY04_09120 IPR033655 RelA, TGS domain NIY04_09120 IPR004811 RelA/SpoT family NIY04_09145 IPR010359 IrrE N-terminal-like domain NIY04_09155 IPR000182 GNAT domain NIY04_09155 IPR016181 Acyl-CoA N-acyltransferase NIY04_09185 IPR036291 NAD(P)-binding domain superfamily NIY04_09185 IPR020904 Short-chain dehydrogenase/reductase, conserved site NIY04_09185 IPR002347 Short-chain dehydrogenase/reductase SDR NIY04_09185 IPR023985 Mycofactocin-dependent oxidoreductase NIY04_09190 IPR036291 NAD(P)-binding domain superfamily NIY04_09190 IPR002347 Short-chain dehydrogenase/reductase SDR NIY04_09195 IPR029058 Alpha/Beta hydrolase fold NIY04_09195 IPR022742 Serine aminopeptidase, S33 NIY04_09200 IPR020449 Transcription regulator HTH, AraC- type NIY04_09200 IPR018062 HTH domain AraC-type, conserved site NIY04_09200 IPR018060 DNA binding HTH domain, AraC-type NIY04_09200 IPR037923 Transcription regulator HTH-like NIY04_09200 IPR003313 AraC-type arabinose-binding/dimerisation domain NIY04_09200 IPR009057 Homeobox-like domain superfamily NIY04_09205 IPR038404 TRAP transporter solute receptor DctP superfamily NIY04_09215 IPR032404 Two-component sensor protein CpxA, periplasmic domain NIY04_09215 IPR004358 Signal transduction histidine kinase-related protein, C-terminal NIY04_09215 IPR038515 CpxA, periplasmic domain superfamily NIY04_09215 IPR003660 HAMP domain NIY04_09215 IPR003594 Histidine kinase/HSP90-like ATPase NIY04_09215 IPR036890 Histidine kinase/HSP90-like ATPase superfamily NIY04_09215 IPR005467 Histidine kinase domain NIY04_09215 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain NIY04_09215 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily NIY04_09220 IPR001789 Signal transduction response regulator, receiver domain NIY04_09220 IPR001867 OmpR/PhoB-type DNA-binding domain NIY04_09220 IPR011006 CheY-like superfamily NIY04_09220 IPR036388 Winged helix-like DNA-binding domain superfamily NIY04_09220 IPR039420 Transcriptional regulatory protein WalR-like NIY04_09225 IPR032317 RND efflux pump, membrane fusion protein, barrel-sandwich domain NIY04_09225 IPR006143 RND efflux pump, membrane fusion protein NIY04_09230 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains NIY04_09230 IPR001036 Acriflavin resistance protein NIY04_09230 IPR004764 Hydrophobe/amphiphile efflux-1 HAE1 NIY04_09235 IPR041552 UvrA DNA-binding domain NIY04_09235 IPR017871 ABC transporter, conserved site NIY04_09235 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIY04_09235 IPR004602 UvrABC system subunit A NIY04_09235 IPR003439 ABC transporter-like NIY04_09235 IPR041102 UvrA, interaction domain NIY04_09310 IPR036937 Fimbrial-type adhesion domain superfamily NIY04_09310 IPR008966 Adhesion domain superfamily NIY04_09310 IPR039458 FimA-like NIY04_09315 IPR016147 Pili assembly chaperone, N-terminal NIY04_09315 IPR018046 Pili assembly chaperone, conserved site NIY04_09315 IPR001829 Pili assembly chaperone, bacterial NIY04_09315 IPR008962 PapD-like superfamily NIY04_09315 IPR013783 Immunoglobulin-like fold NIY04_09315 IPR036316 Pili assembly chaperone, C-terminal domain superfamily NIY04_09315 IPR016148 Pili assembly chaperone, C-terminal NIY04_09320 IPR000015 Outer membrane usher protein NIY04_09320 IPR018030 Fimbrial membrane usher, conserved site NIY04_09320 IPR042186 Outer membrane usher protein FimD, plug domain NIY04_09320 IPR025949 PapC-like, C-terminal domain NIY04_09320 IPR025885 PapC, N-terminal domain NIY04_09320 IPR037224 PapC, N-terminal domain superfamily NIY04_09335 IPR013149 Alcohol dehydrogenase, C-terminal NIY04_09335 IPR013154 Alcohol dehydrogenase, N-terminal NIY04_09335 IPR002328 Alcohol dehydrogenase, zinc-type, conserved site NIY04_09335 IPR011032 GroES-like superfamily NIY04_09335 IPR036291 NAD(P)-binding domain superfamily NIY04_09335 IPR020843 Polyketide synthase, enoylreductase domain NIY04_09335 IPR014183 Alcohol dehydrogenase class III NIY04_09345 IPR011614 Catalase core domain NIY04_09345 IPR020835 Catalase superfamily NIY04_09360 IPR030871 Cardiolipin synthase C NIY04_09360 IPR001736 Phospholipase D/Transphosphatidylase NIY04_09360 IPR025202 Phospholipase D-like domain NIY04_09375 IPR000180 Membrane dipeptidase, active site NIY04_09375 IPR032466 Metal-dependent hydrolase NIY04_09375 IPR008257 Peptidase M19 NIY04_09380 IPR023885 4Fe4S-binding SPASM domain NIY04_09380 IPR013785 Aldolase-type TIM barrel NIY04_09380 IPR006638 Elp3/MiaB/NifB NIY04_09380 IPR000385 MoaA/nifB/pqqE, iron-sulphur binding, conserved site NIY04_09380 IPR011843 Coenzyme PQQ biosynthesis protein E, bacteria NIY04_09380 IPR017200 Coenzyme PQQ synthesis protein E NIY04_09380 IPR007197 Radical SAM NIY04_09385 IPR008792 Coenzyme PQQ synthesis protein D NIY04_09385 IPR041881 Coenzyme PQQ synthesis protein D superfamily NIY04_09385 IPR022479 Coenzyme PQQ synthesis D, bacteria NIY04_09390 IPR016084 Haem oxygenase-like, multi-helical NIY04_09390 IPR011845 Coenzyme PQQ biosynthesis protein C NIY04_09390 IPR039068 Pyrroloquinoline-quinone synthase-like NIY04_09390 IPR004305 Thiaminase-2/PQQC NIY04_09395 IPR001279 Metallo-beta-lactamase NIY04_09395 IPR011842 Coenzyme PQQ biosynthesis protein B NIY04_09395 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like NIY04_09400 IPR011725 Coenzyme PQQ biosynthesis protein A NIY04_09405 IPR025198 Polyphosphate kinase N-terminal domain NIY04_09405 IPR003414 Polyphosphate kinase NIY04_09405 IPR024953 Polyphosphate kinase middle domain NIY04_09405 IPR041108 Polyphosphate kinase, C-terminal domain 1 NIY04_09405 IPR036830 Polyphosphate kinase middle domain superfamily NIY04_09405 IPR025200 Polyphosphate kinase C-terminal domain 2 NIY04_09405 IPR036832 Polyphosphate kinase N-terminal domain superfamily NIY04_09410 IPR029052 Metallo-dependent phosphatase-like NIY04_09410 IPR004843 Calcineurin-like phosphoesterase domain, ApaH type NIY04_09410 IPR006179 5'-Nucleotidase/apyrase NIY04_09420 IPR036736 ACP-like superfamily NIY04_09420 IPR016291 Isochorismatase NIY04_09420 IPR000868 Isochorismatase-like NIY04_09420 IPR036380 Isochorismatase-like superfamily NIY04_09420 IPR009081 Phosphopantetheine binding ACP domain NIY04_09425 IPR003560 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase NIY04_09425 IPR020904 Short-chain dehydrogenase/reductase, conserved site NIY04_09425 IPR002347 Short-chain dehydrogenase/reductase SDR NIY04_09425 IPR036291 NAD(P)-binding domain superfamily NIY04_09430 IPR004606 Molybdenum-pterin binding NIY04_09430 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIY04_09430 IPR005116 Transport-associated OB, type 1 NIY04_09430 IPR008995 Molybdate/tungstate binding, C-terminal NIY04_09430 IPR011868 Molybdate ABC transporter, ATP-binding protein NIY04_09430 IPR017871 ABC transporter, conserved site NIY04_09430 IPR003439 ABC transporter-like NIY04_09430 IPR003593 AAA+ ATPase domain NIY04_09430 IPR015852 ABC transporter, molybdenum import, ModC NIY04_09435 IPR011867 Molybdate ABC transporter, permease protein NIY04_09435 IPR035906 MetI-like superfamily NIY04_09435 IPR000515 ABC transporter type 1, transmembrane domain MetI-like NIY04_09440 IPR005950 Molybdate ABC transporter, substrate-binding protein NIY04_09445 IPR003725 Molybdenum-binding protein ModE, N-terminal NIY04_09445 IPR016462 Molybdate-dependent transcriptional regulator ModE NIY04_09445 IPR008995 Molybdate/tungstate binding, C-terminal NIY04_09445 IPR036390 Winged helix DNA-binding domain superfamily NIY04_09445 IPR036388 Winged helix-like DNA-binding domain superfamily NIY04_09445 IPR005116 Transport-associated OB, type 1 NIY04_09445 IPR000847 Transcription regulator HTH, LysR NIY04_09445 IPR004606 Molybdenum-pterin binding NIY04_09450 IPR036922 Rieske [2Fe-2S] iron-sulphur domain superfamily NIY04_09450 IPR017638 Anthranilate 1,2-dioxygenase, large subunit NIY04_09450 IPR017941 Rieske [2Fe-2S] iron-sulphur domain NIY04_09450 IPR015879 Aromatic-ring-hydroxylating dioxygenase, alpha subunit, C-terminal domain NIY04_09450 IPR015881 Aromatic-ring-hydroxylating dioxygenase, 2Fe-2S-binding site NIY04_09450 IPR001663 Aromatic-ring-hydroxylating dioxygenase, alpha subunit NIY04_09455 IPR032710 NTF2-like domain superfamily NIY04_09455 IPR000391 Ring-hydroxylating dioxygenase beta subunit NIY04_09455 IPR017640 Anthranilate 1,2-dioxygenase, small subunit NIY04_09460 IPR036010 2Fe-2S ferredoxin-like superfamily NIY04_09460 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain NIY04_09460 IPR012675 Beta-grasp domain superfamily NIY04_09460 IPR008333 Flavoprotein pyridine nucleotide cytochrome reductase-like, FAD-binding domain NIY04_09460 IPR017927 FAD-binding domain, ferredoxin reductase-type NIY04_09460 IPR039261 Ferredoxin-NADP reductase (FNR), nucleotide-binding domain NIY04_09460 IPR001433 Oxidoreductase FAD/NAD(P)-binding NIY04_09460 IPR017938 Riboflavin synthase-like beta-barrel NIY04_09460 IPR006058 2Fe-2S ferredoxin, iron-sulphur binding site NIY04_09465 IPR018060 DNA binding HTH domain, AraC-type NIY04_09465 IPR037923 Transcription regulator HTH-like NIY04_09465 IPR009057 Homeobox-like domain superfamily NIY04_09465 IPR035418 Transcription regulator HTH, AraC- type, ligand binding domain-like NIY04_09465 IPR018062 HTH domain AraC-type, conserved site NIY04_09475 IPR012349 FMN-binding split barrel NIY04_09475 IPR036390 Winged helix DNA-binding domain superfamily NIY04_09475 IPR036388 Winged helix-like DNA-binding domain superfamily NIY04_09475 IPR002563 Flavin reductase like domain NIY04_09485 IPR020904 Short-chain dehydrogenase/reductase, conserved site NIY04_09485 IPR002347 Short-chain dehydrogenase/reductase SDR NIY04_09485 IPR036291 NAD(P)-binding domain superfamily NIY04_09490 IPR002925 Dienelactone hydrolase NIY04_09490 IPR029058 Alpha/Beta hydrolase fold NIY04_09495 IPR011701 Major facilitator superfamily NIY04_09495 IPR036259 MFS transporter superfamily NIY04_09495 IPR004746 Major facilitator superfamily, aromatic acid:H+ symporter family NIY04_09495 IPR020846 Major facilitator superfamily domain NIY04_09495 IPR005829 Sugar transporter, conserved site NIY04_09500 IPR009057 Homeobox-like domain superfamily NIY04_09500 IPR018060 DNA binding HTH domain, AraC-type NIY04_09500 IPR009594 Transcription regulator HTH, AraC, N-terminal NIY04_09505 IPR011294 3-hydroxybutyrate dehydrogenase NIY04_09505 IPR020904 Short-chain dehydrogenase/reductase, conserved site NIY04_09505 IPR002347 Short-chain dehydrogenase/reductase SDR NIY04_09505 IPR036291 NAD(P)-binding domain superfamily NIY04_09510 IPR003474 Gluconate transporter NIY04_09520 IPR009057 Homeobox-like domain superfamily NIY04_09520 IPR001647 DNA-binding HTH domain, TetR-type NIY04_09520 IPR036271 Tetracyclin repressor-like, C-terminal domain superfamily NIY04_09545 IPR036390 Winged helix DNA-binding domain superfamily NIY04_09545 IPR036388 Winged helix-like DNA-binding domain superfamily NIY04_09545 IPR005119 LysR, substrate-binding NIY04_09545 IPR000847 Transcription regulator HTH, LysR NIY04_09550 IPR012792 3-oxoacid CoA-transferase, subunit A NIY04_09550 IPR004165 Coenzyme A transferase family I NIY04_09550 IPR004163 Coenzyme A transferase binding site NIY04_09550 IPR037171 NagB/RpiA transferase-like NIY04_09555 IPR037171 NagB/RpiA transferase-like NIY04_09555 IPR004164 Coenzyme A transferase active site NIY04_09555 IPR004165 Coenzyme A transferase family I NIY04_09555 IPR012791 3-oxoacid CoA-transferase, subunit B NIY04_09560 IPR006160 Short chain fatty acid transporter AtoE NIY04_09560 IPR006161 Conserved hypothetical protein CHP00336 NIY04_09565 IPR016039 Thiolase-like NIY04_09565 IPR002155 Thiolase NIY04_09565 IPR020610 Thiolase, active site NIY04_09565 IPR020617 Thiolase, C-terminal NIY04_09565 IPR020615 Thiolase, acyl-enzyme intermediate active site NIY04_09565 IPR020616 Thiolase, N-terminal NIY04_09565 IPR020613 Thiolase, conserved site NIY04_09570 IPR005119 LysR, substrate-binding NIY04_09570 IPR000847 Transcription regulator HTH, LysR NIY04_09570 IPR036388 Winged helix-like DNA-binding domain superfamily NIY04_09570 IPR036390 Winged helix DNA-binding domain superfamily NIY04_09575 IPR000847 Transcription regulator HTH, LysR NIY04_09575 IPR036388 Winged helix-like DNA-binding domain superfamily NIY04_09575 IPR036390 Winged helix DNA-binding domain superfamily NIY04_09575 IPR005119 LysR, substrate-binding NIY04_09590 IPR008948 L-Aspartase-like NIY04_09590 IPR004708 Aspartate ammonia-lyase NIY04_09590 IPR024083 Fumarase/histidase, N-terminal NIY04_09590 IPR018951 Fumarase C, C-terminal NIY04_09590 IPR020557 Fumarate lyase, conserved site NIY04_09590 IPR022761 Fumarate lyase, N-terminal NIY04_09590 IPR000362 Fumarate lyase family NIY04_09595 IPR000531 TonB-dependent receptor-like, beta-barrel NIY04_09595 IPR039423 TonB-dependent receptor-like NIY04_09595 IPR037066 TonB-dependent receptor, plug domain superfamily NIY04_09595 IPR012910 TonB-dependent receptor, plug domain NIY04_09595 IPR030149 TonB-dependent siderophore receptor FcuA/FatA NIY04_09595 IPR036942 TonB-dependent receptor-like, beta-barrel domain superfamily NIY04_09595 IPR010917 TonB-dependent receptor, conserved site NIY04_09595 IPR010105 TonB-dependent siderophore receptor NIY04_09595 IPR010916 TonB box, conserved site NIY04_09600 IPR005829 Sugar transporter, conserved site NIY04_09600 IPR004736 MFS transporter, metabolite:H symporter NIY04_09600 IPR020846 Major facilitator superfamily domain NIY04_09600 IPR005828 Major facilitator, sugar transporter-like NIY04_09600 IPR036259 MFS transporter superfamily NIY04_09615 IPR017871 ABC transporter, conserved site NIY04_09615 IPR003439 ABC transporter-like NIY04_09615 IPR003593 AAA+ ATPase domain NIY04_09615 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIY04_09615 IPR015859 ABC transporter, taurine import, TauD NIY04_09620 IPR035906 MetI-like superfamily NIY04_09620 IPR000515 ABC transporter type 1, transmembrane domain MetI-like NIY04_09625 IPR010068 Taurine ABC transporter, substrate-binding protein TauA NIY04_09625 IPR007210 ABC-type glycine betaine transport system, substrate-binding domain NIY04_09625 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF NIY04_09640 IPR036390 Winged helix DNA-binding domain superfamily NIY04_09640 IPR036388 Winged helix-like DNA-binding domain superfamily NIY04_09640 IPR011663 UbiC transcription regulator-associated NIY04_09640 IPR028978 Chorismate pyruvate-lyase/UbiC transcription regulator-associated domain superfamily NIY04_09640 IPR000524 Transcription regulator HTH, GntR NIY04_09645 IPR003370 Chromate transporter NIY04_09645 IPR014047 Chromate transporter, long chain NIY04_09650 IPR023048 NADH-azoreductase, FMN-dependent NIY04_09650 IPR029039 Flavoprotein-like superfamily NIY04_09650 IPR003680 Flavodoxin-like fold NIY04_09655 IPR036388 Winged helix-like DNA-binding domain superfamily NIY04_09655 IPR036390 Winged helix DNA-binding domain superfamily NIY04_09655 IPR002577 Helix-turn-helix, HxlR type NIY04_09660 IPR009057 Homeobox-like domain superfamily NIY04_09660 IPR010499 Bacterial transcription activator, effector binding NIY04_09660 IPR018062 HTH domain AraC-type, conserved site NIY04_09660 IPR011256 Regulatory factor, effector binding domain superfamily NIY04_09660 IPR020449 Transcription regulator HTH, AraC- type NIY04_09660 IPR029442 GyrI-like small molecule binding domain NIY04_09660 IPR018060 DNA binding HTH domain, AraC-type NIY04_09675 IPR002781 Transmembrane protein TauE-like NIY04_09690 IPR029021 Protein-tyrosine phosphatase-like NIY04_09690 IPR005939 Beta-lactamase hydrolase-like NIY04_09690 IPR001279 Metallo-beta-lactamase NIY04_09690 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like NIY04_09695 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIY04_09695 IPR002197 DNA binding HTH domain, Fis-type NIY04_09695 IPR003593 AAA+ ATPase domain NIY04_09695 IPR001789 Signal transduction response regulator, receiver domain NIY04_09695 IPR002078 RNA polymerase sigma factor 54 interaction domain NIY04_09695 IPR025943 Sigma-54 interaction domain, ATP-binding site 2 NIY04_09695 IPR025944 Sigma-54 interaction domain, conserved site NIY04_09695 IPR010114 DNA-binding transcriptional regulator NtrC NIY04_09695 IPR009057 Homeobox-like domain superfamily NIY04_09695 IPR011006 CheY-like superfamily NIY04_09700 IPR021134 Bestrophin/UPF0187 NIY04_09705 IPR013154 Alcohol dehydrogenase, N-terminal NIY04_09705 IPR002328 Alcohol dehydrogenase, zinc-type, conserved site NIY04_09705 IPR011032 GroES-like superfamily NIY04_09705 IPR036291 NAD(P)-binding domain superfamily NIY04_09705 IPR020843 Polyketide synthase, enoylreductase domain NIY04_09705 IPR013149 Alcohol dehydrogenase, C-terminal NIY04_09710 IPR036291 NAD(P)-binding domain superfamily NIY04_09710 IPR020904 Short-chain dehydrogenase/reductase, conserved site NIY04_09710 IPR002347 Short-chain dehydrogenase/reductase SDR NIY04_09710 IPR014007 Acetoin reductase NIY04_09715 IPR016156 FAD/NAD-linked reductase, dimerisation domain superfamily NIY04_09715 IPR006258 Dihydrolipoamide dehydrogenase NIY04_09715 IPR001100 Pyridine nucleotide-disulphide oxidoreductase, class I NIY04_09715 IPR004099 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain NIY04_09715 IPR036188 FAD/NAD(P)-binding domain superfamily NIY04_09715 IPR012999 Pyridine nucleotide-disulphide oxidoreductase, class I, active site NIY04_09715 IPR023753 FAD/NAD(P)-binding domain NIY04_09720 IPR001078 2-oxoacid dehydrogenase acyltransferase, catalytic domain NIY04_09720 IPR006257 Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex NIY04_09720 IPR003016 2-oxo acid dehydrogenase, lipoyl-binding site NIY04_09720 IPR000089 Biotin/lipoyl attachment NIY04_09720 IPR004167 Peripheral subunit-binding domain NIY04_09720 IPR036625 E3-binding domain superfamily NIY04_09720 IPR023213 Chloramphenicol acetyltransferase-like domain superfamily NIY04_09720 IPR011053 Single hybrid motif NIY04_09725 IPR029061 Thiamin diphosphate-binding fold NIY04_09725 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II NIY04_09725 IPR005475 Transketolase-like, pyrimidine-binding domain NIY04_09725 IPR033248 Transketolase, C-terminal domain NIY04_09730 IPR001017 Dehydrogenase, E1 component NIY04_09730 IPR029061 Thiamin diphosphate-binding fold NIY04_09735 IPR013785 Aldolase-type TIM barrel NIY04_09735 IPR006638 Elp3/MiaB/NifB NIY04_09735 IPR003698 Lipoyl synthase NIY04_09735 IPR007197 Radical SAM NIY04_09750 IPR013656 PAS fold-4 NIY04_09750 IPR035965 PAS domain superfamily NIY04_09750 IPR000700 PAS-associated, C-terminal NIY04_09750 IPR000014 PAS domain NIY04_09750 IPR029787 Nucleotide cyclase NIY04_09750 IPR000160 GGDEF domain NIY04_09755 IPR035904 Chorismate synthase AroC superfamily NIY04_09755 IPR020541 Chorismate synthase, conserved site NIY04_09755 IPR000453 Chorismate synthase NIY04_09760 IPR002052 DNA methylase, N-6 adenine-specific, conserved site NIY04_09760 IPR004556 Methyltransferase HemK-like NIY04_09760 IPR017127 Ribosomal protein L3-specific, glutamine-N5-methyltransferase NIY04_09760 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase NIY04_09760 IPR007848 Methyltransferase small domain NIY04_09765 IPR001926 Pyridoxal-phosphate dependent enzyme NIY04_09765 IPR006653 Tryptophan synthase, beta chain, conserved site NIY04_09765 IPR023026 Tryptophan synthase beta chain/beta chain-like NIY04_09765 IPR036052 Tryptophan synthase beta subunit-like PLP-dependent enzyme NIY04_09765 IPR006654 Tryptophan synthase, beta chain NIY04_09775 IPR003593 AAA+ ATPase domain NIY04_09775 IPR041569 AAA ATPase, AAA+ lid domain NIY04_09775 IPR003959 ATPase, AAA-type, core NIY04_09775 IPR003960 ATPase, AAA-type, conserved site NIY04_09775 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIY04_09775 IPR000642 Peptidase M41 NIY04_09775 IPR037219 Peptidase M41-like NIY04_09775 IPR005936 Peptidase, FtsH NIY04_09785 IPR038068 YcgL-like superfamily NIY04_09785 IPR027354 YcgL domain NIY04_09805 IPR002562 3'-5' exonuclease domain NIY04_09805 IPR010997 HRDC-like superfamily NIY04_09805 IPR002121 HRDC domain NIY04_09805 IPR006292 Ribonuclease D NIY04_09805 IPR036397 Ribonuclease H superfamily NIY04_09805 IPR012337 Ribonuclease H-like superfamily NIY04_09810 IPR023627 Recombination protein RecR NIY04_09810 IPR023628 Recombination protein RecR, C4-type zinc finger NIY04_09810 IPR015967 Recombination protein RecR, conserved site NIY04_09810 IPR006171 TOPRIM domain NIY04_09810 IPR034137 RecR, TOPRIM domain NIY04_09810 IPR000093 DNA recombination protein RecR NIY04_09815 IPR036894 Nucleoid-associated protein YbaB-like domain superfamily NIY04_09815 IPR004401 Nucleoid-associated protein YbaB/EbfC family NIY04_09825 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 NIY04_09825 IPR000277 Cys/Met metabolism, pyridoxal phosphate-dependent enzyme NIY04_09825 IPR006234 O-succinylhomoserine sulfhydrylase NIY04_09825 IPR015424 Pyridoxal phosphate-dependent transferase NIY04_09825 IPR015421 Pyridoxal phosphate-dependent transferase, major domain NIY04_09830 IPR029058 Alpha/Beta hydrolase fold NIY04_09830 IPR000073 Alpha/beta hydrolase fold-1 NIY04_09830 IPR010125 Poly(R)-hydroxyalkanoic acid synthase, class III, PhaC subunit NIY04_09835 IPR013216 Methyltransferase type 11 NIY04_09835 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase NIY04_09865 IPR011146 HIT-like domain NIY04_09865 IPR001310 Histidine triad (HIT) protein NIY04_09865 IPR036265 HIT-like superfamily NIY04_09865 IPR039384 HINT family NIY04_09865 IPR019808 Histidine triad, conserved site NIY04_09890 IPR000412 ABC-2 transporter NIY04_09895 IPR000412 ABC-2 transporter NIY04_09900 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIY04_09900 IPR003439 ABC transporter-like NIY04_09900 IPR017871 ABC transporter, conserved site NIY04_09900 IPR003593 AAA+ ATPase domain NIY04_09905 IPR032317 RND efflux pump, membrane fusion protein, barrel-sandwich domain NIY04_09915 IPR003835 Glycosyl transferase, family 19 NIY04_09920 IPR012910 TonB-dependent receptor, plug domain NIY04_09920 IPR037066 TonB-dependent receptor, plug domain superfamily NIY04_09920 IPR039423 TonB-dependent receptor-like NIY04_09920 IPR000531 TonB-dependent receptor-like, beta-barrel NIY04_09920 IPR010916 TonB box, conserved site NIY04_09920 IPR036942 TonB-dependent receptor-like, beta-barrel domain superfamily NIY04_09920 IPR010917 TonB-dependent receptor, conserved site NIY04_09920 IPR010105 TonB-dependent siderophore receptor NIY04_09940 IPR002781 Transmembrane protein TauE-like NIY04_09945 IPR006218 DAHP synthetase I/KDSA NIY04_09945 IPR013785 Aldolase-type TIM barrel NIY04_09945 IPR006219 DHAP synthase, class 1 NIY04_09950 IPR003805 Adenosylcobinamide-GDP ribazoletransferase NIY04_09960 IPR001345 Phosphoglycerate/bisphosphoglycerate mutase, active site NIY04_09960 IPR029033 Histidine phosphatase superfamily NIY04_09960 IPR013078 Histidine phosphatase superfamily, clade-1 NIY04_09965 IPR003200 Nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase-like NIY04_09965 IPR023195 Nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase, N-terminal NIY04_09965 IPR017846 Nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase, prokaryotic NIY04_09965 IPR036087 Nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase-like superfamily NIY04_09970 IPR003203 Cobinamide kinase/cobinamide phosphate guanyltransferase NIY04_09970 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIY04_09980 IPR010976 Beta-phosphoglucomutase hydrolase NIY04_09980 IPR036412 HAD-like superfamily NIY04_09980 IPR006439 HAD hydrolase, subfamily IA NIY04_09980 IPR041492 Haloacid dehalogenase-like hydrolase NIY04_09980 IPR023214 HAD superfamily NIY04_09980 IPR023198 Phosphoglycolate phosphatase-like, domain 2 NIY04_10005 IPR039426 Vitamin B12 transporter BtuB-like NIY04_10005 IPR012910 TonB-dependent receptor, plug domain NIY04_10005 IPR037066 TonB-dependent receptor, plug domain superfamily NIY04_10005 IPR010916 TonB box, conserved site NIY04_10005 IPR036942 TonB-dependent receptor-like, beta-barrel domain superfamily NIY04_10005 IPR010917 TonB-dependent receptor, conserved site NIY04_10005 IPR010105 TonB-dependent siderophore receptor NIY04_10005 IPR000531 TonB-dependent receptor-like, beta-barrel NIY04_10010 IPR014165 4-carboxy-4-hydroxy-2-oxoadipate aldolase/oxaloacetate decarboxylase NIY04_10010 IPR005493 Ribonuclease E inhibitor RraA/RraA-like protein NIY04_10010 IPR036704 Ribonuclease E inhibitor RraA/RraA-like superfamily NIY04_10020 IPR007310 Aerobactin siderophore biosynthesis, IucA/IucC, N-terminal NIY04_10020 IPR022770 Ferric iron reductase FhuF domain NIY04_10020 IPR037455 Aerobactin siderophore biosynthesis, IucA/IucC-like NIY04_10025 IPR037455 Aerobactin siderophore biosynthesis, IucA/IucC-like NIY04_10025 IPR007310 Aerobactin siderophore biosynthesis, IucA/IucC, N-terminal NIY04_10025 IPR022770 Ferric iron reductase FhuF domain NIY04_10030 IPR036259 MFS transporter superfamily NIY04_10030 IPR020846 Major facilitator superfamily domain NIY04_10030 IPR011701 Major facilitator superfamily NIY04_10035 IPR036188 FAD/NAD(P)-binding domain superfamily NIY04_10035 IPR025700 L-lysine 6-monooxygenase/L-ornithine 5-monooxygenase NIY04_10035 IPR031043 Putative histamine N-monooxygenase NIY04_10040 IPR007310 Aerobactin siderophore biosynthesis, IucA/IucC, N-terminal NIY04_10040 IPR037455 Aerobactin siderophore biosynthesis, IucA/IucC-like NIY04_10040 IPR022770 Ferric iron reductase FhuF domain NIY04_10045 IPR036754 YbaK/aminoacyl-tRNA synthetase-associated domain superfamily NIY04_10045 IPR007214 YbaK/aminoacyl-tRNA synthetase-associated domain NIY04_10045 IPR004369 Prolyl-tRNA editing protein, YbaK/EbsC NIY04_10055 IPR011009 Protein kinase-like domain superfamily NIY04_10055 IPR004147 UbiB domain NIY04_10060 IPR006091 Acyl-CoA oxidase/dehydrogenase, central domain NIY04_10060 IPR006089 Acyl-CoA dehydrogenase, conserved site NIY04_10060 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily NIY04_10060 IPR037069 Acyl-CoA dehydrogenase/oxidase, N-terminal domain superfamily NIY04_10060 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal NIY04_10060 IPR036250 Acyl-CoA dehydrogenase-like, C-terminal NIY04_10060 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal NIY04_10065 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily NIY04_10065 IPR037069 Acyl-CoA dehydrogenase/oxidase, N-terminal domain superfamily NIY04_10065 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal NIY04_10065 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal NIY04_10065 IPR036250 Acyl-CoA dehydrogenase-like, C-terminal NIY04_10065 IPR006091 Acyl-CoA oxidase/dehydrogenase, central domain NIY04_10065 IPR006089 Acyl-CoA dehydrogenase, conserved site NIY04_10070 IPR005804 Fatty acid desaturase domain NIY04_10070 IPR033885 Alkane/xylene monooxygenase NIY04_10075 IPR011051 RmlC-like cupin domain superfamily NIY04_10075 IPR009057 Homeobox-like domain superfamily NIY04_10075 IPR018060 DNA binding HTH domain, AraC-type NIY04_10075 IPR018062 HTH domain AraC-type, conserved site NIY04_10075 IPR020449 Transcription regulator HTH, AraC- type NIY04_10075 IPR014710 RmlC-like jelly roll fold NIY04_10075 IPR032783 AraC-type transcription regulator, ligand-binding domain NIY04_10080 IPR023058 Peptidyl-prolyl cis-trans isomerase, PpiC-type, conserved site NIY04_10080 IPR027304 Trigger factor/SurA domain superfamily NIY04_10080 IPR000297 Peptidyl-prolyl cis-trans isomerase, PpiC-type NIY04_10080 IPR015391 SurA N-terminal NIY04_10080 IPR023034 Peptidyl-prolyl isomerase SurA NIY04_10085 IPR000119 Histone-like DNA-binding protein NIY04_10085 IPR020816 Histone-like DNA-binding protein, conserved site NIY04_10085 IPR010992 Integration host factor (IHF)-like DNA-binding domain superfamily NIY04_10100 IPR010242 Transcription factor HTH, IscR NIY04_10100 IPR030489 Transcription regulator Rrf2-type, conserved site NIY04_10100 IPR000944 Transcription regulator Rrf2-type NIY04_10100 IPR036388 Winged helix-like DNA-binding domain superfamily NIY04_10100 IPR036390 Winged helix DNA-binding domain superfamily NIY04_10105 IPR015421 Pyridoxal phosphate-dependent transferase, major domain NIY04_10105 IPR000192 Aminotransferase class V domain NIY04_10105 IPR020578 Aminotransferase class-V, pyridoxal-phosphate binding site NIY04_10105 IPR016454 Cysteine desulfurase NIY04_10105 IPR010240 Cysteine desulfurase IscS NIY04_10105 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 NIY04_10105 IPR015424 Pyridoxal phosphate-dependent transferase NIY04_10110 IPR002871 NIF system FeS cluster assembly, NifU, N-terminal NIY04_10110 IPR011339 ISC system FeS cluster assembly, IscU scaffold NIY04_10115 IPR011302 Iron-binding protein IscA, proteobacteria NIY04_10115 IPR035903 HesB-like domain superfamily NIY04_10115 IPR017870 FeS cluster insertion, C-terminal, conserved site NIY04_10115 IPR016092 FeS cluster insertion protein NIY04_10115 IPR000361 FeS cluster biogenesis NIY04_10120 IPR004640 Co-chaperone Hsc20 NIY04_10120 IPR001623 DnaJ domain NIY04_10120 IPR036386 HscB, C-terminal domain superfamily NIY04_10120 IPR009073 Co-chaperone HscB, C-terminal oligomerisation domain NIY04_10120 IPR036869 Chaperone J-domain superfamily NIY04_10125 IPR042039 HscA chaperone, nucleotide-binding domain NIY04_10125 IPR010236 ISC system FeS cluster assembly, HscA chaperone NIY04_10125 IPR013126 Heat shock protein 70 family NIY04_10125 IPR029047 Heat shock protein 70kD, peptide-binding domain superfamily NIY04_10125 IPR029048 Heat shock protein 70kD, C-terminal domain superfamily NIY04_10125 IPR018181 Heat shock protein 70, conserved site NIY04_10130 IPR001055 Adrenodoxin NIY04_10130 IPR018298 Adrenodoxin, iron-sulphur binding site NIY04_10130 IPR012675 Beta-grasp domain superfamily NIY04_10130 IPR011536 Ferredoxin 2Fe-2S type, proteobacteria NIY04_10130 IPR036010 2Fe-2S ferredoxin-like superfamily NIY04_10130 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain NIY04_10135 IPR001054 Adenylyl cyclase class-3/4/guanylyl cyclase NIY04_10135 IPR029787 Nucleotide cyclase NIY04_10145 IPR041471 UvrB, interaction domain NIY04_10145 IPR004576 Transcription-repair coupling factor NIY04_10145 IPR037235 TRCF-like, C-terminal domain NIY04_10145 IPR011545 DEAD/DEAH box helicase domain NIY04_10145 IPR003711 CarD-like/TRCF domain NIY04_10145 IPR005118 Transcription-repair-coupling factor, C-terminal domain NIY04_10145 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIY04_10145 IPR036101 CarD-like/TRCF domain superfamily NIY04_10145 IPR014001 Helicase superfamily 1/2, ATP-binding domain NIY04_10145 IPR001650 Helicase, C-terminal NIY04_10165 IPR036704 Ribonuclease E inhibitor RraA/RraA-like superfamily NIY04_10165 IPR005493 Ribonuclease E inhibitor RraA/RraA-like protein NIY04_10165 IPR010203 Regulator of ribonuclease activity A NIY04_10170 IPR000534 Semialdehyde dehydrogenase, NAD-binding NIY04_10170 IPR036291 NAD(P)-binding domain superfamily NIY04_10170 IPR016040 NAD(P)-binding domain NIY04_10175 IPR036510 Ribosomal protein S20 superfamily NIY04_10175 IPR002583 Ribosomal protein S20 NIY04_10185 IPR020583 Inositol monophosphatase, metal-binding site NIY04_10185 IPR000760 Inositol monophosphatase-like NIY04_10185 IPR020550 Inositol monophosphatase, conserved site NIY04_10185 IPR006240 3'(2'),5'-bisphosphate nucleotidase CysQ NIY04_10200 IPR003439 ABC transporter-like NIY04_10200 IPR003593 AAA+ ATPase domain NIY04_10200 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIY04_10200 IPR017871 ABC transporter, conserved site NIY04_10200 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal NIY04_10205 IPR035906 MetI-like superfamily NIY04_10205 IPR000515 ABC transporter type 1, transmembrane domain MetI-like NIY04_10210 IPR000515 ABC transporter type 1, transmembrane domain MetI-like NIY04_10210 IPR035906 MetI-like superfamily NIY04_10215 IPR024077 Neurolysin/Thimet oligopeptidase, domain 2 NIY04_10215 IPR001567 Peptidase M3A/M3B catalytic domain NIY04_10235 IPR000531 TonB-dependent receptor-like, beta-barrel NIY04_10235 IPR010917 TonB-dependent receptor, conserved site NIY04_10235 IPR036942 TonB-dependent receptor-like, beta-barrel domain superfamily NIY04_10235 IPR010916 TonB box, conserved site NIY04_10235 IPR039426 Vitamin B12 transporter BtuB-like NIY04_10235 IPR012910 TonB-dependent receptor, plug domain NIY04_10235 IPR037066 TonB-dependent receptor, plug domain superfamily NIY04_10235 IPR010101 TonB-dependent vitamin B12 transporter BtuB NIY04_10245 IPR002898 MotA/TolQ/ExbB proton channel NIY04_10250 IPR003400 Biopolymer transport protein ExbD/TolR NIY04_10255 IPR003400 Biopolymer transport protein ExbD/TolR NIY04_10265 IPR011076 Malate synthase-like superfamily NIY04_10265 IPR023310 Malate synthase G, beta sub-domain NIY04_10265 IPR001465 Malate synthase NIY04_10265 IPR006253 Malate synthase G NIY04_10385 IPR006944 Bacteriophage/Gene transfer agent portal protein NIY04_10545 IPR004107 Integrase, SAM-like, N-terminal NIY04_10545 IPR023009 Tyrosine recombinase XerC/XerD NIY04_10545 IPR011931 Tyrosine recombinase XerC NIY04_10545 IPR002104 Integrase, catalytic domain NIY04_10545 IPR013762 Integrase-like, catalytic domain superfamily NIY04_10545 IPR011010 DNA breaking-rejoining enzyme, catalytic core NIY04_10545 IPR010998 Integrase/recombinase, N-terminal NIY04_10550 IPR005654 ATPase, AFG1-like NIY04_10550 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIY04_10550 IPR030870 Cell division protein ZapE NIY04_10560 IPR036188 FAD/NAD(P)-binding domain superfamily NIY04_10560 IPR020946 Flavin monooxygenase-like NIY04_10570 IPR014732 Orotidine 5'-phosphate decarboxylase NIY04_10570 IPR018089 Orotidine 5'-phosphate decarboxylase, active site NIY04_10570 IPR011060 Ribulose-phosphate binding barrel NIY04_10570 IPR013785 Aldolase-type TIM barrel NIY04_10570 IPR001754 Orotidine 5'-phosphate decarboxylase domain NIY04_10580 IPR000119 Histone-like DNA-binding protein NIY04_10580 IPR020816 Histone-like DNA-binding protein, conserved site NIY04_10580 IPR010992 Integration host factor (IHF)-like DNA-binding domain superfamily NIY04_10580 IPR005685 Integration host factor, beta subunit NIY04_10585 IPR012340 Nucleic acid-binding, OB-fold NIY04_10585 IPR000110 Ribosomal protein S1 NIY04_10585 IPR022967 RNA-binding domain, S1 NIY04_10585 IPR003029 S1 domain NIY04_10590 IPR011994 Cytidylate kinase domain NIY04_10590 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIY04_10590 IPR003136 Cytidylate kinase NIY04_10600 IPR028883 tRNA-specific adenosine deaminase NIY04_10600 IPR016193 Cytidine deaminase-like NIY04_10600 IPR002125 Cytidine and deoxycytidylate deaminase domain NIY04_10600 IPR016192 APOBEC/CMP deaminase, zinc-binding NIY04_10610 IPR005122 Uracil-DNA glycosylase-like NIY04_10610 IPR018085 Uracil-DNA glycosylase, active site NIY04_10610 IPR002043 Uracil-DNA glycosylase family 1 NIY04_10610 IPR036895 Uracil-DNA glycosylase-like domain superfamily NIY04_10620 IPR005628 General secretion pathway protein K NIY04_10620 IPR038072 GspK, central domain superfamily NIY04_10625 IPR012902 Prokaryotic N-terminal methylation site NIY04_10625 IPR010055 Type II secretion system protein J NIY04_10630 IPR012902 Prokaryotic N-terminal methylation site NIY04_10630 IPR003413 Type II secretion system protein I domain NIY04_10630 IPR010052 Type II secretion system protein I NIY04_10645 IPR018228 Deoxyribonuclease, TatD-related, conserved site NIY04_10645 IPR032466 Metal-dependent hydrolase NIY04_10645 IPR001130 TatD family NIY04_10645 IPR015991 Uncharacterised hydrolase TatD-type NIY04_10655 IPR004622 DNA polymerase III, delta prime subunit NIY04_10655 IPR015199 DNA polymerase III, delta subunit, C-terminal NIY04_10655 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIY04_10660 IPR003329 Acylneuraminate cytidylyltransferase NIY04_10660 IPR029044 Nucleotide-diphospho-sugar transferases NIY04_10660 IPR004528 3-deoxy-D-manno-octulosonate cytidylyltransferase NIY04_10665 IPR003758 Tetraacyldisaccharide 4'-kinase NIY04_10665 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIY04_10670 IPR011917 ABC transporter, lipid A export, MsbA NIY04_10670 IPR017871 ABC transporter, conserved site NIY04_10670 IPR003439 ABC transporter-like NIY04_10670 IPR036640 ABC transporter type 1, transmembrane domain superfamily NIY04_10670 IPR011527 ABC transporter type 1, transmembrane domain NIY04_10670 IPR003593 AAA+ ATPase domain NIY04_10670 IPR039421 Type I protein exporter NIY04_10670 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIY04_10680 IPR002898 MotA/TolQ/ExbB proton channel NIY04_10685 IPR036086 ParB/Sulfiredoxin superfamily NIY04_10685 IPR003115 ParB/Sulfiredoxin NIY04_10685 IPR004437 ParB/RepB/Spo0J partition protein NIY04_10685 IPR041468 ParB/Spo0J, HTH domain NIY04_10690 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIY04_10690 