locus-tag class description DKE39_000055 PF01521 Iron-sulphur cluster biosynthesis DKE39_000065 PF03702 Anhydro-N-acetylmuramic acid kinase DKE39_000130 PF00551 Formyl transferase DKE39_000130 PF02911 Formyl transferase, C-terminal domain DKE39_000155 PF00860 Permease family DKE39_000165 PF00440 Bacterial regulatory proteins, tetR family DKE39_000165 PF08361 MAATS-type transcriptional repressor, C-terminal region DKE39_000195 PF05173 Dihydrodipicolinate reductase, C-terminus DKE39_000195 PF01113 Dihydrodipicolinate reductase, N-terminus DKE39_000210 PF00248 Aldo/keto reductase family DKE39_000235 PF08240 Alcohol dehydrogenase GroES-like domain DKE39_000235 PF00107 Zinc-binding dehydrogenase DKE39_000240 PF03352 Methyladenine glycosylase DKE39_000270 PF07043 Protein of unknown function (DUF1328) DKE39_000275 PF03692 Putative zinc- or iron-chelating domain DKE39_000280 PF00419 Fimbrial protein DKE39_000295 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain DKE39_000295 PF02753 Pili assembly chaperone PapD, C-terminal domain DKE39_000300 PF02753 Pili assembly chaperone PapD, C-terminal domain DKE39_000300 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain DKE39_000305 PF00577 Outer membrane usher protein DKE39_000305 PF13953 PapC C-terminal domain DKE39_000305 PF13954 PapC N-terminal domain DKE39_000310 PF13954 PapC N-terminal domain DKE39_000310 PF13953 PapC C-terminal domain DKE39_000310 PF00577 Outer membrane usher protein DKE39_000340 PF01259 SAICAR synthetase DKE39_000350 PF00701 Dihydrodipicolinate synthetase family DKE39_000355 PF00857 Isochorismatase family DKE39_000370 PF01554 MatE DKE39_000375 PF04463 Protein of unknown function (DUF523) DKE39_000415 PF07683 Cobalamin synthesis protein cobW C-terminal domain DKE39_000415 PF02492 CobW/HypB/UreG, nucleotide-binding domain DKE39_000430 PF07702 UTRA domain DKE39_000430 PF00392 Bacterial regulatory proteins, gntR family DKE39_000435 PF05962 HutD DKE39_000450 PF00324 Amino acid permease DKE39_000460 PF00491 Arginase family DKE39_000475 PF01177 Asp/Glu/Hydantoin racemase DKE39_000490 PF01380 SIS domain DKE39_000500 PF04608 Phosphatidylglycerophosphatase A DKE39_000505 PF02769 AIR synthase related protein, C-terminal domain DKE39_000505 PF00586 AIR synthase related protein, N-terminal domain DKE39_000510 PF01029 NusB family DKE39_000520 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase DKE39_000520 PF00925 GTP cyclohydrolase II DKE39_000555 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family DKE39_000555 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain DKE39_000565 PF02666 Phosphatidylserine decarboxylase DKE39_000580 PF00486 Transcriptional regulatory protein, C terminal DKE39_000580 PF00072 Response regulator receiver domain DKE39_000590 PF00106 short chain dehydrogenase DKE39_000605 PF04286 Protein of unknown function (DUF445) DKE39_000620 PF04262 Glutamate-cysteine ligase DKE39_000625 PF02600 Disulfide bond formation protein DsbB DKE39_000645 PF05728 Uncharacterised protein family (UPF0227) DKE39_000675 PF00860 Permease family DKE39_000715 PF07694 5TMR of 5TMR-LYT DKE39_000715 PF00990 Diguanylate cyclase, GGDEF domain DKE39_000720 PF07859 alpha/beta hydrolase fold DKE39_000735 PF03372 Endonuclease/Exonuclease/phosphatase family DKE39_000780 PF03033 Glycosyltransferase family 28 N-terminal domain DKE39_000780 PF04101 Glycosyltransferase family 28 C-terminal domain DKE39_000785 PF08245 Mur ligase middle domain DKE39_000785 PF02875 Mur ligase family, glutamate ligase domain DKE39_000785 PF01225 Mur ligase family, catalytic domain DKE39_000790 PF01820 D-ala D-ala ligase N-terminus DKE39_000790 PF07478 D-ala D-ala ligase C-terminus DKE39_000795 PF03799 Cell division protein FtsQ DKE39_000795 PF08478 POTRA domain, FtsQ-type DKE39_000800 PF02491 SHS2 domain inserted in FTSA DKE39_000805 PF00091 Tubulin/FtsZ family, GTPase domain DKE39_000805 PF12327 FtsZ family, C-terminal domain DKE39_000820 PF01551 Peptidase family M23 DKE39_000830 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) DKE39_000830 PF00364 Biotin-requiring enzyme DKE39_000830 PF02817 e3 binding domain DKE39_000840 PF01169 Uncharacterized protein family UPF0016 DKE39_000850 PF01613 Flavin reductase like domain DKE39_000850 PF00258 Flavodoxin DKE39_000855 PF03692 Putative zinc- or iron-chelating domain DKE39_000870 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region DKE39_000870 PF01243 Pyridoxamine 5'-phosphate oxidase DKE39_000895 PF00724 NADH:flavin oxidoreductase / NADH oxidase family DKE39_000910 PF00924 Mechanosensitive ion channel DKE39_000925 PF00857 Isochorismatase family DKE39_000930 PF01037 Lrp/AsnC ligand binding domain DKE39_000940 PF03358 NADPH-dependent FMN reductase DKE39_000945 PF00196 Bacterial regulatory proteins, luxR family DKE39_000945 PF00072 Response regulator receiver domain DKE39_000995 PF16925 Tetracyclin repressor-like, C-terminal domain DKE39_000995 PF00440 Bacterial regulatory proteins, tetR family DKE39_001000 PF00107 Zinc-binding dehydrogenase DKE39_001000 PF08240 Alcohol dehydrogenase GroES-like domain DKE39_001010 PF06942 GlpM protein DKE39_001015 PF08543 Phosphomethylpyrimidine kinase DKE39_001015 PF03070 TENA/THI-4/PQQC family DKE39_001015 PF02581 Thiamine monophosphate synthase DKE39_001055 PF04245 37-kD nucleoid-associated bacterial protein DKE39_001095 PF00202 Aminotransferase class-III DKE39_001110 PF00857 Isochorismatase family DKE39_001140 PF07690 Major Facilitator Superfamily DKE39_001145 PF03466 LysR substrate binding domain DKE39_001145 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DKE39_001195 PF01638 HxlR-like helix-turn-helix DKE39_001205 PF02525 Flavodoxin-like fold DKE39_001235 PF02705 K+ potassium transporter DKE39_001265 PF00230 Major intrinsic protein DKE39_001280 PF00977 Histidine biosynthesis protein DKE39_001300 PF03992 Antibiotic biosynthesis monooxygenase DKE39_001320 PF00977 Histidine biosynthesis protein DKE39_001335 PF00117 Glutamine amidotransferase class-I DKE39_001360 PF00583 Acetyltransferase (GNAT) family DKE39_001395 PF00106 short chain dehydrogenase DKE39_001440 PF01545 Cation efflux family DKE39_001505 PF01795 MraW methylase family DKE39_001530 PF00953 Glycosyl transferase family 4 DKE39_001545 PF17092 Penicillin-binding protein OB-like domain DKE39_001545 PF00905 Penicillin binding protein transpeptidase domain DKE39_001545 PF00912 Transglycosylase DKE39_001580 PF01761 3-dehydroquinate synthase DKE39_001595 PF07992 Pyridine nucleotide-disulphide oxidoreductase DKE39_001595 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster DKE39_001605 PF04011 LemA family DKE39_001610 PF04536 TPM domain DKE39_001620 PF07963 Prokaryotic N-terminal methylation motif DKE39_001620 PF00114 Pilin (bacterial filament) DKE39_001640 PF04324 BFD-like [2Fe-2S] binding domain DKE39_001645 PF01042 Endoribonuclease L-PSP DKE39_001655 PF01192 RNA polymerase Rpb6 DKE39_001660 PF00625 Guanylate kinase DKE39_001665 PF02401 LytB protein DKE39_001720 PF01782 RimM N-terminal domain DKE39_001720 PF05239 PRC-barrel domain DKE39_001730 PF01245 Ribosomal protein L19 DKE39_001735 PF00561 alpha/beta hydrolase fold DKE39_001765 PF00892 EamA-like transporter family DKE39_001770 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain DKE39_001770 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain DKE39_001785 PF03992 Antibiotic biosynthesis monooxygenase DKE39_001810 PF00080 Copper/zinc superoxide dismutase (SODC) DKE39_001820 PF13614 AAA domain DKE39_001850 PF00324 Amino acid permease DKE39_001875 PF04996 Succinylarginine dihydrolase DKE39_001880 PF04952 Succinylglutamate desuccinylase / Aspartoacylase family DKE39_001910 PF03466 LysR substrate binding domain DKE39_001910 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DKE39_001935 PF02092 Glycyl-tRNA synthetase beta subunit DKE39_001935 PF05746 DALR anticodon binding domain DKE39_001940 PF02091 Glycyl-tRNA synthetase alpha subunit DKE39_002000 PF00925 GTP cyclohydrolase II DKE39_002010 PF00459 Inositol monophosphatase family DKE39_002015 PF00271 Helicase conserved C-terminal domain DKE39_002015 PF12343 Cold shock protein DEAD box A DKE39_002015 PF00270 DEAD/DEAH box helicase DKE39_002015 PF03880 DbpA RNA binding domain DKE39_002020 PF00005 ABC transporter DKE39_002025 PF02405 Permease MlaE DKE39_002035 PF05494 MlaC protein DKE39_002050 PF03641 Possible lysine decarboxylase DKE39_002055 PF00293 NUDIX domain DKE39_002060 PF00156 Phosphoribosyl transferase domain DKE39_002080 PF01553 Acyltransferase DKE39_002090 PF00375 Sodium:dicarboxylate symporter family DKE39_002100 PF01926 50S ribosome-binding GTPase DKE39_002105 PF02082 Transcriptional regulator DKE39_002110 PF00042 Globin DKE39_002110 PF00970 Oxidoreductase FAD-binding domain DKE39_002110 PF00175 Oxidoreductase NAD-binding domain DKE39_002120 PF01053 Cys/Met metabolism PLP-dependent enzyme DKE39_002130 PF00338 Ribosomal protein S10p/S20e DKE39_002155 PF00203 Ribosomal protein S19 DKE39_002160 PF00237 Ribosomal protein L22p/L17e DKE39_002170 PF00252 Ribosomal protein L16p/L10e DKE39_002175 PF00831 Ribosomal L29 protein DKE39_002180 PF00366 Ribosomal protein S17 DKE39_002190 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 DKE39_002190 PF00467 KOW motif DKE39_002200 PF00253 Ribosomal protein S14p/S29e DKE39_002205 PF00410 Ribosomal protein S8 DKE39_002210 PF00347 Ribosomal protein L6 DKE39_002215 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast DKE39_002220 PF00333 Ribosomal protein S5, N-terminal domain DKE39_002220 PF03719 Ribosomal protein S5, C-terminal domain DKE39_002225 PF00327 Ribosomal protein L30p/L7e DKE39_002230 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A