locus-tag class description PF515_00005 PF00308 Bacterial dnaA protein PF515_00005 PF08299 Bacterial dnaA protein helix-turn-helix PF515_00005 PF11638 DnaA N-terminal domain PF515_00010 PF00712 DNA polymerase III beta subunit, N-terminal domain PF515_00010 PF02767 DNA polymerase III beta subunit, central domain PF515_00010 PF02768 DNA polymerase III beta subunit, C-terminal domain PF515_00015 PF02463 RecF/RecN/SMC N terminal domain PF515_00020 PF00204 DNA gyrase B PF515_00020 PF00986 DNA gyrase B subunit, carboxyl terminus PF515_00020 PF18053 DNA gyrase B subunit insert domain PF515_00020 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PF515_00020 PF01751 Toprim domain PF515_00030 PF09335 SNARE associated Golgi protein PF515_00035 PF00005 ABC transporter PF515_00035 PF12848 ABC transporter PF515_00055 PF01521 Iron-sulphur cluster biosynthesis PF515_00060 PF00561 alpha/beta hydrolase fold PF515_00065 PF03702 Anhydro-N-acetylmuramic acid kinase PF515_00070 PF00579 tRNA synthetases class I (W and Y) PF515_00110 PF00209 Sodium:neurotransmitter symporter family PF515_00120 PF01189 16S rRNA methyltransferase RsmB/F PF515_00120 PF01029 NusB family PF515_00125 PF02911 Formyl transferase, C-terminal domain PF515_00125 PF00551 Formyl transferase PF515_00130 PF00920 Dehydratase family PF515_00145 PF03466 LysR substrate binding domain PF515_00145 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family PF515_00150 PF00860 Permease family PF515_00155 PF00311 Phosphoenolpyruvate carboxylase PF515_00160 PF08361 MAATS-type transcriptional repressor, C-terminal region PF515_00160 PF00440 Bacterial regulatory proteins, tetR family PF515_00165 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion PF515_00170 PF00873 AcrB/AcrD/AcrF family PF515_00180 PF00226 DnaJ domain PF515_00180 PF00684 DnaJ central domain PF515_00180 PF01556 DnaJ C terminal domain PF515_00190 PF01113 Dihydrodipicolinate reductase, N-terminus PF515_00190 PF05173 Dihydrodipicolinate reductase, C-terminus PF515_00200 PF07690 Major Facilitator Superfamily PF515_00205 PF00248 Aldo/keto reductase family PF515_00210 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family PF515_00210 PF03466 LysR substrate binding domain PF515_00225 PF00392 Bacterial regulatory proteins, gntR family PF515_00225 PF00155 Aminotransferase class I and II PF515_00230 PF08240 Alcohol dehydrogenase GroES-like domain PF515_00230 PF00107 Zinc-binding dehydrogenase PF515_00235 PF03352 Methyladenine glycosylase PF515_00250 PF00730 HhH-GPD superfamily base excision DNA repair protein PF515_00250 PF14815 NUDIX domain PF515_00250 PF10576 Iron-sulfur binding domain of endonuclease III PF515_00250 PF00633 Helix-hairpin-helix motif PF515_00265 PF07043 Protein of unknown function (DUF1328) PF515_00270 PF03692 Putative zinc- or iron-chelating domain PF515_00275 PF07995 Glucose / Sorbosone dehydrogenase PF515_00280 PF00004 ATPase family associated with various cellular activities (AAA) PF515_00280 PF16193 AAA C-terminal domain PF515_00280 PF12002 MgsA AAA+ ATPase C terminal PF515_00285 PF01226 Formate/nitrite transporter PF515_00295 PF01259 SAICAR synthetase PF515_00305 PF00701 Dihydrodipicolinate synthetase family PF515_00310 PF00857 Isochorismatase family PF515_00315 PF01758 Sodium Bile acid symporter family PF515_00320 PF01554 MatE PF515_00325 PF04463 Protein of unknown function (DUF523) PF515_00330 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily PF515_00340 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily PF515_00345 PF02798 Glutathione S-transferase, N-terminal domain PF515_00345 PF14497 Glutathione S-transferase, C-terminal domain PF515_00355 PF00324 Amino acid permease PF515_00365 PF07683 Cobalamin synthesis protein cobW C-terminal domain PF515_00365 PF02492 CobW/HypB/UreG, nucleotide-binding domain PF515_00375 PF07702 UTRA domain PF515_00375 PF00392 Bacterial regulatory proteins, gntR family PF515_00380 PF05962 HutD PF515_00385 PF17391 Urocanase N-terminal domain PF515_00385 PF17392 Urocanase C-terminal domain PF515_00385 PF01175 Urocanase Rossmann-like domain PF515_00390 PF00221 Aromatic amino acid lyase PF515_00395 PF00324 Amino acid permease PF515_00400 PF01979 Amidohydrolase family PF515_00405 PF00491 Arginase family PF515_00420 PF01177 Asp/Glu/Hydantoin racemase PF515_00425 PF01380 SIS domain PF515_00430 PF00132 Bacterial transferase hexapeptide (six repeats) PF515_00430 PF14602 Hexapeptide repeat of succinyl-transferase PF515_00430 PF12804 MobA-like NTP transferase domain PF515_00435 PF04608 Phosphatidylglycerophosphatase A PF515_00440 PF02769 AIR synthase related protein, C-terminal domain PF515_00440 PF00586 AIR synthase related protein, N-terminal domain PF515_00445 PF01029 NusB family PF515_00450 PF00885 6,7-dimethyl-8-ribityllumazine synthase PF515_00455 PF00925 GTP cyclohydrolase II PF515_00455 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase PF515_00480 PF02580 D-Tyr-tRNA(Tyr) deacylase PF515_00485 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family PF515_00485 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain PF515_00490 PF00581 Rhodanese-like domain PF515_00495 PF02666 Phosphatidylserine decarboxylase PF515_00500 PF03069 Acetamidase/Formamidase family PF515_00520 PF00512 His Kinase A (phospho-acceptor) domain PF515_00520 PF00989 PAS fold PF515_00520 PF11808 Phosphate regulon sensor protein PhoR PF515_00520 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PF515_00525 PF00072 Response regulator receiver domain PF515_00525 PF00486 Transcriptional regulatory protein, C terminal PF515_00535 PF00106 short chain dehydrogenase PF515_00540 PF01554 MatE PF515_00545 PF00155 Aminotransferase class I and II PF515_00550 PF04286 Protein of unknown function (DUF445) PF515_00565 PF04262 Glutamate-cysteine ligase PF515_00570 PF02600 Disulfide bond formation protein DsbB PF515_00575 PF04717 Type VI secretion system, phage-baseplate injector PF515_00575 PF10106 Uncharacterized protein conserved in bacteria (DUF2345) PF515_00575 PF13296 Putative type VI secretion system Rhs element Vgr PF515_00580 PF01476 LysM domain PF515_00580 PF00877 NlpC/P60 family PF515_00595 PF05728 Uncharacterised protein family (UPF0227) PF515_00600 PF01751 Toprim domain PF515_00600 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PF515_00600 PF00986 DNA gyrase B subunit, carboxyl terminus PF515_00600 PF00204 DNA gyrase B PF515_00605 PF00106 short chain dehydrogenase PF515_00610 PF04115 Ureidoglycolate lyase PF515_00615 PF03561 Allantoicase repeat PF515_00620 PF01494 FAD binding domain PF515_00630 PF00860 Permease family PF515_00635 PF00576 HIUase/Transthyretin family PF515_00665 PF02683 Cytochrome C biogenesis protein transmembrane region PF515_00665 PF11412 Disulphide bond corrector protein DsbC PF515_00670 PF00990 Diguanylate cyclase, GGDEF domain PF515_00670 PF07694 5TMR of 5TMR-LYT PF515_00675 PF07859 alpha/beta hydrolase fold PF515_00685 PF03960 ArsC family PF515_00690 PF03372 Endonuclease/Exonuclease/phosphatase family PF515_00695 PF00156 Phosphoribosyl transferase domain PF515_00700 PF00593 TonB dependent receptor PF515_00700 PF07715 TonB-dependent Receptor Plug Domain PF515_00710 PF02951 Prokaryotic glutathione synthetase, N-terminal domain PF515_00710 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain PF515_00715 PF03033 Glycosyltransferase family 28 N-terminal domain PF515_00715 PF04101 Glycosyltransferase family 28 C-terminal domain PF515_00720 PF08245 Mur ligase middle domain PF515_00720 PF02875 Mur ligase family, glutamate ligase domain PF515_00720 PF01225 Mur ligase family, catalytic domain PF515_00725 PF01820 D-ala D-ala ligase N-terminus PF515_00725 PF07478 D-ala D-ala ligase C-terminus PF515_00730 PF08478 POTRA domain, FtsQ-type PF515_00730 PF03799 Cell division protein FtsQ PF515_00735 PF02491 SHS2 domain inserted in FTSA PF515_00740 PF00091 Tubulin/FtsZ family, GTPase domain PF515_00740 PF12327 FtsZ family, C-terminal domain PF515_00745 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase PF515_00755 PF01551 Peptidase family M23 PF515_00760 PF00456 Transketolase, thiamine diphosphate binding domain PF515_00760 PF17831 Pyruvate dehydrogenase E1 component middle domain PF515_00765 PF02817 e3 binding domain PF515_00765 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) PF515_00765 PF00364 Biotin-requiring enzyme PF515_00775 PF01169 Uncharacterized protein family UPF0016 PF515_00780 PF00593 TonB dependent receptor PF515_00780 PF07715 TonB-dependent Receptor Plug Domain PF515_00785 PF00258 Flavodoxin PF515_00785 PF01613 Flavin reductase like domain PF515_00790 PF03692 Putative zinc- or iron-chelating domain PF515_00795 PF00478 IMP dehydrogenase / GMP reductase domain PF515_00795 PF00571 CBS domain PF515_00800 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III PF515_00800 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I PF515_00800 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II PF515_00800 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain PF515_00805 PF01243 Pyridoxamine 5'-phosphate oxidase PF515_00805 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region PF515_00810 PF17768 RecJ OB domain PF515_00810 PF02272 DHHA1 domain PF515_00810 PF01368 DHH family PF515_00830 PF00724 NADH:flavin oxidoreductase / NADH oxidase family PF515_00835 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) PF515_00840 PF04452 RNA methyltransferase PF515_00845 PF00924 Mechanosensitive ion channel PF515_00855 PF13193 AMP-binding enzyme C-terminal domain PF515_00855 PF00501 AMP-binding enzyme PF515_00855 PF16177 Acetyl-coenzyme A synthetase N-terminus PF515_00860 PF00857 Isochorismatase family PF515_00865 PF01037 Lrp/AsnC ligand binding domain PF515_00870 PF00872 Transposase, Mutator family PF515_00875 PF00296 Luciferase-like monooxygenase PF515_00880 PF03358 NADPH-dependent FMN reductase PF515_00885 PF00072 Response regulator receiver domain PF515_00885 PF00196 Bacterial regulatory proteins, luxR family PF515_00895 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PF515_00895 PF00672 HAMP domain PF515_00895 PF00072 Response regulator receiver domain PF515_00895 PF01627 Hpt domain PF515_00895 PF00512 His Kinase A (phospho-acceptor) domain PF515_00900 PF04341 Protein of unknown function, DUF485 PF515_00905 PF00474 Sodium:solute symporter family PF515_00915 PF02028 BCCT, betaine/carnitine/choline family transporter PF515_00925 PF00990 Diguanylate cyclase, GGDEF domain PF515_00935 PF00005 ABC transporter PF515_00935 PF17755 UvrA DNA-binding domain PF515_00935 PF17760 UvrA interaction domain PF515_00940 PF16925 Tetracyclin repressor-like, C-terminal domain PF515_00940 PF00440 Bacterial regulatory proteins, tetR family PF515_00945 PF08240 Alcohol dehydrogenase GroES-like domain PF515_00945 PF00107 Zinc-binding dehydrogenase PF515_00955 PF06942 GlpM protein PF515_00960 PF08543 Phosphomethylpyrimidine kinase PF515_00960 PF02581 Thiamine monophosphate synthase PF515_00960 PF03070 TENA/THI-4/PQQC family PF515_00970 PF07690 Major Facilitator Superfamily PF515_00975 PF00436 Single-strand binding protein family PF515_00985 PF03591 AzlC protein PF515_00995 PF00324 Amino acid permease PF515_01000 PF00392 Bacterial regulatory proteins, gntR family PF515_01000 PF00155 Aminotransferase class I and II PF515_01005 PF00202 Aminotransferase class-III PF515_01010 PF00171 Aldehyde dehydrogenase family PF515_01015 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family PF515_01020 PF00857 Isochorismatase family PF515_01025 PF02678 Pirin PF515_01025 PF05726 Pirin C-terminal cupin domain PF515_01030 PF01593 Flavin containing amine oxidoreductase PF515_01050 PF07690 Major Facilitator Superfamily PF515_01055 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family PF515_01055 PF03466 LysR substrate binding domain PF515_01075 PF00248 Aldo/keto reductase family PF515_01080 PF02311 AraC-like ligand binding domain PF515_01080 PF12833 Helix-turn-helix domain PF515_01110 PF01638 HxlR-like helix-turn-helix PF515_01115 PF02525 Flavodoxin-like fold PF515_01135 PF02705 K+ potassium transporter PF515_01160 PF00230 Major intrinsic protein PF515_01175 PF00977 Histidine biosynthesis protein PF515_01180 PF01636 Phosphotransferase enzyme family PF515_01195 PF03992 Antibiotic biosynthesis monooxygenase PF515_01210 PF00977 Histidine biosynthesis protein PF515_01225 PF00117 Glutamine amidotransferase class-I PF515_01230 PF00475 Imidazoleglycerol-phosphate dehydratase PF515_01250 PF00583 Acetyltransferase (GNAT) family PF515_01255 PF02550 Acetyl-CoA hydrolase/transferase N-terminal domain PF515_01255 PF13336 Acetyl-CoA hydrolase/transferase C-terminal domain PF515_01265 PF00672 HAMP domain PF515_01265 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PF515_01265 PF00512 His Kinase A (phospho-acceptor) domain PF515_01270 PF00486 Transcriptional regulatory protein, C terminal PF515_01270 PF00072 Response regulator receiver domain PF515_01275 PF00575 S1 RNA binding domain PF515_01275 PF17674 HHH domain PF515_01275 PF09371 Tex-like protein N-terminal domain PF515_01275 PF16921 Tex protein YqgF-like domain PF515_01280 PF01740 STAS domain PF515_01280 PF00916 Sulfate permease family PF515_01285 PF00106 short chain dehydrogenase PF515_01290 PF01053 Cys/Met metabolism PLP-dependent enzyme PF515_01295 PF00005 ABC transporter PF515_01295 PF12848 ABC transporter PF515_01320 PF04191 Phospholipid methyltransferase PF515_01340 PF00529 HlyD membrane-fusion protein of T1SS PF515_01340 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion PF515_01345 PF00873 AcrB/AcrD/AcrF family PF515_01350 PF01545 Cation efflux family PF515_01380 PF00324 Amino acid permease PF515_01395 PF00749 tRNA synthetases class I (E and Q), catalytic domain PF515_01410 PF01795 MraW methylase family PF515_01420 PF00905 Penicillin binding protein transpeptidase domain PF515_01420 PF03717 Penicillin-binding Protein dimerisation domain PF515_01425 PF08245 Mur ligase middle domain PF515_01425 PF02875 Mur ligase family, glutamate ligase domain PF515_01425 PF01225 Mur ligase family, catalytic domain PF515_01430 PF08245 Mur ligase middle domain PF515_01430 PF02875 Mur ligase family, glutamate ligase domain PF515_01430 PF01225 Mur ligase family, catalytic domain PF515_01435 PF00953 Glycosyl transferase family 4 PF515_01445 PF13847 Methyltransferase domain PF515_01450 PF00905 Penicillin binding protein transpeptidase domain PF515_01450 PF00912 Transglycosylase PF515_01450 PF17092 Penicillin-binding protein OB-like domain PF515_01455 PF11104 Type IV pilus assembly protein PilM; PF515_01460 PF05137 Fimbrial assembly protein (PilN) PF515_01465 PF04350 Pilus assembly protein, PilO PF515_01475 PF00263 Bacterial type II and III secretion system protein PF515_01475 PF03958 Bacterial type II/III secretion system short domain PF515_01475 PF07660 Secretin and TonB N terminus short domain PF515_01475 PF11741 AMIN domain PF515_01480 PF01202 Shikimate kinase PF515_01485 PF01761 3-dehydroquinate synthase PF515_01495 PF04898 Glutamate synthase central domain PF515_01495 PF01645 Conserved region in glutamate synthase PF515_01495 PF01493 GXGXG motif PF515_01495 PF00310 Glutamine amidotransferases class-II PF515_01500 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster PF515_01500 PF07992 Pyridine nucleotide-disulphide oxidoreductase PF515_01510 PF04011 LemA family PF515_01515 PF04536 TPM domain PF515_01535 PF15864 Protein glycosylation ligase PF515_01535 PF04932 O-Antigen ligase PF515_01535 PF11846 Virulence factor membrane-bound polymerase, C-terminal PF515_01540 PF00210 Ferritin-like domain PF515_01545 PF04324 BFD-like [2Fe-2S] binding domain PF515_01550 PF01042 Endoribonuclease L-PSP PF515_01555 PF13291 ACT domain PF515_01555 PF02824 TGS domain PF515_01555 PF04607 Region found in RelA / SpoT proteins PF515_01565 PF01192 RNA polymerase Rpb6 PF515_01570 PF00625 Guanylate kinase PF515_01575 PF02401 LytB protein PF515_01615 PF00886 Ribosomal protein S16 PF515_01620 PF01782 RimM N-terminal domain PF515_01620 PF05239 PRC-barrel domain PF515_01625 PF01746 tRNA (Guanine-1)-methyltransferase PF515_01630 PF01245 Ribosomal protein L19 PF515_01635 PF00561 alpha/beta hydrolase fold PF515_01640 PF03280 Proteobacterial lipase chaperone protein PF515_01645 PF16198 tRNA pseudouridylate synthase B C-terminal domain PF515_01645 PF09157 Pseudouridine synthase II TruB, C-terminal PF515_01645 PF01509 TruB family pseudouridylate synthase (N terminal domain) PF515_01650 PF01925 Sulfite exporter TauE/SafE PF515_01660 PF00892 EamA-like transporter family PF515_01665 PF00892 EamA-like transporter family PF515_01670 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain PF515_01670 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain PF515_01675 PF02913 FAD linked oxidases, C-terminal domain PF515_01675 PF01565 FAD binding domain PF515_01685 PF03992 Antibiotic biosynthesis monooxygenase PF515_01690 PF02525 Flavodoxin-like fold PF515_01700 PF07690 Major Facilitator Superfamily PF515_01705 PF12805 FUSC-like inner membrane protein yccS PF515_01710 PF00080 Copper/zinc superoxide dismutase (SODC) PF515_01715 PF01594 AI-2E family transporter PF515_01720 PF13614 AAA domain PF515_01750 PF00324 Amino acid permease PF515_01755 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain PF515_01755 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase PF515_01760 PF00202 Aminotransferase class-III PF515_01765 PF04958 Arginine N-succinyltransferase beta subunit PF515_01770 PF00171 Aldehyde dehydrogenase family PF515_01775 PF04996 Succinylarginine dihydrolase PF515_01780 PF04952 Succinylglutamate desuccinylase / Aspartoacylase family PF515_01795 PF00082 Subtilase family PF515_01795 PF05922 Peptidase inhibitor I9 PF515_01810 PF03466 LysR substrate binding domain PF515_01810 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family PF515_01815 PF00892 EamA-like transporter family PF515_01825 PF02092 Glycyl-tRNA synthetase beta subunit PF515_01825 PF05746 DALR anticodon binding domain PF515_01830 PF02091 Glycyl-tRNA synthetase alpha subunit PF515_01855 PF00571 CBS domain PF515_01860 PF04024 PspC domain PF515_01870 PF00441 Acyl-CoA dehydrogenase, C-terminal domain PF515_01870 PF12806 Acetyl-CoA dehydrogenase C-terminal like PF515_01870 PF02770 Acyl-CoA dehydrogenase, middle domain PF515_01870 PF02771 Acyl-CoA dehydrogenase, N-terminal domain PF515_01880 PF08501 Shikimate dehydrogenase substrate binding domain PF515_01880 PF01488 Shikimate / quinate 5-dehydrogenase PF515_01880 PF18317 Shikimate 5'-dehydrogenase C-terminal domain PF515_01885 PF01218 Coproporphyrinogen III oxidase PF515_01890 PF00925 GTP cyclohydrolase II PF515_01895 PF02780 Transketolase, C-terminal domain PF515_01895 PF02779 Transketolase, pyrimidine binding domain PF515_01895 PF13292 1-deoxy-D-xylulose-5-phosphate synthase PF515_01900 PF00459 Inositol monophosphatase family PF515_01905 PF03880 DbpA RNA binding domain PF515_01905 PF00271 Helicase conserved C-terminal domain PF515_01905 PF12343 Cold shock protein DEAD box A PF515_01905 PF00270 DEAD/DEAH box helicase PF515_01915 PF00005 ABC transporter PF515_01920 PF02405 Permease MlaE PF515_01930 PF05494 MlaC protein PF515_01940 PF01544 CorA-like Mg2+ transporter protein PF515_01945 PF03641 Possible lysine decarboxylase PF515_01950 PF00293 NUDIX domain PF515_01955 PF00156 Phosphoribosyl transferase domain PF515_01960 PF00270 DEAD/DEAH box helicase PF515_01960 PF17191 RecG wedge domain PF515_01960 PF00271 Helicase conserved C-terminal domain PF515_01975 PF01553 Acyltransferase PF515_01985 PF00375 Sodium:dicarboxylate symporter family PF515_01995 PF01926 50S ribosome-binding GTPase PF515_02000 PF02082 Transcriptional regulator PF515_02005 PF00970 Oxidoreductase FAD-binding domain PF515_02005 PF00042 Globin PF515_02005 PF00175 Oxidoreductase NAD-binding domain PF515_02010 PF05872 Bacterial protein of unknown function (DUF853) PF515_02015 PF01053 Cys/Met metabolism PLP-dependent enzyme PF515_02020 PF00117 Glutamine amidotransferase class-I PF515_02025 PF00338 Ribosomal protein S10p/S20e PF515_02030 PF00297 Ribosomal protein L3 PF515_02035 PF00573 Ribosomal protein L4/L1 family PF515_02040 PF00276 Ribosomal protein L23 PF515_02045 PF00181 Ribosomal Proteins L2, RNA binding domain PF515_02045 PF03947 Ribosomal Proteins L2, C-terminal domain PF515_02050 PF00203 Ribosomal protein S19 PF515_02055 PF00237 Ribosomal protein L22p/L17e PF515_02065 PF00252 Ribosomal protein L16p/L10e PF515_02070 PF00831 Ribosomal L29 protein PF515_02075 PF00366 Ribosomal protein S17 PF515_02080 PF00238 Ribosomal protein L14p/L23e PF515_02085 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 PF515_02085 PF00467 KOW motif PF515_02090 PF00281 Ribosomal protein L5 PF515_02090 PF00673 ribosomal L5P family C-terminus PF515_02095 PF00253 Ribosomal protein S14p/S29e PF515_02100 PF00410 Ribosomal protein S8 PF515_02105 PF00347 Ribosomal protein L6 PF515_02110 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast PF515_02115 PF03719 Ribosomal protein S5, C-terminal domain PF515_02115 PF00333 Ribosomal protein S5, N-terminal domain PF515_02120 PF00327 Ribosomal protein L30p/L7e PF515_02125 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A PF515_02130 PF00344 SecY translocase PF515_02135 PF00444 Ribosomal protein L36 PF515_02140 PF00416 Ribosomal protein S13/S18 PF515_02145 PF00411 Ribosomal protein S11 PF515_02150 PF00163 Ribosomal protein S4/S9 N-terminal domain PF515_02150 PF01479 S4 domain PF515_02155 PF01000 RNA polymerase Rpb3/RpoA insert domain PF515_02155 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain PF515_02155 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain PF515_02160 PF01196 Ribosomal protein L17 PF515_02165 PF00743 Flavin-binding monooxygenase-like PF515_02170 PF00441 Acyl-CoA dehydrogenase, C-terminal domain PF515_02170 PF02770 Acyl-CoA dehydrogenase, middle domain PF515_02170 PF02771 Acyl-CoA dehydrogenase, N-terminal domain PF515_02175 PF03937 Flavinator of succinate dehydrogenase