locus-tag class description PF550_00005 IPR003593 AAA+ ATPase domain PF550_00005 IPR001957 Chromosomal replication control, initiator DnaA PF550_00005 IPR020591 Chromosomal replication control, initiator DnaA-like PF550_00005 IPR018312 Chromosomal replication control, initiator DnaA, conserved site PF550_00005 IPR013317 Chromosomal replication initiator protein DnaA PF550_00005 IPR013159 Chromosomal replication initiator, DnaA C-terminal PF550_00005 IPR024633 DnaA N-terminal domain PF550_00005 IPR038454 DnaA, N-terminal domain superfamily PF550_00005 IPR027417 P-loop containing nucleoside triphosphate hydrolase PF550_00005 IPR010921 Trp repressor/replication initiator PF550_00010 IPR022634 DNA polymerase III, beta sliding clamp, N-terminal PF550_00010 IPR022637 DNA polymerase III, beta sliding clamp, central PF550_00010 IPR001001 DNA polymerase III, beta sliding clamp PF550_00010 IPR022635 DNA polymerase III, beta sliding clamp, C-terminal PF550_00015 IPR001238 DNA-binding, RecF PF550_00015 IPR027417 P-loop containing nucleoside triphosphate hydrolase PF550_00015 IPR003395 RecF/RecN/SMC, N-terminal PF550_00015 IPR042174 DNA-binding RecF, domain 2 PF550_00020 IPR013760 DNA topoisomerase, type IIA-like domain superfamily PF550_00020 IPR034160 DNA gyrase subunit B, TOPRIM domain PF550_00020 IPR006171 TOPRIM domain PF550_00020 IPR018522 DNA topoisomerase, type IIA, conserved site PF550_00020 IPR013506 DNA topoisomerase, type IIA, subunit B, domain 2 PF550_00020 IPR013759 DNA topoisomerase, type IIA, subunit B, C-terminal PF550_00020 IPR001241 DNA topoisomerase, type IIA PF550_00020 IPR011557 DNA gyrase, subunit B PF550_00020 IPR020568 Ribosomal protein S5 domain 2-type fold PF550_00020 IPR036890 Histidine kinase/HSP90-like ATPase superfamily PF550_00020 IPR003594 Histidine kinase/HSP90-like ATPase PF550_00020 IPR041423 DNA gyrase subunit B insert domain PF550_00020 IPR002288 DNA gyrase B subunit, C-terminal PF550_00020 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup PF550_00030 IPR032818 DedA family PF550_00030 IPR032816 SNARE associated Golgi protein PF550_00035 IPR003439 ABC transporter-like PF550_00035 IPR027417 P-loop containing nucleoside triphosphate hydrolase PF550_00035 IPR003593 AAA+ ATPase domain PF550_00035 IPR032781 ABC-transporter extension domain PF550_00035 IPR017871 ABC transporter, conserved site PF550_00040 IPR038404 TRAP transporter solute receptor DctP superfamily PF550_00045 IPR038404 TRAP transporter solute receptor DctP superfamily PF550_00050 IPR038404 TRAP transporter solute receptor DctP superfamily PF550_00055 IPR000361 FeS cluster biogenesis PF550_00055 IPR016092 FeS cluster insertion protein PF550_00055 IPR017870 FeS cluster insertion, C-terminal, conserved site PF550_00055 IPR023063 FeS cluster insertion protein ErpA PF550_00055 IPR035903 HesB-like domain superfamily PF550_00060 IPR029058 Alpha/Beta hydrolase fold PF550_00060 IPR000073 Alpha/beta hydrolase fold-1 PF550_00060 IPR000639 Epoxide hydrolase-like PF550_00065 IPR005338 Anhydro-N-acetylmuramic acid kinase PF550_00070 IPR024108 Tyrosine-tRNA ligase, bacterial-type, type 2 PF550_00070 IPR024088 Tyrosine-tRNA ligase, bacterial-type PF550_00070 IPR002307 Tyrosine-tRNA ligase PF550_00070 IPR002942 RNA-binding S4 domain PF550_00070 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold PF550_00070 IPR002305 Aminoacyl-tRNA synthetase, class Ic PF550_00070 IPR036986 RNA-binding S4 domain superfamily PF550_00070 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site PF550_00110 IPR000175 Sodium:neurotransmitter symporter PF550_00110 IPR037272 Sodium:neurotransmitter symporter superfamily PF550_00120 IPR035926 NusB-like superfamily PF550_00120 IPR018314 Bacterial Fmu (Sun)/eukaryotic nucleolar NOL1/Nop2p, conserved site PF550_00120 IPR001678 SAM-dependent methyltransferase RsmB/NOP2-type PF550_00120 IPR006027 NusB/RsmB/TIM44 PF550_00120 IPR023267 RNA (C5-cytosine) methyltransferase PF550_00120 IPR004573 rRNA small subunit methyltransferase B PF550_00120 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase PF550_00125 IPR036477 Formyl transferase, N-terminal domain superfamily PF550_00125 IPR002376 Formyl transferase, N-terminal PF550_00125 IPR037022 Formyl transferase, C-terminal domain superfamily PF550_00125 IPR005793 Formyl transferase, C-terminal PF550_00125 IPR005794 Methionyl-tRNA formyltransferase PF550_00125 IPR041711 Methionyl-tRNA formyltransferase, N-terminal domain PF550_00125 IPR011034 Formyl transferase-like, C-terminal domain superfamily PF550_00130 IPR037237 IlvD/EDD, N-terminal domain PF550_00130 IPR020558 Dihydroxy-acid/6-phosphogluconate dehydratase, conserved site PF550_00130 IPR000581 Dihydroxy-acid/6-phosphogluconate dehydratase PF550_00130 IPR042096 Dihydroxy-acid dehydratase, C-terminal PF550_00130 IPR004404 Dihydroxy-acid dehydratase PF550_00145 IPR005119 LysR, substrate-binding PF550_00145 IPR000847 Transcription regulator HTH, LysR PF550_00145 IPR036388 Winged helix-like DNA-binding domain superfamily PF550_00145 IPR036390 Winged helix DNA-binding domain superfamily PF550_00150 IPR006042 Xanthine/uracil permease PF550_00150 IPR006043 Xanthine/uracil/vitamin C permease PF550_00150 IPR019918 Pyrimidine permease RutG, predicted PF550_00155 IPR018129 Phosphoenolpyruvate carboxylase, Lys active site PF550_00155 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain superfamily PF550_00155 IPR021135 Phosphoenolpyruvate carboxylase PF550_00155 IPR022805 Phosphoenolpyruvate carboxylase, bacterial/plant-type PF550_00155 IPR033129 Phosphoenolpyruvate carboxylase, His active site PF550_00165 IPR036397 Ribonuclease H superfamily PF550_00165 IPR012337 Ribonuclease H-like superfamily PF550_00165 IPR001584 Integrase, catalytic core PF550_00165 IPR032874 DDE domain PF550_00180 IPR027417 P-loop containing nucleoside triphosphate hydrolase PF550_00180 IPR025669 AAA domain PF550_00190 IPR036065 BolA-like superfamily PF550_00190 IPR002634 BolA protein PF550_00210 IPR039552 Transposase IS66, C-terminal PF550_00210 IPR004291 Transposase, IS66 PF550_00210 IPR024463 Transposase TnpC, homeodomain PF550_00210 IPR024474 Zinc-finger binding domain of transposase IS66 PF550_00220 IPR009057 Homeobox-like domain superfamily PF550_00230 IPR020904 Short-chain dehydrogenase/reductase, conserved site PF550_00230 IPR036291 NAD(P)-binding domain superfamily PF550_00230 IPR016040 NAD(P)-binding domain PF550_00230 IPR005888 dTDP-glucose 4,6-dehydratase PF550_00245 IPR042099 AMP-dependent synthetase-like superfamily PF550_00245 IPR020845 AMP-binding, conserved site PF550_00245 IPR000873 AMP-dependent synthetase/ligase PF550_00245 IPR006162 Phosphopantetheine attachment site PF550_00245 IPR009081 Phosphopantetheine binding ACP domain PF550_00245 IPR020806 Polyketide synthase, phosphopantetheine-binding domain PF550_00245 IPR001242 Condensation domain PF550_00245 IPR025110 AMP-binding enzyme, C-terminal domain PF550_00245 IPR036736 ACP-like superfamily PF550_00245 IPR029058 Alpha/Beta hydrolase fold PF550_00245 IPR010071 Amino acid adenylation domain PF550_00245 IPR001031 Thioesterase PF550_00245 IPR023213 Chloramphenicol acetyltransferase-like domain superfamily PF550_00250 IPR001031 Thioesterase PF550_00250 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase PF550_00250 IPR006162 Phosphopantetheine attachment site PF550_00250 IPR009081 Phosphopantetheine binding ACP domain PF550_00250 IPR020841 Polyketide synthase, beta-ketoacyl synthase domain PF550_00250 IPR042104 Polyketide synthase, dehydratase domain superfamily PF550_00250 IPR020806 Polyketide synthase, phosphopantetheine-binding domain PF550_00250 IPR029058 Alpha/Beta hydrolase fold PF550_00250 IPR036736 ACP-like superfamily PF550_00250 IPR018201 Beta-ketoacyl synthase, active site PF550_00250 IPR014031 Beta-ketoacyl synthase, C-terminal PF550_00250 IPR016039 Thiolase-like PF550_00250 IPR013217 Methyltransferase type 12 PF550_00250 IPR032821 Ketoacyl-synthetase, C-terminal extension PF550_00250 IPR020615 Thiolase, acyl-enzyme intermediate active site PF550_00250 IPR020807 Polyketide synthase, dehydratase domain PF550_00250 IPR014030 Beta-ketoacyl synthase, N-terminal PF550_00255 IPR006089 Acyl-CoA dehydrogenase, conserved site PF550_00255 IPR006091 Acyl-CoA oxidase/dehydrogenase, central domain PF550_00255 IPR036250 Acyl-CoA dehydrogenase-like, C-terminal PF550_00255 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal PF550_00255 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal PF550_00255 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily PF550_00255 IPR037069 Acyl-CoA dehydrogenase/oxidase, N-terminal domain superfamily PF550_00260 IPR000873 AMP-dependent synthetase/ligase PF550_00260 IPR042099 AMP-dependent synthetase-like superfamily PF550_00265 IPR016032 Signal transduction response regulator, C-terminal effector PF550_00265 IPR005143 Transcription factor LuxR-like, autoinducer-binding domain PF550_00265 IPR000792 Transcription regulator LuxR, C-terminal PF550_00265 IPR036388 Winged helix-like DNA-binding domain superfamily PF550_00265 IPR036693 Transcription factor LuxR-like, autoinducer-binding domain superfamily PF550_00275 IPR016181 Acyl-CoA N-acyltransferase PF550_00275 IPR001690 Autoinducer synthase PF550_00280 IPR011701 Major facilitator superfamily PF550_00280 IPR005829 Sugar transporter, conserved site PF550_00280 IPR036259 MFS transporter superfamily PF550_00280 IPR005828 Major facilitator, sugar transporter-like PF550_00280 IPR004736 MFS transporter, metabolite:H symporter PF550_00280 IPR020846 Major facilitator superfamily domain PF550_00285 IPR029045 ClpP/crotonase-like domain superfamily PF550_00285 IPR018376 Enoyl-CoA hydratase/isomerase, conserved site PF550_00285 IPR001753 Enoyl-CoA hydratase/isomerase PF550_00285 IPR014748 Enoyl-CoA hydratase, C-terminal PF550_00290 IPR014748 Enoyl-CoA hydratase, C-terminal PF550_00290 IPR029045 ClpP/crotonase-like domain superfamily PF550_00290 IPR001753 Enoyl-CoA hydratase/isomerase PF550_00290 IPR018376 Enoyl-CoA hydratase/isomerase, conserved site PF550_00295 IPR006089 Acyl-CoA dehydrogenase, conserved site PF550_00295 IPR006091 Acyl-CoA oxidase/dehydrogenase, central domain PF550_00295 IPR036250 Acyl-CoA dehydrogenase-like, C-terminal PF550_00295 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal PF550_00295 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal PF550_00295 IPR037069 Acyl-CoA dehydrogenase/oxidase, N-terminal domain superfamily PF550_00295 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily PF550_00300 IPR042099 AMP-dependent synthetase-like superfamily PF550_00300 IPR000873 AMP-dependent synthetase/ligase PF550_00300 IPR020845 AMP-binding, conserved site PF550_00300 IPR025110 AMP-binding enzyme, C-terminal domain PF550_00305 IPR029154 3-hydroxyisobutyrate dehydrogenase, NAD-binding domain PF550_00305 IPR036291 NAD(P)-binding domain superfamily PF550_00305 IPR015815 3-hydroxyisobutyrate dehydrogenase-related PF550_00305 IPR011548 3-hydroxyisobutyrate dehydrogenase PF550_00305 IPR006115 6-phosphogluconate dehydrogenase, NADP-binding PF550_00305 IPR013328 6-phosphogluconate dehydrogenase, domain 2 PF550_00305 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily PF550_00305 IPR002204 3-hydroxyisobutyrate dehydrogenase-related, conserved site PF550_00310 IPR016161 Aldehyde/histidinol dehydrogenase PF550_00310 IPR010061 Methylmalonate-semialdehyde dehydrogenase PF550_00310 IPR016163 Aldehyde dehydrogenase, C-terminal PF550_00310 IPR015590 Aldehyde dehydrogenase domain PF550_00310 IPR016160 Aldehyde dehydrogenase, cysteine active site PF550_00310 IPR016162 Aldehyde dehydrogenase, N-terminal PF550_00320 IPR004840 Amino acid permease, conserved site PF550_00320 IPR004841 Amino acid permease/ SLC12A domain PF550_00330 IPR012337 Ribonuclease H-like superfamily PF550_00330 IPR032874 DDE domain PF550_00330 IPR001584 Integrase, catalytic core PF550_00330 IPR036397 Ribonuclease H superfamily PF550_00345 IPR001305 Heat shock protein DnaJ, cysteine-rich domain PF550_00345 IPR036869 Chaperone J-domain superfamily PF550_00345 IPR036410 Heat shock protein DnaJ, cysteine-rich domain superfamily PF550_00345 IPR008971 HSP40/DnaJ peptide-binding PF550_00345 IPR018253 DnaJ domain, conserved site PF550_00345 IPR001623 DnaJ domain PF550_00345 IPR002939 Chaperone DnaJ, C-terminal PF550_00345 IPR012724 Chaperone DnaJ PF550_00355 IPR022663 Dihydrodipicolinate reductase, C-terminal PF550_00355 IPR000846 Dihydrodipicolinate reductase, N-terminal PF550_00355 IPR022664 Dihydrodipicolinate reductase, conserved site PF550_00355 IPR023940 Dihydrodipicolinate reductase PF550_00355 IPR036291 NAD(P)-binding domain superfamily PF550_00365 IPR011701 Major facilitator superfamily PF550_00365 IPR020846 Major facilitator superfamily domain PF550_00365 IPR036259 MFS transporter superfamily PF550_00370 IPR018170 Aldo/keto reductase, conserved site PF550_00370 IPR023210 NADP-dependent oxidoreductase domain PF550_00370 IPR020471 Aldo/keto reductase PF550_00370 IPR036812 NADP-dependent oxidoreductase domain superfamily PF550_00375 IPR000847 Transcription regulator HTH, LysR PF550_00375 IPR036388 Winged helix-like DNA-binding domain superfamily PF550_00375 IPR036390 Winged helix DNA-binding domain superfamily PF550_00375 IPR005119 LysR, substrate-binding PF550_00390 IPR036390 Winged helix DNA-binding domain superfamily PF550_00390 IPR004839 Aminotransferase, class I/classII PF550_00390 IPR015424 Pyridoxal phosphate-dependent transferase PF550_00390 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 PF550_00390 IPR015421 Pyridoxal phosphate-dependent transferase, major domain PF550_00390 IPR000524 Transcription regulator HTH, GntR PF550_00390 IPR036388 Winged helix-like DNA-binding domain superfamily PF550_00395 IPR011032 GroES-like superfamily PF550_00395 IPR029752 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain conserved site 1 PF550_00395 IPR013149 Alcohol dehydrogenase, C-terminal PF550_00395 IPR013154 Alcohol dehydrogenase, N-terminal PF550_00395 IPR002328 Alcohol dehydrogenase, zinc-type, conserved site PF550_00395 IPR020843 Polyketide synthase, enoylreductase domain PF550_00395 IPR036291 NAD(P)-binding domain superfamily PF550_00400 IPR011257 DNA glycosylase PF550_00400 IPR005019 Methyladenine glycosylase PF550_00400 IPR004597 DNA-3-methyladenine glycosylase I PF550_00415 IPR015797 NUDIX hydrolase-like domain superfamily PF550_00415 IPR029119 MutY, C-terminal PF550_00415 IPR023170 Helix-turn-helix, base-excision DNA repair, C-terminal PF550_00415 IPR000445 Helix-hairpin-helix motif PF550_00415 IPR003651 Endonuclease III-like, iron-sulphur cluster loop motif PF550_00415 IPR004035 Endonuclease III, iron-sulphur binding site PF550_00415 IPR004036 Endonuclease III-like, conserved site-2 PF550_00415 IPR011257 DNA glycosylase PF550_00415 IPR005760 A/G-specific adenine glycosylase MutY PF550_00415 IPR003265 HhH-GPD domain PF550_00430 IPR009760 Protein of unknown function DUF1328 PF550_00435 IPR005358 Putative zinc- or iron-chelating domain containing protein PF550_00435 IPR008228 Uncharacterised conserved protein UCP006173 PF550_00440 IPR011041 Soluble quinoprotein glucose/sorbosone dehydrogenase PF550_00440 IPR012938 Glucose/Sorbosone dehydrogenase PF550_00440 IPR011042 Six-bladed beta-propeller, TolB-like PF550_00445 IPR003593 AAA+ ATPase domain PF550_00445 IPR032423 AAA C-terminal domain PF550_00445 IPR003959 ATPase, AAA-type, core PF550_00445 IPR008921 DNA polymerase III, clamp loader complex, gamma/delta/delta subunit, C-terminal PF550_00445 IPR021886 MgsA AAA+ ATPase C-terminal PF550_00445 IPR027417 P-loop containing nucleoside triphosphate hydrolase PF550_00450 IPR023271 Aquaporin-like PF550_00450 IPR000292 Formate/nitrite transporter PF550_00460 IPR028923 SAICAR synthetase/ADE2, N-terminal PF550_00460 IPR033934 Bacterial and archaeal 5-aminoimidazole-4-(N-succinylcarboxamide) ribonucleotide synthase PF550_00460 IPR001636 Phosphoribosylaminoimidazole-succinocarboxamide synthase PF550_00460 IPR018236 SAICAR synthetase, conserved site PF550_00470 IPR020624 Schiff base-forming aldolase, conserved site PF550_00470 IPR020625 Schiff base-forming aldolase, active site PF550_00470 IPR013785 Aldolase-type TIM barrel PF550_00470 IPR005263 4-hydroxy-tetrahydrodipicolinate synthase, DapA PF550_00470 IPR002220 DapA-like PF550_00475 IPR000868 Isochorismatase-like PF550_00475 IPR036380 Isochorismatase-like superfamily PF550_00480 IPR002657 Bile acid:sodium symporter/arsenical resistance protein Acr3 PF550_00480 IPR004710 Bile acid:sodium symporter PF550_00480 IPR038770 Sodium/solute symporter superfamily PF550_00490 IPR007553 Domain of unknown function DUF523 PF550_00495 IPR004360 Glyoxalase/fosfomycin resistance/dioxygenase domain PF550_00495 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase PF550_00495 IPR037523 Vicinal oxygen chelate (VOC) domain PF550_00495 IPR041735 4-hydroxyphenylpyruvate dioxygenase, C-terminal PF550_00495 IPR005956 4-hydroxyphenylpyruvate dioxygenase PF550_00495 IPR041736 4-hydroxyphenylpyruvate dioxygenase, N-terminal PF550_00505 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase PF550_00505 IPR004360 Glyoxalase/fosfomycin resistance/dioxygenase domain PF550_00505 IPR022858 Metallothiol transferase FosB PF550_00505 IPR037523 Vicinal oxygen chelate (VOC) domain PF550_00510 IPR034333 Glutathione S-transferases, class Zeta , N-terminal PF550_00510 IPR034330 Glutathione S-transferases, class Zeta , C-terminal PF550_00510 IPR005955 Glutathione S-transferases, class Zeta PF550_00510 IPR004045 Glutathione S-transferase, N-terminal PF550_00510 IPR036249 Thioredoxin-like superfamily PF550_00510 IPR040079 Glutathione Transferase family PF550_00510 IPR036282 Glutathione S-transferase, C-terminal domain superfamily PF550_00510 IPR010987 Glutathione S-transferase, C-terminal-like PF550_00510 IPR004046 Glutathione S-transferase, C-terminal PF550_00520 IPR004840 Amino acid permease, conserved site PF550_00520 IPR004841 Amino acid permease/ SLC12A domain PF550_00530 IPR027417 P-loop containing nucleoside triphosphate hydrolase PF550_00530 IPR011629 Cobalamin (vitamin B12) biosynthesis CobW-like, C-terminal PF550_00530 IPR003495 CobW/HypB/UreG, nucleotide-binding domain PF550_00540 IPR028978 Chorismate pyruvate-lyase/UbiC transcription regulator-associated domain superfamily PF550_00540 IPR010248 Histidine utilization repressor PF550_00540 IPR000524 Transcription regulator HTH, GntR PF550_00540 IPR011663 UbiC transcription regulator-associated PF550_00540 IPR036388 Winged helix-like DNA-binding domain superfamily PF550_00540 IPR036390 Winged helix DNA-binding domain superfamily PF550_00555 IPR012337 Ribonuclease H-like superfamily PF550_00555 IPR032874 DDE domain PF550_00555 IPR036397 Ribonuclease H superfamily PF550_00555 IPR001584 Integrase, catalytic core PF550_00560 IPR003439 ABC transporter-like PF550_00560 IPR017871 ABC transporter, conserved site PF550_00560 IPR030679 ABC-type amino acid transport system, ATPase component, HisP-type PF550_00560 IPR003593 AAA+ ATPase domain PF550_00560 IPR027417 P-loop containing nucleoside triphosphate hydrolase PF550_00565 IPR011009 Protein kinase-like domain superfamily PF550_00565 IPR024165 Aminoglycoside 3-phosphotransferase PF550_00565 IPR002575 Aminoglycoside phosphotransferase PF550_00570 IPR019646 Aminoglycoside-2''-adenylyltransferase PF550_00575 IPR032874 DDE domain PF550_00575 IPR001584 Integrase, catalytic core PF550_00575 IPR012337 Ribonuclease H-like superfamily PF550_00575 IPR036397 Ribonuclease H superfamily PF550_00585 IPR032818 DedA family PF550_00585 IPR032816 SNARE associated Golgi protein PF550_00590 IPR032808 DoxX family PF550_00595 IPR007383 Protein of unknown function DUF445 PF550_00595 IPR016991 Protein of unknown function UCP032178 PF550_00600 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold PF550_00600 IPR022310 NAD/GMP synthase PF550_00600 IPR022955 GMP synthase PF550_00600 IPR004739 GMP synthase, glutamine amidotransferase PF550_00600 IPR001674 GMP synthase, C-terminal PF550_00600 IPR017926 Glutamine amidotransferase PF550_00600 IPR029062 Class I glutamine amidotransferase-like PF550_00600 IPR025777 GMP synthetase ATP pyrophosphatase domain PF550_00605 IPR024172 Streptomycin 3''-adenylyltransferase PF550_00605 IPR025184 Domain of unknown function DUF4111 PF550_00605 IPR002934 Polymerase, nucleotidyl transferase domain PF550_00610 IPR005149 Transcription regulator PadR, N-terminal PF550_00610 IPR036388 Winged helix-like DNA-binding domain superfamily PF550_00610 IPR036390 Winged helix DNA-binding domain superfamily PF550_00620 IPR011051 RmlC-like cupin domain superfamily PF550_00620 IPR012093 Pirin PF550_00620 IPR003829 Pirin, N-terminal domain PF550_00620 IPR014710 RmlC-like jelly roll fold PF550_00620 IPR008778 Pirin, C-terminal domain PF550_00640 IPR001278 Arginine-tRNA ligase PF550_00640 IPR036695 Arginyl tRNA synthetase N-terminal domain superfamily PF550_00640 IPR035684 Arginyl-tRNA synthetase, catalytic core domain PF550_00640 IPR008909 DALR anticodon binding PF550_00640 IPR009080 Aminoacyl-tRNA synthetase, class Ia, anticodon-binding PF550_00640 IPR005148 Arginyl tRNA synthetase N-terminal domain PF550_00645 IPR015884 Malic enzyme, conserved site PF550_00645 IPR012301 Malic enzyme, N-terminal domain PF550_00645 IPR037062 Malic enzyme, N-terminal domain superfamily PF550_00645 IPR023667 NAD-dependent malic enzyme, proteobacteria PF550_00645 IPR036291 NAD(P)-binding domain superfamily PF550_00645 IPR012302 Malic enzyme, NAD-binding PF550_00645 IPR001891 Malic oxidoreductase PF550_00655 IPR006314 Dyp-type peroxidase PF550_00655 IPR011008 Dimeric alpha-beta barrel PF550_00660 IPR001123 Amino acid exporter protein, LeuE-type PF550_00660 IPR004778 Homoserine/Threonine efflux protein PF550_00665 IPR037294 ABC transporter, BtuC-like PF550_00665 IPR001626 ABC transporter, TroCD-like PF550_00670 IPR003593 AAA+ ATPase domain PF550_00670 IPR003439 ABC transporter-like PF550_00670 IPR017871 ABC transporter, conserved site PF550_00670 IPR017882 Zinc import ATP-binding protein ZnuC PF550_00670 IPR027417 P-loop containing nucleoside triphosphate hydrolase PF550_00690 IPR035908 ATP synthase, F0 complex, subunit A superfamily PF550_00690 IPR023011 ATP synthase, F0 complex, subunit A, active site PF550_00690 IPR000568 ATP synthase, F0 complex, subunit A PF550_00695 IPR002379 V-ATPase proteolipid subunit C-like domain PF550_00695 IPR035921 F/V-ATP synthase subunit C superfamily PF550_00695 IPR005953 ATP synthase, F0 complex, subunit C, bacterial/chloroplast PF550_00695 IPR000454 ATP synthase, F0 complex, subunit C PF550_00695 IPR020537 ATP synthase, F0 complex, subunit C, DCCD-binding site PF550_00695 IPR038662 F1F0 ATP synthase subunit C superfamily PF550_00700 IPR028987 F-type ATP synthase subunit B-like, membrane domain superfamily PF550_00700 IPR002146 ATP synthase, F0 complex, subunit b/b', bacterial/chloroplast PF550_00700 IPR005864 ATP synthase, F0 complex, subunit b, bacterial PF550_00705 IPR026015 F1F0 ATP synthase OSCP/delta subunit, N-terminal domain superfamily PF550_00705 IPR020781 ATPase, OSCP/delta subunit, conserved site PF550_00705 IPR000711 ATPase, OSCP/delta subunit PF550_00710 IPR038376 ATP synthase, alpha subunit, C-terminal domain superfamily PF550_00710 IPR000793 ATP synthase, alpha subunit, C-terminal PF550_00710 IPR000194 ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain PF550_00710 IPR027417 P-loop containing nucleoside triphosphate hydrolase PF550_00710 IPR020003 ATPase, alpha/beta subunit, nucleotide-binding domain, active site PF550_00710 IPR036121 ATPase, F1/V1/A1 complex, alpha/beta subunit, N-terminal domain superfamily PF550_00710 IPR023366 ATP synthase subunit alpha, N-terminal domain-like superfamily PF550_00710 IPR004100 ATPase, F1/V1/A1 complex, alpha/beta subunit, N-terminal domain PF550_00710 IPR005294 ATP synthase, F1 complex, alpha subunit PF550_00710 IPR033732 ATP synthase, F1 complex, alpha subunit nucleotide-binding domain PF550_00715 IPR035968 ATP synthase, F1 complex, gamma subunit superfamily PF550_00715 IPR000131 ATP synthase, F1 complex, gamma subunit PF550_00715 IPR023632 ATP synthase, F1 complex, gamma subunit conserved site PF550_00720 IPR036121 ATPase, F1/V1/A1 complex, alpha/beta subunit, N-terminal domain superfamily PF550_00720 IPR003593 AAA+ ATPase domain PF550_00720 IPR005722 ATP synthase, F1 complex, beta subunit PF550_00720 IPR020003 ATPase, alpha/beta subunit, nucleotide-binding domain, active site PF550_00720 IPR004100 ATPase, F1/V1/A1 complex, alpha/beta subunit, N-terminal domain PF550_00720 IPR000194 ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain PF550_00720 IPR024034 ATPase, F1/V1 complex, beta/alpha subunit, C-terminal PF550_00720 IPR027417 P-loop containing nucleoside triphosphate hydrolase PF550_00725 IPR020546 ATP synthase, F1 complex, delta/epsilon subunit, N-terminal PF550_00725 IPR036771 F0F1 ATP synthase delta/epsilon subunit, N-terminal PF550_00725 IPR036794 ATP synthase delta/epsilon subunit, C-terminal domain superfamily PF550_00725 IPR001469 ATP synthase, F1 complex, delta/epsilon subunit PF550_00730 IPR022548 Domain of unknown function DUF2846 PF550_00730 IPR016596 Protein of unknown function UCP012335 PF550_00740 IPR033674 Thioredoxin/glutathione peroxidase BtuE PF550_00740 IPR000889 Glutathione peroxidase PF550_00740 IPR036249 Thioredoxin-like superfamily PF550_00740 IPR029760 Glutathione peroxidase conserved site PF550_00740 IPR029759 Glutathione peroxidase active site PF550_00750 IPR036259 MFS transporter superfamily PF550_00750 IPR020846 Major facilitator superfamily domain PF550_00750 IPR011701 Major facilitator superfamily PF550_00755 IPR036271 Tetracyclin repressor-like, C-terminal domain superfamily PF550_00755 IPR009057 Homeobox-like domain superfamily PF550_00755 IPR001647 DNA-binding HTH domain, TetR-type PF550_00760 IPR000620 EamA domain PF550_00765 IPR017945 DHBP synthase RibB-like alpha/beta domain superfamily PF550_00765 IPR023535 Threonylcarbamoyl-AMP synthase PF550_00765 IPR006070 YrdC-like domain PF550_00770 IPR036388 Winged helix-like DNA-binding domain superfamily PF550_00770 IPR041614 DprA, winged helix domain PF550_00770 IPR003488 DNA recombination-mediator protein A PF550_00780 IPR036821 Peptide deformylase superfamily PF550_00780 IPR023635 Peptide deformylase PF550_00840 IPR036052 Tryptophan synthase beta subunit-like PLP-dependent enzyme PF550_00840 IPR001926 Pyridoxal-phosphate dependent enzyme PF550_00840 IPR001216 Cysteine synthase/cystathionine beta-synthase, pyridoxal-phosphate attachment site PF550_00840 IPR005859 Cysteine synthase CysK PF550_00840 IPR005856 Cysteine synthase PF550_00850 IPR010089 Flavoprotein WrbA-like PF550_00850 IPR029039 Flavoprotein-like superfamily PF550_00850 IPR008254 Flavodoxin/nitric oxide synthase PF550_00850 IPR005025 NADPH-dependent FMN reductase-like PF550_00850 IPR037513 NAD(P)H dehydrogenase (quinone), prokaryotic PF550_00870 IPR020612 Methylthiotransferase, conserved site PF550_00870 IPR006638 Elp3/MiaB/NifB PF550_00870 IPR013704 Uncharacterised protein family UPF0313, N-terminal PF550_00870 IPR024560 Uncharacterised protein family UPF0313, C-terminal PF550_00870 IPR022946 Uncharacterised protein family UPF0313 PF550_00870 IPR023404 Radical SAM, alpha/beta horseshoe PF550_00870 IPR007197 Radical SAM PF550_00890 IPR024728 DNA polymerase type-Y, HhH motif PF550_00890 IPR001126 UmuC domain PF550_00890 IPR017961 DNA polymerase, Y-family, little finger domain PF550_00890 IPR036775 DNA polymerase, Y-family, little finger domain superfamily PF550_00890 IPR022880 DNA polymerase IV PF550_00900 IPR020846 Major facilitator superfamily domain PF550_00900 IPR023721 Multidrug resistance protein MdtD PF550_00900 IPR011701 Major facilitator superfamily PF550_00900 IPR036259 MFS transporter superfamily PF550_00905 IPR005269 Cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG PF550_00905 IPR031100 LOG family PF550_00910 IPR000644 CBS domain PF550_00910 IPR036318 FAD-binding, type PCMH-like superfamily PF550_00910 IPR016169 FAD-binding, type PCMH, subdomain 2 PF550_00910 IPR005496 Integral membrane protein TerC PF550_00910 IPR005170 Transporter-associated domain PF550_00915 IPR004027 SEC-C motif PF550_00915 IPR032710 NTF2-like domain superfamily PF550_00915 IPR023006 Uncharacterised protein family UPF0225 PF550_00920 IPR005115 Uncharacterised domain UPF0126 PF550_00925 IPR011701 Major facilitator superfamily PF550_00925 IPR036259 MFS transporter superfamily PF550_00925 IPR020846 Major facilitator superfamily domain PF550_00925 IPR005829 Sugar transporter, conserved site PF550_00930 IPR005742 DNA topoisomerase IV, subunit A, Gram-negative PF550_00930 IPR013757 Type IIA DNA topoisomerase subunit A, alpha-helical domain superfamily PF550_00930 IPR006691 DNA gyrase/topoisomerase IV, subunit A, C-terminal repeat PF550_00930 IPR002205 DNA topoisomerase, type IIA, subunit A/C-terminal PF550_00930 IPR013760 DNA topoisomerase, type IIA-like domain superfamily PF550_00930 IPR035516 DNA gyrase/topoisomerase IV, subunit A, C-terminal PF550_00930 IPR013758 DNA topoisomerase, type IIA, subunit A/ C-terminal, alpha-beta PF550_00935 IPR025110 AMP-binding enzyme, C-terminal domain PF550_00935 IPR000873 AMP-dependent synthetase/ligase PF550_00935 IPR042099 AMP-dependent synthetase-like superfamily PF550_00935 IPR020845 AMP-binding, conserved site PF550_00950 IPR008162 Inorganic pyrophosphatase PF550_00950 IPR036649 Inorganic pyrophosphatase superfamily PF550_00955 IPR005318 Outer membrane porin, bacterial PF550_00955 IPR023614 Porin domain superfamily PF550_00970 IPR020624 Schiff base-forming aldolase, conserved site PF550_00970 IPR005263 4-hydroxy-tetrahydrodipicolinate synthase, DapA PF550_00970 IPR013785 Aldolase-type TIM barrel PF550_00970 IPR020625 Schiff base-forming aldolase, active site PF550_00970 IPR002220 DapA-like PF550_00975 IPR036409 Class II aldolase/adducin N-terminal domain superfamily PF550_00975 IPR001303 Class II aldolase/adducin N-terminal PF550_00980 IPR036390 Winged helix DNA-binding domain superfamily PF550_00980 IPR015424 Pyridoxal phosphate-dependent transferase PF550_00980 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 PF550_00980 IPR015421 Pyridoxal phosphate-dependent transferase, major domain PF550_00980 IPR000524 Transcription regulator HTH, GntR PF550_00980 IPR036388 Winged helix-like DNA-binding domain superfamily PF550_00980 IPR004839 Aminotransferase, class I/classII PF550_00995 IPR012337 Ribonuclease H-like superfamily PF550_00995 IPR001584 Integrase, catalytic core PF550_00995 IPR036397 Ribonuclease H superfamily PF550_01010 IPR009057 Homeobox-like domain superfamily PF550_01020 IPR039552 Transposase IS66, C-terminal PF550_01020 IPR004291 Transposase, IS66 PF550_01020 IPR024463 Transposase TnpC, homeodomain PF550_01020 IPR024474 Zinc-finger binding domain of transposase IS66 PF550_01030 IPR036271 Tetracyclin repressor-like, C-terminal domain superfamily PF550_01030 IPR001647 DNA-binding HTH domain, TetR-type PF550_01030 IPR009057 Homeobox-like domain superfamily PF550_01050 IPR041602 Quercetin 2,3-dioxygenase, C-terminal cupin domain PF550_01050 IPR011051 RmlC-like cupin domain superfamily PF550_01050 IPR003829 Pirin, N-terminal domain PF550_01050 IPR012093 Pirin PF550_01050 IPR014710 RmlC-like jelly roll fold PF550_01055 IPR001926 Pyridoxal-phosphate dependent enzyme PF550_01055 IPR000634 Serine/threonine dehydratase, pyridoxal-phosphate-binding site PF550_01055 IPR036052 Tryptophan synthase beta subunit-like PLP-dependent enzyme PF550_01060 IPR039446 Transcriptional regulator DauR-like PF550_01060 IPR039445 Transcriptional regulator DauR-like, HTH domain PF550_01060 IPR013559 YheO-like PF550_01070 IPR006162 Phosphopantetheine attachment site PF550_01070 IPR009081 Phosphopantetheine binding ACP domain PF550_01070 IPR001242 Condensation domain PF550_01070 IPR010060 Non-ribosomal peptide synthase PF550_01070 IPR023213 Chloramphenicol acetyltransferase-like domain superfamily PF550_01070 IPR042099 AMP-dependent synthetase-like superfamily PF550_01070 IPR000873 AMP-dependent synthetase/ligase PF550_01070 IPR020845 AMP-binding, conserved site PF550_01070 IPR025110 AMP-binding enzyme, C-terminal domain PF550_01070 IPR036736 ACP-like superfamily PF550_01070 IPR010071 Amino acid adenylation domain PF550_01070 IPR020806 Polyketide synthase, phosphopantetheine-binding domain PF550_01075 IPR020802 Polyketide synthase, thioesterase domain PF550_01075 IPR001031 Thioesterase PF550_01075 IPR020806 Polyketide synthase, phosphopantetheine-binding domain PF550_01075 IPR009081 Phosphopantetheine binding ACP domain PF550_01075 IPR023213 Chloramphenicol acetyltransferase-like domain superfamily PF550_01075 IPR036736 ACP-like superfamily PF550_01075 IPR020845 AMP-binding, conserved site PF550_01075 IPR029058 Alpha/Beta hydrolase fold PF550_01075 IPR010071 Amino acid adenylation domain PF550_01075 IPR025110 AMP-binding enzyme, C-terminal domain PF550_01075 IPR001242 Condensation domain PF550_01075 IPR042099 AMP-dependent synthetase-like superfamily PF550_01075 IPR000873 AMP-dependent synthetase/ligase PF550_01080 IPR037294 ABC transporter, BtuC-like PF550_01080 IPR000522 ABC transporter, permease protein, BtuC-like PF550_01085 IPR037294 ABC transporter, BtuC-like PF550_01085 IPR000522 ABC transporter, permease protein, BtuC-like PF550_01090 IPR003593 AAA+ ATPase domain PF550_01090 IPR003439 ABC transporter-like PF550_01090 IPR017871 ABC transporter, conserved site PF550_01090 IPR027417 P-loop containing nucleoside triphosphate hydrolase PF550_01095 IPR002491 ABC transporter periplasmic binding domain PF550_01095 IPR033870 FatB domain PF550_01100 IPR010105 TonB-dependent siderophore receptor PF550_01100 IPR000531 TonB-dependent receptor-like, beta-barrel PF550_01100 IPR036942 TonB-dependent receptor-like, beta-barrel domain superfamily PF550_01100 IPR010916 TonB box, conserved site PF550_01100 IPR039423 TonB-dependent receptor-like PF550_01100 IPR037066 TonB-dependent receptor, plug domain superfamily PF550_01100 IPR012910 TonB-dependent receptor, plug domain PF550_01100 IPR010917 TonB-dependent receptor, conserved site PF550_01100 IPR030149 TonB-dependent siderophore receptor FcuA/FatA PF550_01105 IPR025700 L-lysine 6-monooxygenase/L-ornithine 5-monooxygenase PF550_01105 IPR036188 FAD/NAD(P)-binding domain superfamily PF550_01105 IPR031043 Putative histamine N-monooxygenase PF550_01135 IPR036412 HAD-like superfamily PF550_01135 IPR023214 HAD superfamily PF550_01135 IPR027256 P-type ATPase, subfamily IB PF550_01135 IPR001757 P-type ATPase PF550_01135 IPR023299 P-type ATPase, cytoplasmic domain N PF550_01135 IPR018303 P-type ATPase, phosphorylation site PF550_01135 IPR008250 P-type ATPase, A domain superfamily PF550_01135 IPR023298 P-type ATPase, transmembrane domain superfamily PF550_01140 IPR004358 Signal transduction histidine kinase-related protein, C-terminal PF550_01140 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain PF550_01140 IPR036890 Histidine kinase/HSP90-like ATPase superfamily PF550_01140 IPR006290 Heavy metal sensor kinase PF550_01140 IPR003660 HAMP domain PF550_01140 IPR003594 Histidine kinase/HSP90-like ATPase PF550_01140 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily PF550_01140 IPR005467 Histidine kinase domain PF550_01145 IPR011006 CheY-like superfamily PF550_01145 IPR001867 OmpR/PhoB-type DNA-binding domain PF550_01145 IPR006291 Transcriptional regulatory protein PcoR, heavy metal response PF550_01145 IPR001789 Signal transduction response regulator, receiver domain PF550_01145 IPR039420 Transcriptional regulatory protein WalR-like PF550_01145 IPR036388 Winged helix-like DNA-binding domain superfamily PF550_01155 IPR001117 Multicopper oxidase, type 1 PF550_01155 IPR019546 Twin-arginine translocation pathway, signal sequence, bacterial/archaeal PF550_01155 IPR006311 Twin-arginine translocation pathway, signal sequence PF550_01155 IPR011706 Multicopper oxidase, type 2 PF550_01155 IPR034282 Copper resistance protein CopA, second cupredoxin domain PF550_01155 IPR034279 Copper resistance protein, third cupredoxin domain PF550_01155 IPR011707 Multicopper oxidase, type 3 PF550_01155 IPR006376 Copper-resistance protein CopA PF550_01155 IPR008972 Cupredoxin PF550_01155 IPR002355 Multicopper oxidase, copper-binding site PF550_01155 IPR034284 Copper resistance protein, first cupredoxin domain PF550_01155 IPR033138 Multicopper oxidases, conserved site PF550_01180 IPR003373 Ferrous iron transport protein B PF550_01180 IPR011640 Ferrous iron transport protein B, C-terminal PF550_01180 IPR030389 FeoB-type guanine nucleotide-binding (G) domain PF550_01180 IPR011642 Nucleoside transporter/FeoB GTPase, Gate domain PF550_01180 IPR027417 P-loop containing nucleoside triphosphate hydrolase PF550_01180 IPR006073 GTP binding domain PF550_01195 IPR009061 Putative DNA-binding domain superfamily PF550_01195 IPR011794 Hg(II)-responsive transcriptional regulator PF550_01195 IPR000551 MerR-type HTH domain PF550_01245 IPR002187 Nitrogen regulatory protein PII PF550_01245 IPR011322 Nitrogen regulatory PII-like, alpha/beta PF550_01245 IPR017918 Nitrogen regulatory protein PII, conserved site PF550_01245 IPR002332 Nitrogen regulatory protein P-II, urydylation site PF550_01245 IPR015867 Nitrogen regulatory protein PII/ATP phosphoribosyltransferase, C-terminal PF550_01250 IPR029020 Ammonium/urea transporter PF550_01250 IPR001905 Ammonium transporter PF550_01250 IPR018047 Ammonium transporter, conserved site PF550_01250 IPR024041 Ammonium transporter AmtB-like domain PF550_01255 IPR005144 ATP-cone domain PF550_01255 IPR003796 Ribonucleotide reductase regulator NrdR-like PF550_01260 IPR004794 Riboflavin biosynthesis protein RibD PF550_01260 IPR002734 Bacterial bifunctional deaminase-reductase, C-terminal PF550_01260 IPR016192 APOBEC/CMP deaminase, zinc-binding PF550_01260 IPR002125 Cytidine and deoxycytidylate deaminase domain PF550_01260 IPR016193 Cytidine deaminase-like PF550_01260 IPR024072 Dihydrofolate reductase-like domain superfamily PF550_01260 IPR011549 Riboflavin-specific deaminase, C-terminal PF550_01270 IPR017938 Riboflavin synthase-like beta-barrel PF550_01270 IPR026017 Lumazine-binding domain PF550_01270 IPR023366 ATP synthase subunit alpha, N-terminal domain-like superfamily PF550_01270 IPR001783 Lumazine-binding protein PF550_01290 IPR011356 Peptidase M17, leucine aminopeptidase/peptidase B PF550_01290 IPR000819 Peptidase M17, leucyl aminopeptidase, C-terminal PF550_01290 IPR023042 Peptidase M17, leucine aminopeptidase PF550_01290 IPR008283 Peptidase M17, leucyl aminopeptidase, N-terminal PF550_01300 IPR030923 LPS export ABC transporter permease LptG PF550_01300 IPR005495 Permease LptG/LptF-related PF550_01305 IPR005995 Phosphoglycerate mutase, 2,3-bisphosphoglycerate-independent PF550_01305 IPR017850 Alkaline-phosphatase-like, core domain superfamily PF550_01305 IPR011258 BPG-independent PGAM, N-terminal PF550_01305 IPR006124 Metalloenzyme PF550_01305 IPR036646 BPG-independent phosphoglycerate mutase, domain B superfamily PF550_01310 IPR001478 PDZ domain PF550_01310 IPR036034 PDZ superfamily PF550_01310 IPR004447 C-terminal-processing peptidase S41A PF550_01310 IPR005151 Tail specific protease PF550_01310 IPR029045 ClpP/crotonase-like domain superfamily PF550_01315 IPR001789 Signal transduction response regulator, receiver domain PF550_01315 IPR002078 RNA polymerase sigma factor 54 interaction domain PF550_01315 IPR025662 Sigma-54 interaction domain, ATP-binding site 1 PF550_01315 IPR025943 Sigma-54 interaction domain, ATP-binding site 2 PF550_01315 IPR025944 Sigma-54 interaction domain, conserved site PF550_01315 IPR027417 P-loop containing nucleoside triphosphate hydrolase PF550_01315 IPR002197 DNA binding HTH domain, Fis-type PF550_01315 IPR009057 Homeobox-like domain superfamily PF550_01315 IPR011006 CheY-like superfamily PF550_01315 IPR003593 AAA+ ATPase domain PF550_01320 IPR004358 Signal transduction histidine kinase-related protein, C-terminal PF550_01320 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily PF550_01320 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain PF550_01320 IPR005467 Histidine kinase domain PF550_01320 IPR036890 Histidine kinase/HSP90-like ATPase superfamily PF550_01320 IPR000014 PAS domain PF550_01320 IPR003594 Histidine kinase/HSP90-like ATPase PF550_01325 IPR001789 Signal transduction response regulator, receiver domain PF550_01325 IPR011006 CheY-like superfamily PF550_01325 IPR016032 Signal transduction response regulator, C-terminal effector PF550_01325 IPR000792 Transcription regulator LuxR, C-terminal PF550_01330 IPR001967 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A, N-terminal PF550_01330 IPR018044 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A PF550_01330 IPR012338 Beta-lactamase/transpeptidase-like PF550_01335 IPR004450 Threonine synthase-like PF550_01335 IPR000634 Serine/threonine dehydratase, pyridoxal-phosphate-binding site PF550_01335 IPR001926 Pyridoxal-phosphate dependent enzyme PF550_01335 IPR036052 Tryptophan synthase beta subunit-like PLP-dependent enzyme PF550_01335 IPR026260 Threonine synthase, bacterial/archaeal PF550_01340 IPR002912 ACT domain PF550_01340 IPR005106 Aspartate/homoserine dehydrogenase, NAD-binding PF550_01340 IPR016204 Homoserine dehydrogenase PF550_01340 IPR001342 Homoserine dehydrogenase, catalytic PF550_01340 IPR036291 NAD(P)-binding domain superfamily PF550_01340 IPR019811 Homoserine dehydrogenase, conserved site PF550_01345 IPR033954 Disulphide bond isomerase, DsbC/G PF550_01345 IPR018950 Disulphide bond isomerase, DsbC/G, N-terminal PF550_01345 IPR009094 Disulphide bond isomerase DsbC/G, N-terminal domain superfamily PF550_01345 IPR012336 Thioredoxin-like fold PF550_01345 IPR036249 Thioredoxin-like superfamily PF550_01345 IPR017937 Thioredoxin, conserved site PF550_01345 IPR013766 Thioredoxin domain PF550_01350 IPR010998 Integrase/recombinase, N-terminal PF550_01350 IPR004107 Integrase, SAM-like, N-terminal PF550_01350 IPR011932 Tyrosine recombinase XerD PF550_01350 IPR002104 Integrase, catalytic domain PF550_01350 IPR023009 Tyrosine recombinase XerC/XerD PF550_01350 IPR011010 DNA breaking-rejoining enzyme, catalytic core PF550_01350 IPR013762 Integrase-like, catalytic domain superfamily PF550_01360 IPR027417 P-loop containing nucleoside triphosphate hydrolase PF550_01360 IPR003373 Ferrous iron transport protein B PF550_01360 IPR011642 Nucleoside transporter/FeoB GTPase, Gate domain PF550_01360 IPR006073 GTP binding domain PF550_01360 IPR011640 Ferrous iron transport protein B, C-terminal PF550_01360 IPR030389 FeoB-type guanine nucleotide-binding (G) domain PF550_01370 IPR036565 Mur-like, catalytic domain superfamily PF550_01370 IPR004101 Mur ligase, C-terminal PF550_01370 IPR036615 Mur ligase, C-terminal domain superfamily PF550_01370 IPR013221 Mur ligase, central PF550_01370 IPR005762 UDP-N-acetylmuramoylalanine-D-glutamate ligase PF550_01375 IPR018365 Cell cycle, FtsW / RodA / SpoVE, conserved site PF550_01375 IPR013437 Probable peptidoglycan glycosyltransferase FtsW PF550_01375 IPR001182 Probable peptidoglycan glycosyltransferase FtsW/RodA PF550_01380 IPR020058 Glutamyl/glutaminyl-tRNA synthetase, class Ib, catalytic domain PF550_01380 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold PF550_01380 IPR022380 Glutamyl-Q tRNA(Asp) synthetase PF550_01380 IPR000924 Glutamyl/glutaminyl-tRNA synthetase PF550_01385 IPR012784 RNA polymerase-binding transcription factor DksA PF550_01385 IPR037187 DksA, N-terminal domain superfamily PF550_01385 IPR020460 Zinc finger, DksA/TraR C4-type, bacteria PF550_01385 IPR000962 Zinc finger, DksA/TraR C4-type PF550_01385 IPR020458 Zinc finger, DksA/TraR C4-type conserved site PF550_01390 IPR004843 Calcineurin-like phosphoesterase domain, ApaH type PF550_01390 IPR026575 3,5-cyclic adenosine monophosphate phosphodiesterase CpdA PF550_01390 IPR029052 Metallo-dependent phosphatase-like PF550_01395 IPR004385 Nucleoside diphosphate pyrophosphatase PF550_01395 IPR015797 NUDIX hydrolase-like domain superfamily PF550_01395 IPR000086 NUDIX hydrolase domain PF550_01400 IPR002817 Phosphomethylpyrimidine synthase ThiC/5-hydroxybenzimidazole synthase BzaA/B PF550_01400 IPR038521 ThiC/Bza superfamily PF550_01400 IPR025747 ThiC-associated domain PF550_01400 IPR037509 Phosphomethylpyrimidine synthase PF550_01415 IPR004779 Carboxylate/Amino Acid/Amine Transporter PF550_01415 IPR000620 EamA domain PF550_01420 IPR003423 Outer membrane efflux protein PF550_01420 IPR010130 Type I secretion outer membrane protein, TolC PF550_01425 IPR028366 Phosphate transport system protein PhoU PF550_01425 IPR038078 PhoU-like domain superfamily PF550_01425 IPR026022 PhoU domain PF550_01430 IPR007457 Fe(II) trafficking protein YggX PF550_01430 IPR036766 Fe(II) trafficking protein YggX superfamily PF550_01435 IPR022761 Fumarate lyase, N-terminal PF550_01435 IPR020557 Fumarate lyase, conserved site PF550_01435 IPR008948 L-Aspartase-like PF550_01435 IPR009049 Argininosuccinate lyase PF550_01435 IPR029419 Argininosuccinate lyase, C-terminal PF550_01435 IPR024083 Fumarase/histidase, N-terminal PF550_01435 IPR000362 Fumarate lyase family PF550_01440 IPR029016 GAF-like domain superfamily PF550_01440 IPR003594 Histidine kinase/HSP90-like ATPase PF550_01440 IPR036890 Histidine kinase/HSP90-like ATPase superfamily PF550_01440 IPR010559 Signal transduction histidine kinase, internal region PF550_01440 IPR011620 Signal transduction histidine kinase, 5TM receptor LytS, transmembrane region PF550_01445 IPR011006 CheY-like superfamily PF550_01445 IPR007492 LytTR DNA-binding domain PF550_01445 IPR001789 Signal transduction response regulator, receiver domain PF550_01450 IPR022418 Porphobilinogen deaminase, C-terminal PF550_01450 IPR000860 Porphobilinogen deaminase PF550_01450 IPR022419 Porphobilinogen deaminase, dipyrromethane cofactor binding site PF550_01450 IPR022417 Porphobilinogen deaminase, N-terminal PF550_01450 IPR036803 Porphobilinogen deaminase, C-terminal domain superfamily PF550_01475 IPR027444 Histone-like protein H-NS, C-terminal domain PF550_01475 IPR037150 Histone-like protein H-NS, C-terminal domain superfamily PF550_01475 IPR001801 Histone-like protein H-NS PF550_01490 IPR001775 GspD/PilQ family PF550_01490 IPR005644 NolW-like PF550_01490 IPR004845 Type II secretion system GspD, conserved site PF550_01490 IPR013356 Type II secretion system GspD PF550_01490 IPR004846 Type II/III secretion system PF550_01490 IPR038591 NolW-like superfamily PF550_01495 IPR000253 Forkhead-associated (FHA) domain PF550_01495 IPR008984 SMAD/FHA domain superfamily PF550_01495 IPR042287 FhaA, N-terminal PF550_01495 IPR022128 Domain of unknown function DUF3662 PF550_01500 IPR037512 Phosphoglycolate phosphatase, prokaryotic PF550_01500 IPR006346 2-phosphoglycolate phosphatase-like, prokaryotic PF550_01500 IPR036412 HAD-like superfamily PF550_01500 IPR006439 HAD hydrolase, subfamily IA PF550_01500 IPR041492 Haloacid dehalogenase-like hydrolase PF550_01500 IPR023214 HAD superfamily PF550_01500 IPR023198 Phosphoglycolate phosphatase-like, domain 2 PF550_01505 IPR019999 Anthranilate synthase component I-like PF550_01505 IPR006805 Anthranilate synthase component I, N-terminal PF550_01505 IPR005256 Anthranilate synthase component I, PabB-like PF550_01505 IPR015890 Chorismate-utilising enzyme, C-terminal PF550_01505 IPR005801 ADC synthase PF550_01530 IPR004160 Translation elongation factor EFTu/EF1A, C-terminal PF550_01530 IPR004541 Translation elongation factor EFTu/EF1A, bacterial/organelle PF550_01530 IPR009000 Translation protein, beta-barrel domain superfamily PF550_01530 IPR000795 Transcription factor, GTP-binding domain PF550_01530 IPR009001 Translation elongation factor EF1A/initiation factor IF2gamma, C-terminal PF550_01530 IPR027417 P-loop containing nucleoside triphosphate hydrolase PF550_01530 IPR041709 Elongation factor Tu (EF-Tu), GTP-binding domain PF550_01530 IPR031157 Tr-type G domain, conserved site PF550_01530 IPR033720 Elongation factor Tu, domain 2 PF550_01530 IPR004161 Translation elongation factor EFTu-like, domain 2 PF550_01530 IPR005225 Small GTP-binding protein domain PF550_01540 IPR005807 SecE subunit of protein translocation complex, bacterial-like PF550_01540 IPR038379 SecE superfamily PF550_01540 IPR001901 Protein translocase complex, SecE/Sec61-gamma subunit PF550_01545 IPR008991 Translation protein SH3-like domain superfamily PF550_01545 IPR015869 Transcription antitermination protein, NusG, bacteria, conserved site PF550_01545 IPR006645 NusG, N-terminal PF550_01545 IPR014722 Ribosomal protein L2, domain 2 PF550_01545 IPR036735 NusG, N-terminal domain superfamily PF550_01545 IPR005824 KOW PF550_01545 IPR001062 Transcription antitermination protein, NusG PF550_01550 IPR020784 Ribosomal protein L11, N-terminal PF550_01550 IPR020785 Ribosomal protein L11, conserved site PF550_01550 IPR036769 Ribosomal protein L11, C-terminal domain superfamily PF550_01550 IPR020783 Ribosomal protein L11, C-terminal PF550_01550 IPR006519 Ribosomal protein L11, bacterial-type PF550_01550 IPR036796 Ribosomal protein L11/L12, N-terminal domain superfamily PF550_01550 IPR000911 Ribosomal protein L11/L12 PF550_01555 IPR005878 Ribosomal protein L1, bacterial-type PF550_01555 IPR002143 Ribosomal protein L1 PF550_01555 IPR023674 Ribosomal protein L1-like PF550_01555 IPR028364 Ribosomal protein L1/ribosomal biogenesis protein PF550_01555 IPR016095 Ribosomal protein L1, 3-layer alpha/beta-sandwich PF550_01555 IPR023673 Ribosomal protein L1, conserved site PF550_01560 IPR022973 Ribosomal protein L10 PF550_01560 IPR002363 Ribosomal protein L10, eubacterial, conserved site PF550_01560 IPR001790 Ribosomal protein L10P PF550_01565 IPR036235 Ribosomal protein L7/L12, oligomerisation domain superfamily PF550_01565 IPR000206 Ribosomal protein L7/L12 PF550_01565 IPR013823 Ribosomal protein L7/L12, C-terminal PF550_01565 IPR014719 Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-like PF550_01565 IPR008932 Ribosomal protein L7/L12, oligomerisation PF550_01570 IPR037034 RNA polymerase Rpb2, domain 2 superfamily PF550_01570 IPR014724 RNA polymerase Rpb2, OB-fold PF550_01570 IPR007641 RNA polymerase Rpb2, domain 7 PF550_01570 IPR007645 RNA polymerase Rpb2, domain 3 PF550_01570 IPR007642 RNA polymerase Rpb2, domain 2 PF550_01570 IPR042107 DNA-directed RNA polymerase, beta subunit, external 1 domain superfamily PF550_01570 IPR007121 RNA polymerase, beta subunit, conserved site PF550_01570 IPR010243 DNA-directed RNA polymerase beta subunit, bacterial-type PF550_01570 IPR037033 DNA-directed RNA polymerase, subunit 2, hybrid-binding domain superfamily PF550_01570 IPR007120 DNA-directed RNA polymerase, subunit 2, hybrid-binding domain PF550_01570 IPR015712 DNA-directed RNA polymerase, subunit 2 PF550_01570 IPR019462 DNA-directed RNA polymerase, beta subunit, external 1 domain PF550_01570 IPR007644 RNA polymerase, beta subunit, protrusion PF550_01575 IPR038120 RNA polymerase Rpb1, funnel domain superfamily PF550_01575 IPR007081 RNA polymerase Rpb1, domain 5 PF550_01575 IPR007083 RNA polymerase Rpb1, domain 4 PF550_01575 IPR006592 RNA polymerase, N-terminal PF550_01575 IPR007066 RNA polymerase Rpb1, domain 3 PF550_01575 IPR007080 RNA polymerase Rpb1, domain 1 PF550_01575 IPR000722 RNA polymerase, alpha subunit PF550_01575 IPR042102 RNA polymerase Rpb1, domain 3 superfamily PF550_01575 IPR012754 DNA-directed RNA polymerase, subunit beta-prime PF550_01600 IPR032813 Putative Na+/H+ antiporter, N-terminal PF550_01600 IPR018461 Na+/H+ antiporter, NhaC-like, C-terminal PF550_01615 IPR036890 Histidine kinase/HSP90-like ATPase superfamily PF550_01615 IPR037196 HSP90, C-terminal domain PF550_01615 IPR001404 Heat shock protein Hsp90 family PF550_01615 IPR020575 Heat shock protein Hsp90, N-terminal PF550_01615 IPR020568 Ribosomal protein S5 domain 2-type fold PF550_01615 IPR003594 Histidine kinase/HSP90-like ATPase PF550_01630 IPR001853 DSBA-like thioredoxin domain PF550_01630 IPR036249 Thioredoxin-like superfamily PF550_01640 IPR009061 Putative DNA-binding domain superfamily PF550_01640 IPR000551 MerR-type HTH domain PF550_01660 IPR020616 Thiolase, N-terminal PF550_01660 IPR020617 Thiolase, C-terminal PF550_01660 IPR020613 Thiolase, conserved site PF550_01660 IPR020615 Thiolase, acyl-enzyme intermediate active site PF550_01660 IPR016039 Thiolase-like PF550_01660 IPR002155 Thiolase PF550_01660 IPR012805 Acetyl-CoA C-acyltransferase FadA PF550_01660 IPR020610 Thiolase, active site PF550_01665 IPR036291 NAD(P)-binding domain superfamily PF550_01665 IPR012799 Fatty oxidation complex, alpha subunit FadB PF550_01665 IPR001753 Enoyl-CoA hydratase/isomerase PF550_01665 IPR018376 Enoyl-CoA hydratase/isomerase, conserved site PF550_01665 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily PF550_01665 IPR006108 3-hydroxyacyl-CoA dehydrogenase, C-terminal PF550_01665 IPR006176 3-hydroxyacyl-CoA dehydrogenase, NAD binding PF550_01665 IPR006180 3-hydroxyacyl-CoA dehydrogenase, conserved site PF550_01665 IPR029045 ClpP/crotonase-like domain superfamily PF550_01680 IPR038476 UvrC homology region 2 superfamily PF550_01680 IPR001162 UvrC family homology region PF550_01680 IPR036876 UVR domain superfamily PF550_01680 IPR004791 UvrABC system, subunit C PF550_01680 IPR010994 RuvA domain 2-like PF550_01680 IPR003583 Helix-hairpin-helix DNA-binding motif, class 1 PF550_01680 IPR035901 GIY-YIG endonuclease superfamily PF550_01680 IPR000305 GIY-YIG endonuclease PF550_01680 IPR001943 UVR domain PF550_01690 IPR000462 CDP-alcohol phosphatidyltransferase PF550_01690 IPR004570 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase PF550_01690 IPR023762 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase, bacterial PF550_01695 IPR035451 Ada-like domain superfamily PF550_01695 IPR004026 Ada DNA repair, metal-binding PF550_01695 IPR016221 Bifunctional regulatory protein Ada PF550_01695 IPR009057 Homeobox-like domain superfamily PF550_01695 IPR018060 DNA binding HTH domain, AraC-type PF550_01695 IPR018062 HTH domain AraC-type, conserved site PF550_01695 IPR001497 Methylated-DNA-[protein]-cysteine S-methyltransferase, active site PF550_01695 IPR014048 Methylated-DNA-[protein]-cysteine S-methyltransferase, DNA binding PF550_01695 IPR036217 Methylated DNA-protein cysteine methyltransferase, DNA binding domain PF550_01695 IPR008332 Methylguanine DNA methyltransferase, ribonuclease-like domain PF550_01695 IPR036631 Methylated DNA-protein cysteine methyltransferase domain superfamily PF550_01695 IPR036388 Winged helix-like DNA-binding domain superfamily PF550_01720 IPR022871 Para-hydroxybenzoic acid efflux pump, subunit AaeA PF550_01720 IPR039562 Membrane fusion protein, biotin-lipoyl like domain PF550_01720 IPR006143 RND efflux pump, membrane fusion protein PF550_01725 IPR012337 Ribonuclease H-like superfamily PF550_01725 IPR005227 Putative pre-16S rRNA nuclease PF550_01725 IPR006641 YqgF/RNase H-like domain PF550_01725 IPR037027 YqgF/RNase H-like domain superfamily PF550_01730 IPR003774 Protein of unknown function UPF0301 PF550_01735 IPR004604 DNA recombination/repair protein RecN PF550_01735 IPR027417 P-loop containing nucleoside triphosphate hydrolase PF550_01735 IPR003395 RecF/RecN/SMC, N-terminal PF550_01745 IPR009664 Pyrimidine/purine nucleoside phosphorylase PF550_01745 IPR011051 RmlC-like cupin domain superfamily PF550_01745 IPR014710 RmlC-like jelly roll fold PF550_01750 IPR024915 23S rRNA (guanosine-2-O-)-methyltransferase RlmB PF550_01750 IPR029028 Alpha/beta knot methyltransferases PF550_01750 IPR029064 50S ribosomal protein L30e-like PF550_01750 IPR004441 RNA methyltransferase TrmH family PF550_01750 IPR013123 RNA 2-O ribose methyltransferase, substrate binding PF550_01750 IPR029026 tRNA (guanine-N1-)-methyltransferase, N-terminal PF550_01750 IPR001537 tRNA/rRNA methyltransferase, SpoU type PF550_01760 IPR027417 P-loop containing nucleoside triphosphate hydrolase PF550_01760 IPR001977 Dephospho-CoA kinase PF550_01765 IPR010627 Peptidase A24A, N-terminal PF550_01765 IPR014032 Peptidase A24A, prepilin type IV, bacterial PF550_01765 IPR000045 Prepilin type IV endopeptidase, peptidase domain PF550_01770 IPR042094 Type II secretion system F domain superfamily PF550_01770 IPR003004 GspF/PilC family PF550_01770 IPR001992 Type II secretion system conserved site PF550_01770 IPR018076 Type II secretion system F domain PF550_01775 IPR042181 Type II secretion system, protein E, N-terminal PF550_01775 IPR013374 ATPase, type IV, pilus assembly, PilB PF550_01775 IPR037257 General secretory system II, protein E, N-terminal superfamily PF550_01775 IPR001482 Type II/IV secretion system protein PF550_01775 IPR007831 General secretory system II, protein E, N-terminal PF550_01775 IPR027417 P-loop containing nucleoside triphosphate hydrolase PF550_01780 IPR013785 Aldolase-type TIM barrel PF550_01780 IPR035990 Triosephosphate isomerase superfamily PF550_01780 IPR022896 Triosephosphate isomerase, bacterial/eukaryotic PF550_01780 IPR000652 Triosephosphate isomerase PF550_01780 IPR020861 Triosephosphate isomerase, active site PF550_01785 IPR004692 Preprotein translocase SecG subunit PF550_01805 IPR035956 RimP, N-terminal domain superfamily PF550_01805 IPR036847 Ribosome maturation factor RimP, C-terminal domain superfamily PF550_01805 IPR028998 Ribosome maturation factor RimP, C-terminal PF550_01805 IPR003728 Ribosome maturation factor RimP PF550_01805 IPR028989 Ribosome maturation factor RimP, N-terminal PF550_01810 IPR003029 S1 domain PF550_01810 IPR010213 Transcription termination factor NusA PF550_01810 IPR013735 Transcription factor NusA, N-terminal PF550_01810 IPR022967 RNA-binding domain, S1 PF550_01810 IPR010214 Transcription termination factor NusA, C-terminal duplication PF550_01810 IPR030842 Transcription termination/antitermination protein NusA, bacterial PF550_01810 IPR012340 Nucleic acid-binding, OB-fold PF550_01810 IPR009019 K homology domain superfamily, prokaryotic type PF550_01810 IPR025249 KH domain, NusA-like PF550_01810 IPR010995 DNA repair Rad51/transcription factor NusA, alpha-helical PF550_01810 IPR036555 NusA, N-terminal domain superfamily PF550_01810 IPR015946 K homology domain-like, alpha/beta PF550_01815 IPR009000 Translation protein, beta-barrel domain superfamily PF550_01815 IPR036925 Translation initiation factor IF-2, domain 3 superfamily PF550_01815 IPR023115 Translation initiation factor IF- 2, domain 3 PF550_01815 IPR015760 Translation initiation factor IF- 2 PF550_01815 IPR005225 Small GTP-binding protein domain PF550_01815 IPR000795 Transcription factor, GTP-binding domain PF550_01815 IPR027417 P-loop containing nucleoside triphosphate hydrolase PF550_01815 IPR006847 Translation initiation factor IF-2, N-terminal PF550_01815 IPR013575 Initiation factor 2 associated domain, bacterial PF550_01815 IPR009061 Putative DNA-binding domain superfamily PF550_01815 IPR000178 Translation initiation factor aIF-2, bacterial-like PF550_01820 IPR015946 K homology domain-like, alpha/beta PF550_01820 IPR000238 Ribosome-binding factor A PF550_01820 IPR023799 Ribosome-binding factor A domain superfamily PF550_01825 IPR005133 Na+/H+ antiporter subunit G PF550_01830 IPR007208 Na(+)/H(+) antiporter subunit F-like PF550_01835 IPR002758 Na+/H+ antiporter subunit E PF550_01840 IPR004775 Na(+)/H(+) antiporter subunit D1 PF550_01840 IPR001750 NADH:quinone oxidoreductase/Mrp antiporter, membrane subunit PF550_01845 IPR039428 NADH-ubiquinone oxidoreductase chain 4L/Mnh complex subunit C1-like PF550_01845 IPR006673 Mnh complex subunit C1 PF550_01850 IPR005281 Monovalent cation:proton antiporter, subunit B PF550_01850 IPR025383 Domain of unknown function DUF4040 PF550_01850 IPR007182 Na+/H+ antiporter MnhB subunit-related protein PF550_01850 IPR005663 Monovalent cation proton antiporter subunit A PF550_01850 IPR001750 NADH:quinone oxidoreductase/Mrp antiporter, membrane subunit PF550_01850 IPR001516 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminal PF550_01865 IPR026660 Phosphoribosyl-AMP cyclohydrolase PF550_01865 IPR002496 Phosphoribosyl-AMP cyclohydrolase domain PF550_01865 IPR038019 Phosphoribosyl-AMP cyclohydrolase domain superfamily PF550_01870 IPR002938 FAD-binding domain PF550_01870 IPR036188 FAD/NAD(P)-binding domain superfamily PF550_01875 IPR010232 Probable protein kinase UbiB PF550_01875 IPR004147 UbiB domain PF550_01875 IPR011009 Protein kinase-like domain superfamily PF550_01885 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase PF550_01885 IPR004033 UbiE/COQ5 methyltransferase PF550_01885 IPR023576 UbiE/COQ5 methyltransferase, conserved site PF550_01895 IPR027417 P-loop containing nucleoside triphosphate hydrolase PF550_01895 IPR022488 Polyphosphate kinase-2-related PF550_01905 IPR011335 Restriction endonuclease type II-like PF550_01905 IPR027417 P-loop containing nucleoside triphosphate hydrolase PF550_01905 IPR006697 RecBCD enzyme subunit RecC PF550_01905 IPR013986 DExx box DNA helicase domain superfamily PF550_01905 IPR041500 RecC, C-terminal PF550_01910 IPR011335 Restriction endonuclease type II-like PF550_01910 IPR034739 UvrD/AddA helicase, N-terminal PF550_01910 IPR004586 RecBCD enzyme subunit RecB PF550_01910 IPR014016 UvrD-like helicase, ATP-binding domain PF550_01910 IPR027417 P-loop containing nucleoside triphosphate hydrolase PF550_01910 IPR014017 UvrD-like DNA helicase, C-terminal PF550_01910 IPR011604 Exonuclease, phage-type/RecB, C-terminal PF550_01910 IPR038726 PD-(D/E)XK endonuclease-like domain, AddAB-type PF550_01910 IPR000212 DNA helicase, UvrD/REP type PF550_01915 IPR003593 AAA+ ATPase domain PF550_01915 IPR027417 P-loop containing nucleoside triphosphate hydrolase PF550_01915 IPR006344 RecBCD enzyme subunit RecD PF550_01915 IPR041851 RecBCD enzyme subunit RecD, N-terminal domain PF550_01915 IPR027785 UvrD-like helicase C-terminal domain PF550_01920 IPR001466 Beta-lactamase-related PF550_01920 IPR012338 Beta-lactamase/transpeptidase-like PF550_01925 IPR000589 Ribosomal protein S15 PF550_01925 IPR005290 Ribosomal protein S15, bacterial-type PF550_01925 IPR009068 S15/NS1, RNA-binding PF550_01930 IPR015848 Polyribonucleotide nucleotidyltransferase, RNA-binding domain PF550_01930 IPR003029 S1 domain PF550_01930 IPR022967 RNA-binding domain, S1 PF550_01930 IPR020568 Ribosomal protein S5 domain 2-type fold PF550_01930 IPR036456 Polyribonucleotide nucleotidyltransferase, RNA-binding domain superfamily PF550_01930 IPR027408 PNPase/RNase PH domain superfamily PF550_01930 IPR015847 Exoribonuclease, phosphorolytic domain 2 PF550_01930 IPR012340 Nucleic acid-binding, OB-fold PF550_01930 IPR036612 K Homology domain, type 1 superfamily PF550_01930 IPR004088 K Homology domain, type 1 PF550_01930 IPR004087 K Homology domain PF550_01930 IPR036345 Exoribonuclease, PH domain 2 superfamily PF550_01930 IPR001247 Exoribonuclease, phosphorolytic domain 1 PF550_01930 IPR012162 Polyribonucleotide nucleotidyltransferase PF550_01935 IPR004488 Magnesium/cobalt transport protein CorA PF550_01935 IPR002523 Mg2+ transporter protein, CorA-like/Zinc transport protein ZntB PF550_01940 IPR022835 Chaperone modulatory protein CbpM PF550_01945 IPR036869 Chaperone J-domain superfamily PF550_01945 IPR008971 HSP40/DnaJ peptide-binding PF550_01945 IPR001623 DnaJ domain PF550_01945 IPR002939 Chaperone DnaJ, C-terminal PF550_01945 IPR023859 DNA-binding protein, curved-DNA PF550_01945 IPR018253 DnaJ domain, conserved site PF550_01955 IPR000397 Heat shock protein Hsp33 PF550_01955 IPR016154 Heat shock protein Hsp33, C-terminal PF550_01955 IPR016153 Heat shock protein Hsp33, N-terminal PF550_01955 IPR023212 Heat shock protein Hsp33, helix hairpin bin domain superfamily PF550_01960 IPR006153 Cation/H+ exchanger PF550_01960 IPR004771 K+/H+ exchanger PF550_01960 IPR020884 Glutathione-regulated potassium-efflux system protein KefB PF550_01960 IPR038770 Sodium/solute symporter superfamily PF550_01960 IPR003148 Regulator of K+ conductance, N-terminal PF550_01960 IPR036291 NAD(P)-binding domain superfamily PF550_01965 IPR014001 Helicase superfamily 1/2, ATP-binding domain PF550_01965 IPR011545 DEAD/DEAH box helicase domain PF550_01965 IPR040498 PriA DNA helicase, Cys-rich region (CRR) domain PF550_01965 IPR041236 Primosomal protein N, C-terminal domain PF550_01965 IPR027417 P-loop containing nucleoside triphosphate hydrolase PF550_01965 IPR041222 Primosomal protein N', 3' DNA-binding domain PF550_01965 IPR005259 Primosomal protein N' PF550_01965 IPR001650 Helicase, C-terminal PF550_01965 IPR042115 Primosomal protein N', 3' DNA-binding domain superfamily PF550_01970 IPR003004 GspF/PilC family PF550_01970 IPR011850 General secretion pathway protein F PF550_01970 IPR001992 Type II secretion system conserved site PF550_01970 IPR018076 Type II secretion system F domain PF550_01970 IPR042094 Type II secretion system F domain superfamily PF550_01975 IPR010054 General secretion pathway protein G PF550_01975 IPR013545 Type II secretion system protein G PF550_01975 IPR000983 Bacterial general secretion pathway protein G-type pilin PF550_01975 IPR012902 Prokaryotic N-terminal methylation site PF550_01985 IPR008231 Probable chaperone CsaA PF550_01985 IPR012340 Nucleic acid-binding, OB-fold PF550_01985 IPR002547 tRNA-binding domain PF550_01990 IPR004563 Apolipoprotein N-acyltransferase PF550_01990 IPR003010 Carbon-nitrogen hydrolase PF550_01990 IPR036526 Carbon-nitrogen hydrolase superfamily PF550_01995 IPR005170 Transporter-associated domain PF550_01995 IPR000644 CBS domain PF550_01995 IPR036318 FAD-binding, type PCMH-like superfamily PF550_01995 IPR016169 FAD-binding, type PCMH, subdomain 2 PF550_02000 IPR022931 Sulfur carrier protein TusA PF550_02000 IPR001455 TusA-like domain PF550_02000 IPR036868 TusA-like domain superfamily PF550_02010 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain PF550_02010 IPR040156 Electron transfer flavoprotein-ubiquinone oxidoreductase PF550_02010 IPR036188 FAD/NAD(P)-binding domain superfamily PF550_02020 IPR015942 Asp/Glu/hydantoin racemase PF550_02020 IPR001920 Asp/Glu racemase PF550_02020 IPR018187 Asp/Glu racemase, active site 1 PF550_02020 IPR033134 Asp/Glu racemase, active site 2 PF550_02020 IPR004391 Glutamate racemase PF550_02030 IPR033659 Ferrochelatase, N-terminal PF550_02030 IPR019772 Ferrochelatase, active site PF550_02030 IPR001015 Ferrochelatase PF550_02030 IPR033644 Ferrochelatase, C-terminal PF550_02035 IPR001279 Metallo-beta-lactamase PF550_02035 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like PF550_02040 IPR005584 DNA gyrase inhibitor YacG PF550_02040 IPR013088 Zinc finger, NHR/GATA-type PF550_02050 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain PF550_02050 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site PF550_02050 IPR028261 Dihydroprymidine dehydrogenase domain II PF550_02050 IPR036188 FAD/NAD(P)-binding domain superfamily PF550_02050 IPR023753 FAD/NAD(P)-binding domain PF550_02050 IPR006006 Glutamate synthase, NADH/NADPH, small subunit 2 PF550_02050 IPR009051 Alpha-helical ferredoxin PF550_02060 IPR003691 Putative fluoride ion transporter CrcB PF550_02075 IPR009057 Homeobox-like domain superfamily PF550_02085 IPR039552 Transposase IS66, C-terminal PF550_02085 IPR004291 Transposase, IS66 PF550_02085 IPR024463 Transposase TnpC, homeodomain PF550_02085 IPR024474 Zinc-finger binding domain of transposase IS66 PF550_02095 IPR024474 Zinc-finger binding domain of transposase IS66 PF550_02095 IPR024463 Transposase TnpC, homeodomain PF550_02095 IPR004291 Transposase, IS66 PF550_02095 IPR039552 Transposase IS66, C-terminal PF550_02105 IPR009057 Homeobox-like domain superfamily PF550_02115 IPR011009 Protein kinase-like domain superfamily PF550_02115 IPR000719 Protein kinase domain PF550_02115 IPR004147 UbiB domain PF550_02120 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily PF550_02120 IPR037069 Acyl-CoA dehydrogenase/oxidase, N-terminal domain superfamily PF550_02120 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal PF550_02120 IPR036250 Acyl-CoA dehydrogenase-like, C-terminal PF550_02120 IPR013107 Acyl-CoA dehydrogenase, C-terminal domain PF550_02125 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily PF550_02125 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal PF550_02125 IPR013107 Acyl-CoA dehydrogenase, C-terminal domain PF550_02125 IPR006091 Acyl-CoA oxidase/dehydrogenase, central domain PF550_02125 IPR036250 Acyl-CoA dehydrogenase-like, C-terminal PF550_02125 IPR037069 Acyl-CoA dehydrogenase/oxidase, N-terminal domain superfamily PF550_02130 IPR002528 Multi antimicrobial extrusion protein PF550_02140 IPR004559 Heme chaperone HemW-like PF550_02140 IPR023404 Radical SAM, alpha/beta horseshoe PF550_02140 IPR007197 Radical SAM PF550_02140 IPR034505 Anaerobic coproporphyrinogen-III oxidase PF550_02140 IPR006638 Elp3/MiaB/NifB PF550_02140 IPR010723 HemN, C-terminal PF550_02145 IPR002347 Short-chain dehydrogenase/reductase SDR PF550_02145 IPR036291 NAD(P)-binding domain superfamily PF550_02145 IPR020904 Short-chain dehydrogenase/reductase, conserved site PF550_02145 IPR011284 3-oxoacyl-(acyl-carrier-protein) reductase PF550_02150 IPR005119 LysR, substrate-binding PF550_02150 IPR000847 Transcription regulator HTH, LysR PF550_02150 IPR036388 Winged helix-like DNA-binding domain superfamily PF550_02150 IPR036390 Winged helix DNA-binding domain superfamily PF550_02165 IPR025110 AMP-binding enzyme, C-terminal domain PF550_02165 IPR020845 AMP-binding, conserved site PF550_02165 IPR000873 AMP-dependent synthetase/ligase PF550_02165 IPR030310 Long-chain-fatty-acid--CoA ligase FadD17 PF550_02165 IPR042099 AMP-dependent synthetase-like superfamily PF550_02170 IPR012340 Nucleic acid-binding, OB-fold PF550_02170 IPR021968 Polyribonucleotide phosphorylase C-terminal PF550_02170 IPR003029 S1 domain PF550_02170 IPR022967 RNA-binding domain, S1 PF550_02170 IPR004659 Ribonuclease E/G PF550_02170 IPR028878 Ribonuclease E PF550_02170 IPR019307 RNA-binding protein AU-1/Ribonuclease E/G PF550_02175 IPR020103 Pseudouridine synthase, catalytic domain superfamily PF550_02175 IPR006225 Pseudouridine synthase, RluC/RluD PF550_02175 IPR036986 RNA-binding S4 domain superfamily PF550_02175 IPR006145 Pseudouridine synthase, RsuA/RluA PF550_02175 IPR002942 RNA-binding S4 domain PF550_02175 IPR006224 Pseudouridine synthase, RluC/RluD, conserved site PF550_02180 IPR023733 Pyrophosphatase PpaX PF550_02180 IPR023198 Phosphoglycolate phosphatase-like, domain 2 PF550_02180 IPR041492 Haloacid dehalogenase-like hydrolase PF550_02180 IPR006439 HAD hydrolase, subfamily IA PF550_02180 IPR036412 HAD-like superfamily PF550_02180 IPR023214 HAD superfamily PF550_02185 IPR001034 DeoR-type HTH domain PF550_02185 IPR013196 Helix-turn-helix, type 11 PF550_02185 IPR036388 Winged helix-like DNA-binding domain superfamily PF550_02185 IPR036390 Winged helix DNA-binding domain superfamily PF550_02185 IPR026881 WYL domain PF550_02185 IPR028349 Protein PafC PF550_02190 IPR010987 Glutathione S-transferase, C-terminal-like PF550_02190 IPR036282 Glutathione S-transferase, C-terminal domain superfamily PF550_02190 IPR040079 Glutathione Transferase family PF550_02190 IPR004045 Glutathione S-transferase, N-terminal PF550_02190 IPR036249 Thioredoxin-like superfamily PF550_02200 IPR036388 Winged helix-like DNA-binding domain superfamily PF550_02200 IPR005119 LysR, substrate-binding PF550_02200 IPR000847 Transcription regulator HTH, LysR PF550_02200 IPR036390 Winged helix DNA-binding domain superfamily PF550_02205 IPR001279 Metallo-beta-lactamase PF550_02205 IPR024884 N-acyl-phosphatidylethanolamine-hydrolysing phospholipase D PF550_02205 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like PF550_02210 IPR010255 Haem peroxidase superfamily PF550_02210 IPR019794 Peroxidase, active site PF550_02210 IPR000763 Catalase-peroxidase haem PF550_02210 IPR002016 Haem peroxidase PF550_02215 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain superfamily PF550_02215 IPR008279 PEP-utilising enzyme, mobile domain PF550_02215 IPR018274 PEP-utilising enzyme, active site PF550_02215 IPR000121 PEP-utilising enzyme, C-terminal PF550_02215 IPR023151 PEP-utilising enzyme, conserved site PF550_02215 IPR036637 Phosphohistidine domain superfamily PF550_02215 IPR040442 Pyruvate kinase-like domain superfamily PF550_02215 IPR029016 GAF-like domain superfamily PF550_02215 IPR003018 GAF domain