locus-tag class description PF550_00005 PF00308 Bacterial dnaA protein PF550_00005 PF08299 Bacterial dnaA protein helix-turn-helix PF550_00005 PF11638 DnaA N-terminal domain PF550_00010 PF00712 DNA polymerase III beta subunit, N-terminal domain PF550_00010 PF02767 DNA polymerase III beta subunit, central domain PF550_00010 PF02768 DNA polymerase III beta subunit, C-terminal domain PF550_00015 PF02463 RecF/RecN/SMC N terminal domain PF550_00020 PF00204 DNA gyrase B PF550_00020 PF00986 DNA gyrase B subunit, carboxyl terminus PF550_00020 PF18053 DNA gyrase B subunit insert domain PF550_00020 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PF550_00020 PF01751 Toprim domain PF550_00030 PF09335 SNARE associated Golgi protein PF550_00035 PF00005 ABC transporter PF550_00035 PF12848 ABC transporter PF550_00055 PF01521 Iron-sulphur cluster biosynthesis PF550_00060 PF00561 alpha/beta hydrolase fold PF550_00065 PF03702 Anhydro-N-acetylmuramic acid kinase PF550_00070 PF00579 tRNA synthetases class I (W and Y) PF550_00110 PF00209 Sodium:neurotransmitter symporter family PF550_00120 PF01189 16S rRNA methyltransferase RsmB/F PF550_00120 PF01029 NusB family PF550_00125 PF02911 Formyl transferase, C-terminal domain PF550_00125 PF00551 Formyl transferase PF550_00130 PF00920 Dehydratase family PF550_00145 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family PF550_00145 PF03466 LysR substrate binding domain PF550_00150 PF00860 Permease family PF550_00155 PF00311 Phosphoenolpyruvate carboxylase PF550_00165 PF13610 DDE domain PF550_00180 PF13614 AAA domain PF550_00190 PF01722 BolA-like protein PF550_00210 PF13817 IS66 C-terminal element PF550_00210 PF13005 zinc-finger binding domain of transposase IS66 PF550_00210 PF13007 Transposase C of IS166 homeodomain PF550_00210 PF03050 Transposase IS66 family PF550_00230 PF16363 GDP-mannose 4,6 dehydratase PF550_00245 PF00501 AMP-binding enzyme PF550_00245 PF13193 AMP-binding enzyme C-terminal domain PF550_00245 PF00668 Condensation domain PF550_00245 PF00550 Phosphopantetheine attachment site PF550_00245 PF00975 Thioesterase domain PF550_00250 PF00975 Thioesterase domain PF550_00250 PF14765 Polyketide synthase dehydratase PF550_00250 PF00550 Phosphopantetheine attachment site PF550_00250 PF08242 Methyltransferase domain PF550_00250 PF02801 Beta-ketoacyl synthase, C-terminal domain PF550_00250 PF00109 Beta-ketoacyl synthase, N-terminal domain PF550_00250 PF16197 Ketoacyl-synthetase C-terminal extension PF550_00255 PF00441 Acyl-CoA dehydrogenase, C-terminal domain PF550_00255 PF02770 Acyl-CoA dehydrogenase, middle domain PF550_00255 PF02771 Acyl-CoA dehydrogenase, N-terminal domain PF550_00260 PF00501 AMP-binding enzyme PF550_00265 PF00196 Bacterial regulatory proteins, luxR family PF550_00265 PF03472 Autoinducer binding domain PF550_00275 PF00765 Autoinducer synthase PF550_00280 PF07690 Major Facilitator Superfamily PF550_00280 PF00083 Sugar (and other) transporter PF550_00285 PF00378 Enoyl-CoA hydratase/isomerase PF550_00290 PF00378 Enoyl-CoA hydratase/isomerase PF550_00295 PF02771 Acyl-CoA dehydrogenase, N-terminal domain PF550_00295 PF00441 Acyl-CoA dehydrogenase, C-terminal domain PF550_00295 PF02770 Acyl-CoA dehydrogenase, middle domain PF550_00300 PF00501 AMP-binding enzyme PF550_00300 PF13193 AMP-binding enzyme C-terminal domain PF550_00305 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase PF550_00305 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase PF550_00310 PF00171 Aldehyde dehydrogenase family PF550_00320 PF00324 Amino acid permease PF550_00330 PF13610 DDE domain PF550_00345 PF00226 DnaJ domain PF550_00345 PF00684 DnaJ central domain PF550_00345 PF01556 DnaJ C terminal domain PF550_00355 PF05173 Dihydrodipicolinate reductase, C-terminus PF550_00355 PF01113 Dihydrodipicolinate reductase, N-terminus PF550_00365 PF07690 Major Facilitator Superfamily PF550_00370 PF00248 Aldo/keto reductase family PF550_00375 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family PF550_00375 PF03466 LysR substrate binding domain PF550_00390 PF00155 Aminotransferase class I and II PF550_00390 PF00392 Bacterial regulatory proteins, gntR family PF550_00395 PF08240 Alcohol dehydrogenase GroES-like domain PF550_00395 PF00107 Zinc-binding dehydrogenase PF550_00400 PF03352 Methyladenine glycosylase PF550_00415 PF10576 Iron-sulfur binding domain of endonuclease III PF550_00415 PF00633 Helix-hairpin-helix motif PF550_00415 PF00730 HhH-GPD superfamily base excision DNA repair protein PF550_00415 PF14815 NUDIX domain PF550_00430 PF07043 Protein of unknown function (DUF1328) PF550_00435 PF03692 Putative zinc- or iron-chelating domain PF550_00440 PF07995 Glucose / Sorbosone dehydrogenase PF550_00445 PF00004 ATPase family associated with various cellular activities (AAA) PF550_00445 PF16193 AAA C-terminal domain PF550_00445 PF12002 MgsA AAA+ ATPase C terminal PF550_00450 PF01226 Formate/nitrite transporter PF550_00460 PF01259 SAICAR synthetase PF550_00470 PF00701 Dihydrodipicolinate synthetase family PF550_00475 PF00857 Isochorismatase family PF550_00480 PF01758 Sodium Bile acid symporter family PF550_00490 PF04463 Protein of unknown function (DUF523) PF550_00495 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily PF550_00505 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily PF550_00510 PF14497 Glutathione S-transferase, C-terminal domain PF550_00510 PF02798 Glutathione S-transferase, N-terminal domain PF550_00520 PF00324 Amino acid permease PF550_00530 PF07683 Cobalamin synthesis protein cobW C-terminal domain PF550_00530 PF02492 CobW/HypB/UreG, nucleotide-binding domain PF550_00540 PF07702 UTRA domain PF550_00540 PF00392 Bacterial regulatory proteins, gntR family PF550_00555 PF13610 DDE domain PF550_00560 PF00005 ABC transporter PF550_00565 PF01636 Phosphotransferase enzyme family PF550_00570 PF10706 Aminoglycoside-2''-adenylyltransferase PF550_00575 PF13610 DDE domain PF550_00585 PF09335 SNARE associated Golgi protein PF550_00590 PF07681 DoxX PF550_00595 PF04286 Protein of unknown function (DUF445) PF550_00600 PF00958 GMP synthase C terminal domain PF550_00600 PF02540 NAD synthase PF550_00600 PF00117 Glutamine amidotransferase class-I PF550_00605 PF01909 Nucleotidyltransferase domain PF550_00605 PF13427 Domain of unknown function (DUF4111) PF550_00610 PF03551 Transcriptional regulator PadR-like family PF550_00620 PF02678 Pirin PF550_00620 PF05726 Pirin C-terminal cupin domain PF550_00640 PF03485 Arginyl tRNA synthetase N terminal domain PF550_00640 PF05746 DALR anticodon binding domain PF550_00640 PF00750 tRNA synthetases class I (R) PF550_00645 PF00390 Malic enzyme, N-terminal domain PF550_00645 PF03949 Malic enzyme, NAD binding domain PF550_00655 PF04261 Dyp-type peroxidase family PF550_00660 PF01810 LysE type translocator PF550_00665 PF00950 ABC 3 transport family PF550_00670 PF00005 ABC transporter PF550_00690 PF00119 ATP synthase A chain PF550_00695 PF00137 ATP synthase subunit C PF550_00700 PF00430 ATP synthase B/B' CF(0) PF550_00705 PF00213 ATP synthase delta (OSCP) subunit PF550_00710 PF02874 ATP synthase alpha/beta family, beta-barrel domain PF550_00710 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain PF550_00710 PF00306 ATP synthase alpha/beta chain, C terminal domain PF550_00715 PF00231 ATP synthase PF550_00720 PF02874 ATP synthase alpha/beta family, beta-barrel domain PF550_00720 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain PF550_00725 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain PF550_00730 PF11008 Protein of unknown function (DUF2846) PF550_00740 PF00255 Glutathione peroxidase PF550_00750 PF07690 Major Facilitator Superfamily PF550_00755 PF00440 Bacterial regulatory proteins, tetR family PF550_00760 PF00892 EamA-like transporter family PF550_00765 PF01300 Telomere recombination PF550_00770 PF02481 DNA recombination-mediator protein A PF550_00770 PF17782 DprA winged helix domain PF550_00780 PF01327 Polypeptide deformylase PF550_00840 PF00291 Pyridoxal-phosphate dependent enzyme PF550_00850 PF03358 NADPH-dependent FMN reductase PF550_00870 PF08497 Radical SAM N-terminal PF550_00870 PF11842 Domain of unknown function (DUF3362) PF550_00870 PF04055 Radical SAM superfamily PF550_00890 PF11799 impB/mucB/samB family C-terminal domain PF550_00890 PF11798 IMS family HHH motif PF550_00890 PF00817 impB/mucB/samB family PF550_00900 PF07690 Major Facilitator Superfamily PF550_00905 PF03641 Possible lysine decarboxylase PF550_00910 PF03741 Integral membrane protein TerC family PF550_00910 PF03471 Transporter associated domain PF550_00915 PF02810 SEC-C motif PF550_00920 PF03458 UPF0126 domain PF550_00925 PF07690 Major Facilitator Superfamily PF550_00930 PF03989 DNA gyrase C-terminal domain, beta-propeller PF550_00930 PF00521 DNA gyrase/topoisomerase IV, subunit A PF550_00935 PF00501 AMP-binding enzyme PF550_00935 PF13193 AMP-binding enzyme C-terminal domain PF550_00950 PF00719 Inorganic pyrophosphatase PF550_00955 PF03573 outer membrane porin, OprD family PF550_00970 PF00701 Dihydrodipicolinate synthetase family PF550_00975 PF00596 Class II Aldolase and Adducin N-terminal domain PF550_00980 PF00155 Aminotransferase class I and II PF550_00980 PF00392 Bacterial regulatory proteins, gntR family PF550_00995 PF00665 Integrase core domain PF550_01020 PF13817 IS66 C-terminal element PF550_01020 PF13007 Transposase C of IS166 homeodomain PF550_01020 PF03050 Transposase IS66 family PF550_01020 PF13005 zinc-finger binding domain of transposase IS66 PF550_01030 PF00440 Bacterial regulatory proteins, tetR family PF550_01050 PF02678 Pirin PF550_01050 PF17954 Quercetinase C-terminal cupin domain PF550_01055 PF00291 Pyridoxal-phosphate dependent enzyme PF550_01060 PF08348 YheO-like PAS domain PF550_01060 PF13309 HTH domain PF550_01070 PF00501 AMP-binding enzyme PF550_01070 PF13193 AMP-binding enzyme C-terminal domain PF550_01070 PF00668 Condensation domain PF550_01070 PF00550 Phosphopantetheine attachment site PF550_01075 PF00501 AMP-binding enzyme PF550_01075 PF13193 AMP-binding enzyme C-terminal domain PF550_01075 PF00668 Condensation domain PF550_01075 PF00550 Phosphopantetheine attachment site PF550_01075 PF00975 Thioesterase domain PF550_01080 PF01032 FecCD transport family PF550_01085 PF01032 FecCD transport family PF550_01090 PF00005 ABC transporter PF550_01095 PF01497 Periplasmic binding protein PF550_01100 PF07715 TonB-dependent Receptor Plug Domain PF550_01100 PF00593 TonB dependent receptor PF550_01105 PF13434 L-lysine 6-monooxygenase (NADPH-requiring) PF550_01140 PF00672 HAMP domain PF550_01140 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PF550_01140 PF00512 His Kinase A (phospho-acceptor) domain PF550_01145 PF00072 Response regulator receiver domain PF550_01145 PF00486 Transcriptional regulatory protein, C terminal PF550_01155 PF00394 Multicopper oxidase PF550_01155 PF07731 Multicopper oxidase PF550_01155 PF07732 Multicopper oxidase PF550_01180 PF07670 Nucleoside recognition PF550_01180 PF02421 Ferrous iron transport protein B PF550_01180 PF07664 Ferrous iron transport protein B C terminus PF550_01195 PF13411 MerR HTH family regulatory protein PF550_01245 PF00543 Nitrogen regulatory protein P-II PF550_01250 PF00909 Ammonium Transporter Family PF550_01255 PF03477 ATP cone domain PF550_01260 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region PF550_01260 PF01872 RibD C-terminal domain PF550_01270 PF00677 Lumazine binding domain PF550_01290 PF00883 Cytosol aminopeptidase family, catalytic domain PF550_01290 PF02789 Cytosol aminopeptidase family, N-terminal domain PF550_01300 PF03739 Lipopolysaccharide export system permease LptF/LptG PF550_01305 PF06415 BPG-independent PGAM N-terminus (iPGM_N) PF550_01305 PF01676 Metalloenzyme superfamily PF550_01310 PF03572 Peptidase family S41 PF550_01310 PF00595 PDZ domain PF550_01315 PF02954 Bacterial regulatory protein, Fis family PF550_01315 PF00072 Response regulator receiver domain PF550_01315 PF00158 Sigma-54 interaction domain PF550_01320 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PF550_01320 PF00512 His Kinase A (phospho-acceptor) domain PF550_01325 PF00072 Response regulator receiver domain PF550_01325 PF00196 Bacterial regulatory proteins, luxR family PF550_01330 PF00768 D-alanyl-D-alanine carboxypeptidase PF550_01335 PF00291 Pyridoxal-phosphate dependent enzyme PF550_01340 PF01842 ACT domain PF550_01340 PF03447 Homoserine dehydrogenase, NAD binding domain PF550_01340 PF00742 Homoserine dehydrogenase PF550_01345 PF13098 Thioredoxin-like domain PF550_01345 PF10411 Disulfide bond isomerase protein N-terminus PF550_01350 PF00589 Phage integrase family PF550_01350 PF02899 Phage integrase, N-terminal SAM-like domain PF550_01360 PF07664 Ferrous iron transport protein B C terminus PF550_01360 PF02421 Ferrous iron transport protein B PF550_01360 PF07670 Nucleoside recognition PF550_01370 PF02875 Mur ligase family, glutamate ligase domain PF550_01370 PF08245 Mur ligase middle domain PF550_01375 PF01098 Cell cycle protein PF550_01380 PF00749 tRNA synthetases class I (E and Q), catalytic domain PF550_01385 PF01258 Prokaryotic dksA/traR C4-type zinc finger PF550_01390 PF00149 Calcineurin-like phosphoesterase PF550_01395 PF00293 NUDIX domain PF550_01400 PF13667 ThiC-associated domain PF550_01400 PF01964 Radical SAM ThiC family PF550_01415 PF00892 EamA-like transporter family PF550_01420 PF02321 Outer membrane efflux protein PF550_01425 PF01895 PhoU domain PF550_01430 PF04362 Bacterial Fe(2+) trafficking PF550_01435 PF00206 Lyase PF550_01435 PF14698 Argininosuccinate lyase C-terminal PF550_01440 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PF550_01440 PF07694 5TMR of 5TMR-LYT PF550_01440 PF06580 Histidine kinase PF550_01445 PF04397 LytTr DNA-binding domain PF550_01445 PF00072 Response regulator receiver domain PF550_01450 PF03900 Porphobilinogen deaminase, C-terminal domain PF550_01450 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain PF550_01475 PF00816 H-NS histone family PF550_01490 PF00263 Bacterial type II and III secretion system protein PF550_01490 PF03958 Bacterial type II/III secretion system short domain PF550_01495 PF12401 Protein of unknown function (DUF2662) PF550_01495 PF00498 FHA domain PF550_01500 PF13419 Haloacid dehalogenase-like hydrolase PF550_01505 PF00425 chorismate binding enzyme PF550_01505 PF04715 Anthranilate synthase component I, N terminal region PF550_01530 PF00009 Elongation factor Tu GTP binding domain PF550_01530 PF03144 Elongation factor Tu domain 2 PF550_01530 PF03143 Elongation factor Tu C-terminal domain PF550_01540 PF00584 SecE/Sec61-gamma subunits of protein translocation complex PF550_01545 PF02357 Transcription termination factor nusG PF550_01545 PF00467 KOW motif PF550_01550 PF00298 Ribosomal protein L11, RNA binding domain PF550_01550 PF03946 Ribosomal protein L11, N-terminal domain PF550_01555 PF00687 Ribosomal protein L1p/L10e family PF550_01560 PF00466 Ribosomal protein L10 PF550_01565 PF16320 Ribosomal protein L7/L12 dimerisation domain PF550_01565 PF00542 Ribosomal protein L7/L12 C-terminal domain PF550_01570 PF04563 RNA polymerase beta subunit PF550_01570 PF04561 RNA polymerase Rpb2, domain 2 PF550_01570 PF04565 RNA polymerase Rpb2, domain 3 PF550_01570 PF10385 RNA polymerase beta subunit external 1 domain PF550_01570 PF00562 RNA polymerase Rpb2, domain 6 PF550_01570 PF04560 RNA polymerase Rpb2, domain 7 PF550_01575 PF04997 RNA polymerase Rpb1, domain 1 PF550_01575 PF00623 RNA polymerase Rpb1, domain 2 PF550_01575 PF05000 RNA polymerase Rpb1, domain 4 PF550_01575 PF04998 RNA polymerase Rpb1, domain 5 PF550_01575 PF04983 RNA polymerase Rpb1, domain 3 PF550_01600 PF13726 Na+-H+ antiporter family PF550_01600 PF03553 Na+/H+ antiporter family PF550_01615 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PF550_01615 PF00183 Hsp90 protein PF550_01630 PF01323 DSBA-like thioredoxin domain PF550_01640 PF13411 MerR HTH family regulatory protein PF550_01660 PF00108 Thiolase, N-terminal domain PF550_01660 PF02803 Thiolase, C-terminal domain PF550_01665 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain PF550_01665 PF00378 Enoyl-CoA hydratase/isomerase PF550_01665 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain PF550_01680 PF01541 GIY-YIG catalytic domain PF550_01680 PF02151 UvrB/uvrC motif PF550_01680 PF08459 UvrC Helix-hairpin-helix N-terminal PF550_01690 PF01066 CDP-alcohol phosphatidyltransferase PF550_01695 PF02805 Metal binding domain of Ada PF550_01695 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain PF550_01695 PF12833 Helix-turn-helix domain PF550_01695 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain PF550_01720 PF13533 Biotin-lipoyl like PF550_01725 PF03652 Holliday junction resolvase PF550_01730 PF02622 Uncharacterized ACR, COG1678 PF550_01735 PF02463 RecF/RecN/SMC N terminal domain PF550_01745 PF06865 Pyrimidine/purine nucleoside phosphorylase PF550_01750 PF08032 RNA 2'-O ribose methyltransferase substrate binding PF550_01750 PF00588 SpoU rRNA Methylase family PF550_01760 PF01121 Dephospho-CoA kinase PF550_01765 PF01478 Type IV leader peptidase family PF550_01765 PF06750 Bacterial Peptidase A24 N-terminal domain PF550_01770 PF00482 Type II secretion system (T2SS), protein F PF550_01775 PF00437 Type II/IV secretion system protein PF550_01775 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain PF550_01780 PF00121 Triosephosphate isomerase PF550_01785 PF03840 Preprotein translocase SecG subunit PF550_01805 PF02576 RimP N-terminal domain PF550_01805 PF17384 RimP C-terminal SH3 domain PF550_01810 PF00575 S1 RNA binding domain PF550_01810 PF08529 NusA N-terminal domain PF550_01810 PF13184 NusA-like KH domain PF550_01815 PF08364 Bacterial translation initiation factor IF-2 associated region PF550_01815 PF11987 Translation-initiation factor 2 PF550_01815 PF04760 Translation initiation factor IF-2, N-terminal region PF550_01815 PF00009 Elongation factor Tu GTP binding domain PF550_01820 PF02033 Ribosome-binding factor A PF550_01825 PF03334 Na+/H+ antiporter subunit PF550_01830 PF04066 Multiple resistance and pH regulation protein F (MrpF / PhaF) PF550_01835 PF01899 Na+/H+ ion antiporter subunit PF550_01840 PF00361 Proton-conducting membrane transporter PF550_01845 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L PF550_01850 PF13244 Domain of unknown function (DUF4040) PF550_01850 PF04039 Domain related to MnhB subunit of Na+/H+ antiporter PF550_01850 PF00361 Proton-conducting membrane transporter PF550_01850 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus PF550_01865 PF01502 Phosphoribosyl-AMP cyclohydrolase PF550_01870 PF01494 FAD binding domain PF550_01875 PF03109 ABC1 family PF550_01885 PF01209 ubiE/COQ5 methyltransferase family PF550_01895 PF03976 Polyphosphate kinase 2 (PPK2) PF550_01905 PF17946 RecC C-terminal domain PF550_01910 PF12705 PD-(D/E)XK nuclease superfamily PF550_01910 PF00580 UvrD/REP helicase N-terminal domain PF550_01910 PF13361 UvrD-like helicase C-terminal domain PF550_01915 PF13538 UvrD-like helicase C-terminal domain PF550_01920 PF00144 Beta-lactamase PF550_01925 PF00312 Ribosomal protein S15 PF550_01930 PF03725 3' exoribonuclease family, domain 2 PF550_01930 PF00575 S1 RNA binding domain PF550_01930 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain PF550_01930 PF01138 3' exoribonuclease family, domain 1 PF550_01930 PF00013 KH domain PF550_01935 PF01544 CorA-like Mg2+ transporter protein PF550_01945 PF01556 DnaJ C terminal domain PF550_01945 PF00226 DnaJ domain PF550_01955 PF01430 Hsp33 protein PF550_01960 PF00999 Sodium/hydrogen exchanger family PF550_01960 PF02254 TrkA-N domain PF550_01965 PF18319 PriA DNA helicase Cys-rich region (CRR) domain PF550_01965 PF18074 Primosomal protein N C-terminal domain PF550_01965 PF17764 3′ DNA-binding domain (3′BD) PF550_01965 PF00270 DEAD/DEAH box helicase PF550_01965 PF00271 Helicase conserved C-terminal domain PF550_01970 PF00482 Type II secretion system (T2SS), protein F PF550_01975 PF07963 Prokaryotic N-terminal methylation motif PF550_01975 PF08334 Type II secretion system (T2SS), protein G PF550_01985 PF01588 Putative tRNA binding domain PF550_01990 PF00795 Carbon-nitrogen hydrolase PF550_01995 PF00571 CBS domain PF550_01995 PF03471 Transporter associated domain PF550_02000 PF01206 Sulfurtransferase TusA PF550_02020 PF01177 Asp/Glu/Hydantoin racemase PF550_02030 PF00762 Ferrochelatase PF550_02035 PF00753 Metallo-beta-lactamase superfamily PF550_02040 PF03884 DNA gyrase inhibitor YacG PF550_02050 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster PF550_02050 PF07992 Pyridine nucleotide-disulphide oxidoreductase PF550_02050 PF13247 4Fe-4S dicluster domain PF550_02060 PF02537 CrcB-like protein, Camphor Resistance (CrcB) PF550_02085 PF13005 zinc-finger binding domain of transposase IS66 PF550_02085 PF13007 Transposase C of IS166 homeodomain PF550_02085 PF13817 IS66 C-terminal element PF550_02085 PF03050 Transposase IS66 family PF550_02095 PF13817 IS66 C-terminal element PF550_02095 PF03050 Transposase IS66 family PF550_02095 PF13005 zinc-finger binding domain of transposase IS66 PF550_02095 PF13007 Transposase C of IS166 homeodomain PF550_02115 PF03109 ABC1 family PF550_02120 PF02771 Acyl-CoA dehydrogenase, N-terminal domain PF550_02120 PF08028 Acyl-CoA dehydrogenase, C-terminal domain PF550_02125 PF08028 Acyl-CoA dehydrogenase, C-terminal domain PF550_02125 PF02770 Acyl-CoA dehydrogenase, middle domain PF550_02125 PF02771 Acyl-CoA dehydrogenase, N-terminal domain PF550_02130 PF01554 MatE PF550_02140 PF06969 HemN C-terminal domain PF550_02140 PF04055 Radical SAM superfamily PF550_02150 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family PF550_02150 PF03466 LysR substrate binding domain PF550_02165 PF13193 AMP-binding enzyme C-terminal domain PF550_02165 PF00501 AMP-binding enzyme PF550_02170 PF12111 Polyribonucleotide phosphorylase C terminal PF550_02170 PF10150 Ribonuclease E/G family PF550_02170 PF00575 S1 RNA binding domain PF550_02175 PF01479 S4 domain PF550_02175 PF00849 RNA pseudouridylate synthase PF550_02180 PF13419 Haloacid dehalogenase-like hydrolase PF550_02185 PF08279 HTH domain PF550_02185 PF13280 WYL domain PF550_02190 PF02798 Glutathione S-transferase, N-terminal domain PF550_02200 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family PF550_02200 PF03466 LysR substrate binding domain PF550_02205 PF12706 Beta-lactamase superfamily domain PF550_02210 PF00141 Peroxidase PF550_02215 PF00391 PEP-utilising enzyme, mobile domain PF550_02215 PF02896 PEP-utilising enzyme, TIM barrel domain PF550_02215 PF01590 GAF domain PF550_02215 PF05524 PEP-utilising enzyme, N-terminal PF550_02220 