DKE39_002235 PF00344 SecY translocase DKE39_002240 PF00444 Ribosomal protein L36 DKE39_002245 PF00416 Ribosomal protein S13/S18 DKE39_002250 PF00411 Ribosomal protein S11 DKE39_002255 PF01479 S4 domain DKE39_002255 PF00163 Ribosomal protein S4/S9 N-terminal domain DKE39_002260 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain DKE39_002260 PF01000 RNA polymerase Rpb3/RpoA insert domain DKE39_002260 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain DKE39_002265 PF01196 Ribosomal protein L17 DKE39_002275 PF02771 Acyl-CoA dehydrogenase, N-terminal domain DKE39_002275 PF00441 Acyl-CoA dehydrogenase, C-terminal domain DKE39_002275 PF02770 Acyl-CoA dehydrogenase, middle domain DKE39_002280 PF03937 Flavinator of succinate dehydrogenase DKE39_002310 PF09526 Probable metal-binding protein (DUF2387) DKE39_002365 PF01557 Fumarylacetoacetate (FAA) hydrolase family DKE39_002370 PF12833 Helix-turn-helix domain DKE39_002410 PF02130 Uncharacterized protein family UPF0054 DKE39_002425 PF01551 Peptidase family M23 DKE39_002425 PF10145 Phage-related minor tail protein DKE39_002425 PF01464 Transglycosylase SLT domain DKE39_002435 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain DKE39_002435 PF00056 lactate/malate dehydrogenase, NAD binding domain DKE39_002455 PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ DKE39_002460 PF01066 CDP-alcohol phosphatidyltransferase DKE39_002510 PF02771 Acyl-CoA dehydrogenase, N-terminal domain DKE39_002510 PF00441 Acyl-CoA dehydrogenase, C-terminal domain DKE39_002510 PF02770 Acyl-CoA dehydrogenase, middle domain DKE39_002515 PF00440 Bacterial regulatory proteins, tetR family DKE39_002515 PF17932 Tetracyclin repressor-like, C-terminal domain DKE39_002535 PF02771 Acyl-CoA dehydrogenase, N-terminal domain DKE39_002535 PF00441 Acyl-CoA dehydrogenase, C-terminal domain DKE39_002535 PF02770 Acyl-CoA dehydrogenase, middle domain DKE39_002540 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain DKE39_002540 PF00378 Enoyl-CoA hydratase/isomerase DKE39_002540 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain DKE39_002555 PF04386 Stringent starvation protein B DKE39_002560 PF00043 Glutathione S-transferase, C-terminal domain DKE39_002560 PF13417 Glutathione S-transferase, N-terminal domain DKE39_002565 PF00380 Ribosomal protein S9/S16 DKE39_002570 PF00572 Ribosomal protein L13 DKE39_002580 PF00398 Ribosomal RNA adenine dimethylase DKE39_002615 PF13091 PLD-like domain DKE39_002620 PF10518 TAT (twin-arginine translocation) pathway signal sequence DKE39_002620 PF00149 Calcineurin-like phosphoesterase DKE39_002630 PF00990 Diguanylate cyclase, GGDEF domain DKE39_002630 PF17152 Periplasmic sensor domain DKE39_002675 PF04273 Putative phosphatase (DUF442) DKE39_002675 PF00753 Metallo-beta-lactamase superfamily DKE39_002690 PF03061 Thioesterase superfamily DKE39_002700 PF04461 Protein of unknown function (DUF520) DKE39_002710 PF05430 S-adenosyl-L-methionine-dependent methyltransferase DKE39_002710 PF01266 FAD dependent oxidoreductase DKE39_002725 PF04279 Intracellular septation protein A DKE39_002760 PF02699 Preprotein translocase subunit DKE39_002795 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DKE39_002795 PF00512 His Kinase A (phospho-acceptor) domain DKE39_002795 PF07689 KaiB domain DKE39_002805 PF01063 Amino-transferase class IV DKE39_002830 PF13439 Glycosyltransferase Family 4 DKE39_002830 PF00534 Glycosyl transferases group 1 DKE39_002870 PF07715 TonB-dependent Receptor Plug Domain DKE39_002870 PF00593 TonB dependent receptor DKE39_002890 PF06146 Phosphate-starvation-inducible E DKE39_002925 PF00072 Response regulator receiver domain DKE39_002925 PF00486 Transcriptional regulatory protein, C terminal DKE39_002950 PF01923 Cobalamin adenosyltransferase DKE39_002960 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase DKE39_002965 PF00291 Pyridoxal-phosphate dependent enzyme DKE39_002990 PF00290 Tryptophan synthase alpha chain DKE39_002995 PF01039 Carboxyl transferase domain DKE39_003025 PF07517 SecA DEAD-like domain DKE39_003025 PF01043 SecA preprotein cross-linking domain DKE39_003025 PF02810 SEC-C motif DKE39_003025 PF07516 SecA Wing and Scaffold domain DKE39_003035 PF00083 Sugar (and other) transporter DKE39_003035 PF07690 Major Facilitator Superfamily DKE39_003075 PF12833 Helix-turn-helix domain DKE39_003075 PF02311 AraC-like ligand binding domain DKE39_003085 PF04966 Carbohydrate-selective porin, OprB family DKE39_003090 PF01011 PQQ enzyme repeat DKE39_003105 PF00893 Small Multidrug Resistance protein DKE39_003125 PF00691 OmpA family DKE39_003125 PF13505 Outer membrane protein beta-barrel domain DKE39_003135 PF00324 Amino acid permease DKE39_003155 PF01741 Large-conductance mechanosensitive channel, MscL DKE39_003170 PF06827 Zinc finger found in FPG and IleRS DKE39_003170 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain DKE39_003170 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain DKE39_003175 PF02245 Methylpurine-DNA glycosylase (MPG) DKE39_003180 PF07715 TonB-dependent Receptor Plug Domain DKE39_003180 PF00593 TonB dependent receptor DKE39_003195 PF00724 NADH:flavin oxidoreductase / NADH oxidase family DKE39_003230 PF04343 Protein of unknown function, DUF488 DKE39_003235 PF08274 PhnA Zinc-Ribbon DKE39_003235 PF03831 PhnA domain DKE39_003265 PF00072 Response regulator receiver domain DKE39_003270 PF00072 Response regulator receiver domain DKE39_003275 PF01584 CheW-like domain DKE39_003310 PF04304 Protein of unknown function (DUF454) DKE39_003315 PF17969 L,D-transpeptidase C-terminal domain DKE39_003315 PF03734 L,D-transpeptidase catalytic domain DKE39_003365 PF12805 FUSC-like inner membrane protein yccS DKE39_003400 PF00291 Pyridoxal-phosphate dependent enzyme DKE39_003400 PF13291 ACT domain DKE39_003435 PF02637 GatB domain DKE39_003435 PF02934 GatB/GatE catalytic domain DKE39_003445 PF02686 Glu-tRNAGln amidotransferase C subunit DKE39_003455 PF04085 rod shape-determining protein MreC DKE39_003460 PF04093 rod shape-determining protein MreD DKE39_003465 PF02545 Maf-like protein DKE39_003480 PF06974 Protein of unknown function (DUF1298) DKE39_003480 PF03007 Wax ester synthase-like Acyl-CoA acyltransferase domain DKE39_003485 PF01507 Phosphoadenosine phosphosulfate reductase family DKE39_003535 PF12833 Helix-turn-helix domain DKE39_003535 PF06719 AraC-type transcriptional regulator N-terminus DKE39_003545 PF01965 DJ-1/PfpI family DKE39_003565 PF00348 Polyprenyl synthetase DKE39_003570 PF04237 YjbR DKE39_003575 PF01145 SPFH domain / Band 7 family DKE39_003610 PF00072 Response regulator receiver domain DKE39_003610 PF00486 Transcriptional regulatory protein, C terminal DKE39_003615 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DKE39_003615 PF00512 His Kinase A (phospho-acceptor) domain DKE39_003615 PF08521 Two-component sensor kinase N-terminal DKE39_003680 PF01906 Putative heavy-metal-binding DKE39_003685 PF02321 Outer membrane efflux protein DKE39_003695 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion DKE39_003695 PF00529 HlyD membrane-fusion protein of T1SS DKE39_003700 PF01569 PAP2 superfamily DKE39_003710 PF00348 Polyprenyl synthetase DKE39_003720 PF00829 Ribosomal prokaryotic L21 protein DKE39_003725 PF01016 Ribosomal L27 protein DKE39_003740 PF02403 Seryl-tRNA synthetase N-terminal domain DKE39_003740 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) DKE39_003750 PF00588 SpoU rRNA Methylase family DKE39_003760 PF03358 NADPH-dependent FMN reductase DKE39_003780 PF03099 Biotin/lipoate A/B protein ligase family DKE39_003785 PF04359 Protein of unknown function (DUF493) DKE39_003820 PF00285 Citrate synthase, C-terminal domain DKE39_003830 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit DKE39_003835 PF02910 Fumarate reductase flavoprotein C-term DKE39_003835 PF00890 FAD binding domain DKE39_003860 PF02817 e3 binding domain DKE39_003860 PF00364 Biotin-requiring enzyme DKE39_003860 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) DKE39_003870 PF00549 CoA-ligase DKE39_003870 PF08442 ATP-grasp domain DKE39_003885 PF05661 Protein of unknown function (DUF808) DKE39_003895 PF00999 Sodium/hydrogen exchanger family DKE39_003945 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain DKE39_003950 PF00582 Universal stress protein family DKE39_003955 PF00132 Bacterial transferase hexapeptide (six repeats) DKE39_003960 PF01272 Transcription elongation factor, GreA/GreB, C-term DKE39_003960 PF03449 Transcription elongation factor, N-terminal DKE39_003970 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain DKE39_003970 PF00117 Glutamine amidotransferase class-I DKE39_003985 PF01985 CRS1 / YhbY (CRM) domain DKE39_003995 PF01434 Peptidase family M41 DKE39_003995 PF06480 FtsH Extracellular DKE39_003995 PF17862 AAA+ lid domain DKE39_003995 PF00004 ATPase family associated with various cellular activities (AAA) DKE39_004050 PF00083 Sugar (and other) transporter DKE39_004085 PF00166 Chaperonin 10 Kd subunit DKE39_004090 PF00118 TCP-1/cpn60 chaperonin family DKE39_004095 PF01219 Prokaryotic diacylglycerol kinase DKE39_004105 PF03009 Glycerophosphoryl diester phosphodiesterase family DKE39_004120 PF01435 Peptidase family M48 DKE39_004150 PF01272 Transcription elongation factor, GreA/GreB, C-term DKE39_004150 PF03449 Transcription elongation factor, N-terminal DKE39_004225 PF02634 FdhD/NarQ family DKE39_004230 PF06803 Protein of unknown function (DUF1232) DKE39_004240 PF00152 tRNA synthetases class II (D, K and N) DKE39_004250 PF18073 Rubredoxin metal binding domain DKE39_004255 PF00324 Amino acid permease DKE39_004270 PF01678 Diaminopimelate epimerase DKE39_004275 PF01810 