locus-tag class description NIY04_00005 PF00308 Bacterial dnaA protein NIY04_00005 PF08299 Bacterial dnaA protein helix-turn-helix NIY04_00005 PF11638 DnaA N-terminal domain NIY04_00010 PF00712 DNA polymerase III beta subunit, N-terminal domain NIY04_00010 PF02767 DNA polymerase III beta subunit, central domain NIY04_00010 PF02768 DNA polymerase III beta subunit, C-terminal domain NIY04_00015 PF02463 RecF/RecN/SMC N terminal domain NIY04_00020 PF01751 Toprim domain NIY04_00020 PF18053 DNA gyrase B subunit insert domain NIY04_00020 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NIY04_00020 PF00204 DNA gyrase B NIY04_00020 PF00986 DNA gyrase B subunit, carboxyl terminus NIY04_00030 PF09335 SNARE associated Golgi protein NIY04_00035 PF00005 ABC transporter NIY04_00035 PF12848 ABC transporter NIY04_00055 PF01521 Iron-sulphur cluster biosynthesis NIY04_00060 PF00561 alpha/beta hydrolase fold NIY04_00065 PF03702 Anhydro-N-acetylmuramic acid kinase NIY04_00070 PF00579 tRNA synthetases class I (W and Y) NIY04_00110 PF00209 Sodium:neurotransmitter symporter family NIY04_00120 PF01029 NusB family NIY04_00120 PF01189 16S rRNA methyltransferase RsmB/F NIY04_00125 PF02911 Formyl transferase, C-terminal domain NIY04_00125 PF00551 Formyl transferase NIY04_00130 PF00920 Dehydratase family NIY04_00145 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NIY04_00145 PF03466 LysR substrate binding domain NIY04_00150 PF00860 Permease family NIY04_00155 PF00311 Phosphoenolpyruvate carboxylase NIY04_00160 PF00440 Bacterial regulatory proteins, tetR family NIY04_00160 PF08361 MAATS-type transcriptional repressor, C-terminal region NIY04_00165 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion NIY04_00170 PF00873 AcrB/AcrD/AcrF family NIY04_00180 PF00684 DnaJ central domain NIY04_00180 PF00226 DnaJ domain NIY04_00180 PF01556 DnaJ C terminal domain NIY04_00190 PF01113 Dihydrodipicolinate reductase, N-terminus NIY04_00190 PF05173 Dihydrodipicolinate reductase, C-terminus NIY04_00200 PF07690 Major Facilitator Superfamily NIY04_00205 PF00248 Aldo/keto reductase family NIY04_00210 PF03466 LysR substrate binding domain NIY04_00210 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NIY04_00225 PF00155 Aminotransferase class I and II NIY04_00225 PF00392 Bacterial regulatory proteins, gntR family NIY04_00230 PF08240 Alcohol dehydrogenase GroES-like domain NIY04_00230 PF00107 Zinc-binding dehydrogenase NIY04_00235 PF03352 Methyladenine glycosylase NIY04_00250 PF10576 Iron-sulfur binding domain of endonuclease III NIY04_00250 PF14815 NUDIX domain NIY04_00250 PF00730 HhH-GPD superfamily base excision DNA repair protein NIY04_00250 PF00633 Helix-hairpin-helix motif NIY04_00265 PF07043 Protein of unknown function (DUF1328) NIY04_00270 PF03692 Putative zinc- or iron-chelating domain NIY04_00275 PF07995 Glucose / Sorbosone dehydrogenase NIY04_00280 PF16193 AAA C-terminal domain NIY04_00280 PF00004 ATPase family associated with various cellular activities (AAA) NIY04_00280 PF12002 MgsA AAA+ ATPase C terminal NIY04_00285 PF01226 Formate/nitrite transporter NIY04_00295 PF01259 SAICAR synthetase NIY04_00305 PF00701 Dihydrodipicolinate synthetase family NIY04_00310 PF00857 Isochorismatase family NIY04_00315 PF01758 Sodium Bile acid symporter family NIY04_00320 PF01554 MatE NIY04_00325 PF04463 Protein of unknown function (DUF523) NIY04_00330 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily NIY04_00340 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily NIY04_00345 PF14497 Glutathione S-transferase, C-terminal domain NIY04_00345 PF02798 Glutathione S-transferase, N-terminal domain NIY04_00355 PF00324 Amino acid permease NIY04_00365 PF07683 Cobalamin synthesis protein cobW C-terminal domain NIY04_00365 PF02492 CobW/HypB/UreG, nucleotide-binding domain NIY04_00375 PF07702 UTRA domain NIY04_00375 PF00392 Bacterial regulatory proteins, gntR family NIY04_00380 PF05962 HutD NIY04_00385 PF17391 Urocanase N-terminal domain NIY04_00385 PF17392 Urocanase C-terminal domain NIY04_00385 PF01175 Urocanase Rossmann-like domain NIY04_00390 PF00221 Aromatic amino acid lyase NIY04_00395 PF00324 Amino acid permease NIY04_00400 PF01979 Amidohydrolase family NIY04_00405 PF00491 Arginase family NIY04_00420 PF01177 Asp/Glu/Hydantoin racemase NIY04_00425 PF01810 LysE type translocator NIY04_00440 PF01380 SIS domain NIY04_00445 PF00132 Bacterial transferase hexapeptide (six repeats) NIY04_00445 PF14602 Hexapeptide repeat of succinyl-transferase NIY04_00445 PF12804 MobA-like NTP transferase domain NIY04_00450 PF04608 Phosphatidylglycerophosphatase A NIY04_00455 PF02769 AIR synthase related protein, C-terminal domain NIY04_00455 PF00586 AIR synthase related protein, N-terminal domain NIY04_00460 PF01029 NusB family NIY04_00465 PF00885 6,7-dimethyl-8-ribityllumazine synthase NIY04_00470 PF00925 GTP cyclohydrolase II NIY04_00470 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase NIY04_00495 PF02580 D-Tyr-tRNA(Tyr) deacylase NIY04_00500 PF00199 Catalase NIY04_00500 PF06628 Catalase-related immune-responsive NIY04_00510 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family NIY04_00510 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain NIY04_00515 PF00581 Rhodanese-like domain NIY04_00520 PF02666 Phosphatidylserine decarboxylase NIY04_00530 PF11808 Phosphate regulon sensor protein PhoR NIY04_00530 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NIY04_00530 PF00512 His Kinase A (phospho-acceptor) domain NIY04_00530 PF00989 PAS fold NIY04_00535 PF00486 Transcriptional regulatory protein, C terminal NIY04_00535 PF00072 Response regulator receiver domain NIY04_00545 PF00106 short chain dehydrogenase NIY04_00550 PF01554 MatE NIY04_00555 PF00155 Aminotransferase class I and II NIY04_00560 PF04286 Protein of unknown function (DUF445) NIY04_00575 PF04262 Glutamate-cysteine ligase NIY04_00580 PF02600 Disulfide bond formation protein DsbB NIY04_00585 PF13296 Putative type VI secretion system Rhs element Vgr NIY04_00585 PF04717 Type VI secretion system, phage-baseplate injector NIY04_00585 PF10106 Uncharacterized protein conserved in bacteria (DUF2345) NIY04_00590 PF01476 LysM domain NIY04_00590 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase NIY04_00625 PF05728 Uncharacterised protein family (UPF0227) NIY04_00630 PF00986 DNA gyrase B subunit, carboxyl terminus NIY04_00630 PF01751 Toprim domain NIY04_00630 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NIY04_00630 PF00204 DNA gyrase B NIY04_00635 PF04115 Ureidoglycolate lyase NIY04_00640 PF03561 Allantoicase repeat NIY04_00645 PF01494 FAD binding domain NIY04_00655 PF00860 Permease family NIY04_00660 PF00576 HIUase/Transthyretin family NIY04_00690 PF11412 Disulphide bond corrector protein DsbC NIY04_00690 PF02683 Cytochrome C biogenesis protein transmembrane region NIY04_00695 PF07694 5TMR of 5TMR-LYT NIY04_00695 PF00990 Diguanylate cyclase, GGDEF domain NIY04_00700 PF07859 alpha/beta hydrolase fold NIY04_00710 PF03960 ArsC family NIY04_00715 PF03372 Endonuclease/Exonuclease/phosphatase family NIY04_00720 PF00156 Phosphoribosyl transferase domain NIY04_00730 PF07715 TonB-dependent Receptor Plug Domain NIY04_00730 PF00593 TonB dependent receptor NIY04_00740 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain NIY04_00740 PF02951 Prokaryotic glutathione synthetase, N-terminal domain NIY04_00745 PF03033 Glycosyltransferase family 28 N-terminal domain NIY04_00745 PF04101 Glycosyltransferase family 28 C-terminal domain NIY04_00750 PF01225 Mur ligase family, catalytic domain NIY04_00750 PF02875 Mur ligase family, glutamate ligase domain NIY04_00750 PF08245 Mur ligase middle domain NIY04_00755 PF01820 D-ala D-ala ligase N-terminus NIY04_00755 PF07478 D-ala D-ala ligase C-terminus NIY04_00760 PF03799 Cell division protein FtsQ NIY04_00760 PF08478 POTRA domain, FtsQ-type NIY04_00765 PF02491 SHS2 domain inserted in FTSA NIY04_00770 PF00091 Tubulin/FtsZ family, GTPase domain NIY04_00770 PF12327 FtsZ family, C-terminal domain NIY04_00775 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase NIY04_00785 PF01551 Peptidase family M23 NIY04_00790 PF17831 Pyruvate dehydrogenase E1 component middle domain NIY04_00790 PF00456 Transketolase, thiamine diphosphate binding domain NIY04_00795 PF00364 Biotin-requiring enzyme NIY04_00795 PF02817 e3 binding domain NIY04_00795 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) NIY04_00805 PF01169 Uncharacterized protein family UPF0016 NIY04_00810 PF00593 TonB dependent receptor NIY04_00810 PF07715 TonB-dependent Receptor Plug Domain NIY04_00815 PF01613 Flavin reductase like domain NIY04_00815 PF00258 Flavodoxin NIY04_00820 PF03692 Putative zinc- or iron-chelating domain NIY04_00825 PF00478 IMP dehydrogenase / GMP reductase domain NIY04_00825 PF00571 CBS domain NIY04_00830 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain NIY04_00830 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III NIY04_00830 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II NIY04_00830 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I NIY04_00835 PF01243 Pyridoxamine 5'-phosphate oxidase NIY04_00835 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region NIY04_00840 PF17768 RecJ OB domain NIY04_00840 PF02272 DHHA1 domain NIY04_00840 PF01368 DHH family NIY04_00860 PF00724 NADH:flavin oxidoreductase / NADH oxidase family NIY04_00865 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) NIY04_00875 PF00924 Mechanosensitive ion channel NIY04_00885 PF13193 AMP-binding enzyme C-terminal domain NIY04_00885 PF00501 AMP-binding enzyme NIY04_00885 PF16177 Acetyl-coenzyme A synthetase N-terminus NIY04_00890 PF00857 Isochorismatase family NIY04_00895 PF01037 Lrp/AsnC ligand binding domain NIY04_00900 PF00296 Luciferase-like monooxygenase NIY04_00905 PF03358 NADPH-dependent FMN reductase NIY04_00910 PF00072 Response regulator receiver domain NIY04_00910 PF00196 Bacterial regulatory proteins, luxR family NIY04_00920 PF00672 HAMP domain NIY04_00920 PF00072 Response regulator receiver domain NIY04_00920 PF01627 Hpt domain NIY04_00920 PF00512 His Kinase A (phospho-acceptor) domain NIY04_00920 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NIY04_00925 PF04341 Protein of unknown function, DUF485 NIY04_00930 PF00474 Sodium:solute symporter family NIY04_00940 PF02028 BCCT, betaine/carnitine/choline family transporter NIY04_00950 PF00990 Diguanylate cyclase, GGDEF domain NIY04_00955 PF00005 ABC transporter NIY04_00955 PF17755 UvrA DNA-binding domain NIY04_00955 PF17760 UvrA interaction domain NIY04_00960 PF16925 Tetracyclin repressor-like, C-terminal domain NIY04_00960 PF00440 Bacterial regulatory proteins, tetR family NIY04_00965 PF00107 Zinc-binding dehydrogenase NIY04_00965 PF08240 Alcohol dehydrogenase GroES-like domain NIY04_00975 PF06942 GlpM protein NIY04_00980 PF03070 TENA/THI-4/PQQC family NIY04_00980 PF02581 Thiamine monophosphate synthase NIY04_00980 PF08543 Phosphomethylpyrimidine kinase NIY04_00990 PF07690 Major Facilitator Superfamily NIY04_00995 PF00436 Single-strand binding protein family NIY04_01005 PF03591 AzlC protein NIY04_01015 PF00324 Amino acid permease NIY04_01020 PF00155 Aminotransferase class I and II NIY04_01020 PF00392 Bacterial regulatory proteins, gntR family NIY04_01025 PF00202 Aminotransferase class-III NIY04_01030 PF00171 Aldehyde dehydrogenase family NIY04_01035 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NIY04_01040 PF00857 Isochorismatase family NIY04_01045 PF02678 Pirin NIY04_01045 PF05726 Pirin C-terminal cupin domain NIY04_01050 PF01593 Flavin containing amine oxidoreductase NIY04_01080 PF07690 Major Facilitator Superfamily NIY04_01085 PF03466 LysR substrate binding domain NIY04_01085 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NIY04_01110 PF02311 AraC-like ligand binding domain NIY04_01110 PF12833 Helix-turn-helix domain NIY04_01130 PF01638 HxlR-like helix-turn-helix NIY04_01160 PF01638 HxlR-like helix-turn-helix NIY04_01165 PF02525 Flavodoxin-like fold NIY04_01190 PF12833 Helix-turn-helix domain NIY04_01200 PF02705 K+ potassium transporter NIY04_01225 PF00230 Major intrinsic protein NIY04_01240 PF00977 Histidine biosynthesis protein NIY04_01245 PF01636 Phosphotransferase enzyme family NIY04_01260 PF03992 Antibiotic biosynthesis monooxygenase NIY04_01275 PF00977 Histidine biosynthesis protein NIY04_01290 PF00117 Glutamine amidotransferase class-I NIY04_01295 PF00475 Imidazoleglycerol-phosphate dehydratase NIY04_01315 PF00583 Acetyltransferase (GNAT) family NIY04_01320 PF02550 Acetyl-CoA hydrolase/transferase N-terminal domain NIY04_01320 PF13336 Acetyl-CoA hydrolase/transferase C-terminal domain NIY04_01330 PF00512 His Kinase A (phospho-acceptor) domain NIY04_01330 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NIY04_01330 PF00672 HAMP domain NIY04_01335 PF00072 Response regulator receiver domain NIY04_01335 PF00486 Transcriptional regulatory protein, C terminal NIY04_01340 PF17674 HHH domain NIY04_01340 PF09371 Tex-like protein N-terminal domain NIY04_01340 PF16921 Tex protein YqgF-like domain NIY04_01340 PF00575 S1 RNA binding domain NIY04_01345 PF01740 STAS domain NIY04_01345 PF00916 Sulfate permease family NIY04_01350 PF00106 short chain dehydrogenase NIY04_01365 PF01965 DJ-1/PfpI family NIY04_01370 PF01053 Cys/Met metabolism PLP-dependent enzyme NIY04_01375 PF12848 ABC transporter NIY04_01375 PF00005 ABC transporter NIY04_01400 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion NIY04_01400 PF00529 HlyD membrane-fusion protein of T1SS NIY04_01405 PF00873 AcrB/AcrD/AcrF family NIY04_01410 PF01545 Cation efflux family NIY04_01440 PF00324 Amino acid permease NIY04_01455 PF00749 tRNA synthetases class I (E and Q), catalytic domain NIY04_01470 PF01795 MraW methylase family NIY04_01480 PF03717 Penicillin-binding Protein dimerisation domain NIY04_01480 PF00905 Penicillin binding protein transpeptidase domain NIY04_01485 PF01225 Mur ligase family, catalytic domain NIY04_01485 PF02875 Mur ligase family, glutamate ligase domain NIY04_01485 PF08245 Mur ligase middle domain NIY04_01490 PF02875 Mur ligase family, glutamate ligase domain NIY04_01490 PF08245 Mur ligase middle domain NIY04_01490 PF01225 Mur ligase family, catalytic domain NIY04_01495 PF00953 Glycosyl transferase family 4 NIY04_01505 PF13847 Methyltransferase domain NIY04_01510 PF17092 Penicillin-binding protein OB-like domain NIY04_01510 PF00912 Transglycosylase NIY04_01510 PF00905 Penicillin binding protein transpeptidase domain NIY04_01515 PF11104 Type IV pilus assembly protein PilM; NIY04_01520 PF05137 Fimbrial assembly protein (PilN) NIY04_01525 PF04350 Pilus assembly protein, PilO NIY04_01535 PF07660 Secretin and TonB N terminus short domain NIY04_01535 PF03958 Bacterial type II/III secretion system short domain NIY04_01535 PF00263 Bacterial type II and III secretion system protein NIY04_01535 PF11741 AMIN domain NIY04_01540 PF01202 Shikimate kinase NIY04_01545 PF01761 3-dehydroquinate synthase NIY04_01555 PF01645 Conserved region in glutamate synthase NIY04_01555 PF00310 Glutamine amidotransferases class-II NIY04_01555 PF01493 GXGXG motif NIY04_01555 PF04898 Glutamate synthase central domain NIY04_01560 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster NIY04_01560 PF07992 Pyridine nucleotide-disulphide oxidoreductase NIY04_01570 PF04011 LemA family NIY04_01575 PF04536 TPM domain NIY04_01585 PF00114 Pilin (bacterial filament) NIY04_01585 PF07963 Prokaryotic N-terminal methylation motif NIY04_01590 PF15864 Protein glycosylation ligase NIY04_01590 PF04932 O-Antigen ligase NIY04_01590 PF11846 Virulence factor membrane-bound polymerase, C-terminal NIY04_01595 PF00210 Ferritin-like domain NIY04_01600 PF04324 BFD-like [2Fe-2S] binding domain NIY04_01605 PF01042 Endoribonuclease L-PSP NIY04_01610 PF04607 Region found in RelA / SpoT proteins NIY04_01610 PF02824 TGS domain NIY04_01610 PF13291 ACT domain NIY04_01620 PF01192 RNA polymerase Rpb6 NIY04_01625 PF00625 Guanylate kinase NIY04_01630 PF02401 LytB protein NIY04_01670 PF00886 Ribosomal protein S16 NIY04_01675 PF01782 RimM N-terminal domain NIY04_01675 PF05239 PRC-barrel domain NIY04_01680 PF01746 tRNA (Guanine-1)-methyltransferase NIY04_01685 PF01245 Ribosomal protein L19 NIY04_01690 PF00561 alpha/beta hydrolase fold NIY04_01695 PF03280 Proteobacterial lipase chaperone protein NIY04_01700 PF16198 tRNA pseudouridylate synthase B C-terminal domain NIY04_01700 PF01509 TruB family pseudouridylate synthase (N terminal domain) NIY04_01700 PF09157 Pseudouridine synthase II TruB, C-terminal NIY04_01705 PF01925 Sulfite exporter TauE/SafE NIY04_01715 PF00892 EamA-like transporter family NIY04_01720 PF00892 EamA-like transporter family NIY04_01725 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain NIY04_01725 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain NIY04_01730 PF02913 FAD linked oxidases, C-terminal domain NIY04_01730 PF01565 FAD binding domain NIY04_01740 PF03992 Antibiotic biosynthesis monooxygenase NIY04_01745 PF02525 Flavodoxin-like fold NIY04_01755 PF07690 Major Facilitator Superfamily NIY04_01760 PF12805 FUSC-like inner membrane protein yccS NIY04_01765 PF00080 Copper/zinc superoxide dismutase (SODC) NIY04_01770 PF01594 AI-2E family transporter NIY04_01775 PF13614 AAA domain NIY04_01795 PF08241 Methyltransferase domain NIY04_01805 PF00324 Amino acid permease NIY04_01810 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase NIY04_01810 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain NIY04_01815 PF00202 Aminotransferase class-III NIY04_01820 PF04958 Arginine N-succinyltransferase beta subunit NIY04_01825 PF00171 Aldehyde dehydrogenase family NIY04_01830 PF04996 Succinylarginine dihydrolase NIY04_01835 PF04952 Succinylglutamate desuccinylase / Aspartoacylase family NIY04_01850 PF05922 Peptidase inhibitor I9 NIY04_01850 PF00082 Subtilase family NIY04_01865 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NIY04_01865 PF03466 LysR substrate binding domain NIY04_01870 PF00892 EamA-like transporter family NIY04_01890 PF02092 Glycyl-tRNA synthetase beta subunit NIY04_01890 PF05746 DALR anticodon binding domain NIY04_01895 PF02091 Glycyl-tRNA synthetase alpha subunit NIY04_01900 PF07690 Major Facilitator Superfamily NIY04_01915 PF00571 CBS domain NIY04_01920 PF04024 PspC domain NIY04_01930 PF12806 Acetyl-CoA dehydrogenase C-terminal like NIY04_01930 PF00441 Acyl-CoA dehydrogenase, C-terminal domain NIY04_01930 PF02771 Acyl-CoA dehydrogenase, N-terminal domain NIY04_01930 PF02770 Acyl-CoA dehydrogenase, middle domain NIY04_01940 PF18317 Shikimate 5'-dehydrogenase C-terminal domain NIY04_01940 PF01488 Shikimate / quinate 5-dehydrogenase NIY04_01940 PF08501 Shikimate dehydrogenase substrate binding domain NIY04_01945 PF01218 Coproporphyrinogen III oxidase NIY04_01950 PF00925 GTP cyclohydrolase II NIY04_01955 PF13292 1-deoxy-D-xylulose-5-phosphate synthase NIY04_01955 PF02779 Transketolase, pyrimidine binding domain NIY04_01955 PF02780 Transketolase, C-terminal domain NIY04_01960 PF00459 Inositol monophosphatase family NIY04_01965 PF00271 Helicase conserved C-terminal domain NIY04_01965 PF12343 Cold shock protein DEAD box A NIY04_01965 PF00270 DEAD/DEAH box helicase NIY04_01965 PF03880 DbpA RNA binding domain NIY04_01975 PF00005 ABC transporter NIY04_01980 PF02405 Permease MlaE NIY04_01990 PF05494 MlaC protein NIY04_02000 PF01544 CorA-like Mg2+ transporter protein NIY04_02005 PF03641 Possible lysine decarboxylase NIY04_02010 PF00293 NUDIX domain NIY04_02015 PF00156 Phosphoribosyl transferase domain NIY04_02020 PF00270 DEAD/DEAH box helicase NIY04_02020 PF17191 RecG wedge domain NIY04_02020 PF00271 Helicase conserved C-terminal domain NIY04_02035 PF01553 Acyltransferase NIY04_02045 PF00375 Sodium:dicarboxylate symporter family NIY04_02055 PF01926 50S ribosome-binding GTPase NIY04_02060 PF02082 Transcriptional regulator NIY04_02065 PF00970 Oxidoreductase FAD-binding domain NIY04_02065 PF00042 Globin NIY04_02065 PF00175 Oxidoreductase NAD-binding domain NIY04_02075 PF05872 Bacterial protein of unknown function (DUF853) NIY04_02080 PF01053 Cys/Met metabolism PLP-dependent enzyme NIY04_02085 PF00117 Glutamine amidotransferase class-I NIY04_02090 PF00338 Ribosomal protein S10p/S20e NIY04_02095 PF00297 Ribosomal protein L3 NIY04_02100 PF00573 Ribosomal protein L4/L1 family NIY04_02105 PF00276 Ribosomal protein L23 NIY04_02110 PF00181 Ribosomal Proteins L2, RNA binding domain NIY04_02110 PF03947 Ribosomal Proteins L2, C-terminal domain NIY04_02115 PF00203 Ribosomal protein S19 NIY04_02120 PF00237 Ribosomal protein L22p/L17e NIY04_02130 PF00252 Ribosomal protein L16p/L10e NIY04_02135 PF00831 Ribosomal L29 protein NIY04_02140 PF00366 Ribosomal protein S17 NIY04_02145 PF00238 Ribosomal protein L14p/L23e NIY04_02150 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 NIY04_02150 PF00467 KOW motif NIY04_02155 PF00673 ribosomal L5P family C-terminus NIY04_02155 PF00281 Ribosomal protein L5 NIY04_02160 PF00253 Ribosomal protein S14p/S29e NIY04_02165 PF00410 Ribosomal protein S8 NIY04_02170 PF00347 Ribosomal protein L6 NIY04_02175 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast NIY04_02180 PF00333 Ribosomal protein S5, N-terminal domain NIY04_02180 PF03719 Ribosomal protein S5, C-terminal domain NIY04_02185 PF00327 Ribosomal protein L30p/L7e NIY04_02190 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A NIY04_02195 PF00344 SecY translocase NIY04_02200 PF00444 Ribosomal protein L36 NIY04_02205 PF00416 Ribosomal protein S13/S18 NIY04_02210 PF00411 Ribosomal protein S11 NIY04_02215 PF00163 Ribosomal protein S4/S9 N-terminal domain NIY04_02215 PF01479 S4 domain NIY04_02220 PF01000 RNA polymerase Rpb3/RpoA insert domain NIY04_02220 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain NIY04_02220 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain NIY04_02225 PF01196 Ribosomal protein L17 NIY04_02230 PF00743 Flavin-binding monooxygenase-like