PF00293 NUDIX domain PF550_02240 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family PF550_02240 PF03466 LysR substrate binding domain PF550_02250 PF00330 Aconitase family (aconitate hydratase) PF550_02255 PF00694 Aconitase C-terminal domain PF550_02265 PF00180 Isocitrate/isopropylmalate dehydrogenase PF550_02280 PF01176 Translation initiation factor 1A / IF-1 PF550_02290 PF01416 tRNA pseudouridine synthase PF550_02310 PF02774 Semialdehyde dehydrogenase, dimerisation domain PF550_02310 PF01118 Semialdehyde dehydrogenase, NAD binding domain PF550_02320 PF00375 Sodium:dicarboxylate symporter family PF550_02330 PF03279 Bacterial lipid A biosynthesis acyltransferase PF550_02335 PF01810 LysE type translocator PF550_02340 PF00005 ABC transporter PF550_02340 PF16326 ABC transporter C-terminal domain PF550_02340 PF12848 ABC transporter PF550_02345 PF04102 SlyX PF550_02350 PF00107 Zinc-binding dehydrogenase PF550_02350 PF08240 Alcohol dehydrogenase GroES-like domain PF550_02355 PF01638 HxlR-like helix-turn-helix PF550_02365 PF01131 DNA topoisomerase PF550_02365 PF01751 Toprim domain PF550_02365 PF01396 Topoisomerase DNA binding C4 zinc finger PF550_02365 PF08272 Topoisomerase I zinc-ribbon-like PF550_02380 PF00580 UvrD/REP helicase N-terminal domain PF550_02380 PF13361 UvrD-like helicase C-terminal domain PF550_02385 PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) PF550_02405 PF00999 Sodium/hydrogen exchanger family PF550_02405 PF02254 TrkA-N domain PF550_02410 PF00471 Ribosomal protein L33 PF550_02415 PF00830 Ribosomal L28 family PF550_02420 PF00171 Aldehyde dehydrogenase family PF550_02430 PF00551 Formyl transferase PF550_02430 PF01842 ACT domain PF550_02440 PF01618 MotA/TolQ/ExbB proton channel family PF550_02450 PF01625 Peptide methionine sulfoxide reductase PF550_02460 PF00186 Dihydrofolate reductase PF550_02465 PF00303 Thymidylate synthase PF550_02480 PF01790 Prolipoprotein diacylglyceryl transferase PF550_02500 PF00902 Sec-independent protein translocase protein (TatC) PF550_02505 PF02416 mttA/Hcf106 family PF550_02510 PF02416 mttA/Hcf106 family PF550_02520 PF01725 Ham1 family PF550_02530 PF00561 alpha/beta hydrolase fold PF550_02530 PF07021 Methionine biosynthesis protein MetW PF550_02535 PF00561 alpha/beta hydrolase fold PF550_02540 PF00682 HMGL-like PF550_02540 PF08502 LeuA allosteric (dimerisation) domain PF550_02545 PF13640 2OG-Fe(II) oxygenase superfamily PF550_02545 PF18331 PKHD-type hydroxylase C-terminal domain PF550_02550 PF07715 TonB-dependent Receptor Plug Domain PF550_02550 PF00593 TonB dependent receptor PF550_02555 PF05697 Bacterial trigger factor protein (TF) PF550_02555 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase PF550_02555 PF05698 Bacterial trigger factor protein (TF) C-terminus PF550_02560 PF00574 Clp protease PF550_02565 PF07724 AAA domain (Cdc48 subfamily) PF550_02565 PF10431 C-terminal, D2-small domain, of ClpB protein PF550_02565 PF06689 ClpX C4-type zinc finger PF550_02580 PF05683 Fumarase C-terminus PF550_02580 PF05681 Fumarate hydratase (Fumerase) PF550_02585 PF01515 Phosphate acetyl/butaryl transferase PF550_02585 PF07085 DRTGG domain PF550_02590 PF00871 Acetokinase family PF550_02595 PF00920 Dehydratase family PF550_02600 PF01081 KDPG and KHG aldolase PF550_02605 PF02447 GntP family permease PF550_02610 PF01202 Shikimate kinase PF550_02615 PF00171 Aldehyde dehydrogenase family PF550_02620 PF00171 Aldehyde dehydrogenase family PF550_02625 PF00561 alpha/beta hydrolase fold PF550_02635 PF00933 Glycosyl hydrolase family 3 N terminal domain PF550_02640 PF00595 PDZ domain PF550_02640 PF03572 Peptidase family S41 PF550_02640 PF17804 Tail specific protease N-terminal domain PF550_02640 PF11818 C-terminal domain of tail specific protease (DUF3340) PF550_02645 PF13439 Glycosyltransferase Family 4 PF550_02645 PF00534 Glycosyl transferases group 1 PF550_02650 PF01569 PAP2 superfamily PF550_02655 PF04384 Iron-sulphur cluster assembly PF550_02660 PF00334 Nucleoside diphosphate kinase PF550_02665 PF04055 Radical SAM superfamily PF550_02675 PF13464 Domain of unknown function (DUF4115) PF550_02680 PF04551 GcpE protein PF550_02685 PF03129 Anticodon binding domain PF550_02685 PF13393 Histidyl-tRNA synthetase PF550_02695 PF13360 PQQ-like domain PF550_02700 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal PF550_02700 PF01926 50S ribosome-binding GTPase PF550_02710 PF02556 Preprotein translocase subunit SecB PF550_02715 PF00462 Glutaredoxin PF550_02725 PF03193 RsgA GTPase PF550_02730 PF00929 Exonuclease PF550_02745 PF02321 Outer membrane efflux protein PF550_02750 PF00005 ABC transporter PF550_02750 PF02687 FtsX-like permease family PF550_02750 PF12704 MacB-like periplasmic core domain PF550_02755 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion PF550_02770 PF08264 Anticodon-binding domain of tRNA PF550_02770 PF13603 Leucyl-tRNA synthetase, Domain 2 PF550_02770 PF00133 tRNA synthetases class I (I, L, M and V) PF550_02770 PF09334 tRNA synthetases class I (M) PF550_02780 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain PF550_02780 PF00205 Thiamine pyrophosphate enzyme, central domain PF550_02780 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain PF550_02785 PF10369 Small subunit of acetolactate synthase PF550_02790 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain PF550_02790 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain PF550_02815 PF03144 Elongation factor Tu domain 2 PF550_02815 PF16658 Class II release factor RF3, C-terminal domain PF550_02815 PF00009 Elongation factor Tu GTP binding domain PF550_02830 PF01026 TatD related DNase PF550_02835 PF00694 Aconitase C-terminal domain PF550_02835 PF00330 Aconitase family (aconitate hydratase) PF550_02840 PF00899 ThiF family PF550_02850 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family PF550_02850 PF03466 LysR substrate binding domain PF550_02860 PF01207 Dihydrouridine synthase (Dus) PF550_02865 PF07690 Major Facilitator Superfamily PF550_02875 PF00892 EamA-like transporter family PF550_02880 PF01262 Alanine dehydrogenase/PNT, C-terminal domain PF550_02880 PF05222 Alanine dehydrogenase/PNT, N-terminal domain PF550_02885 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch PF550_02890 PF02233 NAD(P) transhydrogenase beta subunit PF550_02895 PF00106 short chain dehydrogenase PF550_02905 PF01261 Xylose isomerase-like TIM barrel PF550_02910 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase PF550_02910 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase PF550_02915 PF00378 Enoyl-CoA hydratase/isomerase PF550_02920 PF00072 Response regulator receiver domain PF550_02920 PF01627 Hpt domain PF550_02920 PF00512 His Kinase A (phospho-acceptor) domain PF550_02920 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PF550_02920 PF00672 HAMP domain PF550_02920 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) PF550_02925 PF00291 Pyridoxal-phosphate dependent enzyme PF550_02935 PF05958 tRNA (Uracil-5-)-methyltransferase PF550_02940 PF13291 ACT domain PF550_02940 PF04607 Region found in RelA / SpoT proteins PF550_02940 PF02824 TGS domain PF550_02950 PF03819 MazG nucleotide pyrophosphohydrolase domain PF550_02960 PF12626 Polymerase A arginine-rich C-terminus PF550_02960 PF12627 Probable RNA and SrmB- binding site of polymerase A PF550_02960 PF01743 Poly A polymerase head domain PF550_02965 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) PF550_02970 PF02548 Ketopantoate hydroxymethyltransferase PF550_02975 PF02569 Pantoate-beta-alanine ligase PF550_02980 PF03668 P-loop ATPase protein family PF550_02985 PF00381 PTS HPr component phosphorylation site PF550_02990 PF04751 Protein of unknown function (DUF615) PF550_02995 PF00501 AMP-binding enzyme PF550_02995 PF13193 AMP-binding enzyme C-terminal domain PF550_03000 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain PF550_03000 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) PF550_03000 PF02824 TGS domain PF550_03000 PF03129 Anticodon binding domain PF550_03005 PF05198 Translation initiation factor IF-3, N-terminal domain PF550_03005 PF00707 Translation initiation factor IF-3, C-terminal domain PF550_03010 PF02798 Glutathione S-transferase, N-terminal domain PF550_03010 PF00043 Glutathione S-transferase, C-terminal domain PF550_03015 PF09335 SNARE associated Golgi protein PF550_03020 PF07690 Major Facilitator Superfamily PF550_03030 PF01632 Ribosomal protein L35 PF550_03035 PF00453 Ribosomal protein L20 PF550_03055 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain PF550_03055 PF01409 tRNA synthetases class II core domain (F) PF550_03060 PF01588 Putative tRNA binding domain PF550_03060 PF03483 B3/4 domain PF550_03060 PF03484 tRNA synthetase B5 domain PF550_03060 PF03147 Ferredoxin-fold anticodon binding domain PF550_03060 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain PF550_03065 PF00216 Bacterial DNA-binding protein PF550_03080 PF07497 Rho termination factor, RNA-binding domain PF550_03080 PF07498 Rho termination factor, N-terminal domain PF550_03080 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain PF550_03085 PF00085 Thioredoxin PF550_03090 PF02541 Ppx/GppA phosphatase family PF550_03095 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit PF550_03100 PF11734 TilS substrate C-terminal domain PF550_03100 PF09179 TilS substrate binding domain PF550_03100 PF01171 PP-loop family PF550_03105 PF03807 NADP oxidoreductase coenzyme F420-dependent PF550_03105 PF14748 Pyrroline-5-carboxylate reductase dimerisation PF550_03110 PF02325 YGGT family PF550_03115 PF01367 5'-3' exonuclease, C-terminal SAM fold PF550_03115 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain PF550_03115 PF00476 DNA polymerase family A PF550_03115 PF01612 3'-5' exonuclease PF550_03135 PF00437 Type II/IV secretion system protein PF550_03140 PF02566 OsmC-like protein PF550_03145 PF01047 MarR family PF550_03155 PF00795 Carbon-nitrogen hydrolase PF550_03200 PF04963 Sigma-54 factor, core binding domain PF550_03200 PF00309 Sigma-54 factor, Activator interacting domain (AID) PF550_03200 PF04552 Sigma-54, DNA binding domain PF550_03205 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein PF550_03210 PF01722 BolA-like protein PF550_03215 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) PF550_03220 PF01634 ATP phosphoribosyltransferase PF550_03225 PF00815 Histidinol dehydrogenase PF550_03230 PF00155 Aminotransferase class I and II PF550_03235 PF04715 Anthranilate synthase component I, N terminal region PF550_03235 PF00425 chorismate binding enzyme PF550_03275 PF13817 IS66 C-terminal element PF550_03275 PF13005 zinc-finger binding domain of transposase IS66 PF550_03275 PF13007 Transposase C of IS166 homeodomain PF550_03275 PF03050 Transposase IS66 family PF550_03295 PF00293 NUDIX domain PF550_03300 PF00132 Bacterial transferase hexapeptide (six repeats) PF550_03305 PF00814 Glycoprotease family PF550_03310 PF04445 Putative SAM-dependent methyltransferase PF550_03320 PF00756 Putative esterase PF550_03330 PF00834 Ribulose-phosphate 3 epimerase family PF550_03345 PF07732 Multicopper oxidase PF550_03345 PF00394 Multicopper oxidase PF550_03345 PF07731 Multicopper oxidase PF550_03360 PF00893 Small Multidrug Resistance protein PF550_03365 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain PF550_03365 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain PF550_03370 PF01960 ArgJ family PF550_03375 PF02445 Quinolinate synthetase A protein PF550_03400 PF00962 Adenosine/AMP deaminase PF550_03405 PF00107 Zinc-binding dehydrogenase PF550_03405 PF08240 Alcohol dehydrogenase GroES-like domain PF550_03410 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family PF550_03410 PF03466 LysR substrate binding domain PF550_03415 PF00441 Acyl-CoA dehydrogenase, C-terminal domain PF550_03415 PF02771 Acyl-CoA dehydrogenase, N-terminal domain PF550_03415 PF02770 Acyl-CoA dehydrogenase, middle domain PF550_03420 PF07690 Major Facilitator Superfamily PF550_03425 PF02515 CoA-transferase family III PF550_03430 PF17932 Tetracyclin repressor-like, C-terminal domain PF550_03430 PF00440 Bacterial regulatory proteins, tetR family PF550_03445 PF00890 FAD binding domain PF550_03445 PF14537 Cytochrome c3 PF550_03450 PF03466 LysR substrate binding domain PF550_03450 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family PF550_03460 PF07690 Major Facilitator Superfamily PF550_03465 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family PF550_03465 PF03466 LysR substrate binding domain PF550_03470 PF01810 LysE type translocator PF550_03475 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family PF550_03475 PF03466 LysR substrate binding domain PF550_03485 PF08267 Cobalamin-independent synthase, N-terminal domain PF550_03485 PF01717 Cobalamin-independent synthase, Catalytic domain PF550_03490 PF01613 Flavin reductase like domain PF550_03525 PF17074 Darcynin, domain of unknown function PF550_03540 PF00268 Ribonucleotide reductase, small chain PF550_03550 PF03477 ATP cone domain PF550_03550 PF02867 Ribonucleotide reductase, barrel domain PF550_03550 PF00317 Ribonucleotide reductase, all-alpha domain PF550_03560 PF00072 Response regulator receiver domain PF550_03560 PF00486 Transcriptional regulatory protein, C terminal PF550_03565 PF00512 His Kinase A (phospho-acceptor) domain PF550_03565 PF00672 HAMP domain PF550_03565 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PF550_03575 PF17158 Membrane-associated sensor, integral membrane domain PF550_03575 PF00990 Diguanylate cyclase, GGDEF domain PF550_03580 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 PF550_03585 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit PF550_03590 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit PF550_03590 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit PF550_03600 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit PF550_03600 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region PF550_03600 PF10531 SLBB domain PF550_03605 PF04879 Molybdopterin oxidoreductase Fe4S4 domain PF550_03605 PF00384 Molybdopterin oxidoreductase PF550_03605 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region PF550_03610 PF00146 NADH dehydrogenase PF550_03615 PF12838 4Fe-4S dicluster domain PF550_03620 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 PF550_03625 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L PF550_03630 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus PF550_03630 PF00361 Proton-conducting membrane transporter PF550_03635 PF00361 Proton-conducting membrane transporter PF550_03640 PF00361 Proton-conducting membrane transporter PF550_03650 PF00313 'Cold-shock' DNA-binding domain PF550_03660 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family PF550_03660 PF03466 LysR substrate binding domain PF550_03665 PF00970 Oxidoreductase FAD-binding domain PF550_03665 PF00175 Oxidoreductase NAD-binding domain PF550_03680 PF05552 Conserved TM helix PF550_03695 PF00291 Pyridoxal-phosphate dependent enzyme PF550_03700 PF13533 Biotin-lipoyl like PF550_03725 PF01588 Putative tRNA binding domain PF550_03725 PF09334 tRNA synthetases class I (M) PF550_03735 PF10609 NUBPL iron-transfer P-loop NTPase PF550_03740 PF01048 Phosphorylase superfamily PF550_03755 PF00692 dUTPase PF550_03785 PF01207 Dihydrouridine synthase (Dus) PF550_03795 PF00448 SRP54-type protein, GTPase domain PF550_03795 PF02881 SRP54-type protein, helical bundle domain PF550_03795 PF02978 Signal peptide binding domain PF550_03800 PF03309 Type III pantothenate kinase PF550_03810 PF01925 Sulfite exporter TauE/SafE PF550_03820 PF06470 SMC proteins Flexible Hinge Domain PF550_03820 PF02463 RecF/RecN/SMC N terminal domain PF550_03830 PF12826 Helix-hairpin-helix motif PF550_03830 PF03119 NAD-dependent DNA ligase C4 zinc finger domain PF550_03830 PF03120 NAD-dependent DNA ligase OB-fold domain PF550_03830 PF00533 BRCA1 C Terminus (BRCT) domain PF550_03830 PF01653 NAD-dependent DNA ligase adenylation domain PF550_03835 PF00210 Ferritin-like domain PF550_03840 PF07690 Major Facilitator Superfamily PF550_03845 PF00982 Glycosyltransferase family 20 PF550_03850 PF02358 Trehalose-phosphatase PF550_03855 PF12697 Alpha/beta hydrolase family PF550_03855 PF08241 Methyltransferase domain PF550_03860 PF04055 Radical SAM superfamily PF550_03860 PF00202 Aminotransferase class-III PF550_03860 PF06968 Biotin and Thiamin Synthesis associated domain PF550_03865 PF00155 Aminotransferase class I and II PF550_03880 PF00849 RNA pseudouridylate synthase PF550_03880 PF01479 S4 domain PF550_03885 PF04079 Segregation and condensation complex subunit ScpB PF550_03890 PF02616 Segregation and condensation protein ScpA PF550_03895 PF01300 Telomere recombination PF550_03900 PF04315 Elongation factor P hydroxylase PF550_03905 PF02620 Large ribosomal RNA subunit accumulation protein YceD PF550_03910 PF01783 Ribosomal L32p protein family PF550_03915 PF00698 Acyl transferase domain PF550_03925 PF00550 Phosphopantetheine attachment site PF550_03930 PF04972 BON domain PF550_03930 PF01476 LysM domain PF550_03935 PF08543 Phosphomethylpyrimidine kinase PF550_03935 PF03070 TENA/THI-4/PQQC family PF550_03935 PF02581 Thiamine monophosphate synthase PF550_03945 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase PF550_03960 PF02261 Aspartate decarboxylase PF550_03965 PF01195 Peptidyl-tRNA hydrolase PF550_03970 PF01386 Ribosomal L25p family PF550_03975 PF14572 Phosphoribosyl synthetase-associated domain PF550_03975 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase PF550_04000 PF08544 GHMP kinases C terminal PF550_04000 PF00288 GHMP kinases N terminal domain PF550_04005 PF03550 Outer membrane lipoprotein LolB PF550_04015 PF01488 Shikimate / quinate 5-dehydrogenase PF550_04015 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain PF550_04015 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain PF550_04020 PF10410 DnaB-helicase binding domain of primase PF550_04020 PF08278 DNA primase DnaG DnaB-binding PF550_04020 PF08275 DNA primase catalytic core, N-terminal domain PF550_04020 PF01807 CHC2 zinc finger PF550_04025 PF13525 Outer membrane lipoprotein PF550_04030 PF00849 RNA pseudouridylate synthase PF550_04030 PF01479 S4 domain PF550_04035 PF02578 Multi-copper polyphenol oxidoreductase laccase PF550_04040 PF03358 NADPH-dependent FMN reductase PF550_04045 PF01668 SmpB protein PF550_04050 PF01467 Cytidylyltransferase-like PF550_04055 PF00037 4Fe-4S binding domain PF550_04075 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family PF550_04075 PF03466 LysR substrate binding domain PF550_04080 PF00180 Isocitrate/isopropylmalate dehydrogenase PF550_04085 PF02028 BCCT, betaine/carnitine/choline family transporter PF550_04090 PF07859 alpha/beta hydrolase fold PF550_04095 PF00848 Ring hydroxylating alpha subunit (catalytic domain) PF550_04095 PF00355 Rieske [2Fe-2S] domain PF550_04100 PF00171 Aldehyde dehydrogenase family PF550_04105 PF00970 Oxidoreductase FAD-binding domain PF550_04105 PF00111 2Fe-2S iron-sulfur cluster binding domain PF550_04105 PF00175 Oxidoreductase NAD-binding domain PF550_04120 PF00795 Carbon-nitrogen hydrolase PF550_04120 PF02540 NAD synthase PF550_04130 PF02678 Pirin PF550_04130 PF05726 Pirin C-terminal cupin domain PF550_04135 PF03653 Uncharacterised protein family (UPF0093) PF550_04140 PF02801 Beta-ketoacyl synthase, C-terminal domain PF550_04140 PF00109 Beta-ketoacyl synthase, N-terminal domain PF550_04150 PF00164 Ribosomal protein S12/S23 PF550_04155 PF00177 Ribosomal protein S7p/S5e PF550_04160 PF00679 Elongation factor G C-terminus PF550_04160 PF14492 Elongation Factor G, domain II PF550_04160 PF03764 Elongation factor G, domain IV PF550_04160 PF00009 Elongation factor Tu GTP binding domain PF550_04160 PF03144 Elongation factor Tu domain 2 PF550_04165 PF00009 Elongation factor Tu GTP binding domain PF550_04165 PF03143 Elongation factor Tu C-terminal domain PF550_04165 PF03144 Elongation factor Tu domain 2 PF550_04180 PF00583 Acetyltransferase (GNAT) family PF550_04185 PF04377 Arginine-tRNA-protein transferase, C terminus PF550_04185 PF04376 Arginine-tRNA-protein transferase, N terminus PF550_04190 PF03588 Leucyl/phenylalanyl-tRNA protein transferase PF550_04195 PF07992 Pyridine nucleotide-disulphide oxidoreductase PF550_04200 PF17854 FtsK alpha domain PF550_04200 PF13491 4TM region of DNA translocase FtsK/SpoIIIE PF550_04200 PF01580 FtsK/SpoIIIE family PF550_04200 PF09397 Ftsk gamma domain PF550_04205 PF01810 LysE type translocator PF550_04215 PF03776 Septum formation topological specificity factor MinE PF550_04220 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain PF550_04225 PF03775 Septum formation inhibitor MinC, C-terminal domain PF550_04235 PF01553 Acyltransferase PF550_04240 PF13488 Glycine zipper PF550_04240 PF00691 OmpA family PF550_04245 PF00580 UvrD/REP helicase N-terminal domain PF550_04245 PF13361 UvrD-like helicase C-terminal domain PF550_04250 PF00692 dUTPase PF550_04255 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain PF550_04255 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III PF550_04255 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II PF550_04255 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I PF550_04260 PF00696 Amino acid kinase family PF550_04270 PF13230 Glutamine amidotransferases class-II PF550_04275 PF01814 Hemerythrin HHE cation binding domain PF550_04285 PF03658 RnfH family Ubiquitin PF550_04290 PF04355 SmpA / OmlA family PF550_04295 PF01475 Ferric uptake regulator family PF550_04300 PF00437 Type II/IV secretion system protein PF550_04305 PF00437 Type II/IV secretion system protein PF550_04310 PF01168 Alanine racemase, N-terminal domain PF550_04320 PF00149 Calcineurin-like phosphoesterase PF550_04320 PF12320 Type 5 capsule protein repressor C-terminal domain PF550_04340 PF08338 Domain of unknown function (DUF1731) PF550_04340 PF01370 NAD dependent epimerase/dehydratase family PF550_04345 PF01266 FAD dependent oxidoreductase PF550_04350 PF00490 Delta-aminolevulinic acid dehydratase PF550_04355 PF03061 Thioesterase superfamily PF550_04360 PF13533 Biotin-lipoyl like PF550_04365 PF07690 Major Facilitator Superfamily PF550_04380 PF13356 Arm DNA-binding domain PF550_04380 PF00589 Phage integrase family PF550_04425 PF00436 Single-strand binding protein family PF550_04465 PF13005 zinc-finger binding domain of transposase IS66 PF550_04465 PF13007 Transposase C of IS166 homeodomain PF550_04465 PF13817 IS66 C-terminal element PF550_04465 PF03050 Transposase IS66 family PF550_04480 PF02384 N-6 DNA Methylase PF550_04495 PF18766 SWI2/SNF2 ATPase PF550_04495 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) PF550_04495 