IPR025669 AAA domain NIY04_10695 IPR003682 rRNA small subunit methyltransferase G NIY04_10695 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase NIY04_10700 IPR005835 Nucleotidyl transferase domain NIY04_10700 IPR029044 Nucleotide-diphospho-sugar transferases NIY04_10705 IPR002575 Aminoglycoside phosphotransferase NIY04_10705 IPR011009 Protein kinase-like domain superfamily NIY04_10710 IPR020889 LPS-assembly protein LptD NIY04_10710 IPR007543 LptD, C-terminal NIY04_10710 IPR005653 Organic solvent tolerance-like, N-terminal NIY04_10715 IPR000297 Peptidyl-prolyl cis-trans isomerase, PpiC-type NIY04_10715 IPR023034 Peptidyl-prolyl isomerase SurA NIY04_10715 IPR015391 SurA N-terminal NIY04_10715 IPR027304 Trigger factor/SurA domain superfamily NIY04_10720 IPR013785 Aldolase-type TIM barrel NIY04_10720 IPR000771 Fructose-bisphosphate aldolase, class-II NIY04_10720 IPR006412 Fructose-bisphosphate aldolase, class II, Calvin cycle subtype NIY04_10730 IPR001576 Phosphoglycerate kinase NIY04_10730 IPR036043 Phosphoglycerate kinase superfamily NIY04_10730 IPR015824 Phosphoglycerate kinase, N-terminal NIY04_10730 IPR015911 Phosphoglycerate kinase, conserved site NIY04_10740 IPR003697 Nucleoside triphosphate pyrophosphatase Maf-like protein NIY04_10740 IPR029001 Inosine triphosphate pyrophosphatase-like NIY04_10745 IPR039994 JmjC domain-containing NIY04_10745 IPR003347 JmjC domain NIY04_10755 IPR036390 Winged helix DNA-binding domain superfamily NIY04_10755 IPR001845 HTH ArsR-type DNA-binding domain NIY04_10755 IPR011991 ArsR-like helix-turn-helix domain NIY04_10755 IPR036388 Winged helix-like DNA-binding domain superfamily NIY04_10760 IPR023025 Serine/threonine transporter SstT NIY04_10760 IPR001991 Sodium:dicarboxylate symporter NIY04_10760 IPR036458 Sodium:dicarboxylate symporter superfamily NIY04_10765 IPR010699 Protein of unknown function DUF1275 NIY04_10770 IPR018636 Protein of unknown function DUF2058 NIY04_10775 IPR003593 AAA+ ATPase domain NIY04_10775 IPR036640 ABC transporter type 1, transmembrane domain superfamily NIY04_10775 IPR003439 ABC transporter-like NIY04_10775 IPR017871 ABC transporter, conserved site NIY04_10775 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIY04_10775 IPR039421 Type I protein exporter NIY04_10775 IPR011527 ABC transporter type 1, transmembrane domain NIY04_10785 IPR032687 HTH-type transcriptional regulator AraC-type, N-terminal NIY04_10785 IPR020449 Transcription regulator HTH, AraC- type NIY04_10785 IPR018060 DNA binding HTH domain, AraC-type NIY04_10785 IPR009057 Homeobox-like domain superfamily NIY04_10790 IPR033753 Glycine cleavage system H-protein/Simiate NIY04_10790 IPR002930 Glycine cleavage system H-protein NIY04_10790 IPR000089 Biotin/lipoyl attachment NIY04_10790 IPR003016 2-oxo acid dehydrogenase, lipoyl-binding site NIY04_10790 IPR017453 Glycine cleavage system H-protein, subgroup NIY04_10790 IPR011053 Single hybrid motif NIY04_10795 IPR026590 Sirtuin family, catalytic core domain NIY04_10795 IPR029035 DHS-like NAD/FAD-binding domain superfamily NIY04_10795 IPR027546 Sirtuin, class III NIY04_10795 IPR026591 Sirtuin, catalytic core small domain superfamily NIY04_10795 IPR003000 Sirtuin family NIY04_10800 IPR001734 Sodium/solute symporter NIY04_10800 IPR011851 Sodium/proline symporter NIY04_10800 IPR038377 Sodium/glucose symporter superfamily NIY04_10800 IPR018212 Sodium/solute symporter, conserved site NIY04_10805 IPR036388 Winged helix-like DNA-binding domain superfamily NIY04_10805 IPR011991 ArsR-like helix-turn-helix domain NIY04_10805 IPR000485 AsnC-type HTH domain NIY04_10805 IPR011008 Dimeric alpha-beta barrel NIY04_10805 IPR019888 Transcription regulator AsnC-type NIY04_10805 IPR019887 Transcription regulator AsnC/Lrp, ligand binding domain NIY04_10805 IPR019885 Transcription regulator HTH, AsnC-type, conserved site NIY04_10805 IPR036390 Winged helix DNA-binding domain superfamily NIY04_10810 IPR010985 Ribbon-helix-helix NIY04_10810 IPR029041 FAD-linked oxidoreductase-like NIY04_10810 IPR002872 Proline dehydrogenase domain NIY04_10810 IPR024082 Proline dehydrogenase PutA, domain II NIY04_10810 IPR024089 Proline dehydrogenase PutA, domain I/II NIY04_10810 IPR024090 Proline dehydrogenase PutA, domain I NIY04_10810 IPR041349 Proline utilization A proline dehydrogenase N-terminal domain NIY04_10810 IPR005933 Delta-1-pyrroline-5-carboxylate dehydrogenase 3 NIY04_10810 IPR013321 Arc-type ribbon-helix-helix NIY04_10810 IPR015590 Aldehyde dehydrogenase domain NIY04_10810 IPR016162 Aldehyde dehydrogenase, N-terminal NIY04_10810 IPR029510 Aldehyde dehydrogenase, glutamic acid active site NIY04_10810 IPR016160 Aldehyde dehydrogenase, cysteine active site NIY04_10810 IPR016163 Aldehyde dehydrogenase, C-terminal NIY04_10810 IPR016161 Aldehyde/histidinol dehydrogenase NIY04_10810 IPR025703 Bifunctional protein PutA NIY04_10815 IPR007344 GrpB/Dephospho-CoA kinase NIY04_10820 IPR011869 tRNA/tmRNA (uracil-C(5))-methyltransferase, TrmA NIY04_10820 IPR030390 RNA methyltransferase TrmA, active site NIY04_10820 IPR030391 RNA methyltransferase TrmA, conserved site NIY04_10820 IPR010280 (Uracil-5)-methyltransferase family NIY04_10820 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase NIY04_10830 IPR018711 Phosphodiester glycosidase NIY04_10840 IPR023480 Uncharacterised protein family UPF0312/YceI NIY04_10840 IPR036761 Lipid/polyisoprenoid-binding, YceI-like superfamily NIY04_10840 IPR007372 Lipid/polyisoprenoid-binding, YceI-like NIY04_10850 IPR005478 Transketolase, bacterial-like NIY04_10850 IPR005474 Transketolase, N-terminal NIY04_10850 IPR033247 Transketolase family NIY04_10850 IPR033248 Transketolase, C-terminal domain NIY04_10850 IPR020826 Transketolase binding site NIY04_10850 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II NIY04_10850 IPR029061 Thiamin diphosphate-binding fold NIY04_10850 IPR005475 Transketolase-like, pyrimidine-binding domain NIY04_10855 IPR022631 S-adenosylmethionine synthetase, conserved site NIY04_10855 IPR022630 S-adenosylmethionine synthetase, C-terminal NIY04_10855 IPR022629 S-adenosylmethionine synthetase, central domain NIY04_10855 IPR022628 S-adenosylmethionine synthetase, N-terminal NIY04_10855 IPR002133 S-adenosylmethionine synthetase NIY04_10855 IPR022636 S-adenosylmethionine synthetase superfamily NIY04_10875 IPR012338 Beta-lactamase/transpeptidase-like NIY04_10875 IPR001460 Penicillin-binding protein, transpeptidase NIY04_10880 IPR000182 GNAT domain NIY04_10880 IPR016181 Acyl-CoA N-acyltransferase NIY04_10890 IPR012337 Ribonuclease H-like superfamily NIY04_10890 IPR036397 Ribonuclease H superfamily NIY04_10890 IPR020563 Crossover junction endodeoxyribonuclease RuvC, magnesium-binding site NIY04_10890 IPR002176 Crossover junction endodeoxyribonuclease RuvC NIY04_10895 IPR000631 ATP-dependent (S)-NAD(P)H-hydrate dehydratase NIY04_10895 IPR030677 Bifunctional NAD(P)H-hydrate repair enzyme Nnr NIY04_10895 IPR029056 Ribokinase-like NIY04_10895 IPR004443 YjeF N-terminal domain NIY04_10895 IPR036652 YjeF N-terminal domain superfamily NIY04_10900 IPR004453 Epoxyqueuosine reductase QueG NIY04_10900 IPR009051 Alpha-helical ferredoxin NIY04_10900 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain NIY04_10900 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site NIY04_10900 IPR013542 Domain of unknown function DUF1730 NIY04_10905 IPR007197 Radical SAM NIY04_10905 IPR006638 Elp3/MiaB/NifB NIY04_10905 IPR024177 Biotin synthase NIY04_10905 IPR013785 Aldolase-type TIM barrel NIY04_10905 IPR010722 Biotin and thiamin synthesis-associated domain NIY04_10905 IPR002684 Biotin synthase/Biotin biosynthesis bifunctional protein BioAB NIY04_10920 IPR008966 Adhesion domain superfamily NIY04_10920 IPR039458 FimA-like NIY04_10920 IPR036937 Fimbrial-type adhesion domain superfamily NIY04_10925 IPR018046 Pili assembly chaperone, conserved site NIY04_10925 IPR016147 Pili assembly chaperone, N-terminal NIY04_10925 IPR001829 Pili assembly chaperone, bacterial NIY04_10925 IPR036316 Pili assembly chaperone, C-terminal domain superfamily NIY04_10925 IPR013783 Immunoglobulin-like fold NIY04_10925 IPR008962 PapD-like superfamily NIY04_10925 IPR016148 Pili assembly chaperone, C-terminal NIY04_10930 IPR000015 Outer membrane usher protein NIY04_10930 IPR018030 Fimbrial membrane usher, conserved site NIY04_10930 IPR042186 Outer membrane usher protein FimD, plug domain NIY04_10930 IPR025949 PapC-like, C-terminal domain NIY04_10930 IPR025885 PapC, N-terminal domain NIY04_10930 IPR037224 PapC, N-terminal domain superfamily NIY04_10950 IPR000620 EamA domain NIY04_10960 IPR038271 Purine-cytosine permease superfamily NIY04_10960 IPR001248 Purine-cytosine permease NIY04_10960 IPR026030 Purine-cytosine permease Fcy2/21/22 NIY04_10970 IPR005119 LysR, substrate-binding NIY04_10970 IPR000847 Transcription regulator HTH, LysR NIY04_10970 IPR036390 Winged helix DNA-binding domain superfamily NIY04_10970 IPR036388 Winged helix-like DNA-binding domain superfamily NIY04_10990 IPR001647 DNA-binding HTH domain, TetR-type NIY04_10990 IPR023772 DNA-binding HTH domain, TetR-type, conserved site NIY04_10990 IPR009057 Homeobox-like domain superfamily NIY04_11000 IPR029072 YebC-like NIY04_11000 IPR026564 Transcriptional regulator TACO1-like, domain 3 NIY04_11000 IPR002876 Transcriptional regulator TACO1-like NIY04_11000 IPR017856 Integrase-like, N-terminal NIY04_11005 IPR019887 Transcription regulator AsnC/Lrp, ligand binding domain NIY04_11005 IPR036390 Winged helix DNA-binding domain superfamily NIY04_11005 IPR011008 Dimeric alpha-beta barrel NIY04_11005 IPR019888 Transcription regulator AsnC-type NIY04_11005 IPR011991 ArsR-like helix-turn-helix domain NIY04_11005 IPR019885 Transcription regulator HTH, AsnC-type, conserved site NIY04_11005 IPR000485 AsnC-type HTH domain NIY04_11005 IPR036388 Winged helix-like DNA-binding domain superfamily NIY04_11015 IPR003593 AAA+ ATPase domain NIY04_11015 IPR030679 ABC-type amino acid transport system, ATPase component, HisP-type NIY04_11015 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIY04_11015 IPR017871 ABC transporter, conserved site NIY04_11015 IPR003439 ABC transporter-like NIY04_11020 IPR035906 MetI-like superfamily NIY04_11020 IPR000515 ABC transporter type 1, transmembrane domain MetI-like NIY04_11020 IPR030205 Glutamate/aspartate transport system permease protein GltK/AatM NIY04_11020 IPR010065 Amino acid ABC transporter, permease protein, 3-TM domain NIY04_11025 IPR035906 MetI-like superfamily NIY04_11025 IPR000515 ABC transporter type 1, transmembrane domain MetI-like NIY04_11025 IPR030202 Glutamate/aspartate transport system permease protein GltJ/AatQ NIY04_11025 IPR010065 Amino acid ABC transporter, permease protein, 3-TM domain NIY04_11040 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily NIY04_11040 IPR013107 Acyl-CoA dehydrogenase, C-terminal domain NIY04_11040 IPR036250 Acyl-CoA dehydrogenase-like, C-terminal NIY04_11040 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal NIY04_11040 IPR037069 Acyl-CoA dehydrogenase/oxidase, N-terminal domain superfamily NIY04_11050 IPR011251 Luciferase-like domain NIY04_11050 IPR036661 Luciferase-like domain superfamily NIY04_11050 IPR016215 Nitrilotriacetate monooxygenase component A/pristinamycin IIA synthase subunit A NIY04_11055 IPR004872 Lipoprotein NlpA family NIY04_11060 IPR004872 Lipoprotein NlpA family NIY04_11065 IPR018449 NIL domain NIY04_11065 IPR041701 Methionine import ATP-binding protein MetN, ATP-binding cassette domain NIY04_11065 IPR017871 ABC transporter, conserved site NIY04_11065 IPR003439 ABC transporter-like NIY04_11065 IPR017908 ABC transporter, methionine import, ATP-binding protein, MetN, C-terminal NIY04_11065 IPR003593 AAA+ ATPase domain NIY04_11065 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIY04_11065 IPR026253 Methionine import ATP-binding protein MetN NIY04_11070 IPR000515 ABC transporter type 1, transmembrane domain MetI-like NIY04_11070 IPR035906 MetI-like superfamily NIY04_11075 IPR006073 GTP binding domain NIY04_11075 IPR004396 Ribosome-binding ATPase YchF/Obg-like ATPase 1 NIY04_11075 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIY04_11075 IPR004095 TGS NIY04_11075 IPR012676 TGS-like NIY04_11075 IPR023192 TGS-like domain superfamily NIY04_11075 IPR013029 YchF, C-terminal domain NIY04_11075 IPR041706 YchF, N-terminal NIY04_11075 IPR031167 OBG-type guanine nucleotide-binding (G) domain NIY04_11075 IPR012675 Beta-grasp domain superfamily NIY04_11100 IPR011606 Branched-chain amino acid transport, permease NIY04_11105 IPR008407 Branched-chain amino acid transport, AzlD NIY04_11115 IPR013815 ATP-grasp fold, subdomain 1 NIY04_11115 IPR011761 ATP-grasp fold NIY04_11115 IPR011054 Rudiment single hybrid motif NIY04_11115 IPR003135 ATP-grasp fold, ATP-dependent carboxylate-amine ligase-type NIY04_11115 IPR016185 Pre-ATP-grasp domain superfamily NIY04_11115 IPR005862 Formate-dependent phosphoribosylglycinamide formyltransferase NIY04_11120 IPR002912 ACT domain NIY04_11120 IPR010043 Bifunctional uridylyltransferase/uridylyl-removing enzyme NIY04_11120 IPR002934 Polymerase, nucleotidyl transferase domain NIY04_11120 IPR003607 HD/PDEase domain NIY04_11120 IPR006674 HD domain NIY04_11120 IPR013546 PII-uridylyltransferase/Glutamine-synthetase adenylyltransferase NIY04_11125 IPR004839 Aminotransferase, class I/classII NIY04_11125 IPR015421 Pyridoxal phosphate-dependent transferase, major domain NIY04_11125 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 NIY04_11125 IPR019880 4-dedimethylamino-4-oxo-anhydrotetracycline transaminase OxyQ NIY04_11125 IPR015424 Pyridoxal phosphate-dependent transferase NIY04_11135 IPR018060 DNA binding HTH domain, AraC-type NIY04_11135 IPR020449 Transcription regulator HTH, AraC- type NIY04_11135 IPR011051 RmlC-like cupin domain superfamily NIY04_11135 IPR032783 AraC-type transcription regulator, ligand-binding domain NIY04_11135 IPR009057 Homeobox-like domain superfamily NIY04_11135 IPR014710 RmlC-like jelly roll fold NIY04_11140 IPR029759 Glutathione peroxidase active site NIY04_11140 IPR029760 Glutathione peroxidase conserved site NIY04_11140 IPR036249 Thioredoxin-like superfamily NIY04_11140 IPR000889 Glutathione peroxidase NIY04_11145 IPR028427 Peptide methionine sulfoxide reductase NIY04_11145 IPR011057 Mss4-like superfamily NIY04_11145 IPR002579 Peptide methionine sulphoxide reductase MrsB NIY04_11150 IPR004839 Aminotransferase, class I/classII NIY04_11150 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 NIY04_11150 IPR015421 Pyridoxal phosphate-dependent transferase, major domain NIY04_11150 IPR015424 Pyridoxal phosphate-dependent transferase NIY04_11155 IPR001991 Sodium:dicarboxylate symporter NIY04_11155 IPR034703 Proton/glutamate-aspartate symporter GltP NIY04_11155 IPR036458 Sodium:dicarboxylate symporter superfamily NIY04_11155 IPR018107 Sodium:dicarboxylate symporter, conserved site NIY04_11155 IPR033380 Glutamate-aspartate symport protein GltP/GltT NIY04_11160 IPR037152 L-asparaginase, N-terminal domain superfamily NIY04_11160 IPR027474 L-asparaginase, N-terminal NIY04_11160 IPR027473 L-asparaginase, C-terminal NIY04_11160 IPR027475 Asparaginase/glutaminase, active site 2 NIY04_11160 IPR020827 Asparaginase/glutaminase, active site 1 NIY04_11160 IPR006034 Asparaginase/glutaminase-like NIY04_11160 IPR036152 Asparaginase/glutaminase-like superfamily NIY04_11160 IPR004550 L-asparaginase, type II NIY04_11160 IPR040919 Asparaginase/glutaminase, C-terminal NIY04_11165 IPR016195 Polymerase/histidinol phosphatase-like NIY04_11165 IPR004805 DNA polymerase III, alpha subunit NIY04_11165 IPR003141 Polymerase/histidinol phosphatase, N-terminal NIY04_11165 IPR029460 DNA polymerase, helix-hairpin-helix motif NIY04_11165 IPR004365 OB-fold nucleic acid binding domain, AA-tRNA synthetase-type NIY04_11165 IPR040982 DNA polymerase III alpha subunit finger domain NIY04_11165 IPR041931 Bacterial DNA polymerase III alpha subunit, thumb domain NIY04_11165 IPR011708 Bacterial DNA polymerase III, alpha subunit, NTPase domain NIY04_11165 IPR004013 PHP domain NIY04_11170 IPR029028 Alpha/beta knot methyltransferases NIY04_11170 IPR004384 RNA methyltransferase TrmJ/LasT NIY04_11170 IPR001537 tRNA/rRNA methyltransferase, SpoU type NIY04_11170 IPR029026 tRNA (guanine-N1-)-methyltransferase, N-terminal NIY04_11175 IPR001451 Hexapeptide repeat NIY04_11175 IPR018357 Hexapeptide transferase, conserved site NIY04_11175 IPR042122 Serine acetyltransferase, N-terminal domain superfamily NIY04_11175 IPR005881 Serine O-acetyltransferase NIY04_11175 IPR011004 Trimeric LpxA-like superfamily NIY04_11190 IPR036249 Thioredoxin-like superfamily NIY04_11190 IPR012336 Thioredoxin-like fold NIY04_11190 IPR012081 Alkyl hydroperoxide reductase subunit F NIY04_11190 IPR002109 Glutaredoxin NIY04_11190 IPR023753 FAD/NAD(P)-binding domain NIY04_11190 IPR036188 FAD/NAD(P)-binding domain superfamily NIY04_11190 IPR008255 Pyridine nucleotide-disulphide oxidoreductase, class-II, active site NIY04_11205 IPR036388 Winged helix-like DNA-binding domain superfamily NIY04_11205 IPR000847 Transcription regulator HTH, LysR NIY04_11205 IPR005119 LysR, substrate-binding NIY04_11205 IPR036390 Winged helix DNA-binding domain superfamily NIY04_11210 IPR004706 Arsenical-resistance protein Acr3 NIY04_11210 IPR002657 Bile acid:sodium symporter/arsenical resistance protein Acr3 NIY04_11210 IPR038770 Sodium/solute symporter superfamily NIY04_11215 IPR011991 ArsR-like helix-turn-helix domain NIY04_11215 IPR036390 Winged helix DNA-binding domain superfamily NIY04_11215 IPR036388 Winged helix-like DNA-binding domain superfamily NIY04_11215 IPR001845 HTH ArsR-type DNA-binding domain NIY04_11220 IPR036249 Thioredoxin-like superfamily NIY04_11220 IPR006660 Arsenate reductase-like NIY04_11220 IPR006659 Arsenate reductase NIY04_11230 IPR026912 Adenine deaminase C-terminal domain NIY04_11230 IPR006679 Adenine deaminase NIY04_11230 IPR011059 Metal-dependent hydrolase, composite domain superfamily NIY04_11230 IPR006680 Amidohydrolase-related NIY04_11230 IPR032466 Metal-dependent hydrolase NIY04_11240 IPR036390 Winged helix DNA-binding domain superfamily NIY04_11240 IPR036388 Winged helix-like DNA-binding domain superfamily NIY04_11240 IPR000847 Transcription regulator HTH, LysR NIY04_11240 IPR005119 LysR, substrate-binding NIY04_11250 IPR038271 Purine-cytosine permease superfamily NIY04_11250 IPR012681 Nucleobase cation symporter-1, NCS1 NIY04_11250 IPR001248 Purine-cytosine permease NIY04_11255 IPR015942 Asp/Glu/hydantoin racemase NIY04_11260 IPR003819 TauD/TfdA-like domain NIY04_11260 IPR006189 CHASE domain NIY04_11260 IPR042098 Taurine dioxygenase TauD-like superfamily NIY04_11265 IPR000515 ABC transporter type 1, transmembrane domain MetI-like NIY04_11265 IPR035906 MetI-like superfamily NIY04_11270 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIY04_11270 IPR015859 ABC transporter, taurine import, TauD NIY04_11270 IPR017871 ABC transporter, conserved site NIY04_11270 IPR003593 AAA+ ATPase domain NIY04_11270 IPR003439 ABC transporter-like NIY04_11275 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF NIY04_11275 IPR010068 Taurine ABC transporter, substrate-binding protein TauA NIY04_11275 IPR007210 ABC-type glycine betaine transport system, substrate-binding domain NIY04_11285 IPR020846 Major facilitator superfamily domain NIY04_11285 IPR036259 MFS transporter superfamily NIY04_11285 IPR005829 Sugar transporter, conserved site NIY04_11285 IPR005828 Major facilitator, sugar transporter-like NIY04_11290 IPR036661 Luciferase-like domain superfamily NIY04_11290 IPR016215 Nitrilotriacetate monooxygenase component A/pristinamycin IIA synthase subunit A NIY04_11290 IPR011251 Luciferase-like domain NIY04_11305 IPR002585 Cytochrome ubiquinol oxidase subunit 1 NIY04_11310 IPR003317 Cytochrome ubiquinol oxidase subunit 2 NIY04_11320 IPR015424 Pyridoxal phosphate-dependent transferase NIY04_11320 IPR000524 Transcription regulator HTH, GntR NIY04_11320 IPR015421 Pyridoxal phosphate-dependent transferase, major domain NIY04_11320 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 NIY04_11320 IPR036390 Winged helix DNA-binding domain superfamily NIY04_11320 IPR004839 Aminotransferase, class I/classII NIY04_11320 IPR036388 Winged helix-like DNA-binding domain superfamily NIY04_11325 IPR036390 Winged helix DNA-binding domain superfamily NIY04_11325 IPR036388 Winged helix-like DNA-binding domain superfamily NIY04_11325 IPR000847 Transcription regulator HTH, LysR NIY04_11325 IPR037400 Malonate utilization transcriptional regulator, PBP2 domain NIY04_11325 IPR005119 LysR, substrate-binding NIY04_11340 IPR014043 Acyl transferase NIY04_11340 IPR016035 Acyl transferase/acyl hydrolase/lysophospholipase NIY04_11340 IPR024925 Malonyl CoA-acyl carrier protein transacylase NIY04_11340 IPR016036 Malonyl-CoA ACP transacylase, ACP-binding NIY04_11340 IPR001227 Acyl transferase domain superfamily NIY04_11340 IPR004410 Malonyl CoA-acyl carrier protein transacylase, FabD-type NIY04_11345 IPR017557 Phosphoribosyl-dephospho-CoA transferase NIY04_11350 IPR029045 ClpP/crotonase-like domain superfamily NIY04_11350 IPR011763 Acetyl-coenzyme A carboxyltransferase, C-terminal NIY04_11350 IPR009648 Biotin-dependent malonate decarboxylase, gamma subunit NIY04_11355 IPR034733 Acetyl-CoA carboxylase NIY04_11355 IPR017556 Biotin-independent malonate decarboxylase, beta subunit NIY04_11355 IPR011762 Acetyl-coenzyme A carboxyltransferase, N-terminal NIY04_11355 IPR029045 ClpP/crotonase-like domain superfamily NIY04_11360 IPR023439 Malonate decarboxylase/citrate lyase acyl carrier protein NIY04_11360 IPR009662 Malonate decarboxylase delta subunit NIY04_11365 IPR002736 Triphosphoribosyl-dephospho-CoA protein NIY04_11365 IPR017555 Triphosphoribosyl-dephospho-CoA synthase NIY04_11370 IPR005777 Acetyl-S-ACP:malonate ACP transferase NIY04_11370 IPR037171 NagB/RpiA transferase-like NIY04_11375 IPR036390 Winged helix DNA-binding domain superfamily NIY04_11375 IPR005119 LysR, substrate-binding NIY04_11375 IPR000847 Transcription regulator HTH, LysR NIY04_11375 IPR036388 Winged helix-like DNA-binding domain superfamily NIY04_11385 IPR011701 Major facilitator superfamily NIY04_11385 IPR020846 Major facilitator superfamily domain NIY04_11385 IPR036259 MFS transporter superfamily NIY04_11400 IPR036390 Winged helix DNA-binding domain superfamily NIY04_11400 IPR036388 Winged helix-like DNA-binding domain superfamily NIY04_11400 IPR015421 Pyridoxal phosphate-dependent transferase, major domain NIY04_11400 IPR015424 Pyridoxal phosphate-dependent transferase NIY04_11400 IPR000524 Transcription regulator HTH, GntR NIY04_11405 IPR005261 Conserved hypothetical protein CHP00659 NIY04_11405 IPR007300 CidB/LrgB family NIY04_11410 IPR023760 Holin-like protein CidA NIY04_11410 IPR005538 LrgA/CidA family NIY04_11415 IPR005119 LysR, substrate-binding NIY04_11415 IPR000847 Transcription regulator HTH, LysR NIY04_11415 IPR036388 Winged helix-like DNA-binding domain superfamily NIY04_11415 IPR036390 Winged helix DNA-binding domain superfamily NIY04_11420 IPR010987 Glutathione S-transferase, C-terminal-like NIY04_11420 IPR036282 Glutathione S-transferase, C-terminal domain superfamily NIY04_11420 IPR034338 Glutathione S-transferases, subfamily 4, C-terminal NIY04_11420 IPR004045 Glutathione S-transferase, N-terminal NIY04_11420 IPR036249 Thioredoxin-like superfamily NIY04_11420 IPR040079 Glutathione Transferase family NIY04_11425 IPR036249 Thioredoxin-like superfamily NIY04_11425 IPR004045 Glutathione S-transferase, N-terminal NIY04_11425 IPR040079 Glutathione Transferase family NIY04_11425 IPR036282 Glutathione S-transferase, C-terminal domain superfamily NIY04_11425 IPR010987 Glutathione S-transferase, C-terminal-like NIY04_11430 IPR036390 Winged helix DNA-binding domain superfamily NIY04_11430 IPR036388 Winged helix-like DNA-binding domain superfamily NIY04_11430 IPR000847 Transcription regulator HTH, LysR NIY04_11430 IPR005119 LysR, substrate-binding NIY04_11435 IPR011284 3-oxoacyl-(acyl-carrier-protein) reductase NIY04_11435 IPR002347 Short-chain dehydrogenase/reductase SDR NIY04_11435 IPR036291 NAD(P)-binding domain superfamily NIY04_11435 IPR020904 Short-chain dehydrogenase/reductase, conserved site NIY04_11440 IPR023695 Thiosulfate sulfurtransferase, bacterial NIY04_11440 IPR001763 Rhodanese-like domain NIY04_11440 IPR036873 Rhodanese-like domain superfamily NIY04_11445 IPR001451 Hexapeptide repeat NIY04_11445 IPR042122 Serine acetyltransferase, N-terminal domain superfamily NIY04_11445 IPR011004 Trimeric LpxA-like superfamily NIY04_11455 IPR000192 Aminotransferase class V domain NIY04_11455 IPR010970 Cysteine desulfurase, SufS NIY04_11455 IPR015424 Pyridoxal phosphate-dependent transferase NIY04_11455 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 NIY04_11455 IPR015421 Pyridoxal phosphate-dependent transferase, major domain NIY04_11465 IPR001123 Amino acid exporter protein, LeuE-type NIY04_11470 IPR000847 Transcription regulator HTH, LysR NIY04_11470 IPR036388 Winged helix-like DNA-binding domain superfamily NIY04_11470 IPR005119 LysR, substrate-binding NIY04_11470 IPR036390 Winged helix DNA-binding domain superfamily NIY04_11480 IPR001320 Ionotropic glutamate receptor NIY04_11480 IPR018313 Solute-binding protein family 3, conserved site NIY04_11480 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF NIY04_11485 IPR018313 Solute-binding protein family 3, conserved site NIY04_11485 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF NIY04_11490 IPR003439 ABC transporter-like NIY04_11490 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIY04_11490 IPR017871 ABC transporter, conserved site NIY04_11490 IPR030679 ABC-type amino acid transport system, ATPase component, HisP-type NIY04_11490 IPR003593 AAA+ ATPase domain NIY04_11495 IPR010065 Amino acid ABC transporter, permease protein, 3-TM domain NIY04_11495 IPR000515 ABC transporter type 1, transmembrane domain MetI-like NIY04_11495 IPR035906 MetI-like superfamily NIY04_11500 IPR010065 Amino acid ABC transporter, permease protein, 3-TM domain NIY04_11500 IPR000515 ABC transporter type 1, transmembrane domain MetI-like NIY04_11500 IPR035906 MetI-like superfamily NIY04_11515 IPR011006 CheY-like superfamily NIY04_11515 IPR003607 HD/PDEase domain NIY04_11515 IPR037522 HD-GYP domain NIY04_11515 IPR001789 Signal transduction response regulator, receiver domain NIY04_11520 IPR029151 Periplasmic sensor-like domain superfamily NIY04_11520 IPR035965 PAS domain superfamily NIY04_11520 IPR015387 LuxQ, periplasmic NIY04_11520 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain NIY04_11520 IPR001789 Signal transduction response regulator, receiver domain NIY04_11520 IPR005467 Histidine kinase domain NIY04_11520 IPR004358 Signal transduction histidine kinase-related protein, C-terminal NIY04_11520 IPR036890 Histidine kinase/HSP90-like ATPase superfamily NIY04_11520 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily NIY04_11520 IPR011006 CheY-like superfamily NIY04_11520 IPR003594 Histidine kinase/HSP90-like ATPase NIY04_11530 IPR036390 Winged helix DNA-binding domain superfamily NIY04_11530 IPR036388 Winged helix-like DNA-binding domain superfamily NIY04_11530 IPR019885 Transcription regulator HTH, AsnC-type, conserved site NIY04_11530 IPR019887 Transcription regulator AsnC/Lrp, ligand binding domain NIY04_11530 IPR011008 Dimeric alpha-beta barrel NIY04_11530 IPR000485 AsnC-type HTH domain NIY04_11530 IPR019888 Transcription regulator AsnC-type NIY04_11530 IPR011991 ArsR-like helix-turn-helix domain NIY04_11540 IPR039418 LexA-like NIY04_11540 IPR036286 LexA/Signal peptidase-like superfamily NIY04_11540 IPR006197 Peptidase S24, LexA-like NIY04_11540 IPR015927 Peptidase S24/S26A/S26B/S26C NIY04_11560 IPR002347 Short-chain dehydrogenase/reductase SDR NIY04_11560 IPR036291 NAD(P)-binding domain superfamily NIY04_11560 IPR020904 Short-chain dehydrogenase/reductase, conserved site NIY04_11565 IPR002226 Catalase haem-binding site NIY04_11565 IPR010582 Catalase immune-responsive domain NIY04_11565 IPR041399 Large catalase, C-terminal domain NIY04_11565 IPR020835 Catalase superfamily NIY04_11565 IPR037060 Catalase core domain superfamily NIY04_11565 IPR029062 Class I glutamine amidotransferase-like NIY04_11565 IPR011614 Catalase core domain NIY04_11565 IPR024712 Catalase, mono-functional, haem-containing, clade 2 NIY04_11565 IPR018028 Catalase, mono-functional, haem-containing NIY04_11565 IPR024708 Catalase active site NIY04_11575 IPR001453 MoaB/Mog domain NIY04_11575 IPR036425 MoaB/Mog-like domain superfamily NIY04_11575 IPR008135 Competence-induced protein CinA NIY04_11575 IPR041424 CinA, KH domain NIY04_11575 IPR036653 CinA-like, C-terminal NIY04_11575 IPR008136 CinA, C-terminal NIY04_11610 IPR005119 LysR, substrate-binding NIY04_11610 IPR000847 Transcription regulator HTH, LysR NIY04_11610 IPR036388 Winged helix-like DNA-binding domain superfamily NIY04_11610 IPR036390 Winged helix DNA-binding domain superfamily NIY04_11630 IPR000873 AMP-dependent synthetase/ligase NIY04_11630 IPR020845 AMP-binding, conserved site NIY04_11630 IPR025110 AMP-binding enzyme, C-terminal domain NIY04_11635 IPR001647 DNA-binding HTH domain, TetR-type NIY04_11635 IPR009057 Homeobox-like domain superfamily NIY04_11640 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily NIY04_11640 IPR037069 Acyl-CoA dehydrogenase/oxidase, N-terminal domain superfamily NIY04_11640 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal NIY04_11640 IPR036250 Acyl-CoA dehydrogenase-like, C-terminal NIY04_11640 IPR006091 Acyl-CoA oxidase/dehydrogenase, central domain NIY04_11640 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal NIY04_11640 IPR006089 Acyl-CoA dehydrogenase, conserved site NIY04_11645 IPR029045 ClpP/crotonase-like domain superfamily NIY04_11645 IPR011763 Acetyl-coenzyme A carboxyltransferase, C-terminal NIY04_11645 IPR011762 Acetyl-coenzyme A carboxyltransferase, N-terminal NIY04_11645 IPR034733 Acetyl-CoA carboxylase NIY04_11650 IPR029045 ClpP/crotonase-like domain superfamily NIY04_11650 IPR018376 Enoyl-CoA hydratase/isomerase, conserved site NIY04_11650 IPR001753 Enoyl-CoA hydratase/isomerase NIY04_11650 IPR014748 Enoyl-CoA hydratase, C-terminal NIY04_11655 IPR011053 Single hybrid motif NIY04_11655 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain NIY04_11655 IPR011054 Rudiment single hybrid motif NIY04_11655 IPR041265 Propionyl-coenzyme A carboxylase, BT domain NIY04_11655 IPR000089 Biotin/lipoyl attachment NIY04_11655 IPR016185 Pre-ATP-grasp domain superfamily NIY04_11655 IPR011764 Biotin carboxylation domain NIY04_11655 IPR001882 Biotin-binding site NIY04_11655 IPR005481 Biotin carboxylase-like, N-terminal domain NIY04_11655 IPR013815 ATP-grasp fold, subdomain 1 NIY04_11655 IPR011761 ATP-grasp fold NIY04_11655 IPR005482 Biotin carboxylase, C-terminal NIY04_11660 IPR013785 Aldolase-type TIM barrel NIY04_11660 IPR027167 Hydroxymethylglutaryl-CoA lyase NIY04_11660 IPR000138 Hydroxymethylglutaryl-CoA lyase, active site NIY04_11660 IPR000891 Pyruvate carboxyltransferase NIY04_11665 IPR036388 Winged helix-like DNA-binding domain superfamily NIY04_11665 IPR036390 Winged helix DNA-binding domain superfamily NIY04_11665 IPR005119 LysR, substrate-binding NIY04_11665 IPR000847 Transcription regulator HTH, LysR NIY04_11680 IPR001123 Amino acid exporter protein, LeuE-type NIY04_11685 IPR036412 HAD-like superfamily NIY04_11685 IPR006439 HAD hydrolase, subfamily IA NIY04_11685 IPR041492 Haloacid dehalogenase-like hydrolase NIY04_11685 IPR023214 HAD superfamily NIY04_11685 IPR023198 Phosphoglycolate phosphatase-like, domain 2 NIY04_11685 IPR006323 Phosphonoacetaldehyde hydrolase NIY04_11690 IPR024169 Serine-pyruvate aminotransferase/2-aminoethylphosphonate-pyruvate transaminase NIY04_11690 IPR015421 Pyridoxal phosphate-dependent transferase, major domain NIY04_11690 IPR015424 Pyridoxal phosphate-dependent transferase NIY04_11690 IPR012703 2-aminoethylphosphonate--pyruvate transaminase NIY04_11690 IPR000192 Aminotransferase class V domain NIY04_11690 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 NIY04_11695 IPR036188 FAD/NAD(P)-binding domain superfamily NIY04_11695 IPR006076 FAD dependent oxidoreductase NIY04_11695 IPR006281 Sarcosine oxidase, monomeric NIY04_11700 IPR000515 ABC transporter type 1, transmembrane domain MetI-like NIY04_11700 IPR035906 MetI-like superfamily NIY04_11705 IPR013611 Transport-associated OB, type 2 NIY04_11705 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIY04_11705 IPR008995 Molybdate/tungstate binding, C-terminal NIY04_11705 IPR017666 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT2 NIY04_11705 IPR014769 ABC transporter, sulphate/thiosulphate import, ATP-binding protein CysA, C-terminal NIY04_11705 IPR003439 ABC transporter-like NIY04_11705 IPR003593 AAA+ ATPase domain NIY04_11705 IPR017871 ABC transporter, conserved site NIY04_11710 IPR026045 Ferric binding protein NIY04_11715 IPR011663 UbiC transcription regulator-associated NIY04_11715 IPR036390 Winged helix DNA-binding domain superfamily NIY04_11715 IPR000524 Transcription regulator HTH, GntR NIY04_11715 IPR036388 Winged helix-like DNA-binding domain superfamily NIY04_11715 IPR017722 Phosphonate utilization transcriptional regulator PhnR NIY04_11715 IPR028978 Chorismate pyruvate-lyase/UbiC transcription regulator-associated domain superfamily NIY04_11720 IPR000821 Alanine racemase NIY04_11720 IPR029066 PLP-binding barrel NIY04_11720 IPR020622 Alanine racemase, pyridoxal-phosphate attachment site NIY04_11720 IPR001608 Alanine racemase, N-terminal NIY04_11720 IPR011079 Alanine racemase, C-terminal NIY04_11720 IPR009006 Alanine racemase/group IV decarboxylase, C-terminal NIY04_11725 IPR012733 4-hydroxybenzoate 3-monooxygenase NIY04_11725 IPR036188 FAD/NAD(P)-binding domain superfamily NIY04_11725 IPR002938 FAD-binding domain NIY04_11730 IPR014757 Transcription regulator IclR, C-terminal NIY04_11730 IPR005471 Transcription regulator IclR, N-terminal NIY04_11730 IPR036388 Winged helix-like DNA-binding domain superfamily NIY04_11730 IPR036390 Winged helix DNA-binding domain superfamily NIY04_11730 IPR029016 GAF-like domain superfamily NIY04_11730 IPR012794 Beta-ketoadipate transcriptional regulator, PcaR/PcaU/PobR NIY04_11735 IPR023048 NADH-azoreductase, FMN-dependent NIY04_11735 IPR029039 Flavoprotein-like superfamily NIY04_11735 IPR003680 Flavodoxin-like fold NIY04_11740 IPR036388 Winged helix-like DNA-binding domain superfamily NIY04_11740 IPR000847 Transcription regulator HTH, LysR NIY04_11740 IPR005119 LysR, substrate-binding NIY04_11740 IPR036390 Winged helix DNA-binding domain superfamily NIY04_11745 IPR016174 Di-haem cytochrome, transmembrane NIY04_11745 IPR011577 Cytochrome b561, bacterial/Ni-hydrogenase NIY04_11750 IPR024168 Catalase, SrpA-type, predicted NIY04_11750 IPR018028 Catalase, mono-functional, haem-containing NIY04_11750 IPR011614 Catalase core domain NIY04_11750 IPR020835 Catalase superfamily NIY04_11785 IPR011973 Phenylacetic acid degradation protein PaaD NIY04_11785 IPR003736 Phenylacetic acid degradation-related domain NIY04_11785 IPR006683 Thioesterase domain NIY04_11785 IPR029069 HotDog domain superfamily NIY04_11790 IPR001451 Hexapeptide repeat NIY04_11790 IPR011004 Trimeric LpxA-like superfamily NIY04_11790 IPR023446 Carnitine operon protein CaiE NIY04_11795 IPR012906 PaaX-like, N-terminal NIY04_11795 IPR013225 PaaX-like, C-terminal NIY04_11795 IPR011965 Phenylacetic acid degradation operon negative regulatory protein PaaX NIY04_11795 IPR036388 Winged helix-like DNA-binding domain superfamily NIY04_11800 IPR000873 AMP-dependent synthetase/ligase NIY04_11800 IPR028154 AMP-dependent ligase, C-terminal NIY04_11800 IPR011880 Phenylacetate-CoA ligase NIY04_11800 IPR042099 AMP-dependent synthetase-like superfamily NIY04_11805 IPR020616 Thiolase, N-terminal NIY04_11805 IPR016039 Thiolase-like NIY04_11805 IPR020613 Thiolase, conserved site NIY04_11805 IPR020617 Thiolase, C-terminal NIY04_11805 IPR020610 Thiolase, active site NIY04_11805 IPR020615 Thiolase, acyl-enzyme intermediate active site NIY04_11805 IPR002155 Thiolase NIY04_11805 IPR012793 Beta-ketoadipyl CoA thiolase NIY04_11810 IPR036291 NAD(P)-binding domain superfamily NIY04_11810 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily NIY04_11810 IPR006108 3-hydroxyacyl-CoA dehydrogenase, C-terminal NIY04_11810 IPR011967 3-hydroxyacyl-CoA dehydrogenase PaaC NIY04_11810 IPR006180 3-hydroxyacyl-CoA dehydrogenase, conserved site NIY04_11810 IPR006176 3-hydroxyacyl-CoA dehydrogenase, NAD binding NIY04_11810 IPR041040 3-hydroxybutyryl-CoA