locus-tag	class	description
DKE39_000065	COG2377	Catalyzes the specific phosphorylation of 1,6-anhydro-N- acetylmuramic acid (anhMurNAc) with the simultaneous cleavage of the 1,6-anhydro ring, generating MurNAc-6-P. Is required for the utilization of anhMurNAc either imported from the medium or derived from its own cell wall murein, and thus plays a role in cell wall recycling
DKE39_000155	COG2233	PERMEase
DKE39_000210	COG0656	L-ascorbic acid biosynthetic process
DKE39_000235	COG1064	alcohol dehydrogenase
DKE39_000240	COG2818	Glycosylase
DKE39_000275	COG2983	Belongs to the UPF0260 family
DKE39_000305	COG3188	usher protein
DKE39_000310	COG3188	usher protein
DKE39_000350	COG0329	Catalyzes the condensation of (S)-aspartate-beta- semialdehyde (S)-ASA and pyruvate to 4-hydroxy- tetrahydrodipicolinate (HTPA)
DKE39_000355	COG1335	isochorismatase
DKE39_000370	COG0534	Mate efflux family protein
DKE39_000375	COG1683	Conserved Protein
DKE39_000415	COG0523	cobalamin synthesis protein
DKE39_000430	COG2188	Transcriptional regulator
DKE39_000460	COG0010	Belongs to the arginase family
DKE39_000475	COG0796	Provides the (R)-glutamate required for cell wall biosynthesis
DKE39_000490	COG0449	glutamine-fructose-6-phosphate transaminase (isomerizing) activity
DKE39_000500	COG1267	Lipid phosphatase which dephosphorylates phosphatidylglycerophosphate (PGP) to phosphatidylglycerol (PG)
DKE39_000505	COG0611	Catalyzes the ATP-dependent phosphorylation of thiamine- monophosphate (TMP) to form thiamine-pyrophosphate (TPP), the active form of vitamin B1
DKE39_000605	COG2733	membrane
DKE39_000620	COG2918	glutathione biosynthetic process
DKE39_000645	COG3150	esterase
DKE39_000675	COG2233	PERMEase
DKE39_000715	COG3706	GGDEF domain
DKE39_000735	COG0708	Exodeoxyribonuclease III
DKE39_000795	COG1589	Essential cell division protein. May link together the upstream cell division proteins, which are predominantly cytoplasmic, with the downstream cell division proteins, which are predominantly periplasmic. May control correct divisome assembly
DKE39_000805	COG0206	Essential cell division protein that forms a contractile ring structure (Z ring) at the future cell division site. The regulation of the ring assembly controls the timing and the location of cell division. One of the functions of the FtsZ ring is to recruit other cell division proteins to the septum to produce a new cell wall between the dividing cells. Binds GTP and shows GTPase activity
DKE39_000820	COG4942	peptidase
DKE39_000830	COG0508	dehydrogenase complex catalyzes the overall conversion of
DKE39_000840	COG2119	membrane
DKE39_000850	COG0426	domain, Protein
DKE39_000850	COG1853	conserved protein domain typically associated with flavoprotein oxygenases, DIM6 NTAB family
DKE39_000895	COG1902	pentaerythritol trinitrate reductase activity
DKE39_000910	COG0668	transmembrane transport
DKE39_000925	COG1335	isochorismatase
DKE39_000930	COG1522	sequence-specific DNA binding
DKE39_000995	COG1309	transcriptional regulator
DKE39_001015	COG0351	phosphomethylpyrimidine kinase
DKE39_001015	COG0352	thiamine-phosphate diphosphorylase activity
DKE39_001015	COG0819	Catalyzes an amino-pyrimidine hydrolysis reaction at the C5' of the pyrimidine moiety of thiamine compounds, a reaction that is part of a thiamine salvage pathway
DKE39_001095	COG0160	Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family
DKE39_001110	COG1335	isochorismatase
DKE39_001140	COG2814	Major facilitator Superfamily
DKE39_001145	COG0583	DNA-binding transcription factor activity
DKE39_001195	COG1733	regulation of RNA biosynthetic process
DKE39_001205	COG2249	NAD(P)H dehydrogenase (quinone) activity
DKE39_001220	COG3155	Displays glyoxalase activity, catalyzing the conversion of glyoxal to glycolate
DKE39_001300	COG2329	Antibiotic biosynthesis monooxygenase
DKE39_001335	COG0118	IGPS catalyzes the conversion of PRFAR and glutamine to IGP, AICAR and glutamate. The HisH subunit provides the glutamine amidotransferase activity that produces the ammonia necessary to HisF for the synthesis of IGP and AICAR
DKE39_001395	COG4221	oxidoreductase activity
DKE39_001595	COG0493	'glutamate synthase
DKE39_001605	COG1704	LemA family
DKE39_001610	COG1512	COG1512 Beta-propeller domains of methanol dehydrogenase type
DKE39_001620	COG4969	Belongs to the N-Me-Phe pilin family
DKE39_001660	COG0194	GDP metabolic process
DKE39_001720	COG0806	An accessory protein needed during the final step in the assembly of 30S ribosomal subunit, possibly for assembly of the head region. Probably interacts with S19. Essential for efficient processing of 16S rRNA. May be needed both before and after RbfA during the maturation of 16S rRNA. It has affinity for free ribosomal 30S subunits but not for 70S ribosomes
DKE39_001770	COG0111	D-isomer specific 2-hydroxyacid dehydrogenase
DKE39_001785	COG1359	(4S)-4-hydroxy-5-phosphonooxypentane-2,3-dione isomerase activity
DKE39_001820	COG1192	Involved in chromosome partitioning
DKE39_001850	COG0833	amino acid
DKE39_001910	COG0583	DNA-binding transcription factor activity
DKE39_002015	COG0513	Belongs to the DEAD box helicase family
DKE39_002020	COG1127	ABC transporter
DKE39_002025	COG0767	ABC-type transport system involved in resistance to organic solvents, permease component
DKE39_002035	COG2854	intermembrane phospholipid transfer
DKE39_002055	COG0494	nUDIX hydrolase
DKE39_002060	COG1040	competence protein
DKE39_002085	COG1946	Acyl-CoA thioesterase
DKE39_002090	COG1301	dicarboxylic acid transport
DKE39_002105	COG1959	2 iron, 2 sulfur cluster binding
DKE39_002110	COG1018	Is involved in NO detoxification in an aerobic process, termed nitric oxide dioxygenase (NOD) reaction that utilizes O(2) and NAD(P)H to convert NO to nitrate, which protects the bacterium from various noxious nitrogen compounds. Therefore, plays a central role in the inducible response to nitrosative stress
DKE39_002110	COG1017	nitric oxide dioxygenase activity
DKE39_002120	COG0626	cystathionine gamma-synthase activity
DKE39_002240	COG0257	Belongs to the bacterial ribosomal protein bL36 family
DKE39_002250	COG0100	Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine-Dalgarno cleft in the 70S ribosome
DKE39_002275	COG1960	acyl-CoA dehydrogenase activity
