locus-tag class description PF552_00005 PF00308 Bacterial dnaA protein PF552_00005 PF08299 Bacterial dnaA protein helix-turn-helix PF552_00005 PF11638 DnaA N-terminal domain PF552_00010 PF00712 DNA polymerase III beta subunit, N-terminal domain PF552_00010 PF02767 DNA polymerase III beta subunit, central domain PF552_00010 PF02768 DNA polymerase III beta subunit, C-terminal domain PF552_00015 PF02463 RecF/RecN/SMC N terminal domain PF552_00020 PF00204 DNA gyrase B PF552_00020 PF00986 DNA gyrase B subunit, carboxyl terminus PF552_00020 PF18053 DNA gyrase B subunit insert domain PF552_00020 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PF552_00020 PF01751 Toprim domain PF552_00030 PF09335 SNARE associated Golgi protein PF552_00035 PF00005 ABC transporter PF552_00035 PF12848 ABC transporter PF552_00055 PF01521 Iron-sulphur cluster biosynthesis PF552_00060 PF00561 alpha/beta hydrolase fold PF552_00065 PF03702 Anhydro-N-acetylmuramic acid kinase PF552_00070 PF00579 tRNA synthetases class I (W and Y) PF552_00110 PF00209 Sodium:neurotransmitter symporter family PF552_00120 PF01189 16S rRNA methyltransferase RsmB/F PF552_00120 PF01029 NusB family PF552_00125 PF00551 Formyl transferase PF552_00125 PF02911 Formyl transferase, C-terminal domain PF552_00130 PF00920 Dehydratase family PF552_00145 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family PF552_00145 PF03466 LysR substrate binding domain PF552_00150 PF00860 Permease family PF552_00155 PF00311 Phosphoenolpyruvate carboxylase PF552_00160 PF08361 MAATS-type transcriptional repressor, C-terminal region PF552_00160 PF00440 Bacterial regulatory proteins, tetR family PF552_00165 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion PF552_00180 PF00684 DnaJ central domain PF552_00180 PF00226 DnaJ domain PF552_00180 PF01556 DnaJ C terminal domain PF552_00190 PF01113 Dihydrodipicolinate reductase, N-terminus PF552_00190 PF05173 Dihydrodipicolinate reductase, C-terminus PF552_00200 PF07690 Major Facilitator Superfamily PF552_00205 PF00248 Aldo/keto reductase family PF552_00210 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family PF552_00210 PF03466 LysR substrate binding domain PF552_00225 PF00392 Bacterial regulatory proteins, gntR family PF552_00225 PF00155 Aminotransferase class I and II PF552_00230 PF00107 Zinc-binding dehydrogenase PF552_00230 PF08240 Alcohol dehydrogenase GroES-like domain PF552_00235 PF03352 Methyladenine glycosylase PF552_00250 PF00633 Helix-hairpin-helix motif PF552_00250 PF14815 NUDIX domain PF552_00250 PF00730 HhH-GPD superfamily base excision DNA repair protein PF552_00250 PF10576 Iron-sulfur binding domain of endonuclease III PF552_00265 PF07043 Protein of unknown function (DUF1328) PF552_00270 PF03692 Putative zinc- or iron-chelating domain PF552_00280 PF00419 Fimbrial protein PF552_00285 PF02753 Pili assembly chaperone PapD, C-terminal domain PF552_00285 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain PF552_00290 PF00577 Outer membrane usher protein PF552_00290 PF13953 PapC C-terminal domain PF552_00290 PF13954 PapC N-terminal domain PF552_00305 PF12002 MgsA AAA+ ATPase C terminal PF552_00305 PF16193 AAA C-terminal domain PF552_00305 PF00004 ATPase family associated with various cellular activities (AAA) PF552_00310 PF01226 Formate/nitrite transporter PF552_00320 PF01259 SAICAR synthetase PF552_00330 PF00701 Dihydrodipicolinate synthetase family PF552_00335 PF00857 Isochorismatase family PF552_00340 PF01758 Sodium Bile acid symporter family PF552_00345 PF01554 MatE PF552_00350 PF04463 Protein of unknown function (DUF523) PF552_00355 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily PF552_00365 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily PF552_00370 PF02798 Glutathione S-transferase, N-terminal domain PF552_00370 PF14497 Glutathione S-transferase, C-terminal domain PF552_00380 PF00324 Amino acid permease PF552_00390 PF02492 CobW/HypB/UreG, nucleotide-binding domain PF552_00390 PF07683 Cobalamin synthesis protein cobW C-terminal domain PF552_00400 PF07702 UTRA domain PF552_00400 PF00392 Bacterial regulatory proteins, gntR family PF552_00405 PF05962 HutD PF552_00410 PF17392 Urocanase C-terminal domain PF552_00410 PF17391 Urocanase N-terminal domain PF552_00410 PF01175 Urocanase Rossmann-like domain PF552_00415 PF00221 Aromatic amino acid lyase PF552_00420 PF00324 Amino acid permease PF552_00425 PF01979 Amidohydrolase family PF552_00430 PF00491 Arginase family PF552_00445 PF01177 Asp/Glu/Hydantoin racemase PF552_00450 PF01810 LysE type translocator PF552_00475 PF01380 SIS domain PF552_00480 PF12804 MobA-like NTP transferase domain PF552_00480 PF14602 Hexapeptide repeat of succinyl-transferase PF552_00480 PF00132 Bacterial transferase hexapeptide (six repeats) PF552_00485 PF04608 Phosphatidylglycerophosphatase A PF552_00490 PF00586 AIR synthase related protein, N-terminal domain PF552_00490 PF02769 AIR synthase related protein, C-terminal domain PF552_00495 PF01029 NusB family PF552_00500 PF00885 6,7-dimethyl-8-ribityllumazine synthase PF552_00505 PF00925 GTP cyclohydrolase II PF552_00505 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase PF552_00530 PF02580 D-Tyr-tRNA(Tyr) deacylase PF552_00535 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family PF552_00535 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain PF552_00540 PF00581 Rhodanese-like domain PF552_00545 PF02666 Phosphatidylserine decarboxylase PF552_00555 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PF552_00555 PF00512 His Kinase A (phospho-acceptor) domain PF552_00555 PF00989 PAS fold PF552_00555 PF11808 Phosphate regulon sensor protein PhoR PF552_00560 PF00486 Transcriptional regulatory protein, C terminal PF552_00560 PF00072 Response regulator receiver domain PF552_00570 PF00106 short chain dehydrogenase PF552_00575 PF01554 MatE PF552_00580 PF00155 Aminotransferase class I and II PF552_00585 PF04286 Protein of unknown function (DUF445) PF552_00600 PF04262 Glutamate-cysteine ligase PF552_00605 PF02600 Disulfide bond formation protein DsbB PF552_00625 PF05728 Uncharacterised protein family (UPF0227) PF552_00630 PF01751 Toprim domain PF552_00630 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PF552_00630 PF00986 DNA gyrase B subunit, carboxyl terminus PF552_00630 PF00204 DNA gyrase B PF552_00635 PF04115 Ureidoglycolate lyase PF552_00640 PF03561 Allantoicase repeat PF552_00645 PF01494 FAD binding domain PF552_00655 PF00860 Permease family PF552_00660 PF00576 HIUase/Transthyretin family PF552_00690 PF11412 Disulphide bond corrector protein DsbC PF552_00690 PF02683 Cytochrome C biogenesis protein transmembrane region PF552_00695 PF07694 5TMR of 5TMR-LYT PF552_00695 PF00990 Diguanylate cyclase, GGDEF domain PF552_00700 PF07859 alpha/beta hydrolase fold PF552_00710 PF03960 ArsC family PF552_00715 PF03372 Endonuclease/Exonuclease/phosphatase family PF552_00720 PF00156 Phosphoribosyl transferase domain PF552_00725 PF00593 TonB dependent receptor PF552_00725 PF07715 TonB-dependent Receptor Plug Domain PF552_00735 PF02951 Prokaryotic glutathione synthetase, N-terminal domain PF552_00735 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain PF552_00740 PF03033 Glycosyltransferase family 28 N-terminal domain PF552_00740 PF04101 Glycosyltransferase family 28 C-terminal domain PF552_00745 PF08245 Mur ligase middle domain PF552_00745 PF02875 Mur ligase family, glutamate ligase domain PF552_00745 PF01225 Mur ligase family, catalytic domain PF552_00750 PF01820 D-ala D-ala ligase N-terminus PF552_00750 PF07478 D-ala D-ala ligase C-terminus PF552_00755 PF08478 POTRA domain, FtsQ-type PF552_00755 PF03799 Cell division protein FtsQ PF552_00760 PF02491 SHS2 domain inserted in FTSA PF552_00765 PF00091 Tubulin/FtsZ family, GTPase domain PF552_00765 PF12327 FtsZ family, C-terminal domain PF552_00770 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase PF552_00780 PF01551 Peptidase family M23 PF552_00785 PF17831 Pyruvate dehydrogenase E1 component middle domain PF552_00785 PF00456 Transketolase, thiamine diphosphate binding domain PF552_00790 PF02817 e3 binding domain PF552_00790 PF00364 Biotin-requiring enzyme PF552_00790 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) PF552_00800 PF01169 Uncharacterized protein family UPF0016 PF552_00805 PF00593 TonB dependent receptor PF552_00805 PF07715 TonB-dependent Receptor Plug Domain PF552_00810 PF00258 Flavodoxin PF552_00810 PF01613 Flavin reductase like domain PF552_00815 PF03692 Putative zinc- or iron-chelating domain PF552_00820 PF00478 IMP dehydrogenase / GMP reductase domain PF552_00820 PF00571 CBS domain PF552_00825 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain PF552_00825 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II PF552_00825 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I PF552_00825 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III PF552_00830 PF01243 Pyridoxamine 5'-phosphate oxidase PF552_00830 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region PF552_00835 PF01368 DHH family PF552_00835 PF02272 DHHA1 domain PF552_00835 PF17768 RecJ OB domain PF552_00860 PF00724 NADH:flavin oxidoreductase / NADH oxidase family PF552_00865 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) PF552_00870 PF04452 RNA methyltransferase PF552_00875 PF00924 Mechanosensitive ion channel PF552_00885 PF00501 AMP-binding enzyme PF552_00885 PF13193 AMP-binding enzyme C-terminal domain PF552_00885 PF16177 Acetyl-coenzyme A synthetase N-terminus PF552_00890 PF00857 Isochorismatase family PF552_00895 PF01037 Lrp/AsnC ligand binding domain PF552_00900 PF00296 Luciferase-like monooxygenase PF552_00905 PF03358 NADPH-dependent FMN reductase PF552_00910 PF00072 Response regulator receiver domain PF552_00910 PF00196 Bacterial regulatory proteins, luxR family PF552_00920 PF00672 HAMP domain PF552_00920 PF01627 Hpt domain PF552_00920 PF00512 His Kinase A (phospho-acceptor) domain PF552_00920 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PF552_00920 PF00072 Response regulator receiver domain PF552_00925 PF04341 Protein of unknown function, DUF485 PF552_00930 PF00474 Sodium:solute symporter family PF552_00940 PF02028 BCCT, betaine/carnitine/choline family transporter PF552_00950 PF00990 Diguanylate cyclase, GGDEF domain PF552_00960 PF00005 ABC transporter PF552_00960 PF17755 UvrA DNA-binding domain PF552_00960 PF17760 UvrA interaction domain PF552_00965 PF16925 Tetracyclin repressor-like, C-terminal domain PF552_00965 PF00440 Bacterial regulatory proteins, tetR family PF552_00970 PF08240 Alcohol dehydrogenase GroES-like domain PF552_00970 PF00107 Zinc-binding dehydrogenase PF552_00980 PF06942 GlpM protein PF552_00985 PF03070 TENA/THI-4/PQQC family PF552_00985 PF02581 Thiamine monophosphate synthase PF552_00985 PF08543 Phosphomethylpyrimidine kinase PF552_00995 PF07690 Major Facilitator Superfamily PF552_01000 PF00436 Single-strand binding protein family PF552_01005 PF13533 Biotin-lipoyl like PF552_01010 PF00664 ABC transporter transmembrane region PF552_01010 PF03412 Peptidase C39 family PF552_01010 PF00005 ABC transporter PF552_01035 PF03591 AzlC protein PF552_01045 PF00324 Amino acid permease PF552_01050 PF00392 Bacterial regulatory proteins, gntR family PF552_01050 PF00155 Aminotransferase class I and II PF552_01055 PF00202 Aminotransferase class-III PF552_01060 PF00171 Aldehyde dehydrogenase family PF552_01065 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family PF552_01070 PF00857 Isochorismatase family PF552_01075 PF02678 Pirin PF552_01075 PF05726 Pirin C-terminal cupin domain PF552_01080 PF01593 Flavin containing amine oxidoreductase PF552_01095 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term PF552_01095 PF12833 Helix-turn-helix domain PF552_01105 PF07690 Major Facilitator Superfamily PF552_01110 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family PF552_01110 PF03466 LysR substrate binding domain PF552_01115 PF00873 AcrB/AcrD/AcrF family PF552_01120 PF00529 HlyD membrane-fusion protein of T1SS PF552_01120 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion PF552_01125 PF00440 Bacterial regulatory proteins, tetR family PF552_01145 PF00248 Aldo/keto reductase family PF552_01150 PF02311 AraC-like ligand binding domain PF552_01150 PF12833 Helix-turn-helix domain PF552_01180 PF01638 HxlR-like helix-turn-helix PF552_01185 PF02525 Flavodoxin-like fold PF552_01215 PF02705 K+ potassium transporter PF552_01240 PF00230 Major intrinsic protein PF552_01255 PF00977 Histidine biosynthesis protein PF552_01260 PF01636 Phosphotransferase enzyme family PF552_01275 PF03992 Antibiotic biosynthesis monooxygenase PF552_01290 PF00005 ABC transporter PF552_01290 PF00664 ABC transporter transmembrane region PF552_01295 PF00977 Histidine biosynthesis protein PF552_01310 PF00117 Glutamine amidotransferase class-I PF552_01315 PF00475 Imidazoleglycerol-phosphate dehydratase PF552_01335 PF00583 Acetyltransferase (GNAT) family PF552_01340 PF02550 Acetyl-CoA hydrolase/transferase N-terminal domain PF552_01340 PF13336 Acetyl-CoA hydrolase/transferase C-terminal domain PF552_01350 PF00672 HAMP domain PF552_01350 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PF552_01350 PF00512 His Kinase A (phospho-acceptor) domain PF552_01355 PF00072 Response regulator receiver domain PF552_01355 PF00486 Transcriptional regulatory protein, C terminal PF552_01360 PF00575 S1 RNA binding domain PF552_01360 PF09371 Tex-like protein N-terminal domain PF552_01360 PF16921 Tex protein YqgF-like domain PF552_01360 PF17674 HHH domain PF552_01365 PF00916 Sulfate permease family PF552_01365 PF01740 STAS domain PF552_01370 PF00106 short chain dehydrogenase PF552_01375 PF01053 Cys/Met metabolism PLP-dependent enzyme PF552_01380 PF00005 ABC transporter PF552_01380 PF12848 ABC transporter PF552_01405 PF00529 HlyD membrane-fusion protein of T1SS PF552_01405 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion PF552_01410 PF00873 AcrB/AcrD/AcrF family PF552_01415 PF01545 Cation efflux family PF552_01445 PF00324 Amino acid permease PF552_01460 PF00749 tRNA synthetases class I (E and Q), catalytic domain PF552_01475 PF01795 MraW methylase family PF552_01485 PF00905 Penicillin binding protein transpeptidase domain PF552_01485 PF03717 Penicillin-binding Protein dimerisation domain PF552_01490 PF08245 Mur ligase middle domain PF552_01490 PF02875 Mur ligase family, glutamate ligase domain PF552_01490 PF01225 Mur ligase family, catalytic domain PF552_01495 PF01225 Mur ligase family, catalytic domain PF552_01495 PF02875 Mur ligase family, glutamate ligase domain PF552_01495 PF08245 Mur ligase middle domain PF552_01500 PF00953 Glycosyl transferase family 4 PF552_01510 PF13847 Methyltransferase domain PF552_01515 PF17092 Penicillin-binding protein OB-like domain PF552_01515 PF00912 Transglycosylase PF552_01515 PF00905 Penicillin binding protein transpeptidase domain PF552_01525 PF11104 Type IV pilus assembly protein PilM; PF552_01530 PF05137 Fimbrial assembly protein (PilN) PF552_01535 PF04350 Pilus assembly protein, PilO PF552_01550 PF01202 Shikimate kinase PF552_01555 PF01761 3-dehydroquinate synthase PF552_01565 PF01493 GXGXG motif PF552_01565 PF01645 Conserved region in glutamate synthase PF552_01565 PF00310 Glutamine amidotransferases class-II PF552_01565 PF04898 Glutamate synthase central domain PF552_01570 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster PF552_01570 PF07992 Pyridine nucleotide-disulphide oxidoreductase PF552_01580 PF04011 LemA family PF552_01585 PF04536 TPM domain PF552_01595 PF00114 Pilin (bacterial filament) PF552_01595 PF07963 Prokaryotic N-terminal methylation motif PF552_01600 PF11846 Virulence factor membrane-bound polymerase, C-terminal PF552_01600 PF04932 O-Antigen ligase PF552_01600 PF15864 Protein glycosylation ligase PF552_01605 PF00210 Ferritin-like domain PF552_01610 PF04324 BFD-like [2Fe-2S] binding domain PF552_01615 PF01042 Endoribonuclease L-PSP PF552_01620 PF02824 TGS domain PF552_01620 PF04607 Region found in RelA / SpoT proteins PF552_01620 PF13291 ACT domain PF552_01630 PF01192 RNA polymerase Rpb6 PF552_01635 PF00625 Guanylate kinase PF552_01640 PF02401 LytB protein PF552_01685 PF00886 Ribosomal protein S16 PF552_01690 PF01782 RimM N-terminal domain PF552_01690 PF05239 PRC-barrel domain PF552_01695 PF01746 tRNA (Guanine-1)-methyltransferase PF552_01700 PF01245 Ribosomal protein L19 PF552_01705 PF00561 alpha/beta hydrolase fold PF552_01710 PF03280 Proteobacterial lipase chaperone protein PF552_01715 PF01509 TruB family pseudouridylate synthase (N terminal domain) PF552_01715 PF16198 tRNA pseudouridylate synthase B C-terminal domain PF552_01715 PF09157 Pseudouridine synthase II TruB, C-terminal PF552_01720 PF01925 Sulfite exporter TauE/SafE PF552_01730 PF00892 EamA-like transporter family PF552_01735 PF00892 EamA-like transporter family PF552_01740 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain PF552_01740 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain PF552_01745 PF02913 FAD linked oxidases, C-terminal domain PF552_01745 PF01565 FAD binding domain PF552_01755 PF03992 Antibiotic biosynthesis monooxygenase PF552_01760 PF02525 Flavodoxin-like fold PF552_01770 PF07690 Major Facilitator Superfamily PF552_01775 PF12805 FUSC-like inner membrane protein yccS PF552_01780 PF00080 Copper/zinc superoxide dismutase (SODC) PF552_01785 PF01594 AI-2E family transporter PF552_01790 PF13614 AAA domain PF552_01810 PF08241 Methyltransferase domain PF552_01820 PF00324 Amino acid permease PF552_01825 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain PF552_01825 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase PF552_01830 PF00202 Aminotransferase class-III PF552_01835 PF04958 Arginine N-succinyltransferase beta subunit PF552_01840 PF00171 Aldehyde dehydrogenase family PF552_01845 PF04996 Succinylarginine dihydrolase PF552_01850 PF04952 Succinylglutamate desuccinylase / Aspartoacylase family PF552_01865 PF05922 Peptidase inhibitor I9 PF552_01865 PF00082 Subtilase family PF552_01880 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family PF552_01880 PF03466 LysR substrate binding domain PF552_01885 PF00892 EamA-like transporter family PF552_01900 PF05746 DALR anticodon binding domain PF552_01900 PF02092 Glycyl-tRNA synthetase beta subunit PF552_01905 PF02091 Glycyl-tRNA synthetase alpha subunit PF552_01930 PF00571 CBS domain PF552_01935 PF04024 PspC domain PF552_01945 PF12806 Acetyl-CoA dehydrogenase C-terminal like PF552_01945 PF02770 Acyl-CoA dehydrogenase, middle domain PF552_01945 PF02771 Acyl-CoA dehydrogenase, N-terminal domain PF552_01945 PF00441 Acyl-CoA dehydrogenase, C-terminal domain PF552_01955 PF18317 Shikimate 5'-dehydrogenase C-terminal domain PF552_01955 PF01488 Shikimate / quinate 5-dehydrogenase PF552_01955 PF08501 Shikimate dehydrogenase substrate binding domain PF552_01960 PF01218 Coproporphyrinogen III oxidase PF552_01965 PF00925 GTP cyclohydrolase II PF552_01970 PF02779 Transketolase, pyrimidine binding domain PF552_01970 PF13292 1-deoxy-D-xylulose-5-phosphate synthase PF552_01970 PF02780 Transketolase, C-terminal domain PF552_01975 PF00459 Inositol monophosphatase family PF552_01980 PF03880 DbpA RNA binding domain PF552_01980 PF00270 DEAD/DEAH box helicase PF552_01980 PF12343 Cold shock protein DEAD box A PF552_01980 PF00271 Helicase conserved C-terminal domain PF552_01990 PF00005 ABC transporter PF552_01995 PF02405 Permease MlaE PF552_02005 PF05494 MlaC protein PF552_02015 PF01544 CorA-like Mg2+ transporter protein PF552_02020 PF03641 Possible lysine decarboxylase PF552_02025 PF00293 NUDIX domain PF552_02030 PF00156 Phosphoribosyl transferase domain PF552_02035 PF17191 RecG wedge domain PF552_02035 PF00271 Helicase conserved C-terminal domain PF552_02035 PF00270 DEAD/DEAH box helicase PF552_02050 PF01553 Acyltransferase PF552_02060 PF00375 Sodium:dicarboxylate symporter family PF552_02070 PF01926 50S ribosome-binding GTPase PF552_02075 PF02082 Transcriptional regulator PF552_02080 PF00970 Oxidoreductase FAD-binding domain PF552_02080 PF00042 Globin PF552_02080 PF00175 Oxidoreductase NAD-binding domain PF552_02095 PF00117 Glutamine amidotransferase class-I PF552_02100 PF00338 Ribosomal protein S10p/S20e PF552_02105 PF00297 Ribosomal protein L3 PF552_02110 PF00573 Ribosomal protein L4/L1 family PF552_02115 PF00276 Ribosomal protein L23 PF552_02120 PF00181 Ribosomal Proteins L2, RNA binding domain PF552_02120 PF03947 Ribosomal Proteins L2, C-terminal domain PF552_02125 PF00203 Ribosomal protein S19 PF552_02130 PF00237 Ribosomal protein L22p/L17e PF552_02140 PF00252 Ribosomal protein L16p/L10e PF552_02145 PF00831 Ribosomal L29 protein PF552_02150 PF00366 Ribosomal protein S17 PF552_02155 PF00238 Ribosomal protein L14p/L23e PF552_02160 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 PF552_02160 PF00467 KOW motif PF552_02165 PF00673 ribosomal L5P family C-terminus PF552_02165 PF00281 Ribosomal protein L5 PF552_02170 PF00253 Ribosomal protein S14p/S29e PF552_02175 PF00410 Ribosomal protein S8 PF552_02180 PF00347 Ribosomal protein L6 PF552_02185 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast PF552_02190 PF03719 Ribosomal protein S5, C-terminal domain PF552_02190 PF00333 Ribosomal protein S5, N-terminal domain PF552_02195 PF00327 Ribosomal protein L30p/L7e PF552_02200 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A PF552_02205 PF00344 SecY translocase PF552_02210 PF00444 Ribosomal protein L36 PF552_02215 PF00416 Ribosomal protein S13/S18 PF552_02220 PF00411 Ribosomal protein S11 PF552_02225 PF00163 Ribosomal protein S4/S9 N-terminal domain PF552_02225 PF01479 S4 domain PF552_02230 PF01000 RNA polymerase Rpb3/RpoA insert domain PF552_02230 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain PF552_02230 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain PF552_02235 PF01196 Ribosomal protein L17 PF552_02240 