dehydrogenase reduced Rossmann-fold domain NIY04_11815 IPR029045 ClpP/crotonase-like domain superfamily NIY04_11815 IPR001753 Enoyl-CoA hydratase/isomerase NIY04_11815 IPR014748 Enoyl-CoA hydratase, C-terminal NIY04_11815 IPR011968 Phenylacetate degradation probable enoyl-CoA hydratase PaaB NIY04_11820 IPR029045 ClpP/crotonase-like domain superfamily NIY04_11820 IPR018376 Enoyl-CoA hydratase/isomerase, conserved site NIY04_11820 IPR001753 Enoyl-CoA hydratase/isomerase NIY04_11820 IPR014748 Enoyl-CoA hydratase, C-terminal NIY04_11825 IPR036010 2Fe-2S ferredoxin-like superfamily NIY04_11825 IPR008333 Flavoprotein pyridine nucleotide cytochrome reductase-like, FAD-binding domain NIY04_11825 IPR012675 Beta-grasp domain superfamily NIY04_11825 IPR006058 2Fe-2S ferredoxin, iron-sulphur binding site NIY04_11825 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain NIY04_11825 IPR017927 FAD-binding domain, ferredoxin reductase-type NIY04_11825 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase NIY04_11825 IPR039261 Ferredoxin-NADP reductase (FNR), nucleotide-binding domain NIY04_11825 IPR001433 Oxidoreductase FAD/NAD(P)-binding NIY04_11825 IPR011884 Phenylacetate-CoA oxygenase/reductase, PaaK subunit NIY04_11825 IPR017938 Riboflavin synthase-like beta-barrel NIY04_11830 IPR034904 Fe-S cluster assembly domain superfamily NIY04_11830 IPR002744 MIP18 family-like NIY04_11830 IPR011883 Phenylacetate-CoA oxygenase, PaaJ subunit NIY04_11835 IPR012347 Ferritin-like NIY04_11835 IPR009078 Ferritin-like superfamily NIY04_11835 IPR007814 1,2-phenylacetyl-CoA epoxidase, subunit A/C NIY04_11835 IPR011882 1,2-phenylacetyl-CoA epoxidase, subunit C NIY04_11840 IPR038693 Phenylacetyl-CoA epoxidase, subunit B NIY04_11840 IPR009359 Phenylacetic acid degradation B NIY04_11845 IPR007814 1,2-phenylacetyl-CoA epoxidase, subunit A/C NIY04_11845 IPR009078 Ferritin-like superfamily NIY04_11845 IPR011881 1,2-phenylacetyl-CoA epoxidase, subunit A NIY04_11845 IPR012347 Ferritin-like NIY04_11850 IPR016162 Aldehyde dehydrogenase, N-terminal NIY04_11850 IPR002539 MaoC-like dehydratase domain NIY04_11850 IPR029069 HotDog domain superfamily NIY04_11850 IPR015590 Aldehyde dehydrogenase domain NIY04_11850 IPR016163 Aldehyde dehydrogenase, C-terminal NIY04_11850 IPR016161 Aldehyde/histidinol dehydrogenase NIY04_11850 IPR011966 Phenylacetic acid degradation protein PaaN NIY04_11855 IPR029009 Allosteric substrate binding domain superfamily NIY04_11855 IPR004644 Iron-sulphur-dependent L-serine dehydratase single chain form NIY04_11855 IPR005130 Serine dehydratase-like, alpha subunit NIY04_11855 IPR005131 Serine dehydratase beta chain NIY04_11860 IPR002293 Amino acid/polyamine transporter I NIY04_11865 IPR016163 Aldehyde dehydrogenase, C-terminal NIY04_11865 IPR016161 Aldehyde/histidinol dehydrogenase NIY04_11865 IPR016162 Aldehyde dehydrogenase, N-terminal NIY04_11865 IPR015590 Aldehyde dehydrogenase domain NIY04_11870 IPR005829 Sugar transporter, conserved site NIY04_11870 IPR020846 Major facilitator superfamily domain NIY04_11870 IPR005828 Major facilitator, sugar transporter-like NIY04_11870 IPR036259 MFS transporter superfamily NIY04_11880 IPR017224 Opine oxidase, subunit A/hydrogen cyanide synthase, subunit B NIY04_11880 IPR007419 BFD-like [2Fe-2S]-binding domain NIY04_11880 IPR041854 BFD-like [2Fe-2S]-binding domain superfamily NIY04_11880 IPR036188 FAD/NAD(P)-binding domain superfamily NIY04_11880 IPR023753 FAD/NAD(P)-binding domain NIY04_11890 IPR006076 FAD dependent oxidoreductase NIY04_11890 IPR036188 FAD/NAD(P)-binding domain superfamily NIY04_11890 IPR023080 D-amino acid dehydrogenase DadA NIY04_11895 IPR008794 Proline racemase family NIY04_11900 IPR036390 Winged helix DNA-binding domain superfamily NIY04_11900 IPR036388 Winged helix-like DNA-binding domain superfamily NIY04_11900 IPR000524 Transcription regulator HTH, GntR NIY04_11900 IPR008920 Transcription regulator FadR/GntR, C-terminal NIY04_11910 IPR020624 Schiff base-forming aldolase, conserved site NIY04_11910 IPR002220 DapA-like NIY04_11910 IPR013785 Aldolase-type TIM barrel NIY04_11910 IPR020625 Schiff base-forming aldolase, active site NIY04_11910 IPR005263 4-hydroxy-tetrahydrodipicolinate synthase, DapA NIY04_11920 IPR009061 Putative DNA-binding domain superfamily NIY04_11920 IPR000551 MerR-type HTH domain NIY04_11920 IPR010211 Redox-sensitive transcriptional activator SoxR NIY04_11920 IPR015358 Transcription regulator MerR, DNA binding NIY04_11930 IPR003828 Epoxyqueuosine reductase QueH NIY04_11945 IPR004747 Cyanate transport system protein NIY04_11945 IPR011701 Major facilitator superfamily NIY04_11945 IPR020846 Major facilitator superfamily domain NIY04_11945 IPR036259 MFS transporter superfamily NIY04_11950 IPR002125 Cytidine and deoxycytidylate deaminase domain NIY04_11950 IPR016192 APOBEC/CMP deaminase, zinc-binding NIY04_11950 IPR016193 Cytidine deaminase-like NIY04_11960 IPR000847 Transcription regulator HTH, LysR NIY04_11960 IPR005119 LysR, substrate-binding NIY04_11960 IPR036390 Winged helix DNA-binding domain superfamily NIY04_11960 IPR037404 HTH-type transcriptional activator IlvY, PBP2 domain NIY04_11960 IPR036388 Winged helix-like DNA-binding domain superfamily NIY04_11980 IPR010263 Type VI secretion protein, VC_A0114 NIY04_11985 IPR010657 ImpA, N-terminal NIY04_11985 IPR017740 Type VI secretion system-associated, ImpA NIY04_11990 IPR001270 ClpA/B family NIY04_11990 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIY04_11990 IPR018368 ClpA/B, conserved site 1 NIY04_11990 IPR004176 Clp, N-terminal NIY04_11990 IPR003959 ATPase, AAA-type, core NIY04_11990 IPR019489 Clp ATPase, C-terminal NIY04_11990 IPR017729 Type VI secretion system, ATPase ClpV1 NIY04_11990 IPR003593 AAA+ ATPase domain NIY04_11990 IPR036628 Clp, N-terminal domain superfamily NIY04_11990 IPR041546 ClpA/ClpB, AAA lid domain NIY04_12005 IPR006690 Outer membrane protein, OmpA-like, conserved site NIY04_12005 IPR036737 OmpA-like domain superfamily NIY04_12005 IPR000498 Outer membrane protein OmpA-like, transmembrane domain NIY04_12005 IPR006664 Outer membrane protein, bacterial NIY04_12005 IPR011250 Outer membrane protein/outer membrane enzyme PagP, beta-barrel NIY04_12005 IPR002368 Outer membrane protein, OmpA NIY04_12005 IPR006665 OmpA-like domain NIY04_12015 IPR017731 Type VI secretion system, IcmF NIY04_12015 IPR009612 IcmF-related NIY04_12015 IPR025743 IcmF-related, N-terminal domain NIY04_12015 IPR010623 Type VI secretion system IcmF, C-terminal NIY04_12015 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIY04_12030 IPR010272 Type VI secretion system, TssF-like NIY04_12045 IPR010269 Type VI secretion protein, EvpB/VC_A0108, tail sheath NIY04_12060 IPR005532 Sulfatase-modifying factor enzyme NIY04_12060 IPR016187 C-type lectin fold NIY04_12060 IPR042095 Sulfatase-modifying factor enzyme superfamily NIY04_12070 IPR028244 Putative type VI secretion system, Rhs element associated Vgr domain NIY04_12070 IPR018769 Domain of unknown function DUF2345, Vgr C-terminal NIY04_12070 IPR006531 Gp5 N-terminal NIY04_12070 IPR037026 Vgr protein, OB-fold domain superfamily NIY04_12070 IPR006533 Type VI secretion system, RhsGE-associated Vgr protein NIY04_12070 IPR017847 Type VI secretion system, RhsGE-associated Vgr family subset NIY04_12085 IPR003593 AAA+ ATPase domain NIY04_12085 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIY04_12085 IPR017871 ABC transporter, conserved site NIY04_12085 IPR003439 ABC transporter-like NIY04_12090 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF NIY04_12090 IPR018313 Solute-binding protein family 3, conserved site NIY04_12090 IPR001320 Ionotropic glutamate receptor NIY04_12095 IPR023631 Amidase signature domain NIY04_12095 IPR036928 Amidase signature (AS) superfamily NIY04_12095 IPR014085 Allophanate hydrolase NIY04_12100 IPR002145 Ribbon-helix-helix protein, CopG NIY04_12100 IPR027271 Acetolactate synthase/Transcription factor NikR, C-terminal NIY04_12100 IPR013321 Arc-type ribbon-helix-helix NIY04_12100 IPR022988 Nickel-responsive transcriptional regulator NikR NIY04_12100 IPR010985 Ribbon-helix-helix NIY04_12100 IPR014864 Transcription factor, NikR, nickel binding C-terminal NIY04_12120 IPR036390 Winged helix DNA-binding domain superfamily NIY04_12120 IPR002577 Helix-turn-helix, HxlR type NIY04_12120 IPR036388 Winged helix-like DNA-binding domain superfamily NIY04_12125 IPR003680 Flavodoxin-like fold NIY04_12125 IPR029039 Flavoprotein-like superfamily NIY04_12125 IPR023948 Glutathione-regulated potassium-efflux system ancillary protein KefF NIY04_12130 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain NIY04_12130 IPR016185 Pre-ATP-grasp domain superfamily NIY04_12130 IPR011054 Rudiment single hybrid motif NIY04_12130 IPR005481 Biotin carboxylase-like, N-terminal domain NIY04_12130 IPR011761 ATP-grasp fold NIY04_12130 IPR011764 Biotin carboxylation domain NIY04_12130 IPR005482 Biotin carboxylase, C-terminal NIY04_12145 IPR013154 Alcohol dehydrogenase, N-terminal NIY04_12145 IPR027399 Alcohol dehydrogenase GroES-associated NIY04_12145 IPR013149 Alcohol dehydrogenase, C-terminal NIY04_12145 IPR036291 NAD(P)-binding domain superfamily NIY04_12145 IPR011032 GroES-like superfamily NIY04_12145 IPR002328 Alcohol dehydrogenase, zinc-type, conserved site NIY04_12155 IPR009057 Homeobox-like domain superfamily NIY04_12155 IPR001647 DNA-binding HTH domain, TetR-type NIY04_12160 IPR002939 Chaperone DnaJ, C-terminal NIY04_12160 IPR001623 DnaJ domain NIY04_12160 IPR018253 DnaJ domain, conserved site NIY04_12160 IPR012724 Chaperone DnaJ NIY04_12160 IPR001305 Heat shock protein DnaJ, cysteine-rich domain NIY04_12160 IPR036410 Heat shock protein DnaJ, cysteine-rich domain superfamily NIY04_12160 IPR008971 HSP40/DnaJ peptide-binding NIY04_12160 IPR036869 Chaperone J-domain superfamily NIY04_12165 IPR014743 Chloride channel, core NIY04_12165 IPR001807 Chloride channel, voltage gated NIY04_12170 IPR011764 Biotin carboxylation domain NIY04_12170 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain NIY04_12170 IPR001882 Biotin-binding site NIY04_12170 IPR005481 Biotin carboxylase-like, N-terminal domain NIY04_12170 IPR016185 Pre-ATP-grasp domain superfamily NIY04_12170 IPR011054 Rudiment single hybrid motif NIY04_12170 IPR011053 Single hybrid motif NIY04_12170 IPR011761 ATP-grasp fold NIY04_12170 IPR005482 Biotin carboxylase, C-terminal NIY04_12170 IPR000089 Biotin/lipoyl attachment NIY04_12180 IPR016938 Uncharacterised protein family UPF0317 NIY04_12180 IPR038021 Putative hydro-lyase NIY04_12180 IPR009906 D-glutamate cyclase NIY04_12185 IPR011330 Glycoside hydrolase/deacetylase, beta/alpha-barrel NIY04_12185 IPR005501 LamB/YcsF/PxpA-like NIY04_12190 IPR001046 NRAMP family NIY04_12195 IPR036390 Winged helix DNA-binding domain superfamily NIY04_12195 IPR005119 LysR, substrate-binding NIY04_12195 IPR000847 Transcription regulator HTH, LysR NIY04_12195 IPR036388 Winged helix-like DNA-binding domain superfamily NIY04_12210 IPR023214 HAD superfamily NIY04_12210 IPR036412 HAD-like superfamily NIY04_12210 IPR006439 HAD hydrolase, subfamily IA NIY04_12210 IPR041492 Haloacid dehalogenase-like hydrolase NIY04_12210 IPR023733 Pyrophosphatase PpaX NIY04_12210 IPR023198 Phosphoglycolate phosphatase-like, domain 2 NIY04_12230 IPR036291 NAD(P)-binding domain superfamily NIY04_12230 IPR026578 L-carnitine dehydrogenase NIY04_12230 IPR013328 6-phosphogluconate dehydrogenase, domain 2 NIY04_12230 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily NIY04_12230 IPR006108 3-hydroxyacyl-CoA dehydrogenase, C-terminal NIY04_12230 IPR006176 3-hydroxyacyl-CoA dehydrogenase, NAD binding NIY04_12250 IPR011701 Major facilitator superfamily NIY04_12250 IPR036259 MFS transporter superfamily NIY04_12250 IPR005829 Sugar transporter, conserved site NIY04_12250 IPR004746 Major facilitator superfamily, aromatic acid:H+ symporter family NIY04_12250 IPR020846 Major facilitator superfamily domain NIY04_12270 IPR002523 Mg2+ transporter protein, CorA-like/Zinc transport protein ZntB NIY04_12270 IPR004488 Magnesium/cobalt transport protein CorA NIY04_12275 IPR004960 Bacterial lipid A biosynthesis acyltransferase NIY04_12275 IPR011920 Lipid A biosynthesis lauroyl (or palmitoleoyl) acyltransferase NIY04_12280 IPR005330 MHYT domain NIY04_12280 IPR000160 GGDEF domain NIY04_12280 IPR029787 Nucleotide cyclase NIY04_12280 IPR035919 EAL domain superfamily NIY04_12280 IPR001633 EAL domain NIY04_12285 IPR000620 EamA domain NIY04_12290 IPR036390 Winged helix DNA-binding domain superfamily NIY04_12290 IPR011991 ArsR-like helix-turn-helix domain NIY04_12290 IPR000485 AsnC-type HTH domain NIY04_12290 IPR011008 Dimeric alpha-beta barrel NIY04_12290 IPR019888 Transcription regulator AsnC-type NIY04_12290 IPR019887 Transcription regulator AsnC/Lrp, ligand binding domain NIY04_12290 IPR019885 Transcription regulator HTH, AsnC-type, conserved site NIY04_12290 IPR036388 Winged helix-like DNA-binding domain superfamily NIY04_12295 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIY04_12295 IPR007860 DNA mismatch repair protein MutS, connector domain NIY04_12295 IPR005748 DNA mismatch repair protein MutS NIY04_12295 IPR007695 DNA mismatch repair protein MutS-like, N-terminal NIY04_12295 IPR017261 DNA mismatch repair protein MutS/MSH NIY04_12295 IPR000432 DNA mismatch repair protein MutS, C-terminal NIY04_12295 IPR007861 DNA mismatch repair protein MutS, clamp NIY04_12295 IPR007696 DNA mismatch repair protein MutS, core NIY04_12295 IPR016151 DNA mismatch repair protein MutS, N-terminal NIY04_12295 IPR036187 DNA mismatch repair protein MutS, core domain superfamily NIY04_12295 IPR036678 MutS, connector domain superfamily NIY04_12305 IPR022569 Ferredoxin, C-terminal NIY04_12305 IPR000813 7Fe ferredoxin NIY04_12305 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site NIY04_12305 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain NIY04_12315 IPR002935 Class I-like SAM-dependent O-methyltransferase NIY04_12315 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase NIY04_12325 IPR011004 Trimeric LpxA-like superfamily NIY04_12325 IPR018357 Hexapeptide transferase, conserved site NIY04_12325 IPR001451 Hexapeptide repeat NIY04_12330 IPR036956 Impact, N-terminal domain superfamily NIY04_12330 IPR020568 Ribosomal protein S5 domain 2-type fold NIY04_12330 IPR035647 EF-G domain III/V-like NIY04_12330 IPR020569 Uncharacterised protein family UPF0029, Impact, conserved site NIY04_12330 IPR001498 Impact, N-terminal NIY04_12330 IPR023582 Impact family NIY04_12335 IPR006144 Secretion protein HlyD, conserved site NIY04_12335 IPR010129 Type I secretion membrane fusion protein, HlyD family NIY04_12340 IPR003439 ABC transporter-like NIY04_12340 IPR017871 ABC transporter, conserved site NIY04_12340 IPR011527 ABC transporter type 1, transmembrane domain NIY04_12340 IPR003593 AAA+ ATPase domain NIY04_12340 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIY04_12340 IPR005897 Peptidase C39, ABC-type bacteriocin transporter NIY04_12340 IPR005074 Peptidase C39, bacteriocin processing NIY04_12340 IPR039421 Type I protein exporter NIY04_12340 IPR036640 ABC transporter type 1, transmembrane domain superfamily NIY04_12345 IPR003423 Outer membrane efflux protein NIY04_12345 IPR010130 Type I secretion outer membrane protein, TolC NIY04_12350 IPR032823 Branched-chain amino acid ATP-binding cassette transporter, C-terminal NIY04_12350 IPR003593 AAA+ ATPase domain NIY04_12350 IPR017871 ABC transporter, conserved site NIY04_12350 IPR030921 LPS export ABC transporter, ATP-binding protein LptB NIY04_12350 IPR003439 ABC transporter-like NIY04_12350 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIY04_12355 IPR014340 Lipopolysaccharide export system protein LptA NIY04_12355 IPR005653 Organic solvent tolerance-like, N-terminal NIY04_12365 IPR036412 HAD-like superfamily NIY04_12365 IPR023214 HAD superfamily NIY04_12365 IPR010023 KdsC family NIY04_12370 IPR035474 KpsF-like, SIS domain NIY04_12370 IPR000644 CBS domain NIY04_12370 IPR004800 Phosphosugar isomerase, KdsD/KpsF-type NIY04_12370 IPR001347 Sugar isomerase (SIS) NIY04_12375 IPR009080 Aminoacyl-tRNA synthetase, class Ia, anticodon-binding NIY04_12375 IPR032678 tRNA synthetases class I, catalytic domain NIY04_12375 IPR015803 Cysteine-tRNA ligase NIY04_12375 IPR015273 Cysteinyl-tRNA synthetase, class Ia, DALR NIY04_12375 IPR024909 Cysteinyl-tRNA synthetase/mycothiol ligase NIY04_12375 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold NIY04_12400 IPR036390 Winged helix DNA-binding domain superfamily NIY04_12400 IPR036388 Winged helix-like DNA-binding domain superfamily NIY04_12400 IPR002577 Helix-turn-helix, HxlR type NIY04_12400 IPR011991 ArsR-like helix-turn-helix domain NIY04_12405 IPR011701 Major facilitator superfamily NIY04_12405 IPR036259 MFS transporter superfamily NIY04_12405 IPR020846 Major facilitator superfamily domain NIY04_12430 IPR028939 Pyrroline-5-carboxylate reductase, catalytic, N-terminal NIY04_12430 IPR000304 Pyrroline-5-carboxylate reductase NIY04_12430 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily NIY04_12430 IPR036291 NAD(P)-binding domain superfamily NIY04_12430 IPR029036 Pyrroline-5-carboxylate reductase, dimerisation domain NIY04_12440 IPR002059 Cold-shock protein, DNA-binding NIY04_12440 IPR012340 Nucleic acid-binding, OB-fold NIY04_12440 IPR019844 Cold-shock (CSD) domain NIY04_12440 IPR011129 Cold shock domain NIY04_12440 IPR012156 Cold shock, CspA NIY04_12445 IPR001123 Amino acid exporter protein, LeuE-type NIY04_12475 IPR003753 Exonuclease VII, large subunit NIY04_12475 IPR020579 Exonuclease VII, large subunit, C-terminal NIY04_12475 IPR025824 OB-fold nucleic acid binding domain NIY04_12510 IPR011789 Cu(I)-responsive transcriptional regulator NIY04_12510 IPR009061 Putative DNA-binding domain superfamily NIY04_12510 IPR000551 MerR-type HTH domain NIY04_12510 IPR015358 Transcription regulator MerR, DNA binding NIY04_12515 IPR017969 Heavy-metal-associated, conserved site NIY04_12515 IPR023299 P-type ATPase, cytoplasmic domain N NIY04_12515 IPR018303 P-type ATPase, phosphorylation site NIY04_12515 IPR001757 P-type ATPase NIY04_12515 IPR023298 P-type ATPase, transmembrane domain superfamily NIY04_12515 IPR036412 HAD-like superfamily NIY04_12515 IPR023214 HAD superfamily NIY04_12515 IPR027256 P-type ATPase, subfamily IB NIY04_12515 IPR036163 Heavy metal-associated domain superfamily NIY04_12515 IPR006121 Heavy metal-associated domain, HMA NIY04_12515 IPR006122 Heavy metal-associated domain, copper ion-binding NIY04_12515 IPR008250 P-type ATPase, A domain superfamily NIY04_12520 IPR036163 Heavy metal-associated domain superfamily NIY04_12520 IPR011795 Mercuric transport protein periplasmic component NIY04_12520 IPR001802 Mercuric transport protein periplasmic component/copper chaperone CopZ NIY04_12520 IPR006121 Heavy metal-associated domain, HMA NIY04_12520 IPR017969 Heavy-metal-associated, conserved site NIY04_12525 IPR036390 Winged helix DNA-binding domain superfamily NIY04_12525 IPR036388 Winged helix-like DNA-binding domain superfamily NIY04_12525 IPR000847 Transcription regulator HTH, LysR NIY04_12525 IPR005119 LysR, substrate-binding NIY04_12530 IPR036922 Rieske [2Fe-2S] iron-sulphur domain superfamily NIY04_12530 IPR015881 Aromatic-ring-hydroxylating dioxygenase, 2Fe-2S-binding site NIY04_12530 IPR017941 Rieske [2Fe-2S] iron-sulphur domain NIY04_12530 IPR017639 Benzoate 1,2-dioxygenase, large subunit NIY04_12530 IPR001663 Aromatic-ring-hydroxylating dioxygenase, alpha subunit NIY04_12530 IPR015879 Aromatic-ring-hydroxylating dioxygenase, alpha subunit, C-terminal domain NIY04_12535 IPR000391 Ring-hydroxylating dioxygenase beta subunit NIY04_12535 IPR032710 NTF2-like domain superfamily NIY04_12535 IPR017641 Benzoate 1,2-dioxygenase, small subunit NIY04_12540 IPR006058 2Fe-2S ferredoxin, iron-sulphur binding site NIY04_12540 IPR036010 2Fe-2S ferredoxin-like superfamily NIY04_12540 IPR008333 Flavoprotein pyridine nucleotide cytochrome reductase-like, FAD-binding domain NIY04_12540 IPR017927 FAD-binding domain, ferredoxin reductase-type NIY04_12540 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase NIY04_12540 IPR039261 Ferredoxin-NADP reductase (FNR), nucleotide-binding domain NIY04_12540 IPR001433 Oxidoreductase FAD/NAD(P)-binding NIY04_12540 IPR017938 Riboflavin synthase-like beta-barrel NIY04_12540 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain NIY04_12540 IPR012675 Beta-grasp domain superfamily NIY04_12545 IPR020904 Short-chain dehydrogenase/reductase, conserved site NIY04_12545 IPR036291 NAD(P)-binding domain superfamily NIY04_12545 IPR002347 Short-chain dehydrogenase/reductase SDR NIY04_12550 IPR004711 Benzoate transporter NIY04_12555 IPR011701 Major facilitator superfamily NIY04_12555 IPR004746 Major facilitator superfamily, aromatic acid:H+ symporter family NIY04_12555 IPR020846 Major facilitator superfamily domain NIY04_12555 IPR036259 MFS transporter superfamily NIY04_12555 IPR005829 Sugar transporter, conserved site NIY04_12565 IPR013747 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III, C-terminal NIY04_12565 IPR016039 Thiolase-like NIY04_12565 IPR004655 3-oxoacyl-[acyl-carrier-protein] synthase 3 NIY04_12565 IPR013751 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III NIY04_12570 IPR007502 Helicase-associated domain NIY04_12570 IPR011709 Domain of unknown function DUF1605 NIY04_12570 IPR011545 DEAD/DEAH box helicase domain NIY04_12570 IPR003593 AAA+ ATPase domain NIY04_12570 IPR014001 Helicase superfamily 1/2, ATP-binding domain NIY04_12570 IPR010222 RNA helicase HrpA NIY04_12570 IPR024590 RNA helicase HrpA, C-terminal NIY04_12570 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIY04_12570 IPR001650 Helicase, C-terminal NIY04_12575 IPR017559 Alkyl hydroperoxide reductase subunit C NIY04_12575 IPR000866 Alkyl hydroperoxide reductase subunit C/ Thiol specific antioxidant NIY04_12575 IPR024706 Peroxiredoxin, AhpC-type NIY04_12575 IPR019479 Peroxiredoxin, C-terminal NIY04_12575 IPR036249 Thioredoxin-like superfamily NIY04_12575 IPR013766 Thioredoxin domain NIY04_12585 IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase NIY04_12585 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase NIY04_12595 IPR012081 Alkyl hydroperoxide reductase subunit F NIY04_12595 IPR036188 FAD/NAD(P)-binding domain superfamily NIY04_12595 IPR023753 FAD/NAD(P)-binding domain NIY04_12595 IPR002109 Glutaredoxin NIY04_12595 IPR008255 Pyridine nucleotide-disulphide oxidoreductase, class-II, active site NIY04_12595 IPR012336 Thioredoxin-like fold NIY04_12595 IPR036249 Thioredoxin-like superfamily NIY04_12605 IPR036249 Thioredoxin-like superfamily NIY04_12605 IPR004046 Glutathione S-transferase, C-terminal NIY04_12605 IPR004045 Glutathione S-transferase, N-terminal NIY04_12605 IPR036282 Glutathione S-transferase, C-terminal domain superfamily NIY04_12605 IPR010987 Glutathione S-transferase, C-terminal-like NIY04_12615 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase NIY04_12615 IPR003358 tRNA (guanine-N-7) methyltransferase, Trmb type NIY04_12620 IPR010987 Glutathione S-transferase, C-terminal-like NIY04_12620 IPR036282 Glutathione S-transferase, C-terminal domain superfamily NIY04_12620 IPR004045 Glutathione S-transferase, N-terminal NIY04_12620 IPR004046 Glutathione S-transferase, C-terminal NIY04_12620 IPR036249 Thioredoxin-like superfamily NIY04_12630 IPR036737 OmpA-like domain superfamily NIY04_12630 IPR006690 Outer membrane protein, OmpA-like, conserved site NIY04_12630 IPR006665 OmpA-like domain NIY04_12630 IPR006664 Outer membrane protein, bacterial NIY04_12630 IPR039567 Glycine zipper domain NIY04_12635 IPR006680 Amidohydrolase-related NIY04_12635 IPR004722 Dihydroorotase NIY04_12635 IPR011059 Metal-dependent hydrolase, composite domain superfamily NIY04_12635 IPR032466 Metal-dependent hydrolase NIY04_12640 IPR006132 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding NIY04_12640 IPR006130 Aspartate/ornithine carbamoyltransferase NIY04_12640 IPR036901 Aspartate/ornithine carbamoyltransferase superfamily NIY04_12640 IPR002082 Aspartate carbamoyltransferase NIY04_12640 IPR006131 Aspartate/ornithine carbamoyltransferase, Asp/Orn-binding domain NIY04_12650 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase NIY04_12650 IPR019614 S-adenosylmethionine-dependent methyltransferase NIY04_12650 IPR000241 Putative RNA methylase domain NIY04_12650 IPR002052 DNA methylase, N-6 adenine-specific, conserved site NIY04_12650 IPR004114 THUMP domain NIY04_12650 IPR017244 Ribosomal RNA large subunit methyltransferase K/L NIY04_12665 IPR019489 Clp ATPase, C-terminal NIY04_12665 IPR004176 Clp, N-terminal NIY04_12665 IPR001270 ClpA/B family NIY04_12665 IPR018368 ClpA/B, conserved site 1 NIY04_12665 IPR036628 Clp, N-terminal domain superfamily NIY04_12665 IPR017730 Chaperonin ClpB NIY04_12665 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIY04_12665 IPR003593 AAA+ ATPase domain NIY04_12665 IPR003959 ATPase, AAA-type, core NIY04_12665 IPR028299 ClpA/B, conserved site 2 NIY04_12665 IPR041546 ClpA/ClpB, AAA lid domain NIY04_12680 IPR036102 OsmC/Ohr superfamily NIY04_12680 IPR003718 OsmC/Ohr family NIY04_12680 IPR015946 K homology domain-like, alpha/beta NIY04_12690 IPR036388 Winged helix-like DNA-binding domain superfamily NIY04_12690 IPR018335 Transcription regulator HTH, Crp-type, conserved site NIY04_12690 IPR036390 Winged helix DNA-binding domain superfamily NIY04_12690 IPR012318 Crp-type HTH domain NIY04_12690 IPR000595 Cyclic nucleotide-binding domain NIY04_12690 IPR018488 Cyclic nucleotide-binding, conserved site NIY04_12690 IPR018490 Cyclic nucleotide-binding-like NIY04_12690 IPR014710 RmlC-like jelly roll fold NIY04_12695 IPR036812 NADP-dependent oxidoreductase domain superfamily NIY04_12695 IPR020471 Aldo/keto reductase NIY04_12695 IPR023210 NADP-dependent oxidoreductase domain NIY04_12710 IPR042109 Adenylosuccinate synthetase, domain 1 NIY04_12710 IPR042110 Adenylosuccinate synthetase, domain 2 NIY04_12710 IPR018220 Adenylosuccinate synthase, GTP-binding site NIY04_12710 IPR042111 Adenylosuccinate synthetase, domain 3 NIY04_12710 IPR001114 Adenylosuccinate synthetase NIY04_12710 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIY04_12710 IPR033128 Adenylosuccinate synthase, active site NIY04_12715 IPR041715 Class II Histidinyl-tRNA synthetase (HisRS)-like catalytic core domain NIY04_12715 IPR004516 Histidine-tRNA ligase/ATP phosphoribosyltransferase regulatory subunit NIY04_12715 IPR004517 ATP phosphoribosyltransferase regulatory subunit NIY04_12720 IPR006422 D-erythrose-4-phosphate dehydrogenase NIY04_12720 IPR020830 Glyceraldehyde 3-phosphate dehydrogenase, active site NIY04_12720 IPR020829 Glyceraldehyde 3-phosphate dehydrogenase, catalytic domain NIY04_12720 IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family NIY04_12720 IPR036291 NAD(P)-binding domain superfamily NIY04_12720 IPR020828 Glyceraldehyde 3-phosphate dehydrogenase, NAD(P) binding domain NIY04_12725 IPR002318 Alanine-tRNA ligase, class IIc NIY04_12725 IPR018162 Alanine-tRNA ligase, class IIc, anti-codon-binding domain superfamily NIY04_12725 IPR018165 Alanyl-tRNA synthetase, class IIc, core domain NIY04_12725 IPR018164 Alanyl-tRNA synthetase, class IIc, N-terminal NIY04_12725 IPR023033 Alanine-tRNA ligase, eukaryota/bacteria NIY04_12725 IPR003156 DHHA1 domain NIY04_12725 IPR018163 Threonyl/alanyl tRNA synthetase, class II-like, putative editing domain superfamily NIY04_12725 IPR009000 Translation protein, beta-barrel domain superfamily NIY04_12725 IPR012947 Threonyl/alanyl tRNA synthetase, SAD NIY04_12730 IPR011010 DNA breaking-rejoining enzyme, catalytic core NIY04_12730 IPR013762 Integrase-like, catalytic domain superfamily NIY04_12730 IPR010998 Integrase/recombinase, N-terminal NIY04_12730 IPR025166 Integrase, DNA-binding domain NIY04_12730 IPR038488 Integrase, DNA-binding domain superfamily NIY04_12730 IPR002104 Integrase, catalytic domain NIY04_12745 IPR015927 Peptidase S24/S26A/S26B/S26C NIY04_12745 IPR036286 LexA/Signal peptidase-like superfamily NIY04_12745 IPR039418 LexA-like NIY04_12745 IPR006197 Peptidase S24, LexA-like NIY04_12750 IPR025188 Domain of unknown function DUF4113 NIY04_12750 IPR017961 DNA polymerase, Y-family, little finger domain NIY04_12750 IPR036775 DNA polymerase, Y-family, little finger domain superfamily NIY04_12750 IPR001126 UmuC domain NIY04_12865 IPR016913 Uncharacterised conserved protein UCP029215 NIY04_12885 IPR006445 Phage-associated protein HI1409 NIY04_12885 IPR024459 Protein of unknown function DUF1073 NIY04_12955 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase NIY04_12955 IPR031303 DNA methylase, C-5 cytosine-specific, conserved site NIY04_12955 IPR001525 C-5 cytosine methyltransferase NIY04_12955 IPR018117 DNA methylase, C-5 cytosine-specific, active site NIY04_12970 IPR010982 Lambda repressor-like, DNA-binding domain superfamily NIY04_12970 IPR001387 Cro/C1-type helix-turn-helix domain NIY04_12970 IPR031856 Putative bacterial antitoxin YdaS NIY04_12975 IPR006200 Transcription regulator LexA NIY04_12975 IPR039418 LexA-like NIY04_12975 IPR036286 LexA/Signal peptidase-like superfamily NIY04_12975 IPR006199 LexA repressor, DNA-binding domain NIY04_12975 IPR006197 Peptidase S24, LexA-like NIY04_12975 IPR015927 Peptidase S24/S26A/S26B/S26C NIY04_12975 IPR036388 Winged helix-like DNA-binding domain superfamily NIY04_12975 IPR036390 Winged helix DNA-binding domain superfamily NIY04_13025 IPR027795 CASTOR, ACT domain NIY04_13025 IPR018042 Aspartate kinase, conserved site NIY04_13025 IPR001341 Aspartate kinase NIY04_13025 IPR005260 Aspartate kinase, monofunctional class NIY04_13025 IPR001048 Aspartate/glutamate/uridylate kinase NIY04_13025 IPR041740 Aspartokinase catalytic domain NIY04_13025 IPR002912 ACT domain NIY04_13025 IPR036393 Acetylglutamate kinase-like superfamily NIY04_13030 IPR036107 Carbon storage regulator superfamily NIY04_13030 IPR003751 Translational regulator CsrA NIY04_13035 IPR036397 Ribonuclease H superfamily NIY04_13035 IPR012337 Ribonuclease H-like superfamily NIY04_13035 IPR024567 Ribonuclease HII/HIII domain NIY04_13035 IPR001352 Ribonuclease HII/HIII NIY04_13035 IPR022898 Ribonuclease HII NIY04_13045 IPR011577 Cytochrome b561, bacterial/Ni-hydrogenase NIY04_13045 IPR016174 Di-haem cytochrome, transmembrane NIY04_13050 IPR032466 Metal-dependent hydrolase NIY04_13050 IPR006330 Adenosine/adenine deaminase NIY04_13050 IPR028892 Adenine deaminase type 2 NIY04_13050 IPR001365 Adenosine/AMP deaminase domain NIY04_13055 IPR026033 Azaguanine-like transporters NIY04_13055 IPR006043 Xanthine/uracil/vitamin C permease NIY04_13065 IPR036188 FAD/NAD(P)-binding domain superfamily NIY04_13065 IPR020946 Flavin monooxygenase-like NIY04_13070 IPR036291 NAD(P)-binding domain superfamily NIY04_13070 IPR020904 Short-chain dehydrogenase/reductase, conserved site NIY04_13070 IPR002347 Short-chain dehydrogenase/reductase SDR NIY04_13080 IPR011051 RmlC-like cupin domain superfamily NIY04_13080 IPR014710 RmlC-like jelly roll fold NIY04_13080 IPR041602 Quercetin 2,3-dioxygenase, C-terminal cupin domain NIY04_13080 IPR012093 Pirin NIY04_13080 IPR003829 Pirin, N-terminal domain NIY04_13085 IPR001647 DNA-binding HTH domain, TetR-type NIY04_13085 IPR023772 DNA-binding HTH domain, TetR-type, conserved site NIY04_13085 IPR009057 Homeobox-like domain superfamily NIY04_13085 IPR041490 HTH-type transcriptional repressor KstR2, C-terminal NIY04_13085 IPR036271 Tetracyclin repressor-like, C-terminal domain superfamily NIY04_13095 IPR002347 Short-chain dehydrogenase/reductase SDR NIY04_13095 IPR020904 Short-chain dehydrogenase/reductase, conserved site NIY04_13095 IPR036291 NAD(P)-binding domain superfamily NIY04_13100 IPR020946 Flavin monooxygenase-like NIY04_13100 IPR036188 FAD/NAD(P)-binding domain superfamily NIY04_13105 IPR016874 Tetracenomycin polyketide synthesis O-methyltransferase TcmP NIY04_13105 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase NIY04_13105 IPR007213 Methyltransferase Ppm1/Ppm2/Tcmp NIY04_13105 IPR011610 S-adenosyl-L-methionine-dependent methyltransferase, putative NIY04_13110 IPR032687 HTH-type transcriptional regulator AraC-type, N-terminal NIY04_13110 IPR018060 DNA binding HTH domain, AraC-type NIY04_13110 IPR009057 Homeobox-like domain superfamily NIY04_13115 IPR036188 FAD/NAD(P)-binding domain superfamily NIY04_13115 IPR020946 Flavin monooxygenase-like NIY04_13120 IPR036291 NAD(P)-binding domain superfamily NIY04_13120 IPR020904 Short-chain dehydrogenase/reductase, conserved site NIY04_13120 IPR002347 Short-chain dehydrogenase/reductase SDR NIY04_13125 IPR013094 Alpha/beta hydrolase fold-3 NIY04_13125 IPR002168 Lipase, GDXG, putative histidine active site NIY04_13125 IPR033140 Lipase, GDXG, putative serine active site NIY04_13125 IPR029058 Alpha/Beta hydrolase fold NIY04_13130 IPR007867 Glucose-methanol-choline oxidoreductase, C-terminal NIY04_13130 IPR036188 FAD/NAD(P)-binding domain superfamily NIY04_13135 IPR023614 Porin domain superfamily NIY04_13135 IPR005318 Outer membrane porin, bacterial NIY04_13140 IPR020846 Major facilitator superfamily domain NIY04_13140 IPR036259 MFS transporter superfamily NIY04_13140 IPR005829 Sugar transporter, conserved site NIY04_13140 IPR011701 Major facilitator superfamily NIY04_13140 IPR004746 Major facilitator superfamily, aromatic acid:H+ symporter family NIY04_13145 IPR017941 Rieske [2Fe-2S] iron-sulphur domain NIY04_13145 IPR036922 Rieske [2Fe-2S] iron-sulphur domain superfamily NIY04_13145 IPR015881 Aromatic-ring-hydroxylating dioxygenase, 2Fe-2S-binding site NIY04_13150 IPR012675 Beta-grasp domain superfamily NIY04_13150 IPR039261 Ferredoxin-NADP reductase (FNR), nucleotide-binding domain NIY04_13150 IPR036010 2Fe-2S ferredoxin-like superfamily NIY04_13150 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain NIY04_13150 IPR006058 2Fe-2S ferredoxin, iron-sulphur binding site NIY04_13150 IPR017927 FAD-binding domain, ferredoxin reductase-type NIY04_13150 IPR001433 Oxidoreductase FAD/NAD(P)-binding NIY04_13150 IPR000951 Phthalate dioxygenase reductase NIY04_13150 IPR017938 Riboflavin synthase-like beta-barrel NIY04_13165 IPR005829 Sugar transporter, conserved site NIY04_13165 IPR036259 MFS transporter superfamily NIY04_13165 IPR020846 Major facilitator superfamily domain NIY04_13165 IPR011701 Major facilitator superfamily NIY04_13170 IPR029045 ClpP/crotonase-like domain superfamily NIY04_13170 IPR018376 Enoyl-CoA hydratase/isomerase, conserved site NIY04_13170 IPR001753 Enoyl-CoA hydratase/isomerase NIY04_13175 IPR015590 Aldehyde dehydrogenase domain NIY04_13175 IPR016162 Aldehyde dehydrogenase, N-terminal NIY04_13175 IPR029510 Aldehyde dehydrogenase, glutamic acid active site NIY04_13175 IPR016163 Aldehyde dehydrogenase, C-terminal NIY04_13175 IPR016161 Aldehyde/histidinol dehydrogenase NIY04_13185 IPR036250 Acyl-CoA dehydrogenase-like, C-terminal NIY04_13185 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal NIY04_13185 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal NIY04_13185 IPR006091 Acyl-CoA oxidase/dehydrogenase, central domain NIY04_13185 IPR006089 Acyl-CoA dehydrogenase, conserved site NIY04_13185 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily NIY04_13185 IPR037069 Acyl-CoA dehydrogenase/oxidase, N-terminal domain superfamily NIY04_13190 IPR023614 Porin domain superfamily NIY04_13190 IPR005318 Outer membrane porin, bacterial NIY04_13195 IPR020915 Uncharacterised protein family UPF0311 NIY04_13205 IPR029058 Alpha/Beta hydrolase fold NIY04_13205 IPR011118 Tannase/feruloyl esterase NIY04_13210 IPR036390 Winged helix DNA-binding domain superfamily NIY04_13210 IPR036388 Winged helix-like DNA-binding domain superfamily NIY04_13210 IPR000524 Transcription regulator HTH, GntR NIY04_13210 IPR008920 Transcription regulator FadR/GntR, C-terminal NIY04_13210 IPR011711 GntR, C-terminal NIY04_13215 IPR015590 Aldehyde dehydrogenase domain NIY04_13215 IPR016162 Aldehyde dehydrogenase, N-terminal NIY04_13215 IPR016163 Aldehyde dehydrogenase, C-terminal NIY04_13215 IPR016161 Aldehyde/histidinol dehydrogenase NIY04_13220 IPR013785 Aldolase-type TIM barrel NIY04_13220 IPR002220 DapA-like NIY04_13220 IPR017655 5-dehydro-4-deoxyglucarate dehydratase NIY04_13225 IPR034593 Mandelate racemase-like NIY04_13225 IPR013342 Mandelate racemase/muconate lactonizing enzyme, C-terminal NIY04_13225 IPR034598 D-Glucarate dehydratase-like NIY04_13225 IPR017653 Glucarate dehydratase NIY04_13225 IPR029065 Enolase C-terminal domain-like NIY04_13225 IPR029017 Enolase-like, N-terminal NIY04_13225 IPR036849 Enolase-like, C-terminal domain superfamily NIY04_13230 IPR000849 Sugar