locus-tag class description PF553_00005 IPR003593 AAA+ ATPase domain PF553_00005 IPR001957 Chromosomal replication control, initiator DnaA PF553_00005 IPR020591 Chromosomal replication control, initiator DnaA-like PF553_00005 IPR018312 Chromosomal replication control, initiator DnaA, conserved site PF553_00005 IPR013317 Chromosomal replication initiator protein DnaA PF553_00005 IPR013159 Chromosomal replication initiator, DnaA C-terminal PF553_00005 IPR024633 DnaA N-terminal domain PF553_00005 IPR038454 DnaA, N-terminal domain superfamily PF553_00005 IPR027417 P-loop containing nucleoside triphosphate hydrolase PF553_00005 IPR010921 Trp repressor/replication initiator PF553_00010 IPR022634 DNA polymerase III, beta sliding clamp, N-terminal PF553_00010 IPR022637 DNA polymerase III, beta sliding clamp, central PF553_00010 IPR022635 DNA polymerase III, beta sliding clamp, C-terminal PF553_00010 IPR001001 DNA polymerase III, beta sliding clamp PF553_00015 IPR001238 DNA-binding, RecF PF553_00015 IPR027417 P-loop containing nucleoside triphosphate hydrolase PF553_00015 IPR003395 RecF/RecN/SMC, N-terminal PF553_00015 IPR042174 DNA-binding RecF, domain 2 PF553_00020 IPR034160 DNA gyrase subunit B, TOPRIM domain PF553_00020 IPR006171 TOPRIM domain PF553_00020 IPR018522 DNA topoisomerase, type IIA, conserved site PF553_00020 IPR013759 DNA topoisomerase, type IIA, subunit B, C-terminal PF553_00020 IPR013760 DNA topoisomerase, type IIA-like domain superfamily PF553_00020 IPR001241 DNA topoisomerase, type IIA PF553_00020 IPR013506 DNA topoisomerase, type IIA, subunit B, domain 2 PF553_00020 IPR020568 Ribosomal protein S5 domain 2-type fold PF553_00020 IPR036890 Histidine kinase/HSP90-like ATPase superfamily PF553_00020 IPR003594 Histidine kinase/HSP90-like ATPase PF553_00020 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup PF553_00020 IPR041423 DNA gyrase subunit B insert domain PF553_00020 IPR011557 DNA gyrase, subunit B PF553_00020 IPR002288 DNA gyrase B subunit, C-terminal PF553_00030 IPR032818 DedA family PF553_00030 IPR032816 SNARE associated Golgi protein PF553_00035 IPR017871 ABC transporter, conserved site PF553_00035 IPR003439 ABC transporter-like PF553_00035 IPR032781 ABC-transporter extension domain PF553_00035 IPR027417 P-loop containing nucleoside triphosphate hydrolase PF553_00035 IPR003593 AAA+ ATPase domain PF553_00040 IPR038404 TRAP transporter solute receptor DctP superfamily PF553_00045 IPR038404 TRAP transporter solute receptor DctP superfamily PF553_00050 IPR038404 TRAP transporter solute receptor DctP superfamily PF553_00055 IPR023063 FeS cluster insertion protein ErpA PF553_00055 IPR000361 FeS cluster biogenesis PF553_00055 IPR016092 FeS cluster insertion protein PF553_00055 IPR017870 FeS cluster insertion, C-terminal, conserved site PF553_00055 IPR035903 HesB-like domain superfamily PF553_00060 IPR029058 Alpha/Beta hydrolase fold PF553_00060 IPR000073 Alpha/beta hydrolase fold-1 PF553_00060 IPR000639 Epoxide hydrolase-like PF553_00065 IPR005338 Anhydro-N-acetylmuramic acid kinase PF553_00070 IPR002942 RNA-binding S4 domain PF553_00070 IPR036986 RNA-binding S4 domain superfamily PF553_00070 IPR024088 Tyrosine-tRNA ligase, bacterial-type PF553_00070 IPR024108 Tyrosine-tRNA ligase, bacterial-type, type 2 PF553_00070 IPR002307 Tyrosine-tRNA ligase PF553_00070 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold PF553_00070 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site PF553_00070 IPR002305 Aminoacyl-tRNA synthetase, class Ic PF553_00110 IPR000175 Sodium:neurotransmitter symporter PF553_00110 IPR037272 Sodium:neurotransmitter symporter superfamily PF553_00120 IPR023267 RNA (C5-cytosine) methyltransferase PF553_00120 IPR018314 Bacterial Fmu (Sun)/eukaryotic nucleolar NOL1/Nop2p, conserved site PF553_00120 IPR001678 SAM-dependent methyltransferase RsmB/NOP2-type PF553_00120 IPR035926 NusB-like superfamily PF553_00120 IPR006027 NusB/RsmB/TIM44 PF553_00120 IPR004573 rRNA small subunit methyltransferase B PF553_00120 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase PF553_00125 IPR041711 Methionyl-tRNA formyltransferase, N-terminal domain PF553_00125 IPR011034 Formyl transferase-like, C-terminal domain superfamily PF553_00125 IPR036477 Formyl transferase, N-terminal domain superfamily PF553_00125 IPR037022 Formyl transferase, C-terminal domain superfamily PF553_00125 IPR005793 Formyl transferase, C-terminal PF553_00125 IPR002376 Formyl transferase, N-terminal PF553_00125 IPR005794 Methionyl-tRNA formyltransferase PF553_00130 IPR004404 Dihydroxy-acid dehydratase PF553_00130 IPR037237 IlvD/EDD, N-terminal domain PF553_00130 IPR020558 Dihydroxy-acid/6-phosphogluconate dehydratase, conserved site PF553_00130 IPR042096 Dihydroxy-acid dehydratase, C-terminal PF553_00130 IPR000581 Dihydroxy-acid/6-phosphogluconate dehydratase PF553_00145 IPR000847 Transcription regulator HTH, LysR PF553_00145 IPR036388 Winged helix-like DNA-binding domain superfamily PF553_00145 IPR036390 Winged helix DNA-binding domain superfamily PF553_00145 IPR005119 LysR, substrate-binding PF553_00150 IPR019918 Pyrimidine permease RutG, predicted PF553_00150 IPR006042 Xanthine/uracil permease PF553_00150 IPR006043 Xanthine/uracil/vitamin C permease PF553_00155 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain superfamily PF553_00155 IPR033129 Phosphoenolpyruvate carboxylase, His active site PF553_00155 IPR018129 Phosphoenolpyruvate carboxylase, Lys active site PF553_00155 IPR022805 Phosphoenolpyruvate carboxylase, bacterial/plant-type PF553_00155 IPR021135 Phosphoenolpyruvate carboxylase PF553_00165 IPR032874 DDE domain PF553_00165 IPR001584 Integrase, catalytic core PF553_00165 IPR012337 Ribonuclease H-like superfamily PF553_00165 IPR036397 Ribonuclease H superfamily PF553_00170 IPR019646 Aminoglycoside-2''-adenylyltransferase PF553_00175 IPR002575 Aminoglycoside phosphotransferase PF553_00175 IPR024165 Aminoglycoside 3-phosphotransferase PF553_00175 IPR011009 Protein kinase-like domain superfamily PF553_00180 IPR003593 AAA+ ATPase domain PF553_00180 IPR030679 ABC-type amino acid transport system, ATPase component, HisP-type PF553_00180 IPR003439 ABC transporter-like PF553_00180 IPR027417 P-loop containing nucleoside triphosphate hydrolase PF553_00180 IPR017871 ABC transporter, conserved site PF553_00185 IPR001584 Integrase, catalytic core PF553_00185 IPR012337 Ribonuclease H-like superfamily PF553_00185 IPR036397 Ribonuclease H superfamily PF553_00185 IPR032874 DDE domain PF553_00200 IPR000524 Transcription regulator HTH, GntR PF553_00200 IPR010248 Histidine utilization repressor PF553_00200 IPR036388 Winged helix-like DNA-binding domain superfamily PF553_00200 IPR036390 Winged helix DNA-binding domain superfamily PF553_00200 IPR011663 UbiC transcription regulator-associated PF553_00200 IPR028978 Chorismate pyruvate-lyase/UbiC transcription regulator-associated domain superfamily PF553_00210 IPR011629 Cobalamin (vitamin B12) biosynthesis CobW-like, C-terminal PF553_00210 IPR003495 CobW/HypB/UreG, nucleotide-binding domain PF553_00210 IPR027417 P-loop containing nucleoside triphosphate hydrolase PF553_00220 IPR004841 Amino acid permease/ SLC12A domain PF553_00220 IPR004840 Amino acid permease, conserved site PF553_00230 IPR036249 Thioredoxin-like superfamily PF553_00230 IPR034333 Glutathione S-transferases, class Zeta , N-terminal PF553_00230 IPR034330 Glutathione S-transferases, class Zeta , C-terminal PF553_00230 IPR005955 Glutathione S-transferases, class Zeta PF553_00230 IPR004046 Glutathione S-transferase, C-terminal PF553_00230 IPR004045 Glutathione S-transferase, N-terminal PF553_00230 IPR040079 Glutathione Transferase family PF553_00230 IPR036282 Glutathione S-transferase, C-terminal domain superfamily PF553_00230 IPR010987 Glutathione S-transferase, C-terminal-like PF553_00235 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase PF553_00235 IPR022858 Metallothiol transferase FosB PF553_00235 IPR004360 Glyoxalase/fosfomycin resistance/dioxygenase domain PF553_00235 IPR037523 Vicinal oxygen chelate (VOC) domain PF553_00245 IPR041735 4-hydroxyphenylpyruvate dioxygenase, C-terminal PF553_00245 IPR005956 4-hydroxyphenylpyruvate dioxygenase PF553_00245 IPR004360 Glyoxalase/fosfomycin resistance/dioxygenase domain PF553_00245 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase PF553_00245 IPR041736 4-hydroxyphenylpyruvate dioxygenase, N-terminal PF553_00245 IPR037523 Vicinal oxygen chelate (VOC) domain PF553_00250 IPR007553 Domain of unknown function DUF523 PF553_00260 IPR002657 Bile acid:sodium symporter/arsenical resistance protein Acr3 PF553_00260 IPR004710 Bile acid:sodium symporter PF553_00260 IPR038770 Sodium/solute symporter superfamily PF553_00265 IPR036380 Isochorismatase-like superfamily PF553_00265 IPR000868 Isochorismatase-like PF553_00270 IPR013785 Aldolase-type TIM barrel PF553_00270 IPR005263 4-hydroxy-tetrahydrodipicolinate synthase, DapA PF553_00270 IPR002220 DapA-like PF553_00270 IPR020625 Schiff base-forming aldolase, active site PF553_00270 IPR020624 Schiff base-forming aldolase, conserved site PF553_00280 IPR018236 SAICAR synthetase, conserved site PF553_00280 IPR028923 SAICAR synthetase/ADE2, N-terminal PF553_00280 IPR001636 Phosphoribosylaminoimidazole-succinocarboxamide synthase PF553_00280 IPR033934 Bacterial and archaeal 5-aminoimidazole-4-(N-succinylcarboxamide) ribonucleotide synthase PF553_00290 IPR023271 Aquaporin-like PF553_00290 IPR000292 Formate/nitrite transporter PF553_00295 IPR003593 AAA+ ATPase domain PF553_00295 IPR032423 AAA C-terminal domain PF553_00295 IPR003959 ATPase, AAA-type, core PF553_00295 IPR008921 DNA polymerase III, clamp loader complex, gamma/delta/delta subunit, C-terminal PF553_00295 IPR027417 P-loop containing nucleoside triphosphate hydrolase PF553_00295 IPR021886 MgsA AAA+ ATPase C-terminal PF553_00300 IPR011041 Soluble quinoprotein glucose/sorbosone dehydrogenase PF553_00300 IPR012938 Glucose/Sorbosone dehydrogenase PF553_00300 IPR011042 Six-bladed beta-propeller, TolB-like PF553_00305 IPR005358 Putative zinc- or iron-chelating domain containing protein PF553_00305 IPR008228 Uncharacterised conserved protein UCP006173 PF553_00310 IPR009760 Protein of unknown function DUF1328 PF553_00325 IPR005760 A/G-specific adenine glycosylase MutY PF553_00325 IPR011257 DNA glycosylase PF553_00325 IPR004036 Endonuclease III-like, conserved site-2 PF553_00325 IPR003651 Endonuclease III-like, iron-sulphur cluster loop motif PF553_00325 IPR004035 Endonuclease III, iron-sulphur binding site PF553_00325 IPR003265 HhH-GPD domain PF553_00325 IPR000445 Helix-hairpin-helix motif PF553_00325 IPR023170 Helix-turn-helix, base-excision DNA repair, C-terminal PF553_00325 IPR029119 MutY, C-terminal PF553_00325 IPR015797 NUDIX hydrolase-like domain superfamily PF553_00340 IPR005019 Methyladenine glycosylase PF553_00340 IPR011257 DNA glycosylase PF553_00340 IPR004597 DNA-3-methyladenine glycosylase I PF553_00345 IPR013149 Alcohol dehydrogenase, C-terminal PF553_00345 IPR013154 Alcohol dehydrogenase, N-terminal PF553_00345 IPR002328 Alcohol dehydrogenase, zinc-type, conserved site PF553_00345 IPR029752 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain conserved site 1 PF553_00345 IPR011032 GroES-like superfamily PF553_00345 IPR036291 NAD(P)-binding domain superfamily PF553_00345 IPR020843 Polyketide synthase, enoylreductase domain PF553_00350 IPR015421 Pyridoxal phosphate-dependent transferase, major domain PF553_00350 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 PF553_00350 IPR015424 Pyridoxal phosphate-dependent transferase PF553_00350 IPR000524 Transcription regulator HTH, GntR PF553_00350 IPR004839 Aminotransferase, class I/classII PF553_00350 IPR036388 Winged helix-like DNA-binding domain superfamily PF553_00350 IPR036390 Winged helix DNA-binding domain superfamily PF553_00365 IPR005119 LysR, substrate-binding PF553_00365 IPR000847 Transcription regulator HTH, LysR PF553_00365 IPR036388 Winged helix-like DNA-binding domain superfamily PF553_00365 IPR036390 Winged helix DNA-binding domain superfamily PF553_00370 IPR036812 NADP-dependent oxidoreductase domain superfamily PF553_00370 IPR018170 Aldo/keto reductase, conserved site PF553_00370 IPR020471 Aldo/keto reductase PF553_00370 IPR023210 NADP-dependent oxidoreductase domain PF553_00375 IPR011701 Major facilitator superfamily PF553_00375 IPR020846 Major facilitator superfamily domain PF553_00375 IPR036259 MFS transporter superfamily PF553_00385 IPR022663 Dihydrodipicolinate reductase, C-terminal PF553_00385 IPR000846 Dihydrodipicolinate reductase, N-terminal PF553_00385 IPR022664 Dihydrodipicolinate reductase, conserved site PF553_00385 IPR023940 Dihydrodipicolinate reductase PF553_00385 IPR036291 NAD(P)-binding domain superfamily PF553_00395 IPR012724 Chaperone DnaJ PF553_00395 IPR002939 Chaperone DnaJ, C-terminal PF553_00395 IPR001623 DnaJ domain PF553_00395 IPR018253 DnaJ domain, conserved site PF553_00395 IPR008971 HSP40/DnaJ peptide-binding PF553_00395 IPR001305 Heat shock protein DnaJ, cysteine-rich domain PF553_00395 IPR036410 Heat shock protein DnaJ, cysteine-rich domain superfamily PF553_00395 IPR036869 Chaperone J-domain superfamily PF553_00405 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains PF553_00405 IPR001036 Acriflavin resistance protein PF553_00410 IPR006143 RND efflux pump, membrane fusion protein PF553_00410 IPR032317 RND efflux pump, membrane fusion protein, barrel-sandwich domain PF553_00410 IPR030190 Macrolide export protein MacA PF553_00420 IPR001584 Integrase, catalytic core PF553_00420 IPR012337 Ribonuclease H-like superfamily PF553_00420 IPR036397 Ribonuclease H superfamily PF553_00420 IPR032874 DDE domain PF553_00435 IPR011009 Protein kinase-like domain superfamily PF553_00435 IPR000182 GNAT domain PF553_00435 IPR002575 Aminoglycoside phosphotransferase PF553_00435 IPR016181 Acyl-CoA N-acyltransferase PF553_00440 IPR012337 Ribonuclease H-like superfamily PF553_00440 IPR036397 Ribonuclease H superfamily PF553_00440 IPR032874 DDE domain PF553_00440 IPR001584 Integrase, catalytic core PF553_00450 IPR005844 Alpha-D-phosphohexomutase, alpha/beta/alpha domain I PF553_00450 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III PF553_00450 IPR006352 Phosphoglucosamine mutase, bacterial type PF553_00450 IPR005845 Alpha-D-phosphohexomutase, alpha/beta/alpha domain II PF553_00450 IPR036900 Alpha-D-phosphohexomutase, C-terminal domain superfamily PF553_00450 IPR005841 Alpha-D-phosphohexomutase superfamily PF553_00450 IPR005843 Alpha-D-phosphohexomutase, C-terminal PF553_00450 IPR005846 Alpha-D-phosphohexomutase, alpha/beta/alpha domain III PF553_00455 IPR011005 Dihydropteroate synthase-like PF553_00455 IPR006390 Dihydropteroate synthase PF553_00455 IPR000489 Pterin-binding domain PF553_00475 IPR023650 Beta-lactamase, class-A active site PF553_00475 IPR000871 Beta-lactamase, class-A PF553_00475 IPR012338 Beta-lactamase/transpeptidase-like PF553_00480 IPR032874 DDE domain PF553_00480 IPR001584 Integrase, catalytic core PF553_00480 IPR012337 Ribonuclease H-like superfamily PF553_00480 IPR036397 Ribonuclease H superfamily PF553_00485 IPR004840 Amino acid permease, conserved site PF553_00485 IPR004841 Amino acid permease/ SLC12A domain PF553_00495 IPR016160 Aldehyde dehydrogenase, cysteine active site PF553_00495 IPR010061 Methylmalonate-semialdehyde dehydrogenase PF553_00495 IPR015590 Aldehyde dehydrogenase domain PF553_00495 IPR016161 Aldehyde/histidinol dehydrogenase PF553_00495 IPR016163 Aldehyde dehydrogenase, C-terminal PF553_00495 IPR016162 Aldehyde dehydrogenase, N-terminal PF553_00500 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily PF553_00500 IPR013328 6-phosphogluconate dehydrogenase, domain 2 PF553_00500 IPR011548 3-hydroxyisobutyrate dehydrogenase PF553_00500 IPR036291 NAD(P)-binding domain superfamily PF553_00500 IPR029154 3-hydroxyisobutyrate dehydrogenase, NAD-binding domain PF553_00500 IPR002204 3-hydroxyisobutyrate dehydrogenase-related, conserved site PF553_00500 IPR015815 3-hydroxyisobutyrate dehydrogenase-related PF553_00500 IPR006115 6-phosphogluconate dehydrogenase, NADP-binding PF553_00505 IPR042099 AMP-dependent synthetase-like superfamily PF553_00505 IPR000873 AMP-dependent synthetase/ligase PF553_00505 IPR020845 AMP-binding, conserved site PF553_00505 IPR025110 AMP-binding enzyme, C-terminal domain PF553_00510 IPR036250 Acyl-CoA dehydrogenase-like, C-terminal PF553_00510 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily PF553_00510 IPR037069 Acyl-CoA dehydrogenase/oxidase, N-terminal domain superfamily PF553_00510 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal PF553_00510 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal PF553_00510 IPR006091 Acyl-CoA oxidase/dehydrogenase, central domain PF553_00510 IPR006089 Acyl-CoA dehydrogenase, conserved site PF553_00515 IPR029045 ClpP/crotonase-like domain superfamily PF553_00515 IPR014748 Enoyl-CoA hydratase, C-terminal PF553_00515 IPR018376 Enoyl-CoA hydratase/isomerase, conserved site PF553_00515 IPR001753 Enoyl-CoA hydratase/isomerase PF553_00520 IPR029045 ClpP/crotonase-like domain superfamily PF553_00520 IPR018376 Enoyl-CoA hydratase/isomerase, conserved site PF553_00520 IPR001753 Enoyl-CoA hydratase/isomerase PF553_00520 IPR014748 Enoyl-CoA hydratase, C-terminal PF553_00525 IPR011701 Major facilitator superfamily PF553_00525 IPR020846 Major facilitator superfamily domain PF553_00525 IPR005828 Major facilitator, sugar transporter-like PF553_00525 IPR036259 MFS transporter superfamily PF553_00525 IPR004736 MFS transporter, metabolite:H symporter PF553_00525 IPR005829 Sugar transporter, conserved site PF553_00530 IPR016181 Acyl-CoA N-acyltransferase PF553_00530 IPR001690 Autoinducer synthase PF553_00540 IPR000792 Transcription regulator LuxR, C-terminal PF553_00540 IPR005143 Transcription factor LuxR-like, autoinducer-binding domain PF553_00540 IPR036693 Transcription factor LuxR-like, autoinducer-binding domain superfamily PF553_00540 IPR036388 Winged helix-like DNA-binding domain superfamily PF553_00540 IPR016032 Signal transduction response regulator, C-terminal effector PF553_00545 IPR042099 AMP-dependent synthetase-like superfamily PF553_00545 IPR000873 AMP-dependent synthetase/ligase PF553_00550 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily PF553_00550 IPR006089 Acyl-CoA dehydrogenase, conserved site PF553_00550 IPR006091 Acyl-CoA oxidase/dehydrogenase, central domain PF553_00550 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal PF553_00550 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal PF553_00550 IPR036250 Acyl-CoA dehydrogenase-like, C-terminal PF553_00550 IPR037069 Acyl-CoA dehydrogenase/oxidase, N-terminal domain superfamily PF553_00555 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase PF553_00555 IPR029058 Alpha/Beta hydrolase fold PF553_00555 IPR036736 ACP-like superfamily PF553_00555 IPR018201 Beta-ketoacyl synthase, active site PF553_00555 IPR014031 Beta-ketoacyl synthase, C-terminal PF553_00555 IPR014030 Beta-ketoacyl synthase, N-terminal PF553_00555 IPR013217 Methyltransferase type 12 PF553_00555 IPR032821 Ketoacyl-synthetase, C-terminal extension PF553_00555 IPR020841 Polyketide synthase, beta-ketoacyl synthase domain PF553_00555 IPR020807 Polyketide synthase, dehydratase domain PF553_00555 IPR042104 Polyketide synthase, dehydratase domain superfamily PF553_00555 IPR020806 Polyketide synthase, phosphopantetheine-binding domain PF553_00555 IPR009081 Phosphopantetheine binding ACP domain PF553_00555 IPR006162 Phosphopantetheine attachment site PF553_00555 IPR016039 Thiolase-like PF553_00555 IPR020615 Thiolase, acyl-enzyme intermediate active site PF553_00555 IPR001031 Thioesterase PF553_00560 IPR036736 ACP-like superfamily PF553_00560 IPR001031 Thioesterase PF553_00560 IPR006162 Phosphopantetheine attachment site PF553_00560 IPR009081 Phosphopantetheine binding ACP domain PF553_00560 IPR020806 Polyketide synthase, phosphopantetheine-binding domain PF553_00560 IPR001242 Condensation domain PF553_00560 IPR023213 Chloramphenicol acetyltransferase-like domain superfamily PF553_00560 IPR042099 AMP-dependent synthetase-like superfamily PF553_00560 IPR000873 AMP-dependent synthetase/ligase PF553_00560 IPR010071 Amino acid adenylation domain PF553_00560 IPR029058 Alpha/Beta hydrolase fold PF553_00560 IPR020845 AMP-binding, conserved site PF553_00560 IPR025110 AMP-binding enzyme, C-terminal domain PF553_00575 IPR005888 dTDP-glucose 4,6-dehydratase PF553_00575 IPR020904 Short-chain dehydrogenase/reductase, conserved site PF553_00575 IPR036291 NAD(P)-binding domain superfamily PF553_00575 IPR016040 NAD(P)-binding domain PF553_00585 IPR009057 Homeobox-like domain superfamily PF553_00595 IPR004291 Transposase, IS66 PF553_00595 IPR024463 Transposase TnpC, homeodomain PF553_00595 IPR039552 Transposase IS66, C-terminal PF553_00595 IPR024474 Zinc-finger binding domain of transposase IS66 PF553_00615 IPR002634 BolA protein PF553_00615 IPR036065 BolA-like superfamily PF553_00625 IPR027417 P-loop containing nucleoside triphosphate hydrolase PF553_00625 IPR025669 AAA domain PF553_00640 IPR032818 DedA family PF553_00640 IPR032816 SNARE associated Golgi protein PF553_00645 IPR032808 DoxX family PF553_00650 IPR016991 Protein of unknown function UCP032178 PF553_00650 IPR007383 Protein of unknown function DUF445 PF553_00655 IPR025777 GMP synthetase ATP pyrophosphatase domain PF553_00655 IPR022310 NAD/GMP synthase PF553_00655 IPR022955 GMP synthase PF553_00655 IPR029062 Class I glutamine amidotransferase-like PF553_00655 IPR017926 Glutamine amidotransferase PF553_00655 IPR001674 GMP synthase, C-terminal PF553_00655 IPR004739 GMP synthase, glutamine amidotransferase PF553_00655 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold PF553_00660 IPR025184 Domain of unknown function DUF4111 PF553_00660 IPR002934 Polymerase, nucleotidyl transferase domain PF553_00660 IPR024172 Streptomycin 3''-adenylyltransferase PF553_00665 IPR005149 Transcription regulator PadR, N-terminal PF553_00665 IPR036388 Winged helix-like DNA-binding domain superfamily PF553_00665 IPR036390 Winged helix DNA-binding domain superfamily PF553_00675 IPR012093 Pirin PF553_00675 IPR008778 Pirin, C-terminal domain PF553_00675 IPR003829 Pirin, N-terminal domain PF553_00675 IPR014710 RmlC-like jelly roll fold PF553_00675 IPR011051 RmlC-like cupin domain superfamily PF553_00695 IPR001278 Arginine-tRNA ligase PF553_00695 IPR035684 Arginyl-tRNA synthetase, catalytic core domain PF553_00695 IPR036695 Arginyl tRNA synthetase N-terminal domain superfamily PF553_00695 IPR009080 Aminoacyl-tRNA synthetase, class Ia, anticodon-binding PF553_00695 IPR008909 DALR anticodon binding PF553_00695 IPR005148 Arginyl tRNA synthetase N-terminal domain PF553_00700 IPR012302 Malic enzyme, NAD-binding PF553_00700 IPR037062 Malic enzyme, N-terminal domain superfamily PF553_00700 IPR012301 Malic enzyme, N-terminal domain PF553_00700 IPR015884 Malic enzyme, conserved site PF553_00700 IPR001891 Malic oxidoreductase PF553_00700 IPR023667 NAD-dependent malic enzyme, proteobacteria PF553_00700 IPR036291 NAD(P)-binding domain superfamily PF553_00710 IPR011008 Dimeric alpha-beta barrel PF553_00710 IPR006314 Dyp-type peroxidase PF553_00715 IPR004778 Homoserine/Threonine efflux protein PF553_00715 IPR001123 Amino acid exporter protein, LeuE-type PF553_00720 IPR001626 ABC transporter, TroCD-like PF553_00720 IPR037294 ABC transporter, BtuC-like PF553_00725 IPR017882 Zinc import ATP-binding protein ZnuC PF553_00725 IPR027417 P-loop containing nucleoside triphosphate hydrolase PF553_00725 IPR017871 ABC transporter, conserved site PF553_00725 IPR003439 ABC transporter-like PF553_00725 IPR003593 AAA+ ATPase domain PF553_00745 IPR035908 ATP synthase, F0 complex, subunit A superfamily PF553_00745 IPR000568 ATP synthase, F0 complex, subunit A PF553_00745 IPR023011 ATP synthase, F0 complex, subunit A, active site PF553_00750 IPR005953 ATP synthase, F0 complex, subunit C, bacterial/chloroplast PF553_00750 IPR000454 ATP synthase, F0 complex, subunit C PF553_00750 IPR020537 ATP synthase, F0 complex, subunit C, DCCD-binding site PF553_00750 IPR002379 V-ATPase proteolipid subunit C-like domain PF553_00750 IPR035921 F/V-ATP synthase subunit C superfamily PF553_00750 IPR038662 F1F0 ATP synthase subunit C superfamily PF553_00755 IPR028987 F-type ATP synthase subunit B-like, membrane domain superfamily PF553_00755 IPR002146 ATP synthase, F0 complex, subunit b/b', bacterial/chloroplast PF553_00755 IPR005864 ATP synthase, F0 complex, subunit b, bacterial PF553_00760 IPR000711 ATPase, OSCP/delta subunit PF553_00760 IPR020781 ATPase, OSCP/delta subunit, conserved site PF553_00760 IPR026015 F1F0 ATP synthase OSCP/delta subunit, N-terminal domain superfamily PF553_00765 IPR000793 ATP synthase, alpha subunit, C-terminal PF553_00765 IPR033732 ATP synthase, F1 complex, alpha subunit nucleotide-binding domain PF553_00765 IPR005294 ATP synthase, F1 complex, alpha subunit PF553_00765 IPR020003 ATPase, alpha/beta subunit, nucleotide-binding domain, active site PF553_00765 IPR004100 ATPase, F1/V1/A1 complex, alpha/beta subunit, N-terminal domain PF553_00765 IPR036121 ATPase, F1/V1/A1 complex, alpha/beta subunit, N-terminal domain superfamily PF553_00765 IPR023366 ATP synthase subunit alpha, N-terminal domain-like superfamily PF553_00765 IPR000194 ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain PF553_00765 IPR027417 P-loop containing nucleoside triphosphate hydrolase PF553_00765 IPR038376 ATP synthase, alpha subunit, C-terminal domain superfamily PF553_00770 IPR023632 ATP synthase, F1 complex, gamma subunit conserved site PF553_00770 IPR035968 ATP synthase, F1 complex, gamma subunit superfamily PF553_00770 IPR000131 ATP synthase, F1 complex, gamma subunit PF553_00775 IPR020003 ATPase, alpha/beta subunit, nucleotide-binding domain, active site PF553_00775 IPR004100 ATPase, F1/V1/A1 complex, alpha/beta subunit, N-terminal domain PF553_00775 IPR036121 ATPase, F1/V1/A1 complex, alpha/beta subunit, N-terminal domain superfamily PF553_00775 IPR000194 ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain PF553_00775 IPR024034 ATPase, F1/V1 complex, beta/alpha subunit, C-terminal PF553_00775 IPR027417 P-loop containing nucleoside triphosphate hydrolase PF553_00775 IPR005722 ATP synthase, F1 complex, beta subunit PF553_00775 IPR003593 AAA+ ATPase domain PF553_00780 IPR036794 ATP synthase delta/epsilon subunit, C-terminal domain superfamily PF553_00780 IPR001469 ATP synthase, F1 complex, delta/epsilon subunit PF553_00780 IPR020546 ATP synthase, F1 complex, delta/epsilon subunit, N-terminal PF553_00780 IPR036771 F0F1 ATP synthase delta/epsilon subunit, N-terminal PF553_00785 IPR016596 Protein of unknown function UCP012335 PF553_00785 IPR022548 Domain of unknown function DUF2846 PF553_00795 IPR033674 Thioredoxin/glutathione peroxidase BtuE PF553_00795 IPR000889 Glutathione peroxidase PF553_00795 IPR029759 Glutathione peroxidase active site PF553_00795 IPR029760 Glutathione peroxidase conserved site PF553_00795 IPR036249 Thioredoxin-like superfamily PF553_00805 IPR011701 Major facilitator superfamily PF553_00805 IPR020846 Major facilitator superfamily domain PF553_00805 IPR036259 MFS transporter superfamily PF553_00810 IPR009057 Homeobox-like domain superfamily PF553_00810 IPR001647 DNA-binding HTH domain, TetR-type PF553_00810 IPR036271 Tetracyclin repressor-like, C-terminal domain superfamily PF553_00815 IPR000620 EamA domain PF553_00820 IPR017945 DHBP synthase RibB-like alpha/beta domain superfamily PF553_00820 IPR023535 Threonylcarbamoyl-AMP synthase PF553_00820 IPR006070 YrdC-like domain PF553_00825 IPR036388 Winged helix-like DNA-binding domain superfamily PF553_00825 IPR041614 DprA, winged helix domain PF553_00825 IPR003488 DNA recombination-mediator protein A PF553_00835 IPR023635 Peptide deformylase PF553_00835 IPR036821 Peptide deformylase superfamily PF553_00895 IPR036052 Tryptophan synthase beta subunit-like PLP-dependent enzyme PF553_00895 IPR005856 Cysteine synthase PF553_00895 IPR005859 Cysteine synthase CysK PF553_00895 IPR001216 Cysteine synthase/cystathionine beta-synthase, pyridoxal-phosphate attachment site PF553_00895 IPR001926 Pyridoxal-phosphate dependent enzyme PF553_00905 IPR037513 NAD(P)H dehydrogenase (quinone), prokaryotic PF553_00905 IPR010089 Flavoprotein WrbA-like PF553_00905 IPR005025 NADPH-dependent FMN reductase-like PF553_00905 IPR008254 Flavodoxin/nitric oxide synthase PF553_00905 IPR029039 Flavoprotein-like superfamily PF553_00925 IPR022946 Uncharacterised protein family UPF0313 PF553_00925 IPR006638 Elp3/MiaB/NifB PF553_00925 IPR020612 Methylthiotransferase, conserved site PF553_00925 IPR007197 Radical SAM PF553_00925 IPR023404 Radical SAM, alpha/beta horseshoe PF553_00925 IPR024560 Uncharacterised protein family UPF0313, C-terminal PF553_00925 IPR013704 Uncharacterised protein family UPF0313, N-terminal PF553_00945 IPR001126 UmuC domain PF553_00945 IPR036775 DNA polymerase, Y-family, little finger domain superfamily PF553_00945 IPR024728 DNA polymerase type-Y, HhH motif PF553_00945 IPR022880 DNA polymerase IV PF553_00945 IPR017961 DNA polymerase, Y-family, little finger domain PF553_00955 IPR023721 Multidrug resistance protein MdtD PF553_00955 IPR036259 MFS transporter superfamily PF553_00955 IPR020846 Major facilitator superfamily domain PF553_00955 IPR011701 Major facilitator superfamily PF553_00960 IPR005269 Cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG PF553_00960 IPR031100 LOG family PF553_00965 IPR005170 Transporter-associated domain PF553_00965 IPR005496 Integral membrane protein TerC PF553_00965 IPR016169 FAD-binding, type PCMH, subdomain 2 PF553_00965 IPR036318 FAD-binding, type PCMH-like superfamily PF553_00965 IPR000644 CBS domain PF553_00970 IPR023006 Uncharacterised protein family UPF0225 PF553_00970 IPR032710 NTF2-like domain superfamily PF553_00970 IPR004027 SEC-C motif PF553_00975 IPR005115 Uncharacterised domain UPF0126 PF553_00980 IPR011701 Major facilitator superfamily PF553_00980 IPR005829 Sugar transporter, conserved site PF553_00980 IPR036259 MFS transporter superfamily PF553_00980 IPR020846 Major facilitator superfamily domain PF553_00985 IPR035516 DNA gyrase/topoisomerase IV, subunit A, C-terminal PF553_00985 IPR006691 DNA gyrase/topoisomerase IV, subunit A, C-terminal repeat PF553_00985 IPR013760 DNA topoisomerase, type IIA-like domain superfamily PF553_00985 IPR002205 DNA topoisomerase, type IIA, subunit A/C-terminal PF553_00985 IPR013758 DNA topoisomerase, type IIA, subunit A/ C-terminal, alpha-beta PF553_00985 IPR005742 DNA topoisomerase IV, subunit A, Gram-negative PF553_00985 IPR013757 Type IIA DNA topoisomerase subunit A, alpha-helical domain superfamily PF553_00990 IPR025110 AMP-binding enzyme, C-terminal domain PF553_00990 IPR020845 AMP-binding, conserved site PF553_00990 IPR000873 AMP-dependent synthetase/ligase PF553_00990 IPR042099 AMP-dependent synthetase-like superfamily PF553_01005 IPR008162 Inorganic pyrophosphatase PF553_01005 IPR036649 Inorganic pyrophosphatase superfamily PF553_01010 IPR023614 Porin domain superfamily PF553_01010 IPR005318 Outer membrane porin, bacterial PF553_01025 IPR020625 Schiff base-forming aldolase, active site PF553_01025 IPR002220 DapA-like PF553_01025 IPR005263 4-hydroxy-tetrahydrodipicolinate synthase, DapA PF553_01025 IPR020624 Schiff base-forming aldolase, conserved site PF553_01025 IPR013785 Aldolase-type TIM barrel PF553_01030 IPR001303 Class II aldolase/adducin N-terminal PF553_01030 IPR036409 Class II aldolase/adducin N-terminal domain superfamily PF553_01035 IPR036390 Winged helix DNA-binding domain superfamily PF553_01035 IPR036388 Winged helix-like DNA-binding domain superfamily PF553_01035 IPR004839 Aminotransferase, class I/classII PF553_01035 IPR015424 Pyridoxal phosphate-dependent transferase PF553_01035 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 PF553_01035 IPR015421 Pyridoxal phosphate-dependent transferase, major domain PF553_01035 IPR000524 Transcription regulator HTH, GntR PF553_01050 IPR001584 Integrase, catalytic core PF553_01050 IPR036397 Ribonuclease H superfamily PF553_01050 IPR012337 Ribonuclease H-like superfamily PF553_01065 IPR009057 Homeobox-like domain superfamily PF553_01075 IPR024474 Zinc-finger binding domain of transposase IS66 PF553_01075 IPR039552 Transposase IS66, C-terminal PF553_01075 IPR004291 Transposase, IS66 PF553_01075 IPR024463 Transposase TnpC, homeodomain PF553_01085 IPR009057 Homeobox-like domain superfamily PF553_01085 IPR001647 DNA-binding HTH domain, TetR-type PF553_01085 IPR036271 Tetracyclin repressor-like, C-terminal domain superfamily PF553_01105 IPR012093 Pirin PF553_01105 IPR003829 Pirin, N-terminal domain PF553_01105 IPR041602 Quercetin 2,3-dioxygenase, C-terminal cupin domain PF553_01105 IPR014710 RmlC-like jelly roll fold PF553_01105 IPR011051 RmlC-like cupin domain superfamily PF553_01110 IPR001926 Pyridoxal-phosphate dependent enzyme PF553_01110 IPR000634 Serine/threonine dehydratase, pyridoxal-phosphate-binding site PF553_01110 IPR036052 Tryptophan synthase beta subunit-like PLP-dependent enzyme PF553_01115 IPR039445 Transcriptional regulator DauR-like, HTH domain PF553_01115 IPR013559 YheO-like PF553_01115 IPR039446 Transcriptional regulator DauR-like PF553_01125 IPR023213 Chloramphenicol acetyltransferase-like domain superfamily PF553_01125 IPR006162 Phosphopantetheine attachment site PF553_01125 IPR020806 Polyketide synthase, phosphopantetheine-binding domain PF553_01125 IPR010060 Non-ribosomal peptide synthase PF553_01125 IPR010071 Amino acid adenylation domain PF553_01125 IPR009081 Phosphopantetheine binding ACP domain PF553_01125 IPR025110 AMP-binding enzyme, C-terminal domain PF553_01125 IPR020845 AMP-binding, conserved site PF553_01125 IPR000873 AMP-dependent synthetase/ligase PF553_01125 IPR042099 AMP-dependent synthetase-like superfamily PF553_01125 IPR036736 ACP-like superfamily PF553_01125 IPR001242 Condensation domain PF553_01130 IPR020802 Polyketide synthase, thioesterase domain PF553_01130 IPR009081 Phosphopantetheine binding ACP domain PF553_01130 IPR001031 Thioesterase PF553_01130 IPR001242 Condensation domain PF553_01130 IPR023213 Chloramphenicol acetyltransferase-like domain superfamily PF553_01130 IPR042099 AMP-dependent synthetase-like superfamily PF553_01130 IPR000873 AMP-dependent synthetase/ligase PF553_01130 IPR020806 Polyketide synthase, phosphopantetheine-binding domain PF553_01130 IPR010071 Amino acid adenylation domain PF553_01130 IPR029058 Alpha/Beta hydrolase fold PF553_01130 IPR020845 AMP-binding, conserved site PF553_01130 IPR025110 AMP-binding enzyme, C-terminal domain PF553_01130 IPR036736 ACP-like superfamily PF553_01135 IPR037294 ABC transporter, BtuC-like PF553_01135 IPR000522 ABC transporter, permease protein, BtuC-like PF553_01140 IPR037294 ABC transporter, BtuC-like PF553_01140 IPR000522 ABC transporter, permease protein, BtuC-like PF553_01145 IPR003439 ABC transporter-like PF553_01145 IPR003593 AAA+ ATPase domain PF553_01145 IPR017871 ABC transporter, conserved site PF553_01145 IPR027417 P-loop containing nucleoside triphosphate hydrolase PF553_01150 IPR033870 FatB domain PF553_01150 IPR002491 ABC transporter periplasmic binding domain PF553_01155 IPR039423 TonB-dependent receptor-like PF553_01155 IPR030149 TonB-dependent siderophore receptor FcuA/FatA PF553_01155 IPR012910 TonB-dependent receptor, plug domain PF553_01155 IPR010105 TonB-dependent siderophore receptor PF553_01155 IPR000531 TonB-dependent receptor-like, beta-barrel PF553_01155 IPR010916 TonB box, conserved site PF553_01155 IPR036942 TonB-dependent receptor-like, beta-barrel domain superfamily PF553_01155 IPR010917 TonB-dependent receptor, conserved site PF553_01155 IPR037066 TonB-dependent receptor, plug domain superfamily PF553_01160 IPR036188 FAD/NAD(P)-binding domain superfamily PF553_01160 IPR031043 Putative histamine N-monooxygenase PF553_01160 IPR025700 L-lysine 6-monooxygenase/L-ornithine 5-monooxygenase PF553_01190 IPR036412 HAD-like superfamily PF553_01190 IPR001757 P-type ATPase PF553_01190 IPR027256 P-type ATPase, subfamily IB PF553_01190 IPR023214 HAD superfamily PF553_01190 IPR023299 P-type ATPase, cytoplasmic domain N PF553_01190 IPR023298 P-type ATPase, transmembrane domain superfamily PF553_01190 IPR008250 P-type ATPase, A domain superfamily PF553_01190 IPR018303 P-type ATPase, phosphorylation site PF553_01195 IPR006290 Heavy metal sensor kinase PF553_01195 IPR004358 Signal transduction histidine kinase-related protein, C-terminal PF553_01195 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily PF553_01195 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain PF553_01195 IPR003660 HAMP domain PF553_01195 IPR036890 Histidine kinase/HSP90-like ATPase superfamily PF553_01195 IPR003594 Histidine kinase/HSP90-like ATPase PF553_01195 IPR005467 Histidine kinase domain PF553_01200 IPR011006 CheY-like superfamily PF553_01200 IPR001867 OmpR/PhoB-type DNA-binding domain PF553_01200 IPR006291 Transcriptional regulatory protein PcoR, heavy metal response PF553_01200 IPR001789 Signal transduction response regulator, receiver domain PF553_01200 IPR039420 Transcriptional regulatory protein WalR-like PF553_01200 IPR036388 Winged helix-like DNA-binding domain superfamily PF553_01210 IPR019546 Twin-arginine translocation pathway, signal sequence, bacterial/archaeal PF553_01210 IPR006311 Twin-arginine translocation pathway, signal sequence PF553_01210 IPR034279 Copper resistance protein, third cupredoxin domain PF553_01210 IPR034282 Copper resistance protein CopA, second cupredoxin domain PF553_01210 IPR034284 Copper resistance protein, first cupredoxin domain PF553_01210 IPR006376 Copper-resistance protein CopA PF553_01210 IPR002355 Multicopper oxidase, copper-binding site PF553_01210 IPR033138 Multicopper oxidases, conserved site PF553_01210 IPR011707 Multicopper oxidase, type 3 PF553_01210 IPR011706 Multicopper oxidase, type 2 PF553_01210 IPR001117 Multicopper oxidase, type 1 PF553_01210 IPR008972 Cupredoxin PF553_01235 IPR027417 P-loop containing nucleoside triphosphate hydrolase PF553_01235 IPR011642 Nucleoside transporter/FeoB GTPase, Gate domain PF553_01235 IPR006073 GTP binding domain PF553_01235 IPR011640 Ferrous iron transport protein B, C-terminal PF553_01235 IPR003373 Ferrous iron transport protein B PF553_01235 IPR030389 FeoB-type guanine nucleotide-binding (G) domain PF553_01250 IPR009061 Putative DNA-binding domain superfamily PF553_01250 IPR011794 Hg(II)-responsive transcriptional regulator PF553_01250 IPR000551 MerR-type HTH domain PF553_01300 IPR002187 Nitrogen regulatory protein PII PF553_01300 IPR011322 Nitrogen regulatory PII-like, alpha/beta PF553_01300 IPR015867 Nitrogen regulatory protein PII/ATP phosphoribosyltransferase, C-terminal PF553_01300 IPR017918 Nitrogen regulatory protein PII, conserved site PF553_01300 IPR002332 Nitrogen regulatory protein P-II, urydylation site PF553_01305 IPR024041 Ammonium transporter AmtB-like domain PF553_01305 IPR018047 Ammonium transporter, conserved site PF553_01305 IPR029020 Ammonium/urea transporter PF553_01305 IPR001905 Ammonium transporter PF553_01310 IPR005144 ATP-cone domain PF553_01310 IPR003796 Ribonucleotide reductase regulator NrdR-like PF553_01315 IPR016192 APOBEC/CMP deaminase, zinc-binding PF553_01315 IPR002125 Cytidine and deoxycytidylate deaminase domain PF553_01315 IPR016193 Cytidine deaminase-like PF553_01315 IPR024072 Dihydrofolate reductase-like domain superfamily PF553_01315 IPR004794 Riboflavin biosynthesis protein RibD PF553_01315 IPR011549 Riboflavin-specific deaminase, C-terminal PF553_01315 IPR002734 Bacterial bifunctional deaminase-reductase, C-terminal PF553_01325 IPR026017 Lumazine-binding domain PF553_01325 IPR017938 Riboflavin synthase-like beta-barrel PF553_01325 IPR023366 ATP synthase subunit alpha, N-terminal domain-like superfamily PF553_01325 IPR001783 Lumazine-binding protein PF553_01345 IPR000819 Peptidase M17, leucyl aminopeptidase, C-terminal PF553_01345 IPR023042 Peptidase M17, leucine aminopeptidase PF553_01345 IPR008283 Peptidase M17, leucyl aminopeptidase, N-terminal PF553_01345 IPR011356 Peptidase M17, leucine aminopeptidase/peptidase B PF553_01355 IPR030923 LPS export ABC transporter permease LptG PF553_01355 IPR005495 Permease LptG/LptF-related PF553_01360 IPR036646 BPG-independent phosphoglycerate mutase, domain B superfamily PF553_01360 IPR005995 Phosphoglycerate mutase, 2,3-bisphosphoglycerate-independent PF553_01360 IPR011258 BPG-independent PGAM, N-terminal PF553_01360 IPR017850 Alkaline-phosphatase-like, core domain superfamily PF553_01360 IPR006124 Metalloenzyme PF553_01365 IPR029045 ClpP/crotonase-like domain superfamily PF553_01365 IPR001478 PDZ domain PF553_01365 IPR036034 PDZ superfamily PF553_01365 IPR004447 C-terminal-processing peptidase S41A PF553_01365 IPR005151 Tail specific protease PF553_01370 IPR002078 RNA polymerase sigma factor 54 interaction domain PF553_01370 IPR025662 Sigma-54 interaction domain, ATP-binding site 1 PF553_01370 IPR001789 Signal transduction response regulator, receiver domain PF553_01370 IPR025944 Sigma-54 interaction domain, conserved site PF553_01370 IPR002197 DNA binding HTH domain, Fis-type PF553_01370 IPR027417 P-loop containing nucleoside triphosphate hydrolase PF553_01370 IPR003593 AAA+ ATPase domain PF553_01370 IPR025943 Sigma-54 interaction domain, ATP-binding site 2 PF553_01370 IPR011006 CheY-like superfamily PF553_01370 IPR009057 Homeobox-like domain superfamily PF553_01375 IPR003594 Histidine kinase/HSP90-like ATPase PF553_01375 IPR036890 Histidine kinase/HSP90-like ATPase superfamily PF553_01375 IPR005467 Histidine kinase domain PF553_01375 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain PF553_01375 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily PF553_01375 IPR000014 PAS domain PF553_01375 IPR004358 Signal transduction histidine kinase-related protein, C-terminal PF553_01380 IPR000792 Transcription regulator LuxR, C-terminal PF553_01380 IPR001789 Signal transduction response regulator, receiver domain PF553_01380 IPR011006 CheY-like superfamily PF553_01380 IPR016032 Signal transduction response regulator, C-terminal effector PF553_01385 IPR018044 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A PF553_01385 IPR001967 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A, N-terminal PF553_01385 IPR012338 Beta-lactamase/transpeptidase-like PF553_01390 IPR001926 Pyridoxal-phosphate dependent enzyme PF553_01390 IPR000634 Serine/threonine dehydratase, pyridoxal-phosphate-binding site PF553_01390 IPR004450 Threonine synthase-like PF553_01390 IPR026260 Threonine synthase, bacterial/archaeal PF553_01390 IPR036052 Tryptophan synthase beta subunit-like PLP-dependent enzyme PF553_01395 IPR036291 NAD(P)-binding domain superfamily PF553_01395 IPR005106 Aspartate/homoserine dehydrogenase, NAD-binding PF553_01395 IPR016204 Homoserine dehydrogenase PF553_01395 IPR001342 Homoserine dehydrogenase, catalytic PF553_01395 IPR019811 Homoserine dehydrogenase, conserved site PF553_01395 IPR002912 ACT domain PF553_01400 IPR033954 Disulphide bond isomerase, DsbC/G PF553_01400 IPR018950 Disulphide bond isomerase, DsbC/G, N-terminal PF553_01400 IPR009094 Disulphide bond isomerase DsbC/G, N-terminal domain superfamily PF553_01400 IPR012336 Thioredoxin-like fold PF553_01400 IPR036249 Thioredoxin-like superfamily PF553_01400 IPR017937 Thioredoxin, conserved site PF553_01400 IPR013766 Thioredoxin domain PF553_01405 IPR002104 Integrase, catalytic domain PF553_01405 IPR023009 Tyrosine recombinase XerC/XerD PF553_01405 IPR011932 Tyrosine recombinase XerD PF553_01405 IPR004107 Integrase, SAM-like, N-terminal PF553_01405 IPR010998 Integrase/recombinase, N-terminal PF553_01405 IPR011010 DNA breaking-rejoining enzyme, catalytic core PF553_01405 IPR013762 Integrase-like, catalytic domain superfamily PF553_01415 IPR030389 FeoB-type guanine nucleotide-binding (G) domain PF553_01415 IPR011642 Nucleoside transporter/FeoB GTPase, Gate domain PF553_01415 IPR006073 GTP binding domain PF553_01415 IPR011640 Ferrous iron transport protein B, C-terminal PF553_01415 IPR003373 Ferrous iron transport protein B PF553_01415 IPR027417 P-loop containing nucleoside triphosphate hydrolase PF553_01425 IPR036565 Mur-like, catalytic domain superfamily PF553_01425 IPR004101 Mur ligase, C-terminal PF553_01425 IPR036615 Mur ligase, C-terminal domain superfamily PF553_01425 IPR013221 Mur ligase, central PF553_01425 IPR005762 UDP-N-acetylmuramoylalanine-D-glutamate ligase PF553_01430 IPR018365 Cell cycle, FtsW / RodA / SpoVE, conserved site PF553_01430 IPR013437 Probable peptidoglycan glycosyltransferase FtsW PF553_01430 IPR001182 Probable peptidoglycan glycosyltransferase FtsW/RodA PF553_01435 IPR022380 Glutamyl-Q tRNA(Asp) synthetase PF553_01435 IPR020058 Glutamyl/glutaminyl-tRNA synthetase, class Ib, catalytic domain PF553_01435 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold PF553_01435 IPR000924 Glutamyl/glutaminyl-tRNA synthetase PF553_01440 IPR012784 RNA polymerase-binding transcription factor DksA PF553_01440 IPR037187 DksA, N-terminal domain superfamily PF553_01440 IPR020460 Zinc finger, DksA/TraR C4-type, bacteria PF553_01440 IPR000962 Zinc finger, DksA/TraR C4-type PF553_01440 IPR020458 Zinc finger, DksA/TraR C4-type conserved site PF553_01445 IPR004843 Calcineurin-like phosphoesterase domain, ApaH type PF553_01445 IPR026575 3,5-cyclic adenosine monophosphate phosphodiesterase CpdA PF553_01445 IPR029052 Metallo-dependent phosphatase-like PF553_01450 IPR004385 Nucleoside diphosphate pyrophosphatase PF553_01450 IPR015797 NUDIX hydrolase-like domain superfamily PF553_01450 IPR000086 NUDIX hydrolase domain PF553_01455 IPR002817 Phosphomethylpyrimidine synthase ThiC/5-hydroxybenzimidazole synthase BzaA/B PF553_01455 IPR025747 ThiC-associated domain PF553_01455 IPR037509 Phosphomethylpyrimidine synthase PF553_01455 IPR038521 ThiC/Bza superfamily PF553_01470 IPR004779 Carboxylate/Amino Acid/Amine Transporter PF553_01470 IPR000620 EamA domain PF553_01475 IPR003423 Outer membrane efflux protein PF553_01475 IPR010130 Type I secretion outer membrane protein, TolC PF553_01480 IPR028366 Phosphate transport system protein PhoU PF553_01480 IPR038078 PhoU-like domain superfamily PF553_01480 IPR026022 PhoU domain PF553_01485 IPR007457 Fe(II) trafficking protein YggX PF553_01485 IPR036766 Fe(II) trafficking protein YggX superfamily PF553_01490 IPR020557 Fumarate lyase, conserved site PF553_01490 IPR024083 Fumarase/histidase, N-terminal PF553_01490 IPR008948 L-Aspartase-like PF553_01490 IPR022761 Fumarate lyase, N-terminal PF553_01490 IPR000362 Fumarate lyase family PF553_01490 IPR029419 Argininosuccinate lyase, C-terminal PF553_01490 IPR009049 Argininosuccinate lyase PF553_01495 IPR010559 Signal transduction histidine kinase, internal region PF553_01495 IPR003594 Histidine kinase/HSP90-like ATPase PF553_01495 IPR029016 GAF-like domain superfamily PF553_01495 IPR036890 Histidine kinase/HSP90-like ATPase superfamily PF553_01495 IPR011620 Signal transduction histidine kinase, 5TM receptor LytS, transmembrane region PF553_01500 IPR011006 CheY-like superfamily PF553_01500 IPR007492 LytTR DNA-binding domain PF553_01500 IPR001789 Signal transduction response regulator, receiver domain PF553_01505 IPR036803 Porphobilinogen deaminase, C-terminal domain superfamily PF553_01505 IPR022417 Porphobilinogen deaminase, N-terminal PF553_01505 IPR000860 Porphobilinogen deaminase PF553_01505 IPR022418 Porphobilinogen deaminase, C-terminal PF553_01505 IPR022419 Porphobilinogen deaminase, dipyrromethane cofactor binding site PF553_01530 IPR027444 Histone-like protein H-NS, C-terminal domain PF553_01530 IPR037150 Histone-like protein H-NS, C-terminal domain superfamily PF553_01530 IPR001801 Histone-like protein H-NS PF553_01545 IPR038591 NolW-like superfamily PF553_01545 IPR004845 Type II secretion system GspD, conserved site PF553_01545 IPR013356 Type II secretion system GspD PF553_01545 IPR004846 Type II/III secretion system PF553_01545 IPR005644 NolW-like PF553_01545 IPR001775 GspD/PilQ family PF553_01550 IPR008984 SMAD/FHA domain superfamily PF553_01550 IPR000253 Forkhead-associated (FHA) domain PF553_01550 IPR042287 FhaA, N-terminal PF553_01550 IPR022128 Domain of unknown function DUF3662 PF553_01555 IPR006439 HAD hydrolase, subfamily IA PF553_01555 IPR006346 2-phosphoglycolate phosphatase-like, prokaryotic PF553_01555 IPR023198 Phosphoglycolate phosphatase-like, domain 2 PF553_01555 IPR023214 HAD superfamily PF553_01555 IPR041492 Haloacid dehalogenase-like hydrolase PF553_01555 IPR036412 HAD-like superfamily PF553_01555 IPR037512 Phosphoglycolate phosphatase, prokaryotic PF553_01560 IPR006805 Anthranilate synthase component I, N-terminal PF553_01560 IPR005801 ADC synthase PF553_01560 IPR019999 Anthranilate synthase component I-like PF553_01560 IPR015890 Chorismate-utilising enzyme, C-terminal PF553_01560 IPR005256 Anthranilate synthase component I, PabB-like PF553_01585 IPR000795 Transcription factor, GTP-binding domain PF553_01585 IPR009000 Translation protein, beta-barrel domain superfamily PF553_01585 IPR009001 Translation elongation factor EF1A/initiation factor IF2gamma, C-terminal PF553_01585 IPR027417 P-loop containing nucleoside triphosphate hydrolase PF553_01585 IPR004160 Translation elongation factor EFTu/EF1A, C-terminal PF553_01585 IPR031157 Tr-type G domain, conserved site PF553_01585 IPR033720 Elongation factor Tu, domain 2 PF553_01585 IPR004161 Translation elongation factor EFTu-like, domain 2 PF553_01585 IPR041709 Elongation factor Tu (EF-Tu), GTP-binding domain PF553_01585 IPR005225 Small GTP-binding protein domain PF553_01585 IPR004541 Translation elongation factor EFTu/EF1A, bacterial/organelle PF553_01595 IPR005807 SecE subunit of protein translocation complex, bacterial-like PF553_01595 IPR038379 SecE superfamily PF553_01595 IPR001901 Protein translocase complex, SecE/Sec61-gamma subunit PF553_01600 IPR001062 Transcription antitermination protein, NusG PF553_01600 IPR006645 NusG, N-terminal PF553_01600 IPR036735 NusG, N-terminal domain superfamily PF553_01600 IPR014722 Ribosomal protein L2, domain 2 PF553_01600 IPR015869 Transcription antitermination protein, NusG, bacteria, conserved site PF553_01600 IPR008991 Translation protein SH3-like domain superfamily PF553_01600 IPR005824 KOW PF553_01605 IPR006519 Ribosomal protein L11, bacterial-type PF553_01605 IPR000911 Ribosomal protein L11/L12 PF553_01605 IPR036796 Ribosomal protein L11/L12, N-terminal domain superfamily PF553_01605 IPR020784 Ribosomal protein L11, N-terminal PF553_01605 IPR020785 Ribosomal protein L11, conserved site PF553_01605 IPR036769 Ribosomal protein L11, C-terminal domain superfamily PF553_01605 IPR020783 Ribosomal protein L11, C-terminal PF553_01610 IPR023674 Ribosomal protein L1-like PF553_01610 IPR023673 Ribosomal protein L1, conserved site PF553_01610 IPR002143 Ribosomal protein L1 PF553_01610 IPR005878 Ribosomal protein L1, bacterial-type PF553_01610 IPR028364 Ribosomal protein L1/ribosomal biogenesis protein PF553_01610 IPR016095 Ribosomal protein L1, 3-layer alpha/beta-sandwich PF553_01615 IPR022973 Ribosomal protein L10 PF553_01615 IPR001790 Ribosomal protein L10P PF553_01615 IPR002363 Ribosomal protein L10, eubacterial, conserved site PF553_01620 IPR000206 Ribosomal protein L7/L12 PF553_01620 IPR036235 Ribosomal protein L7/L12, oligomerisation domain superfamily PF553_01620 IPR013823 Ribosomal protein L7/L12, C-terminal PF553_01620 IPR008932 Ribosomal protein L7/L12, oligomerisation PF553_01620 IPR014719 Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-like PF553_01625 IPR014724 RNA polymerase Rpb2, OB-fold PF553_01625 IPR007645 RNA polymerase Rpb2, domain 3 PF553_01625 IPR007642 RNA polymerase Rpb2, domain 2 PF553_01625 IPR007644 RNA polymerase, beta subunit, protrusion PF553_01625 IPR007641 RNA polymerase Rpb2, domain 7 PF553_01625 IPR010243 DNA-directed RNA polymerase beta subunit, bacterial-type PF553_01625 IPR007121 RNA polymerase, beta subunit, conserved site PF553_01625 IPR042107 DNA-directed RNA polymerase, beta subunit, external 1 domain superfamily PF553_01625 IPR019462 DNA-directed RNA polymerase, beta subunit, external 1 domain PF553_01625 IPR037034 RNA polymerase Rpb2, domain 2 superfamily PF553_01625 IPR007120 DNA-directed RNA polymerase, subunit 2, hybrid-binding domain PF553_01625 IPR037033 DNA-directed RNA polymerase, subunit 2, hybrid-binding domain superfamily PF553_01625 IPR015712 DNA-directed RNA polymerase, subunit 2 PF553_01630 IPR012754 DNA-directed RNA polymerase, subunit beta-prime PF553_01630 IPR000722 RNA polymerase, alpha subunit PF553_01630 IPR007080 RNA polymerase Rpb1, domain 1 PF553_01630 IPR007066 RNA polymerase Rpb1, domain 3 PF553_01630 IPR042102 RNA polymerase Rpb1, domain 3 superfamily PF553_01630 IPR007083 RNA polymerase Rpb1, domain 4 PF553_01630 IPR007081 RNA polymerase Rpb1, domain 5 PF553_01630 IPR038120 RNA polymerase Rpb1, funnel domain superfamily PF553_01630 IPR006592 RNA polymerase, N-terminal PF553_01655 IPR032813 Putative Na+/H+ antiporter, N-terminal PF553_01655 IPR018461 Na+/H+ antiporter, NhaC-like, C-terminal PF553_01670 IPR003594 Histidine kinase/HSP90-like ATPase PF553_01670 IPR036890 Histidine kinase/HSP90-like ATPase superfamily PF553_01670 IPR037196 HSP90, C-terminal domain PF553_01670 IPR001404 Heat shock protein Hsp90 family PF553_01670 IPR020575 Heat shock protein Hsp90, N-terminal PF553_01670 IPR020568 Ribosomal protein S5 domain 2-type fold PF553_01685 IPR036249 Thioredoxin-like superfamily PF553_01685 IPR001853 DSBA-like thioredoxin domain PF553_01695 IPR009061 Putative DNA-binding domain superfamily PF553_01695 IPR000551 MerR-type HTH domain PF553_01715 IPR020613 Thiolase, conserved site PF553_01715 IPR020617 Thiolase, C-terminal PF553_01715 IPR020610 Thiolase, active site PF553_01715 IPR016039 Thiolase-like PF553_01715 IPR020615 Thiolase, acyl-enzyme intermediate active site PF553_01715 IPR012805 Acetyl-CoA C-acyltransferase FadA PF553_01715 IPR020616 Thiolase, N-terminal PF553_01715 IPR002155 Thiolase PF553_01720 IPR029045 ClpP/crotonase-like domain superfamily PF553_01720 IPR018376 Enoyl-CoA hydratase/isomerase, conserved site PF553_01720 IPR001753 Enoyl-CoA hydratase/isomerase PF553_01720 IPR006108 3-hydroxyacyl-CoA dehydrogenase, C-terminal PF553_01720 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily PF553_01720 IPR006180 3-hydroxyacyl-CoA dehydrogenase, conserved site PF553_01720 IPR036291 NAD(P)-binding domain superfamily PF553_01720 IPR006176 3-hydroxyacyl-CoA dehydrogenase, NAD binding PF553_01720 IPR012799 Fatty oxidation complex, alpha subunit FadB PF553_01735 IPR036876 UVR domain superfamily PF553_01735 IPR001943 UVR domain PF553_01735 IPR004791 UvrABC system, subunit C PF553_01735 IPR010994 RuvA domain 2-like PF553_01735 IPR038476 UvrC homology region 2 superfamily PF553_01735 IPR000305 GIY-YIG endonuclease PF553_01735 IPR001162 UvrC family homology region PF553_01735 IPR003583 Helix-hairpin-helix DNA-binding motif, class 1 PF553_01735 IPR035901 GIY-YIG endonuclease superfamily PF553_01745 IPR004570 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase PF553_01745 IPR023762 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase, bacterial PF553_01745 IPR000462 CDP-alcohol phosphatidyltransferase PF553_01750 IPR036631 Methylated DNA-protein cysteine methyltransferase domain superfamily PF553_01750 IPR016221 Bifunctional regulatory protein Ada PF553_01750 IPR004026 Ada DNA repair, metal-binding PF553_01750 IPR036388 Winged helix-like DNA-binding domain superfamily PF553_01750 IPR035451 Ada-like domain superfamily PF553_01750 IPR008332 Methylguanine DNA methyltransferase, ribonuclease-like domain PF553_01750 IPR014048 Methylated-DNA-[protein]-cysteine S-methyltransferase, DNA binding PF553_01750 IPR036217 Methylated DNA-protein cysteine methyltransferase, DNA binding domain PF553_01750 IPR018060 DNA binding HTH domain, AraC-type PF553_01750 IPR018062 HTH domain AraC-type, conserved site PF553_01750 IPR009057 Homeobox-like domain superfamily PF553_01750 IPR001497 Methylated-DNA-[protein]-cysteine S-methyltransferase, active site PF553_01775 IPR006143 RND efflux pump, membrane fusion protein PF553_01775 IPR022871 Para-hydroxybenzoic acid efflux pump, subunit AaeA PF553_01775 IPR039562 Membrane fusion protein, biotin-lipoyl like domain PF553_01780 IPR037027 YqgF/RNase H-like domain superfamily PF553_01780 IPR005227 Putative pre-16S rRNA nuclease PF553_01780 IPR012337 Ribonuclease H-like superfamily PF553_01780 IPR006641 YqgF/RNase H-like domain PF553_01785 IPR003774 Protein of unknown function UPF0301 PF553_01790 IPR003395 RecF/RecN/SMC, N-terminal PF553_01790 IPR027417 P-loop containing nucleoside triphosphate hydrolase PF553_01790 IPR004604 DNA recombination/repair protein RecN PF553_01800 IPR009664 Pyrimidine/purine nucleoside phosphorylase PF553_01800 IPR014710 RmlC-like jelly roll fold PF553_01800 IPR011051 RmlC-like cupin domain superfamily PF553_01805 IPR004441 RNA methyltransferase TrmH family PF553_01805 IPR029064 50S ribosomal protein L30e-like PF553_01805 IPR029028 Alpha/beta knot methyltransferases PF553_01805 IPR024915 23S rRNA (guanosine-2-O-)-methyltransferase RlmB PF553_01805 IPR029026 tRNA (guanine-N1-)-methyltransferase, N-terminal PF553_01805 IPR001537 tRNA/rRNA methyltransferase, SpoU type PF553_01805 IPR013123 RNA 2-O ribose methyltransferase, substrate binding PF553_01815 IPR027417 P-loop containing nucleoside triphosphate hydrolase PF553_01815 IPR001977 Dephospho-CoA kinase PF553_01820 IPR014032 Peptidase A24A, prepilin type IV, bacterial PF553_01820 IPR000045 Prepilin type IV endopeptidase, peptidase domain PF553_01820 IPR010627 Peptidase A24A, N-terminal PF553_01825 IPR003004 GspF/PilC family PF553_01825 IPR018076 Type II secretion system F domain PF553_01825 IPR042094 Type II secretion system F domain superfamily PF553_01825 IPR001992 Type II secretion system conserved site PF553_01830 IPR013374 ATPase, type IV, pilus assembly, PilB PF553_01830 IPR027417 P-loop containing nucleoside triphosphate hydrolase PF553_01830 IPR001482 Type II/IV secretion system protein PF553_01830 IPR037257 General secretory system II, protein E, N-terminal superfamily PF553_01830 IPR042181 Type II secretion system, protein E, N-terminal PF553_01830 IPR007831 General secretory system II, protein E, N-terminal PF553_01835 IPR013785 Aldolase-type TIM barrel PF553_01835 IPR035990 Triosephosphate isomerase superfamily PF553_01835 IPR022896 Triosephosphate isomerase, bacterial/eukaryotic PF553_01835 IPR000652 Triosephosphate isomerase PF553_01835 IPR020861 Triosephosphate isomerase, active site PF553_01840 IPR004692 Preprotein translocase SecG subunit PF553_01860 IPR003728 Ribosome maturation factor RimP PF553_01860 IPR035956 RimP, N-terminal domain superfamily PF553_01860 IPR028989 Ribosome maturation factor RimP, N-terminal PF553_01860 IPR036847 Ribosome maturation factor RimP, C-terminal domain superfamily PF553_01860 IPR028998 Ribosome maturation factor RimP, C-terminal PF553_01865 IPR015946 K homology domain-like, alpha/beta PF553_01865 IPR010213 Transcription termination factor NusA PF553_01865 IPR010995 DNA repair Rad51/transcription factor NusA, alpha-helical PF553_01865 IPR012340 Nucleic acid-binding, OB-fold PF553_01865 IPR025249 KH domain, NusA-like PF553_01865 IPR009019 K homology domain superfamily, prokaryotic type PF553_01865 IPR030842 Transcription termination/antitermination protein NusA, bacterial PF553_01865 IPR036555 NusA, N-terminal domain superfamily PF553_01865 IPR010214 Transcription termination factor NusA, C-terminal duplication PF553_01865 IPR022967 RNA-binding domain, S1 PF553_01865 IPR013735 Transcription factor NusA, N-terminal PF553_01865 IPR003029 S1 domain PF553_01870 IPR009000 Translation protein, beta-barrel domain superfamily PF553_01870 IPR036925 Translation initiation factor IF-2, domain 3 superfamily PF553_01870 IPR009061 Putative DNA-binding domain superfamily PF553_01870 IPR015760 Translation initiation factor IF- 2 PF553_01870 IPR013575 Initiation factor 2 associated domain, bacterial PF553_01870 IPR006847 Translation initiation factor IF-2, N-terminal PF553_01870 IPR023115 Translation initiation factor IF- 2, domain 3 PF553_01870 IPR005225 Small GTP-binding protein domain PF553_01870 IPR027417 P-loop containing nucleoside triphosphate hydrolase PF553_01870 IPR000178 Translation initiation factor aIF-2, bacterial-like PF553_01870 IPR000795 Transcription factor, GTP-binding domain PF553_01875 IPR015946 K homology domain-like, alpha/beta PF553_01875 IPR023799 Ribosome-binding factor A domain superfamily PF553_01875 IPR000238 Ribosome-binding factor A PF553_01880 IPR005133 Na+/H+ antiporter subunit G PF553_01885 IPR007208 Na(+)/H(+) antiporter subunit F-like PF553_01890 IPR002758 Na+/H+ antiporter subunit E PF553_01895 IPR004775 Na(+)/H(+) antiporter subunit D1 PF553_01895 IPR001750 NADH:quinone oxidoreductase/Mrp antiporter, membrane