PF00743 Flavin-binding monooxygenase-like PF552_02245 PF00441 Acyl-CoA dehydrogenase, C-terminal domain PF552_02245 PF02770 Acyl-CoA dehydrogenase, middle domain PF552_02245 PF02771 Acyl-CoA dehydrogenase, N-terminal domain PF552_02250 PF03937 Flavinator of succinate dehydrogenase PF552_02280 PF09526 Probable metal-binding protein (DUF2387) PF552_02285 PF01432 Peptidase family M3 PF552_02290 PF08461 Ribonuclease R winged-helix domain PF552_02290 PF08206 Ribonuclease B OB domain PF552_02290 PF00773 RNB domain PF552_02290 PF00575 S1 RNA binding domain PF552_02290 PF17876 Cold shock domain PF552_02335 PF01557 Fumarylacetoacetate (FAA) hydrolase family PF552_02340 PF12833 Helix-turn-helix domain PF552_02345 PF00892 EamA-like transporter family PF552_02350 PF03631 Virulence factor BrkB PF552_02355 PF03358 NADPH-dependent FMN reductase PF552_02380 PF02130 Uncharacterized protein family UPF0054 PF552_02385 PF02562 PhoH-like protein PF552_02390 PF04055 Radical SAM superfamily PF552_02390 PF00919 Uncharacterized protein family UPF0004 PF552_02390 PF01938 TRAM domain PF552_02395 PF10145 Phage-related minor tail protein PF552_02395 PF01464 Transglycosylase SLT domain PF552_02395 PF01551 Peptidase family M23 PF552_02405 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain PF552_02405 PF00056 lactate/malate dehydrogenase, NAD binding domain PF552_02425 PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ PF552_02430 PF01066 CDP-alcohol phosphatidyltransferase PF552_02475 PF00441 Acyl-CoA dehydrogenase, C-terminal domain PF552_02475 PF02770 Acyl-CoA dehydrogenase, middle domain PF552_02475 PF02771 Acyl-CoA dehydrogenase, N-terminal domain PF552_02480 PF17932 Tetracyclin repressor-like, C-terminal domain PF552_02480 PF00440 Bacterial regulatory proteins, tetR family PF552_02495 PF01039 Carboxyl transferase domain PF552_02500 PF00441 Acyl-CoA dehydrogenase, C-terminal domain PF552_02500 PF02770 Acyl-CoA dehydrogenase, middle domain PF552_02500 PF02771 Acyl-CoA dehydrogenase, N-terminal domain PF552_02510 PF00289 Biotin carboxylase, N-terminal domain PF552_02510 PF02785 Biotin carboxylase C-terminal domain PF552_02510 PF00364 Biotin-requiring enzyme PF552_02510 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain PF552_02520 PF04386 Stringent starvation protein B PF552_02525 PF00043 Glutathione S-transferase, C-terminal domain PF552_02525 PF13417 Glutathione S-transferase, N-terminal domain PF552_02530 PF00380 Ribosomal protein S9/S16 PF552_02535 PF00572 Ribosomal protein L13 PF552_02540 PF04166 Pyridoxal phosphate biosynthetic protein PdxA PF552_02545 PF00398 Ribosomal RNA adenine dimethylase PF552_02550 PF00149 Calcineurin-like phosphoesterase PF552_02570 PF16360 GTP-binding GTPase Middle Region PF552_02570 PF13167 GTP-binding GTPase N-terminal PF552_02570 PF01926 50S ribosome-binding GTPase PF552_02580 PF13091 PLD-like domain PF552_02585 PF00149 Calcineurin-like phosphoesterase PF552_02585 PF10518 TAT (twin-arginine translocation) pathway signal sequence PF552_02590 PF01389 OmpA-like transmembrane domain PF552_02590 PF00691 OmpA family PF552_02595 PF17152 Periplasmic sensor domain PF552_02595 PF00990 Diguanylate cyclase, GGDEF domain PF552_02630 PF07992 Pyridine nucleotide-disulphide oxidoreductase PF552_02630 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain PF552_02640 PF00753 Metallo-beta-lactamase superfamily PF552_02640 PF04273 Putative phosphatase (DUF442) PF552_02645 PF00561 alpha/beta hydrolase fold PF552_02650 PF00085 Thioredoxin PF552_02655 PF03061 Thioesterase superfamily PF552_02665 PF04461 Protein of unknown function (DUF520) PF552_02675 PF05430 S-adenosyl-L-methionine-dependent methyltransferase PF552_02675 PF01266 FAD dependent oxidoreductase PF552_02685 PF03795 YCII-related domain PF552_02690 PF04279 Intracellular septation protein A PF552_02695 PF02811 PHP domain PF552_02700 PF01062 Bestrophin, RFP-TM, chloride channel PF552_02705 PF04002 RadC-like JAB domain PF552_02710 PF02441 Flavoprotein PF552_02710 PF04127 DNA / pantothenate metabolism flavoprotein PF552_02715 PF07549 SecD/SecF GG Motif PF552_02715 PF02355 Protein export membrane protein PF552_02720 PF07549 SecD/SecF GG Motif PF552_02720 PF13721 SecD export protein N-terminal TM region PF552_02720 PF02355 Protein export membrane protein PF552_02725 PF02699 Preprotein translocase subunit PF552_02730 PF01702 Queuine tRNA-ribosyltransferase PF552_02745 PF02547 Queuosine biosynthesis protein PF552_02755 PF07689 KaiB domain PF552_02755 PF00512 His Kinase A (phospho-acceptor) domain PF552_02755 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PF552_02760 PF03710 Glutamate-ammonia ligase adenylyltransferase PF552_02760 PF08335 GlnD PII-uridylyltransferase PF552_02765 PF01063 Amino-transferase class IV PF552_02780 PF01522 Polysaccharide deacetylase PF552_02785 PF00535 Glycosyl transferase family 2 PF552_02790 PF00534 Glycosyl transferases group 1 PF552_02790 PF13439 Glycosyltransferase Family 4 PF552_02830 PF01336 OB-fold nucleic acid binding domain PF552_02830 PF00152 tRNA synthetases class II (D, K and N) PF552_02830 PF02938 GAD domain PF552_02840 PF00593 TonB dependent receptor PF552_02840 PF07715 TonB-dependent Receptor Plug Domain PF552_02860 PF06146 Phosphate-starvation-inducible E PF552_02865 PF02771 Acyl-CoA dehydrogenase, N-terminal domain PF552_02865 PF02770 Acyl-CoA dehydrogenase, middle domain PF552_02865 PF12806 Acetyl-CoA dehydrogenase C-terminal like PF552_02865 PF00441 Acyl-CoA dehydrogenase, C-terminal domain PF552_02870 PF02771 Acyl-CoA dehydrogenase, N-terminal domain PF552_02870 PF02770 Acyl-CoA dehydrogenase, middle domain PF552_02870 PF12806 Acetyl-CoA dehydrogenase C-terminal like PF552_02870 PF00441 Acyl-CoA dehydrogenase, C-terminal domain PF552_02880 PF00512 His Kinase A (phospho-acceptor) domain PF552_02880 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PF552_02880 PF00672 HAMP domain PF552_02885 PF00072 Response regulator receiver domain PF552_02885 PF00486 Transcriptional regulatory protein, C terminal PF552_02890 PF02696 Uncharacterized ACR, YdiU/UPF0061 family PF552_02905 PF03009 Glycerophosphoryl diester phosphodiesterase family PF552_02910 PF01923 Cobalamin adenosyltransferase PF552_02915 PF00593 TonB dependent receptor PF552_02915 PF07715 TonB-dependent Receptor Plug Domain PF552_02920 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase PF552_02925 PF00291 Pyridoxal-phosphate dependent enzyme PF552_02950 PF00290 Tryptophan synthase alpha chain PF552_02955 PF01039 Carboxyl transferase domain PF552_02960 PF08245 Mur ligase middle domain PF552_02960 PF02875 Mur ligase family, glutamate ligase domain PF552_02975 PF00753 Metallo-beta-lactamase superfamily PF552_02980 PF10417 C-terminal domain of 1-Cys peroxiredoxin PF552_02980 PF00578 AhpC/TSA family PF552_02985 PF02810 SEC-C motif PF552_02985 PF07517 SecA DEAD-like domain PF552_02985 PF01043 SecA preprotein cross-linking domain PF552_02985 PF07516 SecA Wing and Scaffold domain PF552_02995 PF07690 Major Facilitator Superfamily PF552_02995 PF00083 Sugar (and other) transporter PF552_03000 PF03006 Haemolysin-III related PF552_03035 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain PF552_03035 PF00378 Enoyl-CoA hydratase/isomerase PF552_03035 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain PF552_03040 PF02803 Thiolase, C-terminal domain PF552_03040 PF00108 Thiolase, N-terminal domain PF552_03045 PF02311 AraC-like ligand binding domain PF552_03045 PF12833 Helix-turn-helix domain PF552_03050 PF02515 CoA-transferase family III PF552_03055 PF04966 Carbohydrate-selective porin, OprB family PF552_03060 PF01011 PQQ enzyme repeat PF552_03065 PF01077 Nitrite and sulphite reductase 4Fe-4S domain PF552_03065 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain PF552_03075 PF00893 Small Multidrug Resistance protein PF552_03085 PF02803 Thiolase, C-terminal domain PF552_03085 PF00108 Thiolase, N-terminal domain PF552_03095 PF13505 Outer membrane protein beta-barrel domain PF552_03095 PF00691 OmpA family PF552_03105 PF01139 tRNA-splicing ligase RtcB PF552_03110 PF00324 Amino acid permease PF552_03115 PF05175 Methyltransferase small domain PF552_03115 PF08468 Methyltransferase small domain N-terminal PF552_03120 PF00860 Permease family PF552_03125 PF00679 Elongation factor G C-terminus PF552_03125 PF03144 Elongation factor Tu domain 2 PF552_03125 PF00009 Elongation factor Tu GTP binding domain PF552_03130 PF01741 Large-conductance mechanosensitive channel, MscL PF552_03145 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain PF552_03145 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain PF552_03145 PF06827 Zinc finger found in FPG and IleRS PF552_03150 PF02245 Methylpurine-DNA glycosylase (MPG) PF552_03155 PF00593 TonB dependent receptor PF552_03155 PF07715 TonB-dependent Receptor Plug Domain PF552_03160 PF00724 NADH:flavin oxidoreductase / NADH oxidase family PF552_03175 PF13098 Thioredoxin-like domain PF552_03175 PF10411 Disulfide bond isomerase protein N-terminus PF552_03180 PF01571 Aminomethyltransferase folate-binding domain PF552_03190 PF04343 Protein of unknown function, DUF488 PF552_03195 PF03831 PhnA domain PF552_03195 PF08274 PhnA Zinc-Ribbon PF552_03200 PF07411 Domain of unknown function (DUF1508) PF552_03205 PF03129 Anticodon binding domain PF552_03205 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) PF552_03205 PF04073 Aminoacyl-tRNA editing domain PF552_03210 PF00873 AcrB/AcrD/AcrF family PF552_03225 PF00072 Response regulator receiver domain PF552_03230 PF00072 Response regulator receiver domain PF552_03235 PF01584 CheW-like domain PF552_03240 PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term PF552_03240 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain PF552_03245 PF01584 CheW-like domain PF552_03245 PF00072 Response regulator receiver domain PF552_03245 PF01627 Hpt domain PF552_03245 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PF552_03260 PF01546 Peptidase family M20/M25/M40 PF552_03260 PF07687 Peptidase dimerisation domain PF552_03265 PF08085 Entericidin EcnA/B family PF552_03275 PF04304 Protein of unknown function (DUF454) PF552_03280 PF17969 L,D-transpeptidase C-terminal domain PF552_03280 PF03734 L,D-transpeptidase catalytic domain PF552_03320 PF00258 Flavodoxin PF552_03320 PF00667 FAD binding domain PF552_03320 PF00175 Oxidoreductase NAD-binding domain PF552_03330 PF12805 FUSC-like inner membrane protein yccS PF552_03335 PF07690 Major Facilitator Superfamily PF552_03340 PF00881 Nitroreductase family PF552_03355 PF01235 Sodium:alanine symporter family PF552_03360 PF01734 Patatin-like phospholipase PF552_03365 PF13291 ACT domain PF552_03365 PF00291 Pyridoxal-phosphate dependent enzyme PF552_03370 PF05992 SbmA/BacA-like family PF552_03395 PF02934 GatB/GatE catalytic domain PF552_03395 PF02637 GatB domain PF552_03400 PF01425 Amidase PF552_03405 PF02686 Glu-tRNAGln amidotransferase C subunit PF552_03415 PF04085 rod shape-determining protein MreC PF552_03420 PF04093 rod shape-determining protein MreD PF552_03425 PF02545 Maf-like protein PF552_03430 PF00575 S1 RNA binding domain PF552_03430 PF10150 Ribonuclease E/G family PF552_03440 PF03007 Wax ester synthase-like Acyl-CoA acyltransferase domain PF552_03440 PF06974 Protein of unknown function (DUF1298) PF552_03445 PF01507 Phosphoadenosine phosphosulfate reductase family PF552_03460 PF02525 Flavodoxin-like fold PF552_03480 PF02673 Bacitracin resistance protein BacA PF552_03485 PF12833 Helix-turn-helix domain PF552_03485 PF06719 AraC-type transcriptional regulator N-terminus PF552_03490 PF00107 Zinc-binding dehydrogenase PF552_03490 PF08240 Alcohol dehydrogenase GroES-like domain PF552_03495 PF01965 DJ-1/PfpI family PF552_03530 PF00324 Amino acid permease PF552_03535 PF04303 PrpF protein PF552_03540 PF00348 Polyprenyl synthetase PF552_03545 PF04237 YjbR PF552_03550 PF01145 SPFH domain / Band 7 family PF552_03560 PF01734 Patatin-like phospholipase PF552_03580 PF00884 Sulfatase PF552_03580 PF08019 Phosphoethanolamine transferase EptA/EptB PF552_03585 PF00072 Response regulator receiver domain PF552_03585 PF00486 Transcriptional regulatory protein, C terminal PF552_03590 PF08521 Two-component sensor kinase N-terminal PF552_03590 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PF552_03590 PF00512 His Kinase A (phospho-acceptor) domain PF552_03605 PF00909 Ammonium Transporter Family PF552_03610 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family PF552_03610 PF03466 LysR substrate binding domain PF552_03630 PF08264 Anticodon-binding domain of tRNA PF552_03630 PF00133 tRNA synthetases class I (I, L, M and V) PF552_03630 PF10458 Valyl tRNA synthetase tRNA binding arm PF552_03650 PF01906 Putative heavy-metal-binding PF552_03655 PF01906 Putative heavy-metal-binding PF552_03660 PF02321 Outer membrane efflux protein PF552_03665 PF00873 AcrB/AcrD/AcrF family PF552_03670 PF00529 HlyD membrane-fusion protein of T1SS PF552_03670 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion PF552_03685 PF00348 Polyprenyl synthetase PF552_03695 PF00829 Ribosomal prokaryotic L21 protein PF552_03700 PF01016 Ribosomal L27 protein PF552_03705 PF03548 Outer membrane lipoprotein carrier protein LolA PF552_03715 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) PF552_03715 PF02403 Seryl-tRNA synthetase N-terminal domain PF552_03720 PF14824 Sirohaem biosynthesis protein central PF552_03720 PF10414 Sirohaem synthase dimerisation region PF552_03720 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases PF552_03725 PF00588 SpoU rRNA Methylase family PF552_03730 PF01638 HxlR-like helix-turn-helix PF552_03735 PF03358 NADPH-dependent FMN reductase PF552_03740 PF13520 Amino acid permease PF552_03745 PF00465 Iron-containing alcohol dehydrogenase PF552_03755 PF03099 Biotin/lipoate A/B protein ligase family PF552_03760 PF04359 Protein of unknown function (DUF493) PF552_03765 PF04546 Sigma-70, non-essential region PF552_03765 PF03979 Sigma-70 factor, region 1.1 PF552_03765 PF00140 Sigma-70 factor, region 1.2 PF552_03765 PF04542 Sigma-70 region 2 PF552_03765 PF04539 Sigma-70 region 3 PF552_03765 PF04545 Sigma-70, region 4 PF552_03780 PF17773 UPF0176 acylphosphatase like domain PF552_03780 PF00581 Rhodanese-like domain PF552_03790 PF00285 Citrate synthase, C-terminal domain PF552_03795 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit PF552_03800 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit PF552_03805 PF00890 FAD binding domain PF552_03805 PF02910 Fumarate reductase flavoprotein C-term PF552_03810 PF13085 2Fe-2S iron-sulfur cluster binding domain PF552_03825 PF16078 2-oxoglutarate dehydrogenase N-terminus PF552_03825 PF00676 Dehydrogenase E1 component PF552_03825 PF16870 2-oxoglutarate dehydrogenase C-terminal PF552_03825 PF02779 Transketolase, pyrimidine binding domain PF552_03830 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) PF552_03830 PF02817 e3 binding domain PF552_03830 PF00364 Biotin-requiring enzyme PF552_03835 PF07992 Pyridine nucleotide-disulphide oxidoreductase PF552_03835 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain PF552_03840 PF08442 ATP-grasp domain PF552_03840 PF00549 CoA-ligase PF552_03845 PF02629 CoA binding domain PF552_03845 PF00549 CoA-ligase PF552_03850 PF00579 tRNA synthetases class I (W and Y) PF552_03855 PF05661 Protein of unknown function (DUF808) PF552_03860 PF04228 Putative neutral zinc metallopeptidase PF552_03865 PF00999 Sodium/hydrogen exchanger family PF552_03880 PF09587 Bacterial capsule synthesis protein PGA_cap PF552_03890 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain PF552_03895 PF00582 Universal stress protein family PF552_03900 PF00132 Bacterial transferase hexapeptide (six repeats) PF552_03905 PF01272 Transcription elongation factor, GreA/GreB, C-term PF552_03905 PF03449 Transcription elongation factor, N-terminal PF552_03910 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain PF552_03910 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain PF552_03910 PF02142 MGS-like domain PF552_03915 PF00117 Glutamine amidotransferase class-I PF552_03915 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain PF552_03930 PF01985 CRS1 / YhbY (CRM) domain PF552_03935 PF01728 FtsJ-like methyltransferase PF552_03940 PF01434 Peptidase family M41 PF552_03940 PF06480 FtsH Extracellular PF552_03940 PF00004 ATPase family associated with various cellular activities (AAA) PF552_03940 PF17862 AAA+ lid domain PF552_03945 PF00809 Pterin binding enzyme PF552_03965 PF09423 PhoD-like phosphatase PF552_03965 PF16655 PhoD-like phosphatase, N-terminal domain PF552_03980 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain PF552_03980 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain PF552_03995 PF00083 Sugar (and other) transporter PF552_04000 PF02782 FGGY family of carbohydrate kinases, C-terminal domain PF552_04000 PF00370 FGGY family of carbohydrate kinases, N-terminal domain PF552_04005 PF01266 FAD dependent oxidoreductase PF552_04005 PF16901 C-terminal domain of alpha-glycerophosphate oxidase PF552_04010 PF00821 Phosphoenolpyruvate carboxykinase C-terminal P-loop domain PF552_04010 PF17297 Phosphoenolpyruvate carboxykinase N-terminal domain PF552_04015 PF00781 Diacylglycerol kinase catalytic domain PF552_04020 PF00149 Calcineurin-like phosphoesterase PF552_04030 PF00166 Chaperonin 10 Kd subunit PF552_04035 PF00118 TCP-1/cpn60 chaperonin family PF552_04040 PF01219 Prokaryotic diacylglycerol kinase PF552_04045 PF00753 Metallo-beta-lactamase superfamily PF552_04050 PF03009 Glycerophosphoryl diester phosphodiesterase family PF552_04055 PF00873 AcrB/AcrD/AcrF family PF552_04065 PF01435 Peptidase family M48 PF552_04070 PF01464 Transglycosylase SLT domain PF552_04075 PF01171 PP-loop family PF552_04085 PF00497 Bacterial extracellular solute-binding proteins, family 3 PF552_04085 PF01464 Transglycosylase SLT domain PF552_04090 PF01272 Transcription elongation factor, GreA/GreB, C-term PF552_04090 PF03449 Transcription elongation factor, N-terminal PF552_04105 PF00550 Phosphopantetheine attachment site PF552_04105 PF00501 AMP-binding enzyme PF552_04105 PF00975 Thioesterase domain PF552_04105 PF13193 AMP-binding enzyme C-terminal domain PF552_04105 PF00668 Condensation domain PF552_04130 PF09857 Putative toxin of bacterial toxin-antitoxin pair PF552_04155 PF00881 Nitroreductase family PF552_04170 PF02595 Glycerate kinase family PF552_04175 PF00384 Molybdopterin oxidoreductase PF552_04180 PF02634 FdhD/NarQ family PF552_04185 PF06803 Protein of unknown function (DUF1232) PF552_04190 PF11890 Domain of unknown function (DUF3410) PF552_04190 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain PF552_04190 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain PF552_04195 PF00152 tRNA synthetases class II (D, K and N) PF552_04205 PF18073 Rubredoxin metal binding domain PF552_04210 PF00324 Amino acid permease PF552_04220 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain PF552_04220 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain PF552_04225 PF01678 Diaminopimelate epimerase PF552_04230 PF00561 alpha/beta hydrolase fold PF552_04235 PF01810 LysE type translocator PF552_04240 PF00589 Phage integrase family PF552_04240 PF02899 Phage integrase, N-terminal SAM-like domain PF552_04245 PF01012 Electron transfer flavoprotein domain PF552_04250 PF01012 Electron transfer flavoprotein domain PF552_04250 PF00766 Electron transfer flavoprotein FAD-binding domain PF552_04255 PF03989 DNA gyrase C-terminal domain, beta-propeller PF552_04255 PF00521 DNA gyrase/topoisomerase IV, subunit A PF552_04270 PF00535 Glycosyl transferase family 2 PF552_04290 PF13533 Biotin-lipoyl like PF552_04300 PF00266 Aminotransferase class-V PF552_04315 PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 PF552_04325 PF02687 FtsX-like permease family PF552_04325 PF12704 MacB-like periplasmic core domain PF552_04330 PF00005 ABC transporter PF552_04335 PF03772 Competence protein PF552_04335 PF13567 Domain of unknown function (DUF4131) PF552_04335 PF00753 Metallo-beta-lactamase superfamily PF552_04345 PF06965 Na+/H+ antiporter 1 PF552_04345 PF01343 Peptidase family S49 PF552_04350 PF12697 Alpha/beta hydrolase family PF552_04355 PF00551 Formyl transferase PF552_04360 PF00586 AIR synthase related protein, N-terminal domain PF552_04360 PF02769 AIR synthase related protein, C-terminal domain PF552_04365 PF01594 AI-2E family transporter PF552_04370 PF00308 Bacterial dnaA protein PF552_04370 PF11638 DnaA N-terminal domain PF552_04370 PF08299 Bacterial dnaA protein helix-turn-helix PF552_04400 PF00588 SpoU rRNA Methylase family PF552_04400 PF08032 RNA 2'-O ribose methyltransferase substrate binding PF552_04405 PF00316 Fructose-1-6-bisphosphatase, N-terminal domain PF552_04415 PF00691 OmpA family PF552_04420 PF07676 WD40-like Beta Propeller Repeat PF552_04420 PF04052 TolB amino-terminal domain PF552_04430 PF02472 Biopolymer transport protein ExbD/TolR PF552_04435 PF01618 MotA/TolQ/ExbB proton channel family PF552_04440 PF03061 Thioesterase superfamily PF552_04445 PF07687 Peptidase dimerisation domain PF552_04445 PF01546 Peptidase family M20/M25/M40 PF552_04450 PF17864 RuvB AAA lid domain PF552_04450 PF05491 RuvB C-terminal winged helix domain PF552_04450 PF05496 Holliday junction DNA helicase RuvB P-loop domain PF552_04455 PF01330 RuvA N terminal domain PF552_04455 PF07499 RuvA, C-terminal domain PF552_04460 PF01966 HD domain PF552_04465 PF02769 AIR synthase related protein, C-terminal domain PF552_04465 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain PF552_04465 PF18076 Formylglycinamide ribonucleotide amidotransferase N-terminal PF552_04470 PF07690 Major Facilitator Superfamily PF552_04480 PF01784 NIF3 (NGG1p interacting factor 3) PF552_04485 PF00378 Enoyl-CoA hydratase/isomerase PF552_04490 PF01467 Cytidylyltransferase-like PF552_04490 PF00293 NUDIX domain PF552_04500 