PF515_02205 PF09526 Probable metal-binding protein (DUF2387) PF515_02210 PF01432 Peptidase family M3 PF515_02215 PF08461 Ribonuclease R winged-helix domain PF515_02215 PF08206 Ribonuclease B OB domain PF515_02215 PF00773 RNB domain PF515_02215 PF00575 S1 RNA binding domain PF515_02215 PF17876 Cold shock domain PF515_02260 PF01557 Fumarylacetoacetate (FAA) hydrolase family PF515_02265 PF12833 Helix-turn-helix domain PF515_02270 PF00892 EamA-like transporter family PF515_02275 PF03631 Virulence factor BrkB PF515_02280 PF03358 NADPH-dependent FMN reductase PF515_02305 PF02130 Uncharacterized protein family UPF0054 PF515_02310 PF02562 PhoH-like protein PF515_02315 PF00919 Uncharacterized protein family UPF0004 PF515_02315 PF04055 Radical SAM superfamily PF515_02315 PF01938 TRAM domain PF515_02320 PF01551 Peptidase family M23 PF515_02320 PF10145 Phage-related minor tail protein PF515_02320 PF01464 Transglycosylase SLT domain PF515_02330 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain PF515_02330 PF00056 lactate/malate dehydrogenase, NAD binding domain PF515_02350 PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ PF515_02355 PF01066 CDP-alcohol phosphatidyltransferase PF515_02400 PF00441 Acyl-CoA dehydrogenase, C-terminal domain PF515_02400 PF02770 Acyl-CoA dehydrogenase, middle domain PF515_02400 PF02771 Acyl-CoA dehydrogenase, N-terminal domain PF515_02405 PF00440 Bacterial regulatory proteins, tetR family PF515_02405 PF17932 Tetracyclin repressor-like, C-terminal domain PF515_02420 PF01039 Carboxyl transferase domain PF515_02425 PF02771 Acyl-CoA dehydrogenase, N-terminal domain PF515_02425 PF02770 Acyl-CoA dehydrogenase, middle domain PF515_02425 PF00441 Acyl-CoA dehydrogenase, C-terminal domain PF515_02435 PF00289 Biotin carboxylase, N-terminal domain PF515_02435 PF00364 Biotin-requiring enzyme PF515_02435 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain PF515_02435 PF02785 Biotin carboxylase C-terminal domain PF515_02445 PF04386 Stringent starvation protein B PF515_02450 PF00043 Glutathione S-transferase, C-terminal domain PF515_02450 PF13417 Glutathione S-transferase, N-terminal domain PF515_02455 PF00380 Ribosomal protein S9/S16 PF515_02460 PF00572 Ribosomal protein L13 PF515_02465 PF04166 Pyridoxal phosphate biosynthetic protein PdxA PF515_02470 PF00398 Ribosomal RNA adenine dimethylase PF515_02475 PF00149 Calcineurin-like phosphoesterase PF515_02495 PF16360 GTP-binding GTPase Middle Region PF515_02495 PF13167 GTP-binding GTPase N-terminal PF515_02495 PF01926 50S ribosome-binding GTPase PF515_02505 PF13091 PLD-like domain PF515_02510 PF10518 TAT (twin-arginine translocation) pathway signal sequence PF515_02510 PF00149 Calcineurin-like phosphoesterase PF515_02515 PF01389 OmpA-like transmembrane domain PF515_02515 PF00691 OmpA family PF515_02520 PF00990 Diguanylate cyclase, GGDEF domain PF515_02520 PF17152 Periplasmic sensor domain PF515_02555 PF07992 Pyridine nucleotide-disulphide oxidoreductase PF515_02555 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain PF515_02565 PF00753 Metallo-beta-lactamase superfamily PF515_02565 PF04273 Putative phosphatase (DUF442) PF515_02570 PF00561 alpha/beta hydrolase fold PF515_02575 PF00085 Thioredoxin PF515_02580 PF03061 Thioesterase superfamily PF515_02590 PF04461 Protein of unknown function (DUF520) PF515_02600 PF01266 FAD dependent oxidoreductase PF515_02600 PF05430 S-adenosyl-L-methionine-dependent methyltransferase PF515_02610 PF03795 YCII-related domain PF515_02615 PF04279 Intracellular septation protein A PF515_02620 PF02811 PHP domain PF515_02625 PF01062 Bestrophin, RFP-TM, chloride channel PF515_02630 PF04002 RadC-like JAB domain PF515_02635 PF04127 DNA / pantothenate metabolism flavoprotein PF515_02635 PF02441 Flavoprotein PF515_02640 PF07549 SecD/SecF GG Motif PF515_02640 PF02355 Protein export membrane protein PF515_02645 PF07549 SecD/SecF GG Motif PF515_02645 PF13721 SecD export protein N-terminal TM region PF515_02645 PF02355 Protein export membrane protein PF515_02650 PF02699 Preprotein translocase subunit PF515_02655 PF01702 Queuine tRNA-ribosyltransferase PF515_02670 PF02547 Queuosine biosynthesis protein PF515_02680 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PF515_02680 PF00512 His Kinase A (phospho-acceptor) domain PF515_02680 PF07689 KaiB domain PF515_02685 PF08335 GlnD PII-uridylyltransferase PF515_02685 PF03710 Glutamate-ammonia ligase adenylyltransferase PF515_02690 PF01063 Amino-transferase class IV PF515_02705 PF01522 Polysaccharide deacetylase PF515_02710 PF00535 Glycosyl transferase family 2 PF515_02715 PF00534 Glycosyl transferases group 1 PF515_02715 PF13439 Glycosyltransferase Family 4 PF515_02740 PF17102 Stealth protein CR3, conserved region 3 PF515_02740 PF17101 Stealth protein CR1, conserved region 1 PF515_02740 PF11380 Stealth protein CR2, conserved region 2 PF515_02745 PF02938 GAD domain PF515_02745 PF00152 tRNA synthetases class II (D, K and N) PF515_02745 PF01336 OB-fold nucleic acid binding domain PF515_02755 PF07715 TonB-dependent Receptor Plug Domain PF515_02755 PF00593 TonB dependent receptor PF515_02775 PF06146 Phosphate-starvation-inducible E PF515_02780 PF00043 Glutathione S-transferase, C-terminal domain PF515_02780 PF02798 Glutathione S-transferase, N-terminal domain PF515_02785 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family PF515_02785 PF03466 LysR substrate binding domain PF515_02790 PF00441 Acyl-CoA dehydrogenase, C-terminal domain PF515_02790 PF12806 Acetyl-CoA dehydrogenase C-terminal like PF515_02790 PF02771 Acyl-CoA dehydrogenase, N-terminal domain PF515_02790 PF02770 Acyl-CoA dehydrogenase, middle domain PF515_02795 PF12806 Acetyl-CoA dehydrogenase C-terminal like PF515_02795 PF00441 Acyl-CoA dehydrogenase, C-terminal domain PF515_02795 PF02771 Acyl-CoA dehydrogenase, N-terminal domain PF515_02795 PF02770 Acyl-CoA dehydrogenase, middle domain PF515_02805 PF00672 HAMP domain PF515_02805 PF00512 His Kinase A (phospho-acceptor) domain PF515_02805 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PF515_02810 PF00486 Transcriptional regulatory protein, C terminal PF515_02810 PF00072 Response regulator receiver domain PF515_02815 PF02696 Uncharacterized ACR, YdiU/UPF0061 family PF515_02835 PF01923 Cobalamin adenosyltransferase PF515_02840 PF07715 TonB-dependent Receptor Plug Domain PF515_02840 PF00593 TonB dependent receptor PF515_02845 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase PF515_02850 PF00291 Pyridoxal-phosphate dependent enzyme PF515_02875 PF00290 Tryptophan synthase alpha chain PF515_02880 PF01039 Carboxyl transferase domain PF515_02885 PF08245 Mur ligase middle domain PF515_02885 PF02875 Mur ligase family, glutamate ligase domain PF515_02900 PF00753 Metallo-beta-lactamase superfamily PF515_02905 PF10417 C-terminal domain of 1-Cys peroxiredoxin PF515_02905 PF00578 AhpC/TSA family PF515_02910 PF07516 SecA Wing and Scaffold domain PF515_02910 PF02810 SEC-C motif PF515_02910 PF07517 SecA DEAD-like domain PF515_02910 PF01043 SecA preprotein cross-linking domain PF515_02920 PF07690 Major Facilitator Superfamily PF515_02920 PF00083 Sugar (and other) transporter PF515_02925 PF03006 Haemolysin-III related PF515_02950 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain PF515_02950 PF00378 Enoyl-CoA hydratase/isomerase PF515_02950 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain PF515_02955 PF02803 Thiolase, C-terminal domain PF515_02955 PF00108 Thiolase, N-terminal domain PF515_02960 PF02311 AraC-like ligand binding domain PF515_02960 PF12833 Helix-turn-helix domain PF515_02965 PF02515 CoA-transferase family III PF515_02970 PF04966 Carbohydrate-selective porin, OprB family PF515_02975 PF01011 PQQ enzyme repeat PF515_02980 PF01077 Nitrite and sulphite reductase 4Fe-4S domain PF515_02980 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain PF515_02990 PF00893 Small Multidrug Resistance protein PF515_03000 PF00108 Thiolase, N-terminal domain PF515_03000 PF02803 Thiolase, C-terminal domain PF515_03010 PF13505 Outer membrane protein beta-barrel domain PF515_03010 PF00691 OmpA family PF515_03020 PF01139 tRNA-splicing ligase RtcB PF515_03025 PF00324 Amino acid permease PF515_03030 PF08468 Methyltransferase small domain N-terminal PF515_03030 PF05175 Methyltransferase small domain PF515_03035 PF00860 Permease family PF515_03040 PF00679 Elongation factor G C-terminus PF515_03040 PF03144 Elongation factor Tu domain 2 PF515_03040 PF00009 Elongation factor Tu GTP binding domain PF515_03045 PF01741 Large-conductance mechanosensitive channel, MscL PF515_03060 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain PF515_03060 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain PF515_03060 PF06827 Zinc finger found in FPG and IleRS PF515_03065 PF02245 Methylpurine-DNA glycosylase (MPG) PF515_03085 PF00724 NADH:flavin oxidoreductase / NADH oxidase family PF515_03100 PF10411 Disulfide bond isomerase protein N-terminus PF515_03100 PF13098 Thioredoxin-like domain PF515_03105 PF01571 Aminomethyltransferase folate-binding domain PF515_03115 PF04343 Protein of unknown function, DUF488 PF515_03120 PF03831 PhnA domain PF515_03120 PF08274 PhnA Zinc-Ribbon PF515_03125 PF07411 Domain of unknown function (DUF1508) PF515_03130 PF03129 Anticodon binding domain PF515_03130 PF04073 Aminoacyl-tRNA editing domain PF515_03130 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) PF515_03135 PF00873 AcrB/AcrD/AcrF family PF515_03150 PF00072 Response regulator receiver domain PF515_03155 PF00072 Response regulator receiver domain PF515_03160 PF01584 CheW-like domain PF515_03165 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain PF515_03165 PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term PF515_03170 PF01584 CheW-like domain PF515_03170 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PF515_03170 PF01627 Hpt domain PF515_03170 PF00072 Response regulator receiver domain PF515_03180 PF07687 Peptidase dimerisation domain PF515_03180 PF01546 Peptidase family M20/M25/M40 PF515_03185 PF08085 Entericidin EcnA/B family PF515_03195 PF04304 Protein of unknown function (DUF454) PF515_03200 PF17969 L,D-transpeptidase C-terminal domain PF515_03200 PF03734 L,D-transpeptidase catalytic domain PF515_03240 PF00175 Oxidoreductase NAD-binding domain PF515_03240 PF00258 Flavodoxin PF515_03240 PF00667 FAD binding domain PF515_03250 PF12805 FUSC-like inner membrane protein yccS PF515_03255 PF07690 Major Facilitator Superfamily PF515_03260 PF00881 Nitroreductase family PF515_03275 PF01235 Sodium:alanine symporter family PF515_03280 PF01734 Patatin-like phospholipase PF515_03285 PF13291 ACT domain PF515_03285 PF00291 Pyridoxal-phosphate dependent enzyme PF515_03290 PF05992 SbmA/BacA-like family PF515_03330 PF02637 GatB domain PF515_03330 PF02934 GatB/GatE catalytic domain PF515_03335 PF01425 Amidase PF515_03340 PF02686 Glu-tRNAGln amidotransferase C subunit PF515_03350 PF04085 rod shape-determining protein MreC PF515_03355 PF04093 rod shape-determining protein MreD PF515_03360 PF02545 Maf-like protein PF515_03365 PF00575 S1 RNA binding domain PF515_03365 PF10150 Ribonuclease E/G family PF515_03375 PF06974 Protein of unknown function (DUF1298) PF515_03375 PF03007 Wax ester synthase-like Acyl-CoA acyltransferase domain PF515_03380 PF01507 Phosphoadenosine phosphosulfate reductase family PF515_03395 PF02525 Flavodoxin-like fold PF515_03415 PF02673 Bacitracin resistance protein BacA PF515_03420 PF06719 AraC-type transcriptional regulator N-terminus PF515_03420 PF12833 Helix-turn-helix domain PF515_03425 PF00698 Acyl transferase domain PF515_03425 PF08240 Alcohol dehydrogenase GroES-like domain PF515_03425 PF08990 Erythronolide synthase docking PF515_03425 PF09277 Erythronolide synthase, docking PF515_03425 PF16197 Ketoacyl-synthetase C-terminal extension PF515_03425 PF00109 Beta-ketoacyl synthase, N-terminal domain PF515_03425 PF02801 Beta-ketoacyl synthase, C-terminal domain PF515_03425 PF08659 KR domain PF515_03425 PF00550 Phosphopantetheine attachment site PF515_03425 PF14765 Polyketide synthase dehydratase PF515_03430 PF01965 DJ-1/PfpI family PF515_03440 PF00324 Amino acid permease PF515_03445 PF04303 PrpF protein PF515_03450 PF00348 Polyprenyl synthetase PF515_03455 PF04237 YjbR PF515_03460 PF01145 SPFH domain / Band 7 family PF515_03470 PF01734 Patatin-like phospholipase PF515_03490 PF08019 Phosphoethanolamine transferase EptA/EptB PF515_03490 PF00884 Sulfatase PF515_03495 PF00072 Response regulator receiver domain PF515_03495 PF00486 Transcriptional regulatory protein, C terminal PF515_03500 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PF515_03500 PF00512 His Kinase A (phospho-acceptor) domain PF515_03500 PF08521 Two-component sensor kinase N-terminal PF515_03510 PF00909 Ammonium Transporter Family PF515_03515 PF03466 LysR substrate binding domain PF515_03515 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family PF515_03535 PF08264 Anticodon-binding domain of tRNA PF515_03535 PF10458 Valyl tRNA synthetase tRNA binding arm PF515_03535 PF00133 tRNA synthetases class I (I, L, M and V) PF515_03555 PF01906 Putative heavy-metal-binding PF515_03560 PF01906 Putative heavy-metal-binding PF515_03565 PF02321 Outer membrane efflux protein PF515_03570 PF00873 AcrB/AcrD/AcrF family PF515_03575 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion PF515_03575 PF00529 HlyD membrane-fusion protein of T1SS PF515_03580 PF01569 PAP2 superfamily PF515_03590 PF00348 Polyprenyl synthetase PF515_03600 PF00829 Ribosomal prokaryotic L21 protein PF515_03605 PF01016 Ribosomal L27 protein PF515_03610 PF03548 Outer membrane lipoprotein carrier protein LolA PF515_03620 PF02403 Seryl-tRNA synthetase N-terminal domain PF515_03620 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) PF515_03625 PF14824 Sirohaem biosynthesis protein central PF515_03625 PF10414 Sirohaem synthase dimerisation region PF515_03625 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases PF515_03630 PF00588 SpoU rRNA Methylase family PF515_03635 PF01638 HxlR-like helix-turn-helix PF515_03640 PF03358 NADPH-dependent FMN reductase PF515_03645 PF13520 Amino acid permease PF515_03650 PF00465 Iron-containing alcohol dehydrogenase PF515_03660 PF03099 Biotin/lipoate A/B protein ligase family PF515_03665 PF04359 Protein of unknown function (DUF493) PF515_03670 PF04545 Sigma-70, region 4 PF515_03670 PF04539 Sigma-70 region 3 PF515_03670 PF04542 Sigma-70 region 2 PF515_03670 PF00140 Sigma-70 factor, region 1.2 PF515_03670 PF03979 Sigma-70 factor, region 1.1 PF515_03670 PF04546 Sigma-70, non-essential region PF515_03690 PF17773 UPF0176 acylphosphatase like domain PF515_03690 PF00581 Rhodanese-like domain PF515_03700 PF00285 Citrate synthase, C-terminal domain PF515_03705 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit PF515_03710 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit PF515_03715 PF00890 FAD binding domain PF515_03715 PF02910 Fumarate reductase flavoprotein C-term PF515_03720 PF13085 2Fe-2S iron-sulfur cluster binding domain PF515_03735 PF16870 2-oxoglutarate dehydrogenase C-terminal PF515_03735 PF02779 Transketolase, pyrimidine binding domain PF515_03735 PF16078 2-oxoglutarate dehydrogenase N-terminus PF515_03735 PF00676 Dehydrogenase E1 component PF515_03740 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) PF515_03740 PF00364 Biotin-requiring enzyme PF515_03740 PF02817 e3 binding domain PF515_03745 PF07992 Pyridine nucleotide-disulphide oxidoreductase PF515_03745 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain PF515_03750 PF08442 ATP-grasp domain PF515_03750 PF00549 CoA-ligase PF515_03755 PF02629 CoA binding domain PF515_03755 PF00549 CoA-ligase PF515_03760 PF00579 tRNA synthetases class I (W and Y) PF515_03765 PF05661 Protein of unknown function (DUF808) PF515_03770 PF04228 Putative neutral zinc metallopeptidase PF515_03775 PF00999 Sodium/hydrogen exchanger family PF515_03790 PF09587 Bacterial capsule synthesis protein PGA_cap PF515_03800 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain PF515_03805 PF00582 Universal stress protein family PF515_03810 PF00132 Bacterial transferase hexapeptide (six repeats) PF515_03815 PF01272 Transcription elongation factor, GreA/GreB, C-term PF515_03815 PF03449 Transcription elongation factor, N-terminal PF515_03820 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain PF515_03820 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain PF515_03820 PF02142 MGS-like domain PF515_03825 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain PF515_03825 PF00117 Glutamine amidotransferase class-I PF515_03840 PF01985 CRS1 / YhbY (CRM) domain PF515_03845 PF01728 FtsJ-like methyltransferase PF515_03850 PF00004 ATPase family associated with various cellular activities (AAA) PF515_03850 PF17862 AAA+ lid domain PF515_03850 PF06480 FtsH Extracellular PF515_03850 PF01434 Peptidase family M41 PF515_03855 PF00809 Pterin binding enzyme PF515_03875 PF09423 PhoD-like phosphatase PF515_03875 PF16655 PhoD-like phosphatase, N-terminal domain PF515_03890 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain PF515_03890 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain PF515_03905 PF00083 Sugar (and other) transporter PF515_03910 PF02782 FGGY family of carbohydrate kinases, C-terminal domain PF515_03910 PF00370 FGGY family of carbohydrate kinases, N-terminal domain PF515_03915 PF01266 FAD dependent oxidoreductase PF515_03915 PF16901 C-terminal domain of alpha-glycerophosphate oxidase PF515_03920 PF00821 Phosphoenolpyruvate carboxykinase C-terminal P-loop domain PF515_03920 PF17297 Phosphoenolpyruvate carboxykinase N-terminal domain PF515_03925 PF00781 Diacylglycerol kinase catalytic domain PF515_03930 PF00149 Calcineurin-like phosphoesterase PF515_03940 PF00166 Chaperonin 10 Kd subunit PF515_03945 PF00118 TCP-1/cpn60 chaperonin family PF515_03950 PF01219 Prokaryotic diacylglycerol kinase PF515_03960 PF03009 Glycerophosphoryl diester phosphodiesterase family PF515_03965 PF00873 AcrB/AcrD/AcrF family PF515_03975 PF01435 Peptidase family M48 PF515_03980 PF01464 Transglycosylase SLT domain PF515_03985 PF01171 PP-loop family PF515_03995 PF00497 Bacterial extracellular solute-binding proteins, family 3 PF515_03995 PF01464 Transglycosylase SLT domain PF515_04000 PF01272 Transcription elongation factor, GreA/GreB, C-term PF515_04000 PF03449 Transcription elongation factor, N-terminal PF515_04015 PF00501 AMP-binding enzyme PF515_04015 PF13193 AMP-binding enzyme C-terminal domain PF515_04015 PF00668 Condensation domain PF515_04015 PF00550 Phosphopantetheine attachment site PF515_04015 PF00975 Thioesterase domain PF515_04045 PF00881 Nitroreductase family PF515_04060 PF02595 Glycerate kinase family PF515_04065 PF00384 Molybdopterin oxidoreductase PF515_04070 PF02634 FdhD/NarQ family PF515_04075 PF06803 Protein of unknown function (DUF1232) PF515_04080 PF11890 Domain of unknown function (DUF3410) PF515_04080 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain PF515_04080 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain PF515_04085 PF00152 tRNA synthetases class II (D, K and N) PF515_04095 PF18073 Rubredoxin metal binding domain PF515_04100 PF00324 Amino acid permease PF515_04110 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain PF515_04110 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain PF515_04115 PF01678 Diaminopimelate epimerase PF515_04120 PF01810 LysE type translocator PF515_04125 PF02899 Phage integrase, N-terminal SAM-like domain PF515_04125 PF00589 Phage integrase family PF515_04130 PF01012 Electron transfer flavoprotein domain PF515_04135 PF01012 Electron transfer flavoprotein domain PF515_04135 PF00766 Electron transfer flavoprotein FAD-binding domain PF515_04140 PF00521 DNA gyrase/topoisomerase IV, subunit A PF515_04140 PF03989 DNA gyrase C-terminal domain, beta-propeller PF515_04155 PF00535 Glycosyl transferase family 2 PF515_04175 PF13533 Biotin-lipoyl like PF515_04185 PF00266 Aminotransferase class-V PF515_04200 PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 PF515_04210 PF02687 FtsX-like permease family PF515_04210 PF12704 MacB-like periplasmic core domain PF515_04215 PF00005 ABC transporter PF515_04220 PF03772 Competence protein PF515_04220 PF13567 Domain of unknown function (DUF4131) PF515_04220 PF00753 Metallo-beta-lactamase superfamily PF515_04230 PF06965 Na+/H+ antiporter 1 PF515_04230 PF01343 Peptidase family S49 PF515_04235 PF12697 Alpha/beta hydrolase family PF515_04240 PF00551 Formyl transferase PF515_04245 PF02769 AIR synthase related protein, C-terminal domain PF515_04245 PF00586 AIR synthase related protein, N-terminal domain PF515_04250 PF01594 AI-2E family transporter PF515_04255 PF11638 DnaA N-terminal domain PF515_04255 PF08299 Bacterial dnaA protein helix-turn-helix PF515_04255 PF00308 Bacterial dnaA protein PF515_04290 PF00588 SpoU rRNA Methylase family PF515_04290 PF08032 RNA 2'-O ribose methyltransferase substrate binding PF515_04295 PF00316 Fructose-1-6-bisphosphatase, N-terminal domain PF515_04305 PF00691 OmpA family PF515_04310 PF04052 TolB amino-terminal domain PF515_04310 PF07676 WD40-like Beta Propeller Repeat PF515_04320 PF02472 Biopolymer transport protein ExbD/TolR PF515_04325 PF01618 MotA/TolQ/ExbB proton channel family PF515_04330 PF03061 Thioesterase superfamily PF515_04335 PF07687 Peptidase dimerisation domain PF515_04335 PF01546 Peptidase family M20/M25/M40 PF515_04340 PF05491 RuvB C-terminal winged helix domain PF515_04340 PF05496 Holliday junction DNA helicase RuvB P-loop domain PF515_04340 PF17864 RuvB AAA lid domain PF515_04345 PF07499 RuvA, C-terminal domain PF515_04345 PF01330 RuvA N terminal domain PF515_04350 PF01966 HD domain PF515_04355 PF02769 AIR synthase related protein, C-terminal domain PF515_04355 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain PF515_04355 PF18076 Formylglycinamide ribonucleotide amidotransferase N-terminal PF515_04360 PF07690 Major Facilitator Superfamily PF515_04370 