phosphate transporter NIY04_13230 IPR011701 Major facilitator superfamily NIY04_13230 IPR036259 MFS transporter superfamily NIY04_13230 IPR020846 Major facilitator superfamily domain NIY04_13235 IPR007392 D-galactarate/Altronate dehydratase, C-terminal NIY04_13235 IPR017654 Galactarate dehydratase GarD-like NIY04_13235 IPR032893 Galactarate dehydratase (L-threo-forming) GarD, Enterobacteriaceae NIY04_13235 IPR013974 SAF domain NIY04_13240 IPR000620 EamA domain NIY04_13245 IPR018060 DNA binding HTH domain, AraC-type NIY04_13245 IPR009057 Homeobox-like domain superfamily NIY04_13245 IPR032687 HTH-type transcriptional regulator AraC-type, N-terminal NIY04_13245 IPR020449 Transcription regulator HTH, AraC- type NIY04_13250 IPR015590 Aldehyde dehydrogenase domain NIY04_13250 IPR016161 Aldehyde/histidinol dehydrogenase NIY04_13250 IPR012394 Aldehyde dehydrogenase NAD(P)-dependent NIY04_13250 IPR016163 Aldehyde dehydrogenase, C-terminal NIY04_13250 IPR029510 Aldehyde dehydrogenase, glutamic acid active site NIY04_13250 IPR016162 Aldehyde dehydrogenase, N-terminal NIY04_13270 IPR004840 Amino acid permease, conserved site NIY04_13270 IPR004841 Amino acid permease/ SLC12A domain NIY04_13275 IPR017650 Arginine N-succinyltransferase NIY04_13275 IPR007041 Arginine N-succinyltransferase AstA/AruG NIY04_13275 IPR016181 Acyl-CoA N-acyltransferase NIY04_13280 IPR017652 Acetyl/Succinylornithine transaminase family, bacteria NIY04_13280 IPR004636 Acetylornithine/Succinylornithine transaminase family NIY04_13280 IPR005814 Aminotransferase class-III NIY04_13280 IPR015424 Pyridoxal phosphate-dependent transferase NIY04_13280 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 NIY04_13280 IPR015421 Pyridoxal phosphate-dependent transferase, major domain NIY04_13280 IPR026330 Succinylornithine transaminase NIY04_13290 IPR015657 Aminobutyraldehyde dehydrogenase NIY04_13290 IPR016161 Aldehyde/histidinol dehydrogenase NIY04_13290 IPR016162 Aldehyde dehydrogenase, N-terminal NIY04_13290 IPR015590 Aldehyde dehydrogenase domain NIY04_13290 IPR029510 Aldehyde dehydrogenase, glutamic acid active site NIY04_13290 IPR016163 Aldehyde dehydrogenase, C-terminal NIY04_13290 IPR017749 1-pyrroline dehydrogenase NIY04_13300 IPR000524 Transcription regulator HTH, GntR NIY04_13300 IPR008920 Transcription regulator FadR/GntR, C-terminal NIY04_13300 IPR036390 Winged helix DNA-binding domain superfamily NIY04_13300 IPR011711 GntR, C-terminal NIY04_13300 IPR036388 Winged helix-like DNA-binding domain superfamily NIY04_13310 IPR004841 Amino acid permease/ SLC12A domain NIY04_13315 IPR012727 Glycine oxidase ThiO NIY04_13315 IPR036188 FAD/NAD(P)-binding domain superfamily NIY04_13315 IPR006076 FAD dependent oxidoreductase NIY04_13320 IPR004841 Amino acid permease/ SLC12A domain NIY04_13320 IPR004840 Amino acid permease, conserved site NIY04_13345 IPR004872 Lipoprotein NlpA family NIY04_13350 IPR036188 FAD/NAD(P)-binding domain superfamily NIY04_13350 IPR002938 FAD-binding domain NIY04_13365 IPR036388 Winged helix-like DNA-binding domain superfamily NIY04_13365 IPR036390 Winged helix DNA-binding domain superfamily NIY04_13365 IPR005119 LysR, substrate-binding NIY04_13365 IPR000847 Transcription regulator HTH, LysR NIY04_13370 IPR036188 FAD/NAD(P)-binding domain superfamily NIY04_13370 IPR006076 FAD dependent oxidoreductase NIY04_13370 IPR023080 D-amino acid dehydrogenase DadA NIY04_13375 IPR035709 RutC family, YoaB-like NIY04_13375 IPR019897 RidA, conserved site NIY04_13375 IPR035959 RutC-like superfamily NIY04_13375 IPR006175 YjgF/YER057c/UK114 family NIY04_13420 IPR036188 FAD/NAD(P)-binding domain superfamily NIY04_13420 IPR023753 FAD/NAD(P)-binding domain NIY04_13420 IPR013785 Aldolase-type TIM barrel NIY04_13420 IPR001155 NADH:flavin oxidoreductase/NADH oxidase, N-terminal NIY04_13430 IPR018223 Argininosuccinate synthase, conserved site NIY04_13430 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold NIY04_13430 IPR024073 Argininosuccinate synthetase mutimerisation domain, C-terminal tail NIY04_13430 IPR024074 Argininosuccinate synthetase, catalytic/multimerisation domain body NIY04_13430 IPR023434 Argininosuccinate synthase, type 1 subfamily NIY04_13430 IPR001518 Argininosuccinate synthase NIY04_13430 IPR023437 Argininosuccinate synthase, type 2 subfamily NIY04_13435 IPR001294 Phytochrome NIY04_13435 IPR016132 Phytochrome chromophore attachment domain NIY04_13435 IPR029787 Nucleotide cyclase NIY04_13435 IPR029016 GAF-like domain superfamily NIY04_13435 IPR003018 GAF domain NIY04_13435 IPR035919 EAL domain superfamily NIY04_13435 IPR001633 EAL domain NIY04_13435 IPR013515 Phytochrome, central region NIY04_13435 IPR000160 GGDEF domain NIY04_13440 IPR006680 Amidohydrolase-related NIY04_13440 IPR004721 Dihydroorotase homodimeric type NIY04_13440 IPR002195 Dihydroorotase, conserved site NIY04_13440 IPR032466 Metal-dependent hydrolase NIY04_13445 IPR036397 Ribonuclease H superfamily NIY04_13445 IPR012337 Ribonuclease H-like superfamily NIY04_13445 IPR005987 Ribonuclease T NIY04_13445 IPR013520 Exonuclease, RNase T/DNA polymerase III NIY04_13455 IPR012910 TonB-dependent receptor, plug domain NIY04_13455 IPR037066 TonB-dependent receptor, plug domain superfamily NIY04_13455 IPR039423 TonB-dependent receptor-like NIY04_13455 IPR000531 TonB-dependent receptor-like, beta-barrel NIY04_13455 IPR036942 TonB-dependent receptor-like, beta-barrel domain superfamily NIY04_13455 IPR010105 TonB-dependent siderophore receptor NIY04_13460 IPR001155 NADH:flavin oxidoreductase/NADH oxidase, N-terminal NIY04_13460 IPR013785 Aldolase-type TIM barrel NIY04_13460 IPR023753 FAD/NAD(P)-binding domain NIY04_13460 IPR036188 FAD/NAD(P)-binding domain superfamily NIY04_13465 IPR017871 ABC transporter, conserved site NIY04_13465 IPR003439 ABC transporter-like NIY04_13465 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIY04_13465 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal NIY04_13465 IPR003593 AAA+ ATPase domain NIY04_13470 IPR025966 Oligopeptide transport permease C-like, N-terminal domain NIY04_13470 IPR035906 MetI-like superfamily NIY04_13470 IPR000515 ABC transporter type 1, transmembrane domain MetI-like NIY04_13475 IPR035906 MetI-like superfamily NIY04_13475 IPR000515 ABC transporter type 1, transmembrane domain MetI-like NIY04_13480 IPR039424 Solute-binding protein family 5 NIY04_13480 IPR000914 Solute-binding protein family 5 domain NIY04_13480 IPR030678 Peptide/nickel binding protein, MppA-type NIY04_13485 IPR036779 LysM domain superfamily NIY04_13485 IPR018392 LysM domain NIY04_13485 IPR018392 LysM domain NIY04_13485 IPR000189 Prokaryotic transglycosylase, active site NIY04_13485 IPR008258 Transglycosylase SLT domain 1 NIY04_13485 IPR023346 Lysozyme-like domain superfamily NIY04_13485 IPR000189 Prokaryotic transglycosylase, active site NIY04_13485 IPR008258 Transglycosylase SLT domain 1 NIY04_13485 IPR036779 LysM domain superfamily NIY04_13485 IPR023346 Lysozyme-like domain superfamily NIY04_13490 IPR036397 Ribonuclease H superfamily NIY04_13490 IPR012337 Ribonuclease H-like superfamily NIY04_13490 IPR013520 Exonuclease, RNase T/DNA polymerase III NIY04_13490 IPR006309 DNA polymerase 3, epsilon subunit NIY04_13490 IPR006054 DNA polymerase III epsilon subunit, exonuclease domain NIY04_13500 IPR015797 NUDIX hydrolase-like domain superfamily NIY04_13500 IPR022925 NADH pyrophosphatase NudC NIY04_13500 IPR015376 Zinc ribbon, NADH pyrophosphatase NIY04_13500 IPR000086 NUDIX hydrolase domain NIY04_13500 IPR020084 NUDIX hydrolase, conserved site NIY04_13510 IPR014004 Transport-associated and nodulation domain, bacteria NIY04_13510 IPR007055 BON domain NIY04_13515 IPR011335 Restriction endonuclease type II-like NIY04_13515 IPR003509 Uncharacterised protein family UPF0102 NIY04_13515 IPR011856 tRNA endonuclease-like domain superfamily NIY04_13520 IPR014777 Tetrapyrrole methylase, subdomain 1 NIY04_13520 IPR000878 Tetrapyrrole methylase NIY04_13520 IPR035996 Tetrapyrrole methylase superfamily NIY04_13520 IPR014776 Tetrapyrrole methylase, subdomain 2 NIY04_13520 IPR008189 rRNA small subunit methyltransferase I NIY04_13520 IPR018063 SAM-dependent methyltransferase RsmI, conserved site NIY04_13530 IPR036390 Winged helix DNA-binding domain superfamily NIY04_13530 IPR036388 Winged helix-like DNA-binding domain superfamily NIY04_13530 IPR017685 HTH-type transcriptional regulator ArgP NIY04_13530 IPR023490 HTH-type transcriptional regulator ArgP, Gammaproteobacteria NIY04_13530 IPR005119 LysR, substrate-binding NIY04_13530 IPR000847 Transcription regulator HTH, LysR NIY04_13535 IPR004777 L-lysine exporter/arginine exporter NIY04_13535 IPR001123 Amino acid exporter protein, LeuE-type NIY04_13535 IPR023445 Arginine exporter protein ArgO, enterobacteria NIY04_13545 IPR000551 MerR-type HTH domain NIY04_13545 IPR011794 Hg(II)-responsive transcriptional regulator NIY04_13545 IPR009061 Putative DNA-binding domain superfamily NIY04_13555 IPR018168 Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6, conserved site NIY04_13555 IPR010971 Ubiquinone biosynthesis hydroxylase UbiH/COQ6 NIY04_13555 IPR002938 FAD-binding domain NIY04_13555 IPR036188 FAD/NAD(P)-binding domain superfamily NIY04_13560 IPR018168 Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6, conserved site NIY04_13560 IPR002938 FAD-binding domain NIY04_13560 IPR036188 FAD/NAD(P)-binding domain superfamily NIY04_13560 IPR011295 2-polyprenyl-6-methoxyphenol 4-hydroxylase NIY04_13560 IPR010971 Ubiquinone biosynthesis hydroxylase UbiH/COQ6 NIY04_13565 IPR001131 Peptidase M24B, X-Pro dipeptidase/aminopeptidase P, conserved site NIY04_13565 IPR001714 Peptidase M24, methionine aminopeptidase NIY04_13565 IPR000994 Peptidase M24 NIY04_13565 IPR036005 Creatinase/aminopeptidase-like NIY04_13565 IPR029149 Creatinase/Aminopeptidase P/Spt16, N-terminal NIY04_13565 IPR007865 Aminopeptidase P, N-terminal NIY04_13605 IPR002698 5-formyltetrahydrofolate cyclo-ligase NIY04_13605 IPR024185 5-formyltetrahydrofolate cyclo-ligase-like domain superfamily NIY04_13605 IPR037171 NagB/RpiA transferase-like NIY04_13610 IPR006664 Outer membrane protein, bacterial NIY04_13610 IPR007450 Lipoprotein SmpA/OmlA NIY04_13610 IPR037873 BamE-like NIY04_13610 IPR036737 OmpA-like domain superfamily NIY04_13610 IPR006665 OmpA-like domain NIY04_13615 IPR008635 Coiled stalk of trimeric autotransporter adhesin NIY04_13615 IPR008640 Head domain of trimeric autotransporter adhesin NIY04_13615 IPR005594 YadA-like, C-terminal NIY04_13615 IPR011049 Serralysin-like metalloprotease, C-terminal NIY04_13615 IPR024973 ESPR domain NIY04_13620 IPR008269 Peptidase S16, Lon proteolytic domain NIY04_13620 IPR027065 Lon protease NIY04_13620 IPR003111 Lon, substrate-binding domain NIY04_13620 IPR027543 Lon protease, bacterial NIY04_13620 IPR008268 Peptidase S16, active site NIY04_13620 IPR015947 PUA-like superfamily NIY04_13620 IPR020568 Ribosomal protein S5 domain 2-type fold NIY04_13620 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup NIY04_13620 IPR003959 ATPase, AAA-type, core NIY04_13620 IPR003593 AAA+ ATPase domain NIY04_13620 IPR004815 Lon protease, bacterial/eukaryotic-type NIY04_13620 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIY04_13625 IPR003742 RNA methyltransferase RlmH NIY04_13625 IPR029026 tRNA (guanine-N1-)-methyltransferase, N-terminal NIY04_13625 IPR029028 Alpha/beta knot methyltransferases NIY04_13630 IPR004183 Extradiol ring-cleavage dioxygenase, class III enzyme, subunit B NIY04_13630 IPR014436 Extradiol aromatic ring-opening dioxygenase, DODA-type NIY04_13640 IPR006097 Glutamate/phenylalanine/leucine/valine dehydrogenase, dimerisation domain NIY04_13640 IPR033524 Leu/Phe/Val dehydrogenases active site NIY04_13640 IPR033922 NAD(P) binding domain of glutamate dehydrogenase NIY04_13640 IPR006096 Glutamate/phenylalanine/leucine/valine dehydrogenase, C-terminal NIY04_13640 IPR006095 Glutamate/phenylalanine/leucine/valine dehydrogenase NIY04_13640 IPR014362 Glutamate dehydrogenase NIY04_13640 IPR036291 NAD(P)-binding domain superfamily NIY04_13645 IPR007202 4Fe-4S domain NIY04_13645 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain NIY04_13645 IPR011005 Dihydropteroate synthase-like NIY04_13645 IPR010207 Ion-translocating oxidoreductase complex, RnfB/RsxB NIY04_13645 IPR016463 Electron transport complex, RnfB/RsxB, Proteobacteria NIY04_13645 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site NIY04_13650 IPR011257 DNA glycosylase NIY04_13650 IPR004036 Endonuclease III-like, conserved site-2 NIY04_13650 IPR003651 Endonuclease III-like, iron-sulphur cluster loop motif NIY04_13650 IPR003265 HhH-GPD domain NIY04_13650 IPR000445 Helix-hairpin-helix motif NIY04_13650 IPR023170 Helix-turn-helix, base-excision DNA repair, C-terminal NIY04_13650 IPR005759 Endonuclease III NIY04_13650 IPR004035 Endonuclease III, iron-sulphur binding site NIY04_13660 IPR006259 Adenylate kinase subfamily NIY04_13660 IPR000850 Adenylate kinase/UMP-CMP kinase NIY04_13660 IPR033690 Adenylate kinase, conserved site NIY04_13660 IPR007862 Adenylate kinase, active site lid domain NIY04_13660 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIY04_13675 IPR012338 Beta-lactamase/transpeptidase-like NIY04_13675 IPR005311 Penicillin-binding protein, dimerisation domain NIY04_13675 IPR036138 Penicillin-binding protein, dimerisation domain superfamily NIY04_13675 IPR001460 Penicillin-binding protein, transpeptidase NIY04_13675 IPR017790 Penicillin-binding protein 2 NIY04_13680 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase NIY04_13680 IPR002052 DNA methylase, N-6 adenine-specific, conserved site NIY04_13680 IPR004398 RNA methyltransferase, RsmD NIY04_13690 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIY04_13690 IPR004400 Urease accessory protein UreG NIY04_13690 IPR003495 CobW/HypB/UreG, nucleotide-binding domain NIY04_13695 IPR002639 Urease accessory protein UreF NIY04_13695 IPR038277 UreF domain superfamily NIY04_13700 IPR012406 Urease accessory protein UreE NIY04_13700 IPR007864 Urease accessory protein UreE, C-terminal domain NIY04_13700 IPR036675 UreE, C-terminal domain superfamily NIY04_13700 IPR004029 UreE urease accessory, N-terminal NIY04_13700 IPR036118 UreE urease accessory, N-terminal domain superfamily NIY04_13705 IPR017950 Urease active site NIY04_13705 IPR029754 Urease nickel binding site NIY04_13705 IPR017951 Urease alpha subunit, C-terminal NIY04_13705 IPR011612 Urease alpha-subunit, N-terminal domain NIY04_13705 IPR005848 Urease, alpha subunit NIY04_13705 IPR011059 Metal-dependent hydrolase, composite domain superfamily NIY04_13705 IPR006680 Amidohydrolase-related NIY04_13705 IPR032466 Metal-dependent hydrolase NIY04_13715 IPR002019 Urease, beta subunit NIY04_13715 IPR036461 Urease, beta subunit superfamily NIY04_13720 IPR002026 Urease, gamma/gamma-beta subunit NIY04_13720 IPR036463 Urease, gamma subunit superfamily NIY04_13720 IPR012010 Urease, gamma subunit NIY04_13725 IPR002669 Urease accessory protein UreD NIY04_13740 IPR039556 ICL/PEPM domain NIY04_13740 IPR006254 Isocitrate lyase NIY04_13740 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain superfamily NIY04_13740 IPR040442 Pyruvate kinase-like domain superfamily NIY04_13745 IPR036390 Winged helix DNA-binding domain superfamily NIY04_13745 IPR005119 LysR, substrate-binding NIY04_13745 IPR000847 Transcription regulator HTH, LysR NIY04_13745 IPR036388 Winged helix-like DNA-binding domain superfamily NIY04_13750 IPR005170 Transporter-associated domain NIY04_13750 IPR016169 FAD-binding, type PCMH, subdomain 2 NIY04_13750 IPR036318 FAD-binding, type PCMH-like superfamily NIY04_13750 IPR000644 CBS domain NIY04_13750 IPR002550 CNNM, transmembrane domain NIY04_13755 IPR004680 Citrate transporter-like domain NIY04_13755 IPR014738 Citrate transporter NIY04_13770 IPR005225 Small GTP-binding protein domain NIY04_13770 IPR011779 Sulphate adenylyltransferase, large subunit NIY04_13770 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIY04_13770 IPR009000 Translation protein, beta-barrel domain superfamily NIY04_13770 IPR041757 Sulfate adenylyltransferase subunit CysN, GTP-binding domain NIY04_13770 IPR002891 Adenylyl-sulfate kinase NIY04_13770 IPR031157 Tr-type G domain, conserved site NIY04_13770 IPR009001 Translation elongation factor EF1A/initiation factor IF2gamma, C-terminal NIY04_13770 IPR000795 Transcription factor, GTP-binding domain NIY04_13775 IPR011784 Sulphate adenylyltransferase, small subunit NIY04_13775 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold NIY04_13775 IPR002500 Phosphoadenosine phosphosulphate reductase NIY04_13785 IPR038636 Capsule assembly protein Wzi superfamily NIY04_13785 IPR026950 Capsule assembly protein Wzi NIY04_13790 IPR006195 Aminoacyl-tRNA synthetase, class II NIY04_13790 IPR004364 Aminoacyl-tRNA synthetase, class II (D/K/N) NIY04_13790 IPR018149 Lysyl-tRNA synthetase, class II, C-terminal NIY04_13790 IPR012340 Nucleic acid-binding, OB-fold NIY04_13790 IPR002313 Lysine-tRNA ligase, class II NIY04_13790 IPR004365 OB-fold nucleic acid binding domain, AA-tRNA synthetase-type NIY04_13805 IPR024922 Rubredoxin NIY04_13805 IPR024934 Rubredoxin-like domain NIY04_13805 IPR024935 Rubredoxin domain NIY04_13805 IPR018527 Rubredoxin, iron-binding site NIY04_13810 IPR023753 FAD/NAD(P)-binding domain NIY04_13810 IPR041364 Rubredoxin binding domain NIY04_13810 IPR036188 FAD/NAD(P)-binding domain superfamily NIY04_13815 IPR029058 Alpha/Beta hydrolase fold NIY04_13815 IPR000073 Alpha/beta hydrolase fold-1 NIY04_13815 IPR011942 Poly(3-hydroxyalkanoate) depolymerase NIY04_13820 IPR005119 LysR, substrate-binding NIY04_13820 IPR000847 Transcription regulator HTH, LysR NIY04_13820 IPR036388 Winged helix-like DNA-binding domain superfamily NIY04_13820 IPR036390 Winged helix DNA-binding domain superfamily NIY04_13835 IPR041108 Polyphosphate kinase, C-terminal domain 1 NIY04_13835 IPR024953 Polyphosphate kinase middle domain NIY04_13835 IPR036830 Polyphosphate kinase middle domain superfamily NIY04_13835 IPR025200 Polyphosphate kinase C-terminal domain 2 NIY04_13835 IPR003414 Polyphosphate kinase NIY04_13835 IPR036832 Polyphosphate kinase N-terminal domain superfamily NIY04_13835 IPR025198 Polyphosphate kinase N-terminal domain NIY04_13840 IPR001264 Glycosyl transferase, family 51 NIY04_13840 IPR011812 Biosynthetic peptidoglycan transglycosylase NIY04_13840 IPR023346 Lysozyme-like domain superfamily NIY04_13840 IPR036950 Penicillin binding protein transglycosylase domain NIY04_13845 IPR022764 Peptidase S54, rhomboid domain NIY04_13845 IPR035952 Rhomboid-like superfamily NIY04_13850 IPR038766 Membrane component of ABC transporter, predicted NIY04_13855 IPR017871 ABC transporter, conserved site NIY04_13855 IPR003593 AAA+ ATPase domain NIY04_13855 IPR003439 ABC transporter-like NIY04_13855 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIY04_13860 IPR036514 SGNH hydrolase superfamily NIY04_13860 IPR013830 SGNH hydrolase-type esterase domain NIY04_13865 IPR036874 Carbonic anhydrase superfamily NIY04_13865 IPR001765 Carbonic anhydrase NIY04_13865 IPR015892 Carbonic anhydrase, prokaryotic-like, conserved site NIY04_13870 IPR029058 Alpha/Beta hydrolase fold NIY04_13870 IPR000073 Alpha/beta hydrolase fold-1 NIY04_13870 IPR000639 Epoxide hydrolase-like NIY04_13880 IPR036942 TonB-dependent receptor-like, beta-barrel domain superfamily NIY04_13880 IPR010917 TonB-dependent receptor, conserved site NIY04_13880 IPR000531 TonB-dependent receptor-like, beta-barrel NIY04_13880 IPR010105 TonB-dependent siderophore receptor NIY04_13880 IPR037066 TonB-dependent receptor, plug domain superfamily NIY04_13880 IPR039426 Vitamin B12 transporter BtuB-like NIY04_13880 IPR012910 TonB-dependent receptor, plug domain NIY04_13885 IPR001075 NIF system FeS cluster assembly, NifU, C-terminal NIY04_13885 IPR034904 Fe-S cluster assembly domain superfamily NIY04_13885 IPR017726 Fe/S biogenesis protein NfuA NIY04_13885 IPR000361 FeS cluster biogenesis NIY04_13885 IPR035903 HesB-like domain superfamily NIY04_13895 IPR017850 Alkaline-phosphatase-like, core domain superfamily NIY04_13895 IPR024607 Sulfatase, conserved site NIY04_13895 IPR000917 Sulfatase, N-terminal NIY04_13900 IPR005532 Sulfatase-modifying factor enzyme NIY04_13900 IPR016187 C-type lectin fold NIY04_13900 IPR042095 Sulfatase-modifying factor enzyme superfamily NIY04_13915 IPR011780 D-serine ammonia-lyase NIY04_13915 IPR001926 Pyridoxal-phosphate dependent enzyme NIY04_13915 IPR000634 Serine/threonine dehydratase, pyridoxal-phosphate-binding site NIY04_13915 IPR036052 Tryptophan synthase beta subunit-like PLP-dependent enzyme NIY04_13920 IPR001204 Phosphate transporter NIY04_13930 IPR000489 Pterin-binding domain NIY04_13930 IPR004223 Vitamin B12-dependent methionine synthase, activation domain NIY04_13930 IPR003759 Cobalamin (vitamin B12)-binding module, cap domain NIY04_13930 IPR036594 Methionine synthase domain NIY04_13930 IPR037010 Vitamin B12-dependent methionine synthase, activation domain superfamily NIY04_13930 IPR011822 Cobalamin-dependent methionine synthase NIY04_13930 IPR006158 Cobalamin (vitamin B12)-binding domain NIY04_13930 IPR036589 Homocysteine-binding domain superfamily NIY04_13930 IPR036724 Cobalamin-binding domain superfamily NIY04_13930 IPR033706 Methionine synthase, B12-binding domain NIY04_13930 IPR003726 Homocysteine-binding domain NIY04_13930 IPR011005 Dihydropteroate synthase-like NIY04_13935 IPR029061 Thiamin diphosphate-binding fold NIY04_13935 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II NIY04_13935 IPR005475 Transketolase-like, pyrimidine-binding domain NIY04_13935 IPR033248 Transketolase, C-terminal domain NIY04_13940 IPR029061 Thiamin diphosphate-binding fold NIY04_13940 IPR005474 Transketolase, N-terminal NIY04_13945 IPR036259 MFS transporter superfamily NIY04_13945 IPR020846 Major facilitator superfamily domain NIY04_13945 IPR011701 Major facilitator superfamily NIY04_13950 IPR036291 NAD(P)-binding domain superfamily NIY04_13950 IPR020904 Short-chain dehydrogenase/reductase, conserved site NIY04_13950 IPR002347 Short-chain dehydrogenase/reductase SDR NIY04_13955 IPR005119 LysR, substrate-binding NIY04_13955 IPR000847 Transcription regulator HTH, LysR NIY04_13955 IPR036388 Winged helix-like DNA-binding domain superfamily NIY04_13955 IPR036390 Winged helix DNA-binding domain superfamily NIY04_13965 IPR014718 Glycoside hydrolase-type carbohydrate-binding NIY04_13965 IPR011013 Galactose mutarotase-like domain superfamily NIY04_13965 IPR008183 Aldose 1-/Glucose-6-phosphate 1-epimerase NIY04_13965 IPR018052 Aldose 1-epimerase, conserved site NIY04_13965 IPR015443 Aldose 1-epimerase NIY04_13975 IPR036259 MFS transporter superfamily NIY04_13975 IPR011701 Major facilitator superfamily NIY04_13975 IPR020846 Major facilitator superfamily domain NIY04_13980 IPR018062 HTH domain AraC-type, conserved site NIY04_13980 IPR018060 DNA binding HTH domain, AraC-type NIY04_13980 IPR037923 Transcription regulator HTH-like NIY04_13980 IPR009057 Homeobox-like domain superfamily NIY04_13980 IPR020449 Transcription regulator HTH, AraC- type NIY04_13980 IPR003313 AraC-type arabinose-binding/dimerisation domain NIY04_13985 IPR012338 Beta-lactamase/transpeptidase-like NIY04_13985 IPR015868 Glutaminase NIY04_13985 IPR002645 STAS domain NIY04_13985 IPR036513 STAS domain superfamily NIY04_13990 IPR023635 Peptide deformylase NIY04_13990 IPR036821 Peptide deformylase superfamily NIY04_13995 IPR005829 Sugar transporter, conserved site NIY04_13995 IPR020846 Major facilitator superfamily domain NIY04_13995 IPR011701 Major facilitator superfamily NIY04_13995 IPR036259 MFS transporter superfamily NIY04_14005 IPR012001 Thiamine pyrophosphate enzyme, N-terminal TPP-binding domain NIY04_14005 IPR000399 TPP-binding enzyme, conserved site NIY04_14005 IPR011766 Thiamine pyrophosphate enzyme, C-terminal TPP-binding NIY04_14005 IPR029061 Thiamin diphosphate-binding fold NIY04_14005 IPR012000 Thiamine pyrophosphate enzyme, central domain NIY04_14005 IPR029035 DHS-like NAD/FAD-binding domain superfamily NIY04_14005 IPR039368 Acetolactate synthase large subunit, TPP binding domain NIY04_14005 IPR012846 Acetolactate synthase, large subunit, biosynthetic NIY04_14010 IPR015590 Aldehyde dehydrogenase domain NIY04_14010 IPR016162 Aldehyde dehydrogenase, N-terminal NIY04_14010 IPR016160 Aldehyde dehydrogenase, cysteine active site NIY04_14010 IPR016163 Aldehyde dehydrogenase, C-terminal NIY04_14010 IPR016161 Aldehyde/histidinol dehydrogenase NIY04_14010 IPR011264 Betaine aldehyde dehydrogenase NIY04_14010 IPR029510 Aldehyde dehydrogenase, glutamic acid active site NIY04_14015 IPR005106 Aspartate/homoserine dehydrogenase, NAD-binding NIY04_14015 IPR020626 L-aspartate dehydrogenase, prokaryotic NIY04_14015 IPR036291 NAD(P)-binding domain superfamily NIY04_14015 IPR002811 Aspartate dehydrogenase NIY04_14015 IPR011182 L-aspartate dehydrogenase NIY04_14020 IPR002347 Short-chain dehydrogenase/reductase SDR NIY04_14020 IPR036291 NAD(P)-binding domain superfamily NIY04_14020 IPR020904 Short-chain dehydrogenase/reductase, conserved site NIY04_14025 IPR029058 Alpha/Beta hydrolase fold NIY04_14025 IPR000073 Alpha/beta hydrolase fold-1 NIY04_14035 IPR011701 Major facilitator superfamily NIY04_14035 IPR020846 Major facilitator superfamily domain NIY04_14035 IPR036259 MFS transporter superfamily NIY04_14035 IPR000849 Sugar phosphate transporter NIY04_14040 IPR036188 FAD/NAD(P)-binding domain superfamily NIY04_14040 IPR023753 FAD/NAD(P)-binding domain NIY04_14040 IPR023744 3-phenylpropionate/cinnamic acid dioxygenase, ferredoxin--NAD(+) reductase subunit NIY04_14040 IPR028202 Reductase, C-terminal NIY04_14040 IPR016156 FAD/NAD-linked reductase, dimerisation domain superfamily NIY04_14045 IPR000486 Extradiol ring-cleavage dioxygenase, class I /II NIY04_14045 IPR017626 2,3-dihydroxybiphenyl 1,2-dioxygenase NIY04_14045 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase NIY04_14045 IPR004360 Glyoxalase/fosfomycin resistance/dioxygenase domain NIY04_14045 IPR037523 Vicinal oxygen chelate (VOC) domain NIY04_14050 IPR002347 Short-chain dehydrogenase/reductase SDR NIY04_14050 IPR036291 NAD(P)-binding domain superfamily NIY04_14050 IPR020904 Short-chain dehydrogenase/reductase, conserved site NIY04_14055 IPR036922 Rieske [2Fe-2S] iron-sulphur domain superfamily NIY04_14055 IPR017941 Rieske [2Fe-2S] iron-sulphur domain NIY04_14065 IPR017941 Rieske [2Fe-2S] iron-sulphur domain NIY04_14065 IPR036922 Rieske [2Fe-2S] iron-sulphur domain superfamily NIY04_14070 IPR029016 GAF-like domain superfamily NIY04_14070 IPR014757 Transcription regulator IclR, C-terminal NIY04_14070 IPR005471 Transcription regulator IclR, N-terminal NIY04_14070 IPR036388 Winged helix-like DNA-binding domain superfamily NIY04_14070 IPR036390 Winged helix DNA-binding domain superfamily NIY04_14085 IPR014748 Enoyl-CoA hydratase, C-terminal NIY04_14085 IPR001753 Enoyl-CoA hydratase/isomerase NIY04_14085 IPR022852 Carnitinyl-CoA dehydratase NIY04_14085 IPR029045 ClpP/crotonase-like domain superfamily NIY04_14085 IPR018376 Enoyl-CoA hydratase/isomerase, conserved site NIY04_14095 IPR029044 Nucleotide-diphospho-sugar transferases NIY04_14095 IPR023853 Poly-beta-1,6 N-acetyl-D-glucosamine synthase PgaC/IcaA NIY04_14095 IPR001173 Glycosyltransferase 2-like NIY04_14100 IPR032772 Poly-beta-1,6-N-acetyl-D-glucosamine N-deacetylase PgaB, C-terminal NIY04_14100 IPR023854 Poly-beta-1,6-N-acetyl-D-glucosamine N-deacetylase PgaB NIY04_14100 IPR011330 Glycoside hydrolase/deacetylase, beta/alpha-barrel NIY04_14100 IPR002509 NodB homology domain NIY04_14105 IPR001179 FKBP-type peptidyl-prolyl cis-trans isomerase domain NIY04_14110 IPR011335 Restriction endonuclease type II-like NIY04_14110 IPR009822 YaeQ NIY04_14110 IPR038590 YaeQ superfamily NIY04_14115 IPR023954 C4-dicarboxylate transport protein NIY04_14115 IPR001991 Sodium:dicarboxylate symporter NIY04_14115 IPR018107 Sodium:dicarboxylate symporter, conserved site NIY04_14115 IPR036458 Sodium:dicarboxylate symporter superfamily NIY04_14120 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIY04_14120 IPR011629 Cobalamin (vitamin B12) biosynthesis CobW-like, C-terminal NIY04_14120 IPR003495 CobW/HypB/UreG, nucleotide-binding domain NIY04_14130 IPR040170 Cytosolic acyl coenzyme A thioester hydrolase NIY04_14130 IPR033120 Hotdog acyl-CoA thioesterase (ACOT)-type domain NIY04_14130 IPR029069 HotDog domain superfamily NIY04_14130 IPR006683 Thioesterase domain NIY04_14140 IPR018093 BCCT transporter, conserved site NIY04_14140 IPR000060 BCCT transporter family NIY04_14145 IPR018093 BCCT transporter, conserved site NIY04_14145 IPR000060 BCCT transporter family NIY04_14150 IPR017757 Transcriptional repressor BetI NIY04_14150 IPR036271 Tetracyclin repressor-like, C-terminal domain superfamily NIY04_14150 IPR039538 BetI-type transcriptional repressor, C-terminal NIY04_14150 IPR009057 Homeobox-like domain superfamily NIY04_14150 IPR001647 DNA-binding HTH domain, TetR-type NIY04_14155 IPR016161 Aldehyde/histidinol dehydrogenase NIY04_14155 IPR016163 Aldehyde dehydrogenase, C-terminal NIY04_14155 IPR016160 Aldehyde dehydrogenase, cysteine active site NIY04_14155 IPR029510 Aldehyde dehydrogenase, glutamic acid active site NIY04_14155 IPR016162 Aldehyde dehydrogenase, N-terminal NIY04_14155 IPR015590 Aldehyde dehydrogenase domain NIY04_14155 IPR011264 Betaine aldehyde dehydrogenase NIY04_14160 IPR007867 Glucose-methanol-choline oxidoreductase, C-terminal NIY04_14160 IPR000172 Glucose-methanol-choline oxidoreductase, N-terminal NIY04_14160 IPR011533 Oxygen-dependent choline dehydrogenase NIY04_14160 IPR027424 Glucose Oxidase, domain 2 NIY04_14160 IPR036188 FAD/NAD(P)-binding domain superfamily NIY04_14160 IPR012132 Glucose-methanol-choline oxidoreductase NIY04_14165 IPR036188 FAD/NAD(P)-binding domain superfamily NIY04_14165 IPR006231 Malate:quinone-oxidoreductase NIY04_14175 IPR036589 Homocysteine-binding domain superfamily NIY04_14175 IPR017226 Betaine-homocysteine S-methyltransferase, BHMT NIY04_14175 IPR003726 Homocysteine-binding domain NIY04_14180 IPR002293 Amino acid/polyamine transporter I NIY04_14180 IPR004754 Amino acid antiporter NIY04_14205 IPR013785 Aldolase-type TIM barrel NIY04_14205 IPR002220 DapA-like NIY04_14205 IPR020625 Schiff base-forming aldolase, active site NIY04_14205 IPR020624 Schiff base-forming aldolase, conserved site NIY04_14210 IPR036259 MFS transporter superfamily NIY04_14210 IPR005829 Sugar transporter, conserved site NIY04_14210 IPR005828 Major facilitator, sugar transporter-like NIY04_14210 IPR020846 Major facilitator superfamily domain NIY04_14250 IPR029055 Nucleophile aminohydrolases, N-terminal NIY04_14250 IPR000101 Gamma-glutamyltranspeptidase NIY04_14255 IPR011701 Major facilitator superfamily NIY04_14255 IPR004638 Drug resistance transporter EmrB-like NIY04_14255 IPR020846 Major facilitator superfamily domain NIY04_14255 IPR036259 MFS transporter superfamily NIY04_14260 IPR039562 Membrane fusion protein, biotin-lipoyl like domain NIY04_14265 IPR029069 HotDog domain superfamily NIY04_14265 IPR003736 Phenylacetic acid degradation-related domain NIY04_14265 IPR006683 Thioesterase domain NIY04_14270 IPR001731 Delta-aminolevulinic acid dehydratase NIY04_14270 IPR030656 Delta-aminolevulinic acid dehydratase, active site NIY04_14270 IPR013785 Aldolase-type TIM barrel NIY04_14275 IPR012727 Glycine oxidase ThiO NIY04_14275 IPR006076 FAD dependent oxidoreductase NIY04_14275 IPR036188 FAD/NAD(P)-binding domain superfamily NIY04_14280 IPR010099 Epimerase family protein SDR39U1 NIY04_14280 IPR013549 Domain of unknown function DUF1731 NIY04_14280 IPR036291 NAD(P)-binding domain superfamily NIY04_14280 IPR001509 NAD-dependent epimerase/dehydratase NIY04_14300 IPR004593 Nuclease SbcCD subunit D NIY04_14300 IPR041796 Mre11 nuclease, N-terminal metallophosphatase domain NIY04_14300 IPR029052 Metallo-dependent phosphatase-like NIY04_14300 IPR004843 Calcineurin-like phosphoesterase domain, ApaH type NIY04_14300 IPR026843 Nuclease SbcCD subunit D, C-terminal domain NIY04_14305 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIY04_14310 IPR001608 Alanine racemase, N-terminal NIY04_14310 IPR029066 PLP-binding barrel NIY04_14310 IPR011078 Pyridoxal phosphate homeostasis protein NIY04_14315 IPR003593 AAA+ ATPase domain NIY04_14315 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIY04_14315 IPR006321 Pilus retraction protein PilT NIY04_14315 IPR001482 Type II/IV secretion system protein NIY04_14320 IPR001482 Type II/IV secretion system protein NIY04_14320 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIY04_14320 IPR006321 Pilus retraction protein PilT NIY04_14325 IPR036388 Winged helix-like DNA-binding domain superfamily NIY04_14325 IPR002481 Ferric-uptake regulator NIY04_14325 IPR036390 Winged helix DNA-binding domain superfamily NIY04_14330 IPR037873 BamE-like NIY04_14330 IPR007450 Lipoprotein SmpA/OmlA NIY04_14330 IPR026592 Outer membrane protein assembly factor BamE NIY04_14335 IPR016155 Molybdopterin synthase/thiamin biosynthesis sulphur carrier, beta-grasp NIY04_14335 IPR005346 RnfH protein NIY04_14335 IPR037021 RnfH superfamily NIY04_14345 IPR023504 Bacteriohemerythrin-like protein NIY04_14345 IPR012312 Haemerythrin-like NIY04_14345 IPR016131 Haemerythrin, iron-binding site NIY04_14345 IPR035938 Hemerythrin-like superfamily NIY04_14345 IPR012827 Haemerythrin, metal-binding domain NIY04_14350 IPR017932 Glutamine amidotransferase type 2 domain NIY04_14350 IPR029055 Nucleophile aminohydrolases, N-terminal NIY04_14350 IPR026869 Putative glutamine amidotransferase type 2 NIY04_14360 IPR001048 Aspartate/glutamate/uridylate kinase NIY04_14360 IPR041727 N-Acetyl-L-glutamate kinase, cyclic NIY04_14360 IPR004662 Acetylglutamate kinase family NIY04_14360 IPR037528 Acetylglutamate kinase ArgB NIY04_14360 IPR036393 Acetylglutamate kinase-like superfamily NIY04_14365 IPR005841 Alpha-D-phosphohexomutase superfamily NIY04_14365 IPR016066 Alpha-D-phosphohexomutase, conserved site NIY04_14365 IPR036900 Alpha-D-phosphohexomutase, C-terminal domain superfamily NIY04_14365 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III NIY04_14365 IPR005846 Alpha-D-phosphohexomutase, alpha/beta/alpha domain III NIY04_14365 IPR005845 Alpha-D-phosphohexomutase, alpha/beta/alpha domain II NIY04_14365 IPR005844 Alpha-D-phosphohexomutase, alpha/beta/alpha domain I NIY04_14365 IPR005843 Alpha-D-phosphohexomutase, C-terminal NIY04_14370 IPR029054 dUTPase-like NIY04_14370 IPR008181 Deoxyuridine triphosphate nucleotidohydrolase NIY04_14370 IPR033704 dUTPase, trimeric NIY04_14370 IPR036157 dUTPase-like superfamily NIY04_14375 IPR013986 DExx box DNA helicase domain superfamily NIY04_14375 IPR014017 UvrD-like DNA helicase, C-terminal NIY04_14375 IPR000212 DNA helicase, UvrD/REP type NIY04_14375 IPR005752 ATP-dependent DNA helicase Rep NIY04_14375 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIY04_14375 IPR014016 UvrD-like helicase, ATP-binding domain NIY04_14375 IPR034739 UvrD/AddA helicase, N-terminal NIY04_14380 IPR006690 Outer membrane protein, OmpA-like, conserved site NIY04_14380 IPR036737 OmpA-like domain superfamily NIY04_14380 IPR006665 OmpA-like domain NIY04_14380 IPR039567 Glycine zipper domain NIY04_14380 IPR006664 Outer membrane protein, bacterial NIY04_14385 IPR002123 Phospholipid/glycerol acyltransferase NIY04_14395 IPR013033 Septum formation inhibitor MinC NIY04_14395 IPR036145 Septum formation inhibitor MinC, C-terminal domain superfamily NIY04_14395 IPR005526 Septum formation inhibitor MinC, C-terminal NIY04_14395 IPR016098 Cyclase-associated protein CAP/septum formation inhibitor MinC, C-terminal NIY04_14400 IPR002586 CobQ/CobB/MinD/ParA nucleotide binding domain NIY04_14400 IPR010223 ATP binding protein MinD, bacterial-type NIY04_14400 IPR025501 ATP binding protein MinD NIY04_14400 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIY04_14405 IPR005527 Cell division topological specificity factor MinE NIY04_14405 IPR036707 Cell division topological specificity factor MinE superfamily NIY04_14415 IPR004778 Homoserine/Threonine efflux protein NIY04_14415 IPR001123 Amino acid exporter protein, LeuE-type NIY04_14420 IPR036390 Winged helix DNA-binding domain superfamily NIY04_14420 IPR036388 Winged helix-like DNA-binding domain superfamily NIY04_14420 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIY04_14420 IPR002543 FtsK domain NIY04_14420 IPR025199 DNA translocase FtsK, 4TM region NIY04_14420 IPR018541 FtsK gamma domain NIY04_14420 IPR041027 FtsK alpha domain NIY04_14425 IPR036188 FAD/NAD(P)-binding domain superfamily NIY04_14425 IPR023753 FAD/NAD(P)-binding domain NIY04_14425 IPR008255 Pyridine