DKE39_002280	COG2938	An FAD assembly protein, which accelerates covalent attachment of the cofactor into other proteins. Plays an essential role in the assembly of succinate dehydrogenase (SDH, respiratory complex II), an enzyme complex that is a component of both the tricarboxylic acid cycle and the electron transport chain, and which couples the oxidation of succinate to fumarate with the reduction of ubiquinone (coenzyme Q) to ubiquinol. Required for flavinylation (covalent attachment of FAD) of the flavoprotein subunit SdhA of SDH
DKE39_002310	COG3529	nucleic-acid-binding protein containing a Zn-ribbon domain
DKE39_002365	COG0179	Fumarylacetoacetate (FAA) hydrolase
DKE39_002370	COG2169	Transcriptional regulator
DKE39_002425	COG1196	nuclear chromosome segregation
DKE39_002425	COG0741	lytic transglycosylase activity
DKE39_002425	COG0739	heme binding
DKE39_002455	COG2961	Specifically methylates the adenine in position 2030 of 23S rRNA
DKE39_002460	COG1183	phosphatidylcholine synthase activity
DKE39_002510	COG1960	acyl-CoA dehydrogenase activity
DKE39_002515	COG1309	transcriptional regulator
DKE39_002535	COG1960	acyl-CoA dehydrogenase activity
DKE39_002555	COG2969	positive regulation of protein catabolic process
DKE39_002565	COG0103	maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
DKE39_002580	COG0030	16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase activity
DKE39_002615	COG1502	Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol
DKE39_002620	COG1408	metallophosphoesterase
DKE39_002630	COG2199	diguanylate cyclase activity
DKE39_002675	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
DKE39_002675	COG3453	Protein conserved in bacteria
DKE39_002690	COG1607	acyl-coa hydrolase
DKE39_002760	COG1862	Preprotein translocase
DKE39_002795	COG2205	protein histidine kinase activity
DKE39_002830	COG0438	transferase activity, transferring glycosyl groups
DKE39_002890	COG3223	Belongs to the PsiE family
DKE39_002925	COG0745	RESPONSE REGULATOR receiver
DKE39_002950	COG2096	Adenosyltransferase
DKE39_002965	COG0133	tryptophan synthase activity
DKE39_003035	COG0477	Major facilitator Superfamily
DKE39_003075	COG2207	Transcriptional regulator
DKE39_003125	COG3637	Has lipid A 3-O-deacylase activity. Hydrolyzes the ester bond at the 3 position of lipid A, a bioactive component of lipopolysaccharide (LPS), thereby releasing the primary fatty acyl moiety
DKE39_003125	COG2885	chlorophyll binding
DKE39_003135	COG0833	amino acid
DKE39_003175	COG2094	Belongs to the DNA glycosylase MPG family
DKE39_003180	COG4772	TonB-dependent receptor
DKE39_003195	COG1902	pentaerythritol trinitrate reductase activity
DKE39_003230	COG3189	MarR family transcriptional regulator
DKE39_003235	COG2824	Alkylphosphonate utilization operon protein PhnA
DKE39_003310	COG2832	Protein of unknown function (DUF454)
DKE39_003315	COG1376	ErfK ybiS ycfS ynhG family protein
DKE39_003365	COG1289	transmembrane transporter activity
DKE39_003400	COG1171	Catalyzes the anaerobic formation of alpha-ketobutyrate and ammonia from threonine in a two-step reaction. The first step involved a dehydration of threonine and a production of enamine intermediates (aminocrotonate), which tautomerizes to its imine form (iminobutyrate). Both intermediates are unstable and short- lived. The second step is the nonenzymatic hydrolysis of the enamine imine intermediates to form 2-ketobutyrate and free ammonia. In the low water environment of the cell, the second step is accelerated by RidA
DKE39_003435	COG0064	Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp- tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA(Gln)
DKE39_003445	COG0721	Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp- tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA(Gln)
DKE39_003455	COG1792	Involved in formation and maintenance of cell shape
DKE39_003460	COG2891	Involved in formation of the rod shape of the cell. May also contribute to regulation of formation of penicillin-binding proteins
DKE39_003465	COG0424	maF-like protein
DKE39_003480	COG1020	D-alanine [D-alanyl carrier protein] ligase activity
DKE39_003535	COG2207	Transcriptional regulator
DKE39_003565	COG0142	geranyltranstransferase activity
DKE39_003570	COG2315	Protein conserved in bacteria
DKE39_003610	COG0745	RESPONSE REGULATOR receiver
DKE39_003615	COG0642	Histidine kinase
DKE39_003665	COG1028	Short-chain dehydrogenase reductase Sdr
DKE39_003680	COG0393	Putative heavy-metal-binding
DKE39_003685	COG1538	Outer membrane efflux protein
DKE39_003695	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
DKE39_003700	COG0671	phosphoesterase, PA-phosphatase related
DKE39_003750	COG0219	Methylates the ribose at the nucleotide 34 wobble position in the two leucyl isoacceptors tRNA(Leu)(CmAA) and tRNA(Leu)(cmnm5UmAA). Catalyzes the methyl transfer from S- adenosyl-L-methionine to the 2'-OH of the wobble nucleotide
DKE39_003780	COG0321	lipoyl(octanoyl) transferase activity
DKE39_003785	COG2921	Belongs to the UPF0250 family
DKE39_003830	COG2142	Succinate dehydrogenase hydrophobic membrane anchor
DKE39_003835	COG1053	succinate dehydrogenase
DKE39_003885	COG2354	Protein conserved in bacteria
DKE39_003950	COG0589	response to stress
DKE39_003970	COG0505	Belongs to the CarA family
DKE39_003995	COG0465	Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins
DKE39_004050	COG0477	Major facilitator Superfamily
DKE39_004105	COG0584	glycerophosphoryl diester phosphodiesterase
DKE39_004150	COG0782	Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus
DKE39_004225	COG1526	Required for formate dehydrogenase (FDH) activity. Acts as a sulfur carrier protein that transfers sulfur from IscS to the molybdenum cofactor prior to its insertion into FDH
DKE39_004230	COG3339	Conserved Protein
DKE39_004240	COG2269	With EpmB is involved in the beta-lysylation step of the post-translational modification of translation elongation factor P (EF-P). Catalyzes the ATP-dependent activation of (R)-beta-lysine produced by EpmB, forming a lysyl-adenylate, from which the beta- lysyl moiety is then transferred to the epsilon-amino group of a conserved specific lysine residue in EF-P
DKE39_004255	COG1113	amino acid transport
DKE39_004275	COG1280	lysine exporter protein (LysE YggA)
DKE39_004330	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
DKE39_004365	COG1136	(ABC) transporter
DKE39_004380	COG3004	Na( ) H( ) antiporter that extrudes sodium in exchange for external protons
DKE39_004380	COG0616	signal peptide processing
DKE39_004385	COG0596	Alpha beta hydrolase