PF00578 AhpC/TSA family PF552_04515 PF06508 Queuosine biosynthesis protein QueC PF552_04525 PF00132 Bacterial transferase hexapeptide (six repeats) PF552_04525 PF14602 Hexapeptide repeat of succinyl-transferase PF552_04525 PF14805 Tetrahydrodipicolinate N-succinyltransferase N-terminal PF552_04535 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family PF552_04535 PF03466 LysR substrate binding domain PF552_04540 PF00005 ABC transporter PF552_04540 PF12857 TOBE-like domain PF552_04545 PF00528 Binding-protein-dependent transport system inner membrane component PF552_04550 PF00528 Binding-protein-dependent transport system inner membrane component PF552_04565 PF01063 Amino-transferase class IV PF552_04570 PF02618 YceG-like family PF552_04575 PF02223 Thymidylate kinase PF552_04585 PF00890 FAD binding domain PF552_04585 PF02910 Fumarate reductase flavoprotein C-term PF552_04590 PF13180 PDZ domain PF552_04600 PF13302 Acetyltransferase (GNAT) domain PF552_04605 PF00679 Elongation factor G C-terminus PF552_04605 PF00009 Elongation factor Tu GTP binding domain PF552_04605 PF03144 Elongation factor Tu domain 2 PF552_04605 PF06421 GTP-binding protein LepA C-terminus PF552_04610 PF10502 Signal peptidase, peptidase S26 PF552_04620 PF14622 Ribonuclease-III-like PF552_04620 PF00035 Double-stranded RNA binding motif PF552_04625 PF01926 50S ribosome-binding GTPase PF552_04625 PF07650 KH domain PF552_04635 PF11967 Recombination protein O N terminal PF552_04635 PF02565 Recombination protein O C terminal PF552_04640 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ PF552_04645 PF06175 tRNA-(MS[2]IO[6]A)-hydroxylase (MiaE) PF552_04650 PF00106 short chain dehydrogenase PF552_04680 PF00012 Hsp70 protein PF552_04690 PF00155 Aminotransferase class I and II PF552_04700 PF17151 Periplasmic sensor domain PF552_04700 PF00990 Diguanylate cyclase, GGDEF domain PF552_04710 PF17757 UvrB interaction domain PF552_04710 PF12344 Ultra-violet resistance protein B PF552_04710 PF04851 Type III restriction enzyme, res subunit PF552_04710 PF00271 Helicase conserved C-terminal domain PF552_04710 PF02151 UvrB/uvrC motif PF552_04720 PF00892 EamA-like transporter family PF552_04725 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain PF552_04725 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain PF552_04740 PF01018 GTP1/OBG PF552_04740 PF01926 50S ribosome-binding GTPase PF552_04745 PF00696 Amino acid kinase family PF552_04745 PF01472 PUA domain PF552_04755 PF07759 Protein of unknown function (DUF1615) PF552_04760 PF01207 Dihydrouridine synthase (Dus) PF552_04765 PF03060 Nitronate monooxygenase PF552_04775 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase PF552_04780 PF07992 Pyridine nucleotide-disulphide oxidoreductase PF552_04785 PF00768 D-alanyl-D-alanine carboxypeptidase PF552_04785 PF07943 Penicillin-binding protein 5, C-terminal domain PF552_04795 PF03971 Monomeric isocitrate dehydrogenase PF552_04800 PF00849 RNA pseudouridylate synthase PF552_04895 PF03796 DnaB-like helicase C terminal domain PF552_04895 PF00772 DnaB-like helicase N terminal domain PF552_05000 PF04860 Phage portal protein PF552_05135 PF00589 Phage integrase family PF552_05135 PF13356 Arm DNA-binding domain PF552_05140 PF00180 Isocitrate/isopropylmalate dehydrogenase PF552_05160 PF06779 Uncharacterised MFS-type transporter YbfB PF552_05165 PF03466 LysR substrate binding domain PF552_05165 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family PF552_05170 PF00375 Sodium:dicarboxylate symporter family PF552_05175 PF02567 Phenazine biosynthesis-like protein PF552_05180 PF00675 Insulinase (Peptidase family M16) PF552_05180 PF05193 Peptidase M16 inactive domain PF552_05205 PF02581 Thiamine monophosphate synthase PF552_05210 PF00202 Aminotransferase class-III PF552_05220 PF00849 RNA pseudouridylate synthase PF552_05225 PF12137 RNA polymerase recycling family C-terminal PF552_05225 PF18337 RapA N-terminal Tudor like domain PF552_05225 PF18339 RapA N-terminal Tudor like domain 1 PF552_05225 PF00176 SNF2 family N-terminal domain PF552_05225 PF00271 Helicase conserved C-terminal domain PF552_05235 PF00440 Bacterial regulatory proteins, tetR family PF552_05240 PF00970 Oxidoreductase FAD-binding domain PF552_05240 PF00111 2Fe-2S iron-sulfur cluster binding domain PF552_05240 PF00175 Oxidoreductase NAD-binding domain PF552_05245 PF00487 Fatty acid desaturase PF552_05255 PF00440 Bacterial regulatory proteins, tetR family PF552_05255 PF17754 MftR C-terminal domain PF552_05265 PF00202 Aminotransferase class-III PF552_05270 PF00282 Pyridoxal-dependent decarboxylase conserved domain PF552_05275 PF00171 Aldehyde dehydrogenase family PF552_05280 PF01037 Lrp/AsnC ligand binding domain PF552_05285 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain PF552_05285 PF00205 Thiamine pyrophosphate enzyme, central domain PF552_05285 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain PF552_05290 PF00324 Amino acid permease PF552_05295 PF12849 PBP superfamily domain PF552_05300 PF00528 Binding-protein-dependent transport system inner membrane component PF552_05305 PF00528 Binding-protein-dependent transport system inner membrane component PF552_05310 PF00005 ABC transporter PF552_05315 PF01343 Peptidase family S49 PF552_05315 PF08496 Peptidase family S49 N-terminal PF552_05330 PF08328 Adenylosuccinate lyase C-terminal PF552_05330 PF00206 Lyase PF552_05335 PF04356 Protein of unknown function (DUF489) PF552_05345 PF13344 Haloacid dehalogenase-like hydrolase PF552_05345 PF00293 NUDIX domain PF552_05350 PF00132 Bacterial transferase hexapeptide (six repeats) PF552_05355 PF07943 Penicillin-binding protein 5, C-terminal domain PF552_05355 PF00768 D-alanyl-D-alanine carboxypeptidase PF552_05370 PF01975 Survival protein SurE PF552_05375 PF01476 LysM domain PF552_05375 PF01551 Peptidase family M23 PF552_05380 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family PF552_05380 PF03466 LysR substrate binding domain PF552_05385 PF05362 Lon protease (S16) C-terminal proteolytic domain PF552_05385 PF13654 AAA domain PF552_05390 PF07690 Major Facilitator Superfamily PF552_05395 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily PF552_05400 PF13593 SBF-like CPA transporter family (DUF4137) PF552_05405 PF01197 Ribosomal protein L31 PF552_05410 PF00563 EAL domain PF552_05410 PF12792 CSS motif domain associated with EAL PF552_05420 PF04055 Radical SAM superfamily PF552_05425 PF08207 Elongation factor P (EF-P) KOW-like domain PF552_05425 PF09285 Elongation factor P, C-terminal PF552_05425 PF01132 Elongation factor P (EF-P) OB domain PF552_05430 PF02554 Carbon starvation protein CstA PF552_05430 PF13722 5TM C-terminal transporter carbon starvation CstA PF552_05435 PF04328 Selenoprotein, putative PF552_05475 PF00857 Isochorismatase family PF552_05480 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family PF552_05480 PF03466 LysR substrate binding domain PF552_05490 PF00743 Flavin-binding monooxygenase-like PF552_05495 PF00561 alpha/beta hydrolase fold PF552_05505 PF01370 NAD dependent epimerase/dehydratase family PF552_05510 PF12833 Helix-turn-helix domain PF552_05510 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term PF552_05515 PF16884 N-terminal domain of oxidoreductase PF552_05515 PF00107 Zinc-binding dehydrogenase PF552_05520 PF00106 short chain dehydrogenase PF552_05525 PF12852 Cupin PF552_05525 PF12833 Helix-turn-helix domain PF552_05545 PF02678 Pirin PF552_05545 PF17954 Quercetinase C-terminal cupin domain PF552_05550 PF00291 Pyridoxal-phosphate dependent enzyme PF552_05555 PF08348 YheO-like PAS domain PF552_05555 PF13309 HTH domain PF552_05565 PF13193 AMP-binding enzyme C-terminal domain PF552_05565 PF00668 Condensation domain PF552_05565 PF00550 Phosphopantetheine attachment site PF552_05565 PF00501 AMP-binding enzyme PF552_05570 PF00501 AMP-binding enzyme PF552_05570 PF00668 Condensation domain PF552_05570 PF00975 Thioesterase domain PF552_05570 PF00550 Phosphopantetheine attachment site PF552_05570 PF13193 AMP-binding enzyme C-terminal domain PF552_05580 PF01032 FecCD transport family PF552_05585 PF01032 FecCD transport family PF552_05590 PF00005 ABC transporter PF552_05595 PF01497 Periplasmic binding protein PF552_05600 PF07715 TonB-dependent Receptor Plug Domain PF552_05600 PF00593 TonB dependent receptor PF552_05605 PF13434 L-lysine 6-monooxygenase (NADPH-requiring) PF552_05610 PF00501 AMP-binding enzyme PF552_05610 PF00668 Condensation domain PF552_05610 PF00550 Phosphopantetheine attachment site PF552_05615 PF00501 AMP-binding enzyme PF552_05615 PF13193 AMP-binding enzyme C-terminal domain PF552_05620 PF00857 Isochorismatase family PF552_05620 PF00550 Phosphopantetheine attachment site PF552_05625 PF00282 Pyridoxal-dependent decarboxylase conserved domain PF552_05635 PF00005 ABC transporter PF552_05640 PF00005 ABC transporter PF552_05645 PF00975 Thioesterase domain PF552_05650 PF01648 4'-phosphopantetheinyl transferase superfamily PF552_05650 PF17837 4'-phosphopantetheinyl transferase N-terminal domain PF552_05655 PF00425 chorismate binding enzyme PF552_05665 PF01208 Uroporphyrinogen decarboxylase (URO-D) PF552_05670 PF05675 Protein of unknown function (DUF817) PF552_05685 PF00144 Beta-lactamase PF552_05690 PF01227 GTP cyclohydrolase I PF552_05695 PF01799 [2Fe-2S] binding domain PF552_05695 PF00111 2Fe-2S iron-sulfur cluster binding domain PF552_05700 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain PF552_05700 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase PF552_05715 PF00218 Indole-3-glycerol phosphate synthase PF552_05720 PF02885 Glycosyl transferase family, helical bundle domain PF552_05720 PF00591 Glycosyl transferase family, a/b domain PF552_05725 PF00593 TonB dependent receptor PF552_05725 PF07715 TonB-dependent Receptor Plug Domain PF552_05730 PF01433 Peptidase family M1 domain PF552_05730 PF11838 ERAP1-like C-terminal domain PF552_05735 PF00117 Glutamine amidotransferase class-I PF552_05745 PF00854 POT family PF552_05750 PF00120 Glutamine synthetase, catalytic domain PF552_05750 PF03951 Glutamine synthetase, beta-Grasp domain PF552_05755 PF04345 Chorismate lyase PF552_05760 PF01040 UbiA prenyltransferase family PF552_05795 PF02777 Iron/manganese superoxide dismutases, C-terminal domain PF552_05795 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain PF552_05800 PF01784 NIF3 (NGG1p interacting factor 3) PF552_05805 PF13180 PDZ domain PF552_05810 PF01743 Poly A polymerase head domain PF552_05810 PF12627 Probable RNA and SrmB- binding site of polymerase A PF552_05815 PF00390 Malic enzyme, N-terminal domain PF552_05815 PF03949 Malic enzyme, NAD binding domain PF552_05815 PF01515 Phosphate acetyl/butaryl transferase PF552_05820 PF03707 Bacterial signalling protein N terminal repeat PF552_05820 PF00990 Diguanylate cyclase, GGDEF domain PF552_05820 PF00563 EAL domain PF552_05825 PF04452 RNA methyltransferase PF552_05830 PF02219 Methylenetetrahydrofolate reductase PF552_05835 PF00670 S-adenosyl-L-homocysteine hydrolase, NAD binding domain PF552_05835 PF05221 S-adenosyl-L-homocysteine hydrolase PF552_05850 PF09317 Domain of unknown function (DUF1974) PF552_05850 PF02771 Acyl-CoA dehydrogenase, N-terminal domain PF552_05850 PF00441 Acyl-CoA dehydrogenase, C-terminal domain PF552_05855 PF04055 Radical SAM superfamily PF552_05860 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain PF552_05860 PF07992 Pyridine nucleotide-disulphide oxidoreductase PF552_05870 PF07690 Major Facilitator Superfamily PF552_05880 PF00557 Metallopeptidase family M24 PF552_05885 PF00318 Ribosomal protein S2 PF552_05890 PF00889 Elongation factor TS PF552_05900 PF12833 Helix-turn-helix domain PF552_05920 PF03330 Lytic transglycolase PF552_05920 PF05036 Sporulation related domain PF552_05925 PF13406 Transglycosylase SLT domain PF552_05930 PF01098 Cell cycle protein PF552_05940 PF14489 QueF-like protein PF552_05940 PF14819 Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term PF552_05945 PF01061 ABC-2 type transporter PF552_05950 PF00005 ABC transporter PF552_05980 PF00464 Serine hydroxymethyltransferase PF552_05985 PF02321 Outer membrane efflux protein PF552_05990 PF00873 AcrB/AcrD/AcrF family PF552_05995 PF13533 Biotin-lipoyl like PF552_06000 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family PF552_06000 PF03466 LysR substrate binding domain PF552_06005 PF00497 Bacterial extracellular solute-binding proteins, family 3 PF552_06010 PF00528 Binding-protein-dependent transport system inner membrane component PF552_06015 PF00528 Binding-protein-dependent transport system inner membrane component PF552_06020 PF00005 ABC transporter PF552_06025 PF00893 Small Multidrug Resistance protein PF552_06030 PF00037 4Fe-4S binding domain PF552_06035 PF16325 Peptidase family U32 C-terminal domain PF552_06035 PF01136 Peptidase family U32 PF552_06040 PF00155 Aminotransferase class I and II PF552_06040 PF00392 Bacterial regulatory proteins, gntR family PF552_06045 PF02567 Phenazine biosynthesis-like protein PF552_06050 PF00175 Oxidoreductase NAD-binding domain PF552_06050 PF00970 Oxidoreductase FAD-binding domain PF552_06055 PF18389 TrmO C-terminal domain PF552_06055 PF01980 tRNA-methyltransferase O PF552_06065 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain PF552_06065 PF00437 Type II/IV secretion system protein PF552_06075 PF00072 Response regulator receiver domain PF552_06075 PF00486 Transcriptional regulatory protein, C terminal PF552_06080 PF08521 Two-component sensor kinase N-terminal PF552_06080 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PF552_06080 PF00512 His Kinase A (phospho-acceptor) domain PF552_06090 PF00293 NUDIX domain PF552_06100 PF00905 Penicillin binding protein transpeptidase domain PF552_06100 PF14814 Bifunctional transglycosylase second domain PF552_06100 PF00912 Transglycosylase PF552_06105 PF01513 ATP-NAD kinase PF552_06110 PF07023 Protein of unknown function (DUF1315) PF552_06115 PF02885 Glycosyl transferase family, helical bundle domain PF552_06115 PF00591 Glycosyl transferase family, a/b domain PF552_06120 PF00375 Sodium:dicarboxylate symporter family PF552_06125 PF02771 Acyl-CoA dehydrogenase, N-terminal domain PF552_06125 PF02770 Acyl-CoA dehydrogenase, middle domain PF552_06125 PF00441 Acyl-CoA dehydrogenase, C-terminal domain PF552_06130 PF00756 Putative esterase PF552_06135 PF00800 Prephenate dehydratase PF552_06135 PF01817 Chorismate mutase type II PF552_06135 PF01842 ACT domain PF552_06140 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) PF552_06155 PF07687 Peptidase dimerisation domain PF552_06155 PF01546 Peptidase family M20/M25/M40 PF552_06160 PF05189 RNA 3'-terminal phosphate cyclase (RTC), insert domain PF552_06160 PF01137 RNA 3'-terminal phosphate cyclase PF552_06175 PF01139 tRNA-splicing ligase RtcB PF552_06180 PF00753 Metallo-beta-lactamase superfamily PF552_06185 PF06956 Regulator of RNA terminal phosphate cyclase PF552_06185 PF00158 Sigma-54 interaction domain PF552_06195 PF03883 Peroxide stress protein YaaA PF552_06205 PF05690 Thiazole biosynthesis protein ThiG PF552_06215 PF04241 Protein of unknown function (DUF423) PF552_06220 PF04545 Sigma-70, region 4 PF552_06220 PF04542 Sigma-70 region 2 PF552_06220 PF00140 Sigma-70 factor, region 1.2 PF552_06235 PF00313 'Cold-shock' DNA-binding domain PF552_06240 PF00270 DEAD/DEAH box helicase PF552_06240 PF00271 Helicase conserved C-terminal domain PF552_06250 PF00881 Nitroreductase family PF552_06255 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus PF552_06255 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus PF552_06275 PF01180 Dihydroorotate dehydrogenase PF552_06280 PF02674 Colicin V production protein PF552_06285 PF00156 Phosphoribosyl transferase domain PF552_06300 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain PF552_06300 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain PF552_06305 PF01435 Peptidase family M48 PF552_06310 PF09424 Yqey-like protein PF552_06315 PF01165 Ribosomal protein S21 PF552_06320 PF00814 Glycoprotease family PF552_06340 PF03793 PASTA domain PF552_06340 PF00069 Protein kinase domain PF552_06365 PF03466 LysR substrate binding domain PF552_06365 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family PF552_06370 PF00202 Aminotransferase class-III PF552_06375 PF00171 Aldehyde dehydrogenase family PF552_06380 PF00324 Amino acid permease PF552_06410 PF04076 Bacterial OB fold (BOF) protein PF552_06435 PF00561 alpha/beta hydrolase fold PF552_06440 PF03616 Sodium/glutamate symporter PF552_06450 PF00392 Bacterial regulatory proteins, gntR family PF552_06450 PF07729 FCD domain PF552_06460 PF00083 Sugar (and other) transporter PF552_06460 PF08946 Osmosensory transporter coiled coil PF552_06490 PF04403 Paraquat-inducible protein A PF552_06495 PF02470 MlaD protein PF552_06505 PF01177 Asp/Glu/Hydantoin racemase PF552_06510 PF00892 EamA-like transporter family PF552_06515 PF07995 Glucose / Sorbosone dehydrogenase PF552_06535 PF00375 Sodium:dicarboxylate symporter family PF552_06545 PF00753 Metallo-beta-lactamase superfamily PF552_06545 PF16123 Hydroxyacylglutathione hydrolase C-terminus PF552_06550 PF00528 Binding-protein-dependent transport system inner membrane component PF552_06555 PF00005 ABC transporter PF552_06555 PF09383 NIL domain PF552_06560 PF03180 NLPA lipoprotein PF552_06565 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain PF552_06565 PF02843 Phosphoribosylglycinamide synthetase, C domain PF552_06565 PF02844 Phosphoribosylglycinamide synthetase, N domain PF552_06570 PF01808 AICARFT/IMPCHase bienzyme PF552_06570 PF02142 MGS-like domain PF552_06575 PF02954 Bacterial regulatory protein, Fis family PF552_06595 PF01134 Glucose inhibited division protein A PF552_06595 PF13932 GidA associated domain PF552_06605 PF14403 Circularly permuted ATP-grasp type 2 PF552_06615 PF01841 Transglutaminase-like superfamily PF552_06615 PF08379 Bacterial transglutaminase-like N-terminal region PF552_06625 PF01168 Alanine racemase, N-terminal domain PF552_06625 PF00842 Alanine racemase, C-terminal domain PF552_06630 PF03796 DnaB-like helicase C terminal domain PF552_06630 PF00772 DnaB-like helicase N terminal domain PF552_06635 PF03948 Ribosomal protein L9, C-terminal domain PF552_06635 PF01281 Ribosomal protein L9, N-terminal domain PF552_06640 PF01084 Ribosomal protein S18 PF552_06645 PF01250 Ribosomal protein S6 PF552_06650 PF01040 UbiA prenyltransferase family PF552_06655 PF03626 Prokaryotic Cytochrome C oxidase subunit IV PF552_06660 PF00510 Cytochrome c oxidase subunit III PF552_06665 PF00115 Cytochrome C and Quinol oxidase polypeptide I PF552_06670 PF00116 Cytochrome C oxidase subunit II, periplasmic domain PF552_06670 PF06481 COX Aromatic Rich Motif PF552_06680 PF00391 PEP-utilising enzyme, mobile domain PF552_06680 PF02896 PEP-utilising enzyme, TIM barrel domain PF552_06680 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain PF552_06685 PF03618 Kinase/pyrophosphorylase PF552_06695 PF01522 Polysaccharide deacetylase PF552_06695 PF14883 Hypothetical glycosyl hydrolase family 13 PF552_06700 PF00535 Glycosyl transferase family 2 PF552_06705 PF13994 PgaD-like protein PF552_06715 PF00296 Luciferase-like monooxygenase PF552_06730 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family PF552_06730 PF03466 LysR substrate binding domain PF552_06740 PF03462 PCRF domain PF552_06740 PF00472 RF-1 domain PF552_06745 PF17827 PrmC N-terminal domain PF552_06745 PF13847 Methyltransferase domain PF552_06750 PF00528 Binding-protein-dependent transport system inner membrane component PF552_06755 PF09084 NMT1/THI5 like PF552_06760 PF12833 Helix-turn-helix domain PF552_06765 PF00106 short chain dehydrogenase PF552_06770 PF02770 Acyl-CoA dehydrogenase, middle domain PF552_06770 PF00441 Acyl-CoA dehydrogenase, C-terminal domain PF552_06770 PF02771 Acyl-CoA dehydrogenase, N-terminal domain PF552_06775 PF00501 AMP-binding enzyme PF552_06775 PF13193 AMP-binding enzyme C-terminal domain PF552_06780 PF01613 Flavin reductase like domain PF552_06785 PF00899 ThiF family PF552_06790 PF03109 ABC1 family PF552_06795 PF02152 Dihydroneopterin aldolase PF552_06805 PF03814 Potassium-transporting ATPase A subunit PF552_06815 PF02669 K+-transporting ATPase, c chain PF552_06825 PF00072 Response regulator receiver domain PF552_06825 PF00486 Transcriptional regulatory protein, C terminal PF552_06830 PF00120 Glutamine synthetase, catalytic domain PF552_06840 PF03232 Ubiquinone biosynthesis protein COQ7 PF552_06845 PF07690 Major Facilitator Superfamily PF552_06850 PF07244 Surface antigen variable number repeat PF552_06850 PF17243 POTRA domain TamA domain 1 PF552_06850 PF01103 Surface antigen PF552_06865 PF00330 Aconitase family (aconitate hydratase) PF552_06865 PF11791 Aconitate B N-terminal domain PF552_06865 PF06434 Aconitate hydratase 2 N-terminus PF552_06875 PF00027 Cyclic nucleotide-binding domain PF552_06875 PF00520 Ion transport protein PF552_06880 PF07690 Major Facilitator Superfamily PF552_06895 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family PF552_06895 PF03466 LysR substrate binding domain PF552_06900 PF04284 Protein of unknown function (DUF441) PF552_06910 PF00849 RNA pseudouridylate synthase PF552_06910 PF01479 S4 domain PF552_06925 PF01479 S4 domain PF552_06925 PF00849 RNA pseudouridylate synthase PF552_06930 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE PF552_06935 PF01119 DNA mismatch repair protein, C-terminal domain PF552_06935 PF08676 MutL C terminal dimerisation domain PF552_06945 PF17209 Hfq protein PF552_06955 PF00881 Nitroreductase family PF552_06965 PF00149 Calcineurin-like phosphoesterase PF552_06970 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD PF552_06975 PF00749 tRNA synthetases class I (E and Q), catalytic domain PF552_06975 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain PF552_06980 PF00117 Glutamine amidotransferase class-I