PF550_02215 IPR036618 PtsI, HPr-binding domain superfamily PF550_02215 IPR008731 Phosphotransferase system, enzyme I N-terminal PF550_02215 IPR006318 Phosphotransferase system, enzyme I-like PF550_02220 IPR020084 NUDIX hydrolase, conserved site PF550_02220 IPR000086 NUDIX hydrolase domain PF550_02220 IPR022927 RNA pyrophosphohydrolase RppH PF550_02220 IPR015797 NUDIX hydrolase-like domain superfamily PF550_02220 IPR020476 NUDIX hydrolase PF550_02240 IPR000847 Transcription regulator HTH, LysR PF550_02240 IPR005119 LysR, substrate-binding PF550_02240 IPR036390 Winged helix DNA-binding domain superfamily PF550_02240 IPR036388 Winged helix-like DNA-binding domain superfamily PF550_02250 IPR018136 Aconitase family, 4Fe-4S cluster binding site PF550_02250 IPR004430 3-isopropylmalate dehydratase, large subunit PF550_02250 IPR015931 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha, subdomain 1/3 PF550_02250 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain PF550_02250 IPR036008 Aconitase, iron-sulfur domain PF550_02250 IPR033941 3-Isopropylmalate dehydratase, catalytic domain PF550_02255 IPR004431 3-isopropylmalate dehydratase, small subunit PF550_02255 IPR033940 3-isopropylmalate dehydratase, swivel domain PF550_02255 IPR000573 Aconitase A/isopropylmalate dehydratase small subunit, swivel domain PF550_02255 IPR015928 Aconitase/3-isopropylmalate dehydratase, swivel PF550_02265 IPR024084 Isopropylmalate dehydrogenase-like domain PF550_02265 IPR004429 Isopropylmalate dehydrogenase PF550_02265 IPR019818 Isocitrate/isopropylmalate dehydrogenase, conserved site PF550_02280 IPR022967 RNA-binding domain, S1 PF550_02280 IPR004368 Translation initiation factor IF-1 PF550_02280 IPR006196 RNA-binding domain, S1, IF1 type PF550_02280 IPR012340 Nucleic acid-binding, OB-fold PF550_02290 IPR020095 Pseudouridine synthase I, TruA, C-terminal PF550_02290 IPR020097 Pseudouridine synthase I, TruA, alpha/beta domain PF550_02290 IPR020103 Pseudouridine synthase, catalytic domain superfamily PF550_02290 IPR001406 Pseudouridine synthase I, TruA PF550_02310 IPR000319 Aspartate-semialdehyde dehydrogenase, conserved site PF550_02310 IPR012080 Aspartate-semialdehyde dehydrogenase PF550_02310 IPR011534 Aspartate-semialdehyde dehydrogenase, gamma-type PF550_02310 IPR036291 NAD(P)-binding domain superfamily PF550_02310 IPR012280 Semialdehyde dehydrogenase, dimerisation domain PF550_02310 IPR000534 Semialdehyde dehydrogenase, NAD-binding PF550_02320 IPR034703 Proton/glutamate-aspartate symporter GltP PF550_02320 IPR033380 Glutamate-aspartate symport protein GltP/GltT PF550_02320 IPR001991 Sodium:dicarboxylate symporter PF550_02320 IPR018107 Sodium:dicarboxylate symporter, conserved site PF550_02320 IPR036458 Sodium:dicarboxylate symporter superfamily PF550_02330 IPR011920 Lipid A biosynthesis lauroyl (or palmitoleoyl) acyltransferase PF550_02330 IPR004960 Bacterial lipid A biosynthesis acyltransferase PF550_02335 IPR004778 Homoserine/Threonine efflux protein PF550_02335 IPR001123 Amino acid exporter protein, LeuE-type PF550_02340 IPR003439 ABC transporter-like PF550_02340 IPR003593 AAA+ ATPase domain PF550_02340 IPR037118 Valyl-tRNA synthetase, tRNA-binding arm superfamily PF550_02340 IPR027417 P-loop containing nucleoside triphosphate hydrolase PF550_02340 IPR017871 ABC transporter, conserved site PF550_02340 IPR032524 ABC transporter Uup, C-terminal PF550_02340 IPR032781 ABC-transporter extension domain PF550_02345 IPR007236 SlyX PF550_02350 IPR020843 Polyketide synthase, enoylreductase domain PF550_02350 IPR036291 NAD(P)-binding domain superfamily PF550_02350 IPR013149 Alcohol dehydrogenase, C-terminal PF550_02350 IPR013154 Alcohol dehydrogenase, N-terminal PF550_02350 IPR002364 Quinone oxidoreductase/zeta-crystallin, conserved site PF550_02350 IPR011032 GroES-like superfamily PF550_02350 IPR014182 Alcohol dehydrogenase, zinc-binding type 1 PF550_02355 IPR002577 Helix-turn-helix, HxlR type PF550_02355 IPR036390 Winged helix DNA-binding domain superfamily PF550_02355 IPR036388 Winged helix-like DNA-binding domain superfamily PF550_02365 IPR000380 DNA topoisomerase, type IA PF550_02365 IPR003601 DNA topoisomerase, type IA, domain 2 PF550_02365 IPR013824 DNA topoisomerase, type IA, central region, subdomain 1 PF550_02365 IPR034149 DNA topoisomerase 1, TOPRIM domain PF550_02365 IPR023406 DNA topoisomerase, type IA, active site PF550_02365 IPR013497 DNA topoisomerase, type IA, central PF550_02365 IPR013825 DNA topoisomerase, type IA, central region, subdomain 2 PF550_02365 IPR013826 DNA topoisomerase, type IA, central region, subdomain 3 PF550_02365 IPR023405 DNA topoisomerase, type IA, core domain PF550_02365 IPR003602 DNA topoisomerase, type IA, DNA-binding domain PF550_02365 IPR013498 DNA topoisomerase, type IA, zn finger PF550_02365 IPR005733 DNA topoisomerase I, bacterial-type PF550_02365 IPR013263 DNA topoisomerase I, zinc ribbon-like, bacterial-type PF550_02365 IPR028612 DNA topoisomerase I, type IA PF550_02365 IPR006171 TOPRIM domain PF550_02380 IPR005751 ATP-dependent DNA helicase PcrA PF550_02380 IPR014017 UvrD-like DNA helicase, C-terminal PF550_02380 IPR000212 DNA helicase, UvrD/REP type PF550_02380 IPR027417 P-loop containing nucleoside triphosphate hydrolase PF550_02380 IPR014016 UvrD-like helicase, ATP-binding domain PF550_02380 IPR034739 UvrD/AddA helicase, N-terminal PF550_02380 IPR013986 DExx box DNA helicase domain superfamily PF550_02385 IPR012677 Nucleotide-binding alpha-beta plait domain superfamily PF550_02385 IPR035979 RNA-binding domain superfamily PF550_02385 IPR000504 RNA recognition motif domain PF550_02405 IPR006153 Cation/H+ exchanger PF550_02405 IPR003148 Regulator of K+ conductance, N-terminal PF550_02405 IPR036291 NAD(P)-binding domain superfamily PF550_02405 IPR038770 Sodium/solute symporter superfamily PF550_02405 IPR004771 K+/H+ exchanger PF550_02410 IPR018264 Ribosomal protein L33, conserved site PF550_02410 IPR011332 Zinc-binding ribosomal protein PF550_02410 IPR001705 Ribosomal protein L33 PF550_02410 IPR038584 Ribosomal protein L33 superfamily PF550_02415 IPR034704 L28p-like PF550_02415 IPR026569 Ribosomal protein L28/L24 PF550_02415 IPR037147 Ribosomal protein L28/L24 superfamily PF550_02415 IPR001383 Ribosomal protein L28 PF550_02420 IPR016161 Aldehyde/histidinol dehydrogenase PF550_02420 IPR029510 Aldehyde dehydrogenase, glutamic acid active site PF550_02420 IPR016162 Aldehyde dehydrogenase, N-terminal PF550_02420 IPR015590 Aldehyde dehydrogenase domain PF550_02420 IPR012394 Aldehyde dehydrogenase NAD(P)-dependent PF550_02420 IPR016163 Aldehyde dehydrogenase, C-terminal PF550_02430 IPR004810 Formyltetrahydrofolate deformylase PF550_02430 IPR041729 Formyltetrahydrofolate deformylase, C-terminal hydrolase domain PF550_02430 IPR036477 Formyl transferase, N-terminal domain superfamily PF550_02430 IPR002376 Formyl transferase, N-terminal PF550_02430 IPR002912 ACT domain PF550_02440 IPR002898 MotA/TolQ/ExbB proton channel PF550_02450 IPR002569 Peptide methionine sulphoxide reductase MsrA PF550_02450 IPR036509 Peptide methionine sulphoxide reductase MsrA superfamily PF550_02460 IPR017925 Dihydrofolate reductase conserved site PF550_02460 IPR001796 Dihydrofolate reductase domain PF550_02460 IPR024072 Dihydrofolate reductase-like domain superfamily PF550_02460 IPR012259 Dihydrofolate reductase PF550_02465 IPR020940 Thymidylate synthase, active site PF550_02465 IPR000398 Thymidylate synthase PF550_02465 IPR036926 Thymidylate synthase/dCMP hydroxymethylase superfamily PF550_02465 IPR023451 Thymidylate synthase/dCMP hydroxymethylase domain PF550_02480 IPR001640 Phosphatidylglycerol--prolipoprotein diacylglyceryl transferase Lgt PF550_02500 IPR002033 Sec-independent periplasmic protein translocase TatC PF550_02500 IPR019820 Sec-independent periplasmic protein translocase, conserved site PF550_02505 IPR003369 Sec-independent protein translocase protein TatA/B/E PF550_02505 IPR018448 Twin-arginine translocation protein TatB PF550_02510 IPR006312 Sec-independent protein translocase protein TatA/E PF550_02510 IPR003369 Sec-independent protein translocase protein TatA/B/E PF550_02520 IPR020922 dITP/XTP pyrophosphatase PF550_02520 IPR002637 Ham1-like protein PF550_02520 IPR029001 Inosine triphosphate pyrophosphatase-like PF550_02530 IPR008220 Homoserine/serine acetyltransferase MetX-like PF550_02530 IPR010743 Methionine biosynthesis MetW PF550_02530 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase PF550_02530 IPR029058 Alpha/Beta hydrolase fold PF550_02530 IPR000073 Alpha/beta hydrolase fold-1 PF550_02535 IPR029058 Alpha/Beta hydrolase fold PF550_02535 IPR000073 Alpha/beta hydrolase fold-1 PF550_02535 IPR008220 Homoserine/serine acetyltransferase MetX-like PF550_02540 IPR000891 Pyruvate carboxyltransferase PF550_02540 IPR036230 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain superfamily PF550_02540 IPR039371 LeuA, N-terminal catalytic TIM barrel domain PF550_02540 IPR013785 Aldolase-type TIM barrel PF550_02540 IPR002034 Alpha-isopropylmalate/homocitrate synthase, conserved site PF550_02540 IPR013709 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain PF550_02540 IPR005668 2-isopropylmalate synthase PF550_02545 IPR005123 Oxoglutarate/iron-dependent dioxygenase PF550_02545 IPR041097 PKHD-type hydroxylase C-terminal domain PF550_02545 IPR023550 PKHD-type hydroxylase PF550_02545 IPR006620 Prolyl 4-hydroxylase, alpha subunit PF550_02550 IPR037066 TonB-dependent receptor, plug domain superfamily PF550_02550 IPR030148 Catecholate siderophore receptor Fiu PF550_02550 IPR010105 TonB-dependent siderophore receptor PF550_02550 IPR036942 TonB-dependent receptor-like, beta-barrel domain superfamily PF550_02550 IPR000531 TonB-dependent receptor-like, beta-barrel PF550_02550 IPR039423 TonB-dependent receptor-like PF550_02550 IPR012910 TonB-dependent receptor, plug domain PF550_02555 IPR005215 Trigger factor PF550_02555 IPR008880 Trigger factor, C-terminal PF550_02555 IPR037041 Trigger factor, C-terminal domain superfamily PF550_02555 IPR008881 Trigger factor, ribosome-binding, bacterial PF550_02555 IPR036611 Trigger factor ribosome-binding domain superfamily PF550_02555 IPR027304 Trigger factor/SurA domain superfamily PF550_02555 IPR001179 FKBP-type peptidyl-prolyl cis-trans isomerase domain PF550_02560 IPR001907 ATP-dependent Clp protease proteolytic subunit PF550_02560 IPR029045 ClpP/crotonase-like domain superfamily PF550_02560 IPR023562 Clp protease proteolytic subunit /Translocation-enhancing protein TepA PF550_02560 IPR033135 ClpP, histidine active site PF550_02560 IPR018215 ClpP, Ser active site PF550_02565 IPR038366 Zinc finger, ClpX C4-type superfamily PF550_02565 IPR010603 Zinc finger, ClpX C4-type PF550_02565 IPR027417 P-loop containing nucleoside triphosphate hydrolase PF550_02565 IPR019489 Clp ATPase, C-terminal PF550_02565 IPR003959 ATPase, AAA-type, core PF550_02565 IPR003593 AAA+ ATPase domain PF550_02565 IPR004487 Clp protease, ATP-binding subunit ClpX PF550_02580 IPR004646 Fe-S hydro-lyase, tartrate dehydratase alpha-type, catalytic domain PF550_02580 IPR004647 Fe-S hydro-lyase, tartrate dehydratase beta-type, catalytic domain PF550_02580 IPR036660 Fe-S hydro-lyase, tartrate dehydratase beta-type, catalytic domain superfamily PF550_02580 IPR011167 Iron-dependent fumarate hydratase PF550_02580 IPR020557 Fumarate lyase, conserved site PF550_02585 IPR002505 Phosphate acetyl/butaryl transferase PF550_02585 IPR028979 HPr(Ser) kinase/phosphorylase-like, N-terminal domain superfamily PF550_02585 IPR042112 Phosphate acetyltransferase, domain 2 PF550_02585 IPR004614 Phosphate acetyltransferase PF550_02585 IPR027417 P-loop containing nucleoside triphosphate hydrolase PF550_02585 IPR016475 Phosphate acetyltransferase, bacteria PF550_02585 IPR010766 DRTGG PF550_02585 IPR042113 Phosphate acetyltransferase, domain 1 PF550_02590 IPR004372 Acetate/propionate kinase PF550_02590 IPR000890 Aliphatic acid kinase, short-chain PF550_02590 IPR023865 Aliphatic acid kinase, short-chain, conserved site PF550_02595 IPR004786 6-phosphogluconate dehydratase PF550_02595 IPR042096 Dihydroxy-acid dehydratase, C-terminal PF550_02595 IPR000581 Dihydroxy-acid/6-phosphogluconate dehydratase PF550_02595 IPR020558 Dihydroxy-acid/6-phosphogluconate dehydratase, conserved site PF550_02595 IPR037237 IlvD/EDD, N-terminal domain PF550_02600 IPR031338 KDPG/KHG aldolase, active site 2 PF550_02600 IPR000887 KDPG/KHG aldolase PF550_02600 IPR013785 Aldolase-type TIM barrel PF550_02600 IPR031337 KDPG/KHG aldolase, active site 1 PF550_02605 IPR003474 Gluconate transporter PF550_02610 IPR027417 P-loop containing nucleoside triphosphate hydrolase PF550_02610 IPR031322 Shikimate kinase/gluconokinase PF550_02610 IPR006001 Carbohydrate kinase, thermoresistant glucokinase PF550_02615 IPR016162 Aldehyde dehydrogenase, N-terminal PF550_02615 IPR015590 Aldehyde dehydrogenase domain PF550_02615 IPR016163 Aldehyde dehydrogenase, C-terminal PF550_02615 IPR016160 Aldehyde dehydrogenase, cysteine active site PF550_02615 IPR016161 Aldehyde/histidinol dehydrogenase PF550_02620 IPR016161 Aldehyde/histidinol dehydrogenase PF550_02620 IPR016163 Aldehyde dehydrogenase, C-terminal PF550_02620 IPR016162 Aldehyde dehydrogenase, N-terminal PF550_02620 IPR015590 Aldehyde dehydrogenase domain PF550_02620 IPR020593 Gamma-glutamyl phosphate reductase GPR, conserved site PF550_02620 IPR012134 Glutamate-5-semialdehyde dehydrogenase PF550_02620 IPR000965 GPR domain PF550_02625 IPR029058 Alpha/Beta hydrolase fold PF550_02625 IPR000073 Alpha/beta hydrolase fold-1 PF550_02625 IPR000639 Epoxide hydrolase-like PF550_02625 IPR023791 2-hydroxy-6-oxononadienedioate/2-hydroxy-6-oxononatrienedioate hydrolase PF550_02635 IPR017853 Glycoside hydrolase superfamily PF550_02635 IPR001764 Glycoside hydrolase, family 3, N-terminal PF550_02635 IPR019800 Glycoside hydrolase, family 3, active site PF550_02635 IPR036962 Glycoside hydrolase, family 3, N-terminal domain superfamily PF550_02635 IPR022956 Beta-hexosaminidase, bacterial PF550_02640 IPR029045 ClpP/crotonase-like domain superfamily PF550_02640 IPR001478 PDZ domain PF550_02640 IPR036034 PDZ superfamily PF550_02640 IPR004447 C-terminal-processing peptidase S41A PF550_02640 IPR005151 Tail specific protease PF550_02640 IPR020992 Tail specific protease, C-terminal PF550_02640 IPR040573 Tail specific protease, N-terminal domain PF550_02645 IPR028098 Glycosyltransferase subfamily 4-like, N-terminal domain PF550_02645 IPR001296 Glycosyl transferase, family 1 PF550_02650 IPR000326 Phosphatidic acid phosphatase type 2/haloperoxidase PF550_02650 IPR036938 Phosphatidic acid phosphatase type 2/haloperoxidase superfamily PF550_02655 IPR007479 ISC system FeS cluster assembly, IscX PF550_02655 IPR036762 IscX-like superfamily PF550_02660 IPR023005 Nucleoside diphosphate kinase, active site PF550_02660 IPR036850 Nucleoside diphosphate kinase-like domain superfamily PF550_02660 IPR001564 Nucleoside diphosphate kinase PF550_02660 IPR034907 Nucleoside diphosphate kinase-like domain PF550_02665 IPR004383 Ribosomal RNA large subunit methyltransferase RlmN/Cfr PF550_02665 IPR007197 Radical SAM PF550_02665 IPR040072 Methyltransferase (Class A) PF550_02665 IPR013785 Aldolase-type TIM barrel PF550_02665 IPR027492 Dual-specificity RNA methyltransferase RlmN PF550_02670 IPR013360 Pilus biogenesis/stability type IV, PilW PF550_02670 IPR013026 Tetratricopeptide repeat-containing domain PF550_02670 IPR019734 Tetratricopeptide repeat PF550_02670 IPR011990 Tetratricopeptide-like helical domain superfamily PF550_02675 IPR001387 Cro/C1-type helix-turn-helix domain PF550_02675 IPR025194 Domain of unknown function DUF4115 PF550_02675 IPR010982 Lambda repressor-like, DNA-binding domain superfamily PF550_02680 IPR011005 Dihydropteroate synthase-like PF550_02680 IPR016425 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase, bacterial PF550_02680 IPR004588 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase, bacterial-type PF550_02685 IPR041715 Class II Histidinyl-tRNA synthetase (HisRS)-like catalytic core domain PF550_02685 IPR036621 Anticodon-binding domain superfamily PF550_02685 IPR004516 Histidine-tRNA ligase/ATP phosphoribosyltransferase regulatory subunit PF550_02685 IPR015807 Histidine-tRNA ligase PF550_02685 IPR006195 Aminoacyl-tRNA synthetase, class II PF550_02685 IPR004154 Anticodon-binding PF550_02695 IPR017687 Outer membrane protein assembly factor BamB PF550_02695 IPR018391 Pyrrolo-quinoline quinone beta-propeller repeat PF550_02695 IPR002372 Pyrrolo-quinoline quinone repeat PF550_02695 IPR011047 Quinoprotein alcohol dehydrogenase-like superfamily PF550_02695 IPR015943 WD40/YVTN repeat-like-containing domain superfamily PF550_02700 IPR005225 Small GTP-binding protein domain PF550_02700 IPR027417 P-loop containing nucleoside triphosphate hydrolase PF550_02700 IPR032859 GTPase Der, C-terminal KH-domain-like PF550_02700 IPR015946 K homology domain-like, alpha/beta PF550_02700 IPR016484 GTP-binding protein EngA PF550_02700 IPR031166 EngA-type guanine nucleotide-binding (G) domain PF550_02700 IPR006073 GTP binding domain PF550_02710 IPR003708 Bacterial protein export chaperone SecB PF550_02710 IPR035958 SecB-like superfamily PF550_02715 IPR011767 Glutaredoxin active site PF550_02715 IPR002109 Glutaredoxin PF550_02715 IPR014025 Glutaredoxin subgroup PF550_02715 IPR011900 Glutaredoxin, GrxC PF550_02715 IPR036249 Thioredoxin-like superfamily PF550_02725 IPR027417 P-loop containing nucleoside triphosphate hydrolase PF550_02725 IPR004881 Ribosome biogenesis GTPase RsgA PF550_02725 IPR030378 Circularly permuted (CP)-type guanine nucleotide-binding (G) domain PF550_02725 IPR010914 RsgA GTPase domain PF550_02725 IPR012340 Nucleic acid-binding, OB-fold PF550_02730 IPR013520 Exonuclease, RNase T/DNA polymerase III PF550_02730 IPR022894 Oligoribonuclease PF550_02730 IPR012337 Ribonuclease H-like superfamily PF550_02730 IPR036397 Ribonuclease H superfamily PF550_02740 IPR014358 Enoyl-[acyl-carrier-protein] reductase (NADH) PF550_02740 IPR036291 NAD(P)-binding domain superfamily PF550_02740 IPR002347 Short-chain dehydrogenase/reductase SDR PF550_02745 IPR003423 Outer membrane efflux protein PF550_02745 IPR010131 RND efflux system, outer membrane lipoprotein, NodT PF550_02750 IPR027417 P-loop containing nucleoside triphosphate hydrolase PF550_02750 IPR025857 MacB-like periplasmic core domain PF550_02750 IPR017911 ABC transporter, macrolide export, ATP-binding domain PF550_02750 IPR017871 ABC transporter, conserved site PF550_02750 IPR003439 ABC transporter-like PF550_02750 IPR003838 ABC transporter permease protein domain PF550_02750 IPR003593 AAA+ ATPase domain PF550_02755 IPR032317 RND efflux pump, membrane fusion protein, barrel-sandwich domain PF550_02755 IPR030190 Macrolide export protein MacA PF550_02755 IPR006143 RND efflux pump, membrane fusion protein PF550_02770 IPR002302 Leucine-tRNA ligase PF550_02770 IPR025709 Leucyl-tRNA synthetase, editing domain PF550_02770 IPR013155 Methionyl/Valyl/Leucyl/Isoleucyl-tRNA synthetase, anticodon-binding PF550_02770 IPR015413 Methionyl/Leucyl tRNA synthetase PF550_02770 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold PF550_02770 IPR009008 Valyl/Leucyl/Isoleucyl-tRNA synthetase, editing domain PF550_02770 IPR009080 Aminoacyl-tRNA synthetase, class Ia, anticodon-binding PF550_02770 IPR002300 Aminoacyl-tRNA synthetase, class Ia PF550_02770 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site PF550_02780 IPR011766 Thiamine pyrophosphate enzyme, C-terminal TPP-binding PF550_02780 IPR000399 TPP-binding enzyme, conserved site PF550_02780 IPR012001 Thiamine pyrophosphate enzyme, N-terminal TPP-binding domain PF550_02780 IPR012000 Thiamine pyrophosphate enzyme, central domain PF550_02780 IPR029061 Thiamin diphosphate-binding fold PF550_02780 IPR029035 DHS-like NAD/FAD-binding domain superfamily PF550_02780 IPR039368 Acetolactate synthase large subunit, TPP binding domain PF550_02780 IPR012846 Acetolactate synthase, large subunit, biosynthetic PF550_02785 IPR002912 ACT domain PF550_02785 IPR019455 Acetolactate synthase, small subunit, C-terminal PF550_02785 IPR004789 Acetolactate synthase, small subunit PF550_02785 IPR027271 Acetolactate synthase/Transcription factor NikR, C-terminal PF550_02785 IPR039557 AHAS, ACT domain PF550_02790 IPR036291 NAD(P)-binding domain superfamily PF550_02790 IPR014359 Ketol-acid reductoisomerase, prokaryotic PF550_02790 IPR013116 Ketol-acid reductoisomerase, N-terminal PF550_02790 IPR000506 Ketol-acid reductoisomerase, C-terminal PF550_02790 IPR013023 Ketol-acid reductoisomerase PF550_02790 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily PF550_02815 IPR004548 Peptide chain release factor 3 PF550_02815 IPR035647 EF-G domain III/V-like PF550_02815 IPR027417 P-loop containing nucleoside triphosphate hydrolase PF550_02815 IPR032090 Peptide chain release factor 3, C-terminal PF550_02815 IPR009000 Translation protein, beta-barrel domain superfamily PF550_02815 IPR000795 Transcription factor, GTP-binding domain PF550_02815 IPR005225 Small GTP-binding protein domain PF550_02815 IPR041732 Peptide chain release factor 3, GTP-binding domain PF550_02815 IPR038467 Peptide chain release factor 3, C-terminal domain superfamily PF550_02815 IPR004161 Translation elongation factor EFTu-like, domain 2 PF550_02815 IPR031157 Tr-type G domain, conserved site PF550_02830 IPR001130 TatD family PF550_02830 IPR032466 Metal-dependent hydrolase PF550_02830 IPR015991 Uncharacterised hydrolase TatD-type PF550_02830 IPR018228 Deoxyribonuclease, TatD-related, conserved site PF550_02835 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain PF550_02835 IPR000573 Aconitase A/isopropylmalate dehydratase small subunit, swivel domain PF550_02835 IPR036008 Aconitase, iron-sulfur domain PF550_02835 IPR018136 Aconitase family, 4Fe-4S cluster binding site PF550_02835 IPR006249 Aconitase/Iron-responsive element-binding protein 2 PF550_02835 IPR015928 Aconitase/3-isopropylmalate dehydratase, swivel PF550_02835 IPR015931 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha, subdomain 1/3 PF550_02840 IPR000594 THIF-type NAD/FAD binding fold PF550_02840 IPR035985 Ubiquitin-activating enzyme PF550_02850 IPR005119 LysR, substrate-binding PF550_02850 IPR037411 HTH-type transcriptional regulator AlsR, PBP2 domain PF550_02850 IPR000847 Transcription regulator HTH, LysR PF550_02850 IPR036388 Winged helix-like DNA-binding domain superfamily PF550_02850 IPR036390 Winged helix DNA-binding domain superfamily PF550_02860 IPR018517 tRNA-dihydrouridine synthase, conserved site PF550_02860 IPR004653 tRNA-dihydrouridine(20/20a) synthase PF550_02860 IPR001269 tRNA-dihydrouridine synthase PF550_02860 IPR013785 Aldolase-type TIM barrel PF550_02860 IPR035587 DUS-like, FMN-binding domain PF550_02865 IPR036259 MFS transporter superfamily PF550_02865 IPR020846 Major facilitator superfamily domain PF550_02865 IPR011701 Major facilitator superfamily PF550_02875 IPR000620 EamA domain PF550_02880 IPR008142 Alanine dehydrogenase/NAD(P) transhydrogenase, conserved site-1 PF550_02880 IPR007886 Alanine dehydrogenase/pyridine nucleotide transhydrogenase, N-terminal PF550_02880 IPR007698 Alanine dehydrogenase/pyridine nucleotide transhydrogenase, NAD(H)-binding domain PF550_02880 IPR036291 NAD(P)-binding domain superfamily PF550_02880 IPR008143 Alanine dehydrogenase/pyridine nucleotide transhydrogenase, conserved site-2 PF550_02885 IPR024605 NAD(P) transhydrogenase, alpha subunit, C-terminal PF550_02890 IPR012136 NADP transhydrogenase, beta subunit PF550_02890 IPR034300 NADP transhydrogenase beta-like domain PF550_02890 IPR029035 DHS-like NAD/FAD-binding domain superfamily PF550_02895 IPR005979 Light-dependent protochlorophyllide reductase PF550_02895 IPR002347 Short-chain dehydrogenase/reductase SDR PF550_02895 IPR036291 NAD(P)-binding domain superfamily PF550_02900 IPR004394 Protein Iojap/ribosomal silencing factor RsfS PF550_02905 IPR013022 Xylose isomerase-like, TIM barrel domain PF550_02905 IPR036237 Xylose isomerase-like superfamily PF550_02905 IPR026040 Hydroxypyruvate isomerase-like PF550_02910 IPR002204 3-hydroxyisobutyrate dehydrogenase-related, conserved site PF550_02910 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily PF550_02910 IPR013328 6-phosphogluconate dehydrogenase, domain 2 PF550_02910 IPR006115 6-phosphogluconate dehydrogenase, NADP-binding PF550_02910 IPR015815 3-hydroxyisobutyrate dehydrogenase-related PF550_02910 IPR036291 NAD(P)-binding domain superfamily PF550_02910 IPR029154 3-hydroxyisobutyrate dehydrogenase, NAD-binding domain PF550_02915 IPR029045 ClpP/crotonase-like domain superfamily PF550_02915 IPR001753 Enoyl-CoA hydratase/isomerase PF550_02915 IPR018376 Enoyl-CoA hydratase/isomerase, conserved site PF550_02920 IPR004358 Signal transduction histidine kinase-related protein, C-terminal PF550_02920 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain PF550_02920 IPR001789 Signal transduction response regulator, receiver domain PF550_02920 IPR036641 HPT domain superfamily PF550_02920 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily PF550_02920 IPR005467 Histidine kinase domain PF550_02920 IPR036890 Histidine kinase/HSP90-like ATPase superfamily PF550_02920 IPR003660 HAMP domain PF550_02920 IPR011006 CheY-like superfamily PF550_02920 IPR019247 Histidine kinase BarA, N-terminal PF550_02920 IPR003594 Histidine kinase/HSP90-like ATPase PF550_02920 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain PF550_02925 IPR001926 Pyridoxal-phosphate dependent enzyme PF550_02925 IPR001216 Cysteine synthase/cystathionine beta-synthase, pyridoxal-phosphate attachment site PF550_02925 IPR005858 Cysteine synthase CysM PF550_02925 IPR005856 Cysteine synthase PF550_02925 IPR036052 Tryptophan synthase beta subunit-like PLP-dependent enzyme PF550_02935 IPR001566 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD PF550_02935 IPR030390 RNA methyltransferase TrmA, active site PF550_02935 IPR012340 Nucleic acid-binding, OB-fold PF550_02935 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase PF550_02935 IPR002792 TRAM domain PF550_02935 IPR010280 (Uracil-5)-methyltransferase family PF550_02940 IPR012676 TGS-like PF550_02940 IPR033655 RelA, TGS domain PF550_02940 IPR004095 TGS PF550_02940 IPR007685 RelA/SpoT PF550_02940 IPR004811 RelA/SpoT family PF550_02940 IPR003607 HD/PDEase domain PF550_02940 IPR012675 Beta-grasp domain superfamily PF550_02940 IPR002912 ACT domain PF550_02945 IPR036291 NAD(P)-binding domain superfamily PF550_02945 IPR002347 Short-chain dehydrogenase/reductase SDR PF550_02945 IPR020904 Short-chain dehydrogenase/reductase, conserved site PF550_02950 IPR004518 NTP pyrophosphohydrolase MazG, putative catalytic core PF550_02950 IPR011551 NTP pyrophosphohydrolase MazG PF550_02955 IPR004509 Competence protein ComEA, helix-hairpin-helix domain PF550_02955 IPR010994 RuvA domain 2-like PF550_02960 IPR002646 Poly A polymerase, head domain PF550_02960 IPR010206 Poly(A) polymerase I PF550_02960 IPR032828 tRNA nucleotidyltransferase/poly(A) polymerase, RNA and SrmB- binding domain PF550_02960 IPR025866 Polymerase A arginine-rich C-terminal domain PF550_02965 IPR035907 7,8-Dihydro-6-hydroxymethylpterin-pyrophosphokinase HPPK superfamily PF550_02965 IPR000550 7,8-Dihydro-6-hydroxymethylpterin-pyrophosphokinase, HPPK PF550_02970 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain superfamily PF550_02970 IPR040442 Pyruvate kinase-like domain superfamily PF550_02970 IPR003700 Ketopantoate hydroxymethyltransferase PF550_02975 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold PF550_02975 IPR042176 Pantoate-beta-alanine ligase, C-terminal domain PF550_02975 IPR003721 Pantoate-beta-alanine ligase PF550_02975 IPR004821 Cytidyltransferase-like domain PF550_02980 IPR005337 RapZ-like family PF550_02980 IPR027417 P-loop containing nucleoside triphosphate hydrolase PF550_02985 IPR000032 Phosphocarrier protein HPr-like PF550_02985 IPR001020 Phosphotransferase system, HPr histidine phosphorylation site PF550_02985 IPR002114 Phosphotransferase system, HPr serine phosphorylation site PF550_02985 IPR035895 HPr-like superfamily PF550_02990 IPR023153 PSPTO4464-like domain superfamily PF550_02990 IPR006839 Ribosome-associated, YjgA PF550_02995 IPR025110 AMP-binding enzyme, C-terminal domain PF550_02995 IPR020845 AMP-binding, conserved site PF550_02995 IPR042099 AMP-dependent synthetase-like superfamily PF550_02995 IPR000873 AMP-dependent synthetase/ligase PF550_03000 IPR004095 TGS PF550_03000 IPR012676 TGS-like PF550_03000 IPR002320 Threonine-tRNA ligase, class IIa PF550_03000 IPR004154 Anticodon-binding PF550_03000 IPR006195 Aminoacyl-tRNA synthetase, class II PF550_03000 IPR002314 Aminoacyl-tRNA synthetase, class II (G/ P/ S/T) PF550_03000 IPR036621 Anticodon-binding domain superfamily PF550_03000 IPR018163 Threonyl/alanyl tRNA synthetase, class II-like, putative editing domain superfamily PF550_03000 IPR012947 Threonyl/alanyl tRNA synthetase, SAD PF550_03000 IPR033728 Threonine-tRNA ligase catalytic core domain PF550_03000 IPR012675 Beta-grasp domain superfamily PF550_03005 IPR036788 Translation initiation factor 3 (IF-3), C-terminal domain superfamily PF550_03005 IPR036787 Translation initiation factor 3 (IF-3), N-terminal domain superfamily PF550_03005 IPR001288 Translation initiation factor 3 PF550_03005 IPR019815 Translation initiation factor 3, C-terminal PF550_03005 IPR019814 Translation initiation factor 3, N-terminal PF550_03010 IPR036282 Glutathione S-transferase, C-terminal domain superfamily PF550_03010 IPR010987 Glutathione S-transferase, C-terminal-like PF550_03010 IPR004045 Glutathione S-transferase, N-terminal PF550_03010 IPR004046 Glutathione S-transferase, C-terminal PF550_03010 IPR036249 Thioredoxin-like superfamily PF550_03015 IPR032816 SNARE associated Golgi protein PF550_03020 IPR036259 MFS transporter superfamily PF550_03020 IPR004751 Drug antiporter protein PF550_03020 IPR020846 Major facilitator superfamily domain PF550_03020 IPR011701 Major facilitator superfamily PF550_03030 IPR037229 Ribosomal protein L35 superfamily PF550_03030 IPR001706 Ribosomal protein L35, non-mitochondrial PF550_03030 IPR018265 Ribosomal protein L35, conserved site PF550_03030 IPR021137 Ribosomal protein L35 PF550_03035 IPR035566 Ribosomal protein L20, C-terminal PF550_03035 IPR005813 Ribosomal protein L20 PF550_03055 IPR006195 Aminoacyl-tRNA synthetase, class II PF550_03055 IPR004529 Phenylalanyl-tRNA synthetase, class IIc, alpha subunit PF550_03055 IPR004188 Phenylalanine-tRNA ligase, class II, N-terminal PF550_03055 IPR022911 Phenylalanine-tRNA ligase alpha chain 1, bacterial PF550_03055 IPR010978 Class I and II aminoacyl-tRNA synthetase, tRNA-binding arm PF550_03055 IPR002319 Phenylalanyl-tRNA synthetase PF550_03060 IPR005121 Ferrodoxin-fold anticodon-binding domain PF550_03060 IPR002547 tRNA-binding domain PF550_03060 IPR005146 B3/B4 tRNA-binding domain PF550_03060 IPR009061 Putative DNA-binding domain superfamily PF550_03060 IPR036690 Ferrodoxin-fold anticodon-binding domain superfamily PF550_03060 IPR012340 Nucleic acid-binding, OB-fold PF550_03060 IPR004532 Phenylalanine-tRNA ligase, class IIc, beta subunit PF550_03060 IPR020825 Phenylalanyl-tRNA synthetase, B3/B4 PF550_03060 IPR041616 Phenylalanyl tRNA synthetase beta chain, core domain PF550_03060 IPR033714 Phenylalanly tRNA synthetase, tRNA-binding-domain PF550_03060 IPR005147 tRNA synthetase, B5-domain PF550_03065 IPR000119 Histone-like DNA-binding protein PF550_03065 IPR020816 Histone-like DNA-binding protein, conserved site PF550_03065 IPR005684 Integration host factor, alpha subunit PF550_03065 IPR010992 Integration host factor (IHF)-like DNA-binding domain superfamily PF550_03080 IPR012340 Nucleic acid-binding, OB-fold PF550_03080 IPR027417 P-loop containing nucleoside triphosphate hydrolase PF550_03080 IPR036269 Rho termination factor, N-terminal domain superfamily PF550_03080 IPR041703 Transcription termination factor Rho, ATP binding domain PF550_03080 IPR011112 Rho termination factor, N-terminal PF550_03080 IPR003593 AAA+ ATPase domain PF550_03080 IPR000194 ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain PF550_03080 IPR011129 Cold shock domain PF550_03080 IPR011113 Rho termination factor, RNA-binding domain PF550_03080 IPR004665 Transcription termination factor Rho PF550_03085 IPR017937 Thioredoxin, conserved site PF550_03085 IPR036249 Thioredoxin-like superfamily PF550_03085 IPR013766 Thioredoxin domain PF550_03085 IPR005746 Thioredoxin PF550_03090 IPR022371 Exopolyphosphatase PF550_03090 IPR030673 Pyrophosphatase, GppA/Ppx-type PF550_03090 IPR003695 Ppx/GppA phosphatase PF550_03095 IPR029045 ClpP/crotonase-like domain superfamily PF550_03095 IPR001095 Acetyl-CoA carboxylase, alpha subunit PF550_03095 IPR011763 Acetyl-coenzyme A carboxyltransferase, C-terminal PF550_03100 IPR015262 tRNA(Ile)-lysidine synthase , substrate-binding domain PF550_03100 IPR011063 tRNA(Ile)-lysidine/2-thiocytidine synthase, N-terminal PF550_03100 IPR012795 tRNA(Ile)-lysidine synthase, N-terminal PF550_03100 IPR012796 Lysidine-tRNA(Ile) synthetase, C-terminal PF550_03100 IPR012094 tRNA(Ile)-lysidine synthase PF550_03100 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold PF550_03105 IPR000304 Pyrroline-5-carboxylate reductase PF550_03105 IPR029036 Pyrroline-5-carboxylate reductase, dimerisation domain PF550_03105 IPR028939 Pyrroline-5-carboxylate reductase, catalytic, N-terminal PF550_03105 IPR036291 NAD(P)-binding domain superfamily PF550_03105 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily PF550_03110 IPR003425 CCB3/YggT PF550_03115 IPR036279 5'-3' exonuclease, C-terminal domain superfamily PF550_03115 IPR002562 3'-5' exonuclease domain PF550_03115 IPR012337 Ribonuclease H-like superfamily PF550_03115 IPR029060 PIN-like domain superfamily PF550_03115 IPR008918 Helix-hairpin-helix motif, class 2 PF550_03115 IPR002298 DNA polymerase A PF550_03115 IPR018320 DNA polymerase 1 PF550_03115 IPR036397 Ribonuclease H superfamily PF550_03115 IPR001098 DNA-directed DNA polymerase, family A, palm domain PF550_03115 IPR019760 DNA-directed DNA polymerase, family A, conserved site PF550_03115 IPR002421 5'-3' exonuclease, N-terminal PF550_03115 IPR020046 5'-3' exonuclease, alpha-helical arch, N-terminal PF550_03115 IPR020045 DNA polymerase I-like, H3TH domain PF550_03135 IPR042181 Type II secretion system, protein E, N-terminal PF550_03135 IPR013369 Type II secretion system GspE PF550_03135 IPR037257 General secretory system II, protein E, N-terminal superfamily PF550_03135 IPR027417 P-loop containing nucleoside triphosphate hydrolase PF550_03135 IPR001482 Type II/IV secretion system protein PF550_03140 IPR015946 K homology domain-like, alpha/beta PF550_03140 IPR019953 Organic hydroperoxide resistance protein famiy PF550_03140 IPR003718 OsmC/Ohr family PF550_03140 IPR036102 OsmC/Ohr superfamily PF550_03145 IPR036388 Winged helix-like DNA-binding domain superfamily PF550_03145 IPR000835 MarR-type HTH domain PF550_03145 IPR036390 Winged helix DNA-binding domain superfamily PF550_03155 IPR001110 Uncharacterised protein family UPF0012, conserved site PF550_03155 IPR036526 Carbon-nitrogen hydrolase superfamily PF550_03155 IPR003010 Carbon-nitrogen hydrolase PF550_03200 IPR038709 RNA polymerase sigma-54 factor, core-binding domain superfamily PF550_03200 IPR007634 RNA polymerase sigma factor 54, DNA-binding PF550_03200 IPR000394 RNA polymerase sigma factor 54 PF550_03200 IPR007046 RNA polymerase sigma factor 54, core-binding domain PF550_03205 IPR036567 Ribosome hibernation promotion factor-like PF550_03205 IPR003489 Ribosome hibernation promoting factor/RaiA PF550_03210 IPR002634 BolA protein PF550_03210 IPR036065 BolA-like superfamily PF550_03215 IPR036968 Enolpyruvate transferase domain superfamily PF550_03215 IPR001986 Enolpyruvate transferase domain PF550_03215 IPR020683 Ankyrin repeat-containing domain PF550_03215 IPR005750 UDP-N-acetylglucosamine 1-carboxyvinyltransferase PF550_03215 IPR013792 RNA 3'-terminal phosphate cyclase/enolpyruvate transferase, alpha/beta PF550_03215 IPR002110 Ankyrin repeat PF550_03220 IPR001348 ATP phosphoribosyltransferase HisG PF550_03220 IPR013820 ATP phosphoribosyltransferase, catalytic domain PF550_03220 IPR018198 ATP phosphoribosyltransferase, conserved site PF550_03220 IPR024893 ATP phosphoribosyltransferase HisG, short form PF550_03225 IPR016161 Aldehyde/histidinol dehydrogenase PF550_03225 IPR022695 Histidinol dehydrogenase, monofunctional PF550_03225 IPR001692 Histidinol dehydrogenase, conserved site PF550_03225 IPR012131 Histidinol dehydrogenase PF550_03230 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 PF550_03230 IPR015424 Pyridoxal phosphate-dependent transferase PF550_03230 IPR004839 Aminotransferase, class I/classII PF550_03230 IPR015421 Pyridoxal phosphate-dependent transferase, major domain PF550_03230 IPR005861 Histidinol-phosphate aminotransferase family PF550_03235 IPR019999 Anthranilate synthase component I-like PF550_03235 IPR005802 Aminodeoxychorismate synthase, component I PF550_03235 IPR005801 ADC synthase PF550_03235 IPR006805 Anthranilate synthase component I, N-terminal PF550_03235 IPR015890 Chorismate-utilising enzyme, C-terminal PF550_03265 IPR009057 Homeobox-like domain superfamily PF550_03275 IPR024474 Zinc-finger binding domain of transposase IS66 PF550_03275 IPR039552 Transposase IS66, C-terminal PF550_03275 IPR004291 Transposase, IS66 PF550_03275 IPR024463 Transposase TnpC, homeodomain PF550_03295 IPR015797 NUDIX hydrolase-like domain superfamily PF550_03295 IPR000086 NUDIX hydrolase domain PF550_03295 IPR000059 NUDIX hydrolase, NudL, conserved site PF550_03295 IPR023735 Uncharacterised nudix hydrolase NudL PF550_03300 IPR011004 Trimeric LpxA-like superfamily PF550_03300 IPR001451 Hexapeptide repeat PF550_03305 IPR000905 Gcp-like domain PF550_03305 IPR022496 tRNA threonylcarbamoyl adenosine modification protein TsaB PF550_03310 IPR007536 Ribosomal RNA small subunit methyltransferase J PF550_03310 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase PF550_03320 IPR029058 Alpha/Beta hydrolase fold PF550_03320 IPR000801 Putative esterase PF550_03320 IPR014186 S-formylglutathione hydrolase PF550_03330 IPR013785 Aldolase-type TIM barrel PF550_03330 IPR026019 Ribulose-phosphate 3-epimerase PF550_03330 IPR000056 Ribulose-phosphate 3-epimerase-like PF550_03330 IPR011060 Ribulose-phosphate binding barrel PF550_03335 IPR023214 HAD superfamily PF550_03335 IPR000150 Cof family PF550_03335 IPR006379 HAD-superfamily hydrolase, subfamily IIB PF550_03335 IPR036412 HAD-like superfamily PF550_03345 IPR011706 Multicopper oxidase, type 2 PF550_03345 IPR001117 Multicopper oxidase, type 1 PF550_03345 IPR034284 Copper resistance protein, first cupredoxin domain PF550_03345 IPR019546 Twin-arginine translocation pathway, signal sequence, bacterial/archaeal PF550_03345 IPR011707 Multicopper oxidase, type 3 PF550_03345 IPR006376 Copper-resistance protein CopA PF550_03345 IPR006311 Twin-arginine translocation pathway, signal sequence PF550_03345 IPR034279 Copper resistance protein, third cupredoxin domain PF550_03345 IPR034282 Copper resistance protein CopA, second cupredoxin domain PF550_03345 IPR008972 Cupredoxin PF550_03345 IPR002355 Multicopper oxidase, copper-binding site PF550_03345 IPR033138 Multicopper oxidases, conserved site PF550_03360 IPR000390 Small multidrug resistance protein family PF550_03365 IPR023546 Methylated-DNA--protein-cysteine methyltransferase PF550_03365 IPR036217 Methylated DNA-protein cysteine methyltransferase, DNA binding domain PF550_03365 IPR001497 Methylated-DNA-[protein]-cysteine S-methyltransferase, active site PF550_03365 IPR008332 Methylguanine DNA methyltransferase, ribonuclease-like domain PF550_03365 IPR036388 Winged helix-like DNA-binding domain superfamily PF550_03365 IPR014048 Methylated-DNA-[protein]-cysteine S-methyltransferase, DNA binding PF550_03365 IPR036631 Methylated DNA-protein cysteine methyltransferase domain superfamily PF550_03370 IPR016117 ArgJ-like domain superfamily PF550_03370 IPR042195 ArgJ beta chain, C-terminal domain PF550_03370 IPR002813 Arginine biosynthesis protein ArgJ PF550_03375 IPR003473 Quinolinate synthetase A PF550_03375 IPR023513 Quinolinate synthase A, type 1 PF550_03375 IPR036094 Quinolinate synthetase A superfamily PF550_03400 IPR006650 Adenosine/AMP deaminase active site PF550_03400 IPR001365 Adenosine/AMP deaminase domain PF550_03400 IPR028893 Adenosine deaminase PF550_03400 IPR006330 Adenosine/adenine deaminase PF550_03400 IPR032466 Metal-dependent hydrolase PF550_03405 IPR020843 Polyketide synthase, enoylreductase domain PF550_03405 IPR013149 Alcohol dehydrogenase, C-terminal PF550_03405 IPR013154 Alcohol dehydrogenase, N-terminal PF550_03405 IPR002328 Alcohol dehydrogenase, zinc-type, conserved site PF550_03405 IPR011032 GroES-like superfamily PF550_03405 IPR036291 NAD(P)-binding domain superfamily PF550_03410 IPR036390 Winged helix DNA-binding domain superfamily PF550_03410 IPR036388 Winged helix-like DNA-binding domain superfamily PF550_03410 IPR000847 Transcription regulator HTH, LysR PF550_03410 IPR005119 LysR, substrate-binding PF550_03415 IPR037069 Acyl-CoA dehydrogenase/oxidase, N-terminal domain superfamily PF550_03415 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily PF550_03415 IPR006089 Acyl-CoA dehydrogenase, conserved site PF550_03415 IPR006091 Acyl-CoA oxidase/dehydrogenase, central domain PF550_03415 IPR036250 Acyl-CoA dehydrogenase-like, C-terminal PF550_03415 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal PF550_03415 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal PF550_03420 IPR011701 Major facilitator superfamily PF550_03420 IPR004746 Major facilitator superfamily, aromatic acid:H+ symporter family PF550_03420 IPR020846 Major facilitator superfamily domain PF550_03420 IPR036259 MFS transporter superfamily PF550_03420 IPR005829 Sugar transporter, conserved site PF550_03425 IPR003673 CoA-transferase family III PF550_03425 IPR023606 CoA-transferase family III domain superfamily PF550_03430 IPR023772 DNA-binding HTH domain, TetR-type, conserved site PF550_03430 IPR009057 Homeobox-like domain superfamily PF550_03430 IPR041490 HTH-type transcriptional repressor KstR2, C-terminal PF550_03430 IPR036271 Tetracyclin repressor-like, C-terminal domain superfamily PF550_03430 IPR001647 DNA-binding HTH domain, TetR-type PF550_03440 IPR036197 NarG-like superfamily PF550_03440 IPR012830 Citrate utilization protein B PF550_03445 IPR036188 FAD/NAD(P)-binding domain superfamily PF550_03445 IPR010960 Flavocytochrome c PF550_03445 IPR011031 Multihaem cytochrome PF550_03445 IPR036280 Multiheme cytochrome superfamily PF550_03445 IPR027477 Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain superfamily PF550_03445 IPR012286 Tetrahaem cytochrome domain PF550_03445 IPR003953 FAD-dependent oxidoreductase 2, FAD binding domain PF550_03450 IPR036390 Winged helix DNA-binding domain superfamily PF550_03450 IPR000847 Transcription regulator HTH, LysR PF550_03450 IPR036388 Winged helix-like DNA-binding domain superfamily PF550_03450 IPR005119 LysR, substrate-binding PF550_03460 IPR005829 Sugar transporter, conserved site PF550_03460 IPR004736 MFS transporter, metabolite:H symporter PF550_03460 IPR036259 MFS transporter superfamily PF550_03460 IPR011701 Major facilitator superfamily PF550_03460 IPR020846 Major facilitator superfamily domain PF550_03465 IPR005119 LysR, substrate-binding PF550_03465 IPR000847 Transcription regulator HTH, LysR PF550_03465 IPR036388 Winged helix-like DNA-binding domain superfamily PF550_03465 IPR036390 Winged helix DNA-binding domain superfamily PF550_03470 IPR001123 Amino acid exporter protein, LeuE-type PF550_03475 IPR000847 Transcription regulator HTH, LysR PF550_03475 IPR036388 Winged helix-like DNA-binding domain superfamily PF550_03475 IPR036390 Winged helix DNA-binding domain superfamily PF550_03475 IPR005119 LysR, substrate-binding PF550_03485 IPR038071 UROD/MetE-like superfamily PF550_03485 IPR006276 Cobalamin-independent methionine synthase PF550_03485 IPR013215 Cobalamin-independent methionine synthase MetE, N-terminal PF550_03485 IPR002629 Cobalamin-independent methionine synthase MetE, C-terminal/archaeal PF550_03490 IPR002563 Flavin reductase like domain PF550_03490 IPR019917 FMN reductase (NADH) RutF PF550_03490 IPR012349 FMN-binding split barrel PF550_03525 IPR031409 Darcynin PF550_03540 IPR012348 Ribonucleotide reductase-like PF550_03540 IPR009078 Ferritin-like superfamily PF550_03540 IPR000358 Ribonucleotide reductase small subunit family PF550_03540 IPR033909 Ribonucleotide reductase small subunit PF550_03550 IPR005144 ATP-cone domain PF550_03550 IPR013346 Ribonucleotide reductase, class I , alpha subunit PF550_03550 IPR000788 Ribonucleotide reductase large subunit, C-terminal PF550_03550 IPR013509 Ribonucleotide reductase large subunit, N-terminal PF550_03550 IPR008926 Ribonucleotide reductase R1 subunit, N-terminal PF550_03550 IPR039718 Ribonucleoside-diphosphate reductase large subunit PF550_03560 IPR011006 CheY-like superfamily PF550_03560 IPR001867 OmpR/PhoB-type DNA-binding domain PF550_03560 IPR016032 Signal transduction response regulator, C-terminal effector PF550_03560 IPR001789 Signal transduction response regulator, receiver domain PF550_03560 IPR039420 Transcriptional regulatory protein WalR-like PF550_03560 IPR036388 Winged helix-like DNA-binding domain superfamily PF550_03565 IPR036890 Histidine kinase/HSP90-like ATPase superfamily PF550_03565 IPR004358 Signal transduction histidine kinase-related protein, C-terminal PF550_03565 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily PF550_03565 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain PF550_03565 IPR003660 HAMP domain PF550_03565 IPR003594 Histidine kinase/HSP90-like ATPase PF550_03565 IPR005467 Histidine kinase domain PF550_03575 IPR000160 GGDEF domain PF550_03575 IPR033424 Membrane-associated sensor domain PF550_03575 IPR029787 Nucleotide cyclase PF550_03580 IPR023043 NAD(P)H-quinone oxidoreductase subunit 3, bacterial/plastid PF550_03580 IPR000440 NADH:ubiquinone/plastoquinone oxidoreductase, chain 3 PF550_03580 IPR038430 NADH:ubiquinone oxidoreductase, subunit 3 superfamily PF550_03585 IPR006137 NADH:ubiquinone oxidoreductase-like, 20kDa subunit PF550_03585 IPR006138 NADH-ubiquinone oxidoreductase, 20 Kd subunit PF550_03590 IPR020396 NADH:ubiquinone oxidoreductase, 30kDa subunit, conserved site PF550_03590 IPR029014 [NiFe]-hydrogenase, large subunit PF550_03590 IPR014029 NADH:ubiquinone oxidoreductase, 49kDa subunit, conserved site PF550_03590 IPR022885 NAD(P)H-quinone oxidoreductase subunit D/H PF550_03590 IPR001268 NADH:ubiquinone oxidoreductase, 30kDa subunit PF550_03590 IPR010218 NADH dehydrogenase, subunit C PF550_03590 IPR038290 NADH-quinone oxidoreductase, subunit D superfamily PF550_03590 IPR001135 NADH-quinone oxidoreductase, subunit D PF550_03590 IPR023062 NADH dehydrogenase, subunit CD PF550_03590 IPR037232 NADH:ubiquinone oxidoreductase, 30kDa subunit superfamily PF550_03595 IPR002023 NADH-quinone oxidoreductase subunit E-like PF550_03595 IPR042128 NuoE domain PF550_03595 IPR041921 NADH-quinone oxidoreductase subunit E, N-terminal PF550_03595 IPR036249 Thioredoxin-like superfamily PF550_03600 IPR019554 Soluble ligand binding domain PF550_03600 IPR037207 NADH-ubiquinone oxidoreductase 51kDa subunit, iron-sulphur binding domain superfamily PF550_03600 IPR019575 NADH-ubiquinone oxidoreductase 51kDa subunit, iron-sulphur binding domain PF550_03600 IPR037225 NADH-ubiquinone oxidoreductase 51kDa subunit, FMN-binding domain superfamily PF550_03600 IPR011538 NADH-ubiquinone oxidoreductase 51kDa subunit, FMN-binding domain PF550_03600 IPR001949 NADH:ubiquinone oxidoreductase, 51kDa subunit, conserved site PF550_03600 IPR011537 NADH ubiquinone oxidoreductase, F subunit PF550_03605 IPR010228 NADH:ubiquinone oxidoreductase, subunit G PF550_03605 IPR036010 2Fe-2S ferredoxin-like superfamily PF550_03605 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain PF550_03605 IPR009010 Aspartate decarboxylase-like domain superfamily PF550_03605 IPR006656 Molybdopterin oxidoreductase PF550_03605 IPR006963 Molybdopterin oxidoreductase, 4Fe-4S domain PF550_03605 IPR000283 NADH:ubiquinone oxidoreductase, 75kDa subunit, conserved site PF550_03605 IPR019574 NADH:ubiquinone oxidoreductase, subunit G, iron-sulphur binding PF550_03610 IPR001694 NADH:ubiquinone oxidoreductase, subunit 1/F420H2 oxidoreductase subunit H PF550_03610 IPR018086 NADH:ubiquinone oxidoreductase, subunit 1, conserved site PF550_03615 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain PF550_03615 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site PF550_03615 IPR010226 NADH-quinone oxidoreductase, chain I PF550_03620 IPR001457 NADH:ubiquinone/plastoquinone oxidoreductase, chain 6 PF550_03620 IPR042106 NADH-ubiquinone/plastoquinone oxidoreductase chain 6, subunit NuoJ PF550_03625 IPR001133 NADH-ubiquinone oxidoreductase chain 4L/K PF550_03625 IPR039428 NADH-ubiquinone oxidoreductase chain 4L/Mnh complex subunit C1-like PF550_03630 IPR003945 NADH-plastoquinone oxidoreductase, chain 5 PF550_03630 IPR018393 NADH-plastoquinone oxidoreductase, chain 5 subgroup PF550_03630 IPR001750 NADH:quinone oxidoreductase/Mrp antiporter, membrane subunit PF550_03630 IPR001516 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminal PF550_03635 IPR010227 NADH-quinone oxidoreductase, chain M/4 PF550_03635 IPR003918 NADH:ubiquinone oxidoreductase PF550_03635 IPR001750 NADH:quinone oxidoreductase/Mrp antiporter, membrane subunit PF550_03640 IPR001750 NADH:quinone oxidoreductase/Mrp antiporter, membrane subunit PF550_03640 IPR010096 NAD(P)H-quinone oxidoreductase, subunit N/subunit 2 PF550_03645 IPR005765 Uracil phosphoribosyl transferase PF550_03645 IPR034332 Uracil phosphoribosyltransferase, bacterial-type PF550_03645 IPR000836 Phosphoribosyltransferase domain PF550_03645 IPR029057 Phosphoribosyltransferase-like PF550_03650 IPR012156 Cold shock, CspA PF550_03650 IPR011129 Cold shock domain PF550_03650 IPR019844 Cold-shock (CSD) domain PF550_03650 IPR002059 Cold-shock protein, DNA-binding PF550_03650 IPR012340 Nucleic acid-binding, OB-fold PF550_03660 IPR036390 Winged helix DNA-binding domain superfamily PF550_03660 IPR000847 Transcription regulator HTH, LysR PF550_03660 IPR036388 Winged helix-like DNA-binding domain superfamily PF550_03660 IPR005119 LysR, substrate-binding PF550_03665 IPR008333 Flavoprotein pyridine nucleotide cytochrome reductase-like, FAD-binding domain PF550_03665 IPR017927 FAD-binding domain, ferredoxin reductase-type PF550_03665 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase PF550_03665 IPR033892 Ferredoxin--NADP reductase, bacteria PF550_03665 IPR039261 Ferredoxin-NADP reductase (FNR), nucleotide-binding domain PF550_03665 IPR001433 Oxidoreductase FAD/NAD(P)-binding PF550_03665 IPR017938 Riboflavin synthase-like beta-barrel PF550_03680 IPR008910 Conserved TM helix PF550_03690 IPR036188 FAD/NAD(P)-binding domain superfamily PF550_03690 IPR023166 HI0933-like insert domain superfamily PF550_03690 IPR004792 3-Dehydro-bile acid delta(4,6)-reductase-like PF550_03695 IPR027278 1-aminocyclopropane-1-carboxylate deaminase/D-cysteine desulfhydrase PF550_03695 IPR005966 D-cysteine desulfhydrase PF550_03695 IPR001926 Pyridoxal-phosphate dependent enzyme PF550_03695 IPR036052 Tryptophan synthase beta subunit-like PLP-dependent enzyme PF550_03700 IPR039562 Membrane fusion protein, biotin-lipoyl like domain PF550_03725 IPR009080 Aminoacyl-tRNA synthetase, class Ia, anticodon-binding PF550_03725 IPR012340 Nucleic acid-binding, OB-fold PF550_03725 IPR029038 Methionyl-tRNA synthetase, Zn-domain PF550_03725 IPR033911 Methioninyl-tRNA synthetase core domain PF550_03725 IPR015413 Methionyl/Leucyl tRNA synthetase PF550_03725 IPR004495 Methionyl-tRNA synthetase, beta subunit, C-terminal PF550_03725 IPR023458 Methionine-tRNA ligase, type 1 PF550_03725 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold PF550_03725 IPR041872 Methionyl-tRNA synthetase, anticodon-binding domain PF550_03725 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site PF550_03725 IPR014758 Methionyl-tRNA synthetase PF550_03725 IPR002547 tRNA-binding domain PF550_03735 IPR033756 Flagellum site-determining protein YlxH/ Fe-S cluster assembling factor NBP35 PF550_03735 IPR000808 Mrp, conserved site PF550_03735 IPR027417 P-loop containing nucleoside triphosphate hydrolase PF550_03735 IPR034904 Fe-S cluster assembly domain superfamily PF550_03735 IPR019591 Mrp/NBP35 ATP-binding protein PF550_03740 IPR010049 MTA/SAH nucleosidase PF550_03740 IPR000845 Nucleoside phosphorylase domain PF550_03740 IPR035994 Nucleoside phosphorylase superfamily PF550_03755 IPR011962 dCTP deaminase PF550_03755 IPR029054 dUTPase-like PF550_03755 IPR036157 dUTPase-like superfamily PF550_03755 IPR033704 dUTPase, trimeric PF550_03785 IPR018517 tRNA-dihydrouridine synthase, conserved site PF550_03785 IPR001269 tRNA-dihydrouridine synthase PF550_03785 IPR042270 tRNA-dihydrouridine(16) synthase, C-terminal PF550_03785 IPR013785 Aldolase-type TIM barrel PF550_03785 IPR035587 DUS-like, FMN-binding domain PF550_03785 IPR032886 tRNA-dihydrouridine(16) synthase PF550_03795 IPR022941 Signal recognition particle, SRP54 subunit PF550_03795 IPR000897 Signal recognition particle, SRP54 subunit, GTPase domain PF550_03795 IPR042101 Signal recognition particle SRP54, N-terminal domain superfamily PF550_03795 IPR004780 Signal recognition particle protein PF550_03795 IPR027417 P-loop containing nucleoside triphosphate hydrolase PF550_03795 IPR013822 Signal recognition particle SRP54, helical bundle PF550_03795 IPR036891 Signal recognition particle, SRP54 subunit, M-domain superfamily PF550_03795 IPR003593 AAA+ ATPase domain PF550_03795 IPR004125 Signal recognition particle, SRP54 subunit, M-domain PF550_03800 IPR004619 Type III pantothenate kinase PF550_03810 IPR002781 Transmembrane protein TauE-like PF550_03820 IPR011890 Structural maintenance of chromosomes protein, prokaryotic PF550_03820 IPR027417 P-loop containing nucleoside triphosphate hydrolase PF550_03820 IPR003395 RecF/RecN/SMC, N-terminal PF550_03820 IPR024704 Structural maintenance of chromosomes protein PF550_03820 IPR010935 SMCs flexible hinge PF550_03820 IPR036277 SMCs flexible hinge superfamily PF550_03830 IPR001357 BRCT domain PF550_03830 IPR001679 NAD-dependent DNA ligase PF550_03830 IPR041663 DisA/LigA, helix-hairpin-helix motif PF550_03830 IPR004149 Zinc-finger, NAD-dependent DNA ligase C4-type PF550_03830 IPR010994 RuvA domain 2-like PF550_03830 IPR012340 Nucleic acid-binding, OB-fold PF550_03830 IPR003583 Helix-hairpin-helix DNA-binding motif, class 1 PF550_03830 IPR004150 NAD-dependent DNA ligase, OB-fold PF550_03830 IPR013839 NAD-dependent DNA ligase, adenylation PF550_03830 IPR036420 BRCT domain superfamily PF550_03830 IPR033136 NAD-dependent DNA ligase, conserved site PF550_03830 IPR018239 NAD-dependent DNA ligase, active site PF550_03830 IPR013840 NAD-dependent DNA ligase, N-terminal PF550_03835 IPR008331 Ferritin/DPS protein domain PF550_03835 IPR002024 Bacterioferritin PF550_03835 IPR012347 Ferritin-like PF550_03835 IPR009040 Ferritin-like diiron domain PF550_03835 IPR009078 Ferritin-like superfamily PF550_03840 IPR036259 MFS transporter superfamily PF550_03840 IPR020846 Major facilitator superfamily domain PF550_03840 IPR011701 Major facilitator superfamily PF550_03845 IPR001830 Glycosyl transferase, family 20 PF550_03845 IPR012766 Alpha,alpha-trehalose-phosphate synthase PF550_03850 IPR003337 Trehalose-phosphatase PF550_03850 IPR023214 HAD superfamily PF550_03850 IPR006379 HAD-superfamily hydrolase, subfamily IIB PF550_03850 IPR036412 HAD-like superfamily PF550_03855 IPR011814 Malonyl-[acyl-carrier protein] O-methyltransferase BioC PF550_03855 IPR013216 Methyltransferase type 11 PF550_03855 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase PF550_03855 IPR029058 Alpha/Beta hydrolase fold PF550_03855 IPR000073 Alpha/beta hydrolase fold-1 PF550_03860 IPR013785 Aldolase-type TIM barrel PF550_03860 IPR005814 Aminotransferase class-III PF550_03860 IPR010722 Biotin and thiamin synthesis-associated domain PF550_03860 IPR002684 Biotin synthase/Biotin biosynthesis bifunctional protein BioAB PF550_03860 IPR005815 Adenosylmethionine--8-amino-7-oxononanoate aminotransferase BioA PF550_03860 IPR015424 Pyridoxal phosphate-dependent transferase PF550_03860 IPR015421 Pyridoxal phosphate-dependent transferase, major domain PF550_03860 IPR007197 Radical SAM PF550_03860 IPR006638 Elp3/MiaB/NifB PF550_03860 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 PF550_03865 IPR001917 Aminotransferase, class-II, pyridoxal-phosphate binding site PF550_03865 IPR004839 Aminotransferase, class I/classII PF550_03865 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 PF550_03865 IPR015421 Pyridoxal phosphate-dependent transferase, major domain PF550_03865 IPR015424 Pyridoxal phosphate-dependent transferase PF550_03865 IPR004723 8-amino-7-oxononanoate synthase, Archaea/Proteobacteria type PF550_03870 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase PF550_03870 IPR011814 Malonyl-[acyl-carrier protein] O-methyltransferase BioC PF550_03875 IPR027417 P-loop containing nucleoside triphosphate hydrolase PF550_03875 IPR004472 Dethiobiotin synthase BioD PF550_03880 IPR018496 Pseudouridine synthase, RsuA/RluB/E/F, conserved site PF550_03880 IPR000748 Pseudouridine synthase, RsuA/RluB/E/F PF550_03880 IPR006145 Pseudouridine synthase, RsuA/RluA PF550_03880 IPR020103 Pseudouridine synthase, catalytic domain superfamily PF550_03880 IPR042092 Pseudouridine synthase, RsuA/RluB/E/F, catalytic domain PF550_03880 IPR036986 RNA-binding S4 domain superfamily PF550_03880 IPR002942 RNA-binding S4 domain PF550_03885 IPR005234 Chromosome segregation/condensation protein ScpB PF550_03885 IPR036388 Winged helix-like DNA-binding domain superfamily PF550_03885 IPR036390 Winged helix DNA-binding domain superfamily PF550_03890 IPR003768 Segregation and condensation protein A PF550_03895 IPR017945 DHBP synthase RibB-like alpha/beta domain superfamily PF550_03895 IPR006070 YrdC-like domain PF550_03900 IPR007411 Elongation factor P hydroxylase PF550_03905 IPR003772 Large ribosomal RNA subunit accumulation protein YceD PF550_03905 IPR039255 Large ribosomal RNA subunit accumulation protein YceD, bacteria PF550_03910 IPR002677 Ribosomal protein L32p PF550_03910 IPR011332 Zinc-binding ribosomal protein PF550_03915 IPR016035 Acyl transferase/acyl hydrolase/lysophospholipase PF550_03915 IPR001227 Acyl transferase domain superfamily PF550_03915 IPR014043 Acyl transferase PF550_03915 IPR024925 Malonyl CoA-acyl carrier protein transacylase PF550_03915 IPR004410 Malonyl CoA-acyl carrier protein transacylase, FabD-type PF550_03915 IPR016036 Malonyl-CoA ACP transacylase, ACP-binding PF550_03920 IPR002347 Short-chain dehydrogenase/reductase SDR PF550_03920 IPR020904 Short-chain dehydrogenase/reductase, conserved site PF550_03920 IPR036291 NAD(P)-binding domain superfamily PF550_03920 IPR011284 3-oxoacyl-(acyl-carrier-protein) reductase PF550_03925 IPR009081 Phosphopantetheine binding ACP domain PF550_03925 IPR006162 Phosphopantetheine attachment site PF550_03925 IPR003231 Acyl carrier protein (ACP) PF550_03925 IPR036736 ACP-like superfamily PF550_03930 IPR014004 Transport-associated and nodulation domain, bacteria PF550_03930 IPR018392 LysM domain PF550_03930 IPR036779 LysM domain superfamily PF550_03930 IPR007055 BON domain PF550_03935 IPR029056 Ribokinase-like PF550_03935 IPR013749 Pyridoxamine kinase/Phosphomethylpyrimidine kinase PF550_03935 IPR004399 Hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase PF550_03935 IPR016084 Haem oxygenase-like, multi-helical PF550_03935 IPR013785 Aldolase-type TIM barrel PF550_03935 IPR034291 Thiamine phosphate synthase PF550_03935 IPR004305 Thiaminase-2/PQQC PF550_03935 IPR022998 Thiamine phosphate synthase/TenI PF550_03935 IPR036206 Thiamin phosphate synthase superfamily PF550_03945 IPR000422 3,4-dihydroxy-2-butanone 4-phosphate synthase, RibB PF550_03945 IPR017945 DHBP synthase RibB-like alpha/beta domain superfamily PF550_03960 IPR003190 Aspartate decarboxylase PF550_03960 IPR009010 Aspartate decarboxylase-like domain superfamily PF550_03965 IPR036416 Peptidyl-tRNA hydrolase superfamily PF550_03965 IPR018171 Peptidyl-tRNA hydrolase, conserved site PF550_03965 IPR001328 Peptidyl-tRNA hydrolase PF550_03970 IPR020056 Ribosomal protein L25/Gln-tRNA synthetase, N-terminal PF550_03970 IPR029751 Ribosomal protein L25 PF550_03970 IPR011035 Ribosomal protein L25/Gln-tRNA synthetase, anti-codon-binding domain superfamily PF550_03970 IPR020055 Ribosomal protein L25, short-form PF550_03975 IPR000842 Phosphoribosyl pyrophosphate synthetase, conserved site PF550_03975 IPR037515 Ribose-phosphate pyrophosphokinase, bacterial-type PF550_03975 IPR005946 Ribose-phosphate pyrophosphokinase PF550_03975 IPR029099 Ribose-phosphate pyrophosphokinase, N-terminal domain PF550_03975 IPR000836 Phosphoribosyltransferase domain PF550_03975 IPR029057 Phosphoribosyltransferase-like PF550_04000 IPR036554 GHMP kinase, C-terminal domain superfamily PF550_04000 IPR006204 GHMP kinase N-terminal domain PF550_04000 IPR004424 4-diphosphocytidyl-2C-methyl-D-erythritol kinase PF550_04000 IPR013750 GHMP kinase, C-terminal domain PF550_04000 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup PF550_04000 IPR020568 Ribosomal protein S5 domain 2-type fold PF550_04005 IPR004565 Outer membrane lipoprotein LolB PF550_04005 IPR029046 Lipoprotein localisation LolA/LolB/LppX PF550_04015 IPR036453 Glutamyl tRNA-reductase dimerization domain superfamily PF550_04015 IPR018214 Glutamyl-tRNA reductase, conserved site PF550_04015 IPR000343 Tetrapyrrole biosynthesis, glutamyl-tRNA reductase PF550_04015 IPR015895 Tetrapyrrole biosynthesis, glutamyl-tRNA reductase, N-terminal PF550_04015 IPR015896 Tetrapyrrole biosynthesis, glutamyl-tRNA reductase, dimerisation domain PF550_04015 IPR036343 Glutamyl-tRNA reductase, N-terminal domain superfamily PF550_04015 IPR036291 NAD(P)-binding domain superfamily PF550_04015 IPR006151 Quinate/shikimate 5-dehydrogenase/glutamyl-tRNA reductase PF550_04020 IPR013173 DNA primase DnaG, DnaB-binding domain PF550_04020 IPR013264 DNA primase, catalytic core, N-terminal PF550_04020 IPR037068 DNA primase, catalytic core, N-terminal domain superfamily PF550_04020 IPR019475 DNA primase, DnaB-helicase binding domain PF550_04020 IPR006295 DNA primase, DnaG PF550_04020 IPR036977 DNA Primase, CHC2-type zinc finger PF550_04020 IPR030846 DNA primase DnaG, bacteria PF550_04020 IPR034151 Bacterial DnaG primase, TOPRIM domain PF550_04020 IPR006171 TOPRIM domain PF550_04020 IPR002694 Zinc finger, CHC2-type PF550_04020 IPR016136 DNA helicase DnaB, N-terminal/DNA primase DnaG, C-terminal PF550_04025 IPR017689 Outer membrane protein assembly factor BamD PF550_04025 IPR039565 Outer membrane lipoprotein BamD-like PF550_04025 IPR011990 Tetratricopeptide-like helical domain superfamily PF550_04030 IPR006225 Pseudouridine synthase, RluC/RluD PF550_04030 IPR006224 Pseudouridine synthase, RluC/RluD, conserved site PF550_04030 IPR020103 Pseudouridine synthase, catalytic domain superfamily PF550_04030 IPR002942 RNA-binding S4 domain PF550_04030 IPR036986 RNA-binding S4 domain superfamily PF550_04030 IPR006145 Pseudouridine synthase, RsuA/RluA PF550_04035 IPR011324 Cytotoxic necrotizing factor-like, catalytic PF550_04035 IPR003730 Multi-copper polyphenol oxidoreductase PF550_04035 IPR038371 Multi-copper polyphenol oxidoreductase superfamily PF550_04040 IPR008254 Flavodoxin/nitric oxide synthase PF550_04040 IPR029039 Flavoprotein-like superfamily PF550_04040 IPR005025 NADPH-dependent FMN reductase-like PF550_04045 IPR023620 Small protein B PF550_04045 IPR000037 SsrA-binding protein PF550_04045 IPR020081 SsrA-binding protein, conserved site PF550_04050 IPR004821 Cytidyltransferase-like domain PF550_04050 IPR001980 Phosphopantetheine adenylyltransferase PF550_04050 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold PF550_04055 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain PF550_04055 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site PF550_04075 IPR005119 LysR, substrate-binding PF550_04075 IPR000847 Transcription regulator HTH, LysR PF550_04075 IPR036390 Winged helix DNA-binding domain superfamily PF550_04075 IPR036388 Winged helix-like DNA-binding domain superfamily PF550_04080 IPR011829 Tartrate dehydrogenase PF550_04080 IPR024084 Isopropylmalate dehydrogenase-like domain PF550_04080 IPR019818 Isocitrate/isopropylmalate dehydrogenase, conserved site PF550_04085 IPR000060 BCCT transporter family PF550_04090 IPR029058 Alpha/Beta hydrolase fold PF550_04090 IPR013094 Alpha/beta hydrolase fold-3 PF550_04090 IPR002168 Lipase, GDXG, putative histidine active site PF550_04090 IPR033140 Lipase, GDXG, putative serine active site PF550_04095 IPR015879 Aromatic-ring-hydroxylating dioxygenase, alpha subunit, C-terminal domain PF550_04095 IPR015881 Aromatic-ring-hydroxylating dioxygenase, 2Fe-2S-binding site PF550_04095 IPR039004 Carnitine monooxygenase oxygenase subunit PF550_04095 IPR017941 Rieske [2Fe-2S] iron-sulphur domain PF550_04095 IPR036922 Rieske [2Fe-2S] iron-sulphur domain superfamily PF550_04095 IPR001663 Aromatic-ring-hydroxylating dioxygenase, alpha subunit PF550_04100 IPR016160 Aldehyde dehydrogenase, cysteine active site PF550_04100 IPR016163 Aldehyde dehydrogenase, C-terminal PF550_04100 IPR016161 Aldehyde/histidinol dehydrogenase PF550_04100 IPR029510 Aldehyde dehydrogenase, glutamic acid active site PF550_04100 IPR016162 Aldehyde dehydrogenase, N-terminal PF550_04100 IPR015590 Aldehyde dehydrogenase domain PF550_04100 IPR010102 Succinate semialdehyde dehydrogenase PF550_04105 IPR017938 Riboflavin synthase-like beta-barrel PF550_04105 IPR000951 Phthalate dioxygenase reductase PF550_04105 IPR001433 Oxidoreductase FAD/NAD(P)-binding PF550_04105 IPR017927 FAD-binding domain, ferredoxin reductase-type PF550_04105 IPR039261 Ferredoxin-NADP reductase (FNR), nucleotide-binding domain PF550_04105 IPR039003 Carnitine monooxygenase reductase subunit PF550_04105 IPR012675 Beta-grasp domain superfamily PF550_04105 IPR006058 2Fe-2S ferredoxin, iron-sulphur binding site PF550_04105 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain PF550_04105 IPR036010 2Fe-2S ferredoxin-like superfamily PF550_04105 IPR008333 Flavoprotein pyridine nucleotide cytochrome reductase-like, FAD-binding domain PF550_04120 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold PF550_04120 IPR000132 Nitrilase/cyanide hydratase, conserved site PF550_04120 IPR003010 Carbon-nitrogen hydrolase PF550_04120 IPR022310 NAD/GMP synthase PF550_04120 IPR014445 Glutamine-dependent NAD(+) synthetase PF550_04120 IPR036526 Carbon-nitrogen hydrolase superfamily PF550_04120 IPR003694 NAD(+) synthetase PF550_04130 IPR008778 Pirin, C-terminal domain PF550_04130 IPR003829 Pirin, N-terminal domain PF550_04130 IPR014710 RmlC-like jelly roll fold PF550_04130 IPR011051 RmlC-like cupin domain superfamily PF550_04130 IPR012093 Pirin PF550_04135 IPR005265 Protoporphyrinogen oxidase HemJ-like PF550_04140 IPR000794 Beta-ketoacyl synthase PF550_04140 IPR018201 Beta-ketoacyl synthase, active site PF550_04140 IPR014031 Beta-ketoacyl synthase, C-terminal PF550_04140 IPR014030 Beta-ketoacyl synthase, N-terminal PF550_04140 IPR016039 Thiolase-like PF550_04140 IPR020841 Polyketide synthase, beta-ketoacyl synthase domain PF550_04150 IPR006032 Ribosomal protein S12/S23 PF550_04150 IPR005679 Ribosomal protein S12, bacterial-type PF550_04150 IPR012340 Nucleic acid-binding, OB-fold PF550_04155 IPR000235 Ribosomal protein S5/S7 PF550_04155 IPR005717 Ribosomal protein S7, bacterial/organellar-type PF550_04155 IPR020606 Ribosomal protein S7, conserved site PF550_04155 IPR023798 Ribosomal protein S7 domain PF550_04155 IPR036823 Ribosomal protein S7 domain superfamily PF550_04160 IPR005225 Small GTP-binding protein domain PF550_04160 IPR035647 EF-G domain III/V-like PF550_04160 IPR009022 Elongation factor G, domain III PF550_04160 IPR000640 Elongation factor EFG, domain V-like PF550_04160 IPR004161 Translation elongation factor EFTu-like, domain 2 PF550_04160 IPR031157 Tr-type G domain, conserved site PF550_04160 IPR027417 P-loop containing nucleoside triphosphate hydrolase PF550_04160 IPR000795 Transcription factor, GTP-binding domain PF550_04160 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup PF550_04160 IPR041095 Elongation Factor G, domain II PF550_04160 IPR009000 Translation protein, beta-barrel domain superfamily PF550_04160 IPR004540 Translation elongation factor EFG/EF2 PF550_04160 IPR005517 Translation elongation factor EFG/EF2, domain IV PF550_04160 IPR020568 Ribosomal protein S5 domain 2-type fold PF550_04160 IPR035649 EFG, domain V PF550_04165 IPR004160 Translation elongation factor EFTu/EF1A, C-terminal PF550_04165 IPR005225 Small GTP-binding protein domain PF550_04165 IPR004541 Translation elongation factor EFTu/EF1A, bacterial/organelle PF550_04165 IPR009001 Translation elongation factor EF1A/initiation factor IF2gamma, C-terminal PF550_04165 IPR033720 Elongation factor Tu, domain 2 PF550_04165 IPR000795 Transcription factor, GTP-binding domain PF550_04165 IPR027417 P-loop containing nucleoside triphosphate hydrolase PF550_04165 IPR031157 Tr-type G domain, conserved site PF550_04165 IPR004161 Translation elongation factor EFTu-like, domain 2 PF550_04165 IPR041709 Elongation factor Tu (EF-Tu), GTP-binding domain PF550_04165 IPR009000 Translation protein, beta-barrel domain superfamily PF550_04180 IPR006464 N-acetyltransferase RimI/Ard1 PF550_04180 IPR016181 Acyl-CoA N-acyltransferase PF550_04180 IPR000182 GNAT domain PF550_04185 IPR016181 Acyl-CoA N-acyltransferase PF550_04185 IPR017138 Aspartate/glutamate leucyltransferase PF550_04185 IPR030700 N-end rule aminoacyl transferase PF550_04185 IPR007472 N-end rule aminoacyl transferase, C-terminal PF550_04185 IPR007471 N-end aminoacyl transferase, N-terminal PF550_04190 IPR042203 Leucyl/phenylalanyl-tRNA-protein transferase, C-terminal PF550_04190 IPR016181 Acyl-CoA N-acyltransferase PF550_04190 IPR004616 Leucyl/phenylalanyl-tRNA-protein transferase PF550_04195 IPR036188 FAD/NAD(P)-binding domain superfamily PF550_04195 IPR023753 FAD/NAD(P)-binding domain PF550_04195 IPR008255 Pyridine nucleotide-disulphide oxidoreductase, class-II, active site PF550_04195 IPR005982 Thioredoxin reductase PF550_04200 IPR025199 DNA translocase FtsK, 4TM region PF550_04200 IPR041027 FtsK alpha domain PF550_04200 IPR002543 FtsK domain PF550_04200 IPR036390 Winged helix DNA-binding domain superfamily PF550_04200 IPR036388 Winged helix-like DNA-binding domain superfamily PF550_04200 IPR018541 FtsK gamma domain PF550_04200 IPR027417 P-loop containing nucleoside triphosphate hydrolase PF550_04205 IPR004778 Homoserine/Threonine efflux protein PF550_04205 IPR001123 Amino acid exporter protein, LeuE-type PF550_04215 IPR036707 Cell division topological specificity factor MinE superfamily PF550_04215 IPR005527 Cell division topological specificity factor MinE PF550_04220 IPR002586 CobQ/CobB/MinD/ParA nucleotide binding domain PF550_04220 IPR010223 ATP binding protein MinD, bacterial-type PF550_04220 IPR027417 P-loop containing nucleoside triphosphate hydrolase PF550_04220 IPR025501 ATP binding protein MinD PF550_04225 IPR016098 Cyclase-associated protein CAP/septum formation inhibitor MinC, C-terminal PF550_04225 IPR013033 Septum formation inhibitor MinC PF550_04225 IPR036145 Septum formation inhibitor MinC, C-terminal domain superfamily PF550_04225 IPR005526 Septum formation inhibitor MinC, C-terminal PF550_04235 IPR002123 Phospholipid/glycerol acyltransferase PF550_04240 IPR006664 Outer membrane protein, bacterial PF550_04240 IPR039567 Glycine zipper domain PF550_04240 IPR036737 OmpA-like domain superfamily PF550_04240 IPR006665 OmpA-like domain PF550_04240 IPR006690 Outer membrane protein, OmpA-like, conserved site PF550_04245 IPR013986 DExx box DNA helicase domain superfamily PF550_04245 IPR014017 UvrD-like DNA helicase, C-terminal PF550_04245 IPR000212 DNA helicase, UvrD/REP type PF550_04245 IPR005752 ATP-dependent DNA helicase Rep PF550_04245 IPR027417 P-loop containing nucleoside triphosphate hydrolase PF550_04245 IPR014016 UvrD-like helicase, ATP-binding