DKE39_004390	COG0299	Catalyzes the transfer of a formyl group from 10- formyltetrahydrofolate to 5-phospho-ribosyl-glycinamide (GAR), producing 5-phospho-ribosyl-N-formylglycinamide (FGAR) and tetrahydrofolate
DKE39_004500	COG0047	phosphoribosylformylglycinamidine synthase activity
DKE39_004500	COG0046	Part of the phosphoribosylformylglycinamidine synthase complex involved in the purines biosynthetic pathway. Catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to yield formylglycinamidine ribonucleotide (FGAM) and glutamate. The FGAM synthase complex is composed of three subunits. PurQ produces an ammonia molecule by converting glutamine to glutamate. PurL transfers the ammonia molecule to FGAR to form FGAM in an ATP-dependent manner. PurS interacts with PurQ and PurL and is thought to assist in the transfer of the ammonia molecule from PurQ to PurL
DKE39_004505	COG2814	Major facilitator Superfamily
DKE39_004510	COG0327	Belongs to the GTP cyclohydrolase I type 2 NIF3 family
DKE39_004520	COG1056	cytidyltransferase-related domain
DKE39_004520	COG1051	belongs to the nudix hydrolase family
DKE39_004530	COG1225	Alkyl hydroperoxide reductase Thiol specific antioxidant Mal allergen
DKE39_004545	COG0603	Catalyzes the ATP-dependent conversion of 7-carboxy-7- deazaguanine (CDG) to 7-cyano-7-deazaguanine (preQ(0))
DKE39_004560	COG4625	pathogenesis
DKE39_004565	COG0583	DNA-binding transcription factor activity
DKE39_004575	COG4208	sulfate ABC transporter
DKE39_004580	COG0555	PFAM binding-protein-dependent transport systems inner membrane component
DKE39_004620	COG0265	Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain
DKE39_004660	COG1381	Involved in DNA repair and RecF pathway recombination
DKE39_004665	COG0854	Catalyzes the complicated ring closure reaction between the two acyclic compounds 1-deoxy-D-xylulose-5-phosphate (DXP) and 3-amino-2-oxopropyl phosphate (1-amino-acetone-3-phosphate or AAP) to form pyridoxine 5'-phosphate (PNP) and inorganic phosphate
DKE39_004675	COG4221	oxidoreductase activity
DKE39_004725	COG0556	nucleotide-excision repair
DKE39_004780	COG2070	2-Nitropropane dioxygenase
DKE39_004810	COG1215	transferase activity, transferring glycosyl groups
DKE39_004840	COG1686	Belongs to the peptidase S11 family
DKE39_004885	COG0583	DNA-binding transcription factor activity
DKE39_004930	COG0352	thiamine-phosphate diphosphorylase activity
DKE39_004980	COG1309	transcriptional regulator
DKE39_004990	COG0160	Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family
DKE39_005015	COG1113	amino acid transport
DKE39_005020	COG0226	Part of the ABC transporter complex PstSACB involved in phosphate import
DKE39_005035	COG1117	ATPase-coupled phosphate ion transmembrane transporter activity
DKE39_005105	COG0583	DNA-binding transcription factor activity
DKE39_005220	COG0583	DNA-binding transcription factor activity
DKE39_005245	COG1251	Belongs to the nitrite and sulfite reductase 4Fe-4S domain family
DKE39_005290	COG4948	Mandelate Racemase Muconate Lactonizing
DKE39_005320	COG1741	Belongs to the pirin family
DKE39_005330	COG2964	Protein conserved in bacteria
DKE39_005355	COG4605	iron ion homeostasis
DKE39_005360	COG4604	ABC transporter, ATP-binding protein
DKE39_005415	COG3208	Thioesterase involved in non-ribosomal peptide biosynthesis
DKE39_005425	COG1169	isochorismate synthase
DKE39_005440	COG3739	integral membrane protein
DKE39_005510	COG0512	Glutamine amidotransferase of anthranilate synthase
DKE39_005535	COG0382	Catalyzes the prenylation of para-hydroxybenzoate (PHB) with an all-trans polyprenyl group. Mediates the second step in the final reaction sequence of ubiquinone-8 (UQ-8) biosynthesis, which is the condensation of the polyisoprenoid side chain with PHB, generating the first membrane-bound Q intermediate 3- octaprenyl-4-hydroxybenzoate
DKE39_005570	COG0605	Destroys radicals which are normally produced within the cells and which are toxic to biological systems
DKE39_005600	COG1385	rRNA (uridine-N3-)-methyltransferase activity
DKE39_005630	COG0320	Catalyzes the radical-mediated insertion of two sulfur atoms into the C-6 and C-8 positions of the octanoyl moiety bound to the lipoyl domains of lipoate-dependent enzymes, thereby converting the octanoylated domains into lipoylated derivatives
DKE39_005635	COG1249	Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family
DKE39_005655	COG0024	Methionine aminopeptidase
DKE39_005660	COG0052	Belongs to the universal ribosomal protein uS2 family
DKE39_005700	COG2951	lytic endotransglycosylase activity
DKE39_005705	COG0772	Belongs to the SEDS family
DKE39_005725	COG1131	(ABC) transporter
DKE39_005795	COG4160	amino acid transport
DKE39_005810	COG1145	4fe-4S ferredoxin, iron-sulfur binding domain protein
DKE39_005835	COG1720	tRNA m6t6A37 methyltransferase activity
DKE39_005880	COG0744	Peptidoglycan polymerase that catalyzes glycan chain elongation from lipid-linked precursors
DKE39_005890	COG3139	Protein of unknown function (DUF1315)
DKE39_005895	COG0547	Catalyzes the transfer of the phosphoribosyl group of 5- phosphorylribose-1-pyrophosphate (PRPP) to anthranilate to yield N-(5'-phosphoribosyl)-anthranilate (PRA)
DKE39_005905	COG1301	dicarboxylic acid transport
DKE39_005935	COG2195	Cleaves the N-terminal amino acid of tripeptides
DKE39_005970	COG2363	Small membrane protein
DKE39_005985	COG1278	Cold shock
DKE39_005990	COG0513	Belongs to the DEAD box helicase family
DKE39_006000	COG0778	Nitroreductase
DKE39_006060	COG1610	YqeY-like protein
DKE39_006065	COG0828	Belongs to the bacterial ribosomal protein bS21 family
DKE39_006175	COG3316	Transposase and inactivated derivatives
DKE39_006230	COG0482	sulfurtransferase activity
DKE39_006285	COG3316	Transposase and inactivated derivatives
DKE39_006300	COG1301	dicarboxylic acid transport
DKE39_006310	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
DKE39_006315	COG2011	ABC-type metal ion transport system permease component
DKE39_006335	COG0138	bifunctional purine biosynthesis protein purh
DKE39_006340	COG2901	Activates ribosomal RNA transcription. Plays a direct role in upstream activation of rRNA promoters
DKE39_006380	COG1305	Transglutaminase-like
DKE39_006420	COG3125	oxidoreductase activity, acting on diphenols and related substances as donors, oxygen as acceptor