PF552_06980 PF00958 GMP synthase C terminal domain PF552_06980 PF02540 NAD synthase PF552_06985 PF05985 Ethanolamine ammonia-lyase light chain (EutC) PF552_06990 PF06751 Ethanolamine ammonia lyase large subunit (EutB) PF552_06995 PF13520 Amino acid permease PF552_07000 PF00171 Aldehyde dehydrogenase family PF552_07015 PF00465 Iron-containing alcohol dehydrogenase PF552_07020 PF14493 Helix-turn-helix domain PF552_07020 PF05970 PIF1-like helicase PF552_07030 PF06445 GyrI-like small molecule binding domain PF552_07035 PF02110 Hydroxyethylthiazole kinase family PF552_07050 PF11940 Domain of unknown function (DUF3458) Ig-like fold PF552_07050 PF17432 Domain of unknown function (DUF3458_C) ARM repeats PF552_07050 PF01433 Peptidase family M1 domain PF552_07070 PF01817 Chorismate mutase type II PF552_07075 PF01037 Lrp/AsnC ligand binding domain PF552_07090 PF00440 Bacterial regulatory proteins, tetR family PF552_07095 PF07715 TonB-dependent Receptor Plug Domain PF552_07095 PF00593 TonB dependent receptor PF552_07100 PF00924 Mechanosensitive ion channel PF552_07130 PF07715 TonB-dependent Receptor Plug Domain PF552_07130 PF00593 TonB dependent receptor PF552_07150 PF00005 ABC transporter PF552_07150 PF12848 ABC transporter PF552_07155 PF00582 Universal stress protein family PF552_07180 PF00690 Cation transporter/ATPase, N-terminus PF552_07180 PF00689 Cation transporting ATPase, C-terminus PF552_07185 PF02308 MgtC family PF552_07190 PF03594 Benzoate membrane transport protein PF552_07195 PF01037 Lrp/AsnC ligand binding domain PF552_07200 PF01810 LysE type translocator PF552_07205 PF00923 Transaldolase/Fructose-6-phosphate aldolase PF552_07210 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family PF552_07210 PF03466 LysR substrate binding domain PF552_07220 PF02803 Thiolase, C-terminal domain PF552_07220 PF00108 Thiolase, N-terminal domain PF552_07230 PF01575 MaoC like domain PF552_07235 PF00144 Beta-lactamase PF552_07245 PF07690 Major Facilitator Superfamily PF552_07250 PF12170 DNA polymerase III tau subunit V interacting with alpha PF552_07250 PF12169 DNA polymerase III subunits gamma and tau domain III PF552_07250 PF12168 DNA polymerase III subunits tau domain IV DnaB-binding PF552_07255 PF04185 Phosphoesterase family PF552_07255 PF05506 Domain of unknown function (DUF756) PF552_07260 PF03061 Thioesterase superfamily PF552_07265 PF00465 Iron-containing alcohol dehydrogenase PF552_07275 PF01451 Low molecular weight phosphotyrosine protein phosphatase PF552_07280 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain PF552_07280 PF01565 FAD binding domain PF552_07295 PF01645 Conserved region in glutamate synthase PF552_07315 PF12832 MFS_1 like family PF552_07325 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain PF552_07325 PF00289 Biotin carboxylase, N-terminal domain PF552_07325 PF02785 Biotin carboxylase C-terminal domain PF552_07330 PF00364 Biotin-requiring enzyme PF552_07335 PF01220 Dehydroquinase class II PF552_07340 PF13438 Domain of unknown function (DUF4113) PF552_07340 PF00817 impB/mucB/samB family PF552_07340 PF11799 impB/mucB/samB family C-terminal domain PF552_07350 PF00005 ABC transporter PF552_07355 PF00486 Transcriptional regulatory protein, C terminal PF552_07355 PF00072 Response regulator receiver domain PF552_07365 PF13806 Rieske-like [2Fe-2S] domain PF552_07365 PF18267 Rubredoxin NAD+ reductase C-terminal domain PF552_07365 PF01077 Nitrite and sulphite reductase 4Fe-4S domain PF552_07365 PF04324 BFD-like [2Fe-2S] binding domain PF552_07365 PF07992 Pyridine nucleotide-disulphide oxidoreductase PF552_07365 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain PF552_07370 PF18267 Rubredoxin NAD+ reductase C-terminal domain PF552_07370 PF07992 Pyridine nucleotide-disulphide oxidoreductase PF552_07370 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain PF552_07370 PF01077 Nitrite and sulphite reductase 4Fe-4S domain PF552_07370 PF04324 BFD-like [2Fe-2S] binding domain PF552_07375 PF04324 BFD-like [2Fe-2S] binding domain PF552_07375 PF04879 Molybdopterin oxidoreductase Fe4S4 domain PF552_07375 PF00384 Molybdopterin oxidoreductase PF552_07375 PF01568 Molydopterin dinucleotide binding domain PF552_07380 PF12804 MobA-like NTP transferase domain PF552_07385 PF00384 Molybdopterin oxidoreductase PF552_07385 PF04879 Molybdopterin oxidoreductase Fe4S4 domain PF552_07385 PF01568 Molydopterin dinucleotide binding domain PF552_07390 PF04055 Radical SAM superfamily PF552_07390 PF06463 Molybdenum Cofactor Synthesis C PF552_07400 PF02391 MoaE protein PF552_07405 PF01967 MoaC family PF552_07405 PF00994 Probable molybdopterin binding domain PF552_07410 PF00994 Probable molybdopterin binding domain PF552_07410 PF03454 MoeA C-terminal region (domain IV) PF552_07410 PF03453 MoeA N-terminal region (domain I and II) PF552_07415 PF01638 HxlR-like helix-turn-helix PF552_07420 PF00392 Bacterial regulatory proteins, gntR family PF552_07420 PF00155 Aminotransferase class I and II PF552_07425 PF00892 EamA-like transporter family PF552_07445 PF02635 DsrE/DsrF-like family PF552_07450 PF16363 GDP-mannose 4,6 dehydratase PF552_07455 PF00206 Lyase PF552_07455 PF10415 Fumarase C C-terminus PF552_07475 PF01266 FAD dependent oxidoreductase PF552_07485 PF02542 YgbB family PF552_07495 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain PF552_07495 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain PF552_07500 PF00440 Bacterial regulatory proteins, tetR family PF552_07505 PF00158 Sigma-54 interaction domain PF552_07505 PF00072 Response regulator receiver domain PF552_07505 PF02954 Bacterial regulatory protein, Fis family PF552_07510 PF00989 PAS fold PF552_07510 PF00512 His Kinase A (phospho-acceptor) domain PF552_07510 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PF552_07515 PF00919 Uncharacterized protein family UPF0004 PF552_07515 PF04055 Radical SAM superfamily PF552_07515 PF18693 TRAM domain PF552_07520 PF00696 Amino acid kinase family PF552_07525 PF01765 Ribosome recycling factor PF552_07530 PF01255 Putative undecaprenyl diphosphate synthase PF552_07540 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain PF552_07540 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase PF552_07540 PF13288 DXP reductoisomerase C-terminal domain PF552_07545 PF13180 PDZ domain PF552_07545 PF17820 PDZ domain PF552_07545 PF02163 Peptidase family M50 PF552_07550 PF01103 Surface antigen PF552_07550 PF07244 Surface antigen variable number repeat PF552_07560 PF00132 Bacterial transferase hexapeptide (six repeats) PF552_07560 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD PF552_07565 PF07977 FabA-like domain PF552_07570 PF00132 Bacterial transferase hexapeptide (six repeats) PF552_07570 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 PF552_07585 PF02631 RecX family PF552_07590 PF00154 recA bacterial DNA recombination protein PF552_07595 PF01479 S4 domain PF552_07600 PF13419 Haloacid dehalogenase-like hydrolase PF552_07625 PF01037 Lrp/AsnC ligand binding domain PF552_07630 PF00266 Aminotransferase class-V PF552_07635 PF00324 Amino acid permease PF552_07650 PF05922 Peptidase inhibitor I9 PF552_07650 PF00082 Subtilase family PF552_07655 PF01740 STAS domain PF552_07655 PF00916 Sulfate permease family PF552_07660 PF02586 SOS response associated peptidase (SRAP) PF552_07665 PF07995 Glucose / Sorbosone dehydrogenase PF552_07675 PF00990 Diguanylate cyclase, GGDEF domain PF552_07675 PF03707 Bacterial signalling protein N terminal repeat PF552_07675 PF00563 EAL domain PF552_07695 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit PF552_07695 PF02378 Phosphotransferase system, EIIC PF552_07700 PF00294 pfkB family carbohydrate kinase PF552_07705 PF00381 PTS HPr component phosphorylation site PF552_07705 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 PF552_07705 PF02896 PEP-utilising enzyme, TIM barrel domain PF552_07705 PF00391 PEP-utilising enzyme, mobile domain PF552_07705 PF05524 PEP-utilising enzyme, N-terminal PF552_07730 PF05525 Branched-chain amino acid transport protein PF552_07735 PF00557 Metallopeptidase family M24 PF552_07740 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family PF552_07740 PF03466 LysR substrate binding domain PF552_07750 PF00462 Glutaredoxin PF552_07755 PF00202 Aminotransferase class-III PF552_07760 PF00478 IMP dehydrogenase / GMP reductase domain PF552_07760 PF00571 CBS domain PF552_07785 PF00448 SRP54-type protein, GTPase domain PF552_07785 PF02881 SRP54-type protein, helical bundle domain PF552_07795 PF09829 Uncharacterized protein conserved in bacteria (DUF2057) PF552_07805 PF08173 Membrane bound YbgT-like protein PF552_07810 PF02322 Cytochrome bd terminal oxidase subunit II PF552_07815 PF01654 Cytochrome bd terminal oxidase subunit I PF552_07825 PF07290 Protein of unknown function (DUF1449) PF552_07835 PF00294 pfkB family carbohydrate kinase PF552_07840 PF07715 TonB-dependent Receptor Plug Domain PF552_07840 PF00593 TonB dependent receptor PF552_07845 PF08367 Peptidase M16C associated PF552_07845 PF00675 Insulinase (Peptidase family M16) PF552_07845 PF05193 Peptidase M16 inactive domain PF552_07850 PF02253 Phospholipase A1 PF552_07855 PF02386 Cation transport protein PF552_07860 PF02254 TrkA-N domain PF552_07860 PF02080 TrkA-C domain PF552_07865 PF00291 Pyridoxal-phosphate dependent enzyme PF552_07865 PF00585 C-terminal regulatory domain of Threonine dehydratase PF552_07870 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) PF552_07885 PF01118 Semialdehyde dehydrogenase, NAD binding domain PF552_07885 PF02774 Semialdehyde dehydrogenase, dimerisation domain PF552_07895 PF02617 ATP-dependent Clp protease adaptor protein ClpS PF552_07900 PF00004 ATPase family associated with various cellular activities (AAA) PF552_07900 PF07724 AAA domain (Cdc48 subfamily) PF552_07900 PF17871 AAA lid domain PF552_07900 PF02861 Clp amino terminal domain, pathogenicity island component PF552_07900 PF10431 C-terminal, D2-small domain, of ClpB protein PF552_07905 PF02694 Uncharacterised BCR, YnfA/UPF0060 family PF552_07910 PF00793 DAHP synthetase I family PF552_07925 PF07992 Pyridine nucleotide-disulphide oxidoreductase PF552_07925 PF00724 NADH:flavin oxidoreductase / NADH oxidase family PF552_07955 PF06418 CTP synthase N-terminus PF552_07955 PF00117 Glutamine amidotransferase class-I PF552_07960 PF00793 DAHP synthetase I family PF552_07965 PF00113 Enolase, C-terminal TIM barrel domain PF552_07965 PF03952 Enolase, N-terminal domain PF552_07970 PF04239 Protein of unknown function (DUF421) PF552_07975 PF04977 Septum formation initiator PF552_07980 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase PF552_07985 PF01144 Coenzyme A transferase PF552_07990 PF01144 Coenzyme A transferase PF552_07995 PF00108 Thiolase, N-terminal domain PF552_07995 PF02803 Thiolase, C-terminal domain PF552_08000 PF10397 Adenylosuccinate lyase C-terminus PF552_08000 PF00206 Lyase PF552_08005 PF00561 alpha/beta hydrolase fold PF552_08010 PF07690 Major Facilitator Superfamily PF552_08015 PF02627 Carboxymuconolactone decarboxylase family PF552_08020 PF00775 Dioxygenase PF552_08020 PF12391 Protocatechuate 3,4-dioxygenase beta subunit N terminal PF552_08025 PF00775 Dioxygenase PF552_08030 PF01487 Type I 3-dehydroquinase PF552_08035 PF05048 Periplasmic copper-binding protein (NosD) PF552_08040 PF04966 Carbohydrate-selective porin, OprB family PF552_08045 PF13360 PQQ-like domain PF552_08045 PF01011 PQQ enzyme repeat PF552_08055 PF04143 Sulphur transport PF552_08065 PF00753 Metallo-beta-lactamase superfamily PF552_08070 PF01614 Bacterial transcriptional regulator PF552_08070 PF09339 IclR helix-turn-helix domain PF552_08075 PF03466 LysR substrate binding domain PF552_08075 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family PF552_08080 PF02770 Acyl-CoA dehydrogenase, middle domain PF552_08080 PF00441 Acyl-CoA dehydrogenase, C-terminal domain PF552_08080 PF02771 Acyl-CoA dehydrogenase, N-terminal domain PF552_08095 PF00106 short chain dehydrogenase PF552_08105 PF07690 Major Facilitator Superfamily PF552_08115 PF01425 Amidase PF552_08120 PF08028 Acyl-CoA dehydrogenase, C-terminal domain PF552_08135 PF00355 Rieske [2Fe-2S] domain PF552_08135 PF00848 Ring hydroxylating alpha subunit (catalytic domain) PF552_08150 PF00175 Oxidoreductase NAD-binding domain PF552_08150 PF00111 2Fe-2S iron-sulfur cluster binding domain PF552_08155 PF01613 Flavin reductase like domain PF552_08160 PF12833 Helix-turn-helix domain PF552_08160 PF02311 AraC-like ligand binding domain PF552_08165 PF01179 Copper amine oxidase, enzyme domain PF552_08165 PF07833 Copper amine oxidase N-terminal domain PF552_08165 PF02728 Copper amine oxidase, N3 domain PF552_08165 PF02727 Copper amine oxidase, N2 domain PF552_08175 PF00171 Aldehyde dehydrogenase family PF552_08180 PF01804 Penicillin amidase PF552_08185 PF12146 Serine aminopeptidase, S33 PF552_08190 PF00108 Thiolase, N-terminal domain PF552_08190 PF02803 Thiolase, C-terminal domain PF552_08195 PF01144 Coenzyme A transferase PF552_08200 PF01144 Coenzyme A transferase PF552_08205 PF00775 Dioxygenase PF552_08205 PF04444 Catechol dioxygenase N terminus PF552_08210 PF02426 Muconolactone delta-isomerase PF552_08215 PF13378 Enolase C-terminal domain-like PF552_08215 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain PF552_08220 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family PF552_08220 PF03466 LysR substrate binding domain PF552_08230 PF07729 FCD domain PF552_08230 PF00392 Bacterial regulatory proteins, gntR family PF552_08235 PF00920 Dehydratase family PF552_08240 PF07690 Major Facilitator Superfamily PF552_08250 PF00171 Aldehyde dehydrogenase family PF552_08255 PF01636 Phosphotransferase enzyme family PF552_08270 PF02771 Acyl-CoA dehydrogenase, N-terminal domain PF552_08270 PF00441 Acyl-CoA dehydrogenase, C-terminal domain PF552_08270 PF02770 Acyl-CoA dehydrogenase, middle domain PF552_08280 PF00158 Sigma-54 interaction domain PF552_08280 PF06506 Propionate catabolism activator PF552_08280 PF02954 Bacterial regulatory protein, Fis family PF552_08285 PF13193 AMP-binding enzyme C-terminal domain PF552_08285 PF00501 AMP-binding enzyme PF552_08290 PF04341 Protein of unknown function, DUF485 PF552_08295 PF00474 Sodium:solute symporter family PF552_08300 PF00107 Zinc-binding dehydrogenase PF552_08300 PF08240 Alcohol dehydrogenase GroES-like domain PF552_08325 PF00561 alpha/beta hydrolase fold PF552_08330 PF00199 Catalase PF552_08330 PF06628 Catalase-related immune-responsive PF552_08350 PF07859 alpha/beta hydrolase fold PF552_08355 PF01047 MarR family PF552_08360 PF07992 Pyridine nucleotide-disulphide oxidoreductase PF552_08360 PF00724 NADH:flavin oxidoreductase / NADH oxidase family PF552_08370 PF09278 MerR, DNA binding PF552_08370 PF00376 MerR family regulatory protein PF552_08380 PF07992 Pyridine nucleotide-disulphide oxidoreductase PF552_08390 PF12706 Beta-lactamase superfamily domain PF552_08395 PF00440 Bacterial regulatory proteins, tetR family PF552_08395 PF08359 YsiA-like protein, C-terminal region PF552_08405 PF00857 Isochorismatase family PF552_08410 PF03466 LysR substrate binding domain PF552_08410 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family PF552_08415 PF07995 Glucose / Sorbosone dehydrogenase PF552_08420 PF00999 Sodium/hydrogen exchanger family PF552_08420 PF02254 TrkA-N domain PF552_08430 PF07687 Peptidase dimerisation domain PF552_08430 PF01546 Peptidase family M20/M25/M40 PF552_08465 PF10077 Uncharacterized protein conserved in bacteria (DUF2314) PF552_08470 PF07690 Major Facilitator Superfamily PF552_08475 PF04909 Amidohydrolase PF552_08485 PF00392 Bacterial regulatory proteins, gntR family PF552_08485 PF07702 UTRA domain PF552_08490 PF08450 SMP-30/Gluconolactonase/LRE-like region PF552_08500 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family PF552_08500 PF03466 LysR substrate binding domain PF552_08515 PF13533 Biotin-lipoyl like PF552_08530 PF12833 Helix-turn-helix domain PF552_08530 PF00072 Response regulator receiver domain PF552_08535 PF01266 FAD dependent oxidoreductase PF552_08545 PF00893 Small Multidrug Resistance protein PF552_08555 PF01266 FAD dependent oxidoreductase PF552_08575 PF00171 Aldehyde dehydrogenase family PF552_08590 PF00579 tRNA synthetases class I (W and Y) PF552_08595 PF07690 Major Facilitator Superfamily PF552_08605 PF01557 Fumarylacetoacetate (FAA) hydrolase family PF552_08610 PF01557 Fumarylacetoacetate (FAA) hydrolase family PF552_08615 PF00171 Aldehyde dehydrogenase family PF552_08620 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase PF552_08625 PF02962 5-carboxymethyl-2-hydroxymuconate isomerase PF552_08630 PF01557 Fumarylacetoacetate (FAA) hydrolase family PF552_08635 PF03328 HpcH/HpaI aldolase/citrate lyase family PF552_08640 PF00171 Aldehyde dehydrogenase family PF552_08645 PF07690 Major Facilitator Superfamily PF552_08645 PF00083 Sugar (and other) transporter PF552_08650 PF08028 Acyl-CoA dehydrogenase, C-terminal domain PF552_08655 PF01613 Flavin reductase like domain PF552_08660 PF01047 MarR family PF552_08665 PF00171 Aldehyde dehydrogenase family PF552_08670 PF00920 Dehydratase family PF552_08680 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family PF552_08680 PF03466 LysR substrate binding domain PF552_08685 PF01370 NAD dependent epimerase/dehydratase family PF552_08690 PF07690 Major Facilitator Superfamily PF552_08695 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase PF552_08695 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase PF552_08700 PF12833 Helix-turn-helix domain PF552_08700 PF06719 AraC-type transcriptional regulator N-terminus PF552_08715 PF00107 Zinc-binding dehydrogenase PF552_08715 PF08240 Alcohol dehydrogenase GroES-like domain PF552_08725 PF01032 FecCD transport family PF552_08730 PF00005 ABC transporter PF552_08750 PF14572 Phosphoribosyl synthetase-associated domain PF552_08750 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase PF552_08755 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family PF552_08770 PF13533 Biotin-lipoyl like PF552_08775 PF07690 Major Facilitator Superfamily PF552_08800 PF01975 Survival protein SurE PF552_08820 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family PF552_08825 PF07690 Major Facilitator Superfamily PF552_08830 PF07993 Male sterility protein PF552_08830 PF00550 Phosphopantetheine attachment site PF552_08870 PF02311 AraC-like ligand binding domain PF552_08870 PF12833 Helix-turn-helix domain PF552_08880 PF16527 Two-component sensor protein CpxA, periplasmic domain PF552_08880 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PF552_08880 PF00672 HAMP domain PF552_08880 PF00512 His Kinase A (phospho-acceptor) domain PF552_08885 PF00072 Response regulator receiver domain PF552_08885 PF00486 Transcriptional regulatory protein, C terminal PF552_08890 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion PF552_08890 PF00529 HlyD membrane-fusion protein of T1SS PF552_08895 PF00873 AcrB/AcrD/AcrF family PF552_08900 PF17760 UvrA interaction domain PF552_08900 PF17755 UvrA DNA-binding domain PF552_08900 PF00005 ABC transporter PF552_08920 PF08240 Alcohol dehydrogenase GroES-like domain PF552_08920 PF00107 Zinc-binding dehydrogenase PF552_08930 PF00199 Catalase PF552_08945 PF13091 PLD-like domain PF552_08960 PF01244 Membrane dipeptidase (Peptidase family M19) PF552_08965 PF13186 Iron-sulfur cluster-binding domain PF552_08965 PF04055 Radical SAM superfamily PF552_08970 PF05402 Coenzyme PQQ synthesis protein D (PqqD) PF552_08975 PF03070 TENA/THI-4/PQQC family PF552_08980 PF12706 Beta-lactamase superfamily domain PF552_08985 PF08042 PqqA family PF552_08990 PF02503 Polyphosphate kinase middle domain PF552_08990 PF13089 Polyphosphate kinase N-terminal domain PF552_08990 PF13090 Polyphosphate kinase C-terminal domain 2 PF552_08990 PF17941 Polyphosphate kinase C-terminal domain 1 PF552_08995 PF00149 Calcineurin-like phosphoesterase PF552_09005 PF00857 Isochorismatase family PF552_09005 PF00550 Phosphopantetheine attachment site PF552_09010 PF00106 short chain dehydrogenase PF552_09015 PF00005 ABC transporter PF552_09015 PF03459 TOBE domain PF552_09020 PF00528 Binding-protein-dependent transport system inner membrane component PF552_09030 PF03459 TOBE domain PF552_09030 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family PF552_09035 PF00848 Ring hydroxylating alpha subunit (catalytic domain) PF552_09035 PF00355 Rieske [2Fe-2S] domain PF552_09040 PF00866 Ring hydroxylating beta subunit PF552_09045 PF00175 Oxidoreductase NAD-binding domain PF552_09045 PF00970 Oxidoreductase FAD-binding domain PF552_09045 PF00111 2Fe-2S iron-sulfur cluster binding domain PF552_09050 PF12833 Helix-turn-helix domain PF552_09050 PF14525 AraC-binding-like domain PF552_09060 PF01613 Flavin reductase like domain PF552_09075 PF01738 Dienelactone hydrolase family PF552_09080 PF07690 Major Facilitator Superfamily PF552_09085 PF12833 Helix-turn-helix domain PF552_09085 PF06719 AraC-type transcriptional regulator N-terminus PF552_09105 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family PF552_09105 PF03466 LysR substrate binding domain PF552_09110 PF01144 Coenzyme A transferase PF552_09115 PF01144 Coenzyme A transferase PF552_09120 PF02667 Short chain fatty acid transporter PF552_09125 PF00108 Thiolase, N-terminal domain PF552_09125 PF02803 Thiolase, C-terminal domain PF552_09130 PF03466 LysR substrate binding domain PF552_09130 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family PF552_09135 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family PF552_09135 PF03466 LysR substrate binding domain PF552_09150 PF00206 Lyase PF552_09150 PF10415 Fumarase C C-terminus PF552_09155 PF00593 TonB dependent receptor PF552_09155 PF07715 TonB-dependent Receptor Plug Domain PF552_09160 PF00083 Sugar (and other) transporter PF552_09175 PF00005 ABC transporter PF552_09180 PF00528 