subunit PF553_01900 IPR006673 Mnh complex subunit C1 PF553_01900 IPR039428 NADH-ubiquinone oxidoreductase chain 4L/Mnh complex subunit C1-like PF553_01905 IPR005281 Monovalent cation:proton antiporter, subunit B PF553_01905 IPR025383 Domain of unknown function DUF4040 PF553_01905 IPR007182 Na+/H+ antiporter MnhB subunit-related protein PF553_01905 IPR005663 Monovalent cation proton antiporter subunit A PF553_01905 IPR001750 NADH:quinone oxidoreductase/Mrp antiporter, membrane subunit PF553_01905 IPR001516 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminal PF553_01920 IPR038019 Phosphoribosyl-AMP cyclohydrolase domain superfamily PF553_01920 IPR026660 Phosphoribosyl-AMP cyclohydrolase PF553_01920 IPR002496 Phosphoribosyl-AMP cyclohydrolase domain PF553_01925 IPR002938 FAD-binding domain PF553_01925 IPR036188 FAD/NAD(P)-binding domain superfamily PF553_01930 IPR011009 Protein kinase-like domain superfamily PF553_01930 IPR004147 UbiB domain PF553_01930 IPR010232 Probable protein kinase UbiB PF553_01940 IPR023576 UbiE/COQ5 methyltransferase, conserved site PF553_01940 IPR004033 UbiE/COQ5 methyltransferase PF553_01940 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase PF553_01950 IPR022488 Polyphosphate kinase-2-related PF553_01950 IPR027417 P-loop containing nucleoside triphosphate hydrolase PF553_01960 IPR013986 DExx box DNA helicase domain superfamily PF553_01960 IPR006697 RecBCD enzyme subunit RecC PF553_01960 IPR041500 RecC, C-terminal PF553_01960 IPR011335 Restriction endonuclease type II-like PF553_01960 IPR027417 P-loop containing nucleoside triphosphate hydrolase PF553_01965 IPR014016 UvrD-like helicase, ATP-binding domain PF553_01965 IPR034739 UvrD/AddA helicase, N-terminal PF553_01965 IPR038726 PD-(D/E)XK endonuclease-like domain, AddAB-type PF553_01965 IPR027417 P-loop containing nucleoside triphosphate hydrolase PF553_01965 IPR004586 RecBCD enzyme subunit RecB PF553_01965 IPR014017 UvrD-like DNA helicase, C-terminal PF553_01965 IPR000212 DNA helicase, UvrD/REP type PF553_01965 IPR011604 Exonuclease, phage-type/RecB, C-terminal PF553_01965 IPR011335 Restriction endonuclease type II-like PF553_01970 IPR041851 RecBCD enzyme subunit RecD, N-terminal domain PF553_01970 IPR003593 AAA+ ATPase domain PF553_01970 IPR027417 P-loop containing nucleoside triphosphate hydrolase PF553_01970 IPR006344 RecBCD enzyme subunit RecD PF553_01970 IPR027785 UvrD-like helicase C-terminal domain PF553_01975 IPR012338 Beta-lactamase/transpeptidase-like PF553_01975 IPR001466 Beta-lactamase-related PF553_01980 IPR000589 Ribosomal protein S15 PF553_01980 IPR005290 Ribosomal protein S15, bacterial-type PF553_01980 IPR009068 S15/NS1, RNA-binding PF553_01985 IPR003029 S1 domain PF553_01985 IPR022967 RNA-binding domain, S1 PF553_01985 IPR020568 Ribosomal protein S5 domain 2-type fold PF553_01985 IPR036456 Polyribonucleotide nucleotidyltransferase, RNA-binding domain superfamily PF553_01985 IPR015848 Polyribonucleotide nucleotidyltransferase, RNA-binding domain PF553_01985 IPR012162 Polyribonucleotide nucleotidyltransferase PF553_01985 IPR027408 PNPase/RNase PH domain superfamily PF553_01985 IPR036612 K Homology domain, type 1 superfamily PF553_01985 IPR004088 K Homology domain, type 1 PF553_01985 IPR004087 K Homology domain PF553_01985 IPR036345 Exoribonuclease, PH domain 2 superfamily PF553_01985 IPR015847 Exoribonuclease, phosphorolytic domain 2 PF553_01985 IPR001247 Exoribonuclease, phosphorolytic domain 1 PF553_01985 IPR012340 Nucleic acid-binding, OB-fold PF553_01990 IPR004488 Magnesium/cobalt transport protein CorA PF553_01990 IPR002523 Mg2+ transporter protein, CorA-like/Zinc transport protein ZntB PF553_01995 IPR022835 Chaperone modulatory protein CbpM PF553_02000 IPR036869 Chaperone J-domain superfamily PF553_02000 IPR018253 DnaJ domain, conserved site PF553_02000 IPR008971 HSP40/DnaJ peptide-binding PF553_02000 IPR001623 DnaJ domain PF553_02000 IPR023859 DNA-binding protein, curved-DNA PF553_02000 IPR002939 Chaperone DnaJ, C-terminal PF553_02010 IPR000397 Heat shock protein Hsp33 PF553_02010 IPR016154 Heat shock protein Hsp33, C-terminal PF553_02010 IPR016153 Heat shock protein Hsp33, N-terminal PF553_02010 IPR023212 Heat shock protein Hsp33, helix hairpin bin domain superfamily PF553_02015 IPR006153 Cation/H+ exchanger PF553_02015 IPR004771 K+/H+ exchanger PF553_02015 IPR038770 Sodium/solute symporter superfamily PF553_02015 IPR036291 NAD(P)-binding domain superfamily PF553_02015 IPR003148 Regulator of K+ conductance, N-terminal PF553_02015 IPR020884 Glutathione-regulated potassium-efflux system protein KefB PF553_02020 IPR041222 Primosomal protein N', 3' DNA-binding domain PF553_02020 IPR040498 PriA DNA helicase, Cys-rich region (CRR) domain PF553_02020 IPR041236 Primosomal protein N, C-terminal domain PF553_02020 IPR042115 Primosomal protein N', 3' DNA-binding domain superfamily PF553_02020 IPR005259 Primosomal protein N' PF553_02020 IPR001650 Helicase, C-terminal PF553_02020 IPR011545 DEAD/DEAH box helicase domain PF553_02020 IPR027417 P-loop containing nucleoside triphosphate hydrolase PF553_02020 IPR014001 Helicase superfamily 1/2, ATP-binding domain PF553_02025 IPR003004 GspF/PilC family PF553_02025 IPR011850 General secretion pathway protein F PF553_02025 IPR001992 Type II secretion system conserved site PF553_02025 IPR018076 Type II secretion system F domain PF553_02025 IPR042094 Type II secretion system F domain superfamily PF553_02030 IPR010054 General secretion pathway protein G PF553_02030 IPR013545 Type II secretion system protein G PF553_02030 IPR000983 Bacterial general secretion pathway protein G-type pilin PF553_02030 IPR012902 Prokaryotic N-terminal methylation site PF553_02040 IPR008231 Probable chaperone CsaA PF553_02040 IPR012340 Nucleic acid-binding, OB-fold PF553_02040 IPR002547 tRNA-binding domain PF553_02045 IPR004563 Apolipoprotein N-acyltransferase PF553_02045 IPR003010 Carbon-nitrogen hydrolase PF553_02045 IPR036526 Carbon-nitrogen hydrolase superfamily PF553_02050 IPR000644 CBS domain PF553_02050 IPR036318 FAD-binding, type PCMH-like superfamily PF553_02050 IPR016169 FAD-binding, type PCMH, subdomain 2 PF553_02050 IPR005170 Transporter-associated domain PF553_02055 IPR022931 Sulfur carrier protein TusA PF553_02055 IPR001455 TusA-like domain PF553_02055 IPR036868 TusA-like domain superfamily PF553_02065 IPR036188 FAD/NAD(P)-binding domain superfamily PF553_02065 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain PF553_02065 IPR040156 Electron transfer flavoprotein-ubiquinone oxidoreductase PF553_02075 IPR015942 Asp/Glu/hydantoin racemase PF553_02075 IPR001920 Asp/Glu racemase PF553_02075 IPR018187 Asp/Glu racemase, active site 1 PF553_02075 IPR033134 Asp/Glu racemase, active site 2 PF553_02075 IPR004391 Glutamate racemase PF553_02085 IPR001015 Ferrochelatase PF553_02085 IPR019772 Ferrochelatase, active site PF553_02085 IPR033644 Ferrochelatase, C-terminal PF553_02085 IPR033659 Ferrochelatase, N-terminal PF553_02090 IPR001279 Metallo-beta-lactamase PF553_02090 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like PF553_02095 IPR005584 DNA gyrase inhibitor YacG PF553_02095 IPR013088 Zinc finger, NHR/GATA-type PF553_02105 IPR036188 FAD/NAD(P)-binding domain superfamily PF553_02105 IPR023753 FAD/NAD(P)-binding domain PF553_02105 IPR006006 Glutamate synthase, NADH/NADPH, small subunit 2 PF553_02105 IPR009051 Alpha-helical ferredoxin PF553_02105 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site PF553_02105 IPR028261 Dihydroprymidine dehydrogenase domain II PF553_02105 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain PF553_02115 IPR003691 Putative fluoride ion transporter CrcB PF553_02130 IPR009057 Homeobox-like domain superfamily PF553_02140 IPR024463 Transposase TnpC, homeodomain PF553_02140 IPR004291 Transposase, IS66 PF553_02140 IPR039552 Transposase IS66, C-terminal PF553_02140 IPR024474 Zinc-finger binding domain of transposase IS66 PF553_02150 IPR039552 Transposase IS66, C-terminal PF553_02150 IPR004291 Transposase, IS66 PF553_02150 IPR024474 Zinc-finger binding domain of transposase IS66 PF553_02150 IPR024463 Transposase TnpC, homeodomain PF553_02160 IPR009057 Homeobox-like domain superfamily PF553_02170 IPR011009 Protein kinase-like domain superfamily PF553_02170 IPR004147 UbiB domain PF553_02170 IPR000719 Protein kinase domain PF553_02175 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily PF553_02175 IPR013107 Acyl-CoA dehydrogenase, C-terminal domain PF553_02175 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal PF553_02175 IPR037069 Acyl-CoA dehydrogenase/oxidase, N-terminal domain superfamily PF553_02175 IPR036250 Acyl-CoA dehydrogenase-like, C-terminal PF553_02180 IPR006091 Acyl-CoA oxidase/dehydrogenase, central domain PF553_02180 IPR037069 Acyl-CoA dehydrogenase/oxidase, N-terminal domain superfamily PF553_02180 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily PF553_02180 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal PF553_02180 IPR013107 Acyl-CoA dehydrogenase, C-terminal domain PF553_02180 IPR036250 Acyl-CoA dehydrogenase-like, C-terminal PF553_02185 IPR002528 Multi antimicrobial extrusion protein PF553_02195 IPR023404 Radical SAM, alpha/beta horseshoe PF553_02195 IPR034505 Anaerobic coproporphyrinogen-III oxidase PF553_02195 IPR006638 Elp3/MiaB/NifB PF553_02195 IPR010723 HemN, C-terminal PF553_02195 IPR004559 Heme chaperone HemW-like PF553_02195 IPR007197 Radical SAM PF553_02205 IPR009057 Homeobox-like domain superfamily PF553_02215 IPR039552 Transposase IS66, C-terminal PF553_02215 IPR024463 Transposase TnpC, homeodomain PF553_02215 IPR004291 Transposase, IS66 PF553_02215 IPR024474 Zinc-finger binding domain of transposase IS66 PF553_02225 IPR005119 LysR, substrate-binding PF553_02225 IPR000847 Transcription regulator HTH, LysR PF553_02225 IPR036388 Winged helix-like DNA-binding domain superfamily PF553_02225 IPR036390 Winged helix DNA-binding domain superfamily PF553_02240 IPR025110 AMP-binding enzyme, C-terminal domain PF553_02240 IPR020845 AMP-binding, conserved site PF553_02240 IPR000873 AMP-dependent synthetase/ligase PF553_02240 IPR042099 AMP-dependent synthetase-like superfamily PF553_02240 IPR030310 Long-chain-fatty-acid--CoA ligase FadD17 PF553_02245 IPR003029 S1 domain PF553_02245 IPR004659 Ribonuclease E/G PF553_02245 IPR022967 RNA-binding domain, S1 PF553_02245 IPR019307 RNA-binding protein AU-1/Ribonuclease E/G PF553_02245 IPR012340 Nucleic acid-binding, OB-fold PF553_02245 IPR028878 Ribonuclease E PF553_02245 IPR021968 Polyribonucleotide phosphorylase C-terminal PF553_02250 IPR020103 Pseudouridine synthase, catalytic domain superfamily PF553_02250 IPR006225 Pseudouridine synthase, RluC/RluD PF553_02250 IPR006224 Pseudouridine synthase, RluC/RluD, conserved site PF553_02250 IPR006145 Pseudouridine synthase, RsuA/RluA PF553_02250 IPR002942 RNA-binding S4 domain PF553_02250 IPR036986 RNA-binding S4 domain superfamily PF553_02255 IPR036412 HAD-like superfamily PF553_02255 IPR006439 HAD hydrolase, subfamily IA PF553_02255 IPR041492 Haloacid dehalogenase-like hydrolase PF553_02255 IPR023214 HAD superfamily PF553_02255 IPR023198 Phosphoglycolate phosphatase-like, domain 2 PF553_02255 IPR023733 Pyrophosphatase PpaX PF553_02260 IPR036388 Winged helix-like DNA-binding domain superfamily PF553_02260 IPR026881 WYL domain PF553_02260 IPR028349 Protein PafC PF553_02260 IPR013196 Helix-turn-helix, type 11 PF553_02260 IPR001034 DeoR-type HTH domain PF553_02260 IPR036390 Winged helix DNA-binding domain superfamily PF553_02265 IPR036249 Thioredoxin-like superfamily PF553_02265 IPR004045 Glutathione S-transferase, N-terminal PF553_02265 IPR040079 Glutathione Transferase family PF553_02265 IPR036282 Glutathione S-transferase, C-terminal domain superfamily PF553_02265 IPR010987 Glutathione S-transferase, C-terminal-like PF553_02275 IPR005119 LysR, substrate-binding PF553_02275 IPR000847 Transcription regulator HTH, LysR PF553_02275 IPR036388 Winged helix-like DNA-binding domain superfamily PF553_02275 IPR036390 Winged helix DNA-binding domain superfamily PF553_02280 IPR001279 Metallo-beta-lactamase PF553_02280 IPR024884 N-acyl-phosphatidylethanolamine-hydrolysing phospholipase D PF553_02280 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like PF553_02285 IPR019794 Peroxidase, active site PF553_02285 IPR010255 Haem peroxidase superfamily PF553_02285 IPR000763 Catalase-peroxidase haem PF553_02285 IPR002016 Haem peroxidase PF553_02290 IPR003018 GAF domain PF553_02290 IPR029016 GAF-like domain superfamily PF553_02290 IPR008279 PEP-utilising enzyme, mobile domain PF553_02290 IPR018274 PEP-utilising enzyme, active site PF553_02290 IPR000121 PEP-utilising enzyme, C-terminal PF553_02290 IPR023151 PEP-utilising enzyme, conserved site PF553_02290 IPR036637 Phosphohistidine domain superfamily PF553_02290 IPR006318 Phosphotransferase system, enzyme I-like PF553_02290 IPR008731 Phosphotransferase system, enzyme I N-terminal PF553_02290 IPR036618 PtsI, HPr-binding domain superfamily PF553_02290 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain superfamily PF553_02290 IPR040442 Pyruvate kinase-like domain superfamily PF553_02295 IPR000086 NUDIX hydrolase domain PF553_02295 IPR020084 NUDIX hydrolase, conserved site PF553_02295 IPR022927 RNA pyrophosphohydrolase RppH PF553_02295 IPR020476 NUDIX hydrolase PF553_02295 IPR015797 NUDIX hydrolase-like domain superfamily PF553_02315 IPR005119 LysR, substrate-binding PF553_02315 IPR000847 Transcription regulator HTH, LysR PF553_02315 IPR036390 Winged helix DNA-binding domain superfamily PF553_02315 IPR036388 Winged helix-like DNA-binding domain superfamily PF553_02325 IPR033941 3-Isopropylmalate dehydratase, catalytic domain PF553_02325 IPR018136 Aconitase family, 4Fe-4S cluster binding site PF553_02325 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain PF553_02325 IPR015931 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha, subdomain 1/3 PF553_02325 IPR004430 3-isopropylmalate dehydratase, large subunit PF553_02325 IPR036008 Aconitase, iron-sulfur domain PF553_02330 IPR004431 3-isopropylmalate dehydratase, small subunit PF553_02330 IPR033940 3-isopropylmalate dehydratase, swivel domain PF553_02330 IPR015928 Aconitase/3-isopropylmalate dehydratase, swivel PF553_02330 IPR000573 Aconitase A/isopropylmalate dehydratase small subunit, swivel domain PF553_02340 IPR024084 Isopropylmalate dehydrogenase-like domain PF553_02340 IPR004429 Isopropylmalate dehydrogenase PF553_02340 IPR019818 Isocitrate/isopropylmalate dehydrogenase, conserved site PF553_02355 IPR012340 Nucleic acid-binding, OB-fold PF553_02355 IPR006196 RNA-binding domain, S1, IF1 type PF553_02355 IPR022967 RNA-binding domain, S1 PF553_02355 IPR004368 Translation initiation factor IF-1 PF553_02365 IPR001406 Pseudouridine synthase I, TruA PF553_02365 IPR020095 Pseudouridine synthase I, TruA, C-terminal PF553_02365 IPR020097 Pseudouridine synthase I, TruA, alpha/beta domain PF553_02365 IPR020103 Pseudouridine synthase, catalytic domain superfamily PF553_02385 IPR012080 Aspartate-semialdehyde dehydrogenase PF553_02385 IPR036291 NAD(P)-binding domain superfamily PF553_02385 IPR000534 Semialdehyde dehydrogenase, NAD-binding PF553_02385 IPR012280 Semialdehyde dehydrogenase, dimerisation domain PF553_02385 IPR011534 Aspartate-semialdehyde dehydrogenase, gamma-type PF553_02385 IPR000319 Aspartate-semialdehyde dehydrogenase, conserved site PF553_02395 IPR033380 Glutamate-aspartate symport protein GltP/GltT PF553_02395 IPR036458 Sodium:dicarboxylate symporter superfamily PF553_02395 IPR018107 Sodium:dicarboxylate symporter, conserved site PF553_02395 IPR001991 Sodium:dicarboxylate symporter PF553_02395 IPR034703 Proton/glutamate-aspartate symporter GltP PF553_02405 IPR004960 Bacterial lipid A biosynthesis acyltransferase PF553_02405 IPR011920 Lipid A biosynthesis lauroyl (or palmitoleoyl) acyltransferase PF553_02410 IPR001123 Amino acid exporter protein, LeuE-type PF553_02410 IPR004778 Homoserine/Threonine efflux protein PF553_02415 IPR003439 ABC transporter-like PF553_02415 IPR017871 ABC transporter, conserved site PF553_02415 IPR037118 Valyl-tRNA synthetase, tRNA-binding arm superfamily PF553_02415 IPR032524 ABC transporter Uup, C-terminal PF553_02415 IPR003593 AAA+ ATPase domain PF553_02415 IPR032781 ABC-transporter extension domain PF553_02415 IPR027417 P-loop containing nucleoside triphosphate hydrolase PF553_02420 IPR007236 SlyX PF553_02425 IPR002364 Quinone oxidoreductase/zeta-crystallin, conserved site PF553_02425 IPR020843 Polyketide synthase, enoylreductase domain PF553_02425 IPR013149 Alcohol dehydrogenase, C-terminal PF553_02425 IPR013154 Alcohol dehydrogenase, N-terminal PF553_02425 IPR014182 Alcohol dehydrogenase, zinc-binding type 1 PF553_02425 IPR036291 NAD(P)-binding domain superfamily PF553_02425 IPR011032 GroES-like superfamily PF553_02430 IPR002577 Helix-turn-helix, HxlR type PF553_02430 IPR036388 Winged helix-like DNA-binding domain superfamily PF553_02430 IPR036390 Winged helix DNA-binding domain superfamily PF553_02440 IPR034149 DNA topoisomerase 1, TOPRIM domain PF553_02440 IPR006171 TOPRIM domain PF553_02440 IPR028612 DNA topoisomerase I, type IA PF553_02440 IPR013263 DNA topoisomerase I, zinc ribbon-like, bacterial-type PF553_02440 IPR005733 DNA topoisomerase I, bacterial-type PF553_02440 IPR013498 DNA topoisomerase, type IA, zn finger PF553_02440 IPR023405 DNA topoisomerase, type IA, core domain PF553_02440 IPR013826 DNA topoisomerase, type IA, central region, subdomain 3 PF553_02440 IPR013825 DNA topoisomerase, type IA, central region, subdomain 2 PF553_02440 IPR013824 DNA topoisomerase, type IA, central region, subdomain 1 PF553_02440 IPR000380 DNA topoisomerase, type IA PF553_02440 IPR003601 DNA topoisomerase, type IA, domain 2 PF553_02440 IPR003602 DNA topoisomerase, type IA, DNA-binding domain PF553_02440 IPR013497 DNA topoisomerase, type IA, central PF553_02440 IPR023406 DNA topoisomerase, type IA, active site PF553_02455 IPR034739 UvrD/AddA helicase, N-terminal PF553_02455 IPR000212 DNA helicase, UvrD/REP type PF553_02455 IPR027417 P-loop containing nucleoside triphosphate hydrolase PF553_02455 IPR005751 ATP-dependent DNA helicase PcrA PF553_02455 IPR014016 UvrD-like helicase, ATP-binding domain PF553_02455 IPR013986 DExx box DNA helicase domain superfamily PF553_02455 IPR014017 UvrD-like DNA helicase, C-terminal PF553_02460 IPR035979 RNA-binding domain superfamily PF553_02460 IPR012677 Nucleotide-binding alpha-beta plait domain superfamily PF553_02460 IPR000504 RNA recognition motif domain PF553_02480 IPR006153 Cation/H+ exchanger PF553_02480 IPR004771 K+/H+ exchanger PF553_02480 IPR038770 Sodium/solute symporter superfamily PF553_02480 IPR036291 NAD(P)-binding domain superfamily PF553_02480 IPR003148 Regulator of K+ conductance, N-terminal PF553_02485 IPR038584 Ribosomal protein L33 superfamily PF553_02485 IPR001705 Ribosomal protein L33 PF553_02485 IPR018264 Ribosomal protein L33, conserved site PF553_02485 IPR011332 Zinc-binding ribosomal protein PF553_02490 IPR026569 Ribosomal protein L28/L24 PF553_02490 IPR034704 L28p-like PF553_02490 IPR037147 Ribosomal protein L28/L24 superfamily PF553_02490 IPR001383 Ribosomal protein L28 PF553_02495 IPR016161 Aldehyde/histidinol dehydrogenase PF553_02495 IPR016163 Aldehyde dehydrogenase, C-terminal PF553_02495 IPR029510 Aldehyde dehydrogenase, glutamic acid active site PF553_02495 IPR016162 Aldehyde dehydrogenase, N-terminal PF553_02495 IPR015590 Aldehyde dehydrogenase domain PF553_02495 IPR012394 Aldehyde dehydrogenase NAD(P)-dependent PF553_02505 IPR002912 ACT domain PF553_02505 IPR041729 Formyltetrahydrofolate deformylase, C-terminal hydrolase domain PF553_02505 IPR002376 Formyl transferase, N-terminal PF553_02505 IPR036477 Formyl transferase, N-terminal domain superfamily PF553_02505 IPR004810 Formyltetrahydrofolate deformylase PF553_02515 IPR002898 MotA/TolQ/ExbB proton channel PF553_02525 IPR002569 Peptide methionine sulphoxide reductase MsrA PF553_02525 IPR036509 Peptide methionine sulphoxide reductase MsrA superfamily PF553_02535 IPR001796 Dihydrofolate reductase domain PF553_02535 IPR017925 Dihydrofolate reductase conserved site PF553_02535 IPR012259 Dihydrofolate reductase PF553_02535 IPR024072 Dihydrofolate reductase-like domain superfamily PF553_02540 IPR023451 Thymidylate synthase/dCMP hydroxymethylase domain PF553_02540 IPR036926 Thymidylate synthase/dCMP hydroxymethylase superfamily PF553_02540 IPR000398 Thymidylate synthase PF553_02540 IPR020940 Thymidylate synthase, active site PF553_02555 IPR001640 Phosphatidylglycerol--prolipoprotein diacylglyceryl transferase Lgt PF553_02575 IPR019820 Sec-independent periplasmic protein translocase, conserved site PF553_02575 IPR002033 Sec-independent periplasmic protein translocase TatC PF553_02580 IPR003369 Sec-independent protein translocase protein TatA/B/E PF553_02580 IPR018448 Twin-arginine translocation protein TatB PF553_02585 IPR003369 Sec-independent protein translocase protein TatA/B/E PF553_02585 IPR006312 Sec-independent protein translocase protein TatA/E PF553_02595 IPR002637 Ham1-like protein PF553_02595 IPR020922 dITP/XTP pyrophosphatase PF553_02595 IPR029001 Inosine triphosphate pyrophosphatase-like PF553_02605 IPR029058 Alpha/Beta hydrolase fold PF553_02605 IPR000073 Alpha/beta hydrolase fold-1 PF553_02605 IPR008220 Homoserine/serine acetyltransferase MetX-like PF553_02605 IPR010743 Methionine biosynthesis MetW PF553_02605 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase PF553_02610 IPR029058 Alpha/Beta hydrolase fold PF553_02610 IPR000073 Alpha/beta hydrolase fold-1 PF553_02610 IPR008220 Homoserine/serine acetyltransferase MetX-like PF553_02615 IPR039371 LeuA, N-terminal catalytic TIM barrel domain PF553_02615 IPR036230 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain superfamily PF553_02615 IPR000891 Pyruvate carboxyltransferase PF553_02615 IPR013785 Aldolase-type TIM barrel PF553_02615 IPR002034 Alpha-isopropylmalate/homocitrate synthase, conserved site PF553_02615 IPR005668 2-isopropylmalate synthase PF553_02615 IPR013709 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain PF553_02620 IPR005123 Oxoglutarate/iron-dependent dioxygenase PF553_02620 IPR041097 PKHD-type hydroxylase C-terminal domain PF553_02620 IPR023550 PKHD-type hydroxylase PF553_02620 IPR006620 Prolyl 4-hydroxylase, alpha subunit PF553_02625 IPR010105 TonB-dependent siderophore receptor PF553_02625 IPR036942 TonB-dependent receptor-like, beta-barrel domain superfamily PF553_02625 IPR039423 TonB-dependent receptor-like PF553_02625 IPR037066 TonB-dependent receptor, plug domain superfamily PF553_02625 IPR012910 TonB-dependent receptor, plug domain PF553_02625 IPR000531 TonB-dependent receptor-like, beta-barrel PF553_02625 IPR030148 Catecholate siderophore receptor Fiu PF553_02630 IPR001179 FKBP-type peptidyl-prolyl cis-trans isomerase domain PF553_02630 IPR005215 Trigger factor PF553_02630 IPR008880 Trigger factor, C-terminal PF553_02630 IPR037041 Trigger factor, C-terminal domain superfamily PF553_02630 IPR008881 Trigger factor, ribosome-binding, bacterial PF553_02630 IPR036611 Trigger factor ribosome-binding domain superfamily PF553_02630 IPR027304 Trigger factor/SurA domain superfamily PF553_02635 IPR018215 ClpP, Ser active site PF553_02635 IPR033135 ClpP, histidine active site PF553_02635 IPR029045 ClpP/crotonase-like domain superfamily PF553_02635 IPR023562 Clp protease proteolytic subunit /Translocation-enhancing protein TepA PF553_02635 IPR001907 ATP-dependent Clp protease proteolytic subunit PF553_02640 IPR038366 Zinc finger, ClpX C4-type superfamily PF553_02640 IPR010603 Zinc finger, ClpX C4-type PF553_02640 IPR004487 Clp protease, ATP-binding subunit ClpX PF553_02640 IPR019489 Clp ATPase, C-terminal PF553_02640 IPR003959 ATPase, AAA-type, core PF553_02640 IPR027417 P-loop containing nucleoside triphosphate hydrolase PF553_02640 IPR003593 AAA+ ATPase domain PF553_02655 IPR020557 Fumarate lyase, conserved site PF553_02655 IPR011167 Iron-dependent fumarate hydratase PF553_02655 IPR004647 Fe-S hydro-lyase, tartrate dehydratase beta-type, catalytic domain PF553_02655 IPR004646 Fe-S hydro-lyase, tartrate dehydratase alpha-type, catalytic domain PF553_02655 IPR036660 Fe-S hydro-lyase, tartrate dehydratase beta-type, catalytic domain superfamily PF553_02660 IPR010766 DRTGG PF553_02660 IPR027417 P-loop containing nucleoside triphosphate hydrolase PF553_02660 IPR004614 Phosphate acetyltransferase PF553_02660 IPR042113 Phosphate acetyltransferase, domain 1 PF553_02660 IPR042112 Phosphate acetyltransferase, domain 2 PF553_02660 IPR002505 Phosphate acetyl/butaryl transferase PF553_02660 IPR028979 HPr(Ser) kinase/phosphorylase-like, N-terminal domain superfamily PF553_02660 IPR016475 Phosphate acetyltransferase, bacteria PF553_02665 IPR004372 Acetate/propionate kinase PF553_02665 IPR000890 Aliphatic acid kinase, short-chain PF553_02665 IPR023865 Aliphatic acid kinase, short-chain, conserved site PF553_02670 IPR020558 Dihydroxy-acid/6-phosphogluconate dehydratase, conserved site PF553_02670 IPR004786 6-phosphogluconate dehydratase PF553_02670 IPR042096 Dihydroxy-acid dehydratase, C-terminal PF553_02670 IPR000581 Dihydroxy-acid/6-phosphogluconate dehydratase PF553_02670 IPR037237 IlvD/EDD, N-terminal domain PF553_02675 IPR031338 KDPG/KHG aldolase, active site 2 PF553_02675 IPR031337 KDPG/KHG aldolase, active site 1 PF553_02675 IPR013785 Aldolase-type TIM barrel PF553_02675 IPR000887 KDPG/KHG aldolase PF553_02680 IPR003474 Gluconate transporter PF553_02685 IPR027417 P-loop containing nucleoside triphosphate hydrolase PF553_02685 IPR031322 Shikimate kinase/gluconokinase PF553_02685 IPR006001 Carbohydrate kinase, thermoresistant glucokinase PF553_02690 IPR016162 Aldehyde dehydrogenase, N-terminal PF553_02690 IPR015590 Aldehyde dehydrogenase domain PF553_02690 IPR016163 Aldehyde dehydrogenase, C-terminal PF553_02690 IPR016160 Aldehyde dehydrogenase, cysteine active site PF553_02690 IPR016161 Aldehyde/histidinol dehydrogenase PF553_02695 IPR020593 Gamma-glutamyl phosphate reductase GPR, conserved site PF553_02695 IPR000965 GPR domain PF553_02695 IPR016161 Aldehyde/histidinol dehydrogenase PF553_02695 IPR016163 Aldehyde dehydrogenase, C-terminal PF553_02695 IPR016162 Aldehyde dehydrogenase, N-terminal PF553_02695 IPR015590 Aldehyde dehydrogenase domain PF553_02695 IPR012134 Glutamate-5-semialdehyde dehydrogenase PF553_02700 IPR029058 Alpha/Beta hydrolase fold PF553_02700 IPR000073 Alpha/beta hydrolase fold-1 PF553_02700 IPR023791 2-hydroxy-6-oxononadienedioate/2-hydroxy-6-oxononatrienedioate hydrolase PF553_02700 IPR000639 Epoxide hydrolase-like PF553_02710 IPR017853 Glycoside hydrolase superfamily PF553_02710 IPR036962 Glycoside hydrolase, family 3, N-terminal domain superfamily PF553_02710 IPR001764 Glycoside hydrolase, family 3, N-terminal PF553_02710 IPR019800 Glycoside hydrolase, family 3, active site PF553_02710 IPR022956 Beta-hexosaminidase, bacterial PF553_02715 IPR005151 Tail specific protease PF553_02715 IPR001478 PDZ domain PF553_02715 IPR020992 Tail specific protease, C-terminal PF553_02715 IPR029045 ClpP/crotonase-like domain superfamily PF553_02715 IPR040573 Tail specific protease, N-terminal domain PF553_02715 IPR004447 C-terminal-processing peptidase S41A PF553_02715 IPR036034 PDZ superfamily PF553_02720 IPR028098 Glycosyltransferase subfamily 4-like, N-terminal domain PF553_02720 IPR001296 Glycosyl transferase, family 1 PF553_02725 IPR036938 Phosphatidic acid phosphatase type 2/haloperoxidase superfamily PF553_02725 IPR000326 Phosphatidic acid phosphatase type 2/haloperoxidase PF553_02730 IPR007479 ISC system FeS cluster assembly, IscX PF553_02730 IPR036762 IscX-like superfamily PF553_02735 IPR023005 Nucleoside diphosphate kinase, active site PF553_02735 IPR034907 Nucleoside diphosphate kinase-like domain PF553_02735 IPR036850 Nucleoside diphosphate kinase-like domain superfamily PF553_02735 IPR001564 Nucleoside diphosphate kinase PF553_02740 IPR027492 Dual-specificity RNA methyltransferase RlmN PF553_02740 IPR004383 Ribosomal RNA large subunit methyltransferase RlmN/Cfr PF553_02740 IPR007197 Radical SAM PF553_02740 IPR040072 Methyltransferase (Class A) PF553_02740 IPR013785 Aldolase-type TIM barrel PF553_02745 IPR013026 Tetratricopeptide repeat-containing domain PF553_02745 IPR011990 Tetratricopeptide-like helical domain superfamily PF553_02745 IPR013360 Pilus biogenesis/stability type IV, PilW PF553_02745 IPR019734 Tetratricopeptide repeat PF553_02750 IPR010982 Lambda repressor-like, DNA-binding domain superfamily PF553_02750 IPR001387 Cro/C1-type helix-turn-helix domain PF553_02750 IPR025194 Domain of unknown function DUF4115 PF553_02755 IPR004588 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase, bacterial-type PF553_02755 IPR011005 Dihydropteroate synthase-like PF553_02755 IPR016425 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase, bacterial PF553_02760 IPR004516 Histidine-tRNA ligase/ATP phosphoribosyltransferase regulatory subunit PF553_02760 IPR006195 Aminoacyl-tRNA synthetase, class II PF553_02760 IPR004154 Anticodon-binding PF553_02760 IPR036621 Anticodon-binding domain superfamily PF553_02760 IPR015807 Histidine-tRNA ligase PF553_02760 IPR041715 Class II Histidinyl-tRNA synthetase (HisRS)-like catalytic core domain PF553_02770 IPR017687 Outer membrane protein assembly factor BamB PF553_02770 IPR018391 Pyrrolo-quinoline quinone beta-propeller repeat PF553_02770 IPR002372 Pyrrolo-quinoline quinone repeat PF553_02770 IPR011047 Quinoprotein alcohol dehydrogenase-like superfamily PF553_02770 IPR015943 WD40/YVTN repeat-like-containing domain superfamily PF553_02775 IPR005225 Small GTP-binding protein domain PF553_02775 IPR027417 P-loop containing nucleoside triphosphate hydrolase PF553_02775 IPR015946 K homology domain-like, alpha/beta PF553_02775 IPR032859 GTPase Der, C-terminal KH-domain-like PF553_02775 IPR006073 GTP binding domain PF553_02775 IPR031166 EngA-type guanine nucleotide-binding (G) domain PF553_02775 IPR016484 GTP-binding protein EngA PF553_02785 IPR035958 SecB-like superfamily PF553_02785 IPR003708 Bacterial protein export chaperone SecB PF553_02790 IPR014025 Glutaredoxin subgroup PF553_02790 IPR011900 Glutaredoxin, GrxC PF553_02790 IPR011767 Glutaredoxin active site PF553_02790 IPR002109 Glutaredoxin PF553_02790 IPR036249 Thioredoxin-like superfamily PF553_02800 IPR030378 Circularly permuted (CP)-type guanine nucleotide-binding (G) domain PF553_02800 IPR012340 Nucleic acid-binding, OB-fold PF553_02800 IPR027417 P-loop containing nucleoside triphosphate hydrolase PF553_02800 IPR004881 Ribosome biogenesis GTPase RsgA PF553_02800 IPR010914 RsgA GTPase domain PF553_02805 IPR036397 Ribonuclease H superfamily PF553_02805 IPR013520 Exonuclease, RNase T/DNA polymerase III PF553_02805 IPR022894 Oligoribonuclease PF553_02805 IPR012337 Ribonuclease H-like superfamily PF553_02815 IPR002347 Short-chain dehydrogenase/reductase SDR PF553_02815 IPR014358 Enoyl-[acyl-carrier-protein] reductase (NADH) PF553_02815 IPR036291 NAD(P)-binding domain superfamily PF553_02820 IPR003423 Outer membrane efflux protein PF553_02820 IPR010131 RND efflux system, outer membrane lipoprotein, NodT PF553_02825 IPR003838 ABC transporter permease protein domain PF553_02825 IPR003593 AAA+ ATPase domain PF553_02825 IPR003439 ABC transporter-like PF553_02825 IPR027417 P-loop containing nucleoside triphosphate hydrolase PF553_02825 IPR025857 MacB-like periplasmic core domain PF553_02825 IPR017911 ABC transporter, macrolide export, ATP-binding domain PF553_02825 IPR017871 ABC transporter, conserved site PF553_02830 IPR032317 RND efflux pump, membrane fusion protein, barrel-sandwich domain PF553_02830 IPR006143 RND efflux pump, membrane fusion protein PF553_02830 IPR030190 Macrolide export protein MacA PF553_02845 IPR009008 Valyl/Leucyl/Isoleucyl-tRNA synthetase, editing domain PF553_02845 IPR002300 Aminoacyl-tRNA synthetase, class Ia PF553_02845 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold PF553_02845 IPR015413 Methionyl/Leucyl tRNA synthetase PF553_02845 IPR009080 Aminoacyl-tRNA synthetase, class Ia, anticodon-binding PF553_02845 IPR025709 Leucyl-tRNA synthetase, editing domain PF553_02845 IPR002302 Leucine-tRNA ligase PF553_02845 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site PF553_02845 IPR013155 Methionyl/Valyl/Leucyl/Isoleucyl-tRNA synthetase, anticodon-binding PF553_02855 IPR029035 DHS-like NAD/FAD-binding domain superfamily PF553_02855 IPR039368 Acetolactate synthase large subunit, TPP binding domain PF553_02855 IPR011766 Thiamine pyrophosphate enzyme, C-terminal TPP-binding PF553_02855 IPR012846 Acetolactate synthase, large subunit, biosynthetic PF553_02855 IPR000399 TPP-binding enzyme, conserved site PF553_02855 IPR012001 Thiamine pyrophosphate enzyme, N-terminal TPP-binding domain PF553_02855 IPR029061 Thiamin diphosphate-binding fold PF553_02855 IPR012000 Thiamine pyrophosphate enzyme, central domain PF553_02860 IPR039557 AHAS, ACT domain PF553_02860 IPR019455 Acetolactate synthase, small subunit, C-terminal PF553_02860 IPR004789 Acetolactate synthase, small subunit PF553_02860 IPR002912 ACT domain PF553_02860 IPR027271 Acetolactate synthase/Transcription factor NikR, C-terminal PF553_02865 IPR000506 Ketol-acid reductoisomerase, C-terminal PF553_02865 IPR013116 Ketol-acid reductoisomerase, N-terminal PF553_02865 IPR014359 Ketol-acid reductoisomerase, prokaryotic PF553_02865 IPR036291 NAD(P)-binding domain superfamily PF553_02865 IPR013023 Ketol-acid reductoisomerase PF553_02865 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily PF553_02890 IPR004161 Translation elongation factor EFTu-like, domain 2 PF553_02890 IPR000795 Transcription factor, GTP-binding domain PF553_02890 IPR027417 P-loop containing nucleoside triphosphate hydrolase PF553_02890 IPR038467 Peptide chain release factor 3, C-terminal domain superfamily PF553_02890 IPR031157 Tr-type G domain, conserved site PF553_02890 IPR035647 EF-G domain III/V-like PF553_02890 IPR004548 Peptide chain release factor 3 PF553_02890 IPR032090 Peptide chain release factor 3, C-terminal PF553_02890 IPR005225 Small GTP-binding protein domain PF553_02890 IPR009000 Translation protein, beta-barrel domain superfamily PF553_02890 IPR041732 Peptide chain release factor 3, GTP-binding domain PF553_02905 IPR018228 Deoxyribonuclease, TatD-related, conserved site PF553_02905 IPR015991 Uncharacterised hydrolase TatD-type PF553_02905 IPR032466 Metal-dependent hydrolase PF553_02905 IPR001130 TatD family PF553_02910 IPR015931 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha, subdomain 1/3 PF553_02910 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain PF553_02910 IPR015928 Aconitase/3-isopropylmalate dehydratase, swivel PF553_02910 IPR006249 Aconitase/Iron-responsive element-binding protein 2 PF553_02910 IPR018136 Aconitase family, 4Fe-4S cluster binding site PF553_02910 IPR036008 Aconitase, iron-sulfur domain PF553_02910 IPR000573 Aconitase A/isopropylmalate dehydratase small subunit, swivel domain PF553_02915 IPR000594 THIF-type NAD/FAD binding fold PF553_02915 IPR035985 Ubiquitin-activating enzyme PF553_02925 IPR000847 Transcription regulator HTH, LysR PF553_02925 IPR036388 Winged helix-like DNA-binding domain superfamily PF553_02925 IPR036390 Winged helix DNA-binding domain superfamily PF553_02925 IPR037411 HTH-type transcriptional regulator AlsR, PBP2 domain PF553_02925 IPR005119 LysR, substrate-binding PF553_02935 IPR013785 Aldolase-type TIM barrel PF553_02935 IPR035587 DUS-like, FMN-binding domain PF553_02935 IPR004653 tRNA-dihydrouridine(20/20a) synthase PF553_02935 IPR018517 tRNA-dihydrouridine synthase, conserved site PF553_02935 IPR001269 tRNA-dihydrouridine synthase PF553_02940 IPR011701 Major facilitator superfamily PF553_02940 IPR020846 Major facilitator superfamily domain PF553_02940 IPR036259 MFS transporter superfamily PF553_02950 IPR000620 EamA domain PF553_02955 IPR008143 Alanine dehydrogenase/pyridine nucleotide transhydrogenase, conserved site-2 PF553_02955 IPR008142 Alanine dehydrogenase/NAD(P) transhydrogenase, conserved site-1 PF553_02955 IPR007886 Alanine dehydrogenase/pyridine nucleotide transhydrogenase, N-terminal PF553_02955 IPR007698 Alanine dehydrogenase/pyridine nucleotide transhydrogenase, NAD(H)-binding domain PF553_02955 IPR036291 NAD(P)-binding domain superfamily PF553_02960 IPR024605 NAD(P) transhydrogenase, alpha subunit, C-terminal PF553_02965 IPR034300 NADP transhydrogenase beta-like domain PF553_02965 IPR029035 DHS-like NAD/FAD-binding domain superfamily PF553_02965 IPR012136 NADP transhydrogenase, beta subunit PF553_02970 IPR036291 NAD(P)-binding domain superfamily PF553_02970 IPR005979 Light-dependent protochlorophyllide reductase PF553_02970 IPR002347 Short-chain dehydrogenase/reductase SDR PF553_02975 IPR004394 Protein Iojap/ribosomal silencing factor RsfS PF553_02980 IPR026040 Hydroxypyruvate isomerase-like PF553_02980 IPR036237 Xylose isomerase-like superfamily PF553_02980 IPR013022 Xylose isomerase-like, TIM barrel domain PF553_02985 IPR036291 NAD(P)-binding domain superfamily PF553_02985 IPR029154 3-hydroxyisobutyrate dehydrogenase, NAD-binding domain PF553_02985 IPR015815 3-hydroxyisobutyrate dehydrogenase-related PF553_02985 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily PF553_02985 IPR013328 6-phosphogluconate dehydrogenase, domain 2 PF553_02985 IPR002204 3-hydroxyisobutyrate dehydrogenase-related, conserved site PF553_02985 IPR006115 6-phosphogluconate dehydrogenase, NADP-binding PF553_02990 IPR029045 ClpP/crotonase-like domain superfamily PF553_02990 IPR018376 Enoyl-CoA hydratase/isomerase, conserved site PF553_02990 IPR001753 Enoyl-CoA hydratase/isomerase PF553_02995 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain PF553_02995 IPR004358 Signal transduction histidine kinase-related protein, C-terminal PF553_02995 IPR036641 HPT domain superfamily PF553_02995 IPR019247 Histidine kinase BarA, N-terminal PF553_02995 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily PF553_02995 IPR036890 Histidine kinase/HSP90-like ATPase superfamily PF553_02995 IPR005467 Histidine kinase domain PF553_02995 IPR003594 Histidine kinase/HSP90-like ATPase PF553_02995 IPR011006 CheY-like superfamily PF553_02995 IPR001789 Signal transduction response regulator, receiver domain PF553_02995 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain PF553_02995 IPR003660 HAMP domain PF553_03000 IPR001926 Pyridoxal-phosphate dependent enzyme PF553_03000 IPR036052 Tryptophan synthase beta subunit-like PLP-dependent enzyme PF553_03000 IPR005858 Cysteine synthase CysM PF553_03000 IPR001216 Cysteine synthase/cystathionine beta-synthase, pyridoxal-phosphate attachment site PF553_03000 IPR005856 Cysteine synthase PF553_03010 IPR030390 RNA methyltransferase TrmA, active site PF553_03010 IPR010280 (Uracil-5)-methyltransferase family PF553_03010 IPR002792 TRAM domain PF553_03010 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase PF553_03010 IPR012340 Nucleic acid-binding, OB-fold PF553_03010 IPR001566 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD PF553_03015 IPR007685 RelA/SpoT PF553_03015 IPR012675 Beta-grasp domain superfamily PF553_03015 IPR004811 RelA/SpoT family PF553_03015 IPR012676 TGS-like PF553_03015 IPR004095 TGS PF553_03015 IPR033655 RelA, TGS domain PF553_03015 IPR002912 ACT domain PF553_03015 IPR003607 HD/PDEase domain PF553_03020 IPR002347 Short-chain dehydrogenase/reductase SDR PF553_03020 IPR020904 Short-chain dehydrogenase/reductase, conserved site PF553_03020 IPR036291 NAD(P)-binding domain superfamily PF553_03025 IPR004518 NTP pyrophosphohydrolase MazG, putative catalytic core PF553_03025 IPR011551 NTP pyrophosphohydrolase MazG PF553_03030 IPR004509 Competence protein ComEA, helix-hairpin-helix domain PF553_03030 IPR010994 RuvA domain 2-like PF553_03035 IPR002646 Poly A polymerase, head domain PF553_03035 IPR010206 Poly(A) polymerase I PF553_03035 IPR025866 Polymerase A arginine-rich C-terminal domain PF553_03035 IPR032828 tRNA nucleotidyltransferase/poly(A) polymerase, RNA and SrmB- binding domain PF553_03040 IPR000550 7,8-Dihydro-6-hydroxymethylpterin-pyrophosphokinase, HPPK PF553_03040 IPR035907 7,8-Dihydro-6-hydroxymethylpterin-pyrophosphokinase HPPK superfamily PF553_03045 IPR040442 Pyruvate kinase-like domain superfamily PF553_03045 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain superfamily PF553_03045 IPR003700 Ketopantoate hydroxymethyltransferase PF553_03050 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold PF553_03050 IPR042176 Pantoate-beta-alanine ligase, C-terminal domain PF553_03050 IPR004821 Cytidyltransferase-like domain PF553_03050 IPR003721 Pantoate-beta-alanine ligase PF553_03055 IPR005337 RapZ-like family PF553_03055 IPR027417 P-loop containing nucleoside triphosphate hydrolase PF553_03060 IPR000032 Phosphocarrier protein HPr-like PF553_03060 IPR001020 Phosphotransferase system, HPr histidine phosphorylation site PF553_03060 IPR002114 Phosphotransferase system, HPr serine phosphorylation site PF553_03060 IPR035895 HPr-like superfamily PF553_03065 IPR023153 PSPTO4464-like domain superfamily PF553_03065 IPR006839 Ribosome-associated, YjgA PF553_03070 IPR000873 AMP-dependent synthetase/ligase PF553_03070 IPR020845 AMP-binding, conserved site PF553_03070 IPR025110 AMP-binding enzyme, C-terminal domain PF553_03070 IPR042099 AMP-dependent synthetase-like superfamily PF553_03075 IPR002314 Aminoacyl-tRNA synthetase, class II (G/ P/ S/T) PF553_03075 IPR006195 Aminoacyl-tRNA synthetase, class II PF553_03075 IPR004154 Anticodon-binding PF553_03075 IPR036621 Anticodon-binding domain superfamily PF553_03075 IPR012675 Beta-grasp domain superfamily PF553_03075 IPR004095 TGS PF553_03075 IPR012676 TGS-like PF553_03075 IPR002320 Threonine-tRNA ligase, class IIa PF553_03075 IPR018163 Threonyl/alanyl tRNA synthetase, class II-like, putative editing domain superfamily PF553_03075 IPR012947 Threonyl/alanyl tRNA synthetase, SAD PF553_03075 IPR033728 Threonine-tRNA ligase catalytic core domain PF553_03080 IPR036787 Translation initiation factor 3 (IF-3), N-terminal domain superfamily PF553_03080 IPR001288 Translation initiation factor 3 PF553_03080 IPR019815 Translation initiation factor 3, C-terminal PF553_03080 IPR019814 Translation initiation factor 3, N-terminal PF553_03080 IPR036788 Translation initiation factor 3 (IF-3), C-terminal domain superfamily PF553_03085 IPR010987 Glutathione S-transferase, C-terminal-like PF553_03085 IPR036282 Glutathione S-transferase, C-terminal domain superfamily PF553_03085 IPR004045 Glutathione S-transferase, N-terminal PF553_03085 IPR004046 Glutathione S-transferase, C-terminal PF553_03085 IPR036249 Thioredoxin-like superfamily PF553_03090 IPR032816 SNARE associated Golgi protein PF553_03095 IPR036259 MFS transporter superfamily PF553_03095 IPR011701 Major facilitator superfamily PF553_03095 IPR004751 Drug antiporter protein PF553_03095 IPR020846 Major facilitator superfamily domain PF553_03105 IPR021137 Ribosomal protein L35 PF553_03105 IPR018265 Ribosomal protein L35, conserved site PF553_03105 IPR001706 Ribosomal protein L35, non-mitochondrial PF553_03105 IPR037229 Ribosomal protein L35 superfamily PF553_03110 IPR005813 Ribosomal protein L20 PF553_03110 IPR035566 Ribosomal protein L20, C-terminal PF553_03130 IPR010978 Class I and II aminoacyl-tRNA synthetase, tRNA-binding arm PF553_03130 IPR002319 Phenylalanyl-tRNA synthetase PF553_03130 IPR006195 Aminoacyl-tRNA synthetase, class II PF553_03130 IPR004188 Phenylalanine-tRNA ligase, class II, N-terminal PF553_03130 IPR004529 Phenylalanyl-tRNA synthetase, class IIc, alpha subunit PF553_03130 IPR022911 Phenylalanine-tRNA ligase alpha chain 1, bacterial PF553_03135 IPR005147 tRNA synthetase, B5-domain PF553_03135 IPR033714 Phenylalanly tRNA synthetase, tRNA-binding-domain PF553_03135 IPR002547 tRNA-binding domain PF553_03135 IPR041616 Phenylalanyl tRNA synthetase beta chain, core domain PF553_03135 IPR005146 B3/B4 tRNA-binding domain PF553_03135 IPR004532 Phenylalanine-tRNA ligase, class IIc, beta subunit PF553_03135 IPR012340 Nucleic acid-binding, OB-fold PF553_03135 IPR036690 Ferrodoxin-fold anticodon-binding domain superfamily PF553_03135 IPR005121 Ferrodoxin-fold anticodon-binding domain PF553_03135 IPR020825 Phenylalanyl-tRNA synthetase, B3/B4 PF553_03135 IPR009061 Putative DNA-binding domain superfamily PF553_03140 IPR005684 Integration host factor, alpha subunit PF553_03140 IPR020816 Histone-like DNA-binding protein, conserved site PF553_03140 IPR000119 Histone-like DNA-binding protein PF553_03140 IPR010992 Integration host factor (IHF)-like DNA-binding domain superfamily PF553_03155 IPR003593 AAA+ ATPase domain PF553_03155 IPR011129 Cold shock domain PF553_03155 IPR012340 Nucleic acid-binding, OB-fold PF553_03155 IPR027417 P-loop containing nucleoside triphosphate hydrolase PF553_03155 IPR041703 Transcription termination factor Rho, ATP binding domain PF553_03155 IPR011112 Rho termination factor, N-terminal PF553_03155 IPR036269 Rho termination factor, N-terminal domain superfamily PF553_03155 IPR011113 Rho termination factor, RNA-binding domain PF553_03155 IPR004665 Transcription termination factor Rho PF553_03155 IPR000194 ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain PF553_03160 IPR017937 Thioredoxin, conserved site PF553_03160 IPR013766 Thioredoxin domain PF553_03160 IPR036249 Thioredoxin-like superfamily PF553_03160 IPR005746 Thioredoxin PF553_03165 IPR030673 Pyrophosphatase, GppA/Ppx-type PF553_03165 IPR003695 Ppx/GppA phosphatase PF553_03165 IPR022371 Exopolyphosphatase PF553_03170 IPR011763 Acetyl-coenzyme A carboxyltransferase, C-terminal PF553_03170 IPR029045 ClpP/crotonase-like domain superfamily PF553_03170 IPR001095 Acetyl-CoA carboxylase, alpha subunit PF553_03175 IPR011063 tRNA(Ile)-lysidine/2-thiocytidine synthase, N-terminal PF553_03175 IPR015262 tRNA(Ile)-lysidine synthase , substrate-binding domain PF553_03175 IPR012795 tRNA(Ile)-lysidine synthase, N-terminal PF553_03175 IPR012094 tRNA(Ile)-lysidine synthase PF553_03175 IPR012796 Lysidine-tRNA(Ile) synthetase, C-terminal PF553_03175 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold PF553_03180 IPR000304 Pyrroline-5-carboxylate reductase PF553_03180 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily PF553_03180 IPR029036 Pyrroline-5-carboxylate reductase, dimerisation domain PF553_03180 IPR028939 Pyrroline-5-carboxylate reductase, catalytic, N-terminal PF553_03180 IPR036291 NAD(P)-binding domain superfamily PF553_03185 IPR003425 CCB3/YggT PF553_03190 IPR036397 Ribonuclease H superfamily PF553_03190 IPR008918 Helix-hairpin-helix motif, class 2 PF553_03190 IPR002298 DNA polymerase A PF553_03190 IPR012337 Ribonuclease H-like superfamily PF553_03190 IPR002562 3'-5' exonuclease domain PF553_03190 IPR018320 DNA polymerase 1 PF553_03190 IPR020046 5'-3' exonuclease, alpha-helical arch, N-terminal PF553_03190 IPR020045 DNA polymerase I-like, H3TH domain PF553_03190 IPR001098 DNA-directed DNA polymerase, family A, palm domain PF553_03190 IPR002421 5'-3' exonuclease, N-terminal PF553_03190 IPR036279 5'-3' exonuclease, C-terminal domain superfamily PF553_03190 IPR019760 DNA-directed DNA polymerase, family A, conserved site PF553_03190 IPR029060 PIN-like domain superfamily PF553_03210 IPR027417 P-loop containing nucleoside triphosphate hydrolase PF553_03210 IPR001482 Type II/IV secretion system protein PF553_03210 IPR037257 General secretory system II, protein E, N-terminal superfamily PF553_03210 IPR013369 Type II secretion system GspE PF553_03210 IPR042181 Type II secretion system, protein E, N-terminal PF553_03215 IPR015946 K homology domain-like, alpha/beta PF553_03215 IPR019953 Organic hydroperoxide resistance protein famiy PF553_03215 IPR003718 OsmC/Ohr family PF553_03215 IPR036102 OsmC/Ohr superfamily PF553_03220 IPR036388 Winged helix-like DNA-binding domain superfamily PF553_03220 IPR036390 Winged helix DNA-binding domain superfamily PF553_03220 IPR000835 MarR-type HTH domain PF553_03230 IPR003010 Carbon-nitrogen hydrolase PF553_03230 IPR036526 Carbon-nitrogen hydrolase superfamily PF553_03230 IPR001110 Uncharacterised protein family UPF0012, conserved site PF553_03275 IPR000394 RNA polymerase sigma factor 54 PF553_03275 IPR007046 RNA polymerase sigma factor 54, core-binding domain PF553_03275 IPR007634 RNA polymerase sigma factor 54, DNA-binding PF553_03275 IPR038709 RNA polymerase sigma-54 factor, core-binding domain superfamily PF553_03280 IPR036567 Ribosome hibernation promotion factor-like PF553_03280 IPR003489 Ribosome hibernation promoting factor/RaiA PF553_03285 IPR036065 BolA-like superfamily PF553_03285 IPR002634 BolA protein PF553_03290 IPR002110 Ankyrin repeat PF553_03290 IPR020683 Ankyrin repeat-containing domain PF553_03290 IPR001986 Enolpyruvate transferase domain PF553_03290 IPR036968 Enolpyruvate transferase domain superfamily PF553_03290 IPR013792 RNA 3'-terminal phosphate cyclase/enolpyruvate transferase, alpha/beta PF553_03290 IPR005750 UDP-N-acetylglucosamine 1-carboxyvinyltransferase PF553_03295 IPR013820 ATP phosphoribosyltransferase, catalytic domain PF553_03295 IPR018198 ATP phosphoribosyltransferase, conserved site PF553_03295 IPR001348 ATP phosphoribosyltransferase HisG PF553_03295 IPR024893 ATP phosphoribosyltransferase HisG, short form PF553_03300 IPR012131 Histidinol dehydrogenase PF553_03300 IPR022695 Histidinol dehydrogenase, monofunctional PF553_03300 IPR001692 Histidinol dehydrogenase, conserved site PF553_03300 IPR016161 Aldehyde/histidinol dehydrogenase PF553_03305 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 PF553_03305 IPR004839 Aminotransferase, class I/classII PF553_03305 IPR005861 Histidinol-phosphate aminotransferase family PF553_03305 IPR015424 Pyridoxal phosphate-dependent transferase PF553_03305 IPR015421 Pyridoxal phosphate-dependent transferase, major domain PF553_03310 IPR019999 Anthranilate synthase component I-like PF553_03310 IPR006805 Anthranilate synthase component I, N-terminal PF553_03310 IPR015890 Chorismate-utilising enzyme, C-terminal PF553_03310 IPR005801 ADC synthase PF553_03310 IPR005802 Aminodeoxychorismate synthase, component I PF553_03340 IPR009057 Homeobox-like domain superfamily PF553_03350 IPR024463 Transposase TnpC, homeodomain PF553_03350 IPR024474 Zinc-finger binding domain of transposase IS66 PF553_03350 IPR039552 Transposase IS66, C-terminal PF553_03350 IPR004291 Transposase, IS66 PF553_03370 IPR015797 NUDIX hydrolase-like domain superfamily PF553_03370 IPR000086 NUDIX hydrolase domain PF553_03370 IPR000059 NUDIX hydrolase, NudL, conserved site PF553_03370 IPR023735 Uncharacterised nudix hydrolase NudL PF553_03375 IPR001451 Hexapeptide repeat PF553_03375 IPR011004 Trimeric LpxA-like superfamily PF553_03380 IPR000905 Gcp-like domain PF553_03380 IPR022496 tRNA threonylcarbamoyl adenosine modification protein TsaB PF553_03385 IPR007536 Ribosomal RNA small subunit methyltransferase J PF553_03385 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase PF553_03395 IPR014186 S-formylglutathione hydrolase PF553_03395 IPR000801 Putative esterase PF553_03395 IPR029058 Alpha/Beta hydrolase fold PF553_03405 IPR011060 Ribulose-phosphate binding barrel PF553_03405 IPR000056 Ribulose-phosphate 3-epimerase-like PF553_03405 IPR026019 Ribulose-phosphate 3-epimerase PF553_03405 IPR013785 Aldolase-type TIM barrel PF553_03410 IPR000150 Cof family PF553_03410 IPR006379 HAD-superfamily hydrolase, subfamily IIB PF553_03410 IPR036412 HAD-like superfamily PF553_03410 IPR023214 HAD superfamily PF553_03420 IPR001117 Multicopper oxidase, type 1 PF553_03420 IPR011706 Multicopper oxidase, type 2 PF553_03420 IPR011707 Multicopper oxidase, type 3 PF553_03420 IPR006376 Copper-resistance protein CopA PF553_03420 IPR033138 Multicopper oxidases, conserved site PF553_03420 IPR034282 Copper resistance protein CopA, second cupredoxin domain PF553_03420 IPR008972 Cupredoxin PF553_03420 IPR034284 Copper resistance protein, first cupredoxin domain PF553_03420 IPR034279 Copper resistance protein, third cupredoxin domain PF553_03420 IPR006311 Twin-arginine translocation pathway, signal sequence PF553_03420 IPR019546 Twin-arginine translocation pathway, signal sequence, bacterial/archaeal PF553_03420 IPR002355 Multicopper oxidase, copper-binding site PF553_03435 IPR000390 Small multidrug resistance protein family PF553_03440 IPR036388 Winged helix-like DNA-binding domain superfamily PF553_03440 IPR036631 Methylated DNA-protein cysteine methyltransferase domain superfamily PF553_03440 IPR023546 Methylated-DNA--protein-cysteine methyltransferase PF553_03440 IPR036217 Methylated DNA-protein cysteine methyltransferase, DNA binding domain PF553_03440 IPR014048 Methylated-DNA-[protein]-cysteine S-methyltransferase, DNA binding PF553_03440 IPR008332 Methylguanine DNA methyltransferase, ribonuclease-like domain PF553_03440 IPR001497 Methylated-DNA-[protein]-cysteine S-methyltransferase, active site PF553_03445 IPR002813 Arginine biosynthesis protein ArgJ PF553_03445 IPR016117 ArgJ-like domain superfamily PF553_03445 IPR042195 ArgJ beta chain, C-terminal domain PF553_03450 IPR003473 Quinolinate synthetase A PF553_03450 IPR036094 Quinolinate synthetase A superfamily PF553_03450 IPR023513 Quinolinate synthase A, type 1 PF553_03475 IPR032466 Metal-dependent hydrolase PF553_03475 IPR001365 Adenosine/AMP deaminase domain PF553_03475 IPR028893 Adenosine deaminase PF553_03475 IPR006330 Adenosine/adenine deaminase PF553_03475 IPR006650 Adenosine/AMP deaminase active site PF553_03480 IPR013149 Alcohol dehydrogenase, C-terminal PF553_03480 IPR013154 Alcohol dehydrogenase, N-terminal PF553_03480 IPR002328 Alcohol dehydrogenase, zinc-type, conserved site PF553_03480 IPR011032 GroES-like superfamily PF553_03480 IPR036291 NAD(P)-binding domain superfamily PF553_03480 IPR020843 Polyketide synthase, enoylreductase domain PF553_03485 IPR036390 Winged helix DNA-binding domain superfamily PF553_03485 IPR036388 Winged helix-like DNA-binding domain superfamily PF553_03485 IPR000847 Transcription regulator HTH, LysR PF553_03485 IPR005119 LysR, substrate-binding PF553_03490 IPR006089 Acyl-CoA dehydrogenase, conserved site PF553_03490 IPR006091 Acyl-CoA oxidase/dehydrogenase, central domain PF553_03490 IPR036250 Acyl-CoA dehydrogenase-like, C-terminal PF553_03490 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal PF553_03490 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal PF553_03490 IPR037069 Acyl-CoA dehydrogenase/oxidase, N-terminal domain superfamily PF553_03490 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily PF553_03495 IPR005829 Sugar transporter, conserved site PF553_03495 IPR036259 MFS transporter superfamily PF553_03495 IPR011701 Major facilitator superfamily PF553_03495 IPR004746 Major facilitator superfamily, aromatic acid:H+ symporter family PF553_03495 IPR020846 Major facilitator superfamily domain PF553_03500 IPR023606 CoA-transferase family III domain superfamily PF553_03500 IPR003673 CoA-transferase family III PF553_03505 IPR023772 DNA-binding HTH domain, TetR-type, conserved site PF553_03505 IPR009057 Homeobox-like domain superfamily PF553_03505 IPR001647 DNA-binding HTH domain, TetR-type PF553_03505 IPR041490 HTH-type transcriptional repressor KstR2, C-terminal PF553_03505 IPR036271 Tetracyclin repressor-like, C-terminal domain superfamily PF553_03515 IPR012830 Citrate utilization protein B PF553_03515 IPR036197 NarG-like superfamily PF553_03520 IPR036280 Multiheme cytochrome superfamily PF553_03520 IPR011031 Multihaem cytochrome PF553_03520 IPR010960 Flavocytochrome c PF553_03520 IPR003953 FAD-dependent oxidoreductase 2, FAD binding domain PF553_03520 IPR036188 FAD/NAD(P)-binding domain superfamily PF553_03520 IPR012286 Tetrahaem cytochrome domain PF553_03520 IPR027477 Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain superfamily PF553_03525 IPR036388 Winged helix-like DNA-binding domain superfamily PF553_03525 IPR000847 Transcription regulator HTH, LysR PF553_03525 IPR005119 LysR, substrate-binding PF553_03525 IPR036390 Winged helix DNA-binding domain superfamily PF553_03535 IPR036259 MFS transporter superfamily PF553_03535 IPR020846 Major facilitator superfamily domain PF553_03535 IPR004736 MFS transporter, metabolite:H symporter PF553_03535 IPR005829 Sugar transporter, conserved site PF553_03535 IPR011701 Major facilitator superfamily PF553_03540 IPR036390 Winged helix DNA-binding domain superfamily PF553_03540 IPR036388 Winged helix-like DNA-binding domain superfamily PF553_03540 IPR005119 LysR, substrate-binding PF553_03540 IPR000847 Transcription regulator HTH, LysR PF553_03545 IPR001123 Amino acid exporter protein, LeuE-type PF553_03550 IPR005119 LysR, substrate-binding PF553_03550 IPR000847 Transcription regulator HTH, LysR PF553_03550 IPR036388 Winged helix-like DNA-binding domain superfamily PF553_03550 IPR036390 Winged helix DNA-binding domain superfamily PF553_03560 IPR038071 UROD/MetE-like superfamily PF553_03560 IPR002629 Cobalamin-independent methionine synthase MetE, C-terminal/archaeal PF553_03560 IPR013215 Cobalamin-independent methionine synthase MetE, N-terminal PF553_03560 IPR006276 Cobalamin-independent methionine synthase PF553_03565 IPR002563 Flavin reductase like domain PF553_03565 IPR019917 FMN reductase (NADH) RutF PF553_03565 IPR012349 FMN-binding split barrel PF553_03600 IPR031409 Darcynin PF553_03615 IPR009078 Ferritin-like superfamily PF553_03615 IPR012348 Ribonucleotide reductase-like PF553_03615 IPR033909 Ribonucleotide reductase small subunit PF553_03615 IPR000358 Ribonucleotide reductase small subunit family PF553_03625 IPR039718 Ribonucleoside-diphosphate reductase large subunit PF553_03625 IPR008926 Ribonucleotide reductase R1 subunit, N-terminal PF553_03625 IPR013509 Ribonucleotide reductase large subunit, N-terminal PF553_03625 IPR000788 Ribonucleotide reductase large subunit, C-terminal PF553_03625 IPR013346 Ribonucleotide reductase, class I , alpha subunit PF553_03625 IPR005144 ATP-cone domain PF553_03635 IPR011006 CheY-like superfamily PF553_03635 IPR001867 OmpR/PhoB-type DNA-binding domain PF553_03635 IPR016032 Signal transduction response regulator, C-terminal effector PF553_03635 IPR001789 Signal transduction response regulator, receiver domain PF553_03635 IPR039420 Transcriptional regulatory protein WalR-like PF553_03635 IPR036388 Winged helix-like DNA-binding domain superfamily PF553_03640 IPR004358 Signal transduction histidine kinase-related protein, C-terminal PF553_03640 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily PF553_03640 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain PF553_03640 IPR005467 Histidine kinase domain PF553_03640 IPR003660 HAMP domain PF553_03640 IPR003594 Histidine kinase/HSP90-like ATPase PF553_03640 IPR036890 Histidine kinase/HSP90-like ATPase superfamily PF553_03650 IPR033424 Membrane-associated sensor domain PF553_03650 IPR000160 GGDEF domain PF553_03650 IPR029787 Nucleotide cyclase PF553_03655 IPR000440 NADH:ubiquinone/plastoquinone oxidoreductase, chain 3 PF553_03655 IPR038430 NADH:ubiquinone oxidoreductase, subunit 3 superfamily PF553_03655 IPR023043 NAD(P)H-quinone oxidoreductase subunit 3, bacterial/plastid PF553_03660 IPR006137 NADH:ubiquinone oxidoreductase-like, 20kDa subunit PF553_03660 IPR006138 NADH-ubiquinone oxidoreductase, 20 Kd subunit PF553_03665 IPR029014 [NiFe]-hydrogenase, large subunit PF553_03665 IPR020396 NADH:ubiquinone oxidoreductase, 30kDa subunit, conserved site PF553_03665 IPR014029 NADH:ubiquinone oxidoreductase, 49kDa subunit, conserved site PF553_03665 IPR001268 NADH:ubiquinone oxidoreductase, 30kDa subunit PF553_03665 IPR037232 NADH:ubiquinone oxidoreductase, 30kDa subunit superfamily PF553_03665 IPR022885 NAD(P)H-quinone oxidoreductase subunit D/H PF553_03665 IPR001135 NADH-quinone oxidoreductase, subunit D PF553_03665 IPR023062 NADH dehydrogenase, subunit CD PF553_03665 IPR010218 NADH dehydrogenase, subunit C PF553_03665 IPR038290 NADH-quinone oxidoreductase, subunit D superfamily PF553_03670 IPR002023 NADH-quinone oxidoreductase subunit E-like PF553_03670 IPR042128 NuoE domain PF553_03670 IPR041921 NADH-quinone oxidoreductase subunit E, N-terminal PF553_03670 IPR036249 Thioredoxin-like superfamily PF553_03675 IPR037207 NADH-ubiquinone oxidoreductase 51kDa subunit, iron-sulphur binding domain superfamily PF553_03675 IPR001949 NADH:ubiquinone oxidoreductase, 51kDa subunit, conserved site PF553_03675 IPR011537 NADH ubiquinone oxidoreductase, F subunit PF553_03675 IPR011538 NADH-ubiquinone oxidoreductase 51kDa subunit, FMN-binding domain PF553_03675 IPR037225 NADH-ubiquinone oxidoreductase 51kDa subunit, FMN-binding domain superfamily PF553_03675 IPR019575 NADH-ubiquinone oxidoreductase 51kDa subunit, iron-sulphur binding domain PF553_03675 IPR019554 Soluble ligand binding domain PF553_03680 IPR010228 NADH:ubiquinone oxidoreductase, subunit G PF553_03680 IPR000283 NADH:ubiquinone oxidoreductase, 75kDa subunit, conserved site PF553_03680 IPR019574 NADH:ubiquinone