DKE39_006430	COG0843	Cytochrome c oxidase is the component of the respiratory chain that catalyzes the reduction of oxygen to water. Subunits 1- 3 form the functional core of the enzyme complex. CO I is the catalytic subunit of the enzyme. Electrons originating in cytochrome c are transferred via the copper A center of subunit 2 and heme A of subunit 1 to the bimetallic center formed by heme A3 and copper B
DKE39_006470	COG3658	cytochrome
DKE39_006480	COG2141	COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases
DKE39_006520	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
DKE39_006525	COG0715	COG0715 ABC-type nitrate sulfonate bicarbonate transport systems periplasmic components
DKE39_006545	COG0365	Catalyzes the conversion of acetate into acetyl-CoA (AcCoA), an essential intermediate at the junction of anabolic and catabolic pathways. AcsA undergoes a two-step reaction. In the first half reaction, AcsA combines acetate with ATP to form acetyl-adenylate (AcAMP) intermediate. In the second half reaction, it can then transfer the acetyl group from AcAMP to the sulfhydryl group of CoA, forming the product AcCoA
DKE39_006550	COG1853	conserved protein domain typically associated with flavoprotein oxygenases, DIM6 NTAB family
DKE39_006580	COG2216	Part of the high-affinity ATP-driven potassium transport (or Kdp) system, which catalyzes the hydrolysis of ATP coupled with the electrogenic transport of potassium into the cytoplasm. This subunit is responsible for energy coupling to the transport system
DKE39_006730	COG1923	regulation of RNA biosynthetic process
DKE39_006735	COG0697	spore germination
DKE39_006765	COG0519	Catalyzes the synthesis of GMP from XMP
DKE39_006765	COG0518	GMP synthase (glutamine-hydrolyzing) activity
DKE39_006770	COG4302	ethanolamine ammonia-lyase activity
DKE39_006800	COG1454	alcohol dehydrogenase
DKE39_006835	COG0308	aminopeptidase N
DKE39_006855	COG1605	Chorismate mutase
DKE39_006885	COG0668	transmembrane transport
DKE39_006920	COG4773	Receptor
DKE39_006945	COG0589	response to stress
DKE39_006990	COG0583	DNA-binding transcription factor activity
DKE39_007030	COG2812	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity
DKE39_007040	COG0824	Thioesterase
DKE39_007045	COG1454	alcohol dehydrogenase
DKE39_007055	COG0394	Belongs to the low molecular weight phosphotyrosine protein phosphatase family
DKE39_007075	COG0069	glutamate synthase activity
DKE39_007275	COG5410	chromosome segregation
DKE39_007505	COG1974	Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair
DKE39_007785	COG1279	arginine transmembrane transporter activity
DKE39_007790	COG0583	DNA-binding transcription factor activity
DKE39_008040	COG1113	amino acid transport
DKE39_008045	COG3316	Transposase and inactivated derivatives
DKE39_008070	COG3316	Transposase and inactivated derivatives
DKE39_008085	COG3316	Transposase and inactivated derivatives
DKE39_008105	COG3316	Transposase and inactivated derivatives
DKE39_008120	COG1741	Belongs to the pirin family
DKE39_008145	COG2252	PERMEase
DKE39_008150	COG1816	Catalyzes the hydrolytic deamination of adenine to hypoxanthine. Plays an important role in the purine salvage pathway and in nitrogen catabolism
DKE39_008155	COG3038	cytochrome b561
DKE39_008195	COG0104	Plays an important role in the de novo pathway of purine nucleotide biosynthesis. Catalyzes the first committed step in the biosynthesis of AMP from IMP
DKE39_008225	COG1765	OsmC-like protein
DKE39_008275	COG2885	chlorophyll binding
DKE39_008285	COG0625	glutathione transferase activity
DKE39_008290	COG0220	tRNA (guanine-N7-)-methyltransferase activity
DKE39_008315	COG3634	alkyl hydroperoxide reductase activity
DKE39_008325	COG2518	Catalyzes the methyl esterification of L-isoaspartyl residues in peptides and proteins that result from spontaneous decomposition of normal L-aspartyl and L-asparaginyl residues. It plays a role in the repair and or degradation of damaged proteins
DKE39_008335	COG0450	alkyl hydroperoxide reductase
DKE39_008340	COG1643	Atp-dependent helicase
DKE39_008375	COG1028	Short-chain dehydrogenase reductase Sdr
DKE39_008390	COG4638	Rieske (2fe-2S)
DKE39_008395	COG0583	DNA-binding transcription factor activity
DKE39_008450	COG1570	exodeoxyribonuclease VII activity
DKE39_008530	COG2814	Major facilitator Superfamily
DKE39_008535	COG1733	regulation of RNA biosynthetic process
DKE39_008575	COG0794	Belongs to the SIS family. GutQ KpsF subfamily
DKE39_008575	COG0517	IMP dehydrogenase activity
DKE39_008580	COG1778	Involved in the biosynthesis of lipopolysaccharides (LPSs). Catalyzes the hydrolysis of 3-deoxy-D-manno-octulosonate 8-phosphate (KDO 8-P) to 3-deoxy-D-manno-octulosonate (KDO) and inorganic phosphate
DKE39_008590	COG1934	Involved in the assembly of lipopolysaccharide (LPS). Required for the translocation of LPS from the inner membrane to the outer membrane. May form a bridge between the inner membrane and the outer membrane, via interactions with LptC and LptD, thereby facilitating LPS transfer across the periplasm
DKE39_008595	COG1137	ATPase activity
DKE39_008640	COG1146	Ferredoxins are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions
DKE39_008655	COG1522	sequence-specific DNA binding
DKE39_008660	COG5006	permease, DMT superfamily
DKE39_008675	COG1560	Kdo2-lipid A biosynthetic process
DKE39_008775	COG1914	H( )-stimulated, divalent metal cation uptake system
DKE39_008835	COG1063	alcohol dehydrogenase
DKE39_008855	COG2249	NAD(P)H dehydrogenase (quinone) activity
DKE39_008875	COG0864	Transcriptional regulator
DKE39_008885	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
DKE39_008965	COG2885	chlorophyll binding
DKE39_008965	COG3637	Has lipid A 3-O-deacylase activity. Hydrolyzes the ester bond at the 3 position of lipid A, a bioactive component of lipopolysaccharide (LPS), thereby releasing the primary fatty acyl moiety
DKE39_009005	COG0583	DNA-binding transcription factor activity
DKE39_009015	COG0590	tRNA wobble adenosine to inosine editing
DKE39_009050	COG0789	Transcriptional regulator
DKE39_009115	COG0531	amino acid
DKE39_009130	COG3396	Phenylacetate-CoA oxygenase
DKE39_009135	COG3460	Phenylacetate-CoA oxygenase
DKE39_009145	COG2151	metal-sulfur cluster biosynthetic enzyme
DKE39_009150	COG1018	Is involved in NO detoxification in an aerobic process, termed nitric oxide dioxygenase (NOD) reaction that utilizes O(2) and NAD(P)H to convert NO to nitrate, which protects the bacterium from various noxious nitrogen compounds. Therefore, plays a central role in the inducible response to nitrosative stress