NIY04_02235 PF02771 Acyl-CoA dehydrogenase, N-terminal domain NIY04_02235 PF00441 Acyl-CoA dehydrogenase, C-terminal domain NIY04_02235 PF02770 Acyl-CoA dehydrogenase, middle domain NIY04_02240 PF03937 Flavinator of succinate dehydrogenase NIY04_02270 PF09526 Probable metal-binding protein (DUF2387) NIY04_02275 PF01432 Peptidase family M3 NIY04_02280 PF17876 Cold shock domain NIY04_02280 PF08461 Ribonuclease R winged-helix domain NIY04_02280 PF08206 Ribonuclease B OB domain NIY04_02280 PF00773 RNB domain NIY04_02280 PF00575 S1 RNA binding domain NIY04_02325 PF01557 Fumarylacetoacetate (FAA) hydrolase family NIY04_02330 PF12833 Helix-turn-helix domain NIY04_02335 PF00892 EamA-like transporter family NIY04_02340 PF03631 Virulence factor BrkB NIY04_02345 PF03358 NADPH-dependent FMN reductase NIY04_02370 PF02130 Uncharacterized protein family UPF0054 NIY04_02375 PF02562 PhoH-like protein NIY04_02380 PF04055 Radical SAM superfamily NIY04_02380 PF01938 TRAM domain NIY04_02380 PF00919 Uncharacterized protein family UPF0004 NIY04_02385 PF01551 Peptidase family M23 NIY04_02385 PF10145 Phage-related minor tail protein NIY04_02385 PF01464 Transglycosylase SLT domain NIY04_02395 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain NIY04_02395 PF00056 lactate/malate dehydrogenase, NAD binding domain NIY04_02415 PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ NIY04_02420 PF01066 CDP-alcohol phosphatidyltransferase NIY04_02465 PF00441 Acyl-CoA dehydrogenase, C-terminal domain NIY04_02465 PF02770 Acyl-CoA dehydrogenase, middle domain NIY04_02465 PF02771 Acyl-CoA dehydrogenase, N-terminal domain NIY04_02470 PF17932 Tetracyclin repressor-like, C-terminal domain NIY04_02470 PF00440 Bacterial regulatory proteins, tetR family NIY04_02485 PF01039 Carboxyl transferase domain NIY04_02490 PF02771 Acyl-CoA dehydrogenase, N-terminal domain NIY04_02490 PF02770 Acyl-CoA dehydrogenase, middle domain NIY04_02490 PF00441 Acyl-CoA dehydrogenase, C-terminal domain NIY04_02500 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain NIY04_02500 PF00364 Biotin-requiring enzyme NIY04_02500 PF02785 Biotin carboxylase C-terminal domain NIY04_02500 PF00289 Biotin carboxylase, N-terminal domain NIY04_02510 PF04386 Stringent starvation protein B NIY04_02515 PF00043 Glutathione S-transferase, C-terminal domain NIY04_02515 PF13417 Glutathione S-transferase, N-terminal domain NIY04_02520 PF00380 Ribosomal protein S9/S16 NIY04_02525 PF00572 Ribosomal protein L13 NIY04_02530 PF04166 Pyridoxal phosphate biosynthetic protein PdxA NIY04_02535 PF00398 Ribosomal RNA adenine dimethylase NIY04_02540 PF00149 Calcineurin-like phosphoesterase NIY04_02560 PF16360 GTP-binding GTPase Middle Region NIY04_02560 PF01926 50S ribosome-binding GTPase NIY04_02560 PF13167 GTP-binding GTPase N-terminal NIY04_02570 PF13091 PLD-like domain NIY04_02580 PF01389 OmpA-like transmembrane domain NIY04_02580 PF00691 OmpA family NIY04_02585 PF17152 Periplasmic sensor domain NIY04_02585 PF00990 Diguanylate cyclase, GGDEF domain NIY04_02620 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain NIY04_02620 PF07992 Pyridine nucleotide-disulphide oxidoreductase NIY04_02630 PF00753 Metallo-beta-lactamase superfamily NIY04_02630 PF04273 Putative phosphatase (DUF442) NIY04_02635 PF00561 alpha/beta hydrolase fold NIY04_02640 PF00085 Thioredoxin NIY04_02645 PF03061 Thioesterase superfamily NIY04_02675 PF03887 YfbU domain NIY04_02750 PF04945 YHS domain NIY04_02755 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NIY04_02755 PF00512 His Kinase A (phospho-acceptor) domain NIY04_02755 PF00672 HAMP domain NIY04_02760 PF00072 Response regulator receiver domain NIY04_02760 PF00486 Transcriptional regulatory protein, C terminal NIY04_02770 PF07731 Multicopper oxidase NIY04_02770 PF00394 Multicopper oxidase NIY04_02770 PF07732 Multicopper oxidase NIY04_02790 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion NIY04_02795 PF00873 AcrB/AcrD/AcrF family NIY04_02805 PF07664 Ferrous iron transport protein B C terminus NIY04_02805 PF02421 Ferrous iron transport protein B NIY04_02805 PF07670 Nucleoside recognition NIY04_02820 PF13411 MerR HTH family regulatory protein NIY04_02845 PF00589 Phage integrase family NIY04_02845 PF13356 Arm DNA-binding domain NIY04_02850 PF04461 Protein of unknown function (DUF520) NIY04_02860 PF01266 FAD dependent oxidoreductase NIY04_02860 PF05430 S-adenosyl-L-methionine-dependent methyltransferase NIY04_02870 PF03795 YCII-related domain NIY04_02875 PF04279 Intracellular septation protein A NIY04_02880 PF02811 PHP domain NIY04_02885 PF01062 Bestrophin, RFP-TM, chloride channel NIY04_02890 PF04002 RadC-like JAB domain NIY04_02895 PF04127 DNA / pantothenate metabolism flavoprotein NIY04_02895 PF02441 Flavoprotein NIY04_02900 PF02355 Protein export membrane protein NIY04_02900 PF07549 SecD/SecF GG Motif NIY04_02905 PF13721 SecD export protein N-terminal TM region NIY04_02905 PF02355 Protein export membrane protein NIY04_02905 PF07549 SecD/SecF GG Motif NIY04_02910 PF02699 Preprotein translocase subunit NIY04_02915 PF01702 Queuine tRNA-ribosyltransferase NIY04_02930 PF02547 Queuosine biosynthesis protein NIY04_02940 PF13356 Arm DNA-binding domain NIY04_02940 PF00589 Phage integrase family NIY04_02950 PF01381 Helix-turn-helix NIY04_02960 PF01272 Transcription elongation factor, GreA/GreB, C-term NIY04_02960 PF03449 Transcription elongation factor, N-terminal NIY04_02975 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NIY04_02975 PF07689 KaiB domain NIY04_02975 PF00512 His Kinase A (phospho-acceptor) domain NIY04_02980 PF08335 GlnD PII-uridylyltransferase NIY04_02980 PF03710 Glutamate-ammonia ligase adenylyltransferase NIY04_02985 PF01063 Amino-transferase class IV NIY04_03000 PF01522 Polysaccharide deacetylase NIY04_03005 PF00535 Glycosyl transferase family 2 NIY04_03010 PF13439 Glycosyltransferase Family 4 NIY04_03010 PF00534 Glycosyl transferases group 1 NIY04_03025 PF02350 UDP-N-acetylglucosamine 2-epimerase NIY04_03040 PF02938 GAD domain NIY04_03040 PF00152 tRNA synthetases class II (D, K and N) NIY04_03040 PF01336 OB-fold nucleic acid binding domain NIY04_03050 PF07715 TonB-dependent Receptor Plug Domain NIY04_03050 PF00593 TonB dependent receptor NIY04_03070 PF06146 Phosphate-starvation-inducible E NIY04_03075 PF02770 Acyl-CoA dehydrogenase, middle domain NIY04_03075 PF02771 Acyl-CoA dehydrogenase, N-terminal domain NIY04_03075 PF00441 Acyl-CoA dehydrogenase, C-terminal domain NIY04_03075 PF12806 Acetyl-CoA dehydrogenase C-terminal like NIY04_03080 PF02770 Acyl-CoA dehydrogenase, middle domain NIY04_03080 PF02771 Acyl-CoA dehydrogenase, N-terminal domain NIY04_03080 PF00441 Acyl-CoA dehydrogenase, C-terminal domain NIY04_03080 PF12806 Acetyl-CoA dehydrogenase C-terminal like NIY04_03090 PF00672 HAMP domain NIY04_03090 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NIY04_03090 PF00512 His Kinase A (phospho-acceptor) domain NIY04_03095 PF00486 Transcriptional regulatory protein, C terminal NIY04_03095 PF00072 Response regulator receiver domain NIY04_03100 PF02696 Uncharacterized ACR, YdiU/UPF0061 family NIY04_03120 PF01923 Cobalamin adenosyltransferase NIY04_03125 PF07715 TonB-dependent Receptor Plug Domain NIY04_03125 PF00593 TonB dependent receptor NIY04_03130 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase NIY04_03135 PF00291 Pyridoxal-phosphate dependent enzyme NIY04_03160 PF00290 Tryptophan synthase alpha chain NIY04_03165 PF01039 Carboxyl transferase domain NIY04_03170 PF02875 Mur ligase family, glutamate ligase domain NIY04_03170 PF08245 Mur ligase middle domain NIY04_03185 PF00753 Metallo-beta-lactamase superfamily NIY04_03190 PF00578 AhpC/TSA family NIY04_03190 PF10417 C-terminal domain of 1-Cys peroxiredoxin NIY04_03195 PF01043 SecA preprotein cross-linking domain NIY04_03195 PF02810 SEC-C motif NIY04_03195 PF07516 SecA Wing and Scaffold domain NIY04_03195 PF07517 SecA DEAD-like domain NIY04_03205 PF07690 Major Facilitator Superfamily NIY04_03205 PF00083 Sugar (and other) transporter NIY04_03210 PF03006 Haemolysin-III related NIY04_03220 PF13673 Acetyltransferase (GNAT) domain NIY04_03235 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain NIY04_03235 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain NIY04_03235 PF00378 Enoyl-CoA hydratase/isomerase NIY04_03240 PF02803 Thiolase, C-terminal domain NIY04_03240 PF00108 Thiolase, N-terminal domain NIY04_03245 PF02311 AraC-like ligand binding domain NIY04_03245 PF12833 Helix-turn-helix domain NIY04_03250 PF02515 CoA-transferase family III NIY04_03255 PF04966 Carbohydrate-selective porin, OprB family NIY04_03260 PF01011 PQQ enzyme repeat NIY04_03265 PF01077 Nitrite and sulphite reductase 4Fe-4S domain NIY04_03265 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain NIY04_03275 PF00893 Small Multidrug Resistance protein NIY04_03285 PF02803 Thiolase, C-terminal domain NIY04_03285 PF00108 Thiolase, N-terminal domain NIY04_03295 PF13505 Outer membrane protein beta-barrel domain NIY04_03295 PF00691 OmpA family NIY04_03305 PF01139 tRNA-splicing ligase RtcB NIY04_03310 PF00324 Amino acid permease NIY04_03315 PF08468 Methyltransferase small domain N-terminal NIY04_03315 PF05175 Methyltransferase small domain NIY04_03320 PF00860 Permease family NIY04_03325 PF00679 Elongation factor G C-terminus NIY04_03325 PF00009 Elongation factor Tu GTP binding domain NIY04_03325 PF03144 Elongation factor Tu domain 2 NIY04_03330 PF01741 Large-conductance mechanosensitive channel, MscL NIY04_03345 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain NIY04_03345 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain NIY04_03345 PF06827 Zinc finger found in FPG and IleRS NIY04_03350 PF02245 Methylpurine-DNA glycosylase (MPG) NIY04_03355 PF07715 TonB-dependent Receptor Plug Domain NIY04_03355 PF00593 TonB dependent receptor NIY04_03360 PF00724 NADH:flavin oxidoreductase / NADH oxidase family NIY04_03375 PF10411 Disulfide bond isomerase protein N-terminus NIY04_03375 PF13098 Thioredoxin-like domain NIY04_03380 PF01571 Aminomethyltransferase folate-binding domain NIY04_03390 PF04343 Protein of unknown function, DUF488 NIY04_03395 PF03831 PhnA domain NIY04_03395 PF08274 PhnA Zinc-Ribbon NIY04_03400 PF07411 Domain of unknown function (DUF1508) NIY04_03405 PF04073 Aminoacyl-tRNA editing domain NIY04_03405 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) NIY04_03405 PF03129 Anticodon binding domain NIY04_03410 PF00873 AcrB/AcrD/AcrF family NIY04_03425 PF00072 Response regulator receiver domain NIY04_03430 PF00072 Response regulator receiver domain NIY04_03435 PF01584 CheW-like domain NIY04_03440 PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term NIY04_03440 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain NIY04_03445 PF00072 Response regulator receiver domain NIY04_03445 PF01584 CheW-like domain NIY04_03445 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NIY04_03445 PF01627 Hpt domain NIY04_03455 PF07687 Peptidase dimerisation domain NIY04_03455 PF01546 Peptidase family M20/M25/M40 NIY04_03460 PF08085 Entericidin EcnA/B family NIY04_03470 PF04304 Protein of unknown function (DUF454) NIY04_03475 PF17969 L,D-transpeptidase C-terminal domain NIY04_03475 PF03734 L,D-transpeptidase catalytic domain NIY04_03515 PF00667 FAD binding domain NIY04_03515 PF00258 Flavodoxin NIY04_03515 PF00175 Oxidoreductase NAD-binding domain NIY04_03525 PF12805 FUSC-like inner membrane protein yccS NIY04_03530 PF07690 Major Facilitator Superfamily NIY04_03535 PF00881 Nitroreductase family NIY04_03550 PF01235 Sodium:alanine symporter family NIY04_03555 PF01734 Patatin-like phospholipase NIY04_03560 PF00291 Pyridoxal-phosphate dependent enzyme NIY04_03560 PF13291 ACT domain NIY04_03565 PF05992 SbmA/BacA-like family NIY04_03570 PF01431 Peptidase family M13 NIY04_03570 PF05649 Peptidase family M13 NIY04_03595 PF02934 GatB/GatE catalytic domain NIY04_03595 PF02637 GatB domain NIY04_03600 PF01425 Amidase NIY04_03605 PF02686 Glu-tRNAGln amidotransferase C subunit NIY04_03615 PF04085 rod shape-determining protein MreC NIY04_03620 PF04093 rod shape-determining protein MreD NIY04_03625 PF02545 Maf-like protein NIY04_03630 PF10150 Ribonuclease E/G family NIY04_03630 PF00575 S1 RNA binding domain NIY04_03640 PF06974 Protein of unknown function (DUF1298) NIY04_03640 PF03007 Wax ester synthase-like Acyl-CoA acyltransferase domain NIY04_03645 PF01507 Phosphoadenosine phosphosulfate reductase family NIY04_03660 PF02525 Flavodoxin-like fold NIY04_03680 PF02673 Bacitracin resistance protein BacA NIY04_03685 PF06719 AraC-type transcriptional regulator N-terminus NIY04_03685 PF12833 Helix-turn-helix domain NIY04_03690 PF08240 Alcohol dehydrogenase GroES-like domain NIY04_03690 PF00550 Phosphopantetheine attachment site NIY04_03690 PF02801 Beta-ketoacyl synthase, C-terminal domain NIY04_03690 PF14765 Polyketide synthase dehydratase NIY04_03690 PF00109 Beta-ketoacyl synthase, N-terminal domain NIY04_03690 PF08659 KR domain NIY04_03690 PF00698 Acyl transferase domain NIY04_03690 PF09277 Erythronolide synthase, docking NIY04_03690 PF08990 Erythronolide synthase docking NIY04_03690 PF16197 Ketoacyl-synthetase C-terminal extension NIY04_03695 PF01965 DJ-1/PfpI family NIY04_03705 PF00324 Amino acid permease NIY04_03710 PF04303 PrpF protein NIY04_03715 PF00348 Polyprenyl synthetase NIY04_03720 PF04237 YjbR NIY04_03725 PF01145 SPFH domain / Band 7 family NIY04_03735 PF01734 Patatin-like phospholipase NIY04_03755 PF08019 Phosphoethanolamine transferase EptA/EptB NIY04_03755 PF00884 Sulfatase NIY04_03760 PF00072 Response regulator receiver domain NIY04_03760 PF00486 Transcriptional regulatory protein, C terminal NIY04_03765 PF08521 Two-component sensor kinase N-terminal NIY04_03765 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NIY04_03765 PF00512 His Kinase A (phospho-acceptor) domain NIY04_03775 PF00909 Ammonium Transporter Family NIY04_03780 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NIY04_03780 PF03466 LysR substrate binding domain NIY04_03800 PF08264 Anticodon-binding domain of tRNA NIY04_03800 PF10458 Valyl tRNA synthetase tRNA binding arm NIY04_03800 PF00133 tRNA synthetases class I (I, L, M and V) NIY04_03820 PF01906 Putative heavy-metal-binding NIY04_03825 PF01906 Putative heavy-metal-binding NIY04_03830 PF02321 Outer membrane efflux protein NIY04_03835 PF00873 AcrB/AcrD/AcrF family NIY04_03840 PF00529 HlyD membrane-fusion protein of T1SS NIY04_03840 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion NIY04_03845 PF01569 PAP2 superfamily NIY04_03855 PF00348 Polyprenyl synthetase NIY04_03865 PF00829 Ribosomal prokaryotic L21 protein NIY04_03870 PF01016 Ribosomal L27 protein NIY04_03875 PF03548 Outer membrane lipoprotein carrier protein LolA NIY04_03885 PF02403 Seryl-tRNA synthetase N-terminal domain NIY04_03885 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) NIY04_03890 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases NIY04_03890 PF10414 Sirohaem synthase dimerisation region NIY04_03890 PF14824 Sirohaem biosynthesis protein central NIY04_03895 PF00588 SpoU rRNA Methylase family NIY04_03900 PF01638 HxlR-like helix-turn-helix NIY04_03905 PF03358 NADPH-dependent FMN reductase NIY04_03910 PF13520 Amino acid permease NIY04_03915 PF00465 Iron-containing alcohol dehydrogenase NIY04_03925 PF03099 Biotin/lipoate A/B protein ligase family NIY04_03930 PF04359 Protein of unknown function (DUF493) NIY04_03935 PF04545 Sigma-70, region 4 NIY04_03935 PF04542 Sigma-70 region 2 NIY04_03935 PF00140 Sigma-70 factor, region 1.2 NIY04_03935 PF03979 Sigma-70 factor, region 1.1 NIY04_03935 PF04546 Sigma-70, non-essential region NIY04_03935 PF04539 Sigma-70 region 3 NIY04_03955 PF00581 Rhodanese-like domain NIY04_03955 PF17773 UPF0176 acylphosphatase like domain NIY04_03965 PF00285 Citrate synthase, C-terminal domain NIY04_03970 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit NIY04_03975 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit NIY04_03980 PF02910 Fumarate reductase flavoprotein C-term NIY04_03980 PF00890 FAD binding domain NIY04_03985 PF13085 2Fe-2S iron-sulfur cluster binding domain NIY04_04000 PF16870 2-oxoglutarate dehydrogenase C-terminal NIY04_04000 PF00676 Dehydrogenase E1 component NIY04_04000 PF16078 2-oxoglutarate dehydrogenase N-terminus NIY04_04000 PF02779 Transketolase, pyrimidine binding domain NIY04_04005 PF02817 e3 binding domain NIY04_04005 PF00364 Biotin-requiring enzyme NIY04_04005 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) NIY04_04010 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain NIY04_04010 PF07992 Pyridine nucleotide-disulphide oxidoreductase NIY04_04015 PF08442 ATP-grasp domain NIY04_04015 PF00549 CoA-ligase NIY04_04020 PF02629 CoA binding domain NIY04_04020 PF00549 CoA-ligase NIY04_04025 PF00579 tRNA synthetases class I (W and Y) NIY04_04030 PF05661 Protein of unknown function (DUF808) NIY04_04035 PF04228 Putative neutral zinc metallopeptidase NIY04_04040 PF00999 Sodium/hydrogen exchanger family NIY04_04055 PF09587 Bacterial capsule synthesis protein PGA_cap NIY04_04065 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain NIY04_04070 PF00582 Universal stress protein family NIY04_04075 PF00132 Bacterial transferase hexapeptide (six repeats) NIY04_04080 PF01042 Endoribonuclease L-PSP NIY04_04090 PF01272 Transcription elongation factor, GreA/GreB, C-term NIY04_04090 PF03449 Transcription elongation factor, N-terminal NIY04_04095 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain NIY04_04095 PF02142 MGS-like domain NIY04_04095 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain NIY04_04100 PF00117 Glutamine amidotransferase class-I NIY04_04100 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain NIY04_04115 PF01985 CRS1 / YhbY (CRM) domain NIY04_04120 PF01728 FtsJ-like methyltransferase NIY04_04125 PF17862 AAA+ lid domain NIY04_04125 PF01434 Peptidase family M41 NIY04_04125 PF00004 ATPase family associated with various cellular activities (AAA) NIY04_04125 PF06480 FtsH Extracellular NIY04_04130 PF00809 Pterin binding enzyme NIY04_04150 PF16655 PhoD-like phosphatase, N-terminal domain NIY04_04150 PF09423 PhoD-like phosphatase NIY04_04165 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain NIY04_04165 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain NIY04_04180 PF00083 Sugar (and other) transporter NIY04_04185 PF00370 FGGY family of carbohydrate kinases, N-terminal domain NIY04_04185 PF02782 FGGY family of carbohydrate kinases, C-terminal domain NIY04_04190 PF16901 C-terminal domain of alpha-glycerophosphate oxidase NIY04_04190 PF01266 FAD dependent oxidoreductase NIY04_04195 PF17297 Phosphoenolpyruvate carboxykinase N-terminal domain NIY04_04195 PF00821 Phosphoenolpyruvate carboxykinase C-terminal P-loop domain NIY04_04200 PF00781 Diacylglycerol kinase catalytic domain NIY04_04205 PF00149 Calcineurin-like phosphoesterase NIY04_04210 PF00166 Chaperonin 10 Kd subunit NIY04_04215 PF00118 TCP-1/cpn60 chaperonin family NIY04_04220 PF01219 Prokaryotic diacylglycerol kinase NIY04_04225 PF00753 Metallo-beta-lactamase superfamily NIY04_04230 PF03009 Glycerophosphoryl diester phosphodiesterase family NIY04_04235 PF00873 AcrB/AcrD/AcrF family NIY04_04245 PF01435 Peptidase family M48 NIY04_04250 PF01464 Transglycosylase SLT domain NIY04_04255 PF01171 PP-loop family NIY04_04265 PF00497 Bacterial extracellular solute-binding proteins, family 3 NIY04_04265 PF01464 Transglycosylase SLT domain NIY04_04270 PF01272 Transcription elongation factor, GreA/GreB, C-term NIY04_04270 PF03449 Transcription elongation factor, N-terminal NIY04_04285 PF00668 Condensation domain NIY04_04285 PF00975 Thioesterase domain NIY04_04285 PF00501 AMP-binding enzyme NIY04_04285 PF13193 AMP-binding enzyme C-terminal domain NIY04_04285 PF00550 Phosphopantetheine attachment site NIY04_04295 PF09857 Putative toxin of bacterial toxin-antitoxin pair NIY04_04355 PF00881 Nitroreductase family NIY04_04370 PF02595 Glycerate kinase family NIY04_04375 PF00384 Molybdopterin oxidoreductase NIY04_04380 PF02634 FdhD/NarQ family NIY04_04385 PF06803 Protein of unknown function (DUF1232) NIY04_04390 PF11890 Domain of unknown function (DUF3410) NIY04_04390 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain NIY04_04390 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain NIY04_04395 PF00152 tRNA synthetases class II (D, K and N) NIY04_04405 PF18073 Rubredoxin metal binding domain NIY04_04410 PF00324 Amino acid permease NIY04_04420 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain NIY04_04420 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain NIY04_04425 PF01678 Diaminopimelate epimerase NIY04_04430 PF01810 LysE type translocator NIY04_04435 PF02899 Phage integrase, N-terminal SAM-like domain NIY04_04435 PF00589 Phage integrase family NIY04_04440 PF01012 Electron transfer flavoprotein domain NIY04_04445 PF00766 Electron transfer flavoprotein FAD-binding domain NIY04_04445 PF01012 Electron transfer flavoprotein domain NIY04_04450 PF03989 DNA gyrase C-terminal domain, beta-propeller NIY04_04450 PF00521 DNA gyrase/topoisomerase IV, subunit A NIY04_04465 PF00535 Glycosyl transferase family 2 NIY04_04485 PF13533 Biotin-lipoyl like NIY04_04495 PF00266 Aminotransferase class-V NIY04_04510 PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 NIY04_04520 PF12704 MacB-like periplasmic core domain NIY04_04520 PF02687 FtsX-like permease family NIY04_04525 PF00005 ABC transporter NIY04_04530 PF13567 Domain of unknown function (DUF4131) NIY04_04530 PF03772 Competence protein NIY04_04530 PF00753 Metallo-beta-lactamase superfamily NIY04_04540 PF01343 Peptidase family S49 NIY04_04540 PF06965 Na+/H+ antiporter 1 NIY04_04545 PF12697 Alpha/beta hydrolase family NIY04_04550 PF00551 Formyl transferase NIY04_04555 PF00586 AIR synthase related protein, N-terminal domain NIY04_04555 PF02769 AIR synthase related protein, C-terminal domain NIY04_04560 PF01594 AI-2E