PF01784 NIF3 (NGG1p interacting factor 3) PF515_04375 PF00378 Enoyl-CoA hydratase/isomerase PF515_04380 PF00293 NUDIX domain PF515_04380 PF01467 Cytidylyltransferase-like PF515_04390 PF00578 AhpC/TSA family PF515_04405 PF06508 Queuosine biosynthesis protein QueC PF515_04415 PF00132 Bacterial transferase hexapeptide (six repeats) PF515_04415 PF14602 Hexapeptide repeat of succinyl-transferase PF515_04415 PF14805 Tetrahydrodipicolinate N-succinyltransferase N-terminal PF515_04425 PF03466 LysR substrate binding domain PF515_04425 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family PF515_04430 PF00005 ABC transporter PF515_04430 PF12857 TOBE-like domain PF515_04435 PF00528 Binding-protein-dependent transport system inner membrane component PF515_04440 PF00528 Binding-protein-dependent transport system inner membrane component PF515_04455 PF01063 Amino-transferase class IV PF515_04460 PF02618 YceG-like family PF515_04465 PF02223 Thymidylate kinase PF515_04475 PF02910 Fumarate reductase flavoprotein C-term PF515_04475 PF00890 FAD binding domain PF515_04480 PF13180 PDZ domain PF515_04490 PF00679 Elongation factor G C-terminus PF515_04490 PF06421 GTP-binding protein LepA C-terminus PF515_04490 PF03144 Elongation factor Tu domain 2 PF515_04490 PF00009 Elongation factor Tu GTP binding domain PF515_04495 PF10502 Signal peptidase, peptidase S26 PF515_04505 PF14622 Ribonuclease-III-like PF515_04505 PF00035 Double-stranded RNA binding motif PF515_04510 PF07650 KH domain PF515_04510 PF01926 50S ribosome-binding GTPase PF515_04520 PF11967 Recombination protein O N terminal PF515_04520 PF02565 Recombination protein O C terminal PF515_04525 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ PF515_04530 PF06175 tRNA-(MS[2]IO[6]A)-hydroxylase (MiaE) PF515_04535 PF00106 short chain dehydrogenase PF515_04565 PF00155 Aminotransferase class I and II PF515_04575 PF17151 Periplasmic sensor domain PF515_04575 PF00990 Diguanylate cyclase, GGDEF domain PF515_04585 PF00271 Helicase conserved C-terminal domain PF515_04585 PF04851 Type III restriction enzyme, res subunit PF515_04585 PF02151 UvrB/uvrC motif PF515_04585 PF12344 Ultra-violet resistance protein B PF515_04585 PF17757 UvrB interaction domain PF515_04595 PF00892 EamA-like transporter family PF515_04600 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain PF515_04600 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain PF515_04615 PF01926 50S ribosome-binding GTPase PF515_04615 PF01018 GTP1/OBG PF515_04620 PF00696 Amino acid kinase family PF515_04620 PF01472 PUA domain PF515_04630 PF07759 Protein of unknown function (DUF1615) PF515_04635 PF01207 Dihydrouridine synthase (Dus) PF515_04640 PF03060 Nitronate monooxygenase PF515_04655 PF02350 UDP-N-acetylglucosamine 2-epimerase PF515_04685 PF00875 DNA photolyase PF515_04685 PF03441 FAD binding domain of DNA photolyase PF515_04690 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase PF515_04695 PF07992 Pyridine nucleotide-disulphide oxidoreductase PF515_04700 PF00768 D-alanyl-D-alanine carboxypeptidase PF515_04700 PF07943 Penicillin-binding protein 5, C-terminal domain PF515_04710 PF03971 Monomeric isocitrate dehydrogenase PF515_04715 PF00849 RNA pseudouridylate synthase PF515_04720 PF00180 Isocitrate/isopropylmalate dehydrogenase PF515_04740 PF06779 Uncharacterised MFS-type transporter YbfB PF515_04745 PF03466 LysR substrate binding domain PF515_04745 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family PF515_04750 PF00375 Sodium:dicarboxylate symporter family PF515_04770 PF00675 Insulinase (Peptidase family M16) PF515_04770 PF05193 Peptidase M16 inactive domain PF515_04795 PF02581 Thiamine monophosphate synthase PF515_04800 PF00202 Aminotransferase class-III PF515_04810 PF00849 RNA pseudouridylate synthase PF515_04815 PF00271 Helicase conserved C-terminal domain PF515_04815 PF12137 RNA polymerase recycling family C-terminal PF515_04815 PF00176 SNF2 family N-terminal domain PF515_04815 PF18339 RapA N-terminal Tudor like domain 1 PF515_04815 PF18337 RapA N-terminal Tudor like domain PF515_04825 PF00440 Bacterial regulatory proteins, tetR family PF515_04830 PF00111 2Fe-2S iron-sulfur cluster binding domain PF515_04830 PF00175 Oxidoreductase NAD-binding domain PF515_04830 PF00970 Oxidoreductase FAD-binding domain PF515_04835 PF00487 Fatty acid desaturase PF515_04845 PF17754 MftR C-terminal domain PF515_04845 PF00440 Bacterial regulatory proteins, tetR family PF515_04855 PF00202 Aminotransferase class-III PF515_04860 PF00282 Pyridoxal-dependent decarboxylase conserved domain PF515_04865 PF00171 Aldehyde dehydrogenase family PF515_04870 PF01037 Lrp/AsnC ligand binding domain PF515_04875 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain PF515_04875 PF00205 Thiamine pyrophosphate enzyme, central domain PF515_04875 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain PF515_04880 PF00324 Amino acid permease PF515_04885 PF12849 PBP superfamily domain PF515_04890 PF00528 Binding-protein-dependent transport system inner membrane component PF515_04895 PF00528 Binding-protein-dependent transport system inner membrane component PF515_04900 PF00005 ABC transporter PF515_04905 PF08496 Peptidase family S49 N-terminal PF515_04905 PF01343 Peptidase family S49 PF515_04915 PF00872 Transposase, Mutator family PF515_04925 PF00206 Lyase PF515_04925 PF08328 Adenylosuccinate lyase C-terminal PF515_04930 PF04356 Protein of unknown function (DUF489) PF515_04940 PF13344 Haloacid dehalogenase-like hydrolase PF515_04940 PF00293 NUDIX domain PF515_04945 PF00132 Bacterial transferase hexapeptide (six repeats) PF515_04950 PF00768 D-alanyl-D-alanine carboxypeptidase PF515_04950 PF07943 Penicillin-binding protein 5, C-terminal domain PF515_04965 PF01975 Survival protein SurE PF515_04970 PF01551 Peptidase family M23 PF515_04970 PF01476 LysM domain PF515_04975 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family PF515_04975 PF03466 LysR substrate binding domain PF515_04980 PF13654 AAA domain PF515_04980 PF05362 Lon protease (S16) C-terminal proteolytic domain PF515_04985 PF07690 Major Facilitator Superfamily PF515_04990 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily PF515_04995 PF13593 SBF-like CPA transporter family (DUF4137) PF515_05000 PF01197 Ribosomal protein L31 PF515_05015 PF04055 Radical SAM superfamily PF515_05020 PF08207 Elongation factor P (EF-P) KOW-like domain PF515_05020 PF09285 Elongation factor P, C-terminal PF515_05020 PF01132 Elongation factor P (EF-P) OB domain PF515_05025 PF02554 Carbon starvation protein CstA PF515_05025 PF13722 5TM C-terminal transporter carbon starvation CstA PF515_05030 PF04328 Selenoprotein, putative PF515_05065 PF06018 CodY GAF-like domain PF515_05065 PF13556 PucR C-terminal helix-turn-helix domain PF515_05065 PF17853 GGDEF-like domain PF515_05080 PF00171 Aldehyde dehydrogenase family PF515_05085 PF00324 Amino acid permease PF515_05090 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family PF515_05090 PF03466 LysR substrate binding domain PF515_05095 PF02028 BCCT, betaine/carnitine/choline family transporter PF515_05100 PF02028 BCCT, betaine/carnitine/choline family transporter PF515_05105 PF00355 Rieske [2Fe-2S] domain PF515_05105 PF00848 Ring hydroxylating alpha subunit (catalytic domain) PF515_05110 PF00171 Aldehyde dehydrogenase family PF515_05120 PF18113 Rubredoxin binding C-terminal domain PF515_05120 PF07992 Pyridine nucleotide-disulphide oxidoreductase PF515_05125 PF01266 FAD dependent oxidoreductase PF515_05125 PF05430 S-adenosyl-L-methionine-dependent methyltransferase PF515_05145 PF00892 EamA-like transporter family PF515_05155 PF02604 Antitoxin Phd_YefM, type II toxin-antitoxin system PF515_05160 PF00083 Sugar (and other) transporter PF515_05165 PF13378 Enolase C-terminal domain-like PF515_05165 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain PF515_05170 PF09277 Erythronolide synthase, docking PF515_05170 PF08659 KR domain PF515_05170 PF02801 Beta-ketoacyl synthase, C-terminal domain PF515_05170 PF00109 Beta-ketoacyl synthase, N-terminal domain PF515_05170 PF16197 Ketoacyl-synthetase C-terminal extension PF515_05170 PF08990 Erythronolide synthase docking PF515_05170 PF00550 Phosphopantetheine attachment site PF515_05170 PF14765 Polyketide synthase dehydratase PF515_05170 PF00698 Acyl transferase domain PF515_05170 PF08240 Alcohol dehydrogenase GroES-like domain PF515_05175 PF00440 Bacterial regulatory proteins, tetR family PF515_05195 PF17954 Quercetinase C-terminal cupin domain PF515_05195 PF02678 Pirin PF515_05205 PF08348 YheO-like PAS domain PF515_05205 PF13309 HTH domain PF515_05215 PF00668 Condensation domain PF515_05215 PF13193 AMP-binding enzyme C-terminal domain PF515_05215 PF00501 AMP-binding enzyme PF515_05215 PF00550 Phosphopantetheine attachment site PF515_05220 PF00975 Thioesterase domain PF515_05220 PF13193 AMP-binding enzyme C-terminal domain PF515_05220 PF00501 AMP-binding enzyme PF515_05220 PF00550 Phosphopantetheine attachment site PF515_05220 PF00668 Condensation domain PF515_05230 PF01032 FecCD transport family PF515_05235 PF01032 FecCD transport family PF515_05240 PF00005 ABC transporter PF515_05245 PF01497 Periplasmic binding protein PF515_05250 PF00593 TonB dependent receptor PF515_05250 PF07715 TonB-dependent Receptor Plug Domain PF515_05255 PF13434 L-lysine 6-monooxygenase (NADPH-requiring) PF515_05260 PF00501 AMP-binding enzyme PF515_05260 PF00550 Phosphopantetheine attachment site PF515_05260 PF00668 Condensation domain PF515_05265 PF00501 AMP-binding enzyme PF515_05265 PF13193 AMP-binding enzyme C-terminal domain PF515_05270 PF00857 Isochorismatase family PF515_05270 PF00550 Phosphopantetheine attachment site PF515_05275 PF00282 Pyridoxal-dependent decarboxylase conserved domain PF515_05285 PF00005 ABC transporter PF515_05290 PF00005 ABC transporter PF515_05295 PF00975 Thioesterase domain PF515_05305 PF00425 chorismate binding enzyme PF515_05315 PF01208 Uroporphyrinogen decarboxylase (URO-D) PF515_05320 PF05675 Protein of unknown function (DUF817) PF515_05335 PF00144 Beta-lactamase PF515_05345 PF01227 GTP cyclohydrolase I PF515_05350 PF00111 2Fe-2S iron-sulfur cluster binding domain PF515_05350 PF01799 [2Fe-2S] binding domain PF515_05355 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain PF515_05355 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase PF515_05370 PF00218 Indole-3-glycerol phosphate synthase PF515_05375 PF02885 Glycosyl transferase family, helical bundle domain PF515_05375 PF00591 Glycosyl transferase family, a/b domain PF515_05380 PF00593 TonB dependent receptor PF515_05380 PF07715 TonB-dependent Receptor Plug Domain PF515_05385 PF01433 Peptidase family M1 domain PF515_05385 PF11838 ERAP1-like C-terminal domain PF515_05390 PF00117 Glutamine amidotransferase class-I PF515_05400 PF00854 POT family PF515_05405 PF00120 Glutamine synthetase, catalytic domain PF515_05405 PF03951 Glutamine synthetase, beta-Grasp domain PF515_05410 PF04345 Chorismate lyase PF515_05415 PF01040 UbiA prenyltransferase family PF515_05450 PF02777 Iron/manganese superoxide dismutases, C-terminal domain PF515_05450 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain PF515_05455 PF01784 NIF3 (NGG1p interacting factor 3) PF515_05460 PF13180 PDZ domain PF515_05465 PF12627 Probable RNA and SrmB- binding site of polymerase A PF515_05465 PF01743 Poly A polymerase head domain PF515_05470 PF00390 Malic enzyme, N-terminal domain PF515_05470 PF03949 Malic enzyme, NAD binding domain PF515_05470 PF01515 Phosphate acetyl/butaryl transferase PF515_05475 PF00563 EAL domain PF515_05475 PF00990 Diguanylate cyclase, GGDEF domain PF515_05475 PF03707 Bacterial signalling protein N terminal repeat PF515_05480 PF04452 RNA methyltransferase PF515_05485 PF02219 Methylenetetrahydrofolate reductase PF515_05490 PF05221 S-adenosyl-L-homocysteine hydrolase PF515_05490 PF00670 S-adenosyl-L-homocysteine hydrolase, NAD binding domain PF515_05505 PF00441 Acyl-CoA dehydrogenase, C-terminal domain PF515_05505 PF02771 Acyl-CoA dehydrogenase, N-terminal domain PF515_05505 PF09317 Domain of unknown function (DUF1974) PF515_05510 PF04055 Radical SAM superfamily PF515_05515 PF07992 Pyridine nucleotide-disulphide oxidoreductase PF515_05515 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain PF515_05525 PF07690 Major Facilitator Superfamily PF515_05535 PF00557 Metallopeptidase family M24 PF515_05540 PF00318 Ribosomal protein S2 PF515_05545 PF00889 Elongation factor TS PF515_05555 PF12833 Helix-turn-helix domain PF515_05575 PF03330 Lytic transglycolase PF515_05575 PF05036 Sporulation related domain PF515_05580 PF13406 Transglycosylase SLT domain PF515_05585 PF01098 Cell cycle protein PF515_05595 PF14819 Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term PF515_05595 PF14489 QueF-like protein PF515_05600 PF01061 ABC-2 type transporter PF515_05605 PF00005 ABC transporter PF515_05635 PF00464 Serine hydroxymethyltransferase PF515_05640 PF02321 Outer membrane efflux protein PF515_05645 PF00873 AcrB/AcrD/AcrF family PF515_05650 PF13533 Biotin-lipoyl like PF515_05655 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family PF515_05655 PF03466 LysR substrate binding domain PF515_05660 PF00497 Bacterial extracellular solute-binding proteins, family 3 PF515_05665 PF00528 Binding-protein-dependent transport system inner membrane component PF515_05670 PF00528 Binding-protein-dependent transport system inner membrane component PF515_05675 PF00005 ABC transporter PF515_05680 PF00893 Small Multidrug Resistance protein PF515_05685 PF00037 4Fe-4S binding domain PF515_05690 PF01136 Peptidase family U32 PF515_05690 PF16325 Peptidase family U32 C-terminal domain PF515_05695 PF00155 Aminotransferase class I and II PF515_05695 PF00392 Bacterial regulatory proteins, gntR family PF515_05700 PF02567 Phenazine biosynthesis-like protein PF515_05705 PF00970 Oxidoreductase FAD-binding domain PF515_05705 PF00175 Oxidoreductase NAD-binding domain PF515_05710 PF18389 TrmO C-terminal domain PF515_05710 PF01980 tRNA-methyltransferase O PF515_05720 PF00437 Type II/IV secretion system protein PF515_05720 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain PF515_05730 PF00072 Response regulator receiver domain PF515_05730 PF00486 Transcriptional regulatory protein, C terminal PF515_05735 PF00512 His Kinase A (phospho-acceptor) domain PF515_05735 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PF515_05735 PF08521 Two-component sensor kinase N-terminal PF515_05745 PF00293 NUDIX domain PF515_05755 PF14814 Bifunctional transglycosylase second domain PF515_05755 PF00905 Penicillin binding protein transpeptidase domain PF515_05755 PF00912 Transglycosylase PF515_05760 PF01513 ATP-NAD kinase PF515_05765 PF07023 Protein of unknown function (DUF1315) PF515_05770 PF00591 Glycosyl transferase family, a/b domain PF515_05770 PF02885 Glycosyl transferase family, helical bundle domain PF515_05775 PF00375 Sodium:dicarboxylate symporter family PF515_05780 PF02771 Acyl-CoA dehydrogenase, N-terminal domain PF515_05780 PF02770 Acyl-CoA dehydrogenase, middle domain PF515_05780 PF00441 Acyl-CoA dehydrogenase, C-terminal domain PF515_05785 PF00756 Putative esterase PF515_05790 PF01817 Chorismate mutase type II PF515_05790 PF00800 Prephenate dehydratase PF515_05790 PF01842 ACT domain PF515_05795 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) PF515_05805 PF07687 Peptidase dimerisation domain PF515_05805 PF01546 Peptidase family M20/M25/M40 PF515_05810 PF12706 Beta-lactamase superfamily domain PF515_05820 PF03883 Peroxide stress protein YaaA PF515_05830 PF05690 Thiazole biosynthesis protein ThiG PF515_05840 PF04241 Protein of unknown function (DUF423) PF515_05845 PF00140 Sigma-70 factor, region 1.2 PF515_05845 PF04542 Sigma-70 region 2 PF515_05845 PF04545 Sigma-70, region 4 PF515_05860 PF00313 'Cold-shock' DNA-binding domain PF515_05865 PF00270 DEAD/DEAH box helicase PF515_05865 PF00271 Helicase conserved C-terminal domain PF515_05875 PF00881 Nitroreductase family PF515_05880 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus PF515_05880 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus PF515_05900 PF01180 Dihydroorotate dehydrogenase PF515_05905 PF02674 Colicin V production protein PF515_05910 PF00156 Phosphoribosyl transferase domain PF515_05925 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain PF515_05925 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain PF515_05930 PF01435 Peptidase family M48 PF515_05935 PF09424 Yqey-like protein PF515_05940 PF01165 Ribosomal protein S21 PF515_05945 PF00814 Glycoprotease family PF515_05965 PF00069 Protein kinase domain PF515_05990 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family PF515_05990 PF03466 LysR substrate binding domain PF515_05995 PF00202 Aminotransferase class-III PF515_06000 PF00171 Aldehyde dehydrogenase family PF515_06005 PF00324 Amino acid permease PF515_06035 PF04076 Bacterial OB fold (BOF) protein PF515_06060 PF00561 alpha/beta hydrolase fold PF515_06065 PF03616 Sodium/glutamate symporter PF515_06075 PF00392 Bacterial regulatory proteins, gntR family PF515_06075 PF07729 FCD domain PF515_06125 PF08946 Osmosensory transporter coiled coil PF515_06125 PF00083 Sugar (and other) transporter PF515_06150 PF00155 Aminotransferase class I and II PF515_06155 PF06826 Predicted Permease Membrane Region PF515_06155 PF02080 TrkA-C domain PF515_06165 PF04403 Paraquat-inducible protein A PF515_06170 PF02470 MlaD protein PF515_06185 PF07091 Ribosomal RNA methyltransferase (FmrO) PF515_06200 PF12848 ABC transporter PF515_06200 PF00005 ABC transporter PF515_06205 PF01636 Phosphotransferase enzyme family PF515_06215 PF13005 zinc-finger binding domain of transposase IS66 PF515_06215 PF03050 Transposase IS66 family PF515_06215 PF13817 IS66 C-terminal element PF515_06215 PF13007 Transposase C of IS166 homeodomain PF515_06235 PF01051 Initiator Replication protein PF515_06240 PF13610 DDE domain PF515_06255 PF00375 Sodium:dicarboxylate symporter family PF515_06265 PF00753 Metallo-beta-lactamase superfamily PF515_06265 PF16123 Hydroxyacylglutathione hydrolase C-terminus PF515_06270 PF00528 Binding-protein-dependent transport system inner membrane component PF515_06275 PF00005 ABC transporter PF515_06275 PF09383 NIL domain PF515_06280 PF03180 NLPA lipoprotein PF515_06285 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain PF515_06285 PF02843 Phosphoribosylglycinamide synthetase, C domain PF515_06285 PF02844 Phosphoribosylglycinamide synthetase, N domain PF515_06290 PF01808 AICARFT/IMPCHase bienzyme PF515_06290 PF02142 MGS-like domain PF515_06295 PF02954 Bacterial regulatory protein, Fis family PF515_06315 PF01134 Glucose inhibited division protein A PF515_06315 PF13932 GidA associated domain PF515_06325 PF14403 Circularly permuted ATP-grasp type 2 PF515_06335 PF08379 Bacterial transglutaminase-like N-terminal region PF515_06335 PF01841 Transglutaminase-like superfamily PF515_06345 PF00842 Alanine racemase, C-terminal domain PF515_06345 PF01168 Alanine racemase, N-terminal domain PF515_06350 PF00772 DnaB-like helicase N terminal domain PF515_06350 PF03796 DnaB-like helicase C terminal domain PF515_06355 PF01281 Ribosomal protein L9, N-terminal domain PF515_06355 PF03948 Ribosomal protein L9, C-terminal domain PF515_06360 PF01084 Ribosomal protein S18 PF515_06365 PF01250 Ribosomal protein S6 PF515_06370 PF01040 UbiA prenyltransferase family PF515_06375 PF03626 Prokaryotic Cytochrome C oxidase subunit IV PF515_06380 PF00510 Cytochrome c oxidase subunit III PF515_06385 PF00115 Cytochrome C and Quinol oxidase polypeptide I PF515_06390 PF06481 COX Aromatic Rich Motif PF515_06390 PF00116 Cytochrome C oxidase subunit II, periplasmic domain PF515_06400 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain PF515_06400 PF02896 PEP-utilising enzyme, TIM barrel domain PF515_06400 PF00391 PEP-utilising enzyme, mobile domain PF515_06405 PF03618 Kinase/pyrophosphorylase PF515_06415 PF01522 Polysaccharide deacetylase PF515_06415 PF14883 Hypothetical glycosyl hydrolase family 13 PF515_06420 PF00535 Glycosyl transferase family 2 PF515_06425 PF13994 PgaD-like protein PF515_06435 PF00296 Luciferase-like monooxygenase PF515_06450 PF03466 LysR substrate binding domain PF515_06450 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family PF515_06460 PF00472 RF-1 domain PF515_06460 PF03462 PCRF domain PF515_06465 PF17827 PrmC N-terminal domain PF515_06465 PF13847 Methyltransferase domain PF515_06470 PF00528 Binding-protein-dependent transport system inner membrane component PF515_06475 PF09084 NMT1/THI5 like PF515_06480 PF12833 Helix-turn-helix domain PF515_06485 PF00106 short chain dehydrogenase PF515_06505 PF13193 AMP-binding enzyme C-terminal domain PF515_06505 PF00501 AMP-binding enzyme PF515_06510 PF01613 Flavin reductase like domain PF515_06515 PF00899 ThiF family PF515_06520 PF03109 ABC1 family PF515_06535 PF03814 Potassium-transporting ATPase A subunit PF515_06545 PF02669 K+-transporting ATPase, c chain PF515_06550 PF13493 Domain of unknown function (DUF4118) PF515_06550 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PF515_06550 PF02702 Osmosensitive K+ channel His kinase sensor domain PF515_06550 PF00512 His Kinase A (phospho-acceptor) domain PF515_06555 PF00072 Response regulator receiver domain PF515_06555 PF00486 Transcriptional regulatory protein, C terminal PF515_06560 PF00120 Glutamine synthetase, catalytic domain PF515_06570 PF03232 Ubiquinone biosynthesis protein COQ7 PF515_06575 PF07690 Major Facilitator Superfamily PF515_06580 PF07244 Surface antigen variable number repeat PF515_06580 PF17243 POTRA domain TamA domain 1 PF515_06580 PF01103 Surface antigen PF515_06595 PF06434 Aconitate hydratase 2 N-terminus PF515_06595 PF00330 Aconitase family (aconitate hydratase) PF515_06595 PF11791 Aconitate B N-terminal domain PF515_06605 PF00520 Ion transport protein PF515_06605 PF00027 Cyclic nucleotide-binding domain PF515_06610 PF07690 Major Facilitator Superfamily PF515_06625 