DKE39_009155	COG1024	Enoyl-CoA hydratase
DKE39_009160	COG1024	Enoyl-CoA hydratase
DKE39_009190	COG2050	protein possibly involved in aromatic compounds catabolism
DKE39_009235	COG3038	cytochrome b561
DKE39_009255	COG2267	carboxylic ester hydrolase activity
DKE39_009260	COG1853	conserved protein domain typically associated with flavoprotein oxygenases, DIM6 NTAB family
DKE39_009265	COG2141	COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases
DKE39_009295	COG0599	Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity
DKE39_009315	COG0654	COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases
DKE39_009345	COG0075	2-aminoethylphosphonate-pyruvate transaminase activity
DKE39_009450	COG1960	acyl-CoA dehydrogenase activity
DKE39_009490	COG1960	acyl-CoA dehydrogenase activity
DKE39_009495	COG1309	transcriptional regulator
DKE39_009590	COG1974	Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair
DKE39_009655	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
DKE39_009670	COG1280	lysine exporter protein (LysE YggA)
DKE39_009680	COG0664	- Catabolite gene activator and regulatory subunit of cAMP-dependent protein
DKE39_009700	COG0583	DNA-binding transcription factor activity
DKE39_009705	COG0625	glutathione transferase activity
DKE39_009710	COG0625	glutathione transferase activity
DKE39_009715	COG0583	DNA-binding transcription factor activity
DKE39_009725	COG1346	cytolysis
DKE39_009755	COG1767	triphosphoribosyl-dephospho-CoA synthase activity
DKE39_009780	COG0331	[acyl-carrier-protein] S-malonyltransferase activity
DKE39_009800	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
DKE39_009835	COG0477	Major facilitator Superfamily
DKE39_009845	COG4521	taurine ABC transporter
DKE39_009850	COG4525	Part of the ABC transporter complex TauABC involved in taurine import. Responsible for energy coupling to the transport system
DKE39_009860	COG2175	clavaminate synthase activity
DKE39_009895	COG1001	Belongs to the metallo-dependent hydrolases superfamily. Adenine deaminase family
DKE39_009910	COG0640	Transcriptional regulator
DKE39_009915	COG0798	PFAM Bile acid sodium symporter
DKE39_009920	COG0583	DNA-binding transcription factor activity
DKE39_009935	COG3634	alkyl hydroperoxide reductase activity
DKE39_009985	COG0386	Belongs to the glutathione peroxidase family
DKE39_010025	COG1296	Branched-chain amino acid permease (Azaleucine resistance)
DKE39_010060	COG1135	Part of the ABC transporter complex MetNIQ involved in methionine import. Responsible for energy coupling to the transport system
DKE39_010070	COG1464	Belongs to the NlpA lipoprotein family
DKE39_010100	COG0765	amino acid transport
DKE39_010110	COG1126	abc transporter atp-binding protein
DKE39_010120	COG1522	sequence-specific DNA binding
DKE39_010140	COG0072	phenylalanine-tRNA ligase activity
DKE39_010140	COG0073	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
DKE39_010410	COG0583	DNA-binding transcription factor activity
DKE39_010490	COG0062	Bifunctional enzyme that catalyzes the epimerization of the S- and R-forms of NAD(P)HX and the dehydration of the S-form of NAD(P)HX at the expense of ADP, which is converted to AMP. This allows the repair of both epimers of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration
DKE39_010490	COG0063	ADP-dependent NAD(P)H-hydrate dehydratase activity
DKE39_010535	COG0192	Catalyzes the formation of S-adenosylmethionine (AdoMet) from methionine and ATP. The overall synthetic reaction is composed of two sequential steps, AdoMet formation and the subsequent tripolyphosphate hydrolysis which occurs prior to release of AdoMet from the enzyme
DKE39_010540	COG0021	Catalyzes the transfer of a two-carbon ketol group from a ketose donor to an aldose acceptor, via a covalent intermediate with the cofactor thiamine pyrophosphate
DKE39_010580	COG0506	proline dehydrogenase activity
DKE39_010580	COG4230	.,Oxidizes proline to glutamate for use as a carbon and nitrogen source
DKE39_010580	COG3905	.,Oxidizes proline to glutamate for use as a carbon and nitrogen source
DKE39_010590	COG0591	Belongs to the sodium solute symporter (SSF) (TC 2.A.21) family
DKE39_010595	COG0846	NAD-dependent lysine deacetylase and desuccinylase that specifically removes acetyl and succinyl groups on target proteins. Modulates the activities of several proteins which are inactive in their acylated form
DKE39_010615	COG1132	(ABC) transporter
DKE39_010625	COG3619	membrane
DKE39_010635	COG0640	Transcriptional regulator
DKE39_010650	COG0424	maF-like protein
DKE39_010670	COG0191	fructose-bisphosphate aldolase activity
DKE39_010690	COG1208	COG1208 Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis translation initiation factor 2B, gamma epsilon subunits eIF-2Bgamma eIF-2Bepsilon
DKE39_010700	COG1192	Involved in chromosome partitioning
DKE39_010705	COG1475	DNA binding
DKE39_010720	COG1132	(ABC) transporter
DKE39_010760	COG2165	general secretion pathway protein
DKE39_010790	COG0590	tRNA wobble adenosine to inosine editing
DKE39_010810	COG0776	regulation of translation
DKE39_010905	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
DKE39_010945	COG0684	Catalyzes the aldol cleavage of 4-hydroxy-4-methyl-2- oxoglutarate (HMG) into 2 molecules of pyruvate. Also contains a secondary oxaloacetate (OAA) decarboxylase activity due to the common pyruvate enolate transition state formed following C-C bond cleavage in the retro-aldol and decarboxylation reactions
DKE39_011035	COG2207	Transcriptional regulator
DKE39_011040	COG3696	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
DKE39_011050	COG1960	acyl-CoA dehydrogenase activity
DKE39_011065	COG2606	Belongs to the prolyl-tRNA editing family. YbaK EbsC subfamily
DKE39_011225	COG0842	Transport permease protein
DKE39_011370	COG3706	GGDEF domain
DKE39_011395	COG0022	dehydrogenase e1 component
DKE39_011415	COG1063	alcohol dehydrogenase
DKE39_011430	COG3453	Protein conserved in bacteria
DKE39_011430	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
DKE39_011440	COG0730	response to heat
DKE39_011460	COG1733	regulation of RNA biosynthetic process
DKE39_011525	COG1027	Aspartate ammonia-lyase
DKE39_011540	COG0583	DNA-binding transcription factor activity
DKE39_011550	COG0183	Belongs to the thiolase family
DKE39_011560	COG2057	Acyl CoA acetate 3-ketoacid CoA transferase beta subunit
DKE39_011580	COG2610	gluconate transmembrane transporter activity