LysE type translocator DKE39_004285 PF01012 Electron transfer flavoprotein domain DKE39_004290 PF00766 Electron transfer flavoprotein FAD-binding domain DKE39_004290 PF01012 Electron transfer flavoprotein domain DKE39_004295 PF03989 DNA gyrase C-terminal domain, beta-propeller DKE39_004295 PF00521 DNA gyrase/topoisomerase IV, subunit A DKE39_004330 PF13533 Biotin-lipoyl like DKE39_004340 PF00266 Aminotransferase class-V DKE39_004350 PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 DKE39_004365 PF00005 ABC transporter DKE39_004380 PF01343 Peptidase family S49 DKE39_004380 PF06965 Na+/H+ antiporter 1 DKE39_004385 PF12697 Alpha/beta hydrolase family DKE39_004390 PF00551 Formyl transferase DKE39_004395 PF02769 AIR synthase related protein, C-terminal domain DKE39_004395 PF00586 AIR synthase related protein, N-terminal domain DKE39_004450 PF00691 OmpA family DKE39_004490 PF01330 RuvA N terminal domain DKE39_004490 PF07499 RuvA, C-terminal domain DKE39_004500 PF02769 AIR synthase related protein, C-terminal domain DKE39_004500 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain DKE39_004500 PF18076 Formylglycinamide ribonucleotide amidotransferase N-terminal DKE39_004505 PF07690 Major Facilitator Superfamily DKE39_004510 PF01784 NIF3 (NGG1p interacting factor 3) DKE39_004520 PF00293 NUDIX domain DKE39_004520 PF01467 Cytidylyltransferase-like DKE39_004530 PF00578 AhpC/TSA family DKE39_004545 PF06508 Queuosine biosynthesis protein QueC DKE39_004565 PF03466 LysR substrate binding domain DKE39_004565 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DKE39_004575 PF00528 Binding-protein-dependent transport system inner membrane component DKE39_004580 PF00528 Binding-protein-dependent transport system inner membrane component DKE39_004605 PF02223 Thymidylate kinase DKE39_004615 PF02910 Fumarate reductase flavoprotein C-term DKE39_004615 PF00890 FAD binding domain DKE39_004620 PF13180 PDZ domain DKE39_004645 PF00035 Double-stranded RNA binding motif DKE39_004645 PF14622 Ribonuclease-III-like DKE39_004660 PF02565 Recombination protein O C terminal DKE39_004660 PF11967 Recombination protein O N terminal DKE39_004665 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ DKE39_004675 PF00106 short chain dehydrogenase DKE39_004725 PF17757 UvrB interaction domain DKE39_004725 PF02151 UvrB/uvrC motif DKE39_004725 PF04851 Type III restriction enzyme, res subunit DKE39_004725 PF00271 Helicase conserved C-terminal domain DKE39_004725 PF12344 Ultra-violet resistance protein B DKE39_004755 PF01926 50S ribosome-binding GTPase DKE39_004755 PF01018 GTP1/OBG DKE39_004760 PF01472 PUA domain DKE39_004760 PF00696 Amino acid kinase family DKE39_004780 PF03060 Nitronate monooxygenase DKE39_004830 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase DKE39_004840 PF07943 Penicillin-binding protein 5, C-terminal domain DKE39_004840 PF00768 D-alanyl-D-alanine carboxypeptidase DKE39_004885 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DKE39_004885 PF03466 LysR substrate binding domain DKE39_004895 PF02567 Phenazine biosynthesis-like protein DKE39_004930 PF02581 Thiamine monophosphate synthase DKE39_004935 PF00202 Aminotransferase class-III DKE39_004945 PF00849 RNA pseudouridylate synthase DKE39_004970 PF00487 Fatty acid desaturase DKE39_004980 PF17754 MftR C-terminal domain DKE39_004980 PF00440 Bacterial regulatory proteins, tetR family DKE39_004990 PF00202 Aminotransferase class-III DKE39_005000 PF00171 Aldehyde dehydrogenase family DKE39_005015 PF00324 Amino acid permease DKE39_005020 PF12849 PBP superfamily domain DKE39_005035 PF00005 ABC transporter DKE39_005055 PF08328 Adenylosuccinate lyase C-terminal DKE39_005055 PF00206 Lyase DKE39_005095 PF01975 Survival protein SurE DKE39_005100 PF01476 LysM domain DKE39_005100 PF01551 Peptidase family M23 DKE39_005105 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DKE39_005105 PF03466 LysR substrate binding domain DKE39_005120 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily DKE39_005130 PF01197 Ribosomal protein L31 DKE39_005150 PF01132 Elongation factor P (EF-P) OB domain DKE39_005150 PF09285 Elongation factor P, C-terminal DKE39_005150 PF08207 Elongation factor P (EF-P) KOW-like domain DKE39_005210 PF00171 Aldehyde dehydrogenase family DKE39_005220 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DKE39_005220 PF03466 LysR substrate binding domain DKE39_005245 PF07992 Pyridine nucleotide-disulphide oxidoreductase DKE39_005245 PF18113 Rubredoxin binding C-terminal domain DKE39_005270 PF00892 EamA-like transporter family DKE39_005280 PF02604 Antitoxin Phd_YefM, type II toxin-antitoxin system DKE39_005290 PF13378 Enolase C-terminal domain-like DKE39_005290 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain DKE39_005295 PF08240 Alcohol dehydrogenase GroES-like domain DKE39_005295 PF08990 Erythronolide synthase docking DKE39_005295 PF00698 Acyl transferase domain DKE39_005295 PF16197 Ketoacyl-synthetase C-terminal extension DKE39_005295 PF00109 Beta-ketoacyl synthase, N-terminal domain DKE39_005295 PF02801 Beta-ketoacyl synthase, C-terminal domain DKE39_005295 PF08659 KR domain DKE39_005295 PF00550 Phosphopantetheine attachment site DKE39_005295 PF14765 Polyketide synthase dehydratase DKE39_005295 PF09277 Erythronolide synthase, docking DKE39_005320 PF17954 Quercetinase C-terminal cupin domain DKE39_005320 PF02678 Pirin DKE39_005330 PF13309 HTH domain DKE39_005330 PF08348 YheO-like PAS domain DKE39_005355 PF01032 FecCD transport family DKE39_005360 PF00005 ABC transporter DKE39_005375 PF13434 L-lysine 6-monooxygenase (NADPH-requiring) DKE39_005415 PF00975 Thioesterase domain DKE39_005425 PF00425 chorismate binding enzyme DKE39_005435 PF01208 Uroporphyrinogen decarboxylase (URO-D) DKE39_005440 PF05675 Protein of unknown function (DUF817) DKE39_005495 PF00591 Glycosyl transferase family, a/b domain DKE39_005495 PF02885 Glycosyl transferase family, helical bundle domain DKE39_005510 PF00117 Glutamine amidotransferase class-I DKE39_005535 PF01040 UbiA prenyltransferase family DKE39_005570 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain DKE39_005570 PF02777 Iron/manganese superoxide dismutases, C-terminal domain DKE39_005585 PF12627 Probable RNA and SrmB- binding site of polymerase A DKE39_005585 PF01743 Poly A polymerase head domain DKE39_005600 PF04452 RNA methyltransferase DKE39_005630 PF04055 Radical SAM superfamily DKE39_005635 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain DKE39_005635 PF07992 Pyridine nucleotide-disulphide oxidoreductase DKE39_005655 PF00557 Metallopeptidase family M24 DKE39_005660 PF00318 Ribosomal protein S2 DKE39_005695 PF03330 Lytic transglycolase DKE39_005695 PF05036 Sporulation related domain DKE39_005700 PF13406 Transglycosylase SLT domain DKE39_005705 PF01098 Cell cycle protein DKE39_005725 PF00005 ABC transporter DKE39_005780 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DKE39_005780 PF03466 LysR substrate binding domain DKE39_005795 PF00528 Binding-protein-dependent transport system inner membrane component DKE39_005805 PF00893 Small Multidrug Resistance protein DKE39_005810 PF00037 4Fe-4S binding domain DKE39_005825 PF02567 Phenazine biosynthesis-like protein DKE39_005835 PF18389 TrmO C-terminal domain DKE39_005835 PF01980 tRNA-methyltransferase O DKE39_005880 PF00912 Transglycosylase DKE39_005880 PF00905 Penicillin binding protein transpeptidase domain DKE39_005880 PF14814 Bifunctional transglycosylase second domain DKE39_005890 PF07023 Protein of unknown function (DUF1315) DKE39_005895 PF00591 Glycosyl transferase family, a/b domain DKE39_005895 PF02885 Glycosyl transferase family, helical bundle domain DKE39_005905 PF00375 Sodium:dicarboxylate symporter family DKE39_005920 PF01842 ACT domain DKE39_005920 PF01817 Chorismate mutase type II DKE39_005920 PF00800 Prephenate dehydratase DKE39_005935 PF01546 Peptidase family M20/M25/M40 DKE39_005935 PF07687 Peptidase dimerisation domain DKE39_005950 PF03883 Peroxide stress protein YaaA DKE39_005970 PF04241 Protein of unknown function (DUF423) DKE39_005985 PF00313 'Cold-shock' DNA-binding domain DKE39_005990 PF00270 DEAD/DEAH box helicase DKE39_005990 PF00271 Helicase conserved C-terminal domain DKE39_006000 PF00881 Nitroreductase family DKE39_006005 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus DKE39_006005 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus DKE39_006025 PF01180 Dihydroorotate dehydrogenase DKE39_006035 PF00156 Phosphoribosyl transferase domain DKE39_006060 PF09424 Yqey-like protein DKE39_006065 PF01165 Ribosomal protein S21 DKE39_006115 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DKE39_006115 PF03466 LysR substrate binding domain DKE39_006130 PF00324 Amino acid permease DKE39_006175 PF13610 DDE domain DKE39_006180 PF00589 Phage integrase family DKE39_006180 PF13495 Phage integrase, N-terminal SAM-like domain DKE39_006190 PF00132 Bacterial transferase hexapeptide (six repeats) DKE39_006195 PF13427 Domain of unknown function (DUF4111) DKE39_006195 PF01909 Nucleotidyltransferase domain DKE39_006200 PF00893 Small Multidrug Resistance protein DKE39_006205 PF00809 Pterin binding enzyme DKE39_006225 PF07091 Ribosomal RNA methyltransferase (FmrO) DKE39_006285 PF13610 DDE domain DKE39_006300 PF00375 Sodium:dicarboxylate symporter family DKE39_006310 PF16123 Hydroxyacylglutathione hydrolase C-terminus DKE39_006310 PF00753 Metallo-beta-lactamase superfamily DKE39_006315 PF00528 Binding-protein-dependent transport system inner membrane component DKE39_006335 PF02142 MGS-like domain DKE39_006335 PF01808 AICARFT/IMPCHase bienzyme DKE39_006340 PF02954 Bacterial regulatory protein, Fis family DKE39_006360 