PF11867 Domain of unknown function (DUF3387) PF550_04500 PF12161 HsdM N-terminal domain PF550_04500 PF02384 N-6 DNA Methylase PF550_04530 PF00083 Sugar (and other) transporter PF550_04550 PF04717 Type VI secretion system, phage-baseplate injector PF550_04550 PF13296 Putative type VI secretion system Rhs element Vgr PF550_04550 PF10106 Uncharacterized protein conserved in bacteria (DUF2345) PF550_04580 PF13520 Amino acid permease PF550_04585 PF02574 Homocysteine S-methyltransferase PF550_04595 PF06039 Malate:quinone oxidoreductase (Mqo) PF550_04610 PF13007 Transposase C of IS166 homeodomain PF550_04610 PF13005 zinc-finger binding domain of transposase IS66 PF550_04610 PF13817 IS66 C-terminal element PF550_04610 PF03050 Transposase IS66 family PF550_04615 PF05199 GMC oxidoreductase PF550_04615 PF00732 GMC oxidoreductase PF550_04620 PF00171 Aldehyde dehydrogenase family PF550_04625 PF13977 BetI-type transcriptional repressor, C-terminal PF550_04625 PF00440 Bacterial regulatory proteins, tetR family PF550_04630 PF02028 BCCT, betaine/carnitine/choline family transporter PF550_04635 PF02028 BCCT, betaine/carnitine/choline family transporter PF550_04645 PF03061 Thioesterase superfamily PF550_04655 PF07683 Cobalamin synthesis protein cobW C-terminal domain PF550_04655 PF02492 CobW/HypB/UreG, nucleotide-binding domain PF550_04660 PF00375 Sodium:dicarboxylate symporter family PF550_04665 PF07152 YaeQ protein PF550_04670 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase PF550_04675 PF14883 Hypothetical glycosyl hydrolase family 13 PF550_04675 PF01522 Polysaccharide deacetylase PF550_04680 PF00535 Glycosyl transferase family 2 PF550_04690 PF00378 Enoyl-CoA hydratase/isomerase PF550_04705 PF09339 IclR helix-turn-helix domain PF550_04705 PF01614 Bacterial transcriptional regulator PF550_04710 PF00355 Rieske [2Fe-2S] domain PF550_04720 PF00355 Rieske [2Fe-2S] domain PF550_04730 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily PF550_04735 PF14759 Reductase C-terminal PF550_04735 PF07992 Pyridine nucleotide-disulphide oxidoreductase PF550_04740 PF07690 Major Facilitator Superfamily PF550_04750 PF12697 Alpha/beta hydrolase family PF550_04760 PF03447 Homoserine dehydrogenase, NAD binding domain PF550_04760 PF01958 Domain of unknown function DUF108 PF550_04765 PF00171 Aldehyde dehydrogenase family PF550_04770 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain PF550_04770 PF00205 Thiamine pyrophosphate enzyme, central domain PF550_04770 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain PF550_04780 PF07690 Major Facilitator Superfamily PF550_04785 PF01327 Polypeptide deformylase PF550_04790 PF04960 Glutaminase PF550_04795 PF12833 Helix-turn-helix domain PF550_04795 PF02311 AraC-like ligand binding domain PF550_04800 PF07690 Major Facilitator Superfamily PF550_04805 PF01263 Aldose 1-epimerase PF550_04815 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family PF550_04815 PF03466 LysR substrate binding domain PF550_04825 PF07690 Major Facilitator Superfamily PF550_04830 PF00456 Transketolase, thiamine diphosphate binding domain PF550_04835 PF02780 Transketolase, C-terminal domain PF550_04835 PF02779 Transketolase, pyrimidine binding domain PF550_04840 PF00809 Pterin binding enzyme PF550_04840 PF02574 Homocysteine S-methyltransferase PF550_04840 PF02965 Vitamin B12 dependent methionine synthase, activation domain PF550_04840 PF02310 B12 binding domain PF550_04840 PF02607 B12 binding domain PF550_04845 PF01384 Phosphate transporter family PF550_04850 PF00291 Pyridoxal-phosphate dependent enzyme PF550_04865 PF03781 Sulfatase-modifying factor enzyme 1 PF550_04870 PF00884 Sulfatase PF550_04880 PF01106 NifU-like domain PF550_04880 PF01521 Iron-sulphur cluster biosynthesis PF550_04890 PF07715 TonB-dependent Receptor Plug Domain PF550_04890 PF00593 TonB dependent receptor PF550_04900 PF00561 alpha/beta hydrolase fold PF550_04905 PF00484 Carbonic anhydrase PF550_04910 PF13472 GDSL-like Lipase/Acylhydrolase family PF550_04915 PF00005 ABC transporter PF550_04925 PF01694 Rhomboid family PF550_04930 PF00912 Transglycosylase PF550_04935 PF13089 Polyphosphate kinase N-terminal domain PF550_04935 PF13090 Polyphosphate kinase C-terminal domain 2 PF550_04935 PF17941 Polyphosphate kinase C-terminal domain 1 PF550_04935 PF02503 Polyphosphate kinase middle domain PF550_04950 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family PF550_04950 PF03466 LysR substrate binding domain PF550_04955 PF00561 alpha/beta hydrolase fold PF550_04960 PF07992 Pyridine nucleotide-disulphide oxidoreductase PF550_04960 PF18113 Rubredoxin binding C-terminal domain PF550_04965 PF00301 Rubredoxin PF550_04980 PF01336 OB-fold nucleic acid binding domain PF550_04980 PF00152 tRNA synthetases class II (D, K and N) PF550_04985 PF14052 Capsule assembly protein Wzi PF550_04995 PF01507 Phosphoadenosine phosphosulfate reductase family PF550_05000 PF00009 Elongation factor Tu GTP binding domain PF550_05015 PF03600 Citrate transporter PF550_05020 PF01595 Cyclin M transmembrane N-terminal domain PF550_05020 PF03471 Transporter associated domain PF550_05020 PF00571 CBS domain PF550_05025 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family PF550_05025 PF03466 LysR substrate binding domain PF550_05030 PF00463 Isocitrate lyase family PF550_05045 PF01774 UreD urease accessory protein PF550_05050 PF00547 Urease, gamma subunit PF550_05055 PF00699 Urease beta subunit PF550_05060 PF01979 Amidohydrolase family PF550_05060 PF00449 Urease alpha-subunit, N-terminal domain PF550_05065 PF05194 UreE urease accessory protein, C-terminal domain PF550_05065 PF02814 UreE urease accessory protein, N-terminal domain PF550_05070 PF01730 UreF PF550_05075 PF02492 CobW/HypB/UreG, nucleotide-binding domain PF550_05090 PF03717 Penicillin-binding Protein dimerisation domain PF550_05090 PF00905 Penicillin binding protein transpeptidase domain PF550_05105 PF05191 Adenylate kinase, active site lid PF550_05115 PF00730 HhH-GPD superfamily base excision DNA repair protein PF550_05115 PF00633 Helix-hairpin-helix motif PF550_05115 PF10576 Iron-sulfur binding domain of endonuclease III PF550_05120 PF04060 Putative Fe-S cluster PF550_05125 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain PF550_05125 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase PF550_05135 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase PF550_05140 PF02590 Predicted SPOUT methyltransferase PF550_05145 PF02190 ATP-dependent protease La (LON) substrate-binding domain PF550_05145 PF05362 Lon protease (S16) C-terminal proteolytic domain PF550_05145 PF00004 ATPase family associated with various cellular activities (AAA) PF550_05150 PF13018 Extended Signal Peptide of Type V secretion system PF550_05150 PF03895 YadA-like membrane anchor domain PF550_05150 PF05658 Head domain of trimeric autotransporter adhesin PF550_05150 PF05662 Coiled stalk of trimeric autotransporter adhesin PF550_05155 PF00691 OmpA family PF550_05155 PF04355 SmpA / OmlA family PF550_05160 PF01812 5-formyltetrahydrofolate cyclo-ligase family PF550_05470 PF03050 Transposase IS66 family PF550_05470 PF13817 IS66 C-terminal element PF550_05470 PF13007 Transposase C of IS166 homeodomain PF550_05470 PF13005 zinc-finger binding domain of transposase IS66 PF550_05490 PF13817 IS66 C-terminal element PF550_05490 PF13005 zinc-finger binding domain of transposase IS66 PF550_05490 PF13007 Transposase C of IS166 homeodomain PF550_05490 PF03050 Transposase IS66 family PF550_05520 PF08032 RNA 2'-O ribose methyltransferase substrate binding PF550_05520 PF00588 SpoU rRNA Methylase family PF550_05525 PF00316 Fructose-1-6-bisphosphatase, N-terminal domain PF550_05535 PF00691 OmpA family PF550_05540 PF04052 TolB amino-terminal domain PF550_05540 PF07676 WD40-like Beta Propeller Repeat PF550_05550 PF02472 Biopolymer transport protein ExbD/TolR PF550_05555 PF01618 MotA/TolQ/ExbB proton channel family PF550_05560 PF03061 Thioesterase superfamily PF550_05565 PF01546 Peptidase family M20/M25/M40 PF550_05565 PF07687 Peptidase dimerisation domain PF550_05570 PF05491 RuvB C-terminal winged helix domain PF550_05570 PF17864 RuvB AAA lid domain PF550_05570 PF05496 Holliday junction DNA helicase RuvB P-loop domain PF550_05575 PF07499 RuvA, C-terminal domain PF550_05575 PF01330 RuvA N terminal domain PF550_05580 PF01966 HD domain PF550_05585 PF02769 AIR synthase related protein, C-terminal domain PF550_05585 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain PF550_05585 PF18076 Formylglycinamide ribonucleotide amidotransferase N-terminal PF550_05590 PF07690 Major Facilitator Superfamily PF550_05600 PF01784 NIF3 (NGG1p interacting factor 3) PF550_05605 PF00378 Enoyl-CoA hydratase/isomerase PF550_05610 PF01467 Cytidylyltransferase-like PF550_05610 PF00293 NUDIX domain PF550_05620 PF00578 AhpC/TSA family PF550_05635 PF06508 Queuosine biosynthesis protein QueC PF550_05645 PF14602 Hexapeptide repeat of succinyl-transferase PF550_05645 PF00132 Bacterial transferase hexapeptide (six repeats) PF550_05645 PF14805 Tetrahydrodipicolinate N-succinyltransferase N-terminal PF550_05655 PF03466 LysR substrate binding domain PF550_05655 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family PF550_05660 PF12857 TOBE-like domain PF550_05660 PF00005 ABC transporter PF550_05665 PF00528 Binding-protein-dependent transport system inner membrane component PF550_05670 PF00528 Binding-protein-dependent transport system inner membrane component PF550_05685 PF01063 Amino-transferase class IV PF550_05690 PF02618 YceG-like family PF550_05695 PF02223 Thymidylate kinase PF550_05705 PF00890 FAD binding domain PF550_05705 PF02910 Fumarate reductase flavoprotein C-term PF550_05710 PF13180 PDZ domain PF550_05720 PF00679 Elongation factor G C-terminus PF550_05720 PF06421 GTP-binding protein LepA C-terminus PF550_05720 PF03144 Elongation factor Tu domain 2 PF550_05720 PF00009 Elongation factor Tu GTP binding domain PF550_05725 PF10502 Signal peptidase, peptidase S26 PF550_05735 PF14622 Ribonuclease-III-like PF550_05735 PF00035 Double-stranded RNA binding motif PF550_05740 PF01926 50S ribosome-binding GTPase PF550_05740 PF07650 KH domain PF550_05750 PF11967 Recombination protein O N terminal PF550_05750 PF02565 Recombination protein O C terminal PF550_05755 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ PF550_05760 PF06175 tRNA-(MS[2]IO[6]A)-hydroxylase (MiaE) PF550_05765 PF00106 short chain dehydrogenase PF550_05795 PF00012 Hsp70 protein PF550_05805 PF00155 Aminotransferase class I and II PF550_05815 PF00990 Diguanylate cyclase, GGDEF domain PF550_05815 PF17151 Periplasmic sensor domain PF550_05825 PF00271 Helicase conserved C-terminal domain PF550_05825 PF02151 UvrB/uvrC motif PF550_05825 PF04851 Type III restriction enzyme, res subunit PF550_05825 PF12344 Ultra-violet resistance protein B PF550_05825 PF17757 UvrB interaction domain PF550_05835 PF00892 EamA-like transporter family PF550_05840 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain PF550_05840 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain PF550_05855 PF01926 50S ribosome-binding GTPase PF550_05855 PF01018 GTP1/OBG PF550_05860 PF00696 Amino acid kinase family PF550_05860 PF01472 PUA domain PF550_05870 PF07759 Protein of unknown function (DUF1615) PF550_05875 PF01207 Dihydrouridine synthase (Dus) PF550_05880 PF03060 Nitronate monooxygenase PF550_05895 PF02350 UDP-N-acetylglucosamine 2-epimerase PF550_05925 PF00875 DNA photolyase PF550_05925 PF03441 FAD binding domain of DNA photolyase PF550_05930 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase PF550_05935 PF07992 Pyridine nucleotide-disulphide oxidoreductase PF550_05940 PF00768 D-alanyl-D-alanine carboxypeptidase PF550_05940 PF07943 Penicillin-binding protein 5, C-terminal domain PF550_05950 PF03971 Monomeric isocitrate dehydrogenase PF550_05955 PF00849 RNA pseudouridylate synthase PF550_05960 PF00180 Isocitrate/isopropylmalate dehydrogenase PF550_05980 PF06779 Uncharacterised MFS-type transporter YbfB PF550_05985 PF03466 LysR substrate binding domain PF550_05985 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family PF550_05990 PF00375 Sodium:dicarboxylate symporter family PF550_05995 PF02567 Phenazine biosynthesis-like protein PF550_06000 PF00675 Insulinase (Peptidase family M16) PF550_06000 PF05193 Peptidase M16 inactive domain PF550_06025 PF13007 Transposase C of IS166 homeodomain PF550_06025 PF03050 Transposase IS66 family PF550_06025 PF13817 IS66 C-terminal element PF550_06025 PF13005 zinc-finger binding domain of transposase IS66 PF550_06045 PF02581 Thiamine monophosphate synthase PF550_06050 PF00202 Aminotransferase class-III PF550_06060 PF00849 RNA pseudouridylate synthase PF550_06065 PF00271 Helicase conserved C-terminal domain PF550_06065 PF12137 RNA polymerase recycling family C-terminal PF550_06065 PF18339 RapA N-terminal Tudor like domain 1 PF550_06065 PF00176 SNF2 family N-terminal domain PF550_06065 PF18337 RapA N-terminal Tudor like domain PF550_06075 PF00440 Bacterial regulatory proteins, tetR family PF550_06080 PF00970 Oxidoreductase FAD-binding domain PF550_06080 PF00111 2Fe-2S iron-sulfur cluster binding domain PF550_06080 PF00175 Oxidoreductase NAD-binding domain PF550_06085 PF00487 Fatty acid desaturase PF550_06090 PF02525 Flavodoxin-like fold PF550_06105 PF00202 Aminotransferase class-III PF550_06110 PF00282 Pyridoxal-dependent decarboxylase conserved domain PF550_06115 PF00171 Aldehyde dehydrogenase family PF550_06120 PF01037 Lrp/AsnC ligand binding domain PF550_06125 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain PF550_06125 PF00205 Thiamine pyrophosphate enzyme, central domain PF550_06125 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain PF550_06130 PF00324 Amino acid permease PF550_06135 PF12849 PBP superfamily domain PF550_06140 PF00528 Binding-protein-dependent transport system inner membrane component PF550_06145 PF00528 Binding-protein-dependent transport system inner membrane component PF550_06150 PF00005 ABC transporter PF550_06155 PF01343 Peptidase family S49 PF550_06155 PF08496 Peptidase family S49 N-terminal PF550_06170 PF08328 Adenylosuccinate lyase C-terminal PF550_06170 PF00206 Lyase PF550_06175 PF04356 Protein of unknown function (DUF489) PF550_06185 PF13344 Haloacid dehalogenase-like hydrolase PF550_06185 PF00293 NUDIX domain PF550_06190 PF00132 Bacterial transferase hexapeptide (six repeats) PF550_06195 PF07943 Penicillin-binding protein 5, C-terminal domain PF550_06195 PF00768 D-alanyl-D-alanine carboxypeptidase PF550_06210 PF01975 Survival protein SurE PF550_06215 PF01551 Peptidase family M23 PF550_06215 PF01476 LysM domain PF550_06220 PF03466 LysR substrate binding domain PF550_06220 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family PF550_06225 PF13654 AAA domain PF550_06225 PF05362 Lon protease (S16) C-terminal proteolytic domain PF550_06230 PF07690 Major Facilitator Superfamily PF550_06235 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily PF550_06240 PF13593 SBF-like CPA transporter family (DUF4137) PF550_06245 PF01197 Ribosomal protein L31 PF550_06250 PF12792 CSS motif domain associated with EAL PF550_06250 PF00563 EAL domain PF550_06260 PF04055 Radical SAM superfamily PF550_06265 PF09285 Elongation factor P, C-terminal PF550_06265 PF08207 Elongation factor P (EF-P) KOW-like domain PF550_06265 PF01132 Elongation factor P (EF-P) OB domain PF550_06270 PF13722 5TM C-terminal transporter carbon starvation CstA PF550_06270 PF02554 Carbon starvation protein CstA PF550_06275 PF04328 Selenoprotein, putative PF550_06325 PF00857 Isochorismatase family PF550_06330 PF03466 LysR substrate binding domain PF550_06330 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family PF550_06340 PF00743 Flavin-binding monooxygenase-like PF550_06345 PF00561 alpha/beta hydrolase fold PF550_06355 PF01370 NAD dependent epimerase/dehydratase family PF550_06360 PF12833 Helix-turn-helix domain PF550_06360 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term PF550_06365 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family PF550_06365 PF03466 LysR substrate binding domain PF550_06370 PF00724 NADH:flavin oxidoreductase / NADH oxidase family PF550_06375 PF00557 Metallopeptidase family M24 PF550_06380 PF00083 Sugar (and other) transporter PF550_06385 PF02028 BCCT, betaine/carnitine/choline family transporter PF550_06390 PF00355 Rieske [2Fe-2S] domain PF550_06390 PF00848 Ring hydroxylating alpha subunit (catalytic domain) PF550_06395 PF00171 Aldehyde dehydrogenase family PF550_06405 PF07992 Pyridine nucleotide-disulphide oxidoreductase PF550_06405 PF18113 Rubredoxin binding C-terminal domain PF550_06410 PF05430 S-adenosyl-L-methionine-dependent methyltransferase PF550_06410 PF01266 FAD dependent oxidoreductase PF550_06430 PF00892 EamA-like transporter family PF550_06440 PF02604 Antitoxin Phd_YefM, type II toxin-antitoxin system PF550_06445 PF00083 Sugar (and other) transporter PF550_06450 PF13378 Enolase C-terminal domain-like PF550_06450 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain PF550_06470 PF13007 Transposase C of IS166 homeodomain PF550_06470 PF13817 IS66 C-terminal element PF550_06470 PF03050 Transposase IS66 family PF550_06470 PF13005 zinc-finger binding domain of transposase IS66 PF550_06480 PF00440 Bacterial regulatory proteins, tetR family PF550_06500 PF02678 Pirin PF550_06500 PF17954 Quercetinase C-terminal cupin domain PF550_06505 PF00291 Pyridoxal-phosphate dependent enzyme PF550_06510 PF13309 HTH domain PF550_06510 PF08348 YheO-like PAS domain PF550_06520 PF00668 Condensation domain PF550_06520 PF13193 AMP-binding enzyme C-terminal domain PF550_06520 PF00550 Phosphopantetheine attachment site PF550_06520 PF00501 AMP-binding enzyme PF550_06525 PF00975 Thioesterase domain PF550_06525 PF13193 AMP-binding enzyme C-terminal domain PF550_06525 PF00668 Condensation domain PF550_06525 PF00501 AMP-binding enzyme PF550_06525 PF00550 Phosphopantetheine attachment site PF550_06530 PF01032 FecCD transport family PF550_06535 PF01032 FecCD transport family PF550_06540 PF00005 ABC transporter PF550_06545 PF01497 Periplasmic binding protein PF550_06550 PF00593 TonB dependent receptor PF550_06550 PF07715 TonB-dependent Receptor Plug Domain PF550_06555 PF13434 L-lysine 6-monooxygenase (NADPH-requiring) PF550_06560 PF00501 AMP-binding enzyme PF550_06560 PF00550 Phosphopantetheine attachment site PF550_06560 PF00668 Condensation domain PF550_06565 PF00501 AMP-binding enzyme PF550_06565 PF13193 AMP-binding enzyme C-terminal domain PF550_06570 PF00857 Isochorismatase family PF550_06570 PF00550 Phosphopantetheine attachment site PF550_06575 PF00282 Pyridoxal-dependent decarboxylase conserved domain PF550_06580 PF00664 ABC transporter transmembrane region PF550_06580 PF00005 ABC transporter PF550_06585 PF00005 ABC transporter PF550_06590 PF00975 Thioesterase domain PF550_06595 PF17837 4'-phosphopantetheinyl transferase N-terminal domain PF550_06595 PF01648 4'-phosphopantetheinyl transferase superfamily PF550_06600 PF00425 chorismate binding enzyme PF550_06610 PF01208 Uroporphyrinogen decarboxylase (URO-D) PF550_06615 PF05675 Protein of unknown function (DUF817) PF550_06640 PF13005 zinc-finger binding domain of transposase IS66 PF550_06640 PF13817 IS66 C-terminal element PF550_06640 PF03050 Transposase IS66 family PF550_06640 PF13007 Transposase C of IS166 homeodomain PF550_06650 PF00144 Beta-lactamase PF550_06660 PF01227 GTP cyclohydrolase I PF550_06665 PF01799 [2Fe-2S] binding domain PF550_06665 PF00111 2Fe-2S iron-sulfur cluster binding domain PF550_06670 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase PF550_06670 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain PF550_06685 PF00218 Indole-3-glycerol phosphate synthase PF550_06690 PF02885 Glycosyl transferase family, helical bundle domain PF550_06690 PF00591 Glycosyl transferase family, a/b domain PF550_06695 PF07715 TonB-dependent Receptor Plug Domain PF550_06695 PF00593 TonB dependent receptor PF550_06700 PF11838 ERAP1-like C-terminal domain PF550_06700 PF01433 Peptidase family M1 domain PF550_06705 PF00117 Glutamine amidotransferase class-I PF550_06860 PF02498 BRO family, N-terminal domain PF550_06860 PF10548 P22AR C-terminal domain PF550_07035 PF10145 Phage-related minor tail protein PF550_07035 PF01464 Transglycosylase SLT domain PF550_07035 PF01551 Peptidase family M23 PF550_07090 PF08019 Phosphoethanolamine transferase EptA/EptB PF550_07090 PF00884 Sulfatase PF550_07125 PF05195 Aminopeptidase P, N-terminal domain PF550_07125 PF00557 Metallopeptidase family M24 PF550_07130 PF01494 FAD binding domain PF550_07135 PF01494 FAD binding domain PF550_07145 PF13411 MerR HTH family regulatory protein PF550_07155 PF01810 LysE type translocator PF550_07160 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family PF550_07160 PF03466 LysR substrate binding domain PF550_07170 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases PF550_07175 PF02021 Uncharacterised protein family UPF0102 PF550_07180 PF04972 BON domain PF550_07190 PF00293 NUDIX domain PF550_07190 PF09297 NADH pyrophosphatase zinc ribbon domain PF550_07200 PF00929 Exonuclease PF550_07205 PF01476 LysM domain PF550_07205 PF01476 LysM domain PF550_07205 PF01464 Transglycosylase SLT domain PF550_07205 PF01464 Transglycosylase SLT domain PF550_07210 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle PF550_07215 PF00528 Binding-protein-dependent transport system inner membrane component PF550_07220 PF12911 N-terminal TM domain of oligopeptide transport permease C PF550_07220 PF00528 Binding-protein-dependent transport system inner membrane component PF550_07225 PF08352 Oligopeptide/dipeptide transporter, C-terminal region PF550_07225 PF00005 ABC transporter PF550_07230 PF07992 Pyridine nucleotide-disulphide oxidoreductase PF550_07230 PF00724 NADH:flavin oxidoreductase / NADH oxidase family PF550_07235 PF00593 TonB dependent receptor PF550_07235 PF07715 TonB-dependent Receptor Plug Domain PF550_07245 PF00929 Exonuclease PF550_07250 PF01979 Amidohydrolase family PF550_07270 PF00764 Arginosuccinate synthase PF550_07275 PF07992 Pyridine nucleotide-disulphide oxidoreductase PF550_07275 PF00724 NADH:flavin oxidoreductase / NADH oxidase family PF550_07290 PF05987 Bacterial protein of unknown function (DUF898) PF550_07295 PF03180 NLPA lipoprotein PF550_07315 PF03783 Curli production assembly/transport component CsgG PF550_07325 PF05643 Putative bacterial lipoprotein (DUF799) PF550_07335 PF00324 Amino acid permease PF550_07340 PF01266 FAD dependent oxidoreductase PF550_07345 PF00324 Amino acid permease PF550_07355 PF07729 FCD domain