DKE39_011610	COG1028	Short-chain dehydrogenase reductase Sdr
DKE39_011620	COG1853	conserved protein domain typically associated with flavoprotein oxygenases, DIM6 NTAB family
DKE39_011640	COG5517	Aromatic-ring-hydroxylating dioxygenase beta subunit
DKE39_011655	COG0725	ABC transporter, periplasmic molybdate-binding protein
DKE39_011660	COG4149	molybdate abc transporter
DKE39_011675	COG1535	isochorismatase
DKE39_011675	COG3433	isochorismatase activity
DKE39_011740	COG1502	Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol
DKE39_011765	COG1062	S-(hydroxymethyl)glutathione dehydrogenase activity
DKE39_011795	COG3539	Fimbrial protein
DKE39_011855	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
DKE39_011890	COG1028	Short-chain dehydrogenase reductase Sdr
DKE39_012115	COG1064	alcohol dehydrogenase
DKE39_012165	COG1012	belongs to the aldehyde dehydrogenase family
DKE39_012170	COG1012	belongs to the aldehyde dehydrogenase family
DKE39_012215	COG0111	D-isomer specific 2-hydroxyacid dehydrogenase
DKE39_012340	COG1335	isochorismatase
DKE39_012350	COG1309	transcriptional regulator
DKE39_012380	COG0262	Key enzyme in folate metabolism. Catalyzes an essential reaction for de novo glycine and purine synthesis, and for DNA precursor synthesis
DKE39_012395	COG1846	Transcriptional regulator
DKE39_012465	COG1028	Short-chain dehydrogenase reductase Sdr
DKE39_012490	COG1012	belongs to the aldehyde dehydrogenase family
DKE39_012510	COG2186	Transcriptional regulator
DKE39_012525	COG4948	Mandelate Racemase Muconate Lactonizing
DKE39_012530	COG4829	muconolactone delta-isomerase
DKE39_012545	COG2057	Acyl CoA acetate 3-ketoacid CoA transferase beta subunit
DKE39_012585	COG1853	conserved protein domain typically associated with flavoprotein oxygenases, DIM6 NTAB family
DKE39_012590	COG1853	conserved protein domain typically associated with flavoprotein oxygenases, DIM6 NTAB family
DKE39_012690	COG2391	methyltransferase activity
DKE39_012700	COG4993	Dehydrogenase
DKE39_012705	COG3659	wide pore channel activity
DKE39_012720	COG3485	protocatechuate 3,4-dioxygenase
DKE39_012730	COG0599	Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity
DKE39_012735	COG2271	Major facilitator Superfamily
DKE39_012745	COG0015	Belongs to the lyase 1 family. Adenylosuccinate lyase subfamily
DKE39_012755	COG2057	Acyl CoA acetate 3-ketoacid CoA transferase beta subunit
DKE39_012770	COG2919	Essential cell division protein. May link together the upstream cell division proteins, which are predominantly cytoplasmic, with the downstream cell division proteins, which are predominantly periplasmic
DKE39_012775	COG2323	membrane
DKE39_012820	COG0446	pyridine nucleotide-disulphide oxidoreductase
DKE39_012820	COG1902	pentaerythritol trinitrate reductase activity
DKE39_012835	COG0722	Stereospecific condensation of phosphoenolpyruvate (PEP) and D-erythrose-4-phosphate (E4P) giving rise to 3-deoxy-D- arabino-heptulosonate-7-phosphate (DAHP)
DKE39_012850	COG2127	Involved in the modulation of the specificity of the ClpAP-mediated ATP-dependent protein degradation
DKE39_012910	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
DKE39_012940	COG4890	Cyd operon protein YbgT
DKE39_012955	COG3110	Uncharacterized protein conserved in bacteria (DUF2057)
DKE39_012990	COG0517	IMP dehydrogenase activity
DKE39_012990	COG0516	GMP reductase activity
DKE39_013000	COG0278	Belongs to the glutaredoxin family. Monothiol subfamily
DKE39_013010	COG0583	DNA-binding transcription factor activity
DKE39_013015	COG0024	Methionine aminopeptidase
DKE39_013090	COG2135	peptidase activity
DKE39_013095	COG0659	secondary active sulfate transmembrane transporter activity
DKE39_013115	COG1113	amino acid transport
DKE39_013155	COG1188	Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit, (S4 paralog))
DKE39_013165	COG2137	regulation of response to DNA damage stimulus
DKE39_013180	COG1043	involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell
DKE39_013215	COG0575	Belongs to the CDS family
DKE39_013305	COG1087	Belongs to the NAD(P)-dependent epimerase dehydratase family
DKE39_013310	COG1553	Part of a sulfur-relay system required for 2-thiolation of 5-methylaminomethyl-2-thiouridine (mnm(5)s(2)U) at tRNA wobble positions. Accepts sulfur from TusA and transfers it in turn to TusE
DKE39_013350	COG0315	cyclic pyranopterin monophosphate synthase activity
DKE39_013350	COG0521	Mo-molybdopterin cofactor biosynthetic process
DKE39_013365	COG2896	Catalyzes the cyclization of GTP to (8S)-3',8-cyclo-7,8- dihydroguanosine 5'-triphosphate
DKE39_013425	COG0511	ligase activity, forming carbon-carbon bonds
DKE39_013860	COG3384	dioxygenase
DKE39_013880	COG0177	DNA repair enzyme that has both DNA N-glycosylase activity and AP-lyase activity. The DNA N-glycosylase activity releases various damaged pyrimidines from DNA by cleaving the N- glycosidic bond, leaving an AP (apurinic apyrimidinic) site. The AP-lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination, leaving a 3'-terminal unsaturated sugar and a product with a terminal 5'-phosphate
DKE39_013920	COG0830	nickel cation binding
DKE39_014030	COG1773	rubredoxin
DKE39_014045	COG0583	DNA-binding transcription factor activity
DKE39_014120	COG1262	PFAM Formylglycine-generating sulfatase enzyme
DKE39_014150	COG3958	Transketolase
DKE39_014155	COG3959	Transketolase, thiamine diphosphate binding domain
DKE39_014160	COG2271	Major facilitator Superfamily
DKE39_014165	COG1028	Short-chain dehydrogenase reductase Sdr
DKE39_014170	COG0583	DNA-binding transcription factor activity
DKE39_014190	COG2223	nitrite transmembrane transporter activity
DKE39_014195	COG2207	Transcriptional regulator
DKE39_014205	COG0242	peptide deformylase activity
DKE39_014235	COG1028	Short-chain dehydrogenase reductase Sdr
DKE39_014240	COG2267	carboxylic ester hydrolase activity
DKE39_014250	COG2271	Major facilitator Superfamily
DKE39_014255	COG0446	pyridine nucleotide-disulphide oxidoreductase
DKE39_014265	COG1028	Short-chain dehydrogenase reductase Sdr
DKE39_014325	COG4681	YaeQ
DKE39_014335	COG0523	cobalamin synthesis protein
DKE39_014345	COG1607	acyl-coa hydrolase
DKE39_014355	COG1292	Belongs to the BCCT transporter (TC 2.A.15) family
DKE39_014360	COG1292	Belongs to the BCCT transporter (TC 2.A.15) family
DKE39_014395	COG0531	amino acid
DKE39_014450	COG1595	DNA-templated transcription, initiation
DKE39_014520	COG2814	Major facilitator Superfamily
DKE39_014590	COG0735	belongs to the Fur family