domain PF550_04245 IPR034739 UvrD/AddA helicase, N-terminal PF550_04250 IPR029054 dUTPase-like PF550_04250 IPR036157 dUTPase-like superfamily PF550_04250 IPR008181 Deoxyuridine triphosphate nucleotidohydrolase PF550_04250 IPR033704 dUTPase, trimeric PF550_04255 IPR005846 Alpha-D-phosphohexomutase, alpha/beta/alpha domain III PF550_04255 IPR036900 Alpha-D-phosphohexomutase, C-terminal domain superfamily PF550_04255 IPR005843 Alpha-D-phosphohexomutase, C-terminal PF550_04255 IPR005844 Alpha-D-phosphohexomutase, alpha/beta/alpha domain I PF550_04255 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III PF550_04255 IPR005845 Alpha-D-phosphohexomutase, alpha/beta/alpha domain II PF550_04255 IPR016066 Alpha-D-phosphohexomutase, conserved site PF550_04255 IPR005841 Alpha-D-phosphohexomutase superfamily PF550_04260 IPR037528 Acetylglutamate kinase ArgB PF550_04260 IPR001048 Aspartate/glutamate/uridylate kinase PF550_04260 IPR004662 Acetylglutamate kinase family PF550_04260 IPR036393 Acetylglutamate kinase-like superfamily PF550_04260 IPR041727 N-Acetyl-L-glutamate kinase, cyclic PF550_04270 IPR017932 Glutamine amidotransferase type 2 domain PF550_04270 IPR029055 Nucleophile aminohydrolases, N-terminal PF550_04270 IPR026869 Putative glutamine amidotransferase type 2 PF550_04275 IPR023504 Bacteriohemerythrin-like protein PF550_04275 IPR012312 Haemerythrin-like PF550_04275 IPR016131 Haemerythrin, iron-binding site PF550_04275 IPR035938 Hemerythrin-like superfamily PF550_04275 IPR012827 Haemerythrin, metal-binding domain PF550_04285 IPR016155 Molybdopterin synthase/thiamin biosynthesis sulphur carrier, beta-grasp PF550_04285 IPR005346 RnfH protein PF550_04285 IPR037021 RnfH superfamily PF550_04290 IPR007450 Lipoprotein SmpA/OmlA PF550_04290 IPR037873 BamE-like PF550_04290 IPR026592 Outer membrane protein assembly factor BamE PF550_04295 IPR002481 Ferric-uptake regulator PF550_04295 IPR036388 Winged helix-like DNA-binding domain superfamily PF550_04295 IPR036390 Winged helix DNA-binding domain superfamily PF550_04300 IPR027417 P-loop containing nucleoside triphosphate hydrolase PF550_04300 IPR006321 Pilus retraction protein PilT PF550_04300 IPR001482 Type II/IV secretion system protein PF550_04305 IPR003593 AAA+ ATPase domain PF550_04305 IPR027417 P-loop containing nucleoside triphosphate hydrolase PF550_04305 IPR006321 Pilus retraction protein PilT PF550_04305 IPR001482 Type II/IV secretion system protein PF550_04310 IPR001608 Alanine racemase, N-terminal PF550_04310 IPR011078 Pyridoxal phosphate homeostasis protein PF550_04310 IPR029066 PLP-binding barrel PF550_04315 IPR027417 P-loop containing nucleoside triphosphate hydrolase PF550_04320 IPR004843 Calcineurin-like phosphoesterase domain, ApaH type PF550_04320 IPR029052 Metallo-dependent phosphatase-like PF550_04320 IPR041796 Mre11 nuclease, N-terminal metallophosphatase domain PF550_04320 IPR004593 Nuclease SbcCD subunit D PF550_04320 IPR026843 Nuclease SbcCD subunit D, C-terminal domain PF550_04340 IPR010099 Epimerase family protein SDR39U1 PF550_04340 IPR013549 Domain of unknown function DUF1731 PF550_04340 IPR036291 NAD(P)-binding domain superfamily PF550_04340 IPR001509 NAD-dependent epimerase/dehydratase PF550_04345 IPR036188 FAD/NAD(P)-binding domain superfamily PF550_04345 IPR006076 FAD dependent oxidoreductase PF550_04345 IPR012727 Glycine oxidase ThiO PF550_04350 IPR013785 Aldolase-type TIM barrel PF550_04350 IPR030656 Delta-aminolevulinic acid dehydratase, active site PF550_04350 IPR001731 Delta-aminolevulinic acid dehydratase PF550_04355 IPR029069 HotDog domain superfamily PF550_04355 IPR006683 Thioesterase domain PF550_04355 IPR003736 Phenylacetic acid degradation-related domain PF550_04360 IPR039562 Membrane fusion protein, biotin-lipoyl like domain PF550_04365 IPR004638 Drug resistance transporter EmrB-like PF550_04365 IPR011701 Major facilitator superfamily PF550_04365 IPR020846 Major facilitator superfamily domain PF550_04365 IPR036259 MFS transporter superfamily PF550_04370 IPR000101 Gamma-glutamyltranspeptidase PF550_04370 IPR029055 Nucleophile aminohydrolases, N-terminal PF550_04380 IPR011010 DNA breaking-rejoining enzyme, catalytic core PF550_04380 IPR013762 Integrase-like, catalytic domain superfamily PF550_04380 IPR002104 Integrase, catalytic domain PF550_04380 IPR038488 Integrase, DNA-binding domain superfamily PF550_04380 IPR025166 Integrase, DNA-binding domain PF550_04380 IPR010998 Integrase/recombinase, N-terminal PF550_04425 IPR000424 Primosome PriB/single-strand DNA-binding PF550_04425 IPR012340 Nucleic acid-binding, OB-fold PF550_04425 IPR011344 Single-stranded DNA-binding protein PF550_04465 IPR024474 Zinc-finger binding domain of transposase IS66 PF550_04465 IPR024463 Transposase TnpC, homeodomain PF550_04465 IPR039552 Transposase IS66, C-terminal PF550_04465 IPR004291 Transposase, IS66 PF550_04475 IPR009057 Homeobox-like domain superfamily PF550_04480 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase PF550_04480 IPR038333 N6 adenine-specific DNA methyltransferase, N-terminal domain superfamily PF550_04480 IPR003356 DNA methylase, adenine-specific PF550_04495 IPR040980 SWI2/SNF2 ATPase PF550_04495 IPR004473 Restriction endonuclease, type I, HsdR PF550_04495 IPR021810 Protein of unknown function DUF3387 PF550_04495 IPR014001 Helicase superfamily 1/2, ATP-binding domain PF550_04495 IPR007409 Restriction endonuclease, type I, HsdR, N-terminal PF550_04495 IPR027417 P-loop containing nucleoside triphosphate hydrolase PF550_04500 IPR022749 N6 adenine-specific DNA methyltransferase, N-terminal domain PF550_04500 IPR038333 N6 adenine-specific DNA methyltransferase, N-terminal domain superfamily PF550_04500 IPR003356 DNA methylase, adenine-specific PF550_04500 IPR002052 DNA methylase, N-6 adenine-specific, conserved site PF550_04500 IPR004546 Restriction endonuclease, type I, HsdM PF550_04500 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase PF550_04530 IPR005829 Sugar transporter, conserved site PF550_04530 IPR036259 MFS transporter superfamily PF550_04530 IPR005828 Major facilitator, sugar transporter-like PF550_04530 IPR020846 Major facilitator superfamily domain PF550_04550 IPR006531 Gp5 N-terminal PF550_04550 IPR028244 Putative type VI secretion system, Rhs element associated Vgr domain PF550_04550 IPR006533 Type VI secretion system, RhsGE-associated Vgr protein PF550_04550 IPR018769 Domain of unknown function DUF2345, Vgr C-terminal PF550_04550 IPR037026 Vgr protein, OB-fold domain superfamily PF550_04550 IPR017847 Type VI secretion system, RhsGE-associated Vgr family subset PF550_04580 IPR004754 Amino acid antiporter PF550_04580 IPR002293 Amino acid/polyamine transporter I PF550_04585 IPR036589 Homocysteine-binding domain superfamily PF550_04585 IPR017226 Betaine-homocysteine S-methyltransferase, BHMT PF550_04585 IPR003726 Homocysteine-binding domain PF550_04595 IPR036188 FAD/NAD(P)-binding domain superfamily PF550_04595 IPR006231 Malate:quinone-oxidoreductase PF550_04600 IPR009057 Homeobox-like domain superfamily PF550_04610 IPR004291 Transposase, IS66 PF550_04610 IPR024463 Transposase TnpC, homeodomain PF550_04610 IPR024474 Zinc-finger binding domain of transposase IS66 PF550_04610 IPR039552 Transposase IS66, C-terminal PF550_04615 IPR000172 Glucose-methanol-choline oxidoreductase, N-terminal PF550_04615 IPR011533 Oxygen-dependent choline dehydrogenase PF550_04615 IPR036188 FAD/NAD(P)-binding domain superfamily PF550_04615 IPR027424 Glucose Oxidase, domain 2 PF550_04615 IPR012132 Glucose-methanol-choline oxidoreductase PF550_04615 IPR007867 Glucose-methanol-choline oxidoreductase, C-terminal PF550_04620 IPR016161 Aldehyde/histidinol dehydrogenase PF550_04620 IPR016163 Aldehyde dehydrogenase, C-terminal PF550_04620 IPR016160 Aldehyde dehydrogenase, cysteine active site PF550_04620 IPR029510 Aldehyde dehydrogenase, glutamic acid active site PF550_04620 IPR016162 Aldehyde dehydrogenase, N-terminal PF550_04620 IPR015590 Aldehyde dehydrogenase domain PF550_04620 IPR011264 Betaine aldehyde dehydrogenase PF550_04625 IPR017757 Transcriptional repressor BetI PF550_04625 IPR001647 DNA-binding HTH domain, TetR-type PF550_04625 IPR036271 Tetracyclin repressor-like, C-terminal domain superfamily PF550_04625 IPR039538 BetI-type transcriptional repressor, C-terminal PF550_04625 IPR009057 Homeobox-like domain superfamily PF550_04630 IPR018093 BCCT transporter, conserved site PF550_04630 IPR000060 BCCT transporter family PF550_04635 IPR018093 BCCT transporter, conserved site PF550_04635 IPR000060 BCCT transporter family PF550_04645 IPR006683 Thioesterase domain PF550_04645 IPR040170 Cytosolic acyl coenzyme A thioester hydrolase PF550_04645 IPR033120 Hotdog acyl-CoA thioesterase (ACOT)-type domain PF550_04645 IPR029069 HotDog domain superfamily PF550_04655 IPR027417 P-loop containing nucleoside triphosphate hydrolase PF550_04655 IPR011629 Cobalamin (vitamin B12) biosynthesis CobW-like, C-terminal PF550_04655 IPR003495 CobW/HypB/UreG, nucleotide-binding domain PF550_04660 IPR023954 C4-dicarboxylate transport protein PF550_04660 IPR001991 Sodium:dicarboxylate symporter PF550_04660 IPR018107 Sodium:dicarboxylate symporter, conserved site PF550_04660 IPR036458 Sodium:dicarboxylate symporter superfamily PF550_04665 IPR038590 YaeQ superfamily PF550_04665 IPR009822 YaeQ PF550_04665 IPR011335 Restriction endonuclease type II-like PF550_04670 IPR001179 FKBP-type peptidyl-prolyl cis-trans isomerase domain PF550_04675 IPR011330 Glycoside hydrolase/deacetylase, beta/alpha-barrel PF550_04675 IPR002509 NodB homology domain PF550_04675 IPR023854 Poly-beta-1,6-N-acetyl-D-glucosamine N-deacetylase PgaB PF550_04675 IPR032772 Poly-beta-1,6-N-acetyl-D-glucosamine N-deacetylase PgaB, C-terminal PF550_04680 IPR001173 Glycosyltransferase 2-like PF550_04680 IPR023853 Poly-beta-1,6 N-acetyl-D-glucosamine synthase PgaC/IcaA PF550_04680 IPR029044 Nucleotide-diphospho-sugar transferases PF550_04690 IPR018376 Enoyl-CoA hydratase/isomerase, conserved site PF550_04690 IPR001753 Enoyl-CoA hydratase/isomerase PF550_04690 IPR014748 Enoyl-CoA hydratase, C-terminal PF550_04690 IPR022852 Carnitinyl-CoA dehydratase PF550_04690 IPR029045 ClpP/crotonase-like domain superfamily PF550_04705 IPR029016 GAF-like domain superfamily PF550_04705 IPR014757 Transcription regulator IclR, C-terminal PF550_04705 IPR005471 Transcription regulator IclR, N-terminal PF550_04705 IPR036388 Winged helix-like DNA-binding domain superfamily PF550_04705 IPR036390 Winged helix DNA-binding domain superfamily PF550_04710 IPR036922 Rieske [2Fe-2S] iron-sulphur domain superfamily PF550_04710 IPR017941 Rieske [2Fe-2S] iron-sulphur domain PF550_04720 IPR036922 Rieske [2Fe-2S] iron-sulphur domain superfamily PF550_04720 IPR017941 Rieske [2Fe-2S] iron-sulphur domain PF550_04725 IPR002347 Short-chain dehydrogenase/reductase SDR PF550_04725 IPR020904 Short-chain dehydrogenase/reductase, conserved site PF550_04725 IPR036291 NAD(P)-binding domain superfamily PF550_04730 IPR037523 Vicinal oxygen chelate (VOC) domain PF550_04730 IPR004360 Glyoxalase/fosfomycin resistance/dioxygenase domain PF550_04730 IPR000486 Extradiol ring-cleavage dioxygenase, class I /II PF550_04730 IPR017626 2,3-dihydroxybiphenyl 1,2-dioxygenase PF550_04730 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase PF550_04735 IPR036188 FAD/NAD(P)-binding domain superfamily PF550_04735 IPR023753 FAD/NAD(P)-binding domain PF550_04735 IPR016156 FAD/NAD-linked reductase, dimerisation domain superfamily PF550_04735 IPR028202 Reductase, C-terminal PF550_04740 IPR020846 Major facilitator superfamily domain PF550_04740 IPR036259 MFS transporter superfamily PF550_04740 IPR000849 Sugar phosphate transporter PF550_04740 IPR011701 Major facilitator superfamily PF550_04750 IPR029058 Alpha/Beta hydrolase fold PF550_04750 IPR000073 Alpha/beta hydrolase fold-1 PF550_04755 IPR036291 NAD(P)-binding domain superfamily PF550_04755 IPR020904 Short-chain dehydrogenase/reductase, conserved site PF550_04755 IPR002347 Short-chain dehydrogenase/reductase SDR PF550_04760 IPR011182 L-aspartate dehydrogenase PF550_04760 IPR005106 Aspartate/homoserine dehydrogenase, NAD-binding PF550_04760 IPR002811 Aspartate dehydrogenase PF550_04760 IPR020626 L-aspartate dehydrogenase, prokaryotic PF550_04760 IPR036291 NAD(P)-binding domain superfamily PF550_04765 IPR011264 Betaine aldehyde dehydrogenase PF550_04765 IPR016162 Aldehyde dehydrogenase, N-terminal PF550_04765 IPR029510 Aldehyde dehydrogenase, glutamic acid active site PF550_04765 IPR015590 Aldehyde dehydrogenase domain PF550_04765 IPR016163 Aldehyde dehydrogenase, C-terminal PF550_04765 IPR016161 Aldehyde/histidinol dehydrogenase PF550_04765 IPR016160 Aldehyde dehydrogenase, cysteine active site PF550_04770 IPR000399 TPP-binding enzyme, conserved site PF550_04770 IPR012001 Thiamine pyrophosphate enzyme, N-terminal TPP-binding domain PF550_04770 IPR012000 Thiamine pyrophosphate enzyme, central domain PF550_04770 IPR011766 Thiamine pyrophosphate enzyme, C-terminal TPP-binding PF550_04770 IPR029035 DHS-like NAD/FAD-binding domain superfamily PF550_04770 IPR039368 Acetolactate synthase large subunit, TPP binding domain PF550_04770 IPR012846 Acetolactate synthase, large subunit, biosynthetic PF550_04770 IPR029061 Thiamin diphosphate-binding fold PF550_04780 IPR011701 Major facilitator superfamily PF550_04780 IPR020846 Major facilitator superfamily domain PF550_04780 IPR036259 MFS transporter superfamily PF550_04780 IPR005829 Sugar transporter, conserved site PF550_04785 IPR023635 Peptide deformylase PF550_04785 IPR036821 Peptide deformylase superfamily PF550_04790 IPR012338 Beta-lactamase/transpeptidase-like PF550_04790 IPR002645 STAS domain PF550_04790 IPR015868 Glutaminase PF550_04790 IPR036513 STAS domain superfamily PF550_04795 IPR020449 Transcription regulator HTH, AraC- type PF550_04795 IPR003313 AraC-type arabinose-binding/dimerisation domain PF550_04795 IPR009057 Homeobox-like domain superfamily PF550_04795 IPR037923 Transcription regulator HTH-like PF550_04795 IPR018062 HTH domain AraC-type, conserved site PF550_04795 IPR018060 DNA binding HTH domain, AraC-type PF550_04800 IPR036259 MFS transporter superfamily PF550_04800 IPR020846 Major facilitator superfamily domain PF550_04800 IPR011701 Major facilitator superfamily PF550_04805 IPR015443 Aldose 1-epimerase PF550_04805 IPR011013 Galactose mutarotase-like domain superfamily PF550_04805 IPR008183 Aldose 1-/Glucose-6-phosphate 1-epimerase PF550_04805 IPR018052 Aldose 1-epimerase, conserved site PF550_04805 IPR014718 Glycoside hydrolase-type carbohydrate-binding PF550_04815 IPR000847 Transcription regulator HTH, LysR PF550_04815 IPR036388 Winged helix-like DNA-binding domain superfamily PF550_04815 IPR036390 Winged helix DNA-binding domain superfamily PF550_04815 IPR005119 LysR, substrate-binding PF550_04820 IPR036291 NAD(P)-binding domain superfamily PF550_04820 IPR020904 Short-chain dehydrogenase/reductase, conserved site PF550_04820 IPR002347 Short-chain dehydrogenase/reductase SDR PF550_04825 IPR011701 Major facilitator superfamily PF550_04825 IPR020846 Major facilitator superfamily domain PF550_04825 IPR036259 MFS transporter superfamily PF550_04830 IPR029061 Thiamin diphosphate-binding fold PF550_04830 IPR005474 Transketolase, N-terminal PF550_04835 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II PF550_04835 IPR033248 Transketolase, C-terminal domain PF550_04835 IPR005475 Transketolase-like, pyrimidine-binding domain PF550_04835 IPR029061 Thiamin diphosphate-binding fold PF550_04840 IPR036724 Cobalamin-binding domain superfamily PF550_04840 IPR003759 Cobalamin (vitamin B12)-binding module, cap domain PF550_04840 IPR011822 Cobalamin-dependent methionine synthase PF550_04840 IPR036589 Homocysteine-binding domain superfamily PF550_04840 IPR036594 Methionine synthase domain PF550_04840 IPR000489 Pterin-binding domain PF550_04840 IPR004223 Vitamin B12-dependent methionine synthase, activation domain PF550_04840 IPR037010 Vitamin B12-dependent methionine synthase, activation domain superfamily PF550_04840 IPR003726 Homocysteine-binding domain PF550_04840 IPR011005 Dihydropteroate synthase-like PF550_04840 IPR006158 Cobalamin (vitamin B12)-binding domain PF550_04840 IPR033706 Methionine synthase, B12-binding domain PF550_04845 IPR001204 Phosphate transporter PF550_04850 IPR011780 D-serine ammonia-lyase PF550_04850 IPR001926 Pyridoxal-phosphate dependent enzyme PF550_04850 IPR000634 Serine/threonine dehydratase, pyridoxal-phosphate-binding site PF550_04850 IPR036052 Tryptophan synthase beta subunit-like PLP-dependent enzyme PF550_04865 IPR016187 C-type lectin fold PF550_04865 IPR005532 Sulfatase-modifying factor enzyme PF550_04865 IPR042095 Sulfatase-modifying factor enzyme superfamily PF550_04870 IPR017850 Alkaline-phosphatase-like, core domain superfamily PF550_04870 IPR024607 Sulfatase, conserved site PF550_04870 IPR000917 Sulfatase, N-terminal PF550_04880 IPR035903 HesB-like domain superfamily PF550_04880 IPR001075 NIF system FeS cluster assembly, NifU, C-terminal PF550_04880 IPR034904 Fe-S cluster assembly domain superfamily PF550_04880 IPR000361 FeS cluster biogenesis PF550_04880 IPR017726 Fe/S biogenesis protein NfuA PF550_04890 IPR039426 Vitamin B12 transporter BtuB-like PF550_04890 IPR036942 TonB-dependent receptor-like, beta-barrel domain superfamily PF550_04890 IPR010917 TonB-dependent receptor, conserved site PF550_04890 IPR000531 TonB-dependent receptor-like, beta-barrel PF550_04890 IPR037066 TonB-dependent receptor, plug domain superfamily PF550_04890 IPR012910 TonB-dependent receptor, plug domain PF550_04890 IPR010105 TonB-dependent siderophore receptor PF550_04900 IPR000639 Epoxide hydrolase-like PF550_04900 IPR000073 Alpha/beta hydrolase fold-1 PF550_04900 IPR029058 Alpha/Beta hydrolase fold PF550_04905 IPR001765 Carbonic anhydrase PF550_04905 IPR036874 Carbonic anhydrase superfamily PF550_04905 IPR015892 Carbonic anhydrase, prokaryotic-like, conserved site PF550_04910 IPR036514 SGNH hydrolase superfamily PF550_04910 IPR013830 SGNH hydrolase-type esterase domain PF550_04915 IPR027417 P-loop containing nucleoside triphosphate hydrolase PF550_04915 IPR003593 AAA+ ATPase domain PF550_04915 IPR003439 ABC transporter-like PF550_04915 IPR017871 ABC transporter, conserved site PF550_04920 IPR038766 Membrane component of ABC transporter, predicted PF550_04925 IPR022764 Peptidase S54, rhomboid domain PF550_04925 IPR035952 Rhomboid-like superfamily PF550_04930 IPR011812 Biosynthetic peptidoglycan transglycosylase PF550_04930 IPR023346 Lysozyme-like domain superfamily PF550_04930 IPR036950 Penicillin binding protein transglycosylase domain PF550_04930 IPR001264 Glycosyl transferase, family 51 PF550_04935 IPR025198 Polyphosphate kinase N-terminal domain PF550_04935 IPR025200 Polyphosphate kinase C-terminal domain 2 PF550_04935 IPR003414 Polyphosphate kinase PF550_04935 IPR036830 Polyphosphate kinase middle domain superfamily PF550_04935 IPR024953 Polyphosphate kinase middle domain PF550_04935 IPR036832 Polyphosphate kinase N-terminal domain superfamily PF550_04935 IPR041108 Polyphosphate kinase, C-terminal domain 1 PF550_04950 IPR005119 LysR, substrate-binding PF550_04950 IPR000847 Transcription regulator HTH, LysR PF550_04950 IPR036388 Winged helix-like DNA-binding domain superfamily PF550_04950 IPR036390 Winged helix DNA-binding domain superfamily PF550_04955 IPR000073 Alpha/beta hydrolase fold-1 PF550_04955 IPR011942 Poly(3-hydroxyalkanoate) depolymerase PF550_04955 IPR029058 Alpha/Beta hydrolase fold PF550_04960 IPR036188 FAD/NAD(P)-binding domain superfamily PF550_04960 IPR023753 FAD/NAD(P)-binding domain PF550_04960 IPR041364 Rubredoxin binding domain PF550_04965 IPR024922 Rubredoxin PF550_04965 IPR024934 Rubredoxin-like domain PF550_04965 IPR024935 Rubredoxin domain PF550_04965 IPR018527 Rubredoxin, iron-binding site PF550_04980 IPR004364 Aminoacyl-tRNA synthetase, class II (D/K/N) PF550_04980 IPR006195 Aminoacyl-tRNA synthetase, class II PF550_04980 IPR002313 Lysine-tRNA ligase, class II PF550_04980 IPR018149 Lysyl-tRNA synthetase, class II, C-terminal PF550_04980 IPR012340 Nucleic acid-binding, OB-fold PF550_04980 IPR004365 OB-fold nucleic acid binding domain, AA-tRNA synthetase-type PF550_04985 IPR026950 Capsule assembly protein Wzi PF550_04985 IPR038636 Capsule assembly protein Wzi superfamily PF550_04995 IPR011784 Sulphate adenylyltransferase, small subunit PF550_04995 IPR002500 Phosphoadenosine phosphosulphate reductase PF550_04995 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold PF550_05000 IPR009000 Translation protein, beta-barrel domain superfamily PF550_05000 IPR009001 Translation elongation factor EF1A/initiation factor IF2gamma, C-terminal PF550_05000 IPR000795 Transcription factor, GTP-binding domain PF550_05000 IPR011779 Sulphate adenylyltransferase, large subunit PF550_05000 IPR002891 Adenylyl-sulfate kinase PF550_05000 IPR027417 P-loop containing nucleoside triphosphate hydrolase PF550_05000 IPR031157 Tr-type G domain, conserved site PF550_05000 IPR041757 Sulfate adenylyltransferase subunit CysN, GTP-binding domain PF550_05000 IPR005225 Small GTP-binding protein domain PF550_05015 IPR004680 Citrate transporter-like domain PF550_05015 IPR014738 Citrate transporter PF550_05020 IPR002550 CNNM, transmembrane domain PF550_05020 IPR036318 FAD-binding, type PCMH-like superfamily PF550_05020 IPR016169 FAD-binding, type PCMH, subdomain 2 PF550_05020 IPR005170 Transporter-associated domain PF550_05020 IPR000644 CBS domain PF550_05025 IPR005119 LysR, substrate-binding PF550_05025 IPR000847 Transcription regulator HTH, LysR PF550_05025 IPR036388 Winged helix-like DNA-binding domain superfamily PF550_05025 IPR036390 Winged helix DNA-binding domain superfamily PF550_05030 IPR039556 ICL/PEPM domain PF550_05030 IPR006254 Isocitrate lyase PF550_05030 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain superfamily PF550_05030 IPR040442 Pyruvate kinase-like domain superfamily PF550_05045 IPR002669 Urease accessory protein UreD PF550_05050 IPR012010 Urease, gamma subunit PF550_05050 IPR002026 Urease, gamma/gamma-beta subunit PF550_05050 IPR036463 Urease, gamma subunit superfamily PF550_05055 IPR002019 Urease, beta subunit PF550_05055 IPR036461 Urease, beta subunit superfamily PF550_05060 IPR017951 Urease alpha subunit, C-terminal PF550_05060 IPR011612 Urease alpha-subunit, N-terminal domain PF550_05060 IPR005848 Urease, alpha subunit PF550_05060 IPR029754 Urease nickel binding site PF550_05060 IPR017950 Urease active site PF550_05060 IPR006680 Amidohydrolase-related PF550_05060 IPR032466 Metal-dependent hydrolase PF550_05060 IPR011059 Metal-dependent hydrolase, composite domain superfamily PF550_05065 IPR012406 Urease accessory protein UreE PF550_05065 IPR007864 Urease accessory protein UreE, C-terminal domain PF550_05065 IPR036675 UreE, C-terminal domain superfamily PF550_05065 IPR004029 UreE urease accessory, N-terminal PF550_05065 IPR036118 UreE urease accessory, N-terminal domain superfamily PF550_05070 IPR038277 UreF domain superfamily PF550_05070 IPR002639 Urease accessory protein UreF PF550_05075 IPR004400 Urease accessory protein UreG PF550_05075 IPR027417 P-loop containing nucleoside triphosphate hydrolase PF550_05075 IPR003495 CobW/HypB/UreG, nucleotide-binding domain PF550_05085 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase PF550_05085 IPR002052 DNA methylase, N-6 adenine-specific, conserved site PF550_05085 IPR004398 RNA methyltransferase, RsmD PF550_05090 IPR017790 Penicillin-binding protein 2 PF550_05090 IPR001460 Penicillin-binding protein, transpeptidase PF550_05090 IPR036138 Penicillin-binding protein, dimerisation domain superfamily PF550_05090 IPR012338 Beta-lactamase/transpeptidase-like PF550_05090 IPR005311 Penicillin-binding protein, dimerisation domain PF550_05105 IPR006259 Adenylate kinase subfamily PF550_05105 IPR000850 Adenylate kinase/UMP-CMP kinase PF550_05105 IPR033690 Adenylate kinase, conserved site PF550_05105 IPR007862 Adenylate kinase, active site lid domain PF550_05105 IPR027417 P-loop containing nucleoside triphosphate hydrolase PF550_05115 IPR004035 Endonuclease III, iron-sulphur binding site PF550_05115 IPR005759 Endonuclease III PF550_05115 IPR023170 Helix-turn-helix, base-excision DNA repair, C-terminal PF550_05115 IPR000445 Helix-hairpin-helix motif PF550_05115 IPR003265 HhH-GPD domain PF550_05115 IPR003651 Endonuclease III-like, iron-sulphur cluster loop motif PF550_05115 IPR004036 Endonuclease III-like, conserved site-2 PF550_05115 IPR011257 DNA glycosylase PF550_05120 IPR016463 Electron transport complex, RnfB/RsxB, Proteobacteria PF550_05120 IPR007202 4Fe-4S domain PF550_05120 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain PF550_05120 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site PF550_05120 IPR011005 Dihydropteroate synthase-like PF550_05120 IPR010207 Ion-translocating oxidoreductase complex, RnfB/RsxB PF550_05125 IPR033922 NAD(P) binding domain of glutamate dehydrogenase PF550_05125 IPR036291 NAD(P)-binding domain superfamily PF550_05125 IPR014362 Glutamate dehydrogenase PF550_05125 IPR033524 Leu/Phe/Val dehydrogenases active site PF550_05125 IPR006096 Glutamate/phenylalanine/leucine/valine dehydrogenase, C-terminal PF550_05125 IPR006095 Glutamate/phenylalanine/leucine/valine dehydrogenase PF550_05125 IPR006097 Glutamate/phenylalanine/leucine/valine dehydrogenase, dimerisation domain PF550_05135 IPR014436 Extradiol aromatic ring-opening dioxygenase, DODA-type PF550_05135 IPR004183 Extradiol ring-cleavage dioxygenase, class III enzyme, subunit B PF550_05140 IPR029028 Alpha/beta knot methyltransferases PF550_05140 IPR003742 RNA methyltransferase RlmH PF550_05140 IPR029026 tRNA (guanine-N1-)-methyltransferase, N-terminal PF550_05145 IPR008269 Peptidase S16, Lon proteolytic domain PF550_05145 IPR003593 AAA+ ATPase domain PF550_05145 IPR003959 ATPase, AAA-type, core PF550_05145 IPR027543 Lon protease, bacterial PF550_05145 IPR004815 Lon protease, bacterial/eukaryotic-type PF550_05145 IPR027065 Lon protease PF550_05145 IPR003111 Lon, substrate-binding domain PF550_05145 IPR027417 P-loop containing nucleoside triphosphate hydrolase PF550_05145 IPR008268 Peptidase S16, active site PF550_05145 IPR015947 PUA-like superfamily PF550_05145 IPR020568 Ribosomal protein S5 domain 2-type fold PF550_05145 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup PF550_05150 IPR008640 Head domain of trimeric autotransporter adhesin PF550_05150 IPR008635 Coiled stalk of trimeric autotransporter adhesin PF550_05150 IPR024973 ESPR domain PF550_05150 IPR011049 Serralysin-like metalloprotease, C-terminal PF550_05150 IPR005594 YadA-like, C-terminal PF550_05155 IPR036737 OmpA-like domain superfamily PF550_05155 IPR007450 Lipoprotein SmpA/OmlA PF550_05155 IPR037873 BamE-like PF550_05155 IPR006664 Outer membrane protein, bacterial PF550_05155 IPR006665 OmpA-like domain PF550_05160 IPR037171 NagB/RpiA transferase-like PF550_05160 IPR024185 5-formyltetrahydrofolate cyclo-ligase-like domain superfamily PF550_05160 IPR002698 5-formyltetrahydrofolate cyclo-ligase PF550_05470 IPR024474 Zinc-finger binding domain of transposase IS66 PF550_05470 IPR024463 Transposase TnpC, homeodomain PF550_05470 IPR004291 Transposase, IS66 PF550_05470 IPR039552 Transposase IS66, C-terminal PF550_05480 IPR009057 Homeobox-like domain superfamily PF550_05490 IPR004291 Transposase, IS66 PF550_05490 IPR039552 Transposase IS66, C-terminal PF550_05490 IPR024463 Transposase TnpC, homeodomain PF550_05490 IPR024474 Zinc-finger binding domain of transposase IS66 PF550_05500 IPR009057 Homeobox-like domain superfamily PF550_05520 IPR029026 tRNA (guanine-N1-)-methyltransferase, N-terminal PF550_05520 IPR013123 RNA 2-O ribose methyltransferase, substrate binding PF550_05520 IPR029064 50S ribosomal protein L30e-like PF550_05520 IPR029028 Alpha/beta knot methyltransferases PF550_05520 IPR001537 tRNA/rRNA methyltransferase, SpoU type PF550_05525 IPR000146 Fructose-1,6-bisphosphatase class 1 PF550_05525 IPR033391 Fructose-1-6-bisphosphatase class I, N-terminal PF550_05525 IPR028343 Fructose-1,6-bisphosphatase PF550_05535 IPR006664 Outer membrane protein, bacterial PF550_05535 IPR006665 OmpA-like domain PF550_05535 IPR006690 Outer membrane protein, OmpA-like, conserved site PF550_05535 IPR036737 OmpA-like domain superfamily PF550_05535 IPR039001 Peptidoglycan-associated lipoprotein PF550_05535 IPR014169 Peptidoglycan-associated lipoprotein, C-terminal PF550_05540 IPR036752 TolB, N-terminal domain superfamily PF550_05540 IPR007195 TolB, N-terminal PF550_05540 IPR014167 Tol-Pal system protein TolB PF550_05540 IPR011042 Six-bladed beta-propeller, TolB-like PF550_05540 IPR011659 WD40-like Beta Propeller PF550_05550 IPR003400 Biopolymer transport protein ExbD/TolR PF550_05550 IPR014168 Tol-Pal system protein TolR PF550_05555 IPR002898 MotA/TolQ/ExbB proton channel PF550_05555 IPR014163 Tol-Pal system, TolQ PF550_05560 IPR008272 4-hydroxybenzoyl-CoA thioesterase, active site PF550_05560 IPR029069 HotDog domain superfamily PF550_05560 IPR006683 Thioesterase domain PF550_05560 IPR014166 Tol-Pal system-associated acyl-CoA thioesterase PF550_05560 IPR006684 Acyl-CoA thioester hydrolase YbgC/YbaW family PF550_05565 IPR011650 Peptidase M20, dimerisation domain PF550_05565 IPR017439 Amidohydrolase PF550_05565 IPR036264 Bacterial exopeptidase dimerisation domain PF550_05565 IPR002933 Peptidase M20 PF550_05570 IPR003593 AAA+ ATPase domain PF550_05570 IPR041445 RuvB, AAA lid domain PF550_05570 IPR004605 DNA helicase, Holliday junction RuvB-type PF550_05570 IPR027417 P-loop containing nucleoside triphosphate hydrolase PF550_05570 IPR008824 RuvB-like P-loop domain PF550_05570 IPR008823 RuvB C-terminal winged helix domain PF550_05570 IPR036388 Winged helix-like DNA-binding domain superfamily PF550_05570 IPR036390 Winged helix DNA-binding domain superfamily PF550_05575 IPR036267 RuvA, C-terminal domain superfamily PF550_05575 IPR011114 Holliday junction DNA helicase RuvA, C-terminal PF550_05575 IPR010994 RuvA domain 2-like PF550_05575 IPR013849 DNA helicase, Holliday junction RuvA type, domain I, bacterial PF550_05575 IPR012340 Nucleic acid-binding, OB-fold PF550_05575 IPR003583 Helix-hairpin-helix DNA-binding motif, class 1 PF550_05575 IPR000085 Bacterial DNA recombination protein RuvA PF550_05580 IPR003607 HD/PDEase domain PF550_05580 IPR006674 HD domain PF550_05580 IPR023024 dNTP triphosphohydrolase, type 3 PF550_05580 IPR006261 dNTP triphosphohydrolase PF550_05580 IPR027432 Deoxyguanosinetriphosphate triphosphohydrolase, C-terminal PF550_05580 IPR023293 Deoxyguanosinetriphosphate triphosphohydrolase, central domain superfamily PF550_05585 IPR040707 Phosphoribosylformylglycinamidine synthase, N-terminal PF550_05585 IPR029062 Class I glutamine amidotransferase-like PF550_05585 IPR036604 Phosphoribosylformylglycinamidine synthase subunit PurS-like superfamily PF550_05585 IPR036921 PurM-like, N-terminal domain superfamily PF550_05585 IPR010918 PurM-like, C-terminal domain PF550_05585 IPR041609 Phosphoribosylformylglycinamidine synthase, linker domain PF550_05585 IPR010073 Phosphoribosylformylglycinamidine synthase PurL PF550_05585 IPR036676 PurM-like, C-terminal domain superfamily PF550_05585 IPR017926 Glutamine amidotransferase PF550_05590 IPR004812 Drug resistance transporter Bcr/CmlA subfamily PF550_05590 IPR011701 Major facilitator superfamily PF550_05590 IPR020846 Major facilitator superfamily domain PF550_05590 IPR036259 MFS transporter superfamily PF550_05600 IPR015867 Nitrogen regulatory protein PII/ATP phosphoribosyltransferase, C-terminal PF550_05600 IPR017221 GTP cyclohydrolase 1 type 2//Nif3, bacteria PF550_05600 IPR002678 GTP cyclohydrolase 1 type 2/Nif3 PF550_05600 IPR036069 GTP cyclohydrolase 1 type 2/Nif3 superfamily PF550_05605 IPR029045 ClpP/crotonase-like domain superfamily PF550_05605 IPR001753 Enoyl-CoA hydratase/isomerase PF550_05605 IPR011968 Phenylacetate degradation probable enoyl-CoA hydratase PaaB PF550_05605 IPR014748 Enoyl-CoA hydratase, C-terminal PF550_05610 IPR004821 Cytidyltransferase-like domain PF550_05610 IPR041750 Bifunctional NMN adenylyltransferase/Nudix hydrolase, N-terminal NMNAT domain PF550_05610 IPR015797 NUDIX hydrolase-like domain superfamily PF550_05610 IPR020084 NUDIX hydrolase, conserved site PF550_05610 IPR000086 NUDIX hydrolase domain PF550_05610 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold PF550_05620 IPR000866 Alkyl hydroperoxide reductase subunit C/ Thiol specific antioxidant PF550_05620 IPR036249 Thioredoxin-like superfamily PF550_05620 IPR013766 Thioredoxin domain PF550_05635 IPR018317 Queuosine biosynthesis protein QueC PF550_05635 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold PF550_05640 IPR013785 Aldolase-type TIM barrel PF550_05640 IPR024924 7-carboxy-7-deazaguanine synthase-like PF550_05640 IPR007197 Radical SAM PF550_05645 IPR005664 Tetrahydrodipicolinate N-succinyltransferase, transferase hexapeptide repeat family PF550_05645 IPR001451 Hexapeptide repeat PF550_05645 IPR018357 Hexapeptide transferase, conserved site PF550_05645 IPR023180 Tetrahydrodipicolinate-N-succinyltransferase, chain A, domain 1 PF550_05645 IPR037133 Tetrahydrodipicolinate-N-succinyltransferase, N-terminal domain superfamily PF550_05645 IPR011004 Trimeric LpxA-like superfamily PF550_05655 IPR037423 HTH-type transcriptional regulator CysB, PBP2 domain PF550_05655 IPR005119 LysR, substrate-binding PF550_05655 IPR000847 Transcription regulator HTH, LysR PF550_05655 IPR036388 Winged helix-like DNA-binding domain superfamily PF550_05655 IPR036390 Winged helix DNA-binding domain superfamily PF550_05660 IPR003593 AAA+ ATPase domain PF550_05660 IPR014769 ABC transporter, sulphate/thiosulphate import, ATP-binding protein CysA, C-terminal PF550_05660 IPR003439 ABC transporter-like PF550_05660 IPR017871 ABC transporter, conserved site PF550_05660 IPR008995 Molybdate/tungstate binding, C-terminal PF550_05660 IPR027417 P-loop containing nucleoside triphosphate hydrolase PF550_05660 IPR005666 Sulphate transport system permease protein 1 PF550_05660 IPR024765 TOBE-like domain PF550_05665 IPR000515 ABC transporter type 1, transmembrane domain MetI-like PF550_05665 IPR011866 Sulphate ABC transporter, permease protein CysW PF550_05665 IPR035906 MetI-like superfamily PF550_05665 IPR005667 Sulphate ABC transporter permease protein 2 PF550_05670 IPR035906 MetI-like superfamily PF550_05670 IPR000515 ABC transporter type 1, transmembrane domain MetI-like PF550_05670 IPR005667 Sulphate ABC transporter permease protein 2 PF550_05670 IPR011865 Sulphate ABC transporter, permease protein CysT PF550_05680 IPR000957 Sulphate/thiosulphate-binding, conserved site PF550_05680 IPR034408 Sulphate/thiosulphate-binding site PF550_05680 IPR005669 Thiosulphate/Sulfate-binding protein PF550_05685 IPR017824 Aminodeoxychorismate lyase, class IV PF550_05685 IPR001544 Aminotransferase class IV PF550_05685 IPR036038 Aminotransferase-like, PLP-dependent enzymes PF550_05685 IPR018300 Aminotransferase, class IV, conserved site PF550_05690 IPR003770 Endolytic murein transglycosylase PF550_05695 IPR027417 P-loop containing nucleoside triphosphate hydrolase PF550_05695 IPR039430 Thymidylate kinase-like domain PF550_05695 IPR018094 Thymidylate kinase PF550_05705 IPR015939 Fumarate reductase/succinate dehydrogenase flavoprotein-like, C-terminal PF550_05705 IPR003953 FAD-dependent oxidoreductase 2, FAD binding domain PF550_05705 IPR036188 FAD/NAD(P)-binding domain superfamily PF550_05705 IPR037099 Fumarate reductase/succinate dehydrogenase flavoprotein-like, C-terminal domain superfamily PF550_05705 IPR005288 L-aspartate oxidase PF550_05705 IPR027477 Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain superfamily PF550_05710 IPR009003 Peptidase S1, PA clan PF550_05710 IPR011782 Peptidase S1C, Do PF550_05710 IPR001940 Peptidase S1C PF550_05710 IPR001478 PDZ domain PF550_05710 IPR036034 PDZ superfamily PF550_05720 IPR027417 P-loop containing nucleoside triphosphate hydrolase PF550_05720 IPR000795 Transcription factor, GTP-binding domain PF550_05720 IPR005225 Small GTP-binding protein domain PF550_05720 IPR035654 Elongation factor 4, domain IV PF550_05720 IPR013842 GTP-binding protein LepA, C-terminal PF550_05720 IPR000640 Elongation factor EFG, domain V-like PF550_05720 IPR035647 EF-G domain III/V-like PF550_05720 IPR006297 Elongation factor 4 PF550_05720 IPR038363 LepA, C-terminal domain superfamily PF550_05720 IPR004161 Translation elongation factor EFTu-like, domain 2 PF550_05720 IPR031157 Tr-type G domain, conserved site PF550_05725 IPR036286 LexA/Signal peptidase-like superfamily PF550_05725 IPR000223 Peptidase S26A, signal peptidase I PF550_05725 IPR019758 Peptidase S26A, signal peptidase I, conserved site PF550_05725 IPR019757 Peptidase S26A, signal peptidase I, lysine active site PF550_05725 IPR019756 Peptidase S26A, signal peptidase I, serine active site PF550_05725 IPR019533 Peptidase S26 PF550_05735 IPR036389 Ribonuclease III, endonuclease domain superfamily PF550_05735 IPR000999 Ribonuclease III domain PF550_05735 IPR014720 Double-stranded RNA-binding domain PF550_05735 IPR011907 Ribonuclease III PF550_05740 IPR005662 GTP-binding protein Era PF550_05740 IPR005225 Small GTP-binding protein domain PF550_05740 IPR027417 P-loop containing nucleoside triphosphate hydrolase PF550_05740 IPR009019 K homology domain superfamily, prokaryotic type PF550_05740 IPR030388 Era-type guanine nucleotide-binding (G) domain PF550_05740 IPR015946 K homology domain-like, alpha/beta PF550_05740 IPR006073 GTP binding domain PF550_05740 IPR004044 K Homology domain, type 2 PF550_05750 IPR037278 ARFGAP/RecO-like zinc finger PF550_05750 IPR012340 Nucleic acid-binding, OB-fold PF550_05750 IPR003717 Recombination protein O, RecO PF550_05750 IPR022572 DNA replication/recombination mediator RecO, N-terminal PF550_05755 IPR013785 Aldolase-type TIM barrel PF550_05755 IPR004569 Pyridoxal phosphate (active vitamin B6) biosynthesis PdxJ PF550_05755 IPR036130 Pyridoxine 5'-phosphate synthase PF550_05760 IPR010386 tRNA-hydroxylase MiaE PF550_05760 IPR012347 Ferritin-like PF550_05760 IPR009078 Ferritin-like superfamily PF550_05765 IPR002347 Short-chain dehydrogenase/reductase SDR PF550_05765 IPR036291 NAD(P)-binding domain superfamily PF550_05765 IPR020904 Short-chain dehydrogenase/reductase, conserved site PF550_05795 IPR018181 Heat shock protein 70, conserved site PF550_05795 IPR042030 Chaperone protein HscC, nucleotide-binding domain PF550_05795 IPR029047 Heat shock protein 70kD, peptide-binding domain superfamily PF550_05795 IPR013126 Heat shock protein 70 family PF550_05805 IPR004839 Aminotransferase, class I/classII PF550_05805 IPR004838 Aminotransferases, class-I, pyridoxal-phosphate-binding site PF550_05805 IPR015424 Pyridoxal phosphate-dependent transferase PF550_05805 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 PF550_05805 IPR015421 Pyridoxal phosphate-dependent transferase, major domain PF550_05815 IPR029787 Nucleotide cyclase PF550_05815 IPR000160 GGDEF domain PF550_05815 IPR033416 Periplasmic sensor domain CHASE7 PF550_05825 IPR006935 Helicase/UvrB, N-terminal PF550_05825 IPR014001 Helicase superfamily 1/2, ATP-binding domain PF550_05825 IPR001650 Helicase, C-terminal PF550_05825 IPR027417 P-loop containing nucleoside triphosphate hydrolase PF550_05825 IPR001943 UVR domain PF550_05825 IPR036876 UVR domain superfamily PF550_05825 IPR004807 UvrABC system, subunit B PF550_05825 IPR041471 UvrB, interaction domain PF550_05825 IPR024759 UvrB, YAD/RRR-motif-containing domain PF550_05835 IPR000620 EamA domain PF550_05835 IPR004626 RarD protein PF550_05840 IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family PF550_05840 IPR020830 Glyceraldehyde 3-phosphate dehydrogenase, active site PF550_05840 IPR020829 Glyceraldehyde 3-phosphate dehydrogenase, catalytic domain PF550_05840 IPR020828 Glyceraldehyde 3-phosphate dehydrogenase, NAD(P) binding domain PF550_05840 IPR006424 Glyceraldehyde-3-phosphate dehydrogenase, type I PF550_05840 IPR036291 NAD(P)-binding domain superfamily PF550_05855 IPR027417 P-loop containing nucleoside triphosphate hydrolase PF550_05855 IPR006073 GTP binding domain PF550_05855 IPR036726 GTP1/OBG domain superfamily PF550_05855 IPR006074 GTP1/OBG, conserved site PF550_05855 IPR014100 GTP-binding protein Obg/CgtA PF550_05855 IPR035101 GTP-binding protein, Obg-type PF550_05855 IPR031167 OBG-type guanine nucleotide-binding (G) domain PF550_05855 IPR006169 GTP1/OBG domain PF550_05860 IPR002478 PUA domain PF550_05860 IPR036974 PUA domain superfamily PF550_05860 IPR015947 PUA-like superfamily PF550_05860 IPR019797 Glutamate 5-kinase, conserved site PF550_05860 IPR036393 Acetylglutamate kinase-like superfamily PF550_05860 IPR011529 Glutamate 5-kinase PF550_05860 IPR001057 Glutamate/acetylglutamate kinase PF550_05860 IPR041739 Glutamate-5-kinase domain PF550_05860 IPR001048 Aspartate/glutamate/uridylate kinase PF550_05860 IPR005715 Glutamate 5-kinase/delta-1-pyrroline-5-carboxylate synthase PF550_05870 IPR011673 Protein of unknown function DUF1615 PF550_05875 IPR001269 tRNA-dihydrouridine synthase PF550_05875 IPR018517 tRNA-dihydrouridine synthase, conserved site PF550_05875 IPR004652 tRNA-dihydrouridine synthase, TIM-barrel, NifR3 PF550_05875 IPR013785 Aldolase-type TIM barrel PF550_05875 IPR032887 tRNA-dihydrouridine synthase B PF550_05875 IPR035587 DUS-like, FMN-binding domain PF550_05875 IPR024036 tRNA-dihydrouridine synthase, putative, C-terminal PF550_05880 IPR013785 Aldolase-type TIM barrel PF550_05880 IPR004136 Nitronate monooxygenase PF550_05895 IPR029767 UDP-N-acetylglucosamine 2-epimerase WecB-like PF550_05895 IPR003331 UDP-N-acetylglucosamine 2-epimerase domain PF550_05910 IPR029044 Nucleotide-diphospho-sugar transferases PF550_05925 IPR036134 Cryptochrome/DNA photolyase, FAD-binding domain-like superfamily PF550_05925 IPR036155 Cryptochrome/photolyase, N-terminal domain superfamily PF550_05925 IPR005101 Cryptochrome/DNA photolyase, FAD-binding domain PF550_05925 IPR002081 Cryptochrome/DNA photolyase class 1 PF550_05925 IPR018394 Cryptochrome/DNA photolyase class 1, conserved site, C-terminal PF550_05925 IPR006050 DNA photolyase, N-terminal PF550_05925 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold PF550_05930 IPR001179 FKBP-type peptidyl-prolyl cis-trans isomerase domain PF550_05935 IPR023753 FAD/NAD(P)-binding domain PF550_05935 IPR036188 FAD/NAD(P)-binding domain superfamily PF550_05940 IPR012907 Peptidase S11, D-Ala-D-Ala carboxypeptidase A, C-terminal PF550_05940 IPR037167 D-Ala-D-Ala carboxypeptidase, C-terminal domain superfamily PF550_05940 IPR018044 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A PF550_05940 IPR015956 Penicillin-binding protein, C-terminal domain superfamily PF550_05940 IPR001967 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A, N-terminal PF550_05940 IPR012338 Beta-lactamase/transpeptidase-like PF550_05950 IPR004436 Isocitrate dehydrogenase NADP-dependent, monomeric PF550_05955 IPR042092 Pseudouridine synthase, RsuA/RluB/E/F, catalytic domain PF550_05955 IPR020103 Pseudouridine synthase, catalytic domain superfamily PF550_05955 IPR006145 Pseudouridine synthase, RsuA/RluA PF550_05955 IPR000748 Pseudouridine synthase, RsuA/RluB/E/F PF550_05955 IPR018496 Pseudouridine synthase, RsuA/RluB/E/F, conserved site PF550_05960 IPR024084 Isopropylmalate dehydrogenase-like domain PF550_05960 IPR004439 Isocitrate dehydrogenase NADP-dependent, dimeric, prokaryotic PF550_05960 IPR019818 Isocitrate/isopropylmalate dehydrogenase, conserved site PF550_05980 IPR036259 MFS transporter superfamily PF550_05980 IPR010645 Uncharacterised MFS-type transporter YbfB PF550_05985 IPR005119 LysR, substrate-binding PF550_05985 IPR000847 Transcription regulator HTH, LysR PF550_05985 IPR036388 Winged helix-like DNA-binding domain superfamily PF550_05985 IPR036390 Winged helix DNA-binding domain superfamily PF550_05990 IPR001991 Sodium:dicarboxylate symporter PF550_05990 IPR036458 Sodium:dicarboxylate symporter superfamily PF550_05995 IPR003719 Phenazine biosynthesis PhzF protein PF550_06000 IPR007863 Peptidase M16, C-terminal PF550_06000 IPR011249 Metalloenzyme, LuxS/M16 peptidase-like PF550_06000 IPR011765 Peptidase M16, N-terminal PF550_06000 IPR001431 Peptidase M16, zinc-binding site PF550_06025 IPR004291 Transposase, IS66 PF550_06025 IPR024463 Transposase TnpC, homeodomain PF550_06025 IPR039552 Transposase IS66, C-terminal PF550_06025 IPR024474 Zinc-finger binding domain of transposase IS66 PF550_06035 IPR009057 Homeobox-like domain superfamily PF550_06045 IPR022998 Thiamine phosphate synthase/TenI PF550_06045 IPR036206 Thiamin phosphate synthase superfamily PF550_06045 IPR034291 Thiamine phosphate synthase PF550_06045 IPR013785 Aldolase-type TIM barrel PF550_06050 IPR005814 Aminotransferase class-III PF550_06050 IPR015424 Pyridoxal phosphate-dependent transferase PF550_06050 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 PF550_06050 IPR015421 Pyridoxal phosphate-dependent transferase, major domain PF550_06050 IPR004639 Tetrapyrrole biosynthesis, glutamate-1-semialdehyde aminotransferase PF550_06060 IPR020103 Pseudouridine synthase, catalytic domain superfamily PF550_06060 IPR006224 Pseudouridine synthase, RluC/RluD, conserved site PF550_06060 IPR006145 Pseudouridine synthase, RsuA/RluA PF550_06065 IPR040766 RapA, N-terminal Tudor-like domain 2 PF550_06065 IPR000330 SNF2-related, N-terminal domain PF550_06065 IPR040765 RapA, N-terminal Tudor like domain 1 PF550_06065 IPR027417 P-loop containing nucleoside triphosphate hydrolase PF550_06065 IPR022737 RNA polymerase recycling, bacterial, C-terminal PF550_06065 IPR014001 Helicase superfamily 1/2, ATP-binding domain PF550_06065 IPR038718 SNF2-like, N-terminal domain superfamily PF550_06065 IPR023949 RNA polymerase-associated protein RapA PF550_06065 IPR001650 Helicase, C-terminal PF550_06075 IPR009057 Homeobox-like domain superfamily PF550_06075 IPR001647 DNA-binding HTH domain, TetR-type PF550_06075 IPR023764 Transcriptional repressor HTH, FabR PF550_06080 IPR036010 2Fe-2S ferredoxin-like superfamily PF550_06080 IPR012675 Beta-grasp domain superfamily PF550_06080 IPR008333 Flavoprotein pyridine nucleotide cytochrome reductase-like, FAD-binding domain PF550_06080 IPR017927 FAD-binding domain, ferredoxin reductase-type PF550_06080 IPR039261 Ferredoxin-NADP reductase (FNR), nucleotide-binding domain PF550_06080 IPR017938 Riboflavin synthase-like beta-barrel PF550_06080 IPR000951 Phthalate dioxygenase reductase PF550_06080 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain PF550_06080 IPR001433 Oxidoreductase FAD/NAD(P)-binding PF550_06085 IPR005804 Fatty acid desaturase domain PF550_06090 IPR003680 Flavodoxin-like fold PF550_06090 IPR029039 Flavoprotein-like superfamily PF550_06105 IPR005814 Aminotransferase class-III PF550_06105 IPR004637 2,4-diaminobutyrate 4-transaminase PF550_06105 IPR015421 Pyridoxal phosphate-dependent transferase, major domain PF550_06105 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 PF550_06105 IPR015424 Pyridoxal phosphate-dependent transferase PF550_06110 IPR021115 Pyridoxal-phosphate binding site PF550_06110 IPR002129 Pyridoxal phosphate-dependent decarboxylase PF550_06110 IPR015424 Pyridoxal phosphate-dependent transferase PF550_06110 IPR015421 Pyridoxal phosphate-dependent transferase, major domain PF550_06115 IPR016161 Aldehyde/histidinol dehydrogenase PF550_06115 IPR015590 Aldehyde dehydrogenase domain PF550_06115 IPR016162 Aldehyde dehydrogenase, N-terminal PF550_06115 IPR029510 Aldehyde dehydrogenase, glutamic acid active site PF550_06115 IPR016160 Aldehyde dehydrogenase, cysteine active site PF550_06115 IPR016163 Aldehyde dehydrogenase, C-terminal PF550_06120 IPR000485 AsnC-type HTH domain PF550_06120 IPR011991 ArsR-like helix-turn-helix domain PF550_06120 IPR019888 Transcription regulator AsnC-type PF550_06120 IPR019885 Transcription regulator HTH, AsnC-type, conserved site PF550_06120 IPR036388 Winged helix-like DNA-binding domain superfamily PF550_06120 IPR036390 Winged helix DNA-binding domain superfamily PF550_06120 IPR011008 Dimeric alpha-beta barrel PF550_06120 IPR019887 Transcription regulator AsnC/Lrp, ligand binding domain PF550_06125 IPR029035 DHS-like NAD/FAD-binding domain superfamily PF550_06125 IPR029061 Thiamin diphosphate-binding fold PF550_06125 IPR012000 Thiamine pyrophosphate enzyme, central domain PF550_06125 IPR011766 Thiamine pyrophosphate enzyme, C-terminal TPP-binding PF550_06125 IPR012110 Thiamine pyrophosphate (TPP)-dependent enzyme PF550_06125 IPR012001 Thiamine pyrophosphate enzyme, N-terminal TPP-binding domain PF550_06130 IPR004841 Amino acid permease/ SLC12A domain PF550_06130 IPR004840 Amino acid permease, conserved site PF550_06135 IPR024370 PBP domain PF550_06135 IPR011862 Phosphate binding protein PF550_06140 IPR011864 Phosphate ABC transporter, permease protein PstC PF550_06140 IPR035906 MetI-like superfamily PF550_06140 IPR000515 ABC transporter type 1, transmembrane domain MetI-like PF550_06145 IPR035906 MetI-like superfamily PF550_06145 IPR000515 ABC transporter type 1, transmembrane domain MetI-like PF550_06145 IPR005672 Phosphate transport system permease protein PstA PF550_06150 IPR017871 ABC transporter, conserved site PF550_06150 IPR015850 ABC transporter, phosphate import, PstB PF550_06150 IPR027417 P-loop containing nucleoside triphosphate hydrolase PF550_06150 IPR005670 Phosphate transport system permease protein 1 PF550_06150 IPR003439 ABC transporter-like PF550_06150 IPR003593 AAA+ ATPase domain PF550_06155 IPR013703 Peptidase S49, N-terminal proteobacteria PF550_06155 IPR002142 Peptidase S49 PF550_06155 IPR029045 ClpP/crotonase-like domain superfamily PF550_06170 IPR024083 Fumarase/histidase, N-terminal PF550_06170 IPR000362 Fumarate lyase family PF550_06170 IPR022761 Fumarate lyase, N-terminal PF550_06170 IPR013539 Adenylosuccinate lyase PurB, C-terminal PF550_06170 IPR020557 Fumarate lyase, conserved site PF550_06170 IPR004769 Adenylosuccinate lyase PF550_06170 IPR008948 L-Aspartase-like PF550_06175 IPR007451 High frequency lysogenization protein HflD PF550_06175 IPR035932 HflD-like superfamily PF550_06180 IPR004506 tRNA-specific 2-thiouridylase PF550_06180 IPR023382 Adenine nucleotide alpha hydrolase-like domains PF550_06180 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold PF550_06185 IPR006357 HAD-superfamily hydrolase, subfamily IIA PF550_06185 IPR023214 HAD superfamily PF550_06185 IPR000086 NUDIX hydrolase domain PF550_06185 IPR020084 NUDIX hydrolase, conserved site PF550_06185 IPR015797 NUDIX hydrolase-like domain superfamily PF550_06185 IPR020476 NUDIX hydrolase PF550_06185 IPR036412 HAD-like superfamily PF550_06190 IPR001451 Hexapeptide repeat PF550_06190 IPR011004 Trimeric LpxA-like superfamily PF550_06195 IPR037167 D-Ala-D-Ala carboxypeptidase, C-terminal domain superfamily PF550_06195 IPR001967 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A, N-terminal PF550_06195 IPR012907 Peptidase S11, D-Ala-D-Ala carboxypeptidase A, C-terminal PF550_06195 IPR018044 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A PF550_06195 IPR015956 Penicillin-binding protein, C-terminal domain superfamily PF550_06195 IPR012338 Beta-lactamase/transpeptidase-like PF550_06210 IPR036523 SurE-like phosphatase/nucleotidase superfamily PF550_06210 IPR002828 Survival protein SurE-like phosphatase/nucleotidase PF550_06210 IPR030048 Survival protein SurE PF550_06215 IPR036779 LysM domain superfamily PF550_06215 IPR018392 LysM domain PF550_06215 IPR011055 Duplicated hybrid motif PF550_06215 IPR016047 Peptidase M23 PF550_06220 IPR036388 Winged helix-like DNA-binding domain superfamily PF550_06220 IPR000847 Transcription regulator HTH, LysR PF550_06220 IPR036390 Winged helix DNA-binding domain superfamily PF550_06220 IPR005119 LysR, substrate-binding PF550_06225 IPR027065 Lon protease PF550_06225 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup PF550_06225 IPR008269 Peptidase S16, Lon proteolytic domain PF550_06225 IPR041699 Lon protease, AAA domain PF550_06225 IPR020568 Ribosomal protein S5 domain 2-type fold PF550_06230 IPR004752 AmpG-like permease/Acetyl-coenzyme A transporter 1 PF550_06230 IPR011701 Major facilitator superfamily PF550_06230 IPR020846 Major facilitator superfamily domain PF550_06230 IPR036259 MFS transporter superfamily PF550_06235 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase PF550_06235 IPR004360 Glyoxalase/fosfomycin resistance/dioxygenase domain PF550_06235 IPR037523 Vicinal oxygen chelate (VOC) domain PF550_06235 IPR018146 Glyoxalase I, conserved site PF550_06235 IPR004361 Glyoxalase I PF550_06240 IPR016833 Putative sodium bile acid cotransporter PF550_06240 IPR038770 Sodium/solute symporter superfamily PF550_06245 IPR034704 L28p-like PF550_06245 IPR002150 Ribosomal protein L31 PF550_06245 IPR042105 Ribosomal protein L31 superfamily PF550_06245 IPR027491 Ribosomal protein L31 type A PF550_06250 IPR024744 Putative cyclic diguanylate phosphodiesterase, CSS motif-containing domain PF550_06250 IPR001633 EAL domain PF550_06250 IPR035919 EAL domain superfamily PF550_06260 IPR003739 Lysine-2,3-aminomutase/glutamate 2,3-aminomutase PF550_06260 IPR007197 Radical SAM PF550_06260 IPR022462 Lysine-2,3-aminomutase-like PF550_06260 IPR013785 Aldolase-type TIM barrel PF550_06265 IPR008991 Translation protein SH3-like domain superfamily PF550_06265 IPR020599 Translation elongation factor P/YeiP PF550_06265 IPR011768 Translation elongation factor P PF550_06265 IPR001059 Translation elongation factor P/YeiP, central PF550_06265 IPR015365 Elongation factor P, C-terminal PF550_06265 IPR013185 Translation elongation factor, KOW-like PF550_06265 IPR014722 Ribosomal protein L2, domain 2 PF550_06265 IPR012340 Nucleic acid-binding, OB-fold PF550_06270 IPR025299 CstA, C-terminal domain PF550_06270 IPR003706 CstA, N-terminal domain PF550_06275 IPR007423 Selenoprotein, putative PF550_06300 IPR002347 Short-chain dehydrogenase/reductase SDR PF550_06300 IPR036291 NAD(P)-binding domain superfamily PF550_06325 IPR036380 Isochorismatase-like superfamily PF550_06325 IPR000868 Isochorismatase-like PF550_06330 IPR036390 Winged helix DNA-binding domain superfamily PF550_06330 IPR036388 Winged helix-like DNA-binding domain superfamily PF550_06330 IPR000847 Transcription regulator HTH, LysR PF550_06330 IPR005119 LysR, substrate-binding PF550_06340 IPR020946 Flavin monooxygenase-like PF550_06340 IPR036188 FAD/NAD(P)-binding domain superfamily PF550_06345 IPR000073 Alpha/beta hydrolase fold-1 PF550_06345 IPR029058 Alpha/Beta hydrolase fold PF550_06345 IPR000639 Epoxide hydrolase-like PF550_06355 IPR017829 Hopanoid-associated sugar epimerase PF550_06355 IPR001509 NAD-dependent epimerase/dehydratase PF550_06355 IPR036291 NAD(P)-binding domain superfamily PF550_06360 IPR032687 HTH-type transcriptional regulator AraC-type, N-terminal PF550_06360 IPR009057 Homeobox-like domain superfamily PF550_06360 IPR018060 DNA binding HTH domain, AraC-type PF550_06360 IPR020449 Transcription regulator HTH, AraC- type PF550_06365 IPR036388 Winged helix-like DNA-binding domain superfamily PF550_06365 IPR005119 LysR, substrate-binding PF550_06365 IPR036390 Winged helix DNA-binding domain superfamily PF550_06365 IPR000847 Transcription regulator HTH, LysR PF550_06370 IPR013785 Aldolase-type TIM barrel PF550_06370 IPR023663 NADPH dehydrogenase PF550_06370 IPR001155 NADH:flavin oxidoreductase/NADH oxidase, N-terminal PF550_06375 IPR029149 Creatinase/Aminopeptidase P/Spt16, N-terminal PF550_06375 IPR036005 Creatinase/aminopeptidase-like PF550_06375 IPR000994 Peptidase M24 PF550_06380 IPR005829 Sugar transporter, conserved site PF550_06380 IPR005828 Major facilitator, sugar transporter-like PF550_06380 IPR036259 MFS transporter superfamily PF550_06380 IPR020846 Major facilitator superfamily domain PF550_06385 IPR018093 BCCT transporter, conserved site PF550_06385 IPR000060 BCCT transporter family PF550_06390 IPR017941 Rieske [2Fe-2S] iron-sulphur domain PF550_06390 IPR015881 Aromatic-ring-hydroxylating dioxygenase, 2Fe-2S-binding site PF550_06390 IPR001663 Aromatic-ring-hydroxylating dioxygenase, alpha subunit PF550_06390 IPR015879 Aromatic-ring-hydroxylating dioxygenase, alpha subunit, C-terminal domain PF550_06390 IPR036922 Rieske [2Fe-2S] iron-sulphur domain superfamily PF550_06395 IPR029510 Aldehyde dehydrogenase, glutamic acid active site PF550_06395 IPR016161 Aldehyde/histidinol dehydrogenase PF550_06395 IPR016163 Aldehyde dehydrogenase, C-terminal PF550_06395 IPR011264 Betaine aldehyde dehydrogenase PF550_06395 IPR015590 Aldehyde dehydrogenase domain PF550_06395 IPR016162 Aldehyde dehydrogenase, N-terminal PF550_06395 IPR016160 Aldehyde dehydrogenase, cysteine active site PF550_06405 IPR041364 Rubredoxin binding domain PF550_06405 IPR036188 FAD/NAD(P)-binding domain superfamily PF550_06405 IPR023753 FAD/NAD(P)-binding domain PF550_06410 IPR036188 FAD/NAD(P)-binding domain superfamily PF550_06410 IPR006076 FAD dependent oxidoreductase PF550_06410 IPR023032 tRNA 5-methylaminomethyl-2-thiouridine biosynthesis bifunctional protein MnmC PF550_06410 IPR008471 MnmC-like methyltransferase PF550_06410 IPR017610 tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal PF550_06430 IPR000620 EamA domain PF550_06440 IPR036165 YefM-like superfamily PF550_06440 IPR006442 Type II toxin-antitoxin system, antitoxin Phd/YefM PF550_06445 IPR020846 Major facilitator superfamily domain PF550_06445 IPR005829 Sugar transporter, conserved site PF550_06445 IPR005828 Major facilitator, sugar transporter-like PF550_06445 IPR036259 MFS transporter superfamily PF550_06445 IPR003663 Sugar/inositol transporter PF550_06450 IPR034620 cis-3-Hydroxy-L-proline dehydratase PF550_06450 IPR036849 Enolase-like, C-terminal domain superfamily PF550_06450 IPR029017 Enolase-like, N-terminal PF550_06450 IPR013342 Mandelate racemase/muconate lactonizing enzyme, C-terminal PF550_06450 IPR013341 Mandelate racemase/muconate lactonizing enzyme, N-terminal domain PF550_06450 IPR029065 Enolase C-terminal domain-like PF550_06460 IPR009057 Homeobox-like domain superfamily PF550_06470 IPR039552 Transposase IS66, C-terminal PF550_06470 IPR004291 Transposase, IS66 PF550_06470 IPR024463 Transposase TnpC, homeodomain PF550_06470 IPR024474 Zinc-finger binding domain of transposase IS66 PF550_06480 IPR036271 Tetracyclin repressor-like, C-terminal domain superfamily PF550_06480 IPR001647 DNA-binding HTH domain, TetR-type PF550_06480 IPR009057 Homeobox-like domain superfamily PF550_06500 IPR012093 Pirin PF550_06500 IPR003829 Pirin, N-terminal domain PF550_06500 IPR041602 Quercetin 2,3-dioxygenase, C-terminal cupin domain PF550_06500 IPR014710 RmlC-like jelly roll fold PF550_06500 IPR011051 RmlC-like cupin domain superfamily PF550_06505 IPR036052 Tryptophan synthase beta subunit-like PLP-dependent enzyme PF550_06505 IPR000634 Serine/threonine dehydratase, pyridoxal-phosphate-binding site PF550_06505 IPR001926 Pyridoxal-phosphate dependent enzyme PF550_06510 IPR039446 Transcriptional regulator DauR-like PF550_06510 IPR039445 Transcriptional regulator DauR-like, HTH domain PF550_06510 IPR013559 YheO-like PF550_06520 IPR023213 Chloramphenicol acetyltransferase-like domain superfamily PF550_06520 IPR042099 AMP-dependent synthetase-like superfamily PF550_06520 IPR000873 AMP-dependent synthetase/ligase PF550_06520 IPR020845 AMP-binding, conserved site PF550_06520 IPR025110 AMP-binding enzyme, C-terminal domain PF550_06520 IPR006162 Phosphopantetheine attachment site PF550_06520 IPR010071 Amino acid adenylation domain PF550_06520 IPR020806 Polyketide synthase, phosphopantetheine-binding domain PF550_06520 IPR009081 Phosphopantetheine binding ACP domain PF550_06520 IPR010060 Non-ribosomal peptide synthase PF550_06520 IPR036736 ACP-like superfamily PF550_06520 IPR001242 Condensation domain PF550_06525 IPR010071 Amino acid adenylation domain PF550_06525 IPR036736 ACP-like superfamily PF550_06525 IPR029058 Alpha/Beta hydrolase fold PF550_06525 IPR001031 Thioesterase PF550_06525 IPR009081 Phosphopantetheine binding ACP domain PF550_06525 IPR020802 Polyketide synthase, thioesterase domain PF550_06525 IPR020806 Polyketide synthase, phosphopantetheine-binding domain PF550_06525 IPR001242 Condensation domain PF550_06525 IPR042099 AMP-dependent synthetase-like superfamily PF550_06525 IPR023213 Chloramphenicol acetyltransferase-like domain superfamily PF550_06525 IPR025110 AMP-binding enzyme, C-terminal domain PF550_06525 IPR000873 AMP-dependent synthetase/ligase PF550_06525 IPR020845 AMP-binding, conserved site PF550_06530 IPR037294 ABC transporter, BtuC-like PF550_06530 IPR000522 ABC transporter, permease protein, BtuC-like PF550_06535 IPR037294 ABC transporter, BtuC-like PF550_06535 IPR000522 ABC transporter, permease protein, BtuC-like PF550_06540 IPR003593 AAA+ ATPase domain PF550_06540 IPR017871 ABC transporter, conserved site PF550_06540 IPR027417 P-loop containing nucleoside triphosphate hydrolase PF550_06540 IPR003439 ABC transporter-like PF550_06545 IPR002491 ABC transporter periplasmic binding domain PF550_06545 IPR033870 FatB domain PF550_06550 IPR010916 TonB box, conserved site PF550_06550 IPR010917 TonB-dependent receptor, conserved site PF550_06550 IPR036942 TonB-dependent receptor-like, beta-barrel domain superfamily PF550_06550 IPR010105 TonB-dependent siderophore receptor PF550_06550 IPR037066 TonB-dependent receptor, plug domain superfamily PF550_06550 IPR039423 TonB-dependent receptor-like PF550_06550 IPR000531 TonB-dependent receptor-like, beta-barrel PF550_06550 IPR030149 TonB-dependent siderophore receptor FcuA/FatA PF550_06550 IPR012910 TonB-dependent receptor, plug domain PF550_06555 IPR036188 FAD/NAD(P)-binding domain superfamily PF550_06555 IPR025700 L-lysine 6-monooxygenase/L-ornithine 5-monooxygenase PF550_06555 IPR031043 Putative histamine N-monooxygenase PF550_06560 IPR006162 Phosphopantetheine attachment site PF550_06560 IPR009081 Phosphopantetheine binding ACP domain PF550_06560 IPR020806 Polyketide synthase, phosphopantetheine-binding domain PF550_06560 IPR042099 AMP-dependent synthetase-like superfamily PF550_06560 IPR000873 AMP-dependent synthetase/ligase PF550_06560 IPR020845 AMP-binding, conserved site PF550_06560 IPR036736 ACP-like superfamily PF550_06560 IPR029058 Alpha/Beta hydrolase fold PF550_06560 IPR010071 Amino acid adenylation domain PF550_06560 IPR023213 Chloramphenicol acetyltransferase-like domain superfamily PF550_06560 IPR001242 Condensation domain PF550_06565 IPR025110 AMP-binding enzyme, C-terminal domain PF550_06565 IPR020845 AMP-binding, conserved site PF550_06565 IPR000873 AMP-dependent synthetase/ligase PF550_06565 IPR042099 AMP-dependent synthetase-like superfamily PF550_06565 IPR011963 2,3-dihydroxybenzoate-AMP ligase PF550_06570 IPR016291 Isochorismatase PF550_06570 IPR036736 ACP-like superfamily PF550_06570 IPR000868 Isochorismatase-like PF550_06570 IPR036380 Isochorismatase-like superfamily PF550_06570 IPR009081 Phosphopantetheine binding ACP domain PF550_06575 IPR015424 Pyridoxal phosphate-dependent transferase PF550_06575 IPR023523 Histidine decarboxylase, bacteria PF550_06575 IPR002129 Pyridoxal phosphate-dependent decarboxylase PF550_06575 IPR015421 Pyridoxal phosphate-dependent transferase, major domain PF550_06575 IPR021115 Pyridoxal-phosphate binding site PF550_06580 IPR003439 ABC transporter-like PF550_06580 IPR014223 ABC transporter, CydDC cysteine exporter (CydDC-E) family, permease/ATP-binding protein CydC PF550_06580 IPR011527 ABC transporter type 1, transmembrane domain PF550_06580 IPR036640 ABC transporter type 1, transmembrane domain superfamily PF550_06580 IPR027417 P-loop containing nucleoside triphosphate hydrolase PF550_06580 IPR003593 AAA+ ATPase domain PF550_06585 IPR003439 ABC transporter-like PF550_06585 IPR017871 ABC transporter, conserved site PF550_06585 IPR027417 P-loop containing nucleoside triphosphate hydrolase PF550_06585 IPR036640 ABC transporter type 1, transmembrane domain superfamily PF550_06585 IPR003593 AAA+ ATPase domain PF550_06585 IPR011527 ABC transporter type 1, transmembrane domain PF550_06590 IPR029058 Alpha/Beta hydrolase fold PF550_06590 IPR012223 Thioesterase type II, NRPS/PKS/S-FAS PF550_06590 IPR001031 Thioesterase PF550_06595 IPR003542 Enterobactin synthetase-like, component D PF550_06595 IPR037143 4'-phosphopantetheinyl transferase domain superfamily PF550_06595 IPR008278 4'-phosphopantetheinyl transferase domain PF550_06595 IPR041354 4'-phosphopantetheinyl transferase, N-terminal domain PF550_06600 IPR005801 ADC synthase PF550_06600 IPR015890 Chorismate-utilising enzyme, C-terminal PF550_06600 IPR004561 Isochorismate synthase PF550_06610 IPR006361 Uroporphyrinogen decarboxylase HemE PF550_06610 IPR038071 UROD/MetE-like superfamily PF550_06610 IPR000257 Uroporphyrinogen decarboxylase (URO-D) PF550_06615 IPR008535 Protein of unknown function DUF817 PF550_06630 IPR009057 Homeobox-like domain superfamily PF550_06640 IPR024474 Zinc-finger binding domain of transposase IS66 PF550_06640 IPR024463 Transposase TnpC, homeodomain PF550_06640 IPR039552 Transposase IS66, C-terminal PF550_06640 IPR004291 Transposase, IS66 PF550_06650 IPR001466 Beta-lactamase-related PF550_06650 IPR012338 Beta-lactamase/transpeptidase-like PF550_06650 IPR001586 Beta-lactamase, class-C active site PF550_06660 IPR001474 GTP cyclohydrolase I PF550_06660 IPR018234 GTP cyclohydrolase I, conserved site PF550_06660 IPR020602 GTP cyclohydrolase I domain PF550_06665 IPR002888 [2Fe-2S]-binding PF550_06665 IPR036884 [2Fe-2S]-binding domain superfamily PF550_06665 IPR036010 2Fe-2S ferredoxin-like superfamily PF550_06665 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain PF550_06665 IPR006058 2Fe-2S ferredoxin, iron-sulphur binding site PF550_06665 IPR012675 Beta-grasp domain superfamily PF550_06670 IPR008274 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding PF550_06670 IPR037165 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding domain superfamily PF550_06670 IPR000674 Aldehyde oxidase/xanthine dehydrogenase, a/b hammerhead PF550_06670 IPR036856 Aldehyde oxidase/xanthine dehydrogenase, a/b hammerhead superfamily PF550_06685 IPR013785 Aldolase-type TIM barrel PF550_06685 IPR013798 Indole-3-glycerol phosphate synthase PF550_06685 IPR001468 Indole-3-glycerol phosphate synthase, conserved site PF550_06685 IPR011060 Ribulose-phosphate binding barrel PF550_06690 IPR005940 Anthranilate phosphoribosyl transferase PF550_06690 IPR000312 Glycosyl transferase, family 3 PF550_06690 IPR017459 Glycosyl transferase family 3, N-terminal domain PF550_06690 IPR035902 Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain superfamily PF550_06690 IPR036320 Glycosyl transferase family 3, N-terminal domain superfamily PF550_06695 IPR010917 TonB-dependent receptor, conserved site PF550_06695 IPR036942 TonB-dependent receptor-like, beta-barrel domain superfamily PF550_06695 IPR039426 Vitamin B12 transporter BtuB-like PF550_06695 IPR010916 TonB box, conserved site PF550_06695 IPR000531 TonB-dependent receptor-like, beta-barrel PF550_06695 IPR012910 TonB-dependent receptor, plug domain PF550_06695 IPR010101 TonB-dependent vitamin B12 transporter BtuB PF550_06695 IPR037066 TonB-dependent receptor, plug domain superfamily PF550_06700 IPR042097 Aminopeptidase N-like , N-terminal PF550_06700 IPR024571 ERAP1-like C-terminal domain PF550_06700 IPR034016 Aminopeptidase N-type PF550_06700 IPR001930 Peptidase M1, alanine aminopeptidase/leukotriene A4 hydrolase PF550_06700 IPR014782 Peptidase M1, membrane alanine aminopeptidase PF550_06705 IPR029062 Class I glutamine amidotransferase-like PF550_06705 IPR017926 Glutamine amidotransferase PF550_06705 IPR006221 Anthranilate synthase/para-aminobenzoate synthase like domain PF550_06860 IPR003497 BRO N-terminal domain PF550_06860 IPR018876 Bacteriophage P22, antirepressor protein, C-terminal PF550_07035 IPR008258 Transglycosylase SLT domain 1 PF550_07035 IPR000189 Prokaryotic transglycosylase, active site PF550_07035 IPR010090 Phage tail tape measure protein PF550_07035 IPR011055 Duplicated hybrid motif PF550_07035 IPR023346 Lysozyme-like domain superfamily PF550_07035 IPR016047 Peptidase M23 PF550_07090 IPR017850 Alkaline-phosphatase-like, core domain superfamily PF550_07090 IPR012549 Phosphoethanolamine transferase, N-terminal PF550_07090 IPR040423 Phosphoethanolamine transferase PF550_07090 IPR000917 Sulfatase, N-terminal PF550_07125 IPR036005 Creatinase/aminopeptidase-like PF550_07125 IPR007865 Aminopeptidase P, N-terminal PF550_07125 IPR029149 Creatinase/Aminopeptidase P/Spt16, N-terminal PF550_07125 IPR000994 Peptidase M24 PF550_07125 IPR001131 Peptidase M24B, X-Pro dipeptidase/aminopeptidase P, conserved site PF550_07125 IPR001714 Peptidase M24, methionine aminopeptidase PF550_07130 IPR002938 FAD-binding domain PF550_07130 IPR036188 FAD/NAD(P)-binding domain superfamily PF550_07130 IPR018168 Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6, conserved site PF550_07130 IPR011295 2-polyprenyl-6-methoxyphenol 4-hydroxylase PF550_07130 IPR010971 Ubiquinone biosynthesis hydroxylase UbiH/COQ6 PF550_07135 IPR002938 FAD-binding domain PF550_07135 IPR036188 FAD/NAD(P)-binding domain superfamily PF550_07135 IPR018168 Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6, conserved site PF550_07135 IPR010971 Ubiquinone biosynthesis hydroxylase UbiH/COQ6 PF550_07145 IPR009061 Putative DNA-binding domain superfamily PF550_07145 IPR000551 MerR-type HTH domain PF550_07145 IPR011794 Hg(II)-responsive transcriptional regulator PF550_07155 IPR023445 Arginine exporter protein ArgO, enterobacteria PF550_07155 IPR001123 Amino acid exporter protein, LeuE-type PF550_07155 IPR004777 L-lysine exporter/arginine exporter PF550_07160 IPR000847 Transcription regulator HTH, LysR PF550_07160 IPR036390 Winged helix DNA-binding domain superfamily PF550_07160 IPR017685 HTH-type transcriptional regulator ArgP PF550_07160 IPR023490 HTH-type transcriptional regulator ArgP, Gammaproteobacteria PF550_07160 IPR005119 LysR, substrate-binding PF550_07160 IPR036388 Winged helix-like DNA-binding domain superfamily PF550_07170 IPR018063 SAM-dependent methyltransferase RsmI, conserved site PF550_07170 IPR014776 Tetrapyrrole methylase, subdomain 2 PF550_07170 IPR008189 rRNA small subunit methyltransferase I PF550_07170 IPR035996 Tetrapyrrole methylase superfamily PF550_07170 IPR014777 Tetrapyrrole methylase, subdomain 1 PF550_07170 IPR000878 Tetrapyrrole methylase PF550_07175 IPR003509 Uncharacterised protein family UPF0102 PF550_07175 IPR011335 Restriction endonuclease type II-like PF550_07175 IPR011856 tRNA endonuclease-like domain superfamily PF550_07180 IPR007055 BON domain PF550_07180 IPR014004 Transport-associated and nodulation domain, bacteria PF550_07190 IPR022925 NADH pyrophosphatase NudC PF550_07190 IPR015797 NUDIX hydrolase-like domain superfamily PF550_07190 IPR020084 NUDIX hydrolase, conserved site PF550_07190 IPR000086 NUDIX hydrolase domain PF550_07190 IPR015376 Zinc ribbon, NADH pyrophosphatase PF550_07200 IPR036397 Ribonuclease H superfamily PF550_07200 IPR012337 Ribonuclease H-like superfamily PF550_07200 IPR006054 DNA polymerase III epsilon subunit, exonuclease domain PF550_07200 IPR006309 DNA polymerase 3, epsilon subunit PF550_07200 IPR013520 Exonuclease, RNase T/DNA polymerase III PF550_07205 IPR036779 LysM domain superfamily PF550_07205 IPR008258 Transglycosylase SLT domain 1 PF550_07205 IPR000189 Prokaryotic transglycosylase, active site PF550_07205 IPR023346 Lysozyme-like domain superfamily PF550_07205 IPR018392 LysM domain PF550_07205 IPR023346 Lysozyme-like domain superfamily PF550_07205 IPR000189 Prokaryotic transglycosylase, active site PF550_07205 IPR036779 LysM domain superfamily PF550_07205 IPR018392 LysM domain PF550_07205 IPR008258 Transglycosylase SLT domain 1 PF550_07210 IPR030678 Peptide/nickel binding protein, MppA-type PF550_07210 IPR039424 Solute-binding protein family 5 PF550_07210 IPR000914 Solute-binding protein family 5 domain PF550_07215 IPR000515 ABC transporter type 1, transmembrane domain MetI-like PF550_07215 IPR035906 MetI-like superfamily PF550_07220 IPR000515 ABC transporter type 1, transmembrane domain MetI-like PF550_07220 IPR035906 MetI-like superfamily PF550_07220 IPR025966 Oligopeptide transport permease C-like, N-terminal domain PF550_07225 IPR027417 P-loop containing nucleoside triphosphate hydrolase