PF550_07355 PF00392 Bacterial regulatory proteins, gntR family PF550_07365 PF00171 Aldehyde dehydrogenase family PF550_07375 PF00202 Aminotransferase class-III PF550_07380 PF04958 Arginine N-succinyltransferase beta subunit PF550_07385 PF00324 Amino acid permease PF550_07390 PF00171 Aldehyde dehydrogenase family PF550_07395 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term PF550_07395 PF12833 Helix-turn-helix domain PF550_07400 PF00892 EamA-like transporter family PF550_07405 PF04295 D-galactarate dehydratase / Altronate hydrolase, C terminus PF550_07405 PF08666 SAF domain PF550_07410 PF07690 Major Facilitator Superfamily PF550_07415 PF13378 Enolase C-terminal domain-like PF550_07420 PF00701 Dihydrodipicolinate synthetase family PF550_07425 PF00171 Aldehyde dehydrogenase family PF550_07430 PF07729 FCD domain PF550_07430 PF00392 Bacterial regulatory proteins, gntR family PF550_07435 PF07519 Tannase and feruloyl esterase PF550_07450 PF03573 outer membrane porin, OprD family PF550_07455 PF00441 Acyl-CoA dehydrogenase, C-terminal domain PF550_07455 PF02770 Acyl-CoA dehydrogenase, middle domain PF550_07455 PF02771 Acyl-CoA dehydrogenase, N-terminal domain PF550_07465 PF00171 Aldehyde dehydrogenase family PF550_07470 PF00378 Enoyl-CoA hydratase/isomerase PF550_07475 PF07690 Major Facilitator Superfamily PF550_07490 PF00175 Oxidoreductase NAD-binding domain PF550_07490 PF00111 2Fe-2S iron-sulfur cluster binding domain PF550_07495 PF00355 Rieske [2Fe-2S] domain PF550_07505 PF03781 Sulfatase-modifying factor enzyme 1 PF550_07510 PF00884 Sulfatase PF550_07515 PF07690 Major Facilitator Superfamily PF550_07520 PF03573 outer membrane porin, OprD family PF550_07525 PF05199 GMC oxidoreductase PF550_07530 PF07859 alpha/beta hydrolase fold PF550_07535 PF00106 short chain dehydrogenase PF550_07540 PF00743 Flavin-binding monooxygenase-like PF550_07545 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term PF550_07545 PF12833 Helix-turn-helix domain PF550_07550 PF04072 Leucine carboxyl methyltransferase PF550_07555 PF00743 Flavin-binding monooxygenase-like PF550_07560 PF00106 short chain dehydrogenase PF550_07570 PF00440 Bacterial regulatory proteins, tetR family PF550_07570 PF17932 Tetracyclin repressor-like, C-terminal domain PF550_07575 PF17954 Quercetinase C-terminal cupin domain PF550_07575 PF02678 Pirin PF550_07585 PF00106 short chain dehydrogenase PF550_07590 PF00743 Flavin-binding monooxygenase-like PF550_07600 PF00860 Permease family PF550_07605 PF00962 Adenosine/AMP deaminase PF550_07610 PF01292 Prokaryotic cytochrome b561 PF550_07620 PF01351 Ribonuclease HII PF550_07625 PF02599 Global regulator protein family PF550_07630 PF13840 ACT domain PF550_07630 PF01842 ACT domain PF550_07630 PF00696 Amino acid kinase family PF550_07635 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain PF550_07635 PF01411 tRNA synthetases class II (A) PF550_07635 PF02272 DHHA1 domain PF550_07640 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain PF550_07640 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain PF550_07650 PF13393 Histidyl-tRNA synthetase PF550_07655 PF00709 Adenylosuccinate synthetase PF550_07670 PF00248 Aldo/keto reductase family PF550_07675 PF13545 Crp-like helix-turn-helix domain PF550_07675 PF00027 Cyclic nucleotide-binding domain PF550_07685 PF02566 OsmC-like protein PF550_07700 PF10431 C-terminal, D2-small domain, of ClpB protein PF550_07700 PF02861 Clp amino terminal domain, pathogenicity island component PF550_07700 PF17871 AAA lid domain PF550_07700 PF07724 AAA domain (Cdc48 subfamily) PF550_07700 PF00004 ATPase family associated with various cellular activities (AAA) PF550_07715 PF01170 Putative RNA methylase family UPF0020 PF550_07715 PF10672 S-adenosylmethionine-dependent methyltransferase PF550_07715 PF02926 THUMP domain PF550_07725 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain PF550_07725 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain PF550_07730 PF01979 Amidohydrolase family PF550_07735 PF00691 OmpA family PF550_07735 PF13488 Glycine zipper PF550_07745 PF13417 Glutathione S-transferase, N-terminal domain PF550_07745 PF00043 Glutathione S-transferase, C-terminal domain PF550_07750 PF02390 Putative methyltransferase PF550_07760 PF00043 Glutathione S-transferase, C-terminal domain PF550_07760 PF02798 Glutathione S-transferase, N-terminal domain PF550_07770 PF13192 Thioredoxin domain PF550_07770 PF07992 Pyridine nucleotide-disulphide oxidoreductase PF550_07790 PF10417 C-terminal domain of 1-Cys peroxiredoxin PF550_07790 PF00578 AhpC/TSA family PF550_07795 PF00270 DEAD/DEAH box helicase PF550_07795 PF11898 Domain of unknown function (DUF3418) PF550_07795 PF04408 Helicase associated domain (HA2) PF550_07795 PF00271 Helicase conserved C-terminal domain PF550_07795 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold PF550_07800 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal PF550_07800 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III PF550_07810 PF07690 Major Facilitator Superfamily PF550_07815 PF03594 Benzoate membrane transport protein PF550_07820 PF00106 short chain dehydrogenase PF550_07825 PF00970 Oxidoreductase FAD-binding domain PF550_07825 PF00175 Oxidoreductase NAD-binding domain PF550_07825 PF00111 2Fe-2S iron-sulfur cluster binding domain PF550_07830 PF00866 Ring hydroxylating beta subunit PF550_07835 PF00355 Rieske [2Fe-2S] domain PF550_07835 PF00848 Ring hydroxylating alpha subunit (catalytic domain) PF550_07845 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family PF550_07845 PF03466 LysR substrate binding domain PF550_07855 PF00403 Heavy-metal-associated domain PF550_07860 PF09278 MerR, DNA binding PF550_07860 PF00376 MerR family regulatory protein PF550_07895 PF02601 Exonuclease VII, large subunit PF550_07895 PF13742 OB-fold nucleic acid binding domain PF550_07925 PF01810 LysE type translocator PF550_07930 PF00313 'Cold-shock' DNA-binding domain PF550_07940 PF14748 Pyrroline-5-carboxylate reductase dimerisation PF550_07940 PF03807 NADP oxidoreductase coenzyme F420-dependent PF550_07975 PF07690 Major Facilitator Superfamily PF550_07980 PF01638 HxlR-like helix-turn-helix PF550_08005 PF09190 DALR domain PF550_08005 PF01406 tRNA synthetases class I (C) catalytic domain PF550_08010 PF00571 CBS domain PF550_08010 PF01380 SIS domain PF550_08025 PF03968 OstA-like protein PF550_08030 PF00005 ABC transporter PF550_08030 PF12399 Branched-chain amino acid ATP-binding cassette transporter PF550_08035 PF02321 Outer membrane efflux protein PF550_08055 PF03050 Transposase IS66 family PF550_08055 PF13005 zinc-finger binding domain of transposase IS66 PF550_08055 PF13007 Transposase C of IS166 homeodomain PF550_08055 PF13817 IS66 C-terminal element PF550_08070 PF01205 Uncharacterized protein family UPF0029 PF550_08075 PF00132 Bacterial transferase hexapeptide (six repeats) PF550_08085 PF01596 O-methyltransferase PF550_08095 PF00037 4Fe-4S binding domain PF550_08095 PF11953 Domain of unknown function (DUF3470) PF550_08105 PF00488 MutS domain V PF550_08105 PF05190 MutS family domain IV PF550_08105 PF05192 MutS domain III PF550_08105 PF05188 MutS domain II PF550_08105 PF01624 MutS domain I PF550_08110 PF01037 Lrp/AsnC ligand binding domain PF550_08115 PF00892 EamA-like transporter family PF550_08120 PF00990 Diguanylate cyclase, GGDEF domain PF550_08120 PF03707 Bacterial signalling protein N terminal repeat PF550_08120 PF00563 EAL domain PF550_08125 PF03279 Bacterial lipid A biosynthesis acyltransferase PF550_08140 PF07690 Major Facilitator Superfamily PF550_08160 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain PF550_08160 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain PF550_08180 PF13419 Haloacid dehalogenase-like hydrolase PF550_08200 PF03466 LysR substrate binding domain PF550_08200 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family PF550_08205 PF01566 Natural resistance-associated macrophage protein PF550_08210 PF03746 LamB/YcsF family PF550_08215 PF07286 Protein of unknown function (DUF1445) PF550_08225 PF02785 Biotin carboxylase C-terminal domain PF550_08225 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain PF550_08225 PF00364 Biotin-requiring enzyme PF550_08225 PF00289 Biotin carboxylase, N-terminal domain PF550_08230 PF00654 Voltage gated chloride channel PF550_08235 PF08479 POTRA domain, ShlB-type PF550_08235 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB PF550_08235 PF17287 POTRA domain PF550_08240 PF04829 Pre-toxin domain with VENN motif PF550_08240 PF05860 haemagglutination activity domain PF550_08240 PF13332 Hemagglutinin repeat PF550_08240 PF13018 Extended Signal Peptide of Type V secretion system PF550_08265 PF00107 Zinc-binding dehydrogenase PF550_08265 PF13823 Alcohol dehydrogenase GroES-associated PF550_08265 PF08240 Alcohol dehydrogenase GroES-like domain PF550_08285 PF00289 Biotin carboxylase, N-terminal domain PF550_08285 PF02785 Biotin carboxylase C-terminal domain PF550_08285 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain PF550_08290 PF02525 Flavodoxin-like fold PF550_08295 PF01638 HxlR-like helix-turn-helix PF550_08310 PF01402 Ribbon-helix-helix protein, copG family PF550_08310 PF08753 NikR C terminal nickel binding domain PF550_08315 PF01425 Amidase PF550_08320 PF00497 Bacterial extracellular solute-binding proteins, family 3 PF550_08325 PF00005 ABC transporter PF550_08350 PF05943 Type VI secretion protein, EvpB/VC_A0108, tail sheath PF550_08380 PF06744 Type VI secretion protein IcmF C-terminal PF550_08380 PF14331 ImcF-related N-terminal domain PF550_08380 PF06761 Intracellular multiplication and human macrophage-killing PF550_08390 PF00691 OmpA family PF550_08390 PF01389 OmpA-like transmembrane domain PF550_08400 PF00004 ATPase family associated with various cellular activities (AAA) PF550_08400 PF07724 AAA domain (Cdc48 subfamily) PF550_08400 PF17871 AAA lid domain PF550_08400 PF10431 C-terminal, D2-small domain, of ClpB protein PF550_08405 PF06812 ImpA, N-terminal, type VI secretion system PF550_08410 PF05936 Bacterial Type VI secretion, VC_A0110, EvfL, ImpJ, VasE PF550_08430 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family PF550_08430 PF03466 LysR substrate binding domain PF550_08440 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region PF550_08445 PF07690 Major Facilitator Superfamily PF550_08460 PF02677 Epoxyqueuosine reductase QueH PF550_08470 PF09278 MerR, DNA binding PF550_08470 PF00376 MerR family regulatory protein PF550_08480 PF00701 Dihydrodipicolinate synthetase family PF550_08490 PF00392 Bacterial regulatory proteins, gntR family PF550_08495 PF05544 Proline racemase PF550_08500 PF01266 FAD dependent oxidoreductase PF550_08510 PF04324 BFD-like [2Fe-2S] binding domain PF550_08510 PF07992 Pyridine nucleotide-disulphide oxidoreductase PF550_08520 PF00083 Sugar (and other) transporter PF550_08525 PF00171 Aldehyde dehydrogenase family PF550_08530 PF13520 Amino acid permease PF550_08535 PF03315 Serine dehydratase beta chain PF550_08535 PF03313 Serine dehydratase alpha chain PF550_08540 PF01575 MaoC like domain PF550_08540 PF00171 Aldehyde dehydrogenase family PF550_08545 PF05138 Phenylacetic acid catabolic protein PF550_08550 PF06243 Phenylacetic acid degradation B PF550_08555 PF05138 Phenylacetic acid catabolic protein PF550_08560 PF01883 Iron-sulfur cluster assembly protein PF550_08565 PF00175 Oxidoreductase NAD-binding domain PF550_08565 PF00111 2Fe-2S iron-sulfur cluster binding domain PF550_08565 PF00970 Oxidoreductase FAD-binding domain PF550_08570 PF00378 Enoyl-CoA hydratase/isomerase PF550_08575 PF00378 Enoyl-CoA hydratase/isomerase PF550_08580 PF18321 3-hydroxybutyryl-CoA dehydrogenase reduced Rossmann-fold domain PF550_08580 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain PF550_08580 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain PF550_08585 PF02803 Thiolase, C-terminal domain PF550_08585 PF00108 Thiolase, N-terminal domain PF550_08590 PF00501 AMP-binding enzyme PF550_08590 PF14535 AMP-binding enzyme C-terminal domain PF550_08595 PF08223 PaaX-like protein C-terminal domain PF550_08595 PF07848 PaaX-like protein PF550_08600 PF00132 Bacterial transferase hexapeptide (six repeats) PF550_08605 PF03061 Thioesterase superfamily PF550_08610 PF13086 AAA domain PF550_08610 PF13087 AAA domain PF550_08610 PF13195 Protein of unknown function (DUF4011) PF550_08610 PF13086 AAA domain PF550_08610 PF13087 AAA domain PF550_08610 PF13195 Protein of unknown function (DUF4011) PF550_08635 PF00199 Catalase PF550_08640 PF01292 Prokaryotic cytochrome b561 PF550_08660 PF12697 Alpha/beta hydrolase family PF550_08665 PF01613 Flavin reductase like domain PF550_08670 PF00296 Luciferase-like monooxygenase PF550_08675 PF00171 Aldehyde dehydrogenase family PF550_08685 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin PF550_08695 PF00171 Aldehyde dehydrogenase family PF550_08700 PF02627 Carboxymuconolactone decarboxylase family PF550_08705 PF03466 LysR substrate binding domain PF550_08705 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family PF550_08710 PF02525 Flavodoxin-like fold PF550_08715 PF09339 IclR helix-turn-helix domain PF550_08715 PF01614 Bacterial transcriptional regulator PF550_08720 PF01494 FAD binding domain PF550_08725 PF07702 UTRA domain PF550_08725 PF00392 Bacterial regulatory proteins, gntR family PF550_08735 PF00005 ABC transporter PF550_08735 PF08402 TOBE domain PF550_08740 PF00528 Binding-protein-dependent transport system inner membrane component PF550_08745 PF01266 FAD dependent oxidoreductase PF550_08750 PF00266 Aminotransferase class-V PF550_08755 PF13419 Haloacid dehalogenase-like hydrolase PF550_08760 PF07690 Major Facilitator Superfamily PF550_08765 PF00441 Acyl-CoA dehydrogenase, C-terminal domain PF550_08765 PF02770 Acyl-CoA dehydrogenase, middle domain PF550_08765 PF02771 Acyl-CoA dehydrogenase, N-terminal domain PF550_08770 PF02515 CoA-transferase family III PF550_08775 PF09339 IclR helix-turn-helix domain PF550_08780 PF00378 Enoyl-CoA hydratase/isomerase PF550_08785 PF03060 Nitronate monooxygenase PF550_08790 PF07690 Major Facilitator Superfamily PF550_08795 PF09339 IclR helix-turn-helix domain PF550_08800 PF02803 Thiolase, C-terminal domain PF550_08800 PF00108 Thiolase, N-terminal domain PF550_08805 PF18321 3-hydroxybutyryl-CoA dehydrogenase reduced Rossmann-fold domain PF550_08805 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain PF550_08805 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain PF550_08815 PF00378 Enoyl-CoA hydratase/isomerase PF550_08820 PF02771 Acyl-CoA dehydrogenase, N-terminal domain PF550_08820 PF02770 Acyl-CoA dehydrogenase, middle domain PF550_08820 PF00441 Acyl-CoA dehydrogenase, C-terminal domain PF550_08825 PF07690 Major Facilitator Superfamily PF550_08830 PF01144 Coenzyme A transferase PF550_08835 PF01144 Coenzyme A transferase PF550_08845 PF07690 Major Facilitator Superfamily PF550_08855 PF02770 Acyl-CoA dehydrogenase, middle domain PF550_08855 PF02771 Acyl-CoA dehydrogenase, N-terminal domain PF550_08855 PF12806 Acetyl-CoA dehydrogenase C-terminal like PF550_08855 PF00441 Acyl-CoA dehydrogenase, C-terminal domain PF550_08870 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family PF550_08870 PF03466 LysR substrate binding domain PF550_08875 PF00682 HMGL-like PF550_08880 PF18140 Propionyl-coenzyme A carboxylase BT domain PF550_08880 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain PF550_08880 PF00364 Biotin-requiring enzyme PF550_08880 PF00289 Biotin carboxylase, N-terminal domain PF550_08880 PF02785 Biotin carboxylase C-terminal domain PF550_08885 PF00378 Enoyl-CoA hydratase/isomerase PF550_08890 PF01039 Carboxyl transferase domain PF550_08895 PF00441 Acyl-CoA dehydrogenase, C-terminal domain PF550_08895 PF02770 Acyl-CoA dehydrogenase, middle domain PF550_08895 PF02771 Acyl-CoA dehydrogenase, N-terminal domain PF550_08900 PF00440 Bacterial regulatory proteins, tetR family PF550_08905 PF00501 AMP-binding enzyme PF550_08905 PF13193 AMP-binding enzyme C-terminal domain PF550_08925 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family PF550_08925 PF03466 LysR substrate binding domain PF550_08960 PF00994 Probable molybdopterin binding domain PF550_08960 PF18146 Damage-inducible protein CinA KH domain PF550_08960 PF02464 Competence-damaged protein PF550_08970 PF00199 Catalase PF550_08970 PF18011 C-terminal domain found in long catalases PF550_08970 PF06628 Catalase-related immune-responsive PF550_08995 PF00717 Peptidase S24-like PF550_09005 PF01037 Lrp/AsnC ligand binding domain PF550_09005 PF13404 AsnC-type helix-turn-helix domain PF550_09015 PF00512 His Kinase A (phospho-acceptor) domain PF550_09015 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PF550_09015 PF09308 LuxQ, periplasmic PF550_09015 PF00072 Response regulator receiver domain PF550_09020 PF00072 Response regulator receiver domain PF550_09035 PF00528 Binding-protein-dependent transport system inner membrane component PF550_09040 PF00528 Binding-protein-dependent transport system inner membrane component PF550_09045 PF00005 ABC transporter PF550_09050 PF00497 Bacterial extracellular solute-binding proteins, family 3 PF550_09055 PF00497 Bacterial extracellular solute-binding proteins, family 3 PF550_09065 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family PF550_09065 PF03466 LysR substrate binding domain PF550_09070 PF01810 LysE type translocator PF550_09075 PF00266 Aminotransferase class-V PF550_09085 PF00132 Bacterial transferase hexapeptide (six repeats) PF550_09090 PF00581 Rhodanese-like domain PF550_09100 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family PF550_09100 PF03466 LysR substrate binding domain PF550_09105 PF02798 Glutathione S-transferase, N-terminal domain PF550_09110 PF14834 Glutathione S-transferase, C-terminal domain PF550_09110 PF02798 Glutathione S-transferase, N-terminal domain PF550_09115 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family PF550_09115 PF03466 LysR substrate binding domain PF550_09120 PF03788 LrgA family PF550_09125 PF04172 LrgB-like family PF550_09130 PF00392 Bacterial regulatory proteins, gntR family PF550_09130 PF00155 Aminotransferase class I and II PF550_09145 PF07690 Major Facilitator Superfamily PF550_09155 PF03466 LysR substrate binding domain PF550_09155 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family PF550_09160 PF16957 Malonate decarboxylase, alpha subunit, transporter PF550_09165 PF01874 ATP:dephospho-CoA triphosphoribosyl transferase PF550_09170 PF06857 Malonate decarboxylase delta subunit (MdcD) PF550_09175 PF01039 Carboxyl transferase domain PF550_09185 PF10620 Phosphoribosyl-dephospho-CoA transferase MdcG PF550_09190 PF00698 Acyl transferase domain PF550_09205 PF03466 LysR substrate binding domain PF550_09205 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family PF550_09210 PF00155 Aminotransferase class I and II PF550_09210 PF00392 Bacterial regulatory proteins, gntR family PF550_09220 PF02322 Cytochrome bd terminal oxidase subunit II PF550_09225 PF01654 Cytochrome bd terminal oxidase subunit I PF550_09240 PF00296 Luciferase-like monooxygenase PF550_09245 PF00083 Sugar (and other) transporter PF550_09270 PF04069 Substrate binding domain of ABC-type glycine betaine transport system PF550_09275 PF00005 ABC transporter PF550_09280 PF00528 Binding-protein-dependent transport system inner membrane component PF550_09285 PF02668 Taurine catabolism dioxygenase TauD, TfdA family PF550_09290 PF01177 Asp/Glu/Hydantoin racemase PF550_09295 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin PF550_09305 PF03466 LysR substrate binding domain PF550_09305 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family PF550_09315 PF13382 Adenine deaminase C-terminal domain PF550_09315 PF01979 Amidohydrolase family PF550_09325 PF03960 ArsC family PF550_09330 PF01022 Bacterial regulatory protein, arsR family PF550_09335 PF01758 Sodium Bile acid symporter family PF550_09340 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family PF550_09340 PF03466 LysR substrate binding domain PF550_09355 PF13192 Thioredoxin domain PF550_09355 PF07992 Pyridine nucleotide-disulphide oxidoreductase PF550_09370 PF00132 Bacterial transferase hexapeptide (six repeats) PF550_09375 PF00588 SpoU rRNA Methylase family PF550_09380 PF14579 Helix-hairpin-helix motif PF550_09380 PF17657 Bacterial DNA polymerase III alpha subunit finger domain PF550_09380 PF01336 OB-fold nucleic acid binding domain PF550_09380 PF02811 PHP domain PF550_09380 PF07733 Bacterial DNA polymerase III alpha NTPase domain PF550_09385 PF17763 Glutaminase/Asparaginase C-terminal domain PF550_09385 PF00710 Asparaginase, N-terminal PF550_09390 PF13737 Transposase DDE domain PF550_09395 PF00375 Sodium:dicarboxylate symporter family PF550_09400 PF00155 Aminotransferase class I and II PF550_09405 PF01641 SelR domain PF550_09410 PF00255 Glutathione peroxidase PF550_09415 PF12833 Helix-turn-helix domain PF550_09415 PF12852 Cupin PF550_09435 PF13005 zinc-finger binding domain of transposase IS66 PF550_09435 PF03050 Transposase IS66 family PF550_09435 PF13817 IS66 C-terminal element PF550_09435 PF13007 Transposase C of IS166 homeodomain PF550_09445 PF00155 Aminotransferase class I and II PF550_09450 PF08335 GlnD PII-uridylyltransferase PF550_09450 PF01966 HD domain PF550_09450 PF01909 Nucleotidyltransferase domain PF550_09455 PF02222 ATP-grasp domain PF550_09465 PF05437 Branched-chain amino acid transport protein (AzlD) PF550_09470 PF03591 AzlC protein PF550_09495 PF01926 50S ribosome-binding GTPase PF550_09495 PF06071 Protein of unknown function (DUF933) PF550_09500 PF00528 Binding-protein-dependent transport system inner membrane component PF550_09505 PF00005 ABC transporter PF550_09505 PF09383 NIL domain PF550_09510 PF03180 NLPA lipoprotein PF550_09515 PF03180 NLPA lipoprotein PF550_09520 PF00296 Luciferase-like monooxygenase PF550_09530 PF02771 Acyl-CoA dehydrogenase, N-terminal domain PF550_09530 PF08028 Acyl-CoA dehydrogenase, C-terminal domain PF550_09545 PF00528 Binding-protein-dependent transport system inner membrane component PF550_09550 PF00528 Binding-protein-dependent transport system inner membrane component PF550_09555 PF00005 ABC transporter PF550_09565 PF01037 Lrp/AsnC ligand binding domain PF550_09570 PF01709 Transcriptional regulator PF550_09580 PF00440 Bacterial regulatory proteins, tetR family PF550_09600 PF03466 LysR substrate binding domain PF550_09600 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family PF550_09610 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin PF550_09625 PF13817 IS66 C-terminal element PF550_09625 PF03050 Transposase