PF01134 Glucose inhibited division protein A DKE39_006360 PF13932 GidA associated domain DKE39_006380 PF01841 Transglutaminase-like superfamily DKE39_006380 PF08379 Bacterial transglutaminase-like N-terminal region DKE39_006400 PF01281 Ribosomal protein L9, N-terminal domain DKE39_006400 PF03948 Ribosomal protein L9, C-terminal domain DKE39_006405 PF01084 Ribosomal protein S18 DKE39_006410 PF01250 Ribosomal protein S6 DKE39_006420 PF03626 Prokaryotic Cytochrome C oxidase subunit IV DKE39_006425 PF00510 Cytochrome c oxidase subunit III DKE39_006430 PF00115 Cytochrome C and Quinol oxidase polypeptide I DKE39_006445 PF02896 PEP-utilising enzyme, TIM barrel domain DKE39_006445 PF00391 PEP-utilising enzyme, mobile domain DKE39_006445 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain DKE39_006450 PF03618 Kinase/pyrophosphorylase DKE39_006470 PF13994 PgaD-like protein DKE39_006480 PF00296 Luciferase-like monooxygenase DKE39_006510 PF00472 RF-1 domain DKE39_006510 PF03462 PCRF domain DKE39_006515 PF13847 Methyltransferase domain DKE39_006515 PF17827 PrmC N-terminal domain DKE39_006520 PF00528 Binding-protein-dependent transport system inner membrane component DKE39_006525 PF09084 NMT1/THI5 like DKE39_006545 PF00501 AMP-binding enzyme DKE39_006545 PF13193 AMP-binding enzyme C-terminal domain DKE39_006550 PF01613 Flavin reductase like domain DKE39_006555 PF00899 ThiF family DKE39_006585 PF02669 K+-transporting ATPase, c chain DKE39_006610 PF03232 Ubiquinone biosynthesis protein COQ7 DKE39_006685 PF04284 Protein of unknown function (DUF441) DKE39_006710 PF00849 RNA pseudouridylate synthase DKE39_006710 PF01479 S4 domain DKE39_006730 PF17209 Hfq protein DKE39_006740 PF00881 Nitroreductase family DKE39_006755 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD DKE39_006760 PF00749 tRNA synthetases class I (E and Q), catalytic domain DKE39_006760 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain DKE39_006765 PF00117 Glutamine amidotransferase class-I DKE39_006765 PF00958 GMP synthase C terminal domain DKE39_006765 PF02540 NAD synthase DKE39_006770 PF05985 Ethanolamine ammonia-lyase light chain (EutC) DKE39_006800 PF00465 Iron-containing alcohol dehydrogenase DKE39_006820 PF02110 Hydroxyethylthiazole kinase family DKE39_006835 PF11940 Domain of unknown function (DUF3458) Ig-like fold DKE39_006835 PF17432 Domain of unknown function (DUF3458_C) ARM repeats DKE39_006835 PF01433 Peptidase family M1 domain DKE39_006855 PF01817 Chorismate mutase type II DKE39_006885 PF00924 Mechanosensitive ion channel DKE39_006920 PF00593 TonB dependent receptor DKE39_006920 PF07715 TonB-dependent Receptor Plug Domain DKE39_006945 PF00582 Universal stress protein family DKE39_006990 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DKE39_006990 PF03466 LysR substrate binding domain DKE39_007030 PF12170 DNA polymerase III tau subunit V interacting with alpha DKE39_007030 PF12168 DNA polymerase III subunits tau domain IV DnaB-binding DKE39_007030 PF12169 DNA polymerase III subunits gamma and tau domain III DKE39_007035 PF05506 Domain of unknown function (DUF756) DKE39_007035 PF04185 Phosphoesterase family DKE39_007040 PF03061 Thioesterase superfamily DKE39_007045 PF00465 Iron-containing alcohol dehydrogenase DKE39_007055 PF01451 Low molecular weight phosphotyrosine protein phosphatase DKE39_007060 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain DKE39_007060 PF01565 FAD binding domain DKE39_007075 PF01645 Conserved region in glutamate synthase DKE39_007195 PF00772 DnaB-like helicase N terminal domain DKE39_007195 PF03796 DnaB-like helicase C terminal domain DKE39_007195 PF14528 LAGLIDADG-like domain DKE39_007505 PF01726 LexA DNA binding domain DKE39_007505 PF00717 Peptidase S24-like DKE39_007785 PF01810 LysE type translocator DKE39_007790 PF03466 LysR substrate binding domain DKE39_007790 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DKE39_007805 PF02021 Uncharacterised protein family UPF0102 DKE39_007810 PF04972 BON domain DKE39_007820 PF00293 NUDIX domain DKE39_007820 PF09297 NADH pyrophosphatase zinc ribbon domain DKE39_007860 PF00724 NADH:flavin oxidoreductase / NADH oxidase family DKE39_007860 PF07992 Pyridine nucleotide-disulphide oxidoreductase DKE39_007865 PF07715 TonB-dependent Receptor Plug Domain DKE39_007865 PF00593 TonB dependent receptor DKE39_008010 PF00392 Bacterial regulatory proteins, gntR family DKE39_008010 PF07729 FCD domain DKE39_008040 PF00324 Amino acid permease DKE39_008045 PF13610 DDE domain DKE39_008055 PF02796 Helix-turn-helix domain of resolvase DKE39_008055 PF00239 Resolvase, N terminal domain DKE39_008070 PF13610 DDE domain DKE39_008085 PF13610 DDE domain DKE39_008100 PF01636 Phosphotransferase enzyme family DKE39_008105 PF13610 DDE domain DKE39_008120 PF17954 Quercetinase C-terminal cupin domain DKE39_008120 PF02678 Pirin DKE39_008145 PF00860 Permease family DKE39_008150 PF00962 Adenosine/AMP deaminase DKE39_008155 PF01292 Prokaryotic cytochrome b561 DKE39_008170 PF02599 Global regulator protein family DKE39_008175 PF00696 Amino acid kinase family DKE39_008175 PF01842 ACT domain DKE39_008175 PF13840 ACT domain DKE39_008190 PF13393 Histidyl-tRNA synthetase DKE39_008195 PF00709 Adenylosuccinate synthetase DKE39_008220 PF13545 Crp-like helix-turn-helix domain DKE39_008220 PF00027 Cyclic nucleotide-binding domain DKE39_008225 PF02566 OsmC-like protein DKE39_008255 PF10672 S-adenosylmethionine-dependent methyltransferase DKE39_008255 PF01170 Putative RNA methylase family UPF0020 DKE39_008255 PF02926 THUMP domain DKE39_008275 PF13488 Glycine zipper DKE39_008275 PF00691 OmpA family DKE39_008285 PF13417 Glutathione S-transferase, N-terminal domain DKE39_008285 PF00043 Glutathione S-transferase, C-terminal domain DKE39_008290 PF02390 Putative methyltransferase DKE39_008315 PF13192 Thioredoxin domain DKE39_008315 PF07992 Pyridine nucleotide-disulphide oxidoreductase DKE39_008335 PF10417 C-terminal domain of 1-Cys peroxiredoxin DKE39_008335 PF00578 AhpC/TSA family DKE39_008340 PF11898 Domain of unknown function (DUF3418) DKE39_008340 PF04408 Helicase associated domain (HA2) DKE39_008340 PF00271 Helicase conserved C-terminal domain DKE39_008340 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold DKE39_008340 PF00270 DEAD/DEAH box helicase DKE39_008350 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III DKE39_008350 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal DKE39_008375 PF00106 short chain dehydrogenase DKE39_008390 PF00848 Ring hydroxylating alpha subunit (catalytic domain) DKE39_008390 PF00355 Rieske [2Fe-2S] domain DKE39_008395 PF03466 LysR substrate binding domain DKE39_008395 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DKE39_008410 PF00376 MerR family regulatory protein DKE39_008410 PF09278 MerR, DNA binding DKE39_008450 PF02601 Exonuclease VII, large subunit DKE39_008450 PF13742 OB-fold nucleic acid binding domain DKE39_008500 PF03807 NADP oxidoreductase coenzyme F420-dependent DKE39_008500 PF14748 Pyrroline-5-carboxylate reductase dimerisation DKE39_008530 PF07690 Major Facilitator Superfamily DKE39_008535 PF01638 HxlR-like helix-turn-helix DKE39_008575 PF00571 CBS domain DKE39_008575 PF01380 SIS domain DKE39_008590 PF03968 OstA-like protein DKE39_008595 PF00005 ABC transporter DKE39_008595 PF12399 Branched-chain amino acid ATP-binding cassette transporter DKE39_008620 PF00132 Bacterial transferase hexapeptide (six repeats) DKE39_008640 PF00037 4Fe-4S binding domain DKE39_008640 PF11953 Domain of unknown function (DUF3470) DKE39_008655 PF01037 Lrp/AsnC ligand binding domain DKE39_008660 PF00892 EamA-like transporter family DKE39_008675 PF03279 Bacterial lipid A biosynthesis acyltransferase DKE39_008775 PF01566 Natural resistance-associated macrophage protein DKE39_008780 PF03746 LamB/YcsF family DKE39_008785 PF07286 Protein of unknown function (DUF1445) DKE39_008835 PF13823 Alcohol dehydrogenase GroES-associated DKE39_008835 PF00107 Zinc-binding dehydrogenase DKE39_008835 PF08240 Alcohol dehydrogenase GroES-like domain DKE39_008855 PF02525 Flavodoxin-like fold DKE39_008875 PF08753 NikR C terminal nickel binding domain DKE39_008875 PF01402 Ribbon-helix-helix protein, copG family DKE39_008885 PF00497 Bacterial extracellular solute-binding proteins, family 3 DKE39_008965 PF00691 OmpA family DKE39_008965 PF01389 OmpA-like transmembrane domain DKE39_009005 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DKE39_009005 PF03466 LysR substrate binding domain DKE39_009015 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region DKE39_009050 PF00376 MerR family regulatory protein DKE39_009050 PF09278 MerR, DNA binding DKE39_009075 PF00392 Bacterial regulatory proteins, gntR family DKE39_009115 PF13520 Amino acid permease DKE39_009130 PF05138 Phenylacetic acid catabolic protein DKE39_009135 PF06243 Phenylacetic acid degradation B DKE39_009145 PF01883 Iron-sulfur cluster assembly protein DKE39_009150 PF00970 Oxidoreductase FAD-binding domain DKE39_009150 PF00175 Oxidoreductase NAD-binding domain DKE39_009150 PF00111 2Fe-2S iron-sulfur cluster binding domain DKE39_009155 PF00378 Enoyl-CoA hydratase/isomerase DKE39_009160 PF00378 Enoyl-CoA hydratase/isomerase DKE39_009190 PF03061 Thioesterase superfamily DKE39_009235 PF01292 Prokaryotic cytochrome b561 DKE39_009255 PF12697 Alpha/beta hydrolase family DKE39_009260 PF01613 Flavin reductase like domain DKE39_009265 PF00296 Luciferase-like monooxygenase DKE39_009295 PF02627 Carboxymuconolactone decarboxylase family DKE39_009305 PF02525 Flavodoxin-like fold DKE39_009315 PF01494 FAD binding domain DKE39_009320 PF07702 UTRA domain DKE39_009320 PF00392 Bacterial regulatory proteins, gntR