family transporter NIY04_04565 PF08299 Bacterial dnaA protein helix-turn-helix NIY04_04565 PF11638 DnaA N-terminal domain NIY04_04565 PF00308 Bacterial dnaA protein NIY04_04595 PF00588 SpoU rRNA Methylase family NIY04_04595 PF08032 RNA 2'-O ribose methyltransferase substrate binding NIY04_04600 PF00316 Fructose-1-6-bisphosphatase, N-terminal domain NIY04_04610 PF00691 OmpA family NIY04_04615 PF07676 WD40-like Beta Propeller Repeat NIY04_04615 PF04052 TolB amino-terminal domain NIY04_04625 PF02472 Biopolymer transport protein ExbD/TolR NIY04_04630 PF01618 MotA/TolQ/ExbB proton channel family NIY04_04635 PF03061 Thioesterase superfamily NIY04_04640 PF07687 Peptidase dimerisation domain NIY04_04640 PF01546 Peptidase family M20/M25/M40 NIY04_04645 PF17864 RuvB AAA lid domain NIY04_04645 PF05491 RuvB C-terminal winged helix domain NIY04_04645 PF05496 Holliday junction DNA helicase RuvB P-loop domain NIY04_04650 PF07499 RuvA, C-terminal domain NIY04_04650 PF01330 RuvA N terminal domain NIY04_04655 PF01966 HD domain NIY04_04660 PF18076 Formylglycinamide ribonucleotide amidotransferase N-terminal NIY04_04660 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain NIY04_04660 PF02769 AIR synthase related protein, C-terminal domain NIY04_04675 PF07693 KAP family P-loop domain NIY04_04685 PF00425 chorismate binding enzyme NIY04_04695 PF00106 short chain dehydrogenase NIY04_04700 PF00550 Phosphopantetheine attachment site NIY04_04700 PF00668 Condensation domain NIY04_04700 PF00501 AMP-binding enzyme NIY04_04710 PF00501 AMP-binding enzyme NIY04_04710 PF13193 AMP-binding enzyme C-terminal domain NIY04_04710 PF00668 Condensation domain NIY04_04715 PF00975 Thioesterase domain NIY04_04715 PF00668 Condensation domain NIY04_04715 PF13193 AMP-binding enzyme C-terminal domain NIY04_04715 PF00501 AMP-binding enzyme NIY04_04715 PF00550 Phosphopantetheine attachment site NIY04_04720 PF00501 AMP-binding enzyme NIY04_04720 PF13193 AMP-binding enzyme C-terminal domain NIY04_04725 PF13434 L-lysine 6-monooxygenase (NADPH-requiring) NIY04_04730 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain NIY04_04730 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain NIY04_04745 PF01648 4'-phosphopantetheinyl transferase superfamily NIY04_04745 PF17837 4'-phosphopantetheinyl transferase N-terminal domain NIY04_04750 PF00975 Thioesterase domain NIY04_04755 PF07715 TonB-dependent Receptor Plug Domain NIY04_04755 PF00593 TonB dependent receptor NIY04_04770 PF01554 MatE NIY04_04775 PF03412 Peptidase C39 family NIY04_04775 PF00005 ABC transporter NIY04_04775 PF00664 ABC transporter transmembrane region NIY04_04810 PF06527 TniQ NIY04_04810 PF15978 Tn7-like transposition protein D NIY04_04815 PF13737 Transposase DDE domain NIY04_04820 PF15978 Tn7-like transposition protein D NIY04_04820 PF06527 TniQ NIY04_04825 PF13401 AAA domain NIY04_04825 PF11426 Tn7 transposition regulator TnsC NIY04_04830 PF00665 Integrase core domain NIY04_04835 PF08721 TnsA endonuclease C terminal NIY04_04835 PF08722 TnsA endonuclease N terminal NIY04_04850 PF01784 NIF3 (NGG1p interacting factor 3) NIY04_04855 PF00378 Enoyl-CoA hydratase/isomerase NIY04_04860 PF00293 NUDIX domain NIY04_04860 PF01467 Cytidylyltransferase-like NIY04_04870 PF00578 AhpC/TSA family NIY04_04885 PF06508 Queuosine biosynthesis protein QueC NIY04_04895 PF14805 Tetrahydrodipicolinate N-succinyltransferase N-terminal NIY04_04895 PF14602 Hexapeptide repeat of succinyl-transferase NIY04_04895 PF00132 Bacterial transferase hexapeptide (six repeats) NIY04_04905 PF03466 LysR substrate binding domain NIY04_04905 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NIY04_04910 PF12857 TOBE-like domain NIY04_04910 PF00005 ABC transporter NIY04_04915 PF00528 Binding-protein-dependent transport system inner membrane component NIY04_04920 PF00528 Binding-protein-dependent transport system inner membrane component NIY04_04935 PF01063 Amino-transferase class IV NIY04_04940 PF02618 YceG-like family NIY04_04945 PF02223 Thymidylate kinase NIY04_04955 PF00890 FAD binding domain NIY04_04955 PF02910 Fumarate reductase flavoprotein C-term NIY04_04960 PF13180 PDZ domain NIY04_04970 PF13302 Acetyltransferase (GNAT) domain NIY04_04975 PF03144 Elongation factor Tu domain 2 NIY04_04975 PF00009 Elongation factor Tu GTP binding domain NIY04_04975 PF00679 Elongation factor G C-terminus NIY04_04975 PF06421 GTP-binding protein LepA C-terminus NIY04_04980 PF10502 Signal peptidase, peptidase S26 NIY04_04990 PF00035 Double-stranded RNA binding motif NIY04_04990 PF14622 Ribonuclease-III-like NIY04_04995 PF07650 KH domain NIY04_04995 PF01926 50S ribosome-binding GTPase NIY04_05005 PF02565 Recombination protein O C terminal NIY04_05005 PF11967 Recombination protein O N terminal NIY04_05010 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ NIY04_05015 PF06175 tRNA-(MS[2]IO[6]A)-hydroxylase (MiaE) NIY04_05020 PF00106 short chain dehydrogenase NIY04_05050 PF00012 Hsp70 protein NIY04_05060 PF00155 Aminotransferase class I and II NIY04_05070 PF00990 Diguanylate cyclase, GGDEF domain NIY04_05070 PF17151 Periplasmic sensor domain NIY04_05080 PF00271 Helicase conserved C-terminal domain NIY04_05080 PF04851 Type III restriction enzyme, res subunit NIY04_05080 PF02151 UvrB/uvrC motif NIY04_05080 PF12344 Ultra-violet resistance protein B NIY04_05080 PF17757 UvrB interaction domain NIY04_05090 PF00892 EamA-like transporter family NIY04_05095 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain NIY04_05095 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain NIY04_05110 PF01018 GTP1/OBG NIY04_05110 PF01926 50S ribosome-binding GTPase NIY04_05115 PF00696 Amino acid kinase family NIY04_05115 PF01472 PUA domain NIY04_05125 PF07759 Protein of unknown function (DUF1615) NIY04_05130 PF01207 Dihydrouridine synthase (Dus) NIY04_05135 PF03060 Nitronate monooxygenase NIY04_05180 PF00875 DNA photolyase NIY04_05180 PF03441 FAD binding domain of DNA photolyase NIY04_05185 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase NIY04_05190 PF07992 Pyridine nucleotide-disulphide oxidoreductase NIY04_05195 PF07943 Penicillin-binding protein 5, C-terminal domain NIY04_05195 PF00768 D-alanyl-D-alanine carboxypeptidase NIY04_05205 PF03971 Monomeric isocitrate dehydrogenase NIY04_05210 PF00849 RNA pseudouridylate synthase NIY04_05215 PF00180 Isocitrate/isopropylmalate dehydrogenase NIY04_05235 PF06779 Uncharacterised MFS-type transporter YbfB NIY04_05240 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NIY04_05240 PF03466 LysR substrate binding domain NIY04_05245 PF00375 Sodium:dicarboxylate symporter family NIY04_05250 PF02567 Phenazine biosynthesis-like protein NIY04_05255 PF00675 Insulinase (Peptidase family M16) NIY04_05255 PF05193 Peptidase M16 inactive domain NIY04_05280 PF02581 Thiamine monophosphate synthase NIY04_05285 PF00202 Aminotransferase class-III NIY04_05295 PF00849 RNA pseudouridylate synthase NIY04_05300 PF00271 Helicase conserved C-terminal domain NIY04_05300 PF12137 RNA polymerase recycling family C-terminal NIY04_05300 PF18337 RapA N-terminal Tudor like domain NIY04_05300 PF00176 SNF2 family N-terminal domain NIY04_05300 PF18339 RapA N-terminal Tudor like domain 1 NIY04_05310 PF00440 Bacterial regulatory proteins, tetR family NIY04_05315 PF00175 Oxidoreductase NAD-binding domain NIY04_05315 PF00111 2Fe-2S iron-sulfur cluster binding domain NIY04_05315 PF00970 Oxidoreductase FAD-binding domain NIY04_05320 PF00487 Fatty acid desaturase NIY04_05325 PF02525 Flavodoxin-like fold NIY04_05340 PF00202 Aminotransferase class-III NIY04_05345 PF00282 Pyridoxal-dependent decarboxylase conserved domain NIY04_05350 PF00171 Aldehyde dehydrogenase family NIY04_05355 PF01037 Lrp/AsnC ligand binding domain NIY04_05360 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain NIY04_05360 PF00205 Thiamine pyrophosphate enzyme, central domain NIY04_05360 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain NIY04_05365 PF00324 Amino acid permease NIY04_05370 PF12849 PBP superfamily domain NIY04_05375 PF00528 Binding-protein-dependent transport system inner membrane component NIY04_05380 PF00528 Binding-protein-dependent transport system inner membrane component NIY04_05385 PF00005 ABC transporter NIY04_05390 PF08496 Peptidase family S49 N-terminal NIY04_05390 PF01343 Peptidase family S49 NIY04_05405 PF00206 Lyase NIY04_05405 PF08328 Adenylosuccinate lyase C-terminal NIY04_05410 PF04356 Protein of unknown function (DUF489) NIY04_05425 PF00132 Bacterial transferase hexapeptide (six repeats) NIY04_05430 PF00768 D-alanyl-D-alanine carboxypeptidase NIY04_05430 PF07943 Penicillin-binding protein 5, C-terminal domain NIY04_05445 PF01975 Survival protein SurE NIY04_05450 PF01551 Peptidase family M23 NIY04_05450 PF01476 LysM domain NIY04_05455 PF03466 LysR substrate binding domain NIY04_05455 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NIY04_05460 PF05362 Lon protease (S16) C-terminal proteolytic domain NIY04_05460 PF13654 AAA domain NIY04_05465 PF07690 Major Facilitator Superfamily NIY04_05470 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily NIY04_05475 PF13593 SBF-like CPA transporter family (DUF4137) NIY04_05480 PF01197 Ribosomal protein L31 NIY04_05485 PF12792 CSS motif domain associated with EAL NIY04_05485 PF00563 EAL domain NIY04_05495 PF04055 Radical SAM superfamily NIY04_05500 PF01132 Elongation factor P (EF-P) OB domain NIY04_05500 PF09285 Elongation factor P, C-terminal NIY04_05500 PF08207 Elongation factor P (EF-P) KOW-like domain NIY04_05505 PF13722 5TM C-terminal transporter carbon starvation CstA NIY04_05505 PF02554 Carbon starvation protein CstA NIY04_05510 PF04328 Selenoprotein, putative NIY04_05565 PF00857 Isochorismatase family NIY04_05570 PF03466 LysR substrate binding domain NIY04_05570 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NIY04_05580 PF00743 Flavin-binding monooxygenase-like NIY04_05585 PF00561 alpha/beta hydrolase fold NIY04_05595 PF01370 NAD dependent epimerase/dehydratase family NIY04_05600 PF12833 Helix-turn-helix domain NIY04_05600 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term NIY04_05640 PF02678 Pirin NIY04_05640 PF17954 Quercetinase C-terminal cupin domain NIY04_05645 PF00291 Pyridoxal-phosphate dependent enzyme NIY04_05650 PF13309 HTH domain NIY04_05650 PF08348 YheO-like PAS domain NIY04_05660 PF00501 AMP-binding enzyme NIY04_05660 PF13193 AMP-binding enzyme C-terminal domain NIY04_05660 PF00668 Condensation domain NIY04_05660 PF00550 Phosphopantetheine attachment site NIY04_05665 PF00501 AMP-binding enzyme NIY04_05665 PF00975 Thioesterase domain NIY04_05665 PF00550 Phosphopantetheine attachment site NIY04_05665 PF00668 Condensation domain NIY04_05665 PF13193 AMP-binding enzyme C-terminal domain NIY04_05670 PF01032 FecCD transport family NIY04_05675 PF01032 FecCD transport family NIY04_05680 PF00005 ABC transporter NIY04_05685 PF01497 Periplasmic binding protein NIY04_05690 PF00593 TonB dependent receptor NIY04_05690 PF07715 TonB-dependent Receptor Plug Domain NIY04_05695 PF13434 L-lysine 6-monooxygenase (NADPH-requiring) NIY04_05700 PF00550 Phosphopantetheine attachment site NIY04_05700 PF00668 Condensation domain NIY04_05700 PF00501 AMP-binding enzyme NIY04_05705 PF00501 AMP-binding enzyme NIY04_05705 PF13193 AMP-binding enzyme C-terminal domain NIY04_05710 PF00857 Isochorismatase family NIY04_05710 PF00550 Phosphopantetheine attachment site NIY04_05715 PF00282 Pyridoxal-dependent decarboxylase conserved domain NIY04_05720 PF00664 ABC transporter transmembrane region NIY04_05720 PF00005 ABC transporter NIY04_05725 PF00005 ABC transporter NIY04_05730 PF00975 Thioesterase domain NIY04_05740 PF00425 chorismate binding enzyme NIY04_05750 PF01208 Uroporphyrinogen decarboxylase (URO-D) NIY04_05755 PF05675 Protein of unknown function (DUF817) NIY04_05770 PF00144 Beta-lactamase NIY04_05775 PF01227 GTP cyclohydrolase I NIY04_05780 PF00111 2Fe-2S iron-sulfur cluster binding domain NIY04_05780 PF01799 [2Fe-2S] binding domain NIY04_05785 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase NIY04_05785 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain NIY04_05800 PF00218 Indole-3-glycerol phosphate synthase NIY04_05805 PF02885 Glycosyl transferase family, helical bundle domain NIY04_05805 PF00591 Glycosyl transferase family, a/b domain NIY04_05810 PF07715 TonB-dependent Receptor Plug Domain NIY04_05810 PF00593 TonB dependent receptor NIY04_05815 PF11838 ERAP1-like C-terminal domain NIY04_05815 PF01433 Peptidase family M1 domain NIY04_05820 PF00117 Glutamine amidotransferase class-I NIY04_05830 PF00854 POT family NIY04_05835 PF00120 Glutamine synthetase, catalytic domain NIY04_05835 PF03951 Glutamine synthetase, beta-Grasp domain NIY04_05840 PF04345 Chorismate lyase NIY04_05845 PF01040 UbiA prenyltransferase family NIY04_05880 PF02777 Iron/manganese superoxide dismutases, C-terminal domain NIY04_05880 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain NIY04_05885 PF01784 NIF3 (NGG1p interacting factor 3) NIY04_05890 PF13180 PDZ domain NIY04_05895 PF01743 Poly A polymerase head domain NIY04_05895 PF12627 Probable RNA and SrmB- binding site of polymerase A NIY04_05900 PF00390 Malic enzyme, N-terminal domain NIY04_05900 PF01515 Phosphate acetyl/butaryl transferase NIY04_05900 PF03949 Malic enzyme, NAD binding domain NIY04_05905 PF00563 EAL domain NIY04_05905 PF00990 Diguanylate cyclase, GGDEF domain NIY04_05905 PF03707 Bacterial signalling protein N terminal repeat NIY04_05910 PF04452 RNA methyltransferase NIY04_05915 PF02219 Methylenetetrahydrofolate reductase NIY04_05920 PF05221 S-adenosyl-L-homocysteine hydrolase NIY04_05920 PF00670 S-adenosyl-L-homocysteine hydrolase, NAD binding domain NIY04_05935 PF00441 Acyl-CoA dehydrogenase, C-terminal domain NIY04_05935 PF02771 Acyl-CoA dehydrogenase, N-terminal domain NIY04_05935 PF09317 Domain of unknown function (DUF1974) NIY04_05940 PF04055 Radical SAM superfamily NIY04_05945 PF07992 Pyridine nucleotide-disulphide oxidoreductase NIY04_05945 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain NIY04_05955 PF07690 Major Facilitator Superfamily NIY04_05965 PF00557 Metallopeptidase family M24 NIY04_05970 PF00318 Ribosomal protein S2 NIY04_05975 PF00889 Elongation factor TS NIY04_05985 PF12833 Helix-turn-helix domain NIY04_06005 PF03330 Lytic transglycolase NIY04_06005 PF05036 Sporulation related domain NIY04_06010 PF13406 Transglycosylase SLT domain NIY04_06015 PF01098 Cell cycle protein NIY04_06025 PF14489 QueF-like protein NIY04_06025 PF14819 Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term NIY04_06030 PF01061 ABC-2 type transporter NIY04_06035 PF00005 ABC transporter NIY04_06065 PF00464 Serine hydroxymethyltransferase NIY04_06070 PF02321 Outer membrane efflux protein NIY04_06075 PF00873 AcrB/AcrD/AcrF family NIY04_06080 PF13533 Biotin-lipoyl like NIY04_06085 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NIY04_06085 PF03466 LysR substrate binding domain NIY04_06090 PF00497 Bacterial extracellular solute-binding proteins, family 3 NIY04_06095 PF00528 Binding-protein-dependent transport system inner membrane component NIY04_06100 PF00528 Binding-protein-dependent transport system inner membrane component NIY04_06105 PF00005 ABC transporter NIY04_06110 PF00893 Small Multidrug Resistance protein NIY04_06115 PF00037 4Fe-4S binding domain NIY04_06120 PF16325 Peptidase family U32 C-terminal domain NIY04_06120 PF01136 Peptidase family U32 NIY04_06125 PF00155 Aminotransferase class I and II NIY04_06125 PF00392 Bacterial regulatory proteins, gntR family NIY04_06130 PF02567 Phenazine biosynthesis-like protein NIY04_06135 PF00970 Oxidoreductase FAD-binding domain NIY04_06135 PF00175 Oxidoreductase NAD-binding domain NIY04_06140 PF01980 tRNA-methyltransferase O NIY04_06140 PF18389 TrmO C-terminal domain NIY04_06150 PF00437 Type II/IV secretion system protein NIY04_06150 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain NIY04_06160 PF00072 Response regulator receiver domain NIY04_06160 PF00486 Transcriptional regulatory protein, C terminal NIY04_06165 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NIY04_06165 PF00512 His Kinase A (phospho-acceptor) domain NIY04_06165 PF08521 Two-component sensor kinase N-terminal NIY04_06175 PF00293 NUDIX domain NIY04_06185 PF00912 Transglycosylase NIY04_06185 PF00905 Penicillin binding protein transpeptidase domain NIY04_06185 PF14814 Bifunctional transglycosylase second domain NIY04_06190 PF01513 ATP-NAD kinase NIY04_06195 PF07023 Protein of unknown function (DUF1315) NIY04_06200 PF02885 Glycosyl transferase family, helical bundle domain NIY04_06200 PF00591 Glycosyl transferase family, a/b domain NIY04_06205 PF00375 Sodium:dicarboxylate symporter family NIY04_06210 PF00441 Acyl-CoA dehydrogenase, C-terminal domain NIY04_06210 PF02770 Acyl-CoA dehydrogenase, middle domain NIY04_06210 PF02771 Acyl-CoA dehydrogenase, N-terminal domain NIY04_06215 PF00756 Putative esterase NIY04_06220 PF00800 Prephenate dehydratase NIY04_06220 PF01842 ACT domain NIY04_06220 PF01817 Chorismate mutase type II NIY04_06225 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) NIY04_06235 PF07687 Peptidase dimerisation domain NIY04_06235 PF01546 Peptidase family M20/M25/M40 NIY04_06240 PF01137 RNA 3'-terminal phosphate cyclase NIY04_06240 PF05189 RNA 3'-terminal phosphate cyclase (RTC), insert domain NIY04_06255 PF01139 tRNA-splicing ligase RtcB NIY04_06260 PF00753 Metallo-beta-lactamase superfamily NIY04_06265 PF00158 Sigma-54 interaction domain NIY04_06265 PF06956 Regulator of RNA terminal phosphate cyclase NIY04_06275 PF03883 Peroxide stress protein YaaA NIY04_06285 PF05690 Thiazole biosynthesis protein ThiG NIY04_06295 PF04241 Protein of unknown function (DUF423) NIY04_06300 PF04542 Sigma-70 region 2 NIY04_06300 PF04545 Sigma-70, region 4 NIY04_06300 PF00140 Sigma-70 factor, region 1.2 NIY04_06315 PF00313 'Cold-shock' DNA-binding domain NIY04_06320 PF00270 DEAD/DEAH box helicase NIY04_06320 PF00271 Helicase conserved C-terminal domain NIY04_06330 PF00881 Nitroreductase family NIY04_06335 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus NIY04_06335 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus NIY04_06355 PF01180 Dihydroorotate dehydrogenase NIY04_06360 PF02674 Colicin V production protein NIY04_06365 PF00156 Phosphoribosyl transferase domain NIY04_06380 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain NIY04_06380 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain NIY04_06385 PF01435 Peptidase family M48 NIY04_06390 PF09424 Yqey-like protein NIY04_06395 PF01165 Ribosomal protein S21 NIY04_06400 PF00814 Glycoprotease family NIY04_06420 PF03793 PASTA domain NIY04_06420 PF00069 Protein kinase domain NIY04_06445 PF03466 LysR substrate binding domain NIY04_06445 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NIY04_06450 PF00202 Aminotransferase class-III NIY04_06455 PF00171 Aldehyde dehydrogenase family NIY04_06460 PF00324 Amino acid permease NIY04_06490 PF04076 Bacterial OB fold (BOF) protein NIY04_06515 PF00561 alpha/beta hydrolase fold NIY04_06520 PF03616 Sodium/glutamate symporter NIY04_06530 PF00392 Bacterial regulatory proteins, gntR family NIY04_06530 PF07729 FCD domain NIY04_06580 PF00083 Sugar (and other) transporter NIY04_06580 PF08946 Osmosensory transporter coiled coil NIY04_06585 PF00293 NUDIX domain NIY04_06615 PF04403 Paraquat-inducible protein A NIY04_06620 PF02470 MlaD protein NIY04_06635 PF01177 Asp/Glu/Hydantoin racemase NIY04_06640 PF00892 EamA-like transporter family NIY04_06645 PF07995 Glucose / Sorbosone dehydrogenase NIY04_06665 PF00375 Sodium:dicarboxylate symporter family NIY04_06675 PF16123 Hydroxyacylglutathione hydrolase C-terminus NIY04_06675 PF00753 Metallo-beta-lactamase superfamily NIY04_06680 PF00528 Binding-protein-dependent transport system inner membrane component NIY04_06685 PF00005 ABC transporter NIY04_06685 PF09383 NIL domain NIY04_06690 PF03180 NLPA lipoprotein NIY04_06695 PF02844 Phosphoribosylglycinamide synthetase, N domain NIY04_06695 PF02843 Phosphoribosylglycinamide synthetase, C domain NIY04_06695 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain NIY04_06700 PF01808 AICARFT/IMPCHase bienzyme NIY04_06700 PF02142 MGS-like domain NIY04_06705 PF02954 Bacterial regulatory protein, Fis family NIY04_06725 PF01134 Glucose inhibited division protein A NIY04_06725 PF13932 GidA associated domain NIY04_06735 PF14403 Circularly permuted ATP-grasp type 2 NIY04_06745 PF08379 Bacterial transglutaminase-like N-terminal region NIY04_06745 PF01841 Transglutaminase-like superfamily NIY04_06755 PF00842 Alanine racemase, C-terminal domain NIY04_06755 PF01168 Alanine racemase, N-terminal domain NIY04_06760 PF00772 DnaB-like helicase N terminal domain NIY04_06760 PF03796 DnaB-like helicase C terminal domain NIY04_06765 PF03948 Ribosomal protein L9, C-terminal domain NIY04_06765 PF01281 Ribosomal protein L9, N-terminal domain NIY04_06770 PF01084 Ribosomal protein S18 NIY04_06775 PF01250 Ribosomal protein S6 NIY04_06780 PF01040 UbiA prenyltransferase family NIY04_06785 PF03626 Prokaryotic Cytochrome C oxidase subunit IV NIY04_06790 PF00510 Cytochrome c oxidase subunit III NIY04_06795 PF00115 Cytochrome C and Quinol oxidase polypeptide I NIY04_06800 PF00116 Cytochrome C oxidase subunit II, periplasmic domain NIY04_06800 PF06481 COX Aromatic Rich Motif NIY04_06810 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain NIY04_06810 PF00391 PEP-utilising enzyme, mobile domain NIY04_06810 PF02896 PEP-utilising enzyme, TIM barrel domain NIY04_06815 PF03618 Kinase/pyrophosphorylase NIY04_06825 PF01522 Polysaccharide deacetylase NIY04_06825 PF14883 Hypothetical glycosyl hydrolase family 13 NIY04_06830 PF00535 Glycosyl transferase family 2 NIY04_06835 PF13994 PgaD-like protein NIY04_06845 PF00296 Luciferase-like monooxygenase NIY04_06860 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NIY04_06860 PF03466 LysR substrate binding