PF550_07225 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal PF550_07225 IPR003439 ABC transporter-like PF550_07225 IPR003593 AAA+ ATPase domain PF550_07225 IPR017871 ABC transporter, conserved site PF550_07230 IPR013785 Aldolase-type TIM barrel PF550_07230 IPR036188 FAD/NAD(P)-binding domain superfamily PF550_07230 IPR023753 FAD/NAD(P)-binding domain PF550_07230 IPR001155 NADH:flavin oxidoreductase/NADH oxidase, N-terminal PF550_07235 IPR012910 TonB-dependent receptor, plug domain PF550_07235 IPR037066 TonB-dependent receptor, plug domain superfamily PF550_07235 IPR039423 TonB-dependent receptor-like PF550_07235 IPR000531 TonB-dependent receptor-like, beta-barrel PF550_07235 IPR036942 TonB-dependent receptor-like, beta-barrel domain superfamily PF550_07235 IPR010105 TonB-dependent siderophore receptor PF550_07245 IPR036397 Ribonuclease H superfamily PF550_07245 IPR012337 Ribonuclease H-like superfamily PF550_07245 IPR005987 Ribonuclease T PF550_07245 IPR013520 Exonuclease, RNase T/DNA polymerase III PF550_07250 IPR006680 Amidohydrolase-related PF550_07250 IPR004721 Dihydroorotase homodimeric type PF550_07250 IPR002195 Dihydroorotase, conserved site PF550_07250 IPR032466 Metal-dependent hydrolase PF550_07270 IPR023437 Argininosuccinate synthase, type 2 subfamily PF550_07270 IPR001518 Argininosuccinate synthase PF550_07270 IPR018223 Argininosuccinate synthase, conserved site PF550_07270 IPR023434 Argininosuccinate synthase, type 1 subfamily PF550_07270 IPR024074 Argininosuccinate synthetase, catalytic/multimerisation domain body PF550_07270 IPR024073 Argininosuccinate synthetase mutimerisation domain, C-terminal tail PF550_07270 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold PF550_07275 IPR036188 FAD/NAD(P)-binding domain superfamily PF550_07275 IPR001155 NADH:flavin oxidoreductase/NADH oxidase, N-terminal PF550_07275 IPR013785 Aldolase-type TIM barrel PF550_07275 IPR023753 FAD/NAD(P)-binding domain PF550_07290 IPR010295 Protein of unknown function DUF898 PF550_07295 IPR004872 Lipoprotein NlpA family PF550_07315 IPR005534 Curli production assembly/transport component CsgG PF550_07325 IPR008517 Protein of unknown function DUF799 PF550_07335 IPR004841 Amino acid permease/ SLC12A domain PF550_07335 IPR004840 Amino acid permease, conserved site PF550_07340 IPR036188 FAD/NAD(P)-binding domain superfamily PF550_07340 IPR012727 Glycine oxidase ThiO PF550_07340 IPR006076 FAD dependent oxidoreductase PF550_07345 IPR004841 Amino acid permease/ SLC12A domain PF550_07355 IPR036390 Winged helix DNA-binding domain superfamily PF550_07355 IPR000524 Transcription regulator HTH, GntR PF550_07355 IPR008920 Transcription regulator FadR/GntR, C-terminal PF550_07355 IPR011711 GntR, C-terminal PF550_07355 IPR036388 Winged helix-like DNA-binding domain superfamily PF550_07365 IPR016161 Aldehyde/histidinol dehydrogenase PF550_07365 IPR016163 Aldehyde dehydrogenase, C-terminal PF550_07365 IPR029510 Aldehyde dehydrogenase, glutamic acid active site PF550_07365 IPR016162 Aldehyde dehydrogenase, N-terminal PF550_07365 IPR015657 Aminobutyraldehyde dehydrogenase PF550_07365 IPR017749 1-pyrroline dehydrogenase PF550_07365 IPR015590 Aldehyde dehydrogenase domain PF550_07375 IPR017652 Acetyl/Succinylornithine transaminase family, bacteria PF550_07375 IPR005814 Aminotransferase class-III PF550_07375 IPR015424 Pyridoxal phosphate-dependent transferase PF550_07375 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 PF550_07375 IPR015421 Pyridoxal phosphate-dependent transferase, major domain PF550_07375 IPR026330 Succinylornithine transaminase PF550_07375 IPR004636 Acetylornithine/Succinylornithine transaminase family PF550_07380 IPR016181 Acyl-CoA N-acyltransferase PF550_07380 IPR007041 Arginine N-succinyltransferase AstA/AruG PF550_07380 IPR017650 Arginine N-succinyltransferase PF550_07385 IPR004841 Amino acid permease/ SLC12A domain PF550_07385 IPR004840 Amino acid permease, conserved site PF550_07390 IPR016161 Aldehyde/histidinol dehydrogenase PF550_07390 IPR016163 Aldehyde dehydrogenase, C-terminal PF550_07390 IPR012394 Aldehyde dehydrogenase NAD(P)-dependent PF550_07390 IPR029510 Aldehyde dehydrogenase, glutamic acid active site PF550_07390 IPR016162 Aldehyde dehydrogenase, N-terminal PF550_07390 IPR015590 Aldehyde dehydrogenase domain PF550_07395 IPR032687 HTH-type transcriptional regulator AraC-type, N-terminal PF550_07395 IPR009057 Homeobox-like domain superfamily PF550_07395 IPR018060 DNA binding HTH domain, AraC-type PF550_07395 IPR020449 Transcription regulator HTH, AraC- type PF550_07400 IPR000620 EamA domain PF550_07405 IPR007392 D-galactarate/Altronate dehydratase, C-terminal PF550_07405 IPR017654 Galactarate dehydratase GarD-like PF550_07405 IPR032893 Galactarate dehydratase (L-threo-forming) GarD, Enterobacteriaceae PF550_07405 IPR013974 SAF domain PF550_07410 IPR036259 MFS transporter superfamily PF550_07410 IPR011701 Major facilitator superfamily PF550_07410 IPR020846 Major facilitator superfamily domain PF550_07410 IPR000849 Sugar phosphate transporter PF550_07415 IPR017653 Glucarate dehydratase PF550_07415 IPR013342 Mandelate racemase/muconate lactonizing enzyme, C-terminal PF550_07415 IPR029065 Enolase C-terminal domain-like PF550_07415 IPR029017 Enolase-like, N-terminal PF550_07415 IPR036849 Enolase-like, C-terminal domain superfamily PF550_07415 IPR034598 D-Glucarate dehydratase-like PF550_07415 IPR034593 Mandelate racemase-like PF550_07420 IPR002220 DapA-like PF550_07420 IPR017655 5-dehydro-4-deoxyglucarate dehydratase PF550_07420 IPR013785 Aldolase-type TIM barrel PF550_07425 IPR016163 Aldehyde dehydrogenase, C-terminal PF550_07425 IPR016162 Aldehyde dehydrogenase, N-terminal PF550_07425 IPR015590 Aldehyde dehydrogenase domain PF550_07425 IPR016161 Aldehyde/histidinol dehydrogenase PF550_07430 IPR011711 GntR, C-terminal PF550_07430 IPR008920 Transcription regulator FadR/GntR, C-terminal PF550_07430 IPR000524 Transcription regulator HTH, GntR PF550_07430 IPR036388 Winged helix-like DNA-binding domain superfamily PF550_07430 IPR036390 Winged helix DNA-binding domain superfamily PF550_07435 IPR029058 Alpha/Beta hydrolase fold PF550_07435 IPR011118 Tannase/feruloyl esterase PF550_07445 IPR020915 Uncharacterised protein family UPF0311 PF550_07450 IPR005318 Outer membrane porin, bacterial PF550_07450 IPR023614 Porin domain superfamily PF550_07455 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal PF550_07455 IPR036250 Acyl-CoA dehydrogenase-like, C-terminal PF550_07455 IPR006091 Acyl-CoA oxidase/dehydrogenase, central domain PF550_07455 IPR006089 Acyl-CoA dehydrogenase, conserved site PF550_07455 IPR037069 Acyl-CoA dehydrogenase/oxidase, N-terminal domain superfamily PF550_07455 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal PF550_07455 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily PF550_07465 IPR016161 Aldehyde/histidinol dehydrogenase PF550_07465 IPR015590 Aldehyde dehydrogenase domain PF550_07465 IPR016162 Aldehyde dehydrogenase, N-terminal PF550_07465 IPR029510 Aldehyde dehydrogenase, glutamic acid active site PF550_07465 IPR016163 Aldehyde dehydrogenase, C-terminal PF550_07470 IPR001753 Enoyl-CoA hydratase/isomerase PF550_07470 IPR018376 Enoyl-CoA hydratase/isomerase, conserved site PF550_07470 IPR029045 ClpP/crotonase-like domain superfamily PF550_07475 IPR005829 Sugar transporter, conserved site PF550_07475 IPR011701 Major facilitator superfamily PF550_07475 IPR020846 Major facilitator superfamily domain PF550_07475 IPR036259 MFS transporter superfamily PF550_07490 IPR001433 Oxidoreductase FAD/NAD(P)-binding PF550_07490 IPR000951 Phthalate dioxygenase reductase PF550_07490 IPR039261 Ferredoxin-NADP reductase (FNR), nucleotide-binding domain PF550_07490 IPR017927 FAD-binding domain, ferredoxin reductase-type PF550_07490 IPR017938 Riboflavin synthase-like beta-barrel PF550_07490 IPR036010 2Fe-2S ferredoxin-like superfamily PF550_07490 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain PF550_07490 IPR006058 2Fe-2S ferredoxin, iron-sulphur binding site PF550_07490 IPR012675 Beta-grasp domain superfamily PF550_07495 IPR017941 Rieske [2Fe-2S] iron-sulphur domain PF550_07495 IPR036922 Rieske [2Fe-2S] iron-sulphur domain superfamily PF550_07495 IPR015881 Aromatic-ring-hydroxylating dioxygenase, 2Fe-2S-binding site PF550_07505 IPR016187 C-type lectin fold PF550_07505 IPR005532 Sulfatase-modifying factor enzyme PF550_07505 IPR042095 Sulfatase-modifying factor enzyme superfamily PF550_07510 IPR000917 Sulfatase, N-terminal PF550_07510 IPR024607 Sulfatase, conserved site PF550_07510 IPR017850 Alkaline-phosphatase-like, core domain superfamily PF550_07515 IPR011701 Major facilitator superfamily PF550_07515 IPR004746 Major facilitator superfamily, aromatic acid:H+ symporter family PF550_07515 IPR020846 Major facilitator superfamily domain PF550_07515 IPR036259 MFS transporter superfamily PF550_07515 IPR005829 Sugar transporter, conserved site PF550_07520 IPR005318 Outer membrane porin, bacterial PF550_07520 IPR023614 Porin domain superfamily PF550_07525 IPR036188 FAD/NAD(P)-binding domain superfamily PF550_07525 IPR007867 Glucose-methanol-choline oxidoreductase, C-terminal PF550_07530 IPR002168 Lipase, GDXG, putative histidine active site PF550_07530 IPR013094 Alpha/beta hydrolase fold-3 PF550_07530 IPR029058 Alpha/Beta hydrolase fold PF550_07530 IPR033140 Lipase, GDXG, putative serine active site PF550_07535 IPR036291 NAD(P)-binding domain superfamily PF550_07535 IPR020904 Short-chain dehydrogenase/reductase, conserved site PF550_07535 IPR002347 Short-chain dehydrogenase/reductase SDR PF550_07540 IPR020946 Flavin monooxygenase-like PF550_07540 IPR036188 FAD/NAD(P)-binding domain superfamily PF550_07545 IPR032687 HTH-type transcriptional regulator AraC-type, N-terminal PF550_07545 IPR009057 Homeobox-like domain superfamily PF550_07545 IPR018060 DNA binding HTH domain, AraC-type PF550_07550 IPR016874 Tetracenomycin polyketide synthesis O-methyltransferase TcmP PF550_07550 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase PF550_07550 IPR007213 Methyltransferase Ppm1/Ppm2/Tcmp PF550_07550 IPR011610 S-adenosyl-L-methionine-dependent methyltransferase, putative PF550_07555 IPR036188 FAD/NAD(P)-binding domain superfamily PF550_07555 IPR020946 Flavin monooxygenase-like PF550_07560 IPR036291 NAD(P)-binding domain superfamily PF550_07560 IPR020904 Short-chain dehydrogenase/reductase, conserved site PF550_07560 IPR002347 Short-chain dehydrogenase/reductase SDR PF550_07570 IPR001647 DNA-binding HTH domain, TetR-type PF550_07570 IPR009057 Homeobox-like domain superfamily PF550_07570 IPR041490 HTH-type transcriptional repressor KstR2, C-terminal PF550_07570 IPR036271 Tetracyclin repressor-like, C-terminal domain superfamily PF550_07570 IPR023772 DNA-binding HTH domain, TetR-type, conserved site PF550_07575 IPR011051 RmlC-like cupin domain superfamily PF550_07575 IPR014710 RmlC-like jelly roll fold PF550_07575 IPR003829 Pirin, N-terminal domain PF550_07575 IPR012093 Pirin PF550_07575 IPR041602 Quercetin 2,3-dioxygenase, C-terminal cupin domain PF550_07585 IPR036291 NAD(P)-binding domain superfamily PF550_07585 IPR020904 Short-chain dehydrogenase/reductase, conserved site PF550_07585 IPR002347 Short-chain dehydrogenase/reductase SDR PF550_07590 IPR020946 Flavin monooxygenase-like PF550_07590 IPR036188 FAD/NAD(P)-binding domain superfamily PF550_07600 IPR026033 Azaguanine-like transporters PF550_07600 IPR006043 Xanthine/uracil/vitamin C permease PF550_07605 IPR001365 Adenosine/AMP deaminase domain PF550_07605 IPR028892 Adenine deaminase type 2 PF550_07605 IPR006330 Adenosine/adenine deaminase PF550_07605 IPR032466 Metal-dependent hydrolase PF550_07610 IPR011577 Cytochrome b561, bacterial/Ni-hydrogenase PF550_07610 IPR016174 Di-haem cytochrome, transmembrane PF550_07620 IPR036397 Ribonuclease H superfamily PF550_07620 IPR024567 Ribonuclease HII/HIII domain PF550_07620 IPR001352 Ribonuclease HII/HIII PF550_07620 IPR012337 Ribonuclease H-like superfamily PF550_07620 IPR022898 Ribonuclease HII PF550_07625 IPR003751 Translational regulator CsrA PF550_07625 IPR036107 Carbon storage regulator superfamily PF550_07630 IPR036393 Acetylglutamate kinase-like superfamily PF550_07630 IPR002912 ACT domain PF550_07630 IPR041740 Aspartokinase catalytic domain PF550_07630 IPR001048 Aspartate/glutamate/uridylate kinase PF550_07630 IPR005260 Aspartate kinase, monofunctional class PF550_07630 IPR001341 Aspartate kinase PF550_07630 IPR018042 Aspartate kinase, conserved site PF550_07630 IPR027795 CASTOR, ACT domain PF550_07635 IPR003156 DHHA1 domain PF550_07635 IPR023033 Alanine-tRNA ligase, eukaryota/bacteria PF550_07635 IPR018164 Alanyl-tRNA synthetase, class IIc, N-terminal PF550_07635 IPR012947 Threonyl/alanyl tRNA synthetase, SAD PF550_07635 IPR018162 Alanine-tRNA ligase, class IIc, anti-codon-binding domain superfamily PF550_07635 IPR018165 Alanyl-tRNA synthetase, class IIc, core domain PF550_07635 IPR002318 Alanine-tRNA ligase, class IIc PF550_07635 IPR018163 Threonyl/alanyl tRNA synthetase, class II-like, putative editing domain superfamily PF550_07635 IPR009000 Translation protein, beta-barrel domain superfamily PF550_07640 IPR020828 Glyceraldehyde 3-phosphate dehydrogenase, NAD(P) binding domain PF550_07640 IPR020830 Glyceraldehyde 3-phosphate dehydrogenase, active site PF550_07640 IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family PF550_07640 IPR036291 NAD(P)-binding domain superfamily PF550_07640 IPR006424 Glyceraldehyde-3-phosphate dehydrogenase, type I PF550_07640 IPR020829 Glyceraldehyde 3-phosphate dehydrogenase, catalytic domain PF550_07650 IPR004517 ATP phosphoribosyltransferase regulatory subunit PF550_07650 IPR041715 Class II Histidinyl-tRNA synthetase (HisRS)-like catalytic core domain PF550_07650 IPR004516 Histidine-tRNA ligase/ATP phosphoribosyltransferase regulatory subunit PF550_07655 IPR018220 Adenylosuccinate synthase, GTP-binding site PF550_07655 IPR033128 Adenylosuccinate synthase, active site PF550_07655 IPR042109 Adenylosuccinate synthetase, domain 1 PF550_07655 IPR042110 Adenylosuccinate synthetase, domain 2 PF550_07655 IPR042111 Adenylosuccinate synthetase, domain 3 PF550_07655 IPR001114 Adenylosuccinate synthetase PF550_07655 IPR027417 P-loop containing nucleoside triphosphate hydrolase PF550_07670 IPR020471 Aldo/keto reductase PF550_07670 IPR023210 NADP-dependent oxidoreductase domain PF550_07670 IPR036812 NADP-dependent oxidoreductase domain superfamily PF550_07675 IPR018488 Cyclic nucleotide-binding, conserved site PF550_07675 IPR012318 Crp-type HTH domain PF550_07675 IPR036388 Winged helix-like DNA-binding domain superfamily PF550_07675 IPR018490 Cyclic nucleotide-binding-like PF550_07675 IPR036390 Winged helix DNA-binding domain superfamily PF550_07675 IPR000595 Cyclic nucleotide-binding domain PF550_07675 IPR018335 Transcription regulator HTH, Crp-type, conserved site PF550_07675 IPR014710 RmlC-like jelly roll fold PF550_07685 IPR015946 K homology domain-like, alpha/beta PF550_07685 IPR003718 OsmC/Ohr family PF550_07685 IPR036102 OsmC/Ohr superfamily PF550_07700 IPR036628 Clp, N-terminal domain superfamily PF550_07700 IPR028299 ClpA/B, conserved site 2 PF550_07700 IPR018368 ClpA/B, conserved site 1 PF550_07700 IPR001270 ClpA/B family PF550_07700 IPR004176 Clp, N-terminal PF550_07700 IPR019489 Clp ATPase, C-terminal PF550_07700 IPR017730 Chaperonin ClpB PF550_07700 IPR003959 ATPase, AAA-type, core PF550_07700 IPR003593 AAA+ ATPase domain PF550_07700 IPR027417 P-loop containing nucleoside triphosphate hydrolase PF550_07700 IPR041546 ClpA/ClpB, AAA lid domain PF550_07715 IPR002052 DNA methylase, N-6 adenine-specific, conserved site PF550_07715 IPR000241 Putative RNA methylase domain PF550_07715 IPR004114 THUMP domain PF550_07715 IPR017244 Ribosomal RNA large subunit methyltransferase K/L PF550_07715 IPR019614 S-adenosylmethionine-dependent methyltransferase PF550_07715 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase PF550_07725 IPR006131 Aspartate/ornithine carbamoyltransferase, Asp/Orn-binding domain PF550_07725 IPR002082 Aspartate carbamoyltransferase PF550_07725 IPR036901 Aspartate/ornithine carbamoyltransferase superfamily PF550_07725 IPR006130 Aspartate/ornithine carbamoyltransferase PF550_07725 IPR006132 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding PF550_07730 IPR004722 Dihydroorotase PF550_07730 IPR011059 Metal-dependent hydrolase, composite domain superfamily PF550_07730 IPR006680 Amidohydrolase-related PF550_07730 IPR032466 Metal-dependent hydrolase PF550_07735 IPR006690 Outer membrane protein, OmpA-like, conserved site PF550_07735 IPR006665 OmpA-like domain PF550_07735 IPR006664 Outer membrane protein, bacterial PF550_07735 IPR039567 Glycine zipper domain PF550_07735 IPR036737 OmpA-like domain superfamily PF550_07745 IPR010987 Glutathione S-transferase, C-terminal-like PF550_07745 IPR036282 Glutathione S-transferase, C-terminal domain superfamily PF550_07745 IPR004045 Glutathione S-transferase, N-terminal PF550_07745 IPR004046 Glutathione S-transferase, C-terminal PF550_07745 IPR036249 Thioredoxin-like superfamily PF550_07750 IPR003358 tRNA (guanine-N-7) methyltransferase, Trmb type PF550_07750 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase PF550_07760 IPR004046 Glutathione S-transferase, C-terminal PF550_07760 IPR004045 Glutathione S-transferase, N-terminal PF550_07760 IPR036282 Glutathione S-transferase, C-terminal domain superfamily PF550_07760 IPR010987 Glutathione S-transferase, C-terminal-like PF550_07760 IPR036249 Thioredoxin-like superfamily PF550_07770 IPR012081 Alkyl hydroperoxide reductase subunit F PF550_07770 IPR002109 Glutaredoxin PF550_07770 IPR023753 FAD/NAD(P)-binding domain PF550_07770 IPR008255 Pyridine nucleotide-disulphide oxidoreductase, class-II, active site PF550_07770 IPR012336 Thioredoxin-like fold PF550_07770 IPR036249 Thioredoxin-like superfamily PF550_07770 IPR036188 FAD/NAD(P)-binding domain superfamily PF550_07780 IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase PF550_07780 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase PF550_07790 IPR019479 Peroxiredoxin, C-terminal PF550_07790 IPR017559 Alkyl hydroperoxide reductase subunit C PF550_07790 IPR024706 Peroxiredoxin, AhpC-type PF550_07790 IPR036249 Thioredoxin-like superfamily PF550_07790 IPR013766 Thioredoxin domain PF550_07790 IPR000866 Alkyl hydroperoxide reductase subunit C/ Thiol specific antioxidant PF550_07795 IPR003593 AAA+ ATPase domain PF550_07795 IPR011545 DEAD/DEAH box helicase domain PF550_07795 IPR011709 Domain of unknown function DUF1605 PF550_07795 IPR007502 Helicase-associated domain PF550_07795 IPR014001 Helicase superfamily 1/2, ATP-binding domain PF550_07795 IPR001650 Helicase, C-terminal PF550_07795 IPR027417 P-loop containing nucleoside triphosphate hydrolase PF550_07795 IPR010222 RNA helicase HrpA PF550_07795 IPR024590 RNA helicase HrpA, C-terminal PF550_07800 IPR013751 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III PF550_07800 IPR013747 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III, C-terminal PF550_07800 IPR004655 3-oxoacyl-[acyl-carrier-protein] synthase 3 PF550_07800 IPR016039 Thiolase-like PF550_07810 IPR005829 Sugar transporter, conserved site PF550_07810 IPR004746 Major facilitator superfamily, aromatic acid:H+ symporter family PF550_07810 IPR011701 Major facilitator superfamily PF550_07810 IPR036259 MFS transporter superfamily PF550_07810 IPR020846 Major facilitator superfamily domain PF550_07815 IPR004711 Benzoate transporter PF550_07820 IPR036291 NAD(P)-binding domain superfamily PF550_07820 IPR020904 Short-chain dehydrogenase/reductase, conserved site PF550_07820 IPR002347 Short-chain dehydrogenase/reductase SDR PF550_07825 IPR012675 Beta-grasp domain superfamily PF550_07825 IPR036010 2Fe-2S ferredoxin-like superfamily PF550_07825 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain PF550_07825 IPR006058 2Fe-2S ferredoxin, iron-sulphur binding site PF550_07825 IPR001433 Oxidoreductase FAD/NAD(P)-binding PF550_07825 IPR008333 Flavoprotein pyridine nucleotide cytochrome reductase-like, FAD-binding domain PF550_07825 IPR017927 FAD-binding domain, ferredoxin reductase-type PF550_07825 IPR039261 Ferredoxin-NADP reductase (FNR), nucleotide-binding domain PF550_07825 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase PF550_07825 IPR017938 Riboflavin synthase-like beta-barrel PF550_07830 IPR017641 Benzoate 1,2-dioxygenase, small subunit PF550_07830 IPR032710 NTF2-like domain superfamily PF550_07830 IPR000391 Ring-hydroxylating dioxygenase beta subunit PF550_07835 IPR015879 Aromatic-ring-hydroxylating dioxygenase, alpha subunit, C-terminal domain PF550_07835 IPR001663 Aromatic-ring-hydroxylating dioxygenase, alpha subunit PF550_07835 IPR036922 Rieske [2Fe-2S] iron-sulphur domain superfamily PF550_07835 IPR017941 Rieske [2Fe-2S] iron-sulphur domain PF550_07835 IPR017639 Benzoate 1,2-dioxygenase, large subunit PF550_07835 IPR015881 Aromatic-ring-hydroxylating dioxygenase, 2Fe-2S-binding site PF550_07845 IPR036390 Winged helix DNA-binding domain superfamily PF550_07845 IPR036388 Winged helix-like DNA-binding domain superfamily PF550_07845 IPR000847 Transcription regulator HTH, LysR PF550_07845 IPR005119 LysR, substrate-binding PF550_07855 IPR023299 P-type ATPase, cytoplasmic domain N PF550_07855 IPR018303 P-type ATPase, phosphorylation site PF550_07855 IPR006121 Heavy metal-associated domain, HMA PF550_07855 IPR001757 P-type ATPase PF550_07855 IPR027256 P-type ATPase, subfamily IB PF550_07855 IPR023298 P-type ATPase, transmembrane domain superfamily PF550_07855 IPR008250 P-type ATPase, A domain superfamily PF550_07855 IPR036412 HAD-like superfamily PF550_07855 IPR006122 Heavy metal-associated domain, copper ion-binding PF550_07855 IPR036163 Heavy metal-associated domain superfamily PF550_07855 IPR023214 HAD superfamily PF550_07855 IPR017969 Heavy-metal-associated, conserved site PF550_07860 IPR009061 Putative DNA-binding domain superfamily PF550_07860 IPR000551 MerR-type HTH domain PF550_07860 IPR015358 Transcription regulator MerR, DNA binding PF550_07860 IPR011789 Cu(I)-responsive transcriptional regulator PF550_07895 IPR003753 Exonuclease VII, large subunit PF550_07895 IPR020579 Exonuclease VII, large subunit, C-terminal PF550_07895 IPR025824 OB-fold nucleic acid binding domain PF550_07925 IPR001123 Amino acid exporter protein, LeuE-type PF550_07930 IPR019844 Cold-shock (CSD) domain PF550_07930 IPR002059 Cold-shock protein, DNA-binding PF550_07930 IPR012340 Nucleic acid-binding, OB-fold PF550_07930 IPR012156 Cold shock, CspA PF550_07930 IPR011129 Cold shock domain PF550_07940 IPR029036 Pyrroline-5-carboxylate reductase, dimerisation domain PF550_07940 IPR028939 Pyrroline-5-carboxylate reductase, catalytic, N-terminal PF550_07940 IPR000304 Pyrroline-5-carboxylate reductase PF550_07940 IPR036291 NAD(P)-binding domain superfamily PF550_07940 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily PF550_07975 IPR020846 Major facilitator superfamily domain PF550_07975 IPR036259 MFS transporter superfamily PF550_07975 IPR011701 Major facilitator superfamily PF550_07980 IPR002577 Helix-turn-helix, HxlR type PF550_07980 IPR036390 Winged helix DNA-binding domain superfamily PF550_07980 IPR036388 Winged helix-like DNA-binding domain superfamily PF550_07980 IPR011991 ArsR-like helix-turn-helix domain PF550_08005 IPR032678 tRNA synthetases class I, catalytic domain PF550_08005 IPR009080 Aminoacyl-tRNA synthetase, class Ia, anticodon-binding PF550_08005 IPR015273 Cysteinyl-tRNA synthetase, class Ia, DALR PF550_08005 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold PF550_08005 IPR015803 Cysteine-tRNA ligase PF550_08005 IPR024909 Cysteinyl-tRNA synthetase/mycothiol ligase PF550_08010 IPR000644 CBS domain PF550_08010 IPR001347 Sugar isomerase (SIS) PF550_08010 IPR004800 Phosphosugar isomerase, KdsD/KpsF-type PF550_08010 IPR035474 KpsF-like, SIS domain PF550_08015 IPR010023 KdsC family PF550_08015 IPR023214 HAD superfamily PF550_08015 IPR036412 HAD-like superfamily PF550_08025 IPR005653 Organic solvent tolerance-like, N-terminal PF550_08025 IPR014340 Lipopolysaccharide export system protein LptA PF550_08030 IPR027417 P-loop containing nucleoside triphosphate hydrolase PF550_08030 IPR030921 LPS export ABC transporter, ATP-binding protein LptB PF550_08030 IPR003593 AAA+ ATPase domain PF550_08030 IPR017871 ABC transporter, conserved site PF550_08030 IPR032823 Branched-chain amino acid ATP-binding cassette transporter, C-terminal PF550_08030 IPR003439 ABC transporter-like PF550_08035 IPR003423 Outer membrane efflux protein PF550_08035 IPR010130 Type I secretion outer membrane protein, TolC PF550_08045 IPR009057 Homeobox-like domain superfamily PF550_08055 IPR024474 Zinc-finger binding domain of transposase IS66 PF550_08055 IPR004291 Transposase, IS66 PF550_08055 IPR039552 Transposase IS66, C-terminal PF550_08055 IPR024463 Transposase TnpC, homeodomain PF550_08065 IPR006144 Secretion protein HlyD, conserved site PF550_08065 IPR010129 Type I secretion membrane fusion protein, HlyD family PF550_08070 IPR020569 Uncharacterised protein family UPF0029, Impact, conserved site PF550_08070 IPR035647 EF-G domain III/V-like PF550_08070 IPR023582 Impact family PF550_08070 IPR001498 Impact, N-terminal PF550_08070 IPR020568 Ribosomal protein S5 domain 2-type fold PF550_08070 IPR036956 Impact, N-terminal domain superfamily PF550_08075 IPR001451 Hexapeptide repeat PF550_08075 IPR018357 Hexapeptide transferase, conserved site PF550_08075 IPR011004 Trimeric LpxA-like superfamily PF550_08085 IPR002935 Class I-like SAM-dependent O-methyltransferase PF550_08085 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase PF550_08095 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain PF550_08095 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site PF550_08095 IPR000813 7Fe ferredoxin PF550_08095 IPR022569 Ferredoxin, C-terminal PF550_08105 IPR005748 DNA mismatch repair protein MutS PF550_08105 IPR007695 DNA mismatch repair protein MutS-like, N-terminal PF550_08105 IPR017261 DNA mismatch repair protein MutS/MSH PF550_08105 IPR007696 DNA mismatch repair protein MutS, core PF550_08105 IPR016151 DNA mismatch repair protein MutS, N-terminal PF550_08105 IPR036187 DNA mismatch repair protein MutS, core domain superfamily PF550_08105 IPR007860 DNA mismatch repair protein MutS, connector domain PF550_08105 IPR036678 MutS, connector domain superfamily PF550_08105 IPR027417 P-loop containing nucleoside triphosphate hydrolase PF550_08105 IPR000432 DNA mismatch repair protein MutS, C-terminal PF550_08105 IPR007861 DNA mismatch repair protein MutS, clamp PF550_08110 IPR019888 Transcription regulator AsnC-type PF550_08110 IPR011008 Dimeric alpha-beta barrel PF550_08110 IPR036390 Winged helix DNA-binding domain superfamily PF550_08110 IPR036388 Winged helix-like DNA-binding domain superfamily PF550_08110 IPR019885 Transcription regulator HTH, AsnC-type, conserved site PF550_08110 IPR019887 Transcription regulator AsnC/Lrp, ligand binding domain PF550_08110 IPR011991 ArsR-like helix-turn-helix domain PF550_08110 IPR000485 AsnC-type HTH domain PF550_08115 IPR000620 EamA domain PF550_08120 IPR001633 EAL domain PF550_08120 IPR029787 Nucleotide cyclase PF550_08120 IPR035919 EAL domain superfamily PF550_08120 IPR000160 GGDEF domain PF550_08120 IPR005330 MHYT domain PF550_08125 IPR004960 Bacterial lipid A biosynthesis acyltransferase PF550_08125 IPR011920 Lipid A biosynthesis lauroyl (or palmitoleoyl) acyltransferase PF550_08140 IPR011701 Major facilitator superfamily PF550_08140 IPR004746 Major facilitator superfamily, aromatic acid:H+ symporter family PF550_08140 IPR020846 Major facilitator superfamily domain PF550_08140 IPR036259 MFS transporter superfamily PF550_08140 IPR005829 Sugar transporter, conserved site PF550_08160 IPR013328 6-phosphogluconate dehydrogenase, domain 2 PF550_08160 IPR026578 L-carnitine dehydrogenase PF550_08160 IPR036291 NAD(P)-binding domain superfamily PF550_08160 IPR006176 3-hydroxyacyl-CoA dehydrogenase, NAD binding PF550_08160 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily PF550_08160 IPR006108 3-hydroxyacyl-CoA dehydrogenase, C-terminal PF550_08180 IPR041492 Haloacid dehalogenase-like hydrolase PF550_08180 IPR023214 HAD superfamily PF550_08180 IPR006439 HAD hydrolase, subfamily IA PF550_08180 IPR036412 HAD-like superfamily PF550_08180 IPR023198 Phosphoglycolate phosphatase-like, domain 2 PF550_08180 IPR023733 Pyrophosphatase PpaX PF550_08200 IPR005119 LysR, substrate-binding PF550_08200 IPR000847 Transcription regulator HTH, LysR PF550_08200 IPR036388 Winged helix-like DNA-binding domain superfamily PF550_08200 IPR036390 Winged helix DNA-binding domain superfamily PF550_08205 IPR001046 NRAMP family PF550_08210 IPR005501 LamB/YcsF/PxpA-like PF550_08210 IPR011330 Glycoside hydrolase/deacetylase, beta/alpha-barrel PF550_08215 IPR038021 Putative hydro-lyase PF550_08215 IPR009906 D-glutamate cyclase PF550_08215 IPR016938 Uncharacterised protein family UPF0317 PF550_08225 IPR005481 Biotin carboxylase-like, N-terminal domain PF550_08225 IPR011053 Single hybrid motif PF550_08225 IPR011054 Rudiment single hybrid motif PF550_08225 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain PF550_08225 IPR000089 Biotin/lipoyl attachment PF550_08225 IPR016185 Pre-ATP-grasp domain superfamily PF550_08225 IPR011764 Biotin carboxylation domain PF550_08225 IPR001882 Biotin-binding site PF550_08225 IPR011761 ATP-grasp fold PF550_08225 IPR005482 Biotin carboxylase, C-terminal PF550_08230 IPR014743 Chloride channel, core PF550_08230 IPR001807 Chloride channel, voltage gated PF550_08235 IPR005565 Haemolysin activator HlyB, C-terminal PF550_08235 IPR027282 Two partner secretion pathway transporter PF550_08235 IPR013686 Polypeptide-transport-associated, ShlB-type PF550_08235 IPR034746 POTRA domain PF550_08235 IPR035251 ShlB, POTRA domain PF550_08240 IPR025157 Hemagglutinin repeat PF550_08240 IPR010069 Filamentous haemagglutinin, 20-residue x2 repeat PF550_08240 IPR024973 ESPR domain PF550_08240 IPR012334 Pectin lyase fold PF550_08240 IPR011050 Pectin lyase fold/virulence factor PF550_08240 IPR006914 VENN motif-containing domain PF550_08240 IPR008638 Filamentous haemagglutinin, N-terminal PF550_08265 IPR013149 Alcohol dehydrogenase, C-terminal PF550_08265 IPR013154 Alcohol dehydrogenase, N-terminal PF550_08265 IPR027399 Alcohol dehydrogenase GroES-associated PF550_08265 IPR002328 Alcohol dehydrogenase, zinc-type, conserved site PF550_08265 IPR011032 GroES-like superfamily PF550_08265 IPR036291 NAD(P)-binding domain superfamily PF550_08285 IPR011761 ATP-grasp fold PF550_08285 IPR005481 Biotin carboxylase-like, N-terminal domain PF550_08285 IPR011764 Biotin carboxylation domain PF550_08285 IPR005482 Biotin carboxylase, C-terminal PF550_08285 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain PF550_08285 IPR016185 Pre-ATP-grasp domain superfamily PF550_08285 IPR011054 Rudiment single hybrid motif PF550_08290 IPR003680 Flavodoxin-like fold PF550_08290 IPR029039 Flavoprotein-like superfamily PF550_08290 IPR023948 Glutathione-regulated potassium-efflux system ancillary protein KefF PF550_08295 IPR036388 Winged helix-like DNA-binding domain superfamily PF550_08295 IPR036390 Winged helix DNA-binding domain superfamily PF550_08295 IPR002577 Helix-turn-helix, HxlR type PF550_08310 IPR027271 Acetolactate synthase/Transcription factor NikR, C-terminal PF550_08310 IPR013321 Arc-type ribbon-helix-helix PF550_08310 IPR002145 Ribbon-helix-helix protein, CopG PF550_08310 IPR022988 Nickel-responsive transcriptional regulator NikR PF550_08310 IPR010985 Ribbon-helix-helix PF550_08310 IPR014864 Transcription factor, NikR, nickel binding C-terminal PF550_08315 IPR014085 Allophanate hydrolase PF550_08315 IPR023631 Amidase signature domain PF550_08315 IPR036928 Amidase signature (AS) superfamily PF550_08320 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF PF550_08320 IPR018313 Solute-binding protein family 3, conserved site PF550_08320 IPR001320 Ionotropic glutamate receptor PF550_08325 IPR027417 P-loop containing nucleoside triphosphate hydrolase PF550_08325 IPR003593 AAA+ ATPase domain PF550_08325 IPR003439 ABC transporter-like PF550_08325 IPR017871 ABC transporter, conserved site PF550_08350 IPR010269 Type VI secretion protein, EvpB/VC_A0108, tail sheath PF550_08380 IPR009612 IcmF-related PF550_08380 IPR017731 Type VI secretion system, IcmF PF550_08380 IPR027417 P-loop containing nucleoside triphosphate hydrolase PF550_08380 IPR010623 Type VI secretion system IcmF, C-terminal PF550_08380 IPR025743 IcmF-related, N-terminal domain PF550_08390 IPR006665 OmpA-like domain PF550_08390 IPR011250 Outer membrane protein/outer membrane enzyme PagP, beta-barrel PF550_08390 IPR000498 Outer membrane protein OmpA-like, transmembrane domain PF550_08390 IPR006664 Outer membrane protein, bacterial PF550_08390 IPR006690 Outer membrane protein, OmpA-like, conserved site PF550_08390 IPR036737 OmpA-like domain superfamily PF550_08390 IPR002368 Outer membrane protein, OmpA PF550_08400 IPR003593 AAA+ ATPase domain PF550_08400 IPR001270 ClpA/B family PF550_08400 IPR003959 ATPase, AAA-type, core PF550_08400 IPR017729 Type VI secretion system, ATPase ClpV1 PF550_08400 IPR019489 Clp ATPase, C-terminal PF550_08400 IPR036628 Clp, N-terminal domain superfamily PF550_08400 IPR004176 Clp, N-terminal PF550_08400 IPR018368 ClpA/B, conserved site 1 PF550_08400 IPR041546 ClpA/ClpB, AAA lid domain PF550_08400 IPR027417 P-loop containing nucleoside triphosphate hydrolase PF550_08405 IPR017740 Type VI secretion system-associated, ImpA PF550_08405 IPR010657 ImpA, N-terminal PF550_08410 IPR010263 Type VI secretion protein, VC_A0114 PF550_08430 IPR005119 LysR, substrate-binding PF550_08430 IPR037404 HTH-type transcriptional activator IlvY, PBP2 domain PF550_08430 IPR000847 Transcription regulator HTH, LysR PF550_08430 IPR036388 Winged helix-like DNA-binding domain superfamily PF550_08430 IPR036390 Winged helix DNA-binding domain superfamily PF550_08440 IPR016192 APOBEC/CMP deaminase, zinc-binding PF550_08440 IPR016193 Cytidine deaminase-like PF550_08440 IPR002125 Cytidine and deoxycytidylate deaminase domain PF550_08445 IPR036259 MFS transporter superfamily PF550_08445 IPR020846 Major facilitator superfamily domain PF550_08445 IPR011701 Major facilitator superfamily PF550_08445 IPR004747 Cyanate transport system protein PF550_08460 IPR003828 Epoxyqueuosine reductase QueH PF550_08470 IPR009061 Putative DNA-binding domain superfamily PF550_08470 IPR015358 Transcription regulator MerR, DNA binding PF550_08470 IPR010211 Redox-sensitive transcriptional activator SoxR PF550_08470 IPR000551 MerR-type HTH domain PF550_08480 IPR020624 Schiff base-forming aldolase, conserved site PF550_08480 IPR020625 Schiff base-forming aldolase, active site PF550_08480 IPR002220 DapA-like PF550_08480 IPR005263 4-hydroxy-tetrahydrodipicolinate synthase, DapA PF550_08480 IPR013785 Aldolase-type TIM barrel PF550_08490 IPR036390 Winged helix DNA-binding domain superfamily PF550_08490 IPR036388 Winged helix-like DNA-binding domain superfamily PF550_08490 IPR008920 Transcription regulator FadR/GntR, C-terminal PF550_08490 IPR000524 Transcription regulator HTH, GntR PF550_08495 IPR008794 Proline racemase family PF550_08500 IPR023080 D-amino acid dehydrogenase DadA PF550_08500 IPR006076 FAD dependent oxidoreductase PF550_08500 IPR036188 FAD/NAD(P)-binding domain superfamily PF550_08510 IPR007419 BFD-like [2Fe-2S]-binding domain PF550_08510 IPR041854 BFD-like [2Fe-2S]-binding domain superfamily PF550_08510 IPR017224 Opine oxidase, subunit A/hydrogen cyanide synthase, subunit B PF550_08510 IPR023753 FAD/NAD(P)-binding domain PF550_08510 IPR036188 FAD/NAD(P)-binding domain superfamily PF550_08520 IPR005828 Major facilitator, sugar transporter-like PF550_08520 IPR005829 Sugar transporter, conserved site PF550_08520 IPR036259 MFS transporter superfamily PF550_08520 IPR020846 Major facilitator superfamily domain PF550_08525 IPR016161 Aldehyde/histidinol dehydrogenase PF550_08525 IPR016163 Aldehyde dehydrogenase, C-terminal PF550_08525 IPR016162 Aldehyde dehydrogenase, N-terminal PF550_08525 IPR015590 Aldehyde dehydrogenase domain PF550_08530 IPR002293 Amino acid/polyamine transporter I PF550_08535 IPR004644 Iron-sulphur-dependent L-serine dehydratase single chain form PF550_08535 IPR005131 Serine dehydratase beta chain PF550_08535 IPR029009 Allosteric substrate binding domain superfamily PF550_08535 IPR005130 Serine dehydratase-like, alpha subunit PF550_08540 IPR002539 MaoC-like dehydratase domain PF550_08540 IPR015590 Aldehyde dehydrogenase domain PF550_08540 IPR016162 Aldehyde dehydrogenase, N-terminal PF550_08540 IPR016163 Aldehyde dehydrogenase, C-terminal PF550_08540 IPR029069 HotDog domain superfamily PF550_08540 IPR011966 Phenylacetic acid degradation protein PaaN PF550_08540 IPR016161 Aldehyde/histidinol dehydrogenase PF550_08545 IPR007814 1,2-phenylacetyl-CoA epoxidase, subunit A/C PF550_08545 IPR011881 1,2-phenylacetyl-CoA epoxidase, subunit A PF550_08545 IPR009078 Ferritin-like superfamily PF550_08545 IPR012347 Ferritin-like PF550_08550 IPR009359 Phenylacetic acid degradation B PF550_08550 IPR038693 Phenylacetyl-CoA epoxidase, subunit B PF550_08555 IPR012347 Ferritin-like PF550_08555 IPR009078 Ferritin-like superfamily PF550_08555 IPR007814 1,2-phenylacetyl-CoA epoxidase, subunit A/C PF550_08555 IPR011882 1,2-phenylacetyl-CoA epoxidase, subunit C PF550_08560 IPR034904 Fe-S cluster assembly domain superfamily PF550_08560 IPR002744 MIP18 family-like PF550_08560 IPR011883 Phenylacetate-CoA oxygenase, PaaJ subunit PF550_08565 IPR017927 FAD-binding domain, ferredoxin reductase-type PF550_08565 IPR036010 2Fe-2S ferredoxin-like superfamily PF550_08565 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain PF550_08565 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase PF550_08565 IPR001433 Oxidoreductase FAD/NAD(P)-binding PF550_08565 IPR017938 Riboflavin synthase-like beta-barrel PF550_08565 IPR039261 Ferredoxin-NADP reductase (FNR), nucleotide-binding domain PF550_08565 IPR008333 Flavoprotein pyridine nucleotide cytochrome reductase-like, FAD-binding domain PF550_08565 IPR011884 Phenylacetate-CoA oxygenase/reductase, PaaK subunit PF550_08565 IPR006058 2Fe-2S ferredoxin, iron-sulphur binding site PF550_08565 IPR012675 Beta-grasp domain superfamily PF550_08570 IPR029045 ClpP/crotonase-like domain superfamily PF550_08570 IPR018376 Enoyl-CoA hydratase/isomerase, conserved site PF550_08570 IPR001753 Enoyl-CoA hydratase/isomerase PF550_08570 IPR014748 Enoyl-CoA hydratase, C-terminal PF550_08575 IPR011968 Phenylacetate degradation probable enoyl-CoA hydratase PaaB PF550_08575 IPR001753 Enoyl-CoA hydratase/isomerase PF550_08575 IPR014748 Enoyl-CoA hydratase, C-terminal PF550_08575 IPR029045 ClpP/crotonase-like domain superfamily PF550_08580 IPR006108 3-hydroxyacyl-CoA dehydrogenase, C-terminal PF550_08580 IPR006176 3-hydroxyacyl-CoA dehydrogenase, NAD binding PF550_08580 IPR006180 3-hydroxyacyl-CoA dehydrogenase, conserved site PF550_08580 IPR041040 3-hydroxybutyryl-CoA dehydrogenase reduced Rossmann-fold domain PF550_08580 IPR036291 NAD(P)-binding domain superfamily PF550_08580 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily PF550_08580 IPR011967 3-hydroxyacyl-CoA dehydrogenase PaaC PF550_08585 IPR020613 Thiolase, conserved site PF550_08585 IPR020617 Thiolase, C-terminal PF550_08585 IPR020610 Thiolase, active site PF550_08585 IPR020615 Thiolase, acyl-enzyme intermediate active site PF550_08585 IPR016039 Thiolase-like PF550_08585 IPR002155 Thiolase PF550_08585 IPR012793 Beta-ketoadipyl CoA thiolase PF550_08585 IPR020616 Thiolase, N-terminal PF550_08590 IPR042099 AMP-dependent synthetase-like superfamily PF550_08590 IPR000873 AMP-dependent synthetase/ligase PF550_08590 IPR028154 AMP-dependent ligase, C-terminal PF550_08590 IPR011880 Phenylacetate-CoA ligase PF550_08595 IPR013225 PaaX-like, C-terminal PF550_08595 IPR011965 Phenylacetic acid degradation operon negative regulatory protein PaaX PF550_08595 IPR012906 PaaX-like, N-terminal PF550_08595 IPR036388 Winged helix-like DNA-binding domain superfamily PF550_08600 IPR023446 Carnitine operon protein CaiE PF550_08600 IPR001451 Hexapeptide repeat PF550_08600 IPR011004 Trimeric LpxA-like superfamily PF550_08605 IPR003736 Phenylacetic acid degradation-related domain PF550_08605 IPR011973 Phenylacetic acid degradation protein PaaD PF550_08605 IPR006683 Thioesterase domain PF550_08605 IPR029069 HotDog domain superfamily PF550_08610 IPR027417 P-loop containing nucleoside triphosphate hydrolase PF550_08610 IPR041679 DNA2/NAM7 helicase-like, AAA domain PF550_08610 IPR041677 DNA2/NAM7 helicase, AAA domain PF550_08610 IPR027417 P-loop containing nucleoside triphosphate hydrolase PF550_08610 IPR041679 DNA2/NAM7 helicase-like, AAA domain PF550_08610 IPR041677 DNA2/NAM7 helicase, AAA domain PF550_08610 IPR025103 Protein of unknown function DUF4011 PF550_08610 IPR025103 Protein of unknown function DUF4011 PF550_08635 IPR011614 Catalase core domain PF550_08635 IPR024168 Catalase, SrpA-type, predicted PF550_08635 IPR020835 Catalase superfamily PF550_08635 IPR018028 Catalase, mono-functional, haem-containing PF550_08640 IPR011577 Cytochrome b561, bacterial/Ni-hydrogenase PF550_08640 IPR016174 Di-haem cytochrome, transmembrane PF550_08660 IPR000073 Alpha/beta hydrolase fold-1 PF550_08660 IPR029058 Alpha/Beta hydrolase fold PF550_08665 IPR002563 Flavin reductase like domain PF550_08665 IPR012349 FMN-binding split barrel PF550_08670 IPR011251 Luciferase-like domain PF550_08670 IPR036661 Luciferase-like domain superfamily PF550_08675 IPR016163 Aldehyde dehydrogenase, C-terminal PF550_08675 IPR016160 Aldehyde dehydrogenase, cysteine active site PF550_08675 IPR029510 Aldehyde dehydrogenase, glutamic acid active site PF550_08675 IPR016162 Aldehyde dehydrogenase, N-terminal PF550_08675 IPR015590 Aldehyde dehydrogenase domain PF550_08675 IPR016161 Aldehyde/histidinol dehydrogenase PF550_08685 IPR038271 Purine-cytosine permease superfamily PF550_08685 IPR001248 Purine-cytosine permease PF550_08685 IPR026030 Purine-cytosine permease Fcy2/21/22 PF550_08695 IPR016160 Aldehyde dehydrogenase, cysteine active site PF550_08695 IPR016161 Aldehyde/histidinol dehydrogenase PF550_08695 IPR016163 Aldehyde dehydrogenase, C-terminal PF550_08695 IPR029510 Aldehyde dehydrogenase, glutamic acid active site PF550_08695 IPR016162 Aldehyde dehydrogenase, N-terminal PF550_08695 IPR015590 Aldehyde dehydrogenase domain PF550_08695 IPR010102 Succinate semialdehyde dehydrogenase PF550_08700 IPR029032 AhpD-like PF550_08700 IPR003779 Carboxymuconolactone decarboxylase-like PF550_08700 IPR012788 4-carboxymuconolactone decarboxylase PF550_08705 IPR000847 Transcription regulator HTH, LysR PF550_08705 IPR036388 Winged helix-like DNA-binding domain superfamily PF550_08705 IPR036390 Winged helix DNA-binding domain superfamily PF550_08705 IPR005119 LysR, substrate-binding PF550_08710 IPR003680 Flavodoxin-like fold PF550_08710 IPR029039 Flavoprotein-like superfamily PF550_08710 IPR023048 NADH-azoreductase, FMN-dependent PF550_08715 IPR036390 Winged helix DNA-binding domain superfamily PF550_08715 IPR036388 Winged helix-like DNA-binding domain superfamily PF550_08715 IPR005471 Transcription regulator IclR, N-terminal PF550_08715 IPR014757 Transcription regulator IclR, C-terminal PF550_08715 IPR012794 Beta-ketoadipate transcriptional regulator, PcaR/PcaU/PobR PF550_08715 IPR029016 GAF-like domain superfamily PF550_08720 IPR002938 FAD-binding domain PF550_08720 IPR036188 FAD/NAD(P)-binding domain superfamily PF550_08720 IPR012733 4-hydroxybenzoate 3-monooxygenase PF550_08725 IPR028978 Chorismate pyruvate-lyase/UbiC transcription regulator-associated domain superfamily PF550_08725 IPR000524 Transcription regulator HTH, GntR PF550_08725 IPR017722 Phosphonate utilization transcriptional regulator PhnR PF550_08725 IPR011663 UbiC transcription regulator-associated PF550_08725 IPR036388 Winged helix-like DNA-binding domain superfamily PF550_08725 IPR036390 Winged helix DNA-binding domain superfamily PF550_08730 IPR026045 Ferric binding protein PF550_08735 IPR027417 P-loop containing nucleoside triphosphate hydrolase PF550_08735 IPR003593 AAA+ ATPase domain PF550_08735 IPR008995 Molybdate/tungstate binding, C-terminal PF550_08735 IPR017666 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT2 PF550_08735 IPR017871 ABC transporter, conserved site PF550_08735 IPR003439 ABC transporter-like PF550_08735 IPR014769 ABC transporter, sulphate/thiosulphate import, ATP-binding protein CysA, C-terminal PF550_08735 IPR013611 Transport-associated OB, type 2 PF550_08740 IPR000515 ABC transporter type 1, transmembrane domain MetI-like PF550_08740 IPR035906 MetI-like superfamily PF550_08745 IPR006076 FAD dependent oxidoreductase PF550_08745 IPR036188 FAD/NAD(P)-binding domain superfamily PF550_08745 IPR006281 Sarcosine oxidase, monomeric PF550_08750 IPR000192 Aminotransferase class V domain PF550_08750 IPR012703 2-aminoethylphosphonate--pyruvate transaminase PF550_08750 IPR015424 Pyridoxal phosphate-dependent transferase PF550_08750 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 PF550_08750 IPR015421 Pyridoxal phosphate-dependent transferase, major domain PF550_08750 IPR024169 Serine-pyruvate aminotransferase/2-aminoethylphosphonate-pyruvate transaminase PF550_08755 IPR006323 Phosphonoacetaldehyde hydrolase PF550_08755 IPR041492 Haloacid dehalogenase-like hydrolase PF550_08755 IPR023214 HAD superfamily PF550_08755 IPR006439 HAD hydrolase, subfamily IA PF550_08755 IPR036412 HAD-like superfamily PF550_08755 IPR023198 Phosphoglycolate phosphatase-like, domain 2 PF550_08760 IPR004746 Major facilitator superfamily, aromatic acid:H+ symporter family PF550_08760 IPR036259 MFS transporter superfamily PF550_08760 IPR011701 Major facilitator superfamily PF550_08760 IPR005829 Sugar transporter, conserved site PF550_08760 IPR020846 Major facilitator superfamily domain PF550_08765 IPR006089 Acyl-CoA dehydrogenase, conserved site PF550_08765 IPR006091 Acyl-CoA oxidase/dehydrogenase, central domain PF550_08765 IPR036250 Acyl-CoA dehydrogenase-like, C-terminal PF550_08765 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal PF550_08765 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal PF550_08765 IPR037069 Acyl-CoA dehydrogenase/oxidase, N-terminal domain superfamily PF550_08765 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily PF550_08770 IPR023606 CoA-transferase family III domain superfamily PF550_08770 IPR003673 CoA-transferase family III PF550_08775 IPR014757 Transcription regulator IclR, C-terminal PF550_08775 IPR029016 GAF-like domain superfamily PF550_08775 IPR005471 Transcription regulator IclR, N-terminal PF550_08775 IPR036388 Winged helix-like DNA-binding domain superfamily PF550_08775 IPR036390 Winged helix DNA-binding domain superfamily PF550_08780 IPR011968 Phenylacetate degradation probable enoyl-CoA hydratase PaaB PF550_08780 IPR014748 Enoyl-CoA hydratase, C-terminal PF550_08780 IPR001753 Enoyl-CoA hydratase/isomerase PF550_08780 IPR029045 ClpP/crotonase-like domain superfamily PF550_08785 IPR004136 Nitronate monooxygenase PF550_08785 IPR013785 Aldolase-type TIM barrel PF550_08790 IPR036259 MFS transporter superfamily PF550_08790 IPR020846 Major facilitator superfamily domain PF550_08790 IPR011701 Major facilitator superfamily PF550_08795 IPR036388 Winged helix-like DNA-binding domain superfamily PF550_08795 IPR005471 Transcription regulator IclR, N-terminal PF550_08795 IPR014757 Transcription regulator IclR, C-terminal PF550_08795 IPR036390 Winged helix DNA-binding domain superfamily PF550_08795 IPR029016 GAF-like domain superfamily PF550_08800 IPR020616 Thiolase, N-terminal PF550_08800 IPR012793 Beta-ketoadipyl CoA thiolase PF550_08800 IPR002155 Thiolase PF550_08800 IPR020615 Thiolase, acyl-enzyme intermediate active site PF550_08800 IPR020610 Thiolase, active site PF550_08800 IPR020617 Thiolase, C-terminal PF550_08800 IPR020613 Thiolase, conserved site PF550_08800 IPR016039 Thiolase-like PF550_08805 IPR011967 3-hydroxyacyl-CoA dehydrogenase PaaC PF550_08805 IPR036291 NAD(P)-binding domain superfamily PF550_08805 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily PF550_08805 IPR041040 3-hydroxybutyryl-CoA dehydrogenase reduced Rossmann-fold domain PF550_08805 IPR006108 3-hydroxyacyl-CoA dehydrogenase, C-terminal PF550_08805 IPR006176 3-hydroxyacyl-CoA dehydrogenase, NAD binding PF550_08805 IPR006180 3-hydroxyacyl-CoA dehydrogenase, conserved site PF550_08810 IPR020904 Short-chain dehydrogenase/reductase, conserved site PF550_08810 IPR036291 NAD(P)-binding domain superfamily PF550_08810 IPR011284 3-oxoacyl-(acyl-carrier-protein) reductase PF550_08810 IPR002347 Short-chain dehydrogenase/reductase SDR PF550_08815 IPR029045 ClpP/crotonase-like domain superfamily PF550_08815 IPR018376 Enoyl-CoA hydratase/isomerase, conserved site PF550_08815 IPR001753 Enoyl-CoA hydratase/isomerase PF550_08815 IPR014748 Enoyl-CoA hydratase, C-terminal PF550_08820 IPR006089 Acyl-CoA dehydrogenase, conserved site PF550_08820 IPR037069 Acyl-CoA dehydrogenase/oxidase, N-terminal domain superfamily PF550_08820 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal PF550_08820 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal PF550_08820 IPR036250 Acyl-CoA dehydrogenase-like, C-terminal PF550_08820 IPR006091 Acyl-CoA oxidase/dehydrogenase, central domain PF550_08820 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily PF550_08825 IPR011701 Major facilitator superfamily PF550_08825 IPR005829 Sugar transporter, conserved site PF550_08825 IPR036259 MFS transporter superfamily PF550_08825 IPR020846 Major facilitator superfamily domain PF550_08825 IPR004746 Major facilitator superfamily, aromatic acid:H+ symporter family PF550_08830 IPR012792 3-oxoacid CoA-transferase, subunit A PF550_08830 IPR037171 NagB/RpiA transferase-like PF550_08830 IPR004163 Coenzyme A transferase binding site PF550_08830 IPR004165 Coenzyme A transferase family I PF550_08835 IPR004165 Coenzyme A transferase family I PF550_08835 IPR037171 NagB/RpiA transferase-like PF550_08835 IPR004164 Coenzyme A transferase active site PF550_08835 IPR012791 3-oxoacid CoA-transferase, subunit B PF550_08845 IPR020846 Major facilitator superfamily domain PF550_08845 IPR036259 MFS transporter superfamily PF550_08845 IPR011701 Major facilitator superfamily PF550_08855 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal PF550_08855 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal PF550_08855 IPR036250 Acyl-CoA dehydrogenase-like, C-terminal PF550_08855 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily PF550_08855 IPR037069 Acyl-CoA dehydrogenase/oxidase, N-terminal domain superfamily PF550_08855 IPR025878 Acetyl-CoA dehydrogenase-like C-terminal domain PF550_08855 IPR006091 Acyl-CoA oxidase/dehydrogenase, central domain PF550_08870 IPR005119 LysR, substrate-binding PF550_08870 IPR000847 Transcription regulator HTH, LysR PF550_08870 IPR036388 Winged helix-like DNA-binding domain superfamily PF550_08870 IPR036390 Winged helix DNA-binding domain superfamily PF550_08875 IPR027167 Hydroxymethylglutaryl-CoA lyase PF550_08875 IPR000138 Hydroxymethylglutaryl-CoA lyase, active site PF550_08875 IPR000891 Pyruvate carboxyltransferase PF550_08875 IPR013785 Aldolase-type TIM barrel PF550_08880 IPR011053 Single hybrid motif PF550_08880 IPR011054 Rudiment single hybrid motif PF550_08880 IPR016185 Pre-ATP-grasp domain superfamily PF550_08880 IPR041265 Propionyl-coenzyme A carboxylase, BT domain PF550_08880 IPR005482 Biotin carboxylase, C-terminal PF550_08880 IPR000089 Biotin/lipoyl attachment PF550_08880 IPR011764 Biotin carboxylation domain PF550_08880 IPR001882 Biotin-binding site PF550_08880 IPR005481 Biotin carboxylase-like, N-terminal domain PF550_08880 IPR011761 ATP-grasp fold PF550_08880 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain PF550_08880 IPR013815 ATP-grasp fold, subdomain 1 PF550_08885 IPR001753 Enoyl-CoA hydratase/isomerase PF550_08885 IPR014748 Enoyl-CoA hydratase, C-terminal PF550_08885 IPR018376 Enoyl-CoA hydratase/isomerase, conserved site PF550_08885 IPR029045 ClpP/crotonase-like domain superfamily PF550_08890 IPR011762 Acetyl-coenzyme A carboxyltransferase, N-terminal PF550_08890 IPR034733 Acetyl-CoA carboxylase PF550_08890 IPR029045 ClpP/crotonase-like domain superfamily PF550_08890 IPR011763 Acetyl-coenzyme A carboxyltransferase, C-terminal PF550_08895 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal PF550_08895 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal PF550_08895 IPR037069 Acyl-CoA dehydrogenase/oxidase, N-terminal domain superfamily PF550_08895 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily PF550_08895 IPR036250 Acyl-CoA dehydrogenase-like, C-terminal PF550_08895 IPR006089 Acyl-CoA dehydrogenase, conserved site PF550_08895 IPR006091 Acyl-CoA oxidase/dehydrogenase, central domain PF550_08900 IPR001647 DNA-binding HTH domain, TetR-type PF550_08900 IPR009057 Homeobox-like domain superfamily PF550_08905 IPR020845 AMP-binding, conserved site PF550_08905 IPR025110 AMP-binding enzyme, C-terminal domain PF550_08905 IPR000873 AMP-dependent synthetase/ligase PF550_08925 IPR036390 Winged helix DNA-binding domain superfamily PF550_08925 IPR036388 Winged helix-like DNA-binding domain superfamily PF550_08925 IPR005119 LysR, substrate-binding PF550_08925 IPR000847 Transcription regulator HTH, LysR PF550_08960 IPR008136 CinA, C-terminal PF550_08960 IPR001453 MoaB/Mog domain PF550_08960 IPR036425 MoaB/Mog-like domain superfamily PF550_08960 IPR008135 Competence-induced protein CinA PF550_08960 IPR041424 CinA, KH domain PF550_08960 IPR036653 CinA-like, C-terminal PF550_08970 IPR029062 Class I glutamine amidotransferase-like PF550_08970 IPR018028 Catalase, mono-functional, haem-containing PF550_08970 IPR024708 Catalase active site PF550_08970 IPR041399 Large catalase, C-terminal domain PF550_08970 IPR010582 Catalase immune-responsive domain PF550_08970 IPR002226 Catalase haem-binding site PF550_08970 IPR037060 Catalase core domain superfamily PF550_08970 IPR011614 Catalase core domain PF550_08970 IPR024712 Catalase, mono-functional, haem-containing, clade 2 PF550_08970 IPR020835 Catalase superfamily PF550_08975 IPR002347 Short-chain dehydrogenase/reductase SDR PF550_08975 IPR020904 Short-chain dehydrogenase/reductase, conserved site PF550_08975 IPR036291 NAD(P)-binding domain superfamily PF550_08995 IPR006197 Peptidase S24, LexA-like PF550_08995 IPR039418 LexA-like PF550_08995 IPR036286 LexA/Signal peptidase-like superfamily PF550_08995 IPR015927 Peptidase S24/S26A/S26B/S26C PF550_09005 IPR036390 Winged helix DNA-binding domain superfamily PF550_09005 IPR011991 ArsR-like helix-turn-helix domain PF550_09005 IPR000485 AsnC-type HTH domain PF550_09005 IPR011008 Dimeric alpha-beta barrel PF550_09005 IPR019885 Transcription regulator HTH, AsnC-type, conserved site PF550_09005 IPR019887 Transcription regulator AsnC/Lrp, ligand binding domain PF550_09005 IPR019888 Transcription regulator AsnC-type PF550_09005 IPR036388 Winged helix-like DNA-binding domain superfamily PF550_09015 IPR011006 CheY-like superfamily PF550_09015 IPR003594 Histidine kinase/HSP90-like ATPase PF550_09015 IPR036890 Histidine kinase/HSP90-like ATPase superfamily PF550_09015 IPR004358 Signal transduction histidine kinase-related protein, C-terminal PF550_09015 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain PF550_09015 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily PF550_09015 IPR035965 PAS domain superfamily PF550_09015 IPR029151 Periplasmic sensor-like domain superfamily PF550_09015 IPR001789 Signal transduction response regulator, receiver domain PF550_09015 IPR005467 Histidine kinase domain PF550_09015 IPR015387 LuxQ, periplasmic PF550_09020 IPR037522 HD-GYP domain PF550_09020 IPR003607 HD/PDEase domain PF550_09020 IPR011006 CheY-like superfamily PF550_09020 IPR001789 Signal transduction response regulator, receiver domain PF550_09035 IPR035906 MetI-like superfamily PF550_09035 IPR000515 ABC transporter type 1, transmembrane domain MetI-like PF550_09035 IPR010065 Amino acid ABC transporter, permease protein, 3-TM domain PF550_09040 IPR035906 MetI-like superfamily PF550_09040 IPR010065 Amino acid ABC transporter, permease protein, 3-TM domain PF550_09040 IPR000515 ABC transporter type 1, transmembrane domain MetI-like PF550_09045 IPR003439 ABC transporter-like PF550_09045 IPR030679 ABC-type amino acid transport system, ATPase component, HisP-type PF550_09045 IPR003593 AAA+ ATPase domain PF550_09045 IPR017871 ABC transporter, conserved site PF550_09045 IPR027417 P-loop containing nucleoside triphosphate hydrolase PF550_09050 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF PF550_09050 IPR018313 Solute-binding protein family 3, conserved site PF550_09055 IPR001320 Ionotropic glutamate receptor PF550_09055 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF PF550_09055 IPR018313 Solute-binding protein family 3, conserved site PF550_09065 IPR036388 Winged helix-like DNA-binding domain superfamily PF550_09065 IPR036390 Winged helix DNA-binding domain superfamily PF550_09065 IPR005119 LysR, substrate-binding PF550_09065 IPR000847 Transcription regulator HTH, LysR PF550_09070 IPR001123 Amino acid exporter protein, LeuE-type PF550_09070 IPR004778 Homoserine/Threonine efflux protein PF550_09075 IPR015424 Pyridoxal phosphate-dependent transferase PF550_09075 IPR010970 Cysteine desulfurase, SufS PF550_09075 IPR015421 Pyridoxal phosphate-dependent transferase, major domain PF550_09075 IPR000192 Aminotransferase class V domain PF550_09075 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 PF550_09085 IPR042122 Serine acetyltransferase, N-terminal domain superfamily PF550_09085 IPR011004 Trimeric LpxA-like superfamily PF550_09085 IPR001451 Hexapeptide repeat PF550_09090 IPR023695 Thiosulfate sulfurtransferase, bacterial PF550_09090 IPR036873 Rhodanese-like domain superfamily PF550_09090 IPR001763 Rhodanese-like domain PF550_09095 IPR002347 Short-chain dehydrogenase/reductase SDR PF550_09095 IPR020904 Short-chain dehydrogenase/reductase, conserved site PF550_09095 IPR036291 NAD(P)-binding domain superfamily PF550_09095 IPR011284 3-oxoacyl-(acyl-carrier-protein) reductase PF550_09100 IPR000847 Transcription regulator HTH, LysR PF550_09100 IPR005119 LysR, substrate-binding PF550_09100 IPR036388 Winged helix-like DNA-binding domain superfamily PF550_09100 IPR036390 Winged helix DNA-binding domain superfamily PF550_09105 IPR036282 Glutathione S-transferase, C-terminal domain superfamily PF550_09105 IPR040079 Glutathione Transferase family PF550_09105 IPR004045 Glutathione S-transferase, N-terminal PF550_09105 IPR036249 Thioredoxin-like superfamily PF550_09105 IPR010987 Glutathione S-transferase, C-terminal-like PF550_09110 IPR034338 Glutathione S-transferases, subfamily 4, C-terminal PF550_09110 IPR010987 Glutathione S-transferase, C-terminal-like PF550_09110 IPR036282 Glutathione S-transferase, C-terminal domain superfamily PF550_09110 IPR040079 Glutathione Transferase family PF550_09110 IPR036249 Thioredoxin-like superfamily PF550_09110 IPR004045 Glutathione S-transferase, N-terminal PF550_09115 IPR000847 Transcription regulator HTH, LysR PF550_09115 IPR005119 LysR, substrate-binding PF550_09115 IPR036388 Winged helix-like DNA-binding domain superfamily PF550_09115 IPR036390 Winged helix DNA-binding domain superfamily PF550_09120 IPR023760 Holin-like protein CidA PF550_09120 IPR005538 LrgA/CidA family PF550_09125 IPR005261 Conserved hypothetical protein CHP00659 PF550_09125 IPR007300 CidB/LrgB family PF550_09130 IPR015424 Pyridoxal phosphate-dependent transferase PF550_09130 IPR036390 Winged helix DNA-binding domain superfamily PF550_09130 IPR004839 Aminotransferase, class I/classII PF550_09130 IPR000524 Transcription regulator HTH, GntR PF550_09130 IPR036388 Winged helix-like DNA-binding domain superfamily PF550_09130 IPR015421 Pyridoxal phosphate-dependent transferase, major domain PF550_09145 IPR036259 MFS transporter superfamily PF550_09145 IPR011701 Major facilitator superfamily PF550_09145 IPR020846 Major facilitator superfamily domain PF550_09155 IPR005119 LysR, substrate-binding PF550_09155 IPR036388 Winged helix-like DNA-binding domain superfamily PF550_09155 IPR036390 Winged helix DNA-binding domain superfamily PF550_09155 IPR000847 Transcription regulator HTH, LysR PF550_09160 IPR005777 Acetyl-S-ACP:malonate ACP transferase PF550_09160 IPR037171 NagB/RpiA transferase-like PF550_09165 IPR017555 Triphosphoribosyl-dephospho-CoA synthase PF550_09165 IPR002736 Triphosphoribosyl-dephospho-CoA protein PF550_09170 IPR023439 Malonate decarboxylase/citrate lyase acyl carrier protein PF550_09170 IPR009662 Malonate decarboxylase delta subunit PF550_09175 IPR034733 Acetyl-CoA carboxylase PF550_09175 IPR029045 ClpP/crotonase-like domain superfamily PF550_09175 IPR011762 Acetyl-coenzyme A carboxyltransferase, N-terminal PF550_09175 IPR017556 Biotin-independent malonate decarboxylase, beta subunit PF550_09180 IPR029045 ClpP/crotonase-like domain superfamily PF550_09180 IPR011763 Acetyl-coenzyme A carboxyltransferase, C-terminal PF550_09180 IPR009648 Biotin-dependent malonate decarboxylase, gamma subunit PF550_09185 IPR017557 Phosphoribosyl-dephospho-CoA transferase PF550_09190 IPR024925 Malonyl CoA-acyl carrier protein transacylase PF550_09190 IPR014043 Acyl transferase PF550_09190 IPR001227 Acyl transferase domain superfamily PF550_09190 IPR016036 Malonyl-CoA ACP transacylase, ACP-binding PF550_09190 IPR016035 Acyl transferase/acyl hydrolase/lysophospholipase PF550_09190 IPR004410 Malonyl CoA-acyl carrier protein transacylase, FabD-type PF550_09205 IPR005119 LysR, substrate-binding PF550_09205 IPR036390 Winged helix DNA-binding domain superfamily PF550_09205 IPR036388 Winged helix-like DNA-binding domain superfamily PF550_09205 IPR000847 Transcription regulator HTH, LysR PF550_09205 IPR037400 Malonate utilization transcriptional regulator, PBP2 domain PF550_09210 IPR036390 Winged helix DNA-binding domain superfamily PF550_09210 IPR036388 Winged helix-like DNA-binding domain superfamily PF550_09210 IPR000524 Transcription regulator HTH, GntR PF550_09210 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 PF550_09210 IPR004839 Aminotransferase, class I/classII PF550_09210 IPR015424 Pyridoxal phosphate-dependent transferase PF550_09210 IPR015421 Pyridoxal phosphate-dependent transferase, major domain PF550_09220 IPR003317 Cytochrome ubiquinol oxidase subunit 2 PF550_09225 IPR002585 Cytochrome ubiquinol oxidase subunit 1 PF550_09240 IPR011251 Luciferase-like domain PF550_09240 IPR036661 Luciferase-like domain superfamily PF550_09240 IPR016215 Nitrilotriacetate monooxygenase component A/pristinamycin IIA synthase subunit A PF550_09245 IPR005828 Major facilitator, sugar transporter-like PF550_09245 IPR020846 Major facilitator superfamily domain PF550_09245 IPR005829 Sugar transporter, conserved site PF550_09245 IPR036259 MFS transporter superfamily PF550_09270 IPR010068 Taurine ABC transporter, substrate-binding protein TauA PF550_09270 IPR007210 ABC-type glycine betaine transport system, substrate-binding domain PF550_09270 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF PF550_09275 IPR015859 ABC transporter, taurine import, TauD PF550_09275 IPR027417 P-loop containing nucleoside triphosphate hydrolase PF550_09275 IPR003439 ABC transporter-like PF550_09275 IPR003593 AAA+ ATPase domain PF550_09275 IPR017871 ABC transporter, conserved site PF550_09280 IPR000515 ABC transporter type 1, transmembrane domain MetI-like PF550_09280 IPR035906 MetI-like superfamily PF550_09285 IPR006189 CHASE domain PF550_09285 IPR042098 Taurine dioxygenase TauD-like superfamily PF550_09285 IPR003819 TauD/TfdA-like domain PF550_09290 IPR015942 Asp/Glu/hydantoin racemase PF550_09295 IPR001248 Purine-cytosine permease PF550_09295 IPR038271 Purine-cytosine permease superfamily PF550_09295 IPR012681 Nucleobase cation symporter-1, NCS1 PF550_09305 IPR036390 Winged helix DNA-binding domain superfamily PF550_09305 IPR036388 Winged helix-like DNA-binding domain superfamily PF550_09305 IPR000847 Transcription regulator HTH, LysR PF550_09305 IPR005119 LysR, substrate-binding PF550_09315 IPR006680 Amidohydrolase-related PF550_09315 IPR006679 Adenine deaminase PF550_09315 IPR032466 Metal-dependent hydrolase PF550_09315 IPR011059 Metal-dependent hydrolase, composite domain superfamily PF550_09315 IPR026912 Adenine deaminase C-terminal domain PF550_09325 IPR036249 Thioredoxin-like superfamily PF550_09325 IPR006660 Arsenate reductase-like PF550_09325 IPR006659 Arsenate reductase PF550_09330 IPR036390 Winged helix DNA-binding domain superfamily PF550_09330 IPR011991 ArsR-like helix-turn-helix domain PF550_09330 IPR001845 HTH ArsR-type DNA-binding domain PF550_09330 IPR036388 Winged helix-like DNA-binding domain superfamily PF550_09335 IPR038770 Sodium/solute symporter superfamily PF550_09335 IPR002657 Bile acid:sodium symporter/arsenical resistance protein Acr3 PF550_09335 IPR004706 Arsenical-resistance protein Acr3 PF550_09340 IPR005119 LysR, substrate-binding PF550_09340 IPR000847 Transcription regulator HTH, LysR PF550_09340 IPR036388 Winged helix-like DNA-binding domain superfamily PF550_09340 IPR036390 Winged helix DNA-binding domain superfamily PF550_09355 IPR008255 Pyridine nucleotide-disulphide oxidoreductase, class-II, active site PF550_09355 IPR002109 Glutaredoxin PF550_09355 IPR036249 Thioredoxin-like superfamily PF550_09355 IPR012336 Thioredoxin-like fold PF550_09355 IPR023753 FAD/NAD(P)-binding domain PF550_09355 IPR012081 Alkyl hydroperoxide reductase subunit F PF550_09355 IPR036188 FAD/NAD(P)-binding domain superfamily PF550_09370 IPR001451 Hexapeptide repeat PF550_09370 IPR042122 Serine acetyltransferase, N-terminal domain superfamily PF550_09370 IPR005881 Serine O-acetyltransferase PF550_09370 IPR011004 Trimeric LpxA-like superfamily PF550_09370 IPR018357 Hexapeptide transferase, conserved site PF550_09375 IPR029028 Alpha/beta knot methyltransferases PF550_09375 IPR004384 RNA methyltransferase TrmJ/LasT PF550_09375 IPR001537 tRNA/rRNA methyltransferase, SpoU type PF550_09375 IPR029026 tRNA (guanine-N1-)-methyltransferase, N-terminal PF550_09380 IPR011708 Bacterial DNA polymerase III, alpha subunit, NTPase domain PF550_09380 IPR041931 Bacterial DNA polymerase III alpha subunit, thumb domain PF550_09380 IPR029460 DNA polymerase, helix-hairpin-helix motif PF550_09380 IPR004365 OB-fold nucleic acid binding domain, AA-tRNA synthetase-type PF550_09380 IPR004013 PHP domain PF550_09380 IPR003141 Polymerase/histidinol phosphatase, N-terminal PF550_09380 IPR016195 Polymerase/histidinol phosphatase-like PF550_09380 IPR004805 DNA polymerase III, alpha subunit PF550_09380 IPR040982 DNA polymerase III alpha subunit finger domain PF550_09385 IPR027475 Asparaginase/glutaminase, active site 2 PF550_09385 IPR006034 Asparaginase/glutaminase-like PF550_09385 IPR036152 Asparaginase/glutaminase-like superfamily PF550_09385 IPR004550 L-asparaginase, type II PF550_09385 IPR027473 L-asparaginase, C-terminal PF550_09385 IPR027474 L-asparaginase, N-terminal PF550_09385 IPR037152 L-asparaginase, N-terminal domain superfamily PF550_09385 IPR020827 Asparaginase/glutaminase, active site 1 PF550_09385 IPR040919 Asparaginase/glutaminase, C-terminal PF550_09390 IPR025668 Transposase DDE domain PF550_09395 IPR036458 Sodium:dicarboxylate symporter superfamily PF550_09395 IPR018107 Sodium:dicarboxylate symporter, conserved site PF550_09395 IPR001991 Sodium:dicarboxylate symporter PF550_09395 IPR023954 C4-dicarboxylate transport protein PF550_09400 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 PF550_09400 IPR015424 Pyridoxal phosphate-dependent transferase PF550_09400 IPR004839 Aminotransferase, class I/classII PF550_09400 IPR015421 Pyridoxal phosphate-dependent transferase, major domain PF550_09405 IPR028427 Peptide methionine sulfoxide reductase PF550_09405 IPR002579 Peptide methionine sulphoxide reductase MrsB PF550_09405 IPR011057 Mss4-like superfamily PF550_09410 IPR000889 Glutathione peroxidase PF550_09410 IPR029759 Glutathione peroxidase active site PF550_09410 IPR029760 Glutathione peroxidase conserved site PF550_09410 IPR036249 Thioredoxin-like superfamily PF550_09415 IPR032783 AraC-type transcription regulator, ligand-binding domain PF550_09415 IPR009057 Homeobox-like domain superfamily PF550_09415 IPR018060 DNA binding HTH domain, AraC-type PF550_09415 IPR014710 RmlC-like jelly roll fold PF550_09415 IPR011051 RmlC-like cupin domain superfamily PF550_09415 IPR020449 Transcription regulator HTH, AraC- type PF550_09425 IPR009057 Homeobox-like domain superfamily PF550_09435 IPR024474 Zinc-finger binding domain of transposase IS66 PF550_09435 IPR024463 Transposase TnpC, homeodomain PF550_09435 IPR039552 Transposase IS66, C-terminal PF550_09435 IPR004291 Transposase, IS66 PF550_09445 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 PF550_09445 IPR015421 Pyridoxal phosphate-dependent transferase, major domain PF550_09445 IPR004839 Aminotransferase, class I/classII PF550_09445 IPR019880 4-dedimethylamino-4-oxo-anhydrotetracycline transaminase OxyQ PF550_09445 IPR015424 Pyridoxal phosphate-dependent transferase PF550_09450 IPR002912 ACT domain PF550_09450 IPR003607 HD/PDEase domain PF550_09450 IPR006674 HD domain PF550_09450 IPR013546 PII-uridylyltransferase/Glutamine-synthetase adenylyltransferase PF550_09450 IPR002934 Polymerase, nucleotidyl transferase domain PF550_09450 IPR010043 Bifunctional uridylyltransferase/uridylyl-removing enzyme PF550_09455 IPR011054 Rudiment single hybrid motif PF550_09455 IPR016185 Pre-ATP-grasp domain superfamily PF550_09455 IPR011761 ATP-grasp fold PF550_09455 IPR005862 Formate-dependent phosphoribosylglycinamide formyltransferase PF550_09455 IPR003135 ATP-grasp fold, ATP-dependent carboxylate-amine ligase-type PF550_09455 IPR013815 ATP-grasp fold, subdomain 1 PF550_09465 IPR008407 Branched-chain amino acid transport, AzlD PF550_09470 IPR011606 Branched-chain amino acid transport, permease PF550_09495 IPR004095 TGS PF550_09495 IPR012675 Beta-grasp domain superfamily PF550_09495 IPR041706 YchF, N-terminal PF550_09495 IPR013029 YchF, C-terminal domain PF550_09495 IPR023192 TGS-like domain superfamily PF550_09495 IPR012676 TGS-like PF550_09495 IPR004396 Ribosome-binding ATPase YchF/Obg-like ATPase 1 PF550_09495 IPR031167 OBG-type guanine nucleotide-binding (G) domain PF550_09495 IPR006073 GTP binding domain PF550_09495 IPR027417 P-loop containing nucleoside triphosphate hydrolase PF550_09500 IPR035906 MetI-like superfamily PF550_09500 IPR000515 ABC transporter type 1, transmembrane domain MetI-like PF550_09505 IPR003593 AAA+ ATPase domain PF550_09505 IPR041701 Methionine import ATP-binding protein MetN, ATP-binding cassette domain PF550_09505 IPR017908 ABC transporter, methionine import, ATP-binding protein, MetN, C-terminal PF550_09505 IPR018449 NIL domain PF550_09505 IPR017871 ABC transporter, conserved site PF550_09505 IPR003439 ABC transporter-like PF550_09505 IPR026253 Methionine import ATP-binding protein MetN PF550_09505 IPR027417 P-loop containing nucleoside triphosphate hydrolase PF550_09510 IPR004872 Lipoprotein NlpA family PF550_09515 IPR004872 Lipoprotein NlpA family PF550_09520 IPR011251 Luciferase-like domain PF550_09520 IPR036661 Luciferase-like domain superfamily PF550_09520 IPR016215 Nitrilotriacetate monooxygenase component A/pristinamycin IIA synthase subunit A PF550_09530 IPR037069 Acyl-CoA dehydrogenase/oxidase, N-terminal domain superfamily PF550_09530 IPR013107 Acyl-CoA dehydrogenase, C-terminal domain PF550_09530 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily PF550_09530 IPR036250 Acyl-CoA dehydrogenase-like, C-terminal PF550_09530 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal PF550_09545 IPR030202 Glutamate/aspartate transport system permease protein GltJ/AatQ PF550_09545 IPR035906 MetI-like superfamily PF550_09545 IPR000515 ABC transporter type 1, transmembrane domain MetI-like PF550_09545 IPR010065 Amino acid ABC transporter, permease protein, 3-TM domain PF550_09550 IPR000515 ABC transporter type 1, transmembrane domain MetI-like PF550_09550 IPR030205 Glutamate/aspartate transport system permease protein GltK/AatM PF550_09550 IPR010065 Amino acid ABC transporter, permease