oxidoreductase, subunit G, iron-sulphur binding PF553_03680 IPR006963 Molybdopterin oxidoreductase, 4Fe-4S domain PF553_03680 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain PF553_03680 IPR009010 Aspartate decarboxylase-like domain superfamily PF553_03680 IPR036010 2Fe-2S ferredoxin-like superfamily PF553_03680 IPR006656 Molybdopterin oxidoreductase PF553_03685 IPR001694 NADH:ubiquinone oxidoreductase, subunit 1/F420H2 oxidoreductase subunit H PF553_03685 IPR018086 NADH:ubiquinone oxidoreductase, subunit 1, conserved site PF553_03690 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain PF553_03690 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site PF553_03690 IPR010226 NADH-quinone oxidoreductase, chain I PF553_03695 IPR042106 NADH-ubiquinone/plastoquinone oxidoreductase chain 6, subunit NuoJ PF553_03695 IPR001457 NADH:ubiquinone/plastoquinone oxidoreductase, chain 6 PF553_03700 IPR001133 NADH-ubiquinone oxidoreductase chain 4L/K PF553_03700 IPR039428 NADH-ubiquinone oxidoreductase chain 4L/Mnh complex subunit C1-like PF553_03705 IPR003945 NADH-plastoquinone oxidoreductase, chain 5 PF553_03705 IPR018393 NADH-plastoquinone oxidoreductase, chain 5 subgroup PF553_03705 IPR001750 NADH:quinone oxidoreductase/Mrp antiporter, membrane subunit PF553_03705 IPR001516 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminal PF553_03710 IPR003918 NADH:ubiquinone oxidoreductase PF553_03710 IPR010227 NADH-quinone oxidoreductase, chain M/4 PF553_03710 IPR001750 NADH:quinone oxidoreductase/Mrp antiporter, membrane subunit PF553_03715 IPR001750 NADH:quinone oxidoreductase/Mrp antiporter, membrane subunit PF553_03715 IPR010096 NAD(P)H-quinone oxidoreductase, subunit N/subunit 2 PF553_03720 IPR000836 Phosphoribosyltransferase domain PF553_03720 IPR029057 Phosphoribosyltransferase-like PF553_03720 IPR034332 Uracil phosphoribosyltransferase, bacterial-type PF553_03720 IPR005765 Uracil phosphoribosyl transferase PF553_03725 IPR012156 Cold shock, CspA PF553_03725 IPR011129 Cold shock domain PF553_03725 IPR019844 Cold-shock (CSD) domain PF553_03725 IPR002059 Cold-shock protein, DNA-binding PF553_03725 IPR012340 Nucleic acid-binding, OB-fold PF553_03735 IPR036388 Winged helix-like DNA-binding domain superfamily PF553_03735 IPR005119 LysR, substrate-binding PF553_03735 IPR000847 Transcription regulator HTH, LysR PF553_03735 IPR036390 Winged helix DNA-binding domain superfamily PF553_03740 IPR017938 Riboflavin synthase-like beta-barrel PF553_03740 IPR001433 Oxidoreductase FAD/NAD(P)-binding PF553_03740 IPR039261 Ferredoxin-NADP reductase (FNR), nucleotide-binding domain PF553_03740 IPR033892 Ferredoxin--NADP reductase, bacteria PF553_03740 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase PF553_03740 IPR017927 FAD-binding domain, ferredoxin reductase-type PF553_03740 IPR008333 Flavoprotein pyridine nucleotide cytochrome reductase-like, FAD-binding domain PF553_03755 IPR008910 Conserved TM helix PF553_03765 IPR036188 FAD/NAD(P)-binding domain superfamily PF553_03765 IPR004792 3-Dehydro-bile acid delta(4,6)-reductase-like PF553_03765 IPR023166 HI0933-like insert domain superfamily PF553_03770 IPR027278 1-aminocyclopropane-1-carboxylate deaminase/D-cysteine desulfhydrase PF553_03770 IPR005966 D-cysteine desulfhydrase PF553_03770 IPR001926 Pyridoxal-phosphate dependent enzyme PF553_03770 IPR036052 Tryptophan synthase beta subunit-like PLP-dependent enzyme PF553_03775 IPR039562 Membrane fusion protein, biotin-lipoyl like domain PF553_03800 IPR002547 tRNA-binding domain PF553_03800 IPR009080 Aminoacyl-tRNA synthetase, class Ia, anticodon-binding PF553_03800 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold PF553_03800 IPR012340 Nucleic acid-binding, OB-fold PF553_03800 IPR029038 Methionyl-tRNA synthetase, Zn-domain PF553_03800 IPR033911 Methioninyl-tRNA synthetase core domain PF553_03800 IPR015413 Methionyl/Leucyl tRNA synthetase PF553_03800 IPR014758 Methionyl-tRNA synthetase PF553_03800 IPR041872 Methionyl-tRNA synthetase, anticodon-binding domain PF553_03800 IPR004495 Methionyl-tRNA synthetase, beta subunit, C-terminal PF553_03800 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site PF553_03800 IPR023458 Methionine-tRNA ligase, type 1 PF553_03810 IPR000808 Mrp, conserved site PF553_03810 IPR033756 Flagellum site-determining protein YlxH/ Fe-S cluster assembling factor NBP35 PF553_03810 IPR027417 P-loop containing nucleoside triphosphate hydrolase PF553_03810 IPR034904 Fe-S cluster assembly domain superfamily PF553_03810 IPR019591 Mrp/NBP35 ATP-binding protein PF553_03815 IPR010049 MTA/SAH nucleosidase PF553_03815 IPR000845 Nucleoside phosphorylase domain PF553_03815 IPR035994 Nucleoside phosphorylase superfamily PF553_03830 IPR033704 dUTPase, trimeric PF553_03830 IPR011962 dCTP deaminase PF553_03830 IPR029054 dUTPase-like PF553_03830 IPR036157 dUTPase-like superfamily PF553_03860 IPR001269 tRNA-dihydrouridine synthase PF553_03860 IPR042270 tRNA-dihydrouridine(16) synthase, C-terminal PF553_03860 IPR032886 tRNA-dihydrouridine(16) synthase PF553_03860 IPR035587 DUS-like, FMN-binding domain PF553_03860 IPR013785 Aldolase-type TIM barrel PF553_03860 IPR018517 tRNA-dihydrouridine synthase, conserved site PF553_03870 IPR013822 Signal recognition particle SRP54, helical bundle PF553_03870 IPR042101 Signal recognition particle SRP54, N-terminal domain superfamily PF553_03870 IPR036891 Signal recognition particle, SRP54 subunit, M-domain superfamily PF553_03870 IPR022941 Signal recognition particle, SRP54 subunit PF553_03870 IPR004780 Signal recognition particle protein PF553_03870 IPR004125 Signal recognition particle, SRP54 subunit, M-domain PF553_03870 IPR027417 P-loop containing nucleoside triphosphate hydrolase PF553_03870 IPR000897 Signal recognition particle, SRP54 subunit, GTPase domain PF553_03870 IPR003593 AAA+ ATPase domain PF553_03875 IPR004619 Type III pantothenate kinase PF553_03885 IPR002781 Transmembrane protein TauE-like PF553_03895 IPR011890 Structural maintenance of chromosomes protein, prokaryotic PF553_03895 IPR036277 SMCs flexible hinge superfamily PF553_03895 IPR010935 SMCs flexible hinge PF553_03895 IPR024704 Structural maintenance of chromosomes protein PF553_03895 IPR003395 RecF/RecN/SMC, N-terminal PF553_03895 IPR027417 P-loop containing nucleoside triphosphate hydrolase PF553_03905 IPR013839 NAD-dependent DNA ligase, adenylation PF553_03905 IPR003583 Helix-hairpin-helix DNA-binding motif, class 1 PF553_03905 IPR013840 NAD-dependent DNA ligase, N-terminal PF553_03905 IPR010994 RuvA domain 2-like PF553_03905 IPR004150 NAD-dependent DNA ligase, OB-fold PF553_03905 IPR012340 Nucleic acid-binding, OB-fold PF553_03905 IPR001679 NAD-dependent DNA ligase PF553_03905 IPR004149 Zinc-finger, NAD-dependent DNA ligase C4-type PF553_03905 IPR033136 NAD-dependent DNA ligase, conserved site PF553_03905 IPR018239 NAD-dependent DNA ligase, active site PF553_03905 IPR041663 DisA/LigA, helix-hairpin-helix motif PF553_03905 IPR036420 BRCT domain superfamily PF553_03905 IPR001357 BRCT domain PF553_03910 IPR009078 Ferritin-like superfamily PF553_03910 IPR009040 Ferritin-like diiron domain PF553_03910 IPR012347 Ferritin-like PF553_03910 IPR002024 Bacterioferritin PF553_03910 IPR008331 Ferritin/DPS protein domain PF553_03915 IPR020846 Major facilitator superfamily domain PF553_03915 IPR036259 MFS transporter superfamily PF553_03915 IPR011701 Major facilitator superfamily PF553_03920 IPR012766 Alpha,alpha-trehalose-phosphate synthase PF553_03920 IPR001830 Glycosyl transferase, family 20 PF553_03925 IPR003337 Trehalose-phosphatase PF553_03925 IPR023214 HAD superfamily PF553_03925 IPR006379 HAD-superfamily hydrolase, subfamily IIB PF553_03925 IPR036412 HAD-like superfamily PF553_03930 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase PF553_03930 IPR013216 Methyltransferase type 11 PF553_03930 IPR011814 Malonyl-[acyl-carrier protein] O-methyltransferase BioC PF553_03930 IPR000073 Alpha/beta hydrolase fold-1 PF553_03930 IPR029058 Alpha/Beta hydrolase fold PF553_03935 IPR005814 Aminotransferase class-III PF553_03935 IPR010722 Biotin and thiamin synthesis-associated domain PF553_03935 IPR005815 Adenosylmethionine--8-amino-7-oxononanoate aminotransferase BioA PF553_03935 IPR007197 Radical SAM PF553_03935 IPR013785 Aldolase-type TIM barrel PF553_03935 IPR002684 Biotin synthase/Biotin biosynthesis bifunctional protein BioAB PF553_03935 IPR006638 Elp3/MiaB/NifB PF553_03935 IPR015424 Pyridoxal phosphate-dependent transferase PF553_03935 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 PF553_03935 IPR015421 Pyridoxal phosphate-dependent transferase, major domain PF553_03940 IPR004839 Aminotransferase, class I/classII PF553_03940 IPR004723 8-amino-7-oxononanoate synthase, Archaea/Proteobacteria type PF553_03940 IPR015424 Pyridoxal phosphate-dependent transferase PF553_03940 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 PF553_03940 IPR015421 Pyridoxal phosphate-dependent transferase, major domain PF553_03940 IPR001917 Aminotransferase, class-II, pyridoxal-phosphate binding site PF553_03945 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase PF553_03945 IPR011814 Malonyl-[acyl-carrier protein] O-methyltransferase BioC PF553_03950 IPR027417 P-loop containing nucleoside triphosphate hydrolase PF553_03950 IPR004472 Dethiobiotin synthase BioD PF553_03955 IPR020103 Pseudouridine synthase, catalytic domain superfamily PF553_03955 IPR000748 Pseudouridine synthase, RsuA/RluB/E/F PF553_03955 IPR018496 Pseudouridine synthase, RsuA/RluB/E/F, conserved site PF553_03955 IPR002942 RNA-binding S4 domain PF553_03955 IPR036986 RNA-binding S4 domain superfamily PF553_03955 IPR006145 Pseudouridine synthase, RsuA/RluA PF553_03955 IPR042092 Pseudouridine synthase, RsuA/RluB/E/F, catalytic domain PF553_03960 IPR005234 Chromosome segregation/condensation protein ScpB PF553_03960 IPR036388 Winged helix-like DNA-binding domain superfamily PF553_03960 IPR036390 Winged helix DNA-binding domain superfamily PF553_03965 IPR003768 Segregation and condensation protein A PF553_03970 IPR006070 YrdC-like domain PF553_03970 IPR017945 DHBP synthase RibB-like alpha/beta domain superfamily PF553_03975 IPR007411 Elongation factor P hydroxylase PF553_03980 IPR039255 Large ribosomal RNA subunit accumulation protein YceD, bacteria PF553_03980 IPR003772 Large ribosomal RNA subunit accumulation protein YceD PF553_03985 IPR011332 Zinc-binding ribosomal protein PF553_03985 IPR002677 Ribosomal protein L32p PF553_03990 IPR001227 Acyl transferase domain superfamily PF553_03990 IPR014043 Acyl transferase PF553_03990 IPR016035 Acyl transferase/acyl hydrolase/lysophospholipase PF553_03990 IPR024925 Malonyl CoA-acyl carrier protein transacylase PF553_03990 IPR016036 Malonyl-CoA ACP transacylase, ACP-binding PF553_03990 IPR004410 Malonyl CoA-acyl carrier protein transacylase, FabD-type PF553_03995 IPR002347 Short-chain dehydrogenase/reductase SDR PF553_03995 IPR036291 NAD(P)-binding domain superfamily PF553_03995 IPR011284 3-oxoacyl-(acyl-carrier-protein) reductase PF553_03995 IPR020904 Short-chain dehydrogenase/reductase, conserved site PF553_04000 IPR036736 ACP-like superfamily PF553_04000 IPR003231 Acyl carrier protein (ACP) PF553_04000 IPR009081 Phosphopantetheine binding ACP domain PF553_04000 IPR006162 Phosphopantetheine attachment site PF553_04005 IPR014004 Transport-associated and nodulation domain, bacteria PF553_04005 IPR018392 LysM domain PF553_04005 IPR007055 BON domain PF553_04005 IPR036779 LysM domain superfamily PF553_04010 IPR036206 Thiamin phosphate synthase superfamily PF553_04010 IPR013785 Aldolase-type TIM barrel PF553_04010 IPR016084 Haem oxygenase-like, multi-helical PF553_04010 IPR004399 Hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase PF553_04010 IPR013749 Pyridoxamine kinase/Phosphomethylpyrimidine kinase PF553_04010 IPR029056 Ribokinase-like PF553_04010 IPR004305 Thiaminase-2/PQQC PF553_04010 IPR022998 Thiamine phosphate synthase/TenI PF553_04010 IPR034291 Thiamine phosphate synthase PF553_04020 IPR017945 DHBP synthase RibB-like alpha/beta domain superfamily PF553_04020 IPR000422 3,4-dihydroxy-2-butanone 4-phosphate synthase, RibB PF553_04035 IPR009010 Aspartate decarboxylase-like domain superfamily PF553_04035 IPR003190 Aspartate decarboxylase PF553_04040 IPR001328 Peptidyl-tRNA hydrolase PF553_04040 IPR018171 Peptidyl-tRNA hydrolase, conserved site PF553_04040 IPR036416 Peptidyl-tRNA hydrolase superfamily PF553_04045 IPR020055 Ribosomal protein L25, short-form PF553_04045 IPR011035 Ribosomal protein L25/Gln-tRNA synthetase, anti-codon-binding domain superfamily PF553_04045 IPR020056 Ribosomal protein L25/Gln-tRNA synthetase, N-terminal PF553_04045 IPR029751 Ribosomal protein L25 PF553_04050 IPR029057 Phosphoribosyltransferase-like PF553_04050 IPR005946 Ribose-phosphate pyrophosphokinase PF553_04050 IPR000842 Phosphoribosyl pyrophosphate synthetase, conserved site PF553_04050 IPR029099 Ribose-phosphate pyrophosphokinase, N-terminal domain PF553_04050 IPR000836 Phosphoribosyltransferase domain PF553_04050 IPR037515 Ribose-phosphate pyrophosphokinase, bacterial-type PF553_04075 IPR020568 Ribosomal protein S5 domain 2-type fold PF553_04075 IPR036554 GHMP kinase, C-terminal domain superfamily PF553_04075 IPR013750 GHMP kinase, C-terminal domain PF553_04075 IPR004424 4-diphosphocytidyl-2C-methyl-D-erythritol kinase PF553_04075 IPR006204 GHMP kinase N-terminal domain PF553_04075 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup PF553_04080 IPR029046 Lipoprotein localisation LolA/LolB/LppX PF553_04080 IPR004565 Outer membrane lipoprotein LolB PF553_04090 IPR036291 NAD(P)-binding domain superfamily PF553_04090 IPR000343 Tetrapyrrole biosynthesis, glutamyl-tRNA reductase PF553_04090 IPR015896 Tetrapyrrole biosynthesis, glutamyl-tRNA reductase, dimerisation domain PF553_04090 IPR015895 Tetrapyrrole biosynthesis, glutamyl-tRNA reductase, N-terminal PF553_04090 IPR018214 Glutamyl-tRNA reductase, conserved site PF553_04090 IPR036453 Glutamyl tRNA-reductase dimerization domain superfamily PF553_04090 IPR036343 Glutamyl-tRNA reductase, N-terminal domain superfamily PF553_04090 IPR006151 Quinate/shikimate 5-dehydrogenase/glutamyl-tRNA reductase PF553_04095 IPR034151 Bacterial DnaG primase, TOPRIM domain PF553_04095 IPR016136 DNA helicase DnaB, N-terminal/DNA primase DnaG, C-terminal PF553_04095 IPR013264 DNA primase, catalytic core, N-terminal PF553_04095 IPR037068 DNA primase, catalytic core, N-terminal domain superfamily PF553_04095 IPR019475 DNA primase, DnaB-helicase binding domain PF553_04095 IPR006295 DNA primase, DnaG PF553_04095 IPR013173 DNA primase DnaG, DnaB-binding domain PF553_04095 IPR036977 DNA Primase, CHC2-type zinc finger PF553_04095 IPR030846 DNA primase DnaG, bacteria PF553_04095 IPR006171 TOPRIM domain PF553_04095 IPR002694 Zinc finger, CHC2-type PF553_04100 IPR017689 Outer membrane protein assembly factor BamD PF553_04100 IPR039565 Outer membrane lipoprotein BamD-like PF553_04100 IPR011990 Tetratricopeptide-like helical domain superfamily PF553_04105 IPR006145 Pseudouridine synthase, RsuA/RluA PF553_04105 IPR020103 Pseudouridine synthase, catalytic domain superfamily PF553_04105 IPR006225 Pseudouridine synthase, RluC/RluD PF553_04105 IPR006224 Pseudouridine synthase, RluC/RluD, conserved site PF553_04105 IPR002942 RNA-binding S4 domain PF553_04105 IPR036986 RNA-binding S4 domain superfamily PF553_04110 IPR011324 Cytotoxic necrotizing factor-like, catalytic PF553_04110 IPR038371 Multi-copper polyphenol oxidoreductase superfamily PF553_04110 IPR003730 Multi-copper polyphenol oxidoreductase PF553_04115 IPR008254 Flavodoxin/nitric oxide synthase PF553_04115 IPR029039 Flavoprotein-like superfamily PF553_04115 IPR005025 NADPH-dependent FMN reductase-like PF553_04120 IPR023620 Small protein B PF553_04120 IPR020081 SsrA-binding protein, conserved site PF553_04120 IPR000037 SsrA-binding protein PF553_04125 IPR001980 Phosphopantetheine adenylyltransferase PF553_04125 IPR004821 Cytidyltransferase-like domain PF553_04125 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold PF553_04130 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain PF553_04130 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site PF553_04150 IPR005119 LysR, substrate-binding PF553_04150 IPR000847 Transcription regulator HTH, LysR PF553_04150 IPR036390 Winged helix DNA-binding domain superfamily PF553_04150 IPR036388 Winged helix-like DNA-binding domain superfamily PF553_04155 IPR019818 Isocitrate/isopropylmalate dehydrogenase, conserved site PF553_04155 IPR024084 Isopropylmalate dehydrogenase-like domain PF553_04155 IPR011829 Tartrate dehydrogenase PF553_04160 IPR000060 BCCT transporter family PF553_04165 IPR033140 Lipase, GDXG, putative serine active site PF553_04165 IPR029058 Alpha/Beta hydrolase fold PF553_04165 IPR013094 Alpha/beta hydrolase fold-3 PF553_04165 IPR002168 Lipase, GDXG, putative histidine active site PF553_04170 IPR015879 Aromatic-ring-hydroxylating dioxygenase, alpha subunit, C-terminal domain PF553_04170 IPR001663 Aromatic-ring-hydroxylating dioxygenase, alpha subunit PF553_04170 IPR039004 Carnitine monooxygenase oxygenase subunit PF553_04170 IPR017941 Rieske [2Fe-2S] iron-sulphur domain PF553_04170 IPR036922 Rieske [2Fe-2S] iron-sulphur domain superfamily PF553_04170 IPR015881 Aromatic-ring-hydroxylating dioxygenase, 2Fe-2S-binding site PF553_04175 IPR029510 Aldehyde dehydrogenase, glutamic acid active site PF553_04175 IPR015590 Aldehyde dehydrogenase domain PF553_04175 IPR016163 Aldehyde dehydrogenase, C-terminal PF553_04175 IPR016161 Aldehyde/histidinol dehydrogenase PF553_04175 IPR010102 Succinate semialdehyde dehydrogenase PF553_04175 IPR016160 Aldehyde dehydrogenase, cysteine active site PF553_04175 IPR016162 Aldehyde dehydrogenase, N-terminal PF553_04180 IPR017938 Riboflavin synthase-like beta-barrel PF553_04180 IPR000951 Phthalate dioxygenase reductase PF553_04180 IPR001433 Oxidoreductase FAD/NAD(P)-binding PF553_04180 IPR036010 2Fe-2S ferredoxin-like superfamily PF553_04180 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain PF553_04180 IPR039261 Ferredoxin-NADP reductase (FNR), nucleotide-binding domain PF553_04180 IPR006058 2Fe-2S ferredoxin, iron-sulphur binding site PF553_04180 IPR012675 Beta-grasp domain superfamily PF553_04180 IPR017927 FAD-binding domain, ferredoxin reductase-type PF553_04180 IPR008333 Flavoprotein pyridine nucleotide cytochrome reductase-like, FAD-binding domain PF553_04180 IPR039003 Carnitine monooxygenase reductase subunit PF553_04195 IPR003694 NAD(+) synthetase PF553_04195 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold PF553_04195 IPR000132 Nitrilase/cyanide hydratase, conserved site PF553_04195 IPR022310 NAD/GMP synthase PF553_04195 IPR014445 Glutamine-dependent NAD(+) synthetase PF553_04195 IPR036526 Carbon-nitrogen hydrolase superfamily PF553_04195 IPR003010 Carbon-nitrogen hydrolase PF553_04205 IPR003829 Pirin, N-terminal domain PF553_04205 IPR011051 RmlC-like cupin domain superfamily PF553_04205 IPR012093 Pirin PF553_04205 IPR014710 RmlC-like jelly roll fold PF553_04205 IPR008778 Pirin, C-terminal domain PF553_04210 IPR005265 Protoporphyrinogen oxidase HemJ-like PF553_04215 IPR000794 Beta-ketoacyl synthase PF553_04215 IPR014030 Beta-ketoacyl synthase, N-terminal PF553_04215 IPR014031 Beta-ketoacyl synthase, C-terminal PF553_04215 IPR018201 Beta-ketoacyl synthase, active site PF553_04215 IPR020841 Polyketide synthase, beta-ketoacyl synthase domain PF553_04215 IPR016039 Thiolase-like PF553_04225 IPR005679 Ribosomal protein S12, bacterial-type PF553_04225 IPR012340 Nucleic acid-binding, OB-fold PF553_04225 IPR006032 Ribosomal protein S12/S23 PF553_04230 IPR000235 Ribosomal protein S5/S7 PF553_04230 IPR005717 Ribosomal protein S7, bacterial/organellar-type PF553_04230 IPR020606 Ribosomal protein S7, conserved site PF553_04230 IPR023798 Ribosomal protein S7 domain PF553_04230 IPR036823 Ribosomal protein S7 domain superfamily PF553_04235 IPR041095 Elongation Factor G, domain II PF553_04235 IPR009022 Elongation factor G, domain III PF553_04235 IPR035647 EF-G domain III/V-like PF553_04235 IPR035649 EFG, domain V PF553_04235 IPR000640 Elongation factor EFG, domain V-like PF553_04235 IPR004161 Translation elongation factor EFTu-like, domain 2 PF553_04235 IPR027417 P-loop containing nucleoside triphosphate hydrolase PF553_04235 IPR020568 Ribosomal protein S5 domain 2-type fold PF553_04235 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup PF553_04235 IPR005225 Small GTP-binding protein domain PF553_04235 IPR000795 Transcription factor, GTP-binding domain PF553_04235 IPR009000 Translation protein, beta-barrel domain superfamily PF553_04235 IPR004540 Translation elongation factor EFG/EF2 PF553_04235 IPR005517 Translation elongation factor EFG/EF2, domain IV PF553_04235 IPR031157 Tr-type G domain, conserved site PF553_04240 IPR004541 Translation elongation factor EFTu/EF1A, bacterial/organelle PF553_04240 IPR041709 Elongation factor Tu (EF-Tu), GTP-binding domain PF553_04240 IPR000795 Transcription factor, GTP-binding domain PF553_04240 IPR009001 Translation elongation factor EF1A/initiation factor IF2gamma, C-terminal PF553_04240 IPR009000 Translation protein, beta-barrel domain superfamily PF553_04240 IPR004160 Translation elongation factor EFTu/EF1A, C-terminal PF553_04240 IPR033720 Elongation factor Tu, domain 2 PF553_04240 IPR005225 Small GTP-binding protein domain PF553_04240 IPR027417 P-loop containing nucleoside triphosphate hydrolase PF553_04240 IPR031157 Tr-type G domain, conserved site PF553_04240 IPR004161 Translation elongation factor EFTu-like, domain 2 PF553_04255 IPR016181 Acyl-CoA N-acyltransferase PF553_04255 IPR000182 GNAT domain PF553_04255 IPR006464 N-acetyltransferase RimI/Ard1 PF553_04260 IPR007472 N-end rule aminoacyl transferase, C-terminal PF553_04260 IPR017138 Aspartate/glutamate leucyltransferase PF553_04260 IPR030700 N-end rule aminoacyl transferase PF553_04260 IPR007471 N-end aminoacyl transferase, N-terminal PF553_04260 IPR016181 Acyl-CoA N-acyltransferase PF553_04265 IPR016181 Acyl-CoA N-acyltransferase PF553_04265 IPR004616 Leucyl/phenylalanyl-tRNA-protein transferase PF553_04265 IPR042203 Leucyl/phenylalanyl-tRNA-protein transferase, C-terminal PF553_04270 IPR008255 Pyridine nucleotide-disulphide oxidoreductase, class-II, active site PF553_04270 IPR005982 Thioredoxin reductase PF553_04270 IPR023753 FAD/NAD(P)-binding domain PF553_04270 IPR036188 FAD/NAD(P)-binding domain superfamily PF553_04275 IPR036390 Winged helix DNA-binding domain superfamily PF553_04275 IPR036388 Winged helix-like DNA-binding domain superfamily PF553_04275 IPR027417 P-loop containing nucleoside triphosphate hydrolase PF553_04275 IPR018541 FtsK gamma domain PF553_04275 IPR002543 FtsK domain PF553_04275 IPR041027 FtsK alpha domain PF553_04275 IPR025199 DNA translocase FtsK, 4TM region PF553_04280 IPR001123 Amino acid exporter protein, LeuE-type PF553_04280 IPR004778 Homoserine/Threonine efflux protein PF553_04290 IPR005527 Cell division topological specificity factor MinE PF553_04290 IPR036707 Cell division topological specificity factor MinE superfamily PF553_04295 IPR002586 CobQ/CobB/MinD/ParA nucleotide binding domain PF553_04295 IPR010223 ATP binding protein MinD, bacterial-type PF553_04295 IPR025501 ATP binding protein MinD PF553_04295 IPR027417 P-loop containing nucleoside triphosphate hydrolase PF553_04300 IPR016098 Cyclase-associated protein CAP/septum formation inhibitor MinC, C-terminal PF553_04300 IPR013033 Septum formation inhibitor MinC PF553_04300 IPR036145 Septum formation inhibitor MinC, C-terminal domain superfamily PF553_04300 IPR005526 Septum formation inhibitor MinC, C-terminal PF553_04310 IPR002123 Phospholipid/glycerol acyltransferase PF553_04315 IPR006690 Outer membrane protein, OmpA-like, conserved site PF553_04315 IPR036737 OmpA-like domain superfamily PF553_04315 IPR006665 OmpA-like domain PF553_04315 IPR039567 Glycine zipper domain PF553_04315 IPR006664 Outer membrane protein, bacterial PF553_04320 IPR013986 DExx box DNA helicase domain superfamily PF553_04320 IPR014017 UvrD-like DNA helicase, C-terminal PF553_04320 IPR000212 DNA helicase, UvrD/REP type PF553_04320 IPR005752 ATP-dependent DNA helicase Rep PF553_04320 IPR027417 P-loop containing nucleoside triphosphate hydrolase PF553_04320 IPR014016 UvrD-like helicase, ATP-binding domain PF553_04320 IPR034739 UvrD/AddA helicase, N-terminal PF553_04325 IPR036157 dUTPase-like superfamily PF553_04325 IPR029054 dUTPase-like PF553_04325 IPR008181 Deoxyuridine triphosphate nucleotidohydrolase PF553_04325 IPR033704 dUTPase, trimeric PF553_04330 IPR005844 Alpha-D-phosphohexomutase, alpha/beta/alpha domain I PF553_04330 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III PF553_04330 IPR005845 Alpha-D-phosphohexomutase, alpha/beta/alpha domain II PF553_04330 IPR005846 Alpha-D-phosphohexomutase, alpha/beta/alpha domain III PF553_04330 IPR016066 Alpha-D-phosphohexomutase, conserved site PF553_04330 IPR036900 Alpha-D-phosphohexomutase, C-terminal domain superfamily PF553_04330 IPR005843 Alpha-D-phosphohexomutase, C-terminal PF553_04330 IPR005841 Alpha-D-phosphohexomutase superfamily PF553_04335 IPR004662 Acetylglutamate kinase family PF553_04335 IPR037528 Acetylglutamate kinase ArgB PF553_04335 IPR001048 Aspartate/glutamate/uridylate kinase PF553_04335 IPR041727 N-Acetyl-L-glutamate kinase, cyclic PF553_04335 IPR036393 Acetylglutamate kinase-like superfamily PF553_04345 IPR029055 Nucleophile aminohydrolases, N-terminal PF553_04345 IPR017932 Glutamine amidotransferase type 2 domain PF553_04345 IPR026869 Putative glutamine amidotransferase type 2 PF553_04350 IPR012312 Haemerythrin-like PF553_04350 IPR016131 Haemerythrin, iron-binding site PF553_04350 IPR035938 Hemerythrin-like superfamily PF553_04350 IPR012827 Haemerythrin, metal-binding domain PF553_04350 IPR023504 Bacteriohemerythrin-like protein PF553_04360 IPR016155 Molybdopterin synthase/thiamin biosynthesis sulphur carrier, beta-grasp PF553_04360 IPR005346 RnfH protein PF553_04360 IPR037021 RnfH superfamily PF553_04365 IPR007450 Lipoprotein SmpA/OmlA PF553_04365 IPR026592 Outer membrane protein assembly factor BamE PF553_04365 IPR037873 BamE-like PF553_04370 IPR036390 Winged helix DNA-binding domain superfamily PF553_04370 IPR036388 Winged helix-like DNA-binding domain superfamily PF553_04370 IPR002481 Ferric-uptake regulator PF553_04375 IPR006321 Pilus retraction protein PilT PF553_04375 IPR027417 P-loop containing nucleoside triphosphate hydrolase PF553_04375 IPR001482 Type II/IV secretion system protein PF553_04380 IPR003593 AAA+ ATPase domain PF553_04380 IPR001482 Type II/IV secretion system protein PF553_04380 IPR027417 P-loop containing nucleoside triphosphate hydrolase PF553_04380 IPR006321 Pilus retraction protein PilT PF553_04385 IPR029066 PLP-binding barrel PF553_04385 IPR011078 Pyridoxal phosphate homeostasis protein PF553_04385 IPR001608 Alanine racemase, N-terminal PF553_04390 IPR027417 P-loop containing nucleoside triphosphate hydrolase PF553_04395 IPR004843 Calcineurin-like phosphoesterase domain, ApaH type PF553_04395 IPR029052 Metallo-dependent phosphatase-like PF553_04395 IPR041796 Mre11 nuclease, N-terminal metallophosphatase domain PF553_04395 IPR004593 Nuclease SbcCD subunit D PF553_04395 IPR026843 Nuclease SbcCD subunit D, C-terminal domain PF553_04415 IPR036291 NAD(P)-binding domain superfamily PF553_04415 IPR010099 Epimerase family protein SDR39U1 PF553_04415 IPR001509 NAD-dependent epimerase/dehydratase PF553_04415 IPR013549 Domain of unknown function DUF1731 PF553_04420 IPR006076 FAD dependent oxidoreductase PF553_04420 IPR012727 Glycine oxidase ThiO PF553_04420 IPR036188 FAD/NAD(P)-binding domain superfamily PF553_04425 IPR001731 Delta-aminolevulinic acid dehydratase PF553_04425 IPR030656 Delta-aminolevulinic acid dehydratase, active site PF553_04425 IPR013785 Aldolase-type TIM barrel PF553_04430 IPR029069 HotDog domain superfamily PF553_04430 IPR003736 Phenylacetic acid degradation-related domain PF553_04430 IPR006683 Thioesterase domain PF553_04435 IPR039562 Membrane fusion protein, biotin-lipoyl like domain PF553_04440 IPR011701 Major facilitator superfamily PF553_04440 IPR004638 Drug resistance transporter EmrB-like PF553_04440 IPR020846 Major facilitator superfamily domain PF553_04440 IPR036259 MFS transporter superfamily PF553_04445 IPR000101 Gamma-glutamyltranspeptidase PF553_04445 IPR029055 Nucleophile aminohydrolases, N-terminal PF553_04515 IPR006054 DNA polymerase III epsilon subunit, exonuclease domain PF553_04515 IPR013520 Exonuclease, RNase T/DNA polymerase III PF553_04515 IPR012337 Ribonuclease H-like superfamily PF553_04515 IPR036397 Ribonuclease H superfamily PF553_04550 IPR015927 Peptidase S24/S26A/S26B/S26C PF553_04550 IPR039418 LexA-like PF553_04550 IPR001387 Cro/C1-type helix-turn-helix domain PF553_04550 IPR010982 Lambda repressor-like, DNA-binding domain superfamily PF553_04550 IPR036286 LexA/Signal peptidase-like superfamily PF553_04595 IPR001525 C-5 cytosine methyltransferase PF553_04595 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase PF553_04605 IPR027417 P-loop containing nucleoside triphosphate hydrolase PF553_04605 IPR002611 IstB-like ATP-binding protein PF553_04605 IPR003593 AAA+ ATPase domain PF553_04675 IPR009739 Lysozyme inhibitor LprI, N-terminal PF553_04840 IPR022634 DNA polymerase III, beta sliding clamp, N-terminal PF553_04840 IPR001001 DNA polymerase III, beta sliding clamp PF553_04840 IPR022637 DNA polymerase III, beta sliding clamp, central PF553_04840 IPR022635 DNA polymerase III, beta sliding clamp, C-terminal PF553_04905 IPR025668 Transposase DDE domain PF553_04915 IPR011010 DNA breaking-rejoining enzyme, catalytic core PF553_04915 IPR010998 Integrase/recombinase, N-terminal PF553_04915 IPR025166 Integrase, DNA-binding domain PF553_04915 IPR038488 Integrase, DNA-binding domain superfamily PF553_04915 IPR002104 Integrase, catalytic domain PF553_04915 IPR013762 Integrase-like, catalytic domain superfamily PF553_04960 IPR000424 Primosome PriB/single-strand DNA-binding PF553_04960 IPR012340 Nucleic acid-binding, OB-fold PF553_04960 IPR011344 Single-stranded DNA-binding protein PF553_05000 IPR024474 Zinc-finger binding domain of transposase IS66 PF553_05000 IPR039552 Transposase IS66, C-terminal PF553_05000 IPR004291 Transposase, IS66 PF553_05000 IPR024463 Transposase TnpC, homeodomain PF553_05010 IPR009057 Homeobox-like domain superfamily PF553_05015 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase PF553_05015 IPR003356 DNA methylase, adenine-specific PF553_05015 IPR038333 N6 adenine-specific DNA methyltransferase, N-terminal domain superfamily PF553_05030 IPR040980 SWI2/SNF2 ATPase PF553_05030 IPR004473 Restriction endonuclease, type I, HsdR PF553_05030 IPR014001 Helicase superfamily 1/2, ATP-binding domain PF553_05030 IPR021810 Protein of unknown function DUF3387 PF553_05030 IPR007409 Restriction endonuclease, type I, HsdR, N-terminal PF553_05030 IPR027417 P-loop containing nucleoside triphosphate hydrolase PF553_05040 IPR024463 Transposase TnpC, homeodomain PF553_05040 IPR024474 Zinc-finger binding domain of transposase IS66 PF553_05040 IPR004291 Transposase, IS66 PF553_05040 IPR039552 Transposase IS66, C-terminal PF553_05055 IPR009057 Homeobox-like domain superfamily PF553_05065 IPR004291 Transposase, IS66 PF553_05065 IPR039552 Transposase IS66, C-terminal PF553_05065 IPR024463 Transposase TnpC, homeodomain PF553_05065 IPR024474 Zinc-finger binding domain of transposase IS66 PF553_05070 IPR022749 N6 adenine-specific DNA methyltransferase, N-terminal domain PF553_05070 IPR038333 N6 adenine-specific DNA methyltransferase, N-terminal domain superfamily PF553_05070 IPR003356 DNA methylase, adenine-specific PF553_05070 IPR002052 DNA methylase, N-6 adenine-specific, conserved site PF553_05070 IPR004546 Restriction endonuclease, type I, HsdM PF553_05070 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase PF553_05100 IPR005828 Major facilitator, sugar transporter-like PF553_05100 IPR036259 MFS transporter superfamily PF553_05100 IPR005829 Sugar transporter, conserved site PF553_05100 IPR020846 Major facilitator superfamily domain PF553_05160 IPR004754 Amino acid antiporter PF553_05160 IPR002293 Amino acid/polyamine transporter I PF553_05165 IPR003726 Homocysteine-binding domain PF553_05165 IPR036589 Homocysteine-binding domain superfamily PF553_05165 IPR017226 Betaine-homocysteine S-methyltransferase, BHMT PF553_05175 IPR006231 Malate:quinone-oxidoreductase PF553_05175 IPR036188 FAD/NAD(P)-binding domain superfamily PF553_05180 IPR009057 Homeobox-like domain superfamily PF553_05190 IPR024463 Transposase TnpC, homeodomain PF553_05190 IPR024474 Zinc-finger binding domain of transposase IS66 PF553_05190 IPR004291 Transposase, IS66 PF553_05190 IPR039552 Transposase IS66, C-terminal PF553_05195 IPR011533 Oxygen-dependent choline dehydrogenase PF553_05195 IPR036188 FAD/NAD(P)-binding domain superfamily PF553_05195 IPR027424 Glucose Oxidase, domain 2 PF553_05195 IPR012132 Glucose-methanol-choline oxidoreductase PF553_05195 IPR000172 Glucose-methanol-choline oxidoreductase, N-terminal PF553_05195 IPR007867 Glucose-methanol-choline oxidoreductase, C-terminal PF553_05200 IPR016160 Aldehyde dehydrogenase, cysteine active site PF553_05200 IPR011264 Betaine aldehyde dehydrogenase PF553_05200 IPR015590 Aldehyde dehydrogenase domain PF553_05200 IPR016162 Aldehyde dehydrogenase, N-terminal PF553_05200 IPR029510 Aldehyde dehydrogenase, glutamic acid active site PF553_05200 IPR016161 Aldehyde/histidinol dehydrogenase PF553_05200 IPR016163 Aldehyde dehydrogenase, C-terminal PF553_05205 IPR001647 DNA-binding HTH domain, TetR-type PF553_05205 IPR017757 Transcriptional repressor BetI PF553_05205 IPR039538 BetI-type transcriptional repressor, C-terminal PF553_05205 IPR009057 Homeobox-like domain superfamily PF553_05205 IPR036271 Tetracyclin repressor-like, C-terminal domain superfamily PF553_05210 IPR018093 BCCT transporter, conserved site PF553_05210 IPR000060 BCCT transporter family PF553_05215 IPR018093 BCCT transporter, conserved site PF553_05215 IPR000060 BCCT transporter family PF553_05225 IPR040170 Cytosolic acyl coenzyme A thioester hydrolase PF553_05225 IPR033120 Hotdog acyl-CoA thioesterase (ACOT)-type domain PF553_05225 IPR029069 HotDog domain superfamily PF553_05225 IPR006683 Thioesterase domain PF553_05235 IPR011629 Cobalamin (vitamin B12) biosynthesis CobW-like, C-terminal PF553_05235 IPR003495 CobW/HypB/UreG, nucleotide-binding domain PF553_05235 IPR027417 P-loop containing nucleoside triphosphate hydrolase PF553_05240 IPR023954 C4-dicarboxylate transport protein PF553_05240 IPR036458 Sodium:dicarboxylate symporter superfamily PF553_05240 IPR018107 Sodium:dicarboxylate symporter, conserved site PF553_05240 IPR001991 Sodium:dicarboxylate symporter PF553_05245 IPR009822 YaeQ PF553_05245 IPR038590 YaeQ superfamily PF553_05245 IPR011335 Restriction endonuclease type II-like PF553_05250 IPR001179 FKBP-type peptidyl-prolyl cis-trans isomerase domain PF553_05255 IPR011330 Glycoside hydrolase/deacetylase, beta/alpha-barrel PF553_05255 IPR032772 Poly-beta-1,6-N-acetyl-D-glucosamine N-deacetylase PgaB, C-terminal PF553_05255 IPR023854 Poly-beta-1,6-N-acetyl-D-glucosamine N-deacetylase PgaB PF553_05255 IPR002509 NodB homology domain PF553_05260 IPR023853 Poly-beta-1,6 N-acetyl-D-glucosamine synthase PgaC/IcaA PF553_05260 IPR001173 Glycosyltransferase 2-like PF553_05260 IPR029044 Nucleotide-diphospho-sugar transferases PF553_05270 IPR022852 Carnitinyl-CoA dehydratase PF553_05270 IPR029045 ClpP/crotonase-like domain superfamily PF553_05270 IPR018376 Enoyl-CoA hydratase/isomerase, conserved site PF553_05270 IPR001753 Enoyl-CoA hydratase/isomerase PF553_05270 IPR014748 Enoyl-CoA hydratase, C-terminal PF553_05285 IPR029016 GAF-like domain superfamily PF553_05285 IPR014757 Transcription regulator IclR, C-terminal PF553_05285 IPR005471 Transcription regulator IclR, N-terminal PF553_05285 IPR036388 Winged helix-like DNA-binding domain superfamily PF553_05285 IPR036390 Winged helix DNA-binding domain superfamily PF553_05290 IPR036922 Rieske [2Fe-2S] iron-sulphur domain superfamily PF553_05290 IPR017941 Rieske [2Fe-2S] iron-sulphur domain PF553_05300 IPR036922 Rieske [2Fe-2S] iron-sulphur domain superfamily PF553_05300 IPR017941 Rieske [2Fe-2S] iron-sulphur domain PF553_05305 IPR020904 Short-chain dehydrogenase/reductase, conserved site PF553_05305 IPR036291 NAD(P)-binding domain superfamily PF553_05305 IPR002347 Short-chain dehydrogenase/reductase SDR PF553_05310 IPR000486 Extradiol ring-cleavage dioxygenase, class I /II PF553_05310 IPR037523 Vicinal oxygen chelate (VOC) domain PF553_05310 IPR004360 Glyoxalase/fosfomycin resistance/dioxygenase domain PF553_05310 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase PF553_05310 IPR017626 2,3-dihydroxybiphenyl 1,2-dioxygenase PF553_05315 IPR036188 FAD/NAD(P)-binding domain superfamily PF553_05315 IPR028202 Reductase, C-terminal PF553_05315 IPR016156 FAD/NAD-linked reductase, dimerisation domain superfamily PF553_05315 IPR023753 FAD/NAD(P)-binding domain PF553_05320 IPR020846 Major facilitator superfamily domain PF553_05320 IPR011701 Major facilitator superfamily PF553_05320 IPR036259 MFS transporter superfamily PF553_05320 IPR000849 Sugar phosphate transporter PF553_05330 IPR000073 Alpha/beta hydrolase fold-1 PF553_05330 IPR029058 Alpha/Beta hydrolase fold PF553_05335 IPR002347 Short-chain dehydrogenase/reductase SDR PF553_05335 IPR020904 Short-chain dehydrogenase/reductase, conserved site PF553_05335 IPR036291 NAD(P)-binding domain superfamily PF553_05340 IPR005106 Aspartate/homoserine dehydrogenase, NAD-binding PF553_05340 IPR020626 L-aspartate dehydrogenase, prokaryotic PF553_05340 IPR011182 L-aspartate dehydrogenase PF553_05340 IPR036291 NAD(P)-binding domain superfamily PF553_05340 IPR002811 Aspartate dehydrogenase PF553_05345 IPR011264 Betaine aldehyde dehydrogenase PF553_05345 IPR029510 Aldehyde dehydrogenase, glutamic acid active site PF553_05345 IPR016160 Aldehyde dehydrogenase, cysteine active site PF553_05345 IPR016161 Aldehyde/histidinol dehydrogenase PF553_05345 IPR016163 Aldehyde dehydrogenase, C-terminal PF553_05345 IPR015590 Aldehyde dehydrogenase domain PF553_05345 IPR016162 Aldehyde dehydrogenase, N-terminal PF553_05350 IPR011766 Thiamine pyrophosphate enzyme, C-terminal TPP-binding PF553_05350 IPR012846 Acetolactate synthase, large subunit, biosynthetic PF553_05350 IPR012000 Thiamine pyrophosphate enzyme, central domain PF553_05350 IPR012001 Thiamine pyrophosphate enzyme, N-terminal TPP-binding domain PF553_05350 IPR039368 Acetolactate synthase large subunit, TPP binding domain PF553_05350 IPR029035 DHS-like NAD/FAD-binding domain superfamily PF553_05350 IPR029061 Thiamin diphosphate-binding fold PF553_05350 IPR000399 TPP-binding enzyme, conserved site PF553_05360 IPR005829 Sugar transporter, conserved site PF553_05360 IPR036259 MFS transporter superfamily PF553_05360 IPR020846 Major facilitator superfamily domain PF553_05360 IPR011701 Major facilitator superfamily PF553_05365 IPR036821 Peptide deformylase superfamily PF553_05365 IPR023635 Peptide deformylase PF553_05370 IPR015868 Glutaminase PF553_05370 IPR002645 STAS domain PF553_05370 IPR036513 STAS domain superfamily PF553_05370 IPR012338 Beta-lactamase/transpeptidase-like PF553_05375 IPR003313 AraC-type arabinose-binding/dimerisation domain PF553_05375 IPR009057 Homeobox-like domain superfamily PF553_05375 IPR037923 Transcription regulator HTH-like PF553_05375 IPR018060 DNA binding HTH domain, AraC-type PF553_05375 IPR020449 Transcription regulator HTH, AraC- type PF553_05375 IPR018062 HTH domain AraC-type, conserved site PF553_05380 IPR020846 Major facilitator superfamily domain PF553_05380 IPR036259 MFS transporter superfamily PF553_05380 IPR011701 Major facilitator superfamily PF553_05385 IPR018052 Aldose 1-epimerase, conserved site PF553_05385 IPR015443 Aldose 1-epimerase PF553_05385 IPR008183 Aldose 1-/Glucose-6-phosphate 1-epimerase PF553_05385 IPR011013 Galactose mutarotase-like domain superfamily PF553_05385 IPR014718 Glycoside hydrolase-type carbohydrate-binding PF553_05395 IPR036388 Winged helix-like DNA-binding domain superfamily PF553_05395 IPR036390 Winged helix DNA-binding domain superfamily PF553_05395 IPR000847 Transcription regulator HTH, LysR PF553_05395 IPR005119 LysR, substrate-binding PF553_05400 IPR036291 NAD(P)-binding domain superfamily PF553_05400 IPR020904 Short-chain dehydrogenase/reductase, conserved site PF553_05400 IPR002347 Short-chain dehydrogenase/reductase SDR PF553_05405 IPR011701 Major facilitator superfamily PF553_05405 IPR020846 Major facilitator superfamily domain PF553_05405 IPR036259 MFS transporter superfamily PF553_05410 IPR005474 Transketolase, N-terminal PF553_05410 IPR029061 Thiamin diphosphate-binding fold PF553_05415 IPR033248 Transketolase, C-terminal domain PF553_05415 IPR005475 Transketolase-like, pyrimidine-binding domain PF553_05415 IPR029061 Thiamin diphosphate-binding fold PF553_05415 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II PF553_05420 IPR003759 Cobalamin (vitamin B12)-binding module, cap domain PF553_05420 IPR006158 Cobalamin (vitamin B12)-binding domain PF553_05420 IPR036724 Cobalamin-binding domain superfamily PF553_05420 IPR011005 Dihydropteroate synthase-like PF553_05420 IPR003726 Homocysteine-binding domain PF553_05420 IPR036589 Homocysteine-binding domain superfamily PF553_05420 IPR033706 Methionine synthase, B12-binding domain PF553_05420 IPR011822 Cobalamin-dependent methionine synthase PF553_05420 IPR036594 Methionine synthase domain PF553_05420 IPR000489 Pterin-binding domain PF553_05420 IPR004223 Vitamin B12-dependent methionine synthase, activation domain PF553_05420 IPR037010 Vitamin B12-dependent methionine synthase, activation domain superfamily PF553_05425 IPR001204 Phosphate transporter PF553_05430 IPR000634 Serine/threonine dehydratase, pyridoxal-phosphate-binding site PF553_05430 IPR036052 Tryptophan synthase beta subunit-like PLP-dependent enzyme PF553_05430 IPR011780 D-serine ammonia-lyase PF553_05430 IPR001926 Pyridoxal-phosphate dependent enzyme PF553_05445 IPR005532 Sulfatase-modifying factor enzyme PF553_05445 IPR042095 Sulfatase-modifying factor enzyme superfamily PF553_05445 IPR016187 C-type lectin fold PF553_05450 IPR017850 Alkaline-phosphatase-like, core domain superfamily PF553_05450 IPR024607 Sulfatase, conserved site PF553_05450 IPR000917 Sulfatase, N-terminal PF553_05460 IPR035903 HesB-like domain superfamily PF553_05460 IPR034904 Fe-S cluster assembly domain superfamily PF553_05460 IPR001075 NIF system FeS cluster assembly, NifU, C-terminal PF553_05460 IPR017726 Fe/S biogenesis protein NfuA PF553_05460 IPR000361 FeS cluster biogenesis PF553_05470 IPR010105 TonB-dependent siderophore receptor PF553_05470 IPR039426 Vitamin B12 transporter BtuB-like PF553_05470 IPR012910 TonB-dependent receptor, plug domain PF553_05470 IPR037066 TonB-dependent receptor, plug domain superfamily PF553_05470 IPR000531 TonB-dependent receptor-like, beta-barrel PF553_05470 IPR036942 TonB-dependent receptor-like, beta-barrel domain superfamily PF553_05470 IPR010917 TonB-dependent receptor, conserved site PF553_05480 IPR000639 Epoxide hydrolase-like PF553_05480 IPR000073 Alpha/beta hydrolase fold-1 PF553_05480 IPR029058 Alpha/Beta hydrolase fold PF553_05485 IPR001765 Carbonic anhydrase PF553_05485 IPR015892 Carbonic anhydrase, prokaryotic-like, conserved site PF553_05485 IPR036874 Carbonic anhydrase superfamily PF553_05490 IPR013830 SGNH hydrolase-type esterase domain PF553_05490 IPR036514 SGNH hydrolase superfamily PF553_05495 IPR027417 P-loop containing nucleoside triphosphate hydrolase PF553_05495 IPR017871 ABC transporter, conserved site PF553_05495 IPR003593 AAA+ ATPase domain PF553_05495 IPR003439 ABC transporter-like PF553_05500 IPR038766 Membrane component of ABC transporter, predicted PF553_05505 IPR022764 Peptidase S54, rhomboid domain PF553_05505 IPR035952 Rhomboid-like superfamily PF553_05510 IPR036950 Penicillin binding protein transglycosylase domain PF553_05510 IPR001264 Glycosyl transferase, family 51 PF553_05510 IPR023346 Lysozyme-like domain superfamily PF553_05510 IPR011812 Biosynthetic peptidoglycan transglycosylase PF553_05515 IPR025198 Polyphosphate kinase N-terminal domain PF553_05515 IPR036832 Polyphosphate kinase N-terminal domain superfamily PF553_05515 IPR025200 Polyphosphate kinase C-terminal domain 2 PF553_05515 IPR036830 Polyphosphate kinase middle domain superfamily PF553_05515 IPR024953 Polyphosphate kinase middle domain PF553_05515 IPR041108 Polyphosphate kinase, C-terminal domain 1 PF553_05515 IPR003414 Polyphosphate kinase PF553_05530 IPR036390 Winged helix DNA-binding domain superfamily PF553_05530 IPR036388 Winged helix-like DNA-binding domain superfamily PF553_05530 IPR005119 LysR, substrate-binding PF553_05530 IPR000847 Transcription regulator HTH, LysR PF553_05535 IPR029058 Alpha/Beta hydrolase fold PF553_05535 IPR000073 Alpha/beta hydrolase fold-1 PF553_05535 IPR011942 Poly(3-hydroxyalkanoate) depolymerase PF553_05540 IPR036188 FAD/NAD(P)-binding domain superfamily PF553_05540 IPR023753 FAD/NAD(P)-binding domain PF553_05540 IPR041364 Rubredoxin binding domain PF553_05545 IPR018527 Rubredoxin, iron-binding site PF553_05545 IPR024935 Rubredoxin domain PF553_05545 IPR024934 Rubredoxin-like domain PF553_05545 IPR024922 Rubredoxin PF553_05560 IPR004364 Aminoacyl-tRNA synthetase, class II (D/K/N) PF553_05560 IPR006195 Aminoacyl-tRNA synthetase, class II PF553_05560 IPR002313 Lysine-tRNA ligase, class II PF553_05560 IPR018149 Lysyl-tRNA synthetase, class II, C-terminal PF553_05560 IPR012340 Nucleic acid-binding, OB-fold PF553_05560 IPR004365 OB-fold nucleic acid binding domain, AA-tRNA synthetase-type PF553_05565 IPR038636 Capsule assembly protein Wzi superfamily PF553_05565 IPR026950 Capsule assembly protein Wzi PF553_05575 IPR002500 Phosphoadenosine phosphosulphate reductase PF553_05575 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold PF553_05575 IPR011784 Sulphate adenylyltransferase, small subunit PF553_05580 IPR002891 Adenylyl-sulfate kinase PF553_05580 IPR041757 Sulfate adenylyltransferase subunit CysN, GTP-binding domain PF553_05580 IPR031157 Tr-type G domain, conserved site PF553_05580 IPR027417 P-loop containing nucleoside triphosphate hydrolase PF553_05580 IPR005225 Small GTP-binding protein domain PF553_05580 IPR011779 Sulphate adenylyltransferase, large subunit PF553_05580 IPR000795 Transcription factor, GTP-binding domain PF553_05580 IPR009000 Translation protein, beta-barrel domain superfamily PF553_05580 IPR009001 Translation elongation factor EF1A/initiation factor IF2gamma, C-terminal PF553_05595 IPR004680 Citrate transporter-like domain PF553_05595 IPR014738 Citrate transporter PF553_05600 IPR005170 Transporter-associated domain PF553_05600 IPR036318 FAD-binding, type PCMH-like superfamily PF553_05600 IPR016169 FAD-binding, type PCMH, subdomain 2 PF553_05600 IPR000644 CBS domain PF553_05600 IPR002550 CNNM, transmembrane domain PF553_05605 IPR005119 LysR, substrate-binding PF553_05605 IPR000847 Transcription regulator HTH, LysR PF553_05605 IPR036388 Winged helix-like DNA-binding domain superfamily PF553_05605 IPR036390 Winged helix DNA-binding domain superfamily PF553_05610 IPR040442 Pyruvate kinase-like domain superfamily PF553_05610 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain superfamily PF553_05610 IPR039556 ICL/PEPM domain PF553_05610 IPR006254 Isocitrate lyase PF553_05625 IPR002669 Urease accessory protein UreD PF553_05630 IPR012010 Urease, gamma subunit PF553_05630 IPR002026 Urease, gamma/gamma-beta subunit PF553_05630 IPR036463 Urease, gamma subunit superfamily PF553_05635 IPR036461 Urease, beta subunit superfamily PF553_05635 IPR002019 Urease, beta subunit PF553_05640 IPR017951 Urease alpha subunit, C-terminal PF553_05640 IPR032466 Metal-dependent hydrolase PF553_05640 IPR029754 Urease nickel binding site PF553_05640 IPR005848 Urease, alpha subunit PF553_05640 IPR006680 Amidohydrolase-related PF553_05640 IPR011612 Urease alpha-subunit, N-terminal domain PF553_05640 IPR011059 Metal-dependent hydrolase, composite domain superfamily PF553_05640 IPR017950 Urease active site PF553_05645 IPR012406 Urease accessory protein UreE PF553_05645 IPR007864 Urease accessory protein UreE, C-terminal domain PF553_05645 IPR036675 UreE, C-terminal domain superfamily PF553_05645 IPR004029 UreE urease accessory, N-terminal PF553_05645 IPR036118 UreE urease accessory, N-terminal domain superfamily PF553_05650 IPR002639 Urease accessory protein UreF PF553_05650 IPR038277 UreF domain superfamily PF553_05655 IPR027417 P-loop containing nucleoside triphosphate hydrolase PF553_05655 IPR003495 CobW/HypB/UreG, nucleotide-binding domain PF553_05655 IPR004400 Urease accessory protein UreG PF553_05665 IPR004398 RNA methyltransferase, RsmD PF553_05665 IPR002052 DNA methylase, N-6 adenine-specific, conserved site PF553_05665 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase PF553_05670 IPR001460 Penicillin-binding protein, transpeptidase PF553_05670 IPR036138 Penicillin-binding protein, dimerisation domain superfamily PF553_05670 IPR017790 Penicillin-binding protein 2 PF553_05670 IPR012338 Beta-lactamase/transpeptidase-like PF553_05670 IPR005311 Penicillin-binding protein, dimerisation domain PF553_05685 IPR006259 Adenylate kinase subfamily PF553_05685 IPR033690 Adenylate kinase, conserved site PF553_05685 IPR007862 Adenylate kinase, active site lid domain PF553_05685 IPR027417 P-loop containing nucleoside triphosphate hydrolase PF553_05685 IPR000850 Adenylate kinase/UMP-CMP kinase PF553_05695 IPR003651 Endonuclease III-like, iron-sulphur cluster loop motif PF553_05695 IPR011257 DNA glycosylase PF553_05695 IPR004036 Endonuclease III-like, conserved site-2 PF553_05695 IPR004035 Endonuclease III, iron-sulphur binding site PF553_05695 IPR003265 HhH-GPD domain PF553_05695 IPR000445 Helix-hairpin-helix motif PF553_05695 IPR023170 Helix-turn-helix, base-excision DNA repair, C-terminal PF553_05695 IPR005759 Endonuclease III PF553_05700 IPR007202 4Fe-4S domain PF553_05700 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain PF553_05700 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site PF553_05700 IPR011005 Dihydropteroate synthase-like PF553_05700 IPR010207 Ion-translocating oxidoreductase complex, RnfB/RsxB PF553_05700 IPR016463 Electron transport complex, RnfB/RsxB, Proteobacteria PF553_05705 IPR033922 NAD(P) binding domain of glutamate dehydrogenase PF553_05705 IPR036291 NAD(P)-binding domain superfamily PF553_05705 IPR014362 Glutamate dehydrogenase PF553_05705 IPR006097 Glutamate/phenylalanine/leucine/valine dehydrogenase, dimerisation domain PF553_05705 IPR006096 Glutamate/phenylalanine/leucine/valine dehydrogenase, C-terminal PF553_05705 IPR033524 Leu/Phe/Val dehydrogenases active site PF553_05705 IPR006095 Glutamate/phenylalanine/leucine/valine dehydrogenase PF553_05715 IPR014436 Extradiol aromatic ring-opening dioxygenase, DODA-type PF553_05715 IPR004183 Extradiol ring-cleavage dioxygenase, class III enzyme, subunit B PF553_05720 IPR029028 Alpha/beta knot methyltransferases PF553_05720 IPR003742 RNA methyltransferase RlmH PF553_05720 IPR029026 tRNA (guanine-N1-)-methyltransferase, N-terminal PF553_05725 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup PF553_05725 IPR020568 Ribosomal protein S5 domain 2-type fold PF553_05725 IPR015947 PUA-like superfamily PF553_05725 IPR008268 Peptidase S16, active site PF553_05725 IPR027417 P-loop containing nucleoside triphosphate hydrolase PF553_05725 IPR003111 Lon, substrate-binding domain PF553_05725 IPR027065 Lon protease PF553_05725 IPR008269 Peptidase S16, Lon proteolytic domain PF553_05725 IPR027543 Lon protease, bacterial PF553_05725 IPR003959 ATPase, AAA-type, core PF553_05725 IPR003593 AAA+ ATPase domain PF553_05725 IPR004815 Lon protease, bacterial/eukaryotic-type PF553_05730 IPR008640 Head domain of trimeric autotransporter adhesin PF553_05730 IPR008635 Coiled stalk of trimeric autotransporter adhesin PF553_05730 IPR024973 ESPR domain PF553_05730 IPR011049 Serralysin-like metalloprotease, C-terminal PF553_05730 IPR005594 YadA-like, C-terminal PF553_05735 IPR006664 Outer membrane protein, bacterial PF553_05735 IPR036737 OmpA-like domain superfamily PF553_05735 IPR006665 OmpA-like domain PF553_05735 IPR007450 Lipoprotein SmpA/OmlA PF553_05735 IPR037873 BamE-like PF553_05740 IPR002698 5-formyltetrahydrofolate cyclo-ligase PF553_05740 IPR024185 5-formyltetrahydrofolate cyclo-ligase-like domain superfamily PF553_05740 IPR037171 NagB/RpiA transferase-like PF553_06050 IPR039552 Transposase IS66, C-terminal PF553_06050 IPR004291 Transposase, IS66 PF553_06050 IPR024463 Transposase TnpC, homeodomain PF553_06050 IPR024474 Zinc-finger binding domain of transposase IS66 PF553_06060 IPR009057 Homeobox-like domain superfamily PF553_06065 IPR005569 Arc-like DNA binding domain PF553_06065 IPR013321 Arc-type ribbon-helix-helix PF553_06065 IPR010985 Ribbon-helix-helix PF553_06130 IPR002104 Integrase, catalytic domain PF553_06130 IPR013762 Integrase-like, catalytic domain superfamily PF553_06130 IPR010998 Integrase/recombinase, N-terminal PF553_06130 IPR025166 Integrase, DNA-binding domain PF553_06130 IPR011010 DNA breaking-rejoining enzyme, catalytic core PF553_06130 IPR038488 Integrase, DNA-binding domain superfamily PF553_06140 IPR005279 Dipeptide/tripeptide permease PF553_06140 IPR020846 Major facilitator superfamily domain PF553_06140 IPR036259 MFS transporter superfamily PF553_06140 IPR000109 Proton-dependent oligopeptide transporter family PF553_06140 IPR018456 PTR2 family proton/oligopeptide symporter, conserved site PF553_06145 IPR014746 Glutamine synthetase/guanido kinase, catalytic domain PF553_06145 IPR008147 Glutamine synthetase, beta-Grasp domain PF553_06145 IPR036651 Glutamine synthetase, N-terminal domain superfamily PF553_06145 IPR027302 Glutamine synthetase, N-terminal conserved site PF553_06145 IPR001637 Glutamine synthetase class-I, adenylation site PF553_06145 IPR004809 Glutamine synthetase type I PF553_06145 IPR027303 Glutamine synthetase, glycine-rich site PF553_06145 IPR008146 Glutamine synthetase, catalytic domain PF553_06150 IPR028978 Chorismate pyruvate-lyase/UbiC transcription regulator-associated domain superfamily PF553_06150 IPR007440 Chorismate--pyruvate lyase PF553_06155 IPR006370 4-hydroxybenzoate polyprenyltransferase-like PF553_06155 IPR039653 Prenyltransferase PF553_06155 IPR000537 UbiA prenyltransferase family PF553_06190 IPR001189 Manganese/iron superoxide dismutase PF553_06190 IPR019833 Manganese/iron superoxide dismutase, binding site PF553_06190 IPR019832 Manganese/iron superoxide dismutase, C-terminal PF553_06190 IPR019831 Manganese/iron superoxide dismutase, N-terminal PF553_06190 IPR036324 Manganese/iron superoxide dismutase, N-terminal domain superfamily PF553_06190 IPR036314 Manganese/iron superoxide dismutase, C-terminal domain superfamily PF553_06195 IPR002678 GTP cyclohydrolase 1 type 2/Nif3 PF553_06195 IPR036069 GTP cyclohydrolase 1 type 2/Nif3 superfamily PF553_06200 IPR001940 Peptidase S1C PF553_06200 IPR009003 Peptidase S1, PA clan PF553_06200 IPR036034 PDZ superfamily PF553_06200 IPR001478 PDZ domain PF553_06200 IPR011782 Peptidase S1C, Do PF553_06205 IPR012006 tRNA nucleotidyltransferase, proteobacteria PF553_06205 IPR003607 HD/PDEase domain PF553_06205 IPR002646 Poly A polymerase, head domain PF553_06205 IPR032828 tRNA nucleotidyltransferase/poly(A) polymerase, RNA and SrmB- binding domain PF553_06210 IPR002505 Phosphate acetyl/butaryl transferase PF553_06210 IPR042113 Phosphate acetyltransferase, domain 1 PF553_06210 IPR036291 NAD(P)-binding domain superfamily PF553_06210 IPR042112 Phosphate acetyltransferase, domain 2 PF553_06210 IPR012302 Malic enzyme, NAD-binding PF553_06210 IPR037062 Malic enzyme, N-terminal domain superfamily PF553_06210 IPR012301 Malic enzyme, N-terminal domain PF553_06210 IPR015884 Malic enzyme, conserved site PF553_06210 IPR012188 NAD(P)-dependent malic enzyme PF553_06215 IPR001633 EAL domain PF553_06215 IPR035919 EAL domain superfamily PF553_06215 IPR000160 GGDEF domain PF553_06215 IPR005330 MHYT domain PF553_06215 IPR029787 Nucleotide cyclase PF553_06220 IPR029028 Alpha/beta knot methyltransferases PF553_06220 IPR015947 PUA-like superfamily PF553_06220 IPR006700 Ribosomal RNA small subunit methyltransferase E PF553_06220 IPR029026 tRNA (guanine-N1-)-methyltransferase, N-terminal PF553_06225 IPR004620 5,10-methylenetetrahydrofolate reductase PF553_06225 IPR003171 Methylenetetrahydrofolate reductase PF553_06225 IPR029041 FAD-linked oxidoreductase-like PF553_06230 IPR020082 S-adenosyl-L-homocysteine hydrolase, conserved site PF553_06230 IPR036291 NAD(P)-binding domain superfamily PF553_06230 IPR042172 Adenosylhomocysteinase-like superfamily PF553_06230 IPR000043 Adenosylhomocysteinase-like PF553_06230 IPR015878 S-adenosyl-L-homocysteine hydrolase, NAD binding domain PF553_06245 IPR036250 Acyl-CoA dehydrogenase-like, C-terminal PF553_06245 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal PF553_06245 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal PF553_06245 IPR037069 Acyl-CoA dehydrogenase/oxidase, N-terminal domain superfamily PF553_06245 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily PF553_06245 IPR015396 Acyl-CoA dehydrogenase, C-termina, bacterial type PF553_06250 IPR007197 Radical SAM PF553_06250 IPR003698 Lipoyl synthase PF553_06250 IPR006638 Elp3/MiaB/NifB PF553_06250 IPR013785 Aldolase-type TIM barrel PF553_06255 IPR023753 FAD/NAD(P)-binding domain PF553_06255 IPR016156 FAD/NAD-linked reductase, dimerisation domain superfamily PF553_06255 IPR001100 Pyridine nucleotide-disulphide oxidoreductase, class I PF553_06255 IPR004099 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain PF553_06255 IPR022962 Soluble pyridine nucleotide transhydrogenase PF553_06255 IPR036188 FAD/NAD(P)-binding domain superfamily PF553_06265 IPR011701 Major facilitator superfamily PF553_06265 IPR020846 Major facilitator superfamily domain PF553_06265 IPR036259 MFS transporter superfamily PF553_06265 IPR004737 Nitrate transporter PF553_06275 IPR002467 Peptidase M24A, methionine aminopeptidase, subfamily 1 PF553_06275 IPR000994 Peptidase M24 PF553_06275 IPR036005 Creatinase/aminopeptidase-like PF553_06275 IPR001714 Peptidase M24, methionine aminopeptidase PF553_06280 IPR001865 Ribosomal protein S2 PF553_06280 IPR005706 Ribosomal protein S2, bacteria/mitochondria/plastid PF553_06280 IPR018130 Ribosomal protein S2, conserved site PF553_06280 IPR023591 Ribosomal protein S2, flavodoxin-like domain superfamily PF553_06285 IPR036402 Elongation factor Ts, dimerisation domain superfamily PF553_06285 IPR001816 Translation elongation factor EFTs/EF1B PF553_06285 IPR014039 Translation elongation factor EFTs/EF1B, dimerisation PF553_06285 IPR018101 Translation elongation factor Ts, conserved site PF553_06285 IPR009060 UBA-like superfamily PF553_06295 IPR011051 RmlC-like cupin domain superfamily PF553_06295 IPR018062 HTH domain AraC-type, conserved site PF553_06295 IPR009057 Homeobox-like domain superfamily PF553_06295 IPR018060 DNA binding HTH domain, AraC-type PF553_06315 IPR034718 Endolytic peptidoglycan transglycosylase RlpA PF553_06315 IPR009009 RlpA-like protein, double-psi beta-barrel domain PF553_06315 IPR036908 RlpA-like domain superfamily PF553_06315 IPR012997 Rare lipoprotein A PF553_06315 IPR007730 Sporulation-like domain PF553_06320 IPR023346 Lysozyme-like domain superfamily PF553_06320 IPR011757 Lytic transglycosylase MltB PF553_06320 IPR031304 Transglycosylase SLT domain 2 PF553_06325 IPR001182 Probable peptidoglycan glycosyltransferase FtsW/RodA PF553_06325 IPR011923 Probable peptidoglycan glycosyltransferase RodA/MrdB PF553_06325 IPR018365 Cell cycle, FtsW / RodA / SpoVE, conserved site PF553_06335 IPR029500 NADPH-dependent 7-cyano-7-deazaguanine reductase QueF PF553_06335 IPR016428 NADPH-dependent 7-cyano-7-deazaguanine reductase, QueF type 2 PF553_06335 IPR029139 NADPH-dependent 7-cyano-7-deazaguanine reductase, N-terminal PF553_06340 IPR000412 ABC-2 transporter PF553_06340 IPR013525 ABC-2 type transporter PF553_06345 IPR027417 P-loop containing nucleoside triphosphate hydrolase PF553_06345 IPR017871 ABC transporter, conserved site PF553_06345 IPR003439 ABC transporter-like PF553_06345 IPR003593 AAA+ ATPase domain PF553_06375 IPR039429 Serine hydroxymethyltransferase-like domain PF553_06375 IPR019798 Serine hydroxymethyltransferase, pyridoxal phosphate binding site PF553_06375 IPR001085 Serine hydroxymethyltransferase PF553_06375 IPR015421 Pyridoxal phosphate-dependent transferase, major domain PF553_06375 IPR015424 Pyridoxal phosphate-dependent transferase PF553_06375 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 PF553_06380 IPR003423 Outer membrane efflux protein PF553_06380 IPR010131 RND efflux system, outer membrane lipoprotein, NodT PF553_06385 IPR001036 Acriflavin resistance protein