domain NIY04_06870 PF03462 PCRF domain NIY04_06870 PF00472 RF-1 domain NIY04_06875 PF13847 Methyltransferase domain NIY04_06875 PF17827 PrmC N-terminal domain NIY04_06880 PF12833 Helix-turn-helix domain NIY04_06885 PF00106 short chain dehydrogenase NIY04_06890 PF02770 Acyl-CoA dehydrogenase, middle domain NIY04_06890 PF02771 Acyl-CoA dehydrogenase, N-terminal domain NIY04_06890 PF00441 Acyl-CoA dehydrogenase, C-terminal domain NIY04_06895 PF13193 AMP-binding enzyme C-terminal domain NIY04_06895 PF00501 AMP-binding enzyme NIY04_06900 PF01613 Flavin reductase like domain NIY04_06905 PF00899 ThiF family NIY04_06910 PF03109 ABC1 family NIY04_06915 PF02152 Dihydroneopterin aldolase NIY04_06925 PF03814 Potassium-transporting ATPase A subunit NIY04_06935 PF02669 K+-transporting ATPase, c chain NIY04_06940 PF13493 Domain of unknown function (DUF4118) NIY04_06940 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NIY04_06940 PF00512 His Kinase A (phospho-acceptor) domain NIY04_06940 PF02702 Osmosensitive K+ channel His kinase sensor domain NIY04_06945 PF00072 Response regulator receiver domain NIY04_06945 PF00486 Transcriptional regulatory protein, C terminal NIY04_06950 PF00120 Glutamine synthetase, catalytic domain NIY04_06960 PF03232 Ubiquinone biosynthesis protein COQ7 NIY04_06965 PF07690 Major Facilitator Superfamily NIY04_06970 PF01103 Surface antigen NIY04_06970 PF07244 Surface antigen variable number repeat NIY04_06970 PF17243 POTRA domain TamA domain 1 NIY04_06985 PF00330 Aconitase family (aconitate hydratase) NIY04_06985 PF06434 Aconitate hydratase 2 N-terminus NIY04_06985 PF11791 Aconitate B N-terminal domain NIY04_06995 PF00520 Ion transport protein NIY04_06995 PF00027 Cyclic nucleotide-binding domain NIY04_07000 PF07690 Major Facilitator Superfamily NIY04_07015 PF03466 LysR substrate binding domain NIY04_07015 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NIY04_07020 PF04284 Protein of unknown function (DUF441) NIY04_07030 PF01479 S4 domain NIY04_07030 PF00849 RNA pseudouridylate synthase NIY04_07045 PF01479 S4 domain NIY04_07045 PF00849 RNA pseudouridylate synthase NIY04_07050 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE NIY04_07055 PF08676 MutL C terminal dimerisation domain NIY04_07055 PF01119 DNA mismatch repair protein, C-terminal domain NIY04_07065 PF17209 Hfq protein NIY04_07075 PF00881 Nitroreductase family NIY04_07085 PF00149 Calcineurin-like phosphoesterase NIY04_07090 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD NIY04_07095 PF00749 tRNA synthetases class I (E and Q), catalytic domain NIY04_07095 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain NIY04_07100 PF00117 Glutamine amidotransferase class-I NIY04_07100 PF00958 GMP synthase C terminal domain NIY04_07100 PF02540 NAD synthase NIY04_07105 PF05985 Ethanolamine ammonia-lyase light chain (EutC) NIY04_07110 PF06751 Ethanolamine ammonia lyase large subunit (EutB) NIY04_07115 PF13520 Amino acid permease NIY04_07120 PF00171 Aldehyde dehydrogenase family NIY04_07135 PF00465 Iron-containing alcohol dehydrogenase NIY04_07140 PF05970 PIF1-like helicase NIY04_07140 PF14493 Helix-turn-helix domain NIY04_07150 PF02110 Hydroxyethylthiazole kinase family NIY04_07165 PF17432 Domain of unknown function (DUF3458_C) ARM repeats NIY04_07165 PF01433 Peptidase family M1 domain NIY04_07165 PF11940 Domain of unknown function (DUF3458) Ig-like fold NIY04_07180 PF13954 PapC N-terminal domain NIY04_07180 PF00577 Outer membrane usher protein NIY04_07180 PF13953 PapC C-terminal domain NIY04_07205 PF01817 Chorismate mutase type II NIY04_07210 PF01037 Lrp/AsnC ligand binding domain NIY04_07225 PF00440 Bacterial regulatory proteins, tetR family NIY04_07230 PF00593 TonB dependent receptor NIY04_07230 PF07715 TonB-dependent Receptor Plug Domain NIY04_07235 PF00924 Mechanosensitive ion channel NIY04_07265 PF00593 TonB dependent receptor NIY04_07265 PF07715 TonB-dependent Receptor Plug Domain NIY04_07285 PF00005 ABC transporter NIY04_07285 PF12848 ABC transporter NIY04_07290 PF00582 Universal stress protein family NIY04_07310 PF00690 Cation transporter/ATPase, N-terminus NIY04_07310 PF00689 Cation transporting ATPase, C-terminus NIY04_07315 PF02308 MgtC family NIY04_07320 PF03594 Benzoate membrane transport protein NIY04_07325 PF01037 Lrp/AsnC ligand binding domain NIY04_07330 PF01810 LysE type translocator NIY04_07335 PF00923 Transaldolase/Fructose-6-phosphate aldolase NIY04_07340 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NIY04_07340 PF03466 LysR substrate binding domain NIY04_07350 PF02803 Thiolase, C-terminal domain NIY04_07350 PF00108 Thiolase, N-terminal domain NIY04_07360 PF01575 MaoC like domain NIY04_07365 PF00144 Beta-lactamase NIY04_07375 PF07690 Major Facilitator Superfamily NIY04_07380 PF12170 DNA polymerase III tau subunit V interacting with alpha NIY04_07380 PF12169 DNA polymerase III subunits gamma and tau domain III NIY04_07380 PF12168 DNA polymerase III subunits tau domain IV DnaB-binding NIY04_07385 PF05506 Domain of unknown function (DUF756) NIY04_07385 PF04185 Phosphoesterase family NIY04_07390 PF03061 Thioesterase superfamily NIY04_07395 PF00465 Iron-containing alcohol dehydrogenase NIY04_07405 PF01451 Low molecular weight phosphotyrosine protein phosphatase NIY04_07410 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain NIY04_07410 PF01565 FAD binding domain NIY04_07425 PF01645 Conserved region in glutamate synthase NIY04_07530 PF00145 C-5 cytosine-specific DNA methylase NIY04_07570 PF10548 P22AR C-terminal domain NIY04_07570 PF02498 BRO family, N-terminal domain NIY04_07715 PF15919 HicB_like antitoxin of bacterial toxin-antitoxin system NIY04_07785 PF00817 impB/mucB/samB family NIY04_07785 PF13438 Domain of unknown function (DUF4113) NIY04_07785 PF11798 IMS family HHH motif NIY04_07785 PF11799 impB/mucB/samB family C-terminal domain NIY04_07800 PF12832 MFS_1 like family NIY04_07810 PF02785 Biotin carboxylase C-terminal domain NIY04_07810 PF00289 Biotin carboxylase, N-terminal domain NIY04_07810 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain NIY04_07815 PF00364 Biotin-requiring enzyme NIY04_07820 PF01220 Dehydroquinase class II NIY04_07825 PF13438 Domain of unknown function (DUF4113) NIY04_07825 PF11799 impB/mucB/samB family C-terminal domain NIY04_07825 PF00817 impB/mucB/samB family NIY04_07835 PF00005 ABC transporter NIY04_07840 PF00486 Transcriptional regulatory protein, C terminal NIY04_07840 PF00072 Response regulator receiver domain NIY04_07850 PF01077 Nitrite and sulphite reductase 4Fe-4S domain NIY04_07850 PF04324 BFD-like [2Fe-2S] binding domain NIY04_07850 PF07992 Pyridine nucleotide-disulphide oxidoreductase NIY04_07850 PF13806 Rieske-like [2Fe-2S] domain NIY04_07850 PF18267 Rubredoxin NAD+ reductase C-terminal domain NIY04_07850 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain NIY04_07855 PF01077 Nitrite and sulphite reductase 4Fe-4S domain NIY04_07855 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain NIY04_07855 PF04324 BFD-like [2Fe-2S] binding domain NIY04_07855 PF18267 Rubredoxin NAD+ reductase C-terminal domain NIY04_07855 PF07992 Pyridine nucleotide-disulphide oxidoreductase NIY04_07860 PF04324 BFD-like [2Fe-2S] binding domain NIY04_07860 PF04879 Molybdopterin oxidoreductase Fe4S4 domain NIY04_07860 PF00384 Molybdopterin oxidoreductase NIY04_07860 PF01568 Molydopterin dinucleotide binding domain NIY04_07865 PF12804 MobA-like NTP transferase domain NIY04_07870 PF00384 Molybdopterin oxidoreductase NIY04_07870 PF01568 Molydopterin dinucleotide binding domain NIY04_07870 PF04879 Molybdopterin oxidoreductase Fe4S4 domain NIY04_07875 PF06463 Molybdenum Cofactor Synthesis C NIY04_07875 PF04055 Radical SAM superfamily NIY04_07885 PF02391 MoaE protein NIY04_07890 PF01967 MoaC family NIY04_07890 PF00994 Probable molybdopterin binding domain NIY04_07895 PF03453 MoeA N-terminal region (domain I and II) NIY04_07895 PF03454 MoeA C-terminal region (domain IV) NIY04_07895 PF00994 Probable molybdopterin binding domain NIY04_07900 PF01638 HxlR-like helix-turn-helix NIY04_07905 PF00392 Bacterial regulatory proteins, gntR family NIY04_07905 PF00155 Aminotransferase class I and II NIY04_07910 PF00892 EamA-like transporter family NIY04_07930 PF02635 DsrE/DsrF-like family NIY04_07935 PF16363 GDP-mannose 4,6 dehydratase NIY04_07940 PF10415 Fumarase C C-terminus NIY04_07940 PF00206 Lyase NIY04_07960 PF01266 FAD dependent oxidoreductase NIY04_07970 PF02542 YgbB family NIY04_07980 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain NIY04_07980 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain NIY04_07985 PF00440 Bacterial regulatory proteins, tetR family NIY04_07990 PF00072 Response regulator receiver domain NIY04_07990 PF02954 Bacterial regulatory protein, Fis family NIY04_07990 PF00158 Sigma-54 interaction domain NIY04_07995 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NIY04_07995 PF00512 His Kinase A (phospho-acceptor) domain NIY04_07995 PF00989 PAS fold NIY04_08005 PF00919 Uncharacterized protein family UPF0004 NIY04_08005 PF04055 Radical SAM superfamily NIY04_08005 PF18693 TRAM domain NIY04_08010 PF00696 Amino acid kinase family NIY04_08015 PF01765 Ribosome recycling factor NIY04_08020 PF01255 Putative undecaprenyl diphosphate synthase NIY04_08030 PF13288 DXP reductoisomerase C-terminal domain NIY04_08030 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase NIY04_08030 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain NIY04_08035 PF02163 Peptidase family M50 NIY04_08035 PF13180 PDZ domain NIY04_08035 PF17820 PDZ domain NIY04_08040 PF01103 Surface antigen NIY04_08040 PF07244 Surface antigen variable number repeat NIY04_08050 PF00132 Bacterial transferase hexapeptide (six repeats) NIY04_08050 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD NIY04_08055 PF07977 FabA-like domain NIY04_08060 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 NIY04_08060 PF00132 Bacterial transferase hexapeptide (six repeats) NIY04_08075 PF02631 RecX family NIY04_08080 PF00154 recA bacterial DNA recombination protein NIY04_08085 PF01479 S4 domain NIY04_08090 PF13419 Haloacid dehalogenase-like hydrolase NIY04_08115 PF01037 Lrp/AsnC ligand binding domain NIY04_08120 PF00266 Aminotransferase class-V NIY04_08125 PF00324 Amino acid permease NIY04_08140 PF05922 Peptidase inhibitor I9 NIY04_08140 PF00082 Subtilase family NIY04_08145 PF01740 STAS domain NIY04_08145 PF00916 Sulfate permease family NIY04_08150 PF02586 SOS response associated peptidase (SRAP) NIY04_08155 PF07995 Glucose / Sorbosone dehydrogenase NIY04_08165 PF00563 EAL domain NIY04_08165 PF03707 Bacterial signalling protein N terminal repeat NIY04_08165 PF00990 Diguanylate cyclase, GGDEF domain NIY04_08180 PF02378 Phosphotransferase system, EIIC NIY04_08180 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit NIY04_08185 PF00294 pfkB family carbohydrate kinase NIY04_08190 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 NIY04_08190 PF05524 PEP-utilising enzyme, N-terminal NIY04_08190 PF00381 PTS HPr component phosphorylation site NIY04_08190 PF02896 PEP-utilising enzyme, TIM barrel domain NIY04_08190 PF00391 PEP-utilising enzyme, mobile domain NIY04_08215 PF05525 Branched-chain amino acid transport protein NIY04_08220 PF00557 Metallopeptidase family M24 NIY04_08225 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NIY04_08225 PF03466 LysR substrate binding domain NIY04_08235 PF00462 Glutaredoxin NIY04_08240 PF00202 Aminotransferase class-III NIY04_08245 PF00478 IMP dehydrogenase / GMP reductase domain NIY04_08245 PF00571 CBS domain NIY04_08270 PF00448 SRP54-type protein, GTPase domain NIY04_08270 PF02881 SRP54-type protein, helical bundle domain NIY04_08280 PF09829 Uncharacterized protein conserved in bacteria (DUF2057) NIY04_08295 PF08173 Membrane bound YbgT-like protein NIY04_08300 PF02322 Cytochrome bd terminal oxidase subunit II NIY04_08305 PF01654 Cytochrome bd terminal oxidase subunit I NIY04_08315 PF07290 Protein of unknown function (DUF1449) NIY04_08325 PF00294 pfkB family carbohydrate kinase NIY04_08330 PF07715 TonB-dependent Receptor Plug Domain NIY04_08330 PF00593 TonB dependent receptor NIY04_08335 PF05193 Peptidase M16 inactive domain NIY04_08335 PF08367 Peptidase M16C associated NIY04_08335 PF00675 Insulinase (Peptidase family M16) NIY04_08340 PF02253 Phospholipase A1 NIY04_08345 PF02386 Cation transport protein NIY04_08350 PF02080 TrkA-C domain NIY04_08350 PF02254 TrkA-N domain NIY04_08355 PF00291 Pyridoxal-phosphate dependent enzyme NIY04_08355 PF00585 C-terminal regulatory domain of Threonine dehydratase NIY04_08360 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) NIY04_08375 PF01118 Semialdehyde dehydrogenase, NAD binding domain NIY04_08375 PF02774 Semialdehyde dehydrogenase, dimerisation domain NIY04_08385 PF02617 ATP-dependent Clp protease adaptor protein ClpS NIY04_08390 PF07724 AAA domain (Cdc48 subfamily) NIY04_08390 PF10431 C-terminal, D2-small domain, of ClpB protein NIY04_08390 PF00004 ATPase family associated with various cellular activities (AAA) NIY04_08390 PF02861 Clp amino terminal domain, pathogenicity island component NIY04_08390 PF17871 AAA lid domain NIY04_08395 PF02694 Uncharacterised BCR, YnfA/UPF0060 family NIY04_08400 PF00793 DAHP synthetase I family NIY04_08415 PF00724 NADH:flavin oxidoreductase / NADH oxidase family NIY04_08415 PF07992 Pyridine nucleotide-disulphide oxidoreductase NIY04_08445 PF06418 CTP synthase N-terminus NIY04_08445 PF00117 Glutamine amidotransferase class-I NIY04_08450 PF00793 DAHP synthetase I family NIY04_08455 PF03952 Enolase, N-terminal domain NIY04_08455 PF00113 Enolase, C-terminal TIM barrel domain NIY04_08460 PF04239 Protein of unknown function (DUF421) NIY04_08465 PF04977 Septum formation initiator NIY04_08470 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase NIY04_08475 PF01144 Coenzyme A transferase NIY04_08480 PF01144 Coenzyme A transferase NIY04_08485 PF02803 Thiolase, C-terminal domain NIY04_08485 PF00108 Thiolase, N-terminal domain NIY04_08490 PF10397 Adenylosuccinate lyase C-terminus NIY04_08490 PF00206 Lyase NIY04_08495 PF00561 alpha/beta hydrolase fold NIY04_08500 PF07690 Major Facilitator Superfamily NIY04_08505 PF02627 Carboxymuconolactone decarboxylase family NIY04_08510 PF00775 Dioxygenase NIY04_08510 PF12391 Protocatechuate 3,4-dioxygenase beta subunit N terminal NIY04_08515 PF00775 Dioxygenase NIY04_08520 PF01487 Type I 3-dehydroquinase NIY04_08525 PF05048 Periplasmic copper-binding protein (NosD) NIY04_08530 PF04966 Carbohydrate-selective porin, OprB family NIY04_08535 PF13360 PQQ-like domain NIY04_08535 PF01011 PQQ enzyme repeat NIY04_08545 PF04143 Sulphur transport NIY04_08555 PF00753 Metallo-beta-lactamase superfamily NIY04_08560 PF09339 IclR helix-turn-helix domain NIY04_08560 PF01614 Bacterial transcriptional regulator NIY04_08565 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NIY04_08565 PF03466 LysR substrate binding domain NIY04_08570 PF00441 Acyl-CoA dehydrogenase, C-terminal domain NIY04_08570 PF02770 Acyl-CoA dehydrogenase, middle domain NIY04_08570 PF02771 Acyl-CoA dehydrogenase, N-terminal domain NIY04_08585 PF00106 short chain dehydrogenase NIY04_08595 PF07690 Major Facilitator Superfamily NIY04_08605 PF01425 Amidase NIY04_08610 PF08028 Acyl-CoA dehydrogenase, C-terminal domain NIY04_08625 PF00355 Rieske [2Fe-2S] domain NIY04_08625 PF00848 Ring hydroxylating alpha subunit (catalytic domain) NIY04_08640 PF00111 2Fe-2S iron-sulfur cluster binding domain NIY04_08640 PF00175 Oxidoreductase NAD-binding domain NIY04_08645 PF01613 Flavin reductase like domain NIY04_08650 PF02311 AraC-like ligand binding domain NIY04_08650 PF12833 Helix-turn-helix domain NIY04_08655 PF02728 Copper amine oxidase, N3 domain NIY04_08655 PF02727 Copper amine oxidase, N2 domain NIY04_08655 PF07833 Copper amine oxidase N-terminal domain NIY04_08655 PF01179 Copper amine oxidase, enzyme domain NIY04_08665 PF00171 Aldehyde dehydrogenase family NIY04_08670 PF01804 Penicillin amidase NIY04_08675 PF12146 Serine aminopeptidase, S33 NIY04_08680 PF02803 Thiolase, C-terminal domain NIY04_08680 PF00108 Thiolase, N-terminal domain NIY04_08685 PF01144 Coenzyme A transferase NIY04_08690 PF01144 Coenzyme A transferase NIY04_08695 PF04444 Catechol dioxygenase N terminus NIY04_08695 PF00775 Dioxygenase NIY04_08700 PF02426 Muconolactone delta-isomerase NIY04_08705 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain NIY04_08705 PF13378 Enolase C-terminal domain-like NIY04_08710 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NIY04_08710 PF03466 LysR substrate binding domain NIY04_08720 PF00392 Bacterial regulatory proteins, gntR family NIY04_08720 PF07729 FCD domain NIY04_08725 PF00920 Dehydratase family NIY04_08730 PF07690 Major Facilitator Superfamily NIY04_08740 PF00171 Aldehyde dehydrogenase family NIY04_08750 PF00561 alpha/beta hydrolase fold NIY04_08755 PF00724 NADH:flavin oxidoreductase / NADH oxidase family NIY04_08755 PF07992 Pyridine nucleotide-disulphide oxidoreductase NIY04_08760 PF00106 short chain dehydrogenase NIY04_08765 PF01872 RibD C-terminal domain NIY04_08775 PF13411 MerR HTH family regulatory protein NIY04_08785 PF07992 Pyridine nucleotide-disulphide oxidoreductase NIY04_08795 PF12706 Beta-lactamase superfamily domain NIY04_08800 PF08359 YsiA-like protein, C-terminal region NIY04_08800 PF00440 Bacterial regulatory proteins, tetR family NIY04_08805 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NIY04_08805 PF03466 LysR substrate binding domain NIY04_08820 PF00106 short chain dehydrogenase NIY04_08825 PF01575 MaoC like domain NIY04_08830 PF02771 Acyl-CoA dehydrogenase, N-terminal domain NIY04_08830 PF02770 Acyl-CoA dehydrogenase, middle domain NIY04_08830 PF00441 Acyl-CoA dehydrogenase, C-terminal domain NIY04_08830 PF12806 Acetyl-CoA dehydrogenase C-terminal like NIY04_08840 PF00501 AMP-binding enzyme NIY04_08840 PF13193 AMP-binding enzyme C-terminal domain NIY04_08895 PF10077 Uncharacterized protein conserved in bacteria (DUF2314) NIY04_08900 PF07690 Major Facilitator Superfamily NIY04_08905 PF04909 Amidohydrolase NIY04_08915 PF00392 Bacterial regulatory proteins, gntR family NIY04_08915 PF07702 UTRA domain NIY04_08920 PF08450 SMP-30/Gluconolactonase/LRE-like region NIY04_08930 PF03466 LysR substrate binding domain NIY04_08930 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NIY04_08945 PF00529 HlyD membrane-fusion protein of T1SS NIY04_08945 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion NIY04_08960 PF00171 Aldehyde dehydrogenase family NIY04_08965 PF00920 Dehydratase family NIY04_08975 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NIY04_08975 PF03466 LysR substrate binding domain NIY04_08980 PF01370 NAD dependent epimerase/dehydratase family NIY04_08985 PF07690 Major Facilitator Superfamily NIY04_08990 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase NIY04_08990 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase NIY04_08995 PF06719 AraC-type transcriptional regulator N-terminus NIY04_08995 PF12833 Helix-turn-helix domain NIY04_09000 PF08240 Alcohol dehydrogenase GroES-like domain NIY04_09000 PF00107 Zinc-binding dehydrogenase NIY04_09010 PF01032 FecCD transport family NIY04_09015 PF00005 ABC transporter NIY04_09035 PF14572 Phosphoribosyl synthetase-associated domain NIY04_09035 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase NIY04_09040 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family NIY04_09070 PF03472 Autoinducer binding domain NIY04_09070 PF00196 Bacterial regulatory proteins, luxR family NIY04_09075 PF01425 Amidase NIY04_09085 PF07690 Major Facilitator Superfamily NIY04_09110 PF01975 Survival protein SurE NIY04_09120 PF13291 ACT domain NIY04_09120 PF02824 TGS domain NIY04_09120 PF04607 Region found in RelA / SpoT proteins NIY04_09145 PF06114 IrrE N-terminal-like domain NIY04_09155 PF13673 Acetyltransferase (GNAT) domain NIY04_09185 PF00106 short chain dehydrogenase NIY04_09195 PF12146 Serine aminopeptidase, S33 NIY04_09200 PF02311 AraC-like ligand binding domain NIY04_09200 PF12833 Helix-turn-helix domain NIY04_09215 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NIY04_09215 PF00672 HAMP domain NIY04_09215 PF00512 His Kinase A (phospho-acceptor) domain NIY04_09215 PF16527 Two-component sensor protein CpxA, periplasmic domain NIY04_09220 PF00072 Response regulator receiver domain NIY04_09220 PF00486 Transcriptional regulatory protein, C terminal NIY04_09225 PF00529 HlyD membrane-fusion protein of T1SS NIY04_09225 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion NIY04_09230 PF00873 AcrB/AcrD/AcrF family NIY04_09235 PF00005 ABC transporter NIY04_09235 PF17755 UvrA DNA-binding domain NIY04_09235 PF17760 UvrA interaction domain NIY04_09310 PF16970 Type-1 fimbrial protein, A NIY04_09315 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain NIY04_09315 PF02753 Pili assembly chaperone PapD, C-terminal domain NIY04_09320 PF13954 PapC N-terminal domain NIY04_09320 PF13953 PapC C-terminal domain NIY04_09320 PF00577 Outer membrane usher protein NIY04_09335 PF00107 Zinc-binding dehydrogenase NIY04_09335 PF08240 Alcohol dehydrogenase GroES-like domain NIY04_09345 PF00199 Catalase NIY04_09360 PF13091 PLD-like domain NIY04_09375 PF01244 Membrane dipeptidase (Peptidase family M19) NIY04_09380 PF04055 Radical SAM superfamily NIY04_09380 PF13186 Iron-sulfur cluster-binding domain NIY04_09385 PF05402 Coenzyme PQQ synthesis protein D (PqqD) NIY04_09390 PF03070 TENA/THI-4/PQQC family NIY04_09395 PF12706 Beta-lactamase superfamily domain NIY04_09400 PF08042 PqqA family NIY04_09405 PF13090 Polyphosphate kinase C-terminal domain 2 NIY04_09405 PF17941 Polyphosphate kinase C-terminal domain 1 NIY04_09405 PF13089 Polyphosphate kinase N-terminal domain NIY04_09405 PF02503 Polyphosphate kinase middle domain NIY04_09410 PF00149 Calcineurin-like phosphoesterase NIY04_09420 PF00550 Phosphopantetheine attachment site NIY04_09420 