family DKE39_009340 PF01266 FAD dependent oxidoreductase DKE39_009345 PF00266 Aminotransferase class-V DKE39_009365 PF02515 CoA-transferase family III DKE39_009370 PF09339 IclR helix-turn-helix domain DKE39_009390 PF09339 IclR helix-turn-helix domain DKE39_009450 PF02771 Acyl-CoA dehydrogenase, N-terminal domain DKE39_009450 PF00441 Acyl-CoA dehydrogenase, C-terminal domain DKE39_009450 PF02770 Acyl-CoA dehydrogenase, middle domain DKE39_009450 PF12806 Acetyl-CoA dehydrogenase C-terminal like DKE39_009470 PF00682 HMGL-like DKE39_009475 PF00364 Biotin-requiring enzyme DKE39_009475 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain DKE39_009475 PF00289 Biotin carboxylase, N-terminal domain DKE39_009475 PF02785 Biotin carboxylase C-terminal domain DKE39_009490 PF00441 Acyl-CoA dehydrogenase, C-terminal domain DKE39_009490 PF02770 Acyl-CoA dehydrogenase, middle domain DKE39_009490 PF02771 Acyl-CoA dehydrogenase, N-terminal domain DKE39_009495 PF00440 Bacterial regulatory proteins, tetR family DKE39_009590 PF00717 Peptidase S24-like DKE39_009600 PF13404 AsnC-type helix-turn-helix domain DKE39_009600 PF01037 Lrp/AsnC ligand binding domain DKE39_009620 PF00072 Response regulator receiver domain DKE39_009655 PF00497 Bacterial extracellular solute-binding proteins, family 3 DKE39_009665 PF03466 LysR substrate binding domain DKE39_009665 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DKE39_009670 PF01810 LysE type translocator DKE39_009690 PF00581 Rhodanese-like domain DKE39_009700 PF03466 LysR substrate binding domain DKE39_009700 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DKE39_009705 PF02798 Glutathione S-transferase, N-terminal domain DKE39_009710 PF14834 Glutathione S-transferase, C-terminal domain DKE39_009710 PF02798 Glutathione S-transferase, N-terminal domain DKE39_009715 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DKE39_009715 PF03466 LysR substrate binding domain DKE39_009720 PF03788 LrgA family DKE39_009725 PF04172 LrgB-like family DKE39_009755 PF01874 ATP:dephospho-CoA triphosphoribosyl transferase DKE39_009765 PF01039 Carboxyl transferase domain DKE39_009775 PF10620 Phosphoribosyl-dephospho-CoA transferase MdcG DKE39_009780 PF00698 Acyl transferase domain DKE39_009800 PF00392 Bacterial regulatory proteins, gntR family DKE39_009800 PF00155 Aminotransferase class I and II DKE39_009825 PF02771 Acyl-CoA dehydrogenase, N-terminal domain DKE39_009825 PF02770 Acyl-CoA dehydrogenase, middle domain DKE39_009825 PF08028 Acyl-CoA dehydrogenase, C-terminal domain DKE39_009835 PF00083 Sugar (and other) transporter DKE39_009845 PF04069 Substrate binding domain of ABC-type glycine betaine transport system DKE39_009850 PF00005 ABC transporter DKE39_009860 PF02668 Taurine catabolism dioxygenase TauD, TfdA family DKE39_009895 PF13382 Adenine deaminase C-terminal domain DKE39_009895 PF01979 Amidohydrolase family DKE39_009910 PF01022 Bacterial regulatory protein, arsR family DKE39_009915 PF01758 Sodium Bile acid symporter family DKE39_009920 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DKE39_009920 PF03466 LysR substrate binding domain DKE39_009935 PF07992 Pyridine nucleotide-disulphide oxidoreductase DKE39_009935 PF13192 Thioredoxin domain DKE39_009965 PF17763 Glutaminase/Asparaginase C-terminal domain DKE39_009965 PF00710 Asparaginase, N-terminal DKE39_009985 PF00255 Glutathione peroxidase DKE39_009990 PF12852 Cupin DKE39_009990 PF12833 Helix-turn-helix domain DKE39_010000 PF00155 Aminotransferase class I and II DKE39_010010 PF02222 ATP-grasp domain DKE39_010025 PF03591 AzlC protein DKE39_010060 PF00005 ABC transporter DKE39_010060 PF09383 NIL domain DKE39_010070 PF03180 NLPA lipoprotein DKE39_010085 PF02771 Acyl-CoA dehydrogenase, N-terminal domain DKE39_010085 PF08028 Acyl-CoA dehydrogenase, C-terminal domain DKE39_010100 PF00528 Binding-protein-dependent transport system inner membrane component DKE39_010110 PF00005 ABC transporter DKE39_010120 PF01037 Lrp/AsnC ligand binding domain DKE39_010140 PF03483 B3/4 domain DKE39_010140 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain DKE39_010140 PF01588 Putative tRNA binding domain DKE39_010140 PF03484 tRNA synthetase B5 domain DKE39_010140 PF03147 Ferredoxin-fold anticodon binding domain DKE39_010375 PF01709 Transcriptional regulator DKE39_010410 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DKE39_010410 PF03466 LysR substrate binding domain DKE39_010485 PF08331 Domain of unknown function (DUF1730) DKE39_010490 PF01256 Carbohydrate kinase DKE39_010490 PF03853 YjeF-related protein N-terminus DKE39_010535 PF02772 S-adenosylmethionine synthetase, central domain DKE39_010535 PF02773 S-adenosylmethionine synthetase, C-terminal domain DKE39_010535 PF00438 S-adenosylmethionine synthetase, N-terminal domain DKE39_010540 PF02779 Transketolase, pyrimidine binding domain DKE39_010540 PF00456 Transketolase, thiamine diphosphate binding domain DKE39_010540 PF02780 Transketolase, C-terminal domain DKE39_010580 PF00171 Aldehyde dehydrogenase family DKE39_010580 PF01619 Proline dehydrogenase DKE39_010580 PF14850 DNA-binding domain of Proline dehydrogenase DKE39_010580 PF18327 Proline utilization A proline dehydrogenase N-terminal domain DKE39_010585 PF01037 Lrp/AsnC ligand binding domain DKE39_010590 PF00474 Sodium:solute symporter family DKE39_010595 PF02146 Sir2 family DKE39_010600 PF01597 Glycine cleavage H-protein DKE39_010605 PF12833 Helix-turn-helix domain DKE39_010605 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term DKE39_010615 PF00005 ABC transporter DKE39_010615 PF00664 ABC transporter transmembrane region DKE39_010625 PF06912 Protein of unknown function (DUF1275) DKE39_010630 PF00375 Sodium:dicarboxylate symporter family DKE39_010650 PF02545 Maf-like protein DKE39_010660 PF00162 Phosphoglycerate kinase DKE39_010670 PF01116 Fructose-bisphosphate aldolase class-II DKE39_010680 PF04453 LPS transport system D DKE39_010680 PF03968 OstA-like protein DKE39_010690 PF00483 Nucleotidyl transferase DKE39_010700 PF13614 AAA domain DKE39_010705 PF02195 ParB-like nuclease domain DKE39_010705 PF17762 HTH domain found in ParB protein DKE39_010720 PF00664 ABC transporter transmembrane region DKE39_010720 PF00005 ABC transporter DKE39_010730 PF02348 Cytidylyltransferase DKE39_010760 PF07963 Prokaryotic N-terminal methylation motif DKE39_010760 PF02501 Type II secretion system (T2SS), protein I DKE39_010790 PF14437 MafB19-like deaminase DKE39_010800 PF02224 Cytidylate kinase DKE39_010810 PF00216 Bacterial DNA-binding protein DKE39_010855 PF02472 Biopolymer transport protein ExbD/TolR DKE39_010865 PF01618 MotA/TolQ/ExbB proton channel family DKE39_010875 PF00593 TonB dependent receptor DKE39_010875 PF07715 TonB-dependent Receptor Plug Domain DKE39_010905 PF00528 Binding-protein-dependent transport system inner membrane component DKE39_010945 PF03737 Aldolase/RraA DKE39_010990 PF00226 DnaJ domain DKE39_010990 PF07743 HSCB C-terminal oligomerisation domain DKE39_011005 PF00266 Aminotransferase class-V DKE39_011010 PF02082 Transcriptional regulator DKE39_011035 PF12852 Cupin DKE39_011035 PF12833 Helix-turn-helix domain DKE39_011040 PF00487 Fatty acid desaturase DKE39_011050 PF00441 Acyl-CoA dehydrogenase, C-terminal domain DKE39_011050 PF02770 Acyl-CoA dehydrogenase, middle domain DKE39_011050 PF02771 Acyl-CoA dehydrogenase, N-terminal domain DKE39_011065 PF04073 Aminoacyl-tRNA editing domain DKE39_011150 PF02283 Cobinamide kinase / cobinamide phosphate guanyltransferase DKE39_011215 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion DKE39_011255 PF01230 HIT domain DKE39_011290 PF00561 alpha/beta hydrolase fold DKE39_011295 PF01053 Cys/Met metabolism PLP-dependent enzyme DKE39_011335 PF05166 YcgL domain DKE39_011360 PF05175 Methyltransferase small domain DKE39_011370 PF00990 Diguanylate cyclase, GGDEF domain DKE39_011370 PF08448 PAS fold DKE39_011395 PF02780 Transketolase, C-terminal domain DKE39_011395 PF02779 Transketolase, pyrimidine binding domain DKE39_011410 PF00106 short chain dehydrogenase DKE39_011415 PF00107 Zinc-binding dehydrogenase DKE39_011415 PF08240 Alcohol dehydrogenase GroES-like domain DKE39_011430 PF00753 Metallo-beta-lactamase superfamily DKE39_011430 PF04273 Putative phosphatase (DUF442) DKE39_011440 PF01925 Sulfite exporter TauE/SafE DKE39_011460 PF01638 HxlR-like helix-turn-helix DKE39_011500 PF00005 ABC transporter DKE39_011520 PF07715 TonB-dependent Receptor Plug Domain DKE39_011520 PF00593 TonB dependent receptor DKE39_011525 PF00206 Lyase DKE39_011525 PF10415 Fumarase C C-terminus DKE39_011540 PF03466 LysR substrate binding domain DKE39_011540 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DKE39_011550 PF00108 Thiolase, N-terminal domain DKE39_011550 PF02803 Thiolase, C-terminal domain DKE39_011560 PF01144 Coenzyme A transferase DKE39_011600 PF07690 Major Facilitator Superfamily DKE39_011620 PF01613 Flavin reductase like domain DKE39_011630 PF14525 AraC-binding-like domain DKE39_011630 PF12833 Helix-turn-helix domain DKE39_011640 PF00866 Ring hydroxylating beta subunit DKE39_011650 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DKE39_011650 PF03459 TOBE domain DKE39_011660 PF00528 Binding-protein-dependent transport system inner membrane component DKE39_011675 PF00857 Isochorismatase family DKE39_011675 PF00550 Phosphopantetheine attachment site DKE39_011685 PF00149 Calcineurin-like phosphoesterase DKE39_011695 PF08042 PqqA family DKE39_011700 PF12706 Beta-lactamase superfamily domain DKE39_011705 PF03070 TENA/THI-4/PQQC family DKE39_011710 PF05402 Coenzyme PQQ synthesis protein D (PqqD) DKE39_011720 PF01244 Membrane dipeptidase (Peptidase family M19) DKE39_011740 