Binding-protein-dependent transport system inner membrane component PF552_09185 PF04069 Substrate binding domain of ABC-type glycine betaine transport system PF552_09200 PF00392 Bacterial regulatory proteins, gntR family PF552_09200 PF07702 UTRA domain PF552_09205 PF02417 Chromate transporter PF552_09210 PF02525 Flavodoxin-like fold PF552_09215 PF01638 HxlR-like helix-turn-helix PF552_09220 PF06445 GyrI-like small molecule binding domain PF552_09220 PF12833 Helix-turn-helix domain PF552_09235 PF01925 Sulfite exporter TauE/SafE PF552_09250 PF00753 Metallo-beta-lactamase superfamily PF552_09250 PF04273 Putative phosphatase (DUF442) PF552_09255 PF00072 Response regulator receiver domain PF552_09255 PF02954 Bacterial regulatory protein, Fis family PF552_09255 PF00158 Sigma-54 interaction domain PF552_09260 PF01062 Bestrophin, RFP-TM, chloride channel PF552_09265 PF08240 Alcohol dehydrogenase GroES-like domain PF552_09265 PF00107 Zinc-binding dehydrogenase PF552_09270 PF00106 short chain dehydrogenase PF552_09275 PF07992 Pyridine nucleotide-disulphide oxidoreductase PF552_09275 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain PF552_09280 PF02817 e3 binding domain PF552_09280 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) PF552_09280 PF00364 Biotin-requiring enzyme PF552_09285 PF02779 Transketolase, pyrimidine binding domain PF552_09285 PF02780 Transketolase, C-terminal domain PF552_09290 PF00676 Dehydrogenase E1 component PF552_09295 PF04055 Radical SAM superfamily PF552_09310 PF00990 Diguanylate cyclase, GGDEF domain PF552_09310 PF08448 PAS fold PF552_09315 PF01264 Chorismate synthase PF552_09320 PF05175 Methyltransferase small domain PF552_09325 PF00291 Pyridoxal-phosphate dependent enzyme PF552_09335 PF17862 AAA+ lid domain PF552_09335 PF00004 ATPase family associated with various cellular activities (AAA) PF552_09335 PF01434 Peptidase family M41 PF552_09345 PF05166 YcgL domain PF552_09365 PF01612 3'-5' exonuclease PF552_09365 PF00570 HRDC domain PF552_09370 PF13662 Toprim domain PF552_09370 PF02132 RecR protein PF552_09375 PF02575 YbaB/EbfC DNA-binding family PF552_09385 PF01053 Cys/Met metabolism PLP-dependent enzyme PF552_09390 PF00561 alpha/beta hydrolase fold PF552_09395 PF08241 Methyltransferase domain PF552_09425 PF01230 HIT domain PF552_09460 PF00005 ABC transporter PF552_09465 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion PF552_09475 PF02684 Lipid-A-disaccharide synthetase PF552_09500 PF01925 Sulfite exporter TauE/SafE PF552_09505 PF00793 DAHP synthetase I family PF552_09510 PF02654 Cobalamin-5-phosphate synthase PF552_09520 PF00300 Histidine phosphatase superfamily (branch 1) PF552_09525 PF02277 Phosphoribosyltransferase PF552_09530 PF02283 Cobinamide kinase / cobinamide phosphate guanyltransferase PF552_09540 PF13419 Haloacid dehalogenase-like hydrolase PF552_09565 PF00593 TonB dependent receptor PF552_09565 PF07715 TonB-dependent Receptor Plug Domain PF552_09570 PF03737 Aldolase/RraA PF552_09580 PF04183 IucA / IucC family PF552_09580 PF06276 Ferric iron reductase FhuF-like transporter PF552_09585 PF04183 IucA / IucC family PF552_09585 PF06276 Ferric iron reductase FhuF-like transporter PF552_09590 PF07690 Major Facilitator Superfamily PF552_09595 PF13434 L-lysine 6-monooxygenase (NADPH-requiring) PF552_09600 PF04183 IucA / IucC family PF552_09600 PF06276 Ferric iron reductase FhuF-like transporter PF552_09605 PF04073 Aminoacyl-tRNA editing domain PF552_09615 PF03109 ABC1 family PF552_09620 PF02771 Acyl-CoA dehydrogenase, N-terminal domain PF552_09620 PF02770 Acyl-CoA dehydrogenase, middle domain PF552_09620 PF00441 Acyl-CoA dehydrogenase, C-terminal domain PF552_09625 PF02771 Acyl-CoA dehydrogenase, N-terminal domain PF552_09625 PF02770 Acyl-CoA dehydrogenase, middle domain PF552_09625 PF00441 Acyl-CoA dehydrogenase, C-terminal domain PF552_09630 PF00487 Fatty acid desaturase PF552_09635 PF12833 Helix-turn-helix domain PF552_09635 PF12852 Cupin PF552_09640 PF00639 PPIC-type PPIASE domain PF552_09640 PF09312 SurA N-terminal domain PF552_09645 PF00216 Bacterial DNA-binding protein PF552_09660 PF02082 Transcriptional regulator PF552_09665 PF00266 Aminotransferase class-V PF552_09670 PF01592 NifU-like N terminal domain PF552_09675 PF01521 Iron-sulphur cluster biosynthesis PF552_09680 PF00226 DnaJ domain PF552_09680 PF07743 HSCB C-terminal oligomerisation domain PF552_09685 PF00012 Hsp70 protein PF552_09690 PF00111 2Fe-2S iron-sulfur cluster binding domain PF552_09695 PF00211 Adenylate and Guanylate cyclase catalytic domain PF552_09705 PF00271 Helicase conserved C-terminal domain PF552_09705 PF17757 UvrB interaction domain PF552_09705 PF03461 TRCF domain PF552_09705 PF00270 DEAD/DEAH box helicase PF552_09705 PF02559 CarD-like/TRCF domain PF552_09725 PF03737 Aldolase/RraA PF552_09730 PF13460 NAD(P)H-binding PF552_09735 PF01649 Ribosomal protein S20 PF552_09745 PF00459 Inositol monophosphatase family PF552_09760 PF00005 ABC transporter PF552_09760 PF08352 Oligopeptide/dipeptide transporter, C-terminal region PF552_09765 PF00528 Binding-protein-dependent transport system inner membrane component PF552_09770 PF00528 Binding-protein-dependent transport system inner membrane component PF552_09775 PF01432 Peptidase family M3 PF552_09785 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle PF552_09790 PF00593 TonB dependent receptor PF552_09790 PF07715 TonB-dependent Receptor Plug Domain PF552_09800 PF01618 MotA/TolQ/ExbB proton channel family PF552_09805 PF02472 Biopolymer transport protein ExbD/TolR PF552_09810 PF02472 Biopolymer transport protein ExbD/TolR PF552_09820 PF01274 Malate synthase PF552_09825 PF03969 AFG1-like ATPase PF552_09835 PF00743 Flavin-binding monooxygenase-like PF552_09845 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family PF552_09855 PF00216 Bacterial DNA-binding protein PF552_09860 PF00575 S1 RNA binding domain PF552_09865 PF02224 Cytidylate kinase PF552_09875 PF14437 MafB19-like deaminase PF552_09885 PF03167 Uracil DNA glycosylase superfamily PF552_09895 PF03934 Type II secretion system (T2SS), protein K PF552_09900 PF07963 Prokaryotic N-terminal methylation motif PF552_09900 PF11612 Type II secretion system (T2SS), protein J PF552_09905 PF07963 Prokaryotic N-terminal methylation motif PF552_09905 PF02501 Type II secretion system (T2SS), protein I PF552_09920 PF01026 TatD related DNase PF552_09930 PF09115 DNA polymerase III, delta subunit, C terminal PF552_09935 PF02348 Cytidylyltransferase PF552_09940 PF02606 Tetraacyldisaccharide-1-P 4'-kinase PF552_09945 PF00005 ABC transporter PF552_09945 PF00664 ABC transporter transmembrane region PF552_09955 PF01618 MotA/TolQ/ExbB proton channel family PF552_09960 PF17762 HTH domain found in ParB protein PF552_09960 PF02195 ParB-like nuclease domain PF552_09965 PF13614 AAA domain PF552_09970 PF02527 rRNA small subunit methyltransferase G PF552_09975 PF00483 Nucleotidyl transferase PF552_09980 PF01636 Phosphotransferase enzyme family PF552_09985 PF03968 OstA-like protein PF552_09985 PF04453 LPS transport system D PF552_09990 PF00639 PPIC-type PPIASE domain PF552_09990 PF09312 SurA N-terminal domain PF552_09995 PF01116 Fructose-bisphosphate aldolase class-II PF552_10005 PF00162 Phosphoglycerate kinase PF552_10015 PF02545 Maf-like protein PF552_10020 PF08007 Cupin superfamily protein PF552_10035 PF00375 Sodium:dicarboxylate symporter family PF552_10040 PF06912 Protein of unknown function (DUF1275) PF552_10045 PF09831 Uncharacterized protein conserved in bacteria (DUF2058) PF552_10050 PF00005 ABC transporter PF552_10050 PF00664 ABC transporter transmembrane region PF552_10060 PF12833 Helix-turn-helix domain PF552_10060 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term PF552_10065 PF01597 Glycine cleavage H-protein PF552_10070 PF02146 Sir2 family PF552_10075 PF00474 Sodium:solute symporter family PF552_10080 PF01037 Lrp/AsnC ligand binding domain PF552_10085 PF00171 Aldehyde dehydrogenase family PF552_10085 PF01619 Proline dehydrogenase PF552_10085 PF14850 DNA-binding domain of Proline dehydrogenase PF552_10085 PF18327 Proline utilization A proline dehydrogenase N-terminal domain PF552_10090 PF04229 GrpB protein PF552_10095 PF05958 tRNA (Uracil-5-)-methyltransferase PF552_10105 PF09992 Phosphodiester glycosidase PF552_10115 PF04264 YceI-like domain PF552_10125 PF02779 Transketolase, pyrimidine binding domain PF552_10125 PF00456 Transketolase, thiamine diphosphate binding domain PF552_10125 PF02780 Transketolase, C-terminal domain PF552_10130 PF02772 S-adenosylmethionine synthetase, central domain PF552_10130 PF00438 S-adenosylmethionine synthetase, N-terminal domain PF552_10130 PF02773 S-adenosylmethionine synthetase, C-terminal domain PF552_10150 PF00905 Penicillin binding protein transpeptidase domain PF552_10165 PF02075 Crossover junction endodeoxyribonuclease RuvC PF552_10170 PF01256 Carbohydrate kinase PF552_10170 PF03853 YjeF-related protein N-terminus PF552_10175 PF08331 Domain of unknown function (DUF1730) PF552_10180 PF06968 Biotin and Thiamin Synthesis associated domain PF552_10180 PF04055 Radical SAM superfamily PF552_10195 PF16970 Type-1 fimbrial protein, A PF552_10200 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain PF552_10200 PF02753 Pili assembly chaperone PapD, C-terminal domain PF552_10205 PF13953 PapC C-terminal domain PF552_10205 PF13954 PapC N-terminal domain PF552_10205 PF00577 Outer membrane usher protein PF552_10225 PF00892 EamA-like transporter family PF552_10235 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin PF552_10245 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family PF552_10245 PF03466 LysR substrate binding domain PF552_10265 PF00440 Bacterial regulatory proteins, tetR family PF552_10275 PF01709 Transcriptional regulator PF552_10280 PF01037 Lrp/AsnC ligand binding domain PF552_10290 PF00005 ABC transporter PF552_10295 PF00528 Binding-protein-dependent transport system inner membrane component PF552_10300 PF00528 Binding-protein-dependent transport system inner membrane component PF552_10315 PF08028 Acyl-CoA dehydrogenase, C-terminal domain PF552_10315 PF02771 Acyl-CoA dehydrogenase, N-terminal domain PF552_10325 PF00296 Luciferase-like monooxygenase PF552_10330 PF03180 NLPA lipoprotein PF552_10335 PF03180 NLPA lipoprotein PF552_10340 PF00005 ABC transporter PF552_10340 PF09383 NIL domain PF552_10345 PF00528 Binding-protein-dependent transport system inner membrane component PF552_10350 PF01926 50S ribosome-binding GTPase PF552_10350 PF06071 Protein of unknown function (DUF933) PF552_10375 PF03591 AzlC protein PF552_10380 PF05437 Branched-chain amino acid transport protein (AzlD) PF552_10390 PF02222 ATP-grasp domain PF552_10395 PF08335 GlnD PII-uridylyltransferase PF552_10395 PF01909 Nucleotidyltransferase domain PF552_10395 PF01966 HD domain PF552_10400 PF00155 Aminotransferase class I and II PF552_10410 PF12852 Cupin PF552_10410 PF12833 Helix-turn-helix domain PF552_10415 PF00255 Glutathione peroxidase PF552_10420 PF01641 SelR domain PF552_10425 PF00155 Aminotransferase class I and II PF552_10430 PF00375 Sodium:dicarboxylate symporter family PF552_10435 PF00710 Asparaginase, N-terminal PF552_10435 PF17763 Glutaminase/Asparaginase C-terminal domain PF552_10440 PF07733 Bacterial DNA polymerase III alpha NTPase domain PF552_10440 PF17657 Bacterial DNA polymerase III alpha subunit finger domain PF552_10440 PF14579 Helix-hairpin-helix motif PF552_10440 PF02811 PHP domain PF552_10440 PF01336 OB-fold nucleic acid binding domain PF552_10445 PF00588 SpoU rRNA Methylase family PF552_10450 PF00132 Bacterial transferase hexapeptide (six repeats) PF552_10465 PF07992 Pyridine nucleotide-disulphide oxidoreductase PF552_10465 PF13192 Thioredoxin domain PF552_10480 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family PF552_10480 PF03466 LysR substrate binding domain PF552_10485 PF01758 Sodium Bile acid symporter family PF552_10490 PF01022 Bacterial regulatory protein, arsR family PF552_10495 PF03960 ArsC family PF552_10505 PF13382 Adenine deaminase C-terminal domain PF552_10505 PF01979 Amidohydrolase family PF552_10515 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family PF552_10515 PF03466 LysR substrate binding domain PF552_10525 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin PF552_10530 PF01177 Asp/Glu/Hydantoin racemase PF552_10535 PF02668 Taurine catabolism dioxygenase TauD, TfdA family PF552_10540 PF00528 Binding-protein-dependent transport system inner membrane component PF552_10545 PF00005 ABC transporter PF552_10550 PF04069 Substrate binding domain of ABC-type glycine betaine transport system PF552_10560 PF00083 Sugar (and other) transporter PF552_10565 PF00296 Luciferase-like monooxygenase PF552_10580 PF01654 Cytochrome bd terminal oxidase subunit I PF552_10585 PF02322 Cytochrome bd terminal oxidase subunit II PF552_10595 PF00392 Bacterial regulatory proteins, gntR family PF552_10595 PF00155 Aminotransferase class I and II PF552_10600 PF03466 LysR substrate binding domain PF552_10600 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family PF552_10615 PF00698 Acyl transferase domain PF552_10620 PF10620 Phosphoribosyl-dephospho-CoA transferase MdcG PF552_10630 PF01039 Carboxyl transferase domain PF552_10635 PF06857 Malonate decarboxylase delta subunit (MdcD) PF552_10640 PF01874 ATP:dephospho-CoA triphosphoribosyl transferase PF552_10645 PF16957 Malonate decarboxylase, alpha subunit, transporter PF552_10650 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family PF552_10650 PF03466 LysR substrate binding domain PF552_10660 PF07690 Major Facilitator Superfamily PF552_10675 PF00155 Aminotransferase class I and II PF552_10675 PF00392 Bacterial regulatory proteins, gntR family PF552_10680 PF04172 LrgB-like family PF552_10685 PF03788 LrgA family PF552_10690 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family PF552_10690 PF03466 LysR substrate binding domain PF552_10695 PF14834 Glutathione S-transferase, C-terminal domain PF552_10695 PF02798 Glutathione S-transferase, N-terminal domain PF552_10700 PF02798 Glutathione S-transferase, N-terminal domain PF552_10705 PF03466 LysR substrate binding domain PF552_10705 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family PF552_10715 PF00581 Rhodanese-like domain PF552_10720 PF00132 Bacterial transferase hexapeptide (six repeats) PF552_10730 PF00266 Aminotransferase class-V PF552_10740 PF01810 LysE type translocator PF552_10745 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family PF552_10745 PF03466 LysR substrate binding domain PF552_10755 PF00497 Bacterial extracellular solute-binding proteins, family 3 PF552_10760 PF00497 Bacterial extracellular solute-binding proteins, family 3 PF552_10765 PF00005 ABC transporter PF552_10770 PF00528 Binding-protein-dependent transport system inner membrane component PF552_10775 PF00528 Binding-protein-dependent transport system inner membrane component PF552_10790 PF00072 Response regulator receiver domain PF552_10795 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PF552_10795 PF00512 His Kinase A (phospho-acceptor) domain PF552_10795 PF09308 LuxQ, periplasmic PF552_10795 PF00072 Response regulator receiver domain PF552_10805 PF13404 AsnC-type helix-turn-helix domain PF552_10805 PF01037 Lrp/AsnC ligand binding domain PF552_10815 PF00717 Peptidase S24-like PF552_10840 PF00199 Catalase PF552_10840 PF06628 Catalase-related immune-responsive PF552_10840 PF18011 C-terminal domain found in long catalases PF552_10850 PF18146 Damage-inducible protein CinA KH domain PF552_10850 PF02464 Competence-damaged protein PF552_10850 PF00994 Probable molybdopterin binding domain PF552_10885 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family PF552_10885 PF03466 LysR substrate binding domain PF552_10905 PF00501 AMP-binding enzyme PF552_10905 PF13193 AMP-binding enzyme C-terminal domain PF552_10910 PF00440 Bacterial regulatory proteins, tetR family PF552_10915 PF00441 Acyl-CoA dehydrogenase, C-terminal domain PF552_10915 PF02770 Acyl-CoA dehydrogenase, middle domain PF552_10915 PF02771 Acyl-CoA dehydrogenase, N-terminal domain PF552_10920 PF01039 Carboxyl transferase domain PF552_10925 PF00378 Enoyl-CoA hydratase/isomerase PF552_10930 PF18140 Propionyl-coenzyme A carboxylase BT domain PF552_10930 PF02785 Biotin carboxylase C-terminal domain PF552_10930 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain PF552_10930 PF00289 Biotin carboxylase, N-terminal domain PF552_10930 PF00364 Biotin-requiring enzyme PF552_10935 PF00682 HMGL-like PF552_10940 PF03466 LysR substrate binding domain PF552_10940 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family PF552_10955 PF01810 LysE type translocator PF552_10960 PF13419 Haloacid dehalogenase-like hydrolase PF552_10965 PF00266 Aminotransferase class-V PF552_10970 PF01266 FAD dependent oxidoreductase PF552_10975 PF00528 Binding-protein-dependent transport system inner membrane component PF552_10980 PF00005 ABC transporter PF552_10980 PF08402 TOBE domain PF552_10990 PF00392 Bacterial regulatory proteins, gntR family PF552_10990 PF07702 UTRA domain PF552_10995 PF00842 Alanine racemase, C-terminal domain PF552_10995 PF01168 Alanine racemase, N-terminal domain PF552_11000 PF01494 FAD binding domain PF552_11005 PF01614 Bacterial transcriptional regulator PF552_11005 PF09339 IclR helix-turn-helix domain PF552_11010 PF02525 Flavodoxin-like fold PF552_11015 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family PF552_11015 PF03466 LysR substrate binding domain PF552_11020 PF02627 Carboxymuconolactone decarboxylase family PF552_11025 PF00171 Aldehyde dehydrogenase family PF552_11035 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin PF552_11045 PF00171 Aldehyde dehydrogenase family PF552_11050 PF00296 Luciferase-like monooxygenase PF552_11055 PF01613 Flavin reductase like domain PF552_11060 PF12697 Alpha/beta hydrolase family PF552_11080 PF01292 Prokaryotic cytochrome b561 PF552_11085 PF00199 Catalase PF552_11090 PF07690 Major Facilitator Superfamily PF552_11095 PF00682 HMGL-like PF552_11100 PF02515 CoA-transferase family III PF552_11120 PF13610 DDE domain PF552_11130 PF13495 Phage integrase, N-terminal SAM-like domain PF552_11130 PF00589 Phage integrase family PF552_11135 PF10706 Aminoglycoside-2''-adenylyltransferase PF552_11145 PF00893 Small Multidrug Resistance protein PF552_11150 PF00809 Pterin binding enzyme PF552_11160 PF01695 IstB-like ATP binding protein PF552_11175 PF13610 DDE domain PF552_11185 PF12833 Helix-turn-helix domain PF552_11185 PF06719 AraC-type transcriptional regulator N-terminus PF552_11195 PF00313 'Cold-shock' DNA-binding domain PF552_11230 PF00271 Helicase conserved C-terminal domain PF552_11230 PF12344 Ultra-violet resistance protein B PF552_11230 PF02151 UvrB/uvrC motif PF552_11230 PF04851 Type III restriction enzyme, res subunit PF552_11230 PF17757 UvrB interaction domain PF552_11240 PF03061 Thioesterase superfamily PF552_11245 PF00132 Bacterial transferase hexapeptide (six repeats) PF552_11250 PF07848 PaaX-like protein PF552_11250 PF08223 PaaX-like protein C-terminal domain PF552_11255 PF00501 AMP-binding enzyme PF552_11255 PF14535 AMP-binding enzyme C-terminal domain PF552_11260 PF02803 Thiolase, C-terminal domain PF552_11260 PF00108 Thiolase, N-terminal domain PF552_11265 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain PF552_11265 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain PF552_11265 PF18321 3-hydroxybutyryl-CoA dehydrogenase reduced Rossmann-fold domain PF552_11270 PF00378 Enoyl-CoA hydratase/isomerase PF552_11275 PF00378 Enoyl-CoA hydratase/isomerase PF552_11280 PF00970 Oxidoreductase FAD-binding domain PF552_11280 PF00175 Oxidoreductase NAD-binding domain PF552_11280 PF00111 2Fe-2S iron-sulfur cluster binding domain PF552_11285 PF01883 Iron-sulfur cluster assembly protein PF552_11290 PF05138 Phenylacetic acid catabolic protein PF552_11295 PF06243 Phenylacetic acid degradation B PF552_11300 PF05138 Phenylacetic acid catabolic protein PF552_11305 PF00171 Aldehyde dehydrogenase family PF552_11305 PF01575 MaoC like domain PF552_11310 PF03315 Serine dehydratase beta chain PF552_11310 PF03313 Serine dehydratase alpha chain PF552_11315 PF13520 Amino acid permease PF552_11320 PF00171 Aldehyde dehydrogenase family PF552_11325 PF00083 Sugar (and other) transporter PF552_11335 PF07992 Pyridine nucleotide-disulphide oxidoreductase PF552_11335 PF04324 BFD-like [2Fe-2S] binding domain PF552_11345 PF01266 FAD dependent oxidoreductase PF552_11350 PF05544 Proline racemase PF552_11355 PF00392 Bacterial regulatory proteins, gntR family PF552_11365 PF00701 Dihydrodipicolinate synthetase family PF552_11375 PF09278 MerR, DNA binding PF552_11375 PF00376 MerR family regulatory protein PF552_11385 PF02677 Epoxyqueuosine reductase QueH PF552_11400 PF07690 Major Facilitator Superfamily PF552_11405 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region PF552_11415 PF03466 LysR substrate binding domain PF552_11415 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family PF552_11435 PF05936 Bacterial Type VI secretion, VC_A0110, EvfL, ImpJ, VasE PF552_11440 PF06812 ImpA, N-terminal, type VI secretion system PF552_11445 PF07724 AAA domain (Cdc48 subfamily) PF552_11445 PF10431 C-terminal, D2-small domain, of ClpB protein PF552_11445 PF17871 AAA lid domain PF552_11445 PF00004 ATPase family associated with various cellular activities (AAA) PF552_11455 PF01389 OmpA-like transmembrane domain PF552_11455 PF00691 OmpA family PF552_11465 PF06744 Type VI secretion protein IcmF C-terminal PF552_11465 PF14331 ImcF-related N-terminal domain PF552_11465 PF06761 Intracellular multiplication and human macrophage-killing PF552_11480 PF05947 Type VI secretion system, TssF PF552_11495 PF05943 Type VI secretion protein, EvpB/VC_A0108, tail sheath PF552_11520 PF00005 ABC transporter PF552_11525 PF00497 Bacterial extracellular