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family PF515_06625 PF03466 LysR substrate binding domain PF515_06630 PF04284 Protein of unknown function (DUF441) PF515_06640 PF00849 RNA pseudouridylate synthase PF515_06640 PF01479 S4 domain PF515_06655 PF01479 S4 domain PF515_06655 PF00849 RNA pseudouridylate synthase PF515_06660 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE PF515_06665 PF08676 MutL C terminal dimerisation domain PF515_06665 PF01119 DNA mismatch repair protein, C-terminal domain PF515_06675 PF17209 Hfq protein PF515_06685 PF00881 Nitroreductase family PF515_06695 PF00149 Calcineurin-like phosphoesterase PF515_06700 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD PF515_06705 PF00749 tRNA synthetases class I (E and Q), catalytic domain PF515_06705 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain PF515_06710 PF00117 Glutamine amidotransferase class-I PF515_06710 PF02540 NAD synthase PF515_06710 PF00958 GMP synthase C terminal domain PF515_06715 PF05985 Ethanolamine ammonia-lyase light chain (EutC) PF515_06720 PF06751 Ethanolamine ammonia lyase large subunit (EutB) PF515_06725 PF13520 Amino acid permease PF515_06730 PF00171 Aldehyde dehydrogenase family PF515_06745 PF00465 Iron-containing alcohol dehydrogenase PF515_06750 PF05970 PIF1-like helicase PF515_06750 PF14493 Helix-turn-helix domain PF515_06760 PF06445 GyrI-like small molecule binding domain PF515_06765 PF02110 Hydroxyethylthiazole kinase family PF515_06780 PF17432 Domain of unknown function (DUF3458_C) ARM repeats PF515_06780 PF01433 Peptidase family M1 domain PF515_06780 PF11940 Domain of unknown function (DUF3458) Ig-like fold PF515_06810 PF01817 Chorismate mutase type II PF515_06815 PF01037 Lrp/AsnC ligand binding domain PF515_06830 PF00440 Bacterial regulatory proteins, tetR family PF515_06835 PF00593 TonB dependent receptor PF515_06835 PF07715 TonB-dependent Receptor Plug Domain PF515_06840 PF00924 Mechanosensitive ion channel PF515_06875 PF00593 TonB dependent receptor PF515_06875 PF07715 TonB-dependent Receptor Plug Domain PF515_06895 PF00005 ABC transporter PF515_06895 PF12848 ABC transporter PF515_06900 PF00582 Universal stress protein family PF515_06925 PF00689 Cation transporting ATPase, C-terminus PF515_06925 PF00690 Cation transporter/ATPase, N-terminus PF515_06930 PF02308 MgtC family PF515_06935 PF03594 Benzoate membrane transport protein PF515_06940 PF01037 Lrp/AsnC ligand binding domain PF515_06945 PF01810 LysE type translocator PF515_06950 PF00923 Transaldolase/Fructose-6-phosphate aldolase PF515_06955 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family PF515_06955 PF03466 LysR substrate binding domain PF515_06965 PF02803 Thiolase, C-terminal domain PF515_06965 PF00108 Thiolase, N-terminal domain PF515_06975 PF01575 MaoC like domain PF515_06980 PF00144 Beta-lactamase PF515_06990 PF07690 Major Facilitator Superfamily PF515_06995 PF12169 DNA polymerase III subunits gamma and tau domain III PF515_06995 PF12168 DNA polymerase III subunits tau domain IV DnaB-binding PF515_06995 PF12170 DNA polymerase III tau subunit V interacting with alpha PF515_07000 PF05506 Domain of unknown function (DUF756) PF515_07000 PF04185 Phosphoesterase family PF515_07005 PF03061 Thioesterase superfamily PF515_07010 PF00465 Iron-containing alcohol dehydrogenase PF515_07020 PF01451 Low molecular weight phosphotyrosine protein phosphatase PF515_07025 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain PF515_07025 PF01565 FAD binding domain PF515_07040 PF01645 Conserved region in glutamate synthase PF515_07150 PF00772 DnaB-like helicase N terminal domain PF515_07150 PF03796 DnaB-like helicase C terminal domain PF515_07150 PF14528 LAGLIDADG-like domain PF515_07365 PF01551 Peptidase family M23 PF515_07365 PF01476 LysM domain PF515_07365 PF08525 Opacity-associated protein A N-terminal motif PF515_07410 PF00884 Sulfatase PF515_07410 PF08019 Phosphoethanolamine transferase EptA/EptB PF515_07450 PF00557 Metallopeptidase family M24 PF515_07450 PF05195 Aminopeptidase P, N-terminal domain PF515_07455 PF01494 FAD binding domain PF515_07460 PF01494 FAD binding domain PF515_07470 PF13411 MerR HTH family regulatory protein PF515_07480 PF01810 LysE type translocator PF515_07485 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family PF515_07485 PF03466 LysR substrate binding domain PF515_07495 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases PF515_07500 PF02021 Uncharacterised protein family UPF0102 PF515_07505 PF04972 BON domain PF515_07515 PF09297 NADH pyrophosphatase zinc ribbon domain PF515_07515 PF00293 NUDIX domain PF515_07525 PF00929 Exonuclease PF515_07530 PF01464 Transglycosylase SLT domain PF515_07530 PF01476 LysM domain PF515_07530 PF01464 Transglycosylase SLT domain PF515_07530 PF01476 LysM domain PF515_07535 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle PF515_07540 PF00528 Binding-protein-dependent transport system inner membrane component PF515_07545 PF00528 Binding-protein-dependent transport system inner membrane component PF515_07545 PF12911 N-terminal TM domain of oligopeptide transport permease C PF515_07550 PF00005 ABC transporter PF515_07550 PF08352 Oligopeptide/dipeptide transporter, C-terminal region PF515_07555 PF07992 Pyridine nucleotide-disulphide oxidoreductase PF515_07555 PF00724 NADH:flavin oxidoreductase / NADH oxidase family PF515_07560 PF00593 TonB dependent receptor PF515_07560 PF07715 TonB-dependent Receptor Plug Domain PF515_07570 PF00929 Exonuclease PF515_07575 PF01979 Amidohydrolase family PF515_07580 PF00563 EAL domain PF515_07580 PF01590 GAF domain PF515_07580 PF00990 Diguanylate cyclase, GGDEF domain PF515_07580 PF00360 Phytochrome region PF515_07585 PF00764 Arginosuccinate synthase PF515_07590 PF07992 Pyridine nucleotide-disulphide oxidoreductase PF515_07590 PF00724 NADH:flavin oxidoreductase / NADH oxidase family PF515_07605 PF13610 DDE domain PF515_07610 PF00239 Resolvase, N terminal domain PF515_07610 PF02796 Helix-turn-helix domain of resolvase PF515_07620 PF13610 DDE domain PF515_07630 PF00239 Resolvase, N terminal domain PF515_07630 PF02796 Helix-turn-helix domain of resolvase PF515_07635 PF13610 DDE domain PF515_07645 PF01636 Phosphotransferase enzyme family PF515_07650 PF13610 DDE domain PF515_07655 PF00440 Bacterial regulatory proteins, tetR family PF515_07655 PF17932 Tetracyclin repressor-like, C-terminal domain PF515_07660 PF02678 Pirin PF515_07660 PF17954 Quercetinase C-terminal cupin domain PF515_07670 PF00106 short chain dehydrogenase PF515_07675 PF00743 Flavin-binding monooxygenase-like PF515_07685 PF00860 Permease family PF515_07690 PF00962 Adenosine/AMP deaminase PF515_07695 PF01292 Prokaryotic cytochrome b561 PF515_07705 PF01351 Ribonuclease HII PF515_07710 PF02599 Global regulator protein family PF515_07715 PF00696 Amino acid kinase family PF515_07715 PF01842 ACT domain PF515_07715 PF13840 ACT domain PF515_07720 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain PF515_07720 PF01411 tRNA synthetases class II (A) PF515_07720 PF02272 DHHA1 domain PF515_07725 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain PF515_07725 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain PF515_07730 PF13393 Histidyl-tRNA synthetase PF515_07735 PF00709 Adenylosuccinate synthetase PF515_07750 PF00248 Aldo/keto reductase family PF515_07760 PF00027 Cyclic nucleotide-binding domain PF515_07760 PF13545 Crp-like helix-turn-helix domain PF515_07770 PF02566 OsmC-like protein PF515_07785 PF00004 ATPase family associated with various cellular activities (AAA) PF515_07785 PF07724 AAA domain (Cdc48 subfamily) PF515_07785 PF17871 AAA lid domain PF515_07785 PF02861 Clp amino terminal domain, pathogenicity island component PF515_07785 PF10431 C-terminal, D2-small domain, of ClpB protein PF515_07800 PF01170 Putative RNA methylase family UPF0020 PF515_07800 PF02926 THUMP domain PF515_07800 PF10672 S-adenosylmethionine-dependent methyltransferase PF515_07810 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain PF515_07810 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain PF515_07815 PF01979 Amidohydrolase family PF515_07820 PF13488 Glycine zipper PF515_07820 PF00691 OmpA family PF515_07830 PF13417 Glutathione S-transferase, N-terminal domain PF515_07830 PF00043 Glutathione S-transferase, C-terminal domain PF515_07835 PF02390 Putative methyltransferase PF515_07845 PF02798 Glutathione S-transferase, N-terminal domain PF515_07845 PF00043 Glutathione S-transferase, C-terminal domain PF515_07855 PF07992 Pyridine nucleotide-disulphide oxidoreductase PF515_07855 PF13192 Thioredoxin domain PF515_07875 PF10417 C-terminal domain of 1-Cys peroxiredoxin PF515_07875 PF00578 AhpC/TSA family PF515_07880 PF11898 Domain of unknown function (DUF3418) PF515_07880 PF00270 DEAD/DEAH box helicase PF515_07880 PF04408 Helicase associated domain (HA2) PF515_07880 PF00271 Helicase conserved C-terminal domain PF515_07880 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold PF515_07885 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal PF515_07885 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III PF515_07895 PF07690 Major Facilitator Superfamily PF515_07900 PF03594 Benzoate membrane transport protein PF515_07905 PF00106 short chain dehydrogenase PF515_07910 PF00970 Oxidoreductase FAD-binding domain PF515_07910 PF00111 2Fe-2S iron-sulfur cluster binding domain PF515_07910 PF00175 Oxidoreductase NAD-binding domain PF515_07915 PF00866 Ring hydroxylating beta subunit PF515_07920 PF00355 Rieske [2Fe-2S] domain PF515_07920 PF00848 Ring hydroxylating alpha subunit (catalytic domain) PF515_07930 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family PF515_07930 PF03466 LysR substrate binding domain PF515_07940 PF00403 Heavy-metal-associated domain PF515_07945 PF00376 MerR family regulatory protein PF515_07945 PF09278 MerR, DNA binding PF515_07980 PF13742 OB-fold nucleic acid binding domain PF515_07980 PF02601 Exonuclease VII, large subunit PF515_08010 PF01810 LysE type translocator PF515_08015 PF00313 'Cold-shock' DNA-binding domain PF515_08025 PF14748 Pyrroline-5-carboxylate reductase dimerisation PF515_08025 PF03807 NADP oxidoreductase coenzyme F420-dependent PF515_08050 PF07690 Major Facilitator Superfamily PF515_08055 PF01638 HxlR-like helix-turn-helix PF515_08080 PF09190 DALR domain PF515_08080 PF01406 tRNA synthetases class I (C) catalytic domain PF515_08085 PF00571 CBS domain PF515_08085 PF01380 SIS domain PF515_08100 PF03968 OstA-like protein PF515_08105 PF12399 Branched-chain amino acid ATP-binding cassette transporter PF515_08105 PF00005 ABC transporter PF515_08110 PF02321 Outer membrane efflux protein PF515_08115 PF00664 ABC transporter transmembrane region PF515_08115 PF00005 ABC transporter PF515_08115 PF03412 Peptidase C39 family PF515_08125 PF01205 Uncharacterized protein family UPF0029 PF515_08130 PF00132 Bacterial transferase hexapeptide (six repeats) PF515_08140 PF01596 O-methyltransferase PF515_08150 PF11953 Domain of unknown function (DUF3470) PF515_08150 PF00037 4Fe-4S binding domain PF515_08160 PF00488 MutS domain V PF515_08160 PF05192 MutS domain III PF515_08160 PF05188 MutS domain II PF515_08160 PF01624 MutS domain I PF515_08160 PF05190 MutS family domain IV PF515_08165 PF01037 Lrp/AsnC ligand binding domain PF515_08170 PF00892 EamA-like transporter family PF515_08175 PF00563 EAL domain PF515_08175 PF03707 Bacterial signalling protein N terminal repeat PF515_08175 PF00990 Diguanylate cyclase, GGDEF domain PF515_08180 PF03279 Bacterial lipid A biosynthesis acyltransferase PF515_08195 PF07690 Major Facilitator Superfamily PF515_08215 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain PF515_08215 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain PF515_08235 PF13419 Haloacid dehalogenase-like hydrolase PF515_08245 PF10106 Uncharacterized protein conserved in bacteria (DUF2345) PF515_08245 PF13296 Putative type VI secretion system Rhs element Vgr PF515_08245 PF04717 Type VI secretion system, phage-baseplate injector PF515_08250 PF03527 RHS protein PF515_08250 PF05593 RHS Repeat PF515_08265 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family PF515_08265 PF03466 LysR substrate binding domain PF515_08270 PF01566 Natural resistance-associated macrophage protein PF515_08275 PF03746 LamB/YcsF family PF515_08280 PF07286 Protein of unknown function (DUF1445) PF515_08290 PF00364 Biotin-requiring enzyme PF515_08290 PF02785 Biotin carboxylase C-terminal domain PF515_08290 PF00289 Biotin carboxylase, N-terminal domain PF515_08290 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain PF515_08295 PF00654 Voltage gated chloride channel PF515_08315 PF00440 Bacterial regulatory proteins, tetR family PF515_08325 PF08240 Alcohol dehydrogenase GroES-like domain PF515_08325 PF13823 Alcohol dehydrogenase GroES-associated PF515_08325 PF00107 Zinc-binding dehydrogenase PF515_08340 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain PF515_08340 PF02785 Biotin carboxylase C-terminal domain PF515_08340 PF00289 Biotin carboxylase, N-terminal domain PF515_08345 PF02525 Flavodoxin-like fold PF515_08365 PF01402 Ribbon-helix-helix protein, copG family PF515_08365 PF08753 NikR C terminal nickel binding domain PF515_08370 PF01425 Amidase PF515_08375 PF00497 Bacterial extracellular solute-binding proteins, family 3 PF515_08380 PF00005 ABC transporter PF515_08405 PF05943 Type VI secretion protein, EvpB/VC_A0108, tail sheath PF515_08420 PF05947 Type VI secretion system, TssF PF515_08435 PF06761 Intracellular multiplication and human macrophage-killing PF515_08435 PF14331 ImcF-related N-terminal domain PF515_08435 PF06744 Type VI secretion protein IcmF C-terminal PF515_08445 PF01389 OmpA-like transmembrane domain PF515_08445 PF00691 OmpA family PF515_08455 PF07724 AAA domain (Cdc48 subfamily) PF515_08455 PF00004 ATPase family associated with various cellular activities (AAA) PF515_08455 PF17871 AAA lid domain PF515_08455 PF10431 C-terminal, D2-small domain, of ClpB protein PF515_08460 PF06812 ImpA, N-terminal, type VI secretion system PF515_08465 PF05936 Bacterial Type VI secretion, VC_A0110, EvfL, ImpJ, VasE PF515_08485 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family PF515_08485 PF03466 LysR substrate binding domain PF515_08495 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region PF515_08500 PF07690 Major Facilitator Superfamily PF515_08515 PF02677 Epoxyqueuosine reductase QueH PF515_08530 PF09278 MerR, DNA binding PF515_08530 PF00376 MerR family regulatory protein PF515_08540 PF00701 Dihydrodipicolinate synthetase family PF515_08550 PF00392 Bacterial regulatory proteins, gntR family PF515_08555 PF05544 Proline racemase PF515_08560 PF01266 FAD dependent oxidoreductase PF515_08570 PF04324 BFD-like [2Fe-2S] binding domain PF515_08570 PF07992 Pyridine nucleotide-disulphide oxidoreductase PF515_08580 PF00083 Sugar (and other) transporter PF515_08585 PF00171 Aldehyde dehydrogenase family PF515_08590 PF13520 Amino acid permease PF515_08595 PF03315 Serine dehydratase beta chain PF515_08595 PF03313 Serine dehydratase alpha chain PF515_08600 PF00171 Aldehyde dehydrogenase family PF515_08600 PF01575 MaoC like domain PF515_08605 PF05138 Phenylacetic acid catabolic protein PF515_08610 PF06243 Phenylacetic acid degradation B PF515_08615 PF05138 Phenylacetic acid catabolic protein PF515_08620 PF01883 Iron-sulfur cluster assembly protein PF515_08625 PF00970 Oxidoreductase FAD-binding domain PF515_08625 PF00111 2Fe-2S iron-sulfur cluster binding domain PF515_08625 PF00175 Oxidoreductase NAD-binding domain PF515_08630 PF00378 Enoyl-CoA hydratase/isomerase PF515_08635 PF00378 Enoyl-CoA hydratase/isomerase PF515_08640 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain PF515_08640 PF18321 3-hydroxybutyryl-CoA dehydrogenase reduced Rossmann-fold domain PF515_08640 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain PF515_08645 PF02803 Thiolase, C-terminal domain PF515_08645 PF00108 Thiolase, N-terminal domain PF515_08650 PF00501 AMP-binding enzyme PF515_08650 PF14535 AMP-binding enzyme C-terminal domain PF515_08655 PF07848 PaaX-like protein PF515_08655 PF08223 PaaX-like protein C-terminal domain PF515_08660 PF00132 Bacterial transferase hexapeptide (six repeats) PF515_08665 PF03061 Thioesterase superfamily PF515_08695 PF00199 Catalase PF515_08700 PF01292 Prokaryotic cytochrome b561 PF515_08720 PF12697 Alpha/beta hydrolase family PF515_08725 PF01613 Flavin reductase like domain PF515_08730 PF00296 Luciferase-like monooxygenase PF515_08735 PF00171 Aldehyde dehydrogenase family PF515_08745 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin PF515_08755 PF00171 Aldehyde dehydrogenase family PF515_08760 PF02627 Carboxymuconolactone decarboxylase family PF515_08765 PF03466 LysR substrate binding domain PF515_08765 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family PF515_08770 PF02525 Flavodoxin-like fold PF515_08775 PF09339 IclR helix-turn-helix domain PF515_08775 PF01614 Bacterial transcriptional regulator PF515_08780 PF01494 FAD binding domain PF515_08785 PF00392 Bacterial regulatory proteins, gntR family PF515_08785 PF07702 UTRA domain PF515_08795 PF00005 ABC transporter PF515_08795 PF08402 TOBE domain PF515_08800 PF00528 Binding-protein-dependent transport system inner membrane component PF515_08805 PF01266 FAD dependent oxidoreductase PF515_08810 PF00266 Aminotransferase class-V PF515_08815 PF13419 Haloacid dehalogenase-like hydrolase PF515_08820 PF07690 Major Facilitator Superfamily PF515_08825 PF02771 Acyl-CoA dehydrogenase, N-terminal domain PF515_08825 PF02770 Acyl-CoA dehydrogenase, middle domain PF515_08825 PF00441 Acyl-CoA dehydrogenase, C-terminal domain PF515_08830 PF02515 CoA-transferase family III PF515_08835 PF09339 IclR helix-turn-helix domain PF515_08840 PF00378 Enoyl-CoA hydratase/isomerase PF515_08845 PF03060 Nitronate monooxygenase PF515_08850 PF07690 Major Facilitator Superfamily PF515_08855 PF09339 IclR helix-turn-helix domain PF515_08860 PF02803 Thiolase, C-terminal domain PF515_08860 PF00108 Thiolase, N-terminal domain PF515_08865 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain PF515_08865 PF18321 3-hydroxybutyryl-CoA dehydrogenase reduced Rossmann-fold domain PF515_08865 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain PF515_08875 PF00378 Enoyl-CoA hydratase/isomerase PF515_08880 PF00441 Acyl-CoA dehydrogenase, C-terminal domain PF515_08880 PF02770 Acyl-CoA dehydrogenase, middle domain PF515_08880 PF02771 Acyl-CoA dehydrogenase, N-terminal domain PF515_08885 PF07690 Major Facilitator Superfamily PF515_08890 PF01144 Coenzyme A transferase PF515_08895 PF01144 Coenzyme A transferase PF515_08905 PF07690 Major Facilitator Superfamily PF515_08915 PF02771 Acyl-CoA dehydrogenase, N-terminal domain PF515_08915 PF02770 Acyl-CoA dehydrogenase, middle domain PF515_08915 PF12806 Acetyl-CoA dehydrogenase C-terminal like PF515_08915 PF00441 Acyl-CoA dehydrogenase, C-terminal domain PF515_08930 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family PF515_08930 PF03466 LysR substrate binding domain PF515_08935 PF00682 HMGL-like PF515_08940 PF18140 Propionyl-coenzyme A carboxylase BT domain PF515_08940 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain PF515_08940 PF00364 Biotin-requiring enzyme PF515_08940 PF00289 Biotin carboxylase, N-terminal domain PF515_08940 PF02785 Biotin carboxylase C-terminal domain PF515_08945 PF00378 Enoyl-CoA hydratase/isomerase PF515_08950 PF01039 Carboxyl transferase domain PF515_08955 PF02771 Acyl-CoA dehydrogenase, N-terminal domain PF515_08955 PF02770 Acyl-CoA dehydrogenase, middle domain PF515_08955 PF00441 Acyl-CoA dehydrogenase, C-terminal domain PF515_08960 PF00440 Bacterial regulatory proteins, tetR family PF515_08965 PF00501 AMP-binding enzyme PF515_08965 PF13193 AMP-binding enzyme C-terminal domain PF515_08985 PF03466 LysR substrate binding domain PF515_08985 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family PF515_09020 PF18146 Damage-inducible protein CinA KH domain PF515_09020 PF02464 Competence-damaged protein PF515_09020 PF00994 Probable molybdopterin binding domain PF515_09030 PF00199 Catalase PF515_09030 PF06628 Catalase-related immune-responsive PF515_09030 PF18011 C-terminal domain found in long catalases PF515_09055 PF00717 Peptidase S24-like PF515_09065 PF01037 Lrp/AsnC ligand binding domain PF515_09065 PF13404 AsnC-type helix-turn-helix domain PF515_09075 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PF515_09075 PF00512 His Kinase A (phospho-acceptor) domain PF515_09075 PF00072 Response regulator receiver domain PF515_09075 PF09308 LuxQ, periplasmic PF515_09080 PF00072 Response regulator receiver domain PF515_09095 PF00528 Binding-protein-dependent transport system inner membrane component PF515_09100 PF00528 Binding-protein-dependent transport system inner membrane component PF515_09105 PF00005 ABC transporter PF515_09110 PF00497 Bacterial extracellular solute-binding proteins, family 3 PF515_09115 PF00497 Bacterial extracellular solute-binding proteins, family 3 PF515_09125 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family PF515_09125 PF03466 LysR substrate binding domain PF515_09130 PF01810 LysE type translocator PF515_09140 PF00266 Aminotransferase class-V PF515_09150 PF00132 Bacterial transferase hexapeptide (six repeats) PF515_09155 PF00581 Rhodanese-like domain PF515_09165 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family PF515_09165 PF03466 LysR substrate binding domain PF515_09170 PF02798 Glutathione S-transferase, N-terminal domain PF515_09175 PF14834 Glutathione S-transferase, C-terminal domain PF515_09175 PF02798 Glutathione S-transferase, N-terminal domain PF515_09180 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family PF515_09180 PF03466 LysR substrate binding domain PF515_09185 PF03788 LrgA family PF515_09190 PF04172 LrgB-like family PF515_09195 PF00155 Aminotransferase class I and II PF515_09195 PF00392 Bacterial regulatory proteins, gntR