PF553_06385 IPR004764 Hydrophobe/amphiphile efflux-1 HAE1 PF553_06385 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains PF553_06390 IPR022824 Multidrug resistance protein MdtA PF553_06390 IPR006143 RND efflux pump, membrane fusion protein PF553_06390 IPR039562 Membrane fusion protein, biotin-lipoyl like domain PF553_06395 IPR036390 Winged helix DNA-binding domain superfamily PF553_06395 IPR000847 Transcription regulator HTH, LysR PF553_06395 IPR005119 LysR, substrate-binding PF553_06395 IPR036388 Winged helix-like DNA-binding domain superfamily PF553_06400 IPR005768 Specific amino acids and opine-binding periplasmic protein, ABC transporter PF553_06400 IPR018313 Solute-binding protein family 3, conserved site PF553_06400 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF PF553_06405 IPR010065 Amino acid ABC transporter, permease protein, 3-TM domain PF553_06405 IPR030199 Histidine transport system permease protein HisQ PF553_06405 IPR000515 ABC transporter type 1, transmembrane domain MetI-like PF553_06405 IPR035906 MetI-like superfamily PF553_06410 IPR010065 Amino acid ABC transporter, permease protein, 3-TM domain PF553_06410 IPR000515 ABC transporter type 1, transmembrane domain MetI-like PF553_06410 IPR035906 MetI-like superfamily PF553_06415 IPR030679 ABC-type amino acid transport system, ATPase component, HisP-type PF553_06415 IPR003439 ABC transporter-like PF553_06415 IPR017871 ABC transporter, conserved site PF553_06415 IPR027417 P-loop containing nucleoside triphosphate hydrolase PF553_06415 IPR003593 AAA+ ATPase domain PF553_06420 IPR000390 Small multidrug resistance protein family PF553_06425 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain PF553_06425 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site PF553_06430 IPR001539 Peptidase U32 PF553_06430 IPR032525 Peptidase family U32, C-terminal PF553_06435 IPR015424 Pyridoxal phosphate-dependent transferase PF553_06435 IPR036390 Winged helix DNA-binding domain superfamily PF553_06435 IPR036388 Winged helix-like DNA-binding domain superfamily PF553_06435 IPR000524 Transcription regulator HTH, GntR PF553_06435 IPR015421 Pyridoxal phosphate-dependent transferase, major domain PF553_06435 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 PF553_06435 IPR004839 Aminotransferase, class I/classII PF553_06440 IPR003719 Phenazine biosynthesis PhzF protein PF553_06445 IPR017938 Riboflavin synthase-like beta-barrel PF553_06445 IPR033892 Ferredoxin--NADP reductase, bacteria PF553_06445 IPR001433 Oxidoreductase FAD/NAD(P)-binding PF553_06445 IPR039261 Ferredoxin-NADP reductase (FNR), nucleotide-binding domain PF553_06445 IPR008333 Flavoprotein pyridine nucleotide cytochrome reductase-like, FAD-binding domain PF553_06445 IPR017927 FAD-binding domain, ferredoxin reductase-type PF553_06445 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase PF553_06450 IPR041369 TrmO, C-terminal PF553_06450 IPR023368 Uncharacterised protein family UPF0066, conserved site PF553_06450 IPR040372 YaeB-like PF553_06450 IPR036414 YaeB, N-terminal domain superfamily PF553_06450 IPR036413 YaeB-like superfamily PF553_06450 IPR023370 TrmO-like, N-terminal domain PF553_06480 IPR001789 Signal transduction response regulator, receiver domain PF553_06480 IPR001867 OmpR/PhoB-type DNA-binding domain PF553_06480 IPR011006 CheY-like superfamily PF553_06480 IPR036388 Winged helix-like DNA-binding domain superfamily PF553_06480 IPR039420 Transcriptional regulatory protein WalR-like PF553_06480 IPR016032 Signal transduction response regulator, C-terminal effector PF553_06485 IPR013727 Two-component sensor kinase, N-terminal PF553_06485 IPR004358 Signal transduction histidine kinase-related protein, C-terminal PF553_06485 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily PF553_06485 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain PF553_06485 IPR005467 Histidine kinase domain PF553_06485 IPR036890 Histidine kinase/HSP90-like ATPase superfamily PF553_06485 IPR003594 Histidine kinase/HSP90-like ATPase PF553_06495 IPR020476 NUDIX hydrolase PF553_06495 IPR000086 NUDIX hydrolase domain PF553_06495 IPR003561 Mutator MutT PF553_06495 IPR015797 NUDIX hydrolase-like domain superfamily PF553_06495 IPR020084 NUDIX hydrolase, conserved site PF553_06505 IPR011813 Penicillin-binding protein 1B PF553_06505 IPR028166 Bifunctional transglycosylase second domain PF553_06505 IPR001460 Penicillin-binding protein, transpeptidase PF553_06505 IPR036950 Penicillin binding protein transglycosylase domain PF553_06505 IPR012338 Beta-lactamase/transpeptidase-like PF553_06505 IPR001264 Glycosyl transferase, family 51 PF553_06505 IPR023346 Lysozyme-like domain superfamily PF553_06510 IPR017438 Inorganic polyphosphate/ATP-NAD kinase, N-terminal PF553_06510 IPR017437 ATP-NAD kinase, PpnK-type, C-terminal PF553_06510 IPR016064 NAD kinase/diacylglycerol kinase-like domain superfamily PF553_06510 IPR002504 NAD kinase PF553_06515 IPR009749 Protein of unknown function DUF1315 PF553_06520 IPR017459 Glycosyl transferase family 3, N-terminal domain PF553_06520 IPR005940 Anthranilate phosphoribosyl transferase PF553_06520 IPR036320 Glycosyl transferase family 3, N-terminal domain superfamily PF553_06520 IPR000312 Glycosyl transferase, family 3 PF553_06520 IPR035902 Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain superfamily PF553_06525 IPR036458 Sodium:dicarboxylate symporter superfamily PF553_06525 IPR018107 Sodium:dicarboxylate symporter, conserved site PF553_06525 IPR001991 Sodium:dicarboxylate symporter PF553_06525 IPR023954 C4-dicarboxylate transport protein PF553_06530 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal PF553_06530 IPR037069 Acyl-CoA dehydrogenase/oxidase, N-terminal domain superfamily PF553_06530 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal PF553_06530 IPR036250 Acyl-CoA dehydrogenase-like, C-terminal PF553_06530 IPR006091 Acyl-CoA oxidase/dehydrogenase, central domain PF553_06530 IPR006089 Acyl-CoA dehydrogenase, conserved site PF553_06530 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily PF553_06535 IPR000801 Putative esterase PF553_06535 IPR029058 Alpha/Beta hydrolase fold PF553_06540 IPR008242 Bifunctional P-protein, chorismate mutase/prephenate dehydratase PF553_06540 IPR036979 Chorismate mutase domain superfamily PF553_06540 IPR002701 Chorismate mutase II, prokaryotic-type PF553_06540 IPR010957 Gamma/beta/epsilon proteobacterial P-protein, chorismate mutase domain PF553_06540 IPR001086 Prephenate dehydratase PF553_06540 IPR018528 Prephenate dehydratase, conserved site PF553_06540 IPR002912 ACT domain PF553_06540 IPR036263 Chorismate mutase type II superfamily PF553_06545 IPR001986 Enolpyruvate transferase domain PF553_06545 IPR006264 3-phosphoshikimate 1-carboxyvinyltransferase PF553_06545 IPR036968 Enolpyruvate transferase domain superfamily PF553_06545 IPR013792 RNA 3'-terminal phosphate cyclase/enolpyruvate transferase, alpha/beta PF553_06545 IPR023193 3-phosphoshikimate 1-carboxyvinyltransferase, conserved site PF553_06555 IPR002933 Peptidase M20 PF553_06555 IPR011650 Peptidase M20, dimerisation domain PF553_06555 IPR001160 Peptidase M20C, Xaa-His dipeptidase PF553_06560 IPR001279 Metallo-beta-lactamase PF553_06560 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like PF553_06560 IPR013471 Ribonuclease Z/BN PF553_06570 IPR005583 Peroxide stress protein YaaA PF553_06580 IPR013785 Aldolase-type TIM barrel PF553_06580 IPR033983 Thiazole synthase ThiG PF553_06580 IPR008867 Thiazole synthase PF553_06590 IPR006696 Protein of unknown function DUF423 PF553_06595 IPR007630 RNA polymerase sigma-70 region 4 PF553_06595 IPR009042 RNA polymerase sigma-70 region 1.2 PF553_06595 IPR000943 RNA polymerase sigma-70 PF553_06595 IPR014284 RNA polymerase sigma-70 like domain PF553_06595 IPR013325 RNA polymerase sigma factor, region 2 PF553_06595 IPR013324 RNA polymerase sigma factor, region 3/4-like PF553_06595 IPR012759 RNA polymerase sigma factor RpoH, proteobacteria PF553_06595 IPR007627 RNA polymerase sigma-70 region 2 PF553_06610 IPR012156 Cold shock, CspA PF553_06610 IPR011129 Cold shock domain PF553_06610 IPR019844 Cold-shock (CSD) domain PF553_06610 IPR002059 Cold-shock protein, DNA-binding PF553_06610 IPR012340 Nucleic acid-binding, OB-fold PF553_06615 IPR014014 RNA helicase, DEAD-box type, Q motif PF553_06615 IPR000629 ATP-dependent RNA helicase DEAD-box, conserved site PF553_06615 IPR027417 P-loop containing nucleoside triphosphate hydrolase PF553_06615 IPR001650 Helicase, C-terminal PF553_06615 IPR014001 Helicase superfamily 1/2, ATP-binding domain PF553_06615 IPR023554 ATP-dependent RNA helicase RhlB type PF553_06615 IPR011545 DEAD/DEAH box helicase domain PF553_06625 IPR029479 Nitroreductase PF553_06625 IPR000415 Nitroreductase-like PF553_06625 IPR026021 Putative NAD(P)H nitroreductase YdjA-like PF553_06630 IPR006168 Glycerol-3-phosphate dehydrogenase, NAD-dependent PF553_06630 IPR011128 Glycerol-3-phosphate dehydrogenase, NAD-dependent, N-terminal PF553_06630 IPR006109 Glycerol-3-phosphate dehydrogenase, NAD-dependent, C-terminal PF553_06630 IPR013328 6-phosphogluconate dehydrogenase, domain 2 PF553_06630 IPR036291 NAD(P)-binding domain superfamily PF553_06630 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily PF553_06650 IPR013785 Aldolase-type TIM barrel PF553_06650 IPR005720 Dihydroorotate dehydrogenase domain PF553_06650 IPR001295 Dihydroorotate dehydrogenase, conserved site PF553_06650 IPR012135 Dihydroorotate dehydrogenase, class 1/ 2 PF553_06650 IPR005719 Dihydroorotate dehydrogenase, class 2 PF553_06655 IPR003825 Colicin V production, CvpA PF553_06660 IPR035584 Amidophosphoribosyltransferase, N-terminal PF553_06660 IPR005854 Amidophosphoribosyltransferase PF553_06660 IPR029057 Phosphoribosyltransferase-like PF553_06660 IPR000836 Phosphoribosyltransferase domain PF553_06660 IPR029055 Nucleophile aminohydrolases, N-terminal PF553_06660 IPR017932 Glutamine amidotransferase type 2 domain PF553_06675 IPR036291 NAD(P)-binding domain superfamily PF553_06675 IPR023756 Glyoxylate/hydroxypyruvate reductase B PF553_06675 IPR006140 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain PF553_06675 IPR029753 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain conserved site PF553_06675 IPR006139 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain PF553_06680 IPR001915 Peptidase M48 PF553_06680 IPR011990 Tetratricopeptide-like helical domain superfamily PF553_06680 IPR030873 Beta-barrel assembly-enhancing protease PF553_06685 IPR003789 Aspartyl/glutamyl-tRNA amidotransferase subunit B-like PF553_06685 IPR019004 Uncharacterised protein YqeY/Aim41 PF553_06685 IPR042184 YqeY/Aim41, N-terminal domain PF553_06685 IPR023168 Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase, C-terminal, domain 2 PF553_06690 IPR038380 Ribosomal protein S21 superfamily PF553_06690 IPR018278 Ribosomal protein S21, conserved site PF553_06690 IPR001911 Ribosomal protein S21 PF553_06695 IPR000905 Gcp-like domain PF553_06695 IPR017861 Kae1/TsaD family PF553_06695 IPR017860 Peptidase M22, conserved site PF553_06695 IPR022450 tRNA N6-adenosine threonylcarbamoyltransferase, TsaD PF553_06715 IPR008271 Serine/threonine-protein kinase, active site PF553_06715 IPR017441 Protein kinase, ATP binding site PF553_06715 IPR000719 Protein kinase domain PF553_06715 IPR011009 Protein kinase-like domain superfamily PF553_06715 IPR005543 PASTA domain PF553_06740 IPR005565 Haemolysin activator HlyB, C-terminal PF553_06740 IPR034746 POTRA domain PF553_06740 IPR035251 ShlB, POTRA domain PF553_06740 IPR027282 Two partner secretion pathway transporter PF553_06740 IPR013686 Polypeptide-transport-associated, ShlB-type PF553_06745 IPR008638 Filamentous haemagglutinin, N-terminal PF553_06745 IPR006914 VENN motif-containing domain PF553_06745 IPR025157 Hemagglutinin repeat PF553_06745 IPR008638 Filamentous haemagglutinin, N-terminal PF553_06745 IPR011050 Pectin lyase fold/virulence factor PF553_06745 IPR024973 ESPR domain PF553_06745 IPR006914 VENN motif-containing domain PF553_06745 IPR010069 Filamentous haemagglutinin, 20-residue x2 repeat PF553_06745 IPR012334 Pectin lyase fold PF553_06745 IPR025157 Hemagglutinin repeat PF553_06745 IPR010069 Filamentous haemagglutinin, 20-residue x2 repeat PF553_06745 IPR024973 ESPR domain PF553_06745 IPR011050 Pectin lyase fold/virulence factor PF553_06745 IPR012334 Pectin lyase fold PF553_06785 IPR036390 Winged helix DNA-binding domain superfamily PF553_06785 IPR036388 Winged helix-like DNA-binding domain superfamily PF553_06785 IPR000847 Transcription regulator HTH, LysR PF553_06785 IPR005119 LysR, substrate-binding PF553_06815 IPR005829 Sugar transporter, conserved site PF553_06815 IPR005828 Major facilitator, sugar transporter-like PF553_06815 IPR036259 MFS transporter superfamily PF553_06815 IPR004736 MFS transporter, metabolite:H symporter PF553_06815 IPR015041 Osmosensory transporter coiled coil PF553_06815 IPR036292 Proline/betaine transporter ProP, C-terminal PF553_06815 IPR020846 Major facilitator superfamily domain PF553_06820 IPR000086 NUDIX hydrolase domain PF553_06820 IPR015797 NUDIX hydrolase-like domain superfamily PF553_06850 IPR005219 Intermembrane transport protein PqiA-like, Enterobacteria-type PF553_06850 IPR007498 Intermembrane transport protein PqiA-like PF553_06855 IPR003399 Mce/MlaD PF553_06865 IPR001920 Asp/Glu racemase PF553_06865 IPR015942 Asp/Glu/hydantoin racemase PF553_06865 IPR004380 Aspartate racemase PF553_06865 IPR033134 Asp/Glu racemase, active site 2 PF553_06865 IPR018187 Asp/Glu racemase, active site 1 PF553_06870 IPR000620 EamA domain PF553_06880 IPR011041 Soluble quinoprotein glucose/sorbosone dehydrogenase PF553_06880 IPR012938 Glucose/Sorbosone dehydrogenase PF553_06880 IPR011042 Six-bladed beta-propeller, TolB-like PF553_06900 IPR036458 Sodium:dicarboxylate symporter superfamily PF553_06900 IPR018107 Sodium:dicarboxylate symporter, conserved site PF553_06900 IPR001991 Sodium:dicarboxylate symporter PF553_06900 IPR023954 C4-dicarboxylate transport protein PF553_06910 IPR017782 Hydroxyacylglutathione hydrolase PF553_06910 IPR032282 Hydroxyacylglutathione hydrolase, C-terminal domain PF553_06910 IPR035680 Hydroxyacylglutathione hydrolase, MBL domain PF553_06910 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like PF553_06910 IPR001279 Metallo-beta-lactamase PF553_06915 IPR035906 MetI-like superfamily PF553_06915 IPR000515 ABC transporter type 1, transmembrane domain MetI-like PF553_06920 IPR017908 ABC transporter, methionine import, ATP-binding protein, MetN, C-terminal PF553_06920 IPR017871 ABC transporter, conserved site PF553_06920 IPR026253 Methionine import ATP-binding protein MetN PF553_06920 IPR003439 ABC transporter-like PF553_06920 IPR003593 AAA+ ATPase domain PF553_06920 IPR041701 Methionine import ATP-binding protein MetN, ATP-binding cassette domain PF553_06920 IPR018449 NIL domain PF553_06920 IPR027417 P-loop containing nucleoside triphosphate hydrolase PF553_06925 IPR004872 Lipoprotein NlpA family PF553_06930 IPR011054 Rudiment single hybrid motif PF553_06930 IPR020560 Phosphoribosylglycinamide synthetase, C-domain PF553_06930 IPR037123 Phosphoribosylglycinamide synthetase, C-domain superfamily PF553_06930 IPR020559 Phosphoribosylglycinamide synthetase, conserved site PF553_06930 IPR020562 Phosphoribosylglycinamide synthetase, N-terminal PF553_06930 IPR016185 Pre-ATP-grasp domain superfamily PF553_06930 IPR020561 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain PF553_06930 IPR013815 ATP-grasp fold, subdomain 1 PF553_06930 IPR011761 ATP-grasp fold PF553_06930 IPR000115 Phosphoribosylglycinamide synthetase PF553_06935 IPR036914 Methylglyoxal synthase-like domain superfamily PF553_06935 IPR011607 Methylglyoxal synthase-like domain PF553_06935 IPR016193 Cytidine deaminase-like PF553_06935 IPR024051 AICAR transformylase, duplicated domain superfamily PF553_06935 IPR002695 Bifunctional purine biosynthesis protein PurH-like PF553_06940 IPR005412 DNA-binding protein Fis PF553_06940 IPR009057 Homeobox-like domain superfamily PF553_06940 IPR002197 DNA binding HTH domain, Fis-type PF553_06950 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase PF553_06950 IPR004498 Ribosomal protein L11 methyltransferase PF553_06960 IPR020595 MnmG-related, conserved site PF553_06960 IPR002218 tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG-related PF553_06960 IPR004416 tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG PF553_06960 IPR036188 FAD/NAD(P)-binding domain superfamily PF553_06960 IPR026904 GidA associated domain 3 PF553_06970 IPR016450 Uncharacterised conserved protein UCP005522 PF553_06970 IPR025841 Circularly permuted ATP-grasp type 2 PF553_06980 IPR002931 Transglutaminase-like PF553_06980 IPR013589 Bacterial transglutaminase-like, N-terminal PF553_06980 IPR038765 Papain-like cysteine peptidase superfamily PF553_06990 IPR029066 PLP-binding barrel PF553_06990 IPR001608 Alanine racemase, N-terminal PF553_06990 IPR011079 Alanine racemase, C-terminal PF553_06990 IPR000821 Alanine racemase PF553_06990 IPR009006 Alanine racemase/group IV decarboxylase, C-terminal PF553_06995 IPR007692 DNA helicase, DnaB type PF553_06995 IPR007693 DNA helicase, DnaB-like, N-terminal PF553_06995 IPR016136 DNA helicase DnaB, N-terminal/DNA primase DnaG, C-terminal PF553_06995 IPR027417 P-loop containing nucleoside triphosphate hydrolase PF553_06995 IPR036185 DNA helicase, DnaB-like, N-terminal domain superfamily PF553_06995 IPR003593 AAA+ ATPase domain PF553_06995 IPR007694 DNA helicase, DnaB-like, C-terminal PF553_07000 IPR020069 Ribosomal protein L9, C-terminal PF553_07000 IPR020594 Ribosomal protein L9, bacteria/chloroplast PF553_07000 IPR009027 Ribosomal protein L9/RNase H1, N-terminal PF553_07000 IPR000244 Ribosomal protein L9 PF553_07000 IPR036791 Ribosomal protein L9, C-terminal domain superfamily PF553_07000 IPR020070 Ribosomal protein L9, N-terminal PF553_07000 IPR036935 Ribosomal protein L9, N-terminal domain superfamily PF553_07005 IPR001648 Ribosomal protein S18 PF553_07005 IPR018275 Ribosomal protein S18, conserved site PF553_07005 IPR036870 Ribosomal protein S18 superfamily PF553_07010 IPR035980 Ribosomal protein S6 superfamily PF553_07010 IPR020814 Ribosomal protein S6, plastid/chloroplast PF553_07010 IPR000529 Ribosomal protein S6 PF553_07010 IPR014717 Translation elongation factor EF1B/ribosomal protein S6 PF553_07010 IPR020815 Ribosomal protein S6, conserved site PF553_07015 IPR006369 Protohaem IX farnesyltransferase PF553_07015 IPR000537 UbiA prenyltransferase family PF553_07015 IPR030470 UbiA prenyltransferase conserved site PF553_07020 IPR005171 Cytochrome C oxidase subunit IV, prokaryotes PF553_07020 IPR014210 Cytochrome o ubiquinol oxidase subunit IV PF553_07025 IPR014206 Cytochrome o ubiquinol oxidase, subunit III PF553_07025 IPR033946 Ubiquinol oxidase subunit III domain PF553_07025 IPR035973 Cytochrome c oxidase subunit III-like superfamily PF553_07025 IPR000298 Cytochrome c oxidase subunit III-like PF553_07025 IPR024791 Cytochrome c oxidase subunit III PF553_07025 IPR013833 Cytochrome c oxidase, subunit III, 4-helical bundle PF553_07030 IPR014207 Cytochrome o ubiquinol oxidase, subunit I PF553_07030 IPR023615 Cytochrome c oxidase, subunit I, copper-binding site PF553_07030 IPR000883 Cytochrome c oxidase subunit I PF553_07030 IPR036927 Cytochrome c oxidase-like, subunit I superfamily PF553_07030 IPR023616 Cytochrome c oxidase-like, subunit I domain PF553_07035 IPR002429 Cytochrome c oxidase subunit II-like C-terminal PF553_07035 IPR010514 COX aromatic rich motif PF553_07035 IPR008972 Cupredoxin PF553_07035 IPR034227 Ubiquinol oxidase subunit 2, cupredoxin domain PF553_07035 IPR011759 Cytochrome C oxidase subunit II, transmembrane domain PF553_07035 IPR036257 Cytochrome C oxidase subunit II, transmembrane domain superfamily PF553_07035 IPR006333 Cytochrome o ubiquinol oxidase subunit II PF553_07045 IPR040442 Pyruvate kinase-like domain superfamily PF553_07045 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain superfamily PF553_07045 IPR002192 Pyruvate phosphate dikinase, PEP/pyruvate-binding PF553_07045 IPR023151 PEP-utilising enzyme, conserved site PF553_07045 IPR036637 Phosphohistidine domain superfamily PF553_07045 IPR006319 Phosphoenolpyruvate synthase PF553_07045 IPR008279 PEP-utilising enzyme, mobile domain PF553_07045 IPR013815 ATP-grasp fold, subdomain 1 PF553_07045 IPR000121 PEP-utilising enzyme, C-terminal PF553_07045 IPR018274 PEP-utilising enzyme, active site PF553_07050 IPR005177 Bifunctional kinase-pyrophosphorylase PF553_07050 IPR026530 Phosphoenolpyruvate synthase regulatory protein PF553_07060 IPR011330 Glycoside hydrolase/deacetylase, beta/alpha-barrel PF553_07060 IPR002509 NodB homology domain PF553_07060 IPR023854 Poly-beta-1,6-N-acetyl-D-glucosamine N-deacetylase PgaB PF553_07060 IPR032772 Poly-beta-1,6-N-acetyl-D-glucosamine N-deacetylase PgaB, C-terminal PF553_07065 IPR023853 Poly-beta-1,6 N-acetyl-D-glucosamine synthase PgaC/IcaA PF553_07065 IPR029044 Nucleotide-diphospho-sugar transferases PF553_07065 IPR001173 Glycosyltransferase 2-like PF553_07070 IPR023829 Poly-beta-1,6-N-acetyl-D-glucosamine biosynthesis protein PgaD PF553_07080 IPR036661 Luciferase-like domain superfamily PF553_07080 IPR011251 Luciferase-like domain PF553_07080 IPR019949 Luciferase family oxidoreductase, group 1 PF553_07095 IPR036388 Winged helix-like DNA-binding domain superfamily PF553_07095 IPR005119 LysR, substrate-binding PF553_07095 IPR000847 Transcription regulator HTH, LysR PF553_07095 IPR036390 Winged helix DNA-binding domain superfamily PF553_07105 IPR004373 Peptide chain release factor 1 PF553_07105 IPR005139 Peptide chain release factor PF553_07105 IPR000352 Peptide chain release factor class I PF553_07110 IPR002052 DNA methylase, N-6 adenine-specific, conserved site PF553_07110 IPR004556 Methyltransferase HemK-like PF553_07110 IPR025714 Methyltransferase domain PF553_07110 IPR040758 Release factor glutamine methyltransferase, N-terminal domain PF553_07110 IPR019874 Protein-(glutamine-N5) methyltransferase, release factor-specific PF553_07110 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase PF553_07115 IPR018060 DNA binding HTH domain, AraC-type PF553_07115 IPR018062 HTH domain AraC-type, conserved site PF553_07115 IPR009057 Homeobox-like domain superfamily PF553_07115 IPR020449 Transcription regulator HTH, AraC- type PF553_07120 IPR020904 Short-chain dehydrogenase/reductase, conserved site PF553_07120 IPR002347 Short-chain dehydrogenase/reductase SDR PF553_07120 IPR036291 NAD(P)-binding domain superfamily PF553_07125 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal PF553_07125 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal PF553_07125 IPR036250 Acyl-CoA dehydrogenase-like, C-terminal PF553_07125 IPR006091 Acyl-CoA oxidase/dehydrogenase, central domain PF553_07125 IPR006089 Acyl-CoA dehydrogenase, conserved site PF553_07125 IPR037069 Acyl-CoA dehydrogenase/oxidase, N-terminal domain superfamily PF553_07125 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily PF553_07130 IPR020845 AMP-binding, conserved site PF553_07130 IPR000873 AMP-dependent synthetase/ligase PF553_07130 IPR042099 AMP-dependent synthetase-like superfamily PF553_07130 IPR025110 AMP-binding enzyme, C-terminal domain PF553_07135 IPR002563 Flavin reductase like domain PF553_07135 IPR012349 FMN-binding split barrel PF553_07140 IPR035985 Ubiquitin-activating enzyme PF553_07140 IPR000594 THIF-type NAD/FAD binding fold PF553_07140 IPR012730 Molybdopterin synthase sulfurylase MoeB PF553_07145 IPR000719 Protein kinase domain PF553_07145 IPR004147 UbiB domain PF553_07145 IPR011009 Protein kinase-like domain superfamily PF553_07150 IPR006156 Dihydroneopterin aldolase PF553_07150 IPR006157 Dihydroneopterin aldolase/epimerase domain PF553_07160 IPR023298 P-type ATPase, transmembrane domain superfamily PF553_07160 IPR004623 Potassium-transporting ATPase A chain PF553_07165 IPR023299 P-type ATPase, cytoplasmic domain N PF553_07165 IPR018303 P-type ATPase, phosphorylation site PF553_07165 IPR001757 P-type ATPase PF553_07165 IPR006391 P-type ATPase, B chain, subfamily IA PF553_07165 IPR008250 P-type ATPase, A domain superfamily PF553_07165 IPR023298 P-type ATPase, transmembrane domain superfamily PF553_07165 IPR036412 HAD-like superfamily PF553_07170 IPR003820 Potassium-transporting ATPase C chain PF553_07175 IPR003852 Signal transduction histidine kinase, osmosensitive K+ channel sensor, N-terminal PF553_07175 IPR004358 Signal transduction histidine kinase-related protein, C-terminal PF553_07175 IPR027417 P-loop containing nucleoside triphosphate hydrolase PF553_07175 IPR025201 Sensor protein KdpD, transmembrane domain PF553_07175 IPR038318 KdpD, transmembrane domain superfamily PF553_07175 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain PF553_07175 IPR036890 Histidine kinase/HSP90-like ATPase superfamily PF553_07175 IPR003594 Histidine kinase/HSP90-like ATPase PF553_07175 IPR029016 GAF-like domain superfamily PF553_07175 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily PF553_07175 IPR005467 Histidine kinase domain PF553_07180 IPR036388 Winged helix-like DNA-binding domain superfamily PF553_07180 IPR011006 CheY-like superfamily PF553_07180 IPR001867 OmpR/PhoB-type DNA-binding domain PF553_07180 IPR039420 Transcriptional regulatory protein WalR-like PF553_07180 IPR001789 Signal transduction response regulator, receiver domain PF553_07185 IPR036651 Glutamine synthetase, N-terminal domain superfamily PF553_07185 IPR014746 Glutamine synthetase/guanido kinase, catalytic domain PF553_07185 IPR008146 Glutamine synthetase, catalytic domain PF553_07185 IPR027303 Glutamine synthetase, glycine-rich site PF553_07195 IPR009078 Ferritin-like superfamily PF553_07195 IPR011566 Ubiquinone biosynthesis protein Coq7 PF553_07200 IPR011701 Major facilitator superfamily PF553_07200 IPR036259 MFS transporter superfamily PF553_07200 IPR023727 Lysophospholipid transporter LplT PF553_07205 IPR000184 Bacterial surface antigen (D15) PF553_07205 IPR010827 POTRA domain, BamA/TamA-like PF553_07205 IPR039910 Surface antigen D15-like PF553_07205 IPR034746 POTRA domain PF553_07205 IPR035243 TamA, POTRA domain 1 PF553_07220 IPR004406 Aconitase B PF553_07220 IPR015932 Aconitase, domain 2 PF553_07220 IPR015929 Aconitase B, swivel PF553_07220 IPR036288 Aconitase B, HEAT-like domain superfamily PF553_07220 IPR036008 Aconitase, iron-sulfur domain PF553_07220 IPR015933 Aconitase B, HEAT-like domain PF553_07220 IPR015928 Aconitase/3-isopropylmalate dehydratase, swivel PF553_07220 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain PF553_07220 IPR015931 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha, subdomain 1/3 PF553_07220 IPR018136 Aconitase family, 4Fe-4S cluster binding site PF553_07230 IPR028325 Voltage-gated potassium channel PF553_07230 IPR000595 Cyclic nucleotide-binding domain PF553_07230 IPR018490 Cyclic nucleotide-binding-like PF553_07230 IPR018488 Cyclic nucleotide-binding, conserved site PF553_07230 IPR005821 Ion transport domain PF553_07230 IPR014710 RmlC-like jelly roll fold PF553_07235 IPR011701 Major facilitator superfamily PF553_07235 IPR020846 Major facilitator superfamily domain PF553_07235 IPR036259 MFS transporter superfamily PF553_07250 IPR037406 HTH-type transcriptional regulator MetR, PBP2 domain PF553_07250 IPR036390 Winged helix DNA-binding domain superfamily PF553_07250 IPR036388 Winged helix-like DNA-binding domain superfamily PF553_07250 IPR000847 Transcription regulator HTH, LysR PF553_07250 IPR005119 LysR, substrate-binding PF553_07255 IPR007382 Uncharacterised protein family UPF0756, transmembrame PF553_07265 IPR042092 Pseudouridine synthase, RsuA/RluB/E/F, catalytic domain PF553_07265 IPR000748 Pseudouridine synthase, RsuA/RluB/E/F PF553_07265 IPR020103 Pseudouridine synthase, catalytic domain superfamily PF553_07265 IPR006145 Pseudouridine synthase, RsuA/RluA PF553_07265 IPR018496 Pseudouridine synthase, RsuA/RluB/E/F, conserved site PF553_07265 IPR036986 RNA-binding S4 domain superfamily PF553_07265 IPR002942 RNA-binding S4 domain PF553_07280 IPR006224 Pseudouridine synthase, RluC/RluD, conserved site PF553_07280 IPR006225 Pseudouridine synthase, RluC/RluD PF553_07280 IPR020103 Pseudouridine synthase, catalytic domain superfamily PF553_07280 IPR036986 RNA-binding S4 domain superfamily PF553_07280 IPR002942 RNA-binding S4 domain PF553_07280 IPR006145 Pseudouridine synthase, RsuA/RluA PF553_07285 IPR027417 P-loop containing nucleoside triphosphate hydrolase PF553_07285 IPR003442 tRNA threonylcarbamoyl adenosine modification protein TsaE PF553_07290 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup PF553_07290 IPR042120 MutL, C-terminal domain, dimerisation subdomain PF553_07290 IPR014762 DNA mismatch repair, conserved site PF553_07290 IPR020667 DNA mismatch repair protein, MutL PF553_07290 IPR002099 DNA mismatch repair protein family, N-terminal PF553_07290 IPR013507 DNA mismatch repair protein, S5 domain 2-like PF553_07290 IPR036890 Histidine kinase/HSP90-like ATPase superfamily PF553_07290 IPR038973 DNA mismatch repair protein MutL/Mlh/Pms PF553_07290 IPR014790 MutL, C-terminal, dimerisation PF553_07290 IPR037198 MutL, C-terminal domain superfamily PF553_07290 IPR042121 MutL, C-terminal domain, regulatory subdomain PF553_07290 IPR020568 Ribosomal protein S5 domain 2-type fold PF553_07295 IPR039657 Dimethylallyltransferase PF553_07295 IPR018022 IPP transferase PF553_07295 IPR027417 P-loop containing nucleoside triphosphate hydrolase PF553_07300 IPR005001 RNA-binding protein Hfq PF553_07300 IPR010920 LSM domain superfamily PF553_07310 IPR033878 Nitroreductase NfsB-like PF553_07310 IPR029479 Nitroreductase PF553_07310 IPR000415 Nitroreductase-like PF553_07320 IPR010138 UDP-2,3-diacylglucosamine hydrolase PF553_07320 IPR004843 Calcineurin-like phosphoesterase domain, ApaH type PF553_07325 IPR002130 Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain PF553_07325 IPR020892 Cyclophilin-type peptidyl-prolyl cis-trans isomerase, conserved site PF553_07325 IPR024936 Cyclophilin-type peptidyl-prolyl cis-trans isomerase PF553_07325 IPR029000 Cyclophilin-like domain superfamily PF553_07330 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold PF553_07330 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site PF553_07330 IPR004514 Glutamine-tRNA synthetase PF553_07330 IPR020058 Glutamyl/glutaminyl-tRNA synthetase, class Ib, catalytic domain PF553_07330 IPR022861 Glutamine-tRNA ligase, bacterial PF553_07330 IPR020059 Glutamyl/glutaminyl-tRNA synthetase, class Ib, anti-codon binding domain PF553_07330 IPR020061 Glutamine-tRNA ligase, alpha-bundle domain superfamily PF553_07330 IPR020056 Ribosomal protein L25/Gln-tRNA synthetase, N-terminal PF553_07330 IPR011035 Ribosomal protein L25/Gln-tRNA synthetase, anti-codon-binding domain superfamily PF553_07330 IPR000924 Glutamyl/glutaminyl-tRNA synthetase PF553_07335 IPR001674 GMP synthase, C-terminal PF553_07335 IPR017926 Glutamine amidotransferase PF553_07335 IPR029062 Class I glutamine amidotransferase-like PF553_07335 IPR004739 GMP synthase, glutamine amidotransferase PF553_07335 IPR022955 GMP synthase PF553_07335 IPR025777 GMP synthetase ATP pyrophosphatase domain PF553_07335 IPR022310 NAD/GMP synthase PF553_07335 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold PF553_07340 IPR009246 Ethanolamine ammonia-lyase light chain PF553_07340 IPR042251 Ethanolamine ammonia-lyase light chain, C-terminal PF553_07340 IPR042255 Ethanolamine ammonia-lyase light chain, N-terminal PF553_07345 IPR013785 Aldolase-type TIM barrel PF553_07345 IPR010628 Ethanolamine ammonia lyase large subunit PF553_07350 IPR002293 Amino acid/polyamine transporter I PF553_07355 IPR016162 Aldehyde dehydrogenase, N-terminal PF553_07355 IPR016161 Aldehyde/histidinol dehydrogenase PF553_07355 IPR016163 Aldehyde dehydrogenase, C-terminal PF553_07355 IPR016160 Aldehyde dehydrogenase, cysteine active site PF553_07355 IPR015590 Aldehyde dehydrogenase domain PF553_07355 IPR029510 Aldehyde dehydrogenase, glutamic acid active site PF553_07360 IPR029016 GAF-like domain superfamily PF553_07370 IPR039697 Iron-type alcohol dehydrogenase-like PF553_07370 IPR018211 Alcohol dehydrogenase, iron-type, conserved site PF553_07370 IPR001670 Alcohol dehydrogenase, iron-type/glycerol dehydrogenase GldA PF553_07375 IPR010285 DNA helicase Pif1-like PF553_07375 IPR027417 P-loop containing nucleoside triphosphate hydrolase PF553_07375 IPR029491 Helicase Helix-turn-helix domain PF553_07375 IPR003593 AAA+ ATPase domain PF553_07385 IPR010499 Bacterial transcription activator, effector binding PF553_07385 IPR029442 GyrI-like small molecule binding domain PF553_07385 IPR011256 Regulatory factor, effector binding domain superfamily PF553_07390 IPR000417 Hydroxyethylthiazole kinase PF553_07390 IPR029056 Ribokinase-like PF553_07405 IPR035414 Peptidase M1, alanyl aminopeptidase, Ig-like fold PF553_07405 IPR027268 Peptidase M4/M1, CTD superfamily PF553_07405 IPR037144 Peptidase M1, alanyl aminopeptidase, C-terminal domain superfamily PF553_07405 IPR024601 Peptidase M1, alanyl aminopeptidase, C-terminal PF553_07405 IPR012779 Peptidase M1, alanyl aminopeptidase PF553_07405 IPR001930 Peptidase M1, alanine aminopeptidase/leukotriene A4 hydrolase PF553_07405 IPR038438 Alanyl aminopeptidase, Ig-like domain superfamily PF553_07405 IPR042097 Aminopeptidase N-like , N-terminal PF553_07405 IPR014782 Peptidase M1, membrane alanine aminopeptidase PF553_07420 IPR025885 PapC, N-terminal domain PF553_07420 IPR037224 PapC, N-terminal domain superfamily PF553_07420 IPR042186 Outer membrane usher protein FimD, plug domain PF553_07420 IPR025949 PapC-like, C-terminal domain PF553_07420 IPR000015 Outer membrane usher protein PF553_07420 IPR018030 Fimbrial membrane usher, conserved site PF553_07445 IPR036263 Chorismate mutase type II superfamily PF553_07445 IPR008240 Chorismate mutase, periplasmic PF553_07445 IPR002701 Chorismate mutase II, prokaryotic-type PF553_07450 IPR036390 Winged helix DNA-binding domain superfamily PF553_07450 IPR019885 Transcription regulator HTH, AsnC-type, conserved site PF553_07450 IPR036388 Winged helix-like DNA-binding domain superfamily PF553_07450 IPR019887 Transcription regulator AsnC/Lrp, ligand binding domain PF553_07450 IPR011008 Dimeric alpha-beta barrel PF553_07450 IPR000485 AsnC-type HTH domain PF553_07450 IPR011991 ArsR-like helix-turn-helix domain PF553_07450 IPR019888 Transcription regulator AsnC-type PF553_07460 IPR009057 Homeobox-like domain superfamily PF553_07460 IPR001647 DNA-binding HTH domain, TetR-type PF553_07465 IPR010105 TonB-dependent siderophore receptor PF553_07465 IPR000531 TonB-dependent receptor-like, beta-barrel PF553_07465 IPR036942 TonB-dependent receptor-like, beta-barrel domain superfamily PF553_07465 IPR037066 TonB-dependent receptor, plug domain superfamily PF553_07465 IPR039426 Vitamin B12 transporter BtuB-like PF553_07465 IPR012910 TonB-dependent receptor, plug domain PF553_07470 IPR010920 LSM domain superfamily PF553_07470 IPR006685 Mechanosensitive ion channel MscS PF553_07470 IPR011066 Mechanosensitive ion channel MscS, C-terminal PF553_07470 IPR030192 Miniconductance mechanosensitive channel YbdG PF553_07500 IPR010917 TonB-dependent receptor, conserved site PF553_07500 IPR012910 TonB-dependent receptor, plug domain PF553_07500 IPR037066 TonB-dependent receptor, plug domain superfamily PF553_07500 IPR039423 TonB-dependent receptor-like PF553_07500 IPR000531 TonB-dependent receptor-like, beta-barrel PF553_07500 IPR010916 TonB box, conserved site PF553_07500 IPR036942 TonB-dependent receptor-like, beta-barrel domain superfamily PF553_07500 IPR010105 TonB-dependent siderophore receptor PF553_07520 IPR017871 ABC transporter, conserved site PF553_07520 IPR027417 P-loop containing nucleoside triphosphate hydrolase PF553_07520 IPR032781 ABC-transporter extension domain PF553_07520 IPR003439 ABC transporter-like PF553_07520 IPR003593 AAA+ ATPase domain PF553_07525 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold PF553_07525 IPR006015 Universal stress protein A family PF553_07525 IPR006016 UspA PF553_07550 IPR001757 P-type ATPase PF553_07550 IPR006415 P-type ATPase, subfamily IIIB PF553_07550 IPR036412 HAD-like superfamily PF553_07550 IPR006068 Cation-transporting P-type ATPase, C-terminal PF553_07550 IPR004014 Cation-transporting P-type ATPase, N-terminal PF553_07550 IPR023299 P-type ATPase, cytoplasmic domain N PF553_07550 IPR018303 P-type ATPase, phosphorylation site PF553_07550 IPR023298 P-type ATPase, transmembrane domain superfamily PF553_07550 IPR008250 P-type ATPase, A domain superfamily PF553_07550 IPR023214 HAD superfamily PF553_07555 IPR003416 MgtC/SapB/SrpB/YhiD family PF553_07560 IPR004711 Benzoate transporter PF553_07565 IPR019885 Transcription regulator HTH, AsnC-type, conserved site PF553_07565 IPR011991 ArsR-like helix-turn-helix domain PF553_07565 IPR000485 AsnC-type HTH domain PF553_07565 IPR011008 Dimeric alpha-beta barrel PF553_07565 IPR019888 Transcription regulator AsnC-type PF553_07565 IPR019887 Transcription regulator AsnC/Lrp, ligand binding domain PF553_07565 IPR036390 Winged helix DNA-binding domain superfamily PF553_07565 IPR036388 Winged helix-like DNA-binding domain superfamily PF553_07575 IPR009057 Homeobox-like domain superfamily PF553_07585 IPR024474 Zinc-finger binding domain of transposase IS66 PF553_07585 IPR004291 Transposase, IS66 PF553_07585 IPR039552 Transposase IS66, C-terminal PF553_07585 IPR024463 Transposase TnpC, homeodomain PF553_07595 IPR013785 Aldolase-type TIM barrel PF553_07595 IPR001585 Transaldolase/Fructose-6-phosphate aldolase PF553_07595 IPR004730 Transaldolase type 1 PF553_07595 IPR018225 Transaldolase, active site PF553_07600 IPR036390 Winged helix DNA-binding domain superfamily PF553_07600 IPR036388 Winged helix-like DNA-binding domain superfamily PF553_07600 IPR005119 LysR, substrate-binding PF553_07600 IPR000847 Transcription regulator HTH, LysR PF553_07610 IPR012806 Acetyl-CoA C-acyltransferase FadI PF553_07610 IPR016039 Thiolase-like PF553_07610 IPR020610 Thiolase, active site PF553_07610 IPR020617 Thiolase, C-terminal PF553_07610 IPR020613 Thiolase, conserved site PF553_07610 IPR020616 Thiolase, N-terminal PF553_07610 IPR002155 Thiolase PF553_07615 IPR011284 3-oxoacyl-(acyl-carrier-protein) reductase PF553_07615 IPR036291 NAD(P)-binding domain superfamily PF553_07615 IPR020904 Short-chain dehydrogenase/reductase, conserved site PF553_07615 IPR002347 Short-chain dehydrogenase/reductase SDR PF553_07620 IPR003965 Fatty acid synthase PF553_07620 IPR029069 HotDog domain superfamily PF553_07620 IPR002539 MaoC-like dehydratase domain PF553_07625 IPR001466 Beta-lactamase-related PF553_07625 IPR012338 Beta-lactamase/transpeptidase-like PF553_07635 IPR020846 Major facilitator superfamily domain PF553_07635 IPR011701 Major facilitator superfamily PF553_07635 IPR036259 MFS transporter superfamily PF553_07640 IPR038249 DNA polymerase III, tau subunit, C-terminal domain superfamily PF553_07640 IPR027417 P-loop containing nucleoside triphosphate hydrolase PF553_07640 IPR021029 DNA polymerase III, tau subunit, domain V PF553_07640 IPR022754 DNA polymerase III, gamma subunit, domain III PF553_07640 IPR022001 DNA polymerase III subunit tau, DnaB-binding domain IV PF553_07640 IPR008921 DNA polymerase III, clamp loader complex, gamma/delta/delta subunit, C-terminal PF553_07640 IPR012763 DNA polymerase III, subunit gamma/ tau PF553_07640 IPR001270 ClpA/B family PF553_07640 IPR003593 AAA+ ATPase domain PF553_07650 IPR017850 Alkaline-phosphatase-like, core domain superfamily PF553_07650 IPR017767 Bacterial phospholipase C, phosphocholine-specific PF553_07650 IPR007312 Phosphoesterase PF553_07650 IPR008475 Bacterial phospholipase C, C-terminal domain PF553_07650 IPR006311 Twin-arginine translocation pathway, signal sequence PF553_07655 IPR006683 Thioesterase domain PF553_07655 IPR029069 HotDog domain superfamily PF553_07660 IPR018211 Alcohol dehydrogenase, iron-type, conserved site PF553_07660 IPR039697 Iron-type alcohol dehydrogenase-like PF553_07660 IPR001670 Alcohol dehydrogenase, iron-type/glycerol dehydrogenase GldA PF553_07670 IPR036196 Phosphotyrosine protein phosphatase I superfamily PF553_07670 IPR017867 Protein-tyrosine phosphatase, low molecular weight PF553_07670 IPR023485 Phosphotyrosine protein phosphatase I PF553_07675 IPR011601 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal PF553_07675 IPR003170 UDP-N-acetylenolpyruvoylglucosamine reductase PF553_07675 IPR016169 FAD-binding, type PCMH, subdomain 2 PF553_07675 IPR016167 FAD-binding, type PCMH, subdomain 1 PF553_07675 IPR036318 FAD-binding, type PCMH-like superfamily PF553_07675 IPR016166 FAD-binding domain, PCMH-type PF553_07675 IPR006094 FAD linked oxidase, N-terminal PF553_07675 IPR036635 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain superfamily PF553_07690 IPR024188 Glutamate synthase large subunit-like protein PF553_07690 IPR002932 Glutamate synthase domain PF553_07690 IPR027283 Glutamate synthase large subunit-like protein, bacteria PF553_07690 IPR013785 Aldolase-type TIM barrel PF553_07710 IPR026032 Probable 3-phenylpropionic acid transporter PF553_07710 IPR024989 Major facilitator superfamily associated domain PF553_07710 IPR036259 MFS transporter superfamily PF553_07720 IPR005482 Biotin carboxylase, C-terminal PF553_07720 IPR016185 Pre-ATP-grasp domain superfamily PF553_07720 IPR004549 Acetyl-CoA carboxylase, biotin carboxylase PF553_07720 IPR011761 ATP-grasp fold PF553_07720 IPR013815 ATP-grasp fold, subdomain 1 PF553_07720 IPR005481 Biotin carboxylase-like, N-terminal domain PF553_07720 IPR011764 Biotin carboxylation domain PF553_07720 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain PF553_07720 IPR011054 Rudiment single hybrid motif PF553_07725 IPR011053 Single hybrid motif PF553_07725 IPR000089 Biotin/lipoyl attachment PF553_07725 IPR001882 Biotin-binding site PF553_07725 IPR001249 Acetyl-CoA biotin carboxyl carrier PF553_07730 IPR036441 Dehydroquinase, class II superfamily PF553_07730 IPR018509 Dehydroquinase, class II, conserved site PF553_07730 IPR001874 Dehydroquinase, class II PF553_07735 IPR025188 Domain of unknown function DUF4113 PF553_07735 IPR036775 DNA polymerase, Y-family, little finger domain superfamily PF553_07735 IPR001126 UmuC domain PF553_07735 IPR017961 DNA polymerase, Y-family, little finger domain PF553_07740 IPR005890 Nitrate transport ATP-binding subunit C/D PF553_07740 IPR003593 AAA+ ATPase domain PF553_07740 IPR027417 P-loop containing nucleoside triphosphate hydrolase PF553_07740 IPR017871 ABC transporter, conserved site PF553_07740 IPR003439 ABC transporter-like PF553_07745 IPR016032 Signal transduction response regulator, C-terminal effector PF553_07745 IPR001867 OmpR/PhoB-type DNA-binding domain PF553_07745 IPR036388 Winged helix-like DNA-binding domain superfamily PF553_07745 IPR011006 CheY-like superfamily PF553_07745 IPR001789 Signal transduction response regulator, receiver domain PF553_07745 IPR039420 Transcriptional regulatory protein WalR-like PF553_07755 IPR036136 Nitrite/Sulfite reductase ferredoxin-like domain superfamily PF553_07755 IPR005117 Nitrite/Sulfite reductase ferredoxin-like domain PF553_07755 IPR023753 FAD/NAD(P)-binding domain PF553_07755 IPR036188 FAD/NAD(P)-binding domain superfamily PF553_07755 IPR041854 BFD-like [2Fe-2S]-binding domain superfamily PF553_07755 IPR007419 BFD-like [2Fe-2S]-binding domain PF553_07755 IPR012748 Rieske-like [2Fe-2S] domain, NirD-type PF553_07755 IPR006067 Nitrite/sulphite reductase 4Fe-4S domain PF553_07755 IPR006066 Nitrite/sulphite reductase iron-sulphur/sirohaem-binding site PF553_07755 IPR036922 Rieske [2Fe-2S] iron-sulphur domain superfamily PF553_07755 IPR041575 NADH-rubredoxin oxidoreductase, C-terminal PF553_07755 IPR012744 Nitrite reductase [NAD(P)H] large subunit, NirB PF553_07760 IPR007419 BFD-like [2Fe-2S]-binding domain PF553_07760 IPR041854 BFD-like [2Fe-2S]-binding domain superfamily PF553_07760 IPR036188 FAD/NAD(P)-binding domain superfamily PF553_07760 IPR006066 Nitrite/sulphite reductase iron-sulphur/sirohaem-binding site PF553_07760 IPR041575 NADH-rubredoxin oxidoreductase, C-terminal PF553_07760 IPR023753 FAD/NAD(P)-binding domain PF553_07760 IPR016156 FAD/NAD-linked reductase, dimerisation domain superfamily PF553_07760 IPR006067 Nitrite/sulphite reductase 4Fe-4S domain PF553_07760 IPR036136 Nitrite/Sulfite reductase ferredoxin-like domain superfamily PF553_07760 IPR005117 Nitrite/Sulfite reductase ferredoxin-like domain PF553_07760 IPR017121 Nitrite reductase [NAD(P)H], large subunit PF553_07760 IPR012744 Nitrite reductase [NAD(P)H] large subunit, NirB PF553_07765 IPR009010 Aspartate decarboxylase-like domain superfamily PF553_07765 IPR027467 Molybdopterin oxidoreductase, molybdopterin cofactor binding site PF553_07765 IPR006963 Molybdopterin oxidoreductase, 4Fe-4S domain PF553_07765 IPR007419 BFD-like [2Fe-2S]-binding domain PF553_07765 IPR041854 BFD-like [2Fe-2S]-binding domain superfamily PF553_07765 IPR041957 Nitrate reductase NapA-like, molybdopterin-binding domain PF553_07765 IPR006657 Molybdopterin dinucleotide-binding domain PF553_07765 IPR006656 Molybdopterin oxidoreductase PF553_07770 IPR029044 Nucleotide-diphospho-sugar transferases PF553_07770 IPR013482 Molybdenum cofactor guanylyltransferase PF553_07770 IPR025877 MobA-like NTP transferase PF553_07775 IPR041957 Nitrate reductase NapA-like, molybdopterin-binding domain PF553_07775 IPR009010 Aspartate decarboxylase-like domain superfamily PF553_07775 IPR027467 Molybdopterin oxidoreductase, molybdopterin cofactor binding site PF553_07775 IPR006963 Molybdopterin oxidoreductase, 4Fe-4S domain PF553_07775 IPR006656 Molybdopterin oxidoreductase PF553_07775 IPR006657 Molybdopterin dinucleotide-binding domain PF553_07780 IPR013785 Aldolase-type TIM barrel PF553_07780 IPR006638 Elp3/MiaB/NifB PF553_07780 IPR007197 Radical SAM PF553_07780 IPR013483 Molybdenum cofactor biosynthesis protein A PF553_07780 IPR000385 MoaA/nifB/pqqE, iron-sulphur binding, conserved site PF553_07780 IPR010505 Molybdenum cofactor synthesis C-terminal PF553_07790 IPR036563 Molybdopterin biosynthesis MoaE subunit superfamily PF553_07790 IPR003448 Molybdopterin biosynthesis MoaE PF553_07795 IPR036425 MoaB/Mog-like domain superfamily PF553_07795 IPR001453 MoaB/Mog domain PF553_07795 IPR012247 Bifunctional molybdenum cofactor biosynthesis protein MoaC/MogA PF553_07795 IPR036522 Molybdopterin cofactor biosynthesis C (MoaC) domain superfamily PF553_07795 IPR002820 Molybdopterin cofactor biosynthesis C (MoaC) domain PF553_07795 IPR023045 Molybdenum cofactor biosynthesis C PF553_07800 IPR036135 MoeA, N-terminal and linker domain superfamily PF553_07800 IPR036425 MoaB/Mog-like domain superfamily PF553_07800 IPR001453 MoaB/Mog domain PF553_07800 IPR008284 Molybdenum cofactor biosynthesis, conserved site PF553_07800 IPR038987 Molybdopterin biosynthesis protein MoeA-like PF553_07800 IPR005111 MoeA, C-terminal, domain IV PF553_07800 IPR036688 MoeA, C-terminal, domain IV superfamily PF553_07800 IPR005110 MoeA, N-terminal and linker domain PF553_07805 IPR011991 ArsR-like helix-turn-helix domain PF553_07805 IPR036388 Winged helix-like DNA-binding domain superfamily PF553_07805 IPR002577 Helix-turn-helix, HxlR type PF553_07805 IPR036390 Winged helix DNA-binding domain superfamily PF553_07810 IPR036390 Winged helix DNA-binding domain superfamily PF553_07810 IPR036388 Winged helix-like DNA-binding domain superfamily PF553_07810 IPR000524 Transcription regulator HTH, GntR PF553_07810 IPR015421 Pyridoxal phosphate-dependent transferase, major domain PF553_07810 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 PF553_07810 IPR015424 Pyridoxal phosphate-dependent transferase PF553_07810 IPR004839 Aminotransferase, class I/classII PF553_07815 IPR000620 EamA domain PF553_07835 IPR027396 DsrEFH-like PF553_07835 IPR003787 Sulphur relay, DsrE/F-like protein PF553_07835 IPR017463 Sulphur relay, TusD/DsrE PF553_07840 IPR016040 NAD(P)-binding domain PF553_07840 IPR005886 UDP-glucose 4-epimerase PF553_07840 IPR036291 NAD(P)-binding domain superfamily PF553_07845 IPR022761 Fumarate lyase, N-terminal PF553_07845 IPR000362 Fumarate lyase family PF553_07845 IPR020557 Fumarate lyase, conserved site PF553_07845 IPR018951 Fumarase C, C-terminal PF553_07845 IPR024083 Fumarase/histidase, N-terminal PF553_07845 IPR005677 Fumarate hydratase, class II PF553_07845 IPR008948 L-Aspartase-like PF553_07870 IPR023080 D-amino acid dehydrogenase DadA PF553_07870 IPR006076 FAD dependent oxidoreductase PF553_07870 IPR036188 FAD/NAD(P)-binding domain superfamily PF553_07880 IPR036571 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase superfamily PF553_07880 IPR003526 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase PF553_07880 IPR020555 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, conserved site PF553_07890 IPR036901 Aspartate/ornithine carbamoyltransferase superfamily PF553_07890 IPR002292 Ornithine/putrescine carbamoyltransferase PF553_07890 IPR024904 Ornithine carbamoyltransferase PF553_07890 IPR006130 Aspartate/ornithine carbamoyltransferase PF553_07890 IPR006131 Aspartate/ornithine carbamoyltransferase, Asp/Orn-binding domain PF553_07890 IPR006132 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding PF553_07910 IPR001789 Signal transduction response regulator, receiver domain PF553_07910 IPR025662 Sigma-54 interaction domain, ATP-binding site 1 PF553_07910 IPR025944 Sigma-54 interaction domain, conserved site PF553_07910 IPR010114 DNA-binding transcriptional regulator NtrC PF553_07910 IPR002078 RNA polymerase sigma factor 54 interaction domain PF553_07910 IPR027417 P-loop containing nucleoside triphosphate hydrolase PF553_07910 IPR003593 AAA+ ATPase domain PF553_07910 IPR011006 CheY-like superfamily PF553_07910 IPR009057 Homeobox-like domain superfamily PF553_07910 IPR002197 DNA binding HTH domain, Fis-type PF553_07910 IPR025943 Sigma-54 interaction domain, ATP-binding site 2 PF553_07915 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain PF553_07915 IPR004358 Signal transduction histidine kinase-related protein, C-terminal PF553_07915 IPR013767 PAS fold PF553_07915 IPR003594 Histidine kinase/HSP90-like ATPase PF553_07915 IPR036890 Histidine kinase/HSP90-like ATPase superfamily PF553_07915 IPR005467 Histidine kinase domain PF553_07915 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily PF553_07915 IPR035965 PAS domain superfamily PF553_07915 IPR000014 PAS domain PF553_07925 IPR023404 Radical SAM, alpha/beta horseshoe PF553_07925 IPR007197 Radical SAM PF553_07925 IPR041582 RimO, TRAM domain PF553_07925 IPR006638 Elp3/MiaB/NifB PF553_07925 IPR005840 Ribosomal protein S12 methylthiotransferase RimO PF553_07925 IPR005839 Methylthiotransferase PF553_07925 IPR002792 TRAM domain PF553_07925 IPR038135 Methylthiotransferase, N-terminal domain superfamily PF553_07925 IPR013848 Methylthiotransferase, N-terminal PF553_07925 IPR020612 Methylthiotransferase, conserved site PF553_07930 IPR015963 Uridylate kinase, bacteria PF553_07930 IPR011817 Uridylate kinase PF553_07930 IPR001048 Aspartate/glutamate/uridylate kinase PF553_07930 IPR036393 Acetylglutamate kinase-like superfamily PF553_07935 IPR002661 Ribosome recycling factor PF553_07935 IPR036191 RRF superfamily PF553_07935 IPR023584 Ribosome recycling factor domain PF553_07940 IPR001441 Decaprenyl diphosphate synthase-like PF553_07940 IPR018520 Di-trans-poly-cis-decaprenylcistransferase-like, conserved site PF553_07940 IPR036424 Decaprenyl diphosphate synthase-like superfamily PF553_07945 IPR000374 Phosphatidate cytidylyltransferase PF553_07950 IPR003821 1-deoxy-D-xylulose 5-phosphate reductoisomerase PF553_07950 IPR013644 1-deoxy-D-xylulose 5-phosphate reductoisomerase, C-terminal PF553_07950 IPR013512 1-deoxy-D-xylulose 5-phosphate reductoisomerase, N-terminal PF553_07950 IPR026877 DXP reductoisomerase C-terminal domain PF553_07950 IPR036291 NAD(P)-binding domain superfamily PF553_07950 IPR036169 DXP reductoisomerase, C-terminal domain superfamily PF553_07955 IPR041489 PDZ domain 6 PF553_07955 IPR004387 Peptidase M50, putative membrane-associated zinc metallopeptidase PF553_07955 IPR008915 Peptidase M50 PF553_07955 IPR036034 PDZ superfamily PF553_07955 IPR001478 PDZ domain PF553_07960 IPR039910 Surface antigen D15-like PF553_07960 IPR000184 Bacterial surface antigen (D15) PF553_07960 IPR010827 POTRA domain, BamA/TamA-like PF553_07960 IPR023707 Outer membrane protein assembly factor BamA PF553_07960 IPR034746 POTRA domain PF553_07970 IPR007691 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase LpxD PF553_07970 IPR011004 Trimeric LpxA-like superfamily PF553_07970 IPR001451 Hexapeptide repeat PF553_07970 IPR020573 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, non-repeat region PF553_07975 IPR010084 Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabZ PF553_07975 IPR013114 Beta-hydroxydecanoyl thiol ester dehydrase, FabA/FabZ PF553_07975 IPR029069 HotDog domain superfamily PF553_07980 IPR018357 Hexapeptide transferase, conserved site PF553_07980 IPR010137 Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase PF553_07980 IPR037157 UDP-N-acetylglucosamine O-acyltransferase, C-terminal domain superfamily PF553_07980 IPR001451 Hexapeptide repeat PF553_07980 IPR029098 UDP N-acetylglucosamine O-acyltransferase, C-terminal PF553_07980 IPR011004 Trimeric LpxA-like superfamily PF553_07995 IPR003783 Regulatory protein RecX PF553_07995 IPR036388 Winged helix-like DNA-binding domain superfamily PF553_08000 IPR020587 DNA recombination and repair protein RecA, monomer-monomer interface PF553_08000 IPR023400 DNA recombination and repair protein RecA, C-terminal PF553_08000 IPR013765 DNA recombination and repair protein RecA PF553_08000 IPR003593 AAA+ ATPase domain PF553_08000 IPR027417 P-loop containing nucleoside triphosphate hydrolase PF553_08000 IPR020588 DNA recombination and repair protein RecA-like, ATP-binding domain PF553_08000 IPR020584 DNA recombination/repair protein RecA, conserved site PF553_08005 IPR002942 RNA-binding S4 domain PF553_08005 IPR036986 RNA-binding S4 domain superfamily PF553_08005 IPR025708 Heat shock protein 15 PF553_08010 IPR036412 HAD-like superfamily PF553_08010 IPR006439 HAD hydrolase, subfamily IA PF553_08010 IPR041492 Haloacid dehalogenase-like hydrolase PF553_08010 IPR023214 HAD superfamily PF553_08035 IPR011991 ArsR-like helix-turn-helix domain PF553_08035 IPR011008 Dimeric alpha-beta barrel PF553_08035 IPR000485 AsnC-type HTH domain PF553_08035 IPR019888 Transcription regulator AsnC-type PF553_08035 IPR036390 Winged helix DNA-binding domain superfamily PF553_08035 IPR036388 Winged helix-like DNA-binding domain superfamily PF553_08035 IPR019885 Transcription regulator HTH, AsnC-type, conserved site PF553_08035 IPR019887 Transcription regulator AsnC/Lrp, ligand binding domain PF553_08040 IPR015421 Pyridoxal phosphate-dependent transferase, major domain PF553_08040 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 PF553_08040 IPR015424 Pyridoxal phosphate-dependent transferase PF553_08040 IPR010111 Kynureninase PF553_08040 IPR000192 Aminotransferase class V domain PF553_08045 IPR004840 Amino acid permease, conserved site PF553_08045 IPR004841 Amino acid permease/ SLC12A domain PF553_08060 IPR034193 Proteinase K-like catalytic domain PF553_08060 IPR000209 Peptidase S8/S53 domain PF553_08060 IPR036852 Peptidase S8/S53 domain superfamily PF553_08060 IPR023827 Peptidase S8, subtilisin, Asp-active site PF553_08060 IPR022398 Peptidase S8, subtilisin, His-active site PF553_08060 IPR023828 Peptidase S8, subtilisin, Ser-active site PF553_08060 IPR015500 Peptidase S8, subtilisin-related PF553_08060 IPR010259 Peptidase S8 propeptide/proteinase inhibitor I9 PF553_08060 IPR037045 Peptidase S8 propeptide/proteinase inhibitor I9 superfamily PF553_08070 IPR024474 Zinc-finger binding domain of transposase IS66 PF553_08070 IPR024463 Transposase TnpC, homeodomain PF553_08070 IPR004291 Transposase, IS66 PF553_08070 IPR039552 Transposase IS66, C-terminal PF553_08080 IPR009057 Homeobox-like domain superfamily PF553_08085 IPR036513 STAS domain superfamily PF553_08085 IPR002645 STAS domain PF553_08085 IPR018045 Sulphate anion transporter, conserved site PF553_08085 IPR001902 SLC26A/SulP transporter PF553_08085 IPR011547 SLC26A/SulP transporter domain PF553_08090 IPR036590 SOS response associated peptidase-like PF553_08090 IPR003738 SOS response associated peptidase (SRAP) PF553_08095 IPR019893 PQQ-dependent dehydrogenase, s-GDH family PF553_08095 IPR011041 Soluble quinoprotein glucose/sorbosone dehydrogenase PF553_08095 IPR011042 Six-bladed beta-propeller, TolB-like PF553_08095 IPR012938 Glucose/Sorbosone dehydrogenase PF553_08105 IPR009057 Homeobox-like domain superfamily PF553_08115 IPR024474 Zinc-finger binding domain of transposase IS66 PF553_08115 IPR024463 Transposase TnpC, homeodomain PF553_08115 IPR004291 Transposase, IS66 PF553_08115 IPR039552 Transposase IS66, C-terminal PF553_08125 IPR000160 GGDEF domain PF553_08125 IPR035919 EAL domain superfamily PF553_08125 IPR005330 MHYT domain PF553_08125 IPR029787 Nucleotide cyclase PF553_08125 IPR035965 PAS domain superfamily PF553_08125 IPR001633 EAL domain PF553_08140 IPR036095 PTS system IIB component-like superfamily PF553_08140 IPR003352 Phosphotransferase system, EIIC PF553_08140 IPR013011 Phosphotransferase system, EIIB component, type 2 PF553_08140 IPR013014 Phosphotransferase system, EIIC component, type 2 PF553_08140 IPR003501 Phosphotransferase system, EIIB component, type 2/3 PF553_08140 IPR003353 Phosphotransferase system, fructose-specific IIB subunit PF553_08140 IPR006327 Phosphotransferase system, fructose IIC component PF553_08145 IPR017583 Tagatose/fructose phosphokinase PF553_08145 IPR029056 Ribokinase-like PF553_08145 IPR011611 Carbohydrate kinase PfkB PF553_08145 IPR002173 Carbohydrate/puine kinase, PfkB, conserved site PF553_08145 IPR022463 Fructose 1-phosphate kinase PF553_08150 IPR023151 PEP-utilising enzyme, conserved site PF553_08150 IPR000121 PEP-utilising enzyme, C-terminal PF553_08150 IPR018274 PEP-utilising enzyme, active site PF553_08150 IPR008279 PEP-utilising enzyme, mobile domain PF553_08150 IPR035895 HPr-like superfamily PF553_08150 IPR000032 Phosphocarrier protein HPr-like PF553_08150 IPR016152 Phosphotransferase/anion transporter PF553_08150 IPR006318 Phosphotransferase system, enzyme I-like PF553_08150 IPR036637 Phosphohistidine domain superfamily PF553_08150 IPR040442 Pyruvate kinase-like domain superfamily PF553_08150 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain superfamily PF553_08150 IPR036618 PtsI, HPr-binding domain superfamily PF553_08150 IPR002114 Phosphotransferase system, HPr serine phosphorylation site PF553_08150 IPR001020 Phosphotransferase system, HPr histidine phosphorylation site PF553_08150 IPR008731 Phosphotransferase system, enzyme I N-terminal PF553_08150 IPR002178 PTS EIIA type-2 domain PF553_08175 IPR004685 Branched-chain amino acid transport system II carrier protein PF553_08180 IPR036005 Creatinase/aminopeptidase-like PF553_08180 IPR000994 Peptidase M24 PF553_08180 IPR001714 Peptidase M24, methionine aminopeptidase PF553_08180 IPR002467 Peptidase M24A, methionine aminopeptidase, subfamily 1 PF553_08185 IPR005119 LysR, substrate-binding PF553_08185 IPR036388 Winged helix-like DNA-binding domain superfamily PF553_08185 IPR036390 Winged helix DNA-binding domain superfamily PF553_08185 IPR000847 Transcription regulator HTH, LysR PF553_08195 IPR036249 Thioredoxin-like superfamily PF553_08195 IPR014434 Monothiol glutaredoxin PF553_08195 IPR033658 Glutaredoxin, PICOT-like PF553_08195 IPR002109 Glutaredoxin PF553_08195 IPR004480 Monothiol glutaredoxin-related PF553_08200 IPR015421 Pyridoxal phosphate-dependent transferase, major domain PF553_08200 IPR015424 Pyridoxal phosphate-dependent transferase PF553_08200 IPR005814 Aminotransferase class-III PF553_08200 IPR004636 Acetylornithine/Succinylornithine transaminase family PF553_08200 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 PF553_08205 IPR001093 IMP dehydrogenase/GMP reductase PF553_08205 IPR013785 Aldolase-type TIM barrel PF553_08205 IPR000644 CBS domain PF553_08205 IPR005990 Inosine-5'-monophosphate dehydrogenase PF553_08205 IPR015875 IMP dehydrogenase / GMP reductase, conserved site PF553_08230 IPR003593 AAA+ ATPase domain PF553_08230 IPR027417 P-loop containing nucleoside triphosphate hydrolase PF553_08230 IPR013822 Signal recognition particle SRP54, helical bundle PF553_08230 IPR004390 Signal-recognition particle receptor FtsY PF553_08230 IPR036225 SRP/SRP receptor, N-terminal PF553_08230 IPR000897 Signal recognition particle, SRP54 subunit, GTPase domain PF553_08230 IPR042101 Signal recognition particle SRP54, N-terminal domain superfamily PF553_08240 IPR018635 Uncharacterised protein family UPF0319 PF553_08250 IPR011724 Cyd operon protein YbgT PF553_08250 IPR012994 Membrane bound YbgT-like PF553_08255 IPR003317 