nucleotide-disulphide oxidoreductase, class-II, active site NIY04_14425 IPR005982 Thioredoxin reductase NIY04_14430 IPR016181 Acyl-CoA N-acyltransferase NIY04_14430 IPR004616 Leucyl/phenylalanyl-tRNA-protein transferase NIY04_14430 IPR042203 Leucyl/phenylalanyl-tRNA-protein transferase, C-terminal NIY04_14435 IPR007471 N-end aminoacyl transferase, N-terminal NIY04_14435 IPR007472 N-end rule aminoacyl transferase, C-terminal NIY04_14435 IPR017138 Aspartate/glutamate leucyltransferase NIY04_14435 IPR016181 Acyl-CoA N-acyltransferase NIY04_14435 IPR030700 N-end rule aminoacyl transferase NIY04_14440 IPR006464 N-acetyltransferase RimI/Ard1 NIY04_14440 IPR016181 Acyl-CoA N-acyltransferase NIY04_14440 IPR000182 GNAT domain NIY04_14455 IPR004541 Translation elongation factor EFTu/EF1A, bacterial/organelle NIY04_14455 IPR009001 Translation elongation factor EF1A/initiation factor IF2gamma, C-terminal NIY04_14455 IPR009000 Translation protein, beta-barrel domain superfamily NIY04_14455 IPR000795 Transcription factor, GTP-binding domain NIY04_14455 IPR004160 Translation elongation factor EFTu/EF1A, C-terminal NIY04_14455 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIY04_14455 IPR031157 Tr-type G domain, conserved site NIY04_14455 IPR033720 Elongation factor Tu, domain 2 NIY04_14455 IPR004161 Translation elongation factor EFTu-like, domain 2 NIY04_14455 IPR041709 Elongation factor Tu (EF-Tu), GTP-binding domain NIY04_14455 IPR005225 Small GTP-binding protein domain NIY04_14460 IPR004540 Translation elongation factor EFG/EF2 NIY04_14460 IPR009000 Translation protein, beta-barrel domain superfamily NIY04_14460 IPR000795 Transcription factor, GTP-binding domain NIY04_14460 IPR005225 Small GTP-binding protein domain NIY04_14460 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup NIY04_14460 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIY04_14460 IPR000640 Elongation factor EFG, domain V-like NIY04_14460 IPR004161 Translation elongation factor EFTu-like, domain 2 NIY04_14460 IPR035649 EFG, domain V NIY04_14460 IPR035647 EF-G domain III/V-like NIY04_14460 IPR009022 Elongation factor G, domain III NIY04_14460 IPR041095 Elongation Factor G, domain II NIY04_14460 IPR031157 Tr-type G domain, conserved site NIY04_14460 IPR005517 Translation elongation factor EFG/EF2, domain IV NIY04_14460 IPR020568 Ribosomal protein S5 domain 2-type fold NIY04_14465 IPR036823 Ribosomal protein S7 domain superfamily NIY04_14465 IPR023798 Ribosomal protein S7 domain NIY04_14465 IPR000235 Ribosomal protein S5/S7 NIY04_14465 IPR020606 Ribosomal protein S7, conserved site NIY04_14465 IPR005717 Ribosomal protein S7, bacterial/organellar-type NIY04_14470 IPR005679 Ribosomal protein S12, bacterial-type NIY04_14470 IPR006032 Ribosomal protein S12/S23 NIY04_14470 IPR012340 Nucleic acid-binding, OB-fold NIY04_14480 IPR016039 Thiolase-like NIY04_14480 IPR020841 Polyketide synthase, beta-ketoacyl synthase domain NIY04_14480 IPR014030 Beta-ketoacyl synthase, N-terminal NIY04_14480 IPR018201 Beta-ketoacyl synthase, active site NIY04_14480 IPR000794 Beta-ketoacyl synthase NIY04_14480 IPR014031 Beta-ketoacyl synthase, C-terminal NIY04_14485 IPR005265 Protoporphyrinogen oxidase HemJ-like NIY04_14490 IPR014710 RmlC-like jelly roll fold NIY04_14490 IPR003829 Pirin, N-terminal domain NIY04_14490 IPR012093 Pirin NIY04_14490 IPR011051 RmlC-like cupin domain superfamily NIY04_14490 IPR008778 Pirin, C-terminal domain NIY04_14500 IPR003694 NAD(+) synthetase NIY04_14500 IPR014445 Glutamine-dependent NAD(+) synthetase NIY04_14500 IPR022310 NAD/GMP synthase NIY04_14500 IPR036526 Carbon-nitrogen hydrolase superfamily NIY04_14500 IPR003010 Carbon-nitrogen hydrolase NIY04_14500 IPR000132 Nitrilase/cyanide hydratase, conserved site NIY04_14500 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold NIY04_14515 IPR006058 2Fe-2S ferredoxin, iron-sulphur binding site NIY04_14515 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain NIY04_14515 IPR000951 Phthalate dioxygenase reductase NIY04_14515 IPR001433 Oxidoreductase FAD/NAD(P)-binding NIY04_14515 IPR017938 Riboflavin synthase-like beta-barrel NIY04_14515 IPR017927 FAD-binding domain, ferredoxin reductase-type NIY04_14515 IPR008333 Flavoprotein pyridine nucleotide cytochrome reductase-like, FAD-binding domain NIY04_14515 IPR039003 Carnitine monooxygenase reductase subunit NIY04_14515 IPR012675 Beta-grasp domain superfamily NIY04_14515 IPR036010 2Fe-2S ferredoxin-like superfamily NIY04_14515 IPR039261 Ferredoxin-NADP reductase (FNR), nucleotide-binding domain NIY04_14520 IPR016162 Aldehyde dehydrogenase, N-terminal NIY04_14520 IPR015590 Aldehyde dehydrogenase domain NIY04_14520 IPR010102 Succinate semialdehyde dehydrogenase NIY04_14520 IPR016163 Aldehyde dehydrogenase, C-terminal NIY04_14520 IPR016161 Aldehyde/histidinol dehydrogenase NIY04_14520 IPR029510 Aldehyde dehydrogenase, glutamic acid active site NIY04_14520 IPR016160 Aldehyde dehydrogenase, cysteine active site NIY04_14525 IPR001663 Aromatic-ring-hydroxylating dioxygenase, alpha subunit NIY04_14525 IPR015881 Aromatic-ring-hydroxylating dioxygenase, 2Fe-2S-binding site NIY04_14525 IPR036922 Rieske [2Fe-2S] iron-sulphur domain superfamily NIY04_14525 IPR017941 Rieske [2Fe-2S] iron-sulphur domain NIY04_14525 IPR039004 Carnitine monooxygenase oxygenase subunit NIY04_14525 IPR015879 Aromatic-ring-hydroxylating dioxygenase, alpha subunit, C-terminal domain NIY04_14530 IPR029058 Alpha/Beta hydrolase fold NIY04_14530 IPR002168 Lipase, GDXG, putative histidine active site NIY04_14530 IPR033140 Lipase, GDXG, putative serine active site NIY04_14530 IPR013094 Alpha/beta hydrolase fold-3 NIY04_14535 IPR000060 BCCT transporter family NIY04_14540 IPR011829 Tartrate dehydrogenase NIY04_14540 IPR024084 Isopropylmalate dehydrogenase-like domain NIY04_14540 IPR019818 Isocitrate/isopropylmalate dehydrogenase, conserved site NIY04_14545 IPR036390 Winged helix DNA-binding domain superfamily NIY04_14545 IPR000847 Transcription regulator HTH, LysR NIY04_14545 IPR036388 Winged helix-like DNA-binding domain superfamily NIY04_14545 IPR005119 LysR, substrate-binding NIY04_14565 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain NIY04_14565 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site NIY04_14570 IPR004821 Cytidyltransferase-like domain NIY04_14570 IPR001980 Phosphopantetheine adenylyltransferase NIY04_14570 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold NIY04_14575 IPR000037 SsrA-binding protein NIY04_14575 IPR023620 Small protein B NIY04_14575 IPR020081 SsrA-binding protein, conserved site NIY04_14580 IPR008254 Flavodoxin/nitric oxide synthase NIY04_14580 IPR005025 NADPH-dependent FMN reductase-like NIY04_14580 IPR029039 Flavoprotein-like superfamily NIY04_14585 IPR038371 Multi-copper polyphenol oxidoreductase superfamily NIY04_14585 IPR011324 Cytotoxic necrotizing factor-like, catalytic NIY04_14585 IPR003730 Multi-copper polyphenol oxidoreductase NIY04_14590 IPR036986 RNA-binding S4 domain superfamily NIY04_14590 IPR002942 RNA-binding S4 domain NIY04_14590 IPR020103 Pseudouridine synthase, catalytic domain superfamily NIY04_14590 IPR006224 Pseudouridine synthase, RluC/RluD, conserved site NIY04_14590 IPR006225 Pseudouridine synthase, RluC/RluD NIY04_14590 IPR006145 Pseudouridine synthase, RsuA/RluA NIY04_14595 IPR017689 Outer membrane protein assembly factor BamD NIY04_14595 IPR039565 Outer membrane lipoprotein BamD-like NIY04_14595 IPR011990 Tetratricopeptide-like helical domain superfamily NIY04_14600 IPR013264 DNA primase, catalytic core, N-terminal NIY04_14600 IPR037068 DNA primase, catalytic core, N-terminal domain superfamily NIY04_14600 IPR019475 DNA primase, DnaB-helicase binding domain NIY04_14600 IPR013173 DNA primase DnaG, DnaB-binding domain NIY04_14600 IPR036977 DNA Primase, CHC2-type zinc finger NIY04_14600 IPR030846 DNA primase DnaG, bacteria NIY04_14600 IPR034151 Bacterial DnaG primase, TOPRIM domain NIY04_14600 IPR006171 TOPRIM domain NIY04_14600 IPR002694 Zinc finger, CHC2-type NIY04_14600 IPR016136 DNA helicase DnaB, N-terminal/DNA primase DnaG, C-terminal NIY04_14600 IPR006295 DNA primase, DnaG NIY04_14605 IPR006151 Quinate/shikimate 5-dehydrogenase/glutamyl-tRNA reductase NIY04_14605 IPR000343 Tetrapyrrole biosynthesis, glutamyl-tRNA reductase NIY04_14605 IPR015896 Tetrapyrrole biosynthesis, glutamyl-tRNA reductase, dimerisation domain NIY04_14605 IPR015895 Tetrapyrrole biosynthesis, glutamyl-tRNA reductase, N-terminal NIY04_14605 IPR018214 Glutamyl-tRNA reductase, conserved site NIY04_14605 IPR036453 Glutamyl tRNA-reductase dimerization domain superfamily NIY04_14605 IPR036343 Glutamyl-tRNA reductase, N-terminal domain superfamily NIY04_14605 IPR036291 NAD(P)-binding domain superfamily NIY04_14615 IPR004565 Outer membrane lipoprotein LolB NIY04_14615 IPR029046 Lipoprotein localisation LolA/LolB/LppX NIY04_14620 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup NIY04_14620 IPR020568 Ribosomal protein S5 domain 2-type fold NIY04_14620 IPR006204 GHMP kinase N-terminal domain NIY04_14620 IPR036554 GHMP kinase, C-terminal domain superfamily NIY04_14620 IPR013750 GHMP kinase, C-terminal domain NIY04_14620 IPR004424 4-diphosphocytidyl-2C-methyl-D-erythritol kinase NIY04_14645 IPR037515 Ribose-phosphate pyrophosphokinase, bacterial-type NIY04_14645 IPR005946 Ribose-phosphate pyrophosphokinase NIY04_14645 IPR029057 Phosphoribosyltransferase-like NIY04_14645 IPR000836 Phosphoribosyltransferase domain NIY04_14645 IPR000842 Phosphoribosyl pyrophosphate synthetase, conserved site NIY04_14645 IPR029099 Ribose-phosphate pyrophosphokinase, N-terminal domain NIY04_14650 IPR011035 Ribosomal protein L25/Gln-tRNA synthetase, anti-codon-binding domain superfamily NIY04_14650 IPR020056 Ribosomal protein L25/Gln-tRNA synthetase, N-terminal NIY04_14650 IPR029751 Ribosomal protein L25 NIY04_14650 IPR020055 Ribosomal protein L25, short-form NIY04_14655 IPR018171 Peptidyl-tRNA hydrolase, conserved site NIY04_14655 IPR001328 Peptidyl-tRNA hydrolase NIY04_14655 IPR036416 Peptidyl-tRNA hydrolase superfamily NIY04_14660 IPR009010 Aspartate decarboxylase-like domain superfamily NIY04_14660 IPR003190 Aspartate decarboxylase NIY04_14675 IPR000422 3,4-dihydroxy-2-butanone 4-phosphate synthase, RibB NIY04_14675 IPR017945 DHBP synthase RibB-like alpha/beta domain superfamily NIY04_14685 IPR022998 Thiamine phosphate synthase/TenI NIY04_14685 IPR004399 Hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase NIY04_14685 IPR013749 Pyridoxamine kinase/Phosphomethylpyrimidine kinase NIY04_14685 IPR029056 Ribokinase-like NIY04_14685 IPR004305 Thiaminase-2/PQQC NIY04_14685 IPR036206 Thiamin phosphate synthase superfamily NIY04_14685 IPR034291 Thiamine phosphate synthase NIY04_14685 IPR016084 Haem oxygenase-like, multi-helical NIY04_14685 IPR013785 Aldolase-type TIM barrel NIY04_14690 IPR014004 Transport-associated and nodulation domain, bacteria NIY04_14690 IPR007055 BON domain NIY04_14690 IPR036779 LysM domain superfamily NIY04_14690 IPR018392 LysM domain NIY04_14695 IPR003231 Acyl carrier protein (ACP) NIY04_14695 IPR036736 ACP-like superfamily NIY04_14695 IPR006162 Phosphopantetheine attachment site NIY04_14695 IPR009081 Phosphopantetheine binding ACP domain NIY04_14700 IPR011284 3-oxoacyl-(acyl-carrier-protein) reductase NIY04_14700 IPR036291 NAD(P)-binding domain superfamily NIY04_14700 IPR020904 Short-chain dehydrogenase/reductase, conserved site NIY04_14700 IPR002347 Short-chain dehydrogenase/reductase SDR NIY04_14705 IPR016036 Malonyl-CoA ACP transacylase, ACP-binding NIY04_14705 IPR004410 Malonyl CoA-acyl carrier protein transacylase, FabD-type NIY04_14705 IPR014043 Acyl transferase NIY04_14705 IPR001227 Acyl transferase domain superfamily NIY04_14705 IPR024925 Malonyl CoA-acyl carrier protein transacylase NIY04_14705 IPR016035 Acyl transferase/acyl hydrolase/lysophospholipase NIY04_14710 IPR002677 Ribosomal protein L32p NIY04_14710 IPR011332 Zinc-binding ribosomal protein NIY04_14715 IPR003772 Large ribosomal RNA subunit accumulation protein YceD NIY04_14715 IPR039255 Large ribosomal RNA subunit accumulation protein YceD, bacteria NIY04_14720 IPR007411 Elongation factor P hydroxylase NIY04_14725 IPR006070 YrdC-like domain NIY04_14725 IPR017945 DHBP synthase RibB-like alpha/beta domain superfamily NIY04_14730 IPR003768 Segregation and condensation protein A NIY04_14735 IPR005234 Chromosome segregation/condensation protein ScpB NIY04_14735 IPR036390 Winged helix DNA-binding domain superfamily NIY04_14735 IPR036388 Winged helix-like DNA-binding domain superfamily NIY04_14740 IPR042092 Pseudouridine synthase, RsuA/RluB/E/F, catalytic domain NIY04_14740 IPR002942 RNA-binding S4 domain NIY04_14740 IPR018496 Pseudouridine synthase, RsuA/RluB/E/F, conserved site NIY04_14740 IPR036986 RNA-binding S4 domain superfamily NIY04_14740 IPR006145 Pseudouridine synthase, RsuA/RluA NIY04_14740 IPR020103 Pseudouridine synthase, catalytic domain superfamily NIY04_14740 IPR000748 Pseudouridine synthase, RsuA/RluB/E/F NIY04_14745 IPR004472 Dethiobiotin synthase BioD NIY04_14745 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIY04_14750 IPR011814 Malonyl-[acyl-carrier protein] O-methyltransferase BioC NIY04_14750 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase NIY04_14755 IPR015421 Pyridoxal phosphate-dependent transferase, major domain NIY04_14755 IPR001917 Aminotransferase, class-II, pyridoxal-phosphate binding site NIY04_14755 IPR004839 Aminotransferase, class I/classII NIY04_14755 IPR004723 8-amino-7-oxononanoate synthase, Archaea/Proteobacteria type NIY04_14755 IPR015424 Pyridoxal phosphate-dependent transferase NIY04_14755 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 NIY04_14760 IPR013785 Aldolase-type TIM barrel NIY04_14760 IPR007197 Radical SAM NIY04_14760 IPR015421 Pyridoxal phosphate-dependent transferase, major domain NIY04_14760 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 NIY04_14760 IPR015424 Pyridoxal phosphate-dependent transferase NIY04_14760 IPR006638 Elp3/MiaB/NifB NIY04_14760 IPR002684 Biotin synthase/Biotin biosynthesis bifunctional protein BioAB NIY04_14760 IPR005815 Adenosylmethionine--8-amino-7-oxononanoate aminotransferase BioA NIY04_14760 IPR010722 Biotin and thiamin synthesis-associated domain NIY04_14760 IPR005814 Aminotransferase class-III NIY04_14765 IPR000073 Alpha/beta hydrolase fold-1 NIY04_14765 IPR011814 Malonyl-[acyl-carrier protein] O-methyltransferase BioC NIY04_14765 IPR013216 Methyltransferase type 11 NIY04_14765 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase NIY04_14765 IPR029058 Alpha/Beta hydrolase fold NIY04_14770 IPR023214 HAD superfamily NIY04_14770 IPR003337 Trehalose-phosphatase NIY04_14770 IPR006379 HAD-superfamily hydrolase, subfamily IIB NIY04_14770 IPR036412 HAD-like superfamily NIY04_14775 IPR001830 Glycosyl transferase, family 20 NIY04_14775 IPR012766 Alpha,alpha-trehalose-phosphate synthase NIY04_14780 IPR011701 Major facilitator superfamily NIY04_14780 IPR020846 Major facilitator superfamily domain NIY04_14780 IPR036259 MFS transporter superfamily NIY04_14785 IPR009040 Ferritin-like diiron domain NIY04_14785 IPR002024 Bacterioferritin NIY04_14785 IPR012347 Ferritin-like NIY04_14785 IPR009078 Ferritin-like superfamily NIY04_14785 IPR008331 Ferritin/DPS protein domain NIY04_14790 IPR012340 Nucleic acid-binding, OB-fold NIY04_14790 IPR004150 NAD-dependent DNA ligase, OB-fold NIY04_14790 IPR003583 Helix-hairpin-helix DNA-binding motif, class 1 NIY04_14790 IPR004149 Zinc-finger, NAD-dependent DNA ligase C4-type NIY04_14790 IPR010994 RuvA domain 2-like NIY04_14790 IPR013840 NAD-dependent DNA ligase, N-terminal NIY04_14790 IPR001357 BRCT domain NIY04_14790 IPR001679 NAD-dependent DNA ligase NIY04_14790 IPR033136 NAD-dependent DNA ligase, conserved site NIY04_14790 IPR018239 NAD-dependent DNA ligase, active site NIY04_14790 IPR041663 DisA/LigA, helix-hairpin-helix motif NIY04_14790 IPR036420 BRCT domain superfamily NIY04_14790 IPR013839 NAD-dependent DNA ligase, adenylation NIY04_14800 IPR011890 Structural maintenance of chromosomes protein, prokaryotic NIY04_14800 IPR010935 SMCs flexible hinge NIY04_14800 IPR036277 SMCs flexible hinge superfamily NIY04_14800 IPR003395 RecF/RecN/SMC, N-terminal NIY04_14800 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIY04_14800 IPR024704 Structural maintenance of chromosomes protein NIY04_14810 IPR002781 Transmembrane protein TauE-like NIY04_14820 IPR004619 Type III pantothenate kinase NIY04_14825 IPR003593 AAA+ ATPase domain NIY04_14825 IPR004780 Signal recognition particle protein NIY04_14825 IPR036891 Signal recognition particle, SRP54 subunit, M-domain superfamily NIY04_14825 IPR013822 Signal recognition particle SRP54, helical bundle NIY04_14825 IPR004125 Signal recognition particle, SRP54 subunit, M-domain NIY04_14825 IPR022941 Signal recognition particle, SRP54 subunit NIY04_14825 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIY04_14825 IPR042101 Signal recognition particle SRP54, N-terminal domain superfamily NIY04_14825 IPR000897 Signal recognition particle, SRP54 subunit, GTPase domain NIY04_14835 IPR013785 Aldolase-type TIM barrel NIY04_14835 IPR035587 DUS-like, FMN-binding domain NIY04_14835 IPR032886 tRNA-dihydrouridine(16) synthase NIY04_14835 IPR042270 tRNA-dihydrouridine(16) synthase, C-terminal NIY04_14835 IPR001269 tRNA-dihydrouridine synthase NIY04_14835 IPR018517 tRNA-dihydrouridine synthase, conserved site NIY04_14865 IPR033704 dUTPase, trimeric NIY04_14865 IPR036157 dUTPase-like superfamily NIY04_14865 IPR011962 dCTP deaminase NIY04_14865 IPR029054 dUTPase-like NIY04_14880 IPR035994 Nucleoside phosphorylase superfamily NIY04_14880 IPR010049 MTA/SAH nucleosidase NIY04_14880 IPR000845 Nucleoside phosphorylase domain NIY04_14885 IPR033756 Flagellum site-determining protein YlxH/ Fe-S cluster assembling factor NBP35 NIY04_14885 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIY04_14885 IPR000808 Mrp, conserved site NIY04_14885 IPR019591 Mrp/NBP35 ATP-binding protein NIY04_14885 IPR034904 Fe-S cluster assembly domain superfamily NIY04_14895 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold NIY04_14895 IPR029038 Methionyl-tRNA synthetase, Zn-domain NIY04_14895 IPR012340 Nucleic acid-binding, OB-fold NIY04_14895 IPR004495 Methionyl-tRNA synthetase, beta subunit, C-terminal NIY04_14895 IPR041872 Methionyl-tRNA synthetase, anticodon-binding domain NIY04_14895 IPR002547 tRNA-binding domain NIY04_14895 IPR015413 Methionyl/Leucyl tRNA synthetase NIY04_14895 IPR033911 Methioninyl-tRNA synthetase core domain NIY04_14895 IPR009080 Aminoacyl-tRNA synthetase, class Ia, anticodon-binding NIY04_14895 IPR014758 Methionyl-tRNA synthetase NIY04_14895 IPR023458 Methionine-tRNA ligase, type 1 NIY04_14895 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site NIY04_14920 IPR039562 Membrane fusion protein, biotin-lipoyl like domain NIY04_14925 IPR036052 Tryptophan synthase beta subunit-like PLP-dependent enzyme NIY04_14925 IPR001926 Pyridoxal-phosphate dependent enzyme NIY04_14925 IPR005966 D-cysteine desulfhydrase NIY04_14925 IPR027278 1-aminocyclopropane-1-carboxylate deaminase/D-cysteine desulfhydrase NIY04_14930 IPR023166 HI0933-like insert domain superfamily NIY04_14930 IPR036188 FAD/NAD(P)-binding domain superfamily NIY04_14930 IPR004792 3-Dehydro-bile acid delta(4,6)-reductase-like NIY04_14940 IPR008910 Conserved TM helix NIY04_14955 IPR017927 FAD-binding domain, ferredoxin reductase-type NIY04_14955 IPR008333 Flavoprotein pyridine nucleotide cytochrome reductase-like, FAD-binding domain NIY04_14955 IPR017938 Riboflavin synthase-like beta-barrel NIY04_14955 IPR001433 Oxidoreductase FAD/NAD(P)-binding NIY04_14955 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase NIY04_14955 IPR039261 Ferredoxin-NADP reductase (FNR), nucleotide-binding domain NIY04_14955 IPR033892 Ferredoxin--NADP reductase, bacteria NIY04_14960 IPR036390 Winged helix DNA-binding domain superfamily NIY04_14960 IPR036388 Winged helix-like DNA-binding domain superfamily NIY04_14960 IPR005119 LysR, substrate-binding NIY04_14960 IPR000847 Transcription regulator HTH, LysR NIY04_14970 IPR019844 Cold-shock (CSD) domain NIY04_14970 IPR002059 Cold-shock protein, DNA-binding NIY04_14970 IPR012340 Nucleic acid-binding, OB-fold NIY04_14970 IPR012156 Cold shock, CspA NIY04_14970 IPR011129 Cold shock domain NIY04_14975 IPR005765 Uracil phosphoribosyl transferase NIY04_14975 IPR034332 Uracil phosphoribosyltransferase, bacterial-type NIY04_14975 IPR029057 Phosphoribosyltransferase-like NIY04_14975 IPR000836 Phosphoribosyltransferase domain NIY04_14980 IPR010096 NAD(P)H-quinone oxidoreductase, subunit N/subunit 2 NIY04_14980 IPR001750 NADH:quinone oxidoreductase/Mrp antiporter, membrane subunit NIY04_14985 IPR001750 NADH:quinone oxidoreductase/Mrp antiporter, membrane subunit NIY04_14985 IPR003918 NADH:ubiquinone oxidoreductase NIY04_14985 IPR010227 NADH-quinone oxidoreductase, chain M/4 NIY04_14990 IPR001750 NADH:quinone oxidoreductase/Mrp antiporter, membrane subunit NIY04_14990 IPR018393 NADH-plastoquinone oxidoreductase, chain 5 subgroup NIY04_14990 IPR003945 NADH-plastoquinone oxidoreductase, chain 5 NIY04_14990 IPR001516 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminal NIY04_14995 IPR039428 NADH-ubiquinone oxidoreductase chain 4L/Mnh complex subunit C1-like NIY04_14995 IPR001133 NADH-ubiquinone oxidoreductase chain 4L/K NIY04_15000 IPR001457 NADH:ubiquinone/plastoquinone oxidoreductase, chain 6 NIY04_15000 IPR042106 NADH-ubiquinone/plastoquinone oxidoreductase chain 6, subunit NuoJ NIY04_15005 IPR010226 NADH-quinone oxidoreductase, chain I NIY04_15005 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain NIY04_15005 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site NIY04_15010 IPR018086 NADH:ubiquinone oxidoreductase, subunit 1, conserved site NIY04_15010 IPR001694 NADH:ubiquinone oxidoreductase, subunit 1/F420H2 oxidoreductase subunit H NIY04_15015 IPR010228 NADH:ubiquinone oxidoreductase, subunit G NIY04_15015 IPR036010 2Fe-2S ferredoxin-like superfamily NIY04_15015 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain NIY04_15015 IPR009010 Aspartate decarboxylase-like domain superfamily NIY04_15015 IPR019574 NADH:ubiquinone oxidoreductase, subunit G, iron-sulphur binding NIY04_15015 IPR000283 NADH:ubiquinone oxidoreductase, 75kDa subunit, conserved site NIY04_15015 IPR006963 Molybdopterin oxidoreductase, 4Fe-4S domain NIY04_15015 IPR006656 Molybdopterin oxidoreductase NIY04_15020 IPR037207 NADH-ubiquinone oxidoreductase 51kDa subunit, iron-sulphur binding domain superfamily NIY04_15020 IPR019554 Soluble ligand binding domain NIY04_15020 IPR019575 NADH-ubiquinone oxidoreductase 51kDa subunit, iron-sulphur binding domain NIY04_15020 IPR037225 NADH-ubiquinone oxidoreductase 51kDa subunit, FMN-binding domain superfamily NIY04_15020 IPR011538 NADH-ubiquinone oxidoreductase 51kDa subunit, FMN-binding domain NIY04_15020 IPR011537 NADH ubiquinone oxidoreductase, F subunit NIY04_15020 IPR001949 NADH:ubiquinone oxidoreductase, 51kDa subunit, conserved site NIY04_15025 IPR002023 NADH-quinone oxidoreductase subunit E-like NIY04_15025 IPR042128 NuoE domain NIY04_15025 IPR041921 NADH-quinone oxidoreductase subunit E, N-terminal NIY04_15025 IPR036249 Thioredoxin-like superfamily NIY04_15030 IPR020396 NADH:ubiquinone oxidoreductase, 30kDa subunit, conserved site NIY04_15030 IPR029014 [NiFe]-hydrogenase, large subunit NIY04_15030 IPR022885 NAD(P)H-quinone oxidoreductase subunit D/H NIY04_15030 IPR014029 NADH:ubiquinone oxidoreductase, 49kDa subunit, conserved site NIY04_15030 IPR001268 NADH:ubiquinone oxidoreductase, 30kDa subunit NIY04_15030 IPR001135 NADH-quinone oxidoreductase, subunit D NIY04_15030 IPR038290 NADH-quinone oxidoreductase, subunit D superfamily NIY04_15030 IPR023062 NADH dehydrogenase, subunit CD NIY04_15030 IPR010218 NADH dehydrogenase, subunit C NIY04_15030 IPR037232 NADH:ubiquinone oxidoreductase, 30kDa subunit superfamily NIY04_15035 IPR006137 NADH:ubiquinone oxidoreductase-like, 20kDa subunit NIY04_15035 IPR006138 NADH-ubiquinone oxidoreductase, 20 Kd subunit NIY04_15040 IPR000440 NADH:ubiquinone/plastoquinone oxidoreductase, chain 3 NIY04_15040 IPR023043 NAD(P)H-quinone oxidoreductase subunit 3, bacterial/plastid NIY04_15040 IPR038430 NADH:ubiquinone oxidoreductase, subunit 3 superfamily NIY04_15045 IPR033416 Periplasmic sensor domain CHASE7 NIY04_15045 IPR000160 GGDEF domain NIY04_15045 IPR029787 Nucleotide cyclase NIY04_15055 IPR003594 Histidine kinase/HSP90-like ATPase NIY04_15055 IPR036890 Histidine kinase/HSP90-like ATPase superfamily NIY04_15055 IPR005467 Histidine kinase domain NIY04_15055 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain NIY04_15055 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily NIY04_15055 IPR004358 Signal transduction histidine kinase-related protein, C-terminal NIY04_15055 IPR003660 HAMP domain NIY04_15060 IPR036388 Winged helix-like DNA-binding domain superfamily NIY04_15060 IPR039420 Transcriptional regulatory protein WalR-like NIY04_15060 IPR016032 Signal transduction response regulator, C-terminal effector NIY04_15060 IPR001867 OmpR/PhoB-type DNA-binding domain NIY04_15060 IPR011006 CheY-like superfamily NIY04_15060 IPR001789 Signal transduction response regulator, receiver domain NIY04_15070 IPR005144 ATP-cone domain NIY04_15070 IPR013346 Ribonucleotide reductase, class I , alpha subunit NIY04_15070 IPR000788 Ribonucleotide reductase large subunit, C-terminal NIY04_15070 IPR013509 Ribonucleotide reductase large subunit, N-terminal NIY04_15070 IPR008926 Ribonucleotide reductase R1 subunit, N-terminal NIY04_15070 IPR039718 Ribonucleoside-diphosphate reductase large subunit NIY04_15080 IPR009078 Ferritin-like superfamily NIY04_15080 IPR000358 Ribonucleotide reductase small subunit family NIY04_15080 IPR033909 Ribonucleotide reductase small subunit NIY04_15080 IPR012348 Ribonucleotide reductase-like NIY04_15095 IPR031409 Darcynin NIY04_15120 IPR031409 Darcynin NIY04_15135 IPR002563 Flavin reductase like domain NIY04_15135 IPR012349 FMN-binding split barrel NIY04_15135 IPR019917 FMN reductase (NADH) RutF NIY04_15140 IPR006276 Cobalamin-independent methionine synthase NIY04_15140 IPR002629 Cobalamin-independent methionine synthase MetE, C-terminal/archaeal NIY04_15140 IPR038071 UROD/MetE-like superfamily NIY04_15140 IPR013215 Cobalamin-independent methionine synthase MetE, N-terminal NIY04_15150 IPR036390 Winged helix DNA-binding domain superfamily NIY04_15150 IPR000847 Transcription regulator HTH, LysR NIY04_15150 IPR036388 Winged helix-like DNA-binding domain superfamily NIY04_15150 IPR005119 LysR, substrate-binding NIY04_15155 IPR001123 Amino acid exporter protein, LeuE-type NIY04_15165 IPR032687 HTH-type transcriptional regulator AraC-type, N-terminal NIY04_15165 IPR009057 Homeobox-like domain superfamily NIY04_15165 IPR018060 DNA binding HTH domain, AraC-type NIY04_15165 IPR020449 Transcription regulator HTH, AraC- type NIY04_15170 IPR017439 Amidohydrolase NIY04_15170 IPR002933 Peptidase M20 NIY04_15170 IPR011650 Peptidase M20, dimerisation domain NIY04_15170 IPR036264 Bacterial exopeptidase dimerisation domain NIY04_15180 IPR036390 Winged helix DNA-binding domain superfamily NIY04_15180 IPR005119 LysR, substrate-binding NIY04_15180 IPR000847 Transcription regulator HTH, LysR NIY04_15180 IPR036388 Winged helix-like DNA-binding domain superfamily NIY04_15185 IPR004736 MFS transporter, metabolite:H symporter NIY04_15185 IPR036259 MFS transporter superfamily NIY04_15185 IPR005829 Sugar transporter, conserved site NIY04_15185 IPR011701 Major facilitator superfamily NIY04_15185 IPR020846 Major facilitator superfamily domain NIY04_15195 IPR005119 LysR, substrate-binding NIY04_15195 IPR000847 Transcription regulator HTH, LysR NIY04_15195 IPR036388 Winged helix-like DNA-binding domain superfamily NIY04_15195 IPR036390 Winged helix DNA-binding domain superfamily NIY04_15200 IPR012286 Tetrahaem cytochrome domain NIY04_15200 IPR036280 Multiheme cytochrome superfamily NIY04_15200 IPR011031 Multihaem cytochrome NIY04_15200 IPR010960 Flavocytochrome c NIY04_15200 IPR036188 FAD/NAD(P)-binding domain superfamily NIY04_15200 IPR003953 FAD-dependent oxidoreductase 2, FAD binding domain NIY04_15200 IPR027477 Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain superfamily NIY04_15205 IPR036197 NarG-like superfamily NIY04_15205 IPR012830 Citrate utilization protein B NIY04_15210 IPR003673 CoA-transferase family III NIY04_15210 IPR023606 CoA-transferase family III domain superfamily NIY04_15215 IPR020846 Major facilitator superfamily domain NIY04_15215 IPR004746 Major facilitator superfamily, aromatic acid:H+ symporter family NIY04_15215 IPR011701 Major facilitator superfamily NIY04_15215 IPR036259 MFS transporter superfamily NIY04_15215 IPR005829 Sugar transporter, conserved site NIY04_15220 IPR006091 Acyl-CoA oxidase/dehydrogenase, central domain NIY04_15220 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal NIY04_15220 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal NIY04_15220 IPR037069 Acyl-CoA dehydrogenase/oxidase, N-terminal domain superfamily NIY04_15220 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily NIY04_15220 IPR006089 Acyl-CoA dehydrogenase, conserved site NIY04_15220 IPR036250 Acyl-CoA dehydrogenase-like, C-terminal NIY04_15225 IPR036390 Winged helix DNA-binding domain superfamily NIY04_15225 IPR036388 Winged helix-like DNA-binding domain superfamily NIY04_15225 IPR000847 Transcription regulator HTH, LysR NIY04_15225 IPR005119 LysR, substrate-binding NIY04_15230 IPR036291 NAD(P)-binding domain superfamily NIY04_15230 IPR020843 Polyketide synthase, enoylreductase domain NIY04_15230 IPR013149 Alcohol dehydrogenase, C-terminal NIY04_15230 IPR013154 Alcohol dehydrogenase, N-terminal NIY04_15230 IPR002328 Alcohol dehydrogenase, zinc-type, conserved site NIY04_15230 IPR011032 GroES-like superfamily NIY04_15235 IPR006650 Adenosine/AMP deaminase active site NIY04_15235 IPR001365 Adenosine/AMP deaminase domain NIY04_15235 IPR028893 Adenosine deaminase NIY04_15235 IPR006330 Adenosine/adenine deaminase NIY04_15235 IPR032466 Metal-dependent hydrolase NIY04_15260 IPR003473 Quinolinate synthetase A NIY04_15260 IPR036094 Quinolinate synthetase A superfamily NIY04_15260 IPR023513 Quinolinate synthase A, type 1 NIY04_15265 IPR042195 ArgJ beta chain, C-terminal domain NIY04_15265 IPR016117 ArgJ-like domain superfamily NIY04_15265 IPR002813 Arginine biosynthesis protein ArgJ NIY04_15270 IPR014048 Methylated-DNA-[protein]-cysteine S-methyltransferase, DNA binding NIY04_15270 IPR001497 Methylated-DNA-[protein]-cysteine S-methyltransferase, active site NIY04_15270 IPR036388 Winged helix-like DNA-binding domain superfamily NIY04_15270 IPR036631 Methylated DNA-protein cysteine methyltransferase domain superfamily NIY04_15270 IPR023546 Methylated-DNA--protein-cysteine methyltransferase NIY04_15270 IPR008332 Methylguanine DNA methyltransferase, ribonuclease-like domain NIY04_15270 IPR036217 Methylated DNA-protein cysteine methyltransferase, DNA binding domain NIY04_15275 IPR000390 Small multidrug resistance protein family NIY04_15290 IPR019546 Twin-arginine translocation pathway, signal sequence, bacterial/archaeal NIY04_15290 IPR001117 Multicopper oxidase, type 1 NIY04_15290 IPR006311 Twin-arginine translocation pathway, signal sequence NIY04_15290 IPR011707 Multicopper oxidase, type 3 NIY04_15290 IPR006376 Copper-resistance protein CopA NIY04_15290 IPR033138 Multicopper oxidases, conserved site NIY04_15290 IPR002355 Multicopper oxidase, copper-binding site NIY04_15290 IPR008972 Cupredoxin NIY04_15290 IPR034284 Copper resistance protein, first cupredoxin domain NIY04_15290 IPR034282 Copper resistance protein CopA, second cupredoxin domain NIY04_15290 IPR011706 Multicopper oxidase, type 2 NIY04_15290 IPR034279 Copper resistance protein, third cupredoxin domain NIY04_15300 IPR000150 Cof family NIY04_15300 IPR036412 HAD-like superfamily NIY04_15300 IPR006379 HAD-superfamily hydrolase, subfamily IIB NIY04_15300 IPR023214 HAD superfamily NIY04_15305 IPR011060 Ribulose-phosphate binding barrel NIY04_15305 IPR026019 Ribulose-phosphate 3-epimerase NIY04_15305 IPR000056 Ribulose-phosphate 3-epimerase-like NIY04_15305 IPR013785 Aldolase-type TIM barrel NIY04_15315 IPR029058 Alpha/Beta hydrolase fold NIY04_15315 IPR000801 Putative esterase NIY04_15315 IPR014186 S-formylglutathione hydrolase NIY04_15325 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase NIY04_15325 IPR007536 Ribosomal RNA small subunit methyltransferase J NIY04_15330 IPR022496 tRNA threonylcarbamoyl adenosine modification protein TsaB NIY04_15330 IPR000905 Gcp-like domain NIY04_15335 IPR001451 Hexapeptide repeat NIY04_15335 IPR011004 Trimeric LpxA-like superfamily NIY04_15340 IPR023735 Uncharacterised nudix hydrolase NudL NIY04_15340 IPR000059 NUDIX hydrolase, NudL, conserved site NIY04_15340 IPR015797 NUDIX hydrolase-like domain superfamily NIY04_15340 IPR000086 NUDIX hydrolase domain NIY04_15380 IPR005802 Aminodeoxychorismate synthase, component I NIY04_15380 IPR005801 ADC synthase NIY04_15380 IPR006805 Anthranilate synthase component I, N-terminal NIY04_15380 IPR015890 Chorismate-utilising enzyme, C-terminal NIY04_15380 IPR019999 Anthranilate synthase component I-like NIY04_15385 IPR004839 Aminotransferase, class I/classII NIY04_15385 IPR005861 Histidinol-phosphate aminotransferase family NIY04_15385 IPR015424 Pyridoxal phosphate-dependent transferase NIY04_15385 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 NIY04_15385 IPR015421 Pyridoxal phosphate-dependent transferase, major domain NIY04_15390 IPR012131 Histidinol dehydrogenase NIY04_15390 IPR016161 Aldehyde/histidinol dehydrogenase NIY04_15390 IPR001692 Histidinol dehydrogenase, conserved site NIY04_15390 IPR022695 Histidinol dehydrogenase, monofunctional NIY04_15395 IPR013820 ATP phosphoribosyltransferase, catalytic domain NIY04_15395 IPR018198 ATP phosphoribosyltransferase, conserved site NIY04_15395 IPR001348 ATP phosphoribosyltransferase HisG NIY04_15395 IPR024893 ATP phosphoribosyltransferase HisG, short form NIY04_15400 IPR002110 Ankyrin repeat NIY04_15400 IPR020683 Ankyrin repeat-containing domain NIY04_15400 IPR036968 Enolpyruvate transferase domain superfamily NIY04_15400 IPR001986 Enolpyruvate transferase domain NIY04_15400 IPR005750 UDP-N-acetylglucosamine 1-carboxyvinyltransferase NIY04_15400 IPR013792 RNA 3'-terminal phosphate cyclase/enolpyruvate transferase, alpha/beta NIY04_15405 IPR002634 BolA protein NIY04_15405 IPR036065 BolA-like superfamily NIY04_15410 IPR036567 Ribosome hibernation promotion factor-like NIY04_15410 IPR003489 Ribosome hibernation promoting factor/RaiA NIY04_15415 IPR000394 RNA polymerase sigma factor 54 NIY04_15415 IPR007046 RNA polymerase sigma factor 54, core-binding domain NIY04_15415 IPR007634 RNA polymerase sigma factor 54, DNA-binding NIY04_15415 IPR038709 RNA polymerase sigma-54 factor, core-binding domain superfamily NIY04_15460 IPR003010 Carbon-nitrogen hydrolase NIY04_15460 IPR036526 Carbon-nitrogen hydrolase superfamily NIY04_15460 IPR001110 Uncharacterised protein family UPF0012, conserved site NIY04_15470 IPR036390 Winged helix DNA-binding domain superfamily NIY04_15470 IPR036388 Winged helix-like DNA-binding domain superfamily NIY04_15470 IPR000835 MarR-type HTH domain NIY04_15475 IPR015946 K homology domain-like, alpha/beta NIY04_15475 IPR019953 Organic hydroperoxide resistance protein famiy NIY04_15475 IPR003718 OsmC/Ohr family NIY04_15475 IPR036102 OsmC/Ohr superfamily NIY04_15480 IPR001482 Type II/IV secretion system protein NIY04_15480 IPR037257 General secretory system II, protein E, N-terminal superfamily NIY04_15480 IPR013369 Type II secretion system GspE NIY04_15480 IPR042181 Type II secretion system, protein E, N-terminal NIY04_15480 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIY04_15500 IPR036397 Ribonuclease H superfamily NIY04_15500 IPR002562 3'-5' exonuclease domain NIY04_15500 IPR020046 5'-3' exonuclease, alpha-helical arch, N-terminal NIY04_15500 IPR002421 5'-3' exonuclease, N-terminal NIY04_15500 IPR036279 5'-3' exonuclease, C-terminal domain superfamily NIY04_15500 IPR019760 DNA-directed DNA polymerase, family A, conserved site NIY04_15500 IPR001098 DNA-directed DNA polymerase, family A, palm domain NIY04_15500 IPR020045 DNA polymerase I-like, H3TH domain NIY04_15500 IPR018320 DNA polymerase 1 NIY04_15500 IPR002298 DNA polymerase A NIY04_15500 IPR008918 Helix-hairpin-helix motif, class 2 NIY04_15500 IPR029060 PIN-like domain superfamily NIY04_15500 IPR012337 Ribonuclease H-like superfamily NIY04_15505 IPR003425 CCB3/YggT