family PF515_09210 PF07690 Major Facilitator Superfamily PF515_09215 PF16957 Malonate decarboxylase, alpha subunit, transporter PF515_09220 PF01874 ATP:dephospho-CoA triphosphoribosyl transferase PF515_09225 PF06857 Malonate decarboxylase delta subunit (MdcD) PF515_09230 PF01039 Carboxyl transferase domain PF515_09240 PF10620 Phosphoribosyl-dephospho-CoA transferase MdcG PF515_09245 PF00698 Acyl transferase domain PF515_09260 PF03466 LysR substrate binding domain PF515_09260 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family PF515_09265 PF00392 Bacterial regulatory proteins, gntR family PF515_09265 PF00155 Aminotransferase class I and II PF515_09275 PF02322 Cytochrome bd terminal oxidase subunit II PF515_09280 PF01654 Cytochrome bd terminal oxidase subunit I PF515_09290 PF02771 Acyl-CoA dehydrogenase, N-terminal domain PF515_09290 PF08028 Acyl-CoA dehydrogenase, C-terminal domain PF515_09290 PF02770 Acyl-CoA dehydrogenase, middle domain PF515_09295 PF00296 Luciferase-like monooxygenase PF515_09300 PF00083 Sugar (and other) transporter PF515_09310 PF04069 Substrate binding domain of ABC-type glycine betaine transport system PF515_09315 PF00005 ABC transporter PF515_09320 PF00528 Binding-protein-dependent transport system inner membrane component PF515_09325 PF02668 Taurine catabolism dioxygenase TauD, TfdA family PF515_09330 PF01177 Asp/Glu/Hydantoin racemase PF515_09335 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin PF515_09345 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family PF515_09345 PF03466 LysR substrate binding domain PF515_09355 PF13382 Adenine deaminase C-terminal domain PF515_09355 PF01979 Amidohydrolase family PF515_09365 PF03960 ArsC family PF515_09370 PF01022 Bacterial regulatory protein, arsR family PF515_09375 PF01758 Sodium Bile acid symporter family PF515_09380 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family PF515_09380 PF03466 LysR substrate binding domain PF515_09395 PF13192 Thioredoxin domain PF515_09395 PF07992 Pyridine nucleotide-disulphide oxidoreductase PF515_09410 PF00132 Bacterial transferase hexapeptide (six repeats) PF515_09415 PF00588 SpoU rRNA Methylase family PF515_09420 PF01336 OB-fold nucleic acid binding domain PF515_09420 PF02811 PHP domain PF515_09420 PF07733 Bacterial DNA polymerase III alpha NTPase domain PF515_09420 PF17657 Bacterial DNA polymerase III alpha subunit finger domain PF515_09420 PF14579 Helix-hairpin-helix motif PF515_09425 PF17763 Glutaminase/Asparaginase C-terminal domain PF515_09425 PF00710 Asparaginase, N-terminal PF515_09430 PF00375 Sodium:dicarboxylate symporter family PF515_09435 PF00155 Aminotransferase class I and II PF515_09440 PF01641 SelR domain PF515_09445 PF00255 Glutathione peroxidase PF515_09450 PF12852 Cupin PF515_09450 PF12833 Helix-turn-helix domain PF515_09460 PF00155 Aminotransferase class I and II PF515_09465 PF08335 GlnD PII-uridylyltransferase PF515_09465 PF01909 Nucleotidyltransferase domain PF515_09465 PF01966 HD domain PF515_09470 PF02222 ATP-grasp domain PF515_09480 PF05437 Branched-chain amino acid transport protein (AzlD) PF515_09485 PF03591 AzlC protein PF515_09510 PF01926 50S ribosome-binding GTPase PF515_09510 PF06071 Protein of unknown function (DUF933) PF515_09515 PF00528 Binding-protein-dependent transport system inner membrane component PF515_09520 PF00005 ABC transporter PF515_09520 PF09383 NIL domain PF515_09525 PF03180 NLPA lipoprotein PF515_09530 PF03180 NLPA lipoprotein PF515_09535 PF00296 Luciferase-like monooxygenase PF515_09545 PF02771 Acyl-CoA dehydrogenase, N-terminal domain PF515_09545 PF08028 Acyl-CoA dehydrogenase, C-terminal domain PF515_09560 PF00528 Binding-protein-dependent transport system inner membrane component PF515_09565 PF00528 Binding-protein-dependent transport system inner membrane component PF515_09570 PF00005 ABC transporter PF515_09580 PF01037 Lrp/AsnC ligand binding domain PF515_09585 PF01709 Transcriptional regulator PF515_09595 PF00440 Bacterial regulatory proteins, tetR family PF515_09615 PF03466 LysR substrate binding domain PF515_09615 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family PF515_09625 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin PF515_09635 PF00892 EamA-like transporter family PF515_09655 PF13954 PapC N-terminal domain PF515_09655 PF13953 PapC C-terminal domain PF515_09655 PF00577 Outer membrane usher protein PF515_09660 PF02753 Pili assembly chaperone PapD, C-terminal domain PF515_09660 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain PF515_09665 PF16970 Type-1 fimbrial protein, A PF515_09680 PF06968 Biotin and Thiamin Synthesis associated domain PF515_09680 PF04055 Radical SAM superfamily PF515_09685 PF08331 Domain of unknown function (DUF1730) PF515_09690 PF01256 Carbohydrate kinase PF515_09690 PF03853 YjeF-related protein N-terminus PF515_09695 PF02075 Crossover junction endodeoxyribonuclease RuvC PF515_09710 PF00905 Penicillin binding protein transpeptidase domain PF515_09730 PF00438 S-adenosylmethionine synthetase, N-terminal domain PF515_09730 PF02772 S-adenosylmethionine synthetase, central domain PF515_09730 PF02773 S-adenosylmethionine synthetase, C-terminal domain PF515_09735 PF00456 Transketolase, thiamine diphosphate binding domain PF515_09735 PF02780 Transketolase, C-terminal domain PF515_09735 PF02779 Transketolase, pyrimidine binding domain PF515_09745 PF04264 YceI-like domain PF515_09755 PF09992 Phosphodiester glycosidase PF515_09765 PF05958 tRNA (Uracil-5-)-methyltransferase PF515_09770 PF04229 GrpB protein PF515_09775 PF00171 Aldehyde dehydrogenase family PF515_09775 PF01619 Proline dehydrogenase PF515_09775 PF14850 DNA-binding domain of Proline dehydrogenase PF515_09775 PF18327 Proline utilization A proline dehydrogenase N-terminal domain PF515_09780 PF01037 Lrp/AsnC ligand binding domain PF515_09785 PF00474 Sodium:solute symporter family PF515_09790 PF02146 Sir2 family PF515_09795 PF01597 Glycine cleavage H-protein PF515_09800 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term PF515_09800 PF12833 Helix-turn-helix domain PF515_09810 PF00664 ABC transporter transmembrane region PF515_09810 PF00005 ABC transporter PF515_09815 PF09831 Uncharacterized protein conserved in bacteria (DUF2058) PF515_09820 PF06912 Protein of unknown function (DUF1275) PF515_09825 PF00375 Sodium:dicarboxylate symporter family PF515_09845 PF08007 Cupin superfamily protein PF515_09850 PF02545 Maf-like protein PF515_09860 PF00162 Phosphoglycerate kinase PF515_09870 PF01116 Fructose-bisphosphate aldolase class-II PF515_09875 PF09312 SurA N-terminal domain PF515_09875 PF00639 PPIC-type PPIASE domain PF515_09880 PF04453 LPS transport system D PF515_09880 PF03968 OstA-like protein PF515_09885 PF01636 Phosphotransferase enzyme family PF515_09890 PF00483 Nucleotidyl transferase PF515_09895 PF02527 rRNA small subunit methyltransferase G PF515_09900 PF13614 AAA domain PF515_09905 PF02195 ParB-like nuclease domain PF515_09905 PF17762 HTH domain found in ParB protein PF515_09910 PF01618 MotA/TolQ/ExbB proton channel family PF515_09920 PF00664 ABC transporter transmembrane region PF515_09920 PF00005 ABC transporter PF515_09925 PF02606 Tetraacyldisaccharide-1-P 4'-kinase PF515_09930 PF02348 Cytidylyltransferase PF515_09935 PF09115 DNA polymerase III, delta subunit, C terminal PF515_09945 PF01026 TatD related DNase PF515_09960 PF07963 Prokaryotic N-terminal methylation motif PF515_09960 PF02501 Type II secretion system (T2SS), protein I PF515_09965 PF07963 Prokaryotic N-terminal methylation motif PF515_09965 PF11612 Type II secretion system (T2SS), protein J PF515_09970 PF03934 Type II secretion system (T2SS), protein K PF515_09980 PF03167 Uracil DNA glycosylase superfamily PF515_09990 PF14437 MafB19-like deaminase PF515_10000 PF02224 Cytidylate kinase PF515_10005 PF00575 S1 RNA binding domain PF515_10010 PF00216 Bacterial DNA-binding protein PF515_10020 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family PF515_10045 PF00743 Flavin-binding monooxygenase-like PF515_10055 PF03969 AFG1-like ATPase PF515_10060 PF01274 Malate synthase PF515_10070 PF02472 Biopolymer transport protein ExbD/TolR PF515_10075 PF02472 Biopolymer transport protein ExbD/TolR PF515_10080 PF01618 MotA/TolQ/ExbB proton channel family PF515_10090 PF07715 TonB-dependent Receptor Plug Domain PF515_10090 PF00593 TonB dependent receptor PF515_10110 PF01432 Peptidase family M3 PF515_10115 PF00528 Binding-protein-dependent transport system inner membrane component PF515_10120 PF00528 Binding-protein-dependent transport system inner membrane component PF515_10125 PF00005 ABC transporter PF515_10125 PF08352 Oligopeptide/dipeptide transporter, C-terminal region PF515_10140 PF00459 Inositol monophosphatase family PF515_10150 PF01649 Ribosomal protein S20 PF515_10155 PF13460 NAD(P)H-binding PF515_10160 PF03737 Aldolase/RraA PF515_10180 PF03461 TRCF domain PF515_10180 PF02559 CarD-like/TRCF domain PF515_10180 PF00271 Helicase conserved C-terminal domain PF515_10180 PF00270 DEAD/DEAH box helicase PF515_10180 PF17757 UvrB interaction domain PF515_10190 PF00211 Adenylate and Guanylate cyclase catalytic domain PF515_10195 PF00111 2Fe-2S iron-sulfur cluster binding domain PF515_10200 PF00012 Hsp70 protein PF515_10205 PF07743 HSCB C-terminal oligomerisation domain PF515_10205 PF00226 DnaJ domain PF515_10210 PF01521 Iron-sulphur cluster biosynthesis PF515_10215 PF01592 NifU-like N terminal domain PF515_10220 PF00266 Aminotransferase class-V PF515_10225 PF02082 Transcriptional regulator PF515_10240 PF00216 Bacterial DNA-binding protein PF515_10245 PF09312 SurA N-terminal domain PF515_10245 PF00639 PPIC-type PPIASE domain PF515_10250 PF12852 Cupin PF515_10250 PF12833 Helix-turn-helix domain PF515_10255 PF00487 Fatty acid desaturase PF515_10260 PF02770 Acyl-CoA dehydrogenase, middle domain PF515_10260 PF00441 Acyl-CoA dehydrogenase, C-terminal domain PF515_10260 PF02771 Acyl-CoA dehydrogenase, N-terminal domain PF515_10265 PF02771 Acyl-CoA dehydrogenase, N-terminal domain PF515_10265 PF02770 Acyl-CoA dehydrogenase, middle domain PF515_10265 PF00441 Acyl-CoA dehydrogenase, C-terminal domain PF515_10270 PF03109 ABC1 family PF515_10280 PF04073 Aminoacyl-tRNA editing domain PF515_10285 PF04183 IucA / IucC family PF515_10285 PF06276 Ferric iron reductase FhuF-like transporter PF515_10290 PF13434 L-lysine 6-monooxygenase (NADPH-requiring) PF515_10295 PF07690 Major Facilitator Superfamily PF515_10300 PF06276 Ferric iron reductase FhuF-like transporter PF515_10300 PF04183 IucA / IucC family PF515_10305 PF06276 Ferric iron reductase FhuF-like transporter PF515_10305 PF04183 IucA / IucC family PF515_10320 PF07715 TonB-dependent Receptor Plug Domain PF515_10320 PF00593 TonB dependent receptor PF515_10345 PF13419 Haloacid dehalogenase-like hydrolase PF515_10355 PF02283 Cobinamide kinase / cobinamide phosphate guanyltransferase PF515_10360 PF02277 Phosphoribosyltransferase PF515_10375 PF02654 Cobalamin-5-phosphate synthase PF515_10380 PF00793 DAHP synthetase I family PF515_10385 PF01925 Sulfite exporter TauE/SafE PF515_10405 PF07715 TonB-dependent Receptor Plug Domain PF515_10405 PF00593 TonB dependent receptor PF515_10410 PF02684 Lipid-A-disaccharide synthetase PF515_10420 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion PF515_10425 PF00005 ABC transporter PF515_10460 PF01230 HIT domain PF515_10490 PF08241 Methyltransferase domain PF515_10495 PF00561 alpha/beta hydrolase fold PF515_10500 PF01053 Cys/Met metabolism PLP-dependent enzyme PF515_10510 PF02575 YbaB/EbfC DNA-binding family PF515_10515 PF02132 RecR protein PF515_10515 PF13662 Toprim domain PF515_10520 PF01612 3'-5' exonuclease PF515_10520 PF00570 HRDC domain PF515_10540 PF05166 YcgL domain PF515_10550 PF17862 AAA+ lid domain PF515_10550 PF01434 Peptidase family M41 PF515_10550 PF00004 ATPase family associated with various cellular activities (AAA) PF515_10560 PF00291 Pyridoxal-phosphate dependent enzyme PF515_10565 PF05175 Methyltransferase small domain PF515_10570 PF01264 Chorismate synthase PF515_10575 PF00990 Diguanylate cyclase, GGDEF domain PF515_10575 PF08448 PAS fold PF515_10590 PF04055 Radical SAM superfamily PF515_10595 PF00676 Dehydrogenase E1 component PF515_10600 PF02780 Transketolase, C-terminal domain PF515_10600 PF02779 Transketolase, pyrimidine binding domain PF515_10605 PF00364 Biotin-requiring enzyme PF515_10605 PF02817 e3 binding domain PF515_10605 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) PF515_10610 PF07992 Pyridine nucleotide-disulphide oxidoreductase PF515_10610 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain PF515_10615 PF00106 short chain dehydrogenase PF515_10620 PF00107 Zinc-binding dehydrogenase PF515_10620 PF08240 Alcohol dehydrogenase GroES-like domain PF515_10625 PF01062 Bestrophin, RFP-TM, chloride channel PF515_10630 PF00158 Sigma-54 interaction domain PF515_10630 PF02954 Bacterial regulatory protein, Fis family PF515_10630 PF00072 Response regulator receiver domain PF515_10635 PF00753 Metallo-beta-lactamase superfamily PF515_10635 PF04273 Putative phosphatase (DUF442) PF515_10650 PF01925 Sulfite exporter TauE/SafE PF515_10665 PF06445 GyrI-like small molecule binding domain PF515_10665 PF12833 Helix-turn-helix domain PF515_10670 PF01638 HxlR-like helix-turn-helix PF515_10675 PF02525 Flavodoxin-like fold PF515_10685 PF00392 Bacterial regulatory proteins, gntR family PF515_10685 PF07702 UTRA domain PF515_10700 PF04069 Substrate binding domain of ABC-type glycine betaine transport system PF515_10705 PF00528 Binding-protein-dependent transport system inner membrane component PF515_10710 PF00005 ABC transporter PF515_10725 PF00083 Sugar (and other) transporter PF515_10735 PF07715 TonB-dependent Receptor Plug Domain PF515_10735 PF00593 TonB dependent receptor PF515_10740 PF10415 Fumarase C C-terminus PF515_10740 PF00206 Lyase PF515_10755 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family PF515_10755 PF03466 LysR substrate binding domain PF515_10760 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family PF515_10760 PF03466 LysR substrate binding domain PF515_10765 PF00108 Thiolase, N-terminal domain PF515_10765 PF02803 Thiolase, C-terminal domain PF515_10770 PF02667 Short chain fatty acid transporter PF515_10775 PF01144 Coenzyme A transferase PF515_10780 PF01144 Coenzyme A transferase PF515_10785 PF03466 LysR substrate binding domain PF515_10785 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family PF515_10810 PF12833 Helix-turn-helix domain PF515_10810 PF06719 AraC-type transcriptional regulator N-terminus PF515_10820 PF01738 Dienelactone hydrolase family PF515_10835 PF01613 Flavin reductase like domain PF515_10845 PF12833 Helix-turn-helix domain PF515_10845 PF14525 AraC-binding-like domain PF515_10850 PF00970 Oxidoreductase FAD-binding domain PF515_10850 PF00175 Oxidoreductase NAD-binding domain PF515_10850 PF00111 2Fe-2S iron-sulfur cluster binding domain PF515_10855 PF00866 Ring hydroxylating beta subunit PF515_10860 PF00848 Ring hydroxylating alpha subunit (catalytic domain) PF515_10860 PF00355 Rieske [2Fe-2S] domain PF515_10865 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family PF515_10865 PF03459 TOBE domain PF515_10875 PF00528 Binding-protein-dependent transport system inner membrane component PF515_10880 PF03459 TOBE domain PF515_10880 PF00005 ABC transporter PF515_10885 PF00106 short chain dehydrogenase PF515_10890 PF00550 Phosphopantetheine attachment site PF515_10890 PF00857 Isochorismatase family PF515_10900 PF00149 Calcineurin-like phosphoesterase PF515_10905 PF17941 Polyphosphate kinase C-terminal domain 1 PF515_10905 PF13089 Polyphosphate kinase N-terminal domain PF515_10905 PF13090 Polyphosphate kinase C-terminal domain 2 PF515_10905 PF02503 Polyphosphate kinase middle domain PF515_10910 PF08042 PqqA family PF515_10915 PF12706 Beta-lactamase superfamily domain PF515_10920 PF03070 TENA/THI-4/PQQC family PF515_10925 PF05402 Coenzyme PQQ synthesis protein D (PqqD) PF515_10930 PF13186 Iron-sulfur cluster-binding domain PF515_10930 PF04055 Radical SAM superfamily PF515_10935 PF01244 Membrane dipeptidase (Peptidase family M19) PF515_10950 PF13091 PLD-like domain PF515_10965 PF00199 Catalase PF515_10975 PF08240 Alcohol dehydrogenase GroES-like domain PF515_10975 PF00107 Zinc-binding dehydrogenase PF515_10985 PF00419 Fimbrial protein PF515_10990 PF00577 Outer membrane usher protein PF515_10990 PF13953 PapC C-terminal domain PF515_10990 PF13954 PapC N-terminal domain PF515_10995 PF02753 Pili assembly chaperone PapD, C-terminal domain PF515_10995 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain PF515_11005 PF16970 Type-1 fimbrial protein, A PF515_11025 PF01266 FAD dependent oxidoreductase PF515_11040 PF01593 Flavin containing amine oxidoreductase PF515_11045 PF00743 Flavin-binding monooxygenase-like PF515_11050 PF12146 Serine aminopeptidase, S33 PF515_11055 PF02321 Outer membrane efflux protein PF515_11060 PF00873 AcrB/AcrD/AcrF family PF515_11065 PF00529 HlyD membrane-fusion protein of T1SS PF515_11065 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion PF515_11070 PF00072 Response regulator receiver domain PF515_11070 PF00486 Transcriptional regulatory protein, C terminal PF515_11075 PF16527 Two-component sensor protein CpxA, periplasmic domain PF515_11075 PF00672 HAMP domain PF515_11075 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PF515_11075 PF00512 His Kinase A (phospho-acceptor) domain PF515_11085 PF02311 AraC-like ligand binding domain PF515_11085 PF12833 Helix-turn-helix domain PF515_11090 PF12146 Serine aminopeptidase, S33 PF515_11140 PF04607 Region found in RelA / SpoT proteins PF515_11140 PF02824 TGS domain PF515_11140 PF13291 ACT domain PF515_11150 PF01975 Survival protein SurE PF515_11175 PF07690 Major Facilitator Superfamily PF515_11180 PF13533 Biotin-lipoyl like PF515_11185 PF01425 Amidase PF515_11190 PF00196 Bacterial regulatory proteins, luxR family PF515_11265 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family PF515_11270 PF14572 Phosphoribosyl synthetase-associated domain PF515_11270 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase PF515_11290 PF00005 ABC transporter PF515_11295 PF01032 FecCD transport family PF515_11305 PF00107 Zinc-binding dehydrogenase PF515_11305 PF08240 Alcohol dehydrogenase GroES-like domain PF515_11320 PF12833 Helix-turn-helix domain PF515_11320 PF06719 AraC-type transcriptional regulator N-terminus PF515_11325 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase PF515_11325 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase PF515_11330 PF07690 Major Facilitator Superfamily PF515_11335 PF01370 NAD dependent epimerase/dehydratase family PF515_11340 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family PF515_11340 PF03466 LysR substrate binding domain PF515_11350 PF00920 Dehydratase family PF515_11355 PF00171 Aldehyde dehydrogenase family PF515_11370 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion PF515_11370 PF00529 HlyD membrane-fusion protein of T1SS PF515_11405 PF03737 Aldolase/RraA PF515_11410 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain PF515_11410 PF01842 ACT domain PF515_11410 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain PF515_11415 PF07690 Major Facilitator Superfamily PF515_11435 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family PF515_11435 PF03466 LysR substrate binding domain PF515_11445 PF08450 SMP-30/Gluconolactonase/LRE-like region PF515_11450 PF00392 Bacterial regulatory proteins, gntR family PF515_11450 PF07702 UTRA domain PF515_11460 PF04909 Amidohydrolase PF515_11480 PF13332 Hemagglutinin repeat PF515_11480 PF05860 haemagglutination activity domain PF515_11480 PF04829 Pre-toxin domain with VENN motif PF515_11480 PF13018 Extended Signal Peptide of Type V secretion system PF515_11485 PF08479 POTRA domain, ShlB-type PF515_11485 PF17287 POTRA domain PF515_11485 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB PF515_11495 PF07687 Peptidase dimerisation domain PF515_11495 PF01546 Peptidase family M20/M25/M40 PF515_11505 PF02254 TrkA-N domain PF515_11505 PF00999 Sodium/hydrogen exchanger family PF515_11510 PF07995 Glucose / Sorbosone dehydrogenase PF515_11515 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family PF515_11515 PF03466 LysR substrate binding domain PF515_11520 PF00857 Isochorismatase family PF515_11530 PF00440 Bacterial regulatory proteins, tetR family PF515_11530 PF08359 YsiA-like protein, C-terminal region PF515_11535 PF12706 Beta-lactamase superfamily domain PF515_11545 PF07992 Pyridine nucleotide-disulphide oxidoreductase PF515_11555 PF00376 MerR family regulatory protein PF515_11555 PF09278 MerR, DNA binding PF515_11560 PF01872 RibD C-terminal domain PF515_11565 PF00106 short chain dehydrogenase PF515_11570 PF00724 NADH:flavin oxidoreductase / NADH oxidase family PF515_11570 PF07992 Pyridine nucleotide-disulphide oxidoreductase PF515_11575 PF01047 MarR family PF515_11580 PF07859 alpha/beta hydrolase fold PF515_11595 PF00199 Catalase PF515_11595 PF06628 Catalase-related immune-responsive PF515_11600 PF00561 alpha/beta hydrolase fold PF515_11610 PF00171 Aldehyde dehydrogenase family PF515_11615 PF00107 Zinc-binding dehydrogenase PF515_11615 PF08240 Alcohol dehydrogenase GroES-like domain PF515_11620 PF00474 Sodium:solute symporter family PF515_11625 PF04341 Protein of unknown function, DUF485 PF515_11630 PF00501 AMP-binding enzyme PF515_11630 PF13193 AMP-binding enzyme C-terminal domain PF515_11635 PF02954 Bacterial regulatory protein, Fis family PF515_11635 PF06506 Propionate catabolism activator PF515_11635 PF00158 Sigma-54 interaction domain PF515_11645 PF00441 Acyl-CoA dehydrogenase, C-terminal domain PF515_11645 PF02770 Acyl-CoA dehydrogenase, middle domain PF515_11645 PF02771 Acyl-CoA dehydrogenase, N-terminal domain PF515_11665 PF00171 Aldehyde dehydrogenase family PF515_11675 PF07690 Major Facilitator Superfamily PF515_11680 PF00920 Dehydratase family PF515_11685 PF07729 FCD domain