protein, 3-TM domain PF550_09550 IPR035906 MetI-like superfamily PF550_09555 IPR027417 P-loop containing nucleoside triphosphate hydrolase PF550_09555 IPR003439 ABC transporter-like PF550_09555 IPR017871 ABC transporter, conserved site PF550_09555 IPR003593 AAA+ ATPase domain PF550_09555 IPR030679 ABC-type amino acid transport system, ATPase component, HisP-type PF550_09565 IPR011991 ArsR-like helix-turn-helix domain PF550_09565 IPR000485 AsnC-type HTH domain PF550_09565 IPR011008 Dimeric alpha-beta barrel PF550_09565 IPR019888 Transcription regulator AsnC-type PF550_09565 IPR019887 Transcription regulator AsnC/Lrp, ligand binding domain PF550_09565 IPR019885 Transcription regulator HTH, AsnC-type, conserved site PF550_09565 IPR036388 Winged helix-like DNA-binding domain superfamily PF550_09565 IPR036390 Winged helix DNA-binding domain superfamily PF550_09570 IPR026564 Transcriptional regulator TACO1-like, domain 3 PF550_09570 IPR017856 Integrase-like, N-terminal PF550_09570 IPR029072 YebC-like PF550_09570 IPR002876 Transcriptional regulator TACO1-like PF550_09580 IPR001647 DNA-binding HTH domain, TetR-type PF550_09580 IPR023772 DNA-binding HTH domain, TetR-type, conserved site PF550_09580 IPR009057 Homeobox-like domain superfamily PF550_09600 IPR005119 LysR, substrate-binding PF550_09600 IPR036390 Winged helix DNA-binding domain superfamily PF550_09600 IPR000847 Transcription regulator HTH, LysR PF550_09600 IPR036388 Winged helix-like DNA-binding domain superfamily PF550_09610 IPR001248 Purine-cytosine permease PF550_09610 IPR026030 Purine-cytosine permease Fcy2/21/22 PF550_09610 IPR038271 Purine-cytosine permease superfamily PF550_09625 IPR004291 Transposase, IS66 PF550_09625 IPR024463 Transposase TnpC, homeodomain PF550_09625 IPR024474 Zinc-finger binding domain of transposase IS66 PF550_09625 IPR039552 Transposase IS66, C-terminal PF550_09635 IPR009057 Homeobox-like domain superfamily PF550_09660 IPR037224 PapC, N-terminal domain superfamily PF550_09660 IPR000015 Outer membrane usher protein PF550_09660 IPR025949 PapC-like, C-terminal domain PF550_09660 IPR042186 Outer membrane usher protein FimD, plug domain PF550_09660 IPR018030 Fimbrial membrane usher, conserved site PF550_09660 IPR025885 PapC, N-terminal domain PF550_09665 IPR008962 PapD-like superfamily PF550_09665 IPR013783 Immunoglobulin-like fold PF550_09665 IPR036316 Pili assembly chaperone, C-terminal domain superfamily PF550_09665 IPR001829 Pili assembly chaperone, bacterial PF550_09665 IPR016148 Pili assembly chaperone, C-terminal PF550_09665 IPR018046 Pili assembly chaperone, conserved site PF550_09665 IPR016147 Pili assembly chaperone, N-terminal PF550_09670 IPR036937 Fimbrial-type adhesion domain superfamily PF550_09670 IPR039458 FimA-like PF550_09670 IPR008966 Adhesion domain superfamily PF550_09685 IPR007197 Radical SAM PF550_09685 IPR013785 Aldolase-type TIM barrel PF550_09685 IPR006638 Elp3/MiaB/NifB PF550_09685 IPR024177 Biotin synthase PF550_09685 IPR010722 Biotin and thiamin synthesis-associated domain PF550_09685 IPR002684 Biotin synthase/Biotin biosynthesis bifunctional protein BioAB PF550_09690 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain PF550_09690 IPR009051 Alpha-helical ferredoxin PF550_09690 IPR004453 Epoxyqueuosine reductase QueG PF550_09690 IPR013542 Domain of unknown function DUF1730 PF550_09690 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site PF550_09695 IPR036652 YjeF N-terminal domain superfamily PF550_09695 IPR004443 YjeF N-terminal domain PF550_09695 IPR029056 Ribokinase-like PF550_09695 IPR030677 Bifunctional NAD(P)H-hydrate repair enzyme Nnr PF550_09695 IPR000631 ATP-dependent (S)-NAD(P)H-hydrate dehydratase PF550_09700 IPR036397 Ribonuclease H superfamily PF550_09700 IPR012337 Ribonuclease H-like superfamily PF550_09700 IPR002176 Crossover junction endodeoxyribonuclease RuvC PF550_09700 IPR020563 Crossover junction endodeoxyribonuclease RuvC, magnesium-binding site PF550_09710 IPR016181 Acyl-CoA N-acyltransferase PF550_09710 IPR000182 GNAT domain PF550_09715 IPR012338 Beta-lactamase/transpeptidase-like PF550_09715 IPR001460 Penicillin-binding protein, transpeptidase PF550_09725 IPR009057 Homeobox-like domain superfamily PF550_09735 IPR024474 Zinc-finger binding domain of transposase IS66 PF550_09735 IPR024463 Transposase TnpC, homeodomain PF550_09735 IPR004291 Transposase, IS66 PF550_09735 IPR039552 Transposase IS66, C-terminal PF550_09760 IPR022636 S-adenosylmethionine synthetase superfamily PF550_09760 IPR002133 S-adenosylmethionine synthetase PF550_09760 IPR022628 S-adenosylmethionine synthetase, N-terminal PF550_09760 IPR022629 S-adenosylmethionine synthetase, central domain PF550_09760 IPR022630 S-adenosylmethionine synthetase, C-terminal PF550_09760 IPR022631 S-adenosylmethionine synthetase, conserved site PF550_09765 IPR005478 Transketolase, bacterial-like PF550_09765 IPR029061 Thiamin diphosphate-binding fold PF550_09765 IPR020826 Transketolase binding site PF550_09765 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II PF550_09765 IPR005474 Transketolase, N-terminal PF550_09765 IPR033247 Transketolase family PF550_09765 IPR033248 Transketolase, C-terminal domain PF550_09765 IPR005475 Transketolase-like, pyrimidine-binding domain PF550_09775 IPR023480 Uncharacterised protein family UPF0312/YceI PF550_09775 IPR036761 Lipid/polyisoprenoid-binding, YceI-like superfamily PF550_09775 IPR007372 Lipid/polyisoprenoid-binding, YceI-like PF550_09785 IPR018711 Phosphodiester glycosidase PF550_09795 IPR030391 RNA methyltransferase TrmA, conserved site PF550_09795 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase PF550_09795 IPR011869 tRNA/tmRNA (uracil-C(5))-methyltransferase, TrmA PF550_09795 IPR010280 (Uracil-5)-methyltransferase family PF550_09795 IPR030390 RNA methyltransferase TrmA, active site PF550_09800 IPR007344 GrpB/Dephospho-CoA kinase PF550_09805 IPR016160 Aldehyde dehydrogenase, cysteine active site PF550_09805 IPR024090 Proline dehydrogenase PutA, domain I PF550_09805 IPR002872 Proline dehydrogenase domain PF550_09805 IPR024082 Proline dehydrogenase PutA, domain II PF550_09805 IPR024089 Proline dehydrogenase PutA, domain I/II PF550_09805 IPR041349 Proline utilization A proline dehydrogenase N-terminal domain PF550_09805 IPR029041 FAD-linked oxidoreductase-like PF550_09805 IPR005933 Delta-1-pyrroline-5-carboxylate dehydrogenase 3 PF550_09805 IPR010985 Ribbon-helix-helix PF550_09805 IPR013321 Arc-type ribbon-helix-helix PF550_09805 IPR025703 Bifunctional protein PutA PF550_09805 IPR016162 Aldehyde dehydrogenase, N-terminal PF550_09805 IPR029510 Aldehyde dehydrogenase, glutamic acid active site PF550_09805 IPR016163 Aldehyde dehydrogenase, C-terminal PF550_09805 IPR016161 Aldehyde/histidinol dehydrogenase PF550_09805 IPR015590 Aldehyde dehydrogenase domain PF550_09810 IPR019887 Transcription regulator AsnC/Lrp, ligand binding domain PF550_09810 IPR011008 Dimeric alpha-beta barrel PF550_09810 IPR019885 Transcription regulator HTH, AsnC-type, conserved site PF550_09810 IPR036388 Winged helix-like DNA-binding domain superfamily PF550_09810 IPR036390 Winged helix DNA-binding domain superfamily PF550_09810 IPR000485 AsnC-type HTH domain PF550_09810 IPR019888 Transcription regulator AsnC-type PF550_09810 IPR011991 ArsR-like helix-turn-helix domain PF550_09815 IPR011851 Sodium/proline symporter PF550_09815 IPR018212 Sodium/solute symporter, conserved site PF550_09815 IPR001734 Sodium/solute symporter PF550_09815 IPR038377 Sodium/glucose symporter superfamily PF550_09820 IPR029035 DHS-like NAD/FAD-binding domain superfamily PF550_09820 IPR026591 Sirtuin, catalytic core small domain superfamily PF550_09820 IPR027546 Sirtuin, class III PF550_09820 IPR026590 Sirtuin family, catalytic core domain PF550_09820 IPR003000 Sirtuin family PF550_09825 IPR011053 Single hybrid motif PF550_09825 IPR017453 Glycine cleavage system H-protein, subgroup PF550_09825 IPR000089 Biotin/lipoyl attachment PF550_09825 IPR033753 Glycine cleavage system H-protein/Simiate PF550_09825 IPR003016 2-oxo acid dehydrogenase, lipoyl-binding site PF550_09825 IPR002930 Glycine cleavage system H-protein PF550_09830 IPR032687 HTH-type transcriptional regulator AraC-type, N-terminal PF550_09830 IPR009057 Homeobox-like domain superfamily PF550_09830 IPR018060 DNA binding HTH domain, AraC-type PF550_09830 IPR020449 Transcription regulator HTH, AraC- type PF550_09840 IPR003593 AAA+ ATPase domain PF550_09840 IPR036640 ABC transporter type 1, transmembrane domain superfamily PF550_09840 IPR003439 ABC transporter-like PF550_09840 IPR017871 ABC transporter, conserved site PF550_09840 IPR011527 ABC transporter type 1, transmembrane domain PF550_09840 IPR039421 Type I protein exporter PF550_09840 IPR027417 P-loop containing nucleoside triphosphate hydrolase PF550_09845 IPR018636 Protein of unknown function DUF2058 PF550_09850 IPR010699 Protein of unknown function DUF1275 PF550_09855 IPR001991 Sodium:dicarboxylate symporter PF550_09855 IPR036458 Sodium:dicarboxylate symporter superfamily PF550_09855 IPR023025 Serine/threonine transporter SstT PF550_09860 IPR011991 ArsR-like helix-turn-helix domain PF550_09860 IPR001845 HTH ArsR-type DNA-binding domain PF550_09860 IPR036390 Winged helix DNA-binding domain superfamily PF550_09860 IPR036388 Winged helix-like DNA-binding domain superfamily PF550_09870 IPR003347 JmjC domain PF550_09870 IPR039994 JmjC domain-containing PF550_09875 IPR003697 Nucleoside triphosphate pyrophosphatase Maf-like protein PF550_09875 IPR029001 Inosine triphosphate pyrophosphatase-like PF550_09885 IPR036043 Phosphoglycerate kinase superfamily PF550_09885 IPR015824 Phosphoglycerate kinase, N-terminal PF550_09885 IPR015911 Phosphoglycerate kinase, conserved site PF550_09885 IPR001576 Phosphoglycerate kinase PF550_09895 IPR006412 Fructose-bisphosphate aldolase, class II, Calvin cycle subtype PF550_09895 IPR000771 Fructose-bisphosphate aldolase, class-II PF550_09895 IPR013785 Aldolase-type TIM barrel PF550_09900 IPR015391 SurA N-terminal PF550_09900 IPR027304 Trigger factor/SurA domain superfamily PF550_09900 IPR023034 Peptidyl-prolyl isomerase SurA PF550_09900 IPR000297 Peptidyl-prolyl cis-trans isomerase, PpiC-type PF550_09905 IPR007543 LptD, C-terminal PF550_09905 IPR020889 LPS-assembly protein LptD PF550_09905 IPR005653 Organic solvent tolerance-like, N-terminal PF550_09910 IPR011009 Protein kinase-like domain superfamily PF550_09910 IPR002575 Aminoglycoside phosphotransferase PF550_09915 IPR029044 Nucleotide-diphospho-sugar transferases PF550_09915 IPR005835 Nucleotidyl transferase domain PF550_09920 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase PF550_09920 IPR003682 rRNA small subunit methyltransferase G PF550_09925 IPR027417 P-loop containing nucleoside triphosphate hydrolase PF550_09925 IPR025669 AAA domain PF550_09930 IPR041468 ParB/Spo0J, HTH domain PF550_09930 IPR004437 ParB/RepB/Spo0J partition protein PF550_09930 IPR003115 ParB/Sulfiredoxin PF550_09930 IPR036086 ParB/Sulfiredoxin superfamily PF550_09935 IPR002898 MotA/TolQ/ExbB proton channel PF550_09945 IPR003439 ABC transporter-like PF550_09945 IPR039421 Type I protein exporter PF550_09945 IPR027417 P-loop containing nucleoside triphosphate hydrolase PF550_09945 IPR011917 ABC transporter, lipid A export, MsbA PF550_09945 IPR017871 ABC transporter, conserved site PF550_09945 IPR036640 ABC transporter type 1, transmembrane domain superfamily PF550_09945 IPR011527 ABC transporter type 1, transmembrane domain PF550_09945 IPR003593 AAA+ ATPase domain PF550_09950 IPR003758 Tetraacyldisaccharide 4'-kinase PF550_09950 IPR027417 P-loop containing nucleoside triphosphate hydrolase PF550_09955 IPR004528 3-deoxy-D-manno-octulosonate cytidylyltransferase PF550_09955 IPR029044 Nucleotide-diphospho-sugar transferases PF550_09955 IPR003329 Acylneuraminate cytidylyltransferase PF550_09960 IPR027417 P-loop containing nucleoside triphosphate hydrolase PF550_09960 IPR015199 DNA polymerase III, delta subunit, C-terminal PF550_09960 IPR004622 DNA polymerase III, delta prime subunit PF550_09970 IPR001130 TatD family PF550_09970 IPR032466 Metal-dependent hydrolase PF550_09970 IPR015991 Uncharacterised hydrolase TatD-type PF550_09970 IPR018228 Deoxyribonuclease, TatD-related, conserved site PF550_09985 IPR003413 Type II secretion system protein I domain PF550_09985 IPR010052 Type II secretion system protein I PF550_09985 IPR012902 Prokaryotic N-terminal methylation site PF550_09990 IPR012902 Prokaryotic N-terminal methylation site PF550_09990 IPR010055 Type II secretion system protein J PF550_09995 IPR038072 GspK, central domain superfamily PF550_09995 IPR005628 General secretion pathway protein K PF550_10005 IPR005122 Uracil-DNA glycosylase-like PF550_10005 IPR036895 Uracil-DNA glycosylase-like domain superfamily PF550_10005 IPR018085 Uracil-DNA glycosylase, active site PF550_10005 IPR002043 Uracil-DNA glycosylase family 1 PF550_10015 IPR016193 Cytidine deaminase-like PF550_10015 IPR028883 tRNA-specific adenosine deaminase PF550_10015 IPR002125 Cytidine and deoxycytidylate deaminase domain PF550_10015 IPR016192 APOBEC/CMP deaminase, zinc-binding PF550_10025 IPR027417 P-loop containing nucleoside triphosphate hydrolase PF550_10025 IPR011994 Cytidylate kinase domain PF550_10025 IPR003136 Cytidylate kinase PF550_10030 IPR022967 RNA-binding domain, S1 PF550_10030 IPR000110 Ribosomal protein S1 PF550_10030 IPR012340 Nucleic acid-binding, OB-fold PF550_10030 IPR003029 S1 domain PF550_10035 IPR000119 Histone-like DNA-binding protein PF550_10035 IPR005685 Integration host factor, beta subunit PF550_10035 IPR010992 Integration host factor (IHF)-like DNA-binding domain superfamily PF550_10035 IPR020816 Histone-like DNA-binding protein, conserved site PF550_10045 IPR011060 Ribulose-phosphate binding barrel PF550_10045 IPR001754 Orotidine 5'-phosphate decarboxylase domain PF550_10045 IPR014732 Orotidine 5'-phosphate decarboxylase PF550_10045 IPR013785 Aldolase-type TIM barrel PF550_10045 IPR018089 Orotidine 5'-phosphate decarboxylase, active site PF550_10055 IPR020946 Flavin monooxygenase-like PF550_10055 IPR036188 FAD/NAD(P)-binding domain superfamily PF550_10065 IPR005654 ATPase, AFG1-like PF550_10065 IPR030870 Cell division protein ZapE PF550_10065 IPR027417 P-loop containing nucleoside triphosphate hydrolase PF550_10070 IPR023310 Malate synthase G, beta sub-domain PF550_10070 IPR001465 Malate synthase PF550_10070 IPR006253 Malate synthase G PF550_10070 IPR011076 Malate synthase-like superfamily PF550_10080 IPR003400 Biopolymer transport protein ExbD/TolR PF550_10085 IPR003400 Biopolymer transport protein ExbD/TolR PF550_10090 IPR002898 MotA/TolQ/ExbB proton channel PF550_10120 IPR024077 Neurolysin/Thimet oligopeptidase, domain 2 PF550_10120 IPR001567 Peptidase M3A/M3B catalytic domain PF550_10125 IPR035906 MetI-like superfamily PF550_10125 IPR000515 ABC transporter type 1, transmembrane domain MetI-like PF550_10130 IPR000515 ABC transporter type 1, transmembrane domain MetI-like PF550_10130 IPR035906 MetI-like superfamily PF550_10135 IPR003593 AAA+ ATPase domain PF550_10135 IPR017871 ABC transporter, conserved site PF550_10135 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal PF550_10135 IPR027417 P-loop containing nucleoside triphosphate hydrolase PF550_10135 IPR003439 ABC transporter-like PF550_10150 IPR006240 3'(2'),5'-bisphosphate nucleotidase CysQ PF550_10150 IPR020583 Inositol monophosphatase, metal-binding site PF550_10150 IPR000760 Inositol monophosphatase-like PF550_10150 IPR020550 Inositol monophosphatase, conserved site PF550_10160 IPR002583 Ribosomal protein S20 PF550_10160 IPR036510 Ribosomal protein S20 superfamily PF550_10165 IPR000534 Semialdehyde dehydrogenase, NAD-binding PF550_10165 IPR016040 NAD(P)-binding domain PF550_10165 IPR036291 NAD(P)-binding domain superfamily PF550_10170 IPR036704 Ribonuclease E inhibitor RraA/RraA-like superfamily PF550_10170 IPR005493 Ribonuclease E inhibitor RraA/RraA-like protein PF550_10170 IPR010203 Regulator of ribonuclease activity A PF550_10190 IPR011545 DEAD/DEAH box helicase domain PF550_10190 IPR003711 CarD-like/TRCF domain PF550_10190 IPR036101 CarD-like/TRCF domain superfamily PF550_10190 IPR004576 Transcription-repair coupling factor PF550_10190 IPR041471 UvrB, interaction domain PF550_10190 IPR005118 Transcription-repair-coupling factor, C-terminal domain PF550_10190 IPR037235 TRCF-like, C-terminal domain PF550_10190 IPR027417 P-loop containing nucleoside triphosphate hydrolase PF550_10190 IPR014001 Helicase superfamily 1/2, ATP-binding domain PF550_10190 IPR001650 Helicase, C-terminal PF550_10200 IPR029787 Nucleotide cyclase PF550_10200 IPR001054 Adenylyl cyclase class-3/4/guanylyl cyclase PF550_10205 IPR024474 Zinc-finger binding domain of transposase IS66 PF550_10205 IPR024463 Transposase TnpC, homeodomain PF550_10205 IPR004291 Transposase, IS66 PF550_10205 IPR039552 Transposase IS66, C-terminal PF550_10215 IPR009057 Homeobox-like domain superfamily PF550_10220 IPR036010 2Fe-2S ferredoxin-like superfamily PF550_10220 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain PF550_10220 IPR001055 Adrenodoxin PF550_10220 IPR018298 Adrenodoxin, iron-sulphur binding site PF550_10220 IPR012675 Beta-grasp domain superfamily PF550_10220 IPR011536 Ferredoxin 2Fe-2S type, proteobacteria PF550_10225 IPR029047 Heat shock protein 70kD, peptide-binding domain superfamily PF550_10225 IPR013126 Heat shock protein 70 family PF550_10225 IPR010236 ISC system FeS cluster assembly, HscA chaperone PF550_10225 IPR042039 HscA chaperone, nucleotide-binding domain PF550_10225 IPR029048 Heat shock protein 70kD, C-terminal domain superfamily PF550_10225 IPR018181 Heat shock protein 70, conserved site PF550_10230 IPR009073 Co-chaperone HscB, C-terminal oligomerisation domain PF550_10230 IPR001623 DnaJ domain PF550_10230 IPR004640 Co-chaperone Hsc20 PF550_10230 IPR036386 HscB, C-terminal domain superfamily PF550_10230 IPR036869 Chaperone J-domain superfamily PF550_10235 IPR011302 Iron-binding protein IscA, proteobacteria PF550_10235 IPR035903 HesB-like domain superfamily PF550_10235 IPR000361 FeS cluster biogenesis PF550_10235 IPR016092 FeS cluster insertion protein PF550_10235 IPR017870 FeS cluster insertion, C-terminal, conserved site PF550_10240 IPR011339 ISC system FeS cluster assembly, IscU scaffold PF550_10240 IPR002871 NIF system FeS cluster assembly, NifU, N-terminal PF550_10245 IPR015424 Pyridoxal phosphate-dependent transferase PF550_10245 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 PF550_10245 IPR015421 Pyridoxal phosphate-dependent transferase, major domain PF550_10245 IPR016454 Cysteine desulfurase PF550_10245 IPR010240 Cysteine desulfurase IscS PF550_10245 IPR000192 Aminotransferase class V domain PF550_10245 IPR020578 Aminotransferase class-V, pyridoxal-phosphate binding site PF550_10250 IPR036388 Winged helix-like DNA-binding domain superfamily PF550_10250 IPR010242 Transcription factor HTH, IscR PF550_10250 IPR030489 Transcription regulator Rrf2-type, conserved site PF550_10250 IPR000944 Transcription regulator Rrf2-type PF550_10250 IPR036390 Winged helix DNA-binding domain superfamily PF550_10265 IPR010992 Integration host factor (IHF)-like DNA-binding domain superfamily PF550_10265 IPR020816 Histone-like DNA-binding protein, conserved site PF550_10265 IPR000119 Histone-like DNA-binding protein PF550_10270 IPR023058 Peptidyl-prolyl cis-trans isomerase, PpiC-type, conserved site PF550_10270 IPR000297 Peptidyl-prolyl cis-trans isomerase, PpiC-type PF550_10270 IPR023034 Peptidyl-prolyl isomerase SurA PF550_10270 IPR027304 Trigger factor/SurA domain superfamily PF550_10270 IPR015391 SurA N-terminal PF550_10275 IPR018062 HTH domain AraC-type, conserved site PF550_10275 IPR014710 RmlC-like jelly roll fold PF550_10275 IPR018060 DNA binding HTH domain, AraC-type PF550_10275 IPR009057 Homeobox-like domain superfamily PF550_10275 IPR011051 RmlC-like cupin domain superfamily PF550_10275 IPR020449 Transcription regulator HTH, AraC- type PF550_10275 IPR032783 AraC-type transcription regulator, ligand-binding domain PF550_10280 IPR033885 Alkane/xylene monooxygenase PF550_10280 IPR005804 Fatty acid desaturase domain PF550_10285 IPR006089 Acyl-CoA dehydrogenase, conserved site PF550_10285 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal PF550_10285 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily PF550_10285 IPR037069 Acyl-CoA dehydrogenase/oxidase, N-terminal domain superfamily PF550_10285 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal PF550_10285 IPR036250 Acyl-CoA dehydrogenase-like, C-terminal PF550_10285 IPR006091 Acyl-CoA oxidase/dehydrogenase, central domain PF550_10290 IPR006089 Acyl-CoA dehydrogenase, conserved site PF550_10290 IPR006091 Acyl-CoA oxidase/dehydrogenase, central domain PF550_10290 IPR036250 Acyl-CoA dehydrogenase-like, C-terminal PF550_10290 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal PF550_10290 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal PF550_10290 IPR037069 Acyl-CoA dehydrogenase/oxidase, N-terminal domain superfamily PF550_10290 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily PF550_10295 IPR011009 Protein kinase-like domain superfamily PF550_10295 IPR004147 UbiB domain PF550_10305 IPR007214 YbaK/aminoacyl-tRNA synthetase-associated domain PF550_10305 IPR036754 YbaK/aminoacyl-tRNA synthetase-associated domain superfamily PF550_10305 IPR004369 Prolyl-tRNA editing protein, YbaK/EbsC PF550_10310 IPR007310 Aerobactin siderophore biosynthesis, IucA/IucC, N-terminal PF550_10310 IPR022770 Ferric iron reductase FhuF domain PF550_10310 IPR037455 Aerobactin siderophore biosynthesis, IucA/IucC-like PF550_10315 IPR025700 L-lysine 6-monooxygenase/L-ornithine 5-monooxygenase PF550_10315 IPR036188 FAD/NAD(P)-binding domain superfamily PF550_10315 IPR031043 Putative histamine N-monooxygenase PF550_10320 IPR004638 Drug resistance transporter EmrB-like PF550_10320 IPR011701 Major facilitator superfamily PF550_10320 IPR020846 Major facilitator superfamily domain PF550_10320 IPR036259 MFS transporter superfamily PF550_10325 IPR007310 Aerobactin siderophore biosynthesis, IucA/IucC, N-terminal PF550_10325 IPR022770 Ferric iron reductase FhuF domain PF550_10325 IPR037455 Aerobactin siderophore biosynthesis, IucA/IucC-like PF550_10330 IPR022770 Ferric iron reductase FhuF domain PF550_10330 IPR037455 Aerobactin siderophore biosynthesis, IucA/IucC-like PF550_10330 IPR007310 Aerobactin siderophore biosynthesis, IucA/IucC, N-terminal PF550_10340 IPR014165 4-carboxy-4-hydroxy-2-oxoadipate aldolase/oxaloacetate decarboxylase PF550_10340 IPR005493 Ribonuclease E inhibitor RraA/RraA-like protein PF550_10340 IPR036704 Ribonuclease E inhibitor RraA/RraA-like superfamily PF550_10345 IPR010917 TonB-dependent receptor, conserved site PF550_10345 IPR039426 Vitamin B12 transporter BtuB-like PF550_10345 IPR012910 TonB-dependent receptor, plug domain PF550_10345 IPR037066 TonB-dependent receptor, plug domain superfamily PF550_10345 IPR000531 TonB-dependent receptor-like, beta-barrel PF550_10345 IPR010916 TonB box, conserved site PF550_10345 IPR036942 TonB-dependent receptor-like, beta-barrel domain superfamily PF550_10345 IPR010105 TonB-dependent siderophore receptor PF550_10370 IPR023198 Phosphoglycolate phosphatase-like, domain 2 PF550_10370 IPR041492 Haloacid dehalogenase-like hydrolase PF550_10370 IPR006439 HAD hydrolase, subfamily IA PF550_10370 IPR023214 HAD superfamily PF550_10370 IPR010976 Beta-phosphoglucomutase hydrolase PF550_10370 IPR036412 HAD-like superfamily PF550_10380 IPR027417 P-loop containing nucleoside triphosphate hydrolase PF550_10380 IPR003203 Cobinamide kinase/cobinamide phosphate guanyltransferase PF550_10385 IPR036087 Nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase-like superfamily PF550_10385 IPR023195 Nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase, N-terminal PF550_10385 IPR017846 Nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase, prokaryotic PF550_10385 IPR003200 Nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase-like PF550_10400 IPR003805 Adenosylcobinamide-GDP ribazoletransferase PF550_10405 IPR013785 Aldolase-type TIM barrel PF550_10405 IPR006218 DAHP synthetase I/KDSA PF550_10405 IPR006219 DHAP synthase, class 1 PF550_10410 IPR002781 Transmembrane protein TauE-like PF550_10430 IPR010105 TonB-dependent siderophore receptor PF550_10430 IPR010916 TonB box, conserved site PF550_10430 IPR010917 TonB-dependent receptor, conserved site PF550_10430 IPR036942 TonB-dependent receptor-like, beta-barrel domain superfamily PF550_10430 IPR000531 TonB-dependent receptor-like, beta-barrel PF550_10430 IPR012910 TonB-dependent receptor, plug domain PF550_10430 IPR037066 TonB-dependent receptor, plug domain superfamily PF550_10430 IPR039423 TonB-dependent receptor-like PF550_10435 IPR003835 Glycosyl transferase, family 19 PF550_10445 IPR032317 RND efflux pump, membrane fusion protein, barrel-sandwich domain PF550_10450 IPR027417 P-loop containing nucleoside triphosphate hydrolase PF550_10450 IPR003593 AAA+ ATPase domain PF550_10450 IPR003439 ABC transporter-like PF550_10450 IPR017871 ABC transporter, conserved site PF550_10455 IPR000412 ABC-2 transporter PF550_10460 IPR000412 ABC-2 transporter PF550_10480 IPR009057 Homeobox-like domain superfamily PF550_10490 IPR024463 Transposase TnpC, homeodomain PF550_10490 IPR024474 Zinc-finger binding domain of transposase IS66 PF550_10490 IPR004291 Transposase, IS66 PF550_10490 IPR039552 Transposase IS66, C-terminal PF550_10500 IPR039384 HINT family PF550_10500 IPR019808 Histidine triad, conserved site PF550_10500 IPR001310 Histidine triad (HIT) protein PF550_10500 IPR011146 HIT-like domain PF550_10500 IPR036265 HIT-like superfamily PF550_10530 IPR013216 Methyltransferase type 11 PF550_10530 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase PF550_10535 IPR029058 Alpha/Beta hydrolase fold PF550_10535 IPR000073 Alpha/beta hydrolase fold-1 PF550_10535 IPR010125 Poly(R)-hydroxyalkanoic acid synthase, class III, PhaC subunit PF550_10540 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 PF550_10540 IPR000277 Cys/Met metabolism, pyridoxal phosphate-dependent enzyme PF550_10540 IPR006234 O-succinylhomoserine sulfhydrylase PF550_10540 IPR015424 Pyridoxal phosphate-dependent transferase PF550_10540 IPR015421 Pyridoxal phosphate-dependent transferase, major domain PF550_10550 IPR036894 Nucleoid-associated protein YbaB-like domain superfamily PF550_10550 IPR004401 Nucleoid-associated protein YbaB/EbfC family PF550_10555 IPR000093 DNA recombination protein RecR PF550_10555 IPR023627 Recombination protein RecR PF550_10555 IPR023628 Recombination protein RecR, C4-type zinc finger PF550_10555 IPR015967 Recombination protein RecR, conserved site PF550_10555 IPR006171 TOPRIM domain PF550_10555 IPR034137 RecR, TOPRIM domain PF550_10560 IPR010997 HRDC-like superfamily PF550_10560 IPR002562 3'-5' exonuclease domain PF550_10560 IPR002121 HRDC domain PF550_10560 IPR006292 Ribonuclease D PF550_10560 IPR012337 Ribonuclease H-like superfamily PF550_10560 IPR036397 Ribonuclease H superfamily PF550_10580 IPR038068 YcgL-like superfamily PF550_10580 IPR027354 YcgL domain PF550_10590 IPR005936 Peptidase, FtsH PF550_10590 IPR041569 AAA ATPase, AAA+ lid domain PF550_10590 IPR027417 P-loop containing nucleoside triphosphate hydrolase PF550_10590 IPR003959 ATPase, AAA-type, core PF550_10590 IPR000642 Peptidase M41 PF550_10590 IPR003593 AAA+ ATPase domain PF550_10590 IPR037219 Peptidase M41-like PF550_10600 IPR001926 Pyridoxal-phosphate dependent enzyme PF550_10600 IPR006653 Tryptophan synthase, beta chain, conserved site PF550_10600 IPR006654 Tryptophan synthase, beta chain PF550_10600 IPR023026 Tryptophan synthase beta chain/beta chain-like PF550_10600 IPR036052 Tryptophan synthase beta subunit-like PLP-dependent enzyme PF550_10605 IPR007848 Methyltransferase small domain PF550_10605 IPR002052 DNA methylase, N-6 adenine-specific, conserved site PF550_10605 IPR004556 Methyltransferase HemK-like PF550_10605 IPR017127 Ribosomal protein L3-specific, glutamine-N5-methyltransferase PF550_10605 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase PF550_10610 IPR020541 Chorismate synthase, conserved site PF550_10610 IPR035904 Chorismate synthase AroC superfamily PF550_10610 IPR000453 Chorismate synthase PF550_10615 IPR009057 Homeobox-like domain superfamily PF550_10625 IPR039552 Transposase IS66, C-terminal PF550_10625 IPR004291 Transposase, IS66 PF550_10625 IPR024463 Transposase TnpC, homeodomain PF550_10625 IPR024474 Zinc-finger binding domain of transposase IS66 PF550_10630 IPR000160 GGDEF domain PF550_10630 IPR029787 Nucleotide cyclase PF550_10630 IPR000014 PAS domain PF550_10630 IPR000700 PAS-associated, C-terminal PF550_10630 IPR035965 PAS domain superfamily PF550_10630 IPR013656 PAS fold-4 PF550_10645 IPR003698 Lipoyl synthase PF550_10645 IPR006638 Elp3/MiaB/NifB PF550_10645 IPR013785 Aldolase-type TIM barrel PF550_10645 IPR007197 Radical SAM PF550_10650 IPR001017 Dehydrogenase, E1 component PF550_10650 IPR029061 Thiamin diphosphate-binding fold PF550_10655 IPR029061 Thiamin diphosphate-binding fold PF550_10655 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II PF550_10655 IPR005475 Transketolase-like, pyrimidine-binding domain PF550_10655 IPR033248 Transketolase, C-terminal domain PF550_10660 IPR003016 2-oxo acid dehydrogenase, lipoyl-binding site PF550_10660 IPR001078 2-oxoacid dehydrogenase acyltransferase, catalytic domain PF550_10660 IPR000089 Biotin/lipoyl attachment PF550_10660 IPR023213 Chloramphenicol acetyltransferase-like domain superfamily PF550_10660 IPR036625 E3-binding domain superfamily PF550_10660 IPR006257 Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex PF550_10660 IPR004167 Peripheral subunit-binding domain PF550_10660 IPR011053 Single hybrid motif PF550_10665 IPR012999 Pyridine nucleotide-disulphide oxidoreductase, class I, active site PF550_10665 IPR004099 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain PF550_10665 IPR001100 Pyridine nucleotide-disulphide oxidoreductase, class I PF550_10665 IPR023753 FAD/NAD(P)-binding domain PF550_10665 IPR016156 FAD/NAD-linked reductase, dimerisation domain superfamily PF550_10665 IPR036188 FAD/NAD(P)-binding domain superfamily PF550_10665 IPR006258 Dihydrolipoamide dehydrogenase PF550_10670 IPR014007 Acetoin reductase PF550_10670 IPR036291 NAD(P)-binding domain superfamily PF550_10670 IPR020904 Short-chain dehydrogenase/reductase, conserved site PF550_10670 IPR002347 Short-chain dehydrogenase/reductase SDR PF550_10675 IPR020843 Polyketide synthase, enoylreductase domain PF550_10675 IPR002328 Alcohol dehydrogenase, zinc-type, conserved site PF550_10675 IPR011032 GroES-like superfamily PF550_10675 IPR036291 NAD(P)-binding domain superfamily PF550_10675 IPR013154 Alcohol dehydrogenase, N-terminal PF550_10675 IPR013149 Alcohol dehydrogenase, C-terminal PF550_10680 IPR021134 Bestrophin/UPF0187 PF550_10685 IPR001789 Signal transduction response regulator, receiver domain PF550_10685 IPR003593 AAA+ ATPase domain PF550_10685 IPR011006 CheY-like superfamily PF550_10685 IPR009057 Homeobox-like domain superfamily PF550_10685 IPR027417 P-loop containing nucleoside triphosphate hydrolase PF550_10685 IPR025943 Sigma-54 interaction domain, ATP-binding site 2 PF550_10685 IPR002078 RNA polymerase sigma factor 54 interaction domain PF550_10685 IPR002197 DNA binding HTH domain, Fis-type PF550_10685 IPR025944 Sigma-54 interaction domain, conserved site PF550_10685 IPR010114 DNA-binding transcriptional regulator NtrC PF550_10690 IPR029021 Protein-tyrosine phosphatase-like PF550_10690 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like PF550_10690 IPR005939 Beta-lactamase hydrolase-like PF550_10690 IPR001279 Metallo-beta-lactamase PF550_10705 IPR002781 Transmembrane protein TauE-like PF550_10720 IPR010499 Bacterial transcription activator, effector binding PF550_10720 IPR029442 GyrI-like small molecule binding domain PF550_10720 IPR009057 Homeobox-like domain superfamily PF550_10720 IPR018060 DNA binding HTH domain, AraC-type PF550_10720 IPR018062 HTH domain AraC-type, conserved site PF550_10720 IPR011256 Regulatory factor, effector binding domain superfamily PF550_10720 IPR020449 Transcription regulator HTH, AraC- type PF550_10725 IPR002577 Helix-turn-helix, HxlR type PF550_10725 IPR036390 Winged helix DNA-binding domain superfamily PF550_10725 IPR036388 Winged helix-like DNA-binding domain superfamily PF550_10730 IPR023048 NADH-azoreductase, FMN-dependent PF550_10730 IPR003680 Flavodoxin-like fold PF550_10730 IPR029039 Flavoprotein-like superfamily PF550_10735 IPR003370 Chromate transporter PF550_10735 IPR014047 Chromate transporter, long chain PF550_10740 IPR028978 Chorismate pyruvate-lyase/UbiC transcription regulator-associated domain superfamily PF550_10740 IPR000524 Transcription regulator HTH, GntR PF550_10740 IPR011663 UbiC transcription regulator-associated PF550_10740 IPR036388 Winged helix-like DNA-binding domain superfamily PF550_10740 IPR036390 Winged helix DNA-binding domain superfamily PF550_10755 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF PF550_10755 IPR007210 ABC-type glycine betaine transport system, substrate-binding domain PF550_10755 IPR010068 Taurine ABC transporter, substrate-binding protein TauA PF550_10760 IPR000515 ABC transporter type 1, transmembrane domain MetI-like PF550_10760 IPR035906 MetI-like superfamily PF550_10760 IPR005889 Nitrate transport permease PF550_10765 IPR015859 ABC transporter, taurine import, TauD PF550_10765 IPR003593 AAA+ ATPase domain PF550_10765 IPR003439 ABC transporter-like PF550_10765 IPR017871 ABC transporter, conserved site PF550_10765 IPR027417 P-loop containing nucleoside triphosphate hydrolase PF550_10780 IPR020846 Major facilitator superfamily domain PF550_10780 IPR005828 Major facilitator, sugar transporter-like PF550_10780 IPR036259 MFS transporter superfamily PF550_10780 IPR004736 MFS transporter, metabolite:H symporter PF550_10780 IPR005829 Sugar transporter, conserved site PF550_10785 IPR010105 TonB-dependent siderophore receptor PF550_10785 IPR000531 TonB-dependent receptor-like, beta-barrel PF550_10785 IPR036942 TonB-dependent receptor-like, beta-barrel domain superfamily PF550_10785 IPR010916 TonB box, conserved site PF550_10785 IPR010917 TonB-dependent receptor, conserved site PF550_10785 IPR037066 TonB-dependent receptor, plug domain superfamily PF550_10785 IPR012910 TonB-dependent receptor, plug domain PF550_10785 IPR030149 TonB-dependent siderophore receptor FcuA/FatA PF550_10785 IPR039423 TonB-dependent receptor-like PF550_10790 IPR004708 Aspartate ammonia-lyase PF550_10790 IPR024083 Fumarase/histidase, N-terminal PF550_10790 IPR018951 Fumarase C, C-terminal PF550_10790 IPR020557 Fumarate lyase, conserved site PF550_10790 IPR000362 Fumarate lyase family PF550_10790 IPR022761 Fumarate lyase, N-terminal PF550_10790 IPR008948 L-Aspartase-like PF550_10805 IPR036390 Winged helix DNA-binding domain superfamily PF550_10805 IPR036388 Winged helix-like DNA-binding domain superfamily PF550_10805 IPR000847 Transcription regulator HTH, LysR PF550_10805 IPR005119 LysR, substrate-binding PF550_10810 IPR005119 LysR, substrate-binding PF550_10810 IPR000847 Transcription regulator HTH, LysR PF550_10810 IPR036388 Winged helix-like DNA-binding domain superfamily PF550_10810 IPR036390 Winged helix DNA-binding domain superfamily PF550_10815 IPR020617 Thiolase, C-terminal PF550_10815 IPR002155 Thiolase PF550_10815 IPR016039 Thiolase-like PF550_10815 IPR020615 Thiolase, acyl-enzyme intermediate active site PF550_10815 IPR020610 Thiolase, active site PF550_10815 IPR020613 Thiolase, conserved site PF550_10815 IPR020616 Thiolase, N-terminal PF550_10820 IPR006160 Short chain fatty acid transporter AtoE PF550_10820 IPR006161 Conserved hypothetical protein CHP00336 PF550_10825 IPR004165 Coenzyme A transferase family I PF550_10825 IPR037171 NagB/RpiA transferase-like PF550_10825 IPR004164 Coenzyme A transferase active site PF550_10825 IPR012791 3-oxoacid CoA-transferase, subunit B PF550_10830 IPR012792 3-oxoacid CoA-transferase, subunit A PF550_10830 IPR004165 Coenzyme A transferase family I PF550_10830 IPR004163 Coenzyme A transferase binding site PF550_10830 IPR037171 NagB/RpiA transferase-like PF550_10835 IPR036388 Winged helix-like DNA-binding domain superfamily PF550_10835 IPR036390 Winged helix DNA-binding domain superfamily PF550_10835 IPR005119 LysR, substrate-binding PF550_10835 IPR000847 Transcription regulator HTH, LysR PF550_10855 IPR036271 Tetracyclin repressor-like, C-terminal domain superfamily PF550_10855 IPR009057 Homeobox-like domain superfamily PF550_10855 IPR001647 DNA-binding HTH domain, TetR-type PF550_10865 IPR003474 Gluconate transporter PF550_10870 IPR011294 3-hydroxybutyrate dehydrogenase PF550_10870 IPR020904 Short-chain dehydrogenase/reductase, conserved site PF550_10870 IPR002347 Short-chain dehydrogenase/reductase SDR PF550_10870 IPR036291 NAD(P)-binding domain superfamily PF550_10875 IPR009057 Homeobox-like domain superfamily PF550_10875 IPR018060 DNA binding HTH domain, AraC-type PF550_10875 IPR009594 Transcription regulator HTH, AraC, N-terminal PF550_10880 IPR020846 Major facilitator superfamily domain PF550_10880 IPR036259 MFS transporter superfamily PF550_10880 IPR005829 Sugar transporter, conserved site PF550_10880 IPR011701 Major facilitator superfamily PF550_10880 IPR004746 Major facilitator superfamily, aromatic acid:H+ symporter family PF550_10885 IPR029058 Alpha/Beta hydrolase fold PF550_10885 IPR002925 Dienelactone hydrolase PF550_10890 IPR020904 Short-chain dehydrogenase/reductase, conserved site PF550_10890 IPR002347 Short-chain dehydrogenase/reductase SDR PF550_10890 IPR036291 NAD(P)-binding domain superfamily PF550_10900 IPR002563 Flavin reductase like domain PF550_10900 IPR036388 Winged helix-like DNA-binding domain superfamily PF550_10900 IPR012349 FMN-binding split barrel PF550_10900 IPR036390 Winged helix DNA-binding domain superfamily PF550_10910 IPR035418 Transcription regulator HTH, AraC- type, ligand binding domain-like PF550_10910 IPR009057 Homeobox-like domain superfamily PF550_10910 IPR037923 Transcription regulator HTH-like PF550_10910 IPR018060 DNA binding HTH domain, AraC-type PF550_10910 IPR018062 HTH domain AraC-type, conserved site PF550_10915 IPR017938 Riboflavin synthase-like beta-barrel PF550_10915 IPR001433 Oxidoreductase FAD/NAD(P)-binding PF550_10915 IPR039261 Ferredoxin-NADP reductase (FNR), nucleotide-binding domain PF550_10915 IPR008333 Flavoprotein pyridine nucleotide cytochrome reductase-like, FAD-binding domain PF550_10915 IPR012675 Beta-grasp domain superfamily PF550_10915 IPR006058 2Fe-2S ferredoxin, iron-sulphur binding site PF550_10915 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain PF550_10915 IPR017927 FAD-binding domain, ferredoxin reductase-type PF550_10915 IPR036010 2Fe-2S ferredoxin-like superfamily PF550_10920 IPR032710 NTF2-like domain superfamily PF550_10920 IPR000391 Ring-hydroxylating dioxygenase beta subunit PF550_10920 IPR017640 Anthranilate 1,2-dioxygenase, small subunit PF550_10925 IPR001663 Aromatic-ring-hydroxylating dioxygenase, alpha subunit PF550_10925 IPR017638 Anthranilate 1,2-dioxygenase, large subunit PF550_10925 IPR017941 Rieske [2Fe-2S] iron-sulphur domain PF550_10925 IPR036922 Rieske [2Fe-2S] iron-sulphur domain superfamily PF550_10925 IPR015881 Aromatic-ring-hydroxylating dioxygenase, 2Fe-2S-binding site PF550_10925 IPR015879 Aromatic-ring-hydroxylating dioxygenase, alpha subunit, C-terminal domain PF550_10930 IPR036390 Winged helix DNA-binding domain superfamily PF550_10930 IPR000847 Transcription regulator HTH, LysR PF550_10930 IPR005116 Transport-associated OB, type 1 PF550_10930 IPR004606 Molybdenum-pterin binding PF550_10930 IPR003725 Molybdenum-binding protein ModE, N-terminal PF550_10930 IPR016462 Molybdate-dependent transcriptional regulator ModE PF550_10930 IPR008995 Molybdate/tungstate binding, C-terminal PF550_10930 IPR036388 Winged helix-like DNA-binding domain superfamily PF550_10935 IPR005950 Molybdate ABC transporter, substrate-binding protein PF550_10940 IPR000515 ABC transporter type 1, transmembrane domain MetI-like PF550_10940 IPR035906 MetI-like superfamily PF550_10940 IPR011867 Molybdate ABC transporter, permease protein PF550_10945 IPR017871 ABC transporter, conserved site PF550_10945 IPR015852 ABC transporter, molybdenum import, ModC PF550_10945 IPR008995 Molybdate/tungstate binding, C-terminal PF550_10945 IPR004606 Molybdenum-pterin binding PF550_10945 IPR027417 P-loop containing nucleoside triphosphate hydrolase PF550_10945 IPR003439 ABC transporter-like PF550_10945 IPR005116 Transport-associated OB, type 1 PF550_10945 IPR011868 Molybdate ABC transporter, ATP-binding protein PF550_10945 IPR003593 AAA+ ATPase domain PF550_10950 IPR002347 Short-chain dehydrogenase/reductase SDR PF550_10950 IPR003560 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase PF550_10950 IPR036291 NAD(P)-binding domain superfamily PF550_10950 IPR020904 Short-chain dehydrogenase/reductase, conserved site PF550_10955 IPR036736 ACP-like superfamily PF550_10955 IPR016291 Isochorismatase PF550_10955 IPR000868 Isochorismatase-like PF550_10955 IPR036380 Isochorismatase-like superfamily PF550_10955 IPR009081 Phosphopantetheine binding ACP domain PF550_10965 IPR029052 Metallo-dependent phosphatase-like PF550_10965 IPR004843 Calcineurin-like phosphoesterase domain, ApaH type PF550_10965 IPR006179 5'-Nucleotidase/apyrase PF550_10970 IPR003414 Polyphosphate kinase PF550_10970 IPR036832 Polyphosphate kinase N-terminal domain superfamily PF550_10970 IPR041108 Polyphosphate kinase, C-terminal domain 1 PF550_10970 IPR024953 Polyphosphate kinase middle domain PF550_10970 IPR036830 Polyphosphate kinase middle domain superfamily PF550_10970 IPR025200 Polyphosphate kinase C-terminal domain 2 PF550_10970 IPR025198 Polyphosphate kinase N-terminal domain PF550_10975 IPR011725 Coenzyme PQQ biosynthesis protein A PF550_10980 IPR001279 Metallo-beta-lactamase PF550_10980 IPR011842 Coenzyme PQQ biosynthesis protein B PF550_10980 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like PF550_10985 IPR004305 Thiaminase-2/PQQC PF550_10985 IPR039068 Pyrroloquinoline-quinone synthase-like PF550_10985 IPR011845 Coenzyme PQQ biosynthesis protein C PF550_10985 IPR016084 Haem oxygenase-like, multi-helical PF550_10990 IPR008792 Coenzyme PQQ synthesis protein D PF550_10990 IPR022479 Coenzyme PQQ synthesis D, bacteria PF550_10990 IPR041881 Coenzyme PQQ synthesis protein D superfamily PF550_10995 IPR006638 Elp3/MiaB/NifB PF550_10995 IPR000385 MoaA/nifB/pqqE, iron-sulphur binding, conserved site PF550_10995 IPR017200 Coenzyme PQQ synthesis protein E PF550_10995 IPR007197 Radical SAM PF550_10995 IPR013785 Aldolase-type TIM barrel PF550_10995 IPR011843 Coenzyme PQQ biosynthesis protein E, bacteria PF550_10995 IPR023885 4Fe4S-binding SPASM domain PF550_11000 IPR008257 Peptidase M19 PF550_11000 IPR032466 Metal-dependent hydrolase PF550_11000 IPR000180 Membrane dipeptidase, active site PF550_11025 IPR009057 Homeobox-like domain superfamily PF550_11035 IPR004291 Transposase, IS66 PF550_11035 IPR039552 Transposase IS66, C-terminal PF550_11035 IPR024463 Transposase TnpC, homeodomain PF550_11035 IPR024474 Zinc-finger binding domain of transposase IS66 PF550_11055 IPR011614 Catalase core domain PF550_11055 IPR020835 Catalase superfamily PF550_11065 IPR020843 Polyketide synthase, enoylreductase domain PF550_11065 IPR036291 NAD(P)-binding domain superfamily PF550_11065 IPR011032 GroES-like superfamily PF550_11065 IPR002328 Alcohol dehydrogenase, zinc-type, conserved site PF550_11065 IPR013149 Alcohol dehydrogenase, C-terminal PF550_11065 IPR014183 Alcohol dehydrogenase class III PF550_11065 IPR013154 Alcohol dehydrogenase, N-terminal PF550_11075 IPR000259 Fimbrial-type adhesion domain PF550_11075 IPR036937 Fimbrial-type adhesion domain superfamily PF550_11075 IPR008966 Adhesion domain superfamily PF550_11080 IPR025885 PapC, N-terminal domain PF550_11080 IPR025949 PapC-like, C-terminal domain PF550_11080 IPR042186 Outer membrane usher protein FimD, plug domain PF550_11080 IPR018030 Fimbrial membrane usher, conserved site PF550_11080 IPR000015 Outer membrane usher protein PF550_11080 IPR037224 PapC, N-terminal domain superfamily PF550_11085 IPR016147 Pili assembly chaperone, N-terminal PF550_11085 IPR013783 Immunoglobulin-like fold PF550_11085 IPR018046 Pili assembly chaperone, conserved site PF550_11085 IPR008962 PapD-like superfamily PF550_11085 IPR036316 Pili assembly chaperone, C-terminal domain superfamily PF550_11085 IPR001829 Pili assembly chaperone, bacterial PF550_11085 IPR016148 Pili assembly chaperone, C-terminal PF550_11120 IPR014757 Transcription regulator IclR, C-terminal PF550_11120 IPR005471 Transcription regulator IclR, N-terminal PF550_11120 IPR036388 Winged helix-like DNA-binding domain superfamily PF550_11120 IPR036390 Winged helix DNA-binding domain superfamily PF550_11120 IPR029016 GAF-like domain superfamily PF550_11130 IPR000847 Transcription regulator HTH, LysR PF550_11130 IPR036390 Winged helix DNA-binding domain superfamily PF550_11130 IPR036388 Winged helix-like DNA-binding domain superfamily PF550_11130 IPR005119 LysR, substrate-binding PF550_11135 IPR024463 Transposase TnpC, homeodomain PF550_11135 IPR004291 Transposase, IS66 PF550_11135 IPR039552 Transposase IS66, C-terminal PF550_11135 IPR024474 Zinc-finger binding domain of transposase IS66 PF550_11145 IPR009057 Homeobox-like domain superfamily PF550_11150 IPR023614 Porin domain superfamily PF550_11150 IPR005318 Outer membrane porin, bacterial PF550_11155 IPR011701 Major facilitator superfamily PF550_11155 IPR020846 Major facilitator superfamily domain PF550_11155 IPR005828 Major facilitator, sugar transporter-like PF550_11155 IPR036259 MFS transporter superfamily PF550_11155 IPR005829 Sugar transporter, conserved site PF550_11155 IPR004736 MFS transporter, metabolite:H symporter PF550_11160 IPR002347 Short-chain dehydrogenase/reductase SDR PF550_11160 IPR020904 Short-chain dehydrogenase/reductase, conserved site PF550_11160 IPR036291 NAD(P)-binding domain superfamily PF550_11160 IPR011284 3-oxoacyl-(acyl-carrier-protein) reductase PF550_11190 IPR027417 P-loop containing nucleoside triphosphate hydrolase PF550_11190 IPR010285 DNA helicase Pif1-like PF550_11190 IPR003840 DNA helicase PF550_11190 IPR003593 AAA+ ATPase domain PF550_11210 IPR003607 HD/PDEase domain PF550_11210 IPR023023 dNTP triphosphohydrolase, type 2 PF550_11210 IPR006261 dNTP triphosphohydrolase PF550_11210 IPR026875 Phosphohydrolase-associated domain PF550_11210 IPR006674 HD domain PF550_11215 IPR004095 TGS PF550_11215 IPR007685 RelA/SpoT PF550_11215 IPR012676 TGS-like PF550_11215 IPR004811 RelA/SpoT family PF550_11215 IPR012675 Beta-grasp domain superfamily PF550_11215 IPR033655 RelA, TGS domain PF550_11215 IPR003607 HD/PDEase domain PF550_11215 IPR002912 ACT domain PF550_11225 IPR036523 SurE-like phosphatase/nucleotidase superfamily PF550_11225 IPR030048 Survival protein SurE PF550_11225 IPR002828 Survival protein SurE-like phosphatase/nucleotidase PF550_11250 IPR004638 Drug resistance transporter EmrB-like PF550_11250 IPR011701 Major facilitator superfamily PF550_11250 IPR020846 Major facilitator superfamily domain PF550_11250 IPR036259 MFS transporter superfamily PF550_11255 IPR039562 Membrane fusion protein, biotin-lipoyl like domain PF550_11280 IPR005946 Ribose-phosphate pyrophosphokinase PF550_11280 IPR037515 Ribose-phosphate pyrophosphokinase, bacterial-type PF550_11280 IPR000836 Phosphoribosyltransferase domain PF550_11280 IPR029099 Ribose-phosphate pyrophosphokinase, N-terminal domain PF550_11280 IPR000842 Phosphoribosyl pyrophosphate synthetase, conserved site PF550_11280 IPR029057 Phosphoribosyltransferase-like PF550_11300 IPR003593 AAA+ ATPase domain PF550_11300 IPR003439 ABC transporter-like PF550_11300 IPR017871 ABC transporter, conserved site PF550_11300 IPR027417 P-loop containing nucleoside triphosphate hydrolase PF550_11305 IPR037294 ABC transporter, BtuC-like PF550_11305 IPR000522 ABC transporter, permease protein, BtuC-like PF550_11315 IPR020843 Polyketide synthase, enoylreductase domain PF550_11315 IPR002328 Alcohol dehydrogenase, zinc-type, conserved site PF550_11315 IPR013154 Alcohol dehydrogenase, N-terminal PF550_11315 IPR036291 NAD(P)-binding domain superfamily PF550_11315 IPR013149 Alcohol dehydrogenase, C-terminal PF550_11315 IPR011032 GroES-like superfamily PF550_11330 IPR009594 Transcription regulator HTH, AraC, N-terminal PF550_11330 IPR009057 Homeobox-like domain superfamily PF550_11330 IPR018060 DNA binding HTH domain, AraC-type PF550_11335 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily PF550_11335 IPR013328 6-phosphogluconate dehydrogenase, domain 2 PF550_11335 IPR002204 3-hydroxyisobutyrate dehydrogenase-related, conserved site PF550_11335 IPR006398 2-hydroxy-3-oxopropionate reductase PF550_11335 IPR006115 6-phosphogluconate dehydrogenase, NADP-binding PF550_11335 IPR036291 NAD(P)-binding domain superfamily PF550_11335 IPR015815 3-hydroxyisobutyrate dehydrogenase-related PF550_11335 IPR029154 3-hydroxyisobutyrate dehydrogenase, NAD-binding domain PF550_11340 IPR011701 Major facilitator superfamily PF550_11340 IPR020846 Major facilitator superfamily domain PF550_11340 IPR036259 MFS transporter superfamily PF550_11345 IPR001509 NAD-dependent epimerase/dehydratase PF550_11345 IPR036291 NAD(P)-binding domain superfamily PF550_11350 IPR036390 Winged helix DNA-binding domain superfamily PF550_11350 IPR036388 Winged helix-like DNA-binding domain superfamily PF550_11350 IPR000847 Transcription regulator HTH, LysR PF550_11350 IPR005119 LysR, substrate-binding PF550_11360 IPR042096 Dihydroxy-acid dehydratase, C-terminal PF550_11360 IPR000581 Dihydroxy-acid/6-phosphogluconate dehydratase PF550_11360 IPR020558 Dihydroxy-acid/6-phosphogluconate dehydratase, conserved site PF550_11360 IPR037237 IlvD/EDD, N-terminal domain PF550_11365 IPR015590 Aldehyde dehydrogenase domain PF550_11365 IPR016162 Aldehyde dehydrogenase, N-terminal PF550_11365 IPR016163 Aldehyde dehydrogenase, C-terminal PF550_11365 IPR016161 Aldehyde/histidinol dehydrogenase PF550_11380 IPR032317 RND efflux pump, membrane fusion protein, barrel-sandwich domain PF550_11380 IPR005694 Efflux pump membrane protein PF550_11405 IPR000847 Transcription regulator HTH, LysR PF550_11405 IPR036388 Winged helix-like DNA-binding domain superfamily PF550_11405 IPR036390 Winged helix DNA-binding domain superfamily PF550_11405 IPR005119 LysR, substrate-binding PF550_11415 IPR011042 Six-bladed beta-propeller, TolB-like PF550_11415 IPR013658 SMP-30/Gluconolactonase/LRE-like region PF550_11415 IPR005511 Senescence marker protein-30 (SMP-30) PF550_11420 IPR011663 UbiC transcription regulator-associated PF550_11420 IPR036390 Winged helix DNA-binding domain superfamily PF550_11420 IPR036388 Winged helix-like DNA-binding domain superfamily PF550_11420 IPR000524 Transcription regulator HTH, GntR PF550_11420 IPR028978 Chorismate pyruvate-lyase/UbiC transcription regulator-associated domain superfamily PF550_11430 IPR006680 Amidohydrolase-related PF550_11430 IPR032466 Metal-dependent hydrolase PF550_11435 IPR036259 MFS transporter superfamily PF550_11435 IPR020846 Major facilitator superfamily domain PF550_11435 IPR011701 Major facilitator superfamily PF550_11455 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily PF550_11455 IPR005467 Histidine kinase domain PF550_11455 IPR036890 Histidine kinase/HSP90-like ATPase superfamily PF550_11455 IPR003594 Histidine kinase/HSP90-like ATPase PF550_11455 IPR029151 Periplasmic sensor-like domain superfamily PF550_11455 IPR004358 Signal transduction histidine kinase-related protein, C-terminal PF550_11455 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain PF550_11460 IPR018117 DNA methylase, C-5 cytosine-specific, active site PF550_11460 IPR031303 DNA methylase, C-5 cytosine-specific, conserved site PF550_11460 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase PF550_11460 IPR001525 C-5 cytosine methyltransferase PF550_11470 IPR036264 Bacterial exopeptidase dimerisation domain PF550_11470 IPR017439 Amidohydrolase PF550_11470 IPR011650 Peptidase M20, dimerisation domain PF550_11470 IPR002933 Peptidase M20 PF550_11480 IPR004771 K+/H+ exchanger PF550_11480 IPR038770 Sodium/solute symporter superfamily PF550_11480 IPR036291 NAD(P)-binding domain superfamily PF550_11480 IPR003148 Regulator of K+ conductance, N-terminal PF550_11480 IPR006153 Cation/H+ exchanger PF550_11485 IPR011041 Soluble quinoprotein glucose/sorbosone dehydrogenase PF550_11485 IPR019893 PQQ-dependent dehydrogenase, s-GDH family PF550_11485 IPR012938 Glucose/Sorbosone dehydrogenase PF550_11485 IPR011042 Six-bladed beta-propeller, TolB-like PF550_11490 IPR036388 Winged helix-like DNA-binding domain superfamily PF550_11490 IPR036390 Winged helix DNA-binding domain superfamily PF550_11490 IPR005119 LysR, substrate-binding PF550_11490 IPR000847 Transcription regulator HTH, LysR PF550_11495 IPR000868 Isochorismatase-like PF550_11495 IPR036380 Isochorismatase-like superfamily PF550_11505 IPR009057 Homeobox-like domain superfamily PF550_11505 IPR013570 Transcription regulator YsiA, C-terminal PF550_11505 IPR036271 Tetracyclin repressor-like, C-terminal domain superfamily PF550_11505 IPR001647 DNA-binding HTH domain, TetR-type PF550_11510 IPR024884 N-acyl-phosphatidylethanolamine-hydrolysing phospholipase D PF550_11510 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like PF550_11510 IPR001279 Metallo-beta-lactamase PF550_11520 IPR023753 FAD/NAD(P)-binding domain PF550_11520 IPR036188 FAD/NAD(P)-binding domain superfamily PF550_11530 IPR011789 Cu(I)-responsive transcriptional regulator PF550_11530 IPR009061 Putative DNA-binding domain superfamily PF550_11530 IPR015358 Transcription regulator MerR, DNA binding PF550_11530 IPR000551 MerR-type HTH domain PF550_11545 IPR013785 Aldolase-type TIM barrel PF550_11545 IPR036188 FAD/NAD(P)-binding domain superfamily PF550_11545 IPR001155 NADH:flavin oxidoreductase/NADH oxidase, N-terminal PF550_11545 IPR023753 FAD/NAD(P)-binding domain PF550_11550 IPR029058 Alpha/Beta hydrolase fold PF550_11550 IPR000073 Alpha/beta hydrolase fold-1 PF550_11550 IPR000639 Epoxide hydrolase-like PF550_11560 IPR016163 Aldehyde dehydrogenase, C-terminal PF550_11560 IPR016162 Aldehyde dehydrogenase, N-terminal PF550_11560 IPR015590 Aldehyde dehydrogenase domain PF550_11560 IPR016161 Aldehyde/histidinol dehydrogenase PF550_11570 IPR036259 MFS transporter superfamily PF550_11570 IPR011701 Major facilitator superfamily PF550_11570 IPR020846 Major facilitator superfamily domain PF550_11575 IPR042096 Dihydroxy-acid dehydratase, C-terminal PF550_11575 IPR020558 Dihydroxy-acid/6-phosphogluconate dehydratase, conserved site PF550_11575 IPR037237 IlvD/EDD, N-terminal domain PF550_11575 IPR000581 Dihydroxy-acid/6-phosphogluconate dehydratase PF550_11580 IPR000524 Transcription regulator HTH, GntR PF550_11580 IPR036388 Winged helix-like DNA-binding domain superfamily PF550_11580 IPR036390 Winged helix DNA-binding domain superfamily PF550_11580 IPR008920 Transcription regulator FadR/GntR, C-terminal PF550_11580 IPR011711 GntR, C-terminal PF550_11590 IPR036388 Winged helix-like DNA-binding domain superfamily PF550_11590 IPR036390 Winged helix DNA-binding domain superfamily PF550_11590 IPR005119 LysR, substrate-binding PF550_11590 IPR000847 Transcription regulator HTH, LysR PF550_11595 IPR018110 Mandelate racemase/muconate lactonizing enzyme, conserved site PF550_11595 IPR029065 Enolase C-terminal domain-like PF550_11595 IPR029017 Enolase-like, N-terminal PF550_11595 IPR036849 Enolase-like, C-terminal domain superfamily PF550_11595 IPR013370 Muconate/chloromuconate cycloisomerase PF550_11595 IPR013341 Mandelate racemase/muconate lactonizing enzyme, N-terminal domain PF550_11595 IPR013342 Mandelate racemase/muconate lactonizing enzyme, C-terminal PF550_11600 IPR003464 Muconolactone delta-isomerase PF550_11600 IPR026029 Muconolactone isomerase domain PF550_11600 IPR011008 Dimeric alpha-beta barrel PF550_11605 IPR007535 Catechol dioxygenase, N-terminal PF550_11605 IPR000627 Intradiol ring-cleavage dioxygenase, C-terminal PF550_11605 IPR015889 Intradiol ring-cleavage dioxygenase, core PF550_11605 IPR012801 Catechol 1,2-dioxygenase, proteobacteria PF550_11610 IPR012792 3-oxoacid CoA-transferase, subunit A PF550_11610 IPR004165 Coenzyme A transferase family I PF550_11610 IPR037171 NagB/RpiA transferase-like PF550_11610 IPR004163 Coenzyme A transferase binding site PF550_11615 IPR004164 Coenzyme A transferase active site PF550_11615 IPR037171 NagB/RpiA transferase-like PF550_11615 IPR012791 3-oxoacid CoA-transferase, subunit B PF550_11615 IPR004165 Coenzyme A transferase family I PF550_11620 IPR020616 Thiolase, N-terminal PF550_11620 IPR020613 Thiolase, conserved site PF550_11620 IPR020617 Thiolase, C-terminal PF550_11620 IPR020610 Thiolase, active site PF550_11620 IPR016039 Thiolase-like PF550_11620 IPR002155 Thiolase PF550_11620 IPR020615 Thiolase, acyl-enzyme intermediate active site PF550_11620 IPR012793 Beta-ketoadipyl CoA thiolase PF550_11625 IPR026968 3-oxoadipate enol-lactonase 1/2 PF550_11625 IPR022742 Serine aminopeptidase, S33 PF550_11625 IPR000073 Alpha/beta hydrolase fold-1 PF550_11625 IPR029058 Alpha/Beta hydrolase fold PF550_11630 IPR002692 Penicillin/GL-7-ACA/AHL/aculeacin-A acylase PF550_11630 IPR014395 Penicillin/GL-7-ACA/AHL acylase PF550_11630 IPR033813 Penicillin G acylase, C-terminal PF550_11630 IPR029055 Nucleophile aminohydrolases, N-terminal PF550_11630 IPR023343 Penicillin amidase type, domain 1 PF550_11635 IPR015590 Aldehyde dehydrogenase domain PF550_11635 IPR016162 Aldehyde dehydrogenase, N-terminal PF550_11635 IPR029510 Aldehyde dehydrogenase, glutamic acid active site PF550_11635 IPR016160 Aldehyde dehydrogenase, cysteine active site PF550_11635 IPR016163 Aldehyde dehydrogenase, C-terminal PF550_11635 IPR016161 Aldehyde/histidinol dehydrogenase PF550_11645 IPR036582 Copper amine oxidase-like, N-terminal domain superfamily PF550_11645 IPR000269 Copper amine oxidase PF550_11645 IPR012854 Copper amine oxidase-like, N-terminal PF550_11645 IPR015798 Copper amine oxidase, catalytic domain PF550_11645 IPR036460 Copper amine oxidase, catalytic domain superfamily PF550_11645 IPR016182 Copper amine oxidase, N-terminal PF550_11645 IPR015800 Copper amine oxidase, N2-terminal PF550_11645 IPR015802 Copper amine oxidase, N3-terminal PF550_11650 IPR023609 Transcription regulator HTH, RhaS PF550_11650 IPR003313 AraC-type arabinose-binding/dimerisation domain PF550_11650 IPR020449 Transcription regulator HTH, AraC- type PF550_11650 IPR014710 RmlC-like jelly roll fold PF550_11650 IPR018060 DNA binding HTH domain, AraC-type PF550_11650 IPR009057 Homeobox-like domain superfamily PF550_11650 IPR037923 Transcription regulator HTH-like PF550_11655 IPR012349 FMN-binding split barrel PF550_11655 IPR002563 Flavin reductase like domain PF550_11655 IPR036390 Winged helix DNA-binding domain superfamily PF550_11655 IPR036388 Winged helix-like DNA-binding domain superfamily PF550_11660 IPR039261 Ferredoxin-NADP reductase (FNR), nucleotide-binding domain PF550_11660 IPR017927 FAD-binding domain, ferredoxin reductase-type PF550_11660 IPR036010 2Fe-2S ferredoxin-like superfamily PF550_11660 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain PF550_11660 IPR006058 2Fe-2S ferredoxin, iron-sulphur binding site PF550_11660 IPR012675 Beta-grasp domain superfamily PF550_11660 IPR017938 Riboflavin synthase-like beta-barrel PF550_11660 IPR000951 Phthalate dioxygenase reductase PF550_11660 IPR001433 Oxidoreductase FAD/NAD(P)-binding PF550_11665 IPR036291 NAD(P)-binding domain superfamily PF550_11665 IPR011284 3-oxoacyl-(acyl-carrier-protein) reductase PF550_11665 IPR020904 Short-chain dehydrogenase/reductase, conserved site PF550_11665 IPR002347 Short-chain dehydrogenase/reductase SDR PF550_11675 IPR015879 Aromatic-ring-hydroxylating dioxygenase, alpha subunit, C-terminal domain PF550_11675 IPR001663 Aromatic-ring-hydroxylating dioxygenase, alpha subunit PF550_11675 IPR036922 Rieske [2Fe-2S] iron-sulphur domain superfamily PF550_11675 IPR017639 Benzoate 1,2-dioxygenase, large subunit PF550_11675 IPR015881 Aromatic-ring-hydroxylating dioxygenase, 2Fe-2S-binding site PF550_11675 IPR017941 Rieske [2Fe-2S] iron-sulphur domain PF550_11690 IPR037069 Acyl-CoA dehydrogenase/oxidase, N-terminal domain superfamily PF550_11690 IPR036250 Acyl-CoA dehydrogenase-like, C-terminal PF550_11690 IPR013107 Acyl-CoA dehydrogenase, C-terminal domain PF550_11690 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily PF550_11695 IPR023631 Amidase signature domain PF550_11695 IPR004412 Glutamyl-tRNA(Gln) amidotransferase A subunit PF550_11695 IPR036928 Amidase signature (AS) superfamily PF550_11695 IPR020556 Amidase, conserved site PF550_11695 IPR000120 Amidase PF550_11705 IPR011701 Major facilitator superfamily PF550_11705 IPR036259 MFS transporter superfamily PF550_11705 IPR020846 Major facilitator superfamily domain PF550_11715 IPR036291 NAD(P)-binding domain superfamily PF550_11715 IPR020904 Short-chain dehydrogenase/reductase, conserved site PF550_11715 IPR002347 Short-chain dehydrogenase/reductase SDR PF550_11730 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal PF550_11730 IPR006089 Acyl-CoA dehydrogenase, conserved site PF550_11730 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal PF550_11730 IPR036250 Acyl-CoA dehydrogenase-like, C-terminal PF550_11730 IPR006091 Acyl-CoA oxidase/dehydrogenase, central domain PF550_11730 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily PF550_11730 IPR037069 Acyl-CoA dehydrogenase/oxidase, N-terminal domain superfamily PF550_11735 IPR005119 LysR, substrate-binding PF550_11735 IPR037416 Nodulation protein D, PBP2 PF550_11735 IPR000847 Transcription regulator HTH, LysR PF550_11735 IPR036388 Winged helix-like DNA-binding domain superfamily PF550_11735 IPR036390 Winged helix DNA-binding domain superfamily PF550_11740 IPR036388 Winged helix-like DNA-binding domain superfamily PF550_11740 IPR036390 Winged helix DNA-binding domain superfamily PF550_11740 IPR012794 Beta-ketoadipate transcriptional regulator, PcaR/PcaU/PobR PF550_11740 IPR029016 GAF-like domain superfamily PF550_11740 IPR014757 Transcription regulator IclR, C-terminal PF550_11740 IPR005471 Transcription regulator IclR, N-terminal PF550_11745 IPR001279 Metallo-beta-lactamase PF550_11745 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like PF550_11755 IPR007272 Sulphur transport domain PF550_11765 IPR017511 PQQ-dependent membrane bound dehydrogenase PF550_11765 IPR018391 Pyrrolo-quinoline quinone beta-propeller repeat PF550_11765 IPR002372 Pyrrolo-quinoline quinone repeat PF550_11765 IPR011047 Quinoprotein alcohol dehydrogenase-like superfamily PF550_11765 IPR001479 Quinoprotein dehydrogenase, conserved site PF550_11770 IPR038673 Carbohydrate-selective porin OprB superfamily PF550_11770 IPR007049 Carbohydrate-selective porin OprB PF550_11775 IPR012334 Pectin lyase fold PF550_11775 IPR006626 Parallel beta-helix repeat PF550_11775 IPR011050 Pectin lyase fold/virulence factor PF550_11775 IPR007742 Periplasmic copper-binding protein NosD, beta helix domain PF550_11780 IPR018508 3-dehydroquinate dehydratase, active site PF550_11780 IPR013785 Aldolase-type TIM barrel PF550_11780 IPR001381 3-dehydroquinate dehydratase type I PF550_11785 IPR012786 Protocatechuate 3,4-dioxygenase, alpha subunit PF550_11785 IPR015889 Intradiol ring-cleavage dioxygenase, core PF550_11785 IPR000627 Intradiol ring-cleavage dioxygenase, C-terminal PF550_11790 IPR015889 Intradiol ring-cleavage dioxygenase, core PF550_11790 IPR024756 Protocatechuate 3,4-dioxygenase beta subunit, N-terminal PF550_11790 IPR012785 Protocatechuate 3,4-dioxygenase, beta subunit PF550_11790 IPR000627 Intradiol ring-cleavage dioxygenase, C-terminal PF550_11795 IPR003779 Carboxymuconolactone decarboxylase-like PF550_11795 IPR029032 AhpD-like PF550_11795 IPR012788 4-carboxymuconolactone decarboxylase PF550_11800 IPR011701 Major facilitator superfamily PF550_11800 IPR004746 Major facilitator superfamily, aromatic acid:H+ symporter family PF550_11800 IPR020846 Major facilitator superfamily domain PF550_11800 IPR036259 MFS transporter superfamily PF550_11800 IPR005829 Sugar transporter, conserved site PF550_11805 IPR000073 Alpha/beta hydrolase fold-1 PF550_11805 IPR029058 Alpha/Beta hydrolase fold PF550_11805 IPR026968 3-oxoadipate enol-lactonase 1/2 PF550_11810 IPR012789 3-carboxy-cis,cis-muconate cycloisomerase PF550_11810 IPR008948 L-Aspartase-like PF550_11810 IPR019468 Adenylosuccinate lyase C-terminal PF550_11810 IPR000362 Fumarate lyase family PF550_11810 IPR020557 Fumarate lyase, conserved site PF550_11810 IPR024083 Fumarase/histidase, N-terminal PF550_11810 IPR022761 Fumarate lyase, N-terminal PF550_11815 IPR012793 Beta-ketoadipyl CoA thiolase PF550_11815 IPR002155 Thiolase PF550_11815 IPR016039 Thiolase-like PF550_11815 IPR020610 Thiolase, active site PF550_11815 IPR020617 Thiolase, C-terminal PF550_11815 IPR020615 Thiolase, acyl-enzyme intermediate active site PF550_11815 IPR020613 Thiolase, conserved site PF550_11815 IPR020616 Thiolase, N-terminal PF550_11820 IPR012791 3-oxoacid CoA-transferase, subunit B PF550_11820 IPR004165 Coenzyme A transferase family I PF550_11820 IPR004164 Coenzyme A transferase active site PF550_11820 IPR037171 NagB/RpiA transferase-like PF550_11825 IPR004165 Coenzyme A transferase family I PF550_11825 IPR004163 Coenzyme A transferase binding site PF550_11825 IPR037171 NagB/RpiA transferase-like PF550_11825 IPR012792 3-oxoacid CoA-transferase, subunit A PF550_11830 IPR029044 Nucleotide-diphospho-sugar transferases PF550_11830 IPR018294 4-diphosphocytidyl-2C-methyl-D-erythritol synthase, conserved site PF550_11830 IPR034683 Cytidylyltransferase IspD/TarI PF550_11830 IPR001228 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase PF550_11835 IPR007060 Septum formation initiator FtsL/DivIC PF550_11835 IPR023081 Cell division protein FtsB PF550_11840 IPR023090 UPF0702, alpha/beta domain superfamily PF550_11840 IPR007353 Protein of unknown function DUF421 PF550_11845 IPR020809 Enolase, conserved site PF550_11845 IPR029017 Enolase-like, N-terminal PF550_11845 IPR036849 Enolase-like, C-terminal domain superfamily PF550_11845 IPR000941 Enolase PF550_11845 IPR020811 Enolase, N-terminal PF550_11845 IPR020810 Enolase, C-terminal TIM barrel domain PF550_11850 IPR006269 3-deoxy-8-phosphooctulonate synthase PF550_11850 IPR013785 Aldolase-type TIM barrel PF550_11850 IPR006218 DAHP synthetase I/KDSA PF550_11855 IPR029062 Class I glutamine amidotransferase-like PF550_11855 IPR027417 P-loop containing nucleoside triphosphate hydrolase PF550_11855 IPR033828 CTP synthase GATase domain PF550_11855 IPR017926 Glutamine amidotransferase PF550_11855 IPR017456 CTP synthase, N-terminal PF550_11855 IPR004468 CTP synthase PF550_11885 IPR001155 NADH:flavin oxidoreductase/NADH oxidase, N-terminal PF550_11885 IPR013785 Aldolase-type TIM barrel PF550_11885 IPR036188 FAD/NAD(P)-binding domain superfamily PF550_11885 IPR023753 FAD/NAD(P)-binding domain PF550_11900 IPR006219 DHAP synthase, class 1 PF550_11900 IPR006218 DAHP synthetase I/KDSA PF550_11900 IPR013785 Aldolase-type TIM barrel PF550_11905 IPR003844 Uncharacterised protein family UPF0060 PF550_11910 IPR041546 ClpA/ClpB, AAA lid domain PF550_11910 IPR019489 Clp ATPase, C-terminal PF550_11910 IPR018368 ClpA/B, conserved site 1 PF550_11910 IPR001270 ClpA/B family PF550_11910 IPR013461 ATP-dependent Clp protease ATP-binding subunit ClpA PF550_11910 IPR036628 Clp, N-terminal domain superfamily PF550_11910 IPR003593 AAA+ ATPase domain PF550_11910 IPR003959 ATPase, AAA-type, core PF550_11910 IPR028299 ClpA/B, conserved site 2 PF550_11910 IPR004176 Clp, N-terminal PF550_11910 IPR027417 P-loop containing nucleoside triphosphate hydrolase PF550_11915 IPR003769 Adaptor protein ClpS, core PF550_11915 IPR014719 Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-like PF550_11915 IPR022935 ATP-dependent Clp protease adaptor protein ClpS PF550_11925 IPR023013 N-acetyl-gamma-glutamyl-phosphate reductase, active site PF550_11925 IPR000706 N-acetyl-gamma-glutamyl-phosphate reductase, type 1 PF550_11925 IPR036291 NAD(P)-binding domain superfamily PF550_11925 IPR000534 Semialdehyde dehydrogenase, NAD-binding PF550_11925 IPR012280 Semialdehyde dehydrogenase, dimerisation domain PF550_11940 IPR037171 NagB/RpiA transferase-like PF550_11940 IPR020672 Ribose-5-phosphate isomerase, type A, subgroup PF550_11940 IPR004788 Ribose 5-phosphate isomerase, type A PF550_11945 IPR036052 Tryptophan synthase beta subunit-like PLP-dependent enzyme PF550_11945 IPR005787 Threonine dehydratase, biosynthetic PF550_11945 IPR000634 Serine/threonine dehydratase, pyridoxal-phosphate-binding site PF550_11945 IPR001721 Threonine dehydratase, ACT-like domain PF550_11945 IPR001926 Pyridoxal-phosphate dependent enzyme PF550_11945 IPR038110 Threonine dehydratase, ACT-like domain superfamily PF550_11950 IPR036721 Regulator of K+ conductance, C-terminal domain superfamily PF550_11950 IPR006037 Regulator of K+ conductance, C-terminal PF550_11950 IPR036291 NAD(P)-binding domain superfamily PF550_11950 IPR003148 Regulator of K+ conductance, N-terminal PF550_11955 IPR004772 TrkH potassium transport family PF550_11955 IPR003445 Cation transporter PF550_11960 IPR036541 Phospholipase A1 superfamily PF550_11960 IPR003187 Phospholipase A1 PF550_11965 IPR013578 Peptidase M16C associated PF550_11965 IPR011249 Metalloenzyme, LuxS/M16 peptidase-like PF550_11965 IPR007863 Peptidase M16, C-terminal PF550_11965 IPR011765 Peptidase M16, N-terminal PF550_11970 IPR010105 TonB-dependent siderophore receptor PF550_11970 IPR000531 TonB-dependent receptor-like, beta-barrel PF550_11970 IPR036942 TonB-dependent receptor-like, beta-barrel domain superfamily PF550_11970 IPR039423 TonB-dependent receptor-like PF550_11970 IPR037066 TonB-dependent receptor, plug domain superfamily PF550_11970 IPR012910 TonB-dependent receptor, plug domain PF550_11970 IPR010917 TonB-dependent receptor, conserved site PF550_11975 IPR002173 Carbohydrate/puine kinase, PfkB, conserved site PF550_11975 IPR029056 Ribokinase-like PF550_11975 IPR011611 Carbohydrate kinase PfkB PF550_11985 IPR010840 Protein of unknown function DUF1449 PF550_11990 IPR009057 Homeobox-like domain superfamily PF550_12000 IPR004291 Transposase, IS66 PF550_12000 IPR024463 Transposase TnpC, homeodomain PF550_12000 IPR039552 Transposase IS66, C-terminal PF550_12000 IPR024474 Zinc-finger binding domain of transposase IS66 PF550_12010 IPR002585 Cytochrome ubiquinol oxidase subunit 1 PF550_12015 IPR003317 Cytochrome ubiquinol oxidase subunit 2 PF550_12020 IPR011724 Cyd operon protein YbgT PF550_12020 IPR012994 Membrane bound YbgT-like PF550_12030 IPR018635 Uncharacterised protein family UPF0319 PF550_12040 IPR042101 Signal recognition particle SRP54, N-terminal domain superfamily PF550_12040 IPR000897 Signal recognition particle, SRP54 subunit, GTPase domain PF550_12040 IPR036225 SRP/SRP receptor, N-terminal PF550_12040 IPR004390 Signal-recognition particle receptor FtsY PF550_12040 IPR003593 AAA+ ATPase domain PF550_12040 IPR027417 P-loop containing nucleoside triphosphate hydrolase PF550_12040 IPR013822 Signal recognition particle SRP54, helical bundle PF550_12065 IPR005990 Inosine-5'-monophosphate dehydrogenase PF550_12065 IPR000644 CBS domain PF550_12065 IPR001093 IMP dehydrogenase/GMP reductase PF550_12065 IPR015875 IMP dehydrogenase / GMP reductase, conserved site PF550_12065 IPR013785 Aldolase-type TIM barrel PF550_12070 IPR004636 Acetylornithine/Succinylornithine transaminase family PF550_12070 IPR005814 Aminotransferase class-III PF550_12070 IPR015424 Pyridoxal phosphate-dependent transferase PF550_12070 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 PF550_12070 IPR015421 Pyridoxal phosphate-dependent transferase, major domain PF550_12075 IPR036249 Thioredoxin-like superfamily PF550_12075 IPR033658 Glutaredoxin, PICOT-like PF550_12075 IPR002109 Glutaredoxin PF550_12075 IPR004480 Monothiol glutaredoxin-related PF550_12075 IPR014434 Monothiol glutaredoxin PF550_12085 IPR036390 Winged helix DNA-binding domain superfamily PF550_12085 IPR036388 Winged helix-like DNA-binding domain superfamily