PF00857 Isochorismatase family NIY04_09425 PF00106 short chain dehydrogenase NIY04_09430 PF00005 ABC transporter NIY04_09430 PF03459 TOBE domain NIY04_09435 PF00528 Binding-protein-dependent transport system inner membrane component NIY04_09445 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NIY04_09445 PF03459 TOBE domain NIY04_09450 PF00355 Rieske [2Fe-2S] domain NIY04_09450 PF00848 Ring hydroxylating alpha subunit (catalytic domain) NIY04_09455 PF00866 Ring hydroxylating beta subunit NIY04_09460 PF00970 Oxidoreductase FAD-binding domain NIY04_09460 PF00111 2Fe-2S iron-sulfur cluster binding domain NIY04_09460 PF00175 Oxidoreductase NAD-binding domain NIY04_09465 PF14525 AraC-binding-like domain NIY04_09465 PF12833 Helix-turn-helix domain NIY04_09475 PF01613 Flavin reductase like domain NIY04_09490 PF01738 Dienelactone hydrolase family NIY04_09495 PF07690 Major Facilitator Superfamily NIY04_09500 PF12833 Helix-turn-helix domain NIY04_09500 PF06719 AraC-type transcriptional regulator N-terminus NIY04_09520 PF00440 Bacterial regulatory proteins, tetR family NIY04_09545 PF03466 LysR substrate binding domain NIY04_09545 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NIY04_09550 PF01144 Coenzyme A transferase NIY04_09555 PF01144 Coenzyme A transferase NIY04_09560 PF02667 Short chain fatty acid transporter NIY04_09565 PF00108 Thiolase, N-terminal domain NIY04_09565 PF02803 Thiolase, C-terminal domain NIY04_09570 PF03466 LysR substrate binding domain NIY04_09570 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NIY04_09575 PF03466 LysR substrate binding domain NIY04_09575 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NIY04_09590 PF00206 Lyase NIY04_09590 PF10415 Fumarase C C-terminus NIY04_09595 PF07715 TonB-dependent Receptor Plug Domain NIY04_09595 PF00593 TonB dependent receptor NIY04_09600 PF00083 Sugar (and other) transporter NIY04_09615 PF00005 ABC transporter NIY04_09620 PF00528 Binding-protein-dependent transport system inner membrane component NIY04_09625 PF04069 Substrate binding domain of ABC-type glycine betaine transport system NIY04_09640 PF07702 UTRA domain NIY04_09640 PF00392 Bacterial regulatory proteins, gntR family NIY04_09645 PF02417 Chromate transporter NIY04_09650 PF02525 Flavodoxin-like fold NIY04_09655 PF01638 HxlR-like helix-turn-helix NIY04_09660 PF12833 Helix-turn-helix domain NIY04_09660 PF06445 GyrI-like small molecule binding domain NIY04_09675 PF01925 Sulfite exporter TauE/SafE NIY04_09690 PF04273 Putative phosphatase (DUF442) NIY04_09690 PF00753 Metallo-beta-lactamase superfamily NIY04_09695 PF00072 Response regulator receiver domain NIY04_09695 PF02954 Bacterial regulatory protein, Fis family NIY04_09695 PF00158 Sigma-54 interaction domain NIY04_09700 PF01062 Bestrophin, RFP-TM, chloride channel NIY04_09705 PF08240 Alcohol dehydrogenase GroES-like domain NIY04_09705 PF00107 Zinc-binding dehydrogenase NIY04_09710 PF00106 short chain dehydrogenase NIY04_09715 PF07992 Pyridine nucleotide-disulphide oxidoreductase NIY04_09715 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain NIY04_09720 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) NIY04_09720 PF02817 e3 binding domain NIY04_09720 PF00364 Biotin-requiring enzyme NIY04_09725 PF02779 Transketolase, pyrimidine binding domain NIY04_09725 PF02780 Transketolase, C-terminal domain NIY04_09730 PF00676 Dehydrogenase E1 component NIY04_09735 PF04055 Radical SAM superfamily NIY04_09750 PF08448 PAS fold NIY04_09750 PF00990 Diguanylate cyclase, GGDEF domain NIY04_09755 PF01264 Chorismate synthase NIY04_09760 PF05175 Methyltransferase small domain NIY04_09765 PF00291 Pyridoxal-phosphate dependent enzyme NIY04_09775 PF01434 Peptidase family M41 NIY04_09775 PF00004 ATPase family associated with various cellular activities (AAA) NIY04_09775 PF17862 AAA+ lid domain NIY04_09785 PF05166 YcgL domain NIY04_09805 PF00570 HRDC domain NIY04_09805 PF01612 3'-5' exonuclease NIY04_09810 PF02132 RecR protein NIY04_09810 PF13662 Toprim domain NIY04_09815 PF02575 YbaB/EbfC DNA-binding family NIY04_09825 PF01053 Cys/Met metabolism PLP-dependent enzyme NIY04_09830 PF00561 alpha/beta hydrolase fold NIY04_09835 PF08241 Methyltransferase domain NIY04_09865 PF01230 HIT domain NIY04_09900 PF00005 ABC transporter NIY04_09905 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion NIY04_09915 PF02684 Lipid-A-disaccharide synthetase NIY04_09920 PF07715 TonB-dependent Receptor Plug Domain NIY04_09920 PF00593 TonB dependent receptor NIY04_09940 PF01925 Sulfite exporter TauE/SafE NIY04_09945 PF00793 DAHP synthetase I family NIY04_09950 PF02654 Cobalamin-5-phosphate synthase NIY04_09960 PF00300 Histidine phosphatase superfamily (branch 1) NIY04_09965 PF02277 Phosphoribosyltransferase NIY04_09970 PF02283 Cobinamide kinase / cobinamide phosphate guanyltransferase NIY04_09980 PF13419 Haloacid dehalogenase-like hydrolase NIY04_10005 PF07715 TonB-dependent Receptor Plug Domain NIY04_10005 PF00593 TonB dependent receptor NIY04_10010 PF03737 Aldolase/RraA NIY04_10020 PF04183 IucA / IucC family NIY04_10020 PF06276 Ferric iron reductase FhuF-like transporter NIY04_10025 PF06276 Ferric iron reductase FhuF-like transporter NIY04_10025 PF04183 IucA / IucC family NIY04_10030 PF07690 Major Facilitator Superfamily NIY04_10035 PF13434 L-lysine 6-monooxygenase (NADPH-requiring) NIY04_10040 PF06276 Ferric iron reductase FhuF-like transporter NIY04_10040 PF04183 IucA / IucC family NIY04_10045 PF04073 Aminoacyl-tRNA editing domain NIY04_10055 PF03109 ABC1 family NIY04_10060 PF00441 Acyl-CoA dehydrogenase, C-terminal domain NIY04_10060 PF02770 Acyl-CoA dehydrogenase, middle domain NIY04_10060 PF02771 Acyl-CoA dehydrogenase, N-terminal domain NIY04_10065 PF02770 Acyl-CoA dehydrogenase, middle domain NIY04_10065 PF02771 Acyl-CoA dehydrogenase, N-terminal domain NIY04_10065 PF00441 Acyl-CoA dehydrogenase, C-terminal domain NIY04_10070 PF00487 Fatty acid desaturase NIY04_10075 PF12852 Cupin NIY04_10075 PF12833 Helix-turn-helix domain NIY04_10080 PF09312 SurA N-terminal domain NIY04_10080 PF00639 PPIC-type PPIASE domain NIY04_10085 PF00216 Bacterial DNA-binding protein NIY04_10100 PF02082 Transcriptional regulator NIY04_10105 PF00266 Aminotransferase class-V NIY04_10110 PF01592 NifU-like N terminal domain NIY04_10115 PF01521 Iron-sulphur cluster biosynthesis NIY04_10120 PF00226 DnaJ domain NIY04_10120 PF07743 HSCB C-terminal oligomerisation domain NIY04_10125 PF00012 Hsp70 protein NIY04_10130 PF00111 2Fe-2S iron-sulfur cluster binding domain NIY04_10135 PF00211 Adenylate and Guanylate cyclase catalytic domain NIY04_10145 PF02559 CarD-like/TRCF domain NIY04_10145 PF00270 DEAD/DEAH box helicase NIY04_10145 PF03461 TRCF domain NIY04_10145 PF17757 UvrB interaction domain NIY04_10145 PF00271 Helicase conserved C-terminal domain NIY04_10165 PF03737 Aldolase/RraA NIY04_10170 PF13460 NAD(P)H-binding NIY04_10175 PF01649 Ribosomal protein S20 NIY04_10185 PF00459 Inositol monophosphatase family NIY04_10200 PF00005 ABC transporter NIY04_10200 PF08352 Oligopeptide/dipeptide transporter, C-terminal region NIY04_10205 PF00528 Binding-protein-dependent transport system inner membrane component NIY04_10210 PF00528 Binding-protein-dependent transport system inner membrane component NIY04_10215 PF01432 Peptidase family M3 NIY04_10235 PF07715 TonB-dependent Receptor Plug Domain NIY04_10235 PF00593 TonB dependent receptor NIY04_10245 PF01618 MotA/TolQ/ExbB proton channel family NIY04_10250 PF02472 Biopolymer transport protein ExbD/TolR NIY04_10255 PF02472 Biopolymer transport protein ExbD/TolR NIY04_10265 PF01274 Malate synthase NIY04_10385 PF04860 Phage portal protein NIY04_10545 PF02899 Phage integrase, N-terminal SAM-like domain NIY04_10545 PF00589 Phage integrase family NIY04_10550 PF03969 AFG1-like ATPase NIY04_10560 PF00743 Flavin-binding monooxygenase-like NIY04_10570 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family NIY04_10580 PF00216 Bacterial DNA-binding protein NIY04_10585 PF00575 S1 RNA binding domain NIY04_10590 PF02224 Cytidylate kinase NIY04_10600 PF14437 MafB19-like deaminase NIY04_10610 PF03167 Uracil DNA glycosylase superfamily NIY04_10620 PF03934 Type II secretion system (T2SS), protein K NIY04_10625 PF11612 Type II secretion system (T2SS), protein J NIY04_10625 PF07963 Prokaryotic N-terminal methylation motif NIY04_10630 PF07963 Prokaryotic N-terminal methylation motif NIY04_10630 PF02501 Type II secretion system (T2SS), protein I NIY04_10645 PF01026 TatD related DNase NIY04_10655 PF09115 DNA polymerase III, delta subunit, C terminal NIY04_10660 PF02348 Cytidylyltransferase NIY04_10665 PF02606 Tetraacyldisaccharide-1-P 4'-kinase NIY04_10670 PF00664 ABC transporter transmembrane region NIY04_10670 PF00005 ABC transporter NIY04_10680 PF01618 MotA/TolQ/ExbB proton channel family NIY04_10685 PF17762 HTH domain found in ParB protein NIY04_10685 PF02195 ParB-like nuclease domain NIY04_10690 PF13614 AAA domain NIY04_10695 PF02527 rRNA small subunit methyltransferase G NIY04_10700 PF00483 Nucleotidyl transferase NIY04_10705 PF01636 Phosphotransferase enzyme family NIY04_10710 PF04453 LPS transport system D NIY04_10710 PF03968 OstA-like protein NIY04_10715 PF00639 PPIC-type PPIASE domain NIY04_10715 PF09312 SurA N-terminal domain NIY04_10720 PF01116 Fructose-bisphosphate aldolase class-II NIY04_10730 PF00162 Phosphoglycerate kinase NIY04_10740 PF02545 Maf-like protein NIY04_10745 PF08007 Cupin superfamily protein NIY04_10760 PF00375 Sodium:dicarboxylate symporter family NIY04_10765 PF06912 Protein of unknown function (DUF1275) NIY04_10770 PF09831 Uncharacterized protein conserved in bacteria (DUF2058) NIY04_10775 PF00664 ABC transporter transmembrane region NIY04_10775 PF00005 ABC transporter NIY04_10785 PF12833 Helix-turn-helix domain NIY04_10785 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term NIY04_10790 PF01597 Glycine cleavage H-protein NIY04_10795 PF02146 Sir2 family NIY04_10800 PF00474 Sodium:solute symporter family NIY04_10805 PF01037 Lrp/AsnC ligand binding domain NIY04_10810 PF00171 Aldehyde dehydrogenase family NIY04_10810 PF01619 Proline dehydrogenase NIY04_10810 PF14850 DNA-binding domain of Proline dehydrogenase NIY04_10810 PF18327 Proline utilization A proline dehydrogenase N-terminal domain NIY04_10815 PF04229 GrpB protein NIY04_10820 PF05958 tRNA (Uracil-5-)-methyltransferase NIY04_10830 PF09992 Phosphodiester glycosidase NIY04_10840 PF04264 YceI-like domain NIY04_10850 PF02779 Transketolase, pyrimidine binding domain NIY04_10850 PF02780 Transketolase, C-terminal domain NIY04_10850 PF00456 Transketolase, thiamine diphosphate binding domain NIY04_10855 PF02772 S-adenosylmethionine synthetase, central domain NIY04_10855 PF00438 S-adenosylmethionine synthetase, N-terminal domain NIY04_10855 PF02773 S-adenosylmethionine synthetase, C-terminal domain NIY04_10875 PF00905 Penicillin binding protein transpeptidase domain NIY04_10890 PF02075 Crossover junction endodeoxyribonuclease RuvC NIY04_10895 PF03853 YjeF-related protein N-terminus NIY04_10895 PF01256 Carbohydrate kinase NIY04_10900 PF08331 Domain of unknown function (DUF1730) NIY04_10905 PF06968 Biotin and Thiamin Synthesis associated domain NIY04_10905 PF04055 Radical SAM superfamily NIY04_10920 PF16970 Type-1 fimbrial protein, A NIY04_10925 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain NIY04_10925 PF02753 Pili assembly chaperone PapD, C-terminal domain NIY04_10930 PF13953 PapC C-terminal domain NIY04_10930 PF13954 PapC N-terminal domain NIY04_10930 PF00577 Outer membrane usher protein NIY04_10950 PF00892 EamA-like transporter family NIY04_10960 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin NIY04_10970 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NIY04_10970 PF03466 LysR substrate binding domain NIY04_10990 PF00440 Bacterial regulatory proteins, tetR family NIY04_11000 PF01709 Transcriptional regulator NIY04_11005 PF01037 Lrp/AsnC ligand binding domain NIY04_11015 PF00005 ABC transporter NIY04_11020 PF00528 Binding-protein-dependent transport system inner membrane component NIY04_11025 PF00528 Binding-protein-dependent transport system inner membrane component NIY04_11040 PF02771 Acyl-CoA dehydrogenase, N-terminal domain NIY04_11040 PF08028 Acyl-CoA dehydrogenase, C-terminal domain NIY04_11050 PF00296 Luciferase-like monooxygenase NIY04_11055 PF03180 NLPA lipoprotein NIY04_11060 PF03180 NLPA lipoprotein NIY04_11065 PF00005 ABC transporter NIY04_11065 PF09383 NIL domain NIY04_11070 PF00528 Binding-protein-dependent transport system inner membrane component NIY04_11075 PF06071 Protein of unknown function (DUF933) NIY04_11075 PF01926 50S ribosome-binding GTPase NIY04_11100 PF03591 AzlC protein NIY04_11105 PF05437 Branched-chain amino acid transport protein (AzlD) NIY04_11115 PF02222 ATP-grasp domain NIY04_11120 PF01966 HD domain NIY04_11120 PF01909 Nucleotidyltransferase domain NIY04_11120 PF08335 GlnD PII-uridylyltransferase NIY04_11125 PF00155 Aminotransferase class I and II NIY04_11135 PF12852 Cupin NIY04_11135 PF12833 Helix-turn-helix domain NIY04_11140 PF00255 Glutathione peroxidase NIY04_11145 PF01641 SelR domain NIY04_11150 PF00155 Aminotransferase class I and II NIY04_11155 PF00375 Sodium:dicarboxylate symporter family NIY04_11160 PF00710 Asparaginase, N-terminal NIY04_11160 PF17763 Glutaminase/Asparaginase C-terminal domain NIY04_11165 PF14579 Helix-hairpin-helix motif NIY04_11165 PF02811 PHP domain NIY04_11165 PF01336 OB-fold nucleic acid binding domain NIY04_11165 PF07733 Bacterial DNA polymerase III alpha NTPase domain NIY04_11165 PF17657 Bacterial DNA polymerase III alpha subunit finger domain NIY04_11170 PF00588 SpoU rRNA Methylase family NIY04_11175 PF00132 Bacterial transferase hexapeptide (six repeats) NIY04_11190 PF07992 Pyridine nucleotide-disulphide oxidoreductase NIY04_11190 PF13192 Thioredoxin domain NIY04_11205 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NIY04_11205 PF03466 LysR substrate binding domain NIY04_11210 PF01758 Sodium Bile acid symporter family NIY04_11215 PF01022 Bacterial regulatory protein, arsR family NIY04_11220 PF03960 ArsC family NIY04_11230 PF13382 Adenine deaminase C-terminal domain NIY04_11230 PF01979 Amidohydrolase family NIY04_11240 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NIY04_11240 PF03466 LysR substrate binding domain NIY04_11250 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin NIY04_11255 PF01177 Asp/Glu/Hydantoin racemase NIY04_11260 PF02668 Taurine catabolism dioxygenase TauD, TfdA family NIY04_11265 PF00528 Binding-protein-dependent transport system inner membrane component NIY04_11270 PF00005 ABC transporter NIY04_11275 PF04069 Substrate binding domain of ABC-type glycine betaine transport system NIY04_11285 PF00083 Sugar (and other) transporter NIY04_11290 PF00296 Luciferase-like monooxygenase NIY04_11305 PF01654 Cytochrome bd terminal oxidase subunit I NIY04_11310 PF02322 Cytochrome bd terminal oxidase subunit II NIY04_11320 PF00392 Bacterial regulatory proteins, gntR family NIY04_11320 PF00155 Aminotransferase class I and II NIY04_11325 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NIY04_11325 PF03466 LysR substrate binding domain NIY04_11340 PF00698 Acyl transferase domain NIY04_11345 PF10620 Phosphoribosyl-dephospho-CoA transferase MdcG NIY04_11355 PF01039 Carboxyl transferase domain NIY04_11360 PF06857 Malonate decarboxylase delta subunit (MdcD) NIY04_11365 PF01874 ATP:dephospho-CoA triphosphoribosyl transferase NIY04_11370 PF16957 Malonate decarboxylase, alpha subunit, transporter NIY04_11375 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NIY04_11375 PF03466 LysR substrate binding domain NIY04_11385 PF07690 Major Facilitator Superfamily NIY04_11400 PF00392 Bacterial regulatory proteins, gntR family NIY04_11405 PF04172 LrgB-like family NIY04_11410 PF03788 LrgA family NIY04_11415 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NIY04_11415 PF03466 LysR substrate binding domain NIY04_11420 PF14834 Glutathione S-transferase, C-terminal domain NIY04_11420 PF02798 Glutathione S-transferase, N-terminal domain NIY04_11425 PF02798 Glutathione S-transferase, N-terminal domain NIY04_11430 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NIY04_11430 PF03466 LysR substrate binding domain NIY04_11440 PF00581 Rhodanese-like domain NIY04_11445 PF00132 Bacterial transferase hexapeptide (six repeats) NIY04_11455 PF00266 Aminotransferase class-V NIY04_11465 PF01810 LysE type translocator NIY04_11470 PF03466 LysR substrate binding domain NIY04_11470 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NIY04_11480 PF00497 Bacterial extracellular solute-binding proteins, family 3 NIY04_11485 PF00497 Bacterial extracellular solute-binding proteins, family 3 NIY04_11490 PF00005 ABC transporter NIY04_11495 PF00528 Binding-protein-dependent transport system inner membrane component NIY04_11500 PF00528 Binding-protein-dependent transport system inner membrane component NIY04_11515 PF00072 Response regulator receiver domain NIY04_11520 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NIY04_11520 PF00512 His Kinase A (phospho-acceptor) domain NIY04_11520 PF09308 LuxQ, periplasmic NIY04_11520 PF00072 Response regulator receiver domain NIY04_11530 PF01037 Lrp/AsnC ligand binding domain NIY04_11530 PF13404 AsnC-type helix-turn-helix domain NIY04_11540 PF00717 Peptidase S24-like NIY04_11565 PF00199 Catalase NIY04_11565 PF18011 C-terminal domain found in long catalases NIY04_11565 PF06628 Catalase-related immune-responsive NIY04_11575 PF02464 Competence-damaged protein NIY04_11575 PF18146 Damage-inducible protein CinA KH domain NIY04_11575 PF00994 Probable molybdopterin binding domain NIY04_11610 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NIY04_11610 PF03466 LysR substrate binding domain NIY04_11630 PF00501 AMP-binding enzyme NIY04_11630 PF13193 AMP-binding enzyme C-terminal domain NIY04_11635 PF00440 Bacterial regulatory proteins, tetR family NIY04_11640 PF02771 Acyl-CoA dehydrogenase, N-terminal domain NIY04_11640 PF02770 Acyl-CoA dehydrogenase, middle domain NIY04_11640 PF00441 Acyl-CoA dehydrogenase, C-terminal domain NIY04_11645 PF01039 Carboxyl transferase domain NIY04_11650 PF00378 Enoyl-CoA hydratase/isomerase NIY04_11655 PF02785 Biotin carboxylase C-terminal domain NIY04_11655 PF00364 Biotin-requiring enzyme NIY04_11655 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain NIY04_11655 PF18140 Propionyl-coenzyme A carboxylase BT domain NIY04_11655 PF00289 Biotin carboxylase, N-terminal domain NIY04_11660 PF00682 HMGL-like NIY04_11665 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NIY04_11665 PF03466 LysR substrate binding domain NIY04_11680 PF01810 LysE type translocator NIY04_11685 PF13419 Haloacid dehalogenase-like hydrolase NIY04_11690 PF00266 Aminotransferase class-V NIY04_11695 PF01266 FAD dependent oxidoreductase NIY04_11700 PF00528 Binding-protein-dependent transport system inner membrane component NIY04_11705 PF00005 ABC transporter NIY04_11705 PF08402 TOBE domain NIY04_11715 PF00392 Bacterial regulatory proteins, gntR family NIY04_11715 PF07702 UTRA domain NIY04_11720 PF00842 Alanine racemase, C-terminal domain NIY04_11720 PF01168 Alanine racemase, N-terminal domain NIY04_11725 PF01494 FAD binding domain NIY04_11730 PF09339 IclR helix-turn-helix domain NIY04_11730 PF01614 Bacterial transcriptional regulator NIY04_11735 PF02525 Flavodoxin-like fold NIY04_11740 PF03466 LysR substrate binding domain NIY04_11740 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NIY04_11745 PF01292 Prokaryotic cytochrome b561 NIY04_11750 PF00199 Catalase NIY04_11785 PF03061 Thioesterase superfamily NIY04_11790 PF00132 Bacterial transferase hexapeptide (six repeats) NIY04_11795 PF08223 PaaX-like protein C-terminal domain NIY04_11795 PF07848 PaaX-like protein NIY04_11800 PF14535 AMP-binding enzyme C-terminal domain NIY04_11800 PF00501 AMP-binding enzyme NIY04_11805 PF02803 Thiolase, C-terminal domain NIY04_11805 PF00108 Thiolase, N-terminal domain NIY04_11810 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain NIY04_11810 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain NIY04_11810 PF18321 3-hydroxybutyryl-CoA dehydrogenase reduced Rossmann-fold domain NIY04_11815 PF00378 Enoyl-CoA hydratase/isomerase NIY04_11820 PF00378 Enoyl-CoA hydratase/isomerase NIY04_11825 PF00970 Oxidoreductase FAD-binding domain NIY04_11825 PF00111 2Fe-2S iron-sulfur cluster binding domain NIY04_11825 PF00175 Oxidoreductase NAD-binding domain NIY04_11830 PF01883 Iron-sulfur cluster assembly protein NIY04_11835 PF05138 Phenylacetic acid catabolic protein NIY04_11840 PF06243 Phenylacetic acid degradation B NIY04_11845 PF05138 Phenylacetic acid catabolic protein NIY04_11850 PF00171 Aldehyde dehydrogenase family NIY04_11850 PF01575 MaoC like domain NIY04_11855 PF03313 Serine dehydratase alpha chain NIY04_11855 PF03315 Serine dehydratase beta chain NIY04_11860 PF13520 Amino acid permease NIY04_11865 PF00171 Aldehyde dehydrogenase family NIY04_11870 PF00083 Sugar (and other) transporter NIY04_11880 PF04324 BFD-like [2Fe-2S] binding domain NIY04_11880 PF07992 Pyridine nucleotide-disulphide oxidoreductase NIY04_11890 PF01266 FAD dependent oxidoreductase NIY04_11895 PF05544 Proline racemase NIY04_11900 PF00392 Bacterial regulatory proteins, gntR family NIY04_11910 PF00701 Dihydrodipicolinate synthetase family NIY04_11920 PF00376 MerR family regulatory protein NIY04_11920 PF09278 MerR, DNA binding NIY04_11930 PF02677 Epoxyqueuosine reductase QueH NIY04_11945 PF07690 Major Facilitator Superfamily NIY04_11950 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region NIY04_11960 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NIY04_11960 PF03466 LysR substrate binding domain NIY04_11980 PF05936 Bacterial Type VI secretion, VC_A0110, EvfL, ImpJ, VasE NIY04_11985 PF06812 ImpA, N-terminal, type VI secretion system NIY04_11990 PF00004 ATPase family associated with various cellular