PF13091 PLD-like domain DKE39_011765 PF08240 Alcohol dehydrogenase GroES-like domain DKE39_011765 PF00107 Zinc-binding dehydrogenase DKE39_011780 PF00577 Outer membrane usher protein DKE39_011780 PF13953 PapC C-terminal domain DKE39_011780 PF13954 PapC N-terminal domain DKE39_011795 PF16970 Type-1 fimbrial protein, A DKE39_011840 PF12146 Serine aminopeptidase, S33 DKE39_011855 PF00529 HlyD membrane-fusion protein of T1SS DKE39_011855 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion DKE39_011880 PF12146 Serine aminopeptidase, S33 DKE39_011945 PF04607 Region found in RelA / SpoT proteins DKE39_011945 PF13291 ACT domain DKE39_011945 PF02824 TGS domain DKE39_011980 PF07690 Major Facilitator Superfamily DKE39_011990 PF01425 Amidase DKE39_012115 PF08240 Alcohol dehydrogenase GroES-like domain DKE39_012115 PF00107 Zinc-binding dehydrogenase DKE39_012165 PF00171 Aldehyde dehydrogenase family DKE39_012170 PF00171 Aldehyde dehydrogenase family DKE39_012215 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain DKE39_012215 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain DKE39_012215 PF01842 ACT domain DKE39_012270 PF07690 Major Facilitator Superfamily DKE39_012340 PF00857 Isochorismatase family DKE39_012350 PF00440 Bacterial regulatory proteins, tetR family DKE39_012350 PF08359 YsiA-like protein, C-terminal region DKE39_012355 PF12706 Beta-lactamase superfamily domain DKE39_012365 PF07992 Pyridine nucleotide-disulphide oxidoreductase DKE39_012375 PF09278 MerR, DNA binding DKE39_012375 PF00376 MerR family regulatory protein DKE39_012380 PF01872 RibD C-terminal domain DKE39_012395 PF01047 MarR family DKE39_012440 PF00107 Zinc-binding dehydrogenase DKE39_012440 PF08240 Alcohol dehydrogenase GroES-like domain DKE39_012490 PF00171 Aldehyde dehydrogenase family DKE39_012505 PF00920 Dehydratase family DKE39_012510 PF00392 Bacterial regulatory proteins, gntR family DKE39_012510 PF07729 FCD domain DKE39_012525 PF13378 Enolase C-terminal domain-like DKE39_012525 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain DKE39_012530 PF02426 Muconolactone delta-isomerase DKE39_012535 PF04444 Catechol dioxygenase N terminus DKE39_012535 PF00775 Dioxygenase DKE39_012545 PF01144 Coenzyme A transferase DKE39_012560 PF01804 Penicillin amidase DKE39_012585 PF01613 Flavin reductase like domain DKE39_012590 PF01613 Flavin reductase like domain DKE39_012650 PF00106 short chain dehydrogenase DKE39_012680 PF00753 Metallo-beta-lactamase superfamily DKE39_012690 PF04143 Sulphur transport DKE39_012700 PF01011 PQQ enzyme repeat DKE39_012700 PF13360 PQQ-like domain DKE39_012705 PF04966 Carbohydrate-selective porin, OprB family DKE39_012720 PF00775 Dioxygenase DKE39_012730 PF02627 Carboxymuconolactone decarboxylase family DKE39_012735 PF07690 Major Facilitator Superfamily DKE39_012745 PF10397 Adenylosuccinate lyase C-terminus DKE39_012745 PF00206 Lyase DKE39_012755 PF01144 Coenzyme A transferase DKE39_012765 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase DKE39_012770 PF04977 Septum formation initiator DKE39_012775 PF04239 Protein of unknown function (DUF421) DKE39_012780 PF03952 Enolase, N-terminal domain DKE39_012780 PF00113 Enolase, C-terminal TIM barrel domain DKE39_012790 PF00117 Glutamine amidotransferase class-I DKE39_012790 PF06418 CTP synthase N-terminus DKE39_012820 PF00724 NADH:flavin oxidoreductase / NADH oxidase family DKE39_012820 PF07992 Pyridine nucleotide-disulphide oxidoreductase DKE39_012835 PF00793 DAHP synthetase I family DKE39_012840 PF02694 Uncharacterised BCR, YnfA/UPF0060 family DKE39_012850 PF02617 ATP-dependent Clp protease adaptor protein ClpS DKE39_012875 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) DKE39_012910 PF00294 pfkB family carbohydrate kinase DKE39_012940 PF08173 Membrane bound YbgT-like protein DKE39_012955 PF09829 Uncharacterized protein conserved in bacteria (DUF2057) DKE39_012990 PF00478 IMP dehydrogenase / GMP reductase domain DKE39_012990 PF00571 CBS domain DKE39_013000 PF00462 Glutaredoxin DKE39_013010 PF03466 LysR substrate binding domain DKE39_013010 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DKE39_013015 PF00557 Metallopeptidase family M24 DKE39_013090 PF02586 SOS response associated peptidase (SRAP) DKE39_013095 PF01740 STAS domain DKE39_013095 PF00916 Sulfate permease family DKE39_013105 PF05922 Peptidase inhibitor I9 DKE39_013105 PF00082 Subtilase family DKE39_013115 PF00324 Amino acid permease DKE39_013120 PF00266 Aminotransferase class-V DKE39_013155 PF01479 S4 domain DKE39_013160 PF00154 recA bacterial DNA recombination protein DKE39_013165 PF02631 RecX family DKE39_013180 PF00132 Bacterial transferase hexapeptide (six repeats) DKE39_013180 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 DKE39_013235 PF00919 Uncharacterized protein family UPF0004 DKE39_013235 PF04055 Radical SAM superfamily DKE39_013235 PF18693 TRAM domain DKE39_013250 PF00440 Bacterial regulatory proteins, tetR family DKE39_013265 PF02542 YgbB family DKE39_013305 PF16363 GDP-mannose 4,6 dehydratase DKE39_013310 PF02635 DsrE/DsrF-like family DKE39_013340 PF01638 HxlR-like helix-turn-helix DKE39_013350 PF01967 MoaC family DKE39_013350 PF00994 Probable molybdopterin binding domain DKE39_013355 PF02391 MoaE protein DKE39_013365 PF04055 Radical SAM superfamily DKE39_013365 PF06463 Molybdenum Cofactor Synthesis C DKE39_013415 PF11799 impB/mucB/samB family C-terminal domain DKE39_013415 PF00817 impB/mucB/samB family DKE39_013415 PF13438 Domain of unknown function (DUF4113) DKE39_013420 PF01220 Dehydroquinase class II DKE39_013425 PF00364 Biotin-requiring enzyme DKE39_013430 PF02785 Biotin carboxylase C-terminal domain DKE39_013430 PF00289 Biotin carboxylase, N-terminal domain DKE39_013430 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain DKE39_013855 PF02590 Predicted SPOUT methyltransferase DKE39_013860 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase DKE39_013880 PF00633 Helix-hairpin-helix motif DKE39_013880 PF10576 Iron-sulfur binding domain of endonuclease III DKE39_013880 PF00730 HhH-GPD superfamily base excision DNA repair protein DKE39_013885 PF05191 Adenylate kinase, active site lid DKE39_013920 PF01730 UreF DKE39_013925 PF05194 UreE urease accessory protein, C-terminal domain DKE39_013925 PF02814 UreE urease accessory protein, N-terminal domain DKE39_013935 PF00699 Urease beta subunit DKE39_013940 PF00547 Urease, gamma subunit DKE39_013960 PF00463 Isocitrate lyase family DKE39_013995 PF00009 Elongation factor Tu GTP binding domain DKE39_014000 PF01507 Phosphoadenosine phosphosulfate reductase family DKE39_014030 PF00301 Rubredoxin DKE39_014040 PF00561 alpha/beta hydrolase fold DKE39_014045 PF03466 LysR substrate binding domain DKE39_014045 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DKE39_014060 PF00912 Transglycosylase DKE39_014065 PF01694 Rhomboid family DKE39_014100 PF00593 TonB dependent receptor DKE39_014100 PF07715 TonB-dependent Receptor Plug Domain DKE39_014105 PF01106 NifU-like domain DKE39_014105 PF01521 Iron-sulphur cluster biosynthesis DKE39_014120 PF03781 Sulfatase-modifying factor enzyme 1 DKE39_014150 PF02780 Transketolase, C-terminal domain DKE39_014150 PF02779 Transketolase, pyrimidine binding domain DKE39_014155 PF00456 Transketolase, thiamine diphosphate binding domain DKE39_014160 PF07690 Major Facilitator Superfamily DKE39_014170 PF03466 LysR substrate binding domain DKE39_014170 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DKE39_014185 PF01263 Aldose 1-epimerase DKE39_014190 PF07690 Major Facilitator Superfamily DKE39_014195 PF12833 Helix-turn-helix domain DKE39_014195 PF02311 AraC-like ligand binding domain DKE39_014205 PF01327 Polypeptide deformylase DKE39_014240 PF12697 Alpha/beta hydrolase family DKE39_014250 PF07690 Major Facilitator Superfamily DKE39_014255 PF07992 Pyridine nucleotide-disulphide oxidoreductase DKE39_014255 PF14759 Reductase C-terminal DKE39_014260 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily DKE39_014320 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase DKE39_014325 PF07152 YaeQ protein DKE39_014335 PF07683 Cobalamin synthesis protein cobW C-terminal domain DKE39_014335 PF02492 CobW/HypB/UreG, nucleotide-binding domain DKE39_014345 PF03061 Thioesterase superfamily DKE39_014355 PF02028 BCCT, betaine/carnitine/choline family transporter DKE39_014360 PF02028 BCCT, betaine/carnitine/choline family transporter DKE39_014395 PF13520 Amino acid permease DKE39_014420 PF01126 Heme oxygenase DKE39_014440 PF00593 TonB dependent receptor DKE39_014440 PF07715 TonB-dependent Receptor Plug Domain DKE39_014450 PF04542 Sigma-70 region 2 DKE39_014450 PF08281 Sigma-70, region 4 DKE39_014520 PF07690 Major Facilitator Superfamily DKE39_014525 PF13533 Biotin-lipoyl like DKE39_014580 PF00437 Type II/IV secretion system protein DKE39_014590 PF01475 Ferric uptake regulator family DKE39_014595 PF04355 SmpA / OmlA family DKE39_014615 PF01814 Hemerythrin HHE cation binding domain DKE39_014640 PF00692 dUTPase DKE39_014645 PF13361 UvrD-like helicase C-terminal domain DKE39_014645 PF00580 UvrD/REP helicase N-terminal domain DKE39_014650 PF00691 OmpA family DKE39_014650 PF13488 Glycine zipper DKE39_014670 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain DKE39_014675 PF03776 Septum formation topological specificity factor MinE DKE39_014700 PF07992 Pyridine nucleotide-disulphide oxidoreductase DKE39_014705 PF03588 Leucyl/phenylalanyl-tRNA protein transferase DKE39_014730 PF00009 Elongation factor Tu GTP binding domain DKE39_014730 PF03143 Elongation factor Tu C-terminal domain DKE39_014730 PF03144 Elongation factor Tu domain 2 DKE39_014745 PF00164 Ribosomal protein