PF550_12085 IPR000847 Transcription regulator HTH, LysR PF550_12085 IPR005119 LysR, substrate-binding PF550_12090 IPR002467 Peptidase M24A, methionine aminopeptidase, subfamily 1 PF550_12090 IPR000994 Peptidase M24 PF550_12090 IPR036005 Creatinase/aminopeptidase-like PF550_12090 IPR001714 Peptidase M24, methionine aminopeptidase PF550_12095 IPR004685 Branched-chain amino acid transport system II carrier protein PF550_12120 IPR040442 Pyruvate kinase-like domain superfamily PF550_12120 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain superfamily PF550_12120 IPR036618 PtsI, HPr-binding domain superfamily PF550_12120 IPR035895 HPr-like superfamily PF550_12120 IPR002178 PTS EIIA type-2 domain PF550_12120 IPR008279 PEP-utilising enzyme, mobile domain PF550_12120 IPR018274 PEP-utilising enzyme, active site PF550_12120 IPR000121 PEP-utilising enzyme, C-terminal PF550_12120 IPR023151 PEP-utilising enzyme, conserved site PF550_12120 IPR036637 Phosphohistidine domain superfamily PF550_12120 IPR016152 Phosphotransferase/anion transporter PF550_12120 IPR000032 Phosphocarrier protein HPr-like PF550_12120 IPR001020 Phosphotransferase system, HPr histidine phosphorylation site PF550_12120 IPR008731 Phosphotransferase system, enzyme I N-terminal PF550_12120 IPR002114 Phosphotransferase system, HPr serine phosphorylation site PF550_12120 IPR006318 Phosphotransferase system, enzyme I-like PF550_12125 IPR002173 Carbohydrate/puine kinase, PfkB, conserved site PF550_12125 IPR017583 Tagatose/fructose phosphokinase PF550_12125 IPR029056 Ribokinase-like PF550_12125 IPR022463 Fructose 1-phosphate kinase PF550_12125 IPR011611 Carbohydrate kinase PfkB PF550_12130 IPR003352 Phosphotransferase system, EIIC PF550_12130 IPR013014 Phosphotransferase system, EIIC component, type 2 PF550_12130 IPR003353 Phosphotransferase system, fructose-specific IIB subunit PF550_12130 IPR006327 Phosphotransferase system, fructose IIC component PF550_12130 IPR036095 PTS system IIB component-like superfamily PF550_12130 IPR013011 Phosphotransferase system, EIIB component, type 2 PF550_12130 IPR003501 Phosphotransferase system, EIIB component, type 2/3 PF550_12145 IPR035965 PAS domain superfamily PF550_12145 IPR029787 Nucleotide cyclase PF550_12145 IPR005330 MHYT domain PF550_12145 IPR035919 EAL domain superfamily PF550_12145 IPR001633 EAL domain PF550_12145 IPR000160 GGDEF domain PF550_12155 IPR024463 Transposase TnpC, homeodomain PF550_12155 IPR024474 Zinc-finger binding domain of transposase IS66 PF550_12155 IPR039552 Transposase IS66, C-terminal PF550_12155 IPR004291 Transposase, IS66 PF550_12165 IPR009057 Homeobox-like domain superfamily PF550_12175 IPR019893 PQQ-dependent dehydrogenase, s-GDH family PF550_12175 IPR012938 Glucose/Sorbosone dehydrogenase PF550_12175 IPR011042 Six-bladed beta-propeller, TolB-like PF550_12175 IPR011041 Soluble quinoprotein glucose/sorbosone dehydrogenase PF550_12180 IPR003738 SOS response associated peptidase (SRAP) PF550_12180 IPR036590 SOS response associated peptidase-like PF550_12185 IPR018045 Sulphate anion transporter, conserved site PF550_12185 IPR011547 SLC26A/SulP transporter domain PF550_12185 IPR001902 SLC26A/SulP transporter PF550_12185 IPR002645 STAS domain PF550_12185 IPR036513 STAS domain superfamily PF550_12190 IPR009057 Homeobox-like domain superfamily PF550_12200 IPR039552 Transposase IS66, C-terminal PF550_12200 IPR004291 Transposase, IS66 PF550_12200 IPR024463 Transposase TnpC, homeodomain PF550_12200 IPR024474 Zinc-finger binding domain of transposase IS66 PF550_12210 IPR037045 Peptidase S8 propeptide/proteinase inhibitor I9 superfamily PF550_12210 IPR010259 Peptidase S8 propeptide/proteinase inhibitor I9 PF550_12210 IPR022398 Peptidase S8, subtilisin, His-active site PF550_12210 IPR023828 Peptidase S8, subtilisin, Ser-active site PF550_12210 IPR034193 Proteinase K-like catalytic domain PF550_12210 IPR000209 Peptidase S8/S53 domain PF550_12210 IPR036852 Peptidase S8/S53 domain superfamily PF550_12210 IPR015500 Peptidase S8, subtilisin-related PF550_12210 IPR023827 Peptidase S8, subtilisin, Asp-active site PF550_12225 IPR004841 Amino acid permease/ SLC12A domain PF550_12225 IPR004840 Amino acid permease, conserved site PF550_12230 IPR000192 Aminotransferase class V domain PF550_12230 IPR010111 Kynureninase PF550_12230 IPR015424 Pyridoxal phosphate-dependent transferase PF550_12230 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 PF550_12230 IPR015421 Pyridoxal phosphate-dependent transferase, major domain PF550_12235 IPR019885 Transcription regulator HTH, AsnC-type, conserved site PF550_12235 IPR011008 Dimeric alpha-beta barrel PF550_12235 IPR019887 Transcription regulator AsnC/Lrp, ligand binding domain PF550_12235 IPR019888 Transcription regulator AsnC-type PF550_12235 IPR000485 AsnC-type HTH domain PF550_12235 IPR011991 ArsR-like helix-turn-helix domain PF550_12235 IPR036388 Winged helix-like DNA-binding domain superfamily PF550_12235 IPR036390 Winged helix DNA-binding domain superfamily PF550_12260 IPR036412 HAD-like superfamily PF550_12260 IPR041492 Haloacid dehalogenase-like hydrolase PF550_12260 IPR006439 HAD hydrolase, subfamily IA PF550_12260 IPR023214 HAD superfamily PF550_12265 IPR002942 RNA-binding S4 domain PF550_12265 IPR036986 RNA-binding S4 domain superfamily PF550_12265 IPR025708 Heat shock protein 15 PF550_12270 IPR003593 AAA+ ATPase domain PF550_12270 IPR013765 DNA recombination and repair protein RecA PF550_12270 IPR020584 DNA recombination/repair protein RecA, conserved site PF550_12270 IPR027417 P-loop containing nucleoside triphosphate hydrolase PF550_12270 IPR020588 DNA recombination and repair protein RecA-like, ATP-binding domain PF550_12270 IPR023400 DNA recombination and repair protein RecA, C-terminal PF550_12270 IPR020587 DNA recombination and repair protein RecA, monomer-monomer interface PF550_12275 IPR003783 Regulatory protein RecX PF550_12275 IPR036388 Winged helix-like DNA-binding domain superfamily PF550_12290 IPR010137 Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase PF550_12290 IPR011004 Trimeric LpxA-like superfamily PF550_12290 IPR018357 Hexapeptide transferase, conserved site PF550_12290 IPR001451 Hexapeptide repeat PF550_12290 IPR037157 UDP-N-acetylglucosamine O-acyltransferase, C-terminal domain superfamily PF550_12290 IPR029098 UDP N-acetylglucosamine O-acyltransferase, C-terminal PF550_12295 IPR013114 Beta-hydroxydecanoyl thiol ester dehydrase, FabA/FabZ PF550_12295 IPR010084 Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabZ PF550_12295 IPR029069 HotDog domain superfamily PF550_12300 IPR001451 Hexapeptide repeat PF550_12300 IPR007691 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase LpxD PF550_12300 IPR011004 Trimeric LpxA-like superfamily PF550_12300 IPR020573 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, non-repeat region PF550_12310 IPR000184 Bacterial surface antigen (D15) PF550_12310 IPR010827 POTRA domain, BamA/TamA-like PF550_12310 IPR039910 Surface antigen D15-like PF550_12310 IPR023707 Outer membrane protein assembly factor BamA PF550_12310 IPR034746 POTRA domain PF550_12315 IPR041489 PDZ domain 6 PF550_12315 IPR008915 Peptidase M50 PF550_12315 IPR036034 PDZ superfamily PF550_12315 IPR001478 PDZ domain PF550_12315 IPR004387 Peptidase M50, putative membrane-associated zinc metallopeptidase PF550_12320 IPR036291 NAD(P)-binding domain superfamily PF550_12320 IPR003821 1-deoxy-D-xylulose 5-phosphate reductoisomerase PF550_12320 IPR013644 1-deoxy-D-xylulose 5-phosphate reductoisomerase, C-terminal PF550_12320 IPR013512 1-deoxy-D-xylulose 5-phosphate reductoisomerase, N-terminal PF550_12320 IPR026877 DXP reductoisomerase C-terminal domain PF550_12320 IPR036169 DXP reductoisomerase, C-terminal domain superfamily PF550_12325 IPR000374 Phosphatidate cytidylyltransferase PF550_12330 IPR001441 Decaprenyl diphosphate synthase-like PF550_12330 IPR018520 Di-trans-poly-cis-decaprenylcistransferase-like, conserved site PF550_12330 IPR036424 Decaprenyl diphosphate synthase-like superfamily PF550_12335 IPR036191 RRF superfamily PF550_12335 IPR023584 Ribosome recycling factor domain PF550_12335 IPR002661 Ribosome recycling factor PF550_12340 IPR036393 Acetylglutamate kinase-like superfamily PF550_12340 IPR001048 Aspartate/glutamate/uridylate kinase PF550_12340 IPR015963 Uridylate kinase, bacteria PF550_12340 IPR011817 Uridylate kinase PF550_12345 IPR007197 Radical SAM PF550_12345 IPR006638 Elp3/MiaB/NifB PF550_12345 IPR013848 Methylthiotransferase, N-terminal PF550_12345 IPR038135 Methylthiotransferase, N-terminal domain superfamily PF550_12345 IPR005840 Ribosomal protein S12 methylthiotransferase RimO PF550_12345 IPR041582 RimO, TRAM domain PF550_12345 IPR023404 Radical SAM, alpha/beta horseshoe PF550_12345 IPR005839 Methylthiotransferase PF550_12345 IPR020612 Methylthiotransferase, conserved site PF550_12345 IPR002792 TRAM domain PF550_12355 IPR003594 Histidine kinase/HSP90-like ATPase PF550_12355 IPR036890 Histidine kinase/HSP90-like ATPase superfamily PF550_12355 IPR005467 Histidine kinase domain PF550_12355 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain PF550_12355 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily PF550_12355 IPR035965 PAS domain superfamily PF550_12355 IPR013767 PAS fold PF550_12355 IPR004358 Signal transduction histidine kinase-related protein, C-terminal PF550_12355 IPR000014 PAS domain PF550_12360 IPR025662 Sigma-54 interaction domain, ATP-binding site 1 PF550_12360 IPR001789 Signal transduction response regulator, receiver domain PF550_12360 IPR010114 DNA-binding transcriptional regulator NtrC PF550_12360 IPR025944 Sigma-54 interaction domain, conserved site PF550_12360 IPR003593 AAA+ ATPase domain PF550_12360 IPR011006 CheY-like superfamily PF550_12360 IPR009057 Homeobox-like domain superfamily PF550_12360 IPR002197 DNA binding HTH domain, Fis-type PF550_12360 IPR027417 P-loop containing nucleoside triphosphate hydrolase PF550_12360 IPR025943 Sigma-54 interaction domain, ATP-binding site 2 PF550_12360 IPR002078 RNA polymerase sigma factor 54 interaction domain PF550_12380 IPR024904 Ornithine carbamoyltransferase PF550_12380 IPR002292 Ornithine/putrescine carbamoyltransferase PF550_12380 IPR006131 Aspartate/ornithine carbamoyltransferase, Asp/Orn-binding domain PF550_12380 IPR006130 Aspartate/ornithine carbamoyltransferase PF550_12380 IPR006132 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding PF550_12380 IPR036901 Aspartate/ornithine carbamoyltransferase superfamily PF550_12390 IPR020555 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, conserved site PF550_12390 IPR003526 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase PF550_12390 IPR036571 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase superfamily PF550_12400 IPR036188 FAD/NAD(P)-binding domain superfamily PF550_12400 IPR023080 D-amino acid dehydrogenase DadA PF550_12400 IPR006076 FAD dependent oxidoreductase PF550_12425 IPR005677 Fumarate hydratase, class II PF550_12425 IPR024083 Fumarase/histidase, N-terminal PF550_12425 IPR018951 Fumarase C, C-terminal PF550_12425 IPR020557 Fumarate lyase, conserved site PF550_12425 IPR000362 Fumarate lyase family PF550_12425 IPR022761 Fumarate lyase, N-terminal PF550_12425 IPR008948 L-Aspartase-like PF550_12430 IPR005886 UDP-glucose 4-epimerase PF550_12430 IPR036291 NAD(P)-binding domain superfamily PF550_12430 IPR016040 NAD(P)-binding domain PF550_12435 IPR017463 Sulphur relay, TusD/DsrE PF550_12435 IPR003787 Sulphur relay, DsrE/F-like protein PF550_12435 IPR027396 DsrEFH-like PF550_12455 IPR000620 EamA domain PF550_12460 IPR004839 Aminotransferase, class I/classII PF550_12460 IPR015424 Pyridoxal phosphate-dependent transferase PF550_12460 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 PF550_12460 IPR015421 Pyridoxal phosphate-dependent transferase, major domain PF550_12460 IPR000524 Transcription regulator HTH, GntR PF550_12460 IPR036388 Winged helix-like DNA-binding domain superfamily PF550_12460 IPR036390 Winged helix DNA-binding domain superfamily PF550_12465 IPR036388 Winged helix-like DNA-binding domain superfamily PF550_12465 IPR036390 Winged helix DNA-binding domain superfamily PF550_12465 IPR002577 Helix-turn-helix, HxlR type PF550_12465 IPR011991 ArsR-like helix-turn-helix domain PF550_12470 IPR038987 Molybdopterin biosynthesis protein MoeA-like PF550_12470 IPR036135 MoeA, N-terminal and linker domain superfamily PF550_12470 IPR005110 MoeA, N-terminal and linker domain PF550_12470 IPR008284 Molybdenum cofactor biosynthesis, conserved site PF550_12470 IPR005111 MoeA, C-terminal, domain IV PF550_12470 IPR036425 MoaB/Mog-like domain superfamily PF550_12470 IPR001453 MoaB/Mog domain PF550_12470 IPR036688 MoeA, C-terminal, domain IV superfamily PF550_12475 IPR023045 Molybdenum cofactor biosynthesis C PF550_12475 IPR036425 MoaB/Mog-like domain superfamily PF550_12475 IPR001453 MoaB/Mog domain PF550_12475 IPR012247 Bifunctional molybdenum cofactor biosynthesis protein MoaC/MogA PF550_12475 IPR036522 Molybdopterin cofactor biosynthesis C (MoaC) domain superfamily PF550_12475 IPR002820 Molybdopterin cofactor biosynthesis C (MoaC) domain PF550_12480 IPR036563 Molybdopterin biosynthesis MoaE subunit superfamily PF550_12480 IPR003448 Molybdopterin biosynthesis MoaE PF550_12490 IPR007197 Radical SAM PF550_12490 IPR010505 Molybdenum cofactor synthesis C-terminal PF550_12490 IPR000385 MoaA/nifB/pqqE, iron-sulphur binding, conserved site PF550_12490 IPR013483 Molybdenum cofactor biosynthesis protein A PF550_12490 IPR006638 Elp3/MiaB/NifB PF550_12490 IPR013785 Aldolase-type TIM barrel PF550_12495 IPR009010 Aspartate decarboxylase-like domain superfamily PF550_12495 IPR041957 Nitrate reductase NapA-like, molybdopterin-binding domain PF550_12495 IPR006657 Molybdopterin dinucleotide-binding domain PF550_12495 IPR006656 Molybdopterin oxidoreductase PF550_12495 IPR006963 Molybdopterin oxidoreductase, 4Fe-4S domain PF550_12495 IPR027467 Molybdopterin oxidoreductase, molybdopterin cofactor binding site PF550_12500 IPR025877 MobA-like NTP transferase PF550_12500 IPR013482 Molybdenum cofactor guanylyltransferase PF550_12500 IPR029044 Nucleotide-diphospho-sugar transferases PF550_12505 IPR027467 Molybdopterin oxidoreductase, molybdopterin cofactor binding site PF550_12505 IPR006656 Molybdopterin oxidoreductase PF550_12505 IPR006657 Molybdopterin dinucleotide-binding domain PF550_12505 IPR006963 Molybdopterin oxidoreductase, 4Fe-4S domain PF550_12505 IPR041854 BFD-like [2Fe-2S]-binding domain superfamily PF550_12505 IPR007419 BFD-like [2Fe-2S]-binding domain PF550_12505 IPR009010 Aspartate decarboxylase-like domain superfamily PF550_12505 IPR041957 Nitrate reductase NapA-like, molybdopterin-binding domain PF550_12510 IPR041575 NADH-rubredoxin oxidoreductase, C-terminal PF550_12510 IPR006066 Nitrite/sulphite reductase iron-sulphur/sirohaem-binding site PF550_12510 IPR006067 Nitrite/sulphite reductase 4Fe-4S domain PF550_12510 IPR017121 Nitrite reductase [NAD(P)H], large subunit PF550_12510 IPR036136 Nitrite/Sulfite reductase ferredoxin-like domain superfamily PF550_12510 IPR012744 Nitrite reductase [NAD(P)H] large subunit, NirB PF550_12510 IPR016156 FAD/NAD-linked reductase, dimerisation domain superfamily PF550_12510 IPR023753 FAD/NAD(P)-binding domain PF550_12510 IPR036188 FAD/NAD(P)-binding domain superfamily PF550_12510 IPR041854 BFD-like [2Fe-2S]-binding domain superfamily PF550_12510 IPR007419 BFD-like [2Fe-2S]-binding domain PF550_12510 IPR005117 Nitrite/Sulfite reductase ferredoxin-like domain PF550_12515 IPR006066 Nitrite/sulphite reductase iron-sulphur/sirohaem-binding site PF550_12515 IPR041575 NADH-rubredoxin oxidoreductase, C-terminal PF550_12515 IPR036922 Rieske [2Fe-2S] iron-sulphur domain superfamily PF550_12515 IPR012748 Rieske-like [2Fe-2S] domain, NirD-type PF550_12515 IPR006067 Nitrite/sulphite reductase 4Fe-4S domain PF550_12515 IPR036188 FAD/NAD(P)-binding domain superfamily PF550_12515 IPR036136 Nitrite/Sulfite reductase ferredoxin-like domain superfamily PF550_12515 IPR005117 Nitrite/Sulfite reductase ferredoxin-like domain PF550_12515 IPR023753 FAD/NAD(P)-binding domain PF550_12515 IPR041854 BFD-like [2Fe-2S]-binding domain superfamily PF550_12515 IPR007419 BFD-like [2Fe-2S]-binding domain PF550_12515 IPR012744 Nitrite reductase [NAD(P)H] large subunit, NirB PF550_12525 IPR011006 CheY-like superfamily PF550_12525 IPR001867 OmpR/PhoB-type DNA-binding domain PF550_12525 IPR016032 Signal transduction response regulator, C-terminal effector PF550_12525 IPR001789 Signal transduction response regulator, receiver domain PF550_12525 IPR039420 Transcriptional regulatory protein WalR-like PF550_12525 IPR036388 Winged helix-like DNA-binding domain superfamily PF550_12530 IPR005890 Nitrate transport ATP-binding subunit C/D PF550_12530 IPR027417 P-loop containing nucleoside triphosphate hydrolase PF550_12530 IPR003439 ABC transporter-like PF550_12530 IPR003593 AAA+ ATPase domain PF550_12530 IPR017871 ABC transporter, conserved site PF550_12535 IPR036775 DNA polymerase, Y-family, little finger domain superfamily PF550_12535 IPR017961 DNA polymerase, Y-family, little finger domain PF550_12535 IPR025188 Domain of unknown function DUF4113 PF550_12535 IPR001126 UmuC domain PF550_12540 IPR036441 Dehydroquinase, class II superfamily PF550_12540 IPR001874 Dehydroquinase, class II PF550_12540 IPR018509 Dehydroquinase, class II, conserved site PF550_12545 IPR001249 Acetyl-CoA biotin carboxyl carrier PF550_12545 IPR001882 Biotin-binding site PF550_12545 IPR000089 Biotin/lipoyl attachment PF550_12545 IPR011053 Single hybrid motif PF550_12550 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain PF550_12550 IPR011054 Rudiment single hybrid motif PF550_12550 IPR016185 Pre-ATP-grasp domain superfamily PF550_12550 IPR005482 Biotin carboxylase, C-terminal PF550_12550 IPR005481 Biotin carboxylase-like, N-terminal domain PF550_12550 IPR013815 ATP-grasp fold, subdomain 1 PF550_12550 IPR011761 ATP-grasp fold PF550_12550 IPR004549 Acetyl-CoA carboxylase, biotin carboxylase PF550_12550 IPR011764 Biotin carboxylation domain PF550_12560 IPR026032 Probable 3-phenylpropionic acid transporter PF550_12560 IPR024989 Major facilitator superfamily associated domain PF550_12560 IPR036259 MFS transporter superfamily PF550_12580 IPR013785 Aldolase-type TIM barrel PF550_12580 IPR024188 Glutamate synthase large subunit-like protein PF550_12580 IPR002932 Glutamate synthase domain PF550_12580 IPR027283 Glutamate synthase large subunit-like protein, bacteria PF550_12595 IPR011601 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal PF550_12595 IPR006094 FAD linked oxidase, N-terminal PF550_12595 IPR003170 UDP-N-acetylenolpyruvoylglucosamine reductase PF550_12595 IPR036635 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain superfamily PF550_12595 IPR016167 FAD-binding, type PCMH, subdomain 1 PF550_12595 IPR036318 FAD-binding, type PCMH-like superfamily PF550_12595 IPR016166 FAD-binding domain, PCMH-type PF550_12595 IPR016169 FAD-binding, type PCMH, subdomain 2 PF550_12600 IPR023485 Phosphotyrosine protein phosphatase I PF550_12600 IPR036196 Phosphotyrosine protein phosphatase I superfamily PF550_12600 IPR017867 Protein-tyrosine phosphatase, low molecular weight PF550_12610 IPR001670 Alcohol dehydrogenase, iron-type/glycerol dehydrogenase GldA PF550_12610 IPR018211 Alcohol dehydrogenase, iron-type, conserved site PF550_12610 IPR039697 Iron-type alcohol dehydrogenase-like PF550_12615 IPR006683 Thioesterase domain PF550_12615 IPR029069 HotDog domain superfamily PF550_12620 IPR017850 Alkaline-phosphatase-like, core domain superfamily PF550_12620 IPR017767 Bacterial phospholipase C, phosphocholine-specific PF550_12620 IPR007312 Phosphoesterase PF550_12620 IPR008475 Bacterial phospholipase C, C-terminal domain PF550_12620 IPR006311 Twin-arginine translocation pathway, signal sequence PF550_12630 IPR038249 DNA polymerase III, tau subunit, C-terminal domain superfamily PF550_12630 IPR027417 P-loop containing nucleoside triphosphate hydrolase PF550_12630 IPR021029 DNA polymerase III, tau subunit, domain V PF550_12630 IPR012763 DNA polymerase III, subunit gamma/ tau PF550_12630 IPR008921 DNA polymerase III, clamp loader complex, gamma/delta/delta subunit, C-terminal PF550_12630 IPR022754 DNA polymerase III, gamma subunit, domain III PF550_12630 IPR022001 DNA polymerase III subunit tau, DnaB-binding domain IV PF550_12630 IPR001270 ClpA/B family PF550_12630 IPR003593 AAA+ ATPase domain PF550_12635 IPR011701 Major facilitator superfamily PF550_12635 IPR020846 Major facilitator superfamily domain PF550_12635 IPR036259 MFS transporter superfamily PF550_12645 IPR001466 Beta-lactamase-related PF550_12645 IPR012338 Beta-lactamase/transpeptidase-like PF550_12650 IPR003965 Fatty acid synthase PF550_12650 IPR029069 HotDog domain superfamily PF550_12650 IPR002539 MaoC-like dehydratase domain PF550_12655 IPR011284 3-oxoacyl-(acyl-carrier-protein) reductase PF550_12655 IPR036291 NAD(P)-binding domain superfamily PF550_12655 IPR020904 Short-chain dehydrogenase/reductase, conserved site PF550_12655 IPR002347 Short-chain dehydrogenase/reductase SDR PF550_12660 IPR002155 Thiolase PF550_12660 IPR020616 Thiolase, N-terminal PF550_12660 IPR020613 Thiolase, conserved site PF550_12660 IPR016039 Thiolase-like PF550_12660 IPR020610 Thiolase, active site PF550_12660 IPR012806 Acetyl-CoA C-acyltransferase FadI PF550_12660 IPR020617 Thiolase, C-terminal PF550_12670 IPR005119 LysR, substrate-binding PF550_12670 IPR000847 Transcription regulator HTH, LysR PF550_12670 IPR036388 Winged helix-like DNA-binding domain superfamily PF550_12670 IPR036390 Winged helix DNA-binding domain superfamily PF550_12675 IPR018225 Transaldolase, active site PF550_12675 IPR004730 Transaldolase type 1 PF550_12675 IPR001585 Transaldolase/Fructose-6-phosphate aldolase PF550_12675 IPR013785 Aldolase-type TIM barrel PF550_12685 IPR039552 Transposase IS66, C-terminal PF550_12685 IPR004291 Transposase, IS66 PF550_12685 IPR024463 Transposase TnpC, homeodomain PF550_12685 IPR024474 Zinc-finger binding domain of transposase IS66 PF550_12695 IPR009057 Homeobox-like domain superfamily PF550_12705 IPR019885 Transcription regulator HTH, AsnC-type, conserved site PF550_12705 IPR036388 Winged helix-like DNA-binding domain superfamily PF550_12705 IPR036390 Winged helix DNA-binding domain superfamily PF550_12705 IPR000485 AsnC-type HTH domain PF550_12705 IPR011991 ArsR-like helix-turn-helix domain PF550_12705 IPR019887 Transcription regulator AsnC/Lrp, ligand binding domain PF550_12705 IPR011008 Dimeric alpha-beta barrel PF550_12705 IPR019888 Transcription regulator AsnC-type PF550_12710 IPR004711 Benzoate transporter PF550_12715 IPR003416 MgtC/SapB/SrpB/YhiD family PF550_12720 IPR006415 P-type ATPase, subfamily IIIB PF550_12720 IPR023214 HAD superfamily PF550_12720 IPR036412 HAD-like superfamily PF550_12720 IPR008250 P-type ATPase, A domain superfamily PF550_12720 IPR023298 P-type ATPase, transmembrane domain superfamily PF550_12720 IPR006068 Cation-transporting P-type ATPase, C-terminal PF550_12720 IPR001757 P-type ATPase PF550_12720 IPR004014 Cation-transporting P-type ATPase, N-terminal PF550_12720 IPR023299 P-type ATPase, cytoplasmic domain N PF550_12720 IPR018303 P-type ATPase, phosphorylation site PF550_12745 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold PF550_12745 IPR006015 Universal stress protein A family PF550_12745 IPR006016 UspA PF550_12750 IPR003439 ABC transporter-like PF550_12750 IPR027417 P-loop containing nucleoside triphosphate hydrolase PF550_12750 IPR017871 ABC transporter, conserved site PF550_12750 IPR032781 ABC-transporter extension domain PF550_12750 IPR003593 AAA+ ATPase domain PF550_12770 IPR037066 TonB-dependent receptor, plug domain superfamily PF550_12770 IPR039423 TonB-dependent receptor-like PF550_12770 IPR012910 TonB-dependent receptor, plug domain PF550_12770 IPR000531 TonB-dependent receptor-like, beta-barrel PF550_12770 IPR036942 TonB-dependent receptor-like, beta-barrel domain superfamily PF550_12770 IPR010917 TonB-dependent receptor, conserved site PF550_12770 IPR010105 TonB-dependent siderophore receptor PF550_12770 IPR010916 TonB box, conserved site PF550_12800 IPR011066 Mechanosensitive ion channel MscS, C-terminal PF550_12800 IPR006685 Mechanosensitive ion channel MscS PF550_12800 IPR010920 LSM domain superfamily PF550_12800 IPR030192 Miniconductance mechanosensitive channel YbdG PF550_12805 IPR012910 TonB-dependent receptor, plug domain PF550_12805 IPR036942 TonB-dependent receptor-like, beta-barrel domain superfamily PF550_12805 IPR039426 Vitamin B12 transporter BtuB-like PF550_12805 IPR037066 TonB-dependent receptor, plug domain superfamily PF550_12805 IPR000531 TonB-dependent receptor-like, beta-barrel PF550_12805 IPR010105 TonB-dependent siderophore receptor PF550_12810 IPR001647 DNA-binding HTH domain, TetR-type PF550_12810 IPR009057 Homeobox-like domain superfamily PF550_12820 IPR036388 Winged helix-like DNA-binding domain superfamily PF550_12820 IPR019885 Transcription regulator HTH, AsnC-type, conserved site PF550_12820 IPR019887 Transcription regulator AsnC/Lrp, ligand binding domain PF550_12820 IPR019888 Transcription regulator AsnC-type PF550_12820 IPR011991 ArsR-like helix-turn-helix domain PF550_12820 IPR000485 AsnC-type HTH domain PF550_12820 IPR011008 Dimeric alpha-beta barrel PF550_12820 IPR036390 Winged helix DNA-binding domain superfamily PF550_12825 IPR036263 Chorismate mutase type II superfamily PF550_12825 IPR008240 Chorismate mutase, periplasmic PF550_12825 IPR002701 Chorismate mutase II, prokaryotic-type PF550_12850 IPR000015 Outer membrane usher protein PF550_12850 IPR018030 Fimbrial membrane usher, conserved site PF550_12850 IPR042186 Outer membrane usher protein FimD, plug domain PF550_12850 IPR025949 PapC-like, C-terminal domain PF550_12850 IPR025885 PapC, N-terminal domain PF550_12850 IPR037224 PapC, N-terminal domain superfamily PF550_12865 IPR027268 Peptidase M4/M1, CTD superfamily PF550_12865 IPR035414 Peptidase M1, alanyl aminopeptidase, Ig-like fold PF550_12865 IPR037144 Peptidase M1, alanyl aminopeptidase, C-terminal domain superfamily PF550_12865 IPR024601 Peptidase M1, alanyl aminopeptidase, C-terminal PF550_12865 IPR012779 Peptidase M1, alanyl aminopeptidase PF550_12865 IPR014782 Peptidase M1, membrane alanine aminopeptidase PF550_12865 IPR001930 Peptidase M1, alanine aminopeptidase/leukotriene A4 hydrolase PF550_12865 IPR038438 Alanyl aminopeptidase, Ig-like domain superfamily PF550_12865 IPR042097 Aminopeptidase N-like , N-terminal PF550_12880 IPR029056 Ribokinase-like PF550_12880 IPR000417 Hydroxyethylthiazole kinase PF550_12885 IPR029442 GyrI-like small molecule binding domain PF550_12885 IPR010499 Bacterial transcription activator, effector binding PF550_12885 IPR011256 Regulatory factor, effector binding domain superfamily PF550_12895 IPR027417 P-loop containing nucleoside triphosphate hydrolase PF550_12895 IPR003593 AAA+ ATPase domain PF550_12895 IPR010285 DNA helicase Pif1-like PF550_12895 IPR029491 Helicase Helix-turn-helix domain PF550_12900 IPR001670 Alcohol dehydrogenase, iron-type/glycerol dehydrogenase GldA PF550_12900 IPR018211 Alcohol dehydrogenase, iron-type, conserved site PF550_12900 IPR039697 Iron-type alcohol dehydrogenase-like PF550_12910 IPR029016 GAF-like domain superfamily PF550_12915 IPR016162 Aldehyde dehydrogenase, N-terminal PF550_12915 IPR016161 Aldehyde/histidinol dehydrogenase PF550_12915 IPR016163 Aldehyde dehydrogenase, C-terminal PF550_12915 IPR029510 Aldehyde dehydrogenase, glutamic acid active site PF550_12915 IPR016160 Aldehyde dehydrogenase, cysteine active site PF550_12915 IPR015590 Aldehyde dehydrogenase domain PF550_12920 IPR002293 Amino acid/polyamine transporter I PF550_12925 IPR010628 Ethanolamine ammonia lyase large subunit PF550_12925 IPR013785 Aldolase-type TIM barrel PF550_12930 IPR042255 Ethanolamine ammonia-lyase light chain, N-terminal PF550_12930 IPR042251 Ethanolamine ammonia-lyase light chain, C-terminal PF550_12930 IPR009246 Ethanolamine ammonia-lyase light chain PF550_12935 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold PF550_12935 IPR004739 GMP synthase, glutamine amidotransferase PF550_12935 IPR022310 NAD/GMP synthase PF550_12935 IPR025777 GMP synthetase ATP pyrophosphatase domain PF550_12935 IPR022955 GMP synthase PF550_12935 IPR017926 Glutamine amidotransferase PF550_12935 IPR029062 Class I glutamine amidotransferase-like PF550_12935 IPR001674 GMP synthase, C-terminal PF550_12940 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold PF550_12940 IPR011035 Ribosomal protein L25/Gln-tRNA synthetase, anti-codon-binding domain superfamily PF550_12940 IPR020061 Glutamine-tRNA ligase, alpha-bundle domain superfamily PF550_12940 IPR020059 Glutamyl/glutaminyl-tRNA synthetase, class Ib, anti-codon binding domain PF550_12940 IPR020058 Glutamyl/glutaminyl-tRNA synthetase, class Ib, catalytic domain PF550_12940 IPR000924 Glutamyl/glutaminyl-tRNA synthetase PF550_12940 IPR020056 Ribosomal protein L25/Gln-tRNA synthetase, N-terminal PF550_12940 IPR004514 Glutamine-tRNA synthetase PF550_12940 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site PF550_12940 IPR022861 Glutamine-tRNA ligase, bacterial PF550_12945 IPR002130 Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain PF550_12945 IPR020892 Cyclophilin-type peptidyl-prolyl cis-trans isomerase, conserved site PF550_12945 IPR024936 Cyclophilin-type peptidyl-prolyl cis-trans isomerase PF550_12945 IPR029000 Cyclophilin-like domain superfamily PF550_12950 IPR010138 UDP-2,3-diacylglucosamine hydrolase PF550_12950 IPR004843 Calcineurin-like phosphoesterase domain, ApaH type PF550_12960 IPR000415 Nitroreductase-like PF550_12960 IPR033878 Nitroreductase NfsB-like PF550_12960 IPR029479 Nitroreductase PF550_12970 IPR010920 LSM domain superfamily PF550_12970 IPR005001 RNA-binding protein Hfq PF550_12975 IPR039657 Dimethylallyltransferase PF550_12975 IPR018022 IPP transferase PF550_12975 IPR027417 P-loop containing nucleoside triphosphate hydrolase PF550_12980 IPR002099 DNA mismatch repair protein family, N-terminal PF550_12980 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup PF550_12980 IPR013507 DNA mismatch repair protein, S5 domain 2-like PF550_12980 IPR036890 Histidine kinase/HSP90-like ATPase superfamily PF550_12980 IPR038973 DNA mismatch repair protein MutL/Mlh/Pms PF550_12980 IPR014790 MutL, C-terminal, dimerisation PF550_12980 IPR042120 MutL, C-terminal domain, dimerisation subdomain PF550_12980 IPR042121 MutL, C-terminal domain, regulatory subdomain PF550_12980 IPR037198 MutL, C-terminal domain superfamily PF550_12980 IPR020568 Ribosomal protein S5 domain 2-type fold PF550_12980 IPR020667 DNA mismatch repair protein, MutL PF550_12980 IPR014762 DNA mismatch repair, conserved site PF550_12985 IPR027417 P-loop containing nucleoside triphosphate hydrolase PF550_12985 IPR003442 tRNA threonylcarbamoyl adenosine modification protein TsaE PF550_12990 IPR002942 RNA-binding S4 domain PF550_12990 IPR020103 Pseudouridine synthase, catalytic domain superfamily PF550_12990 IPR006225 Pseudouridine synthase, RluC/RluD PF550_12990 IPR006224 Pseudouridine synthase, RluC/RluD, conserved site PF550_12990 IPR006145 Pseudouridine synthase, RsuA/RluA PF550_12990 IPR036986 RNA-binding S4 domain superfamily PF550_13005 IPR036986 RNA-binding S4 domain superfamily PF550_13005 IPR018496 Pseudouridine synthase, RsuA/RluB/E/F, conserved site PF550_13005 IPR002942 RNA-binding S4 domain PF550_13005 IPR000748 Pseudouridine synthase, RsuA/RluB/E/F PF550_13005 IPR042092 Pseudouridine synthase, RsuA/RluB/E/F, catalytic domain PF550_13005 IPR020103 Pseudouridine synthase, catalytic domain superfamily PF550_13005 IPR006145 Pseudouridine synthase, RsuA/RluA PF550_13015 IPR007382 Uncharacterised protein family UPF0756, transmembrame PF550_13020 IPR037406 HTH-type transcriptional regulator MetR, PBP2 domain PF550_13020 IPR005119 LysR, substrate-binding PF550_13020 IPR036390 Winged helix DNA-binding domain superfamily PF550_13020 IPR000847 Transcription regulator HTH, LysR PF550_13020 IPR036388 Winged helix-like DNA-binding domain superfamily PF550_13035 IPR011701 Major facilitator superfamily PF550_13035 IPR020846 Major facilitator superfamily domain PF550_13035 IPR036259 MFS transporter superfamily PF550_13040 IPR000595 Cyclic nucleotide-binding domain PF550_13040 IPR005821 Ion transport domain PF550_13040 IPR014710 RmlC-like jelly roll fold PF550_13040 IPR028325 Voltage-gated potassium channel PF550_13040 IPR018490 Cyclic nucleotide-binding-like PF550_13040 IPR018488 Cyclic nucleotide-binding, conserved site PF550_13050 IPR015929 Aconitase B, swivel PF550_13050 IPR015932 Aconitase, domain 2 PF550_13050 IPR004406 Aconitase B PF550_13050 IPR015931 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha, subdomain 1/3 PF550_13050 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain PF550_13050 IPR015928 Aconitase/3-isopropylmalate dehydratase, swivel PF550_13050 IPR018136 Aconitase family, 4Fe-4S cluster binding site PF550_13050 IPR036288 Aconitase B, HEAT-like domain superfamily PF550_13050 IPR015933 Aconitase B, HEAT-like domain PF550_13050 IPR036008 Aconitase, iron-sulfur domain PF550_13065 IPR034746 POTRA domain PF550_13065 IPR039910 Surface antigen D15-like PF550_13065 IPR010827 POTRA domain, BamA/TamA-like PF550_13065 IPR000184 Bacterial surface antigen (D15) PF550_13065 IPR035243 TamA, POTRA domain 1 PF550_13070 IPR023727 Lysophospholipid transporter LplT PF550_13070 IPR036259 MFS transporter superfamily PF550_13070 IPR011701 Major facilitator superfamily PF550_13075 IPR009078 Ferritin-like superfamily PF550_13075 IPR011566 Ubiquinone biosynthesis protein Coq7 PF550_13085 IPR027303 Glutamine synthetase, glycine-rich site PF550_13085 IPR036651 Glutamine synthetase, N-terminal domain superfamily PF550_13085 IPR014746 Glutamine synthetase/guanido kinase, catalytic domain PF550_13085 IPR008146 Glutamine synthetase, catalytic domain PF550_13090 IPR039420 Transcriptional regulatory protein WalR-like PF550_13090 IPR036388 Winged helix-like DNA-binding domain superfamily PF550_13090 IPR001789 Signal transduction response regulator, receiver domain PF550_13090 IPR011006 CheY-like superfamily PF550_13090 IPR001867 OmpR/PhoB-type DNA-binding domain PF550_13095 IPR003852 Signal transduction histidine kinase, osmosensitive K+ channel sensor, N-terminal PF550_13095 IPR004358 Signal transduction histidine kinase-related protein, C-terminal PF550_13095 IPR038318 KdpD, transmembrane domain superfamily PF550_13095 IPR025201 Sensor protein KdpD, transmembrane domain PF550_13095 IPR036890 Histidine kinase/HSP90-like ATPase superfamily PF550_13095 IPR003594 Histidine kinase/HSP90-like ATPase PF550_13095 IPR005467 Histidine kinase domain PF550_13095 IPR029016 GAF-like domain superfamily PF550_13095 IPR027417 P-loop containing nucleoside triphosphate hydrolase PF550_13095 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain PF550_13095 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily PF550_13100 IPR003820 Potassium-transporting ATPase C chain PF550_13105 IPR023298 P-type ATPase, transmembrane domain superfamily PF550_13105 IPR008250 P-type ATPase, A domain superfamily PF550_13105 IPR036412 HAD-like superfamily PF550_13105 IPR006391 P-type ATPase, B chain, subfamily IA PF550_13105 IPR023299 P-type ATPase, cytoplasmic domain N PF550_13105 IPR018303 P-type ATPase, phosphorylation site PF550_13105 IPR001757 P-type ATPase PF550_13110 IPR023298 P-type ATPase, transmembrane domain superfamily PF550_13110 IPR004623 Potassium-transporting ATPase A chain PF550_13120 IPR006156 Dihydroneopterin aldolase PF550_13120 IPR006157 Dihydroneopterin aldolase/epimerase domain PF550_13125 IPR004147 UbiB domain PF550_13125 IPR000719 Protein kinase domain PF550_13125 IPR011009 Protein kinase-like domain superfamily PF550_13130 IPR012730 Molybdopterin synthase sulfurylase MoeB PF550_13130 IPR000594 THIF-type NAD/FAD binding fold PF550_13130 IPR035985 Ubiquitin-activating enzyme PF550_13135 IPR002563 Flavin reductase like domain PF550_13135 IPR012349 FMN-binding split barrel PF550_13140 IPR000873 AMP-dependent synthetase/ligase PF550_13140 IPR025110 AMP-binding enzyme, C-terminal domain PF550_13140 IPR020845 AMP-binding, conserved site PF550_13140 IPR042099 AMP-dependent synthetase-like superfamily PF550_13145 IPR006089 Acyl-CoA dehydrogenase, conserved site PF550_13145 IPR006091 Acyl-CoA oxidase/dehydrogenase, central domain PF550_13145 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal PF550_13145 IPR036250 Acyl-CoA dehydrogenase-like, C-terminal PF550_13145 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily PF550_13145 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal PF550_13145 IPR037069 Acyl-CoA dehydrogenase/oxidase, N-terminal domain superfamily PF550_13150 IPR020904 Short-chain dehydrogenase/reductase, conserved site PF550_13150 IPR002347 Short-chain dehydrogenase/reductase SDR PF550_13150 IPR036291 NAD(P)-binding domain superfamily PF550_13155 IPR018062 HTH domain AraC-type, conserved site PF550_13155 IPR009057 Homeobox-like domain superfamily PF550_13155 IPR018060 DNA binding HTH domain, AraC-type PF550_13155 IPR020449 Transcription regulator HTH, AraC- type PF550_13160 IPR019874 Protein-(glutamine-N5) methyltransferase, release factor-specific PF550_13160 IPR040758 Release factor glutamine methyltransferase, N-terminal domain PF550_13160 IPR025714 Methyltransferase domain PF550_13160 IPR004556 Methyltransferase HemK-like PF550_13160 IPR002052 DNA methylase, N-6 adenine-specific, conserved site PF550_13160 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase PF550_13165 IPR005139 Peptide chain release factor PF550_13165 IPR000352 Peptide chain release factor class I PF550_13165 IPR004373 Peptide chain release factor 1 PF550_13175 IPR036390 Winged helix DNA-binding domain superfamily PF550_13175 IPR036388 Winged helix-like DNA-binding domain superfamily PF550_13175 IPR000847 Transcription regulator HTH, LysR PF550_13175 IPR005119 LysR, substrate-binding PF550_13190 IPR019949 Luciferase family oxidoreductase, group 1 PF550_13190 IPR036661 Luciferase-like domain superfamily PF550_13190 IPR011251 Luciferase-like domain PF550_13200 IPR023829 Poly-beta-1,6-N-acetyl-D-glucosamine biosynthesis protein PgaD PF550_13205 IPR023853 Poly-beta-1,6 N-acetyl-D-glucosamine synthase PgaC/IcaA PF550_13205 IPR001173 Glycosyltransferase 2-like PF550_13205 IPR029044 Nucleotide-diphospho-sugar transferases PF550_13210 IPR023854 Poly-beta-1,6-N-acetyl-D-glucosamine N-deacetylase PgaB PF550_13210 IPR011330 Glycoside hydrolase/deacetylase, beta/alpha-barrel PF550_13210 IPR002509 NodB homology domain PF550_13210 IPR032772 Poly-beta-1,6-N-acetyl-D-glucosamine N-deacetylase PgaB, C-terminal PF550_13220 IPR026530 Phosphoenolpyruvate synthase regulatory protein PF550_13220 IPR005177 Bifunctional kinase-pyrophosphorylase PF550_13225 IPR002192 Pyruvate phosphate dikinase, PEP/pyruvate-binding PF550_13225 IPR018274 PEP-utilising enzyme, active site PF550_13225 IPR006319 Phosphoenolpyruvate synthase PF550_13225 IPR008279 PEP-utilising enzyme, mobile domain PF550_13225 IPR013815 ATP-grasp fold, subdomain 1 PF550_13225 IPR023151 PEP-utilising enzyme, conserved site PF550_13225 IPR036637 Phosphohistidine domain superfamily PF550_13225 IPR000121 PEP-utilising enzyme, C-terminal PF550_13225 IPR040442 Pyruvate kinase-like domain superfamily PF550_13225 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain superfamily PF550_13235 IPR011759 Cytochrome C oxidase subunit II, transmembrane domain PF550_13235 IPR034227 Ubiquinol oxidase subunit 2, cupredoxin domain PF550_13235 IPR008972 Cupredoxin PF550_13235 IPR010514 COX aromatic rich motif PF550_13235 IPR002429 Cytochrome c oxidase subunit II-like C-terminal PF550_13235 IPR036257 Cytochrome C oxidase subunit II, transmembrane domain superfamily PF550_13235 IPR006333 Cytochrome o ubiquinol oxidase subunit II PF550_13240 IPR000883 Cytochrome c oxidase subunit I PF550_13240 IPR014207 Cytochrome o ubiquinol oxidase, subunit I PF550_13240 IPR023615 Cytochrome c oxidase, subunit I, copper-binding site PF550_13240 IPR036927 Cytochrome c oxidase-like, subunit I superfamily PF550_13240 IPR023616 Cytochrome c oxidase-like, subunit I domain PF550_13245 IPR033946 Ubiquinol oxidase subunit III domain PF550_13245 IPR013833 Cytochrome c oxidase, subunit III, 4-helical bundle PF550_13245 IPR000298 Cytochrome c oxidase subunit III-like PF550_13245 IPR024791 Cytochrome c oxidase subunit III PF550_13245 IPR014206 Cytochrome o ubiquinol oxidase, subunit III PF550_13245 IPR035973 Cytochrome c oxidase subunit III-like superfamily PF550_13250 IPR005171 Cytochrome C oxidase subunit IV, prokaryotes PF550_13250 IPR014210 Cytochrome o ubiquinol oxidase subunit IV PF550_13255 IPR006369 Protohaem IX farnesyltransferase PF550_13255 IPR000537 UbiA prenyltransferase family PF550_13255 IPR030470 UbiA prenyltransferase conserved site PF550_13260 IPR020814 Ribosomal protein S6, plastid/chloroplast PF550_13260 IPR000529 Ribosomal protein S6 PF550_13260 IPR020815 Ribosomal protein S6, conserved site PF550_13260 IPR035980 Ribosomal protein S6 superfamily PF550_13260 IPR014717 Translation elongation factor EF1B/ribosomal protein S6 PF550_13265 IPR036870 Ribosomal protein S18 superfamily PF550_13265 IPR001648 Ribosomal protein S18 PF550_13265 IPR018275 Ribosomal protein S18, conserved site PF550_13270 IPR036935 Ribosomal protein L9, N-terminal domain superfamily PF550_13270 IPR036791 Ribosomal protein L9, C-terminal domain superfamily PF550_13270 IPR020069 Ribosomal protein L9, C-terminal PF550_13270 IPR020594 Ribosomal protein L9, bacteria/chloroplast PF550_13270 IPR009027 Ribosomal protein L9/RNase H1, N-terminal PF550_13270 IPR020070 Ribosomal protein L9, N-terminal PF550_13270 IPR000244 Ribosomal protein L9 PF550_13275 IPR003593 AAA+ ATPase domain PF550_13275 IPR036185 DNA helicase, DnaB-like, N-terminal domain superfamily PF550_13275 IPR007692 DNA helicase, DnaB type PF550_13275 IPR007694 DNA helicase, DnaB-like, C-terminal PF550_13275 IPR007693 DNA helicase, DnaB-like, N-terminal PF550_13275 IPR016136 DNA helicase DnaB, N-terminal/DNA primase DnaG, C-terminal PF550_13275 IPR027417 P-loop containing nucleoside triphosphate hydrolase PF550_13280 IPR029066 PLP-binding barrel PF550_13280 IPR001608 Alanine racemase, N-terminal PF550_13280 IPR009006 Alanine racemase/group IV decarboxylase, C-terminal PF550_13280 IPR011079 Alanine racemase, C-terminal PF550_13280 IPR000821 Alanine racemase PF550_13290 IPR002931 Transglutaminase-like PF550_13290 IPR013589 Bacterial transglutaminase-like, N-terminal PF550_13290 IPR038765 Papain-like cysteine peptidase superfamily PF550_13300 IPR025841 Circularly permuted ATP-grasp type 2 PF550_13300 IPR016450 Uncharacterised conserved protein UCP005522 PF550_13310 IPR036188 FAD/NAD(P)-binding domain superfamily PF550_13310 IPR026904 GidA associated domain 3 PF550_13310 IPR004416 tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG PF550_13310 IPR002218 tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG-related PF550_13310 IPR020595 MnmG-related, conserved site PF550_13320 IPR004498 Ribosomal protein L11 methyltransferase PF550_13320 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase PF550_13330 IPR009057 Homeobox-like domain superfamily PF550_13330 IPR002197 DNA binding HTH domain, Fis-type PF550_13330 IPR005412 DNA-binding protein Fis PF550_13335 IPR024051 AICAR transformylase, duplicated domain superfamily PF550_13335 IPR016193 Cytidine deaminase-like PF550_13335 IPR011607 Methylglyoxal synthase-like domain PF550_13335 IPR036914 Methylglyoxal synthase-like domain superfamily PF550_13335 IPR002695 Bifunctional purine biosynthesis protein PurH-like PF550_13340 IPR011054 Rudiment single hybrid motif PF550_13340 IPR037123 Phosphoribosylglycinamide synthetase, C-domain superfamily PF550_13340 IPR020562 Phosphoribosylglycinamide synthetase, N-terminal PF550_13340 IPR011761 ATP-grasp fold PF550_13340 IPR013815 ATP-grasp fold, subdomain 1 PF550_13340 IPR016185 Pre-ATP-grasp domain superfamily PF550_13340 IPR020561 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain PF550_13340 IPR000115 Phosphoribosylglycinamide synthetase PF550_13340 IPR020560 Phosphoribosylglycinamide synthetase, C-domain PF550_13340 IPR020559 Phosphoribosylglycinamide synthetase, conserved site PF550_13345 IPR004872 Lipoprotein NlpA family PF550_13350 IPR027417 P-loop containing nucleoside triphosphate hydrolase PF550_13350 IPR018449 NIL domain PF550_13350 IPR003593 AAA+ ATPase domain PF550_13350 IPR026253 Methionine import ATP-binding protein MetN PF550_13350 IPR003439 ABC transporter-like PF550_13350 IPR017871 ABC transporter, conserved site PF550_13350 IPR017908 ABC transporter, methionine import, ATP-binding protein, MetN, C-terminal PF550_13350 IPR041701 Methionine import ATP-binding protein MetN, ATP-binding cassette domain PF550_13355 IPR000515 ABC transporter type 1, transmembrane domain MetI-like PF550_13355 IPR035906 MetI-like superfamily PF550_13360 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like PF550_13360 IPR035680 Hydroxyacylglutathione hydrolase, MBL domain PF550_13360 IPR017782 Hydroxyacylglutathione hydrolase PF550_13360 IPR001279 Metallo-beta-lactamase PF550_13360 IPR032282 Hydroxyacylglutathione hydrolase, C-terminal domain PF550_13370 IPR001991 Sodium:dicarboxylate symporter PF550_13370 IPR023954 C4-dicarboxylate transport protein PF550_13370 IPR018107 Sodium:dicarboxylate symporter, conserved site PF550_13370 IPR036458 Sodium:dicarboxylate symporter superfamily PF550_13390 IPR011042 Six-bladed beta-propeller, TolB-like PF550_13390 IPR012938 Glucose/Sorbosone dehydrogenase PF550_13390 IPR011041 Soluble quinoprotein glucose/sorbosone dehydrogenase PF550_13400 IPR000620 EamA domain PF550_13405 IPR015942 Asp/Glu/hydantoin racemase PF550_13405 IPR001920 Asp/Glu racemase PF550_13405 IPR018187 Asp/Glu racemase, active site 1 PF550_13405 IPR033134 Asp/Glu racemase, active site 2 PF550_13405 IPR004380 Aspartate racemase PF550_13415 IPR003399 Mce/MlaD PF550_13420 IPR005219 Intermembrane transport protein PqiA-like, Enterobacteria-type PF550_13420 IPR007498 Intermembrane transport protein PqiA-like PF550_13450 IPR000086 NUDIX hydrolase domain PF550_13450 IPR015797 NUDIX hydrolase-like domain superfamily PF550_13455 IPR020846 Major facilitator superfamily domain PF550_13455 IPR005828 Major facilitator, sugar transporter-like PF550_13455 IPR036292 Proline/betaine transporter ProP, C-terminal PF550_13455 IPR015041 Osmosensory transporter coiled coil PF550_13455 IPR005829 Sugar transporter, conserved site PF550_13455 IPR036259 MFS transporter superfamily PF550_13455 IPR004736 MFS transporter, metabolite:H symporter PF550_13485 IPR005119 LysR, substrate-binding PF550_13485 IPR000847 Transcription regulator HTH, LysR PF550_13485 IPR036390 Winged helix DNA-binding domain superfamily PF550_13485 IPR036388 Winged helix-like DNA-binding domain superfamily PF550_13525 IPR024973 ESPR domain PF550_13525 IPR012334 Pectin lyase fold PF550_13525 IPR025157 Hemagglutinin repeat PF550_13525 IPR008638 Filamentous haemagglutinin, N-terminal PF550_13525 IPR010069 Filamentous haemagglutinin, 20-residue x2 repeat PF550_13525 IPR006914 VENN motif-containing domain PF550_13525 IPR010069 Filamentous haemagglutinin, 20-residue x2 repeat PF550_13525 IPR008638 Filamentous haemagglutinin, N-terminal PF550_13525 IPR025157 Hemagglutinin repeat PF550_13525 IPR012334 Pectin lyase fold PF550_13525 IPR011050 Pectin lyase fold/virulence factor PF550_13525 IPR011050 Pectin lyase fold/virulence factor PF550_13525 IPR024973 ESPR domain PF550_13525 IPR006914 VENN motif-containing domain PF550_13530 IPR005565 Haemolysin activator HlyB, C-terminal PF550_13530 IPR013686 Polypeptide-transport-associated, ShlB-type PF550_13530 IPR034746 POTRA domain PF550_13530 IPR035251 ShlB, POTRA domain PF550_13530 IPR027282 Two partner secretion pathway transporter PF550_13555 IPR017441 Protein kinase, ATP binding site PF550_13555 IPR008271 Serine/threonine-protein kinase, active site PF550_13555 IPR000719 Protein kinase domain PF550_13555 IPR005543 PASTA domain PF550_13555 IPR011009 Protein kinase-like domain superfamily PF550_13575 IPR017860 Peptidase M22, conserved site PF550_13575 IPR022450 tRNA N6-adenosine threonylcarbamoyltransferase, TsaD PF550_13575 IPR000905 Gcp-like domain PF550_13575 IPR017861 Kae1/TsaD family PF550_13580 IPR001911 Ribosomal protein S21 PF550_13580 IPR018278 Ribosomal protein S21, conserved site PF550_13580 IPR038380 Ribosomal protein S21 superfamily PF550_13585 IPR003789 Aspartyl/glutamyl-tRNA amidotransferase subunit B-like PF550_13585 IPR023168 Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase, C-terminal, domain 2 PF550_13585 IPR019004 Uncharacterised protein YqeY/Aim41 PF550_13585 IPR042184 YqeY/Aim41, N-terminal domain PF550_13590 IPR001915 Peptidase M48 PF550_13590 IPR030873 Beta-barrel assembly-enhancing protease PF550_13590 IPR011990 Tetratricopeptide-like helical domain superfamily PF550_13595 IPR036291 NAD(P)-binding domain superfamily PF550_13595 IPR023756 Glyoxylate/hydroxypyruvate reductase B PF550_13595 IPR006140 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain PF550_13595 IPR006139 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain PF550_13595 IPR029753 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain conserved site PF550_13610 IPR035584 Amidophosphoribosyltransferase, N-terminal PF550_13610 IPR005854 Amidophosphoribosyltransferase PF550_13610 IPR000836 Phosphoribosyltransferase domain PF550_13610 IPR029057 Phosphoribosyltransferase-like PF550_13610 IPR017932 Glutamine amidotransferase type 2 domain PF550_13610 IPR029055 Nucleophile aminohydrolases, N-terminal PF550_13615 IPR003825 Colicin V production, CvpA PF550_13620 IPR001295 Dihydroorotate dehydrogenase, conserved site PF550_13620 IPR005719 Dihydroorotate dehydrogenase, class 2 PF550_13620 IPR012135 Dihydroorotate dehydrogenase, class 1/ 2 PF550_13620 IPR013785 Aldolase-type TIM barrel PF550_13620 IPR005720 Dihydroorotate dehydrogenase domain PF550_13640 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily PF550_13640 IPR013328 6-phosphogluconate dehydrogenase, domain 2 PF550_13640 IPR006168 Glycerol-3-phosphate dehydrogenase, NAD-dependent PF550_13640 IPR006109 Glycerol-3-phosphate dehydrogenase, NAD-dependent, C-terminal PF550_13640 IPR011128 Glycerol-3-phosphate dehydrogenase, NAD-dependent, N-terminal PF550_13640 IPR036291 NAD(P)-binding domain superfamily PF550_13645 IPR029479 Nitroreductase PF550_13645 IPR000415 Nitroreductase-like PF550_13645 IPR026021 Putative NAD(P)H nitroreductase YdjA-like PF550_13655 IPR014014 RNA helicase, DEAD-box type, Q motif PF550_13655 IPR000629 ATP-dependent RNA helicase DEAD-box, conserved site PF550_13655 IPR023554 ATP-dependent RNA helicase RhlB type PF550_13655 IPR027417 P-loop containing nucleoside triphosphate hydrolase PF550_13655 IPR001650 Helicase, C-terminal PF550_13655 IPR014001 Helicase superfamily 1/2, ATP-binding domain PF550_13655 IPR011545 DEAD/DEAH box helicase domain PF550_13660 IPR012156 Cold shock, CspA PF550_13660 IPR011129 Cold shock domain PF550_13660 IPR019844 Cold-shock (CSD) domain PF550_13660 IPR002059 Cold-shock protein, DNA-binding PF550_13660 IPR012340 Nucleic acid-binding, OB-fold PF550_13675 IPR013325 RNA polymerase sigma factor, region 2 PF550_13675 IPR013324 RNA polymerase sigma factor, region 3/4-like PF550_13675 IPR012759 RNA polymerase sigma factor RpoH, proteobacteria PF550_13675 IPR007630 RNA polymerase sigma-70 region 4 PF550_13675 IPR007627 RNA polymerase sigma-70 region 2 PF550_13675 IPR000943 RNA polymerase sigma-70 PF550_13675 IPR014284 RNA polymerase sigma-70 like domain PF550_13675 IPR009042 RNA polymerase sigma-70 region 1.2 PF550_13680 IPR006696 Protein of unknown function DUF423 PF550_13690 IPR013785 Aldolase-type TIM barrel PF550_13690 IPR033983 Thiazole synthase ThiG PF550_13690 IPR008867 Thiazole synthase PF550_13700 IPR005583 Peroxide stress protein YaaA PF550_13710 IPR001279 Metallo-beta-lactamase PF550_13710 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like PF550_13710 IPR013471 Ribonuclease Z/BN PF550_13715 IPR001160 Peptidase M20C, Xaa-His dipeptidase PF550_13715 IPR011650 Peptidase M20, dimerisation domain PF550_13715 IPR002933 Peptidase M20 PF550_13725 IPR001986 Enolpyruvate transferase domain PF550_13725 IPR036968 Enolpyruvate transferase domain superfamily PF550_13725 IPR006264 3-phosphoshikimate 1-carboxyvinyltransferase PF550_13725 IPR023193 3-phosphoshikimate 1-carboxyvinyltransferase, conserved site PF550_13725 IPR013792 RNA 3'-terminal phosphate cyclase/enolpyruvate transferase, alpha/beta PF550_13730 IPR010957 Gamma/beta/epsilon proteobacterial P-protein, chorismate mutase domain PF550_13730 IPR002912 ACT domain PF550_13730 IPR008242 Bifunctional P-protein, chorismate mutase/prephenate dehydratase PF550_13730 IPR036263 Chorismate mutase type II superfamily PF550_13730 IPR036979 Chorismate mutase domain superfamily PF550_13730 IPR002701 Chorismate mutase II, prokaryotic-type PF550_13730 IPR001086 Prephenate dehydratase PF550_13730 IPR018528 Prephenate dehydratase, conserved site PF550_13735 IPR029058 Alpha/Beta hydrolase fold PF550_13735 IPR000801 Putative esterase PF550_13740 IPR006089 Acyl-CoA dehydrogenase, conserved site PF550_13740 IPR006091 Acyl-CoA oxidase/dehydrogenase, central domain PF550_13740 IPR036250 Acyl-CoA dehydrogenase-like, C-terminal PF550_13740 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal PF550_13740 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal PF550_13740 IPR037069 Acyl-CoA dehydrogenase/oxidase, N-terminal domain superfamily PF550_13740 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily PF550_13745 IPR036458 Sodium:dicarboxylate symporter superfamily PF550_13745 IPR018107 Sodium:dicarboxylate symporter, conserved site PF550_13745 IPR001991 Sodium:dicarboxylate symporter PF550_13745 IPR023954 C4-dicarboxylate transport protein PF550_13750 IPR005940 Anthranilate phosphoribosyl transferase PF550_13750 IPR000312 Glycosyl transferase, family 3 PF550_13750 IPR017459 Glycosyl transferase family 3, N-terminal domain PF550_13750 IPR036320 Glycosyl transferase family 3, N-terminal domain superfamily PF550_13750 IPR035902 Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain superfamily PF550_13755 IPR009749 Protein of unknown function DUF1315 PF550_13760 IPR002504 NAD kinase PF550_13760 IPR016064 NAD kinase/diacylglycerol kinase-like domain superfamily PF550_13760 IPR017437 ATP-NAD kinase, PpnK-type, C-terminal PF550_13760 IPR017438 Inorganic polyphosphate/ATP-NAD kinase, N-terminal PF550_13765 IPR012338 Beta-lactamase/transpeptidase-like PF550_13765 IPR001264 Glycosyl transferase, family 51 PF550_13765 IPR023346 Lysozyme-like domain superfamily PF550_13765 IPR011813 Penicillin-binding protein 1B PF550_13765 IPR036950 Penicillin binding protein transglycosylase domain PF550_13765 IPR001460 Penicillin-binding protein, transpeptidase PF550_13765 IPR028166 Bifunctional transglycosylase second domain PF550_13775 IPR003561 Mutator MutT PF550_13775 IPR000086 NUDIX hydrolase domain PF550_13775 IPR020084 NUDIX hydrolase, conserved site PF550_13775 IPR020476 NUDIX hydrolase PF550_13775 IPR015797 NUDIX hydrolase-like domain superfamily PF550_13785 IPR013727 Two-component sensor kinase, N-terminal PF550_13785 IPR003594 Histidine kinase/HSP90-like ATPase PF550_13785 IPR036890 Histidine kinase/HSP90-like ATPase superfamily PF550_13785 IPR005467 Histidine kinase domain PF550_13785 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily PF550_13785 IPR004358 Signal transduction histidine kinase-related protein, C-terminal PF550_13785 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain PF550_13790 IPR036388 Winged helix-like DNA-binding domain superfamily PF550_13790 IPR039420 Transcriptional regulatory protein WalR-like PF550_13790 IPR001789 Signal transduction response regulator, receiver domain PF550_13790 IPR016032 Signal transduction response regulator, C-terminal effector PF550_13790 IPR001867 OmpR/PhoB-type DNA-binding domain PF550_13790 IPR011006 CheY-like superfamily PF550_13820 IPR041369 TrmO, C-terminal PF550_13820 IPR023368 Uncharacterised protein family UPF0066, conserved site PF550_13820 IPR023370 TrmO-like, N-terminal domain PF550_13820 IPR036414 YaeB, N-terminal domain superfamily PF550_13820 IPR040372 YaeB-like PF550_13820 IPR036413 YaeB-like superfamily PF550_13825 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase PF550_13825 IPR017927 FAD-binding domain, ferredoxin reductase-type PF550_13825 IPR001433 Oxidoreductase FAD/NAD(P)-binding PF550_13825 IPR033892 Ferredoxin--NADP reductase, bacteria PF550_13825 IPR039261 Ferredoxin-NADP reductase (FNR), nucleotide-binding domain PF550_13825 IPR017938 Riboflavin synthase-like beta-barrel PF550_13825 IPR008333 Flavoprotein pyridine nucleotide cytochrome reductase-like, FAD-binding domain PF550_13830 IPR003719 Phenazine biosynthesis PhzF protein PF550_13835 IPR000524 Transcription regulator HTH, GntR PF550_13835 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 PF550_13835 IPR015421 Pyridoxal phosphate-dependent transferase, major domain PF550_13835 IPR036388 Winged helix-like DNA-binding domain superfamily PF550_13835 IPR036390 Winged helix DNA-binding domain superfamily PF550_13835 IPR004839 Aminotransferase, class I/classII PF550_13835 IPR015424 Pyridoxal phosphate-dependent transferase PF550_13840 IPR001539 Peptidase U32 PF550_13840 IPR032525 Peptidase family U32, C-terminal PF550_13845 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain PF550_13845 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site PF550_13850 IPR000390 Small multidrug resistance protein family PF550_13855 IPR027417 P-loop containing nucleoside triphosphate hydrolase PF550_13855 IPR003593 AAA+ ATPase domain PF550_13855 IPR030679 ABC-type amino acid transport system, ATPase component, HisP-type PF550_13855 IPR003439 ABC transporter-like PF550_13855 IPR017871 ABC transporter, conserved site PF550_13860 IPR010065 Amino acid ABC transporter, permease protein, 3-TM domain PF550_13860 IPR035906 MetI-like superfamily PF550_13860 IPR000515 ABC transporter type 1, transmembrane domain MetI-like PF550_13865 IPR000515 ABC transporter type 1, transmembrane domain MetI-like PF550_13865 IPR035906 MetI-like superfamily PF550_13865 IPR030199 Histidine transport system permease protein HisQ PF550_13865 IPR010065 Amino acid ABC transporter, permease protein, 3-TM domain PF550_13870 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF PF550_13870 IPR018313 Solute-binding protein family 3, conserved site PF550_13870 IPR005768 Specific amino acids and opine-binding periplasmic protein, ABC transporter PF550_13875 IPR036390 Winged helix DNA-binding domain superfamily PF550_13875 IPR036388 Winged helix-like DNA-binding domain superfamily PF550_13875 IPR000847 Transcription regulator HTH, LysR PF550_13875 IPR005119 LysR, substrate-binding PF550_13880 IPR006143 RND efflux pump, membrane fusion protein PF550_13880 IPR022824 Multidrug resistance protein MdtA PF550_13880 IPR039562 Membrane fusion protein, biotin-lipoyl like domain PF550_13885 IPR004764 Hydrophobe/amphiphile efflux-1 HAE1 PF550_13885 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains PF550_13885 IPR001036 Acriflavin resistance protein PF550_13890 IPR010131 RND efflux system, outer membrane lipoprotein, NodT PF550_13890 IPR003423 Outer membrane efflux protein PF550_13895 IPR015424 Pyridoxal phosphate-dependent transferase PF550_13895 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 PF550_13895 IPR015421 Pyridoxal phosphate-dependent transferase, major domain PF550_13895 IPR001085 Serine hydroxymethyltransferase PF550_13895 IPR019798 Serine hydroxymethyltransferase, pyridoxal phosphate binding site PF550_13895 IPR039429 Serine hydroxymethyltransferase-like domain PF550_13925 IPR027417 P-loop containing nucleoside triphosphate hydrolase PF550_13925 IPR017871 ABC transporter, conserved site PF550_13925 IPR003439 ABC transporter-like PF550_13925 IPR003593 AAA+ ATPase domain PF550_13930 IPR013525 ABC-2 type transporter PF550_13930 IPR000412 ABC-2 transporter PF550_13935 IPR029139 NADPH-dependent 7-cyano-7-deazaguanine reductase, N-terminal PF550_13935 IPR016428 NADPH-dependent 7-cyano-7-deazaguanine reductase, QueF type 2 PF550_13935 IPR029500 NADPH-dependent 7-cyano-7-deazaguanine reductase QueF PF550_13945 IPR018365 Cell cycle, FtsW / RodA / SpoVE, conserved site PF550_13945 IPR001182 Probable peptidoglycan glycosyltransferase FtsW/RodA PF550_13945 IPR011923 Probable peptidoglycan glycosyltransferase RodA/MrdB PF550_13950 IPR023346 Lysozyme-like domain superfamily PF550_13950 IPR011757 Lytic transglycosylase MltB PF550_13950 IPR031304 Transglycosylase SLT domain 2 PF550_13955 IPR007730 Sporulation-like domain PF550_13955 IPR012997 Rare lipoprotein A PF550_13955 IPR034718 Endolytic peptidoglycan transglycosylase RlpA PF550_13955 IPR009009 RlpA-like protein, double-psi beta-barrel domain PF550_13955 IPR036908 RlpA-like domain superfamily PF550_13975 IPR009057 Homeobox-like domain superfamily PF550_13975 IPR018060 DNA binding HTH domain, AraC-type PF550_13975 IPR018062 HTH domain AraC-type, conserved site PF550_13975 IPR011051 RmlC-like cupin domain superfamily PF550_13985 IPR009060 UBA-like superfamily PF550_13985 IPR036402 Elongation factor Ts, dimerisation domain superfamily PF550_13985 IPR018101 Translation elongation factor Ts, conserved site PF550_13985 IPR014039 Translation elongation factor EFTs/EF1B, dimerisation PF550_13985 IPR001816 Translation elongation factor EFTs/EF1B PF550_13990 IPR005706 Ribosomal protein S2, bacteria/mitochondria/plastid PF550_13990 IPR018130 Ribosomal protein S2, conserved site PF550_13990 IPR023591 Ribosomal protein S2, flavodoxin-like domain superfamily PF550_13990 IPR001865 Ribosomal protein S2 PF550_13995 IPR001714 Peptidase M24, methionine aminopeptidase PF550_13995 IPR002467 Peptidase M24A, methionine aminopeptidase, subfamily 1 PF550_13995 IPR036005 Creatinase/aminopeptidase-like PF550_13995 IPR000994 Peptidase M24 PF550_14005 IPR011701 Major facilitator superfamily PF550_14005 IPR020846 Major facilitator superfamily domain PF550_14005 IPR036259 MFS transporter superfamily PF550_14005 IPR004737 Nitrate transporter PF550_14015 IPR016156 FAD/NAD-linked reductase, dimerisation domain superfamily PF550_14015 IPR001100 Pyridine nucleotide-disulphide oxidoreductase, class I PF550_14015 IPR004099 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain PF550_14015 IPR022962 Soluble pyridine nucleotide transhydrogenase PF550_14015 IPR023753 FAD/NAD(P)-binding domain PF550_14015 IPR036188 FAD/NAD(P)-binding domain superfamily PF550_14020 IPR007197 Radical SAM PF550_14020 IPR003698 Lipoyl synthase PF550_14020 IPR013785 Aldolase-type TIM barrel PF550_14020 IPR006638 Elp3/MiaB/NifB PF550_14025 IPR015396 Acyl-CoA dehydrogenase, C-termina, bacterial type PF550_14025 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily PF550_14025 IPR037069 Acyl-CoA dehydrogenase/oxidase, N-terminal domain superfamily PF550_14025 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal PF550_14025 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal PF550_14025 IPR036250 Acyl-CoA dehydrogenase-like, C-terminal PF550_14040 IPR020082 S-adenosyl-L-homocysteine hydrolase, conserved site PF550_14040 IPR042172 Adenosylhomocysteinase-like superfamily PF550_14040 IPR036291 NAD(P)-binding domain superfamily PF550_14040 IPR015878 S-adenosyl-L-homocysteine hydrolase, NAD binding domain PF550_14040 IPR000043 Adenosylhomocysteinase-like PF550_14045 IPR004620 5,10-methylenetetrahydrofolate reductase PF550_14045 IPR003171 Methylenetetrahydrofolate reductase PF550_14045 IPR029041 FAD-linked oxidoreductase-like PF550_14050 IPR029026 tRNA (guanine-N1-)-methyltransferase, N-terminal PF550_14050 IPR006700 Ribosomal RNA small subunit methyltransferase E PF550_14050 IPR015947 PUA-like superfamily PF550_14050 IPR029028 Alpha/beta knot methyltransferases PF550_14055 IPR035919 EAL domain superfamily PF550_14055 IPR029787 Nucleotide cyclase PF550_14055 IPR001633 EAL domain PF550_14055 IPR000160 GGDEF domain PF550_14055 IPR005330 MHYT domain PF550_14060 IPR002505 Phosphate acetyl/butaryl transferase PF550_14060 IPR042112 Phosphate acetyltransferase, domain 2 PF550_14060 IPR042113 Phosphate acetyltransferase, domain 1 PF550_14060 IPR036291 NAD(P)-binding domain superfamily PF550_14060 IPR012188 NAD(P)-dependent malic enzyme PF550_14060 IPR012302 Malic enzyme, NAD-binding PF550_14060 IPR015884 Malic enzyme, conserved site PF550_14060 IPR037062 Malic enzyme, N-terminal domain superfamily PF550_14060 IPR012301 Malic enzyme, N-terminal domain PF550_14065 IPR012006 tRNA nucleotidyltransferase, proteobacteria PF550_14065 IPR002646 Poly A polymerase, head domain PF550_14065 IPR032828 tRNA nucleotidyltransferase/poly(A) polymerase, RNA and SrmB- binding domain PF550_14065 IPR003607 HD/PDEase domain PF550_14070 IPR036034 PDZ superfamily PF550_14070 IPR009003 Peptidase S1, PA clan PF550_14070 IPR001478 PDZ domain PF550_14070 IPR011782 Peptidase S1C, Do PF550_14070 IPR001940 Peptidase S1C PF550_14075 IPR002678 GTP cyclohydrolase 1 type 2/Nif3 PF550_14075 IPR036069 GTP cyclohydrolase 1 type 2/Nif3 superfamily PF550_14080 IPR001189 Manganese/iron superoxide dismutase PF550_14080 IPR019833 Manganese/iron superoxide dismutase, binding site PF550_14080 IPR019832 Manganese/iron superoxide dismutase, C-terminal PF550_14080 IPR019831 Manganese/iron superoxide dismutase, N-terminal PF550_14080 IPR036324 Manganese/iron superoxide dismutase, N-terminal domain superfamily PF550_14080 IPR036314 Manganese/iron superoxide dismutase, C-terminal domain superfamily PF550_14115 IPR006370 4-hydroxybenzoate polyprenyltransferase-like PF550_14115 IPR039653 Prenyltransferase PF550_14115 IPR000537 UbiA prenyltransferase family PF550_14120 IPR007440 Chorismate--pyruvate lyase PF550_14120 IPR028978 Chorismate pyruvate-lyase/UbiC transcription regulator-associated domain superfamily PF550_14125 IPR008147 Glutamine synthetase, beta-Grasp domain PF550_14125 IPR027302 Glutamine synthetase, N-terminal conserved site PF550_14125 IPR036651 Glutamine synthetase, N-terminal domain superfamily PF550_14125 IPR004809 Glutamine synthetase type I PF550_14125 IPR027303 Glutamine synthetase, glycine-rich site PF550_14125 IPR008146 Glutamine synthetase, catalytic domain PF550_14125 IPR014746 Glutamine synthetase/guanido kinase, catalytic domain PF550_14125 IPR001637 Glutamine synthetase class-I, adenylation site PF550_14130 IPR020846 Major facilitator superfamily domain PF550_14130 IPR036259 MFS transporter superfamily PF550_14130 IPR000109 Proton-dependent oligopeptide transporter family PF550_14130 IPR018456 PTR2 family proton/oligopeptide symporter, conserved site PF550_14130 IPR005279 Dipeptide/tripeptide permease PF550_14140 IPR013762 Integrase-like, catalytic domain superfamily PF550_14140 IPR011010 DNA breaking-rejoining enzyme, catalytic core PF550_14140 IPR002104 Integrase, catalytic domain PF550_14140 IPR038488 Integrase, DNA-binding domain superfamily PF550_14140 IPR025166 Integrase, DNA-binding domain PF550_14140 IPR010998 Integrase/recombinase, N-terminal PF550_14205 IPR013321 Arc-type ribbon-helix-helix PF550_14205 IPR005569 Arc-like DNA binding domain PF550_14205 IPR010985 Ribbon-helix-helix PF550_14210 IPR009057 Homeobox-like domain superfamily PF550_14220 IPR024474 Zinc-finger binding domain of transposase IS66 PF550_14220 IPR039552 Transposase IS66, C-terminal PF550_14220 IPR004291 Transposase, IS66 PF550_14220 IPR024463 Transposase TnpC, homeodomain PF550_14235 IPR010921 Trp repressor/replication initiator PF550_14235 IPR003593 AAA+ ATPase domain PF550_14235 IPR001957 Chromosomal replication control, initiator DnaA PF550_14235 IPR020591 Chromosomal replication control, initiator DnaA-like PF550_14235 IPR018312 Chromosomal replication control, initiator DnaA, conserved site PF550_14235 IPR013317 Chromosomal replication initiator protein DnaA PF550_14235 IPR013159 Chromosomal replication initiator, DnaA C-terminal PF550_14235 IPR024633 DnaA N-terminal domain PF550_14235 IPR038454 DnaA, N-terminal domain superfamily PF550_14235 IPR027417 P-loop containing nucleoside triphosphate hydrolase PF550_14240 IPR002549 Transmembrane protein TqsA-like PF550_14245 IPR016188 PurM-like, N-terminal domain PF550_14245 IPR036676 PurM-like, C-terminal domain superfamily PF550_14245 IPR010918 PurM-like, C-terminal domain PF550_14245 IPR004733 Phosphoribosylformylglycinamidine cyclo-ligase PF550_14245 IPR036921 PurM-like, N-terminal domain superfamily PF550_14250 IPR001555 Phosphoribosylglycinamide formyltransferase, active site PF550_14250 IPR036477 Formyl transferase, N-terminal domain superfamily PF550_14250 IPR002376 Formyl transferase, N-terminal PF550_14250 IPR004607 Phosphoribosylglycinamide formyltransferase PF550_14255 IPR029058 Alpha/Beta hydrolase fold PF550_14255 IPR000073 Alpha/beta hydrolase fold-1 PF550_14260 IPR002142 Peptidase S49 PF550_14260 IPR004670 Na+/H+ antiporter NhaA PF550_14260 IPR023171 Na/H antiporter domain superfamily PF550_14260 IPR029045 ClpP/crotonase-like domain superfamily PF550_14270 IPR025405 Domain of unknown function DUF4131 PF550_14270 IPR004477 ComEC/Rec2-related protein PF550_14270 IPR004797 Competence protein ComEC/Rec2 PF550_14270 IPR035681 ComA-like, MBL domain PF550_14270 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like PF550_14270 IPR001279 Metallo-beta-lactamase PF550_14275 IPR015854 ABC transporter, lipoprotein release, LolD PF550_14275 IPR017871 ABC transporter, conserved site PF550_14275 IPR003439 ABC transporter-like PF550_14275 IPR003593 AAA+ ATPase domain PF550_14275 IPR027417 P-loop containing nucleoside triphosphate hydrolase PF550_14280 IPR003838 ABC transporter permease protein domain PF550_14280 IPR025857 MacB-like periplasmic core domain PF550_14280 IPR011925 Lipoprotein-releasing system transmembrane protein LolC/E PF550_14290 IPR003791 Protein of unknown function UPF0178 PF550_14305 IPR015421 Pyridoxal phosphate-dependent transferase, major domain PF550_14305 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 PF550_14305 IPR015424 Pyridoxal phosphate-dependent transferase PF550_14305 IPR022278 Phosphoserine aminotransferase PF550_14305 IPR000192 Aminotransferase class V domain PF550_14305 IPR020578 Aminotransferase class-V, pyridoxal-phosphate binding site PF550_14315 IPR039562 Membrane fusion protein, biotin-lipoyl like domain PF550_14335 IPR029044 Nucleotide-diphospho-sugar transferases PF550_14335 IPR001173 Glycosyltransferase 2-like PF550_14350 IPR005743 DNA gyrase, subunit A PF550_14350 IPR006691 DNA gyrase/topoisomerase IV, subunit A, C-terminal repeat PF550_14350 IPR035516 DNA gyrase/topoisomerase IV, subunit A, C-terminal PF550_14350 IPR013760 DNA topoisomerase, type IIA-like domain superfamily PF550_14350 IPR002205 DNA topoisomerase, type IIA, subunit A/C-terminal PF550_14350 IPR013758 DNA topoisomerase, type IIA, subunit A/ C-terminal, alpha-beta PF550_14350 IPR013757 Type IIA DNA topoisomerase subunit A, alpha-helical domain superfamily PF550_14355 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold PF550_14355 IPR029035 DHS-like NAD/FAD-binding domain superfamily PF550_14355 IPR014730 Electron transfer flavoprotein, alpha/beta-subunit, N-terminal PF550_14355 IPR001308 Electron transfer flavoprotein alpha subunit/FixB PF550_14355 IPR033947 Electron transfer flavoprotein, alpha subunit, N-terminal PF550_14355 IPR014731 Electron transfer flavoprotein, alpha subunit, C-terminal PF550_14355 IPR018206 Electron transfer flavoprotein subunit alpha, conserved site PF550_14360 IPR000049 Electron transfer flavoprotein, beta-subunit, conserved site PF550_14360 IPR014730 Electron transfer flavoprotein, alpha/beta-subunit, N-terminal PF550_14360 IPR012255 Electron transfer flavoprotein, beta subunit PF550_14360 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold PF550_14360 IPR033948 Electron transfer flavoprotein, beta subunit, N-terminal PF550_14365 IPR002104 Integrase, catalytic domain PF550_14365 IPR013762 Integrase-like, catalytic domain superfamily PF550_14365 IPR011010 DNA breaking-rejoining enzyme, catalytic core