PF515_11685 PF00392 Bacterial regulatory proteins, gntR family PF515_11695 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family PF515_11695 PF03466 LysR substrate binding domain PF515_11700 PF13378 Enolase C-terminal domain-like PF515_11700 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain PF515_11705 PF02426 Muconolactone delta-isomerase PF515_11710 PF00775 Dioxygenase PF515_11710 PF04444 Catechol dioxygenase N terminus PF515_11715 PF01144 Coenzyme A transferase PF515_11720 PF01144 Coenzyme A transferase PF515_11725 PF00108 Thiolase, N-terminal domain PF515_11725 PF02803 Thiolase, C-terminal domain PF515_11730 PF12146 Serine aminopeptidase, S33 PF515_11735 PF01804 Penicillin amidase PF515_11740 PF00171 Aldehyde dehydrogenase family PF515_11750 PF02728 Copper amine oxidase, N3 domain PF515_11750 PF02727 Copper amine oxidase, N2 domain PF515_11750 PF07833 Copper amine oxidase N-terminal domain PF515_11750 PF01179 Copper amine oxidase, enzyme domain PF515_11755 PF02311 AraC-like ligand binding domain PF515_11755 PF12833 Helix-turn-helix domain PF515_11760 PF01613 Flavin reductase like domain PF515_11765 PF00111 2Fe-2S iron-sulfur cluster binding domain PF515_11765 PF00175 Oxidoreductase NAD-binding domain PF515_11780 PF00355 Rieske [2Fe-2S] domain PF515_11780 PF00848 Ring hydroxylating alpha subunit (catalytic domain) PF515_11795 PF08028 Acyl-CoA dehydrogenase, C-terminal domain PF515_11800 PF01425 Amidase PF515_11810 PF07690 Major Facilitator Superfamily PF515_11820 PF00106 short chain dehydrogenase PF515_11835 PF02771 Acyl-CoA dehydrogenase, N-terminal domain PF515_11835 PF00441 Acyl-CoA dehydrogenase, C-terminal domain PF515_11835 PF02770 Acyl-CoA dehydrogenase, middle domain PF515_11840 PF03466 LysR substrate binding domain PF515_11840 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family PF515_11845 PF09339 IclR helix-turn-helix domain PF515_11845 PF01614 Bacterial transcriptional regulator PF515_11850 PF00753 Metallo-beta-lactamase superfamily PF515_11860 PF04143 Sulphur transport PF515_11870 PF13360 PQQ-like domain PF515_11870 PF01011 PQQ enzyme repeat PF515_11875 PF04966 Carbohydrate-selective porin, OprB family PF515_11880 PF05048 Periplasmic copper-binding protein (NosD) PF515_11885 PF01487 Type I 3-dehydroquinase PF515_11890 PF00775 Dioxygenase PF515_11895 PF12391 Protocatechuate 3,4-dioxygenase beta subunit N terminal PF515_11895 PF00775 Dioxygenase PF515_11900 PF02627 Carboxymuconolactone decarboxylase family PF515_11905 PF07690 Major Facilitator Superfamily PF515_11910 PF00561 alpha/beta hydrolase fold PF515_11915 PF10397 Adenylosuccinate lyase C-terminus PF515_11915 PF00206 Lyase PF515_11920 PF00108 Thiolase, N-terminal domain PF515_11920 PF02803 Thiolase, C-terminal domain PF515_11925 PF01144 Coenzyme A transferase PF515_11930 PF01144 Coenzyme A transferase PF515_11935 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase PF515_11940 PF04977 Septum formation initiator PF515_11945 PF04239 Protein of unknown function (DUF421) PF515_11950 PF03952 Enolase, N-terminal domain PF515_11950 PF00113 Enolase, C-terminal TIM barrel domain PF515_11955 PF00793 DAHP synthetase I family PF515_11960 PF06418 CTP synthase N-terminus PF515_11960 PF00117 Glutamine amidotransferase class-I PF515_11990 PF00724 NADH:flavin oxidoreductase / NADH oxidase family PF515_11990 PF07992 Pyridine nucleotide-disulphide oxidoreductase PF515_12005 PF00793 DAHP synthetase I family PF515_12010 PF02694 Uncharacterised BCR, YnfA/UPF0060 family PF515_12015 PF00004 ATPase family associated with various cellular activities (AAA) PF515_12015 PF07724 AAA domain (Cdc48 subfamily) PF515_12015 PF17871 AAA lid domain PF515_12015 PF02861 Clp amino terminal domain, pathogenicity island component PF515_12015 PF10431 C-terminal, D2-small domain, of ClpB protein PF515_12020 PF02617 ATP-dependent Clp protease adaptor protein ClpS PF515_12030 PF01118 Semialdehyde dehydrogenase, NAD binding domain PF515_12030 PF02774 Semialdehyde dehydrogenase, dimerisation domain PF515_12045 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) PF515_12050 PF00291 Pyridoxal-phosphate dependent enzyme PF515_12050 PF00585 C-terminal regulatory domain of Threonine dehydratase PF515_12055 PF02080 TrkA-C domain PF515_12055 PF02254 TrkA-N domain PF515_12060 PF02386 Cation transport protein PF515_12065 PF02253 Phospholipase A1 PF515_12070 PF08367 Peptidase M16C associated PF515_12070 PF05193 Peptidase M16 inactive domain PF515_12070 PF00675 Insulinase (Peptidase family M16) PF515_12075 PF07715 TonB-dependent Receptor Plug Domain PF515_12075 PF00593 TonB dependent receptor PF515_12080 PF00294 pfkB family carbohydrate kinase PF515_12090 PF07290 Protein of unknown function (DUF1449) PF515_12105 PF01654 Cytochrome bd terminal oxidase subunit I PF515_12110 PF02322 Cytochrome bd terminal oxidase subunit II PF515_12115 PF08173 Membrane bound YbgT-like protein PF515_12130 PF09829 Uncharacterized protein conserved in bacteria (DUF2057) PF515_12140 PF02881 SRP54-type protein, helical bundle domain PF515_12140 PF00448 SRP54-type protein, GTPase domain PF515_12165 PF00571 CBS domain PF515_12165 PF00478 IMP dehydrogenase / GMP reductase domain PF515_12170 PF00202 Aminotransferase class-III PF515_12175 PF00462 Glutaredoxin PF515_12185 PF03466 LysR substrate binding domain PF515_12185 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family PF515_12190 PF00557 Metallopeptidase family M24 PF515_12195 PF05525 Branched-chain amino acid transport protein PF515_12220 PF05524 PEP-utilising enzyme, N-terminal PF515_12220 PF00391 PEP-utilising enzyme, mobile domain PF515_12220 PF02896 PEP-utilising enzyme, TIM barrel domain PF515_12220 PF00381 PTS HPr component phosphorylation site PF515_12220 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 PF515_12225 PF00294 pfkB family carbohydrate kinase PF515_12230 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit PF515_12230 PF02378 Phosphotransferase system, EIIC PF515_12250 PF00990 Diguanylate cyclase, GGDEF domain PF515_12250 PF03707 Bacterial signalling protein N terminal repeat PF515_12250 PF00563 EAL domain PF515_12260 PF07995 Glucose / Sorbosone dehydrogenase PF515_12265 PF02586 SOS response associated peptidase (SRAP) PF515_12270 PF01740 STAS domain PF515_12270 PF00916 Sulfate permease family PF515_12275 PF00082 Subtilase family PF515_12275 PF05922 Peptidase inhibitor I9 PF515_12290 PF00324 Amino acid permease PF515_12295 PF00266 Aminotransferase class-V PF515_12300 PF01037 Lrp/AsnC ligand binding domain PF515_12325 PF13419 Haloacid dehalogenase-like hydrolase PF515_12330 PF01479 S4 domain PF515_12335 PF00154 recA bacterial DNA recombination protein PF515_12340 PF02631 RecX family PF515_12355 PF00132 Bacterial transferase hexapeptide (six repeats) PF515_12355 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 PF515_12360 PF07977 FabA-like domain PF515_12365 PF00132 Bacterial transferase hexapeptide (six repeats) PF515_12365 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD PF515_12375 PF01103 Surface antigen PF515_12375 PF07244 Surface antigen variable number repeat PF515_12380 PF13180 PDZ domain PF515_12380 PF17820 PDZ domain PF515_12380 PF02163 Peptidase family M50 PF515_12385 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain PF515_12385 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase PF515_12385 PF13288 DXP reductoisomerase C-terminal domain PF515_12395 PF01255 Putative undecaprenyl diphosphate synthase PF515_12400 PF01765 Ribosome recycling factor PF515_12405 PF00696 Amino acid kinase family PF515_12410 PF04055 Radical SAM superfamily PF515_12410 PF18693 TRAM domain PF515_12410 PF00919 Uncharacterized protein family UPF0004 PF515_12415 PF00512 His Kinase A (phospho-acceptor) domain PF515_12415 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PF515_12415 PF00989 PAS fold PF515_12420 PF00072 Response regulator receiver domain PF515_12420 PF00158 Sigma-54 interaction domain PF515_12420 PF02954 Bacterial regulatory protein, Fis family PF515_12425 PF00440 Bacterial regulatory proteins, tetR family PF515_12430 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain PF515_12430 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain PF515_12440 PF02542 YgbB family PF515_12450 PF01266 FAD dependent oxidoreductase PF515_12470 PF10415 Fumarase C C-terminus PF515_12470 PF00206 Lyase PF515_12475 PF16363 GDP-mannose 4,6 dehydratase PF515_12480 PF02635 DsrE/DsrF-like family PF515_12500 PF00892 EamA-like transporter family PF515_12505 PF00155 Aminotransferase class I and II PF515_12505 PF00392 Bacterial regulatory proteins, gntR family PF515_12510 PF01638 HxlR-like helix-turn-helix PF515_12515 PF00994 Probable molybdopterin binding domain PF515_12515 PF03454 MoeA C-terminal region (domain IV) PF515_12515 PF03453 MoeA N-terminal region (domain I and II) PF515_12520 PF00994 Probable molybdopterin binding domain PF515_12520 PF01967 MoaC family PF515_12525 PF02391 MoaE protein PF515_12535 PF06463 Molybdenum Cofactor Synthesis C PF515_12535 PF04055 Radical SAM superfamily PF515_12540 PF00384 Molybdopterin oxidoreductase PF515_12540 PF04879 Molybdopterin oxidoreductase Fe4S4 domain PF515_12540 PF01568 Molydopterin dinucleotide binding domain PF515_12545 PF12804 MobA-like NTP transferase domain PF515_12550 PF04324 BFD-like [2Fe-2S] binding domain PF515_12550 PF04879 Molybdopterin oxidoreductase Fe4S4 domain PF515_12550 PF00384 Molybdopterin oxidoreductase PF515_12550 PF01568 Molydopterin dinucleotide binding domain PF515_12555 PF18267 Rubredoxin NAD+ reductase C-terminal domain PF515_12555 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain PF515_12555 PF01077 Nitrite and sulphite reductase 4Fe-4S domain PF515_12555 PF07992 Pyridine nucleotide-disulphide oxidoreductase PF515_12555 PF04324 BFD-like [2Fe-2S] binding domain PF515_12560 PF07992 Pyridine nucleotide-disulphide oxidoreductase PF515_12560 PF04324 BFD-like [2Fe-2S] binding domain PF515_12560 PF01077 Nitrite and sulphite reductase 4Fe-4S domain PF515_12560 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain PF515_12560 PF13806 Rieske-like [2Fe-2S] domain PF515_12560 PF18267 Rubredoxin NAD+ reductase C-terminal domain PF515_12570 PF00072 Response regulator receiver domain PF515_12570 PF00486 Transcriptional regulatory protein, C terminal PF515_12575 PF00005 ABC transporter PF515_12585 PF11799 impB/mucB/samB family C-terminal domain PF515_12585 PF13438 Domain of unknown function (DUF4113) PF515_12585 PF00817 impB/mucB/samB family PF515_12590 PF01220 Dehydroquinase class II PF515_12595 PF00364 Biotin-requiring enzyme PF515_12600 PF02785 Biotin carboxylase C-terminal domain PF515_12600 PF00289 Biotin carboxylase, N-terminal domain PF515_12600 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain PF515_12610 PF12832 MFS_1 like family PF515_12690 PF03869 Arc-like DNA binding domain PF515_13015 PF01812 5-formyltetrahydrofolate cyclo-ligase family PF515_13020 PF00691 OmpA family PF515_13020 PF04355 SmpA / OmlA family PF515_13025 PF05662 Coiled stalk of trimeric autotransporter adhesin PF515_13025 PF13018 Extended Signal Peptide of Type V secretion system PF515_13025 PF05658 Head domain of trimeric autotransporter adhesin PF515_13025 PF03895 YadA-like membrane anchor domain PF515_13030 PF00004 ATPase family associated with various cellular activities (AAA) PF515_13030 PF05362 Lon protease (S16) C-terminal proteolytic domain PF515_13030 PF02190 ATP-dependent protease La (LON) substrate-binding domain PF515_13035 PF02590 Predicted SPOUT methyltransferase PF515_13040 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase PF515_13050 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase PF515_13050 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain PF515_13055 PF04060 Putative Fe-S cluster PF515_13060 PF10576 Iron-sulfur binding domain of endonuclease III PF515_13060 PF00633 Helix-hairpin-helix motif PF515_13060 PF00730 HhH-GPD superfamily base excision DNA repair protein PF515_13070 PF05191 Adenylate kinase, active site lid PF515_13085 PF00905 Penicillin binding protein transpeptidase domain PF515_13085 PF03717 Penicillin-binding Protein dimerisation domain PF515_13100 PF02492 CobW/HypB/UreG, nucleotide-binding domain PF515_13105 PF01730 UreF PF515_13110 PF05194 UreE urease accessory protein, C-terminal domain PF515_13110 PF02814 UreE urease accessory protein, N-terminal domain PF515_13115 PF01979 Amidohydrolase family PF515_13115 PF00449 Urease alpha-subunit, N-terminal domain PF515_13120 PF00699 Urease beta subunit PF515_13125 PF00547 Urease, gamma subunit PF515_13130 PF01774 UreD urease accessory protein PF515_13145 PF00463 Isocitrate lyase family PF515_13150 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family PF515_13150 PF03466 LysR substrate binding domain PF515_13155 PF00571 CBS domain PF515_13155 PF03471 Transporter associated domain PF515_13155 PF01595 Cyclin M transmembrane N-terminal domain PF515_13160 PF03600 Citrate transporter PF515_13175 PF00009 Elongation factor Tu GTP binding domain PF515_13180 PF01507 Phosphoadenosine phosphosulfate reductase family PF515_13195 PF14052 Capsule assembly protein Wzi PF515_13200 PF00152 tRNA synthetases class II (D, K and N) PF515_13200 PF01336 OB-fold nucleic acid binding domain PF515_13215 PF00301 Rubredoxin PF515_13220 PF18113 Rubredoxin binding C-terminal domain PF515_13220 PF07992 Pyridine nucleotide-disulphide oxidoreductase PF515_13225 PF00561 alpha/beta hydrolase fold PF515_13230 PF03466 LysR substrate binding domain PF515_13230 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family PF515_13240 PF13090 Polyphosphate kinase C-terminal domain 2 PF515_13240 PF13089 Polyphosphate kinase N-terminal domain PF515_13240 PF17941 Polyphosphate kinase C-terminal domain 1 PF515_13240 PF02503 Polyphosphate kinase middle domain PF515_13245 PF00912 Transglycosylase PF515_13250 PF01694 Rhomboid family PF515_13260 PF00005 ABC transporter PF515_13265 PF13472 GDSL-like Lipase/Acylhydrolase family PF515_13270 PF00484 Carbonic anhydrase PF515_13275 PF00561 alpha/beta hydrolase fold PF515_13285 PF00593 TonB dependent receptor PF515_13285 PF07715 TonB-dependent Receptor Plug Domain PF515_13290 PF01521 Iron-sulphur cluster biosynthesis PF515_13290 PF01106 NifU-like domain PF515_13300 PF00884 Sulfatase PF515_13305 PF03781 Sulfatase-modifying factor enzyme 1 PF515_13320 PF00291 Pyridoxal-phosphate dependent enzyme PF515_13325 PF01384 Phosphate transporter family PF515_13330 PF02310 B12 binding domain PF515_13330 PF02607 B12 binding domain PF515_13330 PF02965 Vitamin B12 dependent methionine synthase, activation domain PF515_13330 PF00809 Pterin binding enzyme PF515_13330 PF02574 Homocysteine S-methyltransferase PF515_13335 PF02779 Transketolase, pyrimidine binding domain PF515_13335 PF02780 Transketolase, C-terminal domain PF515_13340 PF00456 Transketolase, thiamine diphosphate binding domain PF515_13345 PF07690 Major Facilitator Superfamily PF515_13355 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family PF515_13355 PF03466 LysR substrate binding domain PF515_13365 PF01263 Aldose 1-epimerase PF515_13370 PF07690 Major Facilitator Superfamily PF515_13375 PF12833 Helix-turn-helix domain PF515_13375 PF02311 AraC-like ligand binding domain PF515_13380 PF04960 Glutaminase PF515_13385 PF01327 Polypeptide deformylase PF515_13390 PF07690 Major Facilitator Superfamily PF515_13400 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain PF515_13400 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain PF515_13400 PF00205 Thiamine pyrophosphate enzyme, central domain PF515_13405 PF00171 Aldehyde dehydrogenase family PF515_13410 PF01958 Domain of unknown function DUF108 PF515_13410 PF03447 Homoserine dehydrogenase, NAD binding domain PF515_13420 PF12697 Alpha/beta hydrolase family PF515_13430 PF07690 Major Facilitator Superfamily PF515_13435 PF07992 Pyridine nucleotide-disulphide oxidoreductase PF515_13435 PF14759 Reductase C-terminal PF515_13440 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily PF515_13450 PF00355 Rieske [2Fe-2S] domain PF515_13460 PF00355 Rieske [2Fe-2S] domain PF515_13465 PF01614 Bacterial transcriptional regulator PF515_13465 PF09339 IclR helix-turn-helix domain PF515_13480 PF00378 Enoyl-CoA hydratase/isomerase PF515_13490 PF00535 Glycosyl transferase family 2 PF515_13495 PF01522 Polysaccharide deacetylase PF515_13495 PF14883 Hypothetical glycosyl hydrolase family 13 PF515_13500 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase PF515_13505 PF07152 YaeQ protein PF515_13510 PF00375 Sodium:dicarboxylate symporter family PF515_13515 PF02492 CobW/HypB/UreG, nucleotide-binding domain PF515_13515 PF07683 Cobalamin synthesis protein cobW C-terminal domain PF515_13525 PF03061 Thioesterase superfamily PF515_13535 PF02028 BCCT, betaine/carnitine/choline family transporter PF515_13540 PF02028 BCCT, betaine/carnitine/choline family transporter PF515_13545 PF13977 BetI-type transcriptional repressor, C-terminal PF515_13545 PF00440 Bacterial regulatory proteins, tetR family PF515_13550 PF00171 Aldehyde dehydrogenase family PF515_13555 PF05199 GMC oxidoreductase PF515_13555 PF00732 GMC oxidoreductase PF515_13560 PF06039 Malate:quinone oxidoreductase (Mqo) PF515_13570 PF02574 Homocysteine S-methyltransferase PF515_13575 PF13520 Amino acid permease PF515_13600 PF01126 Heme oxygenase PF515_13610 PF04575 Protein of unknown function (DUF560) PF515_13620 PF00593 TonB dependent receptor PF515_13620 PF07715 TonB-dependent Receptor Plug Domain PF515_13630 PF04542 Sigma-70 region 2 PF515_13630 PF08281 Sigma-70, region 4 PF515_13640 PF00701 Dihydrodipicolinate synthetase family PF515_13645 PF00083 Sugar (and other) transporter PF515_13665 PF01026 TatD related DNase PF515_13680 PF07693 KAP family P-loop domain PF515_13700 PF00436 Single-strand binding protein family PF515_13755 PF13356 Arm DNA-binding domain PF515_13755 PF00589 Phage integrase family PF515_13855 PF00712 DNA polymerase III beta subunit, N-terminal domain PF515_13855 PF02767 DNA polymerase III beta subunit, central domain PF515_13855 PF02768 DNA polymerase III beta subunit, C-terminal domain PF515_13895 PF05016 ParE toxin of type II toxin-antitoxin system, parDE PF515_14110 PF01695 IstB-like ATP binding protein PF515_14120 PF00145 C-5 cytosine-specific DNA methylase PF515_14200 PF00929 Exonuclease PF515_14275 PF07690 Major Facilitator Superfamily PF515_14280 PF13533 Biotin-lipoyl like PF515_14285 PF03061 Thioesterase superfamily PF515_14290 PF00490 Delta-aminolevulinic acid dehydratase PF515_14295 PF01266 FAD dependent oxidoreductase PF515_14300 PF08338 Domain of unknown function (DUF1731) PF515_14300 PF01370 NAD dependent epimerase/dehydratase family PF515_14320 PF00149 Calcineurin-like phosphoesterase PF515_14320 PF12320 Type 5 capsule protein repressor C-terminal domain PF515_14330 PF01168 Alanine racemase, N-terminal domain PF515_14335 PF00437 Type II/IV secretion system protein PF515_14340 PF00437 Type II/IV secretion system protein PF515_14345 PF01475 Ferric uptake regulator family PF515_14350 PF04355 SmpA / OmlA family PF515_14355 PF03658 RnfH family Ubiquitin PF515_14365 PF01814 Hemerythrin HHE cation binding domain PF515_14370 PF13230 Glutamine amidotransferases class-II PF515_14380 PF00696 Amino acid kinase family PF515_14385 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II PF515_14385 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III PF515_14385 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain PF515_14385 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I PF515_14390 PF00692 dUTPase PF515_14395 PF00580 UvrD/REP helicase N-terminal domain PF515_14395 PF13361 UvrD-like helicase C-terminal domain PF515_14400 PF13488 Glycine zipper PF515_14400 PF00691 OmpA family PF515_14405 PF01553 Acyltransferase PF515_14415 PF03775 Septum formation inhibitor MinC, C-terminal domain PF515_14420 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain PF515_14425 PF03776 Septum formation topological specificity factor MinE PF515_14445 PF01810 LysE type translocator PF515_14450 PF01580 FtsK/SpoIIIE family PF515_14450 PF09397 Ftsk gamma domain PF515_14450 PF13491 4TM region of DNA translocase FtsK/SpoIIIE PF515_14450 PF17854 FtsK alpha domain PF515_14455 PF07992 Pyridine nucleotide-disulphide oxidoreductase PF515_14460 PF03588 Leucyl/phenylalanyl-tRNA protein transferase PF515_14465 PF04377 Arginine-tRNA-protein transferase, C terminus PF515_14465 PF04376 Arginine-tRNA-protein transferase, N terminus PF515_14470 PF00583 Acetyltransferase (GNAT) family PF515_14485 PF00009 Elongation factor Tu GTP binding domain PF515_14485 PF03144 Elongation factor Tu domain 2 PF515_14485 PF03143 Elongation factor Tu C-terminal domain PF515_14490 PF14492 Elongation Factor G, domain II PF515_14490 PF03764 Elongation factor G, domain IV PF515_14490 PF00009 Elongation factor Tu GTP binding domain PF515_14490 PF03144 Elongation factor Tu domain 2 PF515_14490 PF00679 Elongation factor G C-terminus PF515_14495 PF00177 Ribosomal protein S7p/S5e PF515_14500 PF00164 Ribosomal protein S12/S23 PF515_14510 PF00109 Beta-ketoacyl synthase, N-terminal domain PF515_14510 PF02801 Beta-ketoacyl synthase, C-terminal domain PF515_14515 PF03653 Uncharacterised protein family (UPF0093) PF515_14520 PF05726 Pirin C-terminal cupin domain PF515_14520 PF02678 Pirin PF515_14530 PF02540 NAD synthase PF515_14530 PF00795 Carbon-nitrogen hydrolase PF515_14545 PF00111 2Fe-2S iron-sulfur cluster binding domain PF515_14545 PF00175 Oxidoreductase NAD-binding domain PF515_14545 PF00970 Oxidoreductase FAD-binding domain PF515_14550 PF00171 Aldehyde dehydrogenase family PF515_14555 PF00355 Rieske [2Fe-2S] domain PF515_14555 PF00848 Ring hydroxylating alpha subunit (catalytic domain) PF515_14560 PF07859 alpha/beta hydrolase fold PF515_14565 PF02028 BCCT, betaine/carnitine/choline family transporter PF515_14570 PF00180 Isocitrate/isopropylmalate dehydrogenase PF515_14575 PF03466 LysR substrate binding