NIY04_15510 IPR029036 Pyrroline-5-carboxylate reductase, dimerisation domain NIY04_15510 IPR028939 Pyrroline-5-carboxylate reductase, catalytic, N-terminal NIY04_15510 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily NIY04_15510 IPR036291 NAD(P)-binding domain superfamily NIY04_15510 IPR000304 Pyrroline-5-carboxylate reductase NIY04_15515 IPR012796 Lysidine-tRNA(Ile) synthetase, C-terminal NIY04_15515 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold NIY04_15515 IPR011063 tRNA(Ile)-lysidine/2-thiocytidine synthase, N-terminal NIY04_15515 IPR012094 tRNA(Ile)-lysidine synthase NIY04_15515 IPR012795 tRNA(Ile)-lysidine synthase, N-terminal NIY04_15515 IPR015262 tRNA(Ile)-lysidine synthase , substrate-binding domain NIY04_15520 IPR001095 Acetyl-CoA carboxylase, alpha subunit NIY04_15520 IPR029045 ClpP/crotonase-like domain superfamily NIY04_15520 IPR011763 Acetyl-coenzyme A carboxyltransferase, C-terminal NIY04_15525 IPR022371 Exopolyphosphatase NIY04_15525 IPR003695 Ppx/GppA phosphatase NIY04_15525 IPR030673 Pyrophosphatase, GppA/Ppx-type NIY04_15530 IPR013766 Thioredoxin domain NIY04_15530 IPR036249 Thioredoxin-like superfamily NIY04_15530 IPR017937 Thioredoxin, conserved site NIY04_15530 IPR005746 Thioredoxin NIY04_15535 IPR011112 Rho termination factor, N-terminal NIY04_15535 IPR011113 Rho termination factor, RNA-binding domain NIY04_15535 IPR036269 Rho termination factor, N-terminal domain superfamily NIY04_15535 IPR041703 Transcription termination factor Rho, ATP binding domain NIY04_15535 IPR004665 Transcription termination factor Rho NIY04_15535 IPR012340 Nucleic acid-binding, OB-fold NIY04_15535 IPR011129 Cold shock domain NIY04_15535 IPR000194 ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain NIY04_15535 IPR003593 AAA+ ATPase domain NIY04_15535 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIY04_15550 IPR000119 Histone-like DNA-binding protein NIY04_15550 IPR020816 Histone-like DNA-binding protein, conserved site NIY04_15550 IPR010992 Integration host factor (IHF)-like DNA-binding domain superfamily NIY04_15550 IPR005684 Integration host factor, alpha subunit NIY04_15555 IPR041616 Phenylalanyl tRNA synthetase beta chain, core domain NIY04_15555 IPR005147 tRNA synthetase, B5-domain NIY04_15555 IPR033714 Phenylalanly tRNA synthetase, tRNA-binding-domain NIY04_15555 IPR002547 tRNA-binding domain NIY04_15555 IPR020825 Phenylalanyl-tRNA synthetase, B3/B4 NIY04_15555 IPR005146 B3/B4 tRNA-binding domain NIY04_15555 IPR012340 Nucleic acid-binding, OB-fold NIY04_15555 IPR036690 Ferrodoxin-fold anticodon-binding domain superfamily NIY04_15555 IPR005121 Ferrodoxin-fold anticodon-binding domain NIY04_15555 IPR009061 Putative DNA-binding domain superfamily NIY04_15555 IPR004532 Phenylalanine-tRNA ligase, class IIc, beta subunit NIY04_15560 IPR004188 Phenylalanine-tRNA ligase, class II, N-terminal NIY04_15560 IPR022911 Phenylalanine-tRNA ligase alpha chain 1, bacterial NIY04_15560 IPR002319 Phenylalanyl-tRNA synthetase NIY04_15560 IPR010978 Class I and II aminoacyl-tRNA synthetase, tRNA-binding arm NIY04_15560 IPR006195 Aminoacyl-tRNA synthetase, class II NIY04_15560 IPR004529 Phenylalanyl-tRNA synthetase, class IIc, alpha subunit NIY04_15580 IPR005813 Ribosomal protein L20 NIY04_15580 IPR035566 Ribosomal protein L20, C-terminal NIY04_15585 IPR021137 Ribosomal protein L35 NIY04_15585 IPR018265 Ribosomal protein L35, conserved site NIY04_15585 IPR001706 Ribosomal protein L35, non-mitochondrial NIY04_15585 IPR037229 Ribosomal protein L35 superfamily NIY04_15595 IPR004751 Drug antiporter protein NIY04_15595 IPR011701 Major facilitator superfamily NIY04_15595 IPR020846 Major facilitator superfamily domain NIY04_15595 IPR036259 MFS transporter superfamily NIY04_15600 IPR032816 SNARE associated Golgi protein NIY04_15605 IPR036282 Glutathione S-transferase, C-terminal domain superfamily NIY04_15605 IPR010987 Glutathione S-transferase, C-terminal-like NIY04_15605 IPR004045 Glutathione S-transferase, N-terminal NIY04_15605 IPR004046 Glutathione S-transferase, C-terminal NIY04_15605 IPR036249 Thioredoxin-like superfamily NIY04_15610 IPR036788 Translation initiation factor 3 (IF-3), C-terminal domain superfamily NIY04_15610 IPR001288 Translation initiation factor 3 NIY04_15610 IPR019815 Translation initiation factor 3, C-terminal NIY04_15610 IPR019814 Translation initiation factor 3, N-terminal NIY04_15610 IPR036787 Translation initiation factor 3 (IF-3), N-terminal domain superfamily NIY04_15615 IPR033728 Threonine-tRNA ligase catalytic core domain NIY04_15615 IPR018163 Threonyl/alanyl tRNA synthetase, class II-like, putative editing domain superfamily NIY04_15615 IPR002320 Threonine-tRNA ligase, class IIa NIY04_15615 IPR012676 TGS-like NIY04_15615 IPR012947 Threonyl/alanyl tRNA synthetase, SAD NIY04_15615 IPR012675 Beta-grasp domain superfamily NIY04_15615 IPR036621 Anticodon-binding domain superfamily NIY04_15615 IPR004154 Anticodon-binding NIY04_15615 IPR006195 Aminoacyl-tRNA synthetase, class II NIY04_15615 IPR002314 Aminoacyl-tRNA synthetase, class II (G/ P/ S/T) NIY04_15615 IPR004095 TGS NIY04_15620 IPR025110 AMP-binding enzyme, C-terminal domain NIY04_15620 IPR020845 AMP-binding, conserved site NIY04_15620 IPR000873 AMP-dependent synthetase/ligase NIY04_15620 IPR042099 AMP-dependent synthetase-like superfamily NIY04_15625 IPR023153 PSPTO4464-like domain superfamily NIY04_15625 IPR006839 Ribosome-associated, YjgA NIY04_15630 IPR000032 Phosphocarrier protein HPr-like NIY04_15630 IPR035895 HPr-like superfamily NIY04_15630 IPR001020 Phosphotransferase system, HPr histidine phosphorylation site NIY04_15630 IPR002114 Phosphotransferase system, HPr serine phosphorylation site NIY04_15635 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIY04_15635 IPR005337 RapZ-like family NIY04_15640 IPR042176 Pantoate-beta-alanine ligase, C-terminal domain NIY04_15640 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold NIY04_15640 IPR004821 Cytidyltransferase-like domain NIY04_15640 IPR003721 Pantoate-beta-alanine ligase NIY04_15645 IPR003700 Ketopantoate hydroxymethyltransferase NIY04_15645 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain superfamily NIY04_15645 IPR040442 Pyruvate kinase-like domain superfamily NIY04_15650 IPR000550 7,8-Dihydro-6-hydroxymethylpterin-pyrophosphokinase, HPPK NIY04_15650 IPR035907 7,8-Dihydro-6-hydroxymethylpterin-pyrophosphokinase HPPK superfamily NIY04_15655 IPR002646 Poly A polymerase, head domain NIY04_15655 IPR010206 Poly(A) polymerase I NIY04_15655 IPR025866 Polymerase A arginine-rich C-terminal domain NIY04_15655 IPR032828 tRNA nucleotidyltransferase/poly(A) polymerase, RNA and SrmB- binding domain NIY04_15660 IPR004509 Competence protein ComEA, helix-hairpin-helix domain NIY04_15660 IPR010994 RuvA domain 2-like NIY04_15665 IPR004518 NTP pyrophosphohydrolase MazG, putative catalytic core NIY04_15665 IPR011551 NTP pyrophosphohydrolase MazG NIY04_15670 IPR002347 Short-chain dehydrogenase/reductase SDR NIY04_15670 IPR020904 Short-chain dehydrogenase/reductase, conserved site NIY04_15670 IPR036291 NAD(P)-binding domain superfamily NIY04_15675 IPR002912 ACT domain NIY04_15675 IPR012675 Beta-grasp domain superfamily NIY04_15675 IPR003607 HD/PDEase domain NIY04_15675 IPR004811 RelA/SpoT family NIY04_15675 IPR007685 RelA/SpoT NIY04_15675 IPR004095 TGS NIY04_15675 IPR012676 TGS-like NIY04_15675 IPR033655 RelA, TGS domain NIY04_15680 IPR012340 Nucleic acid-binding, OB-fold NIY04_15680 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase NIY04_15680 IPR002792 TRAM domain NIY04_15680 IPR010280 (Uracil-5)-methyltransferase family NIY04_15680 IPR001566 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD NIY04_15680 IPR030390 RNA methyltransferase TrmA, active site NIY04_15690 IPR005856 Cysteine synthase NIY04_15690 IPR005858 Cysteine synthase CysM NIY04_15690 IPR036052 Tryptophan synthase beta subunit-like PLP-dependent enzyme NIY04_15690 IPR001926 Pyridoxal-phosphate dependent enzyme NIY04_15690 IPR001216 Cysteine synthase/cystathionine beta-synthase, pyridoxal-phosphate attachment site NIY04_15695 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily NIY04_15695 IPR001789 Signal transduction response regulator, receiver domain NIY04_15695 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain NIY04_15695 IPR004358 Signal transduction histidine kinase-related protein, C-terminal NIY04_15695 IPR036641 HPT domain superfamily NIY04_15695 IPR019247 Histidine kinase BarA, N-terminal NIY04_15695 IPR003660 HAMP domain NIY04_15695 IPR003594 Histidine kinase/HSP90-like ATPase NIY04_15695 IPR036890 Histidine kinase/HSP90-like ATPase superfamily NIY04_15695 IPR005467 Histidine kinase domain NIY04_15695 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain NIY04_15695 IPR011006 CheY-like superfamily NIY04_15700 IPR001753 Enoyl-CoA hydratase/isomerase NIY04_15700 IPR018376 Enoyl-CoA hydratase/isomerase, conserved site NIY04_15700 IPR029045 ClpP/crotonase-like domain superfamily NIY04_15705 IPR036291 NAD(P)-binding domain superfamily NIY04_15705 IPR029154 3-hydroxyisobutyrate dehydrogenase, NAD-binding domain NIY04_15705 IPR015815 3-hydroxyisobutyrate dehydrogenase-related NIY04_15705 IPR013328 6-phosphogluconate dehydrogenase, domain 2 NIY04_15705 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily NIY04_15705 IPR002204 3-hydroxyisobutyrate dehydrogenase-related, conserved site NIY04_15705 IPR006115 6-phosphogluconate dehydrogenase, NADP-binding NIY04_15710 IPR026040 Hydroxypyruvate isomerase-like NIY04_15710 IPR036237 Xylose isomerase-like superfamily NIY04_15710 IPR013022 Xylose isomerase-like, TIM barrel domain NIY04_15715 IPR004394 Protein Iojap/ribosomal silencing factor RsfS NIY04_15720 IPR002347 Short-chain dehydrogenase/reductase SDR NIY04_15720 IPR036291 NAD(P)-binding domain superfamily NIY04_15720 IPR005979 Light-dependent protochlorophyllide reductase NIY04_15725 IPR012136 NADP transhydrogenase, beta subunit NIY04_15725 IPR034300 NADP transhydrogenase beta-like domain NIY04_15725 IPR029035 DHS-like NAD/FAD-binding domain superfamily NIY04_15730 IPR024605 NAD(P) transhydrogenase, alpha subunit, C-terminal NIY04_15735 IPR008143 Alanine dehydrogenase/pyridine nucleotide transhydrogenase, conserved site-2 NIY04_15735 IPR008142 Alanine dehydrogenase/NAD(P) transhydrogenase, conserved site-1 NIY04_15735 IPR007886 Alanine dehydrogenase/pyridine nucleotide transhydrogenase, N-terminal NIY04_15735 IPR007698 Alanine dehydrogenase/pyridine nucleotide transhydrogenase, NAD(H)-binding domain NIY04_15735 IPR036291 NAD(P)-binding domain superfamily NIY04_15740 IPR000620 EamA domain NIY04_15750 IPR020846 Major facilitator superfamily domain NIY04_15750 IPR036259 MFS transporter superfamily NIY04_15750 IPR011701 Major facilitator superfamily NIY04_15755 IPR018517 tRNA-dihydrouridine synthase, conserved site NIY04_15755 IPR001269 tRNA-dihydrouridine synthase NIY04_15755 IPR035587 DUS-like, FMN-binding domain NIY04_15755 IPR013785 Aldolase-type TIM barrel NIY04_15755 IPR004653 tRNA-dihydrouridine(20/20a) synthase NIY04_15765 IPR037411 HTH-type transcriptional regulator AlsR, PBP2 domain NIY04_15765 IPR005119 LysR, substrate-binding NIY04_15765 IPR000847 Transcription regulator HTH, LysR NIY04_15765 IPR036388 Winged helix-like DNA-binding domain superfamily NIY04_15765 IPR036390 Winged helix DNA-binding domain superfamily NIY04_15775 IPR000594 THIF-type NAD/FAD binding fold NIY04_15775 IPR035985 Ubiquitin-activating enzyme NIY04_15780 IPR036008 Aconitase, iron-sulfur domain NIY04_15780 IPR000573 Aconitase A/isopropylmalate dehydratase small subunit, swivel domain NIY04_15780 IPR018136 Aconitase family, 4Fe-4S cluster binding site NIY04_15780 IPR015931 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha, subdomain 1/3 NIY04_15780 IPR015928 Aconitase/3-isopropylmalate dehydratase, swivel NIY04_15780 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain NIY04_15780 IPR006249 Aconitase/Iron-responsive element-binding protein 2 NIY04_15785 IPR018228 Deoxyribonuclease, TatD-related, conserved site NIY04_15785 IPR015991 Uncharacterised hydrolase TatD-type NIY04_15785 IPR032466 Metal-dependent hydrolase NIY04_15785 IPR001130 TatD family NIY04_15800 IPR035647 EF-G domain III/V-like NIY04_15800 IPR004161 Translation elongation factor EFTu-like, domain 2 NIY04_15800 IPR031157 Tr-type G domain, conserved site NIY04_15800 IPR005225 Small GTP-binding protein domain NIY04_15800 IPR004548 Peptide chain release factor 3 NIY04_15800 IPR032090 Peptide chain release factor 3, C-terminal NIY04_15800 IPR038467 Peptide chain release factor 3, C-terminal domain superfamily NIY04_15800 IPR041732 Peptide chain release factor 3, GTP-binding domain NIY04_15800 IPR000795 Transcription factor, GTP-binding domain NIY04_15800 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIY04_15800 IPR009000 Translation protein, beta-barrel domain superfamily NIY04_15820 IPR006531 Gp5 N-terminal NIY04_15820 IPR028244 Putative type VI secretion system, Rhs element associated Vgr domain NIY04_15820 IPR017847 Type VI secretion system, RhsGE-associated Vgr family subset NIY04_15820 IPR006533 Type VI secretion system, RhsGE-associated Vgr protein NIY04_15820 IPR037026 Vgr protein, OB-fold domain superfamily NIY04_15820 IPR018769 Domain of unknown function DUF2345, Vgr C-terminal NIY04_15840 IPR001633 EAL domain NIY04_15840 IPR035919 EAL domain superfamily NIY04_15840 IPR000160 GGDEF domain NIY04_15840 IPR005330 MHYT domain NIY04_15840 IPR029787 Nucleotide cyclase NIY04_15845 IPR036291 NAD(P)-binding domain superfamily NIY04_15845 IPR014359 Ketol-acid reductoisomerase, prokaryotic NIY04_15845 IPR013116 Ketol-acid reductoisomerase, N-terminal NIY04_15845 IPR000506 Ketol-acid reductoisomerase, C-terminal NIY04_15845 IPR013023 Ketol-acid reductoisomerase NIY04_15845 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily NIY04_15850 IPR002912 ACT domain NIY04_15850 IPR019455 Acetolactate synthase, small subunit, C-terminal NIY04_15850 IPR027271 Acetolactate synthase/Transcription factor NikR, C-terminal NIY04_15850 IPR004789 Acetolactate synthase, small subunit NIY04_15850 IPR039557 AHAS, ACT domain NIY04_15855 IPR029061 Thiamin diphosphate-binding fold NIY04_15855 IPR029035 DHS-like NAD/FAD-binding domain superfamily NIY04_15855 IPR012000 Thiamine pyrophosphate enzyme, central domain NIY04_15855 IPR012001 Thiamine pyrophosphate enzyme, N-terminal TPP-binding domain NIY04_15855 IPR000399 TPP-binding enzyme, conserved site NIY04_15855 IPR011766 Thiamine pyrophosphate enzyme, C-terminal TPP-binding NIY04_15855 IPR039368 Acetolactate synthase large subunit, TPP binding domain NIY04_15855 IPR012846 Acetolactate synthase, large subunit, biosynthetic NIY04_15865 IPR025709 Leucyl-tRNA synthetase, editing domain NIY04_15865 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site NIY04_15865 IPR002300 Aminoacyl-tRNA synthetase, class Ia NIY04_15865 IPR002302 Leucine-tRNA ligase NIY04_15865 IPR013155 Methionyl/Valyl/Leucyl/Isoleucyl-tRNA synthetase, anticodon-binding NIY04_15865 IPR015413 Methionyl/Leucyl tRNA synthetase NIY04_15865 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold NIY04_15865 IPR009080 Aminoacyl-tRNA synthetase, class Ia, anticodon-binding NIY04_15865 IPR009008 Valyl/Leucyl/Isoleucyl-tRNA synthetase, editing domain NIY04_15880 IPR030190 Macrolide export protein MacA NIY04_15880 IPR006143 RND efflux pump, membrane fusion protein NIY04_15880 IPR032317 RND efflux pump, membrane fusion protein, barrel-sandwich domain NIY04_15885 IPR017871 ABC transporter, conserved site NIY04_15885 IPR003593 AAA+ ATPase domain NIY04_15885 IPR003439 ABC transporter-like NIY04_15885 IPR003838 ABC transporter permease protein domain NIY04_15885 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIY04_15885 IPR025857 MacB-like periplasmic core domain NIY04_15885 IPR017911 ABC transporter, macrolide export, ATP-binding domain NIY04_15890 IPR010131 RND efflux system, outer membrane lipoprotein, NodT NIY04_15890 IPR003423 Outer membrane efflux protein NIY04_15895 IPR036291 NAD(P)-binding domain superfamily NIY04_15895 IPR014358 Enoyl-[acyl-carrier-protein] reductase (NADH) NIY04_15895 IPR002347 Short-chain dehydrogenase/reductase SDR NIY04_15905 IPR012337 Ribonuclease H-like superfamily NIY04_15905 IPR022894 Oligoribonuclease NIY04_15905 IPR013520 Exonuclease, RNase T/DNA polymerase III NIY04_15905 IPR036397 Ribonuclease H superfamily NIY04_15910 IPR030378 Circularly permuted (CP)-type guanine nucleotide-binding (G) domain NIY04_15910 IPR012340 Nucleic acid-binding, OB-fold NIY04_15910 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIY04_15910 IPR004881 Ribosome biogenesis GTPase RsgA NIY04_15910 IPR010914 RsgA GTPase domain NIY04_15920 IPR011900 Glutaredoxin, GrxC NIY04_15920 IPR014025 Glutaredoxin subgroup NIY04_15920 IPR002109 Glutaredoxin NIY04_15920 IPR036249 Thioredoxin-like superfamily NIY04_15920 IPR011767 Glutaredoxin active site NIY04_15925 IPR035958 SecB-like superfamily NIY04_15925 IPR003708 Bacterial protein export chaperone SecB NIY04_15940 IPR000794 Beta-ketoacyl synthase NIY04_15940 IPR017568 3-oxoacyl-[acyl-carrier-protein] synthase 2 NIY04_15940 IPR018201 Beta-ketoacyl synthase, active site NIY04_15940 IPR014031 Beta-ketoacyl synthase, C-terminal NIY04_15940 IPR014030 Beta-ketoacyl synthase, N-terminal NIY04_15940 IPR020841 Polyketide synthase, beta-ketoacyl synthase domain NIY04_15940 IPR016039 Thiolase-like NIY04_15945 IPR011285 3-oxoacyl-(acyl-carrier-protein) reductase, putative NIY04_15945 IPR036291 NAD(P)-binding domain superfamily NIY04_15945 IPR002347 Short-chain dehydrogenase/reductase SDR NIY04_15955 IPR017568 3-oxoacyl-[acyl-carrier-protein] synthase 2 NIY04_15955 IPR018201 Beta-ketoacyl synthase, active site NIY04_15955 IPR014031 Beta-ketoacyl synthase, C-terminal NIY04_15955 IPR014030 Beta-ketoacyl synthase, N-terminal NIY04_15955 IPR020841 Polyketide synthase, beta-ketoacyl synthase domain NIY04_15955 IPR016039 Thiolase-like NIY04_15955 IPR000794 Beta-ketoacyl synthase NIY04_15965 IPR036188 FAD/NAD(P)-binding domain superfamily NIY04_15965 IPR006905 Flavin-dependent halogenase NIY04_15985 IPR001106 Aromatic amino acid lyase NIY04_15985 IPR005921 Histidine ammonia-lyase NIY04_15985 IPR008948 L-Aspartase-like NIY04_15985 IPR022313 Phenylalanine/histidine ammonia-lyases, active site NIY04_15985 IPR024083 Fumarase/histidase, N-terminal NIY04_15995 IPR039528 DPM1-like NIY04_15995 IPR001173 Glycosyltransferase 2-like NIY04_15995 IPR029044 Nucleotide-diphospho-sugar transferases NIY04_16000 IPR025110 AMP-binding enzyme, C-terminal domain NIY04_16000 IPR020845 AMP-binding, conserved site NIY04_16000 IPR000873 AMP-dependent synthetase/ligase NIY04_16000 IPR042099 AMP-dependent synthetase-like superfamily NIY04_16010 IPR036736 ACP-like superfamily NIY04_16010 IPR003231 Acyl carrier protein (ACP) NIY04_16010 IPR009081 Phosphopantetheine binding ACP domain NIY04_16015 IPR006162 Phosphopantetheine attachment site NIY04_16015 IPR009081 Phosphopantetheine binding ACP domain NIY04_16015 IPR036736 ACP-like superfamily NIY04_16015 IPR003231 Acyl carrier protein (ACP) NIY04_16030 IPR031166 EngA-type guanine nucleotide-binding (G) domain NIY04_16030 IPR016484 GTP-binding protein EngA NIY04_16030 IPR006073 GTP binding domain NIY04_16030 IPR032859 GTPase Der, C-terminal KH-domain-like NIY04_16030 IPR015946 K homology domain-like, alpha/beta NIY04_16030 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIY04_16030 IPR005225 Small GTP-binding protein domain NIY04_16035 IPR015943 WD40/YVTN repeat-like-containing domain superfamily NIY04_16035 IPR017687 Outer membrane protein assembly factor BamB NIY04_16035 IPR018391 Pyrrolo-quinoline quinone beta-propeller repeat NIY04_16035 IPR002372 Pyrrolo-quinoline quinone repeat NIY04_16035 IPR011047 Quinoprotein alcohol dehydrogenase-like superfamily NIY04_16045 IPR006195 Aminoacyl-tRNA synthetase, class II NIY04_16045 IPR036621 Anticodon-binding domain superfamily NIY04_16045 IPR015807 Histidine-tRNA ligase NIY04_16045 IPR041715 Class II Histidinyl-tRNA synthetase (HisRS)-like catalytic core domain NIY04_16045 IPR004516 Histidine-tRNA ligase/ATP phosphoribosyltransferase regulatory subunit NIY04_16045 IPR004154 Anticodon-binding NIY04_16050 IPR011005 Dihydropteroate synthase-like NIY04_16050 IPR016425 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase, bacterial NIY04_16050 IPR004588 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase, bacterial-type NIY04_16055 IPR001387 Cro/C1-type helix-turn-helix domain NIY04_16055 IPR025194 Domain of unknown function DUF4115 NIY04_16055 IPR010982 Lambda repressor-like, DNA-binding domain superfamily NIY04_16060 IPR019734 Tetratricopeptide repeat NIY04_16060 IPR011990 Tetratricopeptide-like helical domain superfamily NIY04_16060 IPR013360 Pilus biogenesis/stability type IV, PilW NIY04_16060 IPR013026 Tetratricopeptide repeat-containing domain NIY04_16065 IPR013785 Aldolase-type TIM barrel NIY04_16065 IPR040072 Methyltransferase (Class A) NIY04_16065 IPR027492 Dual-specificity RNA methyltransferase RlmN NIY04_16065 IPR004383 Ribosomal RNA large subunit methyltransferase RlmN/Cfr NIY04_16065 IPR007197 Radical SAM NIY04_16070 IPR034907 Nucleoside diphosphate kinase-like domain NIY04_16070 IPR036850 Nucleoside diphosphate kinase-like domain superfamily NIY04_16070 IPR001564 Nucleoside diphosphate kinase NIY04_16070 IPR023005 Nucleoside diphosphate kinase, active site NIY04_16075 IPR007479 ISC system FeS cluster assembly, IscX NIY04_16075 IPR036762 IscX-like superfamily NIY04_16080 IPR036938 Phosphatidic acid phosphatase type 2/haloperoxidase superfamily NIY04_16080 IPR000326 Phosphatidic acid phosphatase type 2/haloperoxidase NIY04_16085 IPR001296 Glycosyl transferase, family 1 NIY04_16085 IPR028098 Glycosyltransferase subfamily 4-like, N-terminal domain NIY04_16090 IPR040573 Tail specific protease, N-terminal domain NIY04_16090 IPR020992 Tail specific protease, C-terminal NIY04_16090 IPR005151 Tail specific protease NIY04_16090 IPR004447 C-terminal-processing peptidase S41A NIY04_16090 IPR001478 PDZ domain NIY04_16090 IPR029045 ClpP/crotonase-like domain superfamily NIY04_16090 IPR036034 PDZ superfamily NIY04_16095 IPR017853 Glycoside hydrolase superfamily NIY04_16095 IPR022956 Beta-hexosaminidase, bacterial NIY04_16095 IPR019800 Glycoside hydrolase, family 3, active site NIY04_16095 IPR001764 Glycoside hydrolase, family 3, N-terminal NIY04_16095 IPR036962 Glycoside hydrolase, family 3, N-terminal domain superfamily NIY04_16105 IPR023791 2-hydroxy-6-oxononadienedioate/2-hydroxy-6-oxononatrienedioate hydrolase NIY04_16105 IPR000639 Epoxide hydrolase-like NIY04_16105 IPR000073 Alpha/beta hydrolase fold-1 NIY04_16105 IPR029058 Alpha/Beta hydrolase fold NIY04_16110 IPR012134 Glutamate-5-semialdehyde dehydrogenase NIY04_16110 IPR000965 GPR domain NIY04_16110 IPR020593 Gamma-glutamyl phosphate reductase GPR, conserved site NIY04_16110 IPR016163 Aldehyde dehydrogenase, C-terminal NIY04_16110 IPR016162 Aldehyde dehydrogenase, N-terminal NIY04_16110 IPR016161 Aldehyde/histidinol dehydrogenase NIY04_16110 IPR015590 Aldehyde dehydrogenase domain NIY04_16115 IPR016161 Aldehyde/histidinol dehydrogenase NIY04_16115 IPR016163 Aldehyde dehydrogenase, C-terminal NIY04_16115 IPR016160 Aldehyde dehydrogenase, cysteine active site NIY04_16115 IPR016162 Aldehyde dehydrogenase, N-terminal NIY04_16115 IPR015590 Aldehyde dehydrogenase domain NIY04_16120 IPR006001 Carbohydrate kinase, thermoresistant glucokinase NIY04_16120 IPR031322 Shikimate kinase/gluconokinase NIY04_16120 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIY04_16125 IPR003474 Gluconate transporter NIY04_16130 IPR000887 KDPG/KHG aldolase NIY04_16130 IPR013785 Aldolase-type TIM barrel NIY04_16130 IPR031337 KDPG/KHG aldolase, active site 1 NIY04_16130 IPR031338 KDPG/KHG aldolase, active site 2 NIY04_16135 IPR042096 Dihydroxy-acid dehydratase, C-terminal NIY04_16135 IPR004786 6-phosphogluconate dehydratase NIY04_16135 IPR000581 Dihydroxy-acid/6-phosphogluconate dehydratase NIY04_16135 IPR037237 IlvD/EDD, N-terminal domain NIY04_16135 IPR020558 Dihydroxy-acid/6-phosphogluconate dehydratase, conserved site NIY04_16140 IPR004372 Acetate/propionate kinase NIY04_16140 IPR000890 Aliphatic acid kinase, short-chain NIY04_16140 IPR023865 Aliphatic acid kinase, short-chain, conserved site NIY04_16145 IPR028979 HPr(Ser) kinase/phosphorylase-like, N-terminal domain superfamily NIY04_16145 IPR002505 Phosphate acetyl/butaryl transferase NIY04_16145 IPR042113 Phosphate acetyltransferase, domain 1 NIY04_16145 IPR042112 Phosphate acetyltransferase, domain 2 NIY04_16145 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIY04_16145 IPR016475 Phosphate acetyltransferase, bacteria NIY04_16145 IPR010766 DRTGG NIY04_16145 IPR004614 Phosphate acetyltransferase NIY04_16150 IPR004646 Fe-S hydro-lyase, tartrate dehydratase alpha-type, catalytic domain NIY04_16150 IPR004647 Fe-S hydro-lyase, tartrate dehydratase beta-type, catalytic domain NIY04_16150 IPR036660 Fe-S hydro-lyase, tartrate dehydratase beta-type, catalytic domain superfamily NIY04_16150 IPR011167 Iron-dependent fumarate hydratase NIY04_16150 IPR020557 Fumarate lyase, conserved site NIY04_16165 IPR010603 Zinc finger, ClpX C4-type NIY04_16165 IPR038366 Zinc finger, ClpX C4-type superfamily NIY04_16165 IPR004487 Clp protease, ATP-binding subunit ClpX NIY04_16165 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIY04_16165 IPR003959 ATPase, AAA-type, core NIY04_16165 IPR003593 AAA+ ATPase domain NIY04_16165 IPR019489 Clp ATPase, C-terminal NIY04_16170 IPR018215 ClpP, Ser active site NIY04_16170 IPR001907 ATP-dependent Clp protease proteolytic subunit NIY04_16170 IPR029045 ClpP/crotonase-like domain superfamily NIY04_16170 IPR023562 Clp protease proteolytic subunit /Translocation-enhancing protein TepA NIY04_16170 IPR033135 ClpP, histidine active site NIY04_16175 IPR036611 Trigger factor ribosome-binding domain superfamily NIY04_16175 IPR008881 Trigger factor, ribosome-binding, bacterial NIY04_16175 IPR037041 Trigger factor, C-terminal domain superfamily NIY04_16175 IPR005215 Trigger factor NIY04_16175 IPR001179 FKBP-type peptidyl-prolyl cis-trans isomerase domain NIY04_16175 IPR027304 Trigger factor/SurA domain superfamily NIY04_16175 IPR008880 Trigger factor, C-terminal NIY04_16180 IPR039423 TonB-dependent receptor-like NIY04_16180 IPR037066 TonB-dependent receptor, plug domain superfamily NIY04_16180 IPR000531 TonB-dependent receptor-like, beta-barrel NIY04_16180 IPR030148 Catecholate siderophore receptor Fiu NIY04_16180 IPR036942 TonB-dependent receptor-like, beta-barrel domain superfamily NIY04_16180 IPR012910 TonB-dependent receptor, plug domain NIY04_16180 IPR010105 TonB-dependent siderophore receptor NIY04_16185 IPR041097 PKHD-type hydroxylase C-terminal domain NIY04_16185 IPR006620 Prolyl 4-hydroxylase, alpha subunit NIY04_16185 IPR005123 Oxoglutarate/iron-dependent dioxygenase NIY04_16185 IPR023550 PKHD-type hydroxylase NIY04_16190 IPR013709 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain NIY04_16190 IPR000891 Pyruvate carboxyltransferase NIY04_16190 IPR005668 2-isopropylmalate synthase NIY04_16190 IPR036230 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain superfamily NIY04_16190 IPR039371 LeuA, N-terminal catalytic TIM barrel domain NIY04_16190 IPR013785 Aldolase-type TIM barrel NIY04_16190 IPR002034 Alpha-isopropylmalate/homocitrate synthase, conserved site NIY04_16195 IPR000073 Alpha/beta hydrolase fold-1 NIY04_16195 IPR029058 Alpha/Beta hydrolase fold NIY04_16195 IPR008220 Homoserine/serine acetyltransferase MetX-like NIY04_16200 IPR029058 Alpha/Beta hydrolase fold NIY04_16200 IPR000073 Alpha/beta hydrolase fold-1 NIY04_16200 IPR008220 Homoserine/serine acetyltransferase MetX-like NIY04_16200 IPR010743 Methionine biosynthesis MetW NIY04_16200 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase NIY04_16210 IPR020922 dITP/XTP pyrophosphatase NIY04_16210 IPR002637 Ham1-like protein NIY04_16210 IPR029001 Inosine triphosphate pyrophosphatase-like NIY04_16220 IPR003369 Sec-independent protein translocase protein TatA/B/E NIY04_16220 IPR006312 Sec-independent protein translocase protein TatA/E NIY04_16225 IPR003369 Sec-independent protein translocase protein TatA/B/E NIY04_16225 IPR018448 Twin-arginine translocation protein TatB NIY04_16230 IPR019820 Sec-independent periplasmic protein translocase, conserved site NIY04_16230 IPR002033 Sec-independent periplasmic protein translocase TatC NIY04_16250 IPR001640 Phosphatidylglycerol--prolipoprotein diacylglyceryl transferase Lgt NIY04_16265 IPR000398 Thymidylate synthase NIY04_16265 IPR023451 Thymidylate synthase/dCMP hydroxymethylase domain NIY04_16265 IPR036926 Thymidylate synthase/dCMP hydroxymethylase superfamily NIY04_16265 IPR020940 Thymidylate synthase, active site NIY04_16270 IPR001796 Dihydrofolate reductase domain NIY04_16270 IPR017925 Dihydrofolate reductase conserved site NIY04_16270 IPR012259 Dihydrofolate reductase NIY04_16270 IPR024072 Dihydrofolate reductase-like domain superfamily NIY04_16280 IPR002569 Peptide methionine sulphoxide reductase MsrA NIY04_16280 IPR036509 Peptide methionine sulphoxide reductase MsrA superfamily NIY04_16290 IPR002898 MotA/TolQ/ExbB proton channel NIY04_16300 IPR002376 Formyl transferase, N-terminal NIY04_16300 IPR041729 Formyltetrahydrofolate deformylase, C-terminal hydrolase domain NIY04_16300 IPR036477 Formyl transferase, N-terminal domain superfamily NIY04_16300 IPR004810 Formyltetrahydrofolate deformylase NIY04_16300 IPR002912 ACT domain NIY04_16310 IPR029510 Aldehyde dehydrogenase, glutamic acid active site NIY04_16310 IPR012394 Aldehyde dehydrogenase NAD(P)-dependent NIY04_16310 IPR015590 Aldehyde dehydrogenase domain NIY04_16310 IPR016162 Aldehyde dehydrogenase, N-terminal NIY04_16310 IPR016163 Aldehyde dehydrogenase, C-terminal NIY04_16310 IPR016161 Aldehyde/histidinol dehydrogenase NIY04_16315 IPR034704 L28p-like NIY04_16315 IPR037147 Ribosomal protein L28/L24 superfamily NIY04_16315 IPR026569 Ribosomal protein L28/L24 NIY04_16315 IPR001383 Ribosomal protein L28 NIY04_16320 IPR001705 Ribosomal protein L33 NIY04_16320 IPR038584 Ribosomal protein L33 superfamily NIY04_16320 IPR018264 Ribosomal protein L33, conserved site NIY04_16320 IPR011332 Zinc-binding ribosomal protein NIY04_16325 IPR006153 Cation/H+ exchanger NIY04_16325 IPR004771 K+/H+ exchanger NIY04_16325 IPR038770 Sodium/solute symporter superfamily NIY04_16325 IPR036291 NAD(P)-binding domain superfamily NIY04_16325 IPR003148 Regulator of K+ conductance, N-terminal NIY04_16345 IPR012677 Nucleotide-binding alpha-beta plait domain superfamily NIY04_16345 IPR035979 RNA-binding domain superfamily NIY04_16345 IPR000504 RNA recognition motif domain NIY04_16350 IPR034739 UvrD/AddA helicase, N-terminal NIY04_16350 IPR014016 UvrD-like helicase, ATP-binding domain NIY04_16350 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIY04_16350 IPR013986 DExx box DNA helicase domain superfamily NIY04_16350 IPR014017 UvrD-like DNA helicase, C-terminal NIY04_16350 IPR005751 ATP-dependent DNA helicase PcrA NIY04_16350 IPR000212 DNA helicase, UvrD/REP type NIY04_16365 IPR003602 DNA topoisomerase, type IA, DNA-binding domain NIY04_16365 IPR006171 TOPRIM domain NIY04_16365 IPR013263 DNA topoisomerase I, zinc ribbon-like, bacterial-type NIY04_16365 IPR005733 DNA topoisomerase I, bacterial-type NIY04_16365 IPR013498 DNA topoisomerase, type IA, zn finger NIY04_16365 IPR023405 DNA topoisomerase, type IA, core domain NIY04_16365 IPR034149 DNA topoisomerase 1, TOPRIM domain NIY04_16365 IPR013825 DNA topoisomerase, type IA, central region, subdomain 2 NIY04_16365 IPR013826 DNA topoisomerase, type IA, central region, subdomain 3 NIY04_16365 IPR000380 DNA topoisomerase, type IA NIY04_16365 IPR003601 DNA topoisomerase, type IA, domain 2 NIY04_16365 IPR028612 DNA topoisomerase I, type IA NIY04_16365 IPR013497 DNA topoisomerase, type IA, central NIY04_16365 IPR023406 DNA topoisomerase, type IA, active site NIY04_16365 IPR013824 DNA topoisomerase, type IA, central region, subdomain 1 NIY04_16375 IPR036388 Winged helix-like DNA-binding domain superfamily NIY04_16375 IPR036390 Winged helix DNA-binding domain superfamily NIY04_16375 IPR002577 Helix-turn-helix, HxlR type NIY04_16380 IPR013149 Alcohol dehydrogenase, C-terminal NIY04_16380 IPR013154 Alcohol dehydrogenase, N-terminal NIY04_16380 IPR014182 Alcohol dehydrogenase, zinc-binding type 1 NIY04_16380 IPR011032 GroES-like superfamily NIY04_16380 IPR036291 NAD(P)-binding domain superfamily NIY04_16380 IPR020843 Polyketide synthase, enoylreductase domain NIY04_16380 IPR002364 Quinone oxidoreductase/zeta-crystallin, conserved site NIY04_16385 IPR007236 SlyX NIY04_16390 IPR003593 AAA+ ATPase domain NIY04_16390 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIY04_16390 IPR003439 ABC transporter-like NIY04_16390 IPR037118 Valyl-tRNA synthetase, tRNA-binding arm superfamily NIY04_16390 IPR032781 ABC-transporter extension domain NIY04_16390 IPR032524 ABC transporter Uup, C-terminal NIY04_16390 IPR017871 ABC transporter, conserved site NIY04_16395 IPR004778 Homoserine/Threonine efflux protein NIY04_16395 IPR001123 Amino acid exporter protein, LeuE-type NIY04_16400 IPR004960 Bacterial lipid A biosynthesis acyltransferase NIY04_16400 IPR011920 Lipid A biosynthesis lauroyl (or palmitoleoyl) acyltransferase NIY04_16410 IPR034703 Proton/glutamate-aspartate symporter GltP NIY04_16410 IPR033380 Glutamate-aspartate symport protein GltP/GltT NIY04_16410 IPR001991 Sodium:dicarboxylate symporter NIY04_16410 IPR018107 Sodium:dicarboxylate symporter, conserved site NIY04_16410 IPR036458 Sodium:dicarboxylate symporter superfamily NIY04_16420 IPR000319 Aspartate-semialdehyde dehydrogenase, conserved site NIY04_16420 IPR011534 Aspartate-semialdehyde dehydrogenase, gamma-type NIY04_16420 IPR012080 Aspartate-semialdehyde dehydrogenase NIY04_16420 IPR036291 NAD(P)-binding domain superfamily NIY04_16420 IPR012280 Semialdehyde dehydrogenase, dimerisation domain NIY04_16420 IPR000534 Semialdehyde dehydrogenase, NAD-binding NIY04_16440 IPR020103 Pseudouridine synthase, catalytic domain superfamily NIY04_16440 IPR001406 Pseudouridine synthase I, TruA NIY04_16440 IPR020097 Pseudouridine synthase I, TruA, alpha/beta domain NIY04_16440 IPR020095 Pseudouridine synthase I, TruA, C-terminal NIY04_16450 IPR012340 Nucleic acid-binding, OB-fold NIY04_16450 IPR006196 RNA-binding domain, S1, IF1 type NIY04_16450 IPR022967 RNA-binding domain, S1 NIY04_16450 IPR004368 Translation initiation factor IF-1 NIY04_16465 IPR019818 Isocitrate/isopropylmalate dehydrogenase, conserved site NIY04_16465 IPR024084 Isopropylmalate dehydrogenase-like domain NIY04_16465 IPR004429 Isopropylmalate dehydrogenase NIY04_16475 IPR033940 3-isopropylmalate dehydratase, swivel domain NIY04_16475 IPR000573 Aconitase A/isopropylmalate dehydratase small subunit, swivel domain NIY04_16475 IPR015928 Aconitase/3-isopropylmalate dehydratase, swivel NIY04_16475 IPR004431 3-isopropylmalate dehydratase, small subunit NIY04_16480 IPR004430 3-isopropylmalate dehydratase, large subunit NIY04_16480 IPR015931 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha, subdomain 1/3 NIY04_16480 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain NIY04_16480 IPR018136 Aconitase family, 4Fe-4S cluster binding site NIY04_16480 IPR036008 Aconitase, iron-sulfur domain NIY04_16480 IPR033941 3-Isopropylmalate dehydratase, catalytic domain NIY04_16490 IPR005119 LysR, substrate-binding NIY04_16490 IPR000847 Transcription regulator HTH, LysR NIY04_16490 IPR036388 Winged helix-like DNA-binding domain superfamily NIY04_16490 IPR036390 Winged helix DNA-binding domain superfamily NIY04_16500 IPR000086 NUDIX hydrolase domain NIY04_16500 IPR020084 NUDIX hydrolase, conserved site NIY04_16500 IPR022927 RNA pyrophosphohydrolase RppH NIY04_16500 IPR015797 NUDIX hydrolase-like domain superfamily NIY04_16500 IPR020476 NUDIX hydrolase NIY04_16505 IPR000121 PEP-utilising enzyme, C-terminal NIY04_16505 IPR040442 Pyruvate kinase-like domain superfamily NIY04_16505 IPR003018 GAF domain NIY04_16505 IPR029016 GAF-like domain superfamily NIY04_16505 IPR008279 PEP-utilising enzyme, mobile domain NIY04_16505 IPR018274 PEP-utilising enzyme, active site NIY04_16505 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain superfamily NIY04_16505 IPR023151 PEP-utilising enzyme, conserved site NIY04_16505 IPR036637 Phosphohistidine domain superfamily NIY04_16505 IPR006318 Phosphotransferase system, enzyme I-like NIY04_16505 IPR008731 Phosphotransferase system, enzyme I N-terminal NIY04_16505 IPR036618 PtsI, HPr-binding