Cytochrome ubiquinol oxidase subunit 2 PF553_08260 IPR002585 Cytochrome ubiquinol oxidase subunit 1 PF553_08270 IPR039552 Transposase IS66, C-terminal PF553_08270 IPR004291 Transposase, IS66 PF553_08270 IPR024463 Transposase TnpC, homeodomain PF553_08270 IPR024474 Zinc-finger binding domain of transposase IS66 PF553_08280 IPR009057 Homeobox-like domain superfamily PF553_08285 IPR010840 Protein of unknown function DUF1449 PF553_08295 IPR002173 Carbohydrate/puine kinase, PfkB, conserved site PF553_08295 IPR011611 Carbohydrate kinase PfkB PF553_08295 IPR029056 Ribokinase-like PF553_08300 IPR036942 TonB-dependent receptor-like, beta-barrel domain superfamily PF553_08300 IPR037066 TonB-dependent receptor, plug domain superfamily PF553_08300 IPR039423 TonB-dependent receptor-like PF553_08300 IPR000531 TonB-dependent receptor-like, beta-barrel PF553_08300 IPR012910 TonB-dependent receptor, plug domain PF553_08300 IPR010105 TonB-dependent siderophore receptor PF553_08300 IPR010917 TonB-dependent receptor, conserved site PF553_08305 IPR011249 Metalloenzyme, LuxS/M16 peptidase-like PF553_08305 IPR011765 Peptidase M16, N-terminal PF553_08305 IPR007863 Peptidase M16, C-terminal PF553_08305 IPR013578 Peptidase M16C associated PF553_08310 IPR003187 Phospholipase A1 PF553_08310 IPR036541 Phospholipase A1 superfamily PF553_08315 IPR004772 TrkH potassium transport family PF553_08315 IPR003445 Cation transporter PF553_08320 IPR006037 Regulator of K+ conductance, C-terminal PF553_08320 IPR036291 NAD(P)-binding domain superfamily PF553_08320 IPR036721 Regulator of K+ conductance, C-terminal domain superfamily PF553_08320 IPR003148 Regulator of K+ conductance, N-terminal PF553_08325 IPR005787 Threonine dehydratase, biosynthetic PF553_08325 IPR036052 Tryptophan synthase beta subunit-like PLP-dependent enzyme PF553_08325 IPR038110 Threonine dehydratase, ACT-like domain superfamily PF553_08325 IPR000634 Serine/threonine dehydratase, pyridoxal-phosphate-binding site PF553_08325 IPR001721 Threonine dehydratase, ACT-like domain PF553_08325 IPR001926 Pyridoxal-phosphate dependent enzyme PF553_08330 IPR020672 Ribose-5-phosphate isomerase, type A, subgroup PF553_08330 IPR037171 NagB/RpiA transferase-like PF553_08330 IPR004788 Ribose 5-phosphate isomerase, type A PF553_08345 IPR023013 N-acetyl-gamma-glutamyl-phosphate reductase, active site PF553_08345 IPR012280 Semialdehyde dehydrogenase, dimerisation domain PF553_08345 IPR000534 Semialdehyde dehydrogenase, NAD-binding PF553_08345 IPR036291 NAD(P)-binding domain superfamily PF553_08345 IPR000706 N-acetyl-gamma-glutamyl-phosphate reductase, type 1 PF553_08355 IPR022935 ATP-dependent Clp protease adaptor protein ClpS PF553_08355 IPR003769 Adaptor protein ClpS, core PF553_08355 IPR014719 Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-like PF553_08360 IPR003959 ATPase, AAA-type, core PF553_08360 IPR018368 ClpA/B, conserved site 1 PF553_08360 IPR001270 ClpA/B family PF553_08360 IPR036628 Clp, N-terminal domain superfamily PF553_08360 IPR004176 Clp, N-terminal PF553_08360 IPR019489 Clp ATPase, C-terminal PF553_08360 IPR028299 ClpA/B, conserved site 2 PF553_08360 IPR041546 ClpA/ClpB, AAA lid domain PF553_08360 IPR027417 P-loop containing nucleoside triphosphate hydrolase PF553_08360 IPR013461 ATP-dependent Clp protease ATP-binding subunit ClpA PF553_08360 IPR003593 AAA+ ATPase domain PF553_08365 IPR003844 Uncharacterised protein family UPF0060 PF553_08370 IPR013785 Aldolase-type TIM barrel PF553_08370 IPR006218 DAHP synthetase I/KDSA PF553_08370 IPR006219 DHAP synthase, class 1 PF553_08385 IPR001155 NADH:flavin oxidoreductase/NADH oxidase, N-terminal PF553_08385 IPR023753 FAD/NAD(P)-binding domain PF553_08385 IPR013785 Aldolase-type TIM barrel PF553_08385 IPR036188 FAD/NAD(P)-binding domain superfamily PF553_08415 IPR027417 P-loop containing nucleoside triphosphate hydrolase PF553_08415 IPR033828 CTP synthase GATase domain PF553_08415 IPR017456 CTP synthase, N-terminal PF553_08415 IPR017926 Glutamine amidotransferase PF553_08415 IPR004468 CTP synthase PF553_08415 IPR029062 Class I glutamine amidotransferase-like PF553_08420 IPR013785 Aldolase-type TIM barrel PF553_08420 IPR006218 DAHP synthetase I/KDSA PF553_08420 IPR006269 3-deoxy-8-phosphooctulonate synthase PF553_08425 IPR000941 Enolase PF553_08425 IPR036849 Enolase-like, C-terminal domain superfamily PF553_08425 IPR029017 Enolase-like, N-terminal PF553_08425 IPR020810 Enolase, C-terminal TIM barrel domain PF553_08425 IPR020809 Enolase, conserved site PF553_08425 IPR020811 Enolase, N-terminal PF553_08430 IPR023090 UPF0702, alpha/beta domain superfamily PF553_08430 IPR007353 Protein of unknown function DUF421 PF553_08435 IPR023081 Cell division protein FtsB PF553_08435 IPR007060 Septum formation initiator FtsL/DivIC PF553_08440 IPR001228 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase PF553_08440 IPR034683 Cytidylyltransferase IspD/TarI PF553_08440 IPR018294 4-diphosphocytidyl-2C-methyl-D-erythritol synthase, conserved site PF553_08440 IPR029044 Nucleotide-diphospho-sugar transferases PF553_08445 IPR037171 NagB/RpiA transferase-like PF553_08445 IPR004165 Coenzyme A transferase family I PF553_08445 IPR012792 3-oxoacid CoA-transferase, subunit A PF553_08445 IPR004163 Coenzyme A transferase binding site PF553_08450 IPR012791 3-oxoacid CoA-transferase, subunit B PF553_08450 IPR004165 Coenzyme A transferase family I PF553_08450 IPR004164 Coenzyme A transferase active site PF553_08450 IPR037171 NagB/RpiA transferase-like PF553_08455 IPR020610 Thiolase, active site PF553_08455 IPR012793 Beta-ketoadipyl CoA thiolase PF553_08455 IPR002155 Thiolase PF553_08455 IPR020616 Thiolase, N-terminal PF553_08455 IPR016039 Thiolase-like PF553_08455 IPR020615 Thiolase, acyl-enzyme intermediate active site PF553_08455 IPR020617 Thiolase, C-terminal PF553_08455 IPR020613 Thiolase, conserved site PF553_08460 IPR008948 L-Aspartase-like PF553_08460 IPR000362 Fumarate lyase family PF553_08460 IPR019468 Adenylosuccinate lyase C-terminal PF553_08460 IPR024083 Fumarase/histidase, N-terminal PF553_08460 IPR020557 Fumarate lyase, conserved site PF553_08460 IPR012789 3-carboxy-cis,cis-muconate cycloisomerase PF553_08460 IPR022761 Fumarate lyase, N-terminal PF553_08465 IPR000073 Alpha/beta hydrolase fold-1 PF553_08465 IPR026968 3-oxoadipate enol-lactonase 1/2 PF553_08465 IPR029058 Alpha/Beta hydrolase fold PF553_08470 IPR005829 Sugar transporter, conserved site PF553_08470 IPR036259 MFS transporter superfamily PF553_08470 IPR020846 Major facilitator superfamily domain PF553_08470 IPR004746 Major facilitator superfamily, aromatic acid:H+ symporter family PF553_08470 IPR011701 Major facilitator superfamily PF553_08475 IPR012788 4-carboxymuconolactone decarboxylase PF553_08475 IPR029032 AhpD-like PF553_08475 IPR003779 Carboxymuconolactone decarboxylase-like PF553_08480 IPR012785 Protocatechuate 3,4-dioxygenase, beta subunit PF553_08480 IPR024756 Protocatechuate 3,4-dioxygenase beta subunit, N-terminal PF553_08480 IPR015889 Intradiol ring-cleavage dioxygenase, core PF553_08480 IPR000627 Intradiol ring-cleavage dioxygenase, C-terminal PF553_08485 IPR000627 Intradiol ring-cleavage dioxygenase, C-terminal PF553_08485 IPR012786 Protocatechuate 3,4-dioxygenase, alpha subunit PF553_08485 IPR015889 Intradiol ring-cleavage dioxygenase, core PF553_08490 IPR018508 3-dehydroquinate dehydratase, active site PF553_08490 IPR013785 Aldolase-type TIM barrel PF553_08490 IPR001381 3-dehydroquinate dehydratase type I PF553_08495 IPR007742 Periplasmic copper-binding protein NosD, beta helix domain PF553_08495 IPR006626 Parallel beta-helix repeat PF553_08495 IPR012334 Pectin lyase fold PF553_08495 IPR011050 Pectin lyase fold/virulence factor PF553_08500 IPR007049 Carbohydrate-selective porin OprB PF553_08500 IPR038673 Carbohydrate-selective porin OprB superfamily PF553_08505 IPR001479 Quinoprotein dehydrogenase, conserved site PF553_08505 IPR002372 Pyrrolo-quinoline quinone repeat PF553_08505 IPR018391 Pyrrolo-quinoline quinone beta-propeller repeat PF553_08505 IPR017511 PQQ-dependent membrane bound dehydrogenase PF553_08505 IPR011047 Quinoprotein alcohol dehydrogenase-like superfamily PF553_08515 IPR007272 Sulphur transport domain PF553_08525 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like PF553_08525 IPR001279 Metallo-beta-lactamase PF553_08530 IPR036390 Winged helix DNA-binding domain superfamily PF553_08530 IPR036388 Winged helix-like DNA-binding domain superfamily PF553_08530 IPR005471 Transcription regulator IclR, N-terminal PF553_08530 IPR014757 Transcription regulator IclR, C-terminal PF553_08530 IPR012794 Beta-ketoadipate transcriptional regulator, PcaR/PcaU/PobR PF553_08530 IPR029016 GAF-like domain superfamily PF553_08535 IPR000847 Transcription regulator HTH, LysR PF553_08535 IPR036390 Winged helix DNA-binding domain superfamily PF553_08535 IPR005119 LysR, substrate-binding PF553_08535 IPR037416 Nodulation protein D, PBP2 PF553_08535 IPR036388 Winged helix-like DNA-binding domain superfamily PF553_08540 IPR036250 Acyl-CoA dehydrogenase-like, C-terminal PF553_08540 IPR006089 Acyl-CoA dehydrogenase, conserved site PF553_08540 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal PF553_08540 IPR037069 Acyl-CoA dehydrogenase/oxidase, N-terminal domain superfamily PF553_08540 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily PF553_08540 IPR006091 Acyl-CoA oxidase/dehydrogenase, central domain PF553_08540 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal PF553_08555 IPR036291 NAD(P)-binding domain superfamily PF553_08555 IPR020904 Short-chain dehydrogenase/reductase, conserved site PF553_08555 IPR002347 Short-chain dehydrogenase/reductase SDR PF553_08565 IPR011701 Major facilitator superfamily PF553_08565 IPR020846 Major facilitator superfamily domain PF553_08565 IPR036259 MFS transporter superfamily PF553_08575 IPR000120 Amidase PF553_08575 IPR020556 Amidase, conserved site PF553_08575 IPR036928 Amidase signature (AS) superfamily PF553_08575 IPR004412 Glutamyl-tRNA(Gln) amidotransferase A subunit PF553_08575 IPR023631 Amidase signature domain PF553_08580 IPR013107 Acyl-CoA dehydrogenase, C-terminal domain PF553_08580 IPR036250 Acyl-CoA dehydrogenase-like, C-terminal PF553_08580 IPR037069 Acyl-CoA dehydrogenase/oxidase, N-terminal domain superfamily PF553_08580 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily PF553_08595 IPR017639 Benzoate 1,2-dioxygenase, large subunit PF553_08595 IPR017941 Rieske [2Fe-2S] iron-sulphur domain PF553_08595 IPR015881 Aromatic-ring-hydroxylating dioxygenase, 2Fe-2S-binding site PF553_08595 IPR015879 Aromatic-ring-hydroxylating dioxygenase, alpha subunit, C-terminal domain PF553_08595 IPR001663 Aromatic-ring-hydroxylating dioxygenase, alpha subunit PF553_08595 IPR036922 Rieske [2Fe-2S] iron-sulphur domain superfamily PF553_08605 IPR036291 NAD(P)-binding domain superfamily PF553_08605 IPR020904 Short-chain dehydrogenase/reductase, conserved site PF553_08605 IPR002347 Short-chain dehydrogenase/reductase SDR PF553_08605 IPR011284 3-oxoacyl-(acyl-carrier-protein) reductase PF553_08610 IPR036010 2Fe-2S ferredoxin-like superfamily PF553_08610 IPR017938 Riboflavin synthase-like beta-barrel PF553_08610 IPR000951 Phthalate dioxygenase reductase PF553_08610 IPR039261 Ferredoxin-NADP reductase (FNR), nucleotide-binding domain PF553_08610 IPR001433 Oxidoreductase FAD/NAD(P)-binding PF553_08610 IPR012675 Beta-grasp domain superfamily PF553_08610 IPR006058 2Fe-2S ferredoxin, iron-sulphur binding site PF553_08610 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain PF553_08610 IPR017927 FAD-binding domain, ferredoxin reductase-type PF553_08615 IPR002563 Flavin reductase like domain PF553_08615 IPR012349 FMN-binding split barrel PF553_08615 IPR036388 Winged helix-like DNA-binding domain superfamily PF553_08615 IPR036390 Winged helix DNA-binding domain superfamily PF553_08620 IPR020449 Transcription regulator HTH, AraC- type PF553_08620 IPR023609 Transcription regulator HTH, RhaS PF553_08620 IPR014710 RmlC-like jelly roll fold PF553_08620 IPR018060 DNA binding HTH domain, AraC-type PF553_08620 IPR037923 Transcription regulator HTH-like PF553_08620 IPR009057 Homeobox-like domain superfamily PF553_08620 IPR003313 AraC-type arabinose-binding/dimerisation domain PF553_08625 IPR000269 Copper amine oxidase PF553_08625 IPR012854 Copper amine oxidase-like, N-terminal PF553_08625 IPR015798 Copper amine oxidase, catalytic domain PF553_08625 IPR036460 Copper amine oxidase, catalytic domain superfamily PF553_08625 IPR016182 Copper amine oxidase, N-terminal PF553_08625 IPR015800 Copper amine oxidase, N2-terminal PF553_08625 IPR015802 Copper amine oxidase, N3-terminal PF553_08625 IPR036582 Copper amine oxidase-like, N-terminal domain superfamily PF553_08635 IPR015590 Aldehyde dehydrogenase domain PF553_08635 IPR029510 Aldehyde dehydrogenase, glutamic acid active site PF553_08635 IPR016160 Aldehyde dehydrogenase, cysteine active site PF553_08635 IPR016163 Aldehyde dehydrogenase, C-terminal PF553_08635 IPR016161 Aldehyde/histidinol dehydrogenase PF553_08635 IPR016162 Aldehyde dehydrogenase, N-terminal PF553_08640 IPR014395 Penicillin/GL-7-ACA/AHL acylase PF553_08640 IPR002692 Penicillin/GL-7-ACA/AHL/aculeacin-A acylase PF553_08640 IPR033813 Penicillin G acylase, C-terminal PF553_08640 IPR023343 Penicillin amidase type, domain 1 PF553_08640 IPR029055 Nucleophile aminohydrolases, N-terminal PF553_08645 IPR022742 Serine aminopeptidase, S33 PF553_08645 IPR029058 Alpha/Beta hydrolase fold PF553_08645 IPR000073 Alpha/beta hydrolase fold-1 PF553_08645 IPR026968 3-oxoadipate enol-lactonase 1/2 PF553_08650 IPR016039 Thiolase-like PF553_08650 IPR002155 Thiolase PF553_08650 IPR012793 Beta-ketoadipyl CoA thiolase PF553_08650 IPR020615 Thiolase, acyl-enzyme intermediate active site PF553_08650 IPR020617 Thiolase, C-terminal PF553_08650 IPR020613 Thiolase, conserved site PF553_08650 IPR020616 Thiolase, N-terminal PF553_08650 IPR020610 Thiolase, active site PF553_08655 IPR004165 Coenzyme A transferase family I PF553_08655 IPR012791 3-oxoacid CoA-transferase, subunit B PF553_08655 IPR004164 Coenzyme A transferase active site PF553_08655 IPR037171 NagB/RpiA transferase-like PF553_08660 IPR004165 Coenzyme A transferase family I PF553_08660 IPR037171 NagB/RpiA transferase-like PF553_08660 IPR012792 3-oxoacid CoA-transferase, subunit A PF553_08660 IPR004163 Coenzyme A transferase binding site PF553_08665 IPR007535 Catechol dioxygenase, N-terminal PF553_08665 IPR012801 Catechol 1,2-dioxygenase, proteobacteria PF553_08665 IPR000627 Intradiol ring-cleavage dioxygenase, C-terminal PF553_08665 IPR015889 Intradiol ring-cleavage dioxygenase, core PF553_08670 IPR011008 Dimeric alpha-beta barrel PF553_08670 IPR026029 Muconolactone isomerase domain PF553_08670 IPR003464 Muconolactone delta-isomerase PF553_08675 IPR018110 Mandelate racemase/muconate lactonizing enzyme, conserved site PF553_08675 IPR036849 Enolase-like, C-terminal domain superfamily PF553_08675 IPR029065 Enolase C-terminal domain-like PF553_08675 IPR013370 Muconate/chloromuconate cycloisomerase PF553_08675 IPR013342 Mandelate racemase/muconate lactonizing enzyme, C-terminal PF553_08675 IPR013341 Mandelate racemase/muconate lactonizing enzyme, N-terminal domain PF553_08675 IPR029017 Enolase-like, N-terminal PF553_08680 IPR005119 LysR, substrate-binding PF553_08680 IPR000847 Transcription regulator HTH, LysR PF553_08680 IPR036390 Winged helix DNA-binding domain superfamily PF553_08680 IPR036388 Winged helix-like DNA-binding domain superfamily PF553_08690 IPR011711 GntR, C-terminal PF553_08690 IPR008920 Transcription regulator FadR/GntR, C-terminal PF553_08690 IPR000524 Transcription regulator HTH, GntR PF553_08690 IPR036388 Winged helix-like DNA-binding domain superfamily PF553_08690 IPR036390 Winged helix DNA-binding domain superfamily PF553_08695 IPR037237 IlvD/EDD, N-terminal domain PF553_08695 IPR042096 Dihydroxy-acid dehydratase, C-terminal PF553_08695 IPR020558 Dihydroxy-acid/6-phosphogluconate dehydratase, conserved site PF553_08695 IPR000581 Dihydroxy-acid/6-phosphogluconate dehydratase PF553_08700 IPR011701 Major facilitator superfamily PF553_08700 IPR020846 Major facilitator superfamily domain PF553_08700 IPR036259 MFS transporter superfamily PF553_08710 IPR016163 Aldehyde dehydrogenase, C-terminal PF553_08710 IPR016161 Aldehyde/histidinol dehydrogenase PF553_08710 IPR016162 Aldehyde dehydrogenase, N-terminal PF553_08710 IPR015590 Aldehyde dehydrogenase domain PF553_08720 IPR000639 Epoxide hydrolase-like PF553_08720 IPR000073 Alpha/beta hydrolase fold-1 PF553_08720 IPR029058 Alpha/Beta hydrolase fold PF553_08725 IPR036188 FAD/NAD(P)-binding domain superfamily PF553_08725 IPR013785 Aldolase-type TIM barrel PF553_08725 IPR001155 NADH:flavin oxidoreductase/NADH oxidase, N-terminal PF553_08725 IPR023753 FAD/NAD(P)-binding domain PF553_08740 IPR015358 Transcription regulator MerR, DNA binding PF553_08740 IPR000551 MerR-type HTH domain PF553_08740 IPR011789 Cu(I)-responsive transcriptional regulator PF553_08740 IPR009061 Putative DNA-binding domain superfamily PF553_08750 IPR036188 FAD/NAD(P)-binding domain superfamily PF553_08750 IPR023753 FAD/NAD(P)-binding domain PF553_08760 IPR024884 N-acyl-phosphatidylethanolamine-hydrolysing phospholipase D PF553_08760 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like PF553_08760 IPR001279 Metallo-beta-lactamase PF553_08765 IPR009057 Homeobox-like domain superfamily PF553_08765 IPR001647 DNA-binding HTH domain, TetR-type PF553_08765 IPR036271 Tetracyclin repressor-like, C-terminal domain superfamily PF553_08765 IPR013570 Transcription regulator YsiA, C-terminal PF553_08775 IPR000868 Isochorismatase-like PF553_08775 IPR036380 Isochorismatase-like superfamily PF553_08780 IPR036390 Winged helix DNA-binding domain superfamily PF553_08780 IPR005119 LysR, substrate-binding PF553_08780 IPR000847 Transcription regulator HTH, LysR PF553_08780 IPR036388 Winged helix-like DNA-binding domain superfamily PF553_08785 IPR011041 Soluble quinoprotein glucose/sorbosone dehydrogenase PF553_08785 IPR019893 PQQ-dependent dehydrogenase, s-GDH family PF553_08785 IPR012938 Glucose/Sorbosone dehydrogenase PF553_08785 IPR011042 Six-bladed beta-propeller, TolB-like PF553_08790 IPR038770 Sodium/solute symporter superfamily PF553_08790 IPR036291 NAD(P)-binding domain superfamily PF553_08790 IPR003148 Regulator of K+ conductance, N-terminal PF553_08790 IPR006153 Cation/H+ exchanger PF553_08790 IPR004771 K+/H+ exchanger PF553_08800 IPR017439 Amidohydrolase PF553_08800 IPR011650 Peptidase M20, dimerisation domain PF553_08800 IPR002933 Peptidase M20 PF553_08800 IPR036264 Bacterial exopeptidase dimerisation domain PF553_08810 IPR031303 DNA methylase, C-5 cytosine-specific, conserved site PF553_08810 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase PF553_08810 IPR001525 C-5 cytosine methyltransferase PF553_08810 IPR018117 DNA methylase, C-5 cytosine-specific, active site PF553_08815 IPR003594 Histidine kinase/HSP90-like ATPase PF553_08815 IPR036890 Histidine kinase/HSP90-like ATPase superfamily PF553_08815 IPR005467 Histidine kinase domain PF553_08815 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain PF553_08815 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily PF553_08815 IPR029151 Periplasmic sensor-like domain superfamily PF553_08815 IPR004358 Signal transduction histidine kinase-related protein, C-terminal PF553_08835 IPR011701 Major facilitator superfamily PF553_08835 IPR020846 Major facilitator superfamily domain PF553_08835 IPR036259 MFS transporter superfamily PF553_08840 IPR032466 Metal-dependent hydrolase PF553_08840 IPR006680 Amidohydrolase-related PF553_08850 IPR028978 Chorismate pyruvate-lyase/UbiC transcription regulator-associated domain superfamily PF553_08850 IPR011663 UbiC transcription regulator-associated PF553_08850 IPR036388 Winged helix-like DNA-binding domain superfamily PF553_08850 IPR036390 Winged helix DNA-binding domain superfamily PF553_08850 IPR000524 Transcription regulator HTH, GntR PF553_08855 IPR011042 Six-bladed beta-propeller, TolB-like PF553_08855 IPR013658 SMP-30/Gluconolactonase/LRE-like region PF553_08855 IPR005511 Senescence marker protein-30 (SMP-30) PF553_08865 IPR005119 LysR, substrate-binding PF553_08865 IPR000847 Transcription regulator HTH, LysR PF553_08865 IPR036388 Winged helix-like DNA-binding domain superfamily PF553_08865 IPR036390 Winged helix DNA-binding domain superfamily PF553_08890 IPR005694 Efflux pump membrane protein PF553_08890 IPR032317 RND efflux pump, membrane fusion protein, barrel-sandwich domain PF553_08905 IPR016163 Aldehyde dehydrogenase, C-terminal PF553_08905 IPR016161 Aldehyde/histidinol dehydrogenase PF553_08905 IPR016162 Aldehyde dehydrogenase, N-terminal PF553_08905 IPR015590 Aldehyde dehydrogenase domain PF553_08910 IPR042096 Dihydroxy-acid dehydratase, C-terminal PF553_08910 IPR020558 Dihydroxy-acid/6-phosphogluconate dehydratase, conserved site PF553_08910 IPR037237 IlvD/EDD, N-terminal domain PF553_08910 IPR000581 Dihydroxy-acid/6-phosphogluconate dehydratase PF553_08920 IPR005119 LysR, substrate-binding PF553_08920 IPR000847 Transcription regulator HTH, LysR PF553_08920 IPR036388 Winged helix-like DNA-binding domain superfamily PF553_08920 IPR036390 Winged helix DNA-binding domain superfamily PF553_08925 IPR001509 NAD-dependent epimerase/dehydratase PF553_08925 IPR036291 NAD(P)-binding domain superfamily PF553_08930 IPR020846 Major facilitator superfamily domain PF553_08930 IPR011701 Major facilitator superfamily PF553_08930 IPR036259 MFS transporter superfamily PF553_08935 IPR002204 3-hydroxyisobutyrate dehydrogenase-related, conserved site PF553_08935 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily PF553_08935 IPR013328 6-phosphogluconate dehydrogenase, domain 2 PF553_08935 IPR006115 6-phosphogluconate dehydrogenase, NADP-binding PF553_08935 IPR015815 3-hydroxyisobutyrate dehydrogenase-related PF553_08935 IPR036291 NAD(P)-binding domain superfamily PF553_08935 IPR029154 3-hydroxyisobutyrate dehydrogenase, NAD-binding domain PF553_08935 IPR006398 2-hydroxy-3-oxopropionate reductase PF553_08940 IPR009594 Transcription regulator HTH, AraC, N-terminal PF553_08940 IPR018060 DNA binding HTH domain, AraC-type PF553_08940 IPR009057 Homeobox-like domain superfamily PF553_08955 IPR013149 Alcohol dehydrogenase, C-terminal PF553_08955 IPR036291 NAD(P)-binding domain superfamily PF553_08955 IPR011032 GroES-like superfamily PF553_08955 IPR020843 Polyketide synthase, enoylreductase domain PF553_08955 IPR013154 Alcohol dehydrogenase, N-terminal PF553_08955 IPR002328 Alcohol dehydrogenase, zinc-type, conserved site PF553_08965 IPR037294 ABC transporter, BtuC-like PF553_08965 IPR000522 ABC transporter, permease protein, BtuC-like PF553_08970 IPR003593 AAA+ ATPase domain PF553_08970 IPR003439 ABC transporter-like PF553_08970 IPR017871 ABC transporter, conserved site PF553_08970 IPR027417 P-loop containing nucleoside triphosphate hydrolase PF553_08990 IPR005946 Ribose-phosphate pyrophosphokinase PF553_08990 IPR037515 Ribose-phosphate pyrophosphokinase, bacterial-type PF553_08990 IPR029057 Phosphoribosyltransferase-like PF553_08990 IPR000842 Phosphoribosyl pyrophosphate synthetase, conserved site PF553_08990 IPR029099 Ribose-phosphate pyrophosphokinase, N-terminal domain PF553_08990 IPR000836 Phosphoribosyltransferase domain PF553_09015 IPR039562 Membrane fusion protein, biotin-lipoyl like domain PF553_09020 IPR004638 Drug resistance transporter EmrB-like PF553_09020 IPR011701 Major facilitator superfamily PF553_09020 IPR020846 Major facilitator superfamily domain PF553_09020 IPR036259 MFS transporter superfamily PF553_09045 IPR030048 Survival protein SurE PF553_09045 IPR002828 Survival protein SurE-like phosphatase/nucleotidase PF553_09045 IPR036523 SurE-like phosphatase/nucleotidase superfamily PF553_09055 IPR033655 RelA, TGS domain PF553_09055 IPR012676 TGS-like PF553_09055 IPR004095 TGS PF553_09055 IPR007685 RelA/SpoT PF553_09055 IPR002912 ACT domain PF553_09055 IPR012675 Beta-grasp domain superfamily PF553_09055 IPR003607 HD/PDEase domain PF553_09055 IPR004811 RelA/SpoT family PF553_09060 IPR006261 dNTP triphosphohydrolase PF553_09060 IPR023023 dNTP triphosphohydrolase, type 2 PF553_09060 IPR003607 HD/PDEase domain PF553_09060 IPR006674 HD domain PF553_09060 IPR026875 Phosphohydrolase-associated domain PF553_09080 IPR003593 AAA+ ATPase domain PF553_09080 IPR003840 DNA helicase PF553_09080 IPR010285 DNA helicase Pif1-like PF553_09080 IPR027417 P-loop containing nucleoside triphosphate hydrolase PF553_09110 IPR002347 Short-chain dehydrogenase/reductase SDR PF553_09110 IPR020904 Short-chain dehydrogenase/reductase, conserved site PF553_09110 IPR036291 NAD(P)-binding domain superfamily PF553_09110 IPR011284 3-oxoacyl-(acyl-carrier-protein) reductase PF553_09115 IPR020846 Major facilitator superfamily domain PF553_09115 IPR005828 Major facilitator, sugar transporter-like PF553_09115 IPR036259 MFS transporter superfamily PF553_09115 IPR004736 MFS transporter, metabolite:H symporter PF553_09115 IPR005829 Sugar transporter, conserved site PF553_09115 IPR011701 Major facilitator superfamily PF553_09120 IPR005318 Outer membrane porin, bacterial PF553_09120 IPR023614 Porin domain superfamily PF553_09125 IPR009057 Homeobox-like domain superfamily PF553_09135 IPR024463 Transposase TnpC, homeodomain PF553_09135 IPR004291 Transposase, IS66 PF553_09135 IPR024474 Zinc-finger binding domain of transposase IS66 PF553_09135 IPR039552 Transposase IS66, C-terminal PF553_09140 IPR036390 Winged helix DNA-binding domain superfamily PF553_09140 IPR005119 LysR, substrate-binding PF553_09140 IPR000847 Transcription regulator HTH, LysR PF553_09140 IPR036388 Winged helix-like DNA-binding domain superfamily PF553_09150 IPR029016 GAF-like domain superfamily PF553_09150 IPR014757 Transcription regulator IclR, C-terminal PF553_09150 IPR036390 Winged helix DNA-binding domain superfamily PF553_09150 IPR036388 Winged helix-like DNA-binding domain superfamily PF553_09150 IPR005471 Transcription regulator IclR, N-terminal PF553_09185 IPR016148 Pili assembly chaperone, C-terminal PF553_09185 IPR018046 Pili assembly chaperone, conserved site PF553_09185 IPR016147 Pili assembly chaperone, N-terminal PF553_09185 IPR036316 Pili assembly chaperone, C-terminal domain superfamily PF553_09185 IPR008962 PapD-like superfamily PF553_09185 IPR013783 Immunoglobulin-like fold PF553_09185 IPR001829 Pili assembly chaperone, bacterial PF553_09190 IPR018030 Fimbrial membrane usher, conserved site PF553_09190 IPR042186 Outer membrane usher protein FimD, plug domain PF553_09190 IPR025949 PapC-like, C-terminal domain PF553_09190 IPR025885 PapC, N-terminal domain PF553_09190 IPR037224 PapC, N-terminal domain superfamily PF553_09190 IPR000015 Outer membrane usher protein PF553_09195 IPR000259 Fimbrial-type adhesion domain PF553_09195 IPR036937 Fimbrial-type adhesion domain superfamily PF553_09195 IPR008966 Adhesion domain superfamily PF553_09205 IPR002328 Alcohol dehydrogenase, zinc-type, conserved site PF553_09205 IPR020843 Polyketide synthase, enoylreductase domain PF553_09205 IPR013154 Alcohol dehydrogenase, N-terminal PF553_09205 IPR011032 GroES-like superfamily PF553_09205 IPR036291 NAD(P)-binding domain superfamily PF553_09205 IPR013149 Alcohol dehydrogenase, C-terminal PF553_09205 IPR014183 Alcohol dehydrogenase class III PF553_09215 IPR011614 Catalase core domain PF553_09215 IPR020835 Catalase superfamily PF553_09235 IPR004291 Transposase, IS66 PF553_09235 IPR039552 Transposase IS66, C-terminal PF553_09235 IPR024463 Transposase TnpC, homeodomain PF553_09235 IPR024474 Zinc-finger binding domain of transposase IS66 PF553_09245 IPR009057 Homeobox-like domain superfamily PF553_09270 IPR000180 Membrane dipeptidase, active site PF553_09270 IPR032466 Metal-dependent hydrolase PF553_09270 IPR008257 Peptidase M19 PF553_09275 IPR011843 Coenzyme PQQ biosynthesis protein E, bacteria PF553_09275 IPR017200 Coenzyme PQQ synthesis protein E PF553_09275 IPR000385 MoaA/nifB/pqqE, iron-sulphur binding, conserved site PF553_09275 IPR006638 Elp3/MiaB/NifB PF553_09275 IPR023885 4Fe4S-binding SPASM domain PF553_09275 IPR007197 Radical SAM PF553_09275 IPR013785 Aldolase-type TIM barrel PF553_09280 IPR008792 Coenzyme PQQ synthesis protein D PF553_09280 IPR041881 Coenzyme PQQ synthesis protein D superfamily PF553_09280 IPR022479 Coenzyme PQQ synthesis D, bacteria PF553_09285 IPR039068 Pyrroloquinoline-quinone synthase-like PF553_09285 IPR011845 Coenzyme PQQ biosynthesis protein C PF553_09285 IPR016084 Haem oxygenase-like, multi-helical PF553_09285 IPR004305 Thiaminase-2/PQQC PF553_09290 IPR001279 Metallo-beta-lactamase PF553_09290 IPR011842 Coenzyme PQQ biosynthesis protein B PF553_09290 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like PF553_09295 IPR011725 Coenzyme PQQ biosynthesis protein A PF553_09300 IPR003414 Polyphosphate kinase PF553_09300 IPR041108 Polyphosphate kinase, C-terminal domain 1 PF553_09300 IPR036832 Polyphosphate kinase N-terminal domain superfamily PF553_09300 IPR025198 Polyphosphate kinase N-terminal domain PF553_09300 IPR025200 Polyphosphate kinase C-terminal domain 2 PF553_09300 IPR036830 Polyphosphate kinase middle domain superfamily PF553_09300 IPR024953 Polyphosphate kinase middle domain PF553_09305 IPR004843 Calcineurin-like phosphoesterase domain, ApaH type PF553_09305 IPR029052 Metallo-dependent phosphatase-like PF553_09305 IPR006179 5'-Nucleotidase/apyrase PF553_09315 IPR036736 ACP-like superfamily PF553_09315 IPR016291 Isochorismatase PF553_09315 IPR000868 Isochorismatase-like PF553_09315 IPR009081 Phosphopantetheine binding ACP domain PF553_09315 IPR036380 Isochorismatase-like superfamily PF553_09320 IPR020904 Short-chain dehydrogenase/reductase, conserved site PF553_09320 IPR036291 NAD(P)-binding domain superfamily PF553_09320 IPR003560 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase PF553_09320 IPR002347 Short-chain dehydrogenase/reductase SDR PF553_09325 IPR005116 Transport-associated OB, type 1 PF553_09325 IPR027417 P-loop containing nucleoside triphosphate hydrolase PF553_09325 IPR004606 Molybdenum-pterin binding PF553_09325 IPR011868 Molybdate ABC transporter, ATP-binding protein PF553_09325 IPR015852 ABC transporter, molybdenum import, ModC PF553_09325 IPR017871 ABC transporter, conserved site PF553_09325 IPR003439 ABC transporter-like PF553_09325 IPR008995 Molybdate/tungstate binding, C-terminal PF553_09325 IPR003593 AAA+ ATPase domain PF553_09330 IPR000515 ABC transporter type 1, transmembrane domain MetI-like PF553_09330 IPR035906 MetI-like superfamily PF553_09330 IPR011867 Molybdate ABC transporter, permease protein PF553_09335 IPR005950 Molybdate ABC transporter, substrate-binding protein PF553_09340 IPR004606 Molybdenum-pterin binding PF553_09340 IPR005116 Transport-associated OB, type 1 PF553_09340 IPR008995 Molybdate/tungstate binding, C-terminal PF553_09340 IPR000847 Transcription regulator HTH, LysR PF553_09340 IPR036388 Winged helix-like DNA-binding domain superfamily PF553_09340 IPR036390 Winged helix DNA-binding domain superfamily PF553_09340 IPR003725 Molybdenum-binding protein ModE, N-terminal PF553_09340 IPR016462 Molybdate-dependent transcriptional regulator ModE PF553_09345 IPR015881 Aromatic-ring-hydroxylating dioxygenase, 2Fe-2S-binding site PF553_09345 IPR017638 Anthranilate 1,2-dioxygenase, large subunit PF553_09345 IPR001663 Aromatic-ring-hydroxylating dioxygenase, alpha subunit PF553_09345 IPR015879 Aromatic-ring-hydroxylating dioxygenase, alpha subunit, C-terminal domain PF553_09345 IPR036922 Rieske [2Fe-2S] iron-sulphur domain superfamily PF553_09345 IPR017941 Rieske [2Fe-2S] iron-sulphur domain PF553_09350 IPR032710 NTF2-like domain superfamily PF553_09350 IPR017640 Anthranilate 1,2-dioxygenase, small subunit PF553_09350 IPR000391 Ring-hydroxylating dioxygenase beta subunit PF553_09355 IPR036010 2Fe-2S ferredoxin-like superfamily PF553_09355 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain PF553_09355 IPR006058 2Fe-2S ferredoxin, iron-sulphur binding site PF553_09355 IPR012675 Beta-grasp domain superfamily PF553_09355 IPR008333 Flavoprotein pyridine nucleotide cytochrome reductase-like, FAD-binding domain PF553_09355 IPR017927 FAD-binding domain, ferredoxin reductase-type PF553_09355 IPR039261 Ferredoxin-NADP reductase (FNR), nucleotide-binding domain PF553_09355 IPR001433 Oxidoreductase FAD/NAD(P)-binding PF553_09355 IPR017938 Riboflavin synthase-like beta-barrel PF553_09360 IPR037923 Transcription regulator HTH-like PF553_09360 IPR018062 HTH domain AraC-type, conserved site PF553_09360 IPR018060 DNA binding HTH domain, AraC-type PF553_09360 IPR009057 Homeobox-like domain superfamily PF553_09360 IPR035418 Transcription regulator HTH, AraC- type, ligand binding domain-like PF553_09370 IPR002563 Flavin reductase like domain PF553_09370 IPR012349 FMN-binding split barrel PF553_09370 IPR036388 Winged helix-like DNA-binding domain superfamily PF553_09370 IPR036390 Winged helix DNA-binding domain superfamily PF553_09380 IPR036291 NAD(P)-binding domain superfamily PF553_09380 IPR020904 Short-chain dehydrogenase/reductase, conserved site PF553_09380 IPR002347 Short-chain dehydrogenase/reductase SDR PF553_09385 IPR029058 Alpha/Beta hydrolase fold PF553_09385 IPR002925 Dienelactone hydrolase PF553_09390 IPR011701 Major facilitator superfamily PF553_09390 IPR005829 Sugar transporter, conserved site PF553_09390 IPR036259 MFS transporter superfamily PF553_09390 IPR004746 Major facilitator superfamily, aromatic acid:H+ symporter family PF553_09390 IPR020846 Major facilitator superfamily domain PF553_09395 IPR018060 DNA binding HTH domain, AraC-type PF553_09395 IPR009057 Homeobox-like domain superfamily PF553_09395 IPR009594 Transcription regulator HTH, AraC, N-terminal PF553_09400 IPR002347 Short-chain dehydrogenase/reductase SDR PF553_09400 IPR036291 NAD(P)-binding domain superfamily PF553_09400 IPR011294 3-hydroxybutyrate dehydrogenase PF553_09400 IPR020904 Short-chain dehydrogenase/reductase, conserved site PF553_09405 IPR003474 Gluconate transporter PF553_09415 IPR009057 Homeobox-like domain superfamily PF553_09415 IPR001647 DNA-binding HTH domain, TetR-type PF553_09415 IPR036271 Tetracyclin repressor-like, C-terminal domain superfamily PF553_09435 IPR005119 LysR, substrate-binding PF553_09435 IPR000847 Transcription regulator HTH, LysR PF553_09435 IPR036388 Winged helix-like DNA-binding domain superfamily PF553_09435 IPR036390 Winged helix DNA-binding domain superfamily PF553_09440 IPR012792 3-oxoacid CoA-transferase, subunit A PF553_09440 IPR004165 Coenzyme A transferase family I PF553_09440 IPR004163 Coenzyme A transferase binding site PF553_09440 IPR037171 NagB/RpiA transferase-like PF553_09445 IPR037171 NagB/RpiA transferase-like PF553_09445 IPR004165 Coenzyme A transferase family I PF553_09445 IPR012791 3-oxoacid CoA-transferase, subunit B PF553_09445 IPR004164 Coenzyme A transferase active site PF553_09450 IPR006161 Conserved hypothetical protein CHP00336 PF553_09450 IPR006160 Short chain fatty acid transporter AtoE PF553_09455 IPR002155 Thiolase PF553_09455 IPR016039 Thiolase-like PF553_09455 IPR020615 Thiolase, acyl-enzyme intermediate active site PF553_09455 IPR020610 Thiolase, active site PF553_09455 IPR020617 Thiolase, C-terminal PF553_09455 IPR020616 Thiolase, N-terminal PF553_09455 IPR020613 Thiolase, conserved site PF553_09460 IPR005119 LysR, substrate-binding PF553_09460 IPR036390 Winged helix DNA-binding domain superfamily PF553_09460 IPR036388 Winged helix-like DNA-binding domain superfamily PF553_09460 IPR000847 Transcription regulator HTH, LysR PF553_09465 IPR036390 Winged helix DNA-binding domain superfamily PF553_09465 IPR036388 Winged helix-like DNA-binding domain superfamily PF553_09465 IPR000847 Transcription regulator HTH, LysR PF553_09465 IPR005119 LysR, substrate-binding PF553_09480 IPR008948 L-Aspartase-like PF553_09480 IPR022761 Fumarate lyase, N-terminal PF553_09480 IPR000362 Fumarate lyase family PF553_09480 IPR024083 Fumarase/histidase, N-terminal PF553_09480 IPR018951 Fumarase C, C-terminal PF553_09480 IPR004708 Aspartate ammonia-lyase PF553_09480 IPR020557 Fumarate lyase, conserved site PF553_09485 IPR010105 TonB-dependent siderophore receptor PF553_09485 IPR010917 TonB-dependent receptor, conserved site PF553_09485 IPR036942 TonB-dependent receptor-like, beta-barrel domain superfamily PF553_09485 IPR010916 TonB box, conserved site PF553_09485 IPR039423 TonB-dependent receptor-like PF553_09485 IPR037066 TonB-dependent receptor, plug domain superfamily PF553_09485 IPR012910 TonB-dependent receptor, plug domain PF553_09485 IPR030149 TonB-dependent siderophore receptor FcuA/FatA PF553_09485 IPR000531 TonB-dependent receptor-like, beta-barrel PF553_09490 IPR020846 Major facilitator superfamily domain PF553_09490 IPR005828 Major facilitator, sugar transporter-like PF553_09490 IPR036259 MFS transporter superfamily PF553_09490 IPR004736 MFS transporter, metabolite:H symporter PF553_09490 IPR005829 Sugar transporter, conserved site PF553_09505 IPR003593 AAA+ ATPase domain PF553_09505 IPR003439 ABC transporter-like PF553_09505 IPR017871 ABC transporter, conserved site PF553_09505 IPR015859 ABC transporter, taurine import, TauD PF553_09505 IPR027417 P-loop containing nucleoside triphosphate hydrolase PF553_09510 IPR005889 Nitrate transport permease PF553_09510 IPR000515 ABC transporter type 1, transmembrane domain MetI-like PF553_09510 IPR035906 MetI-like superfamily PF553_09515 IPR007210 ABC-type glycine betaine transport system, substrate-binding domain PF553_09515 IPR010068 Taurine ABC transporter, substrate-binding protein TauA PF553_09515 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF PF553_09530 IPR028978 Chorismate pyruvate-lyase/UbiC transcription regulator-associated domain superfamily PF553_09530 IPR000524 Transcription regulator HTH, GntR PF553_09530 IPR036388 Winged helix-like DNA-binding domain superfamily PF553_09530 IPR011663 UbiC transcription regulator-associated PF553_09530 IPR036390 Winged helix DNA-binding domain superfamily PF553_09535 IPR003370 Chromate transporter PF553_09535 IPR014047 Chromate transporter, long chain PF553_09540 IPR029039 Flavoprotein-like superfamily PF553_09540 IPR023048 NADH-azoreductase, FMN-dependent PF553_09540 IPR003680 Flavodoxin-like fold PF553_09545 IPR002577 Helix-turn-helix, HxlR type PF553_09545 IPR036388 Winged helix-like DNA-binding domain superfamily PF553_09545 IPR036390 Winged helix DNA-binding domain superfamily PF553_09550 IPR020449 Transcription regulator HTH, AraC- type PF553_09550 IPR011256 Regulatory factor, effector binding domain superfamily PF553_09550 IPR029442 GyrI-like small molecule binding domain PF553_09550 IPR018060 DNA binding HTH domain, AraC-type PF553_09550 IPR009057 Homeobox-like domain superfamily PF553_09550 IPR010499 Bacterial transcription activator, effector binding PF553_09550 IPR018062 HTH domain AraC-type, conserved site PF553_09565 IPR002781 Transmembrane protein TauE-like PF553_09580 IPR005939 Beta-lactamase hydrolase-like PF553_09580 IPR001279 Metallo-beta-lactamase PF553_09580 IPR029021 Protein-tyrosine phosphatase-like PF553_09580 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like PF553_09585 IPR025944 Sigma-54 interaction domain, conserved site PF553_09585 IPR010114 DNA-binding transcriptional regulator NtrC PF553_09585 IPR025943 Sigma-54 interaction domain, ATP-binding site 2 PF553_09585 IPR003593 AAA+ ATPase domain PF553_09585 IPR001789 Signal transduction response regulator, receiver domain PF553_09585 IPR009057 Homeobox-like domain superfamily PF553_09585 IPR002078 RNA polymerase sigma factor 54 interaction domain PF553_09585 IPR011006 CheY-like superfamily PF553_09585 IPR002197 DNA binding HTH domain, Fis-type PF553_09585 IPR027417 P-loop containing nucleoside triphosphate hydrolase PF553_09590 IPR021134 Bestrophin/UPF0187 PF553_09595 IPR036291 NAD(P)-binding domain superfamily PF553_09595 IPR011032 GroES-like superfamily PF553_09595 IPR013149 Alcohol dehydrogenase, C-terminal PF553_09595 IPR002328 Alcohol dehydrogenase, zinc-type, conserved site PF553_09595 IPR013154 Alcohol dehydrogenase, N-terminal PF553_09595 IPR020843 Polyketide synthase, enoylreductase domain PF553_09600 IPR014007 Acetoin reductase PF553_09600 IPR002347 Short-chain dehydrogenase/reductase SDR PF553_09600 IPR020904 Short-chain dehydrogenase/reductase, conserved site PF553_09600 IPR036291 NAD(P)-binding domain superfamily PF553_09605 IPR012999 Pyridine nucleotide-disulphide oxidoreductase, class I, active site PF553_09605 IPR006258 Dihydrolipoamide dehydrogenase PF553_09605 IPR016156 FAD/NAD-linked reductase, dimerisation domain superfamily PF553_09605 IPR023753 FAD/NAD(P)-binding domain PF553_09605 IPR036188 FAD/NAD(P)-binding domain superfamily PF553_09605 IPR001100 Pyridine nucleotide-disulphide oxidoreductase, class I PF553_09605 IPR004099 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain PF553_09610 IPR036625 E3-binding domain superfamily PF553_09610 IPR011053 Single hybrid motif PF553_09610 IPR004167 Peripheral subunit-binding domain PF553_09610 IPR006257 Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex PF553_09610 IPR023213 Chloramphenicol acetyltransferase-like domain superfamily PF553_09610 IPR001078 2-oxoacid dehydrogenase acyltransferase, catalytic domain PF553_09610 IPR003016 2-oxo acid dehydrogenase, lipoyl-binding site PF553_09610 IPR000089 Biotin/lipoyl attachment PF553_09615 IPR005475 Transketolase-like, pyrimidine-binding domain PF553_09615 IPR033248 Transketolase, C-terminal domain PF553_09615 IPR029061 Thiamin diphosphate-binding fold PF553_09615 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II PF553_09620 IPR001017 Dehydrogenase, E1 component PF553_09620 IPR029061 Thiamin diphosphate-binding fold PF553_09625 IPR003698 Lipoyl synthase PF553_09625 IPR013785 Aldolase-type TIM barrel PF553_09625 IPR006638 Elp3/MiaB/NifB PF553_09625 IPR007197 Radical SAM PF553_09640 IPR000160 GGDEF domain PF553_09640 IPR029787 Nucleotide cyclase PF553_09640 IPR000014 PAS domain PF553_09640 IPR000700 PAS-associated, C-terminal PF553_09640 IPR013656 PAS fold-4 PF553_09640 IPR035965 PAS domain superfamily PF553_09645 IPR039552 Transposase IS66, C-terminal PF553_09645 IPR004291 Transposase, IS66 PF553_09645 IPR024463 Transposase TnpC, homeodomain PF553_09645 IPR024474 Zinc-finger binding domain of transposase IS66 PF553_09655 IPR009057 Homeobox-like domain superfamily PF553_09660 IPR035904 Chorismate synthase AroC superfamily PF553_09660 IPR000453 Chorismate synthase PF553_09660 IPR020541 Chorismate synthase, conserved site PF553_09665 IPR017127 Ribosomal protein L3-specific, glutamine-N5-methyltransferase PF553_09665 IPR002052 DNA methylase, N-6 adenine-specific, conserved site PF553_09665 IPR007848 Methyltransferase small domain PF553_09665 IPR004556 Methyltransferase HemK-like PF553_09665 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase PF553_09670 IPR006653 Tryptophan synthase, beta chain, conserved site PF553_09670 IPR006654 Tryptophan synthase, beta chain PF553_09670 IPR023026 Tryptophan synthase beta chain/beta chain-like PF553_09670 IPR036052 Tryptophan synthase beta subunit-like PLP-dependent enzyme PF553_09670 IPR001926 Pyridoxal-phosphate dependent enzyme PF553_09680 IPR003593 AAA+ ATPase domain PF553_09680 IPR041569 AAA ATPase, AAA+ lid domain PF553_09680 IPR037219 Peptidase M41-like PF553_09680 IPR000642 Peptidase M41 PF553_09680 IPR027417 P-loop containing nucleoside triphosphate hydrolase PF553_09680 IPR005936 Peptidase, FtsH PF553_09680 IPR003959 ATPase, AAA-type, core PF553_09690 IPR027354 YcgL domain PF553_09690 IPR038068 YcgL-like superfamily PF553_09710 IPR010997 HRDC-like superfamily PF553_09710 IPR002121 HRDC domain PF553_09710 IPR002562 3'-5' exonuclease domain PF553_09710 IPR006292 Ribonuclease D PF553_09710 IPR036397 Ribonuclease H superfamily PF553_09710 IPR012337 Ribonuclease H-like superfamily PF553_09715 IPR015967 Recombination protein RecR, conserved site PF553_09715 IPR006171 TOPRIM domain PF553_09715 IPR034137 RecR, TOPRIM domain PF553_09715 IPR023628 Recombination protein RecR, C4-type zinc finger PF553_09715 IPR023627 Recombination protein RecR PF553_09715 IPR000093 DNA recombination protein RecR PF553_09720 IPR036894 Nucleoid-associated protein YbaB-like domain superfamily PF553_09720 IPR004401 Nucleoid-associated protein YbaB/EbfC family PF553_09730 IPR006234 O-succinylhomoserine sulfhydrylase PF553_09730 IPR015421 Pyridoxal phosphate-dependent transferase, major domain PF553_09730 IPR000277 Cys/Met metabolism, pyridoxal phosphate-dependent enzyme PF553_09730 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 PF553_09730 IPR015424 Pyridoxal phosphate-dependent transferase PF553_09735 IPR010125 Poly(R)-hydroxyalkanoic acid synthase, class III, PhaC subunit PF553_09735 IPR000073 Alpha/beta hydrolase fold-1 PF553_09735 IPR029058 Alpha/Beta hydrolase fold PF553_09740 IPR013216 Methyltransferase type 11 PF553_09740 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase PF553_09770 IPR001310 Histidine triad (HIT) protein PF553_09770 IPR019808 Histidine triad, conserved site PF553_09770 IPR011146 HIT-like domain PF553_09770 IPR036265 HIT-like superfamily PF553_09770 IPR039384 HINT family PF553_09780 IPR024463 Transposase TnpC, homeodomain PF553_09780 IPR004291 Transposase, IS66 PF553_09780 IPR039552 Transposase IS66, C-terminal PF553_09780 IPR024474 Zinc-finger binding domain of transposase IS66 PF553_09790 IPR009057 Homeobox-like domain superfamily PF553_09810 IPR000412 ABC-2 transporter PF553_09815 IPR000412 ABC-2 transporter PF553_09820 IPR027417 P-loop containing nucleoside triphosphate hydrolase PF553_09820 IPR003593 AAA+ ATPase domain PF553_09820 IPR003439 ABC transporter-like PF553_09820 IPR017871 ABC transporter, conserved site PF553_09825 IPR032317 RND efflux pump, membrane fusion protein, barrel-sandwich domain PF553_09835 IPR003835 Glycosyl transferase, family 19 PF553_09840 IPR010105 TonB-dependent siderophore receptor PF553_09840 IPR010917 TonB-dependent receptor, conserved site PF553_09840 IPR036942 TonB-dependent receptor-like, beta-barrel domain superfamily PF553_09840 IPR037066 TonB-dependent receptor, plug domain superfamily PF553_09840 IPR012910 TonB-dependent receptor, plug domain PF553_09840 IPR010916 TonB box, conserved site PF553_09840 IPR039423 TonB-dependent receptor-like PF553_09840 IPR000531 TonB-dependent receptor-like, beta-barrel PF553_09860 IPR002781 Transmembrane protein TauE-like PF553_09865 IPR006219 DHAP synthase, class 1 PF553_09865 IPR006218 DAHP synthetase I/KDSA PF553_09865 IPR013785 Aldolase-type TIM barrel PF553_09870 IPR003805 Adenosylcobinamide-GDP ribazoletransferase PF553_09885 IPR023195 Nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase, N-terminal PF553_09885 IPR003200 Nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase-like PF553_09885 IPR017846 Nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase, prokaryotic PF553_09885 IPR036087 Nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase-like superfamily PF553_09890 IPR003203 Cobinamide kinase/cobinamide phosphate guanyltransferase PF553_09890 IPR027417 P-loop containing nucleoside triphosphate hydrolase PF553_09900 IPR010976 Beta-phosphoglucomutase hydrolase PF553_09900 IPR023198 Phosphoglycolate phosphatase-like, domain 2 PF553_09900 IPR023214 HAD superfamily PF553_09900 IPR041492 Haloacid dehalogenase-like hydrolase PF553_09900 IPR006439 HAD hydrolase, subfamily IA PF553_09900 IPR036412 HAD-like superfamily PF553_09925 IPR010916 TonB box, conserved site PF553_09925 IPR000531 TonB-dependent receptor-like, beta-barrel PF553_09925 IPR037066 TonB-dependent receptor, plug domain superfamily PF553_09925 IPR039426 Vitamin B12 transporter BtuB-like PF553_09925 IPR012910 TonB-dependent receptor, plug domain PF553_09925 IPR010105 TonB-dependent siderophore receptor PF553_09925 IPR010917 TonB-dependent receptor, conserved site PF553_09925 IPR036942 TonB-dependent receptor-like, beta-barrel domain superfamily PF553_09930 IPR036704 Ribonuclease E inhibitor RraA/RraA-like superfamily PF553_09930 IPR005493 Ribonuclease E inhibitor RraA/RraA-like protein PF553_09930 IPR014165 4-carboxy-4-hydroxy-2-oxoadipate aldolase/oxaloacetate decarboxylase PF553_09940 IPR007310 Aerobactin siderophore biosynthesis, IucA/IucC, N-terminal PF553_09940 IPR022770 Ferric iron reductase FhuF domain PF553_09940 IPR037455 Aerobactin siderophore biosynthesis, IucA/IucC-like PF553_09945 IPR037455 Aerobactin siderophore biosynthesis, IucA/IucC-like PF553_09945 IPR022770 Ferric iron reductase FhuF domain PF553_09945 IPR007310 Aerobactin siderophore biosynthesis, IucA/IucC, N-terminal PF553_09950 IPR036259 MFS transporter superfamily PF553_09950 IPR011701 Major facilitator superfamily PF553_09950 IPR004638 Drug resistance transporter EmrB-like PF553_09950 IPR020846 Major facilitator superfamily domain PF553_09955 IPR036188 FAD/NAD(P)-binding domain superfamily PF553_09955 IPR031043 Putative histamine N-monooxygenase PF553_09955 IPR025700 L-lysine 6-monooxygenase/L-ornithine 5-monooxygenase PF553_09960 IPR022770 Ferric iron reductase FhuF domain PF553_09960 IPR007310 Aerobactin siderophore biosynthesis, IucA/IucC, N-terminal PF553_09960 IPR037455 Aerobactin siderophore biosynthesis, IucA/IucC-like PF553_09965 IPR007214 YbaK/aminoacyl-tRNA synthetase-associated domain PF553_09965 IPR004369 Prolyl-tRNA editing protein, YbaK/EbsC PF553_09965 IPR036754 YbaK/aminoacyl-tRNA synthetase-associated domain superfamily PF553_09975 IPR011009 Protein kinase-like domain superfamily PF553_09975 IPR004147 UbiB domain PF553_09980 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal PF553_09980 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily PF553_09980 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal PF553_09980 IPR006091 Acyl-CoA oxidase/dehydrogenase, central domain PF553_09980 IPR036250 Acyl-CoA dehydrogenase-like, C-terminal PF553_09980 IPR037069 Acyl-CoA dehydrogenase/oxidase, N-terminal domain superfamily PF553_09980 IPR006089 Acyl-CoA dehydrogenase, conserved site PF553_09985 IPR036250 Acyl-CoA dehydrogenase-like, C-terminal PF553_09985 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal PF553_09985 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal PF553_09985 IPR037069 Acyl-CoA dehydrogenase/oxidase, N-terminal domain superfamily PF553_09985 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily PF553_09985 IPR006091 Acyl-CoA oxidase/dehydrogenase, central domain PF553_09985 IPR006089 Acyl-CoA dehydrogenase, conserved site PF553_09990 IPR033885 Alkane/xylene monooxygenase PF553_09990 IPR005804 Fatty acid desaturase domain PF553_09995 IPR018062 HTH domain AraC-type, conserved site PF553_09995 IPR032783 AraC-type transcription regulator, ligand-binding domain PF553_09995 IPR009057 Homeobox-like domain superfamily PF553_09995 IPR018060 DNA binding HTH domain, AraC-type PF553_09995 IPR014710 RmlC-like jelly roll fold PF553_09995 IPR011051 RmlC-like cupin domain superfamily PF553_09995 IPR020449 Transcription regulator HTH, AraC- type PF553_10000 IPR000297 Peptidyl-prolyl cis-trans isomerase, PpiC-type PF553_10000 IPR023058 Peptidyl-prolyl cis-trans isomerase, PpiC-type, conserved site PF553_10000 IPR023034 Peptidyl-prolyl isomerase SurA PF553_10000 IPR015391 SurA N-terminal PF553_10000 IPR027304 Trigger factor/SurA domain superfamily PF553_10005 IPR000119 Histone-like DNA-binding protein PF553_10005 IPR020816 Histone-like DNA-binding protein, conserved site PF553_10005 IPR010992 Integration host factor (IHF)-like DNA-binding domain superfamily PF553_10020 IPR036390 Winged helix DNA-binding domain superfamily PF553_10020 IPR036388 Winged helix-like DNA-binding domain superfamily PF553_10020 IPR000944 Transcription regulator Rrf2-type PF553_10020 IPR010242 Transcription factor HTH, IscR PF553_10020 IPR030489 Transcription regulator Rrf2-type, conserved site PF553_10025 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 PF553_10025 IPR015421 Pyridoxal phosphate-dependent transferase, major domain PF553_10025 IPR015424 Pyridoxal phosphate-dependent transferase PF553_10025 IPR016454 Cysteine desulfurase PF553_10025 IPR010240 Cysteine desulfurase IscS PF553_10025 IPR020578 Aminotransferase class-V, pyridoxal-phosphate binding site PF553_10025 IPR000192 Aminotransferase class V domain PF553_10030 IPR002871 NIF system FeS cluster assembly, NifU, N-terminal PF553_10030 IPR011339 ISC system FeS cluster assembly, IscU scaffold PF553_10035 IPR017870 FeS cluster insertion, C-terminal, conserved site PF553_10035 IPR016092 FeS cluster insertion protein PF553_10035 IPR035903 HesB-like domain superfamily PF553_10035 IPR011302 Iron-binding protein IscA, proteobacteria PF553_10035 IPR000361 FeS cluster biogenesis PF553_10040 IPR001623 DnaJ domain PF553_10040 IPR036869 Chaperone J-domain superfamily PF553_10040 IPR036386 HscB, C-terminal domain superfamily PF553_10040 IPR004640 Co-chaperone Hsc20 PF553_10040 IPR009073 Co-chaperone HscB, C-terminal oligomerisation domain PF553_10045 IPR018181 Heat shock protein 70, conserved site PF553_10045 IPR042039 HscA chaperone, nucleotide-binding domain PF553_10045 IPR029048 Heat shock protein 70kD, C-terminal domain superfamily PF553_10045 IPR029047 Heat shock protein 70kD, peptide-binding domain superfamily PF553_10045 IPR010236 ISC system FeS cluster assembly, HscA chaperone PF553_10045 IPR013126 Heat shock protein 70 family PF553_10050 IPR036010 2Fe-2S ferredoxin-like superfamily PF553_10050 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain PF553_10050 IPR001055 Adrenodoxin PF553_10050 IPR018298 Adrenodoxin, iron-sulphur binding site PF553_10050 IPR012675 Beta-grasp domain superfamily PF553_10050 IPR011536 Ferredoxin 2Fe-2S type, proteobacteria PF553_10055 IPR029787 Nucleotide cyclase PF553_10055 IPR001054 Adenylyl cyclase class-3/4/guanylyl cyclase PF553_10065 IPR037235 TRCF-like, C-terminal domain PF553_10065 IPR036101 CarD-like/TRCF domain superfamily PF553_10065 IPR003711 CarD-like/TRCF domain PF553_10065 IPR011545 DEAD/DEAH box helicase domain PF553_10065 IPR014001 Helicase superfamily 1/2, ATP-binding domain PF553_10065 IPR001650 Helicase, C-terminal PF553_10065 IPR004576 Transcription-repair coupling factor PF553_10065 IPR027417 P-loop containing nucleoside triphosphate hydrolase PF553_10065 IPR005118 Transcription-repair-coupling factor, C-terminal domain PF553_10065 IPR041471 UvrB, interaction domain PF553_10085 IPR036704 Ribonuclease E inhibitor RraA/RraA-like superfamily PF553_10085 IPR005493 Ribonuclease E inhibitor RraA/RraA-like protein PF553_10085 IPR010203 Regulator of ribonuclease activity A PF553_10090 IPR036291 NAD(P)-binding domain superfamily PF553_10090 IPR016040 NAD(P)-binding domain PF553_10090 IPR000534 Semialdehyde dehydrogenase, NAD-binding PF553_10095 IPR036510 Ribosomal protein S20 superfamily PF553_10095 IPR002583 Ribosomal protein S20 PF553_10105 IPR006240 3'(2'),5'-bisphosphate nucleotidase CysQ PF553_10105 IPR020583 Inositol monophosphatase, metal-binding site PF553_10105 IPR000760 Inositol monophosphatase-like PF553_10105 IPR020550 Inositol monophosphatase, conserved site PF553_10120 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal PF553_10120 IPR027417 P-loop containing nucleoside triphosphate hydrolase PF553_10120 IPR017871 ABC transporter, conserved site PF553_10120 IPR003593 AAA+ ATPase domain PF553_10120 IPR003439 ABC transporter-like PF553_10125 IPR000515 ABC transporter type 1, transmembrane domain MetI-like PF553_10125 IPR035906 MetI-like superfamily PF553_10130 IPR000515 ABC transporter type 1, transmembrane domain MetI-like PF553_10130 IPR035906 MetI-like superfamily PF553_10135 IPR001567 Peptidase M3A/M3B catalytic domain PF553_10135 IPR024077 Neurolysin/Thimet oligopeptidase, domain 2 PF553_10165 IPR002898 MotA/TolQ/ExbB proton channel PF553_10170 IPR003400 Biopolymer transport protein ExbD/TolR PF553_10175 IPR003400 Biopolymer transport protein ExbD/TolR PF553_10185 IPR011076 Malate synthase-like superfamily PF553_10185 IPR023310 Malate synthase G, beta sub-domain PF553_10185 IPR001465 Malate synthase PF553_10185 IPR006253 Malate synthase G PF553_10190 IPR005654 ATPase, AFG1-like PF553_10190 IPR027417 P-loop containing nucleoside triphosphate hydrolase PF553_10190 IPR030870 Cell division protein ZapE PF553_10200 IPR036188 FAD/NAD(P)-binding domain superfamily PF553_10200 IPR020946 Flavin monooxygenase-like PF553_10210 IPR001754 Orotidine 5'-phosphate decarboxylase domain PF553_10210 IPR018089 Orotidine 5'-phosphate decarboxylase, active site PF553_10210 IPR011060 Ribulose-phosphate binding barrel PF553_10210 IPR013785 Aldolase-type TIM barrel PF553_10210 IPR014732 Orotidine 5'-phosphate decarboxylase PF553_10220 IPR000119 Histone-like DNA-binding protein PF553_10220 IPR020816 Histone-like DNA-binding protein, conserved site PF553_10220 IPR010992 Integration host factor (IHF)-like DNA-binding domain superfamily PF553_10220 IPR005685 Integration host factor, beta subunit PF553_10225 IPR012340 Nucleic acid-binding, OB-fold PF553_10225 IPR000110 Ribosomal protein S1 PF553_10225 IPR022967 RNA-binding domain, S1 PF553_10225 IPR003029 S1 domain PF553_10230 IPR027417 P-loop containing nucleoside triphosphate hydrolase PF553_10230 IPR011994 Cytidylate kinase domain PF553_10230 IPR003136 Cytidylate kinase PF553_10240 IPR016192 APOBEC/CMP deaminase, zinc-binding PF553_10240 IPR002125 Cytidine and deoxycytidylate deaminase domain PF553_10240 IPR016193 Cytidine deaminase-like PF553_10240 IPR028883 tRNA-specific adenosine deaminase PF553_10250 IPR002043 Uracil-DNA glycosylase family 1 PF553_10250 IPR018085 Uracil-DNA glycosylase, active site PF553_10250 IPR005122 Uracil-DNA glycosylase-like PF553_10250 IPR036895 Uracil-DNA glycosylase-like domain superfamily PF553_10260 IPR005628 General secretion pathway protein K PF553_10260 IPR038072 GspK, central domain superfamily PF553_10265 IPR012902 Prokaryotic N-terminal methylation site PF553_10265 IPR010055 Type II secretion system protein J PF553_10270 IPR010052 Type II secretion system protein I PF553_10270 IPR003413 Type II secretion system protein I domain PF553_10270 IPR012902 Prokaryotic N-terminal methylation site PF553_10285 IPR018228 Deoxyribonuclease, TatD-related, conserved site PF553_10285 IPR015991 Uncharacterised hydrolase TatD-type PF553_10285 IPR032466 Metal-dependent hydrolase PF553_10285 IPR001130 TatD family PF553_10295 IPR004622 DNA polymerase III, delta prime subunit PF553_10295 IPR015199 DNA polymerase III, delta subunit, C-terminal PF553_10295 IPR027417 P-loop containing nucleoside triphosphate hydrolase PF553_10300 IPR029044 Nucleotide-diphospho-sugar transferases PF553_10300 IPR003329 Acylneuraminate cytidylyltransferase PF553_10300 IPR004528 3-deoxy-D-manno-octulosonate cytidylyltransferase PF553_10305 IPR003758 Tetraacyldisaccharide 4'-kinase PF553_10305 IPR027417 P-loop containing nucleoside triphosphate hydrolase PF553_10310 IPR003593 AAA+ ATPase domain PF553_10310 IPR011527 ABC transporter type 1, transmembrane domain PF553_10310 IPR036640 ABC transporter type 1, transmembrane domain superfamily PF553_10310 IPR003439 ABC transporter-like PF553_10310 IPR017871 ABC transporter, conserved site PF553_10310 IPR011917 ABC transporter, lipid A export, MsbA PF553_10310 IPR027417 P-loop containing nucleoside triphosphate hydrolase PF553_10310 IPR039421 Type I protein exporter PF553_10320 IPR002898 MotA/TolQ/ExbB proton channel PF553_10325 IPR041468 ParB/Spo0J, HTH domain PF553_10325 IPR036086 ParB/Sulfiredoxin superfamily PF553_10325 IPR004437 ParB/RepB/Spo0J partition protein PF553_10325 IPR003115 ParB/Sulfiredoxin PF553_10330 IPR025669 AAA domain PF553_10330 IPR027417 P-loop containing nucleoside triphosphate hydrolase PF553_10335 IPR003682 rRNA small subunit methyltransferase G PF553_10335 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase PF553_10340 IPR005835 Nucleotidyl transferase domain PF553_10340 IPR029044 Nucleotide-diphospho-sugar transferases PF553_10345 IPR002575 Aminoglycoside phosphotransferase PF553_10345 IPR011009 Protein kinase-like domain superfamily PF553_10350 IPR005653 Organic solvent tolerance-like, N-terminal PF553_10350 IPR020889 LPS-assembly protein LptD PF553_10350 IPR007543 LptD, C-terminal PF553_10355 IPR000297 Peptidyl-prolyl cis-trans isomerase, PpiC-type PF553_10355 IPR023034 Peptidyl-prolyl isomerase SurA PF553_10355 IPR015391 SurA N-terminal PF553_10355 IPR027304 Trigger factor/SurA domain superfamily PF553_10360 IPR013785 Aldolase-type TIM barrel PF553_10360 IPR000771 Fructose-bisphosphate aldolase, class-II PF553_10360 IPR006412 Fructose-bisphosphate aldolase, class II, Calvin cycle subtype PF553_10370 IPR036043 Phosphoglycerate kinase superfamily PF553_10370 IPR015824 Phosphoglycerate kinase, N-terminal PF553_10370 IPR015911 Phosphoglycerate kinase, conserved site PF553_10370 IPR001576 Phosphoglycerate kinase PF553_10380 IPR029001 Inosine triphosphate