DKE39_014595	COG2913	Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane
DKE39_014645	COG0210	DNA helicase
DKE39_014650	COG2885	chlorophyll binding
DKE39_014670	COG2894	cell division
DKE39_014700	COG0492	ferredoxin-NADP+ reductase activity
DKE39_014705	COG2360	Functions in the N-end rule pathway of protein degradation where it conjugates Leu, Phe and, less efficiently, Met from aminoacyl-tRNAs to the N-termini of proteins containing an N-terminal arginine or lysine
DKE39_014840	COG1145	4fe-4S ferredoxin, iron-sulfur binding domain protein
DKE39_014920	COG0462	Involved in the biosynthesis of the central metabolite phospho-alpha-D-ribosyl-1-pyrophosphate (PRPP) via the transfer of pyrophosphoryl group from ATP to 1-hydroxyl of ribose-5-phosphate (Rib-5-P)
DKE39_014965	COG1652	LysM domain
DKE39_014995	COG3101	peptidyl-lysine hydroxylation
DKE39_015000	COG0009	L-threonylcarbamoyladenylate synthase
DKE39_015005	COG1354	Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpB that pull DNA away from mid-cell into both cell halves
DKE39_015010	COG1386	Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpA that pull DNA away from mid-cell into both cell halves
DKE39_015025	COG4106	trans-aconitate 2-methyltransferase activity
DKE39_015050	COG0380	Probably involved in the osmoprotection via the biosynthesis of trehalose. Catalyzes the transfer of glucose from UDP-glucose (UDP-Glc) to D-glucose 6-phosphate (Glc-6-P) to form trehalose-6-phosphate. Acts with retention of the anomeric configuration of the UDP-sugar donor
DKE39_015055	COG2223	nitrite transmembrane transporter activity
DKE39_015110	COG0042	Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines
DKE39_015175	COG0489	protein tyrosine kinase activity
DKE39_015250	COG0583	DNA-binding transcription factor activity
DKE39_015275	COG1009	NADH ubiquinone oxidoreductase subunit 5 chain L Multisubunit Na H antiporter, MnhA subunit
DKE39_015345	COG0745	RESPONSE REGULATOR receiver
DKE39_015365	COG0208	Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides
DKE39_015495	COG1853	conserved protein domain typically associated with flavoprotein oxygenases, DIM6 NTAB family
DKE39_015510	COG0583	DNA-binding transcription factor activity
DKE39_015565	COG1053	succinate dehydrogenase
DKE39_015575	COG1804	L-carnitine dehydratase bile acid-inducible protein F
DKE39_015580	COG2814	Major facilitator Superfamily
DKE39_015595	COG1063	alcohol dehydrogenase
DKE39_015635	COG0350	Involved in the cellular defense against the biological effects of O6-methylguanine (O6-MeG) and O4-methylthymine (O4-MeT) in DNA. Repairs the methylated nucleobase in DNA by stoichiometrically transferring the methyl group to a cysteine residue in the enzyme. This is a suicide reaction the enzyme is irreversibly inactivated
DKE39_015665	COG0561	phosphatase activity
DKE39_015670	COG0036	Belongs to the ribulose-phosphate 3-epimerase family
DKE39_015690	COG1214	PFAM Peptidase M22, glycoprotease
DKE39_015750	COG0141	Catalyzes the sequential NAD-dependent oxidations of L- histidinol to L-histidinaldehyde and then to L-histidine
DKE39_015755	COG0040	Catalyzes the condensation of ATP and 5-phosphoribose 1- diphosphate to form N'-(5'-phosphoribosyl)-ATP (PR-ATP). Has a crucial role in the pathway because the rate of histidine biosynthesis seems to be controlled primarily by regulation of hisG enzymatic activity
DKE39_015820	COG0388	Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source
DKE39_015835	COG1764	response to oxidative stress
DKE39_015940	COG0292	Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit
DKE39_015960	COG0625	glutathione transferase activity
DKE39_015985	COG3028	Belongs to the UPF0307 family
DKE39_015990	COG1925	phosphoenolpyruvate-dependent sugar phosphotransferase system
DKE39_016010	COG0801	2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase
DKE39_016020	COG1555	photosystem II stabilization
DKE39_016025	COG3956	TIGRFAM MazG family protein
DKE39_016035	COG0317	In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance
DKE39_016055	COG0784	Response regulator, receiver
DKE39_016055	COG5002	protein histidine kinase activity
DKE39_016055	COG2205	protein histidine kinase activity
DKE39_016070	COG3622	Belongs to the hyi family
DKE39_016090	COG3288	NAD(P)+ transhydrogenase (AB-specific) activity
DKE39_016125	COG0583	DNA-binding transcription factor activity
DKE39_016150	COG0084	hydrolase, TatD family'
DKE39_016200	COG0440	acetolactate synthase activity
DKE39_016240	COG0577	efflux transmembrane transporter activity
DKE39_016240	COG1136	(ABC) transporter
DKE39_016245	COG1538	Outer membrane efflux protein
DKE39_016275	COG0695	Has a glutathione-disulfide oxidoreductase activity in the presence of NADPH and glutathione reductase. Reduces low molecular weight disulfides and proteins
DKE39_016300	COG1028	Short-chain dehydrogenase reductase Sdr
DKE39_016365	COG0236	Carrier of the growing fatty acid chain in fatty acid biosynthesis
DKE39_016370	COG0236	Carrier of the growing fatty acid chain in fatty acid biosynthesis
DKE39_016445	COG0793	Belongs to the peptidase S41A family
DKE39_016460	COG2267	carboxylic ester hydrolase activity
DKE39_016485	COG0800	Aldolase
DKE39_016495	COG0282	Catalyzes the formation of acetyl phosphate from acetate and ATP. Can also catalyze the reverse reaction
DKE39_016505	COG1951	Catalyzes the reversible hydration of fumarate to (S)- malate
DKE39_016505	COG1838	Catalyzes the reversible hydration of fumarate to (S)- malate
DKE39_016525	COG0740	serine-type endopeptidase activity
DKE39_016670	COG0227	Belongs to the bacterial ribosomal protein bL28 family
DKE39_016700	COG0724	RNA recognition motif
DKE39_016730	COG1733	regulation of RNA biosynthetic process
DKE39_016750	COG1280	lysine exporter protein (LysE YggA)
DKE39_016755	COG1560	Kdo2-lipid A biosynthetic process
DKE39_016820	COG0473	3-isopropylmalate dehydrogenase activity
DKE39_016895	COG0625	glutathione transferase activity
DKE39_016900	COG2378	regulation of single-species biofilm formation
DKE39_016905	COG0546	phosphoglycolate phosphatase activity
DKE39_016940	COG0583	DNA-binding transcription factor activity
DKE39_016950	COG0635	Involved in the biosynthesis of porphyrin-containing compound
DKE39_016975	COG0661	Is probably a protein kinase regulator of UbiI activity which is involved in aerobic coenzyme Q (ubiquinone) biosynthesis