IS66 family PF550_09625 PF13005 zinc-finger binding domain of transposase IS66 PF550_09625 PF13007 Transposase C of IS166 homeodomain PF550_09660 PF13954 PapC N-terminal domain PF550_09660 PF13953 PapC C-terminal domain PF550_09660 PF00577 Outer membrane usher protein PF550_09665 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain PF550_09665 PF02753 Pili assembly chaperone PapD, C-terminal domain PF550_09670 PF16970 Type-1 fimbrial protein, A PF550_09685 PF06968 Biotin and Thiamin Synthesis associated domain PF550_09685 PF04055 Radical SAM superfamily PF550_09690 PF08331 Domain of unknown function (DUF1730) PF550_09695 PF01256 Carbohydrate kinase PF550_09695 PF03853 YjeF-related protein N-terminus PF550_09700 PF02075 Crossover junction endodeoxyribonuclease RuvC PF550_09715 PF00905 Penicillin binding protein transpeptidase domain PF550_09735 PF13817 IS66 C-terminal element PF550_09735 PF13005 zinc-finger binding domain of transposase IS66 PF550_09735 PF03050 Transposase IS66 family PF550_09735 PF13007 Transposase C of IS166 homeodomain PF550_09760 PF02772 S-adenosylmethionine synthetase, central domain PF550_09760 PF02773 S-adenosylmethionine synthetase, C-terminal domain PF550_09760 PF00438 S-adenosylmethionine synthetase, N-terminal domain PF550_09765 PF02780 Transketolase, C-terminal domain PF550_09765 PF00456 Transketolase, thiamine diphosphate binding domain PF550_09765 PF02779 Transketolase, pyrimidine binding domain PF550_09775 PF04264 YceI-like domain PF550_09785 PF09992 Phosphodiester glycosidase PF550_09795 PF05958 tRNA (Uracil-5-)-methyltransferase PF550_09800 PF04229 GrpB protein PF550_09805 PF00171 Aldehyde dehydrogenase family PF550_09805 PF01619 Proline dehydrogenase PF550_09805 PF14850 DNA-binding domain of Proline dehydrogenase PF550_09805 PF18327 Proline utilization A proline dehydrogenase N-terminal domain PF550_09810 PF01037 Lrp/AsnC ligand binding domain PF550_09815 PF00474 Sodium:solute symporter family PF550_09820 PF02146 Sir2 family PF550_09825 PF01597 Glycine cleavage H-protein PF550_09830 PF12833 Helix-turn-helix domain PF550_09830 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term PF550_09840 PF00664 ABC transporter transmembrane region PF550_09840 PF00005 ABC transporter PF550_09845 PF09831 Uncharacterized protein conserved in bacteria (DUF2058) PF550_09850 PF06912 Protein of unknown function (DUF1275) PF550_09855 PF00375 Sodium:dicarboxylate symporter family PF550_09870 PF08007 Cupin superfamily protein PF550_09875 PF02545 Maf-like protein PF550_09885 PF00162 Phosphoglycerate kinase PF550_09895 PF01116 Fructose-bisphosphate aldolase class-II PF550_09900 PF09312 SurA N-terminal domain PF550_09900 PF00639 PPIC-type PPIASE domain PF550_09905 PF03968 OstA-like protein PF550_09905 PF04453 LPS transport system D PF550_09910 PF01636 Phosphotransferase enzyme family PF550_09915 PF00483 Nucleotidyl transferase PF550_09920 PF02527 rRNA small subunit methyltransferase G PF550_09925 PF13614 AAA domain PF550_09930 PF17762 HTH domain found in ParB protein PF550_09930 PF02195 ParB-like nuclease domain PF550_09935 PF01618 MotA/TolQ/ExbB proton channel family PF550_09945 PF00664 ABC transporter transmembrane region PF550_09945 PF00005 ABC transporter PF550_09950 PF02606 Tetraacyldisaccharide-1-P 4'-kinase PF550_09955 PF02348 Cytidylyltransferase PF550_09960 PF09115 DNA polymerase III, delta subunit, C terminal PF550_09970 PF01026 TatD related DNase PF550_09985 PF07963 Prokaryotic N-terminal methylation motif PF550_09985 PF02501 Type II secretion system (T2SS), protein I PF550_09990 PF07963 Prokaryotic N-terminal methylation motif PF550_09990 PF11612 Type II secretion system (T2SS), protein J PF550_09995 PF03934 Type II secretion system (T2SS), protein K PF550_10005 PF03167 Uracil DNA glycosylase superfamily PF550_10015 PF14437 MafB19-like deaminase PF550_10025 PF02224 Cytidylate kinase PF550_10030 PF00575 S1 RNA binding domain PF550_10035 PF00216 Bacterial DNA-binding protein PF550_10045 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family PF550_10055 PF00743 Flavin-binding monooxygenase-like PF550_10065 PF03969 AFG1-like ATPase PF550_10070 PF01274 Malate synthase PF550_10080 PF02472 Biopolymer transport protein ExbD/TolR PF550_10085 PF02472 Biopolymer transport protein ExbD/TolR PF550_10090 PF01618 MotA/TolQ/ExbB proton channel family PF550_10120 PF01432 Peptidase family M3 PF550_10125 PF00528 Binding-protein-dependent transport system inner membrane component PF550_10130 PF00528 Binding-protein-dependent transport system inner membrane component PF550_10135 PF00005 ABC transporter PF550_10135 PF08352 Oligopeptide/dipeptide transporter, C-terminal region PF550_10150 PF00459 Inositol monophosphatase family PF550_10160 PF01649 Ribosomal protein S20 PF550_10165 PF13460 NAD(P)H-binding PF550_10170 PF03737 Aldolase/RraA PF550_10190 PF00270 DEAD/DEAH box helicase PF550_10190 PF00271 Helicase conserved C-terminal domain PF550_10190 PF03461 TRCF domain PF550_10190 PF17757 UvrB interaction domain PF550_10190 PF02559 CarD-like/TRCF domain PF550_10200 PF00211 Adenylate and Guanylate cyclase catalytic domain PF550_10205 PF13817 IS66 C-terminal element PF550_10205 PF03050 Transposase IS66 family PF550_10205 PF13005 zinc-finger binding domain of transposase IS66 PF550_10205 PF13007 Transposase C of IS166 homeodomain PF550_10220 PF00111 2Fe-2S iron-sulfur cluster binding domain PF550_10225 PF00012 Hsp70 protein PF550_10230 PF00226 DnaJ domain PF550_10230 PF07743 HSCB C-terminal oligomerisation domain PF550_10235 PF01521 Iron-sulphur cluster biosynthesis PF550_10240 PF01592 NifU-like N terminal domain PF550_10245 PF00266 Aminotransferase class-V PF550_10250 PF02082 Transcriptional regulator PF550_10265 PF00216 Bacterial DNA-binding protein PF550_10270 PF00639 PPIC-type PPIASE domain PF550_10270 PF09312 SurA N-terminal domain PF550_10275 PF12833 Helix-turn-helix domain PF550_10275 PF12852 Cupin PF550_10280 PF00487 Fatty acid desaturase PF550_10285 PF02770 Acyl-CoA dehydrogenase, middle domain PF550_10285 PF00441 Acyl-CoA dehydrogenase, C-terminal domain PF550_10285 PF02771 Acyl-CoA dehydrogenase, N-terminal domain PF550_10290 PF00441 Acyl-CoA dehydrogenase, C-terminal domain PF550_10290 PF02771 Acyl-CoA dehydrogenase, N-terminal domain PF550_10290 PF02770 Acyl-CoA dehydrogenase, middle domain PF550_10295 PF03109 ABC1 family PF550_10305 PF04073 Aminoacyl-tRNA editing domain PF550_10310 PF04183 IucA / IucC family PF550_10310 PF06276 Ferric iron reductase FhuF-like transporter PF550_10315 PF13434 L-lysine 6-monooxygenase (NADPH-requiring) PF550_10320 PF07690 Major Facilitator Superfamily PF550_10325 PF04183 IucA / IucC family PF550_10325 PF06276 Ferric iron reductase FhuF-like transporter PF550_10330 PF04183 IucA / IucC family PF550_10330 PF06276 Ferric iron reductase FhuF-like transporter PF550_10340 PF03737 Aldolase/RraA PF550_10345 PF07715 TonB-dependent Receptor Plug Domain PF550_10345 PF00593 TonB dependent receptor PF550_10370 PF13419 Haloacid dehalogenase-like hydrolase PF550_10380 PF02283 Cobinamide kinase / cobinamide phosphate guanyltransferase PF550_10385 PF02277 Phosphoribosyltransferase PF550_10400 PF02654 Cobalamin-5-phosphate synthase PF550_10405 PF00793 DAHP synthetase I family PF550_10410 PF01925 Sulfite exporter TauE/SafE PF550_10430 PF07715 TonB-dependent Receptor Plug Domain PF550_10430 PF00593 TonB dependent receptor PF550_10435 PF02684 Lipid-A-disaccharide synthetase PF550_10445 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion PF550_10450 PF00005 ABC transporter PF550_10490 PF13005 zinc-finger binding domain of transposase IS66 PF550_10490 PF13007 Transposase C of IS166 homeodomain PF550_10490 PF03050 Transposase IS66 family PF550_10490 PF13817 IS66 C-terminal element PF550_10500 PF01230 HIT domain PF550_10530 PF08241 Methyltransferase domain PF550_10535 PF00561 alpha/beta hydrolase fold PF550_10540 PF01053 Cys/Met metabolism PLP-dependent enzyme PF550_10550 PF02575 YbaB/EbfC DNA-binding family PF550_10555 PF02132 RecR protein PF550_10555 PF13662 Toprim domain PF550_10560 PF01612 3'-5' exonuclease PF550_10560 PF00570 HRDC domain PF550_10580 PF05166 YcgL domain PF550_10590 PF00004 ATPase family associated with various cellular activities (AAA) PF550_10590 PF17862 AAA+ lid domain PF550_10590 PF01434 Peptidase family M41 PF550_10600 PF00291 Pyridoxal-phosphate dependent enzyme PF550_10605 PF05175 Methyltransferase small domain PF550_10610 PF01264 Chorismate synthase PF550_10625 PF13005 zinc-finger binding domain of transposase IS66 PF550_10625 PF03050 Transposase IS66 family PF550_10625 PF13817 IS66 C-terminal element PF550_10625 PF13007 Transposase C of IS166 homeodomain PF550_10630 PF00990 Diguanylate cyclase, GGDEF domain PF550_10630 PF08448 PAS fold PF550_10645 PF04055 Radical SAM superfamily PF550_10650 PF00676 Dehydrogenase E1 component PF550_10655 PF02779 Transketolase, pyrimidine binding domain PF550_10655 PF02780 Transketolase, C-terminal domain PF550_10660 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) PF550_10660 PF00364 Biotin-requiring enzyme PF550_10660 PF02817 e3 binding domain PF550_10665 PF07992 Pyridine nucleotide-disulphide oxidoreductase PF550_10665 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain PF550_10670 PF00106 short chain dehydrogenase PF550_10675 PF08240 Alcohol dehydrogenase GroES-like domain PF550_10675 PF00107 Zinc-binding dehydrogenase PF550_10680 PF01062 Bestrophin, RFP-TM, chloride channel PF550_10685 PF00072 Response regulator receiver domain PF550_10685 PF00158 Sigma-54 interaction domain PF550_10685 PF02954 Bacterial regulatory protein, Fis family PF550_10690 PF04273 Putative phosphatase (DUF442) PF550_10690 PF00753 Metallo-beta-lactamase superfamily PF550_10705 PF01925 Sulfite exporter TauE/SafE PF550_10720 PF12833 Helix-turn-helix domain PF550_10720 PF06445 GyrI-like small molecule binding domain PF550_10725 PF01638 HxlR-like helix-turn-helix PF550_10730 PF02525 Flavodoxin-like fold PF550_10735 PF02417 Chromate transporter PF550_10740 PF07702 UTRA domain PF550_10740 PF00392 Bacterial regulatory proteins, gntR family PF550_10755 PF04069 Substrate binding domain of ABC-type glycine betaine transport system PF550_10760 PF00528 Binding-protein-dependent transport system inner membrane component PF550_10765 PF00005 ABC transporter PF550_10780 PF00083 Sugar (and other) transporter PF550_10785 PF07715 TonB-dependent Receptor Plug Domain PF550_10785 PF00593 TonB dependent receptor PF550_10790 PF10415 Fumarase C C-terminus PF550_10790 PF00206 Lyase PF550_10805 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family PF550_10805 PF03466 LysR substrate binding domain PF550_10810 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family PF550_10810 PF03466 LysR substrate binding domain PF550_10815 PF02803 Thiolase, C-terminal domain PF550_10815 PF00108 Thiolase, N-terminal domain PF550_10820 PF02667 Short chain fatty acid transporter PF550_10825 PF01144 Coenzyme A transferase PF550_10830 PF01144 Coenzyme A transferase PF550_10835 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family PF550_10835 PF03466 LysR substrate binding domain PF550_10855 PF00440 Bacterial regulatory proteins, tetR family PF550_10875 PF06719 AraC-type transcriptional regulator N-terminus PF550_10875 PF12833 Helix-turn-helix domain PF550_10880 PF07690 Major Facilitator Superfamily PF550_10885 PF01738 Dienelactone hydrolase family PF550_10900 PF01613 Flavin reductase like domain PF550_10910 PF14525 AraC-binding-like domain PF550_10910 PF12833 Helix-turn-helix domain PF550_10915 PF00175 Oxidoreductase NAD-binding domain PF550_10915 PF00970 Oxidoreductase FAD-binding domain PF550_10915 PF00111 2Fe-2S iron-sulfur cluster binding domain PF550_10920 PF00866 Ring hydroxylating beta subunit PF550_10925 PF00848 Ring hydroxylating alpha subunit (catalytic domain) PF550_10925 PF00355 Rieske [2Fe-2S] domain PF550_10930 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family PF550_10930 PF03459 TOBE domain PF550_10940 PF00528 Binding-protein-dependent transport system inner membrane component PF550_10945 PF00005 ABC transporter PF550_10945 PF03459 TOBE domain PF550_10950 PF00106 short chain dehydrogenase PF550_10955 PF00857 Isochorismatase family PF550_10955 PF00550 Phosphopantetheine attachment site PF550_10965 PF00149 Calcineurin-like phosphoesterase PF550_10970 PF02503 Polyphosphate kinase middle domain PF550_10970 PF13090 Polyphosphate kinase C-terminal domain 2 PF550_10970 PF17941 Polyphosphate kinase C-terminal domain 1 PF550_10970 PF13089 Polyphosphate kinase N-terminal domain PF550_10975 PF08042 PqqA family PF550_10980 PF12706 Beta-lactamase superfamily domain PF550_10985 PF03070 TENA/THI-4/PQQC family PF550_10990 PF05402 Coenzyme PQQ synthesis protein D (PqqD) PF550_10995 PF13186 Iron-sulfur cluster-binding domain PF550_10995 PF04055 Radical SAM superfamily PF550_11000 PF01244 Membrane dipeptidase (Peptidase family M19) PF550_11035 PF13817 IS66 C-terminal element PF550_11035 PF13005 zinc-finger binding domain of transposase IS66 PF550_11035 PF03050 Transposase IS66 family PF550_11035 PF13007 Transposase C of IS166 homeodomain PF550_11055 PF00199 Catalase PF550_11065 PF08240 Alcohol dehydrogenase GroES-like domain PF550_11065 PF00107 Zinc-binding dehydrogenase PF550_11075 PF00419 Fimbrial protein PF550_11080 PF00577 Outer membrane usher protein PF550_11080 PF13954 PapC N-terminal domain PF550_11080 PF13953 PapC C-terminal domain PF550_11085 PF02753 Pili assembly chaperone PapD, C-terminal domain PF550_11085 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain PF550_11120 PF09339 IclR helix-turn-helix domain PF550_11120 PF01614 Bacterial transcriptional regulator PF550_11130 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family PF550_11130 PF03466 LysR substrate binding domain PF550_11135 PF03050 Transposase IS66 family PF550_11135 PF13817 IS66 C-terminal element PF550_11135 PF13007 Transposase C of IS166 homeodomain PF550_11135 PF13005 zinc-finger binding domain of transposase IS66 PF550_11150 PF03573 outer membrane porin, OprD family PF550_11155 PF00083 Sugar (and other) transporter PF550_11155 PF07690 Major Facilitator Superfamily PF550_11190 PF02689 Helicase PF550_11190 PF05970 PIF1-like helicase PF550_11210 PF01966 HD domain PF550_11210 PF13286 Phosphohydrolase-associated domain PF550_11215 PF13291 ACT domain PF550_11215 PF04607 Region found in RelA / SpoT proteins PF550_11215 PF02824 TGS domain PF550_11225 PF01975 Survival protein SurE PF550_11250 PF07690 Major Facilitator Superfamily PF550_11255 PF13533 Biotin-lipoyl like PF550_11280 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase PF550_11280 PF14572 Phosphoribosyl synthetase-associated domain PF550_11300 PF00005 ABC transporter PF550_11305 PF01032 FecCD transport family PF550_11315 PF00107 Zinc-binding dehydrogenase PF550_11315 PF08240 Alcohol dehydrogenase GroES-like domain PF550_11330 PF06719 AraC-type transcriptional regulator N-terminus PF550_11330 PF12833 Helix-turn-helix domain PF550_11335 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase PF550_11335 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase PF550_11340 PF07690 Major Facilitator Superfamily PF550_11345 PF01370 NAD dependent epimerase/dehydratase family PF550_11350 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family PF550_11350 PF03466 LysR substrate binding domain PF550_11360 PF00920 Dehydratase family PF550_11365 PF00171 Aldehyde dehydrogenase family PF550_11380 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion PF550_11380 PF00529 HlyD membrane-fusion protein of T1SS PF550_11405 PF03466 LysR substrate binding domain PF550_11405 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family PF550_11415 PF08450 SMP-30/Gluconolactonase/LRE-like region PF550_11420 PF00392 Bacterial regulatory proteins, gntR family PF550_11420 PF07702 UTRA domain PF550_11430 PF04909 Amidohydrolase PF550_11435 PF07690 Major Facilitator Superfamily PF550_11455 PF00512 His Kinase A (phospho-acceptor) domain PF550_11455 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PF550_11460 PF00145 C-5 cytosine-specific DNA methylase PF550_11470 PF07687 Peptidase dimerisation domain PF550_11470 PF01546 Peptidase family M20/M25/M40 PF550_11480 PF02254 TrkA-N domain PF550_11480 PF00999 Sodium/hydrogen exchanger family PF550_11485 PF07995 Glucose / Sorbosone dehydrogenase PF550_11490 PF03466 LysR substrate binding domain PF550_11490 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family PF550_11495 PF00857 Isochorismatase family PF550_11505 PF08359 YsiA-like protein, C-terminal region PF550_11505 PF00440 Bacterial regulatory proteins, tetR family PF550_11510 PF12706 Beta-lactamase superfamily domain PF550_11520 PF07992 Pyridine nucleotide-disulphide oxidoreductase PF550_11530 PF09278 MerR, DNA binding PF550_11530 PF00376 MerR family regulatory protein PF550_11545 PF00724 NADH:flavin oxidoreductase / NADH oxidase family PF550_11545 PF07992 Pyridine nucleotide-disulphide oxidoreductase PF550_11550 PF00561 alpha/beta hydrolase fold PF550_11560 PF00171 Aldehyde dehydrogenase family PF550_11570 PF07690 Major Facilitator Superfamily PF550_11575 PF00920 Dehydratase family PF550_11580 PF07729 FCD domain PF550_11580 PF00392 Bacterial regulatory proteins, gntR family PF550_11590 PF03466 LysR substrate binding domain PF550_11590 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family PF550_11595 PF13378 Enolase C-terminal domain-like PF550_11595 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain PF550_11600 PF02426 Muconolactone delta-isomerase PF550_11605 PF00775 Dioxygenase PF550_11605 PF04444 Catechol dioxygenase N terminus PF550_11610 PF01144 Coenzyme A transferase PF550_11615 PF01144 Coenzyme A transferase PF550_11620 PF02803 Thiolase, C-terminal domain PF550_11620 PF00108 Thiolase, N-terminal domain PF550_11625 PF12146 Serine aminopeptidase, S33 PF550_11630 PF01804 Penicillin amidase PF550_11635 PF00171 Aldehyde dehydrogenase family PF550_11645 PF01179 Copper amine oxidase, enzyme domain PF550_11645 PF07833 Copper amine oxidase N-terminal domain PF550_11645 PF02727 Copper amine oxidase, N2 domain PF550_11645 PF02728 Copper amine oxidase, N3 domain PF550_11650 PF12833 Helix-turn-helix domain PF550_11650 PF02311 AraC-like ligand binding domain PF550_11655 PF01613 Flavin reductase like domain PF550_11660 PF00111 2Fe-2S iron-sulfur cluster binding domain PF550_11660 PF00175 Oxidoreductase NAD-binding domain PF550_11675 PF00848 Ring hydroxylating alpha subunit (catalytic domain) PF550_11675 PF00355 Rieske [2Fe-2S] domain PF550_11690 PF08028 Acyl-CoA dehydrogenase, C-terminal domain PF550_11695 PF01425 Amidase PF550_11705 PF07690 Major Facilitator Superfamily PF550_11715 PF00106 short chain dehydrogenase PF550_11730 PF00441 Acyl-CoA dehydrogenase, C-terminal domain PF550_11730 PF02770 Acyl-CoA dehydrogenase, middle domain PF550_11730 PF02771 Acyl-CoA dehydrogenase, N-terminal domain PF550_11735 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family PF550_11735 PF03466 LysR substrate binding domain PF550_11740 PF09339 IclR helix-turn-helix domain PF550_11740 PF01614 Bacterial transcriptional regulator PF550_11745 PF00753 Metallo-beta-lactamase superfamily PF550_11755 PF04143 Sulphur transport PF550_11765 PF01011 PQQ enzyme repeat PF550_11765 PF13360 PQQ-like domain PF550_11770 PF04966 Carbohydrate-selective porin, OprB family PF550_11775 PF05048 Periplasmic copper-binding protein (NosD) PF550_11780 PF01487 Type I 3-dehydroquinase PF550_11785 PF00775 Dioxygenase PF550_11790 PF00775 Dioxygenase PF550_11790 PF12391 Protocatechuate 3,4-dioxygenase beta subunit N terminal PF550_11795 PF02627 Carboxymuconolactone decarboxylase family PF550_11800 PF07690 Major Facilitator Superfamily PF550_11805 PF00561 alpha/beta hydrolase fold PF550_11810 PF10397 Adenylosuccinate lyase C-terminus PF550_11810 PF00206 Lyase PF550_11815 PF02803 Thiolase, C-terminal domain PF550_11815 PF00108 Thiolase, N-terminal domain PF550_11820 PF01144 Coenzyme A transferase PF550_11825 PF01144 Coenzyme A transferase PF550_11830 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase PF550_11835 PF04977 Septum formation initiator PF550_11840 PF04239 Protein of unknown function (DUF421) PF550_11845 PF03952 Enolase, N-terminal domain PF550_11845 PF00113 Enolase, C-terminal TIM barrel domain PF550_11850 PF00793 DAHP synthetase I family PF550_11855 PF00117 Glutamine amidotransferase class-I PF550_11855 PF06418 CTP synthase N-terminus PF550_11885 PF00724 NADH:flavin oxidoreductase / NADH oxidase family PF550_11885 PF07992 Pyridine nucleotide-disulphide oxidoreductase PF550_11900 PF00793 DAHP synthetase I family PF550_11905 PF02694 Uncharacterised BCR, YnfA/UPF0060 family PF550_11910 PF02861 Clp amino terminal domain, pathogenicity island component PF550_11910 PF10431 C-terminal, D2-small domain, of ClpB protein PF550_11910 PF00004 ATPase family associated with various cellular activities (AAA) PF550_11910 PF07724 AAA domain (Cdc48 subfamily) PF550_11910 PF17871 AAA lid domain PF550_11915 PF02617 ATP-dependent Clp protease adaptor protein ClpS PF550_11925 PF02774 Semialdehyde dehydrogenase, dimerisation domain PF550_11925 PF01118 Semialdehyde dehydrogenase, NAD binding domain PF550_11940 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) PF550_11945 PF00291 Pyridoxal-phosphate dependent enzyme PF550_11945 PF00585 C-terminal regulatory domain of Threonine dehydratase PF550_11950 PF02080 TrkA-C domain PF550_11950 PF02254 TrkA-N domain PF550_11955 PF02386 Cation transport protein PF550_11960 PF02253 Phospholipase A1 PF550_11965 PF00675 Insulinase (Peptidase family M16) PF550_11965 PF05193 Peptidase M16 inactive domain PF550_11965 PF08367 Peptidase M16C associated PF550_11970 PF07715 TonB-dependent Receptor Plug Domain PF550_11970 PF00593 TonB dependent receptor PF550_11975 PF00294 pfkB family carbohydrate kinase PF550_11985 PF07290 Protein of unknown function (DUF1449) PF550_12000 PF13005 zinc-finger binding domain of transposase IS66 PF550_12000 PF13817 IS66 C-terminal element PF550_12000 PF03050 Transposase IS66 family PF550_12000 PF13007 Transposase C of IS166 homeodomain PF550_12010 PF01654 Cytochrome bd terminal oxidase subunit I PF550_12015 PF02322 Cytochrome bd terminal oxidase subunit II PF550_12020 PF08173 Membrane bound YbgT-like protein PF550_12030 PF09829 Uncharacterized protein conserved in bacteria (DUF2057) PF550_12040 PF02881 SRP54-type protein, helical bundle domain PF550_12040 PF00448 SRP54-type protein, GTPase domain PF550_12065 PF00478 IMP dehydrogenase / GMP reductase domain PF550_12065 PF00571 CBS domain PF550_12070 PF00202 