pyrophosphatase-like PF553_10380 IPR003697 Nucleoside triphosphate pyrophosphatase Maf-like protein PF553_10385 IPR003347 JmjC domain PF553_10385 IPR039994 JmjC domain-containing PF553_10395 IPR036390 Winged helix DNA-binding domain superfamily PF553_10395 IPR001845 HTH ArsR-type DNA-binding domain PF553_10395 IPR036388 Winged helix-like DNA-binding domain superfamily PF553_10395 IPR011991 ArsR-like helix-turn-helix domain PF553_10400 IPR001991 Sodium:dicarboxylate symporter PF553_10400 IPR036458 Sodium:dicarboxylate symporter superfamily PF553_10400 IPR023025 Serine/threonine transporter SstT PF553_10405 IPR010699 Protein of unknown function DUF1275 PF553_10410 IPR018636 Protein of unknown function DUF2058 PF553_10415 IPR027417 P-loop containing nucleoside triphosphate hydrolase PF553_10415 IPR017871 ABC transporter, conserved site PF553_10415 IPR039421 Type I protein exporter PF553_10415 IPR011527 ABC transporter type 1, transmembrane domain PF553_10415 IPR003593 AAA+ ATPase domain PF553_10415 IPR003439 ABC transporter-like PF553_10415 IPR036640 ABC transporter type 1, transmembrane domain superfamily PF553_10425 IPR032687 HTH-type transcriptional regulator AraC-type, N-terminal PF553_10425 IPR009057 Homeobox-like domain superfamily PF553_10425 IPR018060 DNA binding HTH domain, AraC-type PF553_10425 IPR020449 Transcription regulator HTH, AraC- type PF553_10430 IPR003016 2-oxo acid dehydrogenase, lipoyl-binding site PF553_10430 IPR000089 Biotin/lipoyl attachment PF553_10430 IPR002930 Glycine cleavage system H-protein PF553_10430 IPR033753 Glycine cleavage system H-protein/Simiate PF553_10430 IPR017453 Glycine cleavage system H-protein, subgroup PF553_10430 IPR011053 Single hybrid motif PF553_10435 IPR029035 DHS-like NAD/FAD-binding domain superfamily PF553_10435 IPR003000 Sirtuin family PF553_10435 IPR026591 Sirtuin, catalytic core small domain superfamily PF553_10435 IPR027546 Sirtuin, class III PF553_10435 IPR026590 Sirtuin family, catalytic core domain PF553_10440 IPR038377 Sodium/glucose symporter superfamily PF553_10440 IPR011851 Sodium/proline symporter PF553_10440 IPR001734 Sodium/solute symporter PF553_10440 IPR018212 Sodium/solute symporter, conserved site PF553_10445 IPR000485 AsnC-type HTH domain PF553_10445 IPR019885 Transcription regulator HTH, AsnC-type, conserved site PF553_10445 IPR036388 Winged helix-like DNA-binding domain superfamily PF553_10445 IPR036390 Winged helix DNA-binding domain superfamily PF553_10445 IPR011008 Dimeric alpha-beta barrel PF553_10445 IPR019887 Transcription regulator AsnC/Lrp, ligand binding domain PF553_10445 IPR011991 ArsR-like helix-turn-helix domain PF553_10445 IPR019888 Transcription regulator AsnC-type PF553_10450 IPR016163 Aldehyde dehydrogenase, C-terminal PF553_10450 IPR010985 Ribbon-helix-helix PF553_10450 IPR024089 Proline dehydrogenase PutA, domain I/II PF553_10450 IPR002872 Proline dehydrogenase domain PF553_10450 IPR016161 Aldehyde/histidinol dehydrogenase PF553_10450 IPR024090 Proline dehydrogenase PutA, domain I PF553_10450 IPR041349 Proline utilization A proline dehydrogenase N-terminal domain PF553_10450 IPR029041 FAD-linked oxidoreductase-like PF553_10450 IPR024082 Proline dehydrogenase PutA, domain II PF553_10450 IPR005933 Delta-1-pyrroline-5-carboxylate dehydrogenase 3 PF553_10450 IPR015590 Aldehyde dehydrogenase domain PF553_10450 IPR029510 Aldehyde dehydrogenase, glutamic acid active site PF553_10450 IPR016160 Aldehyde dehydrogenase, cysteine active site PF553_10450 IPR025703 Bifunctional protein PutA PF553_10450 IPR013321 Arc-type ribbon-helix-helix PF553_10450 IPR016162 Aldehyde dehydrogenase, N-terminal PF553_10455 IPR007344 GrpB/Dephospho-CoA kinase PF553_10460 IPR030390 RNA methyltransferase TrmA, active site PF553_10460 IPR010280 (Uracil-5)-methyltransferase family PF553_10460 IPR011869 tRNA/tmRNA (uracil-C(5))-methyltransferase, TrmA PF553_10460 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase PF553_10460 IPR030391 RNA methyltransferase TrmA, conserved site PF553_10470 IPR018711 Phosphodiester glycosidase PF553_10480 IPR036761 Lipid/polyisoprenoid-binding, YceI-like superfamily PF553_10480 IPR023480 Uncharacterised protein family UPF0312/YceI PF553_10480 IPR007372 Lipid/polyisoprenoid-binding, YceI-like PF553_10490 IPR005474 Transketolase, N-terminal PF553_10490 IPR033248 Transketolase, C-terminal domain PF553_10490 IPR029061 Thiamin diphosphate-binding fold PF553_10490 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II PF553_10490 IPR005475 Transketolase-like, pyrimidine-binding domain PF553_10490 IPR033247 Transketolase family PF553_10490 IPR020826 Transketolase binding site PF553_10490 IPR005478 Transketolase, bacterial-like PF553_10495 IPR022636 S-adenosylmethionine synthetase superfamily PF553_10495 IPR022628 S-adenosylmethionine synthetase, N-terminal PF553_10495 IPR022629 S-adenosylmethionine synthetase, central domain PF553_10495 IPR022630 S-adenosylmethionine synthetase, C-terminal PF553_10495 IPR022631 S-adenosylmethionine synthetase, conserved site PF553_10495 IPR002133 S-adenosylmethionine synthetase PF553_10520 IPR039552 Transposase IS66, C-terminal PF553_10520 IPR004291 Transposase, IS66 PF553_10520 IPR024463 Transposase TnpC, homeodomain PF553_10520 IPR024474 Zinc-finger binding domain of transposase IS66 PF553_10530 IPR009057 Homeobox-like domain superfamily PF553_10540 IPR012338 Beta-lactamase/transpeptidase-like PF553_10540 IPR001460 Penicillin-binding protein, transpeptidase PF553_10545 IPR016181 Acyl-CoA N-acyltransferase PF553_10545 IPR000182 GNAT domain PF553_10555 IPR036397 Ribonuclease H superfamily PF553_10555 IPR012337 Ribonuclease H-like superfamily PF553_10555 IPR020563 Crossover junction endodeoxyribonuclease RuvC, magnesium-binding site PF553_10555 IPR002176 Crossover junction endodeoxyribonuclease RuvC PF553_10560 IPR036652 YjeF N-terminal domain superfamily PF553_10560 IPR004443 YjeF N-terminal domain PF553_10560 IPR029056 Ribokinase-like PF553_10560 IPR030677 Bifunctional NAD(P)H-hydrate repair enzyme Nnr PF553_10560 IPR000631 ATP-dependent (S)-NAD(P)H-hydrate dehydratase PF553_10565 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain PF553_10565 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site PF553_10565 IPR013542 Domain of unknown function DUF1730 PF553_10565 IPR004453 Epoxyqueuosine reductase QueG PF553_10565 IPR009051 Alpha-helical ferredoxin PF553_10570 IPR013785 Aldolase-type TIM barrel PF553_10570 IPR010722 Biotin and thiamin synthesis-associated domain PF553_10570 IPR002684 Biotin synthase/Biotin biosynthesis bifunctional protein BioAB PF553_10570 IPR024177 Biotin synthase PF553_10570 IPR006638 Elp3/MiaB/NifB PF553_10570 IPR007197 Radical SAM PF553_10585 IPR008966 Adhesion domain superfamily PF553_10585 IPR036937 Fimbrial-type adhesion domain superfamily PF553_10585 IPR039458 FimA-like PF553_10590 IPR016148 Pili assembly chaperone, C-terminal PF553_10590 IPR001829 Pili assembly chaperone, bacterial PF553_10590 IPR036316 Pili assembly chaperone, C-terminal domain superfamily PF553_10590 IPR008962 PapD-like superfamily PF553_10590 IPR013783 Immunoglobulin-like fold PF553_10590 IPR018046 Pili assembly chaperone, conserved site PF553_10590 IPR016147 Pili assembly chaperone, N-terminal PF553_10595 IPR018030 Fimbrial membrane usher, conserved site PF553_10595 IPR042186 Outer membrane usher protein FimD, plug domain PF553_10595 IPR025949 PapC-like, C-terminal domain PF553_10595 IPR025885 PapC, N-terminal domain PF553_10595 IPR037224 PapC, N-terminal domain superfamily PF553_10595 IPR000015 Outer membrane usher protein PF553_10620 IPR009057 Homeobox-like domain superfamily PF553_10630 IPR039552 Transposase IS66, C-terminal PF553_10630 IPR024474 Zinc-finger binding domain of transposase IS66 PF553_10630 IPR024463 Transposase TnpC, homeodomain PF553_10630 IPR004291 Transposase, IS66 PF553_10645 IPR038271 Purine-cytosine permease superfamily PF553_10645 IPR026030 Purine-cytosine permease Fcy2/21/22 PF553_10645 IPR001248 Purine-cytosine permease PF553_10655 IPR036390 Winged helix DNA-binding domain superfamily PF553_10655 IPR036388 Winged helix-like DNA-binding domain superfamily PF553_10655 IPR000847 Transcription regulator HTH, LysR PF553_10655 IPR005119 LysR, substrate-binding PF553_10675 IPR023772 DNA-binding HTH domain, TetR-type, conserved site PF553_10675 IPR009057 Homeobox-like domain superfamily PF553_10675 IPR001647 DNA-binding HTH domain, TetR-type PF553_10685 IPR002876 Transcriptional regulator TACO1-like PF553_10685 IPR017856 Integrase-like, N-terminal PF553_10685 IPR026564 Transcriptional regulator TACO1-like, domain 3 PF553_10685 IPR029072 YebC-like PF553_10690 IPR036390 Winged helix DNA-binding domain superfamily PF553_10690 IPR019885 Transcription regulator HTH, AsnC-type, conserved site PF553_10690 IPR019887 Transcription regulator AsnC/Lrp, ligand binding domain PF553_10690 IPR019888 Transcription regulator AsnC-type PF553_10690 IPR011008 Dimeric alpha-beta barrel PF553_10690 IPR000485 AsnC-type HTH domain PF553_10690 IPR011991 ArsR-like helix-turn-helix domain PF553_10690 IPR036388 Winged helix-like DNA-binding domain superfamily PF553_10700 IPR003593 AAA+ ATPase domain PF553_10700 IPR030679 ABC-type amino acid transport system, ATPase component, HisP-type PF553_10700 IPR017871 ABC transporter, conserved site PF553_10700 IPR003439 ABC transporter-like PF553_10700 IPR027417 P-loop containing nucleoside triphosphate hydrolase PF553_10705 IPR010065 Amino acid ABC transporter, permease protein, 3-TM domain PF553_10705 IPR030205 Glutamate/aspartate transport system permease protein GltK/AatM PF553_10705 IPR000515 ABC transporter type 1, transmembrane domain MetI-like PF553_10705 IPR035906 MetI-like superfamily PF553_10710 IPR010065 Amino acid ABC transporter, permease protein, 3-TM domain PF553_10710 IPR030202 Glutamate/aspartate transport system permease protein GltJ/AatQ PF553_10710 IPR000515 ABC transporter type 1, transmembrane domain MetI-like PF553_10710 IPR035906 MetI-like superfamily PF553_10725 IPR036250 Acyl-CoA dehydrogenase-like, C-terminal PF553_10725 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily PF553_10725 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal PF553_10725 IPR013107 Acyl-CoA dehydrogenase, C-terminal domain PF553_10725 IPR037069 Acyl-CoA dehydrogenase/oxidase, N-terminal domain superfamily PF553_10735 IPR036661 Luciferase-like domain superfamily PF553_10735 IPR011251 Luciferase-like domain PF553_10735 IPR016215 Nitrilotriacetate monooxygenase component A/pristinamycin IIA synthase subunit A PF553_10740 IPR004872 Lipoprotein NlpA family PF553_10745 IPR004872 Lipoprotein NlpA family PF553_10750 IPR027417 P-loop containing nucleoside triphosphate hydrolase PF553_10750 IPR041701 Methionine import ATP-binding protein MetN, ATP-binding cassette domain PF553_10750 IPR017908 ABC transporter, methionine import, ATP-binding protein, MetN, C-terminal PF553_10750 IPR017871 ABC transporter, conserved site PF553_10750 IPR003439 ABC transporter-like PF553_10750 IPR003593 AAA+ ATPase domain PF553_10750 IPR018449 NIL domain PF553_10750 IPR026253 Methionine import ATP-binding protein MetN PF553_10755 IPR035906 MetI-like superfamily PF553_10755 IPR000515 ABC transporter type 1, transmembrane domain MetI-like PF553_10760 IPR041706 YchF, N-terminal PF553_10760 IPR004396 Ribosome-binding ATPase YchF/Obg-like ATPase 1 PF553_10760 IPR012675 Beta-grasp domain superfamily PF553_10760 IPR031167 OBG-type guanine nucleotide-binding (G) domain PF553_10760 IPR006073 GTP binding domain PF553_10760 IPR027417 P-loop containing nucleoside triphosphate hydrolase PF553_10760 IPR004095 TGS PF553_10760 IPR012676 TGS-like PF553_10760 IPR023192 TGS-like domain superfamily PF553_10760 IPR013029 YchF, C-terminal domain PF553_10785 IPR011606 Branched-chain amino acid transport, permease PF553_10790 IPR008407 Branched-chain amino acid transport, AzlD PF553_10800 IPR005862 Formate-dependent phosphoribosylglycinamide formyltransferase PF553_10800 IPR011761 ATP-grasp fold PF553_10800 IPR016185 Pre-ATP-grasp domain superfamily PF553_10800 IPR013815 ATP-grasp fold, subdomain 1 PF553_10800 IPR003135 ATP-grasp fold, ATP-dependent carboxylate-amine ligase-type PF553_10800 IPR011054 Rudiment single hybrid motif PF553_10805 IPR002934 Polymerase, nucleotidyl transferase domain PF553_10805 IPR002912 ACT domain PF553_10805 IPR003607 HD/PDEase domain PF553_10805 IPR006674 HD domain PF553_10805 IPR013546 PII-uridylyltransferase/Glutamine-synthetase adenylyltransferase PF553_10805 IPR010043 Bifunctional uridylyltransferase/uridylyl-removing enzyme PF553_10810 IPR004839 Aminotransferase, class I/classII PF553_10810 IPR019880 4-dedimethylamino-4-oxo-anhydrotetracycline transaminase OxyQ PF553_10810 IPR015424 Pyridoxal phosphate-dependent transferase PF553_10810 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 PF553_10810 IPR015421 Pyridoxal phosphate-dependent transferase, major domain PF553_10820 IPR004291 Transposase, IS66 PF553_10820 IPR024463 Transposase TnpC, homeodomain PF553_10820 IPR024474 Zinc-finger binding domain of transposase IS66 PF553_10820 IPR039552 Transposase IS66, C-terminal PF553_10830 IPR009057 Homeobox-like domain superfamily PF553_10840 IPR014710 RmlC-like jelly roll fold PF553_10840 IPR018060 DNA binding HTH domain, AraC-type PF553_10840 IPR032783 AraC-type transcription regulator, ligand-binding domain PF553_10840 IPR009057 Homeobox-like domain superfamily PF553_10840 IPR020449 Transcription regulator HTH, AraC- type PF553_10840 IPR011051 RmlC-like cupin domain superfamily PF553_10845 IPR036249 Thioredoxin-like superfamily PF553_10845 IPR029760 Glutathione peroxidase conserved site PF553_10845 IPR000889 Glutathione peroxidase PF553_10845 IPR029759 Glutathione peroxidase active site PF553_10850 IPR028427 Peptide methionine sulfoxide reductase PF553_10850 IPR011057 Mss4-like superfamily PF553_10850 IPR002579 Peptide methionine sulphoxide reductase MrsB PF553_10855 IPR015421 Pyridoxal phosphate-dependent transferase, major domain PF553_10855 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 PF553_10855 IPR015424 Pyridoxal phosphate-dependent transferase PF553_10855 IPR004839 Aminotransferase, class I/classII PF553_10860 IPR036458 Sodium:dicarboxylate symporter superfamily PF553_10860 IPR018107 Sodium:dicarboxylate symporter, conserved site PF553_10860 IPR001991 Sodium:dicarboxylate symporter PF553_10860 IPR023954 C4-dicarboxylate transport protein PF553_10865 IPR025668 Transposase DDE domain PF553_10870 IPR036152 Asparaginase/glutaminase-like superfamily PF553_10870 IPR004550 L-asparaginase, type II PF553_10870 IPR037152 L-asparaginase, N-terminal domain superfamily PF553_10870 IPR027475 Asparaginase/glutaminase, active site 2 PF553_10870 IPR027473 L-asparaginase, C-terminal PF553_10870 IPR040919 Asparaginase/glutaminase, C-terminal PF553_10870 IPR020827 Asparaginase/glutaminase, active site 1 PF553_10870 IPR006034 Asparaginase/glutaminase-like PF553_10870 IPR027474 L-asparaginase, N-terminal PF553_10875 IPR004805 DNA polymerase III, alpha subunit PF553_10875 IPR003141 Polymerase/histidinol phosphatase, N-terminal PF553_10875 IPR016195 Polymerase/histidinol phosphatase-like PF553_10875 IPR004365 OB-fold nucleic acid binding domain, AA-tRNA synthetase-type PF553_10875 IPR004013 PHP domain PF553_10875 IPR011708 Bacterial DNA polymerase III, alpha subunit, NTPase domain PF553_10875 IPR040982 DNA polymerase III alpha subunit finger domain PF553_10875 IPR041931 Bacterial DNA polymerase III alpha subunit, thumb domain PF553_10875 IPR029460 DNA polymerase, helix-hairpin-helix motif PF553_10880 IPR029026 tRNA (guanine-N1-)-methyltransferase, N-terminal PF553_10880 IPR004384 RNA methyltransferase TrmJ/LasT PF553_10880 IPR029028 Alpha/beta knot methyltransferases PF553_10880 IPR001537 tRNA/rRNA methyltransferase, SpoU type PF553_10885 IPR001451 Hexapeptide repeat PF553_10885 IPR018357 Hexapeptide transferase, conserved site PF553_10885 IPR005881 Serine O-acetyltransferase PF553_10885 IPR011004 Trimeric LpxA-like superfamily PF553_10885 IPR042122 Serine acetyltransferase, N-terminal domain superfamily PF553_10900 IPR036249 Thioredoxin-like superfamily PF553_10900 IPR012336 Thioredoxin-like fold PF553_10900 IPR036188 FAD/NAD(P)-binding domain superfamily PF553_10900 IPR002109 Glutaredoxin PF553_10900 IPR023753 FAD/NAD(P)-binding domain PF553_10900 IPR012081 Alkyl hydroperoxide reductase subunit F PF553_10900 IPR008255 Pyridine nucleotide-disulphide oxidoreductase, class-II, active site PF553_10915 IPR005119 LysR, substrate-binding PF553_10915 IPR000847 Transcription regulator HTH, LysR PF553_10915 IPR036390 Winged helix DNA-binding domain superfamily PF553_10915 IPR036388 Winged helix-like DNA-binding domain superfamily PF553_10920 IPR038770 Sodium/solute symporter superfamily PF553_10920 IPR002657 Bile acid:sodium symporter/arsenical resistance protein Acr3 PF553_10920 IPR004706 Arsenical-resistance protein Acr3 PF553_10925 IPR036390 Winged helix DNA-binding domain superfamily PF553_10925 IPR036388 Winged helix-like DNA-binding domain superfamily PF553_10925 IPR001845 HTH ArsR-type DNA-binding domain PF553_10925 IPR011991 ArsR-like helix-turn-helix domain PF553_10930 IPR006659 Arsenate reductase PF553_10930 IPR036249 Thioredoxin-like superfamily PF553_10930 IPR006660 Arsenate reductase-like PF553_10940 IPR026912 Adenine deaminase C-terminal domain PF553_10940 IPR006680 Amidohydrolase-related PF553_10940 IPR011059 Metal-dependent hydrolase, composite domain superfamily PF553_10940 IPR032466 Metal-dependent hydrolase PF553_10940 IPR006679 Adenine deaminase PF553_10950 IPR005119 LysR, substrate-binding PF553_10950 IPR000847 Transcription regulator HTH, LysR PF553_10950 IPR036390 Winged helix DNA-binding domain superfamily PF553_10950 IPR036388 Winged helix-like DNA-binding domain superfamily PF553_10960 IPR038271 Purine-cytosine permease superfamily PF553_10960 IPR001248 Purine-cytosine permease PF553_10960 IPR012681 Nucleobase cation symporter-1, NCS1 PF553_10965 IPR015942 Asp/Glu/hydantoin racemase PF553_10970 IPR042098 Taurine dioxygenase TauD-like superfamily PF553_10970 IPR003819 TauD/TfdA-like domain PF553_10970 IPR006189 CHASE domain PF553_10975 IPR000515 ABC transporter type 1, transmembrane domain MetI-like PF553_10975 IPR035906 MetI-like superfamily PF553_10980 IPR015859 ABC transporter, taurine import, TauD PF553_10980 IPR027417 P-loop containing nucleoside triphosphate hydrolase PF553_10980 IPR003439 ABC transporter-like PF553_10980 IPR003593 AAA+ ATPase domain PF553_10980 IPR017871 ABC transporter, conserved site PF553_10985 IPR007210 ABC-type glycine betaine transport system, substrate-binding domain PF553_10985 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF PF553_10985 IPR010068 Taurine ABC transporter, substrate-binding protein TauA PF553_11005 IPR005829 Sugar transporter, conserved site PF553_11005 IPR036259 MFS transporter superfamily PF553_11005 IPR005828 Major facilitator, sugar transporter-like PF553_11005 IPR020846 Major facilitator superfamily domain PF553_11010 IPR036661 Luciferase-like domain superfamily PF553_11010 IPR011251 Luciferase-like domain PF553_11010 IPR016215 Nitrilotriacetate monooxygenase component A/pristinamycin IIA synthase subunit A PF553_11025 IPR002585 Cytochrome ubiquinol oxidase subunit 1 PF553_11030 IPR003317 Cytochrome ubiquinol oxidase subunit 2 PF553_11040 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 PF553_11040 IPR015421 Pyridoxal phosphate-dependent transferase, major domain PF553_11040 IPR000524 Transcription regulator HTH, GntR PF553_11040 IPR036388 Winged helix-like DNA-binding domain superfamily PF553_11040 IPR004839 Aminotransferase, class I/classII PF553_11040 IPR015424 Pyridoxal phosphate-dependent transferase PF553_11040 IPR036390 Winged helix DNA-binding domain superfamily PF553_11045 IPR000847 Transcription regulator HTH, LysR PF553_11045 IPR036390 Winged helix DNA-binding domain superfamily PF553_11045 IPR036388 Winged helix-like DNA-binding domain superfamily PF553_11045 IPR037400 Malonate utilization transcriptional regulator, PBP2 domain PF553_11045 IPR005119 LysR, substrate-binding PF553_11060 IPR016036 Malonyl-CoA ACP transacylase, ACP-binding PF553_11060 IPR024925 Malonyl CoA-acyl carrier protein transacylase PF553_11060 IPR016035 Acyl transferase/acyl hydrolase/lysophospholipase PF553_11060 IPR014043 Acyl transferase PF553_11060 IPR001227 Acyl transferase domain superfamily PF553_11060 IPR004410 Malonyl CoA-acyl carrier protein transacylase, FabD-type PF553_11065 IPR017557 Phosphoribosyl-dephospho-CoA transferase PF553_11070 IPR029045 ClpP/crotonase-like domain superfamily PF553_11070 IPR011763 Acetyl-coenzyme A carboxyltransferase, C-terminal PF553_11070 IPR009648 Biotin-dependent malonate decarboxylase, gamma subunit PF553_11075 IPR011762 Acetyl-coenzyme A carboxyltransferase, N-terminal PF553_11075 IPR029045 ClpP/crotonase-like domain superfamily PF553_11075 IPR034733 Acetyl-CoA carboxylase PF553_11075 IPR017556 Biotin-independent malonate decarboxylase, beta subunit PF553_11080 IPR009662 Malonate decarboxylase delta subunit PF553_11080 IPR023439 Malonate decarboxylase/citrate lyase acyl carrier protein PF553_11085 IPR002736 Triphosphoribosyl-dephospho-CoA protein PF553_11085 IPR017555 Triphosphoribosyl-dephospho-CoA synthase PF553_11090 IPR005777 Acetyl-S-ACP:malonate ACP transferase PF553_11090 IPR037171 NagB/RpiA transferase-like PF553_11095 IPR036388 Winged helix-like DNA-binding domain superfamily PF553_11095 IPR000847 Transcription regulator HTH, LysR PF553_11095 IPR005119 LysR, substrate-binding PF553_11095 IPR036390 Winged helix DNA-binding domain superfamily PF553_11105 IPR036259 MFS transporter superfamily PF553_11105 IPR020846 Major facilitator superfamily domain PF553_11105 IPR011701 Major facilitator superfamily PF553_11120 IPR000524 Transcription regulator HTH, GntR PF553_11120 IPR004839 Aminotransferase, class I/classII PF553_11120 IPR036388 Winged helix-like DNA-binding domain superfamily PF553_11120 IPR036390 Winged helix DNA-binding domain superfamily PF553_11120 IPR015421 Pyridoxal phosphate-dependent transferase, major domain PF553_11120 IPR015424 Pyridoxal phosphate-dependent transferase PF553_11125 IPR005261 Conserved hypothetical protein CHP00659 PF553_11125 IPR007300 CidB/LrgB family PF553_11130 IPR023760 Holin-like protein CidA PF553_11130 IPR005538 LrgA/CidA family PF553_11135 IPR000847 Transcription regulator HTH, LysR PF553_11135 IPR036390 Winged helix DNA-binding domain superfamily PF553_11135 IPR036388 Winged helix-like DNA-binding domain superfamily PF553_11135 IPR005119 LysR, substrate-binding PF553_11140 IPR036282 Glutathione S-transferase, C-terminal domain superfamily PF553_11140 IPR040079 Glutathione Transferase family PF553_11140 IPR004045 Glutathione S-transferase, N-terminal PF553_11140 IPR034338 Glutathione S-transferases, subfamily 4, C-terminal PF553_11140 IPR036249 Thioredoxin-like superfamily PF553_11140 IPR010987 Glutathione S-transferase, C-terminal-like PF553_11145 IPR036249 Thioredoxin-like superfamily PF553_11145 IPR040079 Glutathione Transferase family PF553_11145 IPR004045 Glutathione S-transferase, N-terminal PF553_11145 IPR010987 Glutathione S-transferase, C-terminal-like PF553_11145 IPR036282 Glutathione S-transferase, C-terminal domain superfamily PF553_11150 IPR005119 LysR, substrate-binding PF553_11150 IPR000847 Transcription regulator HTH, LysR PF553_11150 IPR036388 Winged helix-like DNA-binding domain superfamily PF553_11150 IPR036390 Winged helix DNA-binding domain superfamily PF553_11155 IPR036291 NAD(P)-binding domain superfamily PF553_11155 IPR002347 Short-chain dehydrogenase/reductase SDR PF553_11155 IPR020904 Short-chain dehydrogenase/reductase, conserved site PF553_11155 IPR011284 3-oxoacyl-(acyl-carrier-protein) reductase PF553_11160 IPR036873 Rhodanese-like domain superfamily PF553_11160 IPR023695 Thiosulfate sulfurtransferase, bacterial PF553_11160 IPR001763 Rhodanese-like domain PF553_11165 IPR001451 Hexapeptide repeat PF553_11165 IPR042122 Serine acetyltransferase, N-terminal domain superfamily PF553_11165 IPR011004 Trimeric LpxA-like superfamily PF553_11175 IPR015421 Pyridoxal phosphate-dependent transferase, major domain PF553_11175 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 PF553_11175 IPR015424 Pyridoxal phosphate-dependent transferase PF553_11175 IPR000192 Aminotransferase class V domain PF553_11175 IPR010970 Cysteine desulfurase, SufS PF553_11180 IPR001123 Amino acid exporter protein, LeuE-type PF553_11180 IPR004778 Homoserine/Threonine efflux protein PF553_11185 IPR005119 LysR, substrate-binding PF553_11185 IPR000847 Transcription regulator HTH, LysR PF553_11185 IPR036388 Winged helix-like DNA-binding domain superfamily PF553_11185 IPR036390 Winged helix DNA-binding domain superfamily PF553_11195 IPR001320 Ionotropic glutamate receptor PF553_11195 IPR018313 Solute-binding protein family 3, conserved site PF553_11195 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF PF553_11200 IPR018313 Solute-binding protein family 3, conserved site PF553_11200 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF PF553_11205 IPR027417 P-loop containing nucleoside triphosphate hydrolase PF553_11205 IPR003593 AAA+ ATPase domain PF553_11205 IPR003439 ABC transporter-like PF553_11205 IPR030679 ABC-type amino acid transport system, ATPase component, HisP-type PF553_11205 IPR017871 ABC transporter, conserved site PF553_11210 IPR010065 Amino acid ABC transporter, permease protein, 3-TM domain PF553_11210 IPR000515 ABC transporter type 1, transmembrane domain MetI-like PF553_11210 IPR035906 MetI-like superfamily PF553_11215 IPR000515 ABC transporter type 1, transmembrane domain MetI-like PF553_11215 IPR010065 Amino acid ABC transporter, permease protein, 3-TM domain PF553_11215 IPR035906 MetI-like superfamily PF553_11230 IPR011006 CheY-like superfamily PF553_11230 IPR003607 HD/PDEase domain PF553_11230 IPR001789 Signal transduction response regulator, receiver domain PF553_11230 IPR037522 HD-GYP domain PF553_11235 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain PF553_11235 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily PF553_11235 IPR036890 Histidine kinase/HSP90-like ATPase superfamily PF553_11235 IPR003594 Histidine kinase/HSP90-like ATPase PF553_11235 IPR011006 CheY-like superfamily PF553_11235 IPR029151 Periplasmic sensor-like domain superfamily PF553_11235 IPR004358 Signal transduction histidine kinase-related protein, C-terminal PF553_11235 IPR001789 Signal transduction response regulator, receiver domain PF553_11235 IPR005467 Histidine kinase domain PF553_11235 IPR035965 PAS domain superfamily PF553_11235 IPR015387 LuxQ, periplasmic PF553_11245 IPR036390 Winged helix DNA-binding domain superfamily PF553_11245 IPR036388 Winged helix-like DNA-binding domain superfamily PF553_11245 IPR019885 Transcription regulator HTH, AsnC-type, conserved site PF553_11245 IPR019887 Transcription regulator AsnC/Lrp, ligand binding domain PF553_11245 IPR019888 Transcription regulator AsnC-type PF553_11245 IPR011008 Dimeric alpha-beta barrel PF553_11245 IPR000485 AsnC-type HTH domain PF553_11245 IPR011991 ArsR-like helix-turn-helix domain PF553_11255 IPR006197 Peptidase S24, LexA-like PF553_11255 IPR039418 LexA-like PF553_11255 IPR015927 Peptidase S24/S26A/S26B/S26C PF553_11255 IPR036286 LexA/Signal peptidase-like superfamily PF553_11275 IPR020904 Short-chain dehydrogenase/reductase, conserved site PF553_11275 IPR002347 Short-chain dehydrogenase/reductase SDR PF553_11275 IPR036291 NAD(P)-binding domain superfamily PF553_11290 IPR036653 CinA-like, C-terminal PF553_11290 IPR008136 CinA, C-terminal PF553_11290 IPR041424 CinA, KH domain PF553_11290 IPR036425 MoaB/Mog-like domain superfamily PF553_11290 IPR001453 MoaB/Mog domain PF553_11290 IPR008135 Competence-induced protein CinA PF553_11325 IPR005119 LysR, substrate-binding PF553_11325 IPR000847 Transcription regulator HTH, LysR PF553_11325 IPR036388 Winged helix-like DNA-binding domain superfamily PF553_11325 IPR036390 Winged helix DNA-binding domain superfamily PF553_11345 IPR025110 AMP-binding enzyme, C-terminal domain PF553_11345 IPR000873 AMP-dependent synthetase/ligase PF553_11345 IPR020845 AMP-binding, conserved site PF553_11350 IPR009057 Homeobox-like domain superfamily PF553_11350 IPR001647 DNA-binding HTH domain, TetR-type PF553_11355 IPR006089 Acyl-CoA dehydrogenase, conserved site PF553_11355 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal PF553_11355 IPR036250 Acyl-CoA dehydrogenase-like, C-terminal PF553_11355 IPR006091 Acyl-CoA oxidase/dehydrogenase, central domain PF553_11355 IPR037069 Acyl-CoA dehydrogenase/oxidase, N-terminal domain superfamily PF553_11355 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal PF553_11355 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily PF553_11360 IPR011762 Acetyl-coenzyme A carboxyltransferase, N-terminal PF553_11360 IPR011763 Acetyl-coenzyme A carboxyltransferase, C-terminal PF553_11360 IPR034733 Acetyl-CoA carboxylase PF553_11360 IPR029045 ClpP/crotonase-like domain superfamily PF553_11365 IPR029045 ClpP/crotonase-like domain superfamily PF553_11365 IPR018376 Enoyl-CoA hydratase/isomerase, conserved site PF553_11365 IPR001753 Enoyl-CoA hydratase/isomerase PF553_11365 IPR014748 Enoyl-CoA hydratase, C-terminal PF553_11370 IPR041265 Propionyl-coenzyme A carboxylase, BT domain PF553_11370 IPR011764 Biotin carboxylation domain PF553_11370 IPR001882 Biotin-binding site PF553_11370 IPR005481 Biotin carboxylase-like, N-terminal domain PF553_11370 IPR013815 ATP-grasp fold, subdomain 1 PF553_11370 IPR011761 ATP-grasp fold PF553_11370 IPR000089 Biotin/lipoyl attachment PF553_11370 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain PF553_11370 IPR011053 Single hybrid motif PF553_11370 IPR011054 Rudiment single hybrid motif PF553_11370 IPR005482 Biotin carboxylase, C-terminal PF553_11370 IPR016185 Pre-ATP-grasp domain superfamily PF553_11375 IPR013785 Aldolase-type TIM barrel PF553_11375 IPR000138 Hydroxymethylglutaryl-CoA lyase, active site PF553_11375 IPR027167 Hydroxymethylglutaryl-CoA lyase PF553_11375 IPR000891 Pyruvate carboxyltransferase PF553_11380 IPR005119 LysR, substrate-binding PF553_11380 IPR000847 Transcription regulator HTH, LysR PF553_11380 IPR036388 Winged helix-like DNA-binding domain superfamily PF553_11380 IPR036390 Winged helix DNA-binding domain superfamily PF553_11395 IPR037069 Acyl-CoA dehydrogenase/oxidase, N-terminal domain superfamily PF553_11395 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal PF553_11395 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal PF553_11395 IPR036250 Acyl-CoA dehydrogenase-like, C-terminal PF553_11395 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily PF553_11395 IPR006091 Acyl-CoA oxidase/dehydrogenase, central domain PF553_11395 IPR025878 Acetyl-CoA dehydrogenase-like C-terminal domain PF553_11405 IPR020846 Major facilitator superfamily domain PF553_11405 IPR011701 Major facilitator superfamily PF553_11405 IPR036259 MFS transporter superfamily PF553_11415 IPR037171 NagB/RpiA transferase-like PF553_11415 IPR004164 Coenzyme A transferase active site PF553_11415 IPR004165 Coenzyme A transferase family I PF553_11415 IPR012791 3-oxoacid CoA-transferase, subunit B PF553_11420 IPR037171 NagB/RpiA transferase-like PF553_11420 IPR004163 Coenzyme A transferase binding site PF553_11420 IPR012792 3-oxoacid CoA-transferase, subunit A PF553_11420 IPR004165 Coenzyme A transferase family I PF553_11425 IPR005829 Sugar transporter, conserved site PF553_11425 IPR036259 MFS transporter superfamily PF553_11425 IPR020846 Major facilitator superfamily domain PF553_11425 IPR004746 Major facilitator superfamily, aromatic acid:H+ symporter family PF553_11425 IPR011701 Major facilitator superfamily PF553_11430 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily PF553_11430 IPR037069 Acyl-CoA dehydrogenase/oxidase, N-terminal domain superfamily PF553_11430 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal PF553_11430 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal PF553_11430 IPR036250 Acyl-CoA dehydrogenase-like, C-terminal PF553_11430 IPR006091 Acyl-CoA oxidase/dehydrogenase, central domain PF553_11430 IPR006089 Acyl-CoA dehydrogenase, conserved site PF553_11435 IPR014748 Enoyl-CoA hydratase, C-terminal PF553_11435 IPR018376 Enoyl-CoA hydratase/isomerase, conserved site PF553_11435 IPR029045 ClpP/crotonase-like domain superfamily PF553_11435 IPR001753 Enoyl-CoA hydratase/isomerase PF553_11440 IPR011284 3-oxoacyl-(acyl-carrier-protein) reductase PF553_11440 IPR036291 NAD(P)-binding domain superfamily PF553_11440 IPR020904 Short-chain dehydrogenase/reductase, conserved site PF553_11440 IPR002347 Short-chain dehydrogenase/reductase SDR PF553_11445 IPR036291 NAD(P)-binding domain superfamily PF553_11445 IPR006180 3-hydroxyacyl-CoA dehydrogenase, conserved site PF553_11445 IPR006176 3-hydroxyacyl-CoA dehydrogenase, NAD binding PF553_11445 IPR011967 3-hydroxyacyl-CoA dehydrogenase PaaC PF553_11445 IPR006108 3-hydroxyacyl-CoA dehydrogenase, C-terminal PF553_11445 IPR041040 3-hydroxybutyryl-CoA dehydrogenase reduced Rossmann-fold domain PF553_11445 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily PF553_11450 IPR020613 Thiolase, conserved site PF553_11450 IPR012793 Beta-ketoadipyl CoA thiolase PF553_11450 IPR002155 Thiolase PF553_11450 IPR016039 Thiolase-like PF553_11450 IPR020615 Thiolase, acyl-enzyme intermediate active site PF553_11450 IPR020610 Thiolase, active site PF553_11450 IPR020616 Thiolase, N-terminal PF553_11450 IPR020617 Thiolase, C-terminal PF553_11455 IPR036390 Winged helix DNA-binding domain superfamily PF553_11455 IPR036388 Winged helix-like DNA-binding domain superfamily PF553_11455 IPR005471 Transcription regulator IclR, N-terminal PF553_11455 IPR014757 Transcription regulator IclR, C-terminal PF553_11455 IPR029016 GAF-like domain superfamily PF553_11460 IPR020846 Major facilitator superfamily domain PF553_11460 IPR036259 MFS transporter superfamily PF553_11460 IPR011701 Major facilitator superfamily PF553_11465 IPR004136 Nitronate monooxygenase PF553_11465 IPR013785 Aldolase-type TIM barrel PF553_11470 IPR029045 ClpP/crotonase-like domain superfamily PF553_11470 IPR001753 Enoyl-CoA hydratase/isomerase PF553_11470 IPR011968 Phenylacetate degradation probable enoyl-CoA hydratase PaaB PF553_11470 IPR014748 Enoyl-CoA hydratase, C-terminal PF553_11475 IPR005471 Transcription regulator IclR, N-terminal PF553_11475 IPR036388 Winged helix-like DNA-binding domain superfamily PF553_11475 IPR036390 Winged helix DNA-binding domain superfamily PF553_11475 IPR029016 GAF-like domain superfamily PF553_11475 IPR014757 Transcription regulator IclR, C-terminal PF553_11480 IPR023606 CoA-transferase family III domain superfamily PF553_11480 IPR003673 CoA-transferase family III PF553_11485 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal PF553_11485 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal PF553_11485 IPR036250 Acyl-CoA dehydrogenase-like, C-terminal PF553_11485 IPR006091 Acyl-CoA oxidase/dehydrogenase, central domain PF553_11485 IPR006089 Acyl-CoA dehydrogenase, conserved site PF553_11485 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily PF553_11485 IPR037069 Acyl-CoA dehydrogenase/oxidase, N-terminal domain superfamily PF553_11490 IPR004746 Major facilitator superfamily, aromatic acid:H+ symporter family PF553_11490 IPR020846 Major facilitator superfamily domain PF553_11490 IPR011701 Major facilitator superfamily PF553_11490 IPR005829 Sugar transporter, conserved site PF553_11490 IPR036259 MFS transporter superfamily PF553_11495 IPR036412 HAD-like superfamily PF553_11495 IPR006439 HAD hydrolase, subfamily IA PF553_11495 IPR041492 Haloacid dehalogenase-like hydrolase PF553_11495 IPR023214 HAD superfamily PF553_11495 IPR023198 Phosphoglycolate phosphatase-like, domain 2 PF553_11495 IPR006323 Phosphonoacetaldehyde hydrolase PF553_11500 IPR015421 Pyridoxal phosphate-dependent transferase, major domain PF553_11500 IPR015424 Pyridoxal phosphate-dependent transferase PF553_11500 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 PF553_11500 IPR012703 2-aminoethylphosphonate--pyruvate transaminase PF553_11500 IPR000192 Aminotransferase class V domain PF553_11500 IPR024169 Serine-pyruvate aminotransferase/2-aminoethylphosphonate-pyruvate transaminase PF553_11505 IPR006076 FAD dependent oxidoreductase PF553_11505 IPR006281 Sarcosine oxidase, monomeric PF553_11505 IPR036188 FAD/NAD(P)-binding domain superfamily PF553_11510 IPR035906 MetI-like superfamily PF553_11510 IPR000515 ABC transporter type 1, transmembrane domain MetI-like PF553_11515 IPR003593 AAA+ ATPase domain PF553_11515 IPR013611 Transport-associated OB, type 2 PF553_11515 IPR027417 P-loop containing nucleoside triphosphate hydrolase PF553_11515 IPR008995 Molybdate/tungstate binding, C-terminal PF553_11515 IPR017871 ABC transporter, conserved site PF553_11515 IPR003439 ABC transporter-like PF553_11515 IPR014769 ABC transporter, sulphate/thiosulphate import, ATP-binding protein CysA, C-terminal PF553_11515 IPR017666 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT2 PF553_11520 IPR026045 Ferric binding protein PF553_11525 IPR036390 Winged helix DNA-binding domain superfamily PF553_11525 IPR028978 Chorismate pyruvate-lyase/UbiC transcription regulator-associated domain superfamily PF553_11525 IPR000524 Transcription regulator HTH, GntR PF553_11525 IPR036388 Winged helix-like DNA-binding domain superfamily PF553_11525 IPR017722 Phosphonate utilization transcriptional regulator PhnR PF553_11525 IPR011663 UbiC transcription regulator-associated PF553_11530 IPR036188 FAD/NAD(P)-binding domain superfamily PF553_11530 IPR012733 4-hydroxybenzoate 3-monooxygenase PF553_11530 IPR002938 FAD-binding domain PF553_11535 IPR029016 GAF-like domain superfamily PF553_11535 IPR012794 Beta-ketoadipate transcriptional regulator, PcaR/PcaU/PobR PF553_11535 IPR014757 Transcription regulator IclR, C-terminal PF553_11535 IPR005471 Transcription regulator IclR, N-terminal PF553_11535 IPR036388 Winged helix-like DNA-binding domain superfamily PF553_11535 IPR036390 Winged helix DNA-binding domain superfamily PF553_11540 IPR029039 Flavoprotein-like superfamily PF553_11540 IPR003680 Flavodoxin-like fold PF553_11540 IPR023048 NADH-azoreductase, FMN-dependent PF553_11545 IPR036388 Winged helix-like DNA-binding domain superfamily PF553_11545 IPR005119 LysR, substrate-binding PF553_11545 IPR000847 Transcription regulator HTH, LysR PF553_11545 IPR036390 Winged helix DNA-binding domain superfamily PF553_11550 IPR029032 AhpD-like PF553_11550 IPR012788 4-carboxymuconolactone decarboxylase PF553_11550 IPR003779 Carboxymuconolactone decarboxylase-like PF553_11555 IPR015590 Aldehyde dehydrogenase domain PF553_11555 IPR016161 Aldehyde/histidinol dehydrogenase PF553_11555 IPR016162 Aldehyde dehydrogenase, N-terminal PF553_11555 IPR029510 Aldehyde dehydrogenase, glutamic acid active site PF553_11555 IPR016160 Aldehyde dehydrogenase, cysteine active site PF553_11555 IPR010102 Succinate semialdehyde dehydrogenase PF553_11555 IPR016163 Aldehyde dehydrogenase, C-terminal PF553_11565 IPR001248 Purine-cytosine permease PF553_11565 IPR038271 Purine-cytosine permease superfamily PF553_11565 IPR026030 Purine-cytosine permease Fcy2/21/22 PF553_11575 IPR016161 Aldehyde/histidinol dehydrogenase PF553_11575 IPR015590 Aldehyde dehydrogenase domain PF553_11575 IPR016162 Aldehyde dehydrogenase, N-terminal PF553_11575 IPR029510 Aldehyde dehydrogenase, glutamic acid active site PF553_11575 IPR016160 Aldehyde dehydrogenase, cysteine active site PF553_11575 IPR016163 Aldehyde dehydrogenase, C-terminal PF553_11580 IPR011251 Luciferase-like domain PF553_11580 IPR036661 Luciferase-like domain superfamily PF553_11585 IPR002563 Flavin reductase like domain PF553_11585 IPR012349 FMN-binding split barrel PF553_11590 IPR000073 Alpha/beta hydrolase fold-1 PF553_11590 IPR029058 Alpha/Beta hydrolase fold PF553_11610 IPR016174 Di-haem cytochrome, transmembrane PF553_11610 IPR011577 Cytochrome b561, bacterial/Ni-hydrogenase PF553_11615 IPR020835 Catalase superfamily PF553_11615 IPR024168 Catalase, SrpA-type, predicted PF553_11615 IPR018028 Catalase, mono-functional, haem-containing PF553_11615 IPR011614 Catalase core domain PF553_11640 IPR041679 DNA2/NAM7 helicase-like, AAA domain PF553_11640 IPR041677 DNA2/NAM7 helicase, AAA domain PF553_11640 IPR025103 Protein of unknown function DUF4011 PF553_11640 IPR041679 DNA2/NAM7 helicase-like, AAA domain PF553_11640 IPR041677 DNA2/NAM7 helicase, AAA domain PF553_11640 IPR025103 Protein of unknown function DUF4011 PF553_11640 IPR027417 P-loop containing nucleoside triphosphate hydrolase PF553_11640 IPR027417 P-loop containing nucleoside triphosphate hydrolase PF553_11645 IPR029069 HotDog domain superfamily PF553_11645 IPR011973 Phenylacetic acid degradation protein PaaD PF553_11645 IPR006683 Thioesterase domain PF553_11645 IPR003736 Phenylacetic acid degradation-related domain PF553_11650 IPR011004 Trimeric LpxA-like superfamily PF553_11650 IPR001451 Hexapeptide repeat PF553_11650 IPR023446 Carnitine operon protein CaiE PF553_11655 IPR012906 PaaX-like, N-terminal PF553_11655 IPR013225 PaaX-like, C-terminal PF553_11655 IPR011965 Phenylacetic acid degradation operon negative regulatory protein PaaX PF553_11655 IPR036388 Winged helix-like DNA-binding domain superfamily PF553_11660 IPR011880 Phenylacetate-CoA ligase PF553_11660 IPR028154 AMP-dependent ligase, C-terminal PF553_11660 IPR000873 AMP-dependent synthetase/ligase PF553_11660 IPR042099 AMP-dependent synthetase-like superfamily PF553_11665 IPR020617 Thiolase, C-terminal PF553_11665 IPR020610 Thiolase, active site PF553_11665 IPR020615 Thiolase, acyl-enzyme intermediate active site PF553_11665 IPR020616 Thiolase, N-terminal PF553_11665 IPR002155 Thiolase PF553_11665 IPR012793 Beta-ketoadipyl CoA thiolase PF553_11665 IPR020613 Thiolase, conserved site PF553_11665 IPR016039 Thiolase-like PF553_11670 IPR036291 NAD(P)-binding domain superfamily PF553_11670 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily PF553_11670 IPR041040 3-hydroxybutyryl-CoA dehydrogenase reduced Rossmann-fold domain PF553_11670 IPR006180 3-hydroxyacyl-CoA dehydrogenase, conserved site PF553_11670 IPR011967 3-hydroxyacyl-CoA dehydrogenase PaaC PF553_11670 IPR006176 3-hydroxyacyl-CoA dehydrogenase, NAD binding PF553_11670 IPR006108 3-hydroxyacyl-CoA dehydrogenase, C-terminal PF553_11675 IPR001753 Enoyl-CoA hydratase/isomerase PF553_11675 IPR029045 ClpP/crotonase-like domain superfamily PF553_11675 IPR014748 Enoyl-CoA hydratase, C-terminal PF553_11675 IPR011968 Phenylacetate degradation probable enoyl-CoA hydratase PaaB PF553_11680 IPR014748 Enoyl-CoA hydratase, C-terminal PF553_11680 IPR001753 Enoyl-CoA hydratase/isomerase PF553_11680 IPR018376 Enoyl-CoA hydratase/isomerase, conserved site PF553_11680 IPR029045 ClpP/crotonase-like domain superfamily PF553_11685 IPR017938 Riboflavin synthase-like beta-barrel PF553_11685 IPR036010 2Fe-2S ferredoxin-like superfamily PF553_11685 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain PF553_11685 IPR039261 Ferredoxin-NADP reductase (FNR), nucleotide-binding domain PF553_11685 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase PF553_11685 IPR017927 FAD-binding domain, ferredoxin reductase-type PF553_11685 IPR008333 Flavoprotein pyridine nucleotide cytochrome reductase-like, FAD-binding domain PF553_11685 IPR012675 Beta-grasp domain superfamily PF553_11685 IPR006058 2Fe-2S ferredoxin, iron-sulphur binding site PF553_11685 IPR011884 Phenylacetate-CoA oxygenase/reductase, PaaK subunit PF553_11685 IPR001433 Oxidoreductase FAD/NAD(P)-binding PF553_11690 IPR034904 Fe-S cluster assembly domain superfamily PF553_11690 IPR002744 MIP18 family-like PF553_11690 IPR011883 Phenylacetate-CoA oxygenase, PaaJ subunit PF553_11695 IPR011882 1,2-phenylacetyl-CoA epoxidase, subunit C PF553_11695 IPR007814 1,2-phenylacetyl-CoA epoxidase, subunit A/C PF553_11695 IPR012347 Ferritin-like PF553_11695 IPR009078 Ferritin-like superfamily PF553_11700 IPR009359 Phenylacetic acid degradation B PF553_11700 IPR038693 Phenylacetyl-CoA epoxidase, subunit B PF553_11705 IPR009078 Ferritin-like superfamily PF553_11705 IPR007814 1,2-phenylacetyl-CoA epoxidase, subunit A/C PF553_11705 IPR012347 Ferritin-like PF553_11705 IPR011881 1,2-phenylacetyl-CoA epoxidase, subunit A PF553_11710 IPR011966 Phenylacetic acid degradation protein PaaN PF553_11710 IPR002539 MaoC-like dehydratase domain PF553_11710 IPR029069 HotDog domain superfamily PF553_11710 IPR015590 Aldehyde dehydrogenase domain PF553_11710 IPR016162 Aldehyde dehydrogenase, N-terminal PF553_11710 IPR016163 Aldehyde dehydrogenase, C-terminal PF553_11710 IPR016161 Aldehyde/histidinol dehydrogenase PF553_11715 IPR005131 Serine dehydratase beta chain PF553_11715 IPR005130 Serine dehydratase-like, alpha subunit PF553_11715 IPR004644 Iron-sulphur-dependent L-serine dehydratase single chain form PF553_11715 IPR029009 Allosteric substrate binding domain superfamily PF553_11720 IPR002293 Amino acid/polyamine transporter I PF553_11725 IPR016161 Aldehyde/histidinol dehydrogenase PF553_11725 IPR016162 Aldehyde dehydrogenase, N-terminal PF553_11725 IPR016163 Aldehyde dehydrogenase, C-terminal PF553_11725 IPR015590 Aldehyde dehydrogenase domain PF553_11730 IPR020846 Major facilitator superfamily domain PF553_11730 IPR005829 Sugar transporter, conserved site PF553_11730 IPR036259 MFS transporter superfamily PF553_11730 IPR005828 Major facilitator, sugar transporter-like PF553_11740 IPR036188 FAD/NAD(P)-binding domain superfamily PF553_11740 IPR023753 FAD/NAD(P)-binding domain PF553_11740 IPR017224 Opine oxidase, subunit A/hydrogen cyanide synthase, subunit B PF553_11740 IPR007419 BFD-like [2Fe-2S]-binding domain PF553_11740 IPR041854 BFD-like [2Fe-2S]-binding domain superfamily PF553_11750 IPR023080 D-amino acid dehydrogenase DadA PF553_11750 IPR006076 FAD dependent oxidoreductase PF553_11750 IPR036188 FAD/NAD(P)-binding domain superfamily PF553_11755 IPR008794 Proline racemase family PF553_11760 IPR036390 Winged helix DNA-binding domain superfamily PF553_11760 IPR036388 Winged helix-like DNA-binding domain superfamily PF553_11760 IPR000524 Transcription regulator HTH, GntR PF553_11760 IPR008920 Transcription regulator FadR/GntR, C-terminal PF553_11770 IPR020624 Schiff base-forming aldolase, conserved site PF553_11770 IPR020625 Schiff base-forming aldolase, active site PF553_11770 IPR005263 4-hydroxy-tetrahydrodipicolinate synthase, DapA PF553_11770 IPR013785 Aldolase-type TIM barrel PF553_11770 IPR002220 DapA-like PF553_11780 IPR015358 Transcription regulator MerR, DNA binding PF553_11780 IPR010211 Redox-sensitive transcriptional activator SoxR PF553_11780 IPR000551 MerR-type HTH domain PF553_11780 IPR009061 Putative DNA-binding domain superfamily PF553_11790 IPR003828 Epoxyqueuosine reductase QueH PF553_11805 IPR036259 MFS transporter superfamily PF553_11805 IPR020846 Major facilitator superfamily domain PF553_11805 IPR011701 Major facilitator superfamily PF553_11805 IPR004747 Cyanate transport system protein PF553_11810 IPR016192 APOBEC/CMP deaminase, zinc-binding PF553_11810 IPR016193 Cytidine deaminase-like PF553_11810 IPR002125 Cytidine and deoxycytidylate deaminase domain PF553_11820 IPR037404 HTH-type transcriptional activator IlvY, PBP2 domain PF553_11820 IPR005119 LysR, substrate-binding PF553_11820 IPR000847 Transcription regulator HTH, LysR PF553_11820 IPR036388 Winged helix-like DNA-binding domain superfamily PF553_11820 IPR036390 Winged helix DNA-binding domain superfamily PF553_11840 IPR010263 Type VI secretion protein, VC_A0114 PF553_11845 IPR017740 Type VI secretion system-associated, ImpA PF553_11845 IPR010657 ImpA, N-terminal PF553_11850 IPR004176 Clp, N-terminal PF553_11850 IPR003959 ATPase, AAA-type, core PF553_11850 IPR003593 AAA+ ATPase domain PF553_11850 IPR036628 Clp, N-terminal domain superfamily PF553_11850 IPR019489 Clp ATPase, C-terminal PF553_11850 IPR017729 Type VI secretion system, ATPase ClpV1 PF553_11850 IPR027417 P-loop containing nucleoside triphosphate hydrolase PF553_11850 IPR041546 ClpA/ClpB, AAA lid domain PF553_11850 IPR018368 ClpA/B, conserved site 1 PF553_11850 IPR001270 ClpA/B family PF553_11860 IPR011250 Outer membrane protein/outer membrane enzyme PagP, beta-barrel PF553_11860 IPR006664 Outer membrane protein, bacterial PF553_11860 IPR002368 Outer membrane protein, OmpA PF553_11860 IPR006665 OmpA-like domain PF553_11860 IPR006690 Outer membrane protein, OmpA-like, conserved site PF553_11860 IPR036737 OmpA-like domain superfamily PF553_11860 IPR000498 Outer membrane protein OmpA-like, transmembrane domain PF553_11870 IPR025743 IcmF-related, N-terminal domain PF553_11870 IPR010623 Type VI secretion system IcmF, C-terminal PF553_11870 IPR017731 Type VI secretion system, IcmF PF553_11870 IPR027417 P-loop containing nucleoside triphosphate hydrolase PF553_11870 IPR009612 IcmF-related PF553_11900 IPR010269 Type VI secretion protein, EvpB/VC_A0108, tail sheath PF553_11925 IPR003593 AAA+ ATPase domain PF553_11925 IPR017871 ABC transporter, conserved site PF553_11925 IPR027417 P-loop containing nucleoside triphosphate hydrolase PF553_11925 IPR003439 ABC transporter-like PF553_11930 IPR001320 Ionotropic glutamate receptor PF553_11930 IPR018313 Solute-binding protein family 3, conserved site PF553_11930 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF PF553_11935 IPR014085 Allophanate hydrolase PF553_11935 IPR023631 Amidase signature domain PF553_11935 IPR036928 Amidase signature (AS) superfamily PF553_11940 IPR013321 Arc-type ribbon-helix-helix PF553_11940 IPR002145 Ribbon-helix-helix protein, CopG PF553_11940 IPR027271 Acetolactate synthase/Transcription factor NikR, C-terminal PF553_11940 IPR010985 Ribbon-helix-helix PF553_11940 IPR014864 Transcription factor, NikR, nickel binding C-terminal PF553_11940 IPR022988 Nickel-responsive transcriptional regulator NikR PF553_11955 IPR002577 Helix-turn-helix, HxlR type PF553_11955 IPR036388 Winged helix-like DNA-binding domain superfamily PF553_11955 IPR036390 Winged helix DNA-binding domain superfamily PF553_11960 IPR023948 Glutathione-regulated potassium-efflux system ancillary protein KefF PF553_11960 IPR029039 Flavoprotein-like superfamily PF553_11960 IPR003680 Flavodoxin-like fold PF553_11965 IPR011764 Biotin carboxylation domain PF553_11965 IPR011761 ATP-grasp fold PF553_11965 IPR005482 Biotin carboxylase, C-terminal PF553_11965 IPR016185 Pre-ATP-grasp domain superfamily PF553_11965 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain PF553_11965 IPR011054 Rudiment single hybrid motif PF553_11965 IPR005481 Biotin carboxylase-like, N-terminal domain PF553_11980 IPR011032 GroES-like superfamily PF553_11980 IPR013154 Alcohol dehydrogenase, N-terminal PF553_11980 IPR013149 Alcohol dehydrogenase, C-terminal PF553_11980 IPR027399 Alcohol dehydrogenase GroES-associated PF553_11980 IPR036291 NAD(P)-binding domain superfamily PF553_11980 IPR002328 Alcohol dehydrogenase, zinc-type, conserved site PF553_12005 IPR024973 ESPR domain PF553_12005 IPR010069 Filamentous haemagglutinin, 20-residue x2 repeat PF553_12005 IPR008638 Filamentous haemagglutinin, N-terminal PF553_12005 IPR025157 Hemagglutinin repeat PF553_12005 IPR012334 Pectin lyase fold PF553_12005 IPR011050 Pectin lyase fold/virulence factor PF553_12005 IPR006914 VENN motif-containing domain PF553_12010 IPR035251 ShlB, POTRA domain PF553_12010 IPR005565 Haemolysin activator HlyB, C-terminal PF553_12010 IPR027282 Two partner secretion pathway transporter PF553_12010 IPR013686 Polypeptide-transport-associated, ShlB-type PF553_12010 IPR034746 POTRA domain PF553_12015 IPR014743 Chloride channel, core PF553_12015 IPR001807 Chloride channel, voltage gated PF553_12020 IPR005482 Biotin carboxylase, C-terminal PF553_12020 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain PF553_12020 IPR016185 Pre-ATP-grasp domain superfamily PF553_12020 IPR011054 Rudiment single hybrid motif PF553_12020 IPR011764 Biotin carboxylation domain PF553_12020 IPR005481 Biotin carboxylase-like, N-terminal domain PF553_12020 IPR011053 Single hybrid motif PF553_12020 IPR011761 ATP-grasp fold PF553_12020 IPR000089 Biotin/lipoyl attachment PF553_12020 IPR001882 Biotin-binding site PF553_12030 IPR016938 Uncharacterised protein family UPF0317 PF553_12030 IPR038021 Putative hydro-lyase PF553_12030 IPR009906 D-glutamate cyclase PF553_12035 IPR011330 Glycoside hydrolase/deacetylase, beta/alpha-barrel PF553_12035 IPR005501 LamB/YcsF/PxpA-like PF553_12040 IPR001046 NRAMP family PF553_12045 IPR005119 LysR, substrate-binding PF553_12045 IPR000847 Transcription regulator HTH, LysR PF553_12045 IPR036388 Winged helix-like DNA-binding domain superfamily PF553_12045 IPR036390 Winged helix DNA-binding domain superfamily PF553_12065 IPR023733 Pyrophosphatase PpaX PF553_12065 IPR023198 Phosphoglycolate phosphatase-like, domain 2 PF553_12065 IPR036412 HAD-like superfamily PF553_12065 IPR023214 HAD superfamily PF553_12065 IPR041492 Haloacid dehalogenase-like hydrolase PF553_12065 IPR006439 HAD hydrolase, subfamily IA PF553_12085 IPR006108 3-hydroxyacyl-CoA dehydrogenase, C-terminal PF553_12085 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily PF553_12085 IPR006176 3-hydroxyacyl-CoA dehydrogenase, NAD binding PF553_12085 IPR013328 6-phosphogluconate dehydrogenase, domain 2 PF553_12085 IPR026578 L-carnitine dehydrogenase PF553_12085 IPR036291 NAD(P)-binding domain superfamily PF553_12105 IPR020846 Major facilitator superfamily domain PF553_12105 IPR036259 MFS transporter superfamily PF553_12105 IPR005829 Sugar transporter, conserved site PF553_12105 IPR011701 Major facilitator superfamily PF553_12105 IPR004746 Major facilitator superfamily, aromatic acid:H+ symporter family PF553_12120 IPR011920 Lipid A biosynthesis lauroyl (or palmitoleoyl) acyltransferase PF553_12120 IPR004960 Bacterial lipid A biosynthesis acyltransferase PF553_12125 IPR029787 Nucleotide cyclase PF553_12125 IPR000160 GGDEF domain PF553_12125 IPR035919 EAL domain superfamily PF553_12125 IPR001633 EAL domain PF553_12125 IPR005330 MHYT domain PF553_12130 IPR000620 EamA domain PF553_12135 IPR036390 Winged helix DNA-binding domain superfamily PF553_12135 IPR036388 Winged helix-like DNA-binding domain superfamily PF553_12135 IPR019888 Transcription regulator AsnC-type PF553_12135 IPR019887 Transcription regulator AsnC/Lrp, ligand binding domain PF553_12135 IPR011008 Dimeric alpha-beta barrel PF553_12135 IPR011991 ArsR-like helix-turn-helix domain PF553_12135 IPR019885 Transcription regulator HTH, AsnC-type, conserved site PF553_12135 IPR000485 AsnC-type HTH domain PF553_12140 IPR007861 DNA mismatch repair protein MutS, clamp PF553_12140 IPR017261 DNA mismatch repair protein MutS/MSH PF553_12140 IPR007695 DNA mismatch repair protein MutS-like, N-terminal PF553_12140 IPR027417 P-loop containing nucleoside triphosphate hydrolase PF553_12140 IPR036678 MutS, connector domain superfamily PF553_12140 IPR007860 DNA mismatch repair protein MutS, connector domain PF553_12140 IPR005748 DNA mismatch repair protein MutS PF553_12140 IPR016151 DNA mismatch repair protein MutS, N-terminal PF553_12140 IPR000432 DNA mismatch repair protein MutS, C-terminal PF553_12140 IPR036187 DNA mismatch repair protein MutS, core domain superfamily PF553_12140 IPR007696 DNA mismatch repair protein MutS, core PF553_12150 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site PF553_12150 IPR000813 7Fe ferredoxin PF553_12150 IPR022569 Ferredoxin, C-terminal PF553_12150 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain PF553_12160 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase PF553_12160 IPR002935 Class I-like SAM-dependent O-methyltransferase PF553_12170 IPR001451 Hexapeptide repeat PF553_12170 IPR018357 Hexapeptide transferase, conserved site PF553_12170 IPR011004 Trimeric LpxA-like superfamily PF553_12175 IPR020568 Ribosomal protein S5 domain 2-type fold PF553_12175 IPR001498 Impact, N-terminal PF553_12175 IPR020569 Uncharacterised protein family UPF0029, Impact, conserved site PF553_12175 IPR036956 Impact, N-terminal domain superfamily PF553_12175 IPR035647 EF-G domain III/V-like PF553_12175 IPR023582 Impact family PF553_12180 IPR006144 Secretion protein HlyD, conserved site PF553_12180 IPR010129 Type I secretion membrane fusion protein, HlyD family PF553_12190 IPR004291 Transposase, IS66 PF553_12190 IPR024463 Transposase TnpC, homeodomain PF553_12190 IPR039552 Transposase IS66, C-terminal PF553_12190 IPR024474 Zinc-finger binding domain of transposase IS66 PF553_12200 IPR009057 Homeobox-like domain superfamily PF553_12210 IPR003423 Outer membrane efflux protein PF553_12210 IPR010130 Type I secretion outer membrane protein, TolC PF553_12215 IPR003439 ABC transporter-like PF553_12215 IPR017871 ABC transporter, conserved site PF553_12215 IPR032823 Branched-chain amino acid ATP-binding cassette transporter, C-terminal PF553_12215 IPR030921 LPS export ABC transporter, ATP-binding protein LptB PF553_12215 IPR027417 P-loop containing nucleoside triphosphate hydrolase PF553_12215 IPR003593 AAA+ ATPase domain PF553_12220 IPR005653 Organic solvent tolerance-like, N-terminal PF553_12220 IPR014340 Lipopolysaccharide export system protein LptA PF553_12230 IPR010023 KdsC family PF553_12230 IPR036412 HAD-like superfamily PF553_12230 IPR023214 HAD superfamily PF553_12235 IPR000644 CBS domain PF553_12235 IPR004800 Phosphosugar isomerase, KdsD/KpsF-type PF553_12235 IPR001347 Sugar isomerase (SIS) PF553_12235 IPR035474 KpsF-like, SIS domain PF553_12240 IPR009080 Aminoacyl-tRNA synthetase, class Ia, anticodon-binding PF553_12240 IPR015273 Cysteinyl-tRNA synthetase, class Ia, DALR PF553_12240 IPR024909 Cysteinyl-tRNA synthetase/mycothiol ligase PF553_12240 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold PF553_12240 IPR015803 Cysteine-tRNA ligase PF553_12240 IPR032678 tRNA synthetases class I, catalytic domain PF553_12265 IPR036390 Winged helix DNA-binding domain superfamily PF553_12265 IPR036388 Winged helix-like DNA-binding domain superfamily PF553_12265 IPR002577 Helix-turn-helix, HxlR type PF553_12265 IPR011991 ArsR-like helix-turn-helix domain PF553_12270 IPR011701 Major facilitator superfamily PF553_12270 IPR036259 MFS transporter superfamily PF553_12270 IPR020846 Major facilitator superfamily domain PF553_12295 IPR028939 Pyrroline-5-carboxylate reductase, catalytic, N-terminal PF553_12295 IPR036291 NAD(P)-binding domain superfamily PF553_12295 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily PF553_12295 IPR029036 Pyrroline-5-carboxylate reductase, dimerisation domain PF553_12295 IPR000304 Pyrroline-5-carboxylate reductase PF553_12305 IPR012156 Cold shock, CspA PF553_12305 IPR011129 Cold shock domain PF553_12305 IPR019844 Cold-shock (CSD) domain PF553_12305 IPR002059 Cold-shock protein, DNA-binding PF553_12305 IPR012340 Nucleic acid-binding, OB-fold PF553_12310 IPR001123 Amino acid exporter protein, LeuE-type PF553_12340 IPR003753 Exonuclease VII, large subunit PF553_12340 IPR020579 Exonuclease VII, large subunit, C-terminal PF553_12340 IPR025824 OB-fold nucleic acid binding domain PF553_12375 IPR015358 Transcription regulator MerR, DNA binding PF553_12375 IPR011789 Cu(I)-responsive transcriptional regulator PF553_12375 IPR009061 Putative DNA-binding domain superfamily PF553_12375 IPR000551 MerR-type HTH domain PF553_12380 IPR017969 Heavy-metal-associated, conserved site PF553_12380 IPR001757 P-type ATPase PF553_12380 IPR027256 P-type ATPase, subfamily IB PF553_12380 IPR036163 Heavy metal-associated domain superfamily PF553_12380 IPR023299 P-type ATPase, cytoplasmic domain N PF553_12380 IPR018303 P-type ATPase, phosphorylation site PF553_12380 IPR023298 P-type ATPase, transmembrane domain superfamily PF553_12380 IPR008250 P-type ATPase, A domain superfamily PF553_12380 IPR036412 HAD-like superfamily PF553_12380 IPR023214 HAD superfamily PF553_12380 IPR006121 Heavy metal-associated domain, HMA PF553_12380 IPR006122 Heavy metal-associated domain, copper ion-binding PF553_12390 IPR000847 Transcription regulator HTH, LysR PF553_12390 IPR005119 LysR, substrate-binding PF553_12390 IPR036390 Winged helix DNA-binding domain superfamily PF553_12390 IPR036388 Winged helix-like DNA-binding domain superfamily PF553_12400 IPR015881 Aromatic-ring-hydroxylating dioxygenase, 2Fe-2S-binding site PF553_12400 IPR036922 Rieske [2Fe-2S] iron-sulphur domain superfamily PF553_12400 IPR001663 Aromatic-ring-hydroxylating dioxygenase, alpha subunit PF553_12400 IPR017639 Benzoate 1,2-dioxygenase, large subunit PF553_12400 IPR015879 Aromatic-ring-hydroxylating dioxygenase, alpha subunit, C-terminal domain PF553_12400 IPR017941 Rieske [2Fe-2S] iron-sulphur domain PF553_12405 IPR017641 Benzoate 1,2-dioxygenase, small subunit PF553_12405 IPR032710 NTF2-like domain superfamily PF553_12405 IPR000391 Ring-hydroxylating dioxygenase beta subunit PF553_12410 IPR008333 Flavoprotein