domain PF515_14575 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family PF515_14595 PF00037 4Fe-4S binding domain PF515_14600 PF01467 Cytidylyltransferase-like PF515_14605 PF01668 SmpB protein PF515_14610 PF03358 NADPH-dependent FMN reductase PF515_14615 PF02578 Multi-copper polyphenol oxidoreductase laccase PF515_14620 PF00849 RNA pseudouridylate synthase PF515_14620 PF01479 S4 domain PF515_14625 PF13525 Outer membrane lipoprotein PF515_14630 PF08278 DNA primase DnaG DnaB-binding PF515_14630 PF10410 DnaB-helicase binding domain of primase PF515_14630 PF08275 DNA primase catalytic core, N-terminal domain PF515_14630 PF01807 CHC2 zinc finger PF515_14635 PF01488 Shikimate / quinate 5-dehydrogenase PF515_14635 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain PF515_14635 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain PF515_14645 PF03550 Outer membrane lipoprotein LolB PF515_14650 PF08544 GHMP kinases C terminal PF515_14650 PF00288 GHMP kinases N terminal domain PF515_14675 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase PF515_14675 PF14572 Phosphoribosyl synthetase-associated domain PF515_14680 PF01386 Ribosomal L25p family PF515_14685 PF01195 Peptidyl-tRNA hydrolase PF515_14690 PF02261 Aspartate decarboxylase PF515_14705 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase PF515_14715 PF08543 Phosphomethylpyrimidine kinase PF515_14715 PF02581 Thiamine monophosphate synthase PF515_14715 PF03070 TENA/THI-4/PQQC family PF515_14720 PF04972 BON domain PF515_14720 PF01476 LysM domain PF515_14725 PF00550 Phosphopantetheine attachment site PF515_14735 PF00698 Acyl transferase domain PF515_14740 PF01783 Ribosomal L32p protein family PF515_14745 PF02620 Large ribosomal RNA subunit accumulation protein YceD PF515_14750 PF04315 Elongation factor P hydroxylase PF515_14755 PF01300 Telomere recombination PF515_14760 PF02616 Segregation and condensation protein ScpA PF515_14765 PF04079 Segregation and condensation complex subunit ScpB PF515_14770 PF01479 S4 domain PF515_14770 PF00849 RNA pseudouridylate synthase PF515_14785 PF00155 Aminotransferase class I and II PF515_14790 PF04055 Radical SAM superfamily PF515_14790 PF06968 Biotin and Thiamin Synthesis associated domain PF515_14790 PF00202 Aminotransferase class-III PF515_14795 PF12697 Alpha/beta hydrolase family PF515_14795 PF08241 Methyltransferase domain PF515_14800 PF02358 Trehalose-phosphatase PF515_14805 PF00982 Glycosyltransferase family 20 PF515_14810 PF07690 Major Facilitator Superfamily PF515_14815 PF00210 Ferritin-like domain PF515_14820 PF00533 BRCA1 C Terminus (BRCT) domain PF515_14820 PF01653 NAD-dependent DNA ligase adenylation domain PF515_14820 PF03120 NAD-dependent DNA ligase OB-fold domain PF515_14820 PF03119 NAD-dependent DNA ligase C4 zinc finger domain PF515_14820 PF12826 Helix-hairpin-helix motif PF515_14830 PF02463 RecF/RecN/SMC N terminal domain PF515_14830 PF06470 SMC proteins Flexible Hinge Domain PF515_14840 PF01925 Sulfite exporter TauE/SafE PF515_14850 PF03309 Type III pantothenate kinase PF515_14855 PF02978 Signal peptide binding domain PF515_14855 PF02881 SRP54-type protein, helical bundle domain PF515_14855 PF00448 SRP54-type protein, GTPase domain PF515_14865 PF01207 Dihydrouridine synthase (Dus) PF515_14895 PF00692 dUTPase PF515_14910 PF01048 Phosphorylase superfamily PF515_14915 PF10609 NUBPL iron-transfer P-loop NTPase PF515_14925 PF09334 tRNA synthetases class I (M) PF515_14925 PF01588 Putative tRNA binding domain PF515_14950 PF13533 Biotin-lipoyl like PF515_14955 PF00291 Pyridoxal-phosphate dependent enzyme PF515_14970 PF05552 Conserved TM helix PF515_14985 PF00970 Oxidoreductase FAD-binding domain PF515_14985 PF00175 Oxidoreductase NAD-binding domain PF515_14990 PF03466 LysR substrate binding domain PF515_14990 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family PF515_14995 PF00313 'Cold-shock' DNA-binding domain PF515_15005 PF00361 Proton-conducting membrane transporter PF515_15010 PF00361 Proton-conducting membrane transporter PF515_15015 PF00361 Proton-conducting membrane transporter PF515_15015 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus PF515_15020 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L PF515_15025 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 PF515_15030 PF12838 4Fe-4S dicluster domain PF515_15035 PF00146 NADH dehydrogenase PF515_15040 PF00384 Molybdopterin oxidoreductase PF515_15040 PF04879 Molybdopterin oxidoreductase Fe4S4 domain PF515_15040 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region PF515_15045 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit PF515_15045 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region PF515_15045 PF10531 SLBB domain PF515_15055 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit PF515_15055 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit PF515_15060 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit PF515_15065 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 PF515_15070 PF17151 Periplasmic sensor domain PF515_15070 PF00990 Diguanylate cyclase, GGDEF domain PF515_15080 PF00672 HAMP domain PF515_15080 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PF515_15080 PF00512 His Kinase A (phospho-acceptor) domain PF515_15085 PF00072 Response regulator receiver domain PF515_15085 PF00486 Transcriptional regulatory protein, C terminal PF515_15095 PF02867 Ribonucleotide reductase, barrel domain PF515_15095 PF00317 Ribonucleotide reductase, all-alpha domain PF515_15095 PF03477 ATP cone domain PF515_15105 PF00268 Ribonucleotide reductase, small chain PF515_15115 PF13756 Stimulus-sensing domain PF515_15115 PF00672 HAMP domain PF515_15115 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PF515_15115 PF00512 His Kinase A (phospho-acceptor) domain PF515_15115 PF13755 Sensor N-terminal transmembrane domain PF515_15185 PF01011 PQQ enzyme repeat PF515_15185 PF13360 PQQ-like domain PF515_15210 PF02567 Phenazine biosynthesis-like protein PF515_15235 PF01613 Flavin reductase like domain PF515_15240 PF01717 Cobalamin-independent synthase, Catalytic domain PF515_15240 PF08267 Cobalamin-independent synthase, N-terminal domain PF515_15250 PF03466 LysR substrate binding domain PF515_15250 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family PF515_15255 PF01810 LysE type translocator PF515_15265 PF12833 Helix-turn-helix domain PF515_15265 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term PF515_15270 PF01546 Peptidase family M20/M25/M40 PF515_15270 PF07687 Peptidase dimerisation domain PF515_15290 PF03466 LysR substrate binding domain PF515_15290 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family PF515_15295 PF07690 Major Facilitator Superfamily PF515_15305 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family PF515_15305 PF03466 LysR substrate binding domain PF515_15310 PF14537 Cytochrome c3 PF515_15310 PF00890 FAD binding domain PF515_15320 PF02515 CoA-transferase family III PF515_15325 PF07690 Major Facilitator Superfamily PF515_15330 PF02771 Acyl-CoA dehydrogenase, N-terminal domain PF515_15330 PF02770 Acyl-CoA dehydrogenase, middle domain PF515_15330 PF00441 Acyl-CoA dehydrogenase, C-terminal domain PF515_15335 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family PF515_15335 PF03466 LysR substrate binding domain PF515_15340 PF00107 Zinc-binding dehydrogenase PF515_15340 PF08240 Alcohol dehydrogenase GroES-like domain PF515_15345 PF00962 Adenosine/AMP deaminase PF515_15370 PF02445 Quinolinate synthetase A protein PF515_15375 PF01960 ArgJ family PF515_15380 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain PF515_15380 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain PF515_15385 PF00893 Small Multidrug Resistance protein PF515_15395 PF05275 Copper resistance protein B precursor (CopB) PF515_15400 PF00394 Multicopper oxidase PF515_15400 PF07731 Multicopper oxidase PF515_15400 PF07732 Multicopper oxidase PF515_15415 PF00834 Ribulose-phosphate 3 epimerase family PF515_15425 PF00756 Putative esterase PF515_15435 PF04445 Putative SAM-dependent methyltransferase PF515_15440 PF00814 Glycoprotease family PF515_15445 PF00132 Bacterial transferase hexapeptide (six repeats) PF515_15450 PF00293 NUDIX domain PF515_15490 PF00425 chorismate binding enzyme PF515_15490 PF04715 Anthranilate synthase component I, N terminal region PF515_15495 PF00155 Aminotransferase class I and II PF515_15500 PF00815 Histidinol dehydrogenase PF515_15505 PF01634 ATP phosphoribosyltransferase PF515_15510 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) PF515_15515 PF01722 BolA-like protein PF515_15520 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein PF515_15525 PF04552 Sigma-54, DNA binding domain PF515_15525 PF00309 Sigma-54 factor, Activator interacting domain (AID) PF515_15525 PF04963 Sigma-54 factor, core binding domain PF515_15570 PF00795 Carbon-nitrogen hydrolase PF515_15580 PF01047 MarR family PF515_15585 PF02566 OsmC-like protein PF515_15590 PF00437 Type II/IV secretion system protein PF515_15620 PF01612 3'-5' exonuclease PF515_15620 PF01367 5'-3' exonuclease, C-terminal SAM fold PF515_15620 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain PF515_15620 PF00476 DNA polymerase family A PF515_15625 PF02325 YGGT family PF515_15630 PF03807 NADP oxidoreductase coenzyme F420-dependent PF515_15630 PF14748 Pyrroline-5-carboxylate reductase dimerisation PF515_15635 PF11734 TilS substrate C-terminal domain PF515_15635 PF09179 TilS substrate binding domain PF515_15635 PF01171 PP-loop family PF515_15640 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit PF515_15645 PF02541 Ppx/GppA phosphatase family PF515_15650 PF00085 Thioredoxin PF515_15655 PF07497 Rho termination factor, RNA-binding domain PF515_15655 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain PF515_15655 PF07498 Rho termination factor, N-terminal domain PF515_15670 PF00216 Bacterial DNA-binding protein PF515_15675 PF03147 Ferredoxin-fold anticodon binding domain PF515_15675 PF03483 B3/4 domain PF515_15675 PF01588 Putative tRNA binding domain PF515_15675 PF03484 tRNA synthetase B5 domain PF515_15675 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain PF515_15680 PF01409 tRNA synthetases class II core domain (F) PF515_15680 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain PF515_15700 PF00453 Ribosomal protein L20 PF515_15705 PF01632 Ribosomal protein L35 PF515_15715 PF07690 Major Facilitator Superfamily PF515_15720 PF09335 SNARE associated Golgi protein PF515_15725 PF00043 Glutathione S-transferase, C-terminal domain PF515_15725 PF02798 Glutathione S-transferase, N-terminal domain PF515_15730 PF00707 Translation initiation factor IF-3, C-terminal domain PF515_15730 PF05198 Translation initiation factor IF-3, N-terminal domain PF515_15735 PF03129 Anticodon binding domain PF515_15735 PF02824 TGS domain PF515_15735 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) PF515_15735 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain PF515_15740 PF13193 AMP-binding enzyme C-terminal domain PF515_15740 PF00501 AMP-binding enzyme PF515_15745 PF04751 Protein of unknown function (DUF615) PF515_15750 PF00381 PTS HPr component phosphorylation site PF515_15755 PF03668 P-loop ATPase protein family PF515_15760 PF02569 Pantoate-beta-alanine ligase PF515_15765 PF02548 Ketopantoate hydroxymethyltransferase PF515_15770 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) PF515_15775 PF12627 Probable RNA and SrmB- binding site of polymerase A PF515_15775 PF12626 Polymerase A arginine-rich C-terminus PF515_15775 PF01743 Poly A polymerase head domain PF515_15785 PF03819 MazG nucleotide pyrophosphohydrolase domain PF515_15795 PF13291 ACT domain PF515_15795 PF04607 Region found in RelA / SpoT proteins PF515_15795 PF02824 TGS domain PF515_15800 PF05958 tRNA (Uracil-5-)-methyltransferase PF515_15810 PF00291 Pyridoxal-phosphate dependent enzyme PF515_15815 PF00672 HAMP domain PF515_15815 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PF515_15815 PF00512 His Kinase A (phospho-acceptor) domain PF515_15815 PF00072 Response regulator receiver domain PF515_15815 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) PF515_15815 PF01627 Hpt domain PF515_15820 PF00378 Enoyl-CoA hydratase/isomerase PF515_15825 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase PF515_15825 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase PF515_15830 PF01261 Xylose isomerase-like TIM barrel PF515_15840 PF00106 short chain dehydrogenase PF515_15845 PF02233 NAD(P) transhydrogenase beta subunit PF515_15850 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch PF515_15855 PF01262 Alanine dehydrogenase/PNT, C-terminal domain PF515_15855 PF05222 Alanine dehydrogenase/PNT, N-terminal domain PF515_15860 PF00892 EamA-like transporter family PF515_15870 PF07690 Major Facilitator Superfamily PF515_15875 PF01207 Dihydrouridine synthase (Dus) PF515_15885 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family PF515_15885 PF03466 LysR substrate binding domain PF515_15895 PF00899 ThiF family PF515_15905 PF00330 Aconitase family (aconitate hydratase) PF515_15905 PF00694 Aconitase C-terminal domain PF515_15910 PF01026 TatD related DNase PF515_15925 PF00009 Elongation factor Tu GTP binding domain PF515_15925 PF03144 Elongation factor Tu domain 2 PF515_15925 PF16658 Class II release factor RF3, C-terminal domain PF515_15945 PF00563 EAL domain PF515_15945 PF03707 Bacterial signalling protein N terminal repeat PF515_15945 PF00990 Diguanylate cyclase, GGDEF domain PF515_15950 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain PF515_15950 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain PF515_15955 PF10369 Small subunit of acetolactate synthase PF515_15960 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain PF515_15960 PF00205 Thiamine pyrophosphate enzyme, central domain PF515_15960 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain PF515_15970 PF08264 Anticodon-binding domain of tRNA PF515_15970 PF00133 tRNA synthetases class I (I, L, M and V) PF515_15970 PF13603 Leucyl-tRNA synthetase, Domain 2 PF515_15970 PF09334 tRNA synthetases class I (M) PF515_15985 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion PF515_15990 PF00005 ABC transporter PF515_15990 PF02687 FtsX-like permease family PF515_15990 PF12704 MacB-like periplasmic core domain PF515_15995 PF02321 Outer membrane efflux protein PF515_16010 PF00929 Exonuclease PF515_16015 PF03193 RsgA GTPase PF515_16025 PF00462 Glutaredoxin PF515_16030 PF02556 Preprotein translocase subunit SecB PF515_16045 PF00109 Beta-ketoacyl synthase, N-terminal domain PF515_16045 PF02801 Beta-ketoacyl synthase, C-terminal domain PF515_16060 PF00109 Beta-ketoacyl synthase, N-terminal domain PF515_16060 PF02801 Beta-ketoacyl synthase, C-terminal domain PF515_16070 PF04820 Tryptophan halogenase PF515_16090 PF00221 Aromatic amino acid lyase PF515_16105 PF00501 AMP-binding enzyme PF515_16105 PF13193 AMP-binding enzyme C-terminal domain PF515_16115 PF00550 Phosphopantetheine attachment site PF515_16120 PF00550 Phosphopantetheine attachment site PF515_16135 PF01926 50S ribosome-binding GTPase PF515_16135 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal PF515_16140 PF13360 PQQ-like domain PF515_16150 PF03129 Anticodon binding domain PF515_16150 PF13393 Histidyl-tRNA synthetase PF515_16155 PF04551 GcpE protein PF515_16160 PF13464 Domain of unknown function (DUF4115) PF515_16170 PF04055 Radical SAM superfamily PF515_16175 PF00334 Nucleoside diphosphate kinase PF515_16180 PF04384 Iron-sulphur cluster assembly PF515_16185 PF01569 PAP2 superfamily PF515_16190 PF13439 Glycosyltransferase Family 4 PF515_16190 PF00534 Glycosyl transferases group 1 PF515_16195 PF11818 C-terminal domain of tail specific protease (DUF3340) PF515_16195 PF17804 Tail specific protease N-terminal domain PF515_16195 PF00595 PDZ domain PF515_16195 PF03572 Peptidase family S41 PF515_16200 PF00933 Glycosyl hydrolase family 3 N terminal domain PF515_16210 PF00561 alpha/beta hydrolase fold PF515_16215 PF00171 Aldehyde dehydrogenase family PF515_16220 PF00171 Aldehyde dehydrogenase family PF515_16225 PF01202 Shikimate kinase PF515_16230 PF02447 GntP family permease PF515_16235 PF01081 KDPG and KHG aldolase PF515_16240 PF00920 Dehydratase family PF515_16250 PF00871 Acetokinase family PF515_16255 PF07085 DRTGG domain PF515_16255 PF01515 Phosphate acetyl/butaryl transferase PF515_16260 PF05683 Fumarase C-terminus PF515_16260 PF05681 Fumarate hydratase (Fumerase) PF515_16275 PF07724 AAA domain (Cdc48 subfamily) PF515_16275 PF06689 ClpX C4-type zinc finger PF515_16275 PF10431 C-terminal, D2-small domain, of ClpB protein PF515_16280 PF00574 Clp protease PF515_16285 PF05698 Bacterial trigger factor protein (TF) C-terminus PF515_16285 PF05697 Bacterial trigger factor protein (TF) PF515_16285 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase PF515_16290 PF07715 TonB-dependent Receptor Plug Domain PF515_16290 PF00593 TonB dependent receptor PF515_16295 PF13640 2OG-Fe(II) oxygenase superfamily PF515_16295 PF18331 PKHD-type hydroxylase C-terminal domain PF515_16300 PF00682 HMGL-like PF515_16300 PF08502 LeuA allosteric (dimerisation) domain PF515_16305 PF00561 alpha/beta hydrolase fold PF515_16310 PF00561 alpha/beta hydrolase fold PF515_16310 PF07021 Methionine biosynthesis protein MetW PF515_16320 PF01725 Ham1 family PF515_16330 PF02416 mttA/Hcf106 family PF515_16335 PF02416 mttA/Hcf106 family PF515_16340 PF00902 Sec-independent protein translocase protein (TatC) PF515_16360 PF01790 Prolipoprotein diacylglyceryl transferase PF515_16375 PF00303 Thymidylate synthase PF515_16380 PF00186 Dihydrofolate reductase PF515_16390 PF01625 Peptide methionine sulfoxide reductase PF515_16400 PF01618 MotA/TolQ/ExbB proton channel family PF515_16410 PF01842 ACT domain PF515_16410 PF00551 Formyl transferase PF515_16420 PF00171 Aldehyde dehydrogenase family PF515_16425 PF00830 Ribosomal L28 family PF515_16430 PF00471 Ribosomal protein L33 PF515_16435 PF00999 Sodium/hydrogen exchanger family PF515_16435 PF02254 TrkA-N domain PF515_16455 PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) PF515_16460 PF00580 UvrD/REP helicase N-terminal domain PF515_16460 PF13361 UvrD-like helicase C-terminal domain PF515_16475 PF01396 Topoisomerase DNA binding C4 zinc finger PF515_16475 PF08272 Topoisomerase I zinc-ribbon-like PF515_16475 PF01131 DNA topoisomerase PF515_16475 PF01751 Toprim domain PF515_16485 PF01638 HxlR-like helix-turn-helix PF515_16490 PF08240 Alcohol dehydrogenase GroES-like domain PF515_16490 PF00107 Zinc-binding dehydrogenase PF515_16495 PF04102 SlyX PF515_16500 PF12848 ABC transporter PF515_16500 PF00005 ABC transporter PF515_16500 PF16326 ABC transporter C-terminal domain PF515_16505 PF01810 LysE type translocator PF515_16510 PF03279 Bacterial lipid A biosynthesis acyltransferase PF515_16520 PF00375 Sodium:dicarboxylate symporter family PF515_16530 PF01118 Semialdehyde dehydrogenase, NAD binding domain PF515_16530 PF02774 Semialdehyde dehydrogenase, dimerisation domain PF515_16550 PF01416 tRNA pseudouridine synthase PF515_16560 PF01176 Translation initiation factor 1A / IF-1 PF515_16575 PF00180 Isocitrate/isopropylmalate dehydrogenase PF515_16585 PF00694 Aconitase C-terminal domain PF515_16590 PF00330 Aconitase family (aconitate hydratase) PF515_16600 PF03466 LysR substrate binding domain PF515_16600 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family PF515_16620 PF00293 NUDIX domain PF515_16625 PF01590 GAF domain PF515_16625 PF05524 PEP-utilising enzyme, N-terminal PF515_16625 PF00391 PEP-utilising enzyme, mobile domain PF515_16625 PF02896 PEP-utilising enzyme, TIM barrel domain PF515_16630 PF00141 Peroxidase PF515_16635 PF12706 Beta-lactamase superfamily domain PF515_16640 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family PF515_16640 PF03466 LysR substrate binding domain PF515_16650 PF02798 Glutathione S-transferase, N-terminal domain PF515_16655 PF13280 WYL domain PF515_16655 PF08279 HTH domain PF515_16660 PF13419 Haloacid dehalogenase-like hydrolase PF515_16665 PF00849 RNA pseudouridylate synthase PF515_16665 PF01479 S4 domain PF515_16670 PF12111 Polyribonucleotide phosphorylase C terminal PF515_16670 PF10150 Ribonuclease E/G family PF515_16670 PF00575 S1 RNA binding domain PF515_16675 PF00501 AMP-binding enzyme PF515_16675 PF13193 AMP-binding enzyme C-terminal domain PF515_16690 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family PF515_16690 PF03466 LysR substrate binding domain PF515_16695 PF00106 short chain dehydrogenase PF515_16700 PF06969 HemN C-terminal domain PF515_16700 PF04055 Radical SAM superfamily PF515_16710 PF01554 MatE PF515_16715 PF02771 Acyl-CoA dehydrogenase, N-terminal domain PF515_16715 PF08028 Acyl-CoA dehydrogenase, C-terminal domain PF515_16715 PF02770 Acyl-CoA dehydrogenase, middle domain PF515_16720 PF02771 Acyl-CoA dehydrogenase, N-terminal domain PF515_16720 PF08028 Acyl-CoA dehydrogenase, C-terminal domain PF515_16725 PF03109 ABC1 family PF515_16730 PF01197 Ribosomal protein L31 PF515_16745 PF02537 CrcB-like protein, Camphor Resistance (CrcB) PF515_16765 PF03884 DNA gyrase inhibitor YacG PF515_16770 PF00753 Metallo-beta-lactamase superfamily PF515_16775 PF00762 Ferrochelatase PF515_16785 PF01177 Asp/Glu/Hydantoin racemase PF515_16800 PF01206 Sulfurtransferase TusA PF515_16805 PF03471 Transporter associated domain PF515_16805 PF00571 CBS domain PF515_16810 PF00795 Carbon-nitrogen hydrolase PF515_16815 PF01588 Putative tRNA binding domain PF515_16825 PF08334 Type II secretion system (T2SS), protein G PF515_16825 PF07963 Prokaryotic N-terminal methylation motif PF515_16830 PF00482 Type II secretion system (T2SS), protein F PF515_16835 PF00271 Helicase conserved C-terminal domain PF515_16835 PF18074 Primosomal protein N C-terminal domain PF515_16835 PF17764 3′ DNA-binding domain (3′BD) PF515_16835 PF00270 DEAD/DEAH box helicase PF515_16835 PF18319 PriA DNA helicase Cys-rich region (CRR) domain