Aminotransferase class-III PF550_12075 PF00462 Glutaredoxin PF550_12085 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family PF550_12085 PF03466 LysR substrate binding domain PF550_12090 PF00557 Metallopeptidase family M24 PF550_12095 PF05525 Branched-chain amino acid transport protein PF550_12120 PF02896 PEP-utilising enzyme, TIM barrel domain PF550_12120 PF00381 PTS HPr component phosphorylation site PF550_12120 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 PF550_12120 PF00391 PEP-utilising enzyme, mobile domain PF550_12120 PF05524 PEP-utilising enzyme, N-terminal PF550_12125 PF00294 pfkB family carbohydrate kinase PF550_12130 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit PF550_12130 PF02378 Phosphotransferase system, EIIC PF550_12145 PF00990 Diguanylate cyclase, GGDEF domain PF550_12145 PF00563 EAL domain PF550_12145 PF03707 Bacterial signalling protein N terminal repeat PF550_12155 PF13007 Transposase C of IS166 homeodomain PF550_12155 PF13005 zinc-finger binding domain of transposase IS66 PF550_12155 PF03050 Transposase IS66 family PF550_12155 PF13817 IS66 C-terminal element PF550_12175 PF07995 Glucose / Sorbosone dehydrogenase PF550_12180 PF02586 SOS response associated peptidase (SRAP) PF550_12185 PF00916 Sulfate permease family PF550_12185 PF01740 STAS domain PF550_12200 PF13005 zinc-finger binding domain of transposase IS66 PF550_12200 PF13007 Transposase C of IS166 homeodomain PF550_12200 PF03050 Transposase IS66 family PF550_12200 PF13817 IS66 C-terminal element PF550_12210 PF00082 Subtilase family PF550_12210 PF05922 Peptidase inhibitor I9 PF550_12225 PF00324 Amino acid permease PF550_12230 PF00266 Aminotransferase class-V PF550_12235 PF01037 Lrp/AsnC ligand binding domain PF550_12260 PF13419 Haloacid dehalogenase-like hydrolase PF550_12265 PF01479 S4 domain PF550_12270 PF00154 recA bacterial DNA recombination protein PF550_12275 PF02631 RecX family PF550_12290 PF00132 Bacterial transferase hexapeptide (six repeats) PF550_12290 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 PF550_12295 PF07977 FabA-like domain PF550_12300 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD PF550_12300 PF00132 Bacterial transferase hexapeptide (six repeats) PF550_12310 PF07244 Surface antigen variable number repeat PF550_12310 PF01103 Surface antigen PF550_12315 PF13180 PDZ domain PF550_12315 PF17820 PDZ domain PF550_12315 PF02163 Peptidase family M50 PF550_12320 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain PF550_12320 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase PF550_12320 PF13288 DXP reductoisomerase C-terminal domain PF550_12330 PF01255 Putative undecaprenyl diphosphate synthase PF550_12335 PF01765 Ribosome recycling factor PF550_12340 PF00696 Amino acid kinase family PF550_12345 PF04055 Radical SAM superfamily PF550_12345 PF00919 Uncharacterized protein family UPF0004 PF550_12345 PF18693 TRAM domain PF550_12355 PF00989 PAS fold PF550_12355 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PF550_12355 PF00512 His Kinase A (phospho-acceptor) domain PF550_12360 PF02954 Bacterial regulatory protein, Fis family PF550_12360 PF00158 Sigma-54 interaction domain PF550_12360 PF00072 Response regulator receiver domain PF550_12380 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain PF550_12380 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain PF550_12390 PF02542 YgbB family PF550_12400 PF01266 FAD dependent oxidoreductase PF550_12425 PF10415 Fumarase C C-terminus PF550_12425 PF00206 Lyase PF550_12430 PF16363 GDP-mannose 4,6 dehydratase PF550_12435 PF02635 DsrE/DsrF-like family PF550_12455 PF00892 EamA-like transporter family PF550_12460 PF00155 Aminotransferase class I and II PF550_12460 PF00392 Bacterial regulatory proteins, gntR family PF550_12465 PF01638 HxlR-like helix-turn-helix PF550_12470 PF00994 Probable molybdopterin binding domain PF550_12470 PF03454 MoeA C-terminal region (domain IV) PF550_12470 PF03453 MoeA N-terminal region (domain I and II) PF550_12475 PF01967 MoaC family PF550_12475 PF00994 Probable molybdopterin binding domain PF550_12480 PF02391 MoaE protein PF550_12490 PF06463 Molybdenum Cofactor Synthesis C PF550_12490 PF04055 Radical SAM superfamily PF550_12495 PF00384 Molybdopterin oxidoreductase PF550_12495 PF01568 Molydopterin dinucleotide binding domain PF550_12495 PF04879 Molybdopterin oxidoreductase Fe4S4 domain PF550_12500 PF12804 MobA-like NTP transferase domain PF550_12505 PF04324 BFD-like [2Fe-2S] binding domain PF550_12505 PF04879 Molybdopterin oxidoreductase Fe4S4 domain PF550_12505 PF00384 Molybdopterin oxidoreductase PF550_12505 PF01568 Molydopterin dinucleotide binding domain PF550_12510 PF04324 BFD-like [2Fe-2S] binding domain PF550_12510 PF01077 Nitrite and sulphite reductase 4Fe-4S domain PF550_12510 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain PF550_12510 PF07992 Pyridine nucleotide-disulphide oxidoreductase PF550_12510 PF18267 Rubredoxin NAD+ reductase C-terminal domain PF550_12515 PF18267 Rubredoxin NAD+ reductase C-terminal domain PF550_12515 PF13806 Rieske-like [2Fe-2S] domain PF550_12515 PF07992 Pyridine nucleotide-disulphide oxidoreductase PF550_12515 PF04324 BFD-like [2Fe-2S] binding domain PF550_12515 PF01077 Nitrite and sulphite reductase 4Fe-4S domain PF550_12515 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain PF550_12525 PF00072 Response regulator receiver domain PF550_12525 PF00486 Transcriptional regulatory protein, C terminal PF550_12530 PF00005 ABC transporter PF550_12535 PF13438 Domain of unknown function (DUF4113) PF550_12535 PF00817 impB/mucB/samB family PF550_12535 PF11799 impB/mucB/samB family C-terminal domain PF550_12540 PF01220 Dehydroquinase class II PF550_12545 PF00364 Biotin-requiring enzyme PF550_12550 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain PF550_12550 PF02785 Biotin carboxylase C-terminal domain PF550_12550 PF00289 Biotin carboxylase, N-terminal domain PF550_12560 PF12832 MFS_1 like family PF550_12580 PF01645 Conserved region in glutamate synthase PF550_12595 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain PF550_12595 PF01565 FAD binding domain PF550_12600 PF01451 Low molecular weight phosphotyrosine protein phosphatase PF550_12610 PF00465 Iron-containing alcohol dehydrogenase PF550_12615 PF03061 Thioesterase superfamily PF550_12620 PF04185 Phosphoesterase family PF550_12620 PF05506 Domain of unknown function (DUF756) PF550_12630 PF12168 DNA polymerase III subunits tau domain IV DnaB-binding PF550_12630 PF12170 DNA polymerase III tau subunit V interacting with alpha PF550_12630 PF12169 DNA polymerase III subunits gamma and tau domain III PF550_12635 PF07690 Major Facilitator Superfamily PF550_12645 PF00144 Beta-lactamase PF550_12650 PF01575 MaoC like domain PF550_12660 PF02803 Thiolase, C-terminal domain PF550_12660 PF00108 Thiolase, N-terminal domain PF550_12670 PF03466 LysR substrate binding domain PF550_12670 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family PF550_12675 PF00923 Transaldolase/Fructose-6-phosphate aldolase PF550_12685 PF13005 zinc-finger binding domain of transposase IS66 PF550_12685 PF13007 Transposase C of IS166 homeodomain PF550_12685 PF13817 IS66 C-terminal element PF550_12685 PF03050 Transposase IS66 family PF550_12705 PF01037 Lrp/AsnC ligand binding domain PF550_12710 PF03594 Benzoate membrane transport protein PF550_12715 PF02308 MgtC family PF550_12720 PF00690 Cation transporter/ATPase, N-terminus PF550_12720 PF00689 Cation transporting ATPase, C-terminus PF550_12745 PF00582 Universal stress protein family PF550_12750 PF12848 ABC transporter PF550_12750 PF00005 ABC transporter PF550_12770 PF00593 TonB dependent receptor PF550_12770 PF07715 TonB-dependent Receptor Plug Domain PF550_12800 PF00924 Mechanosensitive ion channel PF550_12805 PF07715 TonB-dependent Receptor Plug Domain PF550_12805 PF00593 TonB dependent receptor PF550_12810 PF00440 Bacterial regulatory proteins, tetR family PF550_12820 PF01037 Lrp/AsnC ligand binding domain PF550_12825 PF01817 Chorismate mutase type II PF550_12850 PF00577 Outer membrane usher protein PF550_12850 PF13954 PapC N-terminal domain PF550_12850 PF13953 PapC C-terminal domain PF550_12865 PF01433 Peptidase family M1 domain PF550_12865 PF17432 Domain of unknown function (DUF3458_C) ARM repeats PF550_12865 PF11940 Domain of unknown function (DUF3458) Ig-like fold PF550_12880 PF02110 Hydroxyethylthiazole kinase family PF550_12885 PF06445 GyrI-like small molecule binding domain PF550_12895 PF14493 Helix-turn-helix domain PF550_12895 PF05970 PIF1-like helicase PF550_12900 PF00465 Iron-containing alcohol dehydrogenase PF550_12915 PF00171 Aldehyde dehydrogenase family PF550_12920 PF13520 Amino acid permease PF550_12925 PF06751 Ethanolamine ammonia lyase large subunit (EutB) PF550_12930 PF05985 Ethanolamine ammonia-lyase light chain (EutC) PF550_12935 PF02540 NAD synthase PF550_12935 PF00117 Glutamine amidotransferase class-I PF550_12935 PF00958 GMP synthase C terminal domain PF550_12940 PF00749 tRNA synthetases class I (E and Q), catalytic domain PF550_12940 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain PF550_12945 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD PF550_12950 PF00149 Calcineurin-like phosphoesterase PF550_12960 PF00881 Nitroreductase family PF550_12970 PF17209 Hfq protein PF550_12980 PF08676 MutL C terminal dimerisation domain PF550_12980 PF01119 DNA mismatch repair protein, C-terminal domain PF550_12985 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE PF550_12990 PF01479 S4 domain PF550_12990 PF00849 RNA pseudouridylate synthase PF550_13005 PF00849 RNA pseudouridylate synthase PF550_13005 PF01479 S4 domain PF550_13015 PF04284 Protein of unknown function (DUF441) PF550_13020 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family PF550_13020 PF03466 LysR substrate binding domain PF550_13035 PF07690 Major Facilitator Superfamily PF550_13040 PF00027 Cyclic nucleotide-binding domain PF550_13040 PF00520 Ion transport protein PF550_13050 PF00330 Aconitase family (aconitate hydratase) PF550_13050 PF11791 Aconitate B N-terminal domain PF550_13050 PF06434 Aconitate hydratase 2 N-terminus PF550_13065 PF01103 Surface antigen PF550_13065 PF07244 Surface antigen variable number repeat PF550_13065 PF17243 POTRA domain TamA domain 1 PF550_13070 PF07690 Major Facilitator Superfamily PF550_13075 PF03232 Ubiquinone biosynthesis protein COQ7 PF550_13085 PF00120 Glutamine synthetase, catalytic domain PF550_13090 PF00072 Response regulator receiver domain PF550_13090 PF00486 Transcriptional regulatory protein, C terminal PF550_13095 PF00512 His Kinase A (phospho-acceptor) domain PF550_13095 PF13493 Domain of unknown function (DUF4118) PF550_13095 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PF550_13095 PF02702 Osmosensitive K+ channel His kinase sensor domain PF550_13100 PF02669 K+-transporting ATPase, c chain PF550_13110 PF03814 Potassium-transporting ATPase A subunit PF550_13120 PF02152 Dihydroneopterin aldolase PF550_13125 PF03109 ABC1 family PF550_13130 PF00899 ThiF family PF550_13135 PF01613 Flavin reductase like domain PF550_13140 PF00501 AMP-binding enzyme PF550_13140 PF13193 AMP-binding enzyme C-terminal domain PF550_13145 PF00441 Acyl-CoA dehydrogenase, C-terminal domain PF550_13145 PF02770 Acyl-CoA dehydrogenase, middle domain PF550_13145 PF02771 Acyl-CoA dehydrogenase, N-terminal domain PF550_13150 PF00106 short chain dehydrogenase PF550_13155 PF12833 Helix-turn-helix domain PF550_13160 PF13847 Methyltransferase domain PF550_13160 PF17827 PrmC N-terminal domain PF550_13165 PF00472 RF-1 domain PF550_13165 PF03462 PCRF domain PF550_13175 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family PF550_13175 PF03466 LysR substrate binding domain PF550_13190 PF00296 Luciferase-like monooxygenase PF550_13200 PF13994 PgaD-like protein PF550_13205 PF00535 Glycosyl transferase family 2 PF550_13210 PF14883 Hypothetical glycosyl hydrolase family 13 PF550_13210 PF01522 Polysaccharide deacetylase PF550_13220 PF03618 Kinase/pyrophosphorylase PF550_13225 PF02896 PEP-utilising enzyme, TIM barrel domain PF550_13225 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain PF550_13225 PF00391 PEP-utilising enzyme, mobile domain PF550_13235 PF00116 Cytochrome C oxidase subunit II, periplasmic domain PF550_13235 PF06481 COX Aromatic Rich Motif PF550_13240 PF00115 Cytochrome C and Quinol oxidase polypeptide I PF550_13245 PF00510 Cytochrome c oxidase subunit III PF550_13250 PF03626 Prokaryotic Cytochrome C oxidase subunit IV PF550_13255 PF01040 UbiA prenyltransferase family PF550_13260 PF01250 Ribosomal protein S6 PF550_13265 PF01084 Ribosomal protein S18 PF550_13270 PF03948 Ribosomal protein L9, C-terminal domain PF550_13270 PF01281 Ribosomal protein L9, N-terminal domain PF550_13275 PF00772 DnaB-like helicase N terminal domain PF550_13275 PF03796 DnaB-like helicase C terminal domain PF550_13280 PF01168 Alanine racemase, N-terminal domain PF550_13280 PF00842 Alanine racemase, C-terminal domain PF550_13290 PF08379 Bacterial transglutaminase-like N-terminal region PF550_13290 PF01841 Transglutaminase-like superfamily PF550_13300 PF14403 Circularly permuted ATP-grasp type 2 PF550_13310 PF01134 Glucose inhibited division protein A PF550_13310 PF13932 GidA associated domain PF550_13330 PF02954 Bacterial regulatory protein, Fis family PF550_13335 PF01808 AICARFT/IMPCHase bienzyme PF550_13335 PF02142 MGS-like domain PF550_13340 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain PF550_13340 PF02843 Phosphoribosylglycinamide synthetase, C domain PF550_13340 PF02844 Phosphoribosylglycinamide synthetase, N domain PF550_13345 PF03180 NLPA lipoprotein PF550_13350 PF09383 NIL domain PF550_13350 PF00005 ABC transporter PF550_13355 PF00528 Binding-protein-dependent transport system inner membrane component PF550_13360 PF16123 Hydroxyacylglutathione hydrolase C-terminus PF550_13360 PF00753 Metallo-beta-lactamase superfamily PF550_13370 PF00375 Sodium:dicarboxylate symporter family PF550_13390 PF07995 Glucose / Sorbosone dehydrogenase PF550_13400 PF00892 EamA-like transporter family PF550_13405 PF01177 Asp/Glu/Hydantoin racemase PF550_13415 PF02470 MlaD protein PF550_13420 PF04403 Paraquat-inducible protein A PF550_13450 PF00293 NUDIX domain PF550_13455 PF00083 Sugar (and other) transporter PF550_13455 PF08946 Osmosensory transporter coiled coil PF550_13485 PF03466 LysR substrate binding domain PF550_13485 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family PF550_13525 PF13332 Hemagglutinin repeat PF550_13525 PF13018 Extended Signal Peptide of Type V secretion system PF550_13525 PF13332 Hemagglutinin repeat PF550_13525 PF05860 haemagglutination activity domain PF550_13525 PF04829 Pre-toxin domain with VENN motif PF550_13525 PF13018 Extended Signal Peptide of Type V secretion system PF550_13525 PF04829 Pre-toxin domain with VENN motif PF550_13525 PF05860 haemagglutination activity domain PF550_13530 PF08479 POTRA domain, ShlB-type PF550_13530 PF17287 POTRA domain PF550_13530 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB PF550_13555 PF03793 PASTA domain PF550_13555 PF00069 Protein kinase domain PF550_13575 PF00814 Glycoprotease family PF550_13580 PF01165 Ribosomal protein S21 PF550_13585 PF09424 Yqey-like protein PF550_13590 PF01435 Peptidase family M48 PF550_13595 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain PF550_13595 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain PF550_13610 PF00156 Phosphoribosyl transferase domain PF550_13615 PF02674 Colicin V production protein PF550_13620 PF01180 Dihydroorotate dehydrogenase PF550_13640 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus PF550_13640 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus PF550_13645 PF00881 Nitroreductase family PF550_13655 PF00270 DEAD/DEAH box helicase PF550_13655 PF00271 Helicase conserved C-terminal domain PF550_13660 PF00313 'Cold-shock' DNA-binding domain PF550_13675 PF00140 Sigma-70 factor, region 1.2 PF550_13675 PF04542 Sigma-70 region 2 PF550_13675 PF04545 Sigma-70, region 4 PF550_13680 PF04241 Protein of unknown function (DUF423) PF550_13690 PF05690 Thiazole biosynthesis protein ThiG PF550_13700 PF03883 Peroxide stress protein YaaA PF550_13710 PF00753 Metallo-beta-lactamase superfamily PF550_13715 PF07687 Peptidase dimerisation domain PF550_13715 PF01546 Peptidase family M20/M25/M40 PF550_13725 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) PF550_13730 PF01842 ACT domain PF550_13730 PF01817 Chorismate mutase type II PF550_13730 PF00800 Prephenate dehydratase PF550_13735 PF00756 Putative esterase PF550_13740 PF02771 Acyl-CoA dehydrogenase, N-terminal domain PF550_13740 PF00441 Acyl-CoA dehydrogenase, C-terminal domain PF550_13740 PF02770 Acyl-CoA dehydrogenase, middle domain PF550_13745 PF00375 Sodium:dicarboxylate symporter family PF550_13750 PF00591 Glycosyl transferase family, a/b domain PF550_13750 PF02885 Glycosyl transferase family, helical bundle domain PF550_13755 PF07023 Protein of unknown function (DUF1315) PF550_13760 PF01513 ATP-NAD kinase PF550_13765 PF14814 Bifunctional transglycosylase second domain PF550_13765 PF00905 Penicillin binding protein transpeptidase domain PF550_13765 PF00912 Transglycosylase PF550_13775 PF00293 NUDIX domain PF550_13785 PF00512 His Kinase A (phospho-acceptor) domain PF550_13785 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PF550_13785 PF08521 Two-component sensor kinase N-terminal PF550_13790 PF00072 Response regulator receiver domain PF550_13790 PF00486 Transcriptional regulatory protein, C terminal PF550_13820 PF18389 TrmO C-terminal domain PF550_13820 PF01980 tRNA-methyltransferase O PF550_13825 PF00175 Oxidoreductase NAD-binding domain PF550_13825 PF00970 Oxidoreductase FAD-binding domain PF550_13830 PF02567 Phenazine biosynthesis-like protein PF550_13835 PF00155 Aminotransferase class I and II PF550_13835 PF00392 Bacterial regulatory proteins, gntR family PF550_13840 PF01136 Peptidase family U32 PF550_13840 PF16325 Peptidase family U32 C-terminal domain PF550_13845 PF00037 4Fe-4S binding domain PF550_13850 PF00893 Small Multidrug Resistance protein PF550_13855 PF00005 ABC transporter PF550_13860 PF00528 Binding-protein-dependent transport system inner membrane component PF550_13865 PF00528 Binding-protein-dependent transport system inner membrane component PF550_13870 PF00497 Bacterial extracellular solute-binding proteins, family 3 PF550_13875 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family PF550_13875 PF03466 LysR substrate binding domain PF550_13880 PF13533 Biotin-lipoyl like PF550_13885 PF00873 AcrB/AcrD/AcrF family PF550_13890 PF02321 Outer membrane efflux protein PF550_13895 PF00464 Serine hydroxymethyltransferase PF550_13925 PF00005 ABC transporter PF550_13930 PF01061 ABC-2 type transporter PF550_13935 PF14819 Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term PF550_13935 PF14489 QueF-like protein PF550_13945 PF01098 Cell cycle protein PF550_13950 PF13406 Transglycosylase SLT domain PF550_13955 PF03330 Lytic transglycolase PF550_13955 PF05036 Sporulation related domain PF550_13975 PF12833 Helix-turn-helix domain PF550_13985 PF00889 Elongation factor TS PF550_13990 PF00318 Ribosomal protein S2 PF550_13995 PF00557 Metallopeptidase family M24 PF550_14005 PF07690 Major Facilitator Superfamily PF550_14015 PF07992 Pyridine nucleotide-disulphide oxidoreductase PF550_14015 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain PF550_14020 PF04055 Radical SAM superfamily PF550_14025 PF00441 Acyl-CoA dehydrogenase, C-terminal domain PF550_14025 PF02771 Acyl-CoA dehydrogenase, N-terminal domain PF550_14025 PF09317 Domain of unknown function (DUF1974) PF550_14040 PF05221 S-adenosyl-L-homocysteine hydrolase PF550_14040 PF00670 S-adenosyl-L-homocysteine hydrolase, NAD binding domain PF550_14045 PF02219 Methylenetetrahydrofolate reductase PF550_14050 PF04452 RNA methyltransferase PF550_14055 PF03707 Bacterial signalling protein N terminal repeat PF550_14055 PF00563 EAL domain PF550_14055 PF00990 Diguanylate cyclase, GGDEF domain PF550_14060 PF01515 Phosphate acetyl/butaryl transferase PF550_14060 PF00390 Malic enzyme, N-terminal domain PF550_14060 PF03949 Malic enzyme, NAD binding domain PF550_14065 PF01743 Poly A polymerase head domain PF550_14065 PF12627 Probable RNA and SrmB- binding site of polymerase A PF550_14070 PF13180 PDZ domain PF550_14075 PF01784 NIF3 (NGG1p interacting factor 3) PF550_14080 PF02777 Iron/manganese superoxide dismutases, C-terminal domain PF550_14080 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain PF550_14115 PF01040 UbiA prenyltransferase family PF550_14120 PF04345 Chorismate lyase PF550_14125 PF03951 Glutamine synthetase, beta-Grasp domain PF550_14125 PF00120 Glutamine synthetase, catalytic domain PF550_14130 PF00854 POT family PF550_14140 PF00589 Phage integrase family PF550_14140 PF13356 Arm DNA-binding domain PF550_14205 PF03869 Arc-like DNA binding domain PF550_14220 PF03050 Transposase IS66 family PF550_14220 PF13817 IS66 C-terminal element PF550_14220 PF13007 Transposase C of IS166 homeodomain PF550_14220 PF13005 zinc-finger binding domain of transposase IS66 PF550_14235 PF08299 Bacterial dnaA protein helix-turn-helix PF550_14235 PF11638 DnaA N-terminal domain PF550_14235 PF00308 Bacterial dnaA protein PF550_14240 PF01594 AI-2E family transporter PF550_14245 PF02769 AIR synthase related protein, C-terminal domain PF550_14245 PF00586 AIR synthase related protein, N-terminal domain PF550_14250 PF00551 Formyl transferase PF550_14255 PF12697 Alpha/beta hydrolase family PF550_14260 PF01343 Peptidase family S49 PF550_14260 PF06965 Na+/H+ antiporter 1 PF550_14270 PF13567 Domain of unknown function (DUF4131) PF550_14270 PF03772 Competence protein PF550_14270 PF00753 Metallo-beta-lactamase superfamily PF550_14275 PF00005 ABC transporter PF550_14280 PF02687 FtsX-like permease family PF550_14280 PF12704 MacB-like periplasmic core domain PF550_14290 PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 PF550_14305 PF00266 Aminotransferase class-V PF550_14315 PF13533 Biotin-lipoyl like PF550_14335 PF00535 Glycosyl transferase family 2 PF550_14350 PF03989 DNA gyrase C-terminal domain, beta-propeller PF550_14350 PF00521 DNA gyrase/topoisomerase IV, subunit A PF550_14355 PF01012 Electron transfer flavoprotein domain PF550_14355 PF00766 Electron transfer flavoprotein FAD-binding domain PF550_14360 PF01012 Electron transfer flavoprotein domain PF550_14365 PF00589 Phage integrase family PF550_14365 PF02899 Phage integrase, N-terminal SAM-like domain PF550_14370 PF01810 LysE type translocator PF550_14375 PF01678 Diaminopimelate epimerase