pyridine nucleotide cytochrome reductase-like, FAD-binding domain PF553_12410 IPR012675 Beta-grasp domain superfamily PF553_12410 IPR006058 2Fe-2S ferredoxin, iron-sulphur binding site PF553_12410 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain PF553_12410 IPR036010 2Fe-2S ferredoxin-like superfamily PF553_12410 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase PF553_12410 IPR039261 Ferredoxin-NADP reductase (FNR), nucleotide-binding domain PF553_12410 IPR001433 Oxidoreductase FAD/NAD(P)-binding PF553_12410 IPR017938 Riboflavin synthase-like beta-barrel PF553_12410 IPR017927 FAD-binding domain, ferredoxin reductase-type PF553_12415 IPR036291 NAD(P)-binding domain superfamily PF553_12415 IPR020904 Short-chain dehydrogenase/reductase, conserved site PF553_12415 IPR002347 Short-chain dehydrogenase/reductase SDR PF553_12420 IPR004711 Benzoate transporter PF553_12425 IPR005829 Sugar transporter, conserved site PF553_12425 IPR036259 MFS transporter superfamily PF553_12425 IPR020846 Major facilitator superfamily domain PF553_12425 IPR004746 Major facilitator superfamily, aromatic acid:H+ symporter family PF553_12425 IPR011701 Major facilitator superfamily PF553_12435 IPR013751 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III PF553_12435 IPR013747 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III, C-terminal PF553_12435 IPR004655 3-oxoacyl-[acyl-carrier-protein] synthase 3 PF553_12435 IPR016039 Thiolase-like PF553_12440 IPR014001 Helicase superfamily 1/2, ATP-binding domain PF553_12440 IPR001650 Helicase, C-terminal PF553_12440 IPR007502 Helicase-associated domain PF553_12440 IPR024590 RNA helicase HrpA, C-terminal PF553_12440 IPR011545 DEAD/DEAH box helicase domain PF553_12440 IPR003593 AAA+ ATPase domain PF553_12440 IPR027417 P-loop containing nucleoside triphosphate hydrolase PF553_12440 IPR011709 Domain of unknown function DUF1605 PF553_12440 IPR010222 RNA helicase HrpA PF553_12445 IPR019479 Peroxiredoxin, C-terminal PF553_12445 IPR000866 Alkyl hydroperoxide reductase subunit C/ Thiol specific antioxidant PF553_12445 IPR024706 Peroxiredoxin, AhpC-type PF553_12445 IPR036249 Thioredoxin-like superfamily PF553_12445 IPR013766 Thioredoxin domain PF553_12445 IPR017559 Alkyl hydroperoxide reductase subunit C PF553_12455 IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase PF553_12455 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase PF553_12465 IPR002109 Glutaredoxin PF553_12465 IPR008255 Pyridine nucleotide-disulphide oxidoreductase, class-II, active site PF553_12465 IPR012081 Alkyl hydroperoxide reductase subunit F PF553_12465 IPR012336 Thioredoxin-like fold PF553_12465 IPR036249 Thioredoxin-like superfamily PF553_12465 IPR036188 FAD/NAD(P)-binding domain superfamily PF553_12465 IPR023753 FAD/NAD(P)-binding domain PF553_12475 IPR004046 Glutathione S-transferase, C-terminal PF553_12475 IPR004045 Glutathione S-transferase, N-terminal PF553_12475 IPR036282 Glutathione S-transferase, C-terminal domain superfamily PF553_12475 IPR010987 Glutathione S-transferase, C-terminal-like PF553_12475 IPR036249 Thioredoxin-like superfamily PF553_12485 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase PF553_12485 IPR003358 tRNA (guanine-N-7) methyltransferase, Trmb type PF553_12490 IPR004045 Glutathione S-transferase, N-terminal PF553_12490 IPR036282 Glutathione S-transferase, C-terminal domain superfamily PF553_12490 IPR010987 Glutathione S-transferase, C-terminal-like PF553_12490 IPR004046 Glutathione S-transferase, C-terminal PF553_12490 IPR036249 Thioredoxin-like superfamily PF553_12500 IPR006664 Outer membrane protein, bacterial PF553_12500 IPR039567 Glycine zipper domain PF553_12500 IPR006665 OmpA-like domain PF553_12500 IPR006690 Outer membrane protein, OmpA-like, conserved site PF553_12500 IPR036737 OmpA-like domain superfamily PF553_12505 IPR032466 Metal-dependent hydrolase PF553_12505 IPR011059 Metal-dependent hydrolase, composite domain superfamily PF553_12505 IPR004722 Dihydroorotase PF553_12505 IPR006680 Amidohydrolase-related PF553_12510 IPR006132 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding PF553_12510 IPR006130 Aspartate/ornithine carbamoyltransferase PF553_12510 IPR006131 Aspartate/ornithine carbamoyltransferase, Asp/Orn-binding domain PF553_12510 IPR002082 Aspartate carbamoyltransferase PF553_12510 IPR036901 Aspartate/ornithine carbamoyltransferase superfamily PF553_12520 IPR004114 THUMP domain PF553_12520 IPR002052 DNA methylase, N-6 adenine-specific, conserved site PF553_12520 IPR000241 Putative RNA methylase domain PF553_12520 IPR019614 S-adenosylmethionine-dependent methyltransferase PF553_12520 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase PF553_12520 IPR017244 Ribosomal RNA large subunit methyltransferase K/L PF553_12535 IPR001270 ClpA/B family PF553_12535 IPR003593 AAA+ ATPase domain PF553_12535 IPR003959 ATPase, AAA-type, core PF553_12535 IPR017730 Chaperonin ClpB PF553_12535 IPR019489 Clp ATPase, C-terminal PF553_12535 IPR036628 Clp, N-terminal domain superfamily PF553_12535 IPR004176 Clp, N-terminal PF553_12535 IPR018368 ClpA/B, conserved site 1 PF553_12535 IPR028299 ClpA/B, conserved site 2 PF553_12535 IPR041546 ClpA/ClpB, AAA lid domain PF553_12535 IPR027417 P-loop containing nucleoside triphosphate hydrolase PF553_12550 IPR036102 OsmC/Ohr superfamily PF553_12550 IPR015946 K homology domain-like, alpha/beta PF553_12550 IPR003718 OsmC/Ohr family PF553_12560 IPR018490 Cyclic nucleotide-binding-like PF553_12560 IPR018488 Cyclic nucleotide-binding, conserved site PF553_12560 IPR000595 Cyclic nucleotide-binding domain PF553_12560 IPR012318 Crp-type HTH domain PF553_12560 IPR014710 RmlC-like jelly roll fold PF553_12560 IPR018335 Transcription regulator HTH, Crp-type, conserved site PF553_12560 IPR036388 Winged helix-like DNA-binding domain superfamily PF553_12560 IPR036390 Winged helix DNA-binding domain superfamily PF553_12565 IPR036812 NADP-dependent oxidoreductase domain superfamily PF553_12565 IPR023210 NADP-dependent oxidoreductase domain PF553_12565 IPR020471 Aldo/keto reductase PF553_12580 IPR042111 Adenylosuccinate synthetase, domain 3 PF553_12580 IPR001114 Adenylosuccinate synthetase PF553_12580 IPR027417 P-loop containing nucleoside triphosphate hydrolase PF553_12580 IPR033128 Adenylosuccinate synthase, active site PF553_12580 IPR018220 Adenylosuccinate synthase, GTP-binding site PF553_12580 IPR042109 Adenylosuccinate synthetase, domain 1 PF553_12580 IPR042110 Adenylosuccinate synthetase, domain 2 PF553_12585 IPR041715 Class II Histidinyl-tRNA synthetase (HisRS)-like catalytic core domain PF553_12585 IPR004516 Histidine-tRNA ligase/ATP phosphoribosyltransferase regulatory subunit PF553_12585 IPR004517 ATP phosphoribosyltransferase regulatory subunit PF553_12595 IPR020828 Glyceraldehyde 3-phosphate dehydrogenase, NAD(P) binding domain PF553_12595 IPR036291 NAD(P)-binding domain superfamily PF553_12595 IPR006424 Glyceraldehyde-3-phosphate dehydrogenase, type I PF553_12595 IPR020829 Glyceraldehyde 3-phosphate dehydrogenase, catalytic domain PF553_12595 IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family PF553_12595 IPR020830 Glyceraldehyde 3-phosphate dehydrogenase, active site PF553_12600 IPR012947 Threonyl/alanyl tRNA synthetase, SAD PF553_12600 IPR002318 Alanine-tRNA ligase, class IIc PF553_12600 IPR018162 Alanine-tRNA ligase, class IIc, anti-codon-binding domain superfamily PF553_12600 IPR018165 Alanyl-tRNA synthetase, class IIc, core domain PF553_12600 IPR018164 Alanyl-tRNA synthetase, class IIc, N-terminal PF553_12600 IPR023033 Alanine-tRNA ligase, eukaryota/bacteria PF553_12600 IPR003156 DHHA1 domain PF553_12600 IPR018163 Threonyl/alanyl tRNA synthetase, class II-like, putative editing domain superfamily PF553_12600 IPR009000 Translation protein, beta-barrel domain superfamily PF553_12605 IPR025166 Integrase, DNA-binding domain PF553_12605 IPR002104 Integrase, catalytic domain PF553_12605 IPR038488 Integrase, DNA-binding domain superfamily PF553_12605 IPR010998 Integrase/recombinase, N-terminal PF553_12605 IPR013762 Integrase-like, catalytic domain superfamily PF553_12605 IPR011010 DNA breaking-rejoining enzyme, catalytic core PF553_12610 IPR006197 Peptidase S24, LexA-like PF553_12610 IPR036286 LexA/Signal peptidase-like superfamily PF553_12610 IPR039418 LexA-like PF553_12610 IPR015927 Peptidase S24/S26A/S26B/S26C PF553_12615 IPR001126 UmuC domain PF553_12615 IPR017961 DNA polymerase, Y-family, little finger domain PF553_12615 IPR036775 DNA polymerase, Y-family, little finger domain superfamily PF553_12615 IPR025188 Domain of unknown function DUF4113 PF553_12620 IPR025668 Transposase DDE domain PF553_12675 IPR025668 Transposase DDE domain PF553_12715 IPR002611 IstB-like ATP-binding protein PF553_12715 IPR027417 P-loop containing nucleoside triphosphate hydrolase PF553_12715 IPR001270 ClpA/B family PF553_12715 IPR003593 AAA+ ATPase domain PF553_12715 IPR028350 DNA replication protein DnaC/insertion sequence putative ATP-binding protein PF553_12745 IPR001387 Cro/C1-type helix-turn-helix domain PF553_12745 IPR010982 Lambda repressor-like, DNA-binding domain superfamily PF553_12745 IPR031856 Putative bacterial antitoxin YdaS PF553_12750 IPR036390 Winged helix DNA-binding domain superfamily PF553_12750 IPR015927 Peptidase S24/S26A/S26B/S26C PF553_12750 IPR036388 Winged helix-like DNA-binding domain superfamily PF553_12750 IPR039418 LexA-like PF553_12750 IPR006200 Transcription regulator LexA PF553_12750 IPR036286 LexA/Signal peptidase-like superfamily PF553_12750 IPR006197 Peptidase S24, LexA-like PF553_12750 IPR006199 LexA repressor, DNA-binding domain PF553_12805 IPR041740 Aspartokinase catalytic domain PF553_12805 IPR001048 Aspartate/glutamate/uridylate kinase PF553_12805 IPR005260 Aspartate kinase, monofunctional class PF553_12805 IPR001341 Aspartate kinase PF553_12805 IPR018042 Aspartate kinase, conserved site PF553_12805 IPR027795 CASTOR, ACT domain PF553_12805 IPR036393 Acetylglutamate kinase-like superfamily PF553_12805 IPR002912 ACT domain PF553_12810 IPR003751 Translational regulator CsrA PF553_12810 IPR036107 Carbon storage regulator superfamily PF553_12815 IPR036397 Ribonuclease H superfamily PF553_12815 IPR012337 Ribonuclease H-like superfamily PF553_12815 IPR022898 Ribonuclease HII PF553_12815 IPR024567 Ribonuclease HII/HIII domain PF553_12815 IPR001352 Ribonuclease HII/HIII PF553_12825 IPR011577 Cytochrome b561, bacterial/Ni-hydrogenase PF553_12825 IPR016174 Di-haem cytochrome, transmembrane PF553_12830 IPR001365 Adenosine/AMP deaminase domain PF553_12830 IPR028892 Adenine deaminase type 2 PF553_12830 IPR006330 Adenosine/adenine deaminase PF553_12830 IPR032466 Metal-dependent hydrolase PF553_12835 IPR006043 Xanthine/uracil/vitamin C permease PF553_12835 IPR026033 Azaguanine-like transporters PF553_12845 IPR036188 FAD/NAD(P)-binding domain superfamily PF553_12845 IPR020946 Flavin monooxygenase-like PF553_12850 IPR002347 Short-chain dehydrogenase/reductase SDR PF553_12850 IPR020904 Short-chain dehydrogenase/reductase, conserved site PF553_12850 IPR036291 NAD(P)-binding domain superfamily PF553_12860 IPR012093 Pirin PF553_12860 IPR003829 Pirin, N-terminal domain PF553_12860 IPR041602 Quercetin 2,3-dioxygenase, C-terminal cupin domain PF553_12860 IPR011051 RmlC-like cupin domain superfamily PF553_12860 IPR014710 RmlC-like jelly roll fold PF553_12865 IPR036271 Tetracyclin repressor-like, C-terminal domain superfamily PF553_12865 IPR023772 DNA-binding HTH domain, TetR-type, conserved site PF553_12865 IPR009057 Homeobox-like domain superfamily PF553_12865 IPR001647 DNA-binding HTH domain, TetR-type PF553_12865 IPR041490 HTH-type transcriptional repressor KstR2, C-terminal PF553_12875 IPR002347 Short-chain dehydrogenase/reductase SDR PF553_12875 IPR020904 Short-chain dehydrogenase/reductase, conserved site PF553_12875 IPR036291 NAD(P)-binding domain superfamily PF553_12880 IPR020946 Flavin monooxygenase-like PF553_12880 IPR036188 FAD/NAD(P)-binding domain superfamily PF553_12885 IPR011610 S-adenosyl-L-methionine-dependent methyltransferase, putative PF553_12885 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase PF553_12885 IPR007213 Methyltransferase Ppm1/Ppm2/Tcmp PF553_12885 IPR016874 Tetracenomycin polyketide synthesis O-methyltransferase TcmP PF553_12890 IPR032687 HTH-type transcriptional regulator AraC-type, N-terminal PF553_12890 IPR009057 Homeobox-like domain superfamily PF553_12890 IPR018060 DNA binding HTH domain, AraC-type PF553_12895 IPR036188 FAD/NAD(P)-binding domain superfamily PF553_12895 IPR020946 Flavin monooxygenase-like PF553_12900 IPR020904 Short-chain dehydrogenase/reductase, conserved site PF553_12900 IPR036291 NAD(P)-binding domain superfamily PF553_12900 IPR002347 Short-chain dehydrogenase/reductase SDR PF553_12905 IPR002168 Lipase, GDXG, putative histidine active site PF553_12905 IPR013094 Alpha/beta hydrolase fold-3 PF553_12905 IPR029058 Alpha/Beta hydrolase fold PF553_12905 IPR033140 Lipase, GDXG, putative serine active site PF553_12910 IPR007867 Glucose-methanol-choline oxidoreductase, C-terminal PF553_12910 IPR036188 FAD/NAD(P)-binding domain superfamily PF553_12915 IPR005318 Outer membrane porin, bacterial PF553_12915 IPR023614 Porin domain superfamily PF553_12920 IPR004746 Major facilitator superfamily, aromatic acid:H+ symporter family PF553_12920 IPR011701 Major facilitator superfamily PF553_12920 IPR036259 MFS transporter superfamily PF553_12920 IPR020846 Major facilitator superfamily domain PF553_12920 IPR005829 Sugar transporter, conserved site PF553_12925 IPR017850 Alkaline-phosphatase-like, core domain superfamily PF553_12925 IPR024607 Sulfatase, conserved site PF553_12925 IPR000917 Sulfatase, N-terminal PF553_12930 IPR016187 C-type lectin fold PF553_12930 IPR042095 Sulfatase-modifying factor enzyme superfamily PF553_12930 IPR005532 Sulfatase-modifying factor enzyme PF553_12940 IPR017941 Rieske [2Fe-2S] iron-sulphur domain PF553_12940 IPR036922 Rieske [2Fe-2S] iron-sulphur domain superfamily PF553_12940 IPR015881 Aromatic-ring-hydroxylating dioxygenase, 2Fe-2S-binding site PF553_12945 IPR001433 Oxidoreductase FAD/NAD(P)-binding PF553_12945 IPR000951 Phthalate dioxygenase reductase PF553_12945 IPR039261 Ferredoxin-NADP reductase (FNR), nucleotide-binding domain PF553_12945 IPR017938 Riboflavin synthase-like beta-barrel PF553_12945 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain PF553_12945 IPR017927 FAD-binding domain, ferredoxin reductase-type PF553_12945 IPR012675 Beta-grasp domain superfamily PF553_12945 IPR006058 2Fe-2S ferredoxin, iron-sulphur binding site PF553_12945 IPR036010 2Fe-2S ferredoxin-like superfamily PF553_12960 IPR011701 Major facilitator superfamily PF553_12960 IPR020846 Major facilitator superfamily domain PF553_12960 IPR036259 MFS transporter superfamily PF553_12960 IPR005829 Sugar transporter, conserved site PF553_12965 IPR018376 Enoyl-CoA hydratase/isomerase, conserved site PF553_12965 IPR001753 Enoyl-CoA hydratase/isomerase PF553_12965 IPR029045 ClpP/crotonase-like domain superfamily PF553_12970 IPR015590 Aldehyde dehydrogenase domain PF553_12970 IPR016163 Aldehyde dehydrogenase, C-terminal PF553_12970 IPR016161 Aldehyde/histidinol dehydrogenase PF553_12970 IPR029510 Aldehyde dehydrogenase, glutamic acid active site PF553_12970 IPR016162 Aldehyde dehydrogenase, N-terminal PF553_12980 IPR006091 Acyl-CoA oxidase/dehydrogenase, central domain PF553_12980 IPR036250 Acyl-CoA dehydrogenase-like, C-terminal PF553_12980 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal PF553_12980 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal PF553_12980 IPR006089 Acyl-CoA dehydrogenase, conserved site PF553_12980 IPR037069 Acyl-CoA dehydrogenase/oxidase, N-terminal domain superfamily PF553_12980 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily PF553_12985 IPR023614 Porin domain superfamily PF553_12985 IPR005318 Outer membrane porin, bacterial PF553_12990 IPR020915 Uncharacterised protein family UPF0311 PF553_13000 IPR029058 Alpha/Beta hydrolase fold PF553_13000 IPR011118 Tannase/feruloyl esterase PF553_13005 IPR011711 GntR, C-terminal PF553_13005 IPR036390 Winged helix DNA-binding domain superfamily PF553_13005 IPR008920 Transcription regulator FadR/GntR, C-terminal PF553_13005 IPR000524 Transcription regulator HTH, GntR PF553_13005 IPR036388 Winged helix-like DNA-binding domain superfamily PF553_13010 IPR015590 Aldehyde dehydrogenase domain PF553_13010 IPR016161 Aldehyde/histidinol dehydrogenase PF553_13010 IPR016163 Aldehyde dehydrogenase, C-terminal PF553_13010 IPR016162 Aldehyde dehydrogenase, N-terminal PF553_13015 IPR017655 5-dehydro-4-deoxyglucarate dehydratase PF553_13015 IPR002220 DapA-like PF553_13015 IPR013785 Aldolase-type TIM barrel PF553_13020 IPR036849 Enolase-like, C-terminal domain superfamily PF553_13020 IPR029017 Enolase-like, N-terminal PF553_13020 IPR029065 Enolase C-terminal domain-like PF553_13020 IPR013342 Mandelate racemase/muconate lactonizing enzyme, C-terminal PF553_13020 IPR034593 Mandelate racemase-like PF553_13020 IPR034598 D-Glucarate dehydratase-like PF553_13020 IPR017653 Glucarate dehydratase PF553_13025 IPR020846 Major facilitator superfamily domain PF553_13025 IPR000849 Sugar phosphate transporter PF553_13025 IPR036259 MFS transporter superfamily PF553_13025 IPR011701 Major facilitator superfamily PF553_13030 IPR013974 SAF domain PF553_13030 IPR032893 Galactarate dehydratase (L-threo-forming) GarD, Enterobacteriaceae PF553_13030 IPR017654 Galactarate dehydratase GarD-like PF553_13030 IPR007392 D-galactarate/Altronate dehydratase, C-terminal PF553_13035 IPR000620 EamA domain PF553_13040 IPR009057 Homeobox-like domain superfamily PF553_13040 IPR032687 HTH-type transcriptional regulator AraC-type, N-terminal PF553_13040 IPR018060 DNA binding HTH domain, AraC-type PF553_13040 IPR020449 Transcription regulator HTH, AraC- type PF553_13045 IPR015590 Aldehyde dehydrogenase domain PF553_13045 IPR029510 Aldehyde dehydrogenase, glutamic acid active site PF553_13045 IPR016163 Aldehyde dehydrogenase, C-terminal PF553_13045 IPR016161 Aldehyde/histidinol dehydrogenase PF553_13045 IPR016162 Aldehyde dehydrogenase, N-terminal PF553_13045 IPR012394 Aldehyde dehydrogenase NAD(P)-dependent PF553_13050 IPR004840 Amino acid permease, conserved site PF553_13050 IPR004841 Amino acid permease/ SLC12A domain PF553_13055 IPR017650 Arginine N-succinyltransferase PF553_13055 IPR016181 Acyl-CoA N-acyltransferase PF553_13055 IPR007041 Arginine N-succinyltransferase AstA/AruG PF553_13060 IPR015424 Pyridoxal phosphate-dependent transferase PF553_13060 IPR015421 Pyridoxal phosphate-dependent transferase, major domain PF553_13060 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 PF553_13060 IPR017652 Acetyl/Succinylornithine transaminase family, bacteria PF553_13060 IPR004636 Acetylornithine/Succinylornithine transaminase family PF553_13060 IPR005814 Aminotransferase class-III PF553_13060 IPR026330 Succinylornithine transaminase PF553_13070 IPR015590 Aldehyde dehydrogenase domain PF553_13070 IPR016162 Aldehyde dehydrogenase, N-terminal PF553_13070 IPR017749 1-pyrroline dehydrogenase PF553_13070 IPR016163 Aldehyde dehydrogenase, C-terminal PF553_13070 IPR016161 Aldehyde/histidinol dehydrogenase PF553_13070 IPR015657 Aminobutyraldehyde dehydrogenase PF553_13070 IPR029510 Aldehyde dehydrogenase, glutamic acid active site PF553_13080 IPR011711 GntR, C-terminal PF553_13080 IPR008920 Transcription regulator FadR/GntR, C-terminal PF553_13080 IPR000524 Transcription regulator HTH, GntR PF553_13080 IPR036388 Winged helix-like DNA-binding domain superfamily PF553_13080 IPR036390 Winged helix DNA-binding domain superfamily PF553_13090 IPR004841 Amino acid permease/ SLC12A domain PF553_13095 IPR006076 FAD dependent oxidoreductase PF553_13095 IPR036188 FAD/NAD(P)-binding domain superfamily PF553_13095 IPR012727 Glycine oxidase ThiO PF553_13100 IPR004840 Amino acid permease, conserved site PF553_13100 IPR004841 Amino acid permease/ SLC12A domain PF553_13110 IPR008517 Protein of unknown function DUF799 PF553_13120 IPR005534 Curli production assembly/transport component CsgG PF553_13145 IPR010295 Protein of unknown function DUF898 PF553_13160 IPR013785 Aldolase-type TIM barrel PF553_13160 IPR001155 NADH:flavin oxidoreductase/NADH oxidase, N-terminal PF553_13160 IPR023753 FAD/NAD(P)-binding domain PF553_13160 IPR036188 FAD/NAD(P)-binding domain superfamily PF553_13165 IPR023437 Argininosuccinate synthase, type 2 subfamily PF553_13165 IPR001518 Argininosuccinate synthase PF553_13165 IPR018223 Argininosuccinate synthase, conserved site PF553_13165 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold PF553_13165 IPR024073 Argininosuccinate synthetase mutimerisation domain, C-terminal tail PF553_13165 IPR023434 Argininosuccinate synthase, type 1 subfamily PF553_13165 IPR024074 Argininosuccinate synthetase, catalytic/multimerisation domain body PF553_13185 IPR002195 Dihydroorotase, conserved site PF553_13185 IPR006680 Amidohydrolase-related PF553_13185 IPR004721 Dihydroorotase homodimeric type PF553_13185 IPR032466 Metal-dependent hydrolase PF553_13190 IPR036397 Ribonuclease H superfamily PF553_13190 IPR012337 Ribonuclease H-like superfamily PF553_13190 IPR005987 Ribonuclease T PF553_13190 IPR013520 Exonuclease, RNase T/DNA polymerase III PF553_13200 IPR010105 TonB-dependent siderophore receptor PF553_13200 IPR037066 TonB-dependent receptor, plug domain superfamily PF553_13200 IPR012910 TonB-dependent receptor, plug domain PF553_13200 IPR000531 TonB-dependent receptor-like, beta-barrel PF553_13200 IPR036942 TonB-dependent receptor-like, beta-barrel domain superfamily PF553_13200 IPR039423 TonB-dependent receptor-like PF553_13205 IPR001155 NADH:flavin oxidoreductase/NADH oxidase, N-terminal PF553_13205 IPR023753 FAD/NAD(P)-binding domain PF553_13205 IPR036188 FAD/NAD(P)-binding domain superfamily PF553_13205 IPR013785 Aldolase-type TIM barrel PF553_13210 IPR017871 ABC transporter, conserved site PF553_13210 IPR003593 AAA+ ATPase domain PF553_13210 IPR003439 ABC transporter-like PF553_13210 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal PF553_13210 IPR027417 P-loop containing nucleoside triphosphate hydrolase PF553_13215 IPR025966 Oligopeptide transport permease C-like, N-terminal domain PF553_13215 IPR035906 MetI-like superfamily PF553_13215 IPR000515 ABC transporter type 1, transmembrane domain MetI-like PF553_13220 IPR035906 MetI-like superfamily PF553_13220 IPR000515 ABC transporter type 1, transmembrane domain MetI-like PF553_13225 IPR000914 Solute-binding protein family 5 domain PF553_13225 IPR039424 Solute-binding protein family 5 PF553_13225 IPR030678 Peptide/nickel binding protein, MppA-type PF553_13230 IPR036779 LysM domain superfamily PF553_13230 IPR018392 LysM domain PF553_13230 IPR008258 Transglycosylase SLT domain 1 PF553_13230 IPR023346 Lysozyme-like domain superfamily PF553_13230 IPR036779 LysM domain superfamily PF553_13230 IPR000189 Prokaryotic transglycosylase, active site PF553_13230 IPR018392 LysM domain PF553_13230 IPR008258 Transglycosylase SLT domain 1 PF553_13230 IPR000189 Prokaryotic transglycosylase, active site PF553_13230 IPR023346 Lysozyme-like domain superfamily PF553_13235 IPR006054 DNA polymerase III epsilon subunit, exonuclease domain PF553_13235 IPR006309 DNA polymerase 3, epsilon subunit PF553_13235 IPR013520 Exonuclease, RNase T/DNA polymerase III PF553_13235 IPR012337 Ribonuclease H-like superfamily PF553_13235 IPR036397 Ribonuclease H superfamily PF553_13245 IPR015376 Zinc ribbon, NADH pyrophosphatase PF553_13245 IPR015797 NUDIX hydrolase-like domain superfamily PF553_13245 IPR020084 NUDIX hydrolase, conserved site PF553_13245 IPR000086 NUDIX hydrolase domain PF553_13245 IPR022925 NADH pyrophosphatase NudC PF553_13255 IPR014004 Transport-associated and nodulation domain, bacteria PF553_13255 IPR007055 BON domain PF553_13260 IPR011856 tRNA endonuclease-like domain superfamily PF553_13260 IPR003509 Uncharacterised protein family UPF0102 PF553_13260 IPR011335 Restriction endonuclease type II-like PF553_13265 IPR000878 Tetrapyrrole methylase PF553_13265 IPR035996 Tetrapyrrole methylase superfamily PF553_13265 IPR014776 Tetrapyrrole methylase, subdomain 2 PF553_13265 IPR008189 rRNA small subunit methyltransferase I PF553_13265 IPR018063 SAM-dependent methyltransferase RsmI, conserved site PF553_13265 IPR014777 Tetrapyrrole methylase, subdomain 1 PF553_13275 IPR017685 HTH-type transcriptional regulator ArgP PF553_13275 IPR023490 HTH-type transcriptional regulator ArgP, Gammaproteobacteria PF553_13275 IPR005119 LysR, substrate-binding PF553_13275 IPR000847 Transcription regulator HTH, LysR PF553_13275 IPR036390 Winged helix DNA-binding domain superfamily PF553_13275 IPR036388 Winged helix-like DNA-binding domain superfamily PF553_13280 IPR023445 Arginine exporter protein ArgO, enterobacteria PF553_13280 IPR001123 Amino acid exporter protein, LeuE-type PF553_13280 IPR004777 L-lysine exporter/arginine exporter PF553_13290 IPR009061 Putative DNA-binding domain superfamily PF553_13290 IPR011794 Hg(II)-responsive transcriptional regulator PF553_13290 IPR000551 MerR-type HTH domain PF553_13300 IPR002938 FAD-binding domain PF553_13300 IPR036188 FAD/NAD(P)-binding domain superfamily PF553_13300 IPR018168 Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6, conserved site PF553_13300 IPR010971 Ubiquinone biosynthesis hydroxylase UbiH/COQ6 PF553_13305 IPR011295 2-polyprenyl-6-methoxyphenol 4-hydroxylase PF553_13305 IPR010971 Ubiquinone biosynthesis hydroxylase UbiH/COQ6 PF553_13305 IPR002938 FAD-binding domain PF553_13305 IPR018168 Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6, conserved site PF553_13305 IPR036188 FAD/NAD(P)-binding domain superfamily PF553_13310 IPR001131 Peptidase M24B, X-Pro dipeptidase/aminopeptidase P, conserved site PF553_13310 IPR007865 Aminopeptidase P, N-terminal PF553_13310 IPR029149 Creatinase/Aminopeptidase P/Spt16, N-terminal PF553_13310 IPR036005 Creatinase/aminopeptidase-like PF553_13310 IPR000994 Peptidase M24 PF553_13310 IPR001714 Peptidase M24, methionine aminopeptidase PF553_13345 IPR017850 Alkaline-phosphatase-like, core domain superfamily PF553_13345 IPR000917 Sulfatase, N-terminal PF553_13345 IPR040423 Phosphoethanolamine transferase PF553_13345 IPR012549 Phosphoethanolamine transferase, N-terminal PF553_13410 IPR005569 Arc-like DNA binding domain PF553_13410 IPR013321 Arc-type ribbon-helix-helix PF553_13410 IPR010985 Ribbon-helix-helix PF553_13415 IPR009057 Homeobox-like domain superfamily PF553_13425 IPR039552 Transposase IS66, C-terminal PF553_13425 IPR004291 Transposase, IS66 PF553_13425 IPR024463 Transposase TnpC, homeodomain PF553_13425 IPR024474 Zinc-finger binding domain of transposase IS66 PF553_13615 IPR003497 BRO N-terminal domain PF553_13615 IPR018876 Bacteriophage P22, antirepressor protein, C-terminal PF553_13770 IPR029062 Class I glutamine amidotransferase-like PF553_13770 IPR017926 Glutamine amidotransferase PF553_13770 IPR006221 Anthranilate synthase/para-aminobenzoate synthase like domain PF553_13775 IPR042097 Aminopeptidase N-like , N-terminal PF553_13775 IPR024571 ERAP1-like C-terminal domain PF553_13775 IPR034016 Aminopeptidase N-type PF553_13775 IPR001930 Peptidase M1, alanine aminopeptidase/leukotriene A4 hydrolase PF553_13775 IPR014782 Peptidase M1, membrane alanine aminopeptidase PF553_13780 IPR010101 TonB-dependent vitamin B12 transporter BtuB PF553_13780 IPR039426 Vitamin B12 transporter BtuB-like PF553_13780 IPR012910 TonB-dependent receptor, plug domain PF553_13780 IPR037066 TonB-dependent receptor, plug domain superfamily PF553_13780 IPR000531 TonB-dependent receptor-like, beta-barrel PF553_13780 IPR010916 TonB box, conserved site PF553_13780 IPR036942 TonB-dependent receptor-like, beta-barrel domain superfamily PF553_13780 IPR010917 TonB-dependent receptor, conserved site PF553_13785 IPR005940 Anthranilate phosphoribosyl transferase PF553_13785 IPR000312 Glycosyl transferase, family 3 PF553_13785 IPR017459 Glycosyl transferase family 3, N-terminal domain PF553_13785 IPR036320 Glycosyl transferase family 3, N-terminal domain superfamily PF553_13785 IPR035902 Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain superfamily PF553_13790 IPR013785 Aldolase-type TIM barrel PF553_13790 IPR013798 Indole-3-glycerol phosphate synthase PF553_13790 IPR001468 Indole-3-glycerol phosphate synthase, conserved site PF553_13790 IPR011060 Ribulose-phosphate binding barrel PF553_13805 IPR036856 Aldehyde oxidase/xanthine dehydrogenase, a/b hammerhead superfamily PF553_13805 IPR008274 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding PF553_13805 IPR037165 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding domain superfamily PF553_13805 IPR000674 Aldehyde oxidase/xanthine dehydrogenase, a/b hammerhead PF553_13810 IPR006058 2Fe-2S ferredoxin, iron-sulphur binding site PF553_13810 IPR012675 Beta-grasp domain superfamily PF553_13810 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain PF553_13810 IPR036884 [2Fe-2S]-binding domain superfamily PF553_13810 IPR002888 [2Fe-2S]-binding PF553_13810 IPR036010 2Fe-2S ferredoxin-like superfamily PF553_13815 IPR001474 GTP cyclohydrolase I PF553_13815 IPR018234 GTP cyclohydrolase I, conserved site PF553_13815 IPR020602 GTP cyclohydrolase I domain PF553_13825 IPR012338 Beta-lactamase/transpeptidase-like PF553_13825 IPR001466 Beta-lactamase-related PF553_13825 IPR001586 Beta-lactamase, class-C active site PF553_13835 IPR039552 Transposase IS66, C-terminal PF553_13835 IPR004291 Transposase, IS66 PF553_13835 IPR024463 Transposase TnpC, homeodomain PF553_13835 IPR024474 Zinc-finger binding domain of transposase IS66 PF553_13845 IPR009057 Homeobox-like domain superfamily PF553_13860 IPR008535 Protein of unknown function DUF817 PF553_13865 IPR038071 UROD/MetE-like superfamily PF553_13865 IPR000257 Uroporphyrinogen decarboxylase (URO-D) PF553_13865 IPR006361 Uroporphyrinogen decarboxylase HemE PF553_13875 IPR015890 Chorismate-utilising enzyme, C-terminal PF553_13875 IPR005801 ADC synthase PF553_13875 IPR004561 Isochorismate synthase PF553_13880 IPR003542 Enterobactin synthetase-like, component D PF553_13880 IPR041354 4'-phosphopantetheinyl transferase, N-terminal domain PF553_13880 IPR037143 4'-phosphopantetheinyl transferase domain superfamily PF553_13880 IPR008278 4'-phosphopantetheinyl transferase domain PF553_13885 IPR012223 Thioesterase type II, NRPS/PKS/S-FAS PF553_13885 IPR001031 Thioesterase PF553_13885 IPR029058 Alpha/Beta hydrolase fold PF553_13890 IPR003593 AAA+ ATPase domain PF553_13890 IPR027417 P-loop containing nucleoside triphosphate hydrolase PF553_13890 IPR017871 ABC transporter, conserved site PF553_13890 IPR003439 ABC transporter-like PF553_13890 IPR036640 ABC transporter type 1, transmembrane domain superfamily PF553_13890 IPR011527 ABC transporter type 1, transmembrane domain PF553_13895 IPR027417 P-loop containing nucleoside triphosphate hydrolase PF553_13895 IPR003439 ABC transporter-like PF553_13895 IPR036640 ABC transporter type 1, transmembrane domain superfamily PF553_13895 IPR014223 ABC transporter, CydDC cysteine exporter (CydDC-E) family, permease/ATP-binding protein CydC PF553_13895 IPR003593 AAA+ ATPase domain PF553_13895 IPR011527 ABC transporter type 1, transmembrane domain PF553_13900 IPR015424 Pyridoxal phosphate-dependent transferase PF553_13900 IPR023523 Histidine decarboxylase, bacteria PF553_13900 IPR021115 Pyridoxal-phosphate binding site PF553_13900 IPR015421 Pyridoxal phosphate-dependent transferase, major domain PF553_13900 IPR002129 Pyridoxal phosphate-dependent decarboxylase PF553_13905 IPR036380 Isochorismatase-like superfamily PF553_13905 IPR000868 Isochorismatase-like PF553_13905 IPR016291 Isochorismatase PF553_13905 IPR009081 Phosphopantetheine binding ACP domain PF553_13905 IPR036736 ACP-like superfamily PF553_13910 IPR000873 AMP-dependent synthetase/ligase PF553_13910 IPR042099 AMP-dependent synthetase-like superfamily PF553_13910 IPR011963 2,3-dihydroxybenzoate-AMP ligase PF553_13910 IPR025110 AMP-binding enzyme, C-terminal domain PF553_13910 IPR020845 AMP-binding, conserved site PF553_13915 IPR000873 AMP-dependent synthetase/ligase PF553_13915 IPR020845 AMP-binding, conserved site PF553_13915 IPR010071 Amino acid adenylation domain PF553_13915 IPR029058 Alpha/Beta hydrolase fold PF553_13915 IPR006162 Phosphopantetheine attachment site PF553_13915 IPR009081 Phosphopantetheine binding ACP domain PF553_13915 IPR020806 Polyketide synthase, phosphopantetheine-binding domain PF553_13915 IPR001242 Condensation domain PF553_13915 IPR023213 Chloramphenicol acetyltransferase-like domain superfamily PF553_13915 IPR042099 AMP-dependent synthetase-like superfamily PF553_13915 IPR036736 ACP-like superfamily PF553_13920 IPR025700 L-lysine 6-monooxygenase/L-ornithine 5-monooxygenase PF553_13920 IPR031043 Putative histamine N-monooxygenase PF553_13920 IPR036188 FAD/NAD(P)-binding domain superfamily PF553_13925 IPR030149 TonB-dependent siderophore receptor FcuA/FatA PF553_13925 IPR012910 TonB-dependent receptor, plug domain PF553_13925 IPR010105 TonB-dependent siderophore receptor PF553_13925 IPR039423 TonB-dependent receptor-like PF553_13925 IPR037066 TonB-dependent receptor, plug domain superfamily PF553_13925 IPR036942 TonB-dependent receptor-like, beta-barrel domain superfamily PF553_13925 IPR010916 TonB box, conserved site PF553_13925 IPR000531 TonB-dependent receptor-like, beta-barrel PF553_13925 IPR010917 TonB-dependent receptor, conserved site PF553_13930 IPR002491 ABC transporter periplasmic binding domain PF553_13930 IPR033870 FatB domain PF553_13935 IPR017871 ABC transporter, conserved site PF553_13935 IPR027417 P-loop containing nucleoside triphosphate hydrolase PF553_13935 IPR003593 AAA+ ATPase domain PF553_13935 IPR003439 ABC transporter-like PF553_13940 IPR000522 ABC transporter, permease protein, BtuC-like PF553_13940 IPR037294 ABC transporter, BtuC-like PF553_13945 IPR000522 ABC transporter, permease protein, BtuC-like PF553_13945 IPR037294 ABC transporter, BtuC-like PF553_13950 IPR036736 ACP-like superfamily PF553_13950 IPR025110 AMP-binding enzyme, C-terminal domain PF553_13950 IPR020845 AMP-binding, conserved site PF553_13950 IPR000873 AMP-dependent synthetase/ligase PF553_13950 IPR042099 AMP-dependent synthetase-like superfamily PF553_13950 IPR029058 Alpha/Beta hydrolase fold PF553_13950 IPR001242 Condensation domain PF553_13950 IPR020806 Polyketide synthase, phosphopantetheine-binding domain PF553_13950 IPR020802 Polyketide synthase, thioesterase domain PF553_13950 IPR001031 Thioesterase PF553_13950 IPR023213 Chloramphenicol acetyltransferase-like domain superfamily PF553_13950 IPR010071 Amino acid adenylation domain PF553_13950 IPR009081 Phosphopantetheine binding ACP domain PF553_13955 IPR010060 Non-ribosomal peptide synthase PF553_13955 IPR010071 Amino acid adenylation domain PF553_13955 IPR001242 Condensation domain PF553_13955 IPR025110 AMP-binding enzyme, C-terminal domain PF553_13955 IPR020845 AMP-binding, conserved site PF553_13955 IPR000873 AMP-dependent synthetase/ligase PF553_13955 IPR036736 ACP-like superfamily PF553_13955 IPR023213 Chloramphenicol acetyltransferase-like domain superfamily PF553_13955 IPR006162 Phosphopantetheine attachment site PF553_13955 IPR009081 Phosphopantetheine binding ACP domain PF553_13955 IPR020806 Polyketide synthase, phosphopantetheine-binding domain PF553_13955 IPR042099 AMP-dependent synthetase-like superfamily PF553_13965 IPR013559 YheO-like PF553_13965 IPR039445 Transcriptional regulator DauR-like, HTH domain PF553_13965 IPR039446 Transcriptional regulator DauR-like PF553_13970 IPR036052 Tryptophan synthase beta subunit-like PLP-dependent enzyme PF553_13970 IPR000634 Serine/threonine dehydratase, pyridoxal-phosphate-binding site PF553_13970 IPR001926 Pyridoxal-phosphate dependent enzyme PF553_13975 IPR012093 Pirin PF553_13975 IPR014710 RmlC-like jelly roll fold PF553_13975 IPR041602 Quercetin 2,3-dioxygenase, C-terminal cupin domain PF553_13975 IPR003829 Pirin, N-terminal domain PF553_13975 IPR011051 RmlC-like cupin domain superfamily PF553_13995 IPR036271 Tetracyclin repressor-like, C-terminal domain superfamily PF553_13995 IPR001647 DNA-binding HTH domain, TetR-type PF553_13995 IPR009057 Homeobox-like domain superfamily PF553_14005 IPR039552 Transposase IS66, C-terminal PF553_14005 IPR004291 Transposase, IS66 PF553_14005 IPR024463 Transposase TnpC, homeodomain PF553_14005 IPR024474 Zinc-finger binding domain of transposase IS66 PF553_14015 IPR009057 Homeobox-like domain superfamily PF553_14025 IPR034620 cis-3-Hydroxy-L-proline dehydratase PF553_14025 IPR036849 Enolase-like, C-terminal domain superfamily PF553_14025 IPR029065 Enolase C-terminal domain-like PF553_14025 IPR013342 Mandelate racemase/muconate lactonizing enzyme, C-terminal PF553_14025 IPR013341 Mandelate racemase/muconate lactonizing enzyme, N-terminal domain PF553_14025 IPR029017 Enolase-like, N-terminal PF553_14030 IPR005829 Sugar transporter, conserved site PF553_14030 IPR003663 Sugar/inositol transporter PF553_14030 IPR036259 MFS transporter superfamily PF553_14030 IPR005828 Major facilitator, sugar transporter-like PF553_14030 IPR020846 Major facilitator superfamily domain PF553_14035 IPR036165 YefM-like superfamily PF553_14035 IPR006442 Type II toxin-antitoxin system, antitoxin Phd/YefM PF553_14045 IPR000620 EamA domain PF553_14065 IPR006076 FAD dependent oxidoreductase PF553_14065 IPR036188 FAD/NAD(P)-binding domain superfamily PF553_14065 IPR008471 MnmC-like methyltransferase PF553_14065 IPR023032 tRNA 5-methylaminomethyl-2-thiouridine biosynthesis bifunctional protein MnmC PF553_14065 IPR017610 tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal PF553_14070 IPR041364 Rubredoxin binding domain PF553_14070 IPR023753 FAD/NAD(P)-binding domain PF553_14070 IPR036188 FAD/NAD(P)-binding domain superfamily PF553_14080 IPR016160 Aldehyde dehydrogenase, cysteine active site PF553_14080 IPR016161 Aldehyde/histidinol dehydrogenase PF553_14080 IPR016163 Aldehyde dehydrogenase, C-terminal PF553_14080 IPR015590 Aldehyde dehydrogenase domain PF553_14080 IPR029510 Aldehyde dehydrogenase, glutamic acid active site PF553_14080 IPR016162 Aldehyde dehydrogenase, N-terminal PF553_14080 IPR011264 Betaine aldehyde dehydrogenase PF553_14085 IPR017941 Rieske [2Fe-2S] iron-sulphur domain PF553_14085 IPR036922 Rieske [2Fe-2S] iron-sulphur domain superfamily PF553_14085 IPR015881 Aromatic-ring-hydroxylating dioxygenase, 2Fe-2S-binding site PF553_14085 IPR015879 Aromatic-ring-hydroxylating dioxygenase, alpha subunit, C-terminal domain PF553_14085 IPR001663 Aromatic-ring-hydroxylating dioxygenase, alpha subunit PF553_14090 IPR000060 BCCT transporter family PF553_14090 IPR018093 BCCT transporter, conserved site PF553_14095 IPR005829 Sugar transporter, conserved site PF553_14095 IPR036259 MFS transporter superfamily PF553_14095 IPR005828 Major facilitator, sugar transporter-like PF553_14095 IPR020846 Major facilitator superfamily domain PF553_14100 IPR000994 Peptidase M24 PF553_14100 IPR036005 Creatinase/aminopeptidase-like PF553_14100 IPR029149 Creatinase/Aminopeptidase P/Spt16, N-terminal PF553_14105 IPR023663 NADPH dehydrogenase PF553_14105 IPR001155 NADH:flavin oxidoreductase/NADH oxidase, N-terminal PF553_14105 IPR013785 Aldolase-type TIM barrel PF553_14110 IPR005119 LysR, substrate-binding PF553_14110 IPR000847 Transcription regulator HTH, LysR PF553_14110 IPR036390 Winged helix DNA-binding domain superfamily PF553_14110 IPR036388 Winged helix-like DNA-binding domain superfamily PF553_14115 IPR018060 DNA binding HTH domain, AraC-type PF553_14115 IPR032687 HTH-type transcriptional regulator AraC-type, N-terminal PF553_14115 IPR009057 Homeobox-like domain superfamily PF553_14115 IPR020449 Transcription regulator HTH, AraC- type PF553_14120 IPR001509 NAD-dependent epimerase/dehydratase PF553_14120 IPR036291 NAD(P)-binding domain superfamily PF553_14120 IPR017829 Hopanoid-associated sugar epimerase PF553_14130 IPR029058 Alpha/Beta hydrolase fold PF553_14130 IPR000073 Alpha/beta hydrolase fold-1 PF553_14130 IPR000639 Epoxide hydrolase-like PF553_14135 IPR036188 FAD/NAD(P)-binding domain superfamily PF553_14135 IPR020946 Flavin monooxygenase-like PF553_14145 IPR036388 Winged helix-like DNA-binding domain superfamily PF553_14145 IPR005119 LysR, substrate-binding PF553_14145 IPR000847 Transcription regulator HTH, LysR PF553_14145 IPR036390 Winged helix DNA-binding domain superfamily PF553_14150 IPR000868 Isochorismatase-like PF553_14150 IPR036380 Isochorismatase-like superfamily PF553_14175 IPR036291 NAD(P)-binding domain superfamily PF553_14175 IPR002347 Short-chain dehydrogenase/reductase SDR PF553_14200 IPR007423 Selenoprotein, putative PF553_14205 IPR003706 CstA, N-terminal domain PF553_14205 IPR025299 CstA, C-terminal domain PF553_14210 IPR015365 Elongation factor P, C-terminal PF553_14210 IPR008991 Translation protein SH3-like domain superfamily PF553_14210 IPR011768 Translation elongation factor P PF553_14210 IPR012340 Nucleic acid-binding, OB-fold PF553_14210 IPR001059 Translation elongation factor P/YeiP, central PF553_14210 IPR014722 Ribosomal protein L2, domain 2 PF553_14210 IPR020599 Translation elongation factor P/YeiP PF553_14210 IPR013185 Translation elongation factor, KOW-like PF553_14215 IPR007197 Radical SAM PF553_14215 IPR022462 Lysine-2,3-aminomutase-like PF553_14215 IPR013785 Aldolase-type TIM barrel PF553_14215 IPR003739 Lysine-2,3-aminomutase/glutamate 2,3-aminomutase PF553_14225 IPR024744 Putative cyclic diguanylate phosphodiesterase, CSS motif-containing domain PF553_14225 IPR001633 EAL domain PF553_14225 IPR035919 EAL domain superfamily PF553_14230 IPR027491 Ribosomal protein L31 type A PF553_14230 IPR042105 Ribosomal protein L31 superfamily PF553_14230 IPR002150 Ribosomal protein L31 PF553_14230 IPR034704 L28p-like PF553_14235 IPR038770 Sodium/solute symporter superfamily PF553_14235 IPR016833 Putative sodium bile acid cotransporter PF553_14240 IPR004361 Glyoxalase I PF553_14240 IPR018146 Glyoxalase I, conserved site PF553_14240 IPR037523 Vicinal oxygen chelate (VOC) domain PF553_14240 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase PF553_14240 IPR004360 Glyoxalase/fosfomycin resistance/dioxygenase domain PF553_14245 IPR011701 Major facilitator superfamily PF553_14245 IPR020846 Major facilitator superfamily domain PF553_14245 IPR036259 MFS transporter superfamily PF553_14245 IPR004752 AmpG-like permease/Acetyl-coenzyme A transporter 1 PF553_14250 IPR041699 Lon protease, AAA domain PF553_14250 IPR008269 Peptidase S16, Lon proteolytic domain PF553_14250 IPR020568 Ribosomal protein S5 domain 2-type fold PF553_14250 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup PF553_14250 IPR027065 Lon protease PF553_14255 IPR005119 LysR, substrate-binding PF553_14255 IPR000847 Transcription regulator HTH, LysR PF553_14255 IPR036388 Winged helix-like DNA-binding domain superfamily PF553_14255 IPR036390 Winged helix DNA-binding domain superfamily PF553_14260 IPR036779 LysM domain superfamily PF553_14260 IPR018392 LysM domain PF553_14260 IPR016047 Peptidase M23 PF553_14260 IPR011055 Duplicated hybrid motif PF553_14265 IPR002828 Survival protein SurE-like phosphatase/nucleotidase PF553_14265 IPR030048 Survival protein SurE PF553_14265 IPR036523 SurE-like phosphatase/nucleotidase superfamily PF553_14280 IPR012338 Beta-lactamase/transpeptidase-like PF553_14280 IPR015956 Penicillin-binding protein, C-terminal domain superfamily PF553_14280 IPR018044 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A PF553_14280 IPR012907 Peptidase S11, D-Ala-D-Ala carboxypeptidase A, C-terminal PF553_14280 IPR037167 D-Ala-D-Ala carboxypeptidase, C-terminal domain superfamily PF553_14280 IPR001967 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A, N-terminal PF553_14285 IPR001451 Hexapeptide repeat PF553_14285 IPR011004 Trimeric LpxA-like superfamily PF553_14290 IPR000086 NUDIX hydrolase domain PF553_14290 IPR015797 NUDIX hydrolase-like domain superfamily PF553_14290 IPR020476 NUDIX hydrolase PF553_14290 IPR023214 HAD superfamily PF553_14290 IPR006357 HAD-superfamily hydrolase, subfamily IIA PF553_14290 IPR036412 HAD-like superfamily PF553_14290 IPR020084 NUDIX hydrolase, conserved site PF553_14295 IPR023382 Adenine nucleotide alpha hydrolase-like domains PF553_14295 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold PF553_14295 IPR004506 tRNA-specific 2-thiouridylase PF553_14300 IPR007451 High frequency lysogenization protein HflD PF553_14300 IPR035932 HflD-like superfamily PF553_14305 IPR013539 Adenylosuccinate lyase PurB, C-terminal PF553_14305 IPR008948 L-Aspartase-like PF553_14305 IPR020557 Fumarate lyase, conserved site PF553_14305 IPR004769 Adenylosuccinate lyase PF553_14305 IPR024083 Fumarase/histidase, N-terminal PF553_14305 IPR000362 Fumarate lyase family PF553_14305 IPR022761 Fumarate lyase, N-terminal PF553_14320 IPR029045 ClpP/crotonase-like domain superfamily PF553_14320 IPR013703 Peptidase S49, N-terminal proteobacteria PF553_14320 IPR002142 Peptidase S49 PF553_14325 IPR003593 AAA+ ATPase domain PF553_14325 IPR003439 ABC transporter-like PF553_14325 IPR005670 Phosphate transport system permease protein 1 PF553_14325 IPR027417 P-loop containing nucleoside triphosphate hydrolase PF553_14325 IPR017871 ABC transporter, conserved site PF553_14325 IPR015850 ABC transporter, phosphate import, PstB PF553_14330 IPR000515 ABC transporter type 1, transmembrane domain MetI-like PF553_14330 IPR005672 Phosphate transport system permease protein PstA PF553_14330 IPR035906 MetI-like superfamily PF553_14335 IPR000515 ABC transporter type 1, transmembrane domain MetI-like PF553_14335 IPR035906 MetI-like superfamily PF553_14335 IPR011864 Phosphate ABC transporter, permease protein PstC PF553_14340 IPR024370 PBP domain PF553_14340 IPR011862 Phosphate binding protein PF553_14345 IPR004840 Amino acid permease, conserved site PF553_14345 IPR004841 Amino acid permease/ SLC12A domain PF553_14350 IPR012001 Thiamine pyrophosphate enzyme, N-terminal TPP-binding domain PF553_14350 IPR011766 Thiamine pyrophosphate enzyme, C-terminal TPP-binding PF553_14350 IPR012110 Thiamine pyrophosphate (TPP)-dependent enzyme PF553_14350 IPR012000 Thiamine pyrophosphate enzyme, central domain PF553_14350 IPR029061 Thiamin diphosphate-binding fold PF553_14350 IPR029035 DHS-like NAD/FAD-binding domain superfamily PF553_14355 IPR036390 Winged helix DNA-binding domain superfamily PF553_14355 IPR019887 Transcription regulator AsnC/Lrp, ligand binding domain PF553_14355 IPR019885 Transcription regulator HTH, AsnC-type, conserved site PF553_14355 IPR019888 Transcription regulator AsnC-type PF553_14355 IPR011008 Dimeric alpha-beta barrel PF553_14355 IPR000485 AsnC-type HTH domain PF553_14355 IPR011991 ArsR-like helix-turn-helix domain PF553_14355 IPR036388 Winged helix-like DNA-binding domain superfamily PF553_14360 IPR016161 Aldehyde/histidinol dehydrogenase PF553_14360 IPR016163 Aldehyde dehydrogenase, C-terminal PF553_14360 IPR016160 Aldehyde dehydrogenase, cysteine active site PF553_14360 IPR029510 Aldehyde dehydrogenase, glutamic acid active site PF553_14360 IPR016162 Aldehyde dehydrogenase, N-terminal PF553_14360 IPR015590 Aldehyde dehydrogenase domain PF553_14365 IPR015424 Pyridoxal phosphate-dependent transferase PF553_14365 IPR002129 Pyridoxal phosphate-dependent decarboxylase PF553_14365 IPR015421 Pyridoxal phosphate-dependent transferase, major domain PF553_14365 IPR021115 Pyridoxal-phosphate binding site PF553_14370 IPR015421 Pyridoxal phosphate-dependent transferase, major domain PF553_14370 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 PF553_14370 IPR015424 Pyridoxal phosphate-dependent transferase PF553_14370 IPR004637 2,4-diaminobutyrate 4-transaminase PF553_14370 IPR005814 Aminotransferase class-III PF553_14385 IPR003680 Flavodoxin-like fold PF553_14385 IPR029039 Flavoprotein-like superfamily PF553_14390 IPR005804 Fatty acid desaturase domain PF553_14395 IPR036010 2Fe-2S ferredoxin-like superfamily PF553_14395 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain PF553_14395 IPR012675 Beta-grasp domain superfamily PF553_14395 IPR008333 Flavoprotein pyridine nucleotide cytochrome reductase-like, FAD-binding domain PF553_14395 IPR017927 FAD-binding domain, ferredoxin reductase-type PF553_14395 IPR039261 Ferredoxin-NADP reductase (FNR), nucleotide-binding domain PF553_14395 IPR000951 Phthalate dioxygenase reductase PF553_14395 IPR017938 Riboflavin synthase-like beta-barrel PF553_14395 IPR001433 Oxidoreductase FAD/NAD(P)-binding PF553_14400 IPR023764 Transcriptional repressor HTH, FabR PF553_14400 IPR009057 Homeobox-like domain superfamily PF553_14400 IPR001647 DNA-binding HTH domain, TetR-type PF553_14410 IPR000330 SNF2-related, N-terminal domain PF553_14410 IPR040766 RapA, N-terminal Tudor-like domain 2 PF553_14410 IPR040765 RapA, N-terminal Tudor like domain 1 PF553_14410 IPR038718 SNF2-like, N-terminal domain superfamily PF553_14410 IPR001650 Helicase, C-terminal PF553_14410 IPR023949 RNA polymerase-associated protein RapA PF553_14410 IPR027417 P-loop containing nucleoside triphosphate hydrolase PF553_14410 IPR014001 Helicase superfamily 1/2, ATP-binding domain PF553_14410 IPR022737 RNA polymerase recycling, bacterial, C-terminal PF553_14415 IPR020103 Pseudouridine synthase, catalytic domain superfamily PF553_14415 IPR006224 Pseudouridine synthase, RluC/RluD, conserved site PF553_14415 IPR006145 Pseudouridine synthase, RsuA/RluA PF553_14425 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 PF553_14425 IPR015421 Pyridoxal phosphate-dependent transferase, major domain PF553_14425 IPR004639 Tetrapyrrole biosynthesis, glutamate-1-semialdehyde aminotransferase PF553_14425 IPR015424 Pyridoxal phosphate-dependent transferase PF553_14425 IPR005814 Aminotransferase class-III PF553_14430 IPR013785 Aldolase-type TIM barrel PF553_14430 IPR036206 Thiamin phosphate synthase superfamily PF553_14430 IPR022998 Thiamine phosphate synthase/TenI PF553_14430 IPR034291 Thiamine phosphate synthase PF553_14440 IPR009057 Homeobox-like domain superfamily PF553_14450 IPR039552 Transposase IS66, C-terminal PF553_14450 IPR004291 Transposase, IS66 PF553_14450 IPR024463 Transposase TnpC, homeodomain PF553_14450 IPR024474 Zinc-finger binding domain of transposase IS66 PF553_14475 IPR007863 Peptidase M16, C-terminal PF553_14475 IPR011765 Peptidase M16, N-terminal PF553_14475 IPR001431 Peptidase M16, zinc-binding site PF553_14475 IPR011249 Metalloenzyme, LuxS/M16 peptidase-like PF553_14480 IPR003719 Phenazine biosynthesis PhzF protein PF553_14485 IPR001991 Sodium:dicarboxylate symporter PF553_14485 IPR036458 Sodium:dicarboxylate symporter superfamily PF553_14490 IPR036388 Winged helix-like DNA-binding domain superfamily PF553_14490 IPR005119 LysR, substrate-binding PF553_14490 IPR000847 Transcription regulator HTH, LysR PF553_14490 IPR036390 Winged helix DNA-binding domain superfamily PF553_14495 IPR010645 Uncharacterised MFS-type transporter YbfB PF553_14495 IPR036259 MFS transporter superfamily PF553_14515 IPR019818 Isocitrate/isopropylmalate dehydrogenase, conserved site PF553_14515 IPR024084 Isopropylmalate dehydrogenase-like domain PF553_14515 IPR004439 Isocitrate dehydrogenase NADP-dependent, dimeric, prokaryotic PF553_14520 IPR018496 Pseudouridine synthase, RsuA/RluB/E/F, conserved site PF553_14520 IPR000748 Pseudouridine synthase, RsuA/RluB/E/F PF553_14520 IPR042092 Pseudouridine synthase, RsuA/RluB/E/F, catalytic domain PF553_14520 IPR020103 Pseudouridine synthase, catalytic domain superfamily PF553_14520 IPR006145 Pseudouridine synthase, RsuA/RluA PF553_14525 IPR004436 Isocitrate dehydrogenase NADP-dependent, monomeric PF553_14535 IPR012907 Peptidase S11, D-Ala-D-Ala carboxypeptidase A, C-terminal PF553_14535 IPR037167 D-Ala-D-Ala carboxypeptidase, C-terminal domain superfamily PF553_14535 IPR012338 Beta-lactamase/transpeptidase-like PF553_14535 IPR015956 Penicillin-binding protein, C-terminal domain superfamily PF553_14535 IPR001967 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A, N-terminal PF553_14535 IPR018044 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A PF553_14540 IPR023753 FAD/NAD(P)-binding domain PF553_14540 IPR036188 FAD/NAD(P)-binding domain superfamily PF553_14545 IPR001179 FKBP-type peptidyl-prolyl cis-trans isomerase domain PF553_14550 IPR005101 Cryptochrome/DNA photolyase, FAD-binding domain PF553_14550 IPR036134 Cryptochrome/DNA photolyase, FAD-binding domain-like superfamily PF553_14550 IPR018394 Cryptochrome/DNA photolyase class 1, conserved site, C-terminal PF553_14550 IPR006050 DNA photolyase, N-terminal PF553_14550 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold PF553_14550 IPR036155 Cryptochrome/photolyase, N-terminal domain superfamily PF553_14550 IPR002081 Cryptochrome/DNA photolyase class 1 PF553_14565 IPR029044 Nucleotide-diphospho-sugar transferases PF553_14580 IPR029767 UDP-N-acetylglucosamine 2-epimerase WecB-like PF553_14580 IPR003331 UDP-N-acetylglucosamine 2-epimerase domain PF553_14595 IPR004136 Nitronate monooxygenase PF553_14595 IPR013785 Aldolase-type TIM barrel PF553_14600 IPR004652 tRNA-dihydrouridine synthase, TIM-barrel, NifR3 PF553_14600 IPR001269 tRNA-dihydrouridine synthase PF553_14600 IPR018517 tRNA-dihydrouridine synthase, conserved site PF553_14600 IPR032887 tRNA-dihydrouridine synthase B PF553_14600 IPR035587 DUS-like, FMN-binding domain PF553_14600 IPR013785 Aldolase-type TIM barrel PF553_14600 IPR024036 tRNA-dihydrouridine synthase, putative, C-terminal PF553_14605 IPR011673 Protein of unknown function DUF1615 PF553_14615 IPR036974 PUA domain superfamily PF553_14615 IPR005715 Glutamate 5-kinase/delta-1-pyrroline-5-carboxylate synthase PF553_14615 IPR002478 PUA domain PF553_14615 IPR011529 Glutamate 5-kinase PF553_14615 IPR019797 Glutamate 5-kinase, conserved site PF553_14615 IPR001048 Aspartate/glutamate/uridylate kinase PF553_14615 IPR036393 Acetylglutamate kinase-like superfamily PF553_14615 IPR015947 PUA-like superfamily PF553_14615 IPR001057 Glutamate/acetylglutamate kinase PF553_14615 IPR041739 Glutamate-5-kinase domain PF553_14620 IPR027417 P-loop containing nucleoside triphosphate hydrolase PF553_14620 IPR036726 GTP1/OBG domain superfamily PF553_14620 IPR006169 GTP1/OBG domain PF553_14620 IPR006074 GTP1/OBG, conserved site PF553_14620 IPR014100 GTP-binding protein Obg/CgtA PF553_14620 IPR035101 GTP-binding protein, Obg-type PF553_14620 IPR031167 OBG-type guanine nucleotide-binding (G) domain PF553_14620 IPR006073 GTP binding domain PF553_14635 IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family PF553_14635 IPR020829 Glyceraldehyde 3-phosphate dehydrogenase, catalytic domain PF553_14635 IPR020828 Glyceraldehyde 3-phosphate dehydrogenase, NAD(P) binding domain PF553_14635 IPR006424 Glyceraldehyde-3-phosphate dehydrogenase, type I PF553_14635 IPR036291 NAD(P)-binding domain superfamily PF553_14635 IPR020830 Glyceraldehyde 3-phosphate dehydrogenase, active site PF553_14640 IPR000620 EamA domain PF553_14640 IPR004626 RarD protein PF553_14650 IPR006935 Helicase/UvrB, N-terminal PF553_14650 IPR001650 Helicase, C-terminal PF553_14650 IPR041471 UvrB, interaction domain PF553_14650 IPR027417 P-loop containing nucleoside triphosphate hydrolase PF553_14650 IPR001943 UVR domain PF553_14650 IPR014001 Helicase superfamily 1/2, ATP-binding domain PF553_14650 IPR024759 UvrB, YAD/RRR-motif-containing domain PF553_14650 IPR004807 UvrABC system, subunit B PF553_14650 IPR036876 UVR domain superfamily PF553_14660 IPR029787 Nucleotide cyclase PF553_14660 IPR033416 Periplasmic sensor domain CHASE7 PF553_14660 IPR000160 GGDEF domain PF553_14670 IPR004839 Aminotransferase, class I/classII PF553_14670 IPR004838 Aminotransferases, class-I, pyridoxal-phosphate-binding site PF553_14670 IPR015424 Pyridoxal phosphate-dependent transferase PF553_14670 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 PF553_14670 IPR015421 Pyridoxal phosphate-dependent transferase, major domain PF553_14680 IPR018181 Heat shock protein 70, conserved site PF553_14680 IPR042030 Chaperone protein HscC, nucleotide-binding domain PF553_14680 IPR029047 Heat shock protein 70kD, peptide-binding domain superfamily PF553_14680 IPR013126 Heat shock protein 70 family PF553_14710 IPR036291 NAD(P)-binding domain superfamily PF553_14710 IPR020904 Short-chain dehydrogenase/reductase, conserved site PF553_14710 IPR002347 Short-chain dehydrogenase/reductase SDR PF553_14715 IPR012347 Ferritin-like PF553_14715 IPR009078 Ferritin-like superfamily PF553_14715 IPR010386 tRNA-hydroxylase MiaE PF553_14720 IPR013785 Aldolase-type TIM barrel PF553_14720 IPR004569 Pyridoxal phosphate (active vitamin B6) biosynthesis PdxJ PF553_14720 IPR036130 Pyridoxine 5'-phosphate synthase PF553_14725 IPR037278 ARFGAP/RecO-like zinc finger PF553_14725 IPR022572 DNA replication/recombination mediator RecO, N-terminal PF553_14725 IPR012340 Nucleic acid-binding, OB-fold PF553_14725 IPR003717 Recombination protein O, RecO PF553_14735 IPR005225 Small GTP-binding protein domain PF553_14735 IPR027417 P-loop containing nucleoside triphosphate hydrolase PF553_14735 IPR009019 K homology domain superfamily, prokaryotic type PF553_14735 IPR015946 K homology domain-like, alpha/beta PF553_14735 IPR006073 GTP binding domain PF553_14735 IPR005662 GTP-binding protein Era PF553_14735 IPR030388 Era-type guanine nucleotide-binding (G) domain PF553_14735 IPR004044 K Homology domain, type 2 PF553_14740 IPR014720 Double-stranded RNA-binding domain PF553_14740 IPR011907 Ribonuclease III PF553_14740 IPR000999 Ribonuclease III domain PF553_14740 IPR036389 Ribonuclease III, endonuclease domain superfamily PF553_14750 IPR019533 Peptidase S26 PF553_14750 IPR019756 Peptidase S26A, signal peptidase I, serine active site PF553_14750 IPR019758 Peptidase S26A, signal peptidase I, conserved site PF553_14750 IPR000223 Peptidase S26A, signal peptidase I PF553_14750 IPR036286 LexA/Signal peptidase-like superfamily PF553_14750 IPR019757 Peptidase S26A, signal peptidase I, lysine active site PF553_14755 IPR027417 P-loop containing nucleoside triphosphate hydrolase PF553_14755 IPR000795 Transcription factor, GTP-binding domain PF553_14755 IPR005225 Small GTP-binding protein domain PF553_14755 IPR035654 Elongation factor 4, domain IV PF553_14755 IPR006297 Elongation factor 4 PF553_14755 IPR038363 LepA, C-terminal domain superfamily PF553_14755 IPR031157 Tr-type G domain, conserved site PF553_14755 IPR004161 Translation elongation factor EFTu-like, domain 2 PF553_14755 IPR000640 Elongation factor EFG, domain V-like PF553_14755 IPR035647 EF-G domain III/V-like PF553_14755 IPR013842 GTP-binding protein LepA, C-terminal PF553_14765 IPR009003 Peptidase S1, PA clan PF553_14765 IPR001940 Peptidase S1C PF553_14765 IPR011782 Peptidase S1C, Do PF553_14765 IPR001478 PDZ domain PF553_14765 IPR036034 PDZ superfamily PF553_14770 IPR003953 FAD-dependent oxidoreductase 2, FAD binding domain PF553_14770 IPR036188 FAD/NAD(P)-binding domain superfamily PF553_14770 IPR037099 Fumarate reductase/succinate dehydrogenase flavoprotein-like, C-terminal domain superfamily PF553_14770 IPR015939 Fumarate reductase/succinate dehydrogenase flavoprotein-like, C-terminal PF553_14770 IPR005288 L-aspartate oxidase PF553_14770 IPR027477 Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain superfamily PF553_14780 IPR027417 P-loop containing nucleoside triphosphate hydrolase PF553_14780 IPR039430 Thymidylate kinase-like domain PF553_14780 IPR018094 Thymidylate kinase PF553_14785 IPR003770 Endolytic murein transglycosylase PF553_14790 IPR036038 Aminotransferase-like, PLP-dependent enzymes PF553_14790 IPR001544 Aminotransferase class IV PF553_14790 IPR017824 Aminodeoxychorismate lyase, class IV PF553_14790 IPR018300 Aminotransferase, class IV, conserved site PF553_14795 IPR000957 Sulphate/thiosulphate-binding, conserved site PF553_14795 IPR034408 Sulphate/thiosulphate-binding site PF553_14795 IPR005669 Thiosulphate/Sulfate-binding protein PF553_14805 IPR011865 Sulphate ABC transporter, permease protein CysT PF553_14805 IPR000515 ABC transporter type 1, transmembrane domain MetI-like PF553_14805 IPR035906 MetI-like superfamily PF553_14805 IPR005667 Sulphate ABC transporter permease protein 2 PF553_14810 IPR035906 MetI-like superfamily PF553_14810 IPR005667 Sulphate ABC transporter permease protein 2 PF553_14810 IPR011866 Sulphate ABC transporter, permease protein CysW PF553_14810 IPR000515 ABC transporter type 1, transmembrane domain MetI-like PF553_14815 IPR024765 TOBE-like domain PF553_14815 IPR005666 Sulphate transport system permease protein 1 PF553_14815 IPR027417 P-loop containing nucleoside triphosphate hydrolase PF553_14815 IPR003439 ABC transporter-like PF553_14815 IPR017871 ABC transporter, conserved site PF553_14815 IPR014769 ABC transporter, sulphate/thiosulphate import, ATP-binding protein CysA, C-terminal PF553_14815 IPR003593 AAA+ ATPase domain PF553_14815 IPR008995 Molybdate/tungstate binding, C-terminal PF553_14820 IPR036390 Winged