activities (AAA) NIY04_11990 PF07724 AAA domain (Cdc48 subfamily) NIY04_11990 PF17871 AAA lid domain NIY04_11990 PF10431 C-terminal, D2-small domain, of ClpB protein NIY04_12005 PF00691 OmpA family NIY04_12005 PF01389 OmpA-like transmembrane domain NIY04_12015 PF06744 Type VI secretion protein IcmF C-terminal NIY04_12015 PF06761 Intracellular multiplication and human macrophage-killing NIY04_12015 PF14331 ImcF-related N-terminal domain NIY04_12030 PF05947 Type VI secretion system, TssF NIY04_12045 PF05943 Type VI secretion protein, EvpB/VC_A0108, tail sheath NIY04_12060 PF03781 Sulfatase-modifying factor enzyme 1 NIY04_12070 PF13296 Putative type VI secretion system Rhs element Vgr NIY04_12070 PF04717 Type VI secretion system, phage-baseplate injector NIY04_12070 PF10106 Uncharacterized protein conserved in bacteria (DUF2345) NIY04_12085 PF00005 ABC transporter NIY04_12090 PF00497 Bacterial extracellular solute-binding proteins, family 3 NIY04_12095 PF01425 Amidase NIY04_12100 PF08753 NikR C terminal nickel binding domain NIY04_12100 PF01402 Ribbon-helix-helix protein, copG family NIY04_12120 PF01638 HxlR-like helix-turn-helix NIY04_12125 PF02525 Flavodoxin-like fold NIY04_12130 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain NIY04_12130 PF02785 Biotin carboxylase C-terminal domain NIY04_12130 PF00289 Biotin carboxylase, N-terminal domain NIY04_12145 PF00107 Zinc-binding dehydrogenase NIY04_12145 PF13823 Alcohol dehydrogenase GroES-associated NIY04_12145 PF08240 Alcohol dehydrogenase GroES-like domain NIY04_12155 PF00440 Bacterial regulatory proteins, tetR family NIY04_12160 PF00684 DnaJ central domain NIY04_12160 PF01556 DnaJ C terminal domain NIY04_12160 PF00226 DnaJ domain NIY04_12165 PF00654 Voltage gated chloride channel NIY04_12170 PF02785 Biotin carboxylase C-terminal domain NIY04_12170 PF00289 Biotin carboxylase, N-terminal domain NIY04_12170 PF00364 Biotin-requiring enzyme NIY04_12170 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain NIY04_12180 PF07286 Protein of unknown function (DUF1445) NIY04_12185 PF03746 LamB/YcsF family NIY04_12190 PF01566 Natural resistance-associated macrophage protein NIY04_12195 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NIY04_12195 PF03466 LysR substrate binding domain NIY04_12210 PF13419 Haloacid dehalogenase-like hydrolase NIY04_12230 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain NIY04_12230 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain NIY04_12250 PF07690 Major Facilitator Superfamily NIY04_12270 PF01544 CorA-like Mg2+ transporter protein NIY04_12275 PF03279 Bacterial lipid A biosynthesis acyltransferase NIY04_12280 PF03707 Bacterial signalling protein N terminal repeat NIY04_12280 PF00990 Diguanylate cyclase, GGDEF domain NIY04_12280 PF00563 EAL domain NIY04_12285 PF00892 EamA-like transporter family NIY04_12290 PF01037 Lrp/AsnC ligand binding domain NIY04_12295 PF01624 MutS domain I NIY04_12295 PF05188 MutS domain II NIY04_12295 PF05192 MutS domain III NIY04_12295 PF05190 MutS family domain IV NIY04_12295 PF00488 MutS domain V NIY04_12305 PF00037 4Fe-4S binding domain NIY04_12305 PF11953 Domain of unknown function (DUF3470) NIY04_12315 PF01596 O-methyltransferase NIY04_12325 PF00132 Bacterial transferase hexapeptide (six repeats) NIY04_12330 PF01205 Uncharacterized protein family UPF0029 NIY04_12340 PF00664 ABC transporter transmembrane region NIY04_12340 PF03412 Peptidase C39 family NIY04_12340 PF00005 ABC transporter NIY04_12345 PF02321 Outer membrane efflux protein NIY04_12350 PF00005 ABC transporter NIY04_12350 PF12399 Branched-chain amino acid ATP-binding cassette transporter NIY04_12355 PF03968 OstA-like protein NIY04_12370 PF00571 CBS domain NIY04_12370 PF01380 SIS domain NIY04_12375 PF01406 tRNA synthetases class I (C) catalytic domain NIY04_12375 PF09190 DALR domain NIY04_12400 PF01638 HxlR-like helix-turn-helix NIY04_12405 PF07690 Major Facilitator Superfamily NIY04_12430 PF03807 NADP oxidoreductase coenzyme F420-dependent NIY04_12430 PF14748 Pyrroline-5-carboxylate reductase dimerisation NIY04_12440 PF00313 'Cold-shock' DNA-binding domain NIY04_12445 PF01810 LysE type translocator NIY04_12475 PF02601 Exonuclease VII, large subunit NIY04_12475 PF13742 OB-fold nucleic acid binding domain NIY04_12510 PF00376 MerR family regulatory protein NIY04_12510 PF09278 MerR, DNA binding NIY04_12515 PF00403 Heavy-metal-associated domain NIY04_12520 PF00403 Heavy-metal-associated domain NIY04_12525 PF03466 LysR substrate binding domain NIY04_12525 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NIY04_12530 PF00355 Rieske [2Fe-2S] domain NIY04_12530 PF00848 Ring hydroxylating alpha subunit (catalytic domain) NIY04_12535 PF00866 Ring hydroxylating beta subunit NIY04_12540 PF00970 Oxidoreductase FAD-binding domain NIY04_12540 PF00111 2Fe-2S iron-sulfur cluster binding domain NIY04_12540 PF00175 Oxidoreductase NAD-binding domain NIY04_12545 PF00106 short chain dehydrogenase NIY04_12550 PF03594 Benzoate membrane transport protein NIY04_12555 PF07690 Major Facilitator Superfamily NIY04_12565 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III NIY04_12565 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal NIY04_12570 PF00270 DEAD/DEAH box helicase NIY04_12570 PF11898 Domain of unknown function (DUF3418) NIY04_12570 PF04408 Helicase associated domain (HA2) NIY04_12570 PF00271 Helicase conserved C-terminal domain NIY04_12570 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold NIY04_12575 PF00578 AhpC/TSA family NIY04_12575 PF10417 C-terminal domain of 1-Cys peroxiredoxin NIY04_12595 PF13192 Thioredoxin domain NIY04_12595 PF07992 Pyridine nucleotide-disulphide oxidoreductase NIY04_12605 PF00043 Glutathione S-transferase, C-terminal domain NIY04_12605 PF02798 Glutathione S-transferase, N-terminal domain NIY04_12615 PF02390 Putative methyltransferase NIY04_12620 PF00043 Glutathione S-transferase, C-terminal domain NIY04_12620 PF13417 Glutathione S-transferase, N-terminal domain NIY04_12630 PF13488 Glycine zipper NIY04_12630 PF00691 OmpA family NIY04_12635 PF01979 Amidohydrolase family NIY04_12640 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain NIY04_12640 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain NIY04_12650 PF01170 Putative RNA methylase family UPF0020 NIY04_12650 PF02926 THUMP domain NIY04_12650 PF10672 S-adenosylmethionine-dependent methyltransferase NIY04_12665 PF17871 AAA lid domain NIY04_12665 PF07724 AAA domain (Cdc48 subfamily) NIY04_12665 PF00004 ATPase family associated with various cellular activities (AAA) NIY04_12665 PF10431 C-terminal, D2-small domain, of ClpB protein NIY04_12665 PF02861 Clp amino terminal domain, pathogenicity island component NIY04_12680 PF02566 OsmC-like protein NIY04_12690 PF13545 Crp-like helix-turn-helix domain NIY04_12690 PF00027 Cyclic nucleotide-binding domain NIY04_12695 PF00248 Aldo/keto reductase family NIY04_12710 PF00709 Adenylosuccinate synthetase NIY04_12715 PF13393 Histidyl-tRNA synthetase NIY04_12720 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain NIY04_12720 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain NIY04_12725 PF02272 DHHA1 domain NIY04_12725 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain NIY04_12725 PF01411 tRNA synthetases class II (A) NIY04_12730 PF00589 Phage integrase family NIY04_12730 PF13356 Arm DNA-binding domain NIY04_12745 PF00717 Peptidase S24-like NIY04_12750 PF11799 impB/mucB/samB family C-terminal domain NIY04_12750 PF13438 Domain of unknown function (DUF4113) NIY04_12750 PF00817 impB/mucB/samB family NIY04_12865 PF09979 Uncharacterized protein conserved in bacteria (DUF2213) NIY04_12885 PF06381 Protein of unknown function (DUF1073) NIY04_12955 PF00145 C-5 cytosine-specific DNA methylase NIY04_12970 PF15943 Putative antitoxin of bacterial toxin-antitoxin system, YdaS/YdaT NIY04_12975 PF00717 Peptidase S24-like NIY04_12975 PF01726 LexA DNA binding domain NIY04_13025 PF00696 Amino acid kinase family NIY04_13025 PF01842 ACT domain NIY04_13025 PF13840 ACT domain NIY04_13030 PF02599 Global regulator protein family NIY04_13035 PF01351 Ribonuclease HII NIY04_13045 PF01292 Prokaryotic cytochrome b561 NIY04_13050 PF00962 Adenosine/AMP deaminase NIY04_13055 PF00860 Permease family NIY04_13065 PF00743 Flavin-binding monooxygenase-like NIY04_13070 PF00106 short chain dehydrogenase NIY04_13080 PF02678 Pirin NIY04_13080 PF17954 Quercetinase C-terminal cupin domain NIY04_13085 PF00440 Bacterial regulatory proteins, tetR family NIY04_13085 PF17932 Tetracyclin repressor-like, C-terminal domain NIY04_13095 PF00106 short chain dehydrogenase NIY04_13100 PF00743 Flavin-binding monooxygenase-like NIY04_13105 PF04072 Leucine carboxyl methyltransferase NIY04_13110 PF12833 Helix-turn-helix domain NIY04_13110 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term NIY04_13115 PF00743 Flavin-binding monooxygenase-like NIY04_13120 PF00106 short chain dehydrogenase NIY04_13125 PF07859 alpha/beta hydrolase fold NIY04_13130 PF05199 GMC oxidoreductase NIY04_13135 PF03573 outer membrane porin, OprD family NIY04_13140 PF07690 Major Facilitator Superfamily NIY04_13145 PF00355 Rieske [2Fe-2S] domain NIY04_13150 PF00111 2Fe-2S iron-sulfur cluster binding domain NIY04_13150 PF00175 Oxidoreductase NAD-binding domain NIY04_13165 PF07690 Major Facilitator Superfamily NIY04_13170 PF00378 Enoyl-CoA hydratase/isomerase NIY04_13175 PF00171 Aldehyde dehydrogenase family NIY04_13185 PF02771 Acyl-CoA dehydrogenase, N-terminal domain NIY04_13185 PF02770 Acyl-CoA dehydrogenase, middle domain NIY04_13185 PF00441 Acyl-CoA dehydrogenase, C-terminal domain NIY04_13190 PF03573 outer membrane porin, OprD family NIY04_13205 PF07519 Tannase and feruloyl esterase NIY04_13210 PF07729 FCD domain NIY04_13210 PF00392 Bacterial regulatory proteins, gntR family NIY04_13215 PF00171 Aldehyde dehydrogenase family NIY04_13220 PF00701 Dihydrodipicolinate synthetase family NIY04_13225 PF13378 Enolase C-terminal domain-like NIY04_13230 PF07690 Major Facilitator Superfamily NIY04_13235 PF08666 SAF domain NIY04_13235 PF04295 D-galactarate dehydratase / Altronate hydrolase, C terminus NIY04_13240 PF00892 EamA-like transporter family NIY04_13245 PF12833 Helix-turn-helix domain NIY04_13245 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term NIY04_13250 PF00171 Aldehyde dehydrogenase family NIY04_13270 PF00324 Amino acid permease NIY04_13275 PF04958 Arginine N-succinyltransferase beta subunit NIY04_13280 PF00202 Aminotransferase class-III NIY04_13290 PF00171 Aldehyde dehydrogenase family NIY04_13300 PF00392 Bacterial regulatory proteins, gntR family NIY04_13300 PF07729 FCD domain NIY04_13310 PF00324 Amino acid permease NIY04_13315 PF01266 FAD dependent oxidoreductase NIY04_13320 PF00324 Amino acid permease NIY04_13345 PF03180 NLPA lipoprotein NIY04_13350 PF01494 FAD binding domain NIY04_13365 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NIY04_13365 PF03466 LysR substrate binding domain NIY04_13370 PF01266 FAD dependent oxidoreductase NIY04_13375 PF01042 Endoribonuclease L-PSP NIY04_13420 PF07992 Pyridine nucleotide-disulphide oxidoreductase NIY04_13420 PF00724 NADH:flavin oxidoreductase / NADH oxidase family NIY04_13430 PF00764 Arginosuccinate synthase NIY04_13435 PF00563 EAL domain NIY04_13435 PF01590 GAF domain NIY04_13435 PF00990 Diguanylate cyclase, GGDEF domain NIY04_13435 PF00360 Phytochrome region NIY04_13440 PF01979 Amidohydrolase family NIY04_13445 PF00929 Exonuclease NIY04_13455 PF00593 TonB dependent receptor NIY04_13455 PF07715 TonB-dependent Receptor Plug Domain NIY04_13460 PF00724 NADH:flavin oxidoreductase / NADH oxidase family NIY04_13460 PF07992 Pyridine nucleotide-disulphide oxidoreductase NIY04_13465 PF00005 ABC transporter NIY04_13465 PF08352 Oligopeptide/dipeptide transporter, C-terminal region NIY04_13470 PF00528 Binding-protein-dependent transport system inner membrane component NIY04_13470 PF12911 N-terminal TM domain of oligopeptide transport permease C NIY04_13475 PF00528 Binding-protein-dependent transport system inner membrane component NIY04_13480 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle NIY04_13485 PF01476 LysM domain NIY04_13485 PF01464 Transglycosylase SLT domain NIY04_13485 PF01464 Transglycosylase SLT domain NIY04_13485 PF01476 LysM domain NIY04_13490 PF00929 Exonuclease NIY04_13500 PF00293 NUDIX domain NIY04_13500 PF09297 NADH pyrophosphatase zinc ribbon domain NIY04_13510 PF04972 BON domain NIY04_13515 PF02021 Uncharacterised protein family UPF0102 NIY04_13520 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases NIY04_13530 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NIY04_13530 PF03466 LysR substrate binding domain NIY04_13535 PF01810 LysE type translocator NIY04_13545 PF13411 MerR HTH family regulatory protein NIY04_13555 PF01494 FAD binding domain NIY04_13560 PF01494 FAD binding domain NIY04_13565 PF05195 Aminopeptidase P, N-terminal domain NIY04_13565 PF00557 Metallopeptidase family M24 NIY04_13605 PF01812 5-formyltetrahydrofolate cyclo-ligase family NIY04_13610 PF04355 SmpA / OmlA family NIY04_13610 PF00691 OmpA family NIY04_13615 PF05658 Head domain of trimeric autotransporter adhesin NIY04_13615 PF03895 YadA-like membrane anchor domain NIY04_13615 PF13018 Extended Signal Peptide of Type V secretion system NIY04_13615 PF05662 Coiled stalk of trimeric autotransporter adhesin NIY04_13620 PF00004 ATPase family associated with various cellular activities (AAA) NIY04_13620 PF05362 Lon protease (S16) C-terminal proteolytic domain NIY04_13620 PF02190 ATP-dependent protease La (LON) substrate-binding domain NIY04_13625 PF02590 Predicted SPOUT methyltransferase NIY04_13630 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase NIY04_13640 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase NIY04_13640 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain NIY04_13645 PF04060 Putative Fe-S cluster NIY04_13650 PF00730 HhH-GPD superfamily base excision DNA repair protein NIY04_13650 PF10576 Iron-sulfur binding domain of endonuclease III NIY04_13650 PF00633 Helix-hairpin-helix motif NIY04_13660 PF05191 Adenylate kinase, active site lid NIY04_13675 PF03717 Penicillin-binding Protein dimerisation domain NIY04_13675 PF00905 Penicillin binding protein transpeptidase domain NIY04_13690 PF02492 CobW/HypB/UreG, nucleotide-binding domain NIY04_13695 PF01730 UreF NIY04_13700 PF05194 UreE urease accessory protein, C-terminal domain NIY04_13700 PF02814 UreE urease accessory protein, N-terminal domain NIY04_13705 PF01979 Amidohydrolase family NIY04_13705 PF00449 Urease alpha-subunit, N-terminal domain NIY04_13715 PF00699 Urease beta subunit NIY04_13720 PF00547 Urease, gamma subunit NIY04_13725 PF01774 UreD urease accessory protein NIY04_13740 PF00463 Isocitrate lyase family NIY04_13745 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NIY04_13745 PF03466 LysR substrate binding domain NIY04_13750 PF01595 Cyclin M transmembrane N-terminal domain NIY04_13750 PF03471 Transporter associated domain NIY04_13750 PF00571 CBS domain NIY04_13755 PF03600 Citrate transporter NIY04_13770 PF00009 Elongation factor Tu GTP binding domain NIY04_13775 PF01507 Phosphoadenosine phosphosulfate reductase family NIY04_13785 PF14052 Capsule assembly protein Wzi NIY04_13790 PF00152 tRNA synthetases class II (D, K and N) NIY04_13790 PF01336 OB-fold nucleic acid binding domain NIY04_13805 PF00301 Rubredoxin NIY04_13810 PF07992 Pyridine nucleotide-disulphide oxidoreductase NIY04_13810 PF18113 Rubredoxin binding C-terminal domain NIY04_13815 PF00561 alpha/beta hydrolase fold NIY04_13820 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NIY04_13820 PF03466 LysR substrate binding domain NIY04_13835 PF02503 Polyphosphate kinase middle domain NIY04_13835 PF13090 Polyphosphate kinase C-terminal domain 2 NIY04_13835 PF17941 Polyphosphate kinase C-terminal domain 1 NIY04_13835 PF13089 Polyphosphate kinase N-terminal domain NIY04_13840 PF00912 Transglycosylase NIY04_13845 PF01694 Rhomboid family NIY04_13855 PF00005 ABC transporter NIY04_13860 PF13472 GDSL-like Lipase/Acylhydrolase family NIY04_13865 PF00484 Carbonic anhydrase NIY04_13870 PF00561 alpha/beta hydrolase fold NIY04_13880 PF07715 TonB-dependent Receptor Plug Domain NIY04_13880 PF00593 TonB dependent receptor NIY04_13885 PF01521 Iron-sulphur cluster biosynthesis NIY04_13885 PF01106 NifU-like domain NIY04_13895 PF00884 Sulfatase NIY04_13900 PF03781 Sulfatase-modifying factor enzyme 1 NIY04_13915 PF00291 Pyridoxal-phosphate dependent enzyme NIY04_13920 PF01384 Phosphate transporter family NIY04_13930 PF02310 B12 binding domain NIY04_13930 PF02607 B12 binding domain NIY04_13930 PF02965 Vitamin B12 dependent methionine synthase, activation domain NIY04_13930 PF00809 Pterin binding enzyme NIY04_13930 PF02574 Homocysteine S-methyltransferase NIY04_13935 PF02779 Transketolase, pyrimidine binding domain NIY04_13935 PF02780 Transketolase, C-terminal domain NIY04_13940 PF00456 Transketolase, thiamine diphosphate binding domain NIY04_13945 PF07690 Major Facilitator Superfamily NIY04_13955 PF03466 LysR substrate binding domain NIY04_13955 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NIY04_13965 PF01263 Aldose 1-epimerase NIY04_13975 PF07690 Major Facilitator Superfamily NIY04_13980 PF02311 AraC-like ligand binding domain NIY04_13980 PF12833 Helix-turn-helix domain NIY04_13985 PF04960 Glutaminase NIY04_13990 PF01327 Polypeptide deformylase NIY04_13995 PF07690 Major Facilitator Superfamily NIY04_14005 PF00205 Thiamine pyrophosphate enzyme, central domain NIY04_14005 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain NIY04_14005 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain NIY04_14010 PF00171 Aldehyde dehydrogenase family NIY04_14015 PF01958 Domain of unknown function DUF108 NIY04_14015 PF03447 Homoserine dehydrogenase, NAD binding domain NIY04_14025 PF12697 Alpha/beta hydrolase family NIY04_14035 PF07690 Major Facilitator Superfamily NIY04_14040 PF07992 Pyridine nucleotide-disulphide oxidoreductase NIY04_14040 PF14759 Reductase C-terminal NIY04_14045 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily NIY04_14055 PF00355 Rieske [2Fe-2S] domain NIY04_14065 PF00355 Rieske [2Fe-2S] domain NIY04_14070 PF09339 IclR helix-turn-helix domain NIY04_14070 PF01614 Bacterial transcriptional regulator NIY04_14085 PF00378 Enoyl-CoA hydratase/isomerase NIY04_14095 PF00535 Glycosyl transferase family 2 NIY04_14100 PF14883 Hypothetical glycosyl hydrolase family 13 NIY04_14100 PF01522 Polysaccharide deacetylase NIY04_14105 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase NIY04_14110 PF07152 YaeQ protein NIY04_14115 PF00375 Sodium:dicarboxylate symporter family NIY04_14120 PF02492 CobW/HypB/UreG, nucleotide-binding domain NIY04_14120 PF07683 Cobalamin synthesis protein cobW C-terminal domain NIY04_14130 PF03061 Thioesterase superfamily NIY04_14140 PF02028 BCCT, betaine/carnitine/choline family transporter NIY04_14145 PF02028 BCCT, betaine/carnitine/choline family transporter NIY04_14150 PF00440 Bacterial regulatory proteins, tetR family NIY04_14150 PF13977 BetI-type transcriptional repressor, C-terminal NIY04_14155 PF00171 Aldehyde dehydrogenase family NIY04_14160 PF05199 GMC oxidoreductase NIY04_14160 PF00732 GMC oxidoreductase NIY04_14165 PF06039 Malate:quinone oxidoreductase (Mqo) NIY04_14175 PF02574 Homocysteine S-methyltransferase NIY04_14180 PF13520 Amino acid permease NIY04_14205 PF00701 Dihydrodipicolinate synthetase family NIY04_14210 PF00083 Sugar (and other) transporter NIY04_14255 PF07690 Major Facilitator Superfamily NIY04_14260 PF13533 Biotin-lipoyl like NIY04_14265 PF03061 Thioesterase superfamily NIY04_14270 PF00490 Delta-aminolevulinic acid dehydratase NIY04_14275 PF01266 FAD dependent oxidoreductase NIY04_14280 PF08338 Domain of unknown function (DUF1731) NIY04_14280 PF01370 NAD dependent epimerase/dehydratase family NIY04_14300 PF12320 Type 5 capsule protein repressor C-terminal domain NIY04_14300 PF00149 Calcineurin-like phosphoesterase NIY04_14310 PF01168 Alanine racemase, N-terminal domain NIY04_14315 PF00437 Type II/IV secretion system protein NIY04_14320 PF00437 Type II/IV secretion system protein NIY04_14325 PF01475 Ferric uptake regulator family NIY04_14330 PF04355 SmpA / OmlA family NIY04_14335 PF03658 RnfH family Ubiquitin NIY04_14345 PF01814 Hemerythrin HHE cation binding domain NIY04_14350 PF13230 Glutamine amidotransferases class-II NIY04_14360 PF00696 Amino acid kinase family NIY04_14365 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II NIY04_14365 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III NIY04_14365 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain NIY04_14365 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I NIY04_14370 PF00692 dUTPase NIY04_14375 PF00580 UvrD/REP helicase N-terminal domain NIY04_14375 PF13361 UvrD-like helicase C-terminal domain NIY04_14380 PF13488 Glycine zipper NIY04_14380 PF00691 OmpA family NIY04_14385 PF01553 Acyltransferase NIY04_14395 PF03775 Septum formation inhibitor MinC, C-terminal domain NIY04_14400 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain NIY04_14405 PF03776 Septum formation topological specificity factor MinE NIY04_14415 PF01810 LysE type translocator NIY04_14420 PF13491 4TM region of DNA translocase FtsK/SpoIIIE NIY04_14420 PF17854 FtsK alpha domain NIY04_14420 PF09397 Ftsk gamma domain NIY04_14420 PF01580 FtsK/SpoIIIE family NIY04_14425 PF07992 Pyridine nucleotide-disulphide oxidoreductase NIY04_14430 PF03588 Leucyl/phenylalanyl-tRNA protein transferase NIY04_14435 PF04377 Arginine-tRNA-protein transferase, C terminus NIY04_14435 PF04376 Arginine-tRNA-protein transferase, N terminus NIY04_14440 PF00583 Acetyltransferase (GNAT) family NIY04_14455 PF03143 Elongation factor Tu C-terminal domain NIY04_14455 PF03144 Elongation factor Tu domain 2 NIY04_14455 PF00009 Elongation factor Tu GTP binding domain NIY04_14460 PF00679 Elongation