PF550_14380 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain PF550_14380 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain PF550_14390 PF00324 Amino acid permease PF550_14395 PF18073 Rubredoxin metal binding domain PF550_14405 PF00152 tRNA synthetases class II (D, K and N) PF550_14410 PF11890 Domain of unknown function (DUF3410) PF550_14410 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain PF550_14410 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain PF550_14415 PF06803 Protein of unknown function (DUF1232) PF550_14420 PF02634 FdhD/NarQ family PF550_14425 PF00384 Molybdopterin oxidoreductase PF550_14430 PF02595 Glycerate kinase family PF550_14445 PF00881 Nitroreductase family PF550_14465 PF09857 Putative toxin of bacterial toxin-antitoxin pair PF550_14490 PF01272 Transcription elongation factor, GreA/GreB, C-term PF550_14490 PF03449 Transcription elongation factor, N-terminal PF550_14495 PF01464 Transglycosylase SLT domain PF550_14495 PF00497 Bacterial extracellular solute-binding proteins, family 3 PF550_14505 PF01171 PP-loop family PF550_14510 PF01464 Transglycosylase SLT domain PF550_14515 PF01435 Peptidase family M48 PF550_14525 PF00873 AcrB/AcrD/AcrF family PF550_14530 PF03009 Glycerophosphoryl diester phosphodiesterase family PF550_14535 PF00753 Metallo-beta-lactamase superfamily PF550_14540 PF01219 Prokaryotic diacylglycerol kinase PF550_14545 PF00118 TCP-1/cpn60 chaperonin family PF550_14550 PF00166 Chaperonin 10 Kd subunit PF550_14560 PF00149 Calcineurin-like phosphoesterase PF550_14565 PF00781 Diacylglycerol kinase catalytic domain PF550_14570 PF00821 Phosphoenolpyruvate carboxykinase C-terminal P-loop domain PF550_14570 PF17297 Phosphoenolpyruvate carboxykinase N-terminal domain PF550_14575 PF16901 C-terminal domain of alpha-glycerophosphate oxidase PF550_14575 PF01266 FAD dependent oxidoreductase PF550_14580 PF02782 FGGY family of carbohydrate kinases, C-terminal domain PF550_14580 PF00370 FGGY family of carbohydrate kinases, N-terminal domain PF550_14585 PF00083 Sugar (and other) transporter PF550_14600 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain PF550_14600 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain PF550_14615 PF16655 PhoD-like phosphatase, N-terminal domain PF550_14615 PF09423 PhoD-like phosphatase PF550_14635 PF00809 Pterin binding enzyme PF550_14640 PF00004 ATPase family associated with various cellular activities (AAA) PF550_14640 PF01434 Peptidase family M41 PF550_14640 PF17862 AAA+ lid domain PF550_14640 PF06480 FtsH Extracellular PF550_14645 PF01728 FtsJ-like methyltransferase PF550_14650 PF01985 CRS1 / YhbY (CRM) domain PF550_14665 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain PF550_14665 PF00117 Glutamine amidotransferase class-I PF550_14670 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain PF550_14670 PF02142 MGS-like domain PF550_14670 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain PF550_14675 PF01272 Transcription elongation factor, GreA/GreB, C-term PF550_14675 PF03449 Transcription elongation factor, N-terminal PF550_14680 PF00132 Bacterial transferase hexapeptide (six repeats) PF550_14685 PF00582 Universal stress protein family PF550_14690 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain PF550_14700 PF09587 Bacterial capsule synthesis protein PGA_cap PF550_14715 PF00999 Sodium/hydrogen exchanger family PF550_14720 PF04228 Putative neutral zinc metallopeptidase PF550_14725 PF05661 Protein of unknown function (DUF808) PF550_14730 PF00579 tRNA synthetases class I (W and Y) PF550_14735 PF02629 CoA binding domain PF550_14735 PF00549 CoA-ligase PF550_14740 PF00549 CoA-ligase PF550_14740 PF08442 ATP-grasp domain PF550_14745 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain PF550_14745 PF07992 Pyridine nucleotide-disulphide oxidoreductase PF550_14750 PF02817 e3 binding domain PF550_14750 PF00364 Biotin-requiring enzyme PF550_14750 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) PF550_14755 PF02779 Transketolase, pyrimidine binding domain PF550_14755 PF00676 Dehydrogenase E1 component PF550_14755 PF16870 2-oxoglutarate dehydrogenase C-terminal PF550_14755 PF16078 2-oxoglutarate dehydrogenase N-terminus PF550_14770 PF13085 2Fe-2S iron-sulfur cluster binding domain PF550_14775 PF02910 Fumarate reductase flavoprotein C-term PF550_14775 PF00890 FAD binding domain PF550_14780 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit PF550_14785 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit PF550_14790 PF00285 Citrate synthase, C-terminal domain PF550_14800 PF00581 Rhodanese-like domain PF550_14800 PF17773 UPF0176 acylphosphatase like domain PF550_14820 PF00140 Sigma-70 factor, region 1.2 PF550_14820 PF04545 Sigma-70, region 4 PF550_14820 PF04546 Sigma-70, non-essential region PF550_14820 PF03979 Sigma-70 factor, region 1.1 PF550_14820 PF04539 Sigma-70 region 3 PF550_14820 PF04542 Sigma-70 region 2 PF550_14825 PF04359 Protein of unknown function (DUF493) PF550_14830 PF03099 Biotin/lipoate A/B protein ligase family PF550_14840 PF00465 Iron-containing alcohol dehydrogenase PF550_14845 PF13520 Amino acid permease PF550_14850 PF03358 NADPH-dependent FMN reductase PF550_14855 PF01638 HxlR-like helix-turn-helix PF550_14860 PF00588 SpoU rRNA Methylase family PF550_14865 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases PF550_14865 PF14824 Sirohaem biosynthesis protein central PF550_14865 PF10414 Sirohaem synthase dimerisation region PF550_14870 PF02403 Seryl-tRNA synthetase N-terminal domain PF550_14870 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) PF550_14880 PF03548 Outer membrane lipoprotein carrier protein LolA PF550_14885 PF01016 Ribosomal L27 protein PF550_14890 PF00829 Ribosomal prokaryotic L21 protein PF550_14900 PF00348 Polyprenyl synthetase PF550_14910 PF01569 PAP2 superfamily PF550_14915 PF00529 HlyD membrane-fusion protein of T1SS PF550_14915 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion PF550_14920 PF00873 AcrB/AcrD/AcrF family PF550_14925 PF02321 Outer membrane efflux protein PF550_14930 PF01906 Putative heavy-metal-binding PF550_14935 PF01906 Putative heavy-metal-binding PF550_14955 PF10458 Valyl tRNA synthetase tRNA binding arm PF550_14955 PF00133 tRNA synthetases class I (I, L, M and V) PF550_14955 PF08264 Anticodon-binding domain of tRNA PF550_14960 PF13649 Methyltransferase domain PF550_14975 PF03466 LysR substrate binding domain PF550_14975 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family PF550_14980 PF00909 Ammonium Transporter Family PF550_14990 PF00512 His Kinase A (phospho-acceptor) domain PF550_14990 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PF550_14990 PF08521 Two-component sensor kinase N-terminal PF550_14995 PF00486 Transcriptional regulatory protein, C terminal PF550_14995 PF00072 Response regulator receiver domain PF550_15015 PF13817 IS66 C-terminal element PF550_15015 PF13007 Transposase C of IS166 homeodomain PF550_15015 PF13005 zinc-finger binding domain of transposase IS66 PF550_15015 PF03050 Transposase IS66 family PF550_15030 PF03050 Transposase IS66 family PF550_15030 PF13005 zinc-finger binding domain of transposase IS66 PF550_15030 PF13817 IS66 C-terminal element PF550_15030 PF13007 Transposase C of IS166 homeodomain PF550_15055 PF01734 Patatin-like phospholipase PF550_15065 PF01145 SPFH domain / Band 7 family PF550_15070 PF04237 YjbR PF550_15075 PF00348 Polyprenyl synthetase PF550_15080 PF04303 PrpF protein PF550_15085 PF00324 Amino acid permease PF550_15120 PF01965 DJ-1/PfpI family PF550_15125 PF00698 Acyl transferase domain PF550_15125 PF08990 Erythronolide synthase docking PF550_15125 PF09277 Erythronolide synthase, docking PF550_15125 PF16197 Ketoacyl-synthetase C-terminal extension PF550_15125 PF00109 Beta-ketoacyl synthase, N-terminal domain PF550_15125 PF02801 Beta-ketoacyl synthase, C-terminal domain PF550_15125 PF08659 KR domain PF550_15125 PF00550 Phosphopantetheine attachment site PF550_15125 PF14765 Polyketide synthase dehydratase PF550_15125 PF08240 Alcohol dehydrogenase GroES-like domain PF550_15130 PF06719 AraC-type transcriptional regulator N-terminus PF550_15130 PF12833 Helix-turn-helix domain PF550_15135 PF02673 Bacitracin resistance protein BacA PF550_15155 PF02525 Flavodoxin-like fold PF550_15170 PF01507 Phosphoadenosine phosphosulfate reductase family PF550_15175 PF03007 Wax ester synthase-like Acyl-CoA acyltransferase domain PF550_15175 PF06974 Protein of unknown function (DUF1298) PF550_15185 PF10150 Ribonuclease E/G family PF550_15185 PF00575 S1 RNA binding domain PF550_15190 PF02545 Maf-like protein PF550_15195 PF04093 rod shape-determining protein MreD PF550_15200 PF04085 rod shape-determining protein MreC PF550_15210 PF02686 Glu-tRNAGln amidotransferase C subunit PF550_15215 PF01425 Amidase PF550_15220 PF02934 GatB/GatE catalytic domain PF550_15220 PF02637 GatB domain PF550_15245 PF05992 SbmA/BacA-like family PF550_15250 PF13291 ACT domain PF550_15250 PF00291 Pyridoxal-phosphate dependent enzyme PF550_15255 PF01734 Patatin-like phospholipase PF550_15260 PF01235 Sodium:alanine symporter family PF550_15275 PF00881 Nitroreductase family PF550_15280 PF07690 Major Facilitator Superfamily PF550_15285 PF12805 FUSC-like inner membrane protein yccS PF550_15295 PF00667 FAD binding domain PF550_15295 PF00258 Flavodoxin PF550_15295 PF00175 Oxidoreductase NAD-binding domain PF550_15335 PF03734 L,D-transpeptidase catalytic domain PF550_15335 PF17969 L,D-transpeptidase C-terminal domain PF550_15340 PF04304 Protein of unknown function (DUF454) PF550_15350 PF08085 Entericidin EcnA/B family PF550_15355 PF07687 Peptidase dimerisation domain PF550_15355 PF01546 Peptidase family M20/M25/M40 PF550_15365 PF01584 CheW-like domain PF550_15365 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PF550_15365 PF01627 Hpt domain PF550_15365 PF00072 Response regulator receiver domain PF550_15370 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain PF550_15370 PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term PF550_15375 PF01584 CheW-like domain PF550_15380 PF00072 Response regulator receiver domain PF550_15385 PF00072 Response regulator receiver domain PF550_15400 PF00873 AcrB/AcrD/AcrF family PF550_15405 PF03129 Anticodon binding domain PF550_15405 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) PF550_15405 PF04073 Aminoacyl-tRNA editing domain PF550_15410 PF07411 Domain of unknown function (DUF1508) PF550_15415 PF03831 PhnA domain PF550_15415 PF08274 PhnA Zinc-Ribbon PF550_15420 PF04343 Protein of unknown function, DUF488 PF550_15430 PF01571 Aminomethyltransferase folate-binding domain PF550_15435 PF10411 Disulfide bond isomerase protein N-terminus PF550_15435 PF13098 Thioredoxin-like domain PF550_15445 PF03547 Membrane transport protein PF550_15450 PF00724 NADH:flavin oxidoreductase / NADH oxidase family PF550_15455 PF00593 TonB dependent receptor PF550_15455 PF07715 TonB-dependent Receptor Plug Domain PF550_15460 PF02245 Methylpurine-DNA glycosylase (MPG) PF550_15465 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain PF550_15465 PF06827 Zinc finger found in FPG and IleRS PF550_15465 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain PF550_15480 PF01741 Large-conductance mechanosensitive channel, MscL PF550_15485 PF00679 Elongation factor G C-terminus PF550_15485 PF00009 Elongation factor Tu GTP binding domain PF550_15485 PF03144 Elongation factor Tu domain 2 PF550_15490 PF00860 Permease family PF550_15495 PF05175 Methyltransferase small domain PF550_15495 PF08468 Methyltransferase small domain N-terminal PF550_15500 PF00324 Amino acid permease PF550_15505 PF01139 tRNA-splicing ligase RtcB PF550_15515 PF00691 OmpA family PF550_15515 PF13505 Outer membrane protein beta-barrel domain PF550_15525 PF02803 Thiolase, C-terminal domain PF550_15525 PF00108 Thiolase, N-terminal domain PF550_15535 PF00893 Small Multidrug Resistance protein PF550_15545 PF01077 Nitrite and sulphite reductase 4Fe-4S domain PF550_15545 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain PF550_15550 PF01011 PQQ enzyme repeat PF550_15555 PF04966 Carbohydrate-selective porin, OprB family PF550_15560 PF02515 CoA-transferase family III PF550_15565 PF02311 AraC-like ligand binding domain PF550_15565 PF12833 Helix-turn-helix domain PF550_15570 PF02803 Thiolase, C-terminal domain PF550_15570 PF00108 Thiolase, N-terminal domain PF550_15575 PF00378 Enoyl-CoA hydratase/isomerase PF550_15575 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain PF550_15575 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain PF550_15600 PF03006 Haemolysin-III related PF550_15605 PF00083 Sugar (and other) transporter PF550_15605 PF07690 Major Facilitator Superfamily PF550_15615 PF02810 SEC-C motif PF550_15615 PF01043 SecA preprotein cross-linking domain PF550_15615 PF07516 SecA Wing and Scaffold domain PF550_15615 PF07517 SecA DEAD-like domain PF550_15620 PF10417 C-terminal domain of 1-Cys peroxiredoxin PF550_15620 PF00578 AhpC/TSA family PF550_15625 PF00753 Metallo-beta-lactamase superfamily PF550_15640 PF02875 Mur ligase family, glutamate ligase domain PF550_15640 PF08245 Mur ligase middle domain PF550_15645 PF01039 Carboxyl transferase domain PF550_15650 PF00290 Tryptophan synthase alpha chain PF550_15675 PF00291 Pyridoxal-phosphate dependent enzyme PF550_15680 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase PF550_15685 PF07715 TonB-dependent Receptor Plug Domain PF550_15685 PF00593 TonB dependent receptor PF550_15690 PF01923 Cobalamin adenosyltransferase PF550_15710 PF02696 Uncharacterized ACR, YdiU/UPF0061 family PF550_15715 PF00072 Response regulator receiver domain PF550_15715 PF00486 Transcriptional regulatory protein, C terminal PF550_15720 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PF550_15720 PF00672 HAMP domain PF550_15720 PF00512 His Kinase A (phospho-acceptor) domain PF550_15730 PF12806 Acetyl-CoA dehydrogenase C-terminal like PF550_15730 PF02770 Acyl-CoA dehydrogenase, middle domain PF550_15730 PF02771 Acyl-CoA dehydrogenase, N-terminal domain PF550_15730 PF00441 Acyl-CoA dehydrogenase, C-terminal domain PF550_15735 PF00441 Acyl-CoA dehydrogenase, C-terminal domain PF550_15735 PF12806 Acetyl-CoA dehydrogenase C-terminal like PF550_15735 PF02770 Acyl-CoA dehydrogenase, middle domain PF550_15735 PF02771 Acyl-CoA dehydrogenase, N-terminal domain PF550_15740 PF06146 Phosphate-starvation-inducible E PF550_15760 PF00593 TonB dependent receptor PF550_15760 PF07715 TonB-dependent Receptor Plug Domain PF550_15770 PF02938 GAD domain PF550_15770 PF00152 tRNA synthetases class II (D, K and N) PF550_15770 PF01336 OB-fold nucleic acid binding domain PF550_15775 PF17101 Stealth protein CR1, conserved region 1 PF550_15775 PF11380 Stealth protein CR2, conserved region 2 PF550_15775 PF17102 Stealth protein CR3, conserved region 3 PF550_15800 PF13439 Glycosyltransferase Family 4 PF550_15800 PF00534 Glycosyl transferases group 1 PF550_15805 PF00535 Glycosyl transferase family 2 PF550_15810 PF01522 Polysaccharide deacetylase PF550_15825 PF01063 Amino-transferase class IV PF550_15830 PF03710 Glutamate-ammonia ligase adenylyltransferase PF550_15830 PF08335 GlnD PII-uridylyltransferase PF550_15835 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PF550_15835 PF00512 His Kinase A (phospho-acceptor) domain PF550_15835 PF07689 KaiB domain PF550_15845 PF02547 Queuosine biosynthesis protein PF550_15860 PF01702 Queuine tRNA-ribosyltransferase PF550_15865 PF02699 Preprotein translocase subunit PF550_15870 PF02355 Protein export membrane protein PF550_15870 PF13721 SecD export protein N-terminal TM region PF550_15870 PF07549 SecD/SecF GG Motif PF550_15875 PF07549 SecD/SecF GG Motif PF550_15875 PF02355 Protein export membrane protein PF550_15880 PF04127 DNA / pantothenate metabolism flavoprotein PF550_15880 PF02441 Flavoprotein PF550_15885 PF04002 RadC-like JAB domain PF550_15890 PF01062 Bestrophin, RFP-TM, chloride channel PF550_15895 PF02811 PHP domain PF550_15900 PF04279 Intracellular septation protein A PF550_15905 PF03795 YCII-related domain PF550_15915 PF01266 FAD dependent oxidoreductase PF550_15915 PF05430 S-adenosyl-L-methionine-dependent methyltransferase PF550_15925 PF04461 Protein of unknown function (DUF520) PF550_15935 PF03061 Thioesterase superfamily PF550_15940 PF00085 Thioredoxin PF550_15945 PF00561 alpha/beta hydrolase fold PF550_15950 PF04273 Putative phosphatase (DUF442) PF550_15950 PF00753 Metallo-beta-lactamase superfamily PF550_15960 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain PF550_15960 PF07992 Pyridine nucleotide-disulphide oxidoreductase PF550_15995 PF00990 Diguanylate cyclase, GGDEF domain PF550_15995 PF17152 Periplasmic sensor domain PF550_16000 PF00691 OmpA family PF550_16000 PF01389 OmpA-like transmembrane domain PF550_16005 PF00149 Calcineurin-like phosphoesterase PF550_16005 PF10518 TAT (twin-arginine translocation) pathway signal sequence PF550_16010 PF13091 PLD-like domain PF550_16020 PF16360 GTP-binding GTPase Middle Region PF550_16020 PF13167 GTP-binding GTPase N-terminal PF550_16020 PF01926 50S ribosome-binding GTPase PF550_16040 PF00149 Calcineurin-like phosphoesterase PF550_16045 PF00398 Ribosomal RNA adenine dimethylase PF550_16050 PF04166 Pyridoxal phosphate biosynthetic protein PdxA PF550_16055 PF00572 Ribosomal protein L13 PF550_16060 PF00380 Ribosomal protein S9/S16 PF550_16065 PF00043 Glutathione S-transferase, C-terminal domain PF550_16065 PF13417 Glutathione S-transferase, N-terminal domain PF550_16070 PF04386 Stringent starvation protein B PF550_16080 PF02785 Biotin carboxylase C-terminal domain PF550_16080 PF00289 Biotin carboxylase, N-terminal domain PF550_16080 PF00364 Biotin-requiring enzyme PF550_16080 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain PF550_16090 PF00441 Acyl-CoA dehydrogenase, C-terminal domain PF550_16090 PF02770 Acyl-CoA dehydrogenase, middle domain PF550_16090 PF02771 Acyl-CoA dehydrogenase, N-terminal domain PF550_16095 PF01039 Carboxyl transferase domain PF550_16110 PF00440 Bacterial regulatory proteins, tetR family PF550_16110 PF17932 Tetracyclin repressor-like, C-terminal domain PF550_16115 PF00441 Acyl-CoA dehydrogenase, C-terminal domain PF550_16115 PF02771 Acyl-CoA dehydrogenase, N-terminal domain PF550_16115 PF02770 Acyl-CoA dehydrogenase, middle domain PF550_16160 PF01066 CDP-alcohol phosphatidyltransferase PF550_16165 PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ PF550_16185 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain PF550_16185 PF00056 lactate/malate dehydrogenase, NAD binding domain PF550_16195 PF01551 Peptidase family M23 PF550_16195 PF01464 Transglycosylase SLT domain PF550_16195 PF10145 Phage-related minor tail protein PF550_16200 PF04055 Radical SAM superfamily PF550_16200 PF01938 TRAM domain PF550_16200 PF00919 Uncharacterized protein family UPF0004 PF550_16205 PF02562 PhoH-like protein PF550_16210 PF02130 Uncharacterized protein family UPF0054 PF550_16235 PF03358 NADPH-dependent FMN reductase PF550_16240 PF03631 Virulence factor BrkB PF550_16245 PF00892 EamA-like transporter family PF550_16250 PF12833 Helix-turn-helix domain PF550_16255 PF01557 Fumarylacetoacetate (FAA) hydrolase family PF550_16300 PF17876 Cold shock domain PF550_16300 PF08461 Ribonuclease R winged-helix domain PF550_16300 PF00575 S1 RNA binding domain PF550_16300 PF00773 RNB domain PF550_16300 PF08206 Ribonuclease B OB domain PF550_16305 PF01432 Peptidase family M3 PF550_16310 PF09526 Probable metal-binding protein (DUF2387) PF550_16340 PF03937 Flavinator of succinate dehydrogenase PF550_16345 PF00441 Acyl-CoA dehydrogenase, C-terminal domain PF550_16345 PF02770 Acyl-CoA dehydrogenase, middle domain PF550_16345 PF02771 Acyl-CoA dehydrogenase, N-terminal domain PF550_16350 PF00743 Flavin-binding monooxygenase-like PF550_16355 PF01196 Ribosomal protein L17 PF550_16360 PF01000 RNA polymerase Rpb3/RpoA insert domain PF550_16360 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain PF550_16360 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain PF550_16365 PF00163 Ribosomal protein S4/S9 N-terminal domain PF550_16365 PF01479 S4 domain PF550_16370 PF00411 Ribosomal protein S11 PF550_16375 PF00416 Ribosomal protein S13/S18 PF550_16380 PF00444 Ribosomal protein L36 PF550_16385 PF00344 SecY translocase PF550_16390 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A PF550_16395 PF00327 Ribosomal protein L30p/L7e PF550_16400 PF03719 Ribosomal protein S5, C-terminal domain PF550_16400 PF00333 Ribosomal protein S5, N-terminal domain PF550_16405 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast PF550_16410 PF00347 Ribosomal protein L6 PF550_16415 PF00410 Ribosomal protein S8 PF550_16420 PF00253 Ribosomal protein S14p/S29e PF550_16425 PF00281 Ribosomal protein L5 PF550_16425 PF00673 ribosomal L5P family C-terminus PF550_16430 PF00467 KOW motif PF550_16430 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 PF550_16435 PF00238 Ribosomal protein L14p/L23e PF550_16440 PF00366 Ribosomal protein S17 PF550_16445 PF00831 Ribosomal L29 protein PF550_16450 PF00252 Ribosomal protein L16p/L10e PF550_16460 PF00237 Ribosomal protein L22p/L17e PF550_16465 PF00203 Ribosomal protein S19 PF550_16470 PF03947 Ribosomal Proteins L2, C-terminal domain PF550_16470 PF00181 Ribosomal Proteins L2, RNA binding domain PF550_16475 PF00276 Ribosomal protein L23 PF550_16480 PF00573 Ribosomal protein L4/L1 family PF550_16485 PF00297 Ribosomal protein L3 PF550_16490 PF00338 Ribosomal protein S10p/S20e PF550_16495 PF00117 Glutamine amidotransferase class-I PF550_16500 PF01053 Cys/Met metabolism PLP-dependent enzyme PF550_16505 PF05872 Bacterial protein of unknown function (DUF853) PF550_16515 PF00970 Oxidoreductase FAD-binding domain PF550_16515 PF00042 Globin PF550_16515 PF00175 Oxidoreductase NAD-binding domain PF550_16520 PF02082 Transcriptional regulator PF550_16525 PF01926 50S ribosome-binding GTPase PF550_16535 PF00375 Sodium:dicarboxylate symporter family PF550_16545 PF01553 Acyltransferase PF550_16560 PF00270 DEAD/DEAH box helicase PF550_16560 PF17191 RecG wedge domain PF550_16560 PF00271 Helicase conserved C-terminal domain PF550_16565 PF00156 Phosphoribosyl transferase domain PF550_16570 PF00293 NUDIX domain PF550_16575 PF03641 Possible lysine decarboxylase PF550_16580 PF01544 CorA-like Mg2+ transporter protein PF550_16590 PF05494 MlaC protein PF550_16600 PF02405 Permease MlaE PF550_16605 PF00005 ABC transporter PF550_16615 PF03880 DbpA RNA binding domain PF550_16615 PF00270 DEAD/DEAH box helicase PF550_16615 PF12343 Cold shock protein DEAD box A PF550_16615 PF00271 Helicase conserved C-terminal domain PF550_16620 PF00459 