S12/S23 DKE39_014755 PF02801 Beta-ketoacyl synthase, C-terminal domain DKE39_014755 PF00109 Beta-ketoacyl synthase, N-terminal domain DKE39_014765 PF02678 Pirin DKE39_014765 PF05726 Pirin C-terminal cupin domain DKE39_014805 PF07859 alpha/beta hydrolase fold DKE39_014810 PF02028 BCCT, betaine/carnitine/choline family transporter DKE39_014840 PF00037 4Fe-4S binding domain DKE39_014850 PF01668 SmpB protein DKE39_014855 PF03358 NADPH-dependent FMN reductase DKE39_014920 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase DKE39_014920 PF14572 Phosphoribosyl synthetase-associated domain DKE39_014925 PF01386 Ribosomal L25p family DKE39_014930 PF01195 Peptidyl-tRNA hydrolase DKE39_014935 PF02261 Aspartate decarboxylase DKE39_014965 PF04972 BON domain DKE39_014965 PF01476 LysM domain DKE39_014970 PF00550 Phosphopantetheine attachment site DKE39_014985 PF01783 Ribosomal L32p protein family DKE39_014995 PF04315 Elongation factor P hydroxylase DKE39_015000 PF01300 Telomere recombination DKE39_015005 PF02616 Segregation and condensation protein ScpA DKE39_015010 PF04079 Segregation and condensation complex subunit ScpB DKE39_015015 PF00849 RNA pseudouridylate synthase DKE39_015015 PF01479 S4 domain DKE39_015030 PF00155 Aminotransferase class I and II DKE39_015035 PF00202 Aminotransferase class-III DKE39_015035 PF06968 Biotin and Thiamin Synthesis associated domain DKE39_015035 PF04055 Radical SAM superfamily DKE39_015050 PF00982 Glycosyltransferase family 20 DKE39_015055 PF07690 Major Facilitator Superfamily DKE39_015060 PF00210 Ferritin-like domain DKE39_015095 PF03309 Type III pantothenate kinase DKE39_015110 PF01207 Dihydrouridine synthase (Dus) DKE39_015165 PF01048 Phosphorylase superfamily DKE39_015175 PF10609 NUBPL iron-transfer P-loop NTPase DKE39_015250 PF03466 LysR substrate binding domain DKE39_015250 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DKE39_015255 PF00313 'Cold-shock' DNA-binding domain DKE39_015265 PF00361 Proton-conducting membrane transporter DKE39_015275 PF00361 Proton-conducting membrane transporter DKE39_015275 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus DKE39_015280 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L DKE39_015285 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 DKE39_015295 PF00146 NADH dehydrogenase DKE39_015315 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit DKE39_015315 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit DKE39_015320 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit DKE39_015345 PF00072 Response regulator receiver domain DKE39_015345 PF00486 Transcriptional regulatory protein, C terminal DKE39_015365 PF00268 Ribonucleotide reductase, small chain DKE39_015495 PF01613 Flavin reductase like domain DKE39_015510 PF03466 LysR substrate binding domain DKE39_015510 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DKE39_015515 PF01810 LysE type translocator DKE39_015525 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term DKE39_015525 PF12833 Helix-turn-helix domain DKE39_015565 PF00890 FAD binding domain DKE39_015565 PF14537 Cytochrome c3 DKE39_015575 PF02515 CoA-transferase family III DKE39_015580 PF07690 Major Facilitator Superfamily DKE39_015595 PF08240 Alcohol dehydrogenase GroES-like domain DKE39_015595 PF00107 Zinc-binding dehydrogenase DKE39_015600 PF00962 Adenosine/AMP deaminase DKE39_015635 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain DKE39_015635 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain DKE39_015640 PF00893 Small Multidrug Resistance protein DKE39_015670 PF00834 Ribulose-phosphate 3 epimerase family DKE39_015690 PF00814 Glycoprotease family DKE39_015695 PF00132 Bacterial transferase hexapeptide (six repeats) DKE39_015700 PF00293 NUDIX domain DKE39_015750 PF00815 Histidinol dehydrogenase DKE39_015755 PF01634 ATP phosphoribosyltransferase DKE39_015765 PF01722 BolA-like protein DKE39_015775 PF04552 Sigma-54, DNA binding domain DKE39_015775 PF00309 Sigma-54 factor, Activator interacting domain (AID) DKE39_015775 PF04963 Sigma-54 factor, core binding domain DKE39_015820 PF00795 Carbon-nitrogen hydrolase DKE39_015835 PF02566 OsmC-like protein DKE39_015840 PF00437 Type II/IV secretion system protein DKE39_015865 PF02325 YGGT family DKE39_015880 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit DKE39_015890 PF00085 Thioredoxin DKE39_015910 PF00216 Bacterial DNA-binding protein DKE39_015940 PF00453 Ribosomal protein L20 DKE39_015945 PF01632 Ribosomal protein L35 DKE39_015950 PF07690 Major Facilitator Superfamily DKE39_015960 PF00043 Glutathione S-transferase, C-terminal domain DKE39_015960 PF02798 Glutathione S-transferase, N-terminal domain DKE39_015985 PF04751 Protein of unknown function (DUF615) DKE39_015990 PF00381 PTS HPr component phosphorylation site DKE39_016000 PF02569 Pantoate-beta-alanine ligase DKE39_016005 PF02548 Ketopantoate hydroxymethyltransferase DKE39_016010 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) DKE39_016025 PF03819 MazG nucleotide pyrophosphohydrolase domain DKE39_016035 PF13291 ACT domain DKE39_016035 PF02824 TGS domain DKE39_016035 PF04607 Region found in RelA / SpoT proteins DKE39_016055 PF01627 Hpt domain DKE39_016055 PF00672 HAMP domain DKE39_016055 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DKE39_016055 PF00512 His Kinase A (phospho-acceptor) domain DKE39_016055 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) DKE39_016055 PF00072 Response regulator receiver domain DKE39_016070 PF01261 Xylose isomerase-like TIM barrel DKE39_016090 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch DKE39_016125 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DKE39_016125 PF03466 LysR substrate binding domain DKE39_016150 PF01026 TatD related DNase DKE39_016195 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain DKE39_016195 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain DKE39_016200 PF10369 Small subunit of acetolactate synthase DKE39_016215 PF00133 tRNA synthetases class I (I, L, M and V) DKE39_016215 PF13603 Leucyl-tRNA synthetase, Domain 2 DKE39_016215 PF09334 tRNA synthetases class I (M) DKE39_016215 PF08264 Anticodon-binding domain of tRNA DKE39_016240 PF12704 MacB-like periplasmic core domain DKE39_016240 PF00005 ABC transporter DKE39_016240 PF02687 FtsX-like permease family DKE39_016245 PF02321 Outer membrane efflux protein DKE39_016275 PF00462 Glutaredoxin DKE39_016280 PF02556 Preprotein translocase subunit SecB DKE39_016310 PF02801 Beta-ketoacyl synthase, C-terminal domain DKE39_016310 PF00109 Beta-ketoacyl synthase, N-terminal domain DKE39_016365 PF00550 Phosphopantetheine attachment site DKE39_016370 PF00550 Phosphopantetheine attachment site DKE39_016385 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal DKE39_016385 PF01926 50S ribosome-binding GTPase DKE39_016390 PF13360 PQQ-like domain DKE39_016405 PF04551 GcpE protein DKE39_016425 PF00334 Nucleoside diphosphate kinase DKE39_016430 PF04384 Iron-sulphur cluster assembly DKE39_016445 PF00595 PDZ domain DKE39_016445 PF11818 C-terminal domain of tail specific protease (DUF3340) DKE39_016445 PF17804 Tail specific protease N-terminal domain DKE39_016445 PF03572 Peptidase family S41 DKE39_016450 PF00933 Glycosyl hydrolase family 3 N terminal domain DKE39_016460 PF00561 alpha/beta hydrolase fold DKE39_016465 PF00171 Aldehyde dehydrogenase family DKE39_016485 PF01081 KDPG and KHG aldolase DKE39_016495 PF00871 Acetokinase family DKE39_016505 PF05681 Fumarate hydratase (Fumerase) DKE39_016505 PF05683 Fumarase C-terminus DKE39_016525 PF00574 Clp protease DKE39_016540 PF13640 2OG-Fe(II) oxygenase superfamily DKE39_016540 PF18331 PKHD-type hydroxylase C-terminal domain DKE39_016575 PF02416 mttA/Hcf106 family DKE39_016580 PF02416 mttA/Hcf106 family DKE39_016625 PF00186 Dihydrofolate reductase DKE39_016635 PF01625 Peptide methionine sulfoxide reductase DKE39_016645 PF01618 MotA/TolQ/ExbB proton channel family DKE39_016670 PF00830 Ribosomal L28 family DKE39_016700 PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) DKE39_016730 PF01638 HxlR-like helix-turn-helix DKE39_016735 PF00107 Zinc-binding dehydrogenase DKE39_016735 PF08240 Alcohol dehydrogenase GroES-like domain DKE39_016750 PF01810 LysE type translocator DKE39_016755 PF03279 Bacterial lipid A biosynthesis acyltransferase DKE39_016805 PF01176 Translation initiation factor 1A / IF-1 DKE39_016820 PF00180 Isocitrate/isopropylmalate dehydrogenase DKE39_016830 PF00694 Aconitase C-terminal domain DKE39_016895 PF02798 Glutathione S-transferase, N-terminal domain DKE39_016900 PF13280 WYL domain DKE39_016900 PF08279 HTH domain DKE39_016905 PF13419 Haloacid dehalogenase-like hydrolase DKE39_016940 PF03466 LysR substrate binding domain DKE39_016940 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DKE39_016950 PF06969 HemN C-terminal domain DKE39_016950 PF04055 Radical SAM superfamily DKE39_016970 PF08028 Acyl-CoA dehydrogenase, C-terminal domain DKE39_016970 PF02771 Acyl-CoA dehydrogenase, N-terminal domain DKE39_016975 PF03109 ABC1 family DKE39_016980 PF01197 Ribosomal protein L31 DKE39_016995 PF02537 CrcB-like protein, Camphor Resistance (CrcB) DKE39_017015 PF03884 DNA gyrase inhibitor YacG DKE39_017020 PF00753 Metallo-beta-lactamase superfamily DKE39_017050 PF01206 Sulfurtransferase TusA DKE39_017055 PF03471 Transporter associated domain DKE39_017055 PF00571 CBS domain DKE39_017065 PF01588 Putative tRNA binding domain DKE39_017090 PF00999 Sodium/hydrogen exchanger family DKE39_017090 PF02254 TrkA-N domain DKE39_017095 PF01430 Hsp33 protein DKE39_017105 PF00226 DnaJ domain DKE39_017105 PF01556 DnaJ C terminal domain DKE39_017125 PF00312 Ribosomal protein S15 