PF550_14365 IPR004107 Integrase, SAM-like, N-terminal PF550_14365 IPR011931 Tyrosine recombinase XerC PF550_14365 IPR023009 Tyrosine recombinase XerC/XerD PF550_14365 IPR010998 Integrase/recombinase, N-terminal PF550_14370 IPR001123 Amino acid exporter protein, LeuE-type PF550_14370 IPR004778 Homoserine/Threonine efflux protein PF550_14375 IPR018510 Diaminopimelate epimerase, active site PF550_14375 IPR001653 Diaminopimelate epimerase, DapF PF550_14380 IPR029066 PLP-binding barrel PF550_14380 IPR022657 Orn/DAP/Arg decarboxylase 2, conserved site PF550_14380 IPR022653 Orn/DAP/Arg decarboxylase 2, pyridoxal-phosphate binding site PF550_14380 IPR009006 Alanine racemase/group IV decarboxylase, C-terminal PF550_14380 IPR002986 Diaminopimelate decarboxylase, LysA PF550_14380 IPR022644 Orn/DAP/Arg decarboxylase 2, N-terminal PF550_14380 IPR022643 Orn/DAP/Arg decarboxylase 2, C-terminal PF550_14380 IPR000183 Ornithine/DAP/Arg decarboxylase PF550_14390 IPR004841 Amino acid permease/ SLC12A domain PF550_14390 IPR004840 Amino acid permease, conserved site PF550_14395 IPR020568 Ribosomal protein S5 domain 2-type fold PF550_14395 IPR020588 DNA recombination and repair protein RecA-like, ATP-binding domain PF550_14395 IPR027417 P-loop containing nucleoside triphosphate hydrolase PF550_14395 IPR004504 DNA repair protein RadA PF550_14395 IPR003593 AAA+ ATPase domain PF550_14395 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup PF550_14395 IPR041166 LapB, rubredoxin metal binding domain PF550_14405 IPR004364 Aminoacyl-tRNA synthetase, class II (D/K/N) PF550_14405 IPR004525 Elongation factor P--(R)-beta-lysine ligase PF550_14405 IPR018149 Lysyl-tRNA synthetase, class II, C-terminal PF550_14405 IPR006195 Aminoacyl-tRNA synthetase, class II PF550_14410 IPR006139 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain PF550_14410 IPR029752 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain conserved site 1 PF550_14410 IPR006140 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain PF550_14410 IPR020921 Erythronate-4-phosphate dehydrogenase PF550_14410 IPR024531 Erythronate-4-phosphate dehydrogenase, dimerisation domain PF550_14410 IPR036291 NAD(P)-binding domain superfamily PF550_14410 IPR038251 PdxB, dimerisation domain superfamily PF550_14415 IPR010652 Domain of unknown function DUF1232 PF550_14420 IPR016193 Cytidine deaminase-like PF550_14420 IPR003786 Sulfur carrier protein FdhD PF550_14425 IPR041953 YdeP, molybdopterin-binding oxidoreductase-like domain PF550_14425 IPR009010 Aspartate decarboxylase-like domain superfamily PF550_14425 IPR037951 YdeP-like, MopB domain PF550_14425 IPR006656 Molybdopterin oxidoreductase PF550_14425 IPR010046 Oxidoreductase alpha (molybdopterin) subunit PF550_14430 IPR018197 Glycerate kinase, restriction-enzyme-like fold PF550_14430 IPR036129 Glycerate kinase superfamily PF550_14430 IPR018193 Glycerate kinase, flavodoxin-like fold PF550_14430 IPR004381 Glycerate kinase PF550_14440 IPR011284 3-oxoacyl-(acyl-carrier-protein) reductase PF550_14440 IPR036291 NAD(P)-binding domain superfamily PF550_14440 IPR020904 Short-chain dehydrogenase/reductase, conserved site PF550_14440 IPR002347 Short-chain dehydrogenase/reductase SDR PF550_14445 IPR029479 Nitroreductase PF550_14445 IPR000415 Nitroreductase-like PF550_14465 IPR018654 Putative toxin of bacterial toxin-antitoxin pair PF550_14490 IPR006358 Transcription elongation factor GreB PF550_14490 IPR022691 Transcription elongation factor, GreA/GreB, N-terminal PF550_14490 IPR036953 Transcription elongation factor GreA/GreB, C-terminal domain superfamily PF550_14490 IPR018151 Transcription elongation factor, GreA/GreB, conserved site PF550_14490 IPR028624 Transcription elongation factor GreA/GreB PF550_14490 IPR001437 Transcription elongation factor, GreA/GreB, C-terminal PF550_14490 IPR023459 Transcription elongation factor GreA/GreB family PF550_14490 IPR036805 Transcription elongation factor, GreA/GreB, N-terminal domain superfamily PF550_14495 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF PF550_14495 IPR008258 Transglycosylase SLT domain 1 PF550_14495 IPR000189 Prokaryotic transglycosylase, active site PF550_14495 IPR023703 Membrane-bound lytic murein transglycosylase F PF550_14495 IPR023346 Lysozyme-like domain superfamily PF550_14505 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold PF550_14505 IPR011063 tRNA(Ile)-lysidine/2-thiocytidine synthase, N-terminal PF550_14505 IPR012089 tRNA-cytidine(32) 2-sulfurtransferase PF550_14505 IPR035107 tRNA thiolation protein, TtcA/Ctu1 type PF550_14510 IPR023346 Lysozyme-like domain superfamily PF550_14510 IPR000189 Prokaryotic transglycosylase, active site PF550_14510 IPR008258 Transglycosylase SLT domain 1 PF550_14515 IPR022919 Peptidase M48, protease HtpX, putative PF550_14515 IPR001915 Peptidase M48 PF550_14525 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains PF550_14525 IPR001036 Acriflavin resistance protein PF550_14525 IPR004764 Hydrophobe/amphiphile efflux-1 HAE1 PF550_14530 IPR017946 PLC-like phosphodiesterase, TIM beta/alpha-barrel domain superfamily PF550_14530 IPR030395 Glycerophosphodiester phosphodiesterase domain PF550_14535 IPR001279 Metallo-beta-lactamase PF550_14535 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like PF550_14540 IPR000829 DAGK family PF550_14540 IPR033718 Diacylglycerol kinase, prokaryotic PF550_14540 IPR036945 Diacylglycerol kinase (DAGK) superfamily PF550_14545 IPR018370 Chaperonin Cpn60, conserved site PF550_14545 IPR001844 Chaperonin Cpn60 PF550_14545 IPR002423 Chaperonin Cpn60/TCP-1 family PF550_14545 IPR027409 GroEL-like apical domain superfamily PF550_14545 IPR027413 GroEL-like equatorial domain superfamily PF550_14545 IPR027410 TCP-1-like chaperonin intermediate domain superfamily PF550_14550 IPR020818 GroES chaperonin family PF550_14550 IPR037124 GroES chaperonin superfamily PF550_14550 IPR018369 Chaperonin GroES, conserved site PF550_14550 IPR011032 GroES-like superfamily PF550_14560 IPR026575 3,5-cyclic adenosine monophosphate phosphodiesterase CpdA PF550_14560 IPR042281 GpdQ, beta-strand dimerisation domain PF550_14560 IPR004843 Calcineurin-like phosphoesterase domain, ApaH type PF550_14560 IPR042283 GpdQ, catalytic alpha/beta sandwich domain PF550_14565 IPR017438 Inorganic polyphosphate/ATP-NAD kinase, N-terminal PF550_14565 IPR016064 NAD kinase/diacylglycerol kinase-like domain superfamily PF550_14565 IPR001206 Diacylglycerol kinase, catalytic domain PF550_14570 IPR018091 Phosphoenolpyruvate carboxykinase, GTP-utilising, conserved site PF550_14570 IPR013035 Phosphoenolpyruvate carboxykinase, C-terminal PF550_14570 IPR035077 Phosphoenolpyruvate carboxykinase, C-terminal P-loop domain PF550_14570 IPR008210 Phosphoenolpyruvate carboxykinase, N-terminal PF550_14570 IPR008209 Phosphoenolpyruvate carboxykinase, GTP-utilising PF550_14570 IPR035078 Phosphoenolpyruvate carboxykinase, GTP-utilising, N-terminal PF550_14575 IPR031656 Alpha-glycerophosphate oxidase, C-terminal PF550_14575 IPR038299 Alpha-glycerophosphate oxidase, C-terminal domain superfamily PF550_14575 IPR006076 FAD dependent oxidoreductase PF550_14575 IPR036188 FAD/NAD(P)-binding domain superfamily PF550_14575 IPR000447 FAD-dependent glycerol-3-phosphate dehydrogenase PF550_14580 IPR000577 Carbohydrate kinase, FGGY PF550_14580 IPR018485 Carbohydrate kinase, FGGY, C-terminal PF550_14580 IPR018483 Carbohydrate kinase, FGGY, conserved site PF550_14580 IPR018484 Carbohydrate kinase, FGGY, N-terminal PF550_14580 IPR005999 Glycerol kinase PF550_14585 IPR036259 MFS transporter superfamily PF550_14585 IPR005829 Sugar transporter, conserved site PF550_14585 IPR004736 MFS transporter, metabolite:H symporter PF550_14585 IPR020846 Major facilitator superfamily domain PF550_14585 IPR005828 Major facilitator, sugar transporter-like PF550_14595 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase PF550_14595 IPR004498 Ribosomal protein L11 methyltransferase PF550_14600 IPR020631 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain PF550_14600 IPR036291 NAD(P)-binding domain superfamily PF550_14600 IPR020630 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain PF550_14600 IPR000672 Tetrahydrofolate dehydrogenase/cyclohydrolase PF550_14600 IPR020867 Tetrahydrofolate dehydrogenase/cyclohydrolase, conserved site PF550_14615 IPR018946 Alkaline phosphatase D-related PF550_14615 IPR038607 PhoD-like superfamily PF550_14615 IPR032093 Phospholipase D, N-terminal PF550_14615 IPR008963 Purple acid phosphatase-like, N-terminal PF550_14615 IPR006311 Twin-arginine translocation pathway, signal sequence PF550_14635 IPR000489 Pterin-binding domain PF550_14635 IPR006390 Dihydropteroate synthase PF550_14635 IPR011005 Dihydropteroate synthase-like PF550_14640 IPR037219 Peptidase M41-like PF550_14640 IPR011546 Peptidase M41, FtsH extracellular PF550_14640 IPR027417 P-loop containing nucleoside triphosphate hydrolase PF550_14640 IPR003960 ATPase, AAA-type, conserved site PF550_14640 IPR003959 ATPase, AAA-type, core PF550_14640 IPR041569 AAA ATPase, AAA+ lid domain PF550_14640 IPR003593 AAA+ ATPase domain PF550_14640 IPR000642 Peptidase M41 PF550_14640 IPR005936 Peptidase, FtsH PF550_14645 IPR015507 Ribosomal RNA large subunit methyltransferase E PF550_14645 IPR002877 Ribosomal RNA methyltransferase FtsJ domain PF550_14645 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase PF550_14650 IPR017924 RNA-binding protein YhbY PF550_14650 IPR001890 RNA-binding, CRM domain PF550_14650 IPR035920 YhbY-like superfamily PF550_14665 IPR029062 Class I glutamine amidotransferase-like PF550_14665 IPR006274 Carbamoyl-phosphate synthase, small subunit PF550_14665 IPR036480 Carbamoyl-phosphate synthase small subunit, N-terminal domain superfamily PF550_14665 IPR017926 Glutamine amidotransferase PF550_14665 IPR035686 Carbamoyl-phosphate synthase small subunit, GATase1 domain PF550_14665 IPR002474 Carbamoyl-phosphate synthase small subunit, N-terminal domain PF550_14670 IPR036897 Carbamoyl-phosphate synthetase, large subunit oligomerisation domain superfamily PF550_14670 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain PF550_14670 IPR005483 Carbamoyl-phosphate synthase large subunit, CPSase domain PF550_14670 IPR011607 Methylglyoxal synthase-like domain PF550_14670 IPR036914 Methylglyoxal synthase-like domain superfamily PF550_14670 IPR033937 Carbamoyl-phosphate synthase large chain, methylglyoxal synthase-like domain PF550_14670 IPR016185 Pre-ATP-grasp domain superfamily PF550_14670 IPR011761 ATP-grasp fold PF550_14670 IPR006275 Carbamoyl-phosphate synthase, large subunit PF550_14670 IPR005480 Carbamoyl-phosphate synthetase, large subunit oligomerisation domain PF550_14675 IPR036805 Transcription elongation factor, GreA/GreB, N-terminal domain superfamily PF550_14675 IPR022691 Transcription elongation factor, GreA/GreB, N-terminal PF550_14675 IPR001437 Transcription elongation factor, GreA/GreB, C-terminal PF550_14675 IPR006359 Transcription elongation factor GreA PF550_14675 IPR018151 Transcription elongation factor, GreA/GreB, conserved site PF550_14675 IPR036953 Transcription elongation factor GreA/GreB, C-terminal domain superfamily PF550_14675 IPR023459 Transcription elongation factor GreA/GreB family PF550_14675 IPR028624 Transcription elongation factor GreA/GreB PF550_14680 IPR011004 Trimeric LpxA-like superfamily PF550_14680 IPR018357 Hexapeptide transferase, conserved site PF550_14680 IPR001451 Hexapeptide repeat PF550_14685 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold PF550_14685 IPR006015 Universal stress protein A family PF550_14685 IPR006016 UspA PF550_14690 IPR014048 Methylated-DNA-[protein]-cysteine S-methyltransferase, DNA binding PF550_14690 IPR036388 Winged helix-like DNA-binding domain superfamily PF550_14690 IPR036217 Methylated DNA-protein cysteine methyltransferase, DNA binding domain PF550_14700 IPR019079 Capsule synthesis protein, CapA PF550_14700 IPR029052 Metallo-dependent phosphatase-like PF550_14715 IPR006153 Cation/H+ exchanger PF550_14715 IPR018422 Cation/H+ exchanger, CPA1 family PF550_14715 IPR038770 Sodium/solute symporter superfamily PF550_14720 IPR007343 Uncharacterised protein family, zinc metallopeptidase putative PF550_14725 IPR008526 Inner membrane protein YedI PF550_14730 IPR024109 Tryptophan-tRNA ligase, bacterial-type PF550_14730 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold PF550_14730 IPR002306 Tryptophan-tRNA ligase PF550_14730 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site PF550_14730 IPR002305 Aminoacyl-tRNA synthetase, class Ic PF550_14735 IPR017440 ATP-citrate lyase/succinyl-CoA ligase, active site PF550_14735 IPR033847 ATP-citrate lyase/succinyl-CoA ligase, conserved site PF550_14735 IPR003781 CoA-binding PF550_14735 IPR005810 Succinyl-CoA ligase, alpha subunit PF550_14735 IPR005811 ATP-citrate lyase/succinyl-CoA ligase PF550_14735 IPR036291 NAD(P)-binding domain superfamily PF550_14735 IPR016102 Succinyl-CoA synthetase-like PF550_14740 IPR017866 Succinyl-CoA synthetase, beta subunit, conserved site PF550_14740 IPR005809 Succinate--CoA synthetase, beta subunit PF550_14740 IPR005811 ATP-citrate lyase/succinyl-CoA ligase PF550_14740 IPR016102 Succinyl-CoA synthetase-like PF550_14740 IPR013650 ATP-grasp fold, succinyl-CoA synthetase-type PF550_14740 IPR011761 ATP-grasp fold PF550_14740 IPR013815 ATP-grasp fold, subdomain 1 PF550_14745 IPR036188 FAD/NAD(P)-binding domain superfamily PF550_14745 IPR023753 FAD/NAD(P)-binding domain PF550_14745 IPR016156 FAD/NAD-linked reductase, dimerisation domain superfamily PF550_14745 IPR006258 Dihydrolipoamide dehydrogenase PF550_14745 IPR001100 Pyridine nucleotide-disulphide oxidoreductase, class I PF550_14745 IPR004099 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain PF550_14745 IPR012999 Pyridine nucleotide-disulphide oxidoreductase, class I, active site PF550_14750 IPR006255 Dihydrolipoamide succinyltransferase PF550_14750 IPR011053 Single hybrid motif PF550_14750 IPR004167 Peripheral subunit-binding domain PF550_14750 IPR036625 E3-binding domain superfamily PF550_14750 IPR000089 Biotin/lipoyl attachment PF550_14750 IPR001078 2-oxoacid dehydrogenase acyltransferase, catalytic domain PF550_14750 IPR003016 2-oxo acid dehydrogenase, lipoyl-binding site PF550_14750 IPR023213 Chloramphenicol acetyltransferase-like domain superfamily PF550_14755 IPR032106 2-oxoglutarate dehydrogenase E1 component, N-terminal domain PF550_14755 IPR011603 2-oxoglutarate dehydrogenase E1 component PF550_14755 IPR001017 Dehydrogenase, E1 component PF550_14755 IPR031717 Multifunctional 2-oxoglutarate metabolism enzyme, C-terminal PF550_14755 IPR042179 Multifunctional 2-oxoglutarate metabolism enzyme, C-terminal domain superfamily PF550_14755 IPR029061 Thiamin diphosphate-binding fold PF550_14755 IPR005475 Transketolase-like, pyrimidine-binding domain PF550_14770 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain PF550_14770 IPR036010 2Fe-2S ferredoxin-like superfamily PF550_14770 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain PF550_14770 IPR012675 Beta-grasp domain superfamily PF550_14770 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site PF550_14770 IPR004489 Succinate dehydrogenase/fumarate reductase iron-sulphur protein PF550_14770 IPR025192 Succinate dehydogenase/fumarate reductase N-terminal PF550_14770 IPR009051 Alpha-helical ferredoxin PF550_14775 IPR003953 FAD-dependent oxidoreductase 2, FAD binding domain PF550_14775 IPR036188 FAD/NAD(P)-binding domain superfamily PF550_14775 IPR003952 Fumarate reductase/succinate dehydrogenase, FAD-binding site PF550_14775 IPR037099 Fumarate reductase/succinate dehydrogenase flavoprotein-like, C-terminal domain superfamily PF550_14775 IPR015939 Fumarate reductase/succinate dehydrogenase flavoprotein-like, C-terminal PF550_14775 IPR027477 Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain superfamily PF550_14775 IPR011281 Succinate dehydrogenase, flavoprotein subunit PF550_14775 IPR014006 Succinate dehydrogenase/fumarate reductase, flavoprotein subunit PF550_14780 IPR000701 Succinate dehydrogenase/fumarate reductase type B, transmembrane subunit PF550_14780 IPR014312 Succinate dehydrogenase, hydrophobic membrane anchor PF550_14780 IPR034804 Fumarate reductase/succinate dehydrogenase, transmembrane subunit PF550_14785 IPR018495 Succinate dehydrogenase, cytochrome b subunit, conserved site PF550_14785 IPR014314 Succinate dehydrogenase, cytochrome b556 subunit PF550_14785 IPR000701 Succinate dehydrogenase/fumarate reductase type B, transmembrane subunit PF550_14785 IPR034804 Fumarate reductase/succinate dehydrogenase, transmembrane subunit PF550_14790 IPR016142 Citrate synthase-like, large alpha subdomain PF550_14790 IPR016143 Citrate synthase-like, small alpha subdomain PF550_14790 IPR002020 Citrate synthase PF550_14790 IPR019810 Citrate synthase active site PF550_14790 IPR024176 Citrate synthase, bacterial-type PF550_14790 IPR036969 Citrate synthase superfamily PF550_14790 IPR010953 Citrate synthase, type I PF550_14800 IPR040503 UPF0176, acylphosphatase-like domain PF550_14800 IPR020936 Uncharacterised protein family UPF0176 PF550_14800 IPR001763 Rhodanese-like domain PF550_14800 IPR036873 Rhodanese-like domain superfamily PF550_14820 IPR036388 Winged helix-like DNA-binding domain superfamily PF550_14820 IPR012760 RNA polymerase sigma factor RpoD, C-terminal PF550_14820 IPR013324 RNA polymerase sigma factor, region 3/4-like PF550_14820 IPR013325 RNA polymerase sigma factor, region 2 PF550_14820 IPR042189 Sigma-70 factor, region 1.1 superfamily PF550_14820 IPR007127 RNA polymerase sigma factor 70, region 1.1 PF550_14820 IPR028630 RNA polymerase sigma factor RpoD PF550_14820 IPR007630 RNA polymerase sigma-70 region 4 PF550_14820 IPR007624 RNA polymerase sigma-70 region 3 PF550_14820 IPR007627 RNA polymerase sigma-70 region 2 PF550_14820 IPR009042 RNA polymerase sigma-70 region 1.2 PF550_14820 IPR000943 RNA polymerase sigma-70 PF550_14820 IPR014284 RNA polymerase sigma-70 like domain PF550_14820 IPR007631 RNA polymerase sigma factor 70, non-essential domain PF550_14825 IPR007454 Uncharacterised protein family UPF0250 PF550_14825 IPR027471 YbeD-like domain superfamily PF550_14830 IPR020605 Octanoyltransferase, conserved site PF550_14830 IPR000544 Octanoyltransferase PF550_14830 IPR004143 Biotinyl protein ligase (BPL) and lipoyl protein ligase (LPL), catalytic domain PF550_14840 IPR001670 Alcohol dehydrogenase, iron-type/glycerol dehydrogenase GldA PF550_14840 IPR018211 Alcohol dehydrogenase, iron-type, conserved site PF550_14840 IPR039697 Iron-type alcohol dehydrogenase-like PF550_14845 IPR002293 Amino acid/polyamine transporter I PF550_14850 IPR029039 Flavoprotein-like superfamily PF550_14850 IPR005025 NADPH-dependent FMN reductase-like PF550_14850 IPR008254 Flavodoxin/nitric oxide synthase PF550_14855 IPR002577 Helix-turn-helix, HxlR type PF550_14855 IPR036388 Winged helix-like DNA-binding domain superfamily PF550_14855 IPR036390 Winged helix DNA-binding domain superfamily PF550_14860 IPR029028 Alpha/beta knot methyltransferases PF550_14860 IPR001537 tRNA/rRNA methyltransferase, SpoU type PF550_14860 IPR016914 tRNA (cytidine/uridine-2'-O-)-methyltransferase PF550_14860 IPR029026 tRNA (guanine-N1-)-methyltransferase, N-terminal PF550_14865 IPR006367 Sirohaem synthase, N-terminal PF550_14865 IPR019478 Sirohaem synthase, dimerisation domain PF550_14865 IPR028281 Siroheme synthase, central domain PF550_14865 IPR012409 Sirohaem synthase PF550_14865 IPR037115 Sirohaem synthase, dimerisation domain superfamily PF550_14865 IPR036291 NAD(P)-binding domain superfamily PF550_14865 IPR006366 Uroporphyrin-III C-methyltransferase PF550_14865 IPR003043 Uroporphiryn-III C-methyltransferase, conserved site PF550_14865 IPR014777 Tetrapyrrole methylase, subdomain 1 PF550_14865 IPR035996 Tetrapyrrole methylase superfamily PF550_14865 IPR000878 Tetrapyrrole methylase PF550_14865 IPR014776 Tetrapyrrole methylase, subdomain 2 PF550_14870 IPR010978 Class I and II aminoacyl-tRNA synthetase, tRNA-binding arm PF550_14870 IPR033729 Serine-tRNA ligase catalytic core domain PF550_14870 IPR042103 Serine-tRNA synthetase, type1, N-terminal domain superfamily PF550_14870 IPR015866 Serine-tRNA synthetase, type1, N-terminal PF550_14870 IPR002317 Serine-tRNA ligase, type1 PF550_14870 IPR006195 Aminoacyl-tRNA synthetase, class II PF550_14870 IPR002314 Aminoacyl-tRNA synthetase, class II (G/ P/ S/T) PF550_14880 IPR004564 Outer membrane lipoprotein carrier protein LolA-like PF550_14880 IPR029046 Lipoprotein localisation LolA/LolB/LppX PF550_14880 IPR018323 Outer membrane lipoprotein carrier protein LolA, Proteobacteria PF550_14885 IPR018261 Ribosomal protein L27, conserved site PF550_14885 IPR001684 Ribosomal protein L27 PF550_14890 IPR018258 Ribosomal protein L21, conserved site PF550_14890 IPR001787 Ribosomal protein L21 PF550_14890 IPR036164 L21-like superfamily PF550_14890 IPR028909 Ribosomal protein L21-like PF550_14900 IPR008949 Isoprenoid synthase domain superfamily PF550_14900 IPR000092 Polyprenyl synthetase PF550_14900 IPR033749 Polyprenyl synthetase, conserved site PF550_14910 IPR036938 Phosphatidic acid phosphatase type 2/haloperoxidase superfamily PF550_14910 IPR000326 Phosphatidic acid phosphatase type 2/haloperoxidase PF550_14915 IPR006143 RND efflux pump, membrane fusion protein PF550_14915 IPR032317 RND efflux pump, membrane fusion protein, barrel-sandwich domain PF550_14920 IPR004764 Hydrophobe/amphiphile efflux-1 HAE1 PF550_14920 IPR001036 Acriflavin resistance protein PF550_14920 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains PF550_14925 IPR010131 RND efflux system, outer membrane lipoprotein, NodT PF550_14925 IPR003423 Outer membrane efflux protein PF550_14930 IPR035439 UPF0145 domain superfamily PF550_14930 IPR002765 Uncharacterised protein family UPF0145 PF550_14935 IPR002765 Uncharacterised protein family UPF0145 PF550_14935 IPR035439 UPF0145 domain superfamily PF550_14945 IPR002347 Short-chain dehydrogenase/reductase SDR PF550_14945 IPR036291 NAD(P)-binding domain superfamily PF550_14945 IPR011284 3-oxoacyl-(acyl-carrier-protein) reductase PF550_14945 IPR020904 Short-chain dehydrogenase/reductase, conserved site PF550_14955 IPR013155 Methionyl/Valyl/Leucyl/Isoleucyl-tRNA synthetase, anticodon-binding PF550_14955 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold PF550_14955 IPR009080 Aminoacyl-tRNA synthetase, class Ia, anticodon-binding PF550_14955 IPR037118 Valyl-tRNA synthetase, tRNA-binding arm superfamily PF550_14955 IPR019499 Valyl-tRNA synthetase, tRNA-binding arm PF550_14955 IPR009008 Valyl/Leucyl/Isoleucyl-tRNA synthetase, editing domain PF550_14955 IPR002303 Valine-tRNA ligase PF550_14955 IPR002300 Aminoacyl-tRNA synthetase, class Ia PF550_14955 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site PF550_14955 IPR033705 Valyl tRNA synthetase, anticodon-binding domain PF550_14955 IPR010978 Class I and II aminoacyl-tRNA synthetase, tRNA-binding arm PF550_14960 IPR005271 Carboxy-S-adenosyl-L-methionine synthase PF550_14960 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase PF550_14960 IPR041698 Methyltransferase domain 25 PF550_14975 IPR005119 LysR, substrate-binding PF550_14975 IPR036388 Winged helix-like DNA-binding domain superfamily PF550_14975 IPR000847 Transcription regulator HTH, LysR PF550_14975 IPR036390 Winged helix DNA-binding domain superfamily PF550_14980 IPR001905 Ammonium transporter PF550_14980 IPR018047 Ammonium transporter, conserved site PF550_14980 IPR024041 Ammonium transporter AmtB-like domain PF550_14980 IPR029020 Ammonium/urea transporter PF550_14990 IPR004358 Signal transduction histidine kinase-related protein, C-terminal PF550_14990 IPR036890 Histidine kinase/HSP90-like ATPase superfamily PF550_14990 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain PF550_14990 IPR005467 Histidine kinase domain PF550_14990 IPR003594 Histidine kinase/HSP90-like ATPase PF550_14990 IPR003660 HAMP domain PF550_14990 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily PF550_14990 IPR013727 Two-component sensor kinase, N-terminal PF550_14995 IPR011006 CheY-like superfamily PF550_14995 IPR001867 OmpR/PhoB-type DNA-binding domain PF550_14995 IPR001789 Signal transduction response regulator, receiver domain PF550_14995 IPR039420 Transcriptional regulatory protein WalR-like PF550_14995 IPR036388 Winged helix-like DNA-binding domain superfamily PF550_15005 IPR009057 Homeobox-like domain superfamily PF550_15015 IPR024474 Zinc-finger binding domain of transposase IS66 PF550_15015 IPR024463 Transposase TnpC, homeodomain PF550_15015 IPR039552 Transposase IS66, C-terminal PF550_15015 IPR004291 Transposase, IS66 PF550_15030 IPR024463 Transposase TnpC, homeodomain PF550_15030 IPR004291 Transposase, IS66 PF550_15030 IPR039552 Transposase IS66, C-terminal PF550_15030 IPR024474 Zinc-finger binding domain of transposase IS66 PF550_15040 IPR009057 Homeobox-like domain superfamily PF550_15055 IPR002641 Patatin-like phospholipase domain PF550_15055 IPR001423 Lysophospholipase patatin, conserved site PF550_15055 IPR016035 Acyl transferase/acyl hydrolase/lysophospholipase PF550_15065 IPR001972 Stomatin family PF550_15065 IPR036013 Band 7/SPFH domain superfamily PF550_15065 IPR001107 Band 7 domain PF550_15065 IPR018080 Band 7/stomatin-like, conserved site PF550_15070 IPR038056 YjbR-like superfamily PF550_15070 IPR007351 Uncharacterised protein YjbR PF550_15075 IPR000092 Polyprenyl synthetase PF550_15075 IPR008949 Isoprenoid synthase domain superfamily PF550_15075 IPR033749 Polyprenyl synthetase, conserved site PF550_15080 IPR012709 2-methyl-aconitate isomerase PrpF PF550_15080 IPR007400 PrpF protein PF550_15085 IPR004841 Amino acid permease/ SLC12A domain PF550_15085 IPR004840 Amino acid permease, conserved site PF550_15120 IPR002818 DJ-1/PfpI PF550_15120 IPR017283 Protein/nucleic acid deglycase HchA PF550_15120 IPR029062 Class I glutamine amidotransferase-like PF550_15125 IPR009081 Phosphopantetheine binding ACP domain PF550_15125 IPR020807 Polyketide synthase, dehydratase domain PF550_15125 IPR020841 Polyketide synthase, beta-ketoacyl synthase domain PF550_15125 IPR032821 Ketoacyl-synthetase, C-terminal extension PF550_15125 IPR042104 Polyketide synthase, dehydratase domain superfamily PF550_15125 IPR020843 Polyketide synthase, enoylreductase domain PF550_15125 IPR036291 NAD(P)-binding domain superfamily PF550_15125 IPR016036 Malonyl-CoA ACP transacylase, ACP-binding PF550_15125 IPR014030 Beta-ketoacyl synthase, N-terminal PF550_15125 IPR013968 Polyketide synthase, ketoreductase domain PF550_15125 IPR020806 Polyketide synthase, phosphopantetheine-binding domain PF550_15125 IPR015083 Polyketide synthase, docking domain PF550_15125 IPR006162 Phosphopantetheine attachment site PF550_15125 IPR018201 Beta-ketoacyl synthase, active site PF550_15125 IPR011032 GroES-like superfamily PF550_15125 IPR015357 Erythronolide synthase, docking PF550_15125 IPR036347 Erythronolide synthase, docking domain superfamily PF550_15125 IPR013154 Alcohol dehydrogenase, N-terminal PF550_15125 IPR016035 Acyl transferase/acyl hydrolase/lysophospholipase PF550_15125 IPR014043 Acyl transferase PF550_15125 IPR036736 ACP-like superfamily PF550_15125 IPR001227 Acyl transferase domain superfamily PF550_15125 IPR014031 Beta-ketoacyl synthase, C-terminal PF550_15125 IPR016039 Thiolase-like PF550_15130 IPR018060 DNA binding HTH domain, AraC-type PF550_15130 IPR009057 Homeobox-like domain superfamily PF550_15130 IPR009594 Transcription regulator HTH, AraC, N-terminal PF550_15135 IPR003824 Undecaprenyl-diphosphatase UppP PF550_15155 IPR029039 Flavoprotein-like superfamily PF550_15155 IPR003680 Flavodoxin-like fold PF550_15165 IPR036412 HAD-like superfamily PF550_15165 IPR023214 HAD superfamily PF550_15165 IPR011863 Phosphoserine phosphatase/homoserine phosphotransferase bifunctional protein PF550_15170 IPR011798 Adenosine 5'-phosphosulphate reductase PF550_15170 IPR004511 Phosphoadenosine phosphosulphate/adenosine 5'-phosphosulphate reductase PF550_15170 IPR002500 Phosphoadenosine phosphosulphate reductase PF550_15170 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold PF550_15175 IPR009721 O-acyltransferase WSD1, C-terminal PF550_15175 IPR004255 O-acyltransferase, WSD1, N-terminal PF550_15175 IPR014292 Acyltransferase, WS/DGAT/MGAT PF550_15185 IPR012340 Nucleic acid-binding, OB-fold PF550_15185 IPR019307 RNA-binding protein AU-1/Ribonuclease E/G PF550_15185 IPR004659 Ribonuclease E/G PF550_15185 IPR022967 RNA-binding domain, S1 PF550_15185 IPR003029 S1 domain PF550_15190 IPR029001 Inosine triphosphate pyrophosphatase-like PF550_15190 IPR003697 Nucleoside triphosphate pyrophosphatase Maf-like protein PF550_15195 IPR026034 Cell shape-determining protein MreD, proteobacterial type PF550_15195 IPR007227 Cell shape-determining protein MreD PF550_15200 IPR042175 Cell/Rod shape-determining protein MreC, domain 2 PF550_15200 IPR007221 Rod shape-determining protein MreC PF550_15200 IPR042177 Cell/Rod shape-determining protein MreC, domain 1 PF550_15205 IPR004753 Cell shape determining protein MreB PF550_15210 IPR003837 Glu-tRNAGln amidotransferase C subunit PF550_15210 IPR036113 Glu-tRNAGln amidotransferase superfamily, subunit C PF550_15215 IPR000120 Amidase PF550_15215 IPR020556 Amidase, conserved site PF550_15215 IPR023631 Amidase signature domain PF550_15215 IPR036928 Amidase signature (AS) superfamily PF550_15215 IPR004412 Glutamyl-tRNA(Gln) amidotransferase A subunit PF550_15220 IPR006075 Aspartyl/Glutamyl-tRNA(Gln) amidotransferase, subunit B/E, catalytic PF550_15220 IPR014746 Glutamine synthetase/guanido kinase, catalytic domain PF550_15220 IPR017958 Glutamyl-tRNA(Gln) amidotransferase, subunit B, conserved site PF550_15220 IPR023168 Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase, C-terminal, domain 2 PF550_15220 IPR042114 Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase, C-terminal, domain 1 PF550_15220 IPR017959 Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase, subunit B /E PF550_15220 IPR018027 Asn/Gln amidotransferase PF550_15220 IPR004413 Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase, B subunit PF550_15220 IPR003789 Aspartyl/glutamyl-tRNA amidotransferase subunit B-like PF550_15245 IPR036640 ABC transporter type 1, transmembrane domain superfamily PF550_15245 IPR009248 SbmA/BacA-like PF550_15250 IPR005789 Threonine dehydratase, catabolic PF550_15250 IPR036052 Tryptophan synthase beta subunit-like PLP-dependent enzyme PF550_15250 IPR000634 Serine/threonine dehydratase, pyridoxal-phosphate-binding site PF550_15250 IPR001926 Pyridoxal-phosphate dependent enzyme PF550_15250 IPR002912 ACT domain PF550_15255 IPR002641 Patatin-like phospholipase domain PF550_15255 IPR001423 Lysophospholipase patatin, conserved site PF550_15255 IPR016035 Acyl transferase/acyl hydrolase/lysophospholipase PF550_15260 IPR001463 Sodium:alanine symporter PF550_15275 IPR029479 Nitroreductase PF550_15275 IPR000415 Nitroreductase-like PF550_15280 IPR004734 Multidrug resistance protein PF550_15280 IPR036259 MFS transporter superfamily PF550_15280 IPR020846 Major facilitator superfamily domain PF550_15280 IPR011701 Major facilitator superfamily PF550_15280 IPR004812 Drug resistance transporter Bcr/CmlA subfamily PF550_15285 IPR010019 Integral membrane protein, YccS PF550_15285 IPR010020 Integral membrane protein, YccS/YhfK PF550_15285 IPR032692 Integral membrane protein YccS, N-terminal PF550_15295 IPR023173 NADPH-cytochrome p450 reductase, FAD-binding, alpha-helical domain superfamily PF550_15295 IPR039261 Ferredoxin-NADP reductase (FNR), nucleotide-binding domain PF550_15295 IPR029039 Flavoprotein-like superfamily PF550_15295 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase PF550_15295 IPR008254 Flavodoxin/nitric oxide synthase PF550_15295 IPR001094 Flavodoxin-like PF550_15295 IPR001433 Oxidoreductase FAD/NAD(P)-binding PF550_15295 IPR003097 Sulfite reductase [NADPH] flavoprotein alpha-component-like, FAD-binding PF550_15295 IPR017938 Riboflavin synthase-like beta-barrel PF550_15295 IPR029758 Sulphite reductase [NADPH] flavoprotein, alpha chain, Proteobacteria PF550_15295 IPR017927 FAD-binding domain, ferredoxin reductase-type PF550_15295 IPR010199 Sulphite reductase [NADPH] flavoprotein, alpha chain PF550_15335 IPR005490 L,D-transpeptidase catalytic domain PF550_15335 IPR038063 L,D-transpeptidase catalytic domain-like PF550_15335 IPR041597 L,D-transpeptidase C-terminal domain PF550_15340 IPR007401 Protein of unknown function DUF454 PF550_15350 IPR012556 Entericidin A/B PF550_15355 IPR036264 Bacterial exopeptidase dimerisation domain PF550_15355 IPR005941 Succinyl-diaminopimelate desuccinylase, proteobacteria PF550_15355 IPR011650 Peptidase M20, dimerisation domain PF550_15355 IPR002933 Peptidase M20 PF550_15365 IPR001789 Signal transduction response regulator, receiver domain PF550_15365 IPR036061 CheW-like domain superfamily PF550_15365 IPR002545 CheW-like domain PF550_15365 IPR011006 CheY-like superfamily PF550_15365 IPR003594 Histidine kinase/HSP90-like ATPase PF550_15365 IPR036890 Histidine kinase/HSP90-like ATPase superfamily PF550_15365 IPR005467 Histidine kinase domain PF550_15365 IPR036641 HPT domain superfamily PF550_15365 IPR004358 Signal transduction histidine kinase-related protein, C-terminal PF550_15365 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain PF550_15370 IPR029095 NarX-like, N-terminal PF550_15370 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain PF550_15370 IPR003660 HAMP domain PF550_15370 IPR004090 Chemotaxis methyl-accepting receptor PF550_15375 IPR039315 Chemotaxis protein CheW PF550_15375 IPR036061 CheW-like domain superfamily PF550_15375 IPR002545 CheW-like domain PF550_15380 IPR001789 Signal transduction response regulator, receiver domain PF550_15380 IPR011006 CheY-like superfamily PF550_15385 IPR011006 CheY-like superfamily PF550_15385 IPR001789 Signal transduction response regulator, receiver domain PF550_15400 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains PF550_15400 IPR001036 Acriflavin resistance protein PF550_15405 IPR002316 Proline-tRNA ligase, class IIa PF550_15405 IPR036621 Anticodon-binding domain superfamily PF550_15405 IPR004154 Anticodon-binding PF550_15405 IPR033730 Prokaryote proline-tRNA ligase core domain PF550_15405 IPR006195 Aminoacyl-tRNA synthetase, class II PF550_15405 IPR002314 Aminoacyl-tRNA synthetase, class II (G/ P/ S/T) PF550_15405 IPR007214 YbaK/aminoacyl-tRNA synthetase-associated domain PF550_15405 IPR023717 Prolyl-tRNA synthetase, class IIa, type 1 PF550_15405 IPR004500 Prolyl-tRNA synthetase, class IIa, bacterial-type PF550_15405 IPR036754 YbaK/aminoacyl-tRNA synthetase-associated domain superfamily PF550_15410 IPR010879 Domain of unknown function DUF1508 PF550_15410 IPR036913 YegP-like superfamily PF550_15415 IPR013988 PhnA protein, C-terminal PF550_15415 IPR013987 PhnA protein, N-terminal PF550_15415 IPR004624 PhnA protein PF550_15420 IPR007438 Protein of unknown function DUF488 PF550_15430 IPR028896 Aminomethyltransferase-like PF550_15430 IPR006222 Aminomethyltransferase, folate-binding domain PF550_15430 IPR017703 YgfZ/GcvT conserved site PF550_15430 IPR029043 Glycine cleavage T-protein/YgfZ, C-terminal PF550_15435 IPR033954 Disulphide bond isomerase, DsbC/G PF550_15435 IPR018950 Disulphide bond isomerase, DsbC/G, N-terminal PF550_15435 IPR009094 Disulphide bond isomerase DsbC/G, N-terminal domain superfamily PF550_15435 IPR012336 Thioredoxin-like fold PF550_15435 IPR036249 Thioredoxin-like superfamily PF550_15435 IPR017937 Thioredoxin, conserved site PF550_15445 IPR004776 Membrane transport protein PF550_15450 IPR001155 NADH:flavin oxidoreductase/NADH oxidase, N-terminal PF550_15450 IPR023663 NADPH dehydrogenase PF550_15450 IPR013785 Aldolase-type TIM barrel PF550_15455 IPR037066 TonB-dependent receptor, plug domain superfamily PF550_15455 IPR000531 TonB-dependent receptor-like, beta-barrel PF550_15455 IPR036942 TonB-dependent receptor-like, beta-barrel domain superfamily PF550_15455 IPR010105 TonB-dependent siderophore receptor PF550_15455 IPR039426 Vitamin B12 transporter BtuB-like PF550_15455 IPR012910 TonB-dependent receptor, plug domain PF550_15460 IPR011034 Formyl transferase-like, C-terminal domain superfamily PF550_15460 IPR003180 Methylpurine-DNA glycosylase PF550_15460 IPR036995 Methylpurine-DNA glycosylase superfamily PF550_15465 IPR010663 Zinc finger, FPG/IleRS-type PF550_15465 IPR000214 Zinc finger, DNA glycosylase/AP lyase-type PF550_15465 IPR012319 Formamidopyrimidine-DNA glycosylase, catalytic domain PF550_15465 IPR035937 MutM-like, N-terminal PF550_15465 IPR010979 Ribosomal protein S13-like, H2TH PF550_15465 IPR015886 DNA glycosylase/AP lyase, H2TH DNA-binding PF550_15465 IPR020629 Formamidopyrimidine-DNA glycosylase PF550_15470 IPR000297 Peptidyl-prolyl cis-trans isomerase, PpiC-type PF550_15470 IPR023058 Peptidyl-prolyl cis-trans isomerase, PpiC-type, conserved site PF550_15470 IPR027304 Trigger factor/SurA domain superfamily PF550_15470 IPR023059 Foldase protein PrsA PF550_15480 IPR036019 Gated mechanosensitive channel PF550_15480 IPR019823 Large-conductance mechanosensitive channel, conserved site PF550_15480 IPR001185 Large-conductance mechanosensitive channel PF550_15480 IPR037673 Large-conductance mechanosensitive channel/anditomin synthesis protein L PF550_15485 IPR006298 GTP-binding protein TypA PF550_15485 IPR042116 GTP-binding protein TypA/BipA, C-terminal PF550_15485 IPR009000 Translation protein, beta-barrel domain superfamily PF550_15485 IPR000795 Transcription factor, GTP-binding domain PF550_15485 IPR027417 P-loop containing nucleoside triphosphate hydrolase PF550_15485 IPR004161 Translation elongation factor EFTu-like, domain 2 PF550_15485 IPR000640 Elongation factor EFG, domain V-like PF550_15485 IPR035647 EF-G domain III/V-like PF550_15485 IPR035651 BipA, domain V PF550_15485 IPR005225 Small GTP-binding protein domain PF550_15485 IPR031157 Tr-type G domain, conserved site PF550_15490 IPR006042 Xanthine/uracil permease PF550_15490 IPR006043 Xanthine/uracil/vitamin C permease PF550_15495 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase PF550_15495 IPR002052 DNA methylase, N-6 adenine-specific, conserved site PF550_15495 IPR013675 Methyltransferase small, N-terminal PF550_15495 IPR023543 rRNA small subunit methyltransferase C PF550_15495 IPR007848 Methyltransferase small domain PF550_15500 IPR004840 Amino acid permease, conserved site PF550_15500 IPR004841 Amino acid permease/ SLC12A domain PF550_15505 IPR036025 tRNA-splicing ligase RtcB-like superfamily PF550_15505 IPR001233 tRNA-splicing ligase, RtcB PF550_15515 IPR011250 Outer membrane protein/outer membrane enzyme PagP, beta-barrel PF550_15515 IPR027385 Outer membrane protein beta-barrel domain PF550_15515 IPR006664 Outer membrane protein, bacterial PF550_15515 IPR006665 OmpA-like domain PF550_15515 IPR036737 OmpA-like domain superfamily PF550_15525 IPR020615 Thiolase, acyl-enzyme intermediate active site PF550_15525 IPR020610 Thiolase, active site PF550_15525 IPR020617 Thiolase, C-terminal PF550_15525 IPR020613 Thiolase, conserved site PF550_15525 IPR020616 Thiolase, N-terminal PF550_15525 IPR016039 Thiolase-like PF550_15525 IPR002155 Thiolase PF550_15535 IPR000390 Small multidrug resistance protein family PF550_15545 IPR005117 Nitrite/Sulfite reductase ferredoxin-like domain PF550_15545 IPR036136 Nitrite/Sulfite reductase ferredoxin-like domain superfamily PF550_15545 IPR006067 Nitrite/sulphite reductase 4Fe-4S domain PF550_15545 IPR006066 Nitrite/sulphite reductase iron-sulphur/sirohaem-binding site PF550_15550 IPR011047 Quinoprotein alcohol dehydrogenase-like superfamily PF550_15550 IPR001479 Quinoprotein dehydrogenase, conserved site PF550_15550 IPR017511 PQQ-dependent membrane bound dehydrogenase PF550_15550 IPR018391 Pyrrolo-quinoline quinone beta-propeller repeat PF550_15550 IPR002372 Pyrrolo-quinoline quinone repeat PF550_15555 IPR007049 Carbohydrate-selective porin OprB PF550_15555 IPR038673 Carbohydrate-selective porin OprB superfamily PF550_15560 IPR023606 CoA-transferase family III domain superfamily PF550_15560 IPR003673 CoA-transferase family III PF550_15565 IPR009057 Homeobox-like domain superfamily PF550_15565 IPR037923 Transcription regulator HTH-like PF550_15565 IPR018060 DNA binding HTH domain, AraC-type PF550_15565 IPR018062 HTH domain AraC-type, conserved site PF550_15565 IPR020449 Transcription regulator HTH, AraC- type PF550_15565 IPR003313 AraC-type arabinose-binding/dimerisation domain PF550_15570 IPR020613 Thiolase, conserved site PF550_15570 IPR020617 Thiolase, C-terminal PF550_15570 IPR020610 Thiolase, active site PF550_15570 IPR020615 Thiolase, acyl-enzyme intermediate active site PF550_15570 IPR016039 Thiolase-like PF550_15570 IPR002155 Thiolase PF550_15570 IPR020616 Thiolase, N-terminal PF550_15575 IPR006176 3-hydroxyacyl-CoA dehydrogenase, NAD binding PF550_15575 IPR006180 3-hydroxyacyl-CoA dehydrogenase, conserved site PF550_15575 IPR006108 3-hydroxyacyl-CoA dehydrogenase, C-terminal PF550_15575 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily PF550_15575 IPR029045 ClpP/crotonase-like domain superfamily PF550_15575 IPR001753 Enoyl-CoA hydratase/isomerase PF550_15575 IPR012802 Fatty oxidation complex, alpha subunit FadJ PF550_15575 IPR036291 NAD(P)-binding domain superfamily PF550_15600 IPR005744 Hly-III PF550_15600 IPR004254 AdipoR/Haemolysin-III-related PF550_15605 IPR011701 Major facilitator superfamily PF550_15605 IPR020846 Major facilitator superfamily domain PF550_15605 IPR005828 Major facilitator, sugar transporter-like PF550_15605 IPR036259 MFS transporter superfamily PF550_15605 IPR004736 MFS transporter, metabolite:H symporter PF550_15605 IPR005829 Sugar transporter, conserved site PF550_15615 IPR036670 SecA, preprotein cross-linking domain superfamily PF550_15615 IPR011116 SecA Wing/Scaffold PF550_15615 IPR011130 SecA, preprotein cross-linking domain PF550_15615 IPR014018 SecA motor DEAD PF550_15615 IPR011115 SecA DEAD-like, N-terminal PF550_15615 IPR020937 SecA conserved site PF550_15615 IPR000185 Protein translocase subunit SecA PF550_15615 IPR004027 SEC-C motif PF550_15615 IPR027417 P-loop containing nucleoside triphosphate hydrolase PF550_15615 IPR036266 SecA, Wing/Scaffold superfamily PF550_15620 IPR000866 Alkyl hydroperoxide reductase subunit C/ Thiol specific antioxidant PF550_15620 IPR024706 Peroxiredoxin, AhpC-type PF550_15620 IPR019479 Peroxiredoxin, C-terminal PF550_15620 IPR022915 Peroxiredoxin, TDXH subfamily PF550_15620 IPR036249 Thioredoxin-like superfamily PF550_15620 IPR013766 Thioredoxin domain PF550_15625 IPR001279 Metallo-beta-lactamase PF550_15625 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like PF550_15640 IPR013221 Mur ligase, central PF550_15640 IPR036615 Mur ligase, C-terminal domain superfamily PF550_15640 IPR004101 Mur ligase, C-terminal PF550_15640 IPR036565 Mur-like, catalytic domain superfamily PF550_15640 IPR018109 Folylpolyglutamate synthetase, conserved site PF550_15640 IPR001645 Folylpolyglutamate synthetase PF550_15645 IPR000438 Acetyl-CoA carboxylase carboxyl transferase, beta subunit PF550_15645 IPR011762 Acetyl-coenzyme A carboxyltransferase, N-terminal PF550_15645 IPR034733 Acetyl-CoA carboxylase PF550_15645 IPR029045 ClpP/crotonase-like domain superfamily PF550_15650 IPR013785 Aldolase-type TIM barrel PF550_15650 IPR018204 Tryptophan synthase, alpha chain, active site PF550_15650 IPR002028 Tryptophan synthase, alpha chain PF550_15650 IPR011060 Ribulose-phosphate binding barrel PF550_15675 IPR006654 Tryptophan synthase, beta chain PF550_15675 IPR006653 Tryptophan synthase, beta chain, conserved site PF550_15675 IPR001926 Pyridoxal-phosphate dependent enzyme PF550_15675 IPR036052 Tryptophan synthase beta subunit-like PLP-dependent enzyme PF550_15675 IPR023026 Tryptophan synthase beta chain/beta chain-like PF550_15680 IPR013785 Aldolase-type TIM barrel PF550_15680 IPR001240 N-(5'phosphoribosyl) anthranilate isomerase (PRAI) PF550_15680 IPR011060 Ribulose-phosphate binding barrel PF550_15685 IPR010101 TonB-dependent vitamin B12 transporter BtuB PF550_15685 IPR039426 Vitamin B12 transporter BtuB-like PF550_15685 IPR012910 TonB-dependent receptor, plug domain PF550_15685 IPR037066 TonB-dependent receptor, plug domain superfamily PF550_15685 IPR000531 TonB-dependent receptor-like, beta-barrel PF550_15685 IPR010916 TonB box, conserved site PF550_15685 IPR036942 TonB-dependent receptor-like, beta-barrel domain superfamily PF550_15685 IPR010917 TonB-dependent receptor, conserved site PF550_15690 IPR029499 ATP:cob(I)alamin adenosyltransferase, PduO-type PF550_15690 IPR036451 Cobalamin adenosyltransferase-like superfamily PF550_15690 IPR016030 Cobalamin adenosyltransferase-like PF550_15710 IPR003846 Protein adenylyltransferase SelO PF550_15715 IPR001867 OmpR/PhoB-type DNA-binding domain PF550_15715 IPR016032 Signal transduction response regulator, C-terminal effector PF550_15715 IPR001789 Signal transduction response regulator, receiver domain PF550_15715 IPR039420 Transcriptional regulatory protein WalR-like PF550_15715 IPR036388 Winged helix-like DNA-binding domain superfamily PF550_15715 IPR011006 CheY-like superfamily PF550_15720 IPR003660 HAMP domain PF550_15720 IPR003594 Histidine kinase/HSP90-like ATPase PF550_15720 IPR036890 Histidine kinase/HSP90-like ATPase superfamily PF550_15720 IPR005467 Histidine kinase domain PF550_15720 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain PF550_15720 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily PF550_15720 IPR004358 Signal transduction histidine kinase-related protein, C-terminal PF550_15730 IPR036250 Acyl-CoA dehydrogenase-like, C-terminal PF550_15730 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal PF550_15730 IPR006091 Acyl-CoA oxidase/dehydrogenase, central domain PF550_15730 IPR025878 Acetyl-CoA dehydrogenase-like C-terminal domain PF550_15730 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily PF550_15730 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal PF550_15730 IPR037069 Acyl-CoA dehydrogenase/oxidase, N-terminal domain superfamily PF550_15735 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily PF550_15735 IPR025878 Acetyl-CoA dehydrogenase-like C-terminal domain PF550_15735 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal PF550_15735 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal PF550_15735 IPR036250 Acyl-CoA dehydrogenase-like, C-terminal PF550_15735 IPR006091 Acyl-CoA oxidase/dehydrogenase, central domain PF550_15735 IPR037069 Acyl-CoA dehydrogenase/oxidase, N-terminal domain superfamily PF550_15740 IPR009315 Phosphate-starvation-induced PsiE PF550_15740 IPR020948 Phosphate-starvation-induced PsiE-like PF550_15760 IPR039426 Vitamin B12 transporter BtuB-like PF550_15760 IPR012910 TonB-dependent receptor, plug domain PF550_15760 IPR037066 TonB-dependent receptor, plug domain superfamily PF550_15760 IPR000531 TonB-dependent receptor-like, beta-barrel PF550_15770 IPR006195 Aminoacyl-tRNA synthetase, class II PF550_15770 IPR004524 Aspartate-tRNA ligase, type 1 PF550_15770 IPR002312 Aspartyl/Asparaginyl-tRNA synthetase, class IIb PF550_15770 IPR004115 GAD-like domain superfamily PF550_15770 IPR029351 GAD domain PF550_15770 IPR012340 Nucleic acid-binding, OB-fold PF550_15770 IPR004365 OB-fold nucleic acid binding domain, AA-tRNA synthetase-type PF550_15770 IPR004364 Aminoacyl-tRNA synthetase, class II (D/K/N) PF550_15775 IPR021520 Stealth protein CR2, conserved region 2 PF550_15775 IPR031357 Stealth protein CR3, conserved region 3 PF550_15775 IPR031358 Stealth protein CR1, conserved region 1 PF550_15800 IPR001296 Glycosyl transferase, family 1 PF550_15800 IPR028098 Glycosyltransferase subfamily 4-like, N-terminal domain PF550_15805 IPR029044 Nucleotide-diphospho-sugar transferases PF550_15805 IPR001173 Glycosyltransferase 2-like PF550_15810 IPR002509 NodB homology domain PF550_15810 IPR011330 Glycoside hydrolase/deacetylase, beta/alpha-barrel PF550_15825 IPR001544 Aminotransferase class IV PF550_15825 IPR018300 Aminotransferase, class IV, conserved site PF550_15825 IPR036038 Aminotransferase-like, PLP-dependent enzymes PF550_15825 IPR033939 Branched-chain aminotransferase PF550_15825 IPR005785 Branched-chain amino acid aminotransferase I PF550_15830 IPR013546 PII-uridylyltransferase/Glutamine-synthetase adenylyltransferase PF550_15830 IPR023057 Bifunctional glutamine synthetase adenylyltransferase/adenylyl-removing enzyme PF550_15830 IPR005190 Glutamate-ammonia ligase adenylyltransferase, repeated domain PF550_15835 IPR036249 Thioredoxin-like superfamily PF550_15835 IPR004358 Signal transduction histidine kinase-related protein, C-terminal PF550_15835 IPR023527 Adaptive-response sensory-kinase SasA PF550_15835 IPR011649 KaiB domain PF550_15835 IPR003594 Histidine kinase/HSP90-like ATPase PF550_15835 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain PF550_15835 IPR005467 Histidine kinase domain PF550_15835 IPR036890 Histidine kinase/HSP90-like ATPase superfamily PF550_15835 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily PF550_15845 IPR042118 QueA, domain 1 PF550_15845 IPR042119 QueA, domain 2 PF550_15845 IPR036100 S-adenosylmethionine:tRNA ribosyltransferase-isomerase, QueA superfamily PF550_15845 IPR003699 S-adenosylmethionine:tRNA ribosyltransferase-isomerase, QueA PF550_15860 IPR004803 tRNA-guanine transglycosylase PF550_15860 IPR036511 Queuine tRNA-ribosyltransferase-like PF550_15860 IPR002616 tRNA-guanine(15) transglycosylase-like PF550_15865 IPR003849 Preprotein translocase YajC PF550_15870 IPR027398 SecD export protein N-terminal TM domain PF550_15870 IPR005791 Protein translocase subunit SecD PF550_15870 IPR022813 Protein-export membrane protein SecD/SecF, archaeal and bacterial PF550_15870 IPR022646 Protein-export membrane protein SecD/SecF/SecDF, conserved site PF550_15870 IPR022645 Protein-export membrane protein SecD/SecF, bacterial PF550_15875 IPR022813 Protein-export membrane protein SecD/SecF, archaeal and bacterial PF550_15875 IPR022645 Protein-export membrane protein SecD/SecF, bacterial PF550_15875 IPR022646 Protein-export membrane protein SecD/SecF/SecDF, conserved site PF550_15875 IPR005665 Protein-export membrane protein SecF, bacterial PF550_15880 IPR036551 Flavin prenyltransferase-like PF550_15880 IPR003382 Flavoprotein PF550_15880 IPR005252 Coenzyme A biosynthesis bifunctional protein CoaBC PF550_15880 IPR035929 CoaB-like superfamily PF550_15880 IPR007085 DNA/pantothenate metabolism flavoprotein, C-terminal PF550_15885 IPR037518 MPN domain PF550_15885 IPR025657 RadC-like JAB domain PF550_15885 IPR010994 RuvA domain 2-like PF550_15885 IPR001405 Uncharacterised protein family UPF0758 PF550_15890 IPR021134 Bestrophin/UPF0187 PF550_15895 IPR004013 PHP domain PF550_15895 IPR003141 Polymerase/histidinol phosphatase, N-terminal PF550_15895 IPR016195 Polymerase/histidinol phosphatase-like PF550_15900 IPR006008 Intracellular septation protein A PF550_15905 IPR011008 Dimeric alpha-beta barrel PF550_15905 IPR005545 YCII-related PF550_15915 IPR006076 FAD dependent oxidoreductase PF550_15915 IPR036188 FAD/NAD(P)-binding domain superfamily PF550_15915 IPR008471 MnmC-like methyltransferase PF550_15915 IPR023032 tRNA 5-methylaminomethyl-2-thiouridine biosynthesis bifunctional protein MnmC PF550_15915 IPR017610 tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal PF550_15925 IPR035571 UPF0234-like, C-terminal PF550_15925 IPR007551 Protein of unknown function DUF520 PF550_15925 IPR035570 UPF0234, N-terminal PF550_15925 IPR036183 YajQ-like superfamily PF550_15935 IPR040170 Cytosolic acyl coenzyme A thioester hydrolase PF550_15935 IPR033120 Hotdog acyl-CoA thioesterase (ACOT)-type domain PF550_15935 IPR029069 HotDog domain superfamily PF550_15935 IPR006683 Thioesterase domain PF550_15940 IPR005746 Thioredoxin PF550_15940 IPR036249 Thioredoxin-like superfamily PF550_15940 IPR017937 Thioredoxin, conserved site PF550_15940 IPR013766 Thioredoxin domain PF550_15945 IPR029058 Alpha/Beta hydrolase fold PF550_15945 IPR000073 Alpha/beta hydrolase fold-1 PF550_15950 IPR005939 Beta-lactamase hydrolase-like PF550_15950 IPR001279 Metallo-beta-lactamase PF550_15950 IPR029021 Protein-tyrosine phosphatase-like PF550_15950 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like PF550_15960 IPR012999 Pyridine nucleotide-disulphide oxidoreductase, class I, active site PF550_15960 IPR004099 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain PF550_15960 IPR001100 Pyridine nucleotide-disulphide oxidoreductase, class I PF550_15960 IPR023753 FAD/NAD(P)-binding domain PF550_15960 IPR016156 FAD/NAD-linked reductase, dimerisation domain superfamily PF550_15960 IPR036188 FAD/NAD(P)-binding domain superfamily PF550_15960 IPR006258 Dihydrolipoamide dehydrogenase PF550_15995 IPR003660 HAMP domain PF550_15995 IPR033417 Periplasmic sensor domain CHASE8 PF550_15995 IPR000160 GGDEF domain PF550_15995 IPR029787 Nucleotide cyclase PF550_16000 IPR011250 Outer membrane protein/outer membrane enzyme PagP, beta-barrel PF550_16000 IPR006664 Outer membrane protein, bacterial PF550_16000 IPR002368 Outer membrane protein, OmpA PF550_16000 IPR006665 OmpA-like domain PF550_16000 IPR006690 Outer membrane protein, OmpA-like, conserved site PF550_16000 IPR036737 OmpA-like domain superfamily PF550_16000 IPR000498 Outer membrane protein OmpA-like, transmembrane domain PF550_16005 IPR019546 Twin-arginine translocation pathway, signal sequence, bacterial/archaeal PF550_16005 IPR006311 Twin-arginine translocation pathway, signal sequence PF550_16005 IPR004843 Calcineurin-like phosphoesterase domain, ApaH type PF550_16005 IPR029052 Metallo-dependent phosphatase-like PF550_16010 IPR030871 Cardiolipin synthase C PF550_16010 IPR025202 Phospholipase D-like domain PF550_16010 IPR001736 Phospholipase D/Transphosphatidylase PF550_16020 IPR016496 GTPase HflX PF550_16020 IPR027417 P-loop containing nucleoside triphosphate hydrolase PF550_16020 IPR042108 GTPase HflX, N-terminal domain superfamily PF550_16020 IPR006073 GTP binding domain PF550_16020 IPR025121 GTPase HflX, N-terminal PF550_16020 IPR030394 HflX-type guanine nucleotide-binding (G) domain PF550_16020 IPR035647 EF-G domain III/V-like PF550_16020 IPR032305 GTP-binding protein, middle domain PF550_16040 IPR004617 Bis(5'-nucleosyl)-tetraphosphatase (symmetrical) PF550_16040 IPR004843 Calcineurin-like phosphoesterase domain, ApaH type PF550_16040 IPR029052 Metallo-dependent phosphatase-like PF550_16045 IPR023165 rRNA adenine dimethylase-like PF550_16045 IPR001737 Ribosomal RNA adenine methyltransferase KsgA/Erm PF550_16045 IPR020596 Ribosomal RNA adenine methylase transferase, conserved site PF550_16045 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase PF550_16045 IPR011530 Ribosomal RNA adenine dimethylase PF550_16045 IPR020598 Ribosomal RNA adenine methylase transferase, N-terminal PF550_16050 IPR005255 PdxA family PF550_16050 IPR037510 4-hydroxythreonine-4-phosphate dehydrogenase PF550_16055 IPR036899 Ribosomal protein L13 superfamily PF550_16055 IPR005823 Ribosomal protein L13, bacterial-type PF550_16055 IPR005822 Ribosomal protein L13 PF550_16060 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup PF550_16060 IPR000754 Ribosomal protein S9 PF550_16060 IPR023035 Ribosomal protein S9, bacterial/plastid PF550_16060 IPR020568 Ribosomal protein S5 domain 2-type fold PF550_16060 IPR020574 Ribosomal protein S9, conserved site PF550_16065 IPR004045 Glutathione S-transferase, N-terminal PF550_16065 IPR036249 Thioredoxin-like superfamily PF550_16065 IPR004046 Glutathione S-transferase, C-terminal PF550_16065 IPR040079 Glutathione Transferase family PF550_16065 IPR034341 Stringent starvation protein A, N-terminal PF550_16065 IPR010987 Glutathione S-transferase, C-terminal-like PF550_16065 IPR036282 Glutathione S-transferase, C-terminal domain superfamily PF550_16070 IPR007481 Stringent starvation protein B PF550_16070 IPR036760 SspB-like superfamily PF550_16080 IPR011053 Single hybrid motif PF550_16080 IPR011054 Rudiment single hybrid motif PF550_16080 IPR016185 Pre-ATP-grasp domain superfamily PF550_16080 IPR000089 Biotin/lipoyl attachment PF550_16080 IPR005482 Biotin carboxylase, C-terminal PF550_16080 IPR011764 Biotin carboxylation domain PF550_16080 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain PF550_16080 IPR005481 Biotin carboxylase-like, N-terminal domain PF550_16080 IPR011761 ATP-grasp fold PF550_16080 IPR001882 Biotin-binding site PF550_16090 IPR006089 Acyl-CoA dehydrogenase, conserved site PF550_16090 IPR006091 Acyl-CoA oxidase/dehydrogenase, central domain PF550_16090 IPR036250 Acyl-CoA dehydrogenase-like, C-terminal PF550_16090 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal PF550_16090 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal PF550_16090 IPR037069 Acyl-CoA dehydrogenase/oxidase, N-terminal domain superfamily PF550_16090 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily PF550_16095 IPR034733 Acetyl-CoA carboxylase PF550_16095 IPR011763 Acetyl-coenzyme A carboxyltransferase, C-terminal PF550_16095 IPR029045 ClpP/crotonase-like domain superfamily PF550_16095 IPR011762 Acetyl-coenzyme A carboxyltransferase, N-terminal PF550_16100 IPR036291 NAD(P)-binding domain superfamily PF550_16100 IPR002347 Short-chain dehydrogenase/reductase SDR PF550_16110 IPR009057 Homeobox-like domain superfamily PF550_16110 IPR001647 DNA-binding HTH domain, TetR-type PF550_16110 IPR036271 Tetracyclin repressor-like, C-terminal domain superfamily PF550_16110 IPR041490 HTH-type transcriptional repressor KstR2, C-terminal PF550_16115 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal PF550_16115 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal PF550_16115 IPR037069 Acyl-CoA dehydrogenase/oxidase, N-terminal domain superfamily PF550_16115 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily PF550_16115 IPR006091 Acyl-CoA oxidase/dehydrogenase, central domain PF550_16115 IPR006089 Acyl-CoA dehydrogenase, conserved site PF550_16115 IPR036250 Acyl-CoA dehydrogenase-like, C-terminal PF550_16160 IPR004533 CDP-diacylglycerol--serine O-phosphatidyltransferase PF550_16160 IPR000462 CDP-alcohol phosphatidyltransferase PF550_16165 IPR007473 Ribosomal RNA large subunit methyltransferase J PF550_16165 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase PF550_16165 IPR002052 DNA methylase, N-6 adenine-specific, conserved site PF550_16185 IPR022383 Lactate/malate dehydrogenase, C-terminal PF550_16185 IPR001236 Lactate/malate dehydrogenase, N-terminal PF550_16185 IPR015955 Lactate dehydrogenase/glycoside hydrolase, family 4, C-terminal PF550_16185 IPR010945 Malate dehydrogenase, type 2 PF550_16185 IPR036291 NAD(P)-binding domain superfamily PF550_16185 IPR001557 L-lactate/malate dehydrogenase PF550_16195 IPR000189 Prokaryotic transglycosylase, active site PF550_16195 IPR008258 Transglycosylase SLT domain 1 PF550_16195 IPR023346 Lysozyme-like domain superfamily PF550_16195 IPR011055 Duplicated hybrid motif PF550_16195 IPR010090 Phage tail tape measure protein PF550_16195 IPR016047 Peptidase M23 PF550_16200 IPR006463 tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase MiaB PF550_16200 IPR002792 TRAM domain PF550_16200 IPR038135 Methylthiotransferase, N-terminal domain superfamily PF550_16200 IPR013848 Methylthiotransferase, N-terminal PF550_16200 IPR020612 Methylthiotransferase, conserved site PF550_16200 IPR005839 Methylthiotransferase PF550_16200 IPR006638 Elp3/MiaB/NifB PF550_16200 IPR007197 Radical SAM PF550_16200 IPR023404 Radical SAM, alpha/beta horseshoe PF550_16205 IPR027417 P-loop containing nucleoside triphosphate hydrolase PF550_16205 IPR003714 PhoH-like protein PF550_16210 IPR023091 Metalloprotease catalytic domain superfamily, predicted PF550_16210 IPR002036 Endoribonuclease YbeY PF550_16210 IPR020549 Endoribonuclease YbeY, conserved site PF550_16230 IPR000836 Phosphoribosyltransferase domain PF550_16230 IPR029057 Phosphoribosyltransferase-like PF550_16230 IPR010079 Xanthine phosphoribosyltransferase PF550_16235 IPR008254 Flavodoxin/nitric oxide synthase PF550_16235 IPR001226 Flavodoxin, conserved site PF550_16235 IPR029039 Flavoprotein-like superfamily PF550_16235 IPR010089 Flavoprotein WrbA-like PF550_16235 IPR005025 NADPH-dependent FMN reductase-like PF550_16240 IPR023679 Uncharacterised protein family UPF0761, bacterial PF550_16240 IPR017039 Virulence factor BrkB PF550_16245 IPR000620 EamA domain PF550_16250 IPR011051 RmlC-like cupin domain superfamily PF550_16250 IPR008917 Transcription factor, Skn-1-like, DNA-binding domain superfamily PF550_16250 IPR014710 RmlC-like jelly roll fold PF550_16250 IPR020449 Transcription regulator HTH, AraC- type PF550_16250 IPR018060 DNA binding HTH domain, AraC-type PF550_16250 IPR009057 Homeobox-like domain superfamily PF550_16250 IPR018062 HTH domain AraC-type, conserved site PF550_16255 IPR011234 Fumarylacetoacetase-like, C-terminal PF550_16255 IPR036663 Fumarylacetoacetase-like, C-terminal domain superfamily PF550_16300 IPR003029 S1 domain PF550_16300 IPR022967 RNA-binding domain, S1 PF550_16300 IPR013668 Ribonuclease R winged-helix domain PF550_16300 IPR011805 Ribonuclease R PF550_16300 IPR004476 Ribonuclease II/ribonuclease R PF550_16300 IPR040476 RNase II/RNase R, cold shock domain PF550_16300 IPR001900 Ribonuclease II/R PF550_16300 IPR013223 Ribonuclease B, N-terminal OB domain PF550_16300 IPR022966 Ribonuclease II/R, conserved site PF550_16300 IPR011129 Cold shock domain PF550_16300 IPR012340 Nucleic acid-binding, OB-fold PF550_16305 IPR001567 Peptidase M3A/M3B catalytic domain PF550_16305 IPR024077 Neurolysin/Thimet oligopeptidase, domain 2 PF550_16310 IPR012658 Conserved hypothetical protein CHP02443 PF550_16340 IPR005631 Flavinator of succinate dehydrogenase PF550_16340 IPR036714 Flavinator of succinate dehydrogenase superfamily PF550_16345 IPR006089 Acyl-CoA dehydrogenase, conserved site PF550_16345 IPR006091 Acyl-CoA oxidase/dehydrogenase, central domain PF550_16345 IPR036250 Acyl-CoA dehydrogenase-like, C-terminal PF550_16345 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal PF550_16345 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal PF550_16345 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily PF550_16345 IPR037069 Acyl-CoA dehydrogenase/oxidase, N-terminal domain superfamily PF550_16350 IPR036188 FAD/NAD(P)-binding domain superfamily PF550_16350 IPR020946 Flavin monooxygenase-like PF550_16355 IPR000456 Ribosomal protein L17 PF550_16355 IPR036373 Ribosomal protein L17 superfamily PF550_16360 IPR036643 DNA-directed RNA polymerase, insert domain superfamily PF550_16360 IPR011260 RNA polymerase, alpha subunit, C-terminal PF550_16360 IPR011263 DNA-directed RNA polymerase, RpoA/D/Rpb3-type PF550_16360 IPR011773 DNA-directed RNA polymerase, alpha subunit PF550_16360 IPR011262 DNA-directed RNA polymerase, insert domain PF550_16360 IPR036603 RNA polymerase, RBP11-like subunit PF550_16365 IPR036986 RNA-binding S4 domain superfamily PF550_16365 IPR002942 RNA-binding S4 domain PF550_16365 IPR022801 Ribosomal protein S4/S9 PF550_16365 IPR005709 Ribosomal protein S4, bacterial-type PF550_16365 IPR001912 Ribosomal protein S4/S9, N-terminal PF550_16365 IPR018079 Ribosomal protein S4, conserved site PF550_16370 IPR001971 Ribosomal protein S11 PF550_16370 IPR018102 Ribosomal S11, conserved site PF550_16370 IPR036967 Ribosomal protein S11 superfamily PF550_16370 IPR019981 Ribosomal protein S11, bacterial-type PF550_16375 IPR027437 30s ribosomal protein S13, C-terminal PF550_16375 IPR001892 Ribosomal protein S13 PF550_16375 IPR019980 Ribosomal protein S13, bacterial-type PF550_16375 IPR018269 Ribosomal protein S13, conserved site PF550_16375 IPR010979 Ribosomal protein S13-like, H2TH PF550_16380 IPR000473 Ribosomal protein L36 PF550_16380 IPR035977 Ribosomal protein L36 superfamily PF550_16385 IPR026593 Protein translocase subunit SecY PF550_16385 IPR002208 SecY/SEC61-alpha family PF550_16385 IPR030659 SecY conserved site PF550_16385 IPR023201 SecY domain superfamily PF550_16390 IPR036227 Ribosomal L18e/L15P superfamily PF550_16390 IPR005749 Ribosomal protein L15, bacterial-type PF550_16390 IPR001196 Ribosomal protein L15, conserved site PF550_16390 IPR021131 Ribosomal protein L18e/L15P PF550_16390 IPR030878 Ribosomal protein L15 PF550_16395 IPR036919 Ribosomal protein L30, ferredoxin-like fold domain superfamily PF550_16395 IPR005996 Ribosomal protein L30, bacterial-type PF550_16395 IPR016082 Ribosomal protein L30, ferredoxin-like fold domain PF550_16400 IPR013810 Ribosomal protein S5, N-terminal PF550_16400 IPR000851 Ribosomal protein S5 PF550_16400 IPR005712 Ribosomal protein S5, bacterial-type PF550_16400 IPR005324 Ribosomal protein S5, C-terminal PF550_16400 IPR020568 Ribosomal protein S5 domain 2-type fold PF550_16400 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup PF550_16400 IPR018192 Ribosomal protein S5, N-terminal, conserved site PF550_16405 IPR005484 Ribosomal protein L18 PF550_16405 IPR004389 Ribosomal protein L18, bacterial-type PF550_16410 IPR000702 Ribosomal protein L6 PF550_16410 IPR036789 Ribosomal protein L6, alpha-beta domain superfamily PF550_16410 IPR019906 Ribosomal protein L6, bacterial-type PF550_16410 IPR002358 Ribosomal protein L6, conserved site PF550_16410 IPR020040 Ribosomal protein L6, alpha-beta domain PF550_16415 IPR000630 Ribosomal protein S8 PF550_16415 IPR035987 Ribosomal protein S8 superfamily PF550_16420 IPR001209 Ribosomal protein S14 PF550_16420 IPR023036 Ribosomal protein S14, bacterial/plastid PF550_16420 IPR018271 Ribosomal protein S14, conserved site PF550_16425 IPR031309 Ribosomal protein L5, C-terminal PF550_16425 IPR020929 Ribosomal protein L5, conserved site PF550_16425 IPR022803 Ribosomal protein L5 domain superfamily PF550_16425 IPR002132 Ribosomal protein L5 PF550_16425 IPR031310 Ribosomal protein L5, N-terminal PF550_16425 IPR020930 Ribosomal protein L5, bacterial-type PF550_16430 IPR041988 Ribosomal Protein L26/L24, KOW domain PF550_16430 IPR014722 Ribosomal protein L2, domain 2 PF550_16430 IPR003256 Ribosomal protein L24 PF550_16430 IPR005825 Ribosomal protein L24/L26, conserved site PF550_16430 IPR008991 Translation protein SH3-like domain superfamily PF550_16430 IPR005824 KOW PF550_16435 IPR036853 Ribosomal protein L14 superfamily PF550_16435 IPR000218 Ribosomal protein L14P PF550_16435 IPR005745 Ribosomal protein L14P, bacterial-type PF550_16435 IPR019972 Ribosomal protein L14P, conserved site PF550_16440 IPR012340 Nucleic acid-binding, OB-fold PF550_16440 IPR019984 30S ribosomal protein S17 PF550_16440 IPR000266 Ribosomal protein S17/S11 PF550_16440 IPR019979 Ribosomal protein S17, conserved site PF550_16445 IPR036049 Ribosomal protein L29/L35 superfamily PF550_16445 IPR001854 Ribosomal protein L29/L35 PF550_16450 IPR020798 Ribosomal protein L16, conserved site PF550_16450 IPR000114 Ribosomal protein L16 PF550_16450 IPR036920 Ribosomal protein L10e/L16 superfamily PF550_16450 IPR016180 Ribosomal protein L10e/L16 PF550_16460 IPR005727 Ribosomal protein L22, bacterial/chloroplast-type PF550_16460 IPR036394 Ribosomal protein L22/L17 superfamily PF550_16460 IPR018260 Ribosomal protein L22/L17, conserved site PF550_16460 IPR001063 Ribosomal protein L22/L17 PF550_16465 IPR002222 Ribosomal protein S19/S15 PF550_16465 IPR005732 Ribosomal protein S19, bacterial-type PF550_16465 IPR020934 Ribosomal protein S19 conserved site PF550_16465 IPR023575 Ribosomal protein S19, superfamily PF550_16470 IPR014722 Ribosomal protein L2, domain 2 PF550_16470 IPR002171 Ribosomal protein L2 PF550_16470 IPR005880 Ribosomal protein L2, bacterial/organellar-type PF550_16470 IPR014726 Ribosomal protein L2, domain 3 PF550_16470 IPR022666 Ribosomal Proteins L2, RNA binding domain PF550_16470 IPR008991 Translation protein SH3-like domain superfamily PF550_16470 IPR022669 Ribosomal protein L2, C-terminal PF550_16470 IPR012340 Nucleic acid-binding, OB-fold PF550_16475 IPR012677 Nucleotide-binding alpha-beta plait domain superfamily PF550_16475 IPR012678 Ribosomal protein L23/L15e core domain superfamily PF550_16475 IPR013025 Ribosomal protein L25/L23 PF550_16480 IPR002136 Ribosomal protein L4/L1e PF550_16480 IPR023574 Ribosomal protein L4 domain superfamily PF550_16480 IPR013005 50S ribosomal protein uL4 PF550_16485 IPR009000 Translation protein, beta-barrel domain superfamily PF550_16485 IPR019926 Ribosomal protein L3, conserved site PF550_16485 IPR019927 Ribosomal protein L3, bacterial/organelle-type PF550_16485 IPR000597 Ribosomal protein L3 PF550_16490 IPR027486 Ribosomal protein S10 domain PF550_16490 IPR018268 Ribosomal protein S10, conserved site PF550_16490 IPR001848 Ribosomal protein S10 PF550_16490 IPR036838 Ribosomal protein S10 domain superfamily PF550_16495 IPR029062 Class I glutamine amidotransferase-like PF550_16495 IPR017926 Glutamine amidotransferase PF550_16500 IPR000277 Cys/Met metabolism, pyridoxal phosphate-dependent enzyme PF550_16500 IPR006233 Cystathionine beta-lyase, bacterial PF550_16500 IPR015424 Pyridoxal phosphate-dependent transferase PF550_16500 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 PF550_16500 IPR015421 Pyridoxal phosphate-dependent transferase, major domain PF550_16505 IPR033186 Helicase HerA-like C-terminal PF550_16505 IPR027417 P-loop containing nucleoside triphosphate hydrolase PF550_16515 IPR017938 Riboflavin synthase-like beta-barrel PF550_16515 IPR023950 Flavohemoprotein PF550_16515 IPR008333 Flavoprotein pyridine nucleotide cytochrome reductase-like, FAD-binding domain PF550_16515 IPR017927 FAD-binding domain, ferredoxin reductase-type PF550_16515 IPR039261 Ferredoxin-NADP reductase (FNR), nucleotide-binding domain PF550_16515 IPR000971 Globin PF550_16515 IPR009050 Globin-like superfamily PF550_16515 IPR012292 Globin/Protoglobin PF550_16515 IPR001433 Oxidoreductase FAD/NAD(P)-binding PF550_16520 IPR036388 Winged helix-like DNA-binding domain superfamily PF550_16520 IPR023761 Transcriptional repressor HTH, NsrR PF550_16520 IPR000944 Transcription regulator Rrf2-type PF550_16520 IPR030489 Transcription regulator Rrf2-type, conserved site PF550_16520 IPR036390 Winged helix DNA-binding domain superfamily PF550_16525 IPR030393 EngB-type guanine nucleotide-binding (G) domain PF550_16525 IPR019987 GTP-binding protein, ribosome biogenesis, YsxC PF550_16525 IPR027417 P-loop containing nucleoside triphosphate hydrolase PF550_16525 IPR006073 GTP binding domain PF550_16535 IPR036458 Sodium:dicarboxylate symporter superfamily PF550_16535 IPR018107 Sodium:dicarboxylate symporter, conserved site PF550_16535 IPR001991 Sodium:dicarboxylate symporter PF550_16535 IPR033380 Glutamate-aspartate symport protein GltP/GltT PF550_16535 IPR034703 Proton/glutamate-aspartate symporter GltP PF550_16540 IPR003703 Acyl-CoA thioesterase PF550_16540 IPR029069 HotDog domain superfamily PF550_16545 IPR041728 GPAT/DHAPAT, acyltransferase domain PF550_16545 IPR028354 Glycerol-3-phosphate acyltransferase, PlsB PF550_16545 IPR002123 Phospholipid/glycerol acyltransferase PF550_16545 IPR022284 Glycerol-3-phosphate O-acyltransferase/Dihydroxyacetone phosphate acyltransferase PF550_16550 IPR038404 TRAP transporter solute receptor DctP superfamily PF550_16560 IPR027417 P-loop containing nucleoside triphosphate hydrolase PF550_16560 IPR001650 Helicase, C-terminal PF550_16560 IPR033454 RecG, wedge domain PF550_16560 IPR011545 DEAD/DEAH box helicase domain PF550_16560 IPR014001 Helicase superfamily 1/2, ATP-binding domain PF550_16560 IPR012340 Nucleic acid-binding, OB-fold PF550_16560 IPR004609 ATP-dependent DNA helicase RecG PF550_16565 IPR005222 Competence protein ComF PF550_16565 IPR000836 Phosphoribosyltransferase domain PF550_16565 IPR029057 Phosphoribosyltransferase-like PF550_16570 IPR020476 NUDIX hydrolase PF550_16570 IPR015797 NUDIX hydrolase-like domain superfamily PF550_16570 IPR020084 NUDIX hydrolase, conserved site PF550_16570 IPR000086 NUDIX hydrolase domain PF550_16575 IPR031100 LOG family PF550_16575 IPR005269 Cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG PF550_16580 IPR002523 Mg2+ transporter protein, CorA-like/Zinc transport protein ZntB PF550_16580 IPR004488 Magnesium/cobalt transport protein CorA PF550_16590 IPR008869 Toluene tolerance Ttg2/phospholipid-binding protein MlaC PF550_16590 IPR042245 Tgt2/MlaC superfamily PF550_16600 IPR003453 ABC transport permease subunit MlaE, Proteobacteria PF550_16600 IPR030802 