PF515_16840 PF00999 Sodium/hydrogen exchanger family PF515_16840 PF02254 TrkA-N domain PF515_16845 PF01430 Hsp33 protein PF515_16855 PF00226 DnaJ domain PF515_16855 PF01556 DnaJ C terminal domain PF515_16865 PF01544 CorA-like Mg2+ transporter protein PF515_16870 PF00013 KH domain PF515_16870 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain PF515_16870 PF03725 3' exoribonuclease family, domain 2 PF515_16870 PF00575 S1 RNA binding domain PF515_16870 PF01138 3' exoribonuclease family, domain 1 PF515_16875 PF00312 Ribosomal protein S15 PF515_16880 PF00144 Beta-lactamase PF515_16885 PF13538 UvrD-like helicase C-terminal domain PF515_16890 PF00580 UvrD/REP helicase N-terminal domain PF515_16890 PF12705 PD-(D/E)XK nuclease superfamily PF515_16890 PF13361 UvrD-like helicase C-terminal domain PF515_16895 PF17946 RecC C-terminal domain PF515_16905 PF03976 Polyphosphate kinase 2 (PPK2) PF515_16915 PF01209 ubiE/COQ5 methyltransferase family PF515_16925 PF03109 ABC1 family PF515_16930 PF01494 FAD binding domain PF515_16935 PF01502 Phosphoribosyl-AMP cyclohydrolase PF515_16950 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus PF515_16950 PF00361 Proton-conducting membrane transporter PF515_16950 PF04039 Domain related to MnhB subunit of Na+/H+ antiporter PF515_16950 PF13244 Domain of unknown function (DUF4040) PF515_16955 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L PF515_16960 PF00361 Proton-conducting membrane transporter PF515_16965 PF01899 Na+/H+ ion antiporter subunit PF515_16970 PF04066 Multiple resistance and pH regulation protein F (MrpF / PhaF) PF515_16975 PF03334 Na+/H+ antiporter subunit PF515_16980 PF02033 Ribosome-binding factor A PF515_16985 PF00009 Elongation factor Tu GTP binding domain PF515_16985 PF08364 Bacterial translation initiation factor IF-2 associated region PF515_16985 PF11987 Translation-initiation factor 2 PF515_16985 PF04760 Translation initiation factor IF-2, N-terminal region PF515_16990 PF13184 NusA-like KH domain PF515_16990 PF08529 NusA N-terminal domain PF515_16990 PF00575 S1 RNA binding domain PF515_16995 PF02576 RimP N-terminal domain PF515_16995 PF17384 RimP C-terminal SH3 domain PF515_17015 PF03840 Preprotein translocase SecG subunit PF515_17020 PF00121 Triosephosphate isomerase PF515_17025 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain PF515_17025 PF00437 Type II/IV secretion system protein PF515_17030 PF00482 Type II secretion system (T2SS), protein F PF515_17035 PF06750 Bacterial Peptidase A24 N-terminal domain PF515_17035 PF01478 Type IV leader peptidase family PF515_17040 PF01121 Dephospho-CoA kinase PF515_17050 PF08032 RNA 2'-O ribose methyltransferase substrate binding PF515_17050 PF00588 SpoU rRNA Methylase family PF515_17055 PF06865 Pyrimidine/purine nucleoside phosphorylase PF515_17065 PF02463 RecF/RecN/SMC N terminal domain PF515_17070 PF02622 Uncharacterized ACR, COG1678 PF515_17075 PF03652 Holliday junction resolvase PF515_17080 PF13533 Biotin-lipoyl like PF515_17105 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain PF515_17105 PF02805 Metal binding domain of Ada PF515_17105 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain PF515_17105 PF12833 Helix-turn-helix domain PF515_17110 PF01066 CDP-alcohol phosphatidyltransferase PF515_17120 PF01541 GIY-YIG catalytic domain PF515_17120 PF02151 UvrB/uvrC motif PF515_17120 PF08459 UvrC Helix-hairpin-helix N-terminal PF515_17140 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain PF515_17140 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain PF515_17140 PF00378 Enoyl-CoA hydratase/isomerase PF515_17145 PF02803 Thiolase, C-terminal domain PF515_17145 PF00108 Thiolase, N-terminal domain PF515_17165 PF00376 MerR family regulatory protein PF515_17165 PF09278 MerR, DNA binding PF515_17175 PF01323 DSBA-like thioredoxin domain PF515_17190 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PF515_17190 PF00183 Hsp90 protein PF515_17205 PF03553 Na+/H+ antiporter family PF515_17205 PF13726 Na+-H+ antiporter family PF515_17210 PF00561 alpha/beta hydrolase fold PF515_17230 PF04997 RNA polymerase Rpb1, domain 1 PF515_17230 PF00623 RNA polymerase Rpb1, domain 2 PF515_17230 PF04983 RNA polymerase Rpb1, domain 3 PF515_17230 PF05000 RNA polymerase Rpb1, domain 4 PF515_17230 PF04998 RNA polymerase Rpb1, domain 5 PF515_17235 PF04563 RNA polymerase beta subunit PF515_17235 PF04561 RNA polymerase Rpb2, domain 2 PF515_17235 PF04565 RNA polymerase Rpb2, domain 3 PF515_17235 PF10385 RNA polymerase beta subunit external 1 domain PF515_17235 PF00562 RNA polymerase Rpb2, domain 6 PF515_17235 PF04560 RNA polymerase Rpb2, domain 7 PF515_17240 PF00542 Ribosomal protein L7/L12 C-terminal domain PF515_17240 PF16320 Ribosomal protein L7/L12 dimerisation domain PF515_17245 PF00466 Ribosomal protein L10 PF515_17250 PF00687 Ribosomal protein L1p/L10e family PF515_17255 PF00298 Ribosomal protein L11, RNA binding domain PF515_17255 PF03946 Ribosomal protein L11, N-terminal domain PF515_17260 PF00467 KOW motif PF515_17260 PF02357 Transcription termination factor nusG PF515_17265 PF00584 SecE/Sec61-gamma subunits of protein translocation complex PF515_17275 PF03144 Elongation factor Tu domain 2 PF515_17275 PF03143 Elongation factor Tu C-terminal domain PF515_17275 PF00009 Elongation factor Tu GTP binding domain PF515_17300 PF04715 Anthranilate synthase component I, N terminal region PF515_17300 PF00425 chorismate binding enzyme PF515_17305 PF13419 Haloacid dehalogenase-like hydrolase PF515_17310 PF12401 Protein of unknown function (DUF2662) PF515_17310 PF00498 FHA domain PF515_17315 PF03958 Bacterial type II/III secretion system short domain PF515_17315 PF00263 Bacterial type II and III secretion system protein PF515_17330 PF00816 H-NS histone family PF515_17355 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain PF515_17355 PF03900 Porphobilinogen deaminase, C-terminal domain PF515_17360 PF04397 LytTr DNA-binding domain PF515_17360 PF00072 Response regulator receiver domain PF515_17365 PF07694 5TMR of 5TMR-LYT PF515_17365 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PF515_17365 PF06580 Histidine kinase PF515_17370 PF14698 Argininosuccinate lyase C-terminal PF515_17370 PF00206 Lyase PF515_17375 PF04362 Bacterial Fe(2+) trafficking PF515_17380 PF01895 PhoU domain PF515_17385 PF02321 Outer membrane efflux protein PF515_17390 PF00892 EamA-like transporter family PF515_17405 PF01964 Radical SAM ThiC family PF515_17405 PF13667 ThiC-associated domain PF515_17410 PF00293 NUDIX domain PF515_17415 PF00149 Calcineurin-like phosphoesterase PF515_17420 PF01258 Prokaryotic dksA/traR C4-type zinc finger PF515_17425 PF00749 tRNA synthetases class I (E and Q), catalytic domain PF515_17430 PF01098 Cell cycle protein PF515_17435 PF02875 Mur ligase family, glutamate ligase domain PF515_17435 PF08245 Mur ligase middle domain PF515_17445 PF07670 Nucleoside recognition PF515_17445 PF02421 Ferrous iron transport protein B PF515_17445 PF07664 Ferrous iron transport protein B C terminus PF515_17455 PF02899 Phage integrase, N-terminal SAM-like domain PF515_17455 PF00589 Phage integrase family PF515_17460 PF10411 Disulfide bond isomerase protein N-terminus PF515_17460 PF13098 Thioredoxin-like domain PF515_17465 PF01842 ACT domain PF515_17465 PF00742 Homoserine dehydrogenase PF515_17465 PF03447 Homoserine dehydrogenase, NAD binding domain PF515_17470 PF00291 Pyridoxal-phosphate dependent enzyme PF515_17475 PF00768 D-alanyl-D-alanine carboxypeptidase PF515_17480 PF00196 Bacterial regulatory proteins, luxR family PF515_17480 PF00072 Response regulator receiver domain PF515_17485 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PF515_17485 PF00512 His Kinase A (phospho-acceptor) domain PF515_17490 PF02954 Bacterial regulatory protein, Fis family PF515_17490 PF00072 Response regulator receiver domain PF515_17490 PF00158 Sigma-54 interaction domain PF515_17495 PF00595 PDZ domain PF515_17495 PF03572 Peptidase family S41 PF515_17500 PF06415 BPG-independent PGAM N-terminus (iPGM_N) PF515_17500 PF01676 Metalloenzyme superfamily PF515_17505 PF03739 Lipopolysaccharide export system permease LptF/LptG PF515_17515 PF00883 Cytosol aminopeptidase family, catalytic domain PF515_17515 PF02789 Cytosol aminopeptidase family, N-terminal domain PF515_17535 PF00677 Lumazine binding domain PF515_17545 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region PF515_17545 PF01872 RibD C-terminal domain PF515_17550 PF03477 ATP cone domain PF515_17555 PF00909 Ammonium Transporter Family PF515_17560 PF00543 Nitrogen regulatory protein P-II PF515_17580 PF01636 Phosphotransferase enzyme family PF515_17585 PF04655 Aminoglycoside/hydroxyurea antibiotic resistance kinase PF515_17605 PF00440 Bacterial regulatory proteins, tetR family PF515_17605 PF02909 Tetracyclin repressor-like, C-terminal domain PF515_17610 PF07690 Major Facilitator Superfamily PF515_17625 PF00905 Penicillin binding protein transpeptidase domain PF515_17650 PF01740 STAS domain PF515_17650 PF00916 Sulfate permease family PF515_17655 PF00582 Universal stress protein family PF515_17685 PF00665 Integrase core domain PF515_17710 PF00701 Dihydrodipicolinate synthetase family PF515_17725 PF03573 outer membrane porin, OprD family PF515_17730 PF00719 Inorganic pyrophosphatase PF515_17745 PF00501 AMP-binding enzyme PF515_17745 PF13193 AMP-binding enzyme C-terminal domain PF515_17750 PF03989 DNA gyrase C-terminal domain, beta-propeller PF515_17750 PF00521 DNA gyrase/topoisomerase IV, subunit A PF515_17755 PF07690 Major Facilitator Superfamily PF515_17760 PF03458 UPF0126 domain PF515_17765 PF02810 SEC-C motif PF515_17770 PF03471 Transporter associated domain PF515_17770 PF03741 Integral membrane protein TerC family PF515_17775 PF03641 Possible lysine decarboxylase PF515_17780 PF07690 Major Facilitator Superfamily PF515_17790 PF00817 impB/mucB/samB family PF515_17790 PF11799 impB/mucB/samB family C-terminal domain PF515_17790 PF11798 IMS family HHH motif PF515_17810 PF04055 Radical SAM superfamily PF515_17810 PF11842 Domain of unknown function (DUF3362) PF515_17810 PF08497 Radical SAM N-terminal PF515_17830 PF03358 NADPH-dependent FMN reductase PF515_17840 PF00291 Pyridoxal-phosphate dependent enzyme PF515_17900 PF01327 Polypeptide deformylase PF515_17910 PF02481 DNA recombination-mediator protein A PF515_17910 PF17782 DprA winged helix domain PF515_17915 PF01300 Telomere recombination PF515_17920 PF00892 EamA-like transporter family PF515_17925 PF00440 Bacterial regulatory proteins, tetR family PF515_17930 PF07690 Major Facilitator Superfamily PF515_17940 PF00255 Glutathione peroxidase PF515_17950 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain PF515_17955 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain PF515_17955 PF02874 ATP synthase alpha/beta family, beta-barrel domain PF515_17960 PF00231 ATP synthase PF515_17965 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain PF515_17965 PF00306 ATP synthase alpha/beta chain, C terminal domain PF515_17965 PF02874 ATP synthase alpha/beta family, beta-barrel domain PF515_17970 PF00213 ATP synthase delta (OSCP) subunit PF515_17975 PF00430 ATP synthase B/B' CF(0) PF515_17980 PF00137 ATP synthase subunit C PF515_17985 PF00119 ATP synthase A chain PF515_18005 PF00005 ABC transporter PF515_18010 PF00950 ABC 3 transport family PF515_18015 PF01810 LysE type translocator PF515_18020 PF04261 Dyp-type peroxidase family PF515_18030 PF03949 Malic enzyme, NAD binding domain PF515_18030 PF00390 Malic enzyme, N-terminal domain PF515_18035 PF00750 tRNA synthetases class I (R) PF515_18035 PF05746 DALR anticodon binding domain PF515_18035 PF03485 Arginyl tRNA synthetase N terminal domain PF515_18055 PF05726 Pirin C-terminal cupin domain PF515_18055 PF02678 Pirin PF515_18065 PF03551 Transcriptional regulator PadR-like family PF515_18070 PF13427 Domain of unknown function (DUF4111) PF515_18070 PF01909 Nucleotidyltransferase domain PF515_18075 PF00117 Glutamine amidotransferase class-I PF515_18075 PF00958 GMP synthase C terminal domain PF515_18075 PF02540 NAD synthase PF515_18080 PF04286 Protein of unknown function (DUF445) PF515_18085 PF07681 DoxX PF515_18090 PF09335 SNARE associated Golgi protein PF515_18105 PF13614 AAA domain PF515_18115 PF01722 BolA-like protein PF515_18130 PF01648 4'-phosphopantetheinyl transferase superfamily PF515_18135 PF12697 Alpha/beta hydrolase family PF515_18155 PF00975 Thioesterase domain PF515_18155 PF14765 Polyketide synthase dehydratase PF515_18155 PF02801 Beta-ketoacyl synthase, C-terminal domain PF515_18155 PF00550 Phosphopantetheine attachment site PF515_18155 PF08242 Methyltransferase domain PF515_18155 PF00109 Beta-ketoacyl synthase, N-terminal domain PF515_18155 PF16197 Ketoacyl-synthetase C-terminal extension PF515_18160 PF02770 Acyl-CoA dehydrogenase, middle domain PF515_18160 PF00441 Acyl-CoA dehydrogenase, C-terminal domain PF515_18160 PF02771 Acyl-CoA dehydrogenase, N-terminal domain PF515_18165 PF00501 AMP-binding enzyme PF515_18170 PF00196 Bacterial regulatory proteins, luxR family PF515_18170 PF03472 Autoinducer binding domain PF515_18180 PF00765 Autoinducer synthase PF515_18185 PF00083 Sugar (and other) transporter PF515_18185 PF07690 Major Facilitator Superfamily PF515_18190 PF00378 Enoyl-CoA hydratase/isomerase PF515_18195 PF00378 Enoyl-CoA hydratase/isomerase PF515_18200 PF00441 Acyl-CoA dehydrogenase, C-terminal domain PF515_18200 PF02771 Acyl-CoA dehydrogenase, N-terminal domain PF515_18200 PF02770 Acyl-CoA dehydrogenase, middle domain PF515_18205 PF00501 AMP-binding enzyme PF515_18205 PF13193 AMP-binding enzyme C-terminal domain PF515_18210 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase PF515_18210 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase PF515_18215 PF00171 Aldehyde dehydrogenase family PF515_18225 PF00324 Amino acid permease PF515_18230 PF00324 Amino acid permease PF515_18235 PF01042 Endoribonuclease L-PSP PF515_18240 PF01168 Alanine racemase, N-terminal domain PF515_18240 PF00842 Alanine racemase, C-terminal domain PF515_18245 PF01266 FAD dependent oxidoreductase PF515_18250 PF01037 Lrp/AsnC ligand binding domain PF515_18260 PF07715 TonB-dependent Receptor Plug Domain PF515_18260 PF00593 TonB dependent receptor PF515_18275 PF00849 RNA pseudouridylate synthase PF515_18290 PF08361 MAATS-type transcriptional repressor, C-terminal region PF515_18290 PF00440 Bacterial regulatory proteins, tetR family PF515_18300 PF00109 Beta-ketoacyl synthase, N-terminal domain PF515_18300 PF02801 Beta-ketoacyl synthase, C-terminal domain PF515_18335 PF00330 Aconitase family (aconitate hydratase) PF515_18335 PF00694 Aconitase C-terminal domain PF515_18340 PF00285 Citrate synthase, C-terminal domain PF515_18350 PF00392 Bacterial regulatory proteins, gntR family PF515_18350 PF07729 FCD domain PF515_18360 PF00155 Aminotransferase class I and II PF515_18365 PF09330 D-lactate dehydrogenase, membrane binding PF515_18365 PF01565 FAD binding domain PF515_18370 PF01070 FMN-dependent dehydrogenase PF515_18375 PF07729 FCD domain PF515_18375 PF00392 Bacterial regulatory proteins, gntR family PF515_18380 PF02652 L-lactate permease PF515_18385 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain PF515_18385 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III PF515_18385 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II PF515_18385 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I PF515_18390 PF16363 GDP-mannose 4,6 dehydratase PF515_18395 PF00342 Phosphoglucose isomerase PF515_18400 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain PF515_18400 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain PF515_18400 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain PF515_18405 PF00483 Nucleotidyl transferase PF515_18410 PF02397 Bacterial sugar transferase PF515_18415 PF00535 Glycosyl transferase family 2 PF515_18420 PF00534 Glycosyl transferases group 1 PF515_18435 PF00534 Glycosyl transferases group 1 PF515_18435 PF13439 Glycosyltransferase Family 4 PF515_18440 PF12464 Maltose acetyltransferase PF515_18440 PF14602 Hexapeptide repeat of succinyl-transferase PF515_18440 PF00132 Bacterial transferase hexapeptide (six repeats) PF515_18450 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family PF515_18455 PF00132 Bacterial transferase hexapeptide (six repeats) PF515_18460 PF01408 Oxidoreductase family, NAD-binding Rossmann fold PF515_18460 PF02894 Oxidoreductase family, C-terminal alpha/beta domain PF515_18465 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain PF515_18465 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain PF515_18465 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain PF515_18470 PF18412 Outer-membrane lipoprotein Wza C-terminal domain PF515_18470 PF10531 SLBB domain PF515_18470 PF02563 Polysaccharide biosynthesis/export protein PF515_18475 PF01451 Low molecular weight phosphotyrosine protein phosphatase PF515_18480 PF02706 Chain length determinant protein PF515_18480 PF13807 G-rich domain on putative tyrosine kinase PF515_18480 PF13614 AAA domain PF515_18485 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase PF515_18485 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase PF515_18490 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase PF515_18490 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase PF515_18495 PF03023 Lipid II flippase MurJ PF515_18500 PF01510 N-acetylmuramoyl-L-alanine amidase PF515_18505 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain PF515_18505 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain PF515_18515 PF04185 Phosphoesterase family PF515_18515 PF05506 Domain of unknown function (DUF756) PF515_18525 PF01138 3' exoribonuclease family, domain 1 PF515_18525 PF03725 3' exoribonuclease family, domain 2 PF515_18530 PF00487 Fatty acid desaturase PF515_18535 PF00175 Oxidoreductase NAD-binding domain PF515_18540 PF00440 Bacterial regulatory proteins, tetR family PF515_18545 PF08360 QacR-like protein, C-terminal region PF515_18545 PF00440 Bacterial regulatory proteins, tetR family PF515_18550 PF01323 DSBA-like thioredoxin domain PF515_18560 PF13419 Haloacid dehalogenase-like hydrolase PF515_18565 PF00106 short chain dehydrogenase PF515_18580 PF00583 Acetyltransferase (GNAT) family PF515_18580 PF00696 Amino acid kinase family PF515_18585 PF09084 NMT1/THI5 like PF515_18590 PF09084 NMT1/THI5 like PF515_18595 PF00296 Luciferase-like monooxygenase PF515_18600 PF00528 Binding-protein-dependent transport system inner membrane component PF515_18605 PF00005 ABC transporter PF515_18610 PF00440 Bacterial regulatory proteins, tetR family PF515_18610 PF08362 YcdC-like protein, C-terminal region PF515_18615 PF01048 Phosphorylase superfamily PF515_18625 PF01687 Riboflavin kinase PF515_18625 PF06574 FAD synthetase PF515_18630 PF06827 Zinc finger found in FPG and IleRS PF515_18630 PF00133 tRNA synthetases class I (I, L, M and V) PF515_18630 PF08264 Anticodon-binding domain of tRNA PF515_18635 PF01252 Signal peptidase (SPase) II PF515_18640 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase PF515_18680 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD PF515_18685 PF07859 alpha/beta hydrolase fold PF515_18705 PF03466 LysR substrate binding domain PF515_18705 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family PF515_18710 PF01025 GrpE PF515_18715 PF00012 Hsp70 protein PF515_18735 PF13406 Transglycosylase SLT domain PF515_18740 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain PF515_18740 PF02222 ATP-grasp domain PF515_18745 PF00731 AIR carboxylase PF515_18755 PF08245 Mur ligase middle domain PF515_18755 PF01225 Mur ligase family, catalytic domain PF515_18755 PF02875 Mur ligase family, glutamate ligase domain PF515_18765 PF01569 PAP2 superfamily PF515_18770 PF03741 Integral membrane protein TerC family PF515_18780 PF03738 Glutathionylspermidine synthase preATP-grasp PF515_18785 PF00355 Rieske [2Fe-2S] domain PF515_18790 PF01979 Amidohydrolase family PF515_18800 PF00156 Phosphoribosyl transferase domain PF515_18810 PF10411 Disulfide bond isomerase protein N-terminus PF515_18810 PF13098 Thioredoxin-like domain PF515_18815 PF16916 Dimerisation domain of Zinc Transporter PF515_18815 PF01545 Cation efflux family PF515_18820 PF02583 Metal-sensitive transcriptional repressor PF515_18825 PF01926 50S ribosome-binding GTPase PF515_18825 PF10396 GTP-binding protein TrmE N-terminus PF515_18825 PF12631 MnmE helical domain PF515_18830 PF02096 60Kd inner membrane protein PF515_18830 PF14849 YidC periplasmic domain PF515_18835 PF01809 Putative membrane protein insertion efficiency factor PF515_18840 PF00825 Ribonuclease P PF515_18845 PF00468 Ribosomal protein L34 PF515_18900 PF00565 Staphylococcal nuclease homologue PF515_18910 PF00816 H-NS histone family PF515_18970 PF13614 AAA domain PF515_18975 PF17762 HTH domain found in ParB protein PF515_18975 PF02195 ParB-like nuclease domain PF515_18990 PF05816 Toxic anion resistance protein (TelA) PF515_19095 PF00226 DnaJ domain PF515_19095 PF01556 DnaJ C terminal domain PF515_19095 PF00684 DnaJ central domain PF515_19130 PF18272 single-stranded DNA binding TraI N-terminal subdomain PF515_19130 PF07057 DNA helicase TraI PF515_19130 PF18340 DNA relaxase TraI 2B/2B-like domain PF515_19130 PF08751 TrwC relaxase PF515_19170 PF00239 Resolvase, N terminal domain PF515_19170 PF02796 Helix-turn-helix domain of resolvase PF515_19185 PF01464 Transglycosylase SLT domain PF515_19220 PF13098 Thioredoxin-like domain PF515_19220 PF10411 Disulfide bond isomerase protein N-terminus PF515_19255 PF06834 TraU protein PF515_19265 PF06986 Type-1V conjugative transfer system mating pair stabilisation PF515_19280 PF06122 Conjugative relaxosome accessory transposon protein PF515_19300 PF13438 Domain of unknown function (DUF4113) PF515_19300 PF00817 impB/mucB/samB family PF515_19300 PF11799 impB/mucB/samB family C-terminal domain PF515_19350 PF07715 TonB-dependent Receptor Plug Domain PF515_19350 PF00593 TonB dependent receptor