DKE39_017205 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L DKE39_017210 PF00361 Proton-conducting membrane transporter DKE39_017220 PF04066 Multiple resistance and pH regulation protein F (MrpF / PhaF) DKE39_017230 PF02033 Ribosome-binding factor A DKE39_017240 PF08529 NusA N-terminal domain DKE39_017240 PF00575 S1 RNA binding domain DKE39_017240 PF13184 NusA-like KH domain DKE39_017245 PF02576 RimP N-terminal domain DKE39_017245 PF17384 RimP C-terminal SH3 domain DKE39_017265 PF03840 Preprotein translocase SecG subunit DKE39_017275 PF00437 Type II/IV secretion system protein DKE39_017275 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain DKE39_017320 PF02622 Uncharacterized ACR, COG1678 DKE39_017325 PF03652 Holliday junction resolvase DKE39_017355 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain DKE39_017355 PF12833 Helix-turn-helix domain DKE39_017355 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain DKE39_017355 PF02805 Metal binding domain of Ada DKE39_017360 PF01066 CDP-alcohol phosphatidyltransferase DKE39_017400 PF02803 Thiolase, C-terminal domain DKE39_017400 PF00108 Thiolase, N-terminal domain DKE39_017445 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DKE39_017445 PF00183 Hsp90 protein DKE39_017460 PF03553 Na+/H+ antiporter family DKE39_017460 PF13726 Na+-H+ antiporter family DKE39_017465 PF00561 alpha/beta hydrolase fold DKE39_017495 PF00542 Ribosomal protein L7/L12 C-terminal domain DKE39_017495 PF16320 Ribosomal protein L7/L12 dimerisation domain DKE39_017500 PF00466 Ribosomal protein L10 DKE39_017505 PF00687 Ribosomal protein L1p/L10e family DKE39_017510 PF03946 Ribosomal protein L11, N-terminal domain DKE39_017510 PF00298 Ribosomal protein L11, RNA binding domain DKE39_017515 PF00467 KOW motif DKE39_017515 PF02357 Transcription termination factor nusG DKE39_017520 PF00584 SecE/Sec61-gamma subunits of protein translocation complex DKE39_017530 PF03143 Elongation factor Tu C-terminal domain DKE39_017530 PF03144 Elongation factor Tu domain 2 DKE39_017530 PF00009 Elongation factor Tu GTP binding domain DKE39_017560 PF13419 Haloacid dehalogenase-like hydrolase DKE39_017565 PF12401 Protein of unknown function (DUF2662) DKE39_017565 PF00498 FHA domain DKE39_017610 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain DKE39_017610 PF03900 Porphobilinogen deaminase, C-terminal domain DKE39_017615 PF04397 LytTr DNA-binding domain DKE39_017615 PF00072 Response regulator receiver domain DKE39_017630 PF04362 Bacterial Fe(2+) trafficking DKE39_017635 PF01895 PhoU domain DKE39_017645 PF00892 EamA-like transporter family DKE39_017665 PF00293 NUDIX domain DKE39_017675 PF01258 Prokaryotic dksA/traR C4-type zinc finger DKE39_017685 PF01098 Cell cycle protein DKE39_017710 PF02899 Phage integrase, N-terminal SAM-like domain DKE39_017710 PF00589 Phage integrase family DKE39_017720 PF01842 ACT domain DKE39_017720 PF00742 Homoserine dehydrogenase DKE39_017720 PF03447 Homoserine dehydrogenase, NAD binding domain DKE39_017730 PF00768 D-alanyl-D-alanine carboxypeptidase DKE39_017735 PF00072 Response regulator receiver domain DKE39_017735 PF00196 Bacterial regulatory proteins, luxR family DKE39_017755 PF01676 Metalloenzyme superfamily DKE39_017755 PF06415 BPG-independent PGAM N-terminus (iPGM_N) DKE39_017760 PF03739 Lipopolysaccharide export system permease LptF/LptG DKE39_017790 PF00677 Lumazine binding domain DKE39_017805 PF03477 ATP cone domain DKE39_017810 PF00909 Ammonium Transporter Family DKE39_017835 PF01636 Phosphotransferase enzyme family DKE39_017840 PF04655 Aminoglycoside/hydroxyurea antibiotic resistance kinase DKE39_017865 PF02909 Tetracyclin repressor-like, C-terminal domain DKE39_017865 PF00440 Bacterial regulatory proteins, tetR family DKE39_017870 PF07690 Major Facilitator Superfamily DKE39_017880 PF01740 STAS domain DKE39_017880 PF00916 Sulfate permease family DKE39_017915 PF00665 Integrase core domain DKE39_017980 PF02899 Phage integrase, N-terminal SAM-like domain DKE39_017980 PF00589 Phage integrase family DKE39_018010 PF01740 STAS domain DKE39_018010 PF00916 Sulfate permease family DKE39_018015 PF00582 Universal stress protein family DKE39_018045 PF13335 Magnesium chelatase, subunit ChlI C-terminal DKE39_018045 PF01078 Magnesium chelatase, subunit ChlI DKE39_018050 PF00155 Aminotransferase class I and II DKE39_018050 PF00392 Bacterial regulatory proteins, gntR family DKE39_018075 PF00719 Inorganic pyrophosphatase DKE39_018100 PF07690 Major Facilitator Superfamily DKE39_018105 PF03458 UPF0126 domain DKE39_018110 PF02810 SEC-C motif DKE39_018115 PF03741 Integral membrane protein TerC family DKE39_018115 PF03471 Transporter associated domain DKE39_018180 PF00291 Pyridoxal-phosphate dependent enzyme DKE39_018215 PF00440 Bacterial regulatory proteins, tetR family DKE39_018250 PF17782 DprA winged helix domain DKE39_018250 PF02481 DNA recombination-mediator protein A DKE39_018265 PF00440 Bacterial regulatory proteins, tetR family DKE39_018270 PF07690 Major Facilitator Superfamily DKE39_018280 PF00255 Glutathione peroxidase DKE39_018290 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain DKE39_018300 PF00231 ATP synthase DKE39_018305 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain DKE39_018305 PF02874 ATP synthase alpha/beta family, beta-barrel domain DKE39_018305 PF00306 ATP synthase alpha/beta chain, C terminal domain DKE39_018320 PF00137 ATP synthase subunit C DKE39_018325 PF00119 ATP synthase A chain DKE39_018365 PF00390 Malic enzyme, N-terminal domain DKE39_018365 PF03949 Malic enzyme, NAD binding domain DKE39_018390 PF02678 Pirin DKE39_018390 PF05726 Pirin C-terminal cupin domain DKE39_018415 PF12724 Flavodoxin domain DKE39_018430 PF07681 DoxX DKE39_018435 PF09335 SNARE associated Golgi protein DKE39_018460 PF01722 BolA-like protein DKE39_018475 PF01648 4'-phosphopantetheinyl transferase superfamily DKE39_018485 PF00196 Bacterial regulatory proteins, luxR family DKE39_018485 PF03472 Autoinducer binding domain DKE39_018510 PF13193 AMP-binding enzyme C-terminal domain DKE39_018510 PF00501 AMP-binding enzyme DKE39_018515 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase DKE39_018515 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase DKE39_018520 PF00171 Aldehyde dehydrogenase family DKE39_018530 PF00324 Amino acid permease DKE39_018540 PF01042 Endoribonuclease L-PSP DKE39_018550 PF01266 FAD dependent oxidoreductase DKE39_018555 PF01037 Lrp/AsnC ligand binding domain DKE39_018580 PF00849 RNA pseudouridylate synthase DKE39_018630 PF00285 Citrate synthase, C-terminal domain DKE39_018650 PF00155 Aminotransferase class I and II DKE39_018660 PF01070 FMN-dependent dehydrogenase DKE39_018665 PF00392 Bacterial regulatory proteins, gntR family DKE39_018665 PF07729 FCD domain DKE39_018675 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I DKE39_018675 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II DKE39_018675 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III DKE39_018675 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain DKE39_018695 PF16363 GDP-mannose 4,6 dehydratase DKE39_018710 PF00483 Nucleotidyl transferase DKE39_018715 PF02719 Polysaccharide biosynthesis protein DKE39_018760 PF04230 Polysaccharide pyruvyl transferase DKE39_018775 PF10531 SLBB domain DKE39_018775 PF18412 Outer-membrane lipoprotein Wza C-terminal domain DKE39_018775 PF02563 Polysaccharide biosynthesis/export protein DKE39_018780 PF01451 Low molecular weight phosphotyrosine protein phosphatase DKE39_018830 PF00487 Fatty acid desaturase DKE39_018840 PF00440 Bacterial regulatory proteins, tetR family DKE39_018845 PF08360 QacR-like protein, C-terminal region DKE39_018845 PF00440 Bacterial regulatory proteins, tetR family DKE39_018860 PF13419 Haloacid dehalogenase-like hydrolase DKE39_018865 PF00106 short chain dehydrogenase DKE39_018895 PF00296 Luciferase-like monooxygenase DKE39_018900 PF00528 Binding-protein-dependent transport system inner membrane component DKE39_018905 PF00005 ABC transporter DKE39_018935 PF01252 Signal peptidase (SPase) II DKE39_018940 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase DKE39_018980 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD DKE39_019015 PF01025 GrpE DKE39_019040 PF13406 Transglycosylase SLT domain DKE39_019060 PF08245 Mur ligase middle domain DKE39_019060 PF02875 Mur ligase family, glutamate ligase domain DKE39_019060 PF01225 Mur ligase family, catalytic domain DKE39_019070 PF01569 PAP2 superfamily DKE39_019085 PF03738 Glutathionylspermidine synthase preATP-grasp DKE39_019090 PF00355 Rieske [2Fe-2S] domain DKE39_019100 PF00156 Phosphoribosyl transferase domain DKE39_019110 PF10411 Disulfide bond isomerase protein N-terminus DKE39_019110 PF13098 Thioredoxin-like domain DKE39_019135 PF01809 Putative membrane protein insertion efficiency factor DKE39_019145 PF00468 Ribosomal protein L34 DKE39_019160 PF01807 CHC2 zinc finger DKE39_019160 PF08275 DNA primase catalytic core, N-terminal domain DKE39_019160 PF10410 DnaB-helicase binding domain of primase DKE39_019340 PF00005 ABC transporter DKE39_019340 PF09383 NIL domain DKE39_019375 PF02216 B domain DKE39_019375 PF00746 LPXTG cell wall anchor motif DKE39_019375 PF01476 LysM domain DKE39_019375 PF03373 Octapeptide repeat DKE39_019375 PF04650 YSIRK type signal peptide DKE39_019475 PF00756 Putative esterase DKE39_019560 PF00929 Exonuclease DKE39_019680 PF07733 Bacterial DNA polymerase III alpha NTPase domain DKE39_019680 PF17657 Bacterial DNA polymerase III alpha subunit finger domain DKE39_019680 PF14579 Helix-hairpin-helix motif DKE39_019680 PF02811 PHP domain DKE39_020295 PF00905 Penicillin binding protein transpeptidase domain