solute-binding proteins, family 3 PF552_11530 PF01425 Amidase PF552_11535 PF01402 Ribbon-helix-helix protein, copG family PF552_11535 PF08753 NikR C terminal nickel binding domain PF552_11545 PF01638 HxlR-like helix-turn-helix PF552_11550 PF02525 Flavodoxin-like fold PF552_11555 PF02785 Biotin carboxylase C-terminal domain PF552_11555 PF00289 Biotin carboxylase, N-terminal domain PF552_11555 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain PF552_11570 PF08240 Alcohol dehydrogenase GroES-like domain PF552_11570 PF13823 Alcohol dehydrogenase GroES-associated PF552_11570 PF00107 Zinc-binding dehydrogenase PF552_11580 PF00440 Bacterial regulatory proteins, tetR family PF552_11620 PF00654 Voltage gated chloride channel PF552_11625 PF02785 Biotin carboxylase C-terminal domain PF552_11625 PF00289 Biotin carboxylase, N-terminal domain PF552_11625 PF00364 Biotin-requiring enzyme PF552_11625 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain PF552_11635 PF07286 Protein of unknown function (DUF1445) PF552_11640 PF03746 LamB/YcsF family PF552_11645 PF01566 Natural resistance-associated macrophage protein PF552_11650 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family PF552_11675 PF03527 RHS protein PF552_11675 PF05593 RHS Repeat PF552_11680 PF13296 Putative type VI secretion system Rhs element Vgr PF552_11680 PF10106 Uncharacterized protein conserved in bacteria (DUF2345) PF552_11680 PF04717 Type VI secretion system, phage-baseplate injector PF552_11705 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain PF552_11705 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain PF552_11730 PF00528 Binding-protein-dependent transport system inner membrane component PF552_11735 PF00005 ABC transporter PF552_11740 PF00291 Pyridoxal-phosphate dependent enzyme PF552_11745 PF01177 Asp/Glu/Hydantoin racemase PF552_11750 PF07690 Major Facilitator Superfamily PF552_11770 PF01544 CorA-like Mg2+ transporter protein PF552_11780 PF03279 Bacterial lipid A biosynthesis acyltransferase PF552_11785 PF03707 Bacterial signalling protein N terminal repeat PF552_11785 PF00563 EAL domain PF552_11785 PF00990 Diguanylate cyclase, GGDEF domain PF552_11790 PF00892 EamA-like transporter family PF552_11795 PF01037 Lrp/AsnC ligand binding domain PF552_11800 PF00488 MutS domain V PF552_11800 PF05188 MutS domain II PF552_11800 PF05190 MutS family domain IV PF552_11800 PF05192 MutS domain III PF552_11800 PF01624 MutS domain I PF552_11810 PF00037 4Fe-4S binding domain PF552_11810 PF11953 Domain of unknown function (DUF3470) PF552_11820 PF01596 O-methyltransferase PF552_11830 PF00132 Bacterial transferase hexapeptide (six repeats) PF552_11835 PF01205 Uncharacterized protein family UPF0029 PF552_11845 PF00664 ABC transporter transmembrane region PF552_11845 PF00005 ABC transporter PF552_11845 PF03412 Peptidase C39 family PF552_11855 PF00005 ABC transporter PF552_11855 PF12399 Branched-chain amino acid ATP-binding cassette transporter PF552_11860 PF03968 OstA-like protein PF552_11875 PF01380 SIS domain PF552_11875 PF00571 CBS domain PF552_11880 PF01406 tRNA synthetases class I (C) catalytic domain PF552_11880 PF09190 DALR domain PF552_11910 PF01638 HxlR-like helix-turn-helix PF552_11915 PF07690 Major Facilitator Superfamily PF552_11940 PF03807 NADP oxidoreductase coenzyme F420-dependent PF552_11940 PF14748 Pyrroline-5-carboxylate reductase dimerisation PF552_11950 PF00313 'Cold-shock' DNA-binding domain PF552_11955 PF01810 LysE type translocator PF552_11985 PF02601 Exonuclease VII, large subunit PF552_11985 PF13742 OB-fold nucleic acid binding domain PF552_12020 PF09278 MerR, DNA binding PF552_12020 PF00376 MerR family regulatory protein PF552_12025 PF00403 Heavy-metal-associated domain PF552_12030 PF00403 Heavy-metal-associated domain PF552_12035 PF03466 LysR substrate binding domain PF552_12035 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family PF552_12045 PF00848 Ring hydroxylating alpha subunit (catalytic domain) PF552_12045 PF00355 Rieske [2Fe-2S] domain PF552_12055 PF00111 2Fe-2S iron-sulfur cluster binding domain PF552_12055 PF00175 Oxidoreductase NAD-binding domain PF552_12055 PF00970 Oxidoreductase FAD-binding domain PF552_12060 PF00106 short chain dehydrogenase PF552_12065 PF03594 Benzoate membrane transport protein PF552_12070 PF07690 Major Facilitator Superfamily PF552_12080 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III PF552_12080 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal PF552_12085 PF00270 DEAD/DEAH box helicase PF552_12085 PF11898 Domain of unknown function (DUF3418) PF552_12085 PF04408 Helicase associated domain (HA2) PF552_12085 PF00271 Helicase conserved C-terminal domain PF552_12085 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold PF552_12090 PF10417 C-terminal domain of 1-Cys peroxiredoxin PF552_12090 PF00578 AhpC/TSA family PF552_12110 PF07992 Pyridine nucleotide-disulphide oxidoreductase PF552_12110 PF13192 Thioredoxin domain PF552_12120 PF00043 Glutathione S-transferase, C-terminal domain PF552_12120 PF02798 Glutathione S-transferase, N-terminal domain PF552_12130 PF02390 Putative methyltransferase PF552_12290 PF13417 Glutathione S-transferase, N-terminal domain PF552_12290 PF00043 Glutathione S-transferase, C-terminal domain PF552_12300 PF13488 Glycine zipper PF552_12300 PF00691 OmpA family PF552_12305 PF01979 Amidohydrolase family PF552_12310 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain PF552_12310 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain PF552_12320 PF01170 Putative RNA methylase family UPF0020 PF552_12320 PF10672 S-adenosylmethionine-dependent methyltransferase PF552_12320 PF02926 THUMP domain PF552_12335 PF00004 ATPase family associated with various cellular activities (AAA) PF552_12335 PF10431 C-terminal, D2-small domain, of ClpB protein PF552_12335 PF02861 Clp amino terminal domain, pathogenicity island component PF552_12335 PF17871 AAA lid domain PF552_12335 PF07724 AAA domain (Cdc48 subfamily) PF552_12350 PF02566 OsmC-like protein PF552_12360 PF00027 Cyclic nucleotide-binding domain PF552_12360 PF13545 Crp-like helix-turn-helix domain PF552_12365 PF00248 Aldo/keto reductase family PF552_12380 PF00709 Adenylosuccinate synthetase PF552_12385 PF13393 Histidyl-tRNA synthetase PF552_12395 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain PF552_12395 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain PF552_12400 PF02272 DHHA1 domain PF552_12400 PF01411 tRNA synthetases class II (A) PF552_12400 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain PF552_12405 PF13840 ACT domain PF552_12405 PF01842 ACT domain PF552_12405 PF00696 Amino acid kinase family PF552_12410 PF02599 Global regulator protein family PF552_12415 PF01351 Ribonuclease HII PF552_12425 PF01292 Prokaryotic cytochrome b561 PF552_12430 PF00962 Adenosine/AMP deaminase PF552_12435 PF00860 Permease family PF552_12445 PF00743 Flavin-binding monooxygenase-like PF552_12450 PF00106 short chain dehydrogenase PF552_12460 PF02678 Pirin PF552_12460 PF17954 Quercetinase C-terminal cupin domain PF552_12465 PF17932 Tetracyclin repressor-like, C-terminal domain PF552_12465 PF00440 Bacterial regulatory proteins, tetR family PF552_12475 PF00106 short chain dehydrogenase PF552_12480 PF00743 Flavin-binding monooxygenase-like PF552_12485 PF04072 Leucine carboxyl methyltransferase PF552_12490 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term PF552_12490 PF12833 Helix-turn-helix domain PF552_12495 PF00743 Flavin-binding monooxygenase-like PF552_12500 PF00106 short chain dehydrogenase PF552_12505 PF07859 alpha/beta hydrolase fold PF552_12510 PF05199 GMC oxidoreductase PF552_12515 PF03573 outer membrane porin, OprD family PF552_12520 PF07690 Major Facilitator Superfamily PF552_12525 PF00355 Rieske [2Fe-2S] domain PF552_12530 PF00111 2Fe-2S iron-sulfur cluster binding domain PF552_12530 PF00175 Oxidoreductase NAD-binding domain PF552_12550 PF07690 Major Facilitator Superfamily PF552_12555 PF00378 Enoyl-CoA hydratase/isomerase PF552_12560 PF00171 Aldehyde dehydrogenase family PF552_12570 PF00441 Acyl-CoA dehydrogenase, C-terminal domain PF552_12570 PF02770 Acyl-CoA dehydrogenase, middle domain PF552_12570 PF02771 Acyl-CoA dehydrogenase, N-terminal domain PF552_12575 PF03573 outer membrane porin, OprD family PF552_12590 PF07519 Tannase and feruloyl esterase PF552_12595 PF07729 FCD domain PF552_12595 PF00392 Bacterial regulatory proteins, gntR family PF552_12600 PF00171 Aldehyde dehydrogenase family PF552_12605 PF00701 Dihydrodipicolinate synthetase family PF552_12610 PF13378 Enolase C-terminal domain-like PF552_12615 PF07690 Major Facilitator Superfamily PF552_12620 PF04295 D-galactarate dehydratase / Altronate hydrolase, C terminus PF552_12620 PF08666 SAF domain PF552_12625 PF00892 EamA-like transporter family PF552_12645 PF00171 Aldehyde dehydrogenase family PF552_12670 PF00324 Amino acid permease PF552_12675 PF04958 Arginine N-succinyltransferase beta subunit PF552_12680 PF00202 Aminotransferase class-III PF552_12690 PF00171 Aldehyde dehydrogenase family PF552_12700 PF07729 FCD domain PF552_12700 PF00392 Bacterial regulatory proteins, gntR family PF552_12710 PF00324 Amino acid permease PF552_12715 PF01266 FAD dependent oxidoreductase PF552_12720 PF00324 Amino acid permease PF552_12760 PF03527 RHS protein PF552_12760 PF05593 RHS Repeat PF552_12765 PF10106 Uncharacterized protein conserved in bacteria (DUF2345) PF552_12765 PF13296 Putative type VI secretion system Rhs element Vgr PF552_12765 PF04717 Type VI secretion system, phage-baseplate injector PF552_12775 PF03180 NLPA lipoprotein PF552_12780 PF05987 Bacterial protein of unknown function (DUF898) PF552_12795 PF00724 NADH:flavin oxidoreductase / NADH oxidase family PF552_12795 PF07992 Pyridine nucleotide-disulphide oxidoreductase PF552_12800 PF00764 Arginosuccinate synthase PF552_12805 PF00563 EAL domain PF552_12805 PF01590 GAF domain PF552_12805 PF00990 Diguanylate cyclase, GGDEF domain PF552_12805 PF00360 Phytochrome region PF552_12810 PF01979 Amidohydrolase family PF552_12815 PF00929 Exonuclease PF552_12825 PF00593 TonB dependent receptor PF552_12825 PF07715 TonB-dependent Receptor Plug Domain PF552_12835 PF00724 NADH:flavin oxidoreductase / NADH oxidase family PF552_12835 PF07992 Pyridine nucleotide-disulphide oxidoreductase PF552_12840 PF08352 Oligopeptide/dipeptide transporter, C-terminal region PF552_12840 PF00005 ABC transporter PF552_12845 PF00528 Binding-protein-dependent transport system inner membrane component PF552_12845 PF12911 N-terminal TM domain of oligopeptide transport permease C PF552_12850 PF00528 Binding-protein-dependent transport system inner membrane component PF552_12855 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle PF552_12860 PF01476 LysM domain PF552_12860 PF01476 LysM domain PF552_12860 PF01464 Transglycosylase SLT domain PF552_12860 PF01464 Transglycosylase SLT domain PF552_12865 PF00929 Exonuclease PF552_12875 PF00293 NUDIX domain PF552_12875 PF09297 NADH pyrophosphatase zinc ribbon domain PF552_12885 PF04972 BON domain PF552_12890 PF02021 Uncharacterised protein family UPF0102 PF552_12895 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases PF552_12905 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family PF552_12905 PF03466 LysR substrate binding domain PF552_12910 PF01810 LysE type translocator PF552_12920 PF13411 MerR HTH family regulatory protein PF552_12930 PF01494 FAD binding domain PF552_12935 PF01494 FAD binding domain PF552_12940 PF00557 Metallopeptidase family M24 PF552_12940 PF05195 Aminopeptidase P, N-terminal domain PF552_12975 PF00884 Sulfatase PF552_12975 PF08019 Phosphoethanolamine transferase EptA/EptB PF552_13030 PF01476 LysM domain PF552_13030 PF08525 Opacity-associated protein A N-terminal motif PF552_13030 PF01551 Peptidase family M23 PF552_13065 PF15919 HicB_like antitoxin of bacterial toxin-antitoxin system PF552_13345 PF01812 5-formyltetrahydrofolate cyclo-ligase family PF552_13355 PF00004 ATPase family associated with various cellular activities (AAA) PF552_13355 PF05362 Lon protease (S16) C-terminal proteolytic domain PF552_13355 PF02190 ATP-dependent protease La (LON) substrate-binding domain PF552_13360 PF02590 Predicted SPOUT methyltransferase PF552_13365 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase PF552_13375 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain PF552_13375 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase PF552_13380 PF04060 Putative Fe-S cluster PF552_13385 PF00730 HhH-GPD superfamily base excision DNA repair protein PF552_13385 PF00633 Helix-hairpin-helix motif PF552_13385 PF10576 Iron-sulfur binding domain of endonuclease III PF552_13395 PF05191 Adenylate kinase, active site lid PF552_13410 PF00905 Penicillin binding protein transpeptidase domain PF552_13410 PF03717 Penicillin-binding Protein dimerisation domain PF552_13425 PF02492 CobW/HypB/UreG, nucleotide-binding domain PF552_13430 PF01730 UreF PF552_13435 PF02814 UreE urease accessory protein, N-terminal domain PF552_13435 PF05194 UreE urease accessory protein, C-terminal domain PF552_13440 PF01979 Amidohydrolase family PF552_13440 PF00449 Urease alpha-subunit, N-terminal domain PF552_13445 PF00699 Urease beta subunit PF552_13450 PF00547 Urease, gamma subunit PF552_13455 PF01774 UreD urease accessory protein PF552_13470 PF00463 Isocitrate lyase family PF552_13475 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family PF552_13475 PF03466 LysR substrate binding domain PF552_13480 PF00571 CBS domain PF552_13480 PF03471 Transporter associated domain PF552_13480 PF01595 Cyclin M transmembrane N-terminal domain PF552_13485 PF03600 Citrate transporter PF552_13500 PF00009 Elongation factor Tu GTP binding domain PF552_13505 PF01507 Phosphoadenosine phosphosulfate reductase family PF552_13515 PF14052 Capsule assembly protein Wzi PF552_13520 PF00152 tRNA synthetases class II (D, K and N) PF552_13520 PF01336 OB-fold nucleic acid binding domain PF552_13535 PF00301 Rubredoxin PF552_13540 PF07992 Pyridine nucleotide-disulphide oxidoreductase PF552_13540 PF18113 Rubredoxin binding C-terminal domain PF552_13545 PF00561 alpha/beta hydrolase fold PF552_13550 PF03466 LysR substrate binding domain PF552_13550 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family PF552_13565 PF02503 Polyphosphate kinase middle domain PF552_13565 PF13090 Polyphosphate kinase C-terminal domain 2 PF552_13565 PF17941 Polyphosphate kinase C-terminal domain 1 PF552_13565 PF13089 Polyphosphate kinase N-terminal domain PF552_13570 PF00912 Transglycosylase PF552_13575 PF01694 Rhomboid family PF552_13585 PF00005 ABC transporter PF552_13590 PF13472 GDSL-like Lipase/Acylhydrolase family PF552_13595 PF00484 Carbonic anhydrase PF552_13600 PF00561 alpha/beta hydrolase fold PF552_13610 PF00593 TonB dependent receptor PF552_13610 PF07715 TonB-dependent Receptor Plug Domain PF552_13615 PF01106 NifU-like domain PF552_13615 PF01521 Iron-sulphur cluster biosynthesis PF552_13625 PF00884 Sulfatase PF552_13630 PF03781 Sulfatase-modifying factor enzyme 1 PF552_13650 PF00291 Pyridoxal-phosphate dependent enzyme PF552_13655 PF01384 Phosphate transporter family PF552_13660 PF02310 B12 binding domain PF552_13660 PF02607 B12 binding domain PF552_13660 PF02965 Vitamin B12 dependent methionine synthase, activation domain PF552_13660 PF00809 Pterin binding enzyme PF552_13660 PF02574 Homocysteine S-methyltransferase PF552_13665 PF02780 Transketolase, C-terminal domain PF552_13665 PF02779 Transketolase, pyrimidine binding domain PF552_13670 PF00456 Transketolase, thiamine diphosphate binding domain PF552_13675 PF07690 Major Facilitator Superfamily PF552_13685 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family PF552_13685 PF03466 LysR substrate binding domain PF552_13695 PF01263 Aldose 1-epimerase PF552_13705 PF02311 AraC-like ligand binding domain PF552_13705 PF12833 Helix-turn-helix domain PF552_13710 PF04960 Glutaminase PF552_13715 PF01327 Polypeptide deformylase PF552_13720 PF07690 Major Facilitator Superfamily PF552_13730 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain PF552_13730 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain PF552_13730 PF00205 Thiamine pyrophosphate enzyme, central domain PF552_13735 PF00171 Aldehyde dehydrogenase family PF552_13740 PF01958 Domain of unknown function DUF108 PF552_13740 PF03447 Homoserine dehydrogenase, NAD binding domain PF552_13750 PF12697 Alpha/beta hydrolase family PF552_13760 PF07690 Major Facilitator Superfamily PF552_13765 PF14759 Reductase C-terminal PF552_13765 PF07992 Pyridine nucleotide-disulphide oxidoreductase PF552_13770 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily PF552_13780 PF00355 Rieske [2Fe-2S] domain PF552_13790 PF00355 Rieske [2Fe-2S] domain PF552_13795 PF09339 IclR helix-turn-helix domain PF552_13795 PF01614 Bacterial transcriptional regulator PF552_13810 PF00378 Enoyl-CoA hydratase/isomerase PF552_13820 PF00535 Glycosyl transferase family 2 PF552_13825 PF01522 Polysaccharide deacetylase PF552_13825 PF14883 Hypothetical glycosyl hydrolase family 13 PF552_13830 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase PF552_13835 PF07152 YaeQ protein PF552_13840 PF00375 Sodium:dicarboxylate symporter family PF552_13845 PF07683 Cobalamin synthesis protein cobW C-terminal domain PF552_13845 PF02492 CobW/HypB/UreG, nucleotide-binding domain PF552_13855 PF03061 Thioesterase superfamily PF552_13865 PF02028 BCCT, betaine/carnitine/choline family transporter PF552_13870 PF02028 BCCT, betaine/carnitine/choline family transporter PF552_13875 PF13977 BetI-type transcriptional repressor, C-terminal PF552_13875 PF00440 Bacterial regulatory proteins, tetR family PF552_13880 PF00171 Aldehyde dehydrogenase family PF552_13885 PF05199 GMC oxidoreductase PF552_13885 PF00732 GMC oxidoreductase PF552_13890 PF06039 Malate:quinone oxidoreductase (Mqo) PF552_13900 PF02574 Homocysteine S-methyltransferase PF552_13905 PF13520 Amino acid permease PF552_13930 PF01126 Heme oxygenase PF552_13950 PF07715 TonB-dependent Receptor Plug Domain PF552_13950 PF00593 TonB dependent receptor PF552_13960 PF08281 Sigma-70, region 4 PF552_13960 PF04542 Sigma-70 region 2 PF552_13970 PF00701 Dihydrodipicolinate synthetase family PF552_13975 PF00083 Sugar (and other) transporter PF552_13985 PF08463 EcoEI R protein C-terminal PF552_13985 PF00271 Helicase conserved C-terminal domain PF552_13985 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) PF552_13985 PF04851 Type III restriction enzyme, res subunit PF552_13995 PF02384 N-6 DNA Methylase PF552_13995 PF12161 HsdM N-terminal domain PF552_14040 PF00717 Peptidase S24-like PF552_14045 PF13438 Domain of unknown function (DUF4113) PF552_14045 PF11798 IMS family HHH motif PF552_14045 PF11799 impB/mucB/samB family C-terminal domain PF552_14045 PF00817 impB/mucB/samB family PF552_14130 PF02767 DNA polymerase III beta subunit, central domain PF552_14130 PF02768 DNA polymerase III beta subunit, C-terminal domain PF552_14130 PF00712 DNA polymerase III beta subunit, N-terminal domain PF552_14170 PF05016 ParE toxin of type II toxin-antitoxin system, parDE PF552_14390 PF01695 IstB-like ATP binding protein PF552_14475 PF00929 Exonuclease PF552_14550 PF07690 Major Facilitator Superfamily PF552_14555 PF13533 Biotin-lipoyl like PF552_14560 PF03061 Thioesterase superfamily PF552_14565 PF00490 Delta-aminolevulinic acid dehydratase PF552_14570 PF01266 FAD dependent oxidoreductase PF552_14575 PF01370 NAD dependent epimerase/dehydratase family PF552_14575 PF08338 Domain of unknown function (DUF1731) PF552_14595 PF00149 Calcineurin-like phosphoesterase PF552_14595 PF12320 Type 5 capsule protein repressor C-terminal domain PF552_14605 PF01168 Alanine racemase, N-terminal domain PF552_14610 PF00437 Type II/IV secretion system protein PF552_14615 PF00437 Type II/IV secretion system protein PF552_14620 PF01475 Ferric uptake regulator family PF552_14625 PF04355 SmpA / OmlA family PF552_14630 PF03658 RnfH family Ubiquitin PF552_14640 PF01814 Hemerythrin HHE cation binding domain PF552_14645 PF13230 Glutamine amidotransferases class-II PF552_14655 PF00696 Amino acid kinase family PF552_14660 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II PF552_14660 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III PF552_14660 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain PF552_14660 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I PF552_14665 PF00692 dUTPase PF552_14670 PF00580 UvrD/REP helicase N-terminal domain PF552_14670 PF13361 UvrD-like helicase C-terminal domain PF552_14675 PF00691 OmpA family PF552_14675 PF13488 Glycine zipper PF552_14680 PF01553 Acyltransferase PF552_14690 PF03775 Septum formation inhibitor MinC, C-terminal domain PF552_14695 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain PF552_14700 PF03776 Septum formation topological specificity factor MinE PF552_14710 PF01810 LysE type translocator PF552_14715 PF13491 4TM region of DNA translocase FtsK/SpoIIIE PF552_14715 PF17854 FtsK alpha domain PF552_14715 PF01580 FtsK/SpoIIIE family PF552_14715 PF09397 Ftsk gamma domain PF552_14720 PF07992 Pyridine nucleotide-disulphide oxidoreductase PF552_14725 PF03588 Leucyl/phenylalanyl-tRNA protein transferase PF552_14730 PF04377 Arginine-tRNA-protein transferase, C terminus PF552_14730 PF04376 Arginine-tRNA-protein transferase, N terminus PF552_14735 PF00583 Acetyltransferase (GNAT) family PF552_14750 PF03143 Elongation factor Tu C-terminal domain PF552_14750 PF00009 Elongation factor Tu GTP binding domain PF552_14750 PF03144 Elongation factor Tu domain 2 PF552_14755 PF00679 Elongation factor G C-terminus PF552_14755 PF14492 Elongation Factor G, domain II PF552_14755 PF03764 Elongation factor G, domain IV PF552_14755 PF00009 Elongation factor Tu GTP binding domain PF552_14755 PF03144 Elongation factor Tu domain 2 PF552_14760 PF00177 Ribosomal