factor G C-terminus NIY04_14460 PF14492 Elongation Factor G, domain II NIY04_14460 PF03764 Elongation factor G, domain IV NIY04_14460 PF00009 Elongation factor Tu GTP binding domain NIY04_14460 PF03144 Elongation factor Tu domain 2 NIY04_14465 PF00177 Ribosomal protein S7p/S5e NIY04_14470 PF00164 Ribosomal protein S12/S23 NIY04_14480 PF00109 Beta-ketoacyl synthase, N-terminal domain NIY04_14480 PF02801 Beta-ketoacyl synthase, C-terminal domain NIY04_14485 PF03653 Uncharacterised protein family (UPF0093) NIY04_14490 PF02678 Pirin NIY04_14490 PF05726 Pirin C-terminal cupin domain NIY04_14500 PF00795 Carbon-nitrogen hydrolase NIY04_14500 PF02540 NAD synthase NIY04_14515 PF00111 2Fe-2S iron-sulfur cluster binding domain NIY04_14515 PF00175 Oxidoreductase NAD-binding domain NIY04_14515 PF00970 Oxidoreductase FAD-binding domain NIY04_14520 PF00171 Aldehyde dehydrogenase family NIY04_14525 PF00355 Rieske [2Fe-2S] domain NIY04_14525 PF00848 Ring hydroxylating alpha subunit (catalytic domain) NIY04_14530 PF07859 alpha/beta hydrolase fold NIY04_14535 PF02028 BCCT, betaine/carnitine/choline family transporter NIY04_14540 PF00180 Isocitrate/isopropylmalate dehydrogenase NIY04_14545 PF03466 LysR substrate binding domain NIY04_14545 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NIY04_14565 PF00037 4Fe-4S binding domain NIY04_14570 PF01467 Cytidylyltransferase-like NIY04_14575 PF01668 SmpB protein NIY04_14580 PF03358 NADPH-dependent FMN reductase NIY04_14585 PF02578 Multi-copper polyphenol oxidoreductase laccase NIY04_14590 PF00849 RNA pseudouridylate synthase NIY04_14590 PF01479 S4 domain NIY04_14595 PF13525 Outer membrane lipoprotein NIY04_14600 PF01807 CHC2 zinc finger NIY04_14600 PF08275 DNA primase catalytic core, N-terminal domain NIY04_14600 PF10410 DnaB-helicase binding domain of primase NIY04_14600 PF08278 DNA primase DnaG DnaB-binding NIY04_14605 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain NIY04_14605 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain NIY04_14605 PF01488 Shikimate / quinate 5-dehydrogenase NIY04_14615 PF03550 Outer membrane lipoprotein LolB NIY04_14620 PF08544 GHMP kinases C terminal NIY04_14620 PF00288 GHMP kinases N terminal domain NIY04_14645 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase NIY04_14645 PF14572 Phosphoribosyl synthetase-associated domain NIY04_14650 PF01386 Ribosomal L25p family NIY04_14655 PF01195 Peptidyl-tRNA hydrolase NIY04_14660 PF02261 Aspartate decarboxylase NIY04_14675 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase NIY04_14685 PF08543 Phosphomethylpyrimidine kinase NIY04_14685 PF02581 Thiamine monophosphate synthase NIY04_14685 PF03070 TENA/THI-4/PQQC family NIY04_14690 PF04972 BON domain NIY04_14690 PF01476 LysM domain NIY04_14695 PF00550 Phosphopantetheine attachment site NIY04_14705 PF00698 Acyl transferase domain NIY04_14710 PF01783 Ribosomal L32p protein family NIY04_14715 PF02620 Large ribosomal RNA subunit accumulation protein YceD NIY04_14720 PF04315 Elongation factor P hydroxylase NIY04_14725 PF01300 Telomere recombination NIY04_14730 PF02616 Segregation and condensation protein ScpA NIY04_14735 PF04079 Segregation and condensation complex subunit ScpB NIY04_14740 PF00849 RNA pseudouridylate synthase NIY04_14740 PF01479 S4 domain NIY04_14755 PF00155 Aminotransferase class I and II NIY04_14760 PF04055 Radical SAM superfamily NIY04_14760 PF06968 Biotin and Thiamin Synthesis associated domain NIY04_14760 PF00202 Aminotransferase class-III NIY04_14765 PF12697 Alpha/beta hydrolase family NIY04_14765 PF08241 Methyltransferase domain NIY04_14770 PF02358 Trehalose-phosphatase NIY04_14775 PF00982 Glycosyltransferase family 20 NIY04_14780 PF07690 Major Facilitator Superfamily NIY04_14785 PF00210 Ferritin-like domain NIY04_14790 PF12826 Helix-hairpin-helix motif NIY04_14790 PF00533 BRCA1 C Terminus (BRCT) domain NIY04_14790 PF03120 NAD-dependent DNA ligase OB-fold domain NIY04_14790 PF01653 NAD-dependent DNA ligase adenylation domain NIY04_14790 PF03119 NAD-dependent DNA ligase C4 zinc finger domain NIY04_14800 PF06470 SMC proteins Flexible Hinge Domain NIY04_14800 PF02463 RecF/RecN/SMC N terminal domain NIY04_14810 PF01925 Sulfite exporter TauE/SafE NIY04_14820 PF03309 Type III pantothenate kinase NIY04_14825 PF02881 SRP54-type protein, helical bundle domain NIY04_14825 PF00448 SRP54-type protein, GTPase domain NIY04_14825 PF02978 Signal peptide binding domain NIY04_14835 PF01207 Dihydrouridine synthase (Dus) NIY04_14865 PF00692 dUTPase NIY04_14880 PF01048 Phosphorylase superfamily NIY04_14885 PF10609 NUBPL iron-transfer P-loop NTPase NIY04_14895 PF01588 Putative tRNA binding domain NIY04_14895 PF09334 tRNA synthetases class I (M) NIY04_14920 PF13533 Biotin-lipoyl like NIY04_14925 PF00291 Pyridoxal-phosphate dependent enzyme NIY04_14940 PF05552 Conserved TM helix NIY04_14955 PF00175 Oxidoreductase NAD-binding domain NIY04_14955 PF00970 Oxidoreductase FAD-binding domain NIY04_14960 PF03466 LysR substrate binding domain NIY04_14960 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NIY04_14970 PF00313 'Cold-shock' DNA-binding domain NIY04_14980 PF00361 Proton-conducting membrane transporter NIY04_14985 PF00361 Proton-conducting membrane transporter NIY04_14990 PF00361 Proton-conducting membrane transporter NIY04_14990 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus NIY04_14995 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L NIY04_15000 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 NIY04_15005 PF12838 4Fe-4S dicluster domain NIY04_15010 PF00146 NADH dehydrogenase NIY04_15015 PF04879 Molybdopterin oxidoreductase Fe4S4 domain NIY04_15015 PF00384 Molybdopterin oxidoreductase NIY04_15015 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region NIY04_15020 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region NIY04_15020 PF10531 SLBB domain NIY04_15020 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit NIY04_15030 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit NIY04_15030 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit NIY04_15035 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit NIY04_15040 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 NIY04_15045 PF17151 Periplasmic sensor domain NIY04_15045 PF00990 Diguanylate cyclase, GGDEF domain NIY04_15055 PF00512 His Kinase A (phospho-acceptor) domain NIY04_15055 PF00672 HAMP domain NIY04_15055 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NIY04_15060 PF00072 Response regulator receiver domain NIY04_15060 PF00486 Transcriptional regulatory protein, C terminal NIY04_15070 PF02867 Ribonucleotide reductase, barrel domain NIY04_15070 PF03477 ATP cone domain NIY04_15070 PF00317 Ribonucleotide reductase, all-alpha domain NIY04_15080 PF00268 Ribonucleotide reductase, small chain NIY04_15095 PF17074 Darcynin, domain of unknown function NIY04_15120 PF17074 Darcynin, domain of unknown function NIY04_15135 PF01613 Flavin reductase like domain NIY04_15140 PF01717 Cobalamin-independent synthase, Catalytic domain NIY04_15140 PF08267 Cobalamin-independent synthase, N-terminal domain NIY04_15150 PF03466 LysR substrate binding domain NIY04_15150 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NIY04_15155 PF01810 LysE type translocator NIY04_15165 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term NIY04_15165 PF12833 Helix-turn-helix domain NIY04_15170 PF01546 Peptidase family M20/M25/M40 NIY04_15170 PF07687 Peptidase dimerisation domain NIY04_15180 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NIY04_15180 PF03466 LysR substrate binding domain NIY04_15185 PF07690 Major Facilitator Superfamily NIY04_15195 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NIY04_15195 PF03466 LysR substrate binding domain NIY04_15200 PF00890 FAD binding domain NIY04_15200 PF14537 Cytochrome c3 NIY04_15210 PF02515 CoA-transferase family III NIY04_15215 PF07690 Major Facilitator Superfamily NIY04_15220 PF02771 Acyl-CoA dehydrogenase, N-terminal domain NIY04_15220 PF02770 Acyl-CoA dehydrogenase, middle domain NIY04_15220 PF00441 Acyl-CoA dehydrogenase, C-terminal domain NIY04_15225 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NIY04_15225 PF03466 LysR substrate binding domain NIY04_15230 PF00107 Zinc-binding dehydrogenase NIY04_15230 PF08240 Alcohol dehydrogenase GroES-like domain NIY04_15235 PF00962 Adenosine/AMP deaminase NIY04_15260 PF02445 Quinolinate synthetase A protein NIY04_15265 PF01960 ArgJ family NIY04_15270 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain NIY04_15270 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain NIY04_15275 PF00893 Small Multidrug Resistance protein NIY04_15290 PF07732 Multicopper oxidase NIY04_15290 PF07731 Multicopper oxidase NIY04_15290 PF00394 Multicopper oxidase NIY04_15305 PF00834 Ribulose-phosphate 3 epimerase family NIY04_15315 PF00756 Putative esterase NIY04_15325 PF04445 Putative SAM-dependent methyltransferase NIY04_15330 PF00814 Glycoprotease family NIY04_15335 PF00132 Bacterial transferase hexapeptide (six repeats) NIY04_15340 PF00293 NUDIX domain NIY04_15380 PF00425 chorismate binding enzyme NIY04_15380 PF04715 Anthranilate synthase component I, N terminal region NIY04_15385 PF00155 Aminotransferase class I and II NIY04_15390 PF00815 Histidinol dehydrogenase NIY04_15395 PF01634 ATP phosphoribosyltransferase NIY04_15400 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) NIY04_15405 PF01722 BolA-like protein NIY04_15410 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein NIY04_15415 PF04552 Sigma-54, DNA binding domain NIY04_15415 PF00309 Sigma-54 factor, Activator interacting domain (AID) NIY04_15415 PF04963 Sigma-54 factor, core binding domain NIY04_15460 PF00795 Carbon-nitrogen hydrolase NIY04_15470 PF01047 MarR family NIY04_15475 PF02566 OsmC-like protein NIY04_15480 PF00437 Type II/IV secretion system protein NIY04_15500 PF01367 5'-3' exonuclease, C-terminal SAM fold NIY04_15500 PF01612 3'-5' exonuclease NIY04_15500 PF00476 DNA polymerase family A NIY04_15500 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain NIY04_15505 PF02325 YGGT family NIY04_15510 PF14748 Pyrroline-5-carboxylate reductase dimerisation NIY04_15510 PF03807 NADP oxidoreductase coenzyme F420-dependent NIY04_15515 PF01171 PP-loop family NIY04_15515 PF09179 TilS substrate binding domain NIY04_15515 PF11734 TilS substrate C-terminal domain NIY04_15520 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit NIY04_15525 PF02541 Ppx/GppA phosphatase family NIY04_15530 PF00085 Thioredoxin NIY04_15535 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain NIY04_15535 PF07497 Rho termination factor, RNA-binding domain NIY04_15535 PF07498 Rho termination factor, N-terminal domain NIY04_15550 PF00216 Bacterial DNA-binding protein NIY04_15555 PF03483 B3/4 domain NIY04_15555 PF01588 Putative tRNA binding domain NIY04_15555 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain NIY04_15555 PF03484 tRNA synthetase B5 domain NIY04_15555 PF03147 Ferredoxin-fold anticodon binding domain NIY04_15560 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain NIY04_15560 PF01409 tRNA synthetases class II core domain (F) NIY04_15580 PF00453 Ribosomal protein L20 NIY04_15585 PF01632 Ribosomal protein L35 NIY04_15595 PF07690 Major Facilitator Superfamily NIY04_15600 PF09335 SNARE associated Golgi protein NIY04_15605 PF00043 Glutathione S-transferase, C-terminal domain NIY04_15605 PF02798 Glutathione S-transferase, N-terminal domain NIY04_15610 PF05198 Translation initiation factor IF-3, N-terminal domain NIY04_15610 PF00707 Translation initiation factor IF-3, C-terminal domain NIY04_15615 PF03129 Anticodon binding domain NIY04_15615 PF02824 TGS domain NIY04_15615 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) NIY04_15615 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain NIY04_15620 PF00501 AMP-binding enzyme NIY04_15620 PF13193 AMP-binding enzyme C-terminal domain NIY04_15625 PF04751 Protein of unknown function (DUF615) NIY04_15630 PF00381 PTS HPr component phosphorylation site NIY04_15635 PF03668 P-loop ATPase protein family NIY04_15640 PF02569 Pantoate-beta-alanine ligase NIY04_15645 PF02548 Ketopantoate hydroxymethyltransferase NIY04_15650 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) NIY04_15655 PF12627 Probable RNA and SrmB- binding site of polymerase A NIY04_15655 PF01743 Poly A polymerase head domain NIY04_15655 PF12626 Polymerase A arginine-rich C-terminus NIY04_15665 PF03819 MazG nucleotide pyrophosphohydrolase domain NIY04_15675 PF02824 TGS domain NIY04_15675 PF04607 Region found in RelA / SpoT proteins NIY04_15675 PF13291 ACT domain NIY04_15680 PF05958 tRNA (Uracil-5-)-methyltransferase NIY04_15690 PF00291 Pyridoxal-phosphate dependent enzyme NIY04_15695 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) NIY04_15695 PF00072 Response regulator receiver domain NIY04_15695 PF01627 Hpt domain NIY04_15695 PF00672 HAMP domain NIY04_15695 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NIY04_15695 PF00512 His Kinase A (phospho-acceptor) domain NIY04_15700 PF00378 Enoyl-CoA hydratase/isomerase NIY04_15705 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase NIY04_15705 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase NIY04_15710 PF01261 Xylose isomerase-like TIM barrel NIY04_15720 PF00106 short chain dehydrogenase NIY04_15725 PF02233 NAD(P) transhydrogenase beta subunit NIY04_15730 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch NIY04_15735 PF05222 Alanine dehydrogenase/PNT, N-terminal domain NIY04_15735 PF01262 Alanine dehydrogenase/PNT, C-terminal domain NIY04_15740 PF00892 EamA-like transporter family NIY04_15750 PF07690 Major Facilitator Superfamily NIY04_15755 PF01207 Dihydrouridine synthase (Dus) NIY04_15765 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NIY04_15765 PF03466 LysR substrate binding domain NIY04_15775 PF00899 ThiF family NIY04_15780 PF00330 Aconitase family (aconitate hydratase) NIY04_15780 PF00694 Aconitase C-terminal domain NIY04_15785 PF01026 TatD related DNase NIY04_15800 PF00009 Elongation factor Tu GTP binding domain NIY04_15800 PF03144 Elongation factor Tu domain 2 NIY04_15800 PF16658 Class II release factor RF3, C-terminal domain NIY04_15820 PF13296 Putative type VI secretion system Rhs element Vgr NIY04_15820 PF04717 Type VI secretion system, phage-baseplate injector NIY04_15820 PF10106 Uncharacterized protein conserved in bacteria (DUF2345) NIY04_15840 PF00990 Diguanylate cyclase, GGDEF domain NIY04_15840 PF00563 EAL domain NIY04_15840 PF03707 Bacterial signalling protein N terminal repeat NIY04_15845 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain NIY04_15845 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain NIY04_15850 PF10369 Small subunit of acetolactate synthase NIY04_15855 PF00205 Thiamine pyrophosphate enzyme, central domain NIY04_15855 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain NIY04_15855 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain NIY04_15865 PF09334 tRNA synthetases class I (M) NIY04_15865 PF13603 Leucyl-tRNA synthetase, Domain 2 NIY04_15865 PF08264 Anticodon-binding domain of tRNA NIY04_15865 PF00133 tRNA synthetases class I (I, L, M and V) NIY04_15880 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion NIY04_15885 PF12704 MacB-like periplasmic core domain NIY04_15885 PF02687 FtsX-like permease family NIY04_15885 PF00005 ABC transporter NIY04_15890 PF02321 Outer membrane efflux protein NIY04_15905 PF00929 Exonuclease NIY04_15910 PF03193 RsgA GTPase NIY04_15920 PF00462 Glutaredoxin NIY04_15925 PF02556 Preprotein translocase subunit SecB NIY04_15940 PF02801 Beta-ketoacyl synthase, C-terminal domain NIY04_15940 PF00109 Beta-ketoacyl synthase, N-terminal domain NIY04_15955 PF00109 Beta-ketoacyl synthase, N-terminal domain NIY04_15955 PF02801 Beta-ketoacyl synthase, C-terminal domain NIY04_15965 PF04820 Tryptophan halogenase NIY04_15985 PF00221 Aromatic amino acid lyase NIY04_15995 PF00535 Glycosyl transferase family 2 NIY04_16000 PF00501 AMP-binding enzyme NIY04_16000 PF13193 AMP-binding enzyme C-terminal domain NIY04_16010 PF00550 Phosphopantetheine attachment site NIY04_16015 PF00550 Phosphopantetheine attachment site NIY04_16030 PF01926 50S ribosome-binding GTPase NIY04_16030 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal NIY04_16035 PF13360 PQQ-like domain NIY04_16045 PF03129 Anticodon binding domain NIY04_16045 PF13393 Histidyl-tRNA synthetase NIY04_16050 PF04551 GcpE protein NIY04_16055 PF13464 Domain of unknown function (DUF4115) NIY04_16065 PF04055 Radical SAM superfamily NIY04_16070 PF00334 Nucleoside diphosphate kinase NIY04_16075 PF04384 Iron-sulphur cluster assembly NIY04_16080 PF01569 PAP2 superfamily NIY04_16085 PF00534 Glycosyl transferases group 1 NIY04_16085 PF13439 Glycosyltransferase Family 4 NIY04_16090 PF03572 Peptidase family S41 NIY04_16090 PF17804 Tail specific protease N-terminal domain NIY04_16090 PF00595 PDZ domain NIY04_16090 PF11818 C-terminal domain of tail specific protease (DUF3340) NIY04_16095 PF00933 Glycosyl hydrolase family 3 N terminal domain NIY04_16105 PF00561 alpha/beta hydrolase fold NIY04_16110 PF00171 Aldehyde dehydrogenase family NIY04_16115 PF00171 Aldehyde dehydrogenase family NIY04_16120 PF01202 Shikimate kinase NIY04_16125 PF02447 GntP family permease NIY04_16130 PF01081 KDPG and KHG aldolase NIY04_16135 PF00920 Dehydratase family NIY04_16140 PF00871 Acetokinase family NIY04_16145 PF07085 DRTGG domain NIY04_16145 PF01515 Phosphate acetyl/butaryl transferase NIY04_16150 PF05681 Fumarate hydratase (Fumerase) NIY04_16150 PF05683 Fumarase C-terminus NIY04_16165 PF06689 ClpX C4-type zinc finger NIY04_16165 PF07724 AAA domain (Cdc48 subfamily) NIY04_16165 PF10431 C-terminal, D2-small domain, of ClpB protein NIY04_16170 PF00574 Clp protease NIY04_16175 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase NIY04_16175 PF05698 Bacterial trigger factor protein (TF) C-terminus NIY04_16175 PF05697 Bacterial trigger factor protein (TF) NIY04_16180 PF07715 TonB-dependent Receptor Plug Domain NIY04_16180 PF00593 TonB dependent receptor NIY04_16185 PF13640 2OG-Fe(II) oxygenase superfamily NIY04_16185 PF18331 PKHD-type hydroxylase C-terminal domain NIY04_16190 PF00682 HMGL-like NIY04_16190 PF08502 LeuA allosteric (dimerisation) domain NIY04_16195 PF00561 alpha/beta hydrolase fold NIY04_16200 PF00561 alpha/beta hydrolase fold NIY04_16200 PF07021 Methionine biosynthesis protein MetW NIY04_16210 PF01725 Ham1 family NIY04_16220 PF02416 mttA/Hcf106 family NIY04_16225 PF02416 mttA/Hcf106 family NIY04_16230 PF00902 Sec-independent protein translocase protein (TatC) NIY04_16250 PF01790 Prolipoprotein diacylglyceryl transferase NIY04_16265 PF00303 Thymidylate synthase NIY04_16270 PF00186 Dihydrofolate reductase NIY04_16280 PF01625 Peptide methionine sulfoxide reductase NIY04_16290 PF01618 MotA/TolQ/ExbB proton channel family NIY04_16300 PF01842 ACT domain NIY04_16300 PF00551 Formyl transferase NIY04_16310 PF00171 Aldehyde dehydrogenase family NIY04_16315 PF00830 Ribosomal L28 family NIY04_16320 PF00471 Ribosomal protein L33 NIY04_16325 PF00999 Sodium/hydrogen exchanger family NIY04_16325 PF02254 TrkA-N domain NIY04_16345 PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) NIY04_16350 PF13361 UvrD-like helicase C-terminal domain NIY04_16350 PF00580 UvrD/REP helicase N-terminal domain NIY04_16365 PF01396 Topoisomerase DNA binding C4 zinc finger NIY04_16365 PF01131 DNA topoisomerase NIY04_16365 PF01751 Toprim domain NIY04_16365 PF08272 Topoisomerase I zinc-ribbon-like NIY04_16375 PF01638 HxlR-like helix-turn-helix NIY04_16380 PF08240 Alcohol dehydrogenase GroES-like domain NIY04_16380 PF00107 Zinc-binding dehydrogenase NIY04_16385 PF04102 SlyX NIY04_16390 PF00005 ABC transporter NIY04_16390 PF16326 ABC transporter C-terminal domain NIY04_16390 PF12848 ABC transporter NIY04_16395 PF01810 LysE type translocator NIY04_16400 PF03279 Bacterial lipid A biosynthesis acyltransferase NIY04_16410 PF00375 Sodium:dicarboxylate symporter family NIY04_16420 PF02774 Semialdehyde dehydrogenase, dimerisation domain NIY04_16420 PF01118 Semialdehyde dehydrogenase, NAD binding domain NIY04_16440 PF01416 tRNA pseudouridine synthase NIY04_16450 PF01176 Translation initiation factor 1A / IF-1 NIY04_16465 PF00180 Isocitrate/isopropylmalate dehydrogenase NIY04_16475 PF00694 Aconitase C-terminal domain NIY04_16480 PF00330 Aconitase family (aconitate hydratase) NIY04_16490 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NIY04_16490 PF03466 LysR substrate binding domain NIY04_16500 PF00293 NUDIX domain NIY04_16505 PF01590 GAF domain NIY04_16505 PF05524 PEP-utilising enzyme, N-terminal NIY04_16505 PF00391 PEP-utilising enzyme, mobile domain NIY04_16505 PF02896 PEP-utilising enzyme, TIM barrel domain NIY04_16510 PF00141 Peroxidase NIY04_16515 PF12706 Beta-lactamase superfamily domain NIY04_16520 PF03466 LysR substrate binding domain NIY04_16520 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NIY04_16530 PF02798 Glutathione S-transferase, N-terminal domain NIY04_16535 PF13280 WYL domain NIY04_16535 PF08279 HTH domain NIY04_16540 PF13419 Haloacid dehalogenase-like hydrolase NIY04_16545 PF00849 RNA pseudouridylate synthase NIY04_16545 PF01479 S4 domain NIY04_16550 PF12111 Polyribonucleotide phosphorylase C terminal NIY04_16550 PF00575 S1 RNA binding domain NIY04_16550 PF10150 Ribonuclease E/G family NIY04_16555 PF00501 AMP-binding enzyme NIY04_16555 PF13193 AMP-binding enzyme C-terminal domain NIY04_16570 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NIY04_16570 PF03466 LysR substrate binding domain NIY04_16580 PF04055 Radical SAM superfamily NIY04_16580 PF06969 HemN C-terminal domain NIY04_16590 PF01554 MatE NIY04_16595 PF02771 Acyl-CoA dehydrogenase, N-terminal domain NIY04_16595 PF08028 Acyl-CoA dehydrogenase, C-terminal domain NIY04_16595 PF02770 Acyl-CoA dehydrogenase, middle domain NIY04_16600 PF02771 Acyl-CoA