Inositol monophosphatase family PF550_16625 PF13292 1-deoxy-D-xylulose-5-phosphate synthase PF550_16625 PF02779 Transketolase, pyrimidine binding domain PF550_16625 PF02780 Transketolase, C-terminal domain PF550_16630 PF00925 GTP cyclohydrolase II PF550_16635 PF01218 Coproporphyrinogen III oxidase PF550_16640 PF18317 Shikimate 5'-dehydrogenase C-terminal domain PF550_16640 PF08501 Shikimate dehydrogenase substrate binding domain PF550_16640 PF01488 Shikimate / quinate 5-dehydrogenase PF550_16650 PF00441 Acyl-CoA dehydrogenase, C-terminal domain PF550_16650 PF12806 Acetyl-CoA dehydrogenase C-terminal like PF550_16650 PF02770 Acyl-CoA dehydrogenase, middle domain PF550_16650 PF02771 Acyl-CoA dehydrogenase, N-terminal domain PF550_16660 PF04024 PspC domain PF550_16665 PF00571 CBS domain PF550_16680 PF07690 Major Facilitator Superfamily PF550_16685 PF02091 Glycyl-tRNA synthetase alpha subunit PF550_16690 PF05746 DALR anticodon binding domain PF550_16690 PF02092 Glycyl-tRNA synthetase beta subunit PF550_16700 PF13737 Transposase DDE domain PF550_16720 PF00892 EamA-like transporter family PF550_16725 PF03466 LysR substrate binding domain PF550_16725 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family PF550_16740 PF00082 Subtilase family PF550_16740 PF05922 Peptidase inhibitor I9 PF550_16755 PF04952 Succinylglutamate desuccinylase / Aspartoacylase family PF550_16760 PF04996 Succinylarginine dihydrolase PF550_16765 PF00171 Aldehyde dehydrogenase family PF550_16770 PF04958 Arginine N-succinyltransferase beta subunit PF550_16775 PF00202 Aminotransferase class-III PF550_16780 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase PF550_16780 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain PF550_16785 PF00324 Amino acid permease PF550_16795 PF08241 Methyltransferase domain PF550_16815 PF13614 AAA domain PF550_16820 PF01594 AI-2E family transporter PF550_16825 PF00080 Copper/zinc superoxide dismutase (SODC) PF550_16830 PF12805 FUSC-like inner membrane protein yccS PF550_16835 PF07690 Major Facilitator Superfamily PF550_16845 PF02525 Flavodoxin-like fold PF550_16850 PF03992 Antibiotic biosynthesis monooxygenase PF550_16865 PF02913 FAD linked oxidases, C-terminal domain PF550_16865 PF01565 FAD binding domain PF550_16870 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain PF550_16870 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain PF550_16875 PF00892 EamA-like transporter family PF550_16880 PF00892 EamA-like transporter family PF550_16890 PF01925 Sulfite exporter TauE/SafE PF550_16895 PF09157 Pseudouridine synthase II TruB, C-terminal PF550_16895 PF01509 TruB family pseudouridylate synthase (N terminal domain) PF550_16895 PF16198 tRNA pseudouridylate synthase B C-terminal domain PF550_16900 PF03280 Proteobacterial lipase chaperone protein PF550_16905 PF00561 alpha/beta hydrolase fold PF550_16910 PF01245 Ribosomal protein L19 PF550_16915 PF01746 tRNA (Guanine-1)-methyltransferase PF550_16920 PF05239 PRC-barrel domain PF550_16920 PF01782 RimM N-terminal domain PF550_16925 PF00886 Ribosomal protein S16 PF550_16965 PF02401 LytB protein PF550_16970 PF00625 Guanylate kinase PF550_16975 PF01192 RNA polymerase Rpb6 PF550_16985 PF04607 Region found in RelA / SpoT proteins PF550_16985 PF13291 ACT domain PF550_16985 PF02824 TGS domain PF550_16990 PF01042 Endoribonuclease L-PSP PF550_16995 PF04324 BFD-like [2Fe-2S] binding domain PF550_17000 PF00210 Ferritin-like domain PF550_17005 PF11846 Virulence factor membrane-bound polymerase, C-terminal PF550_17005 PF04932 O-Antigen ligase PF550_17005 PF15864 Protein glycosylation ligase PF550_17015 PF07963 Prokaryotic N-terminal methylation motif PF550_17015 PF00114 Pilin (bacterial filament) PF550_17025 PF04536 TPM domain PF550_17030 PF04011 LemA family PF550_17040 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster PF550_17040 PF07992 Pyridine nucleotide-disulphide oxidoreductase PF550_17045 PF01493 GXGXG motif PF550_17045 PF00310 Glutamine amidotransferases class-II PF550_17045 PF01645 Conserved region in glutamate synthase PF550_17045 PF04898 Glutamate synthase central domain PF550_17055 PF01761 3-dehydroquinate synthase PF550_17060 PF01202 Shikimate kinase PF550_17065 PF11741 AMIN domain PF550_17065 PF00263 Bacterial type II and III secretion system protein PF550_17065 PF03958 Bacterial type II/III secretion system short domain PF550_17065 PF07660 Secretin and TonB N terminus short domain PF550_17075 PF04350 Pilus assembly protein, PilO PF550_17080 PF05137 Fimbrial assembly protein (PilN) PF550_17085 PF11104 Type IV pilus assembly protein PilM; PF550_17090 PF00912 Transglycosylase PF550_17090 PF00905 Penicillin binding protein transpeptidase domain PF550_17090 PF17092 Penicillin-binding protein OB-like domain PF550_17095 PF13847 Methyltransferase domain PF550_17105 PF00953 Glycosyl transferase family 4 PF550_17110 PF01225 Mur ligase family, catalytic domain PF550_17110 PF02875 Mur ligase family, glutamate ligase domain PF550_17110 PF08245 Mur ligase middle domain PF550_17115 PF02875 Mur ligase family, glutamate ligase domain PF550_17115 PF08245 Mur ligase middle domain PF550_17115 PF01225 Mur ligase family, catalytic domain PF550_17120 PF03717 Penicillin-binding Protein dimerisation domain PF550_17120 PF00905 Penicillin binding protein transpeptidase domain PF550_17130 PF01795 MraW methylase family PF550_17145 PF00749 tRNA synthetases class I (E and Q), catalytic domain PF550_17160 PF00324 Amino acid permease PF550_17190 PF01545 Cation efflux family PF550_17195 PF00873 AcrB/AcrD/AcrF family PF550_17200 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion PF550_17200 PF00529 HlyD membrane-fusion protein of T1SS PF550_17225 PF00005 ABC transporter PF550_17225 PF12848 ABC transporter PF550_17230 PF01053 Cys/Met metabolism PLP-dependent enzyme PF550_17235 PF00106 short chain dehydrogenase PF550_17240 PF01740 STAS domain PF550_17240 PF00916 Sulfate permease family PF550_17245 PF17674 HHH domain PF550_17245 PF00575 S1 RNA binding domain PF550_17245 PF09371 Tex-like protein N-terminal domain PF550_17245 PF16921 Tex protein YqgF-like domain PF550_17250 PF00072 Response regulator receiver domain PF550_17250 PF00486 Transcriptional regulatory protein, C terminal PF550_17255 PF00512 His Kinase A (phospho-acceptor) domain PF550_17255 PF00672 HAMP domain PF550_17255 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PF550_17265 PF02550 Acetyl-CoA hydrolase/transferase N-terminal domain PF550_17265 PF13336 Acetyl-CoA hydrolase/transferase C-terminal domain PF550_17270 PF00583 Acetyltransferase (GNAT) family PF550_17290 PF00475 Imidazoleglycerol-phosphate dehydratase PF550_17295 PF00117 Glutamine amidotransferase class-I PF550_17310 PF00977 Histidine biosynthesis protein PF550_17345 PF01636 Phosphotransferase enzyme family PF550_17350 PF00977 Histidine biosynthesis protein PF550_17365 PF00230 Major intrinsic protein PF550_17390 PF02705 K+ potassium transporter PF550_17405 PF02525 Flavodoxin-like fold PF550_17410 PF01638 HxlR-like helix-turn-helix PF550_17435 PF02311 AraC-like ligand binding domain PF550_17435 PF12833 Helix-turn-helix domain PF550_17440 PF00248 Aldo/keto reductase family PF550_17460 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family PF550_17460 PF03466 LysR substrate binding domain PF550_17465 PF07690 Major Facilitator Superfamily PF550_17485 PF01593 Flavin containing amine oxidoreductase PF550_17495 PF02678 Pirin PF550_17495 PF05726 Pirin C-terminal cupin domain PF550_17500 PF00857 Isochorismatase family PF550_17505 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family PF550_17510 PF00171 Aldehyde dehydrogenase family PF550_17515 PF00202 Aminotransferase class-III PF550_17520 PF00392 Bacterial regulatory proteins, gntR family PF550_17520 PF00155 Aminotransferase class I and II PF550_17525 PF00324 Amino acid permease PF550_17535 PF03591 AzlC protein PF550_17545 PF00436 Single-strand binding protein family PF550_17550 PF07690 Major Facilitator Superfamily PF550_17560 PF02581 Thiamine monophosphate synthase PF550_17560 PF03070 TENA/THI-4/PQQC family PF550_17560 PF08543 Phosphomethylpyrimidine kinase PF550_17565 PF06942 GlpM protein PF550_17575 PF00107 Zinc-binding dehydrogenase PF550_17575 PF08240 Alcohol dehydrogenase GroES-like domain PF550_17580 PF16925 Tetracyclin repressor-like, C-terminal domain PF550_17580 PF00440 Bacterial regulatory proteins, tetR family PF550_17585 PF17755 UvrA DNA-binding domain PF550_17585 PF17760 UvrA interaction domain PF550_17590 PF00990 Diguanylate cyclase, GGDEF domain PF550_17600 PF02028 BCCT, betaine/carnitine/choline family transporter PF550_17610 PF00474 Sodium:solute symporter family PF550_17615 PF04341 Protein of unknown function, DUF485 PF550_17620 PF01627 Hpt domain PF550_17620 PF00072 Response regulator receiver domain PF550_17620 PF00512 His Kinase A (phospho-acceptor) domain PF550_17620 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PF550_17620 PF00672 HAMP domain PF550_17630 PF00072 Response regulator receiver domain PF550_17630 PF00196 Bacterial regulatory proteins, luxR family PF550_17635 PF03358 NADPH-dependent FMN reductase PF550_17640 PF00296 Luciferase-like monooxygenase PF550_17645 PF01037 Lrp/AsnC ligand binding domain PF550_17650 PF00857 Isochorismatase family PF550_17655 PF13193 AMP-binding enzyme C-terminal domain PF550_17655 PF16177 Acetyl-coenzyme A synthetase N-terminus PF550_17655 PF00501 AMP-binding enzyme PF550_17665 PF00924 Mechanosensitive ion channel PF550_17670 PF04452 RNA methyltransferase PF550_17675 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) PF550_17680 PF00724 NADH:flavin oxidoreductase / NADH oxidase family PF550_17705 PF17768 RecJ OB domain PF550_17705 PF02272 DHHA1 domain PF550_17705 PF01368 DHH family PF550_17710 PF01243 Pyridoxamine 5'-phosphate oxidase PF550_17710 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region PF550_17715 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III PF550_17715 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I PF550_17715 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II PF550_17715 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain PF550_17720 PF00478 IMP dehydrogenase / GMP reductase domain PF550_17720 PF00571 CBS domain PF550_17725 PF03692 Putative zinc- or iron-chelating domain PF550_17730 PF00258 Flavodoxin PF550_17730 PF01613 Flavin reductase like domain PF550_17735 PF00593 TonB dependent receptor PF550_17735 PF07715 TonB-dependent Receptor Plug Domain PF550_17740 PF01169 Uncharacterized protein family UPF0016 PF550_17750 PF02817 e3 binding domain PF550_17750 PF00364 Biotin-requiring enzyme PF550_17750 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) PF550_17755 PF00456 Transketolase, thiamine diphosphate binding domain PF550_17755 PF17831 Pyruvate dehydrogenase E1 component middle domain PF550_17760 PF01551 Peptidase family M23 PF550_17770 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase PF550_17775 PF00091 Tubulin/FtsZ family, GTPase domain PF550_17775 PF12327 FtsZ family, C-terminal domain PF550_17780 PF02491 SHS2 domain inserted in FTSA PF550_17785 PF08478 POTRA domain, FtsQ-type PF550_17785 PF03799 Cell division protein FtsQ PF550_17790 PF01820 D-ala D-ala ligase N-terminus PF550_17790 PF07478 D-ala D-ala ligase C-terminus PF550_17795 PF08245 Mur ligase middle domain PF550_17795 PF02875 Mur ligase family, glutamate ligase domain PF550_17795 PF01225 Mur ligase family, catalytic domain PF550_17800 PF03033 Glycosyltransferase family 28 N-terminal domain PF550_17800 PF04101 Glycosyltransferase family 28 C-terminal domain PF550_17805 PF02951 Prokaryotic glutathione synthetase, N-terminal domain PF550_17805 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain PF550_17815 PF07715 TonB-dependent Receptor Plug Domain PF550_17815 PF00593 TonB dependent receptor PF550_17825 PF00156 Phosphoribosyl transferase domain PF550_17830 PF03372 Endonuclease/Exonuclease/phosphatase family PF550_17835 PF03960 ArsC family PF550_17845 PF07859 alpha/beta hydrolase fold PF550_17850 PF07694 5TMR of 5TMR-LYT PF550_17850 PF00990 Diguanylate cyclase, GGDEF domain PF550_17855 PF11412 Disulphide bond corrector protein DsbC PF550_17855 PF02683 Cytochrome C biogenesis protein transmembrane region PF550_17885 PF00576 HIUase/Transthyretin family PF550_17890 PF00860 Permease family PF550_17900 PF01494 FAD binding domain PF550_17905 PF03561 Allantoicase repeat PF550_17910 PF04115 Ureidoglycolate lyase PF550_17915 PF00204 DNA gyrase B PF550_17915 PF00986 DNA gyrase B subunit, carboxyl terminus PF550_17915 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PF550_17915 PF01751 Toprim domain PF550_17920 PF05728 Uncharacterised protein family (UPF0227) PF550_17935 PF00182 Chitinase class I PF550_17940 PF13296 Putative type VI secretion system Rhs element Vgr PF550_17940 PF04717 Type VI secretion system, phage-baseplate injector PF550_17940 PF10106 Uncharacterized protein conserved in bacteria (DUF2345) PF550_17945 PF02600 Disulfide bond formation protein DsbB PF550_17950 PF04262 Glutamate-cysteine ligase PF550_17965 PF04286 Protein of unknown function (DUF445) PF550_17970 PF00155 Aminotransferase class I and II PF550_17975 PF01554 MatE PF550_17980 PF00106 short chain dehydrogenase PF550_17990 PF00486 Transcriptional regulatory protein, C terminal PF550_17990 PF00072 Response regulator receiver domain PF550_17995 PF00989 PAS fold PF550_17995 PF00512 His Kinase A (phospho-acceptor) domain PF550_17995 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PF550_17995 PF11808 Phosphate regulon sensor protein PhoR PF550_18005 PF02666 Phosphatidylserine decarboxylase PF550_18010 PF00581 Rhodanese-like domain PF550_18015 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain PF550_18015 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family PF550_18020 PF02580 D-Tyr-tRNA(Tyr) deacylase PF550_18045 PF00925 GTP cyclohydrolase II PF550_18045 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase PF550_18050 PF00885 6,7-dimethyl-8-ribityllumazine synthase PF550_18055 PF01029 NusB family PF550_18060 PF02769 AIR synthase related protein, C-terminal domain PF550_18060 PF00586 AIR synthase related protein, N-terminal domain PF550_18065 PF04608 Phosphatidylglycerophosphatase A PF550_18070 PF12804 MobA-like NTP transferase domain PF550_18070 PF14602 Hexapeptide repeat of succinyl-transferase PF550_18070 PF00132 Bacterial transferase hexapeptide (six repeats) PF550_18075 PF01380 SIS domain PF550_18080 PF01177 Asp/Glu/Hydantoin racemase PF550_18095 PF00491 Arginase family PF550_18100 PF01979 Amidohydrolase family PF550_18105 PF00324 Amino acid permease PF550_18110 PF00221 Aromatic amino acid lyase PF550_18115 PF17391 Urocanase N-terminal domain PF550_18115 PF17392 Urocanase C-terminal domain PF550_18115 PF01175 Urocanase Rossmann-like domain PF550_18120 PF13610 DDE domain PF550_18130 PF01042 Endoribonuclease L-PSP PF550_18135 PF01168 Alanine racemase, N-terminal domain PF550_18135 PF00842 Alanine racemase, C-terminal domain PF550_18140 PF01266 FAD dependent oxidoreductase PF550_18145 PF01037 Lrp/AsnC ligand binding domain PF550_18155 PF00593 TonB dependent receptor PF550_18155 PF07715 TonB-dependent Receptor Plug Domain PF550_18170 PF00849 RNA pseudouridylate synthase PF550_18200 PF04717 Type VI secretion system, phage-baseplate injector PF550_18200 PF10106 Uncharacterized protein conserved in bacteria (DUF2345) PF550_18200 PF13296 Putative type VI secretion system Rhs element Vgr PF550_18210 PF00109 Beta-ketoacyl synthase, N-terminal domain PF550_18210 PF02801 Beta-ketoacyl synthase, C-terminal domain PF550_18240 PF00330 Aconitase family (aconitate hydratase) PF550_18240 PF00694 Aconitase C-terminal domain PF550_18245 PF00285 Citrate synthase, C-terminal domain PF550_18255 PF07729 FCD domain PF550_18255 PF00392 Bacterial regulatory proteins, gntR family PF550_18265 PF00155 Aminotransferase class I and II PF550_18270 PF09330 D-lactate dehydrogenase, membrane binding PF550_18270 PF01565 FAD binding domain PF550_18275 PF01070 FMN-dependent dehydrogenase PF550_18280 PF00392 Bacterial regulatory proteins, gntR family PF550_18280 PF07729 FCD domain PF550_18285 PF02652 L-lactate permease PF550_18290 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III PF550_18290 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain PF550_18290 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II PF550_18290 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I PF550_18295 PF16363 GDP-mannose 4,6 dehydratase PF550_18300 PF00342 Phosphoglucose isomerase PF550_18305 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain PF550_18305 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain PF550_18305 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain PF550_18310 PF00483 Nucleotidyl transferase PF550_18315 PF02397 Bacterial sugar transferase PF550_18320 PF00535 Glycosyl transferase family 2 PF550_18325 PF00534 Glycosyl transferases group 1 PF550_18340 PF00534 Glycosyl transferases group 1 PF550_18340 PF13439 Glycosyltransferase Family 4 PF550_18345 PF00132 Bacterial transferase hexapeptide (six repeats) PF550_18345 PF12464 Maltose acetyltransferase PF550_18345 PF14602 Hexapeptide repeat of succinyl-transferase PF550_18355 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family PF550_18360 PF00132 Bacterial transferase hexapeptide (six repeats) PF550_18365 PF02894 Oxidoreductase family, C-terminal alpha/beta domain PF550_18365 PF01408 Oxidoreductase family, NAD-binding Rossmann fold PF550_18370 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain PF550_18370 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain PF550_18370 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain PF550_18375 PF02563 Polysaccharide biosynthesis/export protein PF550_18375 PF10531 SLBB domain PF550_18375 PF18412 Outer-membrane lipoprotein Wza C-terminal domain PF550_18380 PF01451 Low molecular weight phosphotyrosine protein phosphatase PF550_18385 PF02706 Chain length determinant protein PF550_18385 PF13614 AAA domain PF550_18385 PF13807 G-rich domain on putative tyrosine kinase PF550_18390 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase PF550_18390 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase PF550_18395 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase PF550_18395 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase PF550_18400 PF03023 Lipid II flippase MurJ PF550_18405 PF01510 N-acetylmuramoyl-L-alanine amidase PF550_18410 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain PF550_18410 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain PF550_18430 PF01138 3' exoribonuclease family, domain 1 PF550_18430 PF03725 3' exoribonuclease family, domain 2 PF550_18435 PF00487 Fatty acid desaturase PF550_18440 PF00175 Oxidoreductase NAD-binding domain PF550_18445 PF00440 Bacterial regulatory proteins, tetR family PF550_18450 PF00440 Bacterial regulatory proteins, tetR family PF550_18450 PF08360 QacR-like protein, C-terminal region PF550_18455 PF01323 DSBA-like thioredoxin domain PF550_18465 PF13419 Haloacid dehalogenase-like hydrolase PF550_18470 PF00106 short chain dehydrogenase PF550_18485 PF00696 Amino acid kinase family PF550_18485 PF00583 Acetyltransferase (GNAT) family PF550_18490 PF09084 NMT1/THI5 like PF550_18495 PF09084 NMT1/THI5 like PF550_18500 PF00296 Luciferase-like monooxygenase PF550_18505 PF00528 Binding-protein-dependent transport system inner membrane component PF550_18510 PF00005 ABC transporter PF550_18515 PF00440 Bacterial regulatory proteins, tetR family PF550_18515 PF08362 YcdC-like protein, C-terminal region PF550_18520 PF01048 Phosphorylase superfamily PF550_18530 PF06574 FAD synthetase PF550_18530 PF01687 Riboflavin kinase PF550_18535 PF00133 tRNA synthetases class I (I, L, M and V) PF550_18535 PF06827 Zinc finger found in FPG and IleRS PF550_18535 PF08264 Anticodon-binding domain of tRNA PF550_18540 PF01252 Signal peptidase (SPase) II PF550_18545 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase PF550_18585 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD PF550_18590 PF07859 alpha/beta hydrolase fold PF550_18610 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family PF550_18610 PF03466 LysR substrate binding domain PF550_18615 PF01025 GrpE PF550_18620 PF00012 Hsp70 protein PF550_18640 PF13406 Transglycosylase SLT domain PF550_18645 PF02222 ATP-grasp domain PF550_18645 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain PF550_18650 PF00731 AIR carboxylase PF550_18660 PF01225 Mur ligase family, catalytic domain PF550_18660 PF02875 Mur ligase family, glutamate ligase domain PF550_18660 PF08245 Mur ligase middle domain PF550_18670 PF01569 PAP2 superfamily PF550_18675 PF03741 Integral membrane protein TerC family PF550_18685 PF03738 Glutathionylspermidine synthase preATP-grasp PF550_18695 PF01979 Amidohydrolase family PF550_18700 PF00156 Phosphoribosyl transferase domain PF550_18710 PF10411 Disulfide bond isomerase protein N-terminus PF550_18710 PF13098 Thioredoxin-like domain PF550_18715 PF01545 Cation efflux family PF550_18715 PF16916 Dimerisation domain of Zinc Transporter PF550_18720 PF02583 Metal-sensitive transcriptional repressor PF550_18725 PF01926 50S ribosome-binding GTPase PF550_18725 PF12631 MnmE helical domain PF550_18725 PF10396 GTP-binding protein TrmE N-terminus PF550_18730 PF02096 60Kd inner membrane protein PF550_18730 PF14849 YidC periplasmic domain PF550_18735 PF01809 Putative membrane protein insertion efficiency factor PF550_18740 PF00825 Ribonuclease P PF550_18745 PF00468 Ribosomal protein L34 PF550_18760 PF00877 NlpC/P60 family PF550_18865 PF00005 ABC transporter PF550_18865 PF09383 NIL domain PF550_18870 PF02195 ParB-like nuclease domain PF550_19000 PF00929 Exonuclease PF550_19085 PF00692 dUTPase PF550_19110 PF00268 Ribonucleotide reductase, small chain PF550_19115 PF03477 ATP cone domain PF550_19115 PF02867 Ribonucleotide reductase, barrel domain PF550_19115 PF00317 Ribonucleotide reductase, all-alpha domain PF550_19140 PF13476 AAA domain PF550_19185 PF00154 recA bacterial DNA recombination protein PF550_19205 PF07733 Bacterial DNA polymerase III alpha NTPase domain PF550_19205 PF17657 Bacterial DNA polymerase III alpha subunit finger domain PF550_19205 PF14579 Helix-hairpin-helix motif PF550_19205 PF02811 PHP domain PF550_19240 PF02899 Phage integrase, N-terminal SAM-like domain PF550_19240 PF00589 Phage integrase family PF550_19265 PF00625 Guanylate kinase PF550_19305 PF08275 DNA primase catalytic core, N-terminal domain PF550_19305 PF10410 DnaB-helicase binding domain of primase PF550_19305 PF01807 CHC2 zinc finger