DKE39_017015	COG3024	Inhibits all the catalytic activities of DNA gyrase by preventing its interaction with DNA. Acts by binding directly to the C-terminal domain of GyrB, which probably disrupts DNA binding by the gyrase
DKE39_017020	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
DKE39_017045	COG0644	oxidoreductase
DKE39_017045	COG2440	electron transfer flavoprotein-ubiquinone oxidoreductase
DKE39_017050	COG0425	Belongs to the sulfur carrier protein TusA family
DKE39_017055	COG4535	Mg2 and Co2 transporter CorC
DKE39_017065	COG0073	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
DKE39_017090	COG1226	(belongs to the monovalent cation proton antiporter 2 (CPA2) transporter (TC 2.A.37) family)
DKE39_017090	COG0475	glutathione-regulated potassium exporter activity
DKE39_017095	COG1281	Redox regulated molecular chaperone. Protects both thermally unfolding and oxidatively damaged proteins from irreversible aggregation. Plays an important role in the bacterial defense system toward oxidative stress
DKE39_017105	COG0484	heat shock protein binding
DKE39_017205	COG1006	Multisubunit Na H antiporter MnhC subunit
DKE39_017210	COG0651	ATP synthesis coupled electron transport
DKE39_017220	COG2212	antiporter activity
DKE39_017240	COG0195	Participates in both transcription termination and antitermination
DKE39_017325	COG0816	Could be a nuclease involved in processing of the 5'-end of pre-16S rRNA
DKE39_017355	COG0350	Involved in the cellular defense against the biological effects of O6-methylguanine (O6-MeG) and O4-methylthymine (O4-MeT) in DNA. Repairs the methylated nucleobase in DNA by stoichiometrically transferring the methyl group to a cysteine residue in the enzyme. This is a suicide reaction the enzyme is irreversibly inactivated
DKE39_017355	COG2169	Transcriptional regulator
DKE39_017360	COG0558	Belongs to the CDP-alcohol phosphatidyltransferase class-I family
DKE39_017445	COG0326	Molecular chaperone. Has ATPase activity
DKE39_017460	COG2056	Na+-H+ antiporter family
DKE39_017465	COG0596	Alpha beta hydrolase
DKE39_017560	COG0546	phosphoglycolate phosphatase activity
DKE39_017565	COG1716	ATPase activity
DKE39_017610	COG0181	hydroxymethylbilane synthase activity
DKE39_017645	COG0697	spore germination
DKE39_017675	COG1734	Transcription factor that acts by binding directly to the RNA polymerase (RNAP). Required for negative regulation of rRNA expression and positive regulation of several amino acid biosynthesis promoters
DKE39_017685	COG0772	Belongs to the SEDS family
DKE39_017710	COG4974	Belongs to the 'phage' integrase family
DKE39_017735	COG2197	response regulator
DKE39_017755	COG0696	Catalyzes the interconversion of 2-phosphoglycerate and 3-phosphoglycerate
DKE39_017760	COG0795	lipopolysaccharide-transporting ATPase activity
DKE39_017810	COG0004	ammonium transporteR
DKE39_017880	COG0659	secondary active sulfate transmembrane transporter activity
DKE39_017980	COG4973	Belongs to the 'phage' integrase family. XerC subfamily
DKE39_018010	COG0659	secondary active sulfate transmembrane transporter activity
DKE39_018015	COG0589	response to stress
DKE39_018045	COG0606	chelatase, subunit chli
DKE39_018050	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
DKE39_018075	COG0221	Catalyzes the hydrolysis of inorganic pyrophosphate (PPi) forming two phosphate ions
DKE39_018100	COG0477	Major facilitator Superfamily
DKE39_018105	COG2860	membrane
DKE39_018115	COG1253	flavin adenine dinucleotide binding
DKE39_018180	COG0031	Belongs to the cysteine synthase cystathionine beta- synthase family
DKE39_018215	COG1309	transcriptional regulator
DKE39_018250	COG0758	DNA mediated transformation
DKE39_018265	COG1309	transcriptional regulator
DKE39_018280	COG0386	Belongs to the glutathione peroxidase family
DKE39_018365	COG0281	malic enzyme
DKE39_018430	COG2259	Doxx family
DKE39_018435	COG0586	Pfam SNARE associated Golgi protein
DKE39_018460	COG0271	Belongs to the BolA IbaG family
DKE39_018485	COG2197	response regulator
DKE39_018510	COG0365	Catalyzes the conversion of acetate into acetyl-CoA (AcCoA), an essential intermediate at the junction of anabolic and catabolic pathways. AcsA undergoes a two-step reaction. In the first half reaction, AcsA combines acetate with ATP to form acetyl-adenylate (AcAMP) intermediate. In the second half reaction, it can then transfer the acetyl group from AcAMP to the sulfhydryl group of CoA, forming the product AcCoA
DKE39_018530	COG1113	amino acid transport
DKE39_018540	COG0251	oxidation-reduction process
DKE39_018555	COG1522	sequence-specific DNA binding
DKE39_018580	COG0564	pseudouridine synthase activity
DKE39_018650	COG1448	Aminotransferase
DKE39_018665	COG2186	Transcriptional regulator
DKE39_018675	COG1109	Catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate
DKE39_018695	COG1087	Belongs to the NAD(P)-dependent epimerase dehydratase family
DKE39_018710	COG1210	Utp--glucose-1-phosphate uridylyltransferase
DKE39_018760	COG5039	Polysaccharide pyruvyl transferase
DKE39_018775	COG1596	polysaccharide export
DKE39_018860	COG0546	phosphoglycolate phosphatase activity
DKE39_018865	COG1028	Short-chain dehydrogenase reductase Sdr
DKE39_018895	COG2141	COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases
DKE39_018900	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
DKE39_018905	COG1116	anion transmembrane transporter activity
DKE39_018940	COG1047	Peptidyl-prolyl cis-trans
DKE39_018980	COG0652	PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides
DKE39_019040	COG2951	lytic endotransglycosylase activity
DKE39_019060	COG0773	UDP-N-acetylmuramate-L-alanine ligase activity
DKE39_019070	COG0671	phosphoesterase, PA-phosphatase related
DKE39_019085	COG0754	glutathionylspermidine amidase activity
DKE39_019110	COG1651	Required for disulfide bond formation in some periplasmic proteins. Acts by transferring its disulfide bond to other proteins and is reduced in the process
DKE39_019145	COG0230	Belongs to the bacterial ribosomal protein bL34 family
DKE39_019160	COG0358	DNA primase activity
DKE39_019340	COG1135	Part of the ABC transporter complex MetNIQ involved in methionine import. Responsible for energy coupling to the transport system
DKE39_019375	COG1388	LysM domain
DKE39_019560	COG0847	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. The epsilon subunit contain the editing function and is a proofreading 3'-5' exonuclease
DKE39_019680	COG0587	DNA-directed DNA polymerase activity