dehydrogenase, N-terminal domain NIY04_16600 PF08028 Acyl-CoA dehydrogenase, C-terminal domain NIY04_16605 PF03109 ABC1 family NIY04_16610 PF01197 Ribosomal protein L31 NIY04_16620 PF02537 CrcB-like protein, Camphor Resistance (CrcB) NIY04_16630 PF13247 4Fe-4S dicluster domain NIY04_16630 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster NIY04_16630 PF07992 Pyridine nucleotide-disulphide oxidoreductase NIY04_16640 PF03884 DNA gyrase inhibitor YacG NIY04_16645 PF00753 Metallo-beta-lactamase superfamily NIY04_16650 PF00762 Ferrochelatase NIY04_16660 PF01177 Asp/Glu/Hydantoin racemase NIY04_16680 PF01206 Sulfurtransferase TusA NIY04_16685 PF00571 CBS domain NIY04_16685 PF03471 Transporter associated domain NIY04_16690 PF00795 Carbon-nitrogen hydrolase NIY04_16695 PF01588 Putative tRNA binding domain NIY04_16705 PF07963 Prokaryotic N-terminal methylation motif NIY04_16705 PF08334 Type II secretion system (T2SS), protein G NIY04_16710 PF00482 Type II secretion system (T2SS), protein F NIY04_16715 PF00270 DEAD/DEAH box helicase NIY04_16715 PF00271 Helicase conserved C-terminal domain NIY04_16715 PF17764 3′ DNA-binding domain (3′BD) NIY04_16715 PF18074 Primosomal protein N C-terminal domain NIY04_16715 PF18319 PriA DNA helicase Cys-rich region (CRR) domain NIY04_16720 PF00999 Sodium/hydrogen exchanger family NIY04_16720 PF02254 TrkA-N domain NIY04_16725 PF01430 Hsp33 protein NIY04_16735 PF00226 DnaJ domain NIY04_16735 PF01556 DnaJ C terminal domain NIY04_16745 PF01544 CorA-like Mg2+ transporter protein NIY04_16750 PF03725 3' exoribonuclease family, domain 2 NIY04_16750 PF01138 3' exoribonuclease family, domain 1 NIY04_16750 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain NIY04_16750 PF00575 S1 RNA binding domain NIY04_16750 PF00013 KH domain NIY04_16755 PF00312 Ribosomal protein S15 NIY04_16760 PF00144 Beta-lactamase NIY04_16765 PF13538 UvrD-like helicase C-terminal domain NIY04_16770 PF12705 PD-(D/E)XK nuclease superfamily NIY04_16770 PF13361 UvrD-like helicase C-terminal domain NIY04_16770 PF00580 UvrD/REP helicase N-terminal domain NIY04_16775 PF17946 RecC C-terminal domain NIY04_16785 PF03976 Polyphosphate kinase 2 (PPK2) NIY04_16795 PF01209 ubiE/COQ5 methyltransferase family NIY04_16805 PF03109 ABC1 family NIY04_16810 PF01494 FAD binding domain NIY04_16815 PF01502 Phosphoribosyl-AMP cyclohydrolase NIY04_16830 PF13244 Domain of unknown function (DUF4040) NIY04_16830 PF00361 Proton-conducting membrane transporter NIY04_16830 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus NIY04_16830 PF04039 Domain related to MnhB subunit of Na+/H+ antiporter NIY04_16835 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L NIY04_16840 PF00361 Proton-conducting membrane transporter NIY04_16845 PF01899 Na+/H+ ion antiporter subunit NIY04_16850 PF04066 Multiple resistance and pH regulation protein F (MrpF / PhaF) NIY04_16855 PF03334 Na+/H+ antiporter subunit NIY04_16860 PF02033 Ribosome-binding factor A NIY04_16865 PF11987 Translation-initiation factor 2 NIY04_16865 PF00009 Elongation factor Tu GTP binding domain NIY04_16865 PF08364 Bacterial translation initiation factor IF-2 associated region NIY04_16865 PF04760 Translation initiation factor IF-2, N-terminal region NIY04_16870 PF13184 NusA-like KH domain NIY04_16870 PF08529 NusA N-terminal domain NIY04_16870 PF00575 S1 RNA binding domain NIY04_16875 PF02576 RimP N-terminal domain NIY04_16875 PF17384 RimP C-terminal SH3 domain NIY04_16895 PF03840 Preprotein translocase SecG subunit NIY04_16900 PF00121 Triosephosphate isomerase NIY04_16905 PF00437 Type II/IV secretion system protein NIY04_16905 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain NIY04_16910 PF00482 Type II secretion system (T2SS), protein F NIY04_16920 PF01478 Type IV leader peptidase family NIY04_16920 PF06750 Bacterial Peptidase A24 N-terminal domain NIY04_16925 PF01121 Dephospho-CoA kinase NIY04_16935 PF08032 RNA 2'-O ribose methyltransferase substrate binding NIY04_16935 PF00588 SpoU rRNA Methylase family NIY04_16940 PF06865 Pyrimidine/purine nucleoside phosphorylase NIY04_16950 PF02463 RecF/RecN/SMC N terminal domain NIY04_16955 PF02622 Uncharacterized ACR, COG1678 NIY04_16960 PF03652 Holliday junction resolvase NIY04_16965 PF13533 Biotin-lipoyl like NIY04_16990 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain NIY04_16990 PF12833 Helix-turn-helix domain NIY04_16990 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain NIY04_16990 PF02805 Metal binding domain of Ada NIY04_16995 PF01066 CDP-alcohol phosphatidyltransferase NIY04_17005 PF01541 GIY-YIG catalytic domain NIY04_17005 PF08459 UvrC Helix-hairpin-helix N-terminal NIY04_17005 PF02151 UvrB/uvrC motif NIY04_17020 PF00378 Enoyl-CoA hydratase/isomerase NIY04_17020 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain NIY04_17020 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain NIY04_17025 PF00108 Thiolase, N-terminal domain NIY04_17025 PF02803 Thiolase, C-terminal domain NIY04_17050 PF00376 MerR family regulatory protein NIY04_17050 PF09278 MerR, DNA binding NIY04_17060 PF01323 DSBA-like thioredoxin domain NIY04_17075 PF00183 Hsp90 protein NIY04_17075 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NIY04_17090 PF03553 Na+/H+ antiporter family NIY04_17090 PF13726 Na+-H+ antiporter family NIY04_17095 PF00561 alpha/beta hydrolase fold NIY04_17115 PF04997 RNA polymerase Rpb1, domain 1 NIY04_17115 PF00623 RNA polymerase Rpb1, domain 2 NIY04_17115 PF04983 RNA polymerase Rpb1, domain 3 NIY04_17115 PF05000 RNA polymerase Rpb1, domain 4 NIY04_17115 PF04998 RNA polymerase Rpb1, domain 5 NIY04_17120 PF04565 RNA polymerase Rpb2, domain 3 NIY04_17120 PF04563 RNA polymerase beta subunit NIY04_17120 PF04561 RNA polymerase Rpb2, domain 2 NIY04_17120 PF10385 RNA polymerase beta subunit external 1 domain NIY04_17120 PF00562 RNA polymerase Rpb2, domain 6 NIY04_17120 PF04560 RNA polymerase Rpb2, domain 7 NIY04_17125 PF16320 Ribosomal protein L7/L12 dimerisation domain NIY04_17125 PF00542 Ribosomal protein L7/L12 C-terminal domain NIY04_17130 PF00466 Ribosomal protein L10 NIY04_17135 PF00687 Ribosomal protein L1p/L10e family NIY04_17140 PF00298 Ribosomal protein L11, RNA binding domain NIY04_17140 PF03946 Ribosomal protein L11, N-terminal domain NIY04_17145 PF00467 KOW motif NIY04_17145 PF02357 Transcription termination factor nusG NIY04_17150 PF00584 SecE/Sec61-gamma subunits of protein translocation complex NIY04_17160 PF03143 Elongation factor Tu C-terminal domain NIY04_17160 PF00009 Elongation factor Tu GTP binding domain NIY04_17160 PF03144 Elongation factor Tu domain 2 NIY04_17185 PF04715 Anthranilate synthase component I, N terminal region NIY04_17185 PF00425 chorismate binding enzyme NIY04_17190 PF13419 Haloacid dehalogenase-like hydrolase NIY04_17195 PF00498 FHA domain NIY04_17195 PF12401 Protein of unknown function (DUF2662) NIY04_17200 PF00263 Bacterial type II and III secretion system protein NIY04_17200 PF03958 Bacterial type II/III secretion system short domain NIY04_17215 PF00816 H-NS histone family NIY04_17240 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain NIY04_17240 PF03900 Porphobilinogen deaminase, C-terminal domain NIY04_17245 PF04397 LytTr DNA-binding domain NIY04_17245 PF00072 Response regulator receiver domain NIY04_17250 PF07694 5TMR of 5TMR-LYT NIY04_17250 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NIY04_17250 PF06580 Histidine kinase NIY04_17255 PF14698 Argininosuccinate lyase C-terminal NIY04_17255 PF00206 Lyase NIY04_17260 PF04362 Bacterial Fe(2+) trafficking NIY04_17265 PF01895 PhoU domain NIY04_17270 PF02321 Outer membrane efflux protein NIY04_17275 PF00892 EamA-like transporter family NIY04_17290 PF01964 Radical SAM ThiC family NIY04_17290 PF13667 ThiC-associated domain NIY04_17295 PF00293 NUDIX domain NIY04_17300 PF00149 Calcineurin-like phosphoesterase NIY04_17305 PF01258 Prokaryotic dksA/traR C4-type zinc finger NIY04_17310 PF00749 tRNA synthetases class I (E and Q), catalytic domain NIY04_17315 PF01098 Cell cycle protein NIY04_17320 PF02875 Mur ligase family, glutamate ligase domain NIY04_17320 PF08245 Mur ligase middle domain NIY04_17330 PF07670 Nucleoside recognition NIY04_17330 PF02421 Ferrous iron transport protein B NIY04_17330 PF07664 Ferrous iron transport protein B C terminus NIY04_17340 PF00589 Phage integrase family NIY04_17340 PF02899 Phage integrase, N-terminal SAM-like domain NIY04_17345 PF10411 Disulfide bond isomerase protein N-terminus NIY04_17345 PF13098 Thioredoxin-like domain NIY04_17350 PF01842 ACT domain NIY04_17350 PF00742 Homoserine dehydrogenase NIY04_17350 PF03447 Homoserine dehydrogenase, NAD binding domain NIY04_17355 PF00291 Pyridoxal-phosphate dependent enzyme NIY04_17360 PF00768 D-alanyl-D-alanine carboxypeptidase NIY04_17365 PF00196 Bacterial regulatory proteins, luxR family NIY04_17365 PF00072 Response regulator receiver domain NIY04_17370 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NIY04_17370 PF00512 His Kinase A (phospho-acceptor) domain NIY04_17375 PF00072 Response regulator receiver domain NIY04_17375 PF00158 Sigma-54 interaction domain NIY04_17375 PF02954 Bacterial regulatory protein, Fis family NIY04_17380 PF03572 Peptidase family S41 NIY04_17380 PF00595 PDZ domain NIY04_17385 PF01676 Metalloenzyme superfamily NIY04_17385 PF06415 BPG-independent PGAM N-terminus (iPGM_N) NIY04_17390 PF03739 Lipopolysaccharide export system permease LptF/LptG NIY04_17400 PF02789 Cytosol aminopeptidase family, N-terminal domain NIY04_17400 PF00883 Cytosol aminopeptidase family, catalytic domain NIY04_17420 PF00677 Lumazine binding domain NIY04_17430 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region NIY04_17430 PF01872 RibD C-terminal domain NIY04_17435 PF03477 ATP cone domain NIY04_17440 PF00909 Ammonium Transporter Family NIY04_17445 PF00543 Nitrogen regulatory protein P-II NIY04_17465 PF00916 Sulfate permease family NIY04_17465 PF01740 STAS domain NIY04_17470 PF00582 Universal stress protein family NIY04_17500 PF00665 Integrase core domain NIY04_17535 PF00701 Dihydrodipicolinate synthetase family NIY04_17550 PF03573 outer membrane porin, OprD family NIY04_17555 PF00719 Inorganic pyrophosphatase NIY04_17570 PF00501 AMP-binding enzyme NIY04_17570 PF13193 AMP-binding enzyme C-terminal domain NIY04_17575 PF00521 DNA gyrase/topoisomerase IV, subunit A NIY04_17575 PF03989 DNA gyrase C-terminal domain, beta-propeller NIY04_17580 PF07690 Major Facilitator Superfamily NIY04_17585 PF03458 UPF0126 domain NIY04_17590 PF02810 SEC-C motif NIY04_17595 PF03471 Transporter associated domain NIY04_17595 PF03741 Integral membrane protein TerC family NIY04_17600 PF03641 Possible lysine decarboxylase NIY04_17605 PF07690 Major Facilitator Superfamily NIY04_17615 PF00817 impB/mucB/samB family NIY04_17615 PF11799 impB/mucB/samB family C-terminal domain NIY04_17615 PF11798 IMS family HHH motif NIY04_17635 PF11842 Domain of unknown function (DUF3362) NIY04_17635 PF04055 Radical SAM superfamily NIY04_17635 PF08497 Radical SAM N-terminal NIY04_17655 PF03358 NADPH-dependent FMN reductase NIY04_17665 PF00291 Pyridoxal-phosphate dependent enzyme NIY04_17725 PF01327 Polypeptide deformylase NIY04_17735 PF17782 DprA winged helix domain NIY04_17735 PF02481 DNA recombination-mediator protein A NIY04_17740 PF01300 Telomere recombination NIY04_17745 PF00892 EamA-like transporter family NIY04_17750 PF00440 Bacterial regulatory proteins, tetR family NIY04_17755 PF07690 Major Facilitator Superfamily NIY04_17765 PF00255 Glutathione peroxidase NIY04_17775 PF11008 Protein of unknown function (DUF2846) NIY04_17780 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain NIY04_17785 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain NIY04_17785 PF02874 ATP synthase alpha/beta family, beta-barrel domain NIY04_17790 PF00231 ATP synthase NIY04_17795 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain NIY04_17795 PF02874 ATP synthase alpha/beta family, beta-barrel domain NIY04_17795 PF00306 ATP synthase alpha/beta chain, C terminal domain NIY04_17800 PF00213 ATP synthase delta (OSCP) subunit NIY04_17805 PF00430 ATP synthase B/B' CF(0) NIY04_17810 PF00137 ATP synthase subunit C NIY04_17815 PF00119 ATP synthase A chain NIY04_17835 PF00005 ABC transporter NIY04_17840 PF00950 ABC 3 transport family NIY04_17845 PF01810 LysE type translocator NIY04_17850 PF04261 Dyp-type peroxidase family NIY04_17855 PF03949 Malic enzyme, NAD binding domain NIY04_17855 PF00390 Malic enzyme, N-terminal domain NIY04_17860 PF00750 tRNA synthetases class I (R) NIY04_17860 PF03485 Arginyl tRNA synthetase N terminal domain NIY04_17860 PF05746 DALR anticodon binding domain NIY04_17880 PF02678 Pirin NIY04_17880 PF05726 Pirin C-terminal cupin domain NIY04_17890 PF03551 Transcriptional regulator PadR-like family NIY04_17895 PF01909 Nucleotidyltransferase domain NIY04_17895 PF13427 Domain of unknown function (DUF4111) NIY04_17900 PF00958 GMP synthase C terminal domain NIY04_17900 PF02540 NAD synthase NIY04_17900 PF00117 Glutamine amidotransferase class-I NIY04_17905 PF04286 Protein of unknown function (DUF445) NIY04_17910 PF07681 DoxX NIY04_17915 PF09335 SNARE associated Golgi protein NIY04_17930 PF13614 AAA domain NIY04_17940 PF01722 BolA-like protein NIY04_17955 PF01648 4'-phosphopantetheinyl transferase superfamily NIY04_17960 PF16363 GDP-mannose 4,6 dehydratase NIY04_17975 PF00501 AMP-binding enzyme NIY04_17975 PF13193 AMP-binding enzyme C-terminal domain NIY04_17975 PF00668 Condensation domain NIY04_17975 PF00550 Phosphopantetheine attachment site NIY04_17975 PF00975 Thioesterase domain NIY04_17980 PF02801 Beta-ketoacyl synthase, C-terminal domain NIY04_17980 PF00109 Beta-ketoacyl synthase, N-terminal domain NIY04_17980 PF08242 Methyltransferase domain NIY04_17980 PF00550 Phosphopantetheine attachment site NIY04_17980 PF14765 Polyketide synthase dehydratase NIY04_17980 PF00975 Thioesterase domain NIY04_17980 PF16197 Ketoacyl-synthetase C-terminal extension NIY04_17985 PF00441 Acyl-CoA dehydrogenase, C-terminal domain NIY04_17985 PF02770 Acyl-CoA dehydrogenase, middle domain NIY04_17985 PF02771 Acyl-CoA dehydrogenase, N-terminal domain NIY04_17990 PF00501 AMP-binding enzyme NIY04_17995 PF03472 Autoinducer binding domain NIY04_17995 PF00196 Bacterial regulatory proteins, luxR family NIY04_18005 PF00765 Autoinducer synthase NIY04_18010 PF07690 Major Facilitator Superfamily NIY04_18010 PF00083 Sugar (and other) transporter NIY04_18015 PF00378 Enoyl-CoA hydratase/isomerase NIY04_18020 PF00378 Enoyl-CoA hydratase/isomerase NIY04_18025 PF02771 Acyl-CoA dehydrogenase, N-terminal domain NIY04_18025 PF02770 Acyl-CoA dehydrogenase, middle domain NIY04_18025 PF00441 Acyl-CoA dehydrogenase, C-terminal domain NIY04_18030 PF13193 AMP-binding enzyme C-terminal domain NIY04_18030 PF00501 AMP-binding enzyme NIY04_18035 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase NIY04_18035 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase NIY04_18040 PF00171 Aldehyde dehydrogenase family NIY04_18050 PF00324 Amino acid permease NIY04_18055 PF00324 Amino acid permease NIY04_18060 PF01042 Endoribonuclease L-PSP NIY04_18065 PF01168 Alanine racemase, N-terminal domain NIY04_18065 PF00842 Alanine racemase, C-terminal domain NIY04_18070 PF01266 FAD dependent oxidoreductase NIY04_18075 PF01037 Lrp/AsnC ligand binding domain NIY04_18085 PF00593 TonB dependent receptor NIY04_18085 PF07715 TonB-dependent Receptor Plug Domain NIY04_18100 PF00849 RNA pseudouridylate synthase NIY04_18140 PF04717 Type VI secretion system, phage-baseplate injector NIY04_18140 PF10106 Uncharacterized protein conserved in bacteria (DUF2345) NIY04_18140 PF13296 Putative type VI secretion system Rhs element Vgr NIY04_18150 PF00109 Beta-ketoacyl synthase, N-terminal domain NIY04_18150 PF02801 Beta-ketoacyl synthase, C-terminal domain NIY04_18180 PF00330 Aconitase family (aconitate hydratase) NIY04_18180 PF00694 Aconitase C-terminal domain NIY04_18185 PF00285 Citrate synthase, C-terminal domain NIY04_18195 PF07729 FCD domain NIY04_18195 PF00392 Bacterial regulatory proteins, gntR family NIY04_18205 PF00155 Aminotransferase class I and II NIY04_18210 PF09330 D-lactate dehydrogenase, membrane binding NIY04_18210 PF01565 FAD binding domain NIY04_18215 PF01070 FMN-dependent dehydrogenase NIY04_18220 PF00392 Bacterial regulatory proteins, gntR family NIY04_18220 PF07729 FCD domain NIY04_18225 PF02652 L-lactate permease NIY04_18230 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain NIY04_18230 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III NIY04_18230 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II NIY04_18230 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I NIY04_18235 PF16363 GDP-mannose 4,6 dehydratase NIY04_18240 PF00342 Phosphoglucose isomerase NIY04_18245 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain NIY04_18245 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain NIY04_18245 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain NIY04_18250 PF00483 Nucleotidyl transferase NIY04_18255 PF02397 Bacterial sugar transferase NIY04_18260 PF00535 Glycosyl transferase family 2 NIY04_18265 PF00534 Glycosyl transferases group 1 NIY04_18280 PF00534 Glycosyl transferases group 1 NIY04_18280 PF13439 Glycosyltransferase Family 4 NIY04_18285 PF12464 Maltose acetyltransferase NIY04_18285 PF14602 Hexapeptide repeat of succinyl-transferase NIY04_18285 PF00132 Bacterial transferase hexapeptide (six repeats) NIY04_18295 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family NIY04_18300 PF00132 Bacterial transferase hexapeptide (six repeats) NIY04_18305 PF02894 Oxidoreductase family, C-terminal alpha/beta domain NIY04_18305 PF01408 Oxidoreductase family, NAD-binding Rossmann fold NIY04_18310 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain NIY04_18310 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain NIY04_18310 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain NIY04_18315 PF02563 Polysaccharide biosynthesis/export protein NIY04_18315 PF18412 Outer-membrane lipoprotein Wza C-terminal domain NIY04_18315 PF10531 SLBB domain NIY04_18320 PF01451 Low molecular weight phosphotyrosine protein phosphatase NIY04_18325 PF13614 AAA domain NIY04_18325 PF13807 G-rich domain on putative tyrosine kinase NIY04_18325 PF02706 Chain length determinant protein NIY04_18330 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase NIY04_18330 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase NIY04_18335 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase NIY04_18335 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase NIY04_18340 PF03023 Lipid II flippase MurJ NIY04_18345 PF01510 N-acetylmuramoyl-L-alanine amidase NIY04_18350 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain NIY04_18350 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain NIY04_18360 PF05506 Domain of unknown function (DUF756) NIY04_18360 PF04185 Phosphoesterase family NIY04_18370 PF03725 3' exoribonuclease family, domain 2 NIY04_18370 PF01138 3' exoribonuclease family, domain 1 NIY04_18375 PF00487 Fatty acid desaturase NIY04_18380 PF00175 Oxidoreductase NAD-binding domain NIY04_18385 PF00440 Bacterial regulatory proteins, tetR family NIY04_18390 PF00440 Bacterial regulatory proteins, tetR family NIY04_18390 PF08360 QacR-like protein, C-terminal region NIY04_18395 PF01323 DSBA-like thioredoxin domain NIY04_18405 PF13419 Haloacid dehalogenase-like hydrolase NIY04_18410 PF00106 short chain dehydrogenase NIY04_18425 PF00696 Amino acid kinase family NIY04_18425 PF00583 Acetyltransferase (GNAT) family NIY04_18430 PF09084 NMT1/THI5 like NIY04_18435 PF09084 NMT1/THI5 like NIY04_18440 PF00296 Luciferase-like monooxygenase NIY04_18445 PF00528 Binding-protein-dependent transport system inner membrane component NIY04_18450 PF00005 ABC transporter NIY04_18455 PF00440 Bacterial regulatory proteins, tetR family NIY04_18455 PF08362 YcdC-like protein, C-terminal region NIY04_18460 PF01048 Phosphorylase superfamily NIY04_18470 PF06574 FAD synthetase NIY04_18470 PF01687 Riboflavin kinase NIY04_18475 PF08264 Anticodon-binding domain of tRNA NIY04_18475 PF00133 tRNA synthetases class I (I, L, M and V) NIY04_18475 PF06827 Zinc finger found in FPG and IleRS NIY04_18480 PF01252 Signal peptidase (SPase) II NIY04_18485 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase NIY04_18525 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD NIY04_18530 PF07859 alpha/beta hydrolase fold NIY04_18550 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NIY04_18550 PF03466 LysR substrate binding domain NIY04_18555 PF01025 GrpE NIY04_18560 PF00012 Hsp70 protein NIY04_18580 PF13406 Transglycosylase SLT domain NIY04_18585 PF02222 ATP-grasp domain NIY04_18585 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain NIY04_18590 PF00731 AIR carboxylase NIY04_18600 PF01225 Mur ligase family, catalytic domain NIY04_18600 PF02875 Mur ligase family, glutamate ligase domain NIY04_18600 PF08245 Mur ligase middle domain NIY04_18610 PF01569 PAP2 superfamily NIY04_18615 PF03741 Integral membrane protein TerC family NIY04_18625 PF03738 Glutathionylspermidine synthase preATP-grasp NIY04_18630 PF00355 Rieske [2Fe-2S] domain NIY04_18635 PF01979 Amidohydrolase family NIY04_18640 PF00156 Phosphoribosyl transferase domain NIY04_18650 PF10411 Disulfide bond isomerase protein N-terminus NIY04_18650 PF13098 Thioredoxin-like domain NIY04_18655 PF01545 Cation efflux family NIY04_18655 PF16916 Dimerisation domain of Zinc Transporter NIY04_18660 PF02583 Metal-sensitive transcriptional repressor NIY04_18665 PF01926 50S ribosome-binding GTPase NIY04_18665 PF12631 MnmE helical domain NIY04_18665 PF10396 GTP-binding protein TrmE N-terminus NIY04_18670 PF14849 YidC periplasmic domain NIY04_18670 PF02096 60Kd inner membrane protein NIY04_18675 PF01809 Putative membrane protein insertion efficiency factor NIY04_18680 PF00825 Ribonuclease P NIY04_18685 PF00468 Ribosomal protein L34