ABC transporter permease MalE PF550_16605 IPR003593 AAA+ ATPase domain PF550_16605 IPR003439 ABC transporter-like PF550_16605 IPR017871 ABC transporter, conserved site PF550_16605 IPR030296 Probable ABC transporter ATP-binding protein MlaF/Mkl PF550_16605 IPR027417 P-loop containing nucleoside triphosphate hydrolase PF550_16615 IPR001650 Helicase, C-terminal PF550_16615 IPR000629 ATP-dependent RNA helicase DEAD-box, conserved site PF550_16615 IPR014001 Helicase superfamily 1/2, ATP-binding domain PF550_16615 IPR028618 ATP-dependent RNA helicase DeaD PF550_16615 IPR011545 DEAD/DEAH box helicase domain PF550_16615 IPR005580 DEAD box helicase DbpA/CsdA, RNA-binding domain PF550_16615 IPR034415 CsdA, RNA recognition motif PF550_16615 IPR021046 Cold-shock protein, DEAD box A, C-terminal PF550_16615 IPR027417 P-loop containing nucleoside triphosphate hydrolase PF550_16615 IPR012677 Nucleotide-binding alpha-beta plait domain superfamily PF550_16615 IPR014014 RNA helicase, DEAD-box type, Q motif PF550_16620 IPR000760 Inositol monophosphatase-like PF550_16620 IPR020550 Inositol monophosphatase, conserved site PF550_16620 IPR033942 Inositol monophosphatase PF550_16620 IPR022337 Inositol monophosphatase, SuhB PF550_16620 IPR020583 Inositol monophosphatase, metal-binding site PF550_16625 IPR005475 Transketolase-like, pyrimidine-binding domain PF550_16625 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II PF550_16625 IPR020826 Transketolase binding site PF550_16625 IPR005477 Deoxyxylulose-5-phosphate synthase PF550_16625 IPR033248 Transketolase, C-terminal domain PF550_16625 IPR029061 Thiamin diphosphate-binding fold PF550_16630 IPR036144 RibA-like superfamily PF550_16630 IPR032677 GTP cyclohydrolase II PF550_16630 IPR000926 GTP cyclohydrolase II, RibA PF550_16635 IPR018375 Coproporphyrinogen III oxidase, conserved site PF550_16635 IPR036406 Oxygen-dependent coproporphyrinogen III oxidase superfamily PF550_16635 IPR001260 Coproporphyrinogen III oxidase, aerobic PF550_16640 IPR022893 Shikimate dehydrogenase family PF550_16640 IPR036291 NAD(P)-binding domain superfamily PF550_16640 IPR041121 SDH, C-terminal PF550_16640 IPR011342 Shikimate dehydrogenase PF550_16640 IPR013708 Shikimate dehydrogenase substrate binding, N-terminal PF550_16640 IPR006151 Quinate/shikimate 5-dehydrogenase/glutamyl-tRNA reductase PF550_16650 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily PF550_16650 IPR037069 Acyl-CoA dehydrogenase/oxidase, N-terminal domain superfamily PF550_16650 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal PF550_16650 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal PF550_16650 IPR006091 Acyl-CoA oxidase/dehydrogenase, central domain PF550_16650 IPR025878 Acetyl-CoA dehydrogenase-like C-terminal domain PF550_16650 IPR036250 Acyl-CoA dehydrogenase-like, C-terminal PF550_16660 IPR007168 Phage shock protein, PspC, N-terminal PF550_16665 IPR000644 CBS domain PF550_16680 IPR005829 Sugar transporter, conserved site PF550_16680 IPR011701 Major facilitator superfamily PF550_16680 IPR020846 Major facilitator superfamily domain PF550_16680 IPR036259 MFS transporter superfamily PF550_16680 IPR001958 Tetracycline resistance protein TetA/multidrug resistance protein MdtG PF550_16680 IPR004734 Multidrug resistance protein PF550_16685 IPR006194 Glycine-tRNA synthetase, heterodimeric PF550_16685 IPR002310 Glycine-tRNA ligase, alpha subunit PF550_16690 IPR015944 Glycine-tRNA ligase, beta subunit PF550_16690 IPR006194 Glycine-tRNA synthetase, heterodimeric PF550_16690 IPR008909 DALR anticodon binding PF550_16700 IPR025668 Transposase DDE domain PF550_16720 IPR000620 EamA domain PF550_16725 IPR005119 LysR, substrate-binding PF550_16725 IPR000847 Transcription regulator HTH, LysR PF550_16725 IPR036388 Winged helix-like DNA-binding domain superfamily PF550_16725 IPR036390 Winged helix DNA-binding domain superfamily PF550_16740 IPR037045 Peptidase S8 propeptide/proteinase inhibitor I9 superfamily PF550_16740 IPR010259 Peptidase S8 propeptide/proteinase inhibitor I9 PF550_16740 IPR015500 Peptidase S8, subtilisin-related PF550_16740 IPR034202 Subtilisin Carlsberg-like catalytic domain PF550_16740 IPR022398 Peptidase S8, subtilisin, His-active site PF550_16740 IPR023827 Peptidase S8, subtilisin, Asp-active site PF550_16740 IPR036852 Peptidase S8/S53 domain superfamily PF550_16740 IPR000209 Peptidase S8/S53 domain PF550_16740 IPR023828 Peptidase S8, subtilisin, Ser-active site PF550_16755 IPR007036 Succinylglutamate desuccinylase/aspartoacylase PF550_16755 IPR016681 Succinylglutamate desuccinylase PF550_16760 IPR037031 Succinylarginine dihydrolase superfamily PF550_16760 IPR007079 Succinylarginine dihydrolase PF550_16765 IPR017649 Succinylglutamate-semialdehyde dehydrogenase PF550_16765 IPR015590 Aldehyde dehydrogenase domain PF550_16765 IPR016162 Aldehyde dehydrogenase, N-terminal PF550_16765 IPR029510 Aldehyde dehydrogenase, glutamic acid active site PF550_16765 IPR016160 Aldehyde dehydrogenase, cysteine active site PF550_16765 IPR016161 Aldehyde/histidinol dehydrogenase PF550_16765 IPR016163 Aldehyde dehydrogenase, C-terminal PF550_16770 IPR016181 Acyl-CoA N-acyltransferase PF550_16770 IPR007041 Arginine N-succinyltransferase AstA/AruG PF550_16770 IPR017650 Arginine N-succinyltransferase PF550_16775 IPR017652 Acetyl/Succinylornithine transaminase family, bacteria PF550_16775 IPR004636 Acetylornithine/Succinylornithine transaminase family PF550_16775 IPR005814 Aminotransferase class-III PF550_16775 IPR015424 Pyridoxal phosphate-dependent transferase PF550_16775 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 PF550_16775 IPR015421 Pyridoxal phosphate-dependent transferase, major domain PF550_16775 IPR026330 Succinylornithine transaminase PF550_16780 IPR006095 Glutamate/phenylalanine/leucine/valine dehydrogenase PF550_16780 IPR033524 Leu/Phe/Val dehydrogenases active site PF550_16780 IPR014362 Glutamate dehydrogenase PF550_16780 IPR006097 Glutamate/phenylalanine/leucine/valine dehydrogenase, dimerisation domain PF550_16780 IPR036291 NAD(P)-binding domain superfamily PF550_16780 IPR033922 NAD(P) binding domain of glutamate dehydrogenase PF550_16780 IPR006096 Glutamate/phenylalanine/leucine/valine dehydrogenase, C-terminal PF550_16785 IPR004841 Amino acid permease/ SLC12A domain PF550_16785 IPR004840 Amino acid permease, conserved site PF550_16795 IPR013216 Methyltransferase type 11 PF550_16795 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase PF550_16815 IPR025669 AAA domain PF550_16815 IPR027417 P-loop containing nucleoside triphosphate hydrolase PF550_16820 IPR002549 Transmembrane protein TqsA-like PF550_16825 IPR001424 Superoxide dismutase, copper/zinc binding domain PF550_16825 IPR036423 Superoxide dismutase-like, copper/zinc binding domain superfamily PF550_16825 IPR024134 Superoxide dismutase (Cu/Zn) / superoxide dismutase copper chaperone PF550_16825 IPR018152 Superoxide dismutase, copper/zinc, binding site PF550_16830 IPR010020 Integral membrane protein, YccS/YhfK PF550_16830 IPR032692 Integral membrane protein YccS, N-terminal PF550_16830 IPR010019 Integral membrane protein, YccS PF550_16835 IPR011701 Major facilitator superfamily PF550_16835 IPR020846 Major facilitator superfamily domain PF550_16835 IPR036259 MFS transporter superfamily PF550_16835 IPR005829 Sugar transporter, conserved site PF550_16845 IPR003680 Flavodoxin-like fold PF550_16845 IPR029039 Flavoprotein-like superfamily PF550_16850 IPR011008 Dimeric alpha-beta barrel PF550_16850 IPR007138 Antibiotic biosynthesis monooxygenase domain PF550_16865 IPR036318 FAD-binding, type PCMH-like superfamily PF550_16865 IPR016164 FAD-linked oxidase-like, C-terminal PF550_16865 IPR004113 FAD-linked oxidase, C-terminal PF550_16865 IPR004490 Glycolate oxidase subunit GlcD PF550_16865 IPR006094 FAD linked oxidase, N-terminal PF550_16865 IPR016171 Vanillyl-alcohol oxidase, C-terminal subdomain 2 PF550_16865 IPR016166 FAD-binding domain, PCMH-type PF550_16870 IPR002912 ACT domain PF550_16870 IPR006139 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain PF550_16870 IPR029753 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain conserved site PF550_16870 IPR029752 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain conserved site 1 PF550_16870 IPR036291 NAD(P)-binding domain superfamily PF550_16870 IPR006140 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain PF550_16875 IPR000620 EamA domain PF550_16880 IPR000620 EamA domain PF550_16890 IPR002781 Transmembrane protein TauE-like PF550_16895 IPR002501 Pseudouridine synthase II, N-terminal PF550_16895 IPR020103 Pseudouridine synthase, catalytic domain superfamily PF550_16895 IPR014780 tRNA pseudouridine synthase II, TruB PF550_16895 IPR015240 tRNA pseudouridine synthase II, TruB, subfamily 1, C-terminal PF550_16895 IPR032819 tRNA pseudouridylate synthase B, C-terminal PF550_16895 IPR015947 PUA-like superfamily PF550_16900 IPR004961 Lipase chaperone PF550_16905 IPR000073 Alpha/beta hydrolase fold-1 PF550_16905 IPR029058 Alpha/Beta hydrolase fold PF550_16910 IPR018257 Ribosomal protein L19, conserved site PF550_16910 IPR001857 Ribosomal protein L19 PF550_16910 IPR038657 Ribosomal protein L19 superfamily PF550_16910 IPR008991 Translation protein SH3-like domain superfamily PF550_16915 IPR029028 Alpha/beta knot methyltransferases PF550_16915 IPR002649 tRNA (guanine-N1-)-methyltransferase, bacteria PF550_16915 IPR023148 tRNA (guanine-N1-)-methyltransferase, C-terminal PF550_16915 IPR029026 tRNA (guanine-N1-)-methyltransferase, N-terminal PF550_16915 IPR016009 tRNA methyltransferase TRMD/TRM10-type domain PF550_16920 IPR002676 RimM, N-terminal PF550_16920 IPR009000 Translation protein, beta-barrel domain superfamily PF550_16920 IPR011961 16S rRNA processing protein RimM PF550_16920 IPR027275 PRC-barrel domain PF550_16920 IPR011033 PRC-barrel-like superfamily PF550_16920 IPR036976 RimM, N-terminal domain superfamily PF550_16925 IPR000307 Ribosomal protein S16 PF550_16925 IPR020592 Ribosomal protein S16, conserved site PF550_16925 IPR023803 Ribosomal protein S16 domain superfamily PF550_16965 IPR003451 4-hydroxy-3-methylbut-2-enyl diphosphate reductase PF550_16970 IPR008145 Guanylate kinase/L-type calcium channel beta subunit PF550_16970 IPR008144 Guanylate kinase-like domain PF550_16970 IPR017665 Guanylate kinase PF550_16970 IPR020590 Guanylate kinase, conserved site PF550_16970 IPR027417 P-loop containing nucleoside triphosphate hydrolase PF550_16975 IPR003716 DNA-directed RNA polymerase, omega subunit PF550_16975 IPR012293 RNA polymerase subunit, RPB6/omega PF550_16975 IPR006110 RNA polymerase, subunit omega/K/RPB6 PF550_16975 IPR036161 RPB6/omega subunit-like superfamily PF550_16985 IPR033655 RelA, TGS domain PF550_16985 IPR004811 RelA/SpoT family PF550_16985 IPR004095 TGS PF550_16985 IPR002912 ACT domain PF550_16985 IPR012676 TGS-like PF550_16985 IPR003607 HD/PDEase domain PF550_16985 IPR007685 RelA/SpoT PF550_16985 IPR012675 Beta-grasp domain superfamily PF550_16990 IPR035959 RutC-like superfamily PF550_16990 IPR019897 RidA, conserved site PF550_16990 IPR006056 RidA family PF550_16990 IPR006175 YjgF/YER057c/UK114 family PF550_16995 IPR007419 BFD-like [2Fe-2S]-binding domain PF550_16995 IPR041854 BFD-like [2Fe-2S]-binding domain superfamily PF550_17000 IPR012347 Ferritin-like PF550_17000 IPR009040 Ferritin-like diiron domain PF550_17000 IPR009078 Ferritin-like superfamily PF550_17000 IPR008331 Ferritin/DPS protein domain PF550_17000 IPR002024 Bacterioferritin PF550_17005 IPR007016 O-antigen ligase-related PF550_17005 IPR031726 Protein glycosylation ligase domain PF550_17005 IPR021797 Virulence factor membrane-bound polymerase, C-terminal PF550_17015 IPR012902 Prokaryotic N-terminal methylation site PF550_17015 IPR000983 Bacterial general secretion pathway protein G-type pilin PF550_17015 IPR001082 Fimbrial protein pilin PF550_17025 IPR007621 TPM domain PF550_17030 IPR007156 LemA PF550_17030 IPR023353 LemA-like domain superfamily PF550_17040 IPR028261 Dihydroprymidine dehydrogenase domain II PF550_17040 IPR036188 FAD/NAD(P)-binding domain superfamily PF550_17040 IPR023753 FAD/NAD(P)-binding domain PF550_17040 IPR006006 Glutamate synthase, NADH/NADPH, small subunit 2 PF550_17040 IPR009051 Alpha-helical ferredoxin PF550_17045 IPR017932 Glutamine amidotransferase type 2 domain PF550_17045 IPR002489 Glutamate synthase, alpha subunit, C-terminal PF550_17045 IPR036485 Glutamate synthase, alpha subunit, C-terminal domain superfamily PF550_17045 IPR006982 Glutamate synthase, central-N PF550_17045 IPR002932 Glutamate synthase domain PF550_17045 IPR029055 Nucleophile aminohydrolases, N-terminal PF550_17045 IPR013785 Aldolase-type TIM barrel PF550_17055 IPR016037 3-dehydroquinate synthase AroB PF550_17055 IPR030963 3-dehydroquinate synthase family PF550_17055 IPR030960 3-dehydroquinate synthase domain PF550_17060 IPR027417 P-loop containing nucleoside triphosphate hydrolase PF550_17060 IPR031322 Shikimate kinase/gluconokinase PF550_17060 IPR000623 Shikimate kinase/Threonine synthase-like 1 PF550_17060 IPR023000 Shikimate kinase, conserved site PF550_17065 IPR021731 AMIN domain PF550_17065 IPR001775 GspD/PilQ family PF550_17065 IPR005644 NolW-like PF550_17065 IPR038591 NolW-like superfamily PF550_17065 IPR013355 Type IV pilus secretin PilQ PF550_17065 IPR011662 Secretin/TonB, short N-terminal domain PF550_17065 IPR004846 Type II/III secretion system PF550_17065 IPR004845 Type II secretion system GspD, conserved site PF550_17075 IPR007445 Pilus assembly protein, PilO PF550_17075 IPR014717 Translation elongation factor EF1B/ribosomal protein S6 PF550_17080 IPR007813 Fimbrial assembly PilN PF550_17085 IPR003494 SHS2 domain inserted in FtsA PF550_17085 IPR005883 Type IV pilus assembly protein PilM PF550_17090 IPR001460 Penicillin-binding protein, transpeptidase PF550_17090 IPR031376 Penicillin-binding protein, OB-like domain PF550_17090 IPR012338 Beta-lactamase/transpeptidase-like PF550_17090 IPR023346 Lysozyme-like domain superfamily PF550_17090 IPR001264 Glycosyl transferase, family 51 PF550_17090 IPR036950 Penicillin binding protein transglycosylase domain PF550_17095 IPR025714 Methyltransferase domain PF550_17095 IPR016718 rRNA (guanine-N1-)-methyltransferase A, predicted PF550_17095 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase PF550_17105 IPR000715 Glycosyl transferase, family 4 PF550_17105 IPR003524 Phospho-N-acetylmuramoyl-pentapeptide transferase PF550_17105 IPR018480 Phospho-N-acetylmuramoyl-pentapeptide transferase, conserved site PF550_17110 IPR013221 Mur ligase, central PF550_17110 IPR036565 Mur-like, catalytic domain superfamily PF550_17110 IPR004101 Mur ligase, C-terminal PF550_17110 IPR036615 Mur ligase, C-terminal domain superfamily PF550_17110 IPR000713 Mur ligase, N-terminal catalytic domain PF550_17110 IPR005863 UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase PF550_17110 IPR035911 MurE/MurF, N-terminal PF550_17115 IPR004101 Mur ligase, C-terminal PF550_17115 IPR036615 Mur ligase, C-terminal domain superfamily PF550_17115 IPR013221 Mur ligase, central PF550_17115 IPR000713 Mur ligase, N-terminal catalytic domain PF550_17115 IPR035911 MurE/MurF, N-terminal PF550_17115 IPR005761 UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase PF550_17115 IPR036565 Mur-like, catalytic domain superfamily PF550_17120 IPR037532 Peptidoglycan D,D-transpeptidase FtsI PF550_17120 IPR005311 Penicillin-binding protein, dimerisation domain PF550_17120 IPR036138 Penicillin-binding protein, dimerisation domain superfamily PF550_17120 IPR001460 Penicillin-binding protein, transpeptidase PF550_17120 IPR012338 Beta-lactamase/transpeptidase-like PF550_17130 IPR002903 Ribosomal RNA small subunit methyltransferase H PF550_17130 IPR023397 S-adenosyl-L-methionine-dependent methyltransferase, MraW, recognition domain superfamily PF550_17130 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase PF550_17135 IPR005669 Thiosulphate/Sulfate-binding protein PF550_17135 IPR034408 Sulphate/thiosulphate-binding site PF550_17135 IPR000957 Sulphate/thiosulphate-binding, conserved site PF550_17145 IPR008925 Aminoacyl-tRNA synthetase, class I, anticodon-binding PF550_17145 IPR020751 Aminoacyl-tRNA synthetase, class I, anticodon-binding domain, subdomain 2 PF550_17145 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site PF550_17145 IPR004527 Glutamate-tRNA ligase, bacterial/mitochondrial PF550_17145 IPR000924 Glutamyl/glutaminyl-tRNA synthetase PF550_17145 IPR020058 Glutamyl/glutaminyl-tRNA synthetase, class Ib, catalytic domain PF550_17145 IPR033910 Glutamyl-tRNA synthetase PF550_17145 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold PF550_17160 IPR004840 Amino acid permease, conserved site PF550_17160 IPR004841 Amino acid permease/ SLC12A domain PF550_17190 IPR002524 Cation efflux protein PF550_17190 IPR036837 Cation efflux protein, cytoplasmic domain superfamily PF550_17190 IPR027469 Cation efflux transmembrane domain superfamily PF550_17195 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains PF550_17195 IPR004763 Cation efflux system CzcA/CusA/SilA/NccA/HelA/CnrA PF550_17195 IPR001036 Acriflavin resistance protein PF550_17200 IPR005695 Cobalt/zinc/cadmium resistance protein CzcB PF550_17200 IPR006143 RND efflux pump, membrane fusion protein PF550_17200 IPR032317 RND efflux pump, membrane fusion protein, barrel-sandwich domain PF550_17225 IPR003593 AAA+ ATPase domain PF550_17225 IPR032781 ABC-transporter extension domain PF550_17225 IPR003439 ABC transporter-like PF550_17225 IPR017871 ABC transporter, conserved site PF550_17225 IPR022374 Energy-dependent translational throttle protein EttA PF550_17225 IPR027417 P-loop containing nucleoside triphosphate hydrolase PF550_17230 IPR000277 Cys/Met metabolism, pyridoxal phosphate-dependent enzyme PF550_17230 IPR006235 O-acetylhomoserine/O-acetylserine sulfhydrylase PF550_17230 IPR015424 Pyridoxal phosphate-dependent transferase PF550_17230 IPR015421 Pyridoxal phosphate-dependent transferase, major domain PF550_17230 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 PF550_17235 IPR002347 Short-chain dehydrogenase/reductase SDR PF550_17235 IPR020904 Short-chain dehydrogenase/reductase, conserved site PF550_17235 IPR036291 NAD(P)-binding domain superfamily PF550_17240 IPR036513 STAS domain superfamily PF550_17240 IPR002645 STAS domain PF550_17240 IPR001902 SLC26A/SulP transporter PF550_17240 IPR011547 SLC26A/SulP transporter domain PF550_17245 IPR037027 YqgF/RNase H-like domain superfamily PF550_17245 IPR006641 YqgF/RNase H-like domain PF550_17245 IPR032639 Tex protein, YqgF-like domain PF550_17245 IPR018974 Tex-like protein, N-terminal PF550_17245 IPR023319 Tex-like protein, HTH domain superfamily PF550_17245 IPR010994 RuvA domain 2-like PF550_17245 IPR003029 S1 domain PF550_17245 IPR041692 HHH domain 9 PF550_17245 IPR012340 Nucleic acid-binding, OB-fold PF550_17245 IPR012337 Ribonuclease H-like superfamily PF550_17245 IPR022967 RNA-binding domain, S1 PF550_17245 IPR023323 Tex-like domain superfamily PF550_17250 IPR011006 CheY-like superfamily PF550_17250 IPR016032 Signal transduction response regulator, C-terminal effector PF550_17250 IPR001789 Signal transduction response regulator, receiver domain PF550_17250 IPR039420 Transcriptional regulatory protein WalR-like PF550_17250 IPR036388 Winged helix-like DNA-binding domain superfamily PF550_17250 IPR001867 OmpR/PhoB-type DNA-binding domain PF550_17255 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain PF550_17255 IPR003594 Histidine kinase/HSP90-like ATPase PF550_17255 IPR003660 HAMP domain PF550_17255 IPR004358 Signal transduction histidine kinase-related protein, C-terminal PF550_17255 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily PF550_17255 IPR005467 Histidine kinase domain PF550_17255 IPR036890 Histidine kinase/HSP90-like ATPase superfamily PF550_17265 IPR017821 Succinate CoA transferase PF550_17265 IPR038460 Acetyl-CoA hydrolase/transferase, C-terminal domain superfamily PF550_17265 IPR026888 Acetyl-CoA hydrolase/transferase C-terminal domain PF550_17265 IPR037171 NagB/RpiA transferase-like PF550_17265 IPR003702 Acetyl-CoA hydrolase/transferase PF550_17270 IPR023072 Acetyltransferase, YpeA PF550_17270 IPR000182 GNAT domain PF550_17270 IPR017255 Acetyltransferase, GNAT, predicted PF550_17270 IPR016181 Acyl-CoA N-acyltransferase PF550_17290 IPR038494 Imidazole glycerol phosphate dehydratase domain superfamily PF550_17290 IPR000807 Imidazoleglycerol-phosphate dehydratase PF550_17290 IPR020568 Ribosomal protein S5 domain 2-type fold PF550_17290 IPR020565 Imidazoleglycerol-phosphate dehydratase, conserved site PF550_17295 IPR017926 Glutamine amidotransferase PF550_17295 IPR010139 Imidazole glycerol phosphate synthase, subunit H PF550_17295 IPR029062 Class I glutamine amidotransferase-like PF550_17310 IPR013785 Aldolase-type TIM barrel PF550_17310 IPR006062 Histidine biosynthesis PF550_17310 IPR006063 Phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase HisA PF550_17310 IPR023016 Phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase PF550_17310 IPR011060 Ribulose-phosphate binding barrel PF550_17345 IPR011009 Protein kinase-like domain superfamily PF550_17345 IPR005280 Homoserine kinase, type II PF550_17345 IPR002575 Aminoglycoside phosphotransferase PF550_17350 IPR013785 Aldolase-type TIM barrel PF550_17350 IPR006062 Histidine biosynthesis PF550_17350 IPR004651 Histidine biosynthesis, HisF PF550_17350 IPR011060 Ribulose-phosphate binding barrel PF550_17365 IPR023271 Aquaporin-like PF550_17365 IPR034294 Aquaporin transporter PF550_17365 IPR023743 Aquaporin Z PF550_17365 IPR000425 Major intrinsic protein PF550_17365 IPR022357 Major intrinsic protein, conserved site PF550_17390 IPR003855 Potassium transporter PF550_17390 IPR023051 Potassium uptake protein, low affinity, Kup PF550_17405 IPR003680 Flavodoxin-like fold PF550_17405 IPR029039 Flavoprotein-like superfamily PF550_17410 IPR011991 ArsR-like helix-turn-helix domain PF550_17410 IPR002577 Helix-turn-helix, HxlR type PF550_17410 IPR036388 Winged helix-like DNA-binding domain superfamily PF550_17410 IPR036390 Winged helix DNA-binding domain superfamily PF550_17435 IPR009057 Homeobox-like domain superfamily PF550_17435 IPR037923 Transcription regulator HTH-like PF550_17435 IPR020449 Transcription regulator HTH, AraC- type PF550_17435 IPR023699 Transcription activator HTH, RhaR PF550_17435 IPR014710 RmlC-like jelly roll fold PF550_17435 IPR018062 HTH domain AraC-type, conserved site PF550_17435 IPR018060 DNA binding HTH domain, AraC-type PF550_17435 IPR003313 AraC-type arabinose-binding/dimerisation domain PF550_17440 IPR020471 Aldo/keto reductase PF550_17440 IPR018170 Aldo/keto reductase, conserved site PF550_17440 IPR036812 NADP-dependent oxidoreductase domain superfamily PF550_17440 IPR023210 NADP-dependent oxidoreductase domain PF550_17460 IPR036388 Winged helix-like DNA-binding domain superfamily PF550_17460 IPR036390 Winged helix DNA-binding domain superfamily PF550_17460 IPR005119 LysR, substrate-binding PF550_17460 IPR000847 Transcription regulator HTH, LysR PF550_17465 IPR020846 Major facilitator superfamily domain PF550_17465 IPR036259 MFS transporter superfamily PF550_17465 IPR005829 Sugar transporter, conserved site PF550_17465 IPR011701 Major facilitator superfamily PF550_17485 IPR002937 Amine oxidase PF550_17485 IPR014105 Carotenoid/retinoid oxidoreductase PF550_17485 IPR036188 FAD/NAD(P)-binding domain superfamily PF550_17495 IPR012093 Pirin PF550_17495 IPR011051 RmlC-like cupin domain superfamily PF550_17495 IPR014710 RmlC-like jelly roll fold PF550_17495 IPR008778 Pirin, C-terminal domain PF550_17495 IPR003829 Pirin, N-terminal domain PF550_17500 IPR000868 Isochorismatase-like PF550_17500 IPR036380 Isochorismatase-like superfamily PF550_17505 IPR036390 Winged helix DNA-binding domain superfamily PF550_17505 IPR036388 Winged helix-like DNA-binding domain superfamily PF550_17505 IPR000847 Transcription regulator HTH, LysR PF550_17510 IPR029510 Aldehyde dehydrogenase, glutamic acid active site PF550_17510 IPR015590 Aldehyde dehydrogenase domain PF550_17510 IPR016160 Aldehyde dehydrogenase, cysteine active site PF550_17510 IPR016163 Aldehyde dehydrogenase, C-terminal PF550_17510 IPR010102 Succinate semialdehyde dehydrogenase PF550_17510 IPR016161 Aldehyde/histidinol dehydrogenase PF550_17510 IPR016162 Aldehyde dehydrogenase, N-terminal PF550_17515 IPR015424 Pyridoxal phosphate-dependent transferase PF550_17515 IPR015421 Pyridoxal phosphate-dependent transferase, major domain PF550_17515 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 PF550_17515 IPR004632 4-aminobutyrate aminotransferase, bacterial PF550_17515 IPR005814 Aminotransferase class-III PF550_17520 IPR036390 Winged helix DNA-binding domain superfamily PF550_17520 IPR000524 Transcription regulator HTH, GntR PF550_17520 IPR015421 Pyridoxal phosphate-dependent transferase, major domain PF550_17520 IPR015424 Pyridoxal phosphate-dependent transferase PF550_17520 IPR036388 Winged helix-like DNA-binding domain superfamily PF550_17520 IPR004839 Aminotransferase, class I/classII PF550_17525 IPR004840 Amino acid permease, conserved site PF550_17525 IPR011265 GABA permease PF550_17525 IPR004841 Amino acid permease/ SLC12A domain PF550_17535 IPR004471 Branched-chain amino acid transport, AzlC PF550_17535 IPR011606 Branched-chain amino acid transport, permease PF550_17545 IPR012340 Nucleic acid-binding, OB-fold PF550_17545 IPR000424 Primosome PriB/single-strand DNA-binding PF550_17545 IPR011344 Single-stranded DNA-binding protein PF550_17550 IPR011701 Major facilitator superfamily PF550_17550 IPR020846 Major facilitator superfamily domain PF550_17550 IPR036259 MFS transporter superfamily PF550_17560 IPR004399 Hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase PF550_17560 IPR013749 Pyridoxamine kinase/Phosphomethylpyrimidine kinase PF550_17560 IPR036206 Thiamin phosphate synthase superfamily PF550_17560 IPR016084 Haem oxygenase-like, multi-helical PF550_17560 IPR004305 Thiaminase-2/PQQC PF550_17560 IPR029056 Ribokinase-like PF550_17560 IPR013785 Aldolase-type TIM barrel PF550_17560 IPR022998 Thiamine phosphate synthase/TenI PF550_17560 IPR034291 Thiamine phosphate synthase PF550_17565 IPR009707 Membrane protein GlpM/YdgC PF550_17575 IPR020843 Polyketide synthase, enoylreductase domain PF550_17575 IPR036291 NAD(P)-binding domain superfamily PF550_17575 IPR011032 GroES-like superfamily PF550_17575 IPR013154 Alcohol dehydrogenase, N-terminal PF550_17575 IPR002364 Quinone oxidoreductase/zeta-crystallin, conserved site PF550_17575 IPR013149 Alcohol dehydrogenase, C-terminal PF550_17580 IPR036271 Tetracyclin repressor-like, C-terminal domain superfamily PF550_17580 IPR009057 Homeobox-like domain superfamily PF550_17580 IPR001647 DNA-binding HTH domain, TetR-type PF550_17580 IPR011075 Tetracyclin repressor-like, C-terminal domain PF550_17585 IPR017871 ABC transporter, conserved site PF550_17585 IPR003439 ABC transporter-like PF550_17585 IPR041552 UvrA DNA-binding domain PF550_17585 IPR004602 UvrABC system subunit A PF550_17585 IPR041102 UvrA, interaction domain PF550_17585 IPR027417 P-loop containing nucleoside triphosphate hydrolase PF550_17590 IPR000160 GGDEF domain PF550_17590 IPR029787 Nucleotide cyclase PF550_17600 IPR000060 BCCT transporter family PF550_17600 IPR018093 BCCT transporter, conserved site PF550_17610 IPR014083 Cation/acetate symporter ActP PF550_17610 IPR018212 Sodium/solute symporter, conserved site PF550_17610 IPR038377 Sodium/glucose symporter superfamily PF550_17610 IPR001734 Sodium/solute symporter PF550_17615 IPR007436 Protein of unknown function DUF485 PF550_17620 IPR011006 CheY-like superfamily PF550_17620 IPR003660 HAMP domain PF550_17620 IPR003594 Histidine kinase/HSP90-like ATPase PF550_17620 IPR005467 Histidine kinase domain PF550_17620 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain PF550_17620 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily PF550_17620 IPR036641 HPT domain superfamily PF550_17620 IPR037952 Sensor histidine kinase TorS, sensor domain PF550_17620 IPR004358 Signal transduction histidine kinase-related protein, C-terminal PF550_17620 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain PF550_17620 IPR001789 Signal transduction response regulator, receiver domain PF550_17620 IPR038188 TorS, sensor domain superfamily PF550_17620 IPR036890 Histidine kinase/HSP90-like ATPase superfamily PF550_17630 IPR011006 CheY-like superfamily PF550_17630 IPR016032 Signal transduction response regulator, C-terminal effector PF550_17630 IPR000792 Transcription regulator LuxR, C-terminal PF550_17630 IPR001789 Signal transduction response regulator, receiver domain PF550_17635 IPR029039 Flavoprotein-like superfamily PF550_17635 IPR005025 NADPH-dependent FMN reductase-like PF550_17635 IPR019912 FMN reductase, MsuE-like PF550_17640 IPR024014 FMNH(2)-dependent dimethylsulfone monooxygenase SfnG PF550_17640 IPR011251 Luciferase-like domain PF550_17640 IPR036661 Luciferase-like domain superfamily PF550_17645 IPR036390 Winged helix DNA-binding domain superfamily PF550_17645 IPR036388 Winged helix-like DNA-binding domain superfamily PF550_17645 IPR019887 Transcription regulator AsnC/Lrp, ligand binding domain PF550_17645 IPR011008 Dimeric alpha-beta barrel PF550_17645 IPR000485 AsnC-type HTH domain PF550_17645 IPR019888 Transcription regulator AsnC-type PF550_17650 IPR000868 Isochorismatase-like PF550_17650 IPR036380 Isochorismatase-like superfamily PF550_17655 IPR011904 Acetate-CoA ligase PF550_17655 IPR032387 Acetyl-coenzyme A synthetase, N-terminal domain PF550_17655 IPR025110 AMP-binding enzyme, C-terminal domain PF550_17655 IPR020845 AMP-binding, conserved site PF550_17655 IPR042099 AMP-dependent synthetase-like superfamily PF550_17655 IPR000873 AMP-dependent synthetase/ligase PF550_17665 IPR010920 LSM domain superfamily PF550_17665 IPR011066 Mechanosensitive ion channel MscS, C-terminal PF550_17665 IPR006686 Mechanosensitive ion channel MscS, conserved site PF550_17665 IPR011014 Mechanosensitive ion channel MscS, transmembrane-2 PF550_17665 IPR023408 Mechanosensitive ion channel MscS domain superfamily PF550_17665 IPR006685 Mechanosensitive ion channel MscS PF550_17670 IPR029028 Alpha/beta knot methyltransferases PF550_17670 IPR006700 Ribosomal RNA small subunit methyltransferase E PF550_17670 IPR029026 tRNA (guanine-N1-)-methyltransferase, N-terminal PF550_17675 IPR007507 3-deoxy-D-manno-octulosonic-acid transferase, N-terminal PF550_17675 IPR038107 3-deoxy-D-manno-octulosonic-acid transferase, N-terminal domain superfamily PF550_17675 IPR039901 3-deoxy-D-manno-octulosonic acid transferase PF550_17680 IPR013785 Aldolase-type TIM barrel PF550_17680 IPR001155 NADH:flavin oxidoreductase/NADH oxidase, N-terminal PF550_17705 IPR001667 DDH domain PF550_17705 IPR038763 DHH phosphoesterase superfamily PF550_17705 IPR003156 DHHA1 domain PF550_17705 IPR004610 Bacterial RecJ exonuclease PF550_17705 IPR041122 RecJ, OB domain PF550_17710 IPR012349 FMN-binding split barrel PF550_17710 IPR000659 Pyridoxamine 5'-phosphate oxidase PF550_17710 IPR019740 Pyridoxamine 5'-phosphate oxidase, conserved site PF550_17710 IPR011576 Pyridoxamine 5'-phosphate oxidase, putative PF550_17710 IPR019576 Pyridoxine 5'-phosphate oxidase, dimerisation, C-terminal PF550_17715 IPR005845 Alpha-D-phosphohexomutase, alpha/beta/alpha domain II PF550_17715 IPR005844 Alpha-D-phosphohexomutase, alpha/beta/alpha domain I PF550_17715 IPR005843 Alpha-D-phosphohexomutase, C-terminal PF550_17715 IPR036900 Alpha-D-phosphohexomutase, C-terminal domain superfamily PF550_17715 IPR016066 Alpha-D-phosphohexomutase, conserved site PF550_17715 IPR005841 Alpha-D-phosphohexomutase superfamily PF550_17715 IPR006352 Phosphoglucosamine mutase, bacterial type PF550_17715 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III PF550_17715 IPR005846 Alpha-D-phosphohexomutase, alpha/beta/alpha domain III PF550_17720 IPR000644 CBS domain PF550_17720 IPR005990 Inosine-5'-monophosphate dehydrogenase PF550_17720 IPR015875 IMP dehydrogenase / GMP reductase, conserved site PF550_17720 IPR001093 IMP dehydrogenase/GMP reductase PF550_17720 IPR013785 Aldolase-type TIM barrel PF550_17725 IPR005358 Putative zinc- or iron-chelating domain containing protein PF550_17730 IPR029039 Flavoprotein-like superfamily PF550_17730 IPR001226 Flavodoxin, conserved site PF550_17730 IPR008254 Flavodoxin/nitric oxide synthase PF550_17730 IPR001279 Metallo-beta-lactamase PF550_17730 IPR012349 FMN-binding split barrel PF550_17730 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like PF550_17730 IPR002563 Flavin reductase like domain PF550_17735 IPR012910 TonB-dependent receptor, plug domain PF550_17735 IPR037066 TonB-dependent receptor, plug domain superfamily PF550_17735 IPR000531 TonB-dependent receptor-like, beta-barrel PF550_17735 IPR010916 TonB box, conserved site PF550_17735 IPR036942 TonB-dependent receptor-like, beta-barrel domain superfamily PF550_17735 IPR010917 TonB-dependent receptor, conserved site PF550_17735 IPR010105 TonB-dependent siderophore receptor PF550_17735 IPR039423 TonB-dependent receptor-like PF550_17740 IPR001727 Gdt1 family PF550_17750 IPR003016 2-oxo acid dehydrogenase, lipoyl-binding site PF550_17750 IPR000089 Biotin/lipoyl attachment PF550_17750 IPR023213 Chloramphenicol acetyltransferase-like domain superfamily PF550_17750 IPR036625 E3-binding domain superfamily PF550_17750 IPR004167 Peripheral subunit-binding domain PF550_17750 IPR011053 Single hybrid motif PF550_17750 IPR001078 2-oxoacid dehydrogenase acyltransferase, catalytic domain PF550_17750 IPR006256 Dihydrolipoamide acetyltransferase pyruvate dehydrogenase complex PF550_17755 IPR035807 Pyruvate dehydrogenase E1 component, N-terminal PF550_17755 IPR004660 Pyruvate dehydrogenase E1 component PF550_17755 IPR041621 Pyruvate dehydrogenase E1 component, middle domain PF550_17755 IPR029061 Thiamin diphosphate-binding fold PF550_17755 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II PF550_17755 IPR005474 Transketolase, N-terminal PF550_17760 IPR016047 Peptidase M23 PF550_17760 IPR011055 Duplicated hybrid motif PF550_17770 IPR020568 Ribosomal protein S5 domain 2-type fold PF550_17770 IPR011334 UDP-3-O-acyl N-acetylglucosamine deacetylase, C-terminal PF550_17770 IPR015870 UDP-3-O-acyl N-acetylglucosamine deacetylase, N-terminal PF550_17770 IPR004463 UDP-3-O-acyl N-acetylglucosamine deacetylase PF550_17775 IPR008280 Tubulin/FtsZ, C-terminal PF550_17775 IPR024757 Cell division protein FtsZ, C-terminal PF550_17775 IPR020805 Cell division protein FtsZ, conserved site PF550_17775 IPR000158 Cell division protein FtsZ PF550_17775 IPR018316 Tubulin/FtsZ, 2-layer sandwich domain PF550_17775 IPR036525 Tubulin/FtsZ, GTPase domain superfamily PF550_17775 IPR003008 Tubulin/FtsZ, GTPase domain PF550_17780 IPR003494 SHS2 domain inserted in FtsA PF550_17780 IPR020823 Cell division protein FtsA PF550_17785 IPR034746 POTRA domain PF550_17785 IPR026579 Cell division protein FtsQ PF550_17785 IPR005548 Cell division protein FtsQ/DivIB PF550_17785 IPR013685 POTRA domain, FtsQ-type PF550_17790 IPR011761 ATP-grasp fold PF550_17790 IPR013815 ATP-grasp fold, subdomain 1 PF550_17790 IPR000291 D-alanine--D-alanine ligase/VANA/B/C, conserved site PF550_17790 IPR005905 D-alanine--D-alanine ligase PF550_17790 IPR016185 Pre-ATP-grasp domain superfamily PF550_17790 IPR011127 D-alanine--D-alanine ligase, N-terminal domain PF550_17790 IPR011095 D-alanine--D-alanine ligase, C-terminal PF550_17795 IPR036565 Mur-like, catalytic domain superfamily PF550_17795 IPR004101 Mur ligase, C-terminal PF550_17795 IPR036615 Mur ligase, C-terminal domain superfamily PF550_17795 IPR013221 Mur ligase, central PF550_17795 IPR000713 Mur ligase, N-terminal catalytic domain PF550_17795 IPR005758 UDP-N-acetylmuramate--L-alanine ligase PF550_17800 IPR004276 Glycosyltransferase family 28, N-terminal domain PF550_17800 IPR006009 N-acetylglucosaminyltransferase, MurG PF550_17800 IPR007235 Glycosyl transferase, family 28, C-terminal PF550_17805 IPR016185 Pre-ATP-grasp domain superfamily PF550_17805 IPR011761 ATP-grasp fold PF550_17805 IPR004215 Prokaryotic glutathione synthetase, N-terminal PF550_17805 IPR004218 Prokaryotic glutathione synthetase, ATP-binding PF550_17805 IPR006284 Glutathione synthetase, prokaryotic PF550_17805 IPR013815 ATP-grasp fold, subdomain 1 PF550_17815 IPR037066 TonB-dependent receptor, plug domain superfamily PF550_17815 IPR000531 TonB-dependent receptor-like, beta-barrel PF550_17815 IPR036942 TonB-dependent receptor-like, beta-barrel domain superfamily PF550_17815 IPR010105 TonB-dependent siderophore receptor PF550_17815 IPR012910 TonB-dependent receptor, plug domain PF550_17815 IPR039423 TonB-dependent receptor-like PF550_17825 IPR023031 Orotate phosphoribosyltransferase PF550_17825 IPR000836 Phosphoribosyltransferase domain PF550_17825 IPR029057 Phosphoribosyltransferase-like PF550_17825 IPR004467 Orotate phosphoribosyl transferase domain PF550_17830 IPR004808 AP endonuclease 1 PF550_17830 IPR020847 AP endonuclease 1, binding site PF550_17830 IPR020848 AP endonuclease 1, conserved site PF550_17830 IPR036691 Endonuclease/exonuclease/phosphatase superfamily PF550_17830 IPR005135 Endonuclease/exonuclease/phosphatase PF550_17835 IPR006660 Arsenate reductase-like PF550_17835 IPR036249 Thioredoxin-like superfamily PF550_17835 IPR006504 Transcriptional regulator Spx/MgsR PF550_17845 IPR029058 Alpha/Beta hydrolase fold PF550_17845 IPR013094 Alpha/beta hydrolase fold-3 PF550_17845 IPR002168 Lipase, GDXG, putative histidine active site PF550_17845 IPR033140 Lipase, GDXG, putative serine active site PF550_17850 IPR029787 Nucleotide cyclase PF550_17850 IPR011620 Signal transduction histidine kinase, 5TM receptor LytS, transmembrane region PF550_17850 IPR000160 GGDEF domain PF550_17855 IPR017937 Thioredoxin, conserved site PF550_17855 IPR003834 Cytochrome C biogenesis protein, transmembrane domain PF550_17855 IPR035671 DsbD gamma PF550_17855 IPR028250 Thiol:disulfide interchange protein DsbD, N-terminal domain PF550_17855 IPR036929 Thiol:disulfide interchange protein DsbD, N-terminal domain superfamily PF550_17855 IPR022910 Thiol:disulphide interchange protein DsbD PF550_17855 IPR036249 Thioredoxin-like superfamily PF550_17855 IPR013766 Thioredoxin domain PF550_17885 IPR023419 Transthyretin, conserved site PF550_17885 IPR036817 Transthyretin/hydroxyisourate hydrolase domain superfamily PF550_17885 IPR023418 Transthyretin, thyroxine binding site PF550_17885 IPR014306 Hydroxyisourate hydrolase PF550_17885 IPR023416 Transthyretin/hydroxyisourate hydrolase domain PF550_17890 IPR017588 Uric acid permease UacT-like PF550_17890 IPR006042 Xanthine/uracil permease PF550_17890 IPR006043 Xanthine/uracil/vitamin C permease PF550_17900 IPR002938 FAD-binding domain PF550_17900 IPR036188 FAD/NAD(P)-binding domain superfamily PF550_17905 IPR015908 Allantoicase domain PF550_17905 IPR008979 Galactose-binding-like domain superfamily PF550_17905 IPR005164 Allantoicase PF550_17910 IPR011051 RmlC-like cupin domain superfamily PF550_17910 IPR023525 Ureidoglycolate lyase, bacterial PF550_17910 IPR024060 Ureidoglycolate lyase domain superfamily PF550_17910 IPR007247 Ureidoglycolate lyase PF550_17915 IPR002288 DNA gyrase B subunit, C-terminal PF550_17915 IPR003594 Histidine kinase/HSP90-like ATPase PF550_17915 IPR036890 Histidine kinase/HSP90-like ATPase superfamily PF550_17915 IPR020568 Ribosomal protein S5 domain 2-type fold PF550_17915 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup PF550_17915 IPR001241 DNA topoisomerase, type IIA PF550_17915 IPR013760 DNA topoisomerase, type IIA-like domain superfamily PF550_17915 IPR013506 DNA topoisomerase, type IIA, subunit B, domain 2 PF550_17915 IPR013759 DNA topoisomerase, type IIA, subunit B, C-terminal PF550_17915 IPR006171 TOPRIM domain PF550_17915 IPR005737 DNA topoisomerase IV, subunit B, Gram-negative PF550_17915 IPR018522 DNA topoisomerase, type IIA, conserved site PF550_17920 IPR029058 Alpha/Beta hydrolase fold PF550_17920 IPR008886 Uncharacterised protein family UPF0227/Esterase YqiA PF550_17935 IPR000726 Glycoside hydrolase, family 19, catalytic PF550_17935 IPR023346 Lysozyme-like domain superfamily PF550_17940 IPR018769 Domain of unknown function DUF2345, Vgr C-terminal PF550_17940 IPR006531 Gp5 N-terminal PF550_17940 IPR028244 Putative type VI secretion system, Rhs element associated Vgr domain PF550_17940 IPR017847 Type VI secretion system, RhsGE-associated Vgr family subset PF550_17940 IPR006533 Type VI secretion system, RhsGE-associated Vgr protein PF550_17940 IPR037026 Vgr protein, OB-fold domain superfamily PF550_17945 IPR023380 DsbB-like superfamily PF550_17945 IPR003752 Disulphide bond formation protein DsbB/BdbC PF550_17945 IPR022920 Disulphide bond formation protein DsbB PF550_17950 IPR014746 Glutamine synthetase/guanido kinase, catalytic domain PF550_17950 IPR007370 Glutamate--cysteine ligase PF550_17950 IPR006334 Glutamate--cysteine ligase, monofunctional PF550_17965 IPR007383 Protein of unknown function DUF445 PF550_17970 IPR015424 Pyridoxal phosphate-dependent transferase PF550_17970 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 PF550_17970 IPR015421 Pyridoxal phosphate-dependent transferase, major domain PF550_17970 IPR004839 Aminotransferase, class I/classII PF550_17975 IPR002528 Multi antimicrobial extrusion protein PF550_17980 IPR002347 Short-chain dehydrogenase/reductase SDR PF550_17980 IPR020904 Short-chain dehydrogenase/reductase, conserved site PF550_17980 IPR036291 NAD(P)-binding domain superfamily PF550_17990 IPR036388 Winged helix-like DNA-binding domain superfamily PF550_17990 IPR039420 Transcriptional regulatory protein WalR-like PF550_17990 IPR001789 Signal transduction response regulator, receiver domain PF550_17990 IPR016032 Signal transduction response regulator, C-terminal effector PF550_17990 IPR001867 OmpR/PhoB-type DNA-binding domain PF550_17990 IPR011006 CheY-like superfamily PF550_17990 IPR011879 Signal transduction response regulator, phosphate regulon transcriptional regulatory protein PhoB PF550_17995 IPR021766 Phosphate regulon sensor protein PhoR PF550_17995 IPR014310 Signal transduction histidine kinase, phosphate regulon sensor PhoR PF550_17995 IPR004358 Signal transduction histidine kinase-related protein, C-terminal PF550_17995 IPR013767 PAS fold PF550_17995 IPR036890 Histidine kinase/HSP90-like ATPase superfamily PF550_17995 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily PF550_17995 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain PF550_17995 IPR005467 Histidine kinase domain PF550_17995 IPR003594 Histidine kinase/HSP90-like ATPase PF550_17995 IPR035965 PAS domain superfamily PF550_17995 IPR000014 PAS domain PF550_18005 IPR003817 Phosphatidylserine decarboxylase-related PF550_18005 IPR033177 Phosphatidylserine decarboxylase PF550_18005 IPR033178 Phosphatidylserine decarboxylase, prokaryotic type 1 PF550_18010 IPR036873 Rhodanese-like domain superfamily PF550_18010 IPR001307 Thiosulphate sulfurtransferase, conserved site PF550_18010 IPR001763 Rhodanese-like domain PF550_18015 IPR006406 Nicotinate phosphoribosyltransferase PF550_18015 IPR007229 Nicotinate phosphoribosyltransferase family PF550_18015 IPR036068 Nicotinate phosphoribosyltransferase-like, C-terminal PF550_18015 IPR040727 Nicotinate phosphoribosyltransferase, N-terminal domain PF550_18015 IPR041525 Nicotinate/nicotinamide phosphoribosyltransferase PF550_18020 IPR023509 D-aminoacyl-tRNA deacylase-like superfamily PF550_18020 IPR003732 D-aminoacyl-tRNA deacylase DTD PF550_18035 IPR023190 Phosphoserine phosphatase, domain 2 PF550_18035 IPR023214 HAD superfamily PF550_18035 IPR036412 HAD-like superfamily PF550_18035 IPR002912 ACT domain PF550_18045 IPR036144 RibA-like superfamily PF550_18045 IPR032677 GTP cyclohydrolase II PF550_18045 IPR000422 3,4-dihydroxy-2-butanone 4-phosphate synthase, RibB PF550_18045 IPR017945 DHBP synthase RibB-like alpha/beta domain superfamily PF550_18050 IPR034964 Lumazine synthase PF550_18050 IPR036467 Lumazine/riboflavin synthase superfamily PF550_18050 IPR002180 Lumazine/riboflavin synthase PF550_18055 IPR035926 NusB-like superfamily PF550_18055 IPR011605 NusB antitermination factor PF550_18055 IPR006027 NusB/RsmB/TIM44 PF550_18060 IPR036676 PurM-like, C-terminal domain superfamily PF550_18060 IPR016188 PurM-like, N-terminal domain PF550_18060 IPR036921 PurM-like, N-terminal domain superfamily PF550_18060 IPR006283 Thiamine-monophosphate kinase PF550_18060 IPR010918 PurM-like, C-terminal domain PF550_18065 IPR026037 Phosphatidylglycerophosphatase A PF550_18065 IPR036681 PgpA-like superfamily PF550_18065 IPR007686 YutG/PgpA domain PF550_18070 IPR029044 Nucleotide-diphospho-sugar transferases PF550_18070 IPR011004 Trimeric LpxA-like superfamily PF550_18070 IPR025877 MobA-like NTP transferase PF550_18070 IPR018357 Hexapeptide transferase, conserved site PF550_18070 IPR005882 Bifunctional UDP-N-acetylglucosamine pyrophosphorylase/glucosamine-1-phosphate N-acetyltransferase PF550_18070 IPR038009 GlmU, C-terminal LbH domain PF550_18070 IPR001451 Hexapeptide repeat PF550_18075 IPR017932 Glutamine amidotransferase type 2 domain PF550_18075 IPR005855 Glucosamine-fructose-6-phosphate aminotransferase, isomerising PF550_18075 IPR035490 GlmS/FrlB, SIS domain 2 PF550_18075 IPR029055 Nucleophile aminohydrolases, N-terminal PF550_18075 IPR001347 Sugar isomerase (SIS) PF550_18075 IPR035466 GlmS/AgaS, SIS domain 1 PF550_18080 IPR001920 Asp/Glu racemase PF550_18080 IPR033134 Asp/Glu racemase, active site 2 PF550_18080 IPR004391 Glutamate racemase PF550_18080 IPR015942 Asp/Glu/hydantoin racemase PF550_18080 IPR018187 Asp/Glu racemase, active site 1 PF550_18095 IPR005923 Formiminoglutamase PF550_18095 IPR006035 Ureohydrolase PF550_18095 IPR023696 Ureohydrolase domain superfamily PF550_18095 IPR020855 Ureohydrolase, manganese-binding site PF550_18100 IPR006680 Amidohydrolase-related PF550_18100 IPR005920 Imidazolonepropionase PF550_18100 IPR011059 Metal-dependent hydrolase, composite domain superfamily PF550_18100 IPR032466 Metal-dependent hydrolase PF550_18105 IPR004841 Amino acid permease/ SLC12A domain PF550_18105 IPR004840 Amino acid permease, conserved site PF550_18110 IPR024083 Fumarase/histidase, N-terminal PF550_18110 IPR001106 Aromatic amino acid lyase PF550_18110 IPR005921 Histidine ammonia-lyase PF550_18110 IPR008948 L-Aspartase-like PF550_18110 IPR022313 Phenylalanine/histidine ammonia-lyases, active site PF550_18115 IPR023636 Urocanase conserved site PF550_18115 IPR036190 Urocanase superfamily PF550_18115 IPR035085 Urocanase, Rossmann-like domain PF550_18115 IPR035400 Urocanase, N-terminal domain PF550_18115 IPR023637 Urocanase PF550_18115 IPR038364 Urocanase, central domain superfamily PF550_18115 IPR035401 Urocanase, C-terminal domain PF550_18120 IPR036397 Ribonuclease H superfamily PF550_18120 IPR012337 Ribonuclease H-like superfamily PF550_18120 IPR001584 Integrase, catalytic core PF550_18120 IPR032874 DDE domain PF550_18130 IPR006175 YjgF/YER057c/UK114 family PF550_18130 IPR019897 RidA, conserved site PF550_18130 IPR035959 RutC-like superfamily PF550_18130 IPR035709 RutC family, YoaB-like PF550_18135 IPR000821 Alanine racemase PF550_18135 IPR009006 Alanine racemase/group IV decarboxylase, C-terminal PF550_18135 IPR011079 Alanine racemase, C-terminal PF550_18135 IPR001608 Alanine racemase, N-terminal PF550_18135 IPR020622 Alanine racemase, pyridoxal-phosphate attachment site PF550_18135 IPR029066 PLP-binding barrel PF550_18140 IPR006076 FAD dependent oxidoreductase PF550_18140 IPR036188 FAD/NAD(P)-binding domain superfamily PF550_18140 IPR023080 D-amino acid dehydrogenase DadA PF550_18145 IPR019888 Transcription regulator AsnC-type PF550_18145 IPR019885 Transcription regulator HTH, AsnC-type, conserved site PF550_18145 IPR019887 Transcription regulator AsnC/Lrp, ligand binding domain PF550_18145 IPR036390 Winged helix DNA-binding domain superfamily PF550_18145 IPR011008 Dimeric alpha-beta barrel PF550_18145 IPR000485 AsnC-type HTH domain PF550_18145 IPR036388 Winged helix-like DNA-binding domain superfamily PF550_18145 IPR011991 ArsR-like helix-turn-helix domain PF550_18155 IPR012910 TonB-dependent receptor, plug domain PF550_18155 IPR037066 TonB-dependent receptor, plug domain superfamily PF550_18155 IPR039423 TonB-dependent receptor-like PF550_18155 IPR000531 TonB-dependent receptor-like, beta-barrel PF550_18155 IPR036942 TonB-dependent receptor-like, beta-barrel domain superfamily PF550_18155 IPR010105 TonB-dependent siderophore receptor PF550_18170 IPR006145 Pseudouridine synthase, RsuA/RluA PF550_18170 IPR006224 Pseudouridine synthase, RluC/RluD, conserved site PF550_18170 IPR020103 Pseudouridine synthase, catalytic domain superfamily PF550_18170 IPR006225 Pseudouridine synthase, RluC/RluD PF550_18200 IPR018769 Domain of unknown function DUF2345, Vgr C-terminal PF550_18200 IPR006531 Gp5 N-terminal PF550_18200 IPR037026 Vgr protein, OB-fold domain superfamily PF550_18200 IPR006533 Type VI secretion system, RhsGE-associated Vgr protein PF550_18200 IPR017847 Type VI secretion system, RhsGE-associated Vgr family subset PF550_18200 IPR028244 Putative type VI secretion system, Rhs element associated Vgr domain PF550_18210 IPR016039 Thiolase-like PF550_18210 IPR020841 Polyketide synthase, beta-ketoacyl synthase domain PF550_18210 IPR014030 Beta-ketoacyl synthase, N-terminal PF550_18210 IPR014031 Beta-ketoacyl synthase, C-terminal PF550_18210 IPR018201 Beta-ketoacyl synthase, active site PF550_18210 IPR000794 Beta-ketoacyl synthase PF550_18240 IPR012708 2-methylisocitrate dehydratase AcnD, Fe/S-dependent PF550_18240 IPR015931 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha, subdomain 1/3 PF550_18240 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain PF550_18240 IPR015928 Aconitase/3-isopropylmalate dehydratase, swivel PF550_18240 IPR036008 Aconitase, iron-sulfur domain PF550_18240 IPR006249 Aconitase/Iron-responsive element-binding protein 2 PF550_18240 IPR000573 Aconitase A/isopropylmalate dehydratase small subunit, swivel domain PF550_18245 IPR016143 Citrate synthase-like, small alpha subdomain PF550_18245 IPR002020 Citrate synthase PF550_18245 IPR019810 Citrate synthase active site PF550_18245 IPR024176 Citrate synthase, bacterial-type PF550_18245 IPR036969 Citrate synthase superfamily PF550_18245 IPR011278 2-methylcitrate synthase/citrate synthase type I PF550_18245 IPR016142 Citrate synthase-like, large alpha subdomain PF550_18250 IPR018523 Isocitrate lyase/phosphorylmutase, conserved site PF550_18250 IPR039556 ICL/PEPM domain PF550_18250 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain superfamily PF550_18250 IPR040442 Pyruvate kinase-like domain superfamily PF550_18250 IPR012695 2-methylisocitrate lyase PF550_18255 IPR000485 AsnC-type HTH domain PF550_18255 IPR011711 GntR, C-terminal PF550_18255 IPR008920 Transcription regulator FadR/GntR, C-terminal PF550_18255 IPR000524 Transcription regulator HTH, GntR PF550_18255 IPR036390 Winged helix DNA-binding domain superfamily PF550_18255 IPR036388 Winged helix-like DNA-binding domain superfamily PF550_18265 IPR004839 Aminotransferase, class I/classII PF550_18265 IPR015421 Pyridoxal phosphate-dependent transferase, major domain PF550_18265 IPR000796 Aspartate/other aminotransferase PF550_18265 IPR015424 Pyridoxal phosphate-dependent transferase PF550_18265 IPR004838 Aminotransferases, class-I, pyridoxal-phosphate-binding site PF550_18265 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 PF550_18270 IPR016172 D-lactate dehydrogenase, C-terminal subdomain 1 PF550_18270 IPR016173 D-lactate dehydrogenase, C-terminal subdomain 2 PF550_18270 IPR012256 D-lactate dehydrogenase PF550_18270 IPR016166 FAD-binding domain, PCMH-type PF550_18270 IPR036318 FAD-binding, type PCMH-like superfamily PF550_18270 IPR016167 FAD-binding, type PCMH, subdomain 1 PF550_18270 IPR016169 FAD-binding, type PCMH, subdomain 2 PF550_18270 IPR016164 FAD-linked oxidase-like, C-terminal PF550_18270 IPR015409 D-lactate dehydrogenase, membrane binding, C-terminal PF550_18270 IPR006094 FAD linked oxidase, N-terminal PF550_18275 IPR013785 Aldolase-type TIM barrel PF550_18275 IPR000262 FMN-dependent dehydrogenase PF550_18275 IPR037396 FMN hydroxy acid dehydrogenase domain PF550_18275 IPR008259 FMN-dependent alpha-hydroxy acid dehydrogenase, active site PF550_18275 IPR020920 L-lactate dehydrogenase, bacterial PF550_18275 IPR012133 Alpha-hydroxy acid dehydrogenase, FMN-dependent PF550_18280 IPR036388 Winged helix-like DNA-binding domain superfamily PF550_18280 IPR036390 Winged helix DNA-binding domain superfamily PF550_18280 IPR000524 Transcription regulator HTH, GntR PF550_18280 IPR008920 Transcription regulator FadR/GntR, C-terminal PF550_18280 IPR011711 GntR, C-terminal PF550_18285 IPR003804 L-lactate permease PF550_18290 IPR036900 Alpha-D-phosphohexomutase, C-terminal domain superfamily PF550_18290 IPR005841 Alpha-D-phosphohexomutase superfamily PF550_18290 IPR005846 Alpha-D-phosphohexomutase, alpha/beta/alpha domain III PF550_18290 IPR005845 Alpha-D-phosphohexomutase, alpha/beta/alpha domain II PF550_18290 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III PF550_18290 IPR005844 Alpha-D-phosphohexomutase, alpha/beta/alpha domain I PF550_18290 IPR016066 Alpha-D-phosphohexomutase, conserved site PF550_18290 IPR005843 Alpha-D-phosphohexomutase, C-terminal PF550_18295 IPR036291 NAD(P)-binding domain superfamily PF550_18295 IPR005886 UDP-glucose 4-epimerase PF550_18295 IPR016040 NAD(P)-binding domain PF550_18300 IPR035476 Phosphoglucose isomerase, SIS domain 1 PF550_18300 IPR023096 Phosphoglucose isomerase, C-terminal PF550_18300 IPR001672 Phosphoglucose isomerase (PGI) PF550_18300 IPR035482 Phosphoglucose isomerase, SIS domain 2 PF550_18300 IPR018189 Phosphoglucose isomerase, conserved site PF550_18305 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily PF550_18305 IPR036291 NAD(P)-binding domain superfamily PF550_18305 IPR017476 UDP-glucose/GDP-mannose dehydrogenase PF550_18305 IPR036220 UDP-glucose/GDP-mannose dehydrogenase, C-terminal domain superfamily PF550_18305 IPR001732 UDP-glucose/GDP-mannose dehydrogenase, N-terminal PF550_18305 IPR028357 UDP-glucose 6-dehydrogenase, bacterial type PF550_18305 IPR014027 UDP-glucose/GDP-mannose dehydrogenase, C-terminal PF550_18305 IPR014026 UDP-glucose/GDP-mannose dehydrogenase, dimerisation PF550_18310 IPR005771 UTP--glucose-1-phosphate uridylyltransferase, bacterial/archaeal-type PF550_18310 IPR005835 Nucleotidyl transferase domain PF550_18310 IPR029044 Nucleotide-diphospho-sugar transferases PF550_18315 IPR003362 Bacterial sugar transferase PF550_18320 IPR029044 Nucleotide-diphospho-sugar transferases PF550_18320 IPR001173 Glycosyltransferase 2-like PF550_18325 IPR001296 Glycosyl transferase, family 1 PF550_18340 IPR001296 Glycosyl transferase, family 1 PF550_18340 IPR017814 Mycothiol biosynthesis protein, MshA PF550_18340 IPR028098 Glycosyltransferase subfamily 4-like, N-terminal domain PF550_18345 IPR011004 Trimeric LpxA-like superfamily PF550_18345 IPR024688 Maltose/galactoside acetyltransferase PF550_18345 IPR039369 Galactoside O-acetyltransferase LacA-like PF550_18345 IPR001451 Hexapeptide repeat PF550_18355 IPR015421 Pyridoxal phosphate-dependent transferase, major domain PF550_18355 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 PF550_18355 IPR015424 Pyridoxal phosphate-dependent transferase PF550_18355 IPR000653 DegT/DnrJ/EryC1/StrS aminotransferase PF550_18360 IPR011004 Trimeric LpxA-like superfamily PF550_18360 IPR001451 Hexapeptide repeat PF550_18365 IPR004104 Oxidoreductase, C-terminal PF550_18365 IPR000683 Oxidoreductase, N-terminal PF550_18365 IPR036291 NAD(P)-binding domain superfamily PF550_18370 IPR028359 UDP-N-acetyl-D-mannosamine/glucosamine dehydrogenase PF550_18370 IPR001732 UDP-glucose/GDP-mannose dehydrogenase, N-terminal PF550_18370 IPR014026 UDP-glucose/GDP-mannose dehydrogenase, dimerisation PF550_18370 IPR036220 UDP-glucose/GDP-mannose dehydrogenase, C-terminal domain superfamily PF550_18370 IPR014027 UDP-glucose/GDP-mannose dehydrogenase, C-terminal PF550_18370 IPR017476 UDP-glucose/GDP-mannose dehydrogenase PF550_18370 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily PF550_18370 IPR036291 NAD(P)-binding domain superfamily PF550_18375 IPR040716 Outer-membrane lipoprotein Wza, C-terminal domain PF550_18375 IPR019554 Soluble ligand binding domain PF550_18375 IPR003715 Polysaccharide export protein PF550_18380 IPR036196 Phosphotyrosine protein phosphatase I superfamily PF550_18380 IPR017867 Protein-tyrosine phosphatase, low molecular weight PF550_18380 IPR023485 Phosphotyrosine protein phosphatase I PF550_18385 IPR025669 AAA domain PF550_18385 IPR032807 Tyrosine kinase, G-rich domain PF550_18385 IPR003856 Polysaccharide chain length determinant N-terminal domain PF550_18385 IPR027417 P-loop containing nucleoside triphosphate hydrolase PF550_18385 IPR005702 Exopolysaccharide synthesis protein PF550_18390 IPR008104 Macrophage infectivity potentiator PF550_18390 IPR000774 Peptidyl-prolyl cis-trans isomerase, FKBP-type, N-terminal PF550_18390 IPR036944 Peptidyl-prolyl cis-trans isomerase, FKBP-type, N-terminal domain superfamily PF550_18390 IPR001179 FKBP-type peptidyl-prolyl cis-trans isomerase domain PF550_18395 IPR008104 Macrophage infectivity potentiator PF550_18395 IPR001179 FKBP-type peptidyl-prolyl cis-trans isomerase domain PF550_18395 IPR000774 Peptidyl-prolyl cis-trans isomerase, FKBP-type, N-terminal PF550_18395 IPR036944 Peptidyl-prolyl cis-trans isomerase, FKBP-type, N-terminal domain superfamily PF550_18400 IPR004268 Peptidoglycan biosynthesis protein MurJ PF550_18405 IPR036505 N-acetylmuramoyl-L-alanine amidase/PGRP domain superfamily PF550_18405 IPR002502 N-acetylmuramoyl-L-alanine amidase domain PF550_18410 IPR022412 Quinolinate phosphoribosyl transferase, N-terminal PF550_18410 IPR002638 Quinolinate phosphoribosyl transferase, C-terminal PF550_18410 IPR037128 Quinolinate phosphoribosyl transferase, N-terminal domain superfamily PF550_18410 IPR036068 Nicotinate phosphoribosyltransferase-like, C-terminal PF550_18410 IPR027277 Nicotinate-nucleotide pyrophosphorylase/Putative pyrophosphorylase ModD PF550_18410 IPR004393 Nicotinate-nucleotide pyrophosphorylase PF550_18410 IPR013785 Aldolase-type TIM barrel PF550_18430 IPR018336 Ribonuclease PH, conserved site PF550_18430 IPR036345 Exoribonuclease, PH domain 2 superfamily PF550_18430 IPR015847 Exoribonuclease, phosphorolytic domain 2 PF550_18430 IPR001247 Exoribonuclease, phosphorolytic domain 1 PF550_18430 IPR002381 Ribonuclease PH, bacterial-type PF550_18430 IPR020568 Ribosomal protein S5 domain 2-type fold PF550_18430 IPR027408 PNPase/RNase PH domain superfamily PF550_18435 IPR005804 Fatty acid desaturase domain PF550_18440 IPR017927 FAD-binding domain, ferredoxin reductase-type PF550_18440 IPR039261 Ferredoxin-NADP reductase (FNR), nucleotide-binding domain PF550_18440 IPR001433 Oxidoreductase FAD/NAD(P)-binding PF550_18440 IPR017938 Riboflavin synthase-like beta-barrel PF550_18445 IPR009057 Homeobox-like domain superfamily PF550_18445 IPR001647 DNA-binding HTH domain, TetR-type PF550_18445 IPR023764 Transcriptional repressor HTH, FabR PF550_18450 IPR023772 DNA-binding HTH domain, TetR-type, conserved site PF550_18450 IPR009057 Homeobox-like domain superfamily PF550_18450 IPR001647 DNA-binding HTH domain, TetR-type PF550_18450 IPR013571 Transcription regulator QacR, C-terminal PF550_18450 IPR036271 Tetracyclin repressor-like, C-terminal domain superfamily PF550_18455 IPR013766 Thioredoxin domain PF550_18455 IPR017937 Thioredoxin, conserved site PF550_18455 IPR036249 Thioredoxin-like superfamily PF550_18455 IPR023205 Thiol:disulphide interchange protein DsbA/DsbL PF550_18455 IPR001853 DSBA-like thioredoxin domain PF550_18460 IPR010233 Ubiquinone biosynthesis O-methyltransferase PF550_18460 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase PF550_18465 IPR006346 2-phosphoglycolate phosphatase-like, prokaryotic PF550_18465 IPR023214 HAD superfamily PF550_18465 IPR041492 Haloacid dehalogenase-like hydrolase PF550_18465 IPR006439 HAD hydrolase, subfamily IA PF550_18465 IPR036412 HAD-like superfamily PF550_18465 IPR023198 Phosphoglycolate phosphatase-like, domain 2 PF550_18470 IPR002347 Short-chain dehydrogenase/reductase SDR PF550_18470 IPR020904 Short-chain dehydrogenase/reductase, conserved site PF550_18470 IPR036291 NAD(P)-binding domain superfamily PF550_18485 IPR010167 Amino-acid N-acetyltransferase PF550_18485 IPR000182 GNAT domain PF550_18485 IPR001048 Aspartate/glutamate/uridylate kinase PF550_18485 IPR016181 Acyl-CoA N-acyltransferase PF550_18485 IPR033719 N-acetylglutamate synthase, kinase-like domain PF550_18485 IPR036393 Acetylglutamate kinase-like superfamily PF550_18490 IPR010067 Aliphatic sulfonates-binding protein PF550_18490 IPR015168 SsuA/THI5-like PF550_18490 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF PF550_18495 IPR015168 SsuA/THI5-like PF550_18495 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF PF550_18495 IPR010067 Aliphatic sulfonates-binding protein PF550_18500 IPR036661 Luciferase-like domain superfamily PF550_18500 IPR011251 Luciferase-like domain PF550_18500 IPR019911 Alkanesulphonate monooxygenase, FMN-dependent PF550_18505 IPR035906 MetI-like superfamily PF550_18505 IPR000515 ABC transporter type 1, transmembrane domain MetI-like PF550_18510 IPR003439 ABC transporter-like PF550_18510 IPR003593 AAA+ ATPase domain PF550_18510 IPR017875 Aliphatic sulfonates import ATP-binding protein SsuB PF550_18510 IPR027417 P-loop containing nucleoside triphosphate hydrolase PF550_18515 IPR036271 Tetracyclin repressor-like, C-terminal domain superfamily PF550_18515 IPR001647 DNA-binding HTH domain, TetR-type PF550_18515 IPR019915 Transcription regulator, pyrimidine utilisation, RutR PF550_18515 IPR013573 Transcription regulator YcdC, C-terminal PF550_18515 IPR009057 Homeobox-like domain superfamily PF550_18520 IPR010049 MTA/SAH nucleosidase PF550_18520 IPR000845 Nucleoside phosphorylase domain PF550_18520 IPR035994 Nucleoside phosphorylase superfamily PF550_18530 IPR015864 FAD synthetase PF550_18530 IPR023468 Riboflavin kinase PF550_18530 IPR015865 Riboflavin kinase domain, bacterial/eukaryotic PF550_18530 IPR023465 Riboflavin kinase domain superfamily PF550_18530 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold PF550_18530 IPR002606 Riboflavin kinase, bacterial PF550_18535 IPR013155 Methionyl/Valyl/Leucyl/Isoleucyl-tRNA synthetase, anticodon-binding PF550_18535 IPR002300 Aminoacyl-tRNA synthetase, class Ia PF550_18535 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site PF550_18535 IPR023585 Isoleucine-tRNA ligase, type 1 PF550_18535 IPR033708 Isoleucyl tRNA synthetase type 1, anticodon-binding domain PF550_18535 IPR002301 Isoleucine-tRNA ligase PF550_18535 IPR010663 Zinc finger, FPG/IleRS-type PF550_18535 IPR009008 Valyl/Leucyl/Isoleucyl-tRNA synthetase, editing domain PF550_18535 IPR009080 Aminoacyl-tRNA synthetase, class Ia, anticodon-binding PF550_18535 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold PF550_18540 IPR001872 Peptidase A8, signal peptidase II PF550_18545 IPR001179 FKBP-type peptidyl-prolyl cis-trans isomerase domain PF550_18585 IPR029000 Cyclophilin-like domain superfamily PF550_18585 IPR002130 Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain PF550_18585 IPR020892 Cyclophilin-type peptidyl-prolyl cis-trans isomerase, conserved site PF550_18590 IPR029058 Alpha/Beta hydrolase fold PF550_18590 IPR013094 Alpha/beta hydrolase fold-3 PF550_18610 IPR036388 Winged helix-like DNA-binding domain superfamily PF550_18610 IPR036390 Winged helix DNA-binding domain superfamily PF550_18610 IPR000847 Transcription regulator HTH, LysR PF550_18610 IPR005119 LysR, substrate-binding PF550_18615 IPR000740 GrpE nucleotide exchange factor PF550_18615 IPR009012 GrpE nucleotide exchange factor, head PF550_18615 IPR013805 GrpE nucleotide exchange factor, coiled-coil PF550_18620 IPR013126 Heat shock protein 70 family PF550_18620 IPR029047 Heat shock protein 70kD, peptide-binding domain superfamily PF550_18620 IPR029048 Heat shock protein 70kD, C-terminal domain superfamily PF550_18620 IPR012725 Chaperone DnaK PF550_18620 IPR018181 Heat shock protein 70, conserved site PF550_18640 IPR031304 Transglycosylase SLT domain 2 PF550_18640 IPR011757 Lytic transglycosylase MltB PF550_18640 IPR023346 Lysozyme-like domain superfamily PF550_18645 IPR016185 Pre-ATP-grasp domain superfamily PF550_18645 IPR040686 Phosphoribosylaminoimidazole carboxylase, C-terminal domain PF550_18645 IPR011761 ATP-grasp fold PF550_18645 IPR003135 ATP-grasp fold, ATP-dependent carboxylate-amine ligase-type PF550_18645 IPR013815 ATP-grasp fold, subdomain 1 PF550_18645 IPR011054 Rudiment single hybrid motif PF550_18645 IPR005875 Phosphoribosylaminoimidazole carboxylase, ATPase subunit PF550_18650 IPR033747 Class I PurE PF550_18650 IPR000031 PurE domain PF550_18650 IPR024694 PurE, prokaryotic type PF550_18650 IPR035893 PurE domain superfamily PF550_18660 IPR004101 Mur ligase, C-terminal PF550_18660 IPR036615 Mur ligase, C-terminal domain superfamily PF550_18660 IPR013221 Mur ligase, central PF550_18660 IPR000713 Mur ligase, N-terminal catalytic domain PF550_18660 IPR005757 Murein peptide ligase PF550_18660 IPR036565 Mur-like, catalytic domain superfamily PF550_18670 IPR000326 Phosphatidic acid phosphatase type 2/haloperoxidase PF550_18670 IPR033879 Undecaprenyl-diphosphatase PF550_18670 IPR036938 Phosphatidic acid phosphatase type 2/haloperoxidase superfamily PF550_18675 IPR005496 Integral membrane protein TerC PF550_18675 IPR022369 Integral membrane protein TerC, riboswitch-linked PF550_18685 IPR005494 Glutathionylspermidine synthase, pre-ATP-grasp-like domain PF550_18685 IPR016185 Pre-ATP-grasp domain superfamily PF550_18695 IPR032466 Metal-dependent hydrolase PF550_18695 IPR011059 Metal-dependent hydrolase, composite domain superfamily PF550_18695 IPR014311 Guanine deaminase PF550_18695 IPR006680 Amidohydrolase-related PF550_18700 IPR029057 Phosphoribosyltransferase-like PF550_18700 IPR000836 Phosphoribosyltransferase domain PF550_18700 IPR005904 Hypoxanthine phosphoribosyl transferase PF550_18710 IPR017937 Thioredoxin, conserved site PF550_18710 IPR018950 Disulphide bond isomerase, DsbC/G, N-terminal PF550_18710 IPR009094 Disulphide bond isomerase DsbC/G, N-terminal domain superfamily PF550_18710 IPR012336 Thioredoxin-like fold PF550_18710 IPR036249 Thioredoxin-like superfamily PF550_18710 IPR033954 Disulphide bond isomerase, DsbC/G PF550_18715 IPR002524 Cation efflux protein PF550_18715 IPR027470 Cation efflux protein, cytoplasmic domain PF550_18715 IPR036837 Cation efflux protein, cytoplasmic domain superfamily PF550_18715 IPR027469 Cation efflux transmembrane domain superfamily PF550_18720 IPR038390 Metal-sensitive transcriptional repressor superfamily PF550_18720 IPR003735 Metal-sensitive transcriptional repressor PF550_18725 IPR031168 TrmE-type guanine nucleotide-binding domain PF550_18725 IPR018948 GTP-binding protein TrmE, N-terminal PF550_18725 IPR006073 GTP binding domain PF550_18725 IPR004520 tRNA modification GTPase MnmE PF550_18725 IPR027368 tRNA modification GTPase MnmE domain 2 PF550_18725 IPR025867 MnmE, helical domain PF550_18725 IPR027417 P-loop containing nucleoside triphosphate hydrolase PF550_18725 IPR005225 Small GTP-binding protein domain PF550_18725 IPR027266 GTP-binding protein TrmE/Glycine cleavage system T protein, domain 1 PF550_18730 IPR038221 YidC, periplasmic domain superfamily PF550_18730 IPR001708 Membrane insertase YidC/ALB3/OXA1/COX18 PF550_18730 IPR038210 Membrane insertase YidC, periplasmic domain PF550_18730 IPR028055 Membrane insertase YidC/Oxa1, C-terminal PF550_18730 IPR019998 Membrane insertase YidC PF550_18730 IPR028053 Membrane insertase YidC, N-terminal PF550_18735 IPR002696 Putative membrane protein insertion efficiency factor PF550_18740 IPR020539 Ribonuclease P, conserved site PF550_18740 IPR000100 Ribonuclease P PF550_18740 IPR020568 Ribosomal protein S5 domain 2-type fold PF550_18740 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup PF550_18745 IPR000271 Ribosomal protein L34 PF550_18745 IPR020939 Ribosomal protein L34, conserved site PF550_18760 IPR000064 Endopeptidase, NLPC/P60 domain PF550_18760 IPR038765 Papain-like cysteine peptidase superfamily PF550_18865 IPR027417 P-loop containing nucleoside triphosphate hydrolase PF550_18865 IPR018449 NIL domain PF550_18865 IPR041701 Methionine import ATP-binding protein MetN, ATP-binding cassette domain PF550_18865 IPR017908 ABC transporter, methionine import, ATP-binding protein, MetN, C-terminal PF550_18865 IPR017871 ABC transporter, conserved site PF550_18865 IPR003439 ABC transporter-like PF550_18865 IPR026253 Methionine import ATP-binding protein MetN PF550_18865 IPR003593 AAA+ ATPase domain PF550_18870 IPR003115 ParB/Sulfiredoxin PF550_18870 IPR036086 ParB/Sulfiredoxin superfamily PF550_19000 IPR036397 Ribonuclease H superfamily PF550_19000 IPR012337 Ribonuclease H-like superfamily PF550_19000 IPR006054 DNA polymerase III epsilon subunit, exonuclease domain PF550_19000 IPR006309 DNA polymerase 3, epsilon subunit PF550_19000 IPR013520 Exonuclease, RNase T/DNA polymerase III PF550_19085 IPR029054 dUTPase-like PF550_19085 IPR036157 dUTPase-like superfamily PF550_19085 IPR008181 Deoxyuridine triphosphate nucleotidohydrolase PF550_19085 IPR033704 dUTPase, trimeric PF550_19110 IPR009078 Ferritin-like superfamily PF550_19110 IPR012348 Ribonucleotide reductase-like PF550_19110 IPR033909 Ribonucleotide reductase small subunit PF550_19110 IPR030475 Ribonucleotide reductase small subunit, acitve site PF550_19110 IPR000358 Ribonucleotide reductase small subunit family PF550_19115 IPR008926 Ribonucleotide reductase R1 subunit, N-terminal PF550_19115 IPR039718 Ribonucleoside-diphosphate reductase large subunit PF550_19115 IPR013509 Ribonucleotide reductase large subunit, N-terminal PF550_19115 IPR013346 Ribonucleotide reductase, class I , alpha subunit PF550_19115 IPR005144 ATP-cone domain PF550_19115 IPR000788 Ribonucleotide reductase large subunit, C-terminal PF550_19140 IPR027417 P-loop containing nucleoside triphosphate hydrolase PF550_19140 IPR038729 Rad50/SbcC-type AAA domain PF550_19185 IPR003593 AAA+ ATPase domain PF550_19185 IPR013765 DNA recombination and repair protein RecA PF550_19185 IPR020584 DNA recombination/repair protein RecA, conserved site PF550_19185 IPR027417 P-loop containing nucleoside triphosphate hydrolase PF550_19185 IPR020588 DNA recombination and repair protein RecA-like, ATP-binding domain PF550_19185 IPR023400 DNA recombination and repair protein RecA, C-terminal PF550_19185 IPR020587 DNA recombination and repair protein RecA, monomer-monomer interface PF550_19205 IPR004013 PHP domain PF550_19205 IPR036895 Uracil-DNA glycosylase-like domain superfamily PF550_19205 IPR004805 DNA polymerase III, alpha subunit PF550_19205 IPR003141 Polymerase/histidinol phosphatase, N-terminal PF550_19205 IPR040982 DNA polymerase III alpha subunit finger domain PF550_19205 IPR011708 Bacterial DNA polymerase III, alpha subunit, NTPase domain PF550_19205 IPR029460 DNA polymerase, helix-hairpin-helix motif PF550_19240 IPR023009 Tyrosine recombinase XerC/XerD PF550_19240 IPR011010 DNA breaking-rejoining enzyme, catalytic core PF550_19240 IPR013762 Integrase-like, catalytic domain superfamily PF550_19240 IPR002104 Integrase, catalytic domain PF550_19240 IPR010998 Integrase/recombinase, N-terminal PF550_19240 IPR004107 Integrase, SAM-like, N-terminal PF550_19265 IPR017665 Guanylate kinase PF550_19265 IPR020590 Guanylate kinase, conserved site PF550_19265 IPR008145 Guanylate kinase/L-type calcium channel beta subunit PF550_19265 IPR008144 Guanylate kinase-like domain PF550_19265 IPR027417 P-loop containing nucleoside triphosphate hydrolase PF550_19305 IPR030846 DNA primase DnaG, bacteria PF550_19305 IPR034151 Bacterial DnaG primase, TOPRIM domain PF550_19305 IPR036977 DNA Primase, CHC2-type zinc finger PF550_19305 IPR006171 TOPRIM domain PF550_19305 IPR019475 DNA primase, DnaB-helicase binding domain PF550_19305 IPR037068 DNA primase, catalytic core, N-terminal domain superfamily PF550_19305 IPR013264 DNA primase, catalytic core, N-terminal PF550_19305 IPR006295 DNA primase, DnaG PF550_19305 IPR002694 Zinc finger, CHC2-type