domain superfamily NIY04_16510 IPR010255 Haem peroxidase superfamily NIY04_16510 IPR019794 Peroxidase, active site NIY04_16510 IPR000763 Catalase-peroxidase haem NIY04_16510 IPR002016 Haem peroxidase NIY04_16515 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like NIY04_16515 IPR001279 Metallo-beta-lactamase NIY04_16515 IPR024884 N-acyl-phosphatidylethanolamine-hydrolysing phospholipase D NIY04_16520 IPR005119 LysR, substrate-binding NIY04_16520 IPR000847 Transcription regulator HTH, LysR NIY04_16520 IPR036388 Winged helix-like DNA-binding domain superfamily NIY04_16520 IPR036390 Winged helix DNA-binding domain superfamily NIY04_16530 IPR036249 Thioredoxin-like superfamily NIY04_16530 IPR004045 Glutathione S-transferase, N-terminal NIY04_16530 IPR036282 Glutathione S-transferase, C-terminal domain superfamily NIY04_16530 IPR010987 Glutathione S-transferase, C-terminal-like NIY04_16530 IPR040079 Glutathione Transferase family NIY04_16535 IPR001034 DeoR-type HTH domain NIY04_16535 IPR013196 Helix-turn-helix, type 11 NIY04_16535 IPR028349 Protein PafC NIY04_16535 IPR036388 Winged helix-like DNA-binding domain superfamily NIY04_16535 IPR036390 Winged helix DNA-binding domain superfamily NIY04_16535 IPR026881 WYL domain NIY04_16540 IPR036412 HAD-like superfamily NIY04_16540 IPR041492 Haloacid dehalogenase-like hydrolase NIY04_16540 IPR023214 HAD superfamily NIY04_16540 IPR023198 Phosphoglycolate phosphatase-like, domain 2 NIY04_16540 IPR023733 Pyrophosphatase PpaX NIY04_16540 IPR006439 HAD hydrolase, subfamily IA NIY04_16545 IPR020103 Pseudouridine synthase, catalytic domain superfamily NIY04_16545 IPR006225 Pseudouridine synthase, RluC/RluD NIY04_16545 IPR006224 Pseudouridine synthase, RluC/RluD, conserved site NIY04_16545 IPR006145 Pseudouridine synthase, RsuA/RluA NIY04_16545 IPR002942 RNA-binding S4 domain NIY04_16545 IPR036986 RNA-binding S4 domain superfamily NIY04_16550 IPR004659 Ribonuclease E/G NIY04_16550 IPR022967 RNA-binding domain, S1 NIY04_16550 IPR003029 S1 domain NIY04_16550 IPR012340 Nucleic acid-binding, OB-fold NIY04_16550 IPR028878 Ribonuclease E NIY04_16550 IPR019307 RNA-binding protein AU-1/Ribonuclease E/G NIY04_16550 IPR021968 Polyribonucleotide phosphorylase C-terminal NIY04_16555 IPR025110 AMP-binding enzyme, C-terminal domain NIY04_16555 IPR020845 AMP-binding, conserved site NIY04_16555 IPR030310 Long-chain-fatty-acid--CoA ligase FadD17 NIY04_16555 IPR042099 AMP-dependent synthetase-like superfamily NIY04_16555 IPR000873 AMP-dependent synthetase/ligase NIY04_16570 IPR005119 LysR, substrate-binding NIY04_16570 IPR000847 Transcription regulator HTH, LysR NIY04_16570 IPR036390 Winged helix DNA-binding domain superfamily NIY04_16570 IPR036388 Winged helix-like DNA-binding domain superfamily NIY04_16575 IPR002347 Short-chain dehydrogenase/reductase SDR NIY04_16575 IPR020904 Short-chain dehydrogenase/reductase, conserved site NIY04_16575 IPR036291 NAD(P)-binding domain superfamily NIY04_16575 IPR011284 3-oxoacyl-(acyl-carrier-protein) reductase NIY04_16580 IPR034505 Anaerobic coproporphyrinogen-III oxidase NIY04_16580 IPR023404 Radical SAM, alpha/beta horseshoe NIY04_16580 IPR007197 Radical SAM NIY04_16580 IPR006638 Elp3/MiaB/NifB NIY04_16580 IPR010723 HemN, C-terminal NIY04_16580 IPR004559 Heme chaperone HemW-like NIY04_16590 IPR002528 Multi antimicrobial extrusion protein NIY04_16595 IPR037069 Acyl-CoA dehydrogenase/oxidase, N-terminal domain superfamily NIY04_16595 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal NIY04_16595 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily NIY04_16595 IPR006091 Acyl-CoA oxidase/dehydrogenase, central domain NIY04_16595 IPR013107 Acyl-CoA dehydrogenase, C-terminal domain NIY04_16595 IPR036250 Acyl-CoA dehydrogenase-like, C-terminal NIY04_16600 IPR037069 Acyl-CoA dehydrogenase/oxidase, N-terminal domain superfamily NIY04_16600 IPR013107 Acyl-CoA dehydrogenase, C-terminal domain NIY04_16600 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily NIY04_16600 IPR036250 Acyl-CoA dehydrogenase-like, C-terminal NIY04_16600 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal NIY04_16605 IPR011009 Protein kinase-like domain superfamily NIY04_16605 IPR000719 Protein kinase domain NIY04_16605 IPR004147 UbiB domain NIY04_16610 IPR027493 Ribosomal protein L31 type B NIY04_16610 IPR042105 Ribosomal protein L31 superfamily NIY04_16610 IPR002150 Ribosomal protein L31 NIY04_16610 IPR034704 L28p-like NIY04_16620 IPR003691 Putative fluoride ion transporter CrcB NIY04_16630 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site NIY04_16630 IPR028261 Dihydroprymidine dehydrogenase domain II NIY04_16630 IPR036188 FAD/NAD(P)-binding domain superfamily NIY04_16630 IPR023753 FAD/NAD(P)-binding domain NIY04_16630 IPR006006 Glutamate synthase, NADH/NADPH, small subunit 2 NIY04_16630 IPR009051 Alpha-helical ferredoxin NIY04_16630 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain NIY04_16640 IPR013088 Zinc finger, NHR/GATA-type NIY04_16640 IPR005584 DNA gyrase inhibitor YacG NIY04_16645 IPR001279 Metallo-beta-lactamase NIY04_16645 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like NIY04_16650 IPR001015 Ferrochelatase NIY04_16650 IPR019772 Ferrochelatase, active site NIY04_16650 IPR033644 Ferrochelatase, C-terminal NIY04_16650 IPR033659 Ferrochelatase, N-terminal NIY04_16660 IPR004391 Glutamate racemase NIY04_16660 IPR033134 Asp/Glu racemase, active site 2 NIY04_16660 IPR001920 Asp/Glu racemase NIY04_16660 IPR015942 Asp/Glu/hydantoin racemase NIY04_16660 IPR018187 Asp/Glu racemase, active site 1 NIY04_16670 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain NIY04_16670 IPR040156 Electron transfer flavoprotein-ubiquinone oxidoreductase NIY04_16670 IPR036188 FAD/NAD(P)-binding domain superfamily NIY04_16680 IPR022931 Sulfur carrier protein TusA NIY04_16680 IPR001455 TusA-like domain NIY04_16680 IPR036868 TusA-like domain superfamily NIY04_16685 IPR005170 Transporter-associated domain NIY04_16685 IPR036318 FAD-binding, type PCMH-like superfamily NIY04_16685 IPR016169 FAD-binding, type PCMH, subdomain 2 NIY04_16685 IPR000644 CBS domain NIY04_16690 IPR004563 Apolipoprotein N-acyltransferase NIY04_16690 IPR003010 Carbon-nitrogen hydrolase NIY04_16690 IPR036526 Carbon-nitrogen hydrolase superfamily NIY04_16695 IPR008231 Probable chaperone CsaA NIY04_16695 IPR012340 Nucleic acid-binding, OB-fold NIY04_16695 IPR002547 tRNA-binding domain NIY04_16705 IPR010054 General secretion pathway protein G NIY04_16705 IPR012902 Prokaryotic N-terminal methylation site NIY04_16705 IPR013545 Type II secretion system protein G NIY04_16705 IPR000983 Bacterial general secretion pathway protein G-type pilin NIY04_16710 IPR003004 GspF/PilC family NIY04_16710 IPR011850 General secretion pathway protein F NIY04_16710 IPR001992 Type II secretion system conserved site NIY04_16710 IPR018076 Type II secretion system F domain NIY04_16710 IPR042094 Type II secretion system F domain superfamily NIY04_16715 IPR040498 PriA DNA helicase, Cys-rich region (CRR) domain NIY04_16715 IPR042115 Primosomal protein N', 3' DNA-binding domain superfamily NIY04_16715 IPR041222 Primosomal protein N', 3' DNA-binding domain NIY04_16715 IPR041236 Primosomal protein N, C-terminal domain NIY04_16715 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIY04_16715 IPR014001 Helicase superfamily 1/2, ATP-binding domain NIY04_16715 IPR011545 DEAD/DEAH box helicase domain NIY04_16715 IPR005259 Primosomal protein N' NIY04_16715 IPR001650 Helicase, C-terminal NIY04_16720 IPR006153 Cation/H+ exchanger NIY04_16720 IPR004771 K+/H+ exchanger NIY04_16720 IPR020884 Glutathione-regulated potassium-efflux system protein KefB NIY04_16720 IPR038770 Sodium/solute symporter superfamily NIY04_16720 IPR036291 NAD(P)-binding domain superfamily NIY04_16720 IPR003148 Regulator of K+ conductance, N-terminal NIY04_16725 IPR016154 Heat shock protein Hsp33, C-terminal NIY04_16725 IPR016153 Heat shock protein Hsp33, N-terminal NIY04_16725 IPR023212 Heat shock protein Hsp33, helix hairpin bin domain superfamily NIY04_16725 IPR000397 Heat shock protein Hsp33 NIY04_16735 IPR036869 Chaperone J-domain superfamily NIY04_16735 IPR023859 DNA-binding protein, curved-DNA NIY04_16735 IPR002939 Chaperone DnaJ, C-terminal NIY04_16735 IPR001623 DnaJ domain NIY04_16735 IPR018253 DnaJ domain, conserved site NIY04_16735 IPR008971 HSP40/DnaJ peptide-binding NIY04_16740 IPR022835 Chaperone modulatory protein CbpM NIY04_16745 IPR004488 Magnesium/cobalt transport protein CorA NIY04_16745 IPR002523 Mg2+ transporter protein, CorA-like/Zinc transport protein ZntB NIY04_16750 IPR015848 Polyribonucleotide nucleotidyltransferase, RNA-binding domain NIY04_16750 IPR036456 Polyribonucleotide nucleotidyltransferase, RNA-binding domain superfamily NIY04_16750 IPR020568 Ribosomal protein S5 domain 2-type fold NIY04_16750 IPR027408 PNPase/RNase PH domain superfamily NIY04_16750 IPR022967 RNA-binding domain, S1 NIY04_16750 IPR003029 S1 domain NIY04_16750 IPR012162 Polyribonucleotide nucleotidyltransferase NIY04_16750 IPR012340 Nucleic acid-binding, OB-fold NIY04_16750 IPR036612 K Homology domain, type 1 superfamily NIY04_16750 IPR004088 K Homology domain, type 1 NIY04_16750 IPR004087 K Homology domain NIY04_16750 IPR036345 Exoribonuclease, PH domain 2 superfamily NIY04_16750 IPR015847 Exoribonuclease, phosphorolytic domain 2 NIY04_16750 IPR001247 Exoribonuclease, phosphorolytic domain 1 NIY04_16755 IPR009068 S15/NS1, RNA-binding NIY04_16755 IPR005290 Ribosomal protein S15, bacterial-type NIY04_16755 IPR000589 Ribosomal protein S15 NIY04_16760 IPR001466 Beta-lactamase-related NIY04_16760 IPR012338 Beta-lactamase/transpeptidase-like NIY04_16765 IPR003593 AAA+ ATPase domain NIY04_16765 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIY04_16765 IPR006344 RecBCD enzyme subunit RecD NIY04_16765 IPR041851 RecBCD enzyme subunit RecD, N-terminal domain NIY04_16765 IPR027785 UvrD-like helicase C-terminal domain NIY04_16770 IPR038726 PD-(D/E)XK endonuclease-like domain, AddAB-type NIY04_16770 IPR004586 RecBCD enzyme subunit RecB NIY04_16770 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIY04_16770 IPR014016 UvrD-like helicase, ATP-binding domain NIY04_16770 IPR000212 DNA helicase, UvrD/REP type NIY04_16770 IPR014017 UvrD-like DNA helicase, C-terminal NIY04_16770 IPR011335 Restriction endonuclease type II-like NIY04_16770 IPR011604 Exonuclease, phage-type/RecB, C-terminal NIY04_16770 IPR034739 UvrD/AddA helicase, N-terminal NIY04_16775 IPR013986 DExx box DNA helicase domain superfamily NIY04_16775 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIY04_16775 IPR006697 RecBCD enzyme subunit RecC NIY04_16775 IPR041500 RecC, C-terminal NIY04_16775 IPR011335 Restriction endonuclease type II-like NIY04_16785 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIY04_16785 IPR022488 Polyphosphate kinase-2-related NIY04_16795 IPR023576 UbiE/COQ5 methyltransferase, conserved site NIY04_16795 IPR004033 UbiE/COQ5 methyltransferase NIY04_16795 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase NIY04_16805 IPR011009 Protein kinase-like domain superfamily NIY04_16805 IPR010232 Probable protein kinase UbiB NIY04_16805 IPR004147 UbiB domain NIY04_16810 IPR002938 FAD-binding domain NIY04_16810 IPR036188 FAD/NAD(P)-binding domain superfamily NIY04_16815 IPR026660 Phosphoribosyl-AMP cyclohydrolase NIY04_16815 IPR038019 Phosphoribosyl-AMP cyclohydrolase domain superfamily NIY04_16815 IPR002496 Phosphoribosyl-AMP cyclohydrolase domain NIY04_16830 IPR005663 Monovalent cation proton antiporter subunit A NIY04_16830 IPR001516 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminal NIY04_16830 IPR001750 NADH:quinone oxidoreductase/Mrp antiporter, membrane subunit NIY04_16830 IPR005281 Monovalent cation:proton antiporter, subunit B NIY04_16830 IPR025383 Domain of unknown function DUF4040 NIY04_16830 IPR007182 Na+/H+ antiporter MnhB subunit-related protein NIY04_16835 IPR006673 Mnh complex subunit C1 NIY04_16835 IPR039428 NADH-ubiquinone oxidoreductase chain 4L/Mnh complex subunit C1-like NIY04_16840 IPR004775 Na(+)/H(+) antiporter subunit D1 NIY04_16840 IPR001750 NADH:quinone oxidoreductase/Mrp antiporter, membrane subunit NIY04_16845 IPR002758 Na+/H+ antiporter subunit E NIY04_16850 IPR007208 Na(+)/H(+) antiporter subunit F-like NIY04_16855 IPR005133 Na+/H+ antiporter subunit G NIY04_16860 IPR015946 K homology domain-like, alpha/beta NIY04_16860 IPR000238 Ribosome-binding factor A NIY04_16860 IPR023799 Ribosome-binding factor A domain superfamily NIY04_16865 IPR036925 Translation initiation factor IF-2, domain 3 superfamily NIY04_16865 IPR005225 Small GTP-binding protein domain NIY04_16865 IPR000795 Transcription factor, GTP-binding domain NIY04_16865 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIY04_16865 IPR023115 Translation initiation factor IF- 2, domain 3 NIY04_16865 IPR013575 Initiation factor 2 associated domain, bacterial NIY04_16865 IPR009061 Putative DNA-binding domain superfamily NIY04_16865 IPR009000 Translation protein, beta-barrel domain superfamily NIY04_16865 IPR006847 Translation initiation factor IF-2, N-terminal NIY04_16865 IPR000178 Translation initiation factor aIF-2, bacterial-like NIY04_16865 IPR015760 Translation initiation factor IF- 2 NIY04_16870 IPR013735 Transcription factor NusA, N-terminal NIY04_16870 IPR010995 DNA repair Rad51/transcription factor NusA, alpha-helical NIY04_16870 IPR015946 K homology domain-like, alpha/beta NIY04_16870 IPR010213 Transcription termination factor NusA NIY04_16870 IPR010214 Transcription termination factor NusA, C-terminal duplication NIY04_16870 IPR025249 KH domain, NusA-like NIY04_16870 IPR003029 S1 domain NIY04_16870 IPR022967 RNA-binding domain, S1 NIY04_16870 IPR036555 NusA, N-terminal domain superfamily NIY04_16870 IPR030842 Transcription termination/antitermination protein NusA, bacterial NIY04_16870 IPR012340 Nucleic acid-binding, OB-fold NIY04_16870 IPR009019 K homology domain superfamily, prokaryotic type NIY04_16875 IPR035956 RimP, N-terminal domain superfamily NIY04_16875 IPR028989 Ribosome maturation factor RimP, N-terminal NIY04_16875 IPR003728 Ribosome maturation factor RimP NIY04_16875 IPR028998 Ribosome maturation factor RimP, C-terminal NIY04_16875 IPR036847 Ribosome maturation factor RimP, C-terminal domain superfamily NIY04_16895 IPR004692 Preprotein translocase SecG subunit NIY04_16900 IPR022896 Triosephosphate isomerase, bacterial/eukaryotic NIY04_16900 IPR000652 Triosephosphate isomerase NIY04_16900 IPR020861 Triosephosphate isomerase, active site NIY04_16900 IPR035990 Triosephosphate isomerase superfamily NIY04_16900 IPR013785 Aldolase-type TIM barrel NIY04_16905 IPR013374 ATPase, type IV, pilus assembly, PilB NIY04_16905 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIY04_16905 IPR001482 Type II/IV secretion system protein NIY04_16905 IPR037257 General secretory system II, protein E, N-terminal superfamily NIY04_16905 IPR007831 General secretory system II, protein E, N-terminal NIY04_16905 IPR042181 Type II secretion system, protein E, N-terminal NIY04_16910 IPR003004 GspF/PilC family NIY04_16910 IPR001992 Type II secretion system conserved site NIY04_16910 IPR018076 Type II secretion system F domain NIY04_16910 IPR042094 Type II secretion system F domain superfamily NIY04_16920 IPR014032 Peptidase A24A, prepilin type IV, bacterial NIY04_16920 IPR010627 Peptidase A24A, N-terminal NIY04_16920 IPR000045 Prepilin type IV endopeptidase, peptidase domain NIY04_16925 IPR001977 Dephospho-CoA kinase NIY04_16925 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIY04_16935 IPR029028 Alpha/beta knot methyltransferases NIY04_16935 IPR029064 50S ribosomal protein L30e-like NIY04_16935 IPR004441 RNA methyltransferase TrmH family NIY04_16935 IPR001537 tRNA/rRNA methyltransferase, SpoU type NIY04_16935 IPR013123 RNA 2-O ribose methyltransferase, substrate binding NIY04_16935 IPR024915 23S rRNA (guanosine-2-O-)-methyltransferase RlmB NIY04_16935 IPR029026 tRNA (guanine-N1-)-methyltransferase, N-terminal NIY04_16940 IPR009664 Pyrimidine/purine nucleoside phosphorylase NIY04_16940 IPR014710 RmlC-like jelly roll fold NIY04_16940 IPR011051 RmlC-like cupin domain superfamily NIY04_16950 IPR004604 DNA recombination/repair protein RecN NIY04_16950 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIY04_16950 IPR003395 RecF/RecN/SMC, N-terminal NIY04_16955 IPR003774 Protein of unknown function UPF0301 NIY04_16960 IPR006641 YqgF/RNase H-like domain NIY04_16960 IPR037027 YqgF/RNase H-like domain superfamily NIY04_16960 IPR005227 Putative pre-16S rRNA nuclease NIY04_16960 IPR012337 Ribonuclease H-like superfamily NIY04_16965 IPR006143 RND efflux pump, membrane fusion protein NIY04_16965 IPR022871 Para-hydroxybenzoic acid efflux pump, subunit AaeA NIY04_16965 IPR039562 Membrane fusion protein, biotin-lipoyl like domain NIY04_16990 IPR035451 Ada-like domain superfamily NIY04_16990 IPR036388 Winged helix-like DNA-binding domain superfamily NIY04_16990 IPR036631 Methylated DNA-protein cysteine methyltransferase domain superfamily NIY04_16990 IPR036217 Methylated DNA-protein cysteine methyltransferase, DNA binding domain NIY04_16990 IPR014048 Methylated-DNA-[protein]-cysteine S-methyltransferase, DNA binding NIY04_16990 IPR008332 Methylguanine DNA methyltransferase, ribonuclease-like domain NIY04_16990 IPR018062 HTH domain AraC-type, conserved site NIY04_16990 IPR018060 DNA binding HTH domain, AraC-type NIY04_16990 IPR009057 Homeobox-like domain superfamily NIY04_16990 IPR016221 Bifunctional regulatory protein Ada NIY04_16990 IPR004026 Ada DNA repair, metal-binding NIY04_16990 IPR001497 Methylated-DNA-[protein]-cysteine S-methyltransferase, active site NIY04_16995 IPR000462 CDP-alcohol phosphatidyltransferase NIY04_16995 IPR023762 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase, bacterial NIY04_16995 IPR004570 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase NIY04_17005 IPR038476 UvrC homology region 2 superfamily NIY04_17005 IPR001162 UvrC family homology region NIY04_17005 IPR036876 UVR domain superfamily NIY04_17005 IPR004791 UvrABC system, subunit C NIY04_17005 IPR003583 Helix-hairpin-helix DNA-binding motif, class 1 NIY04_17005 IPR001943 UVR domain NIY04_17005 IPR010994 RuvA domain 2-like NIY04_17005 IPR000305 GIY-YIG endonuclease NIY04_17005 IPR035901 GIY-YIG endonuclease superfamily NIY04_17020 IPR006180 3-hydroxyacyl-CoA dehydrogenase, conserved site NIY04_17020 IPR036291 NAD(P)-binding domain superfamily NIY04_17020 IPR001753 Enoyl-CoA hydratase/isomerase NIY04_17020 IPR012799 Fatty oxidation complex, alpha subunit FadB NIY04_17020 IPR029045 ClpP/crotonase-like domain superfamily NIY04_17020 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily NIY04_17020 IPR006108 3-hydroxyacyl-CoA dehydrogenase, C-terminal NIY04_17020 IPR006176 3-hydroxyacyl-CoA dehydrogenase, NAD binding NIY04_17020 IPR018376 Enoyl-CoA hydratase/isomerase, conserved site NIY04_17025 IPR002155 Thiolase NIY04_17025 IPR016039 Thiolase-like NIY04_17025 IPR020615 Thiolase, acyl-enzyme intermediate active site NIY04_17025 IPR020610 Thiolase, active site NIY04_17025 IPR020617 Thiolase, C-terminal NIY04_17025 IPR020613 Thiolase, conserved site NIY04_17025 IPR020616 Thiolase, N-terminal NIY04_17025 IPR012805 Acetyl-CoA C-acyltransferase FadA NIY04_17050 IPR000551 MerR-type HTH domain NIY04_17050 IPR009061 Putative DNA-binding domain superfamily NIY04_17050 IPR011789 Cu(I)-responsive transcriptional regulator NIY04_17050 IPR015358 Transcription regulator MerR, DNA binding NIY04_17060 IPR036249 Thioredoxin-like superfamily NIY04_17060 IPR001853 DSBA-like thioredoxin domain NIY04_17075 IPR020568 Ribosomal protein S5 domain 2-type fold NIY04_17075 IPR003594 Histidine kinase/HSP90-like ATPase NIY04_17075 IPR036890 Histidine kinase/HSP90-like ATPase superfamily NIY04_17075 IPR037196 HSP90, C-terminal domain NIY04_17075 IPR001404 Heat shock protein Hsp90 family NIY04_17075 IPR020575 Heat shock protein Hsp90, N-terminal NIY04_17090 IPR018461 Na+/H+ antiporter, NhaC-like, C-terminal NIY04_17090 IPR032813 Putative Na+/H+ antiporter, N-terminal NIY04_17095 IPR029058 Alpha/Beta hydrolase fold NIY04_17095 IPR000073 Alpha/beta hydrolase fold-1 NIY04_17095 IPR010076 Pimeloyl-[acyl-carrier protein] methyl ester esterase NIY04_17115 IPR007083 RNA polymerase Rpb1, domain 4 NIY04_17115 IPR038120 RNA polymerase Rpb1, funnel domain superfamily NIY04_17115 IPR007081 RNA polymerase Rpb1, domain 5 NIY04_17115 IPR042102 RNA polymerase Rpb1, domain 3 superfamily NIY04_17115 IPR007066 RNA polymerase Rpb1, domain 3 NIY04_17115 IPR007080 RNA polymerase Rpb1, domain 1 NIY04_17115 IPR000722 RNA polymerase, alpha subunit NIY04_17115 IPR006592 RNA polymerase, N-terminal NIY04_17115 IPR012754 DNA-directed RNA polymerase, subunit beta-prime NIY04_17120 IPR007645 RNA polymerase Rpb2, domain 3 NIY04_17120 IPR037034 RNA polymerase Rpb2, domain 2 superfamily NIY04_17120 IPR007642 RNA polymerase Rpb2, domain 2 NIY04_17120 IPR007644 RNA polymerase, beta subunit, protrusion NIY04_17120 IPR007121 RNA polymerase, beta subunit, conserved site NIY04_17120 IPR010243 DNA-directed RNA polymerase beta subunit, bacterial-type NIY04_17120 IPR037033 DNA-directed RNA polymerase, subunit 2, hybrid-binding domain superfamily NIY04_17120 IPR007120 DNA-directed RNA polymerase, subunit 2, hybrid-binding domain NIY04_17120 IPR015712 DNA-directed RNA polymerase, subunit 2 NIY04_17120 IPR042107 DNA-directed RNA polymerase, beta subunit, external 1 domain superfamily NIY04_17120 IPR014724 RNA polymerase Rpb2, OB-fold NIY04_17120 IPR019462 DNA-directed RNA polymerase, beta subunit, external 1 domain NIY04_17120 IPR007641 RNA polymerase Rpb2, domain 7 NIY04_17125 IPR036235 Ribosomal protein L7/L12, oligomerisation domain superfamily NIY04_17125 IPR008932 Ribosomal protein L7/L12, oligomerisation NIY04_17125 IPR013823 Ribosomal protein L7/L12, C-terminal NIY04_17125 IPR014719 Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-like NIY04_17125 IPR000206 Ribosomal protein L7/L12 NIY04_17130 IPR001790 Ribosomal protein L10P NIY04_17130 IPR022973 Ribosomal protein L10 NIY04_17130 IPR002363 Ribosomal protein L10, eubacterial, conserved site NIY04_17135 IPR005878 Ribosomal protein L1, bacterial-type NIY04_17135 IPR002143 Ribosomal protein L1 NIY04_17135 IPR023674 Ribosomal protein L1-like NIY04_17135 IPR016095 Ribosomal protein L1, 3-layer alpha/beta-sandwich NIY04_17135 IPR023673 Ribosomal protein L1, conserved site NIY04_17135 IPR028364 Ribosomal protein L1/ribosomal biogenesis protein NIY04_17140 IPR036769 Ribosomal protein L11, C-terminal domain superfamily NIY04_17140 IPR000911 Ribosomal protein L11/L12 NIY04_17140 IPR036796 Ribosomal protein L11/L12, N-terminal domain superfamily NIY04_17140 IPR006519 Ribosomal protein L11, bacterial-type NIY04_17140 IPR020783 Ribosomal protein L11, C-terminal NIY04_17140 IPR020785 Ribosomal protein L11, conserved site NIY04_17140 IPR020784 Ribosomal protein L11, N-terminal NIY04_17145 IPR008991 Translation protein SH3-like domain superfamily NIY04_17145 IPR015869 Transcription antitermination protein, NusG, bacteria, conserved site NIY04_17145 IPR001062 Transcription antitermination protein, NusG NIY04_17145 IPR014722 Ribosomal protein L2, domain 2 NIY04_17145 IPR036735 NusG, N-terminal domain superfamily NIY04_17145 IPR006645 NusG, N-terminal NIY04_17145 IPR005824 KOW NIY04_17150 IPR038379 SecE superfamily NIY04_17150 IPR001901 Protein translocase complex, SecE/Sec61-gamma subunit NIY04_17150 IPR005807 SecE subunit of protein translocation complex, bacterial-like NIY04_17160 IPR004160 Translation elongation factor EFTu/EF1A, C-terminal NIY04_17160 IPR005225 Small GTP-binding protein domain NIY04_17160 IPR000795 Transcription factor, GTP-binding domain NIY04_17160 IPR009000 Translation protein, beta-barrel domain superfamily NIY04_17160 IPR041709 Elongation factor Tu (EF-Tu), GTP-binding domain NIY04_17160 IPR009001 Translation elongation factor EF1A/initiation factor IF2gamma, C-terminal NIY04_17160 IPR004161 Translation elongation factor EFTu-like, domain 2 NIY04_17160 IPR031157 Tr-type G domain, conserved site NIY04_17160 IPR033720 Elongation factor Tu, domain 2 NIY04_17160 IPR004541 Translation elongation factor EFTu/EF1A, bacterial/organelle NIY04_17160 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIY04_17185 IPR005801 ADC synthase NIY04_17185 IPR006805 Anthranilate synthase component I, N-terminal NIY04_17185 IPR019999 Anthranilate synthase component I-like NIY04_17185 IPR005256 Anthranilate synthase component I, PabB-like NIY04_17185 IPR015890 Chorismate-utilising enzyme, C-terminal NIY04_17190 IPR041492 Haloacid dehalogenase-like hydrolase NIY04_17190 IPR023214 HAD superfamily NIY04_17190 IPR023198 Phosphoglycolate phosphatase-like, domain 2 NIY04_17190 IPR006346 2-phosphoglycolate phosphatase-like, prokaryotic NIY04_17190 IPR037512 Phosphoglycolate phosphatase, prokaryotic NIY04_17190 IPR036412 HAD-like superfamily NIY04_17190 IPR006439 HAD hydrolase, subfamily IA NIY04_17195 IPR042287 FhaA, N-terminal NIY04_17195 IPR008984 SMAD/FHA domain superfamily NIY04_17195 IPR000253 Forkhead-associated (FHA) domain NIY04_17195 IPR022128 Domain of unknown function DUF3662 NIY04_17200 IPR038591 NolW-like superfamily NIY04_17200 IPR004846 Type II/III secretion system NIY04_17200 IPR013356 Type II secretion system GspD NIY04_17200 IPR004845 Type II secretion system GspD, conserved site NIY04_17200 IPR001775 GspD/PilQ family NIY04_17200 IPR005644 NolW-like NIY04_17215 IPR027444 Histone-like protein H-NS, C-terminal domain NIY04_17215 IPR001801 Histone-like protein H-NS NIY04_17215 IPR037150 Histone-like protein H-NS, C-terminal domain superfamily NIY04_17240 IPR022417 Porphobilinogen deaminase, N-terminal NIY04_17240 IPR022419 Porphobilinogen deaminase, dipyrromethane cofactor binding site NIY04_17240 IPR000860 Porphobilinogen deaminase NIY04_17240 IPR022418 Porphobilinogen deaminase, C-terminal NIY04_17240 IPR036803 Porphobilinogen deaminase, C-terminal domain superfamily NIY04_17245 IPR007492 LytTR DNA-binding domain NIY04_17245 IPR001789 Signal transduction response regulator, receiver domain NIY04_17245 IPR011006 CheY-like superfamily NIY04_17250 IPR029016 GAF-like domain superfamily NIY04_17250 IPR003594 Histidine kinase/HSP90-like ATPase NIY04_17250 IPR036890 Histidine kinase/HSP90-like ATPase superfamily NIY04_17250 IPR010559 Signal transduction histidine kinase, internal region NIY04_17250 IPR011620 Signal transduction histidine kinase, 5TM receptor LytS, transmembrane region NIY04_17255 IPR022761 Fumarate lyase, N-terminal NIY04_17255 IPR008948 L-Aspartase-like NIY04_17255 IPR000362 Fumarate lyase family NIY04_17255 IPR024083 Fumarase/histidase, N-terminal NIY04_17255 IPR009049 Argininosuccinate lyase NIY04_17255 IPR020557 Fumarate lyase, conserved site NIY04_17255 IPR029419 Argininosuccinate lyase, C-terminal NIY04_17260 IPR007457 Fe(II) trafficking protein YggX NIY04_17260 IPR036766 Fe(II) trafficking protein YggX superfamily NIY04_17265 IPR028366 Phosphate transport system protein PhoU NIY04_17265 IPR038078 PhoU-like domain superfamily NIY04_17265 IPR026022 PhoU domain NIY04_17270 IPR003423 Outer membrane efflux protein NIY04_17270 IPR010130 Type I secretion outer membrane protein, TolC NIY04_17275 IPR000620 EamA domain NIY04_17275 IPR004779 Carboxylate/Amino Acid/Amine Transporter NIY04_17290 IPR037509 Phosphomethylpyrimidine synthase NIY04_17290 IPR038521 ThiC/Bza superfamily NIY04_17290 IPR002817 Phosphomethylpyrimidine synthase ThiC/5-hydroxybenzimidazole synthase BzaA/B NIY04_17290 IPR025747 ThiC-associated domain NIY04_17295 IPR000086 NUDIX hydrolase domain NIY04_17295 IPR015797 NUDIX hydrolase-like domain superfamily NIY04_17295 IPR004385 Nucleoside diphosphate pyrophosphatase NIY04_17300 IPR029052 Metallo-dependent phosphatase-like NIY04_17300 IPR026575 3,5-cyclic adenosine monophosphate phosphodiesterase CpdA NIY04_17300 IPR004843 Calcineurin-like phosphoesterase domain, ApaH type NIY04_17305 IPR020460 Zinc finger, DksA/TraR C4-type, bacteria NIY04_17305 IPR020458 Zinc finger, DksA/TraR C4-type conserved site NIY04_17305 IPR037187 DksA, N-terminal domain superfamily NIY04_17305 IPR000962 Zinc finger, DksA/TraR C4-type NIY04_17305 IPR012784 RNA polymerase-binding transcription factor DksA NIY04_17310 IPR022380 Glutamyl-Q tRNA(Asp) synthetase NIY04_17310 IPR000924 Glutamyl/glutaminyl-tRNA synthetase NIY04_17310 IPR020058 Glutamyl/glutaminyl-tRNA synthetase, class Ib, catalytic domain NIY04_17310 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold NIY04_17315 IPR001182 Probable peptidoglycan glycosyltransferase FtsW/RodA NIY04_17315 IPR018365 Cell cycle, FtsW / RodA / SpoVE, conserved site NIY04_17315 IPR013437 Probable peptidoglycan glycosyltransferase FtsW NIY04_17320 IPR013221 Mur ligase, central NIY04_17320 IPR036615 Mur ligase, C-terminal domain superfamily NIY04_17320 IPR004101 Mur ligase, C-terminal NIY04_17320 IPR005762 UDP-N-acetylmuramoylalanine-D-glutamate ligase NIY04_17320 IPR036565 Mur-like, catalytic domain superfamily NIY04_17330 IPR003373 Ferrous iron transport protein B NIY04_17330 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIY04_17330 IPR011640 Ferrous iron transport protein B, C-terminal NIY04_17330 IPR011642 Nucleoside transporter/FeoB GTPase, Gate domain NIY04_17330 IPR006073 GTP binding domain NIY04_17330 IPR030389 FeoB-type guanine nucleotide-binding (G) domain NIY04_17340 IPR011932 Tyrosine recombinase XerD NIY04_17340 IPR004107 Integrase, SAM-like, N-terminal NIY04_17340 IPR023009 Tyrosine recombinase XerC/XerD NIY04_17340 IPR002104 Integrase, catalytic domain NIY04_17340 IPR013762 Integrase-like, catalytic domain superfamily NIY04_17340 IPR011010 DNA breaking-rejoining enzyme, catalytic core NIY04_17340 IPR010998 Integrase/recombinase, N-terminal NIY04_17345 IPR033954 Disulphide bond isomerase, DsbC/G NIY04_17345 IPR009094 Disulphide bond isomerase DsbC/G, N-terminal domain superfamily NIY04_17345 IPR012336 Thioredoxin-like fold NIY04_17345 IPR036249 Thioredoxin-like superfamily NIY04_17345 IPR017937 Thioredoxin, conserved site NIY04_17345 IPR013766 Thioredoxin domain NIY04_17345 IPR018950 Disulphide bond isomerase, DsbC/G, N-terminal NIY04_17350 IPR036291 NAD(P)-binding domain superfamily NIY04_17350 IPR001342 Homoserine dehydrogenase, catalytic NIY04_17350 IPR019811 Homoserine dehydrogenase, conserved site NIY04_17350 IPR002912 ACT domain NIY04_17350 IPR005106 Aspartate/homoserine dehydrogenase, NAD-binding NIY04_17350 IPR016204 Homoserine dehydrogenase NIY04_17355 IPR036052 Tryptophan synthase beta subunit-like PLP-dependent enzyme NIY04_17355 IPR026260 Threonine synthase, bacterial/archaeal NIY04_17355 IPR004450 Threonine synthase-like NIY04_17355 IPR000634 Serine/threonine dehydratase, pyridoxal-phosphate-binding site NIY04_17355 IPR001926 Pyridoxal-phosphate dependent enzyme NIY04_17360 IPR012338 Beta-lactamase/transpeptidase-like NIY04_17360 IPR001967 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A, N-terminal NIY04_17360 IPR018044 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A NIY04_17365 IPR016032 Signal transduction response regulator, C-terminal effector NIY04_17365 IPR001789 Signal transduction response regulator, receiver domain NIY04_17365 IPR000792 Transcription regulator LuxR, C-terminal NIY04_17365 IPR011006 CheY-like superfamily NIY04_17370 IPR003594 Histidine kinase/HSP90-like ATPase NIY04_17370 IPR036890 Histidine kinase/HSP90-like ATPase superfamily NIY04_17370 IPR005467 Histidine kinase domain NIY04_17370 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily NIY04_17370 IPR000014 PAS domain NIY04_17370 IPR004358 Signal transduction histidine kinase-related protein, C-terminal NIY04_17370 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain NIY04_17375 IPR002078 RNA polymerase sigma factor 54 interaction domain NIY04_17375 IPR025944 Sigma-54 interaction domain, conserved site NIY04_17375 IPR025943 Sigma-54 interaction domain, ATP-binding site 2 NIY04_17375 IPR025662 Sigma-54 interaction domain, ATP-binding site 1 NIY04_17375 IPR001789 Signal transduction response regulator, receiver domain NIY04_17375 IPR002197 DNA binding HTH domain, Fis-type NIY04_17375 IPR009057 Homeobox-like domain superfamily NIY04_17375 IPR011006 CheY-like superfamily NIY04_17375 IPR003593 AAA+ ATPase domain NIY04_17375 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIY04_17380 IPR004447 C-terminal-processing peptidase S41A NIY04_17380 IPR005151 Tail specific protease NIY04_17380 IPR001478 PDZ domain NIY04_17380 IPR029045 ClpP/crotonase-like domain superfamily NIY04_17380 IPR036034 PDZ superfamily NIY04_17385 IPR017850 Alkaline-phosphatase-like, core domain superfamily NIY04_17385 IPR011258 BPG-independent PGAM, N-terminal NIY04_17385 IPR006124 Metalloenzyme NIY04_17385 IPR036646 BPG-independent phosphoglycerate mutase, domain B superfamily NIY04_17385 IPR005995 Phosphoglycerate mutase, 2,3-bisphosphoglycerate-independent NIY04_17390 IPR030923 LPS export ABC transporter permease LptG NIY04_17390 IPR005495 Permease LptG/LptF-related NIY04_17400 IPR023042 Peptidase M17, leucine aminopeptidase NIY04_17400 IPR008283 Peptidase M17, leucyl aminopeptidase, N-terminal NIY04_17400 IPR011356 Peptidase M17, leucine aminopeptidase/peptidase B NIY04_17400 IPR000819 Peptidase M17, leucyl aminopeptidase, C-terminal NIY04_17420 IPR017938 Riboflavin synthase-like beta-barrel NIY04_17420 IPR026017 Lumazine-binding domain NIY04_17420 IPR023366 ATP synthase subunit alpha, N-terminal domain-like superfamily NIY04_17420 IPR001783 Lumazine-binding protein NIY04_17430 IPR002734 Bacterial bifunctional deaminase-reductase, C-terminal NIY04_17430 IPR016192 APOBEC/CMP deaminase, zinc-binding NIY04_17430 IPR002125 Cytidine and deoxycytidylate deaminase domain NIY04_17430 IPR016193 Cytidine deaminase-like NIY04_17430 IPR024072 Dihydrofolate reductase-like domain superfamily NIY04_17430 IPR004794 Riboflavin biosynthesis protein RibD NIY04_17430 IPR011549 Riboflavin-specific deaminase, C-terminal NIY04_17435 IPR003796 Ribonucleotide reductase regulator NrdR-like NIY04_17435 IPR005144 ATP-cone domain NIY04_17440 IPR024041 Ammonium transporter AmtB-like domain NIY04_17440 IPR018047 Ammonium transporter, conserved site NIY04_17440 IPR001905 Ammonium transporter NIY04_17440 IPR029020 Ammonium/urea transporter NIY04_17445 IPR017918 Nitrogen regulatory protein PII, conserved site NIY04_17445 IPR002332 Nitrogen regulatory protein P-II, urydylation site NIY04_17445 IPR015867 Nitrogen regulatory protein PII/ATP phosphoribosyltransferase, C-terminal NIY04_17445 IPR011322 Nitrogen regulatory PII-like, alpha/beta NIY04_17445 IPR002187 Nitrogen regulatory protein PII NIY04_17465 IPR018045 Sulphate anion transporter, conserved site NIY04_17465 IPR011547 SLC26A/SulP transporter domain NIY04_17465 IPR036513 STAS domain superfamily NIY04_17465 IPR002645 STAS domain NIY04_17465 IPR001902 SLC26A/SulP transporter NIY04_17470 IPR006015 Universal stress protein A family NIY04_17470 IPR006016 UspA NIY04_17500 IPR036397 Ribonuclease H superfamily NIY04_17500 IPR001584 Integrase, catalytic core NIY04_17500 IPR012337 Ribonuclease H-like superfamily NIY04_17535 IPR005263 4-hydroxy-tetrahydrodipicolinate synthase, DapA NIY04_17535 IPR002220 DapA-like NIY04_17535 IPR020625 Schiff base-forming aldolase, active site NIY04_17535 IPR020624 Schiff base-forming aldolase, conserved site NIY04_17535 IPR013785 Aldolase-type TIM barrel NIY04_17550 IPR005318 Outer membrane porin, bacterial NIY04_17550 IPR023614 Porin domain superfamily NIY04_17555 IPR036649 Inorganic pyrophosphatase superfamily NIY04_17555 IPR008162 Inorganic pyrophosphatase NIY04_17570 IPR025110 AMP-binding enzyme, C-terminal domain NIY04_17570 IPR020845 AMP-binding, conserved site NIY04_17570 IPR000873 AMP-dependent synthetase/ligase NIY04_17570 IPR042099 AMP-dependent synthetase-like superfamily NIY04_17575 IPR005742 DNA topoisomerase IV, subunit A, Gram-negative NIY04_17575 IPR013757 Type IIA DNA topoisomerase subunit A, alpha-helical domain superfamily NIY04_17575 IPR013758 DNA topoisomerase, type IIA, subunit A/ C-terminal, alpha-beta NIY04_17575 IPR002205 DNA topoisomerase, type IIA, subunit A/C-terminal NIY04_17575 IPR035516 DNA gyrase/topoisomerase IV, subunit A, C-terminal NIY04_17575 IPR006691 DNA gyrase/topoisomerase IV, subunit A, C-terminal repeat NIY04_17575 IPR013760 DNA topoisomerase, type IIA-like domain superfamily NIY04_17580 IPR011701 Major facilitator superfamily NIY04_17580 IPR020846 Major facilitator superfamily domain NIY04_17580 IPR036259 MFS transporter superfamily NIY04_17580 IPR005829 