protein S7p/S5e PF552_14765 PF00164 Ribosomal protein S12/S23 PF552_14775 PF00109 Beta-ketoacyl synthase, N-terminal domain PF552_14775 PF02801 Beta-ketoacyl synthase, C-terminal domain PF552_14780 PF03653 Uncharacterised protein family (UPF0093) PF552_14785 PF05726 Pirin C-terminal cupin domain PF552_14785 PF02678 Pirin PF552_14795 PF00795 Carbon-nitrogen hydrolase PF552_14795 PF02540 NAD synthase PF552_14810 PF00970 Oxidoreductase FAD-binding domain PF552_14810 PF00111 2Fe-2S iron-sulfur cluster binding domain PF552_14810 PF00175 Oxidoreductase NAD-binding domain PF552_14815 PF00171 Aldehyde dehydrogenase family PF552_14820 PF00848 Ring hydroxylating alpha subunit (catalytic domain) PF552_14820 PF00355 Rieske [2Fe-2S] domain PF552_14825 PF07859 alpha/beta hydrolase fold PF552_14830 PF02028 BCCT, betaine/carnitine/choline family transporter PF552_14835 PF00180 Isocitrate/isopropylmalate dehydrogenase PF552_14840 PF03466 LysR substrate binding domain PF552_14840 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family PF552_14870 PF00037 4Fe-4S binding domain PF552_14875 PF01467 Cytidylyltransferase-like PF552_14880 PF01668 SmpB protein PF552_14885 PF03358 NADPH-dependent FMN reductase PF552_14890 PF02578 Multi-copper polyphenol oxidoreductase laccase PF552_14895 PF01479 S4 domain PF552_14895 PF00849 RNA pseudouridylate synthase PF552_14900 PF13525 Outer membrane lipoprotein PF552_14905 PF08275 DNA primase catalytic core, N-terminal domain PF552_14905 PF10410 DnaB-helicase binding domain of primase PF552_14905 PF01807 CHC2 zinc finger PF552_14905 PF08278 DNA primase DnaG DnaB-binding PF552_14910 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain PF552_14910 PF01488 Shikimate / quinate 5-dehydrogenase PF552_14910 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain PF552_14920 PF03550 Outer membrane lipoprotein LolB PF552_14925 PF08544 GHMP kinases C terminal PF552_14925 PF00288 GHMP kinases N terminal domain PF552_14950 PF14572 Phosphoribosyl synthetase-associated domain PF552_14950 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase PF552_14955 PF01386 Ribosomal L25p family PF552_14960 PF01195 Peptidyl-tRNA hydrolase PF552_14965 PF02261 Aspartate decarboxylase PF552_14980 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase PF552_14990 PF02581 Thiamine monophosphate synthase PF552_14990 PF08543 Phosphomethylpyrimidine kinase PF552_14990 PF03070 TENA/THI-4/PQQC family PF552_14995 PF04972 BON domain PF552_14995 PF01476 LysM domain PF552_15000 PF00550 Phosphopantetheine attachment site PF552_15010 PF00698 Acyl transferase domain PF552_15015 PF01783 Ribosomal L32p protein family PF552_15020 PF02620 Large ribosomal RNA subunit accumulation protein YceD PF552_15025 PF04315 Elongation factor P hydroxylase PF552_15030 PF01300 Telomere recombination PF552_15035 PF02616 Segregation and condensation protein ScpA PF552_15040 PF04079 Segregation and condensation complex subunit ScpB PF552_15045 PF00849 RNA pseudouridylate synthase PF552_15045 PF01479 S4 domain PF552_15060 PF00155 Aminotransferase class I and II PF552_15065 PF06968 Biotin and Thiamin Synthesis associated domain PF552_15065 PF04055 Radical SAM superfamily PF552_15065 PF00202 Aminotransferase class-III PF552_15070 PF12697 Alpha/beta hydrolase family PF552_15070 PF08241 Methyltransferase domain PF552_15080 PF00982 Glycosyltransferase family 20 PF552_15085 PF07690 Major Facilitator Superfamily PF552_15090 PF00210 Ferritin-like domain PF552_15095 PF00533 BRCA1 C Terminus (BRCT) domain PF552_15095 PF01653 NAD-dependent DNA ligase adenylation domain PF552_15095 PF03120 NAD-dependent DNA ligase OB-fold domain PF552_15095 PF03119 NAD-dependent DNA ligase C4 zinc finger domain PF552_15095 PF12826 Helix-hairpin-helix motif PF552_15105 PF06470 SMC proteins Flexible Hinge Domain PF552_15105 PF02463 RecF/RecN/SMC N terminal domain PF552_15115 PF01925 Sulfite exporter TauE/SafE PF552_15125 PF03309 Type III pantothenate kinase PF552_15130 PF02881 SRP54-type protein, helical bundle domain PF552_15130 PF02978 Signal peptide binding domain PF552_15130 PF00448 SRP54-type protein, GTPase domain PF552_15140 PF01207 Dihydrouridine synthase (Dus) PF552_15170 PF00692 dUTPase PF552_15185 PF01048 Phosphorylase superfamily PF552_15190 PF10609 NUBPL iron-transfer P-loop NTPase PF552_15200 PF09334 tRNA synthetases class I (M) PF552_15200 PF01588 Putative tRNA binding domain PF552_15225 PF13533 Biotin-lipoyl like PF552_15230 PF00291 Pyridoxal-phosphate dependent enzyme PF552_15245 PF05552 Conserved TM helix PF552_15260 PF00970 Oxidoreductase FAD-binding domain PF552_15260 PF00175 Oxidoreductase NAD-binding domain PF552_15265 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family PF552_15265 PF03466 LysR substrate binding domain PF552_15275 PF00313 'Cold-shock' DNA-binding domain PF552_15285 PF00361 Proton-conducting membrane transporter PF552_15290 PF00361 Proton-conducting membrane transporter PF552_15295 PF00361 Proton-conducting membrane transporter PF552_15295 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus PF552_15300 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L PF552_15305 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 PF552_15310 PF12838 4Fe-4S dicluster domain PF552_15315 PF00146 NADH dehydrogenase PF552_15320 PF04879 Molybdopterin oxidoreductase Fe4S4 domain PF552_15320 PF00384 Molybdopterin oxidoreductase PF552_15320 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region PF552_15325 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region PF552_15325 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit PF552_15325 PF10531 SLBB domain PF552_15335 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit PF552_15335 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit PF552_15340 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit PF552_15345 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 PF552_15350 PF17151 Periplasmic sensor domain PF552_15350 PF00990 Diguanylate cyclase, GGDEF domain PF552_15360 PF00512 His Kinase A (phospho-acceptor) domain PF552_15360 PF00672 HAMP domain PF552_15360 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PF552_15365 PF00072 Response regulator receiver domain PF552_15365 PF00486 Transcriptional regulatory protein, C terminal PF552_15375 PF03477 ATP cone domain PF552_15375 PF02867 Ribonucleotide reductase, barrel domain PF552_15375 PF00317 Ribonucleotide reductase, all-alpha domain PF552_15385 PF00268 Ribonucleotide reductase, small chain PF552_15390 PF00892 EamA-like transporter family PF552_15395 PF01557 Fumarylacetoacetate (FAA) hydrolase family PF552_15400 PF01613 Flavin reductase like domain PF552_15405 PF00296 Luciferase-like monooxygenase PF552_15410 PF00171 Aldehyde dehydrogenase family PF552_15415 PF00293 NUDIX domain PF552_15415 PF09297 NADH pyrophosphatase zinc ribbon domain PF552_15425 PF00083 Sugar (and other) transporter PF552_15440 PF02604 Antitoxin Phd_YefM, type II toxin-antitoxin system PF552_15455 PF02567 Phenazine biosynthesis-like protein PF552_15505 PF01613 Flavin reductase like domain PF552_15510 PF08267 Cobalamin-independent synthase, N-terminal domain PF552_15510 PF01717 Cobalamin-independent synthase, Catalytic domain PF552_15520 PF03466 LysR substrate binding domain PF552_15520 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family PF552_15525 PF01810 LysE type translocator PF552_15530 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family PF552_15530 PF03466 LysR substrate binding domain PF552_15535 PF07690 Major Facilitator Superfamily PF552_15545 PF03466 LysR substrate binding domain PF552_15545 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family PF552_15550 PF14537 Cytochrome c3 PF552_15550 PF00890 FAD binding domain PF552_15560 PF02515 CoA-transferase family III PF552_15565 PF07690 Major Facilitator Superfamily PF552_15570 PF02771 Acyl-CoA dehydrogenase, N-terminal domain PF552_15570 PF02770 Acyl-CoA dehydrogenase, middle domain PF552_15570 PF00441 Acyl-CoA dehydrogenase, C-terminal domain PF552_15575 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family PF552_15575 PF03466 LysR substrate binding domain PF552_15580 PF08240 Alcohol dehydrogenase GroES-like domain PF552_15580 PF00107 Zinc-binding dehydrogenase PF552_15585 PF00962 Adenosine/AMP deaminase PF552_15610 PF02445 Quinolinate synthetase A protein PF552_15615 PF01960 ArgJ family PF552_15620 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain PF552_15620 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain PF552_15625 PF00893 Small Multidrug Resistance protein PF552_15640 PF00394 Multicopper oxidase PF552_15640 PF07731 Multicopper oxidase PF552_15640 PF07732 Multicopper oxidase PF552_15655 PF00834 Ribulose-phosphate 3 epimerase family PF552_15665 PF00756 Putative esterase PF552_15675 PF04445 Putative SAM-dependent methyltransferase PF552_15680 PF00814 Glycoprotease family PF552_15685 PF00132 Bacterial transferase hexapeptide (six repeats) PF552_15690 PF00293 NUDIX domain PF552_15735 PF04715 Anthranilate synthase component I, N terminal region PF552_15735 PF00425 chorismate binding enzyme PF552_15740 PF00155 Aminotransferase class I and II PF552_15745 PF00815 Histidinol dehydrogenase PF552_15750 PF01634 ATP phosphoribosyltransferase PF552_15755 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) PF552_15760 PF01722 BolA-like protein PF552_15765 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein PF552_15770 PF00309 Sigma-54 factor, Activator interacting domain (AID) PF552_15770 PF04963 Sigma-54 factor, core binding domain PF552_15770 PF04552 Sigma-54, DNA binding domain PF552_15815 PF00795 Carbon-nitrogen hydrolase PF552_15825 PF01047 MarR family PF552_15830 PF02566 OsmC-like protein PF552_15835 PF00437 Type II/IV secretion system protein PF552_15855 PF01367 5'-3' exonuclease, C-terminal SAM fold PF552_15855 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain PF552_15855 PF00476 DNA polymerase family A PF552_15855 PF01612 3'-5' exonuclease PF552_15860 PF02325 YGGT family PF552_15865 PF14748 Pyrroline-5-carboxylate reductase dimerisation PF552_15865 PF03807 NADP oxidoreductase coenzyme F420-dependent PF552_15870 PF01171 PP-loop family PF552_15870 PF09179 TilS substrate binding domain PF552_15870 PF11734 TilS substrate C-terminal domain PF552_15875 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit PF552_15880 PF02541 Ppx/GppA phosphatase family PF552_15885 PF00085 Thioredoxin PF552_15890 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain PF552_15890 PF07498 Rho termination factor, N-terminal domain PF552_15890 PF07497 Rho termination factor, RNA-binding domain PF552_15905 PF00216 Bacterial DNA-binding protein PF552_15910 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain PF552_15910 PF01588 Putative tRNA binding domain PF552_15910 PF03147 Ferredoxin-fold anticodon binding domain PF552_15910 PF03484 tRNA synthetase B5 domain PF552_15910 PF03483 B3/4 domain PF552_15915 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain PF552_15915 PF01409 tRNA synthetases class II core domain (F) PF552_15935 PF00453 Ribosomal protein L20 PF552_15940 PF01632 Ribosomal protein L35 PF552_15950 PF07690 Major Facilitator Superfamily PF552_15955 PF09335 SNARE associated Golgi protein PF552_15960 PF00043 Glutathione S-transferase, C-terminal domain PF552_15960 PF02798 Glutathione S-transferase, N-terminal domain PF552_15965 PF00707 Translation initiation factor IF-3, C-terminal domain PF552_15965 PF05198 Translation initiation factor IF-3, N-terminal domain PF552_15970 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain PF552_15970 PF02824 TGS domain PF552_15970 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) PF552_15970 PF03129 Anticodon binding domain PF552_15975 PF00501 AMP-binding enzyme PF552_15975 PF13193 AMP-binding enzyme C-terminal domain PF552_15980 PF04751 Protein of unknown function (DUF615) PF552_15985 PF00381 PTS HPr component phosphorylation site PF552_15990 PF03668 P-loop ATPase protein family PF552_15995 PF02569 Pantoate-beta-alanine ligase PF552_16000 PF02548 Ketopantoate hydroxymethyltransferase PF552_16005 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) PF552_16010 PF01743 Poly A polymerase head domain PF552_16010 PF12627 Probable RNA and SrmB- binding site of polymerase A PF552_16010 PF12626 Polymerase A arginine-rich C-terminus PF552_16020 PF03819 MazG nucleotide pyrophosphohydrolase domain PF552_16030 PF13291 ACT domain PF552_16030 PF04607 Region found in RelA / SpoT proteins PF552_16030 PF02824 TGS domain PF552_16035 PF05958 tRNA (Uracil-5-)-methyltransferase PF552_16045 PF00291 Pyridoxal-phosphate dependent enzyme PF552_16050 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PF552_16050 PF00672 HAMP domain PF552_16050 PF01627 Hpt domain PF552_16050 PF00512 His Kinase A (phospho-acceptor) domain PF552_16050 PF00072 Response regulator receiver domain PF552_16050 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) PF552_16055 PF00378 Enoyl-CoA hydratase/isomerase PF552_16060 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase PF552_16060 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase PF552_16065 PF01261 Xylose isomerase-like TIM barrel PF552_16080 PF00106 short chain dehydrogenase PF552_16085 PF02233 NAD(P) transhydrogenase beta subunit PF552_16090 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch PF552_16095 PF01262 Alanine dehydrogenase/PNT, C-terminal domain PF552_16095 PF05222 Alanine dehydrogenase/PNT, N-terminal domain PF552_16100 PF00892 EamA-like transporter family PF552_16110 PF07690 Major Facilitator Superfamily PF552_16120 PF01434 Peptidase family M41 PF552_16120 PF06480 FtsH Extracellular PF552_16120 PF17862 AAA+ lid domain PF552_16120 PF00004 ATPase family associated with various cellular activities (AAA) PF552_16135 PF02601 Exonuclease VII, large subunit PF552_16135 PF13742 OB-fold nucleic acid binding domain PF552_16150 PF13296 Putative type VI secretion system Rhs element Vgr PF552_16150 PF04717 Type VI secretion system, phage-baseplate injector PF552_16150 PF10106 Uncharacterized protein conserved in bacteria (DUF2345) PF552_16185 PF00593 TonB dependent receptor PF552_16185 PF07715 TonB-dependent Receptor Plug Domain PF552_16190 PF00593 TonB dependent receptor PF552_16190 PF07715 TonB-dependent Receptor Plug Domain PF552_16205 PF01654 Cytochrome bd terminal oxidase subunit I PF552_16210 PF02322 Cytochrome bd terminal oxidase subunit II PF552_16275 PF00589 Phage integrase family PF552_16280 PF01207 Dihydrouridine synthase (Dus) PF552_16290 PF03466 LysR substrate binding domain PF552_16290 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family PF552_16300 PF00899 ThiF family PF552_16305 PF00330 Aconitase family (aconitate hydratase) PF552_16305 PF00694 Aconitase C-terminal domain PF552_16310 PF01026 TatD related DNase PF552_16325 PF00009 Elongation factor Tu GTP binding domain PF552_16325 PF16658 Class II release factor RF3, C-terminal domain PF552_16325 PF03144 Elongation factor Tu domain 2 PF552_16350 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain PF552_16350 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain PF552_16355 PF10369 Small subunit of acetolactate synthase PF552_16360 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain PF552_16360 PF00205 Thiamine pyrophosphate enzyme, central domain PF552_16360 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain PF552_16370 PF09334 tRNA synthetases class I (M) PF552_16370 PF13603 Leucyl-tRNA synthetase, Domain 2 PF552_16370 PF08264 Anticodon-binding domain of tRNA PF552_16370 PF00133 tRNA synthetases class I (I, L, M and V) PF552_16385 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion PF552_16390 PF00005 ABC transporter PF552_16390 PF02687 FtsX-like permease family PF552_16390 PF12704 MacB-like periplasmic core domain PF552_16395 PF02321 Outer membrane efflux protein PF552_16410 PF00929 Exonuclease PF552_16415 PF03193 RsgA GTPase PF552_16425 PF00462 Glutaredoxin PF552_16430 PF02556 Preprotein translocase subunit SecB PF552_16440 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal PF552_16440 PF01926 50S ribosome-binding GTPase PF552_16445 PF13360 PQQ-like domain PF552_16455 PF03129 Anticodon binding domain PF552_16455 PF13393 Histidyl-tRNA synthetase PF552_16460 PF04551 GcpE protein PF552_16465 PF13464 Domain of unknown function (DUF4115) PF552_16475 PF04055 Radical SAM superfamily PF552_16480 PF00334 Nucleoside diphosphate kinase PF552_16485 PF04384 Iron-sulphur cluster assembly PF552_16490 PF01569 PAP2 superfamily PF552_16495 PF00534 Glycosyl transferases group 1 PF552_16495 PF13439 Glycosyltransferase Family 4 PF552_16500 PF17804 Tail specific protease N-terminal domain PF552_16500 PF00595 PDZ domain PF552_16500 PF11818 C-terminal domain of tail specific protease (DUF3340) PF552_16500 PF03572 Peptidase family S41 PF552_16505 PF00933 Glycosyl hydrolase family 3 N terminal domain PF552_16515 PF00561 alpha/beta hydrolase fold PF552_16520 PF00171 Aldehyde dehydrogenase family PF552_16525 PF00171 Aldehyde dehydrogenase family PF552_16530 PF01202 Shikimate kinase PF552_16535 PF02447 GntP family permease PF552_16540 PF01081 KDPG and KHG aldolase PF552_16545 PF00920 Dehydratase family PF552_16550 PF00871 Acetokinase family PF552_16555 PF07085 DRTGG domain PF552_16555 PF01515 Phosphate acetyl/butaryl transferase PF552_16560 PF05681 Fumarate hydratase (Fumerase) PF552_16560 PF05683 Fumarase C-terminus PF552_16575 PF07724 AAA domain (Cdc48 subfamily) PF552_16575 PF06689 ClpX C4-type zinc finger PF552_16575 PF10431 C-terminal, D2-small domain, of ClpB protein PF552_16580 PF00574 Clp protease PF552_16585 PF05697 Bacterial trigger factor protein (TF) PF552_16585 PF05698 Bacterial trigger factor protein (TF) C-terminus PF552_16585 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase PF552_16590 PF00593 TonB dependent receptor PF552_16590 PF07715 TonB-dependent Receptor Plug Domain PF552_16595 PF18331 PKHD-type hydroxylase C-terminal domain PF552_16595 PF13640 2OG-Fe(II) oxygenase superfamily PF552_16600 PF08502 LeuA allosteric (dimerisation) domain PF552_16600 PF00682 HMGL-like PF552_16605 PF00561 alpha/beta hydrolase fold PF552_16610 PF00561 alpha/beta hydrolase fold PF552_16610 PF07021 Methionine biosynthesis protein MetW PF552_16620 PF01725 Ham1 family PF552_16630 PF02416 mttA/Hcf106 family PF552_16635 PF02416 mttA/Hcf106 family PF552_16640 PF00902 Sec-independent protein translocase protein (TatC) PF552_16660 PF01790 Prolipoprotein diacylglyceryl transferase PF552_16675 PF00303 Thymidylate synthase PF552_16680 PF00186 Dihydrofolate reductase PF552_16690 PF01625 Peptide methionine sulfoxide reductase PF552_16700 PF01618 MotA/TolQ/ExbB proton channel family PF552_16710 PF01842 ACT domain PF552_16710 PF00551 Formyl transferase PF552_16720 PF00171 Aldehyde dehydrogenase family PF552_16725 PF00830 Ribosomal L28 family PF552_16730 PF00471 Ribosomal protein L33 PF552_16735 PF00999 Sodium/hydrogen exchanger family PF552_16735 PF02254 TrkA-N domain PF552_16755 PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) PF552_16760 PF13361 UvrD-like helicase C-terminal domain PF552_16760 PF00580 UvrD/REP helicase N-terminal domain PF552_16775 PF01396 Topoisomerase DNA binding C4 zinc finger PF552_16775 PF01131 DNA topoisomerase PF552_16775 PF08272 Topoisomerase I zinc-ribbon-like PF552_16775 PF01751 Toprim domain PF552_16785 PF01638 HxlR-like helix-turn-helix PF552_16790 PF08240 Alcohol dehydrogenase GroES-like domain PF552_16790 PF00107 Zinc-binding dehydrogenase PF552_16795 PF04102 SlyX PF552_16800 PF00005 ABC transporter PF552_16800 PF16326 ABC transporter C-terminal domain PF552_16800 PF12848 ABC transporter PF552_16805 PF01810 LysE type translocator PF552_16810 PF03279 Bacterial lipid A biosynthesis acyltransferase PF552_16820 PF00375 Sodium:dicarboxylate symporter family PF552_16830 PF02774 Semialdehyde dehydrogenase, dimerisation domain PF552_16830 PF01118 Semialdehyde dehydrogenase, NAD binding domain PF552_16850 PF01416 tRNA pseudouridine synthase PF552_16860 PF01176 Translation initiation factor 1A / IF-1 PF552_16875 PF00180 Isocitrate/isopropylmalate dehydrogenase PF552_16885 PF00694 Aconitase C-terminal domain PF552_16890 PF00330 Aconitase family (aconitate hydratase) PF552_16900 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family PF552_16900 PF03466 LysR substrate binding domain PF552_16910 PF00293 NUDIX domain PF552_16915 PF05524 PEP-utilising enzyme, N-terminal PF552_16915 PF00391 PEP-utilising enzyme, mobile domain PF552_16915 PF02896 PEP-utilising enzyme, TIM barrel domain PF552_16915 PF01590 GAF domain PF552_16920 PF00141 Peroxidase PF552_16925 PF12706 Beta-lactamase superfamily domain PF552_16930 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family PF552_16930 PF03466 LysR substrate binding domain PF552_16940 PF02798 Glutathione S-transferase, N-terminal domain PF552_16945 PF13280 WYL domain PF552_16945 PF08279 HTH domain PF552_16950 PF13419 Haloacid dehalogenase-like hydrolase PF552_16955 PF00849 RNA pseudouridylate synthase PF552_16955 PF01479 S4 domain PF552_16960 PF12111 Polyribonucleotide phosphorylase C terminal PF552_16960 PF10150 Ribonuclease E/G family PF552_16960 PF00575 S1 RNA binding domain PF552_16965 PF00501 AMP-binding enzyme PF552_16965 PF13193 AMP-binding enzyme C-terminal domain PF552_16980 PF03466 LysR substrate binding domain PF552_16980 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family PF552_16990 PF06969 HemN C-terminal domain PF552_16990 PF04055 Radical SAM superfamily PF552_17000 PF01554 MatE PF552_17005 PF08028 Acyl-CoA dehydrogenase, C-terminal domain PF552_17005 PF02770 Acyl-CoA dehydrogenase, middle domain PF552_17005 PF02771 Acyl-CoA dehydrogenase, N-terminal domain PF552_17010 PF02771 Acyl-CoA dehydrogenase, N-terminal domain PF552_17010 PF08028 Acyl-CoA