Sugar transporter, conserved site NIY04_17585 IPR005115 Uncharacterised domain UPF0126 NIY04_17590 IPR023006 Uncharacterised protein family UPF0225 NIY04_17590 IPR004027 SEC-C motif NIY04_17590 IPR032710 NTF2-like domain superfamily NIY04_17595 IPR005496 Integral membrane protein TerC NIY04_17595 IPR005170 Transporter-associated domain NIY04_17595 IPR016169 FAD-binding, type PCMH, subdomain 2 NIY04_17595 IPR036318 FAD-binding, type PCMH-like superfamily NIY04_17595 IPR000644 CBS domain NIY04_17600 IPR005269 Cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG NIY04_17600 IPR031100 LOG family NIY04_17605 IPR023721 Multidrug resistance protein MdtD NIY04_17605 IPR036259 MFS transporter superfamily NIY04_17605 IPR020846 Major facilitator superfamily domain NIY04_17605 IPR011701 Major facilitator superfamily NIY04_17615 IPR022880 DNA polymerase IV NIY04_17615 IPR001126 UmuC domain NIY04_17615 IPR017961 DNA polymerase, Y-family, little finger domain NIY04_17615 IPR036775 DNA polymerase, Y-family, little finger domain superfamily NIY04_17615 IPR024728 DNA polymerase type-Y, HhH motif NIY04_17635 IPR013704 Uncharacterised protein family UPF0313, N-terminal NIY04_17635 IPR024560 Uncharacterised protein family UPF0313, C-terminal NIY04_17635 IPR006638 Elp3/MiaB/NifB NIY04_17635 IPR023404 Radical SAM, alpha/beta horseshoe NIY04_17635 IPR007197 Radical SAM NIY04_17635 IPR020612 Methylthiotransferase, conserved site NIY04_17635 IPR022946 Uncharacterised protein family UPF0313 NIY04_17655 IPR008254 Flavodoxin/nitric oxide synthase NIY04_17655 IPR010089 Flavoprotein WrbA-like NIY04_17655 IPR005025 NADPH-dependent FMN reductase-like NIY04_17655 IPR037513 NAD(P)H dehydrogenase (quinone), prokaryotic NIY04_17655 IPR029039 Flavoprotein-like superfamily NIY04_17665 IPR005856 Cysteine synthase NIY04_17665 IPR005859 Cysteine synthase CysK NIY04_17665 IPR001216 Cysteine synthase/cystathionine beta-synthase, pyridoxal-phosphate attachment site NIY04_17665 IPR036052 Tryptophan synthase beta subunit-like PLP-dependent enzyme NIY04_17665 IPR001926 Pyridoxal-phosphate dependent enzyme NIY04_17725 IPR023635 Peptide deformylase NIY04_17725 IPR036821 Peptide deformylase superfamily NIY04_17735 IPR036388 Winged helix-like DNA-binding domain superfamily NIY04_17735 IPR041614 DprA, winged helix domain NIY04_17735 IPR003488 DNA recombination-mediator protein A NIY04_17740 IPR006070 YrdC-like domain NIY04_17740 IPR023535 Threonylcarbamoyl-AMP synthase NIY04_17740 IPR017945 DHBP synthase RibB-like alpha/beta domain superfamily NIY04_17745 IPR000620 EamA domain NIY04_17750 IPR009057 Homeobox-like domain superfamily NIY04_17750 IPR001647 DNA-binding HTH domain, TetR-type NIY04_17750 IPR036271 Tetracyclin repressor-like, C-terminal domain superfamily NIY04_17755 IPR011701 Major facilitator superfamily NIY04_17755 IPR020846 Major facilitator superfamily domain NIY04_17755 IPR036259 MFS transporter superfamily NIY04_17765 IPR033674 Thioredoxin/glutathione peroxidase BtuE NIY04_17765 IPR000889 Glutathione peroxidase NIY04_17765 IPR029759 Glutathione peroxidase active site NIY04_17765 IPR029760 Glutathione peroxidase conserved site NIY04_17765 IPR036249 Thioredoxin-like superfamily NIY04_17775 IPR022548 Domain of unknown function DUF2846 NIY04_17775 IPR016596 Protein of unknown function UCP012335 NIY04_17780 IPR001469 ATP synthase, F1 complex, delta/epsilon subunit NIY04_17780 IPR020546 ATP synthase, F1 complex, delta/epsilon subunit, N-terminal NIY04_17780 IPR036794 ATP synthase delta/epsilon subunit, C-terminal domain superfamily NIY04_17780 IPR036771 F0F1 ATP synthase delta/epsilon subunit, N-terminal NIY04_17785 IPR005722 ATP synthase, F1 complex, beta subunit NIY04_17785 IPR020003 ATPase, alpha/beta subunit, nucleotide-binding domain, active site NIY04_17785 IPR004100 ATPase, F1/V1/A1 complex, alpha/beta subunit, N-terminal domain NIY04_17785 IPR036121 ATPase, F1/V1/A1 complex, alpha/beta subunit, N-terminal domain superfamily NIY04_17785 IPR000194 ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain NIY04_17785 IPR024034 ATPase, F1/V1 complex, beta/alpha subunit, C-terminal NIY04_17785 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIY04_17785 IPR003593 AAA+ ATPase domain NIY04_17790 IPR035968 ATP synthase, F1 complex, gamma subunit superfamily NIY04_17790 IPR000131 ATP synthase, F1 complex, gamma subunit NIY04_17790 IPR023632 ATP synthase, F1 complex, gamma subunit conserved site NIY04_17795 IPR000793 ATP synthase, alpha subunit, C-terminal NIY04_17795 IPR023366 ATP synthase subunit alpha, N-terminal domain-like superfamily NIY04_17795 IPR038376 ATP synthase, alpha subunit, C-terminal domain superfamily NIY04_17795 IPR033732 ATP synthase, F1 complex, alpha subunit nucleotide-binding domain NIY04_17795 IPR005294 ATP synthase, F1 complex, alpha subunit NIY04_17795 IPR020003 ATPase, alpha/beta subunit, nucleotide-binding domain, active site NIY04_17795 IPR004100 ATPase, F1/V1/A1 complex, alpha/beta subunit, N-terminal domain NIY04_17795 IPR036121 ATPase, F1/V1/A1 complex, alpha/beta subunit, N-terminal domain superfamily NIY04_17795 IPR000194 ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain NIY04_17795 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIY04_17800 IPR020781 ATPase, OSCP/delta subunit, conserved site NIY04_17800 IPR000711 ATPase, OSCP/delta subunit NIY04_17800 IPR026015 F1F0 ATP synthase OSCP/delta subunit, N-terminal domain superfamily NIY04_17805 IPR028987 F-type ATP synthase subunit B-like, membrane domain superfamily NIY04_17805 IPR002146 ATP synthase, F0 complex, subunit b/b', bacterial/chloroplast NIY04_17805 IPR005864 ATP synthase, F0 complex, subunit b, bacterial NIY04_17810 IPR035921 F/V-ATP synthase subunit C superfamily NIY04_17810 IPR005953 ATP synthase, F0 complex, subunit C, bacterial/chloroplast NIY04_17810 IPR000454 ATP synthase, F0 complex, subunit C NIY04_17810 IPR020537 ATP synthase, F0 complex, subunit C, DCCD-binding site NIY04_17810 IPR038662 F1F0 ATP synthase subunit C superfamily NIY04_17810 IPR002379 V-ATPase proteolipid subunit C-like domain NIY04_17815 IPR023011 ATP synthase, F0 complex, subunit A, active site NIY04_17815 IPR000568 ATP synthase, F0 complex, subunit A NIY04_17815 IPR035908 ATP synthase, F0 complex, subunit A superfamily NIY04_17835 IPR003439 ABC transporter-like NIY04_17835 IPR017871 ABC transporter, conserved site NIY04_17835 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIY04_17835 IPR017882 Zinc import ATP-binding protein ZnuC NIY04_17835 IPR003593 AAA+ ATPase domain NIY04_17840 IPR037294 ABC transporter, BtuC-like NIY04_17840 IPR001626 ABC transporter, TroCD-like NIY04_17845 IPR004778 Homoserine/Threonine efflux protein NIY04_17845 IPR001123 Amino acid exporter protein, LeuE-type NIY04_17850 IPR011008 Dimeric alpha-beta barrel NIY04_17850 IPR006314 Dyp-type peroxidase NIY04_17855 IPR015884 Malic enzyme, conserved site NIY04_17855 IPR012301 Malic enzyme, N-terminal domain NIY04_17855 IPR037062 Malic enzyme, N-terminal domain superfamily NIY04_17855 IPR012302 Malic enzyme, NAD-binding NIY04_17855 IPR001891 Malic oxidoreductase NIY04_17855 IPR036291 NAD(P)-binding domain superfamily NIY04_17855 IPR023667 NAD-dependent malic enzyme, proteobacteria NIY04_17860 IPR001278 Arginine-tRNA ligase NIY04_17860 IPR036695 Arginyl tRNA synthetase N-terminal domain superfamily NIY04_17860 IPR035684 Arginyl-tRNA synthetase, catalytic core domain NIY04_17860 IPR008909 DALR anticodon binding NIY04_17860 IPR005148 Arginyl tRNA synthetase N-terminal domain NIY04_17860 IPR009080 Aminoacyl-tRNA synthetase, class Ia, anticodon-binding NIY04_17880 IPR011051 RmlC-like cupin domain superfamily NIY04_17880 IPR003829 Pirin, N-terminal domain NIY04_17880 IPR008778 Pirin, C-terminal domain NIY04_17880 IPR014710 RmlC-like jelly roll fold NIY04_17880 IPR012093 Pirin NIY04_17890 IPR036390 Winged helix DNA-binding domain superfamily NIY04_17890 IPR036388 Winged helix-like DNA-binding domain superfamily NIY04_17890 IPR005149 Transcription regulator PadR, N-terminal NIY04_17895 IPR025184 Domain of unknown function DUF4111 NIY04_17895 IPR002934 Polymerase, nucleotidyl transferase domain NIY04_17895 IPR024172 Streptomycin 3''-adenylyltransferase NIY04_17900 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold NIY04_17900 IPR029062 Class I glutamine amidotransferase-like NIY04_17900 IPR017926 Glutamine amidotransferase NIY04_17900 IPR001674 GMP synthase, C-terminal NIY04_17900 IPR004739 GMP synthase, glutamine amidotransferase NIY04_17900 IPR022955 GMP synthase NIY04_17900 IPR025777 GMP synthetase ATP pyrophosphatase domain NIY04_17900 IPR022310 NAD/GMP synthase NIY04_17905 IPR007383 Protein of unknown function DUF445 NIY04_17905 IPR016991 Protein of unknown function UCP032178 NIY04_17910 IPR032808 DoxX family NIY04_17915 IPR032816 SNARE associated Golgi protein NIY04_17915 IPR032818 DedA family NIY04_17930 IPR025669 AAA domain NIY04_17930 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIY04_17940 IPR002634 BolA protein NIY04_17940 IPR036065 BolA-like superfamily NIY04_17955 IPR037143 4'-phosphopantetheinyl transferase domain superfamily NIY04_17955 IPR004568 Phosphopantetheine-protein transferase domain NIY04_17955 IPR008278 4'-phosphopantetheinyl transferase domain NIY04_17960 IPR005888 dTDP-glucose 4,6-dehydratase NIY04_17960 IPR016040 NAD(P)-binding domain NIY04_17960 IPR036291 NAD(P)-binding domain superfamily NIY04_17960 IPR020904 Short-chain dehydrogenase/reductase, conserved site NIY04_17975 IPR001242 Condensation domain NIY04_17975 IPR010071 Amino acid adenylation domain NIY04_17975 IPR029058 Alpha/Beta hydrolase fold NIY04_17975 IPR036736 ACP-like superfamily NIY04_17975 IPR025110 AMP-binding enzyme, C-terminal domain NIY04_17975 IPR000873 AMP-dependent synthetase/ligase NIY04_17975 IPR042099 AMP-dependent synthetase-like superfamily NIY04_17975 IPR023213 Chloramphenicol acetyltransferase-like domain superfamily NIY04_17975 IPR020806 Polyketide synthase, phosphopantetheine-binding domain NIY04_17975 IPR020845 AMP-binding, conserved site NIY04_17975 IPR006162 Phosphopantetheine attachment site NIY04_17975 IPR009081 Phosphopantetheine binding ACP domain NIY04_17975 IPR001031 Thioesterase NIY04_17980 IPR036736 ACP-like superfamily NIY04_17980 IPR029058 Alpha/Beta hydrolase fold NIY04_17980 IPR020615 Thiolase, acyl-enzyme intermediate active site NIY04_17980 IPR016039 Thiolase-like NIY04_17980 IPR001031 Thioesterase NIY04_17980 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase NIY04_17980 IPR006162 Phosphopantetheine attachment site NIY04_17980 IPR009081 Phosphopantetheine binding ACP domain NIY04_17980 IPR042104 Polyketide synthase, dehydratase domain superfamily NIY04_17980 IPR020806 Polyketide synthase, phosphopantetheine-binding domain NIY04_17980 IPR014030 Beta-ketoacyl synthase, N-terminal NIY04_17980 IPR018201 Beta-ketoacyl synthase, active site NIY04_17980 IPR014031 Beta-ketoacyl synthase, C-terminal NIY04_17980 IPR013217 Methyltransferase type 12 NIY04_17980 IPR032821 Ketoacyl-synthetase, C-terminal extension NIY04_17980 IPR020841 Polyketide synthase, beta-ketoacyl synthase domain NIY04_17980 IPR020807 Polyketide synthase, dehydratase domain NIY04_17985 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal NIY04_17985 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal NIY04_17985 IPR037069 Acyl-CoA dehydrogenase/oxidase, N-terminal domain superfamily NIY04_17985 IPR006089 Acyl-CoA dehydrogenase, conserved site NIY04_17985 IPR006091 Acyl-CoA oxidase/dehydrogenase, central domain NIY04_17985 IPR036250 Acyl-CoA dehydrogenase-like, C-terminal NIY04_17985 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily NIY04_17990 IPR000873 AMP-dependent synthetase/ligase NIY04_17990 IPR042099 AMP-dependent synthetase-like superfamily NIY04_17995 IPR016032 Signal transduction response regulator, C-terminal effector NIY04_17995 IPR005143 Transcription factor LuxR-like, autoinducer-binding domain NIY04_17995 IPR036693 Transcription factor LuxR-like, autoinducer-binding domain superfamily NIY04_17995 IPR000792 Transcription regulator LuxR, C-terminal NIY04_17995 IPR036388 Winged helix-like DNA-binding domain superfamily NIY04_18005 IPR001690 Autoinducer synthase NIY04_18005 IPR016181 Acyl-CoA N-acyltransferase NIY04_18010 IPR011701 Major facilitator superfamily NIY04_18010 IPR005828 Major facilitator, sugar transporter-like NIY04_18010 IPR036259 MFS transporter superfamily NIY04_18010 IPR004736 MFS transporter, metabolite:H symporter NIY04_18010 IPR005829 Sugar transporter, conserved site NIY04_18010 IPR020846 Major facilitator superfamily domain NIY04_18015 IPR029045 ClpP/crotonase-like domain superfamily NIY04_18015 IPR018376 Enoyl-CoA hydratase/isomerase, conserved site NIY04_18015 IPR001753 Enoyl-CoA hydratase/isomerase NIY04_18015 IPR014748 Enoyl-CoA hydratase, C-terminal NIY04_18020 IPR014748 Enoyl-CoA hydratase, C-terminal NIY04_18020 IPR001753 Enoyl-CoA hydratase/isomerase NIY04_18020 IPR018376 Enoyl-CoA hydratase/isomerase, conserved site NIY04_18020 IPR029045 ClpP/crotonase-like domain superfamily NIY04_18025 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily NIY04_18025 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal NIY04_18025 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal NIY04_18025 IPR036250 Acyl-CoA dehydrogenase-like, C-terminal NIY04_18025 IPR006091 Acyl-CoA oxidase/dehydrogenase, central domain NIY04_18025 IPR006089 Acyl-CoA dehydrogenase, conserved site NIY04_18025 IPR037069 Acyl-CoA dehydrogenase/oxidase, N-terminal domain superfamily NIY04_18030 IPR025110 AMP-binding enzyme, C-terminal domain NIY04_18030 IPR020845 AMP-binding, conserved site NIY04_18030 IPR000873 AMP-dependent synthetase/ligase NIY04_18030 IPR042099 AMP-dependent synthetase-like superfamily NIY04_18035 IPR002204 3-hydroxyisobutyrate dehydrogenase-related, conserved site NIY04_18035 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily NIY04_18035 IPR013328 6-phosphogluconate dehydrogenase, domain 2 NIY04_18035 IPR006115 6-phosphogluconate dehydrogenase, NADP-binding NIY04_18035 IPR011548 3-hydroxyisobutyrate dehydrogenase NIY04_18035 IPR015815 3-hydroxyisobutyrate dehydrogenase-related NIY04_18035 IPR029154 3-hydroxyisobutyrate dehydrogenase, NAD-binding domain NIY04_18035 IPR036291 NAD(P)-binding domain superfamily NIY04_18040 IPR016163 Aldehyde dehydrogenase, C-terminal NIY04_18040 IPR010061 Methylmalonate-semialdehyde dehydrogenase NIY04_18040 IPR015590 Aldehyde dehydrogenase domain NIY04_18040 IPR016162 Aldehyde dehydrogenase, N-terminal NIY04_18040 IPR016160 Aldehyde dehydrogenase, cysteine active site NIY04_18040 IPR016161 Aldehyde/histidinol dehydrogenase NIY04_18050 IPR004840 Amino acid permease, conserved site NIY04_18050 IPR004841 Amino acid permease/ SLC12A domain NIY04_18055 IPR004840 Amino acid permease, conserved site NIY04_18055 IPR004841 Amino acid permease/ SLC12A domain NIY04_18060 IPR035959 RutC-like superfamily NIY04_18060 IPR035709 RutC family, YoaB-like NIY04_18060 IPR019897 RidA, conserved site NIY04_18060 IPR006175 YjgF/YER057c/UK114 family NIY04_18065 IPR029066 PLP-binding barrel NIY04_18065 IPR020622 Alanine racemase, pyridoxal-phosphate attachment site NIY04_18065 IPR001608 Alanine racemase, N-terminal NIY04_18065 IPR009006 Alanine racemase/group IV decarboxylase, C-terminal NIY04_18065 IPR000821 Alanine racemase NIY04_18065 IPR011079 Alanine racemase, C-terminal NIY04_18070 IPR036188 FAD/NAD(P)-binding domain superfamily NIY04_18070 IPR023080 D-amino acid dehydrogenase DadA NIY04_18070 IPR006076 FAD dependent oxidoreductase NIY04_18075 IPR011991 ArsR-like helix-turn-helix domain NIY04_18075 IPR036390 Winged helix DNA-binding domain superfamily NIY04_18075 IPR036388 Winged helix-like DNA-binding domain superfamily NIY04_18075 IPR019885 Transcription regulator HTH, AsnC-type, conserved site NIY04_18075 IPR019887 Transcription regulator AsnC/Lrp, ligand binding domain NIY04_18075 IPR019888 Transcription regulator AsnC-type NIY04_18075 IPR011008 Dimeric alpha-beta barrel NIY04_18075 IPR000485 AsnC-type HTH domain NIY04_18085 IPR010105 TonB-dependent siderophore receptor NIY04_18085 IPR036942 TonB-dependent receptor-like, beta-barrel domain superfamily NIY04_18085 IPR012910 TonB-dependent receptor, plug domain NIY04_18085 IPR037066 TonB-dependent receptor, plug domain superfamily NIY04_18085 IPR039423 TonB-dependent receptor-like NIY04_18085 IPR000531 TonB-dependent receptor-like, beta-barrel NIY04_18100 IPR006145 Pseudouridine synthase, RsuA/RluA NIY04_18100 IPR020103 Pseudouridine synthase, catalytic domain superfamily NIY04_18100 IPR006225 Pseudouridine synthase, RluC/RluD NIY04_18100 IPR006224 Pseudouridine synthase, RluC/RluD, conserved site NIY04_18140 IPR028244 Putative type VI secretion system, Rhs element associated Vgr domain NIY04_18140 IPR006533 Type VI secretion system, RhsGE-associated Vgr protein NIY04_18140 IPR006531 Gp5 N-terminal NIY04_18140 IPR018769 Domain of unknown function DUF2345, Vgr C-terminal NIY04_18140 IPR037026 Vgr protein, OB-fold domain superfamily NIY04_18140 IPR017847 Type VI secretion system, RhsGE-associated Vgr family subset NIY04_18150 IPR020841 Polyketide synthase, beta-ketoacyl synthase domain NIY04_18150 IPR014030 Beta-ketoacyl synthase, N-terminal NIY04_18150 IPR000794 Beta-ketoacyl synthase NIY04_18150 IPR018201 Beta-ketoacyl synthase, active site NIY04_18150 IPR014031 Beta-ketoacyl synthase, C-terminal NIY04_18150 IPR016039 Thiolase-like NIY04_18180 IPR012708 2-methylisocitrate dehydratase AcnD, Fe/S-dependent NIY04_18180 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain NIY04_18180 IPR015928 Aconitase/3-isopropylmalate dehydratase, swivel NIY04_18180 IPR006249 Aconitase/Iron-responsive element-binding protein 2 NIY04_18180 IPR036008 Aconitase, iron-sulfur domain NIY04_18180 IPR000573 Aconitase A/isopropylmalate dehydratase small subunit, swivel domain NIY04_18180 IPR015931 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha, subdomain 1/3 NIY04_18185 IPR036969 Citrate synthase superfamily NIY04_18185 IPR016143 Citrate synthase-like, small alpha subdomain NIY04_18185 IPR002020 Citrate synthase NIY04_18185 IPR019810 Citrate synthase active site NIY04_18185 IPR024176 Citrate synthase, bacterial-type NIY04_18185 IPR011278 2-methylcitrate synthase/citrate synthase type I NIY04_18185 IPR016142 Citrate synthase-like, large alpha subdomain NIY04_18190 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain superfamily NIY04_18190 IPR012695 2-methylisocitrate lyase NIY04_18190 IPR018523 Isocitrate lyase/phosphorylmutase, conserved site NIY04_18190 IPR039556 ICL/PEPM domain NIY04_18190 IPR040442 Pyruvate kinase-like domain superfamily NIY04_18195 IPR000485 AsnC-type HTH domain NIY04_18195 IPR011711 GntR, C-terminal NIY04_18195 IPR008920 Transcription regulator FadR/GntR, C-terminal NIY04_18195 IPR000524 Transcription regulator HTH, GntR NIY04_18195 IPR036388 Winged helix-like DNA-binding domain superfamily NIY04_18195 IPR036390 Winged helix DNA-binding domain superfamily NIY04_18205 IPR015421 Pyridoxal phosphate-dependent transferase, major domain NIY04_18205 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 NIY04_18205 IPR004838 Aminotransferases, class-I, pyridoxal-phosphate-binding site NIY04_18205 IPR000796 Aspartate/other aminotransferase NIY04_18205 IPR015424 Pyridoxal phosphate-dependent transferase NIY04_18205 IPR004839 Aminotransferase, class I/classII NIY04_18210 IPR016172 D-lactate dehydrogenase, C-terminal subdomain 1 NIY04_18210 IPR016173 D-lactate dehydrogenase, C-terminal subdomain 2 NIY04_18210 IPR012256 D-lactate dehydrogenase NIY04_18210 IPR015409 D-lactate dehydrogenase, membrane binding, C-terminal NIY04_18210 IPR036318 FAD-binding, type PCMH-like superfamily NIY04_18210 IPR016164 FAD-linked oxidase-like, C-terminal NIY04_18210 IPR016169 FAD-binding, type PCMH, subdomain 2 NIY04_18210 IPR016167 FAD-binding, type PCMH, subdomain 1 NIY04_18210 IPR006094 FAD linked oxidase, N-terminal NIY04_18210 IPR016166 FAD-binding domain, PCMH-type NIY04_18215 IPR013785 Aldolase-type TIM barrel NIY04_18215 IPR012133 Alpha-hydroxy acid dehydrogenase, FMN-dependent NIY04_18215 IPR000262 FMN-dependent dehydrogenase NIY04_18215 IPR037396 FMN hydroxy acid dehydrogenase domain NIY04_18215 IPR008259 FMN-dependent alpha-hydroxy acid dehydrogenase, active site NIY04_18215 IPR020920 L-lactate dehydrogenase, bacterial NIY04_18220 IPR011711 GntR, C-terminal NIY04_18220 IPR008920 Transcription regulator FadR/GntR, C-terminal NIY04_18220 IPR000524 Transcription regulator HTH, GntR NIY04_18220 IPR036388 Winged helix-like DNA-binding domain superfamily NIY04_18220 IPR036390 Winged helix DNA-binding domain superfamily NIY04_18225 IPR003804 L-lactate permease NIY04_18230 IPR005844 Alpha-D-phosphohexomutase, alpha/beta/alpha domain I NIY04_18230 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III NIY04_18230 IPR005845 Alpha-D-phosphohexomutase, alpha/beta/alpha domain II NIY04_18230 IPR005846 Alpha-D-phosphohexomutase, alpha/beta/alpha domain III NIY04_18230 IPR005843 Alpha-D-phosphohexomutase, C-terminal NIY04_18230 IPR036900 Alpha-D-phosphohexomutase, C-terminal domain superfamily NIY04_18230 IPR005841 Alpha-D-phosphohexomutase superfamily NIY04_18230 IPR016066 Alpha-D-phosphohexomutase, conserved site NIY04_18235 IPR036291 NAD(P)-binding domain superfamily NIY04_18235 IPR005886 UDP-glucose 4-epimerase NIY04_18235 IPR016040 NAD(P)-binding domain NIY04_18240 IPR023096 Phosphoglucose isomerase, C-terminal NIY04_18240 IPR035482 Phosphoglucose isomerase, SIS domain 2 NIY04_18240 IPR035476 Phosphoglucose isomerase, SIS domain 1 NIY04_18240 IPR018189 Phosphoglucose isomerase, conserved site NIY04_18240 IPR001672 Phosphoglucose isomerase (PGI) NIY04_18245 IPR028357 UDP-glucose 6-dehydrogenase, bacterial type NIY04_18245 IPR001732 UDP-glucose/GDP-mannose dehydrogenase, N-terminal NIY04_18245 IPR014026 UDP-glucose/GDP-mannose dehydrogenase, dimerisation NIY04_18245 IPR036220 UDP-glucose/GDP-mannose dehydrogenase, C-terminal domain superfamily NIY04_18245 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily NIY04_18245 IPR036291 NAD(P)-binding domain superfamily NIY04_18245 IPR017476 UDP-glucose/GDP-mannose dehydrogenase NIY04_18245 IPR014027 UDP-glucose/GDP-mannose dehydrogenase, C-terminal NIY04_18250 IPR005771 UTP--glucose-1-phosphate uridylyltransferase, bacterial/archaeal-type NIY04_18250 IPR005835 Nucleotidyl transferase domain NIY04_18250 IPR029044 Nucleotide-diphospho-sugar transferases NIY04_18255 IPR003362 Bacterial sugar transferase NIY04_18260 IPR001173 Glycosyltransferase 2-like NIY04_18260 IPR029044 Nucleotide-diphospho-sugar transferases NIY04_18265 IPR001296 Glycosyl transferase, family 1 NIY04_18280 IPR001296 Glycosyl transferase, family 1 NIY04_18280 IPR028098 Glycosyltransferase subfamily 4-like, N-terminal domain NIY04_18280 IPR017814 Mycothiol biosynthesis protein, MshA NIY04_18285 IPR001451 Hexapeptide repeat NIY04_18285 IPR039369 Galactoside O-acetyltransferase LacA-like NIY04_18285 IPR024688 Maltose/galactoside acetyltransferase NIY04_18285 IPR011004 Trimeric LpxA-like superfamily NIY04_18295 IPR000653 DegT/DnrJ/EryC1/StrS aminotransferase NIY04_18295 IPR015424 Pyridoxal phosphate-dependent transferase NIY04_18295 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 NIY04_18295 IPR015421 Pyridoxal phosphate-dependent transferase, major domain NIY04_18300 IPR011004 Trimeric LpxA-like superfamily NIY04_18300 IPR001451 Hexapeptide repeat NIY04_18305 IPR000683 Oxidoreductase, N-terminal NIY04_18305 IPR036291 NAD(P)-binding domain superfamily NIY04_18305 IPR004104 Oxidoreductase, C-terminal NIY04_18310 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily NIY04_18310 IPR014027 UDP-glucose/GDP-mannose dehydrogenase, C-terminal NIY04_18310 IPR036220 UDP-glucose/GDP-mannose dehydrogenase, C-terminal domain superfamily NIY04_18310 IPR014026 UDP-glucose/GDP-mannose dehydrogenase, dimerisation NIY04_18310 IPR001732 UDP-glucose/GDP-mannose dehydrogenase, N-terminal NIY04_18310 IPR028359 UDP-N-acetyl-D-mannosamine/glucosamine dehydrogenase NIY04_18310 IPR017476 UDP-glucose/GDP-mannose dehydrogenase NIY04_18310 IPR036291 NAD(P)-binding domain superfamily NIY04_18315 IPR040716 Outer-membrane lipoprotein Wza, C-terminal domain NIY04_18315 IPR019554 Soluble ligand binding domain NIY04_18315 IPR003715 Polysaccharide export protein NIY04_18320 IPR017867 Protein-tyrosine phosphatase, low molecular weight NIY04_18320 IPR036196 Phosphotyrosine protein phosphatase I superfamily NIY04_18320 IPR023485 Phosphotyrosine protein phosphatase I NIY04_18325 IPR005702 Exopolysaccharide synthesis protein NIY04_18325 IPR032807 Tyrosine kinase, G-rich domain NIY04_18325 IPR003856 Polysaccharide chain length determinant N-terminal domain NIY04_18325 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIY04_18325 IPR025669 AAA domain NIY04_18330 IPR008104 Macrophage infectivity potentiator NIY04_18330 IPR001179 FKBP-type peptidyl-prolyl cis-trans isomerase domain NIY04_18330 IPR000774 Peptidyl-prolyl cis-trans isomerase, FKBP-type, N-terminal NIY04_18330 IPR036944 Peptidyl-prolyl cis-trans isomerase, FKBP-type, N-terminal domain superfamily NIY04_18335 IPR008104 Macrophage infectivity potentiator NIY04_18335 IPR000774 Peptidyl-prolyl cis-trans isomerase, FKBP-type, N-terminal NIY04_18335 IPR036944 Peptidyl-prolyl cis-trans isomerase, FKBP-type, N-terminal domain superfamily NIY04_18335 IPR001179 FKBP-type peptidyl-prolyl cis-trans isomerase domain NIY04_18340 IPR004268 Peptidoglycan biosynthesis protein MurJ NIY04_18345 IPR036505 N-acetylmuramoyl-L-alanine amidase/PGRP domain superfamily NIY04_18345 IPR002502 N-acetylmuramoyl-L-alanine amidase domain NIY04_18350 IPR027277 Nicotinate-nucleotide pyrophosphorylase/Putative pyrophosphorylase ModD NIY04_18350 IPR022412 Quinolinate phosphoribosyl transferase, N-terminal NIY04_18350 IPR002638 Quinolinate phosphoribosyl transferase, C-terminal NIY04_18350 IPR037128 Quinolinate phosphoribosyl transferase, N-terminal domain superfamily NIY04_18350 IPR036068 Nicotinate phosphoribosyltransferase-like, C-terminal NIY04_18350 IPR004393 Nicotinate-nucleotide pyrophosphorylase NIY04_18350 IPR013785 Aldolase-type TIM barrel NIY04_18360 IPR007312 Phosphoesterase NIY04_18360 IPR017767 Bacterial phospholipase C, phosphocholine-specific NIY04_18360 IPR017850 Alkaline-phosphatase-like, core domain superfamily NIY04_18360 IPR008475 Bacterial phospholipase C, C-terminal domain NIY04_18360 IPR006311 Twin-arginine translocation pathway, signal sequence NIY04_18370 IPR001247 Exoribonuclease, phosphorolytic domain 1 NIY04_18370 IPR015847 Exoribonuclease, phosphorolytic domain 2 NIY04_18370 IPR036345 Exoribonuclease, PH domain 2 superfamily NIY04_18370 IPR027408 PNPase/RNase PH domain superfamily NIY04_18370 IPR020568 Ribosomal protein S5 domain 2-type fold NIY04_18370 IPR018336 Ribonuclease PH, conserved site NIY04_18370 IPR002381 Ribonuclease PH, bacterial-type NIY04_18375 IPR005804 Fatty acid desaturase domain NIY04_18380 IPR017938 Riboflavin synthase-like beta-barrel NIY04_18380 IPR001433 Oxidoreductase FAD/NAD(P)-binding NIY04_18380 IPR039261 Ferredoxin-NADP reductase (FNR), nucleotide-binding domain NIY04_18385 IPR001647 DNA-binding HTH domain, TetR-type NIY04_18385 IPR009057 Homeobox-like domain superfamily NIY04_18385 IPR023764 Transcriptional repressor HTH, FabR NIY04_18390 IPR001647 DNA-binding HTH domain, TetR-type NIY04_18390 IPR009057 Homeobox-like domain superfamily NIY04_18390 IPR023772 DNA-binding HTH domain, TetR-type, conserved site NIY04_18390 IPR013571 Transcription regulator QacR, C-terminal NIY04_18390 IPR036271 Tetracyclin repressor-like, C-terminal domain superfamily NIY04_18395 IPR013766 Thioredoxin domain NIY04_18395 IPR017937 Thioredoxin, conserved site NIY04_18395 IPR036249 Thioredoxin-like superfamily NIY04_18395 IPR023205 Thiol:disulphide interchange protein DsbA/DsbL NIY04_18395 IPR001853 DSBA-like thioredoxin domain NIY04_18400 IPR010233 Ubiquinone biosynthesis O-methyltransferase NIY04_18400 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase NIY04_18405 IPR006439 HAD hydrolase, subfamily IA NIY04_18405 IPR023214 HAD superfamily NIY04_18405 IPR023198 Phosphoglycolate phosphatase-like, domain 2 NIY04_18405 IPR006346 2-phosphoglycolate phosphatase-like, prokaryotic NIY04_18405 IPR036412 HAD-like superfamily NIY04_18405 IPR041492 Haloacid dehalogenase-like hydrolase NIY04_18410 IPR002347 Short-chain dehydrogenase/reductase SDR NIY04_18410 IPR020904 Short-chain dehydrogenase/reductase, conserved site NIY04_18410 IPR036291 NAD(P)-binding domain superfamily NIY04_18425 IPR010167 Amino-acid N-acetyltransferase NIY04_18425 IPR033719 N-acetylglutamate synthase, kinase-like domain NIY04_18425 IPR000182 GNAT domain NIY04_18425 IPR001048 Aspartate/glutamate/uridylate kinase NIY04_18425 IPR016181 Acyl-CoA N-acyltransferase NIY04_18425 IPR036393 Acetylglutamate kinase-like superfamily NIY04_18430 IPR015168 SsuA/THI5-like NIY04_18430 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF NIY04_18430 IPR010067 Aliphatic sulfonates-binding protein NIY04_18435 IPR015168 SsuA/THI5-like NIY04_18435 IPR010067 Aliphatic sulfonates-binding protein NIY04_18435 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF NIY04_18440 IPR036661 Luciferase-like domain superfamily NIY04_18440 IPR011251 Luciferase-like domain NIY04_18440 IPR019911 Alkanesulphonate monooxygenase, FMN-dependent NIY04_18445 IPR000515 ABC transporter type 1, transmembrane domain MetI-like NIY04_18445 IPR035906 MetI-like superfamily NIY04_18450 IPR003593 AAA+ ATPase domain NIY04_18450 IPR003439 ABC transporter-like NIY04_18450 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIY04_18450 IPR017875 Aliphatic sulfonates import ATP-binding protein SsuB NIY04_18455 IPR009057 Homeobox-like domain superfamily NIY04_18455 IPR001647 DNA-binding HTH domain, TetR-type NIY04_18455 IPR036271 Tetracyclin repressor-like, C-terminal domain superfamily NIY04_18455 IPR019915 Transcription regulator, pyrimidine utilisation, RutR NIY04_18455 IPR013573 Transcription regulator YcdC, C-terminal NIY04_18460 IPR010049 MTA/SAH nucleosidase NIY04_18460 IPR035994 Nucleoside phosphorylase superfamily NIY04_18460 IPR000845 Nucleoside phosphorylase domain NIY04_18470 IPR023468 Riboflavin kinase NIY04_18470 IPR015865 Riboflavin kinase domain, bacterial/eukaryotic NIY04_18470 IPR023465 Riboflavin kinase domain superfamily NIY04_18470 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold NIY04_18470 IPR015864 FAD synthetase NIY04_18470 IPR002606 Riboflavin kinase, bacterial NIY04_18475 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold NIY04_18475 IPR013155 Methionyl/Valyl/Leucyl/Isoleucyl-tRNA synthetase, anticodon-binding NIY04_18475 IPR009008 Valyl/Leucyl/Isoleucyl-tRNA synthetase, editing domain NIY04_18475 IPR002301 Isoleucine-tRNA ligase NIY04_18475 IPR033708 Isoleucyl tRNA synthetase type 1, anticodon-binding domain NIY04_18475 IPR002300 Aminoacyl-tRNA synthetase, class Ia NIY04_18475 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site NIY04_18475 IPR010663 Zinc finger, FPG/IleRS-type NIY04_18475 IPR009080 Aminoacyl-tRNA synthetase, class Ia, anticodon-binding NIY04_18475 IPR023585 Isoleucine-tRNA ligase, type 1 NIY04_18480 IPR001872 Peptidase A8, signal peptidase II NIY04_18485 IPR001179 FKBP-type peptidyl-prolyl cis-trans isomerase domain NIY04_18525 IPR029000 Cyclophilin-like domain superfamily NIY04_18525 IPR020892 Cyclophilin-type peptidyl-prolyl cis-trans isomerase, conserved site NIY04_18525 IPR002130 Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain NIY04_18530 IPR013094 Alpha/beta hydrolase fold-3 NIY04_18530 IPR029058 Alpha/Beta hydrolase fold NIY04_18550 IPR036390 Winged helix DNA-binding domain superfamily NIY04_18550 IPR036388 Winged helix-like DNA-binding domain superfamily NIY04_18550 IPR000847 Transcription regulator HTH, LysR NIY04_18550 IPR005119 LysR, substrate-binding NIY04_18555 IPR009012 GrpE nucleotide exchange factor, head NIY04_18555 IPR013805 GrpE nucleotide exchange factor, coiled-coil NIY04_18555 IPR000740 GrpE nucleotide exchange factor NIY04_18560 IPR013126 Heat shock protein 70 family NIY04_18560 IPR029047 Heat shock protein 70kD, peptide-binding domain superfamily NIY04_18560 IPR029048 Heat shock protein 70kD, C-terminal domain superfamily NIY04_18560 IPR018181 Heat shock protein 70, conserved site NIY04_18560 IPR012725 Chaperone DnaK NIY04_18580 IPR031304 Transglycosylase SLT domain 2 NIY04_18580 IPR023346 Lysozyme-like domain superfamily NIY04_18580 IPR011757 Lytic transglycosylase MltB NIY04_18585 IPR003135 ATP-grasp fold, ATP-dependent carboxylate-amine ligase-type NIY04_18585 IPR011054 Rudiment single hybrid motif NIY04_18585 IPR040686 Phosphoribosylaminoimidazole carboxylase, C-terminal domain NIY04_18585 IPR011761 ATP-grasp fold NIY04_18585 IPR005875 Phosphoribosylaminoimidazole carboxylase, ATPase subunit NIY04_18585 IPR013815 ATP-grasp fold, subdomain 1 NIY04_18585 IPR016185 Pre-ATP-grasp domain superfamily NIY04_18590 IPR035893 PurE domain superfamily NIY04_18590 IPR024694 PurE, prokaryotic type NIY04_18590 IPR000031 PurE domain NIY04_18590 IPR033747 Class I PurE NIY04_18600 IPR036565 Mur-like, catalytic domain superfamily NIY04_18600 IPR005757 Murein peptide ligase NIY04_18600 IPR036615 Mur ligase, C-terminal domain superfamily NIY04_18600 IPR013221 Mur ligase, central NIY04_18600 IPR000713 Mur ligase, N-terminal catalytic domain NIY04_18600 IPR004101 Mur ligase, C-terminal NIY04_18610 IPR036938 Phosphatidic acid phosphatase type 2/haloperoxidase superfamily NIY04_18610 IPR000326 Phosphatidic acid phosphatase type 2/haloperoxidase NIY04_18610 IPR033879 Undecaprenyl-diphosphatase NIY04_18615 IPR005496 Integral membrane protein TerC NIY04_18615 IPR022369 Integral membrane protein TerC, riboswitch-linked NIY04_18625 IPR005494 Glutathionylspermidine synthase, pre-ATP-grasp-like domain NIY04_18625 IPR016185 Pre-ATP-grasp domain superfamily NIY04_18630 IPR015881 Aromatic-ring-hydroxylating dioxygenase, 2Fe-2S-binding site NIY04_18630 IPR017941 Rieske [2Fe-2S] iron-sulphur domain NIY04_18630 IPR036922 Rieske [2Fe-2S] iron-sulphur domain superfamily NIY04_18635 IPR032466 Metal-dependent hydrolase NIY04_18635 IPR011059 Metal-dependent hydrolase, composite domain superfamily NIY04_18635 IPR006680 Amidohydrolase-related NIY04_18635 IPR014311 Guanine deaminase NIY04_18640 IPR005904 Hypoxanthine phosphoribosyl transferase NIY04_18640 IPR029057 Phosphoribosyltransferase-like NIY04_18640 IPR000836 Phosphoribosyltransferase domain NIY04_18650 IPR017937 Thioredoxin, conserved site NIY04_18650 IPR036249 Thioredoxin-like superfamily NIY04_18650 IPR033954 Disulphide bond isomerase, DsbC/G NIY04_18650 IPR018950 Disulphide bond isomerase, DsbC/G, N-terminal NIY04_18650 IPR009094 Disulphide bond isomerase DsbC/G, N-terminal domain superfamily NIY04_18650 IPR012336 Thioredoxin-like fold NIY04_18655 IPR002524 Cation efflux protein NIY04_18655 IPR027470 Cation efflux protein, cytoplasmic domain NIY04_18655 IPR036837 Cation efflux protein, cytoplasmic domain superfamily NIY04_18655 IPR027469 Cation efflux transmembrane domain superfamily NIY04_18660 IPR003735 Metal-sensitive transcriptional repressor NIY04_18660 IPR038390 Metal-sensitive transcriptional repressor superfamily NIY04_18665 IPR027417 P-loop containing nucleoside triphosphate hydrolase NIY04_18665 IPR005225 Small GTP-binding protein domain NIY04_18665 IPR027266 GTP-binding protein TrmE/Glycine cleavage system T protein, domain 1 NIY04_18665 IPR025867 MnmE, helical domain NIY04_18665 IPR031168 TrmE-type guanine nucleotide-binding domain NIY04_18665 IPR004520 tRNA modification GTPase MnmE NIY04_18665 IPR006073 GTP binding domain NIY04_18665 IPR018948 GTP-binding protein TrmE, N-terminal NIY04_18665 IPR027368 tRNA modification GTPase MnmE domain 2 NIY04_18670 IPR038221 YidC, periplasmic domain superfamily NIY04_18670 IPR001708 Membrane insertase YidC/ALB3/OXA1/COX18 NIY04_18670 IPR038210 Membrane insertase YidC, periplasmic domain NIY04_18670 IPR028055 Membrane insertase YidC/Oxa1, C-terminal NIY04_18670 IPR019998 Membrane insertase YidC NIY04_18670 IPR028053 Membrane insertase YidC, N-terminal NIY04_18675 IPR002696 Putative membrane protein insertion efficiency factor NIY04_18680 IPR020568 Ribosomal protein S5 domain 2-type fold NIY04_18680 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup NIY04_18680 IPR000100 Ribonuclease P NIY04_18680 IPR020539 Ribonuclease P, conserved site NIY04_18685 IPR000271 Ribosomal protein L34 NIY04_18685 IPR020939 Ribosomal protein L34, conserved site