dehydrogenase, C-terminal domain PF552_17015 PF03109 ABC1 family PF552_17020 PF01197 Ribosomal protein L31 PF552_17030 PF02537 CrcB-like protein, Camphor Resistance (CrcB) PF552_17040 PF13247 4Fe-4S dicluster domain PF552_17040 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster PF552_17040 PF07992 Pyridine nucleotide-disulphide oxidoreductase PF552_17050 PF03884 DNA gyrase inhibitor YacG PF552_17055 PF00753 Metallo-beta-lactamase superfamily PF552_17060 PF00762 Ferrochelatase PF552_17070 PF01177 Asp/Glu/Hydantoin racemase PF552_17090 PF01206 Sulfurtransferase TusA PF552_17095 PF00571 CBS domain PF552_17095 PF03471 Transporter associated domain PF552_17100 PF00795 Carbon-nitrogen hydrolase PF552_17105 PF01588 Putative tRNA binding domain PF552_17115 PF08334 Type II secretion system (T2SS), protein G PF552_17115 PF07963 Prokaryotic N-terminal methylation motif PF552_17120 PF00482 Type II secretion system (T2SS), protein F PF552_17125 PF17764 3′ DNA-binding domain (3′BD) PF552_17125 PF00271 Helicase conserved C-terminal domain PF552_17125 PF18074 Primosomal protein N C-terminal domain PF552_17125 PF18319 PriA DNA helicase Cys-rich region (CRR) domain PF552_17125 PF00270 DEAD/DEAH box helicase PF552_17130 PF00999 Sodium/hydrogen exchanger family PF552_17130 PF02254 TrkA-N domain PF552_17135 PF01430 Hsp33 protein PF552_17145 PF01556 DnaJ C terminal domain PF552_17145 PF00226 DnaJ domain PF552_17155 PF01544 CorA-like Mg2+ transporter protein PF552_17160 PF00013 KH domain PF552_17160 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain PF552_17160 PF01138 3' exoribonuclease family, domain 1 PF552_17160 PF03725 3' exoribonuclease family, domain 2 PF552_17160 PF00575 S1 RNA binding domain PF552_17165 PF00312 Ribosomal protein S15 PF552_17170 PF00144 Beta-lactamase PF552_17175 PF13538 UvrD-like helicase C-terminal domain PF552_17180 PF00580 UvrD/REP helicase N-terminal domain PF552_17180 PF13361 UvrD-like helicase C-terminal domain PF552_17180 PF12705 PD-(D/E)XK nuclease superfamily PF552_17185 PF17946 RecC C-terminal domain PF552_17195 PF03976 Polyphosphate kinase 2 (PPK2) PF552_17205 PF01209 ubiE/COQ5 methyltransferase family PF552_17215 PF03109 ABC1 family PF552_17220 PF01494 FAD binding domain PF552_17225 PF01502 Phosphoribosyl-AMP cyclohydrolase PF552_17240 PF13244 Domain of unknown function (DUF4040) PF552_17240 PF04039 Domain related to MnhB subunit of Na+/H+ antiporter PF552_17240 PF00361 Proton-conducting membrane transporter PF552_17240 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus PF552_17245 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L PF552_17250 PF00361 Proton-conducting membrane transporter PF552_17255 PF01899 Na+/H+ ion antiporter subunit PF552_17260 PF04066 Multiple resistance and pH regulation protein F (MrpF / PhaF) PF552_17265 PF03334 Na+/H+ antiporter subunit PF552_17270 PF02033 Ribosome-binding factor A PF552_17275 PF00009 Elongation factor Tu GTP binding domain PF552_17275 PF11987 Translation-initiation factor 2 PF552_17275 PF04760 Translation initiation factor IF-2, N-terminal region PF552_17275 PF08364 Bacterial translation initiation factor IF-2 associated region PF552_17280 PF13184 NusA-like KH domain PF552_17280 PF00575 S1 RNA binding domain PF552_17280 PF08529 NusA N-terminal domain PF552_17285 PF02576 RimP N-terminal domain PF552_17285 PF17384 RimP C-terminal SH3 domain PF552_17305 PF03840 Preprotein translocase SecG subunit PF552_17310 PF00121 Triosephosphate isomerase PF552_17320 PF00482 Type II secretion system (T2SS), protein F PF552_17325 PF06750 Bacterial Peptidase A24 N-terminal domain PF552_17325 PF01478 Type IV leader peptidase family PF552_17330 PF01121 Dephospho-CoA kinase PF552_17340 PF00588 SpoU rRNA Methylase family PF552_17340 PF08032 RNA 2'-O ribose methyltransferase substrate binding PF552_17345 PF06865 Pyrimidine/purine nucleoside phosphorylase PF552_17355 PF02463 RecF/RecN/SMC N terminal domain PF552_17360 PF02622 Uncharacterized ACR, COG1678 PF552_17365 PF03652 Holliday junction resolvase PF552_17370 PF13533 Biotin-lipoyl like PF552_17395 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain PF552_17395 PF02805 Metal binding domain of Ada PF552_17395 PF12833 Helix-turn-helix domain PF552_17395 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain PF552_17400 PF01066 CDP-alcohol phosphatidyltransferase PF552_17410 PF01541 GIY-YIG catalytic domain PF552_17410 PF02151 UvrB/uvrC motif PF552_17410 PF08459 UvrC Helix-hairpin-helix N-terminal PF552_17430 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain PF552_17430 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain PF552_17430 PF00378 Enoyl-CoA hydratase/isomerase PF552_17435 PF00108 Thiolase, N-terminal domain PF552_17435 PF02803 Thiolase, C-terminal domain PF552_17450 PF00376 MerR family regulatory protein PF552_17450 PF09278 MerR, DNA binding PF552_17460 PF01323 DSBA-like thioredoxin domain PF552_17475 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PF552_17475 PF00183 Hsp90 protein PF552_17490 PF13726 Na+-H+ antiporter family PF552_17490 PF03553 Na+/H+ antiporter family PF552_17515 PF04997 RNA polymerase Rpb1, domain 1 PF552_17515 PF00623 RNA polymerase Rpb1, domain 2 PF552_17515 PF05000 RNA polymerase Rpb1, domain 4 PF552_17515 PF04998 RNA polymerase Rpb1, domain 5 PF552_17515 PF04983 RNA polymerase Rpb1, domain 3 PF552_17520 PF04563 RNA polymerase beta subunit PF552_17520 PF04561 RNA polymerase Rpb2, domain 2 PF552_17520 PF04565 RNA polymerase Rpb2, domain 3 PF552_17520 PF10385 RNA polymerase beta subunit external 1 domain PF552_17520 PF00562 RNA polymerase Rpb2, domain 6 PF552_17520 PF04560 RNA polymerase Rpb2, domain 7 PF552_17525 PF00542 Ribosomal protein L7/L12 C-terminal domain PF552_17525 PF16320 Ribosomal protein L7/L12 dimerisation domain PF552_17530 PF00466 Ribosomal protein L10 PF552_17535 PF00687 Ribosomal protein L1p/L10e family PF552_17540 PF00298 Ribosomal protein L11, RNA binding domain PF552_17540 PF03946 Ribosomal protein L11, N-terminal domain PF552_17545 PF00467 KOW motif PF552_17545 PF02357 Transcription termination factor nusG PF552_17550 PF00584 SecE/Sec61-gamma subunits of protein translocation complex PF552_17560 PF03144 Elongation factor Tu domain 2 PF552_17560 PF00009 Elongation factor Tu GTP binding domain PF552_17560 PF03143 Elongation factor Tu C-terminal domain PF552_17585 PF04715 Anthranilate synthase component I, N terminal region PF552_17585 PF00425 chorismate binding enzyme PF552_17590 PF13419 Haloacid dehalogenase-like hydrolase PF552_17595 PF12401 Protein of unknown function (DUF2662) PF552_17595 PF00498 FHA domain PF552_17600 PF00263 Bacterial type II and III secretion system protein PF552_17600 PF03958 Bacterial type II/III secretion system short domain PF552_17615 PF00816 H-NS histone family PF552_17640 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain PF552_17640 PF03900 Porphobilinogen deaminase, C-terminal domain PF552_17650 PF07694 5TMR of 5TMR-LYT PF552_17650 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PF552_17650 PF06580 Histidine kinase PF552_17655 PF14698 Argininosuccinate lyase C-terminal PF552_17655 PF00206 Lyase PF552_17660 PF04362 Bacterial Fe(2+) trafficking PF552_17665 PF01895 PhoU domain PF552_17670 PF02321 Outer membrane efflux protein PF552_17675 PF00892 EamA-like transporter family PF552_17690 PF13667 ThiC-associated domain PF552_17690 PF01964 Radical SAM ThiC family PF552_17710 PF00905 Penicillin binding protein transpeptidase domain PF552_17735 PF00916 Sulfate permease family PF552_17735 PF01740 STAS domain PF552_17740 PF00582 Universal stress protein family PF552_17770 PF00665 Integrase core domain PF552_17785 PF00149 Calcineurin-like phosphoesterase PF552_17790 PF01258 Prokaryotic dksA/traR C4-type zinc finger PF552_17795 PF00749 tRNA synthetases class I (E and Q), catalytic domain PF552_17800 PF01098 Cell cycle protein PF552_17805 PF02875 Mur ligase family, glutamate ligase domain PF552_17805 PF08245 Mur ligase middle domain PF552_17815 PF07670 Nucleoside recognition PF552_17815 PF07664 Ferrous iron transport protein B C terminus PF552_17815 PF02421 Ferrous iron transport protein B PF552_17825 PF02899 Phage integrase, N-terminal SAM-like domain PF552_17825 PF00589 Phage integrase family PF552_17830 PF10411 Disulfide bond isomerase protein N-terminus PF552_17830 PF13098 Thioredoxin-like domain PF552_17835 PF01842 ACT domain PF552_17835 PF00742 Homoserine dehydrogenase PF552_17835 PF03447 Homoserine dehydrogenase, NAD binding domain PF552_17840 PF00291 Pyridoxal-phosphate dependent enzyme PF552_17845 PF00768 D-alanyl-D-alanine carboxypeptidase PF552_17850 PF00196 Bacterial regulatory proteins, luxR family PF552_17850 PF00072 Response regulator receiver domain PF552_17855 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PF552_17855 PF00512 His Kinase A (phospho-acceptor) domain PF552_17860 PF02954 Bacterial regulatory protein, Fis family PF552_17860 PF00072 Response regulator receiver domain PF552_17860 PF00158 Sigma-54 interaction domain PF552_17865 PF00595 PDZ domain PF552_17865 PF03572 Peptidase family S41 PF552_17870 PF06415 BPG-independent PGAM N-terminus (iPGM_N) PF552_17870 PF01676 Metalloenzyme superfamily PF552_17875 PF03739 Lipopolysaccharide export system permease LptF/LptG PF552_17885 PF00883 Cytosol aminopeptidase family, catalytic domain PF552_17885 PF02789 Cytosol aminopeptidase family, N-terminal domain PF552_17905 PF00677 Lumazine binding domain PF552_17915 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region PF552_17915 PF01872 RibD C-terminal domain PF552_17920 PF03477 ATP cone domain PF552_17925 PF00909 Ammonium Transporter Family PF552_17930 PF00543 Nitrogen regulatory protein P-II PF552_17955 PF00905 Penicillin binding protein transpeptidase domain PF552_17980 PF00916 Sulfate permease family PF552_17980 PF01740 STAS domain PF552_17985 PF00582 Universal stress protein family PF552_18015 PF00665 Integrase core domain PF552_18040 PF00701 Dihydrodipicolinate synthetase family PF552_18055 PF03573 outer membrane porin, OprD family PF552_18060 PF00719 Inorganic pyrophosphatase PF552_18075 PF00501 AMP-binding enzyme PF552_18075 PF13193 AMP-binding enzyme C-terminal domain PF552_18080 PF03989 DNA gyrase C-terminal domain, beta-propeller PF552_18080 PF00521 DNA gyrase/topoisomerase IV, subunit A PF552_18085 PF07690 Major Facilitator Superfamily PF552_18090 PF03458 UPF0126 domain PF552_18095 PF02810 SEC-C motif PF552_18100 PF03471 Transporter associated domain PF552_18100 PF03741 Integral membrane protein TerC family PF552_18105 PF03641 Possible lysine decarboxylase PF552_18110 PF07690 Major Facilitator Superfamily PF552_18120 PF00817 impB/mucB/samB family PF552_18120 PF11799 impB/mucB/samB family C-terminal domain PF552_18120 PF11798 IMS family HHH motif PF552_18140 PF11842 Domain of unknown function (DUF3362) PF552_18140 PF04055 Radical SAM superfamily PF552_18140 PF08497 Radical SAM N-terminal PF552_18160 PF03358 NADPH-dependent FMN reductase PF552_18170 PF00291 Pyridoxal-phosphate dependent enzyme PF552_18240 PF01327 Polypeptide deformylase PF552_18250 PF02481 DNA recombination-mediator protein A PF552_18250 PF17782 DprA winged helix domain PF552_18255 PF01300 Telomere recombination PF552_18260 PF00892 EamA-like transporter family PF552_18265 PF00440 Bacterial regulatory proteins, tetR family PF552_18270 PF07690 Major Facilitator Superfamily PF552_18280 PF00255 Glutathione peroxidase PF552_18290 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain PF552_18295 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain PF552_18295 PF02874 ATP synthase alpha/beta family, beta-barrel domain PF552_18300 PF00231 ATP synthase PF552_18305 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain PF552_18305 PF02874 ATP synthase alpha/beta family, beta-barrel domain PF552_18305 PF00306 ATP synthase alpha/beta chain, C terminal domain PF552_18310 PF00213 ATP synthase delta (OSCP) subunit PF552_18315 PF00430 ATP synthase B/B' CF(0) PF552_18320 PF00137 ATP synthase subunit C PF552_18325 PF00119 ATP synthase A chain PF552_18345 PF00005 ABC transporter PF552_18350 PF00950 ABC 3 transport family PF552_18355 PF01810 LysE type translocator PF552_18360 PF04261 Dyp-type peroxidase family PF552_18370 PF00390 Malic enzyme, N-terminal domain PF552_18370 PF03949 Malic enzyme, NAD binding domain PF552_18375 PF03485 Arginyl tRNA synthetase N terminal domain PF552_18375 PF00750 tRNA synthetases class I (R) PF552_18375 PF05746 DALR anticodon binding domain PF552_18395 PF02678 Pirin PF552_18395 PF05726 Pirin C-terminal cupin domain PF552_18405 PF03551 Transcriptional regulator PadR-like family PF552_18410 PF13427 Domain of unknown function (DUF4111) PF552_18410 PF01909 Nucleotidyltransferase domain PF552_18415 PF00958 GMP synthase C terminal domain PF552_18415 PF02540 NAD synthase PF552_18415 PF00117 Glutamine amidotransferase class-I PF552_18420 PF04286 Protein of unknown function (DUF445) PF552_18425 PF07681 DoxX PF552_18430 PF09335 SNARE associated Golgi protein PF552_18445 PF13614 AAA domain PF552_18455 PF01722 BolA-like protein PF552_18470 PF01648 4'-phosphopantetheinyl transferase superfamily PF552_18475 PF12697 Alpha/beta hydrolase family PF552_18490 PF00975 Thioesterase domain PF552_18490 PF13193 AMP-binding enzyme C-terminal domain PF552_18490 PF00668 Condensation domain PF552_18490 PF00550 Phosphopantetheine attachment site PF552_18490 PF00501 AMP-binding enzyme PF552_18495 PF16197 Ketoacyl-synthetase C-terminal extension PF552_18495 PF00109 Beta-ketoacyl synthase, N-terminal domain PF552_18495 PF02801 Beta-ketoacyl synthase, C-terminal domain PF552_18495 PF08242 Methyltransferase domain PF552_18495 PF00550 Phosphopantetheine attachment site PF552_18495 PF00975 Thioesterase domain PF552_18495 PF14765 Polyketide synthase dehydratase PF552_18500 PF02771 Acyl-CoA dehydrogenase, N-terminal domain PF552_18500 PF02770 Acyl-CoA dehydrogenase, middle domain PF552_18500 PF00441 Acyl-CoA dehydrogenase, C-terminal domain PF552_18505 PF00501 AMP-binding enzyme PF552_18510 PF00196 Bacterial regulatory proteins, luxR family PF552_18510 PF03472 Autoinducer binding domain PF552_18520 PF00765 Autoinducer synthase PF552_18525 PF07690 Major Facilitator Superfamily PF552_18525 PF00083 Sugar (and other) transporter PF552_18530 PF00378 Enoyl-CoA hydratase/isomerase PF552_18535 PF00378 Enoyl-CoA hydratase/isomerase PF552_18540 PF02771 Acyl-CoA dehydrogenase, N-terminal domain PF552_18540 PF02770 Acyl-CoA dehydrogenase, middle domain PF552_18540 PF00441 Acyl-CoA dehydrogenase, C-terminal domain PF552_18545 PF00501 AMP-binding enzyme PF552_18545 PF13193 AMP-binding enzyme C-terminal domain PF552_18550 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase PF552_18550 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase PF552_18555 PF00171 Aldehyde dehydrogenase family PF552_18565 PF00324 Amino acid permease PF552_18570 PF00324 Amino acid permease PF552_18575 PF01042 Endoribonuclease L-PSP PF552_18580 PF01168 Alanine racemase, N-terminal domain PF552_18580 PF00842 Alanine racemase, C-terminal domain PF552_18585 PF01266 FAD dependent oxidoreductase PF552_18590 PF01037 Lrp/AsnC ligand binding domain PF552_18600 PF07715 TonB-dependent Receptor Plug Domain PF552_18600 PF00593 TonB dependent receptor PF552_18615 PF00849 RNA pseudouridylate synthase PF552_18645 PF00293 NUDIX domain PF552_18665 PF00330 Aconitase family (aconitate hydratase) PF552_18665 PF00694 Aconitase C-terminal domain PF552_18670 PF00285 Citrate synthase, C-terminal domain PF552_18680 PF00392 Bacterial regulatory proteins, gntR family PF552_18680 PF07729 FCD domain PF552_18690 PF00155 Aminotransferase class I and II PF552_18695 PF01565 FAD binding domain PF552_18695 PF09330 D-lactate dehydrogenase, membrane binding PF552_18700 PF01070 FMN-dependent dehydrogenase PF552_18705 PF07729 FCD domain PF552_18705 PF00392 Bacterial regulatory proteins, gntR family PF552_18710 PF02652 L-lactate permease PF552_18715 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III PF552_18715 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I PF552_18715 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II PF552_18715 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain PF552_18720 PF16363 GDP-mannose 4,6 dehydratase PF552_18725 PF00342 Phosphoglucose isomerase PF552_18730 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain PF552_18730 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain PF552_18730 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain PF552_18735 PF00483 Nucleotidyl transferase PF552_18740 PF02719 Polysaccharide biosynthesis protein PF552_18745 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family PF552_18750 PF17836 PglD N-terminal domain PF552_18750 PF14602 Hexapeptide repeat of succinyl-transferase PF552_18750 PF00132 Bacterial transferase hexapeptide (six repeats) PF552_18755 PF02397 Bacterial sugar transferase PF552_18760 PF00534 Glycosyl transferases group 1 PF552_18760 PF13477 Glycosyl transferase 4-like PF552_18770 PF13439 Glycosyltransferase Family 4 PF552_18770 PF00534 Glycosyl transferases group 1 PF552_18785 PF01370 NAD dependent epimerase/dehydratase family PF552_18790 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain PF552_18790 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain PF552_18790 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain PF552_18795 PF18412 Outer-membrane lipoprotein Wza C-terminal domain PF552_18795 PF10531 SLBB domain PF552_18795 PF02563 Polysaccharide biosynthesis/export protein PF552_18800 PF01451 Low molecular weight phosphotyrosine protein phosphatase PF552_18805 PF13614 AAA domain PF552_18805 PF02706 Chain length determinant protein PF552_18805 PF13807 G-rich domain on putative tyrosine kinase PF552_18810 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase PF552_18810 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase PF552_18815 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase PF552_18815 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase PF552_18820 PF03023 Lipid II flippase MurJ PF552_18825 PF01510 N-acetylmuramoyl-L-alanine amidase PF552_18830 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain PF552_18830 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain PF552_18840 PF04185 Phosphoesterase family PF552_18840 PF05506 Domain of unknown function (DUF756) PF552_18850 PF03725 3' exoribonuclease family, domain 2 PF552_18850 PF01138 3' exoribonuclease family, domain 1 PF552_18855 PF00487 Fatty acid desaturase PF552_18860 PF00042 Globin PF552_18860 PF00970 Oxidoreductase FAD-binding domain PF552_18860 PF00175 Oxidoreductase NAD-binding domain PF552_18865 PF00440 Bacterial regulatory proteins, tetR family PF552_18870 PF08360 QacR-like protein, C-terminal region PF552_18870 PF00440 Bacterial regulatory proteins, tetR family PF552_18875 PF01323 DSBA-like thioredoxin domain PF552_18885 PF13419 Haloacid dehalogenase-like hydrolase PF552_18890 PF00106 short chain dehydrogenase PF552_18905 PF00583 Acetyltransferase (GNAT) family PF552_18905 PF00696 Amino acid kinase family PF552_18925 PF09084 NMT1/THI5 like PF552_18930 PF00296 Luciferase-like monooxygenase PF552_18935 PF00528 Binding-protein-dependent transport system inner membrane component PF552_18940 PF00005 ABC transporter PF552_18945 PF08362 YcdC-like protein, C-terminal region PF552_18945 PF00440 Bacterial regulatory proteins, tetR family PF552_18950 PF01048 Phosphorylase superfamily PF552_18960 PF01687 Riboflavin kinase PF552_18960 PF06574 FAD synthetase PF552_18965 PF08264 Anticodon-binding domain of tRNA PF552_18965 PF00133 tRNA synthetases class I (I, L, M and V) PF552_18965 PF06827 Zinc finger found in FPG and IleRS PF552_18970 PF01252 Signal peptidase (SPase) II PF552_18975 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase PF552_19015 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD PF552_19020 PF07859 alpha/beta hydrolase fold PF552_19040 PF03466 LysR substrate binding domain PF552_19040 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family PF552_19045 PF01025 GrpE PF552_19050 PF00012 Hsp70 protein PF552_19070 PF13406 Transglycosylase SLT domain PF552_19075 PF02222 ATP-grasp domain PF552_19075 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain PF552_19080 PF00731 AIR carboxylase PF552_19090 PF01225 Mur ligase family, catalytic domain PF552_19090 PF02875 Mur ligase family, glutamate ligase domain PF552_19090 PF08245 Mur ligase middle domain PF552_19100 PF01569 PAP2 superfamily PF552_19105 PF03741 Integral membrane protein TerC family PF552_19115 PF03738 Glutathionylspermidine synthase preATP-grasp PF552_19120 PF00355 Rieske [2Fe-2S] domain PF552_19125 PF01979 Amidohydrolase family PF552_19130 PF00156 Phosphoribosyl transferase domain PF552_19140 PF13098 Thioredoxin-like domain PF552_19140 PF10411 Disulfide bond isomerase protein N-terminus PF552_19145 PF01545 Cation efflux family PF552_19145 PF16916 Dimerisation domain of Zinc Transporter PF552_19150 PF02583 Metal-sensitive transcriptional repressor PF552_19155 PF01926 50S ribosome-binding GTPase PF552_19155 PF12631 MnmE helical domain PF552_19155 PF10396 GTP-binding protein TrmE N-terminus PF552_19160 PF14849 YidC periplasmic domain PF552_19160 PF02096 60Kd inner membrane protein PF552_19165 PF01809 Putative membrane protein insertion efficiency factor PF552_19170 PF00825 Ribonuclease P PF552_19175 PF00468 Ribosomal protein L34 PF552_19180 PF00756 Putative esterase PF552_19190 PF08240 Alcohol dehydrogenase GroES-like domain PF552_19190 PF00107 Zinc-binding dehydrogenase PF552_19195 PF02583 Metal-sensitive transcriptional repressor PF552_19235 PF03389 MobA/MobL family PF552_19235 PF01443 Viral (Superfamily 1) RNA helicase PF552_19235 PF17841 BID domain of Bartonella effector protein (Bep) PF552_19265 PF05973 Phage derived protein Gp49-like (DUF891)