helix DNA-binding domain superfamily PF553_14820 IPR000847 Transcription regulator HTH, LysR PF553_14820 IPR005119 LysR, substrate-binding PF553_14820 IPR036388 Winged helix-like DNA-binding domain superfamily PF553_14820 IPR037423 HTH-type transcriptional regulator CysB, PBP2 domain PF553_14830 IPR005664 Tetrahydrodipicolinate N-succinyltransferase, transferase hexapeptide repeat family PF553_14830 IPR001451 Hexapeptide repeat PF553_14830 IPR018357 Hexapeptide transferase, conserved site PF553_14830 IPR023180 Tetrahydrodipicolinate-N-succinyltransferase, chain A, domain 1 PF553_14830 IPR037133 Tetrahydrodipicolinate-N-succinyltransferase, N-terminal domain superfamily PF553_14830 IPR011004 Trimeric LpxA-like superfamily PF553_14835 IPR007197 Radical SAM PF553_14835 IPR024924 7-carboxy-7-deazaguanine synthase-like PF553_14835 IPR013785 Aldolase-type TIM barrel PF553_14840 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold PF553_14840 IPR018317 Queuosine biosynthesis protein QueC PF553_14855 IPR000866 Alkyl hydroperoxide reductase subunit C/ Thiol specific antioxidant PF553_14855 IPR036249 Thioredoxin-like superfamily PF553_14855 IPR013766 Thioredoxin domain PF553_14865 IPR000086 NUDIX hydrolase domain PF553_14865 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold PF553_14865 IPR020084 NUDIX hydrolase, conserved site PF553_14865 IPR015797 NUDIX hydrolase-like domain superfamily PF553_14865 IPR004821 Cytidyltransferase-like domain PF553_14865 IPR041750 Bifunctional NMN adenylyltransferase/Nudix hydrolase, N-terminal NMNAT domain PF553_14870 IPR029045 ClpP/crotonase-like domain superfamily PF553_14870 IPR011968 Phenylacetate degradation probable enoyl-CoA hydratase PaaB PF553_14870 IPR014748 Enoyl-CoA hydratase, C-terminal PF553_14870 IPR001753 Enoyl-CoA hydratase/isomerase PF553_14875 IPR002678 GTP cyclohydrolase 1 type 2/Nif3 PF553_14875 IPR036069 GTP cyclohydrolase 1 type 2/Nif3 superfamily PF553_14875 IPR017221 GTP cyclohydrolase 1 type 2//Nif3, bacteria PF553_14875 IPR015867 Nitrogen regulatory protein PII/ATP phosphoribosyltransferase, C-terminal PF553_14885 IPR004812 Drug resistance transporter Bcr/CmlA subfamily PF553_14885 IPR011701 Major facilitator superfamily PF553_14885 IPR020846 Major facilitator superfamily domain PF553_14885 IPR036259 MFS transporter superfamily PF553_14890 IPR036604 Phosphoribosylformylglycinamidine synthase subunit PurS-like superfamily PF553_14890 IPR036921 PurM-like, N-terminal domain superfamily PF553_14890 IPR036676 PurM-like, C-terminal domain superfamily PF553_14890 IPR029062 Class I glutamine amidotransferase-like PF553_14890 IPR041609 Phosphoribosylformylglycinamidine synthase, linker domain PF553_14890 IPR010073 Phosphoribosylformylglycinamidine synthase PurL PF553_14890 IPR017926 Glutamine amidotransferase PF553_14890 IPR040707 Phosphoribosylformylglycinamidine synthase, N-terminal PF553_14890 IPR010918 PurM-like, C-terminal domain PF553_14895 IPR006674 HD domain PF553_14895 IPR003607 HD/PDEase domain PF553_14895 IPR027432 Deoxyguanosinetriphosphate triphosphohydrolase, C-terminal PF553_14895 IPR006261 dNTP triphosphohydrolase PF553_14895 IPR023024 dNTP triphosphohydrolase, type 3 PF553_14895 IPR023293 Deoxyguanosinetriphosphate triphosphohydrolase, central domain superfamily PF553_14900 IPR013849 DNA helicase, Holliday junction RuvA type, domain I, bacterial PF553_14900 IPR003583 Helix-hairpin-helix DNA-binding motif, class 1 PF553_14900 IPR012340 Nucleic acid-binding, OB-fold PF553_14900 IPR000085 Bacterial DNA recombination protein RuvA PF553_14900 IPR010994 RuvA domain 2-like PF553_14900 IPR011114 Holliday junction DNA helicase RuvA, C-terminal PF553_14900 IPR036267 RuvA, C-terminal domain superfamily PF553_14905 IPR036390 Winged helix DNA-binding domain superfamily PF553_14905 IPR036388 Winged helix-like DNA-binding domain superfamily PF553_14905 IPR008823 RuvB C-terminal winged helix domain PF553_14905 IPR003593 AAA+ ATPase domain PF553_14905 IPR004605 DNA helicase, Holliday junction RuvB-type PF553_14905 IPR041445 RuvB, AAA lid domain PF553_14905 IPR008824 RuvB-like P-loop domain PF553_14905 IPR027417 P-loop containing nucleoside triphosphate hydrolase PF553_14910 IPR002933 Peptidase M20 PF553_14910 IPR011650 Peptidase M20, dimerisation domain PF553_14910 IPR036264 Bacterial exopeptidase dimerisation domain PF553_14910 IPR017439 Amidohydrolase PF553_14915 IPR006683 Thioesterase domain PF553_14915 IPR014166 Tol-Pal system-associated acyl-CoA thioesterase PF553_14915 IPR029069 HotDog domain superfamily PF553_14915 IPR008272 4-hydroxybenzoyl-CoA thioesterase, active site PF553_14915 IPR006684 Acyl-CoA thioester hydrolase YbgC/YbaW family PF553_14920 IPR002898 MotA/TolQ/ExbB proton channel PF553_14920 IPR014163 Tol-Pal system, TolQ PF553_14925 IPR003400 Biopolymer transport protein ExbD/TolR PF553_14925 IPR014168 Tol-Pal system protein TolR PF553_14935 IPR007195 TolB, N-terminal PF553_14935 IPR036752 TolB, N-terminal domain superfamily PF553_14935 IPR011659 WD40-like Beta Propeller PF553_14935 IPR011042 Six-bladed beta-propeller, TolB-like PF553_14935 IPR014167 Tol-Pal system protein TolB PF553_14940 IPR006664 Outer membrane protein, bacterial PF553_14940 IPR006665 OmpA-like domain PF553_14940 IPR036737 OmpA-like domain superfamily PF553_14940 IPR039001 Peptidoglycan-associated lipoprotein PF553_14940 IPR014169 Peptidoglycan-associated lipoprotein, C-terminal PF553_14940 IPR006690 Outer membrane protein, OmpA-like, conserved site PF553_14950 IPR000146 Fructose-1,6-bisphosphatase class 1 PF553_14950 IPR033391 Fructose-1-6-bisphosphatase class I, N-terminal PF553_14950 IPR028343 Fructose-1,6-bisphosphatase PF553_14955 IPR029028 Alpha/beta knot methyltransferases PF553_14955 IPR001537 tRNA/rRNA methyltransferase, SpoU type PF553_14955 IPR013123 RNA 2-O ribose methyltransferase, substrate binding PF553_14955 IPR029026 tRNA (guanine-N1-)-methyltransferase, N-terminal PF553_14955 IPR029064 50S ribosomal protein L30e-like PF553_14975 IPR009057 Homeobox-like domain superfamily PF553_14985 IPR024463 Transposase TnpC, homeodomain PF553_14985 IPR004291 Transposase, IS66 PF553_14985 IPR039552 Transposase IS66, C-terminal PF553_14985 IPR024474 Zinc-finger binding domain of transposase IS66 PF553_15000 IPR003593 AAA+ ATPase domain PF553_15000 IPR010921 Trp repressor/replication initiator PF553_15000 IPR001957 Chromosomal replication control, initiator DnaA PF553_15000 IPR038454 DnaA, N-terminal domain superfamily PF553_15000 IPR013159 Chromosomal replication initiator, DnaA C-terminal PF553_15000 IPR013317 Chromosomal replication initiator protein DnaA PF553_15000 IPR018312 Chromosomal replication control, initiator DnaA, conserved site PF553_15000 IPR020591 Chromosomal replication control, initiator DnaA-like PF553_15000 IPR027417 P-loop containing nucleoside triphosphate hydrolase PF553_15000 IPR024633 DnaA N-terminal domain PF553_15005 IPR002549 Transmembrane protein TqsA-like PF553_15010 IPR036921 PurM-like, N-terminal domain superfamily PF553_15010 IPR016188 PurM-like, N-terminal domain PF553_15010 IPR036676 PurM-like, C-terminal domain superfamily PF553_15010 IPR010918 PurM-like, C-terminal domain PF553_15010 IPR004733 Phosphoribosylformylglycinamidine cyclo-ligase PF553_15015 IPR002376 Formyl transferase, N-terminal PF553_15015 IPR036477 Formyl transferase, N-terminal domain superfamily PF553_15015 IPR004607 Phosphoribosylglycinamide formyltransferase PF553_15015 IPR001555 Phosphoribosylglycinamide formyltransferase, active site PF553_15020 IPR000073 Alpha/beta hydrolase fold-1 PF553_15020 IPR029058 Alpha/Beta hydrolase fold PF553_15025 IPR029045 ClpP/crotonase-like domain superfamily PF553_15025 IPR023171 Na/H antiporter domain superfamily PF553_15025 IPR004670 Na+/H+ antiporter NhaA PF553_15025 IPR002142 Peptidase S49 PF553_15035 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like PF553_15035 IPR035681 ComA-like, MBL domain PF553_15035 IPR001279 Metallo-beta-lactamase PF553_15035 IPR004477 ComEC/Rec2-related protein PF553_15035 IPR004797 Competence protein ComEC/Rec2 PF553_15035 IPR025405 Domain of unknown function DUF4131 PF553_15040 IPR003439 ABC transporter-like PF553_15040 IPR003593 AAA+ ATPase domain PF553_15040 IPR015854 ABC transporter, lipoprotein release, LolD PF553_15040 IPR017871 ABC transporter, conserved site PF553_15040 IPR027417 P-loop containing nucleoside triphosphate hydrolase PF553_15045 IPR025857 MacB-like periplasmic core domain PF553_15045 IPR003838 ABC transporter permease protein domain PF553_15045 IPR011925 Lipoprotein-releasing system transmembrane protein LolC/E PF553_15055 IPR003791 Protein of unknown function UPF0178 PF553_15070 IPR000192 Aminotransferase class V domain PF553_15070 IPR020578 Aminotransferase class-V, pyridoxal-phosphate binding site PF553_15070 IPR022278 Phosphoserine aminotransferase PF553_15070 IPR015424 Pyridoxal phosphate-dependent transferase PF553_15070 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 PF553_15070 IPR015421 Pyridoxal phosphate-dependent transferase, major domain PF553_15080 IPR039562 Membrane fusion protein, biotin-lipoyl like domain PF553_15100 IPR029044 Nucleotide-diphospho-sugar transferases PF553_15100 IPR001173 Glycosyltransferase 2-like PF553_15115 IPR002205 DNA topoisomerase, type IIA, subunit A/C-terminal PF553_15115 IPR013758 DNA topoisomerase, type IIA, subunit A/ C-terminal, alpha-beta PF553_15115 IPR035516 DNA gyrase/topoisomerase IV, subunit A, C-terminal PF553_15115 IPR005743 DNA gyrase, subunit A PF553_15115 IPR013760 DNA topoisomerase, type IIA-like domain superfamily PF553_15115 IPR006691 DNA gyrase/topoisomerase IV, subunit A, C-terminal repeat PF553_15115 IPR013757 Type IIA DNA topoisomerase subunit A, alpha-helical domain superfamily PF553_15120 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold PF553_15120 IPR029035 DHS-like NAD/FAD-binding domain superfamily PF553_15120 IPR018206 Electron transfer flavoprotein subunit alpha, conserved site PF553_15120 IPR014731 Electron transfer flavoprotein, alpha subunit, C-terminal PF553_15120 IPR033947 Electron transfer flavoprotein, alpha subunit, N-terminal PF553_15120 IPR014730 Electron transfer flavoprotein, alpha/beta-subunit, N-terminal PF553_15120 IPR001308 Electron transfer flavoprotein alpha subunit/FixB PF553_15125 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold PF553_15125 IPR033948 Electron transfer flavoprotein, beta subunit, N-terminal PF553_15125 IPR012255 Electron transfer flavoprotein, beta subunit PF553_15125 IPR014730 Electron transfer flavoprotein, alpha/beta-subunit, N-terminal PF553_15125 IPR000049 Electron transfer flavoprotein, beta-subunit, conserved site PF553_15130 IPR002104 Integrase, catalytic domain PF553_15130 IPR013762 Integrase-like, catalytic domain superfamily PF553_15130 IPR011931 Tyrosine recombinase XerC PF553_15130 IPR004107 Integrase, SAM-like, N-terminal PF553_15130 IPR011010 DNA breaking-rejoining enzyme, catalytic core PF553_15130 IPR010998 Integrase/recombinase, N-terminal PF553_15130 IPR023009 Tyrosine recombinase XerC/XerD PF553_15135 IPR004778 Homoserine/Threonine efflux protein PF553_15135 IPR001123 Amino acid exporter protein, LeuE-type PF553_15140 IPR018510 Diaminopimelate epimerase, active site PF553_15140 IPR001653 Diaminopimelate epimerase, DapF PF553_15145 IPR029066 PLP-binding barrel PF553_15145 IPR000183 Ornithine/DAP/Arg decarboxylase PF553_15145 IPR022653 Orn/DAP/Arg decarboxylase 2, pyridoxal-phosphate binding site PF553_15145 IPR022644 Orn/DAP/Arg decarboxylase 2, N-terminal PF553_15145 IPR022643 Orn/DAP/Arg decarboxylase 2, C-terminal PF553_15145 IPR002986 Diaminopimelate decarboxylase, LysA PF553_15145 IPR009006 Alanine racemase/group IV decarboxylase, C-terminal PF553_15145 IPR022657 Orn/DAP/Arg decarboxylase 2, conserved site PF553_15155 IPR004841 Amino acid permease/ SLC12A domain PF553_15155 IPR004840 Amino acid permease, conserved site PF553_15160 IPR003593 AAA+ ATPase domain PF553_15160 IPR004504 DNA repair protein RadA PF553_15160 IPR027417 P-loop containing nucleoside triphosphate hydrolase PF553_15160 IPR020588 DNA recombination and repair protein RecA-like, ATP-binding domain PF553_15160 IPR020568 Ribosomal protein S5 domain 2-type fold PF553_15160 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup PF553_15160 IPR041166 LapB, rubredoxin metal binding domain PF553_15170 IPR018149 Lysyl-tRNA synthetase, class II, C-terminal PF553_15170 IPR004364 Aminoacyl-tRNA synthetase, class II (D/K/N) PF553_15170 IPR004525 Elongation factor P--(R)-beta-lysine ligase PF553_15170 IPR006195 Aminoacyl-tRNA synthetase, class II PF553_15175 IPR006139 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain PF553_15175 IPR038251 PdxB, dimerisation domain superfamily PF553_15175 IPR036291 NAD(P)-binding domain superfamily PF553_15175 IPR020921 Erythronate-4-phosphate dehydrogenase PF553_15175 IPR006140 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain PF553_15175 IPR024531 Erythronate-4-phosphate dehydrogenase, dimerisation domain PF553_15175 IPR029752 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain conserved site 1 PF553_15180 IPR010652 Domain of unknown function DUF1232 PF553_15185 IPR016193 Cytidine deaminase-like PF553_15185 IPR003786 Sulfur carrier protein FdhD PF553_15190 IPR009010 Aspartate decarboxylase-like domain superfamily PF553_15190 IPR037951 YdeP-like, MopB domain PF553_15190 IPR006656 Molybdopterin oxidoreductase PF553_15190 IPR010046 Oxidoreductase alpha (molybdopterin) subunit PF553_15190 IPR041953 YdeP, molybdopterin-binding oxidoreductase-like domain PF553_15195 IPR036129 Glycerate kinase superfamily PF553_15195 IPR018197 Glycerate kinase, restriction-enzyme-like fold PF553_15195 IPR018193 Glycerate kinase, flavodoxin-like fold PF553_15195 IPR004381 Glycerate kinase PF553_15205 IPR011284 3-oxoacyl-(acyl-carrier-protein) reductase PF553_15205 IPR020904 Short-chain dehydrogenase/reductase, conserved site PF553_15205 IPR002347 Short-chain dehydrogenase/reductase SDR PF553_15205 IPR036291 NAD(P)-binding domain superfamily PF553_15210 IPR029479 Nitroreductase PF553_15210 IPR000415 Nitroreductase-like PF553_15230 IPR018654 Putative toxin of bacterial toxin-antitoxin pair PF553_15255 IPR036953 Transcription elongation factor GreA/GreB, C-terminal domain superfamily PF553_15255 IPR018151 Transcription elongation factor, GreA/GreB, conserved site PF553_15255 IPR028624 Transcription elongation factor GreA/GreB PF553_15255 IPR001437 Transcription elongation factor, GreA/GreB, C-terminal PF553_15255 IPR023459 Transcription elongation factor GreA/GreB family PF553_15255 IPR022691 Transcription elongation factor, GreA/GreB, N-terminal PF553_15255 IPR036805 Transcription elongation factor, GreA/GreB, N-terminal domain superfamily PF553_15255 IPR006358 Transcription elongation factor GreB PF553_15260 IPR023703 Membrane-bound lytic murein transglycosylase F PF553_15260 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF PF553_15260 IPR023346 Lysozyme-like domain superfamily PF553_15260 IPR000189 Prokaryotic transglycosylase, active site PF553_15260 IPR008258 Transglycosylase SLT domain 1 PF553_15270 IPR035107 tRNA thiolation protein, TtcA/Ctu1 type PF553_15270 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold PF553_15270 IPR011063 tRNA(Ile)-lysidine/2-thiocytidine synthase, N-terminal PF553_15270 IPR012089 tRNA-cytidine(32) 2-sulfurtransferase PF553_15275 IPR023346 Lysozyme-like domain superfamily PF553_15275 IPR000189 Prokaryotic transglycosylase, active site PF553_15275 IPR008258 Transglycosylase SLT domain 1 PF553_15280 IPR001915 Peptidase M48 PF553_15280 IPR022919 Peptidase M48, protease HtpX, putative PF553_15290 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains PF553_15290 IPR001036 Acriflavin resistance protein PF553_15290 IPR004764 Hydrophobe/amphiphile efflux-1 HAE1 PF553_15295 IPR030395 Glycerophosphodiester phosphodiesterase domain PF553_15295 IPR017946 PLC-like phosphodiesterase, TIM beta/alpha-barrel domain superfamily PF553_15300 IPR001279 Metallo-beta-lactamase PF553_15300 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like PF553_15305 IPR000829 DAGK family PF553_15305 IPR033718 Diacylglycerol kinase, prokaryotic PF553_15305 IPR036945 Diacylglycerol kinase (DAGK) superfamily PF553_15310 IPR027413 GroEL-like equatorial domain superfamily PF553_15310 IPR027409 GroEL-like apical domain superfamily PF553_15310 IPR002423 Chaperonin Cpn60/TCP-1 family PF553_15310 IPR027410 TCP-1-like chaperonin intermediate domain superfamily PF553_15310 IPR018370 Chaperonin Cpn60, conserved site PF553_15310 IPR001844 Chaperonin Cpn60 PF553_15315 IPR020818 GroES chaperonin family PF553_15315 IPR037124 GroES chaperonin superfamily PF553_15315 IPR018369 Chaperonin GroES, conserved site PF553_15315 IPR011032 GroES-like superfamily PF553_15325 IPR004843 Calcineurin-like phosphoesterase domain, ApaH type PF553_15325 IPR026575 3,5-cyclic adenosine monophosphate phosphodiesterase CpdA PF553_15325 IPR042281 GpdQ, beta-strand dimerisation domain PF553_15325 IPR042283 GpdQ, catalytic alpha/beta sandwich domain PF553_15330 IPR017438 Inorganic polyphosphate/ATP-NAD kinase, N-terminal PF553_15330 IPR001206 Diacylglycerol kinase, catalytic domain PF553_15330 IPR016064 NAD kinase/diacylglycerol kinase-like domain superfamily PF553_15335 IPR035078 Phosphoenolpyruvate carboxykinase, GTP-utilising, N-terminal PF553_15335 IPR008210 Phosphoenolpyruvate carboxykinase, N-terminal PF553_15335 IPR035077 Phosphoenolpyruvate carboxykinase, C-terminal P-loop domain PF553_15335 IPR008209 Phosphoenolpyruvate carboxykinase, GTP-utilising PF553_15335 IPR013035 Phosphoenolpyruvate carboxykinase, C-terminal PF553_15335 IPR018091 Phosphoenolpyruvate carboxykinase, GTP-utilising, conserved site PF553_15340 IPR031656 Alpha-glycerophosphate oxidase, C-terminal PF553_15340 IPR038299 Alpha-glycerophosphate oxidase, C-terminal domain superfamily PF553_15340 IPR006076 FAD dependent oxidoreductase PF553_15340 IPR036188 FAD/NAD(P)-binding domain superfamily PF553_15340 IPR000447 FAD-dependent glycerol-3-phosphate dehydrogenase PF553_15345 IPR005999 Glycerol kinase PF553_15345 IPR018484 Carbohydrate kinase, FGGY, N-terminal PF553_15345 IPR018483 Carbohydrate kinase, FGGY, conserved site PF553_15345 IPR000577 Carbohydrate kinase, FGGY PF553_15345 IPR018485 Carbohydrate kinase, FGGY, C-terminal PF553_15350 IPR020846 Major facilitator superfamily domain PF553_15350 IPR004736 MFS transporter, metabolite:H symporter PF553_15350 IPR005828 Major facilitator, sugar transporter-like PF553_15350 IPR036259 MFS transporter superfamily PF553_15350 IPR005829 Sugar transporter, conserved site PF553_15360 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase PF553_15360 IPR004498 Ribosomal protein L11 methyltransferase PF553_15365 IPR020631 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain PF553_15365 IPR000672 Tetrahydrofolate dehydrogenase/cyclohydrolase PF553_15365 IPR020630 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain PF553_15365 IPR020867 Tetrahydrofolate dehydrogenase/cyclohydrolase, conserved site PF553_15365 IPR036291 NAD(P)-binding domain superfamily PF553_15380 IPR018946 Alkaline phosphatase D-related PF553_15380 IPR006311 Twin-arginine translocation pathway, signal sequence PF553_15380 IPR008963 Purple acid phosphatase-like, N-terminal PF553_15380 IPR032093 Phospholipase D, N-terminal PF553_15380 IPR038607 PhoD-like superfamily PF553_15400 IPR006390 Dihydropteroate synthase PF553_15400 IPR011005 Dihydropteroate synthase-like PF553_15400 IPR000489 Pterin-binding domain PF553_15405 IPR003593 AAA+ ATPase domain PF553_15405 IPR003959 ATPase, AAA-type, core PF553_15405 IPR003960 ATPase, AAA-type, conserved site PF553_15405 IPR005936 Peptidase, FtsH PF553_15405 IPR027417 P-loop containing nucleoside triphosphate hydrolase PF553_15405 IPR011546 Peptidase M41, FtsH extracellular PF553_15405 IPR000642 Peptidase M41 PF553_15405 IPR037219 Peptidase M41-like PF553_15405 IPR041569 AAA ATPase, AAA+ lid domain PF553_15410 IPR002877 Ribosomal RNA methyltransferase FtsJ domain PF553_15410 IPR015507 Ribosomal RNA large subunit methyltransferase E PF553_15410 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase PF553_15415 IPR035920 YhbY-like superfamily PF553_15415 IPR017924 RNA-binding protein YhbY PF553_15415 IPR001890 RNA-binding, CRM domain PF553_15430 IPR002474 Carbamoyl-phosphate synthase small subunit, N-terminal domain PF553_15430 IPR036480 Carbamoyl-phosphate synthase small subunit, N-terminal domain superfamily PF553_15430 IPR029062 Class I glutamine amidotransferase-like PF553_15430 IPR035686 Carbamoyl-phosphate synthase small subunit, GATase1 domain PF553_15430 IPR017926 Glutamine amidotransferase PF553_15430 IPR006274 Carbamoyl-phosphate synthase, small subunit PF553_15435 IPR016185 Pre-ATP-grasp domain superfamily PF553_15435 IPR033937 Carbamoyl-phosphate synthase large chain, methylglyoxal synthase-like domain PF553_15435 IPR036914 Methylglyoxal synthase-like domain superfamily PF553_15435 IPR011607 Methylglyoxal synthase-like domain PF553_15435 IPR005483 Carbamoyl-phosphate synthase large subunit, CPSase domain PF553_15435 IPR036897 Carbamoyl-phosphate synthetase, large subunit oligomerisation domain superfamily PF553_15435 IPR005480 Carbamoyl-phosphate synthetase, large subunit oligomerisation domain PF553_15435 IPR006275 Carbamoyl-phosphate synthase, large subunit PF553_15435 IPR011761 ATP-grasp fold PF553_15435 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain PF553_15440 IPR001437 Transcription elongation factor, GreA/GreB, C-terminal PF553_15440 IPR022691 Transcription elongation factor, GreA/GreB, N-terminal PF553_15440 IPR023459 Transcription elongation factor GreA/GreB family PF553_15440 IPR036805 Transcription elongation factor, GreA/GreB, N-terminal domain superfamily PF553_15440 IPR028624 Transcription elongation factor GreA/GreB PF553_15440 IPR018151 Transcription elongation factor, GreA/GreB, conserved site PF553_15440 IPR036953 Transcription elongation factor GreA/GreB, C-terminal domain superfamily PF553_15440 IPR006359 Transcription elongation factor GreA PF553_15445 IPR001451 Hexapeptide repeat PF553_15445 IPR011004 Trimeric LpxA-like superfamily PF553_15445 IPR018357 Hexapeptide transferase, conserved site PF553_15450 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold PF553_15450 IPR006015 Universal stress protein A family PF553_15450 IPR006016 UspA PF553_15455 IPR014048 Methylated-DNA-[protein]-cysteine S-methyltransferase, DNA binding PF553_15455 IPR036217 Methylated DNA-protein cysteine methyltransferase, DNA binding domain PF553_15455 IPR036388 Winged helix-like DNA-binding domain superfamily PF553_15465 IPR019079 Capsule synthesis protein, CapA PF553_15465 IPR029052 Metallo-dependent phosphatase-like PF553_15480 IPR038770 Sodium/solute symporter superfamily PF553_15480 IPR006153 Cation/H+ exchanger PF553_15480 IPR018422 Cation/H+ exchanger, CPA1 family PF553_15485 IPR007343 Uncharacterised protein family, zinc metallopeptidase putative PF553_15490 IPR008526 Inner membrane protein YedI PF553_15495 IPR024109 Tryptophan-tRNA ligase, bacterial-type PF553_15495 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold PF553_15495 IPR002306 Tryptophan-tRNA ligase PF553_15495 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site PF553_15495 IPR002305 Aminoacyl-tRNA synthetase, class Ic PF553_15500 IPR016102 Succinyl-CoA synthetase-like PF553_15500 IPR036291 NAD(P)-binding domain superfamily PF553_15500 IPR017440 ATP-citrate lyase/succinyl-CoA ligase, active site PF553_15500 IPR005810 Succinyl-CoA ligase, alpha subunit PF553_15500 IPR003781 CoA-binding PF553_15500 IPR033847 ATP-citrate lyase/succinyl-CoA ligase, conserved site PF553_15500 IPR005811 ATP-citrate lyase/succinyl-CoA ligase PF553_15505 IPR011761 ATP-grasp fold PF553_15505 IPR013650 ATP-grasp fold, succinyl-CoA synthetase-type PF553_15505 IPR005811 ATP-citrate lyase/succinyl-CoA ligase PF553_15505 IPR017866 Succinyl-CoA synthetase, beta subunit, conserved site PF553_15505 IPR005809 Succinate--CoA synthetase, beta subunit PF553_15505 IPR016102 Succinyl-CoA synthetase-like PF553_15505 IPR013815 ATP-grasp fold, subdomain 1 PF553_15510 IPR001100 Pyridine nucleotide-disulphide oxidoreductase, class I PF553_15510 IPR012999 Pyridine nucleotide-disulphide oxidoreductase, class I, active site PF553_15510 IPR004099 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain PF553_15510 IPR016156 FAD/NAD-linked reductase, dimerisation domain superfamily PF553_15510 IPR023753 FAD/NAD(P)-binding domain PF553_15510 IPR036188 FAD/NAD(P)-binding domain superfamily PF553_15510 IPR006258 Dihydrolipoamide dehydrogenase PF553_15515 IPR006255 Dihydrolipoamide succinyltransferase PF553_15515 IPR004167 Peripheral subunit-binding domain PF553_15515 IPR036625 E3-binding domain superfamily PF553_15515 IPR011053 Single hybrid motif PF553_15515 IPR000089 Biotin/lipoyl attachment PF553_15515 IPR001078 2-oxoacid dehydrogenase acyltransferase, catalytic domain PF553_15515 IPR003016 2-oxo acid dehydrogenase, lipoyl-binding site PF553_15515 IPR023213 Chloramphenicol acetyltransferase-like domain superfamily PF553_15520 IPR005475 Transketolase-like, pyrimidine-binding domain PF553_15520 IPR032106 2-oxoglutarate dehydrogenase E1 component, N-terminal domain PF553_15520 IPR011603 2-oxoglutarate dehydrogenase E1 component PF553_15520 IPR001017 Dehydrogenase, E1 component PF553_15520 IPR031717 Multifunctional 2-oxoglutarate metabolism enzyme, C-terminal PF553_15520 IPR042179 Multifunctional 2-oxoglutarate metabolism enzyme, C-terminal domain superfamily PF553_15520 IPR029061 Thiamin diphosphate-binding fold PF553_15535 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain PF553_15535 IPR036010 2Fe-2S ferredoxin-like superfamily PF553_15535 IPR004489 Succinate dehydrogenase/fumarate reductase iron-sulphur protein PF553_15535 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain PF553_15535 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site PF553_15535 IPR012675 Beta-grasp domain superfamily PF553_15535 IPR009051 Alpha-helical ferredoxin PF553_15535 IPR025192 Succinate dehydogenase/fumarate reductase N-terminal PF553_15540 IPR003952 Fumarate reductase/succinate dehydrogenase, FAD-binding site PF553_15540 IPR037099 Fumarate reductase/succinate dehydrogenase flavoprotein-like, C-terminal domain superfamily PF553_15540 IPR015939 Fumarate reductase/succinate dehydrogenase flavoprotein-like, C-terminal PF553_15540 IPR027477 Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain superfamily PF553_15540 IPR011281 Succinate dehydrogenase, flavoprotein subunit PF553_15540 IPR014006 Succinate dehydrogenase/fumarate reductase, flavoprotein subunit PF553_15540 IPR036188 FAD/NAD(P)-binding domain superfamily PF553_15540 IPR003953 FAD-dependent oxidoreductase 2, FAD binding domain PF553_15545 IPR034804 Fumarate reductase/succinate dehydrogenase, transmembrane subunit PF553_15545 IPR014312 Succinate dehydrogenase, hydrophobic membrane anchor PF553_15545 IPR000701 Succinate dehydrogenase/fumarate reductase type B, transmembrane subunit PF553_15550 IPR034804 Fumarate reductase/succinate dehydrogenase, transmembrane subunit PF553_15550 IPR018495 Succinate dehydrogenase, cytochrome b subunit, conserved site PF553_15550 IPR014314 Succinate dehydrogenase, cytochrome b556 subunit PF553_15550 IPR000701 Succinate dehydrogenase/fumarate reductase type B, transmembrane subunit PF553_15555 IPR010953 Citrate synthase, type I PF553_15555 IPR016143 Citrate synthase-like, small alpha subdomain PF553_15555 IPR002020 Citrate synthase PF553_15555 IPR024176 Citrate synthase, bacterial-type PF553_15555 IPR036969 Citrate synthase superfamily PF553_15555 IPR016142 Citrate synthase-like, large alpha subdomain PF553_15555 IPR019810 Citrate synthase active site PF553_15565 IPR001763 Rhodanese-like domain PF553_15565 IPR036873 Rhodanese-like domain superfamily PF553_15565 IPR020936 Uncharacterised protein family UPF0176 PF553_15565 IPR040503 UPF0176, acylphosphatase-like domain PF553_15585 IPR013324 RNA polymerase sigma factor, region 3/4-like PF553_15585 IPR012760 RNA polymerase sigma factor RpoD, C-terminal PF553_15585 IPR028630 RNA polymerase sigma factor RpoD PF553_15585 IPR036388 Winged helix-like DNA-binding domain superfamily PF553_15585 IPR042189 Sigma-70 factor, region 1.1 superfamily PF553_15585 IPR007127 RNA polymerase sigma factor 70, region 1.1 PF553_15585 IPR014284 RNA polymerase sigma-70 like domain PF553_15585 IPR013325 RNA polymerase sigma factor, region 2 PF553_15585 IPR007631 RNA polymerase sigma factor 70, non-essential domain PF553_15585 IPR007624 RNA polymerase sigma-70 region 3 PF553_15585 IPR007627 RNA polymerase sigma-70 region 2 PF553_15585 IPR007630 RNA polymerase sigma-70 region 4 PF553_15585 IPR000943 RNA polymerase sigma-70 PF553_15585 IPR009042 RNA polymerase sigma-70 region 1.2 PF553_15590 IPR007454 Uncharacterised protein family UPF0250 PF553_15590 IPR027471 YbeD-like domain superfamily PF553_15595 IPR020605 Octanoyltransferase, conserved site PF553_15595 IPR004143 Biotinyl protein ligase (BPL) and lipoyl protein ligase (LPL), catalytic domain PF553_15595 IPR000544 Octanoyltransferase PF553_15605 IPR018211 Alcohol dehydrogenase, iron-type, conserved site PF553_15605 IPR039697 Iron-type alcohol dehydrogenase-like PF553_15605 IPR001670 Alcohol dehydrogenase, iron-type/glycerol dehydrogenase GldA PF553_15610 IPR002293 Amino acid/polyamine transporter I PF553_15615 IPR005025 NADPH-dependent FMN reductase-like PF553_15615 IPR008254 Flavodoxin/nitric oxide synthase PF553_15615 IPR029039 Flavoprotein-like superfamily PF553_15620 IPR036388 Winged helix-like DNA-binding domain superfamily PF553_15620 IPR002577 Helix-turn-helix, HxlR type PF553_15620 IPR036390 Winged helix DNA-binding domain superfamily PF553_15625 IPR001537 tRNA/rRNA methyltransferase, SpoU type PF553_15625 IPR016914 tRNA (cytidine/uridine-2'-O-)-methyltransferase PF553_15625 IPR029028 Alpha/beta knot methyltransferases PF553_15625 IPR029026 tRNA (guanine-N1-)-methyltransferase, N-terminal PF553_15630 IPR000878 Tetrapyrrole methylase PF553_15630 IPR003043 Uroporphiryn-III C-methyltransferase, conserved site PF553_15630 IPR006367 Sirohaem synthase, N-terminal PF553_15630 IPR019478 Sirohaem synthase, dimerisation domain PF553_15630 IPR028281 Siroheme synthase, central domain PF553_15630 IPR012409 Sirohaem synthase PF553_15630 IPR037115 Sirohaem synthase, dimerisation domain superfamily PF553_15630 IPR036291 NAD(P)-binding domain superfamily PF553_15630 IPR006366 Uroporphyrin-III C-methyltransferase PF553_15630 IPR014776 Tetrapyrrole methylase, subdomain 2 PF553_15630 IPR014777 Tetrapyrrole methylase, subdomain 1 PF553_15630 IPR035996 Tetrapyrrole methylase superfamily PF553_15635 IPR002314 Aminoacyl-tRNA synthetase, class II (G/ P/ S/T) PF553_15635 IPR006195 Aminoacyl-tRNA synthetase, class II PF553_15635 IPR002317 Serine-tRNA ligase, type1 PF553_15635 IPR015866 Serine-tRNA synthetase, type1, N-terminal PF553_15635 IPR033729 Serine-tRNA ligase catalytic core domain PF553_15635 IPR042103 Serine-tRNA synthetase, type1, N-terminal domain superfamily PF553_15635 IPR010978 Class I and II aminoacyl-tRNA synthetase, tRNA-binding arm PF553_15645 IPR029046 Lipoprotein localisation LolA/LolB/LppX PF553_15645 IPR004564 Outer membrane lipoprotein carrier protein LolA-like PF553_15645 IPR018323 Outer membrane lipoprotein carrier protein LolA, Proteobacteria PF553_15650 IPR001684 Ribosomal protein L27 PF553_15650 IPR018261 Ribosomal protein L27, conserved site PF553_15655 IPR001787 Ribosomal protein L21 PF553_15655 IPR018258 Ribosomal protein L21, conserved site PF553_15655 IPR036164 L21-like superfamily PF553_15655 IPR028909 Ribosomal protein L21-like PF553_15665 IPR033749 Polyprenyl synthetase, conserved site PF553_15665 IPR000092 Polyprenyl synthetase PF553_15665 IPR008949 Isoprenoid synthase domain superfamily PF553_15675 IPR000326 Phosphatidic acid phosphatase type 2/haloperoxidase PF553_15675 IPR036938 Phosphatidic acid phosphatase type 2/haloperoxidase superfamily PF553_15680 IPR006143 RND efflux pump, membrane fusion protein PF553_15680 IPR032317 RND efflux pump, membrane fusion protein, barrel-sandwich domain PF553_15685 IPR001036 Acriflavin resistance protein PF553_15685 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains PF553_15685 IPR004764 Hydrophobe/amphiphile efflux-1 HAE1 PF553_15690 IPR010131 RND efflux system, outer membrane lipoprotein, NodT PF553_15690 IPR003423 Outer membrane efflux protein PF553_15695 IPR035439 UPF0145 domain superfamily PF553_15695 IPR002765 Uncharacterised protein family UPF0145 PF553_15700 IPR035439 UPF0145 domain superfamily PF553_15700 IPR002765 Uncharacterised protein family UPF0145 PF553_15710 IPR002347 Short-chain dehydrogenase/reductase SDR PF553_15710 IPR020904 Short-chain dehydrogenase/reductase, conserved site PF553_15710 IPR011284 3-oxoacyl-(acyl-carrier-protein) reductase PF553_15710 IPR036291 NAD(P)-binding domain superfamily PF553_15720 IPR037118 Valyl-tRNA synthetase, tRNA-binding arm superfamily PF553_15720 IPR002303 Valine-tRNA ligase PF553_15720 IPR009008 Valyl/Leucyl/Isoleucyl-tRNA synthetase, editing domain PF553_15720 IPR019499 Valyl-tRNA synthetase, tRNA-binding arm PF553_15720 IPR009080 Aminoacyl-tRNA synthetase, class Ia, anticodon-binding PF553_15720 IPR010978 Class I and II aminoacyl-tRNA synthetase, tRNA-binding arm PF553_15720 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold PF553_15720 IPR013155 Methionyl/Valyl/Leucyl/Isoleucyl-tRNA synthetase, anticodon-binding PF553_15720 IPR033705 Valyl tRNA synthetase, anticodon-binding domain PF553_15720 IPR002300 Aminoacyl-tRNA synthetase, class Ia PF553_15720 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site PF553_15725 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase PF553_15725 IPR005271 Carboxy-S-adenosyl-L-methionine synthase PF553_15725 IPR041698 Methyltransferase domain 25 PF553_15740 IPR005119 LysR, substrate-binding PF553_15740 IPR000847 Transcription regulator HTH, LysR PF553_15740 IPR036388 Winged helix-like DNA-binding domain superfamily PF553_15740 IPR036390 Winged helix DNA-binding domain superfamily PF553_15745 IPR029020 Ammonium/urea transporter PF553_15745 IPR024041 Ammonium transporter AmtB-like domain PF553_15745 IPR018047 Ammonium transporter, conserved site PF553_15745 IPR001905 Ammonium transporter PF553_15755 IPR005467 Histidine kinase domain PF553_15755 IPR036890 Histidine kinase/HSP90-like ATPase superfamily PF553_15755 IPR003594 Histidine kinase/HSP90-like ATPase PF553_15755 IPR003660 HAMP domain PF553_15755 IPR013727 Two-component sensor kinase, N-terminal PF553_15755 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily PF553_15755 IPR004358 Signal transduction histidine kinase-related protein, C-terminal PF553_15755 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain PF553_15760 IPR039420 Transcriptional regulatory protein WalR-like PF553_15760 IPR001789 Signal transduction response regulator, receiver domain PF553_15760 IPR001867 OmpR/PhoB-type DNA-binding domain PF553_15760 IPR011006 CheY-like superfamily PF553_15760 IPR036388 Winged helix-like DNA-binding domain superfamily PF553_15770 IPR009057 Homeobox-like domain superfamily PF553_15780 IPR024474 Zinc-finger binding domain of transposase IS66 PF553_15780 IPR024463 Transposase TnpC, homeodomain PF553_15780 IPR004291 Transposase, IS66 PF553_15780 IPR039552 Transposase IS66, C-terminal PF553_15795 IPR024463 Transposase TnpC, homeodomain PF553_15795 IPR039552 Transposase IS66, C-terminal PF553_15795 IPR004291 Transposase, IS66 PF553_15795 IPR024474 Zinc-finger binding domain of transposase IS66 PF553_15805 IPR009057 Homeobox-like domain superfamily PF553_15820 IPR002641 Patatin-like phospholipase domain PF553_15820 IPR016035 Acyl transferase/acyl hydrolase/lysophospholipase PF553_15820 IPR001423 Lysophospholipase patatin, conserved site PF553_15830 IPR018080 Band 7/stomatin-like, conserved site PF553_15830 IPR036013 Band 7/SPFH domain superfamily PF553_15830 IPR001972 Stomatin family PF553_15830 IPR001107 Band 7 domain PF553_15835 IPR038056 YjbR-like superfamily PF553_15835 IPR007351 Uncharacterised protein YjbR PF553_15840 IPR033749 Polyprenyl synthetase, conserved site PF553_15840 IPR008949 Isoprenoid synthase domain superfamily PF553_15840 IPR000092 Polyprenyl synthetase PF553_15845 IPR007400 PrpF protein PF553_15845 IPR012709 2-methyl-aconitate isomerase PrpF PF553_15850 IPR004841 Amino acid permease/ SLC12A domain PF553_15850 IPR004840 Amino acid permease, conserved site PF553_15885 IPR002818 DJ-1/PfpI PF553_15885 IPR017283 Protein/nucleic acid deglycase HchA PF553_15885 IPR029062 Class I glutamine amidotransferase-like PF553_15890 IPR016039 Thiolase-like PF553_15890 IPR006162 Phosphopantetheine attachment site PF553_15890 IPR020841 Polyketide synthase, beta-ketoacyl synthase domain PF553_15890 IPR015083 Polyketide synthase, docking domain PF553_15890 IPR020806 Polyketide synthase, phosphopantetheine-binding domain PF553_15890 IPR013968 Polyketide synthase, ketoreductase domain PF553_15890 IPR020843 Polyketide synthase, enoylreductase domain PF553_15890 IPR042104 Polyketide synthase, dehydratase domain superfamily PF553_15890 IPR020807 Polyketide synthase, dehydratase domain PF553_15890 IPR009081 Phosphopantetheine binding ACP domain PF553_15890 IPR036291 NAD(P)-binding domain superfamily PF553_15890 IPR014030 Beta-ketoacyl synthase, N-terminal PF553_15890 IPR014031 Beta-ketoacyl synthase, C-terminal PF553_15890 IPR018201 Beta-ketoacyl synthase, active site PF553_15890 IPR011032 GroES-like superfamily PF553_15890 IPR015357 Erythronolide synthase, docking PF553_15890 IPR036347 Erythronolide synthase, docking domain superfamily PF553_15890 IPR013154 Alcohol dehydrogenase, N-terminal PF553_15890 IPR016035 Acyl transferase/acyl hydrolase/lysophospholipase PF553_15890 IPR014043 Acyl transferase PF553_15890 IPR036736 ACP-like superfamily PF553_15890 IPR001227 Acyl transferase domain superfamily PF553_15890 IPR032821 Ketoacyl-synthetase, C-terminal extension PF553_15890 IPR016036 Malonyl-CoA ACP transacylase, ACP-binding PF553_15895 IPR018060 DNA binding HTH domain, AraC-type PF553_15895 IPR009057 Homeobox-like domain superfamily PF553_15895 IPR009594 Transcription regulator HTH, AraC, N-terminal PF553_15900 IPR003824 Undecaprenyl-diphosphatase UppP PF553_15920 IPR003680 Flavodoxin-like fold PF553_15920 IPR029039 Flavoprotein-like superfamily PF553_15930 IPR036412 HAD-like superfamily PF553_15930 IPR023214 HAD superfamily PF553_15930 IPR011863 Phosphoserine phosphatase/homoserine phosphotransferase bifunctional protein PF553_15935 IPR011798 Adenosine 5'-phosphosulphate reductase PF553_15935 IPR004511 Phosphoadenosine phosphosulphate/adenosine 5'-phosphosulphate reductase PF553_15935 IPR002500 Phosphoadenosine phosphosulphate reductase PF553_15935 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold PF553_15940 IPR014292 Acyltransferase, WS/DGAT/MGAT PF553_15940 IPR004255 O-acyltransferase, WSD1, N-terminal PF553_15940 IPR009721 O-acyltransferase WSD1, C-terminal PF553_15950 IPR012340 Nucleic acid-binding, OB-fold PF553_15950 IPR019307 RNA-binding protein AU-1/Ribonuclease E/G PF553_15950 IPR003029 S1 domain PF553_15950 IPR022967 RNA-binding domain, S1 PF553_15950 IPR004659 Ribonuclease E/G PF553_15955 IPR029001 Inosine triphosphate pyrophosphatase-like PF553_15955 IPR003697 Nucleoside triphosphate pyrophosphatase Maf-like protein PF553_15960 IPR007227 Cell shape-determining protein MreD PF553_15960 IPR026034 Cell shape-determining protein MreD, proteobacterial type PF553_15965 IPR042177 Cell/Rod shape-determining protein MreC, domain 1 PF553_15965 IPR042175 Cell/Rod shape-determining protein MreC, domain 2 PF553_15965 IPR007221 Rod shape-determining protein MreC PF553_15970 IPR004753 Cell shape determining protein MreB PF553_15975 IPR003837 Glu-tRNAGln amidotransferase C subunit PF553_15975 IPR036113 Glu-tRNAGln amidotransferase superfamily, subunit C PF553_15980 IPR020556 Amidase, conserved site PF553_15980 IPR000120 Amidase PF553_15980 IPR023631 Amidase signature domain PF553_15980 IPR036928 Amidase signature (AS) superfamily PF553_15980 IPR004412 Glutamyl-tRNA(Gln) amidotransferase A subunit PF553_15985 IPR004413 Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase, B subunit PF553_15985 IPR003789 Aspartyl/glutamyl-tRNA amidotransferase subunit B-like PF553_15985 IPR006075 Aspartyl/Glutamyl-tRNA(Gln) amidotransferase, subunit B/E, catalytic PF553_15985 IPR018027 Asn/Gln amidotransferase PF553_15985 IPR042114 Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase, C-terminal, domain 1 PF553_15985 IPR017959 Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase, subunit B /E PF553_15985 IPR023168 Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase, C-terminal, domain 2 PF553_15985 IPR017958 Glutamyl-tRNA(Gln) amidotransferase, subunit B, conserved site PF553_15985 IPR014746 Glutamine synthetase/guanido kinase, catalytic domain PF553_16010 IPR009248 SbmA/BacA-like PF553_16010 IPR036640 ABC transporter type 1, transmembrane domain superfamily PF553_16015 IPR001926 Pyridoxal-phosphate dependent enzyme PF553_16015 IPR002912 ACT domain PF553_16015 IPR000634 Serine/threonine dehydratase, pyridoxal-phosphate-binding site PF553_16015 IPR005789 Threonine dehydratase, catabolic PF553_16015 IPR036052 Tryptophan synthase beta subunit-like PLP-dependent enzyme PF553_16020 IPR016035 Acyl transferase/acyl hydrolase/lysophospholipase PF553_16020 IPR001423 Lysophospholipase patatin, conserved site PF553_16020 IPR002641 Patatin-like phospholipase domain PF553_16025 IPR001463 Sodium:alanine symporter PF553_16040 IPR000415 Nitroreductase-like PF553_16040 IPR029479 Nitroreductase PF553_16045 IPR011701 Major facilitator superfamily PF553_16045 IPR036259 MFS transporter superfamily PF553_16045 IPR004734 Multidrug resistance protein PF553_16045 IPR004812 Drug resistance transporter Bcr/CmlA subfamily PF553_16045 IPR020846 Major facilitator superfamily domain PF553_16050 IPR010019 Integral membrane protein, YccS PF553_16050 IPR010020 Integral membrane protein, YccS/YhfK PF553_16050 IPR032692 Integral membrane protein YccS, N-terminal PF553_16060 IPR008254 Flavodoxin/nitric oxide synthase PF553_16060 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase PF553_16060 IPR017927 FAD-binding domain, ferredoxin reductase-type PF553_16060 IPR017938 Riboflavin synthase-like beta-barrel PF553_16060 IPR001433 Oxidoreductase FAD/NAD(P)-binding PF553_16060 IPR023173 NADPH-cytochrome p450 reductase, FAD-binding, alpha-helical domain superfamily PF553_16060 IPR039261 Ferredoxin-NADP reductase (FNR), nucleotide-binding domain PF553_16060 IPR029039 Flavoprotein-like superfamily PF553_16060 IPR029758 Sulphite reductase [NADPH] flavoprotein, alpha chain, Proteobacteria PF553_16060 IPR010199 Sulphite reductase [NADPH] flavoprotein, alpha chain PF553_16060 IPR003097 Sulfite reductase [NADPH] flavoprotein alpha-component-like, FAD-binding PF553_16060 IPR001094 Flavodoxin-like PF553_16100 IPR038063 L,D-transpeptidase catalytic domain-like PF553_16100 IPR041597 L,D-transpeptidase C-terminal domain PF553_16100 IPR005490 L,D-transpeptidase catalytic domain PF553_16105 IPR007401 Protein of unknown function DUF454 PF553_16115 IPR012556 Entericidin A/B PF553_16120 IPR011650 Peptidase M20, dimerisation domain PF553_16120 IPR005941 Succinyl-diaminopimelate desuccinylase, proteobacteria PF553_16120 IPR002933 Peptidase M20 PF553_16120 IPR036264 Bacterial exopeptidase dimerisation domain PF553_16130 IPR036641 HPT domain superfamily PF553_16130 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain PF553_16130 IPR004358 Signal transduction histidine kinase-related protein, C-terminal PF553_16130 IPR001789 Signal transduction response regulator, receiver domain PF553_16130 IPR005467 Histidine kinase domain PF553_16130 IPR002545 CheW-like domain PF553_16130 IPR003594 Histidine kinase/HSP90-like ATPase PF553_16130 IPR011006 CheY-like superfamily PF553_16130 IPR036061 CheW-like domain superfamily PF553_16130 IPR036890 Histidine kinase/HSP90-like ATPase superfamily PF553_16135 IPR004090 Chemotaxis methyl-accepting receptor PF553_16135 IPR003660 HAMP domain PF553_16135 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain PF553_16135 IPR029095 NarX-like, N-terminal PF553_16140 IPR002545 CheW-like domain PF553_16140 IPR039315 Chemotaxis protein CheW PF553_16140 IPR036061 CheW-like domain superfamily PF553_16145 IPR011006 CheY-like superfamily PF553_16145 IPR001789 Signal transduction response regulator, receiver domain PF553_16150 IPR001789 Signal transduction response regulator, receiver domain PF553_16150 IPR011006 CheY-like superfamily PF553_16165 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains PF553_16165 IPR001036 Acriflavin resistance protein PF553_16170 IPR004154 Anticodon-binding PF553_16170 IPR036621 Anticodon-binding domain superfamily PF553_16170 IPR006195 Aminoacyl-tRNA synthetase, class II PF553_16170 IPR002314 Aminoacyl-tRNA synthetase, class II (G/ P/ S/T) PF553_16170 IPR004500 Prolyl-tRNA synthetase, class IIa, bacterial-type PF553_16170 IPR023717 Prolyl-tRNA synthetase, class IIa, type 1 PF553_16170 IPR033730 Prokaryote proline-tRNA ligase core domain PF553_16170 IPR036754 YbaK/aminoacyl-tRNA synthetase-associated domain superfamily PF553_16170 IPR007214 YbaK/aminoacyl-tRNA synthetase-associated domain PF553_16170 IPR002316 Proline-tRNA ligase, class IIa PF553_16175 IPR010879 Domain of unknown function DUF1508 PF553_16175 IPR036913 YegP-like superfamily PF553_16180 IPR013987 PhnA protein, N-terminal PF553_16180 IPR013988 PhnA protein, C-terminal PF553_16180 IPR004624 PhnA protein PF553_16185 IPR007438 Protein of unknown function DUF488 PF553_16195 IPR028896 Aminomethyltransferase-like PF553_16195 IPR029043 Glycine cleavage T-protein/YgfZ, C-terminal PF553_16195 IPR017703 YgfZ/GcvT conserved site PF553_16195 IPR006222 Aminomethyltransferase, folate-binding domain PF553_16200 IPR033954 Disulphide bond isomerase, DsbC/G PF553_16200 IPR018950 Disulphide bond isomerase, DsbC/G, N-terminal PF553_16200 IPR036249 Thioredoxin-like superfamily PF553_16200 IPR017937 Thioredoxin, conserved site PF553_16200 IPR009094 Disulphide bond isomerase DsbC/G, N-terminal domain superfamily PF553_16200 IPR012336 Thioredoxin-like fold PF553_16210 IPR004776 Membrane transport protein PF553_16215 IPR023663 NADPH dehydrogenase PF553_16215 IPR013785 Aldolase-type TIM barrel PF553_16215 IPR001155 NADH:flavin oxidoreductase/NADH oxidase, N-terminal PF553_16220 IPR039426 Vitamin B12 transporter BtuB-like PF553_16220 IPR012910 TonB-dependent receptor, plug domain PF553_16220 IPR037066 TonB-dependent receptor, plug domain superfamily PF553_16220 IPR000531 TonB-dependent receptor-like, beta-barrel PF553_16220 IPR036942 TonB-dependent receptor-like, beta-barrel domain superfamily PF553_16220 IPR010105 TonB-dependent siderophore receptor PF553_16225 IPR011034 Formyl transferase-like, C-terminal domain superfamily PF553_16225 IPR003180 Methylpurine-DNA glycosylase PF553_16225 IPR036995 Methylpurine-DNA glycosylase superfamily PF553_16230 IPR000214 Zinc finger, DNA glycosylase/AP lyase-type PF553_16230 IPR010663 Zinc finger, FPG/IleRS-type PF553_16230 IPR010979 Ribosomal protein S13-like, H2TH PF553_16230 IPR035937 MutM-like, N-terminal PF553_16230 IPR012319 Formamidopyrimidine-DNA glycosylase, catalytic domain PF553_16230 IPR020629 Formamidopyrimidine-DNA glycosylase PF553_16230 IPR015886 DNA glycosylase/AP lyase, H2TH DNA-binding PF553_16235 IPR023059 Foldase protein PrsA PF553_16235 IPR023058 Peptidyl-prolyl cis-trans isomerase, PpiC-type, conserved site PF553_16235 IPR027304 Trigger factor/SurA domain superfamily PF553_16235 IPR000297 Peptidyl-prolyl cis-trans isomerase, PpiC-type PF553_16245 IPR019823 Large-conductance mechanosensitive channel, conserved site PF553_16245 IPR001185 Large-conductance mechanosensitive channel PF553_16245 IPR037673 Large-conductance mechanosensitive channel/anditomin synthesis protein L PF553_16245 IPR036019 Gated mechanosensitive channel PF553_16250 IPR042116 GTP-binding protein TypA/BipA, C-terminal PF553_16250 IPR009000 Translation protein, beta-barrel domain superfamily PF553_16250 IPR006298 GTP-binding protein TypA PF553_16250 IPR035651 BipA, domain V PF553_16250 IPR035647 EF-G domain III/V-like PF553_16250 IPR000640 Elongation factor EFG, domain V-like PF553_16250 IPR004161 Translation elongation factor EFTu-like, domain 2 PF553_16250 IPR031157 Tr-type G domain, conserved site PF553_16250 IPR027417 P-loop containing nucleoside triphosphate hydrolase PF553_16250 IPR005225 Small GTP-binding protein domain PF553_16250 IPR000795 Transcription factor, GTP-binding domain PF553_16255 IPR006042 Xanthine/uracil permease PF553_16255 IPR006043 Xanthine/uracil/vitamin C permease PF553_16260 IPR023543 rRNA small subunit methyltransferase C PF553_16260 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase PF553_16260 IPR007848 Methyltransferase small domain PF553_16260 IPR013675 Methyltransferase small, N-terminal PF553_16260 IPR002052 DNA methylase, N-6 adenine-specific, conserved site PF553_16265 IPR004840 Amino acid permease, conserved site PF553_16265 IPR004841 Amino acid permease/ SLC12A domain PF553_16270 IPR001233 tRNA-splicing ligase, RtcB PF553_16270 IPR036025 tRNA-splicing ligase RtcB-like superfamily PF553_16280 IPR036737 OmpA-like domain superfamily PF553_16280 IPR006665 OmpA-like domain PF553_16280 IPR006664 Outer membrane protein, bacterial PF553_16280 IPR027385 Outer membrane protein beta-barrel domain PF553_16280 IPR011250 Outer membrane protein/outer membrane enzyme PagP, beta-barrel PF553_16290 IPR020617 Thiolase, C-terminal PF553_16290 IPR020613 Thiolase, conserved site PF553_16290 IPR020610 Thiolase, active site PF553_16290 IPR020615 Thiolase, acyl-enzyme intermediate active site PF553_16290 IPR016039 Thiolase-like PF553_16290 IPR002155 Thiolase PF553_16290 IPR020616 Thiolase, N-terminal PF553_16300 IPR000390 Small multidrug resistance protein family PF553_16310 IPR005117 Nitrite/Sulfite reductase ferredoxin-like domain PF553_16310 IPR036136 Nitrite/Sulfite reductase ferredoxin-like domain superfamily PF553_16310 IPR006067 Nitrite/sulphite reductase 4Fe-4S domain PF553_16310 IPR006066 Nitrite/sulphite reductase iron-sulphur/sirohaem-binding site PF553_16315 IPR002372 Pyrrolo-quinoline quinone repeat PF553_16315 IPR018391 Pyrrolo-quinoline quinone beta-propeller repeat PF553_16315 IPR017511 PQQ-dependent membrane bound dehydrogenase PF553_16315 IPR011047 Quinoprotein alcohol dehydrogenase-like superfamily PF553_16315 IPR001479 Quinoprotein dehydrogenase, conserved site PF553_16320 IPR038673 Carbohydrate-selective porin OprB superfamily PF553_16320 IPR007049 Carbohydrate-selective porin OprB PF553_16325 IPR023606 CoA-transferase family III domain superfamily PF553_16325 IPR003673 CoA-transferase family III PF553_16330 IPR009057 Homeobox-like domain superfamily PF553_16330 IPR037923 Transcription regulator HTH-like PF553_16330 IPR020449 Transcription regulator HTH, AraC- type PF553_16330 IPR018062 HTH domain AraC-type, conserved site PF553_16330 IPR018060 DNA binding HTH domain, AraC-type PF553_16330 IPR003313 AraC-type arabinose-binding/dimerisation domain PF553_16335 IPR020616 Thiolase, N-terminal PF553_16335 IPR020613 Thiolase, conserved site PF553_16335 IPR020617 Thiolase, C-terminal PF553_16335 IPR020615 Thiolase, acyl-enzyme intermediate active site PF553_16335 IPR016039 Thiolase-like PF553_16335 IPR020610 Thiolase, active site PF553_16335 IPR002155 Thiolase PF553_16340 IPR036291 NAD(P)-binding domain superfamily PF553_16340 IPR012802 Fatty oxidation complex, alpha subunit FadJ PF553_16340 IPR001753 Enoyl-CoA hydratase/isomerase PF553_16340 IPR006176 3-hydroxyacyl-CoA dehydrogenase, NAD binding PF553_16340 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily PF553_16340 IPR006108 3-hydroxyacyl-CoA dehydrogenase, C-terminal PF553_16340 IPR029045 ClpP/crotonase-like domain superfamily PF553_16340 IPR006180 3-hydroxyacyl-CoA dehydrogenase, conserved site PF553_16365 IPR004254 AdipoR/Haemolysin-III-related PF553_16365 IPR005744 Hly-III PF553_16370 IPR005829 Sugar transporter, conserved site PF553_16370 IPR004736 MFS transporter, metabolite:H symporter PF553_16370 IPR005828 Major facilitator, sugar transporter-like PF553_16370 IPR020846 Major facilitator superfamily domain PF553_16370 IPR011701 Major facilitator superfamily PF553_16370 IPR036259 MFS transporter superfamily PF553_16380 IPR004027 SEC-C motif PF553_16380 IPR000185 Protein translocase subunit SecA PF553_16380 IPR020937 SecA conserved site PF553_16380 IPR014018 SecA motor DEAD PF553_16380 IPR011130 SecA, preprotein cross-linking domain PF553_16380 IPR011116 SecA Wing/Scaffold PF553_16380 IPR036266 SecA, Wing/Scaffold superfamily PF553_16380 IPR036670 SecA, preprotein cross-linking domain superfamily PF553_16380 IPR027417 P-loop containing nucleoside triphosphate hydrolase PF553_16380 IPR011115 SecA DEAD-like, N-terminal PF553_16385 IPR013766 Thioredoxin domain PF553_16385 IPR036249 Thioredoxin-like superfamily PF553_16385 IPR022915 Peroxiredoxin, TDXH subfamily PF553_16385 IPR019479 Peroxiredoxin, C-terminal PF553_16385 IPR000866 Alkyl hydroperoxide reductase subunit C/ Thiol specific antioxidant PF553_16385 IPR024706 Peroxiredoxin, AhpC-type PF553_16390 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like PF553_16390 IPR001279 Metallo-beta-lactamase PF553_16405 IPR001645 Folylpolyglutamate synthetase PF553_16405 IPR036615 Mur ligase, C-terminal domain superfamily PF553_16405 IPR004101 Mur ligase, C-terminal PF553_16405 IPR036565 Mur-like, catalytic domain superfamily PF553_16405 IPR018109 Folylpolyglutamate synthetase, conserved site PF553_16405 IPR013221 Mur ligase, central PF553_16410 IPR011762 Acetyl-coenzyme A carboxyltransferase, N-terminal PF553_16410 IPR034733 Acetyl-CoA carboxylase PF553_16410 IPR000438 Acetyl-CoA carboxylase carboxyl transferase, beta subunit PF553_16410 IPR029045 ClpP/crotonase-like domain superfamily PF553_16415 IPR013785 Aldolase-type TIM barrel PF553_16415 IPR018204 Tryptophan synthase, alpha chain, active site PF553_16415 IPR002028 Tryptophan synthase, alpha chain PF553_16415 IPR011060 Ribulose-phosphate binding barrel PF553_16440 IPR001926 Pyridoxal-phosphate dependent enzyme PF553_16440 IPR006653 Tryptophan synthase, beta chain, conserved site PF553_16440 IPR006654 Tryptophan synthase, beta chain PF553_16440 IPR023026 Tryptophan synthase beta chain/beta chain-like PF553_16440 IPR036052 Tryptophan synthase beta subunit-like PLP-dependent enzyme PF553_16445 IPR013785 Aldolase-type TIM barrel PF553_16445 IPR011060 Ribulose-phosphate binding barrel PF553_16445 IPR001240 N-(5'phosphoribosyl) anthranilate isomerase (PRAI) PF553_16450 IPR010917 TonB-dependent receptor, conserved site PF553_16450 IPR036942 TonB-dependent receptor-like, beta-barrel domain superfamily PF553_16450 IPR010916 TonB box, conserved site PF553_16450 IPR000531 TonB-dependent receptor-like, beta-barrel PF553_16450 IPR037066 TonB-dependent receptor, plug domain superfamily PF553_16450 IPR012910 TonB-dependent receptor, plug domain PF553_16450 IPR039426 Vitamin B12 transporter BtuB-like PF553_16450 IPR010101 TonB-dependent vitamin B12 transporter BtuB PF553_16455 IPR029499 ATP:cob(I)alamin adenosyltransferase, PduO-type PF553_16455 IPR036451 Cobalamin adenosyltransferase-like superfamily PF553_16455 IPR016030 Cobalamin adenosyltransferase-like PF553_16475 IPR003846 Protein adenylyltransferase SelO PF553_16480 IPR011006 CheY-like superfamily PF553_16480 IPR036388 Winged helix-like DNA-binding domain superfamily PF553_16480 IPR001789 Signal transduction response regulator, receiver domain PF553_16480 IPR016032 Signal transduction response regulator, C-terminal effector PF553_16480 IPR001867 OmpR/PhoB-type DNA-binding domain PF553_16480 IPR039420 Transcriptional regulatory protein WalR-like PF553_16485 IPR003660 HAMP domain PF553_16485 IPR003594 Histidine kinase/HSP90-like ATPase PF553_16485 IPR036890 Histidine kinase/HSP90-like ATPase superfamily PF553_16485 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain PF553_16485 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily PF553_16485 IPR004358 Signal transduction histidine kinase-related protein, C-terminal PF553_16485 IPR005467 Histidine kinase domain PF553_16495 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily PF553_16495 IPR037069 Acyl-CoA dehydrogenase/oxidase, N-terminal domain superfamily PF553_16495 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal PF553_16495 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal PF553_16495 IPR036250 Acyl-CoA dehydrogenase-like, C-terminal PF553_16495 IPR025878 Acetyl-CoA dehydrogenase-like C-terminal domain PF553_16495 IPR006091 Acyl-CoA oxidase/dehydrogenase, central domain PF553_16500 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal PF553_16500 IPR025878 Acetyl-CoA dehydrogenase-like C-terminal domain PF553_16500 IPR006091 Acyl-CoA oxidase/dehydrogenase, central domain PF553_16500 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal PF553_16500 IPR037069 Acyl-CoA dehydrogenase/oxidase, N-terminal domain superfamily PF553_16500 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily PF553_16500 IPR036250 Acyl-CoA dehydrogenase-like, C-terminal PF553_16505 IPR020948 Phosphate-starvation-induced PsiE-like PF553_16505 IPR009315 Phosphate-starvation-induced PsiE PF553_16525 IPR000531 TonB-dependent receptor-like, beta-barrel PF553_16525 IPR037066 TonB-dependent receptor, plug domain superfamily PF553_16525 IPR012910 TonB-dependent receptor, plug domain PF553_16525 IPR039426 Vitamin B12 transporter BtuB-like PF553_16535 IPR029351 GAD domain PF553_16535 IPR004364 Aminoacyl-tRNA synthetase, class II (D/K/N) PF553_16535 IPR006195 Aminoacyl-tRNA synthetase, class II PF553_16535 IPR004524 Aspartate-tRNA ligase, type 1 PF553_16535 IPR002312 Aspartyl/Asparaginyl-tRNA synthetase, class IIb PF553_16535 IPR004115 GAD-like domain superfamily PF553_16535 IPR004365 OB-fold nucleic acid binding domain, AA-tRNA synthetase-type PF553_16535 IPR012340 Nucleic acid-binding, OB-fold PF553_16540 IPR031358 Stealth protein CR1, conserved region 1 PF553_16540 IPR021520 Stealth protein CR2, conserved region 2 PF553_16540 IPR031357 Stealth protein CR3, conserved region 3 PF553_16565 IPR001296 Glycosyl transferase, family 1 PF553_16565 IPR028098 Glycosyltransferase subfamily 4-like, N-terminal domain PF553_16570 IPR001173 Glycosyltransferase 2-like PF553_16570 IPR029044 Nucleotide-diphospho-sugar transferases PF553_16575 IPR002509 NodB homology domain PF553_16575 IPR011330 Glycoside hydrolase/deacetylase, beta/alpha-barrel PF553_16590 IPR033939 Branched-chain aminotransferase PF553_16590 IPR005785 Branched-chain amino acid aminotransferase I PF553_16590 IPR036038 Aminotransferase-like, PLP-dependent enzymes PF553_16590 IPR018300 Aminotransferase, class IV, conserved site PF553_16590 IPR001544 Aminotransferase class IV PF553_16595 IPR013546 PII-uridylyltransferase/Glutamine-synthetase adenylyltransferase PF553_16595 IPR023057 Bifunctional glutamine synthetase adenylyltransferase/adenylyl-removing enzyme PF553_16595 IPR005190 Glutamate-ammonia ligase adenylyltransferase, repeated domain PF553_16600 IPR036249 Thioredoxin-like superfamily PF553_16600 IPR004358 Signal transduction histidine kinase-related protein, C-terminal PF553_16600 IPR023527 Adaptive-response sensory-kinase SasA PF553_16600 IPR011649 KaiB domain PF553_16600 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily PF553_16600 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain PF553_16600 IPR005467 Histidine kinase domain PF553_16600 IPR036890 Histidine kinase/HSP90-like ATPase superfamily PF553_16600 IPR003594 Histidine kinase/HSP90-like ATPase PF553_16610 IPR003699 S-adenosylmethionine:tRNA ribosyltransferase-isomerase, QueA PF553_16610 IPR042118 QueA, domain 1 PF553_16610 IPR042119 QueA, domain 2 PF553_16610 IPR036100 S-adenosylmethionine:tRNA ribosyltransferase-isomerase, QueA superfamily PF553_16625 IPR004803 tRNA-guanine transglycosylase PF553_16625 IPR036511 Queuine tRNA-ribosyltransferase-like PF553_16625 IPR002616 tRNA-guanine(15) transglycosylase-like PF553_16630 IPR003849 Preprotein translocase YajC PF553_16635 IPR022646 Protein-export membrane protein SecD/SecF/SecDF, conserved site PF553_16635 IPR022645 Protein-export membrane protein SecD/SecF, bacterial PF553_16635 IPR022813 Protein-export membrane protein SecD/SecF, archaeal and bacterial PF553_16635 IPR027398 SecD export protein N-terminal TM domain PF553_16635 IPR005791 Protein translocase subunit SecD PF553_16640 IPR005665 Protein-export membrane protein SecF, bacterial PF553_16640 IPR022646 Protein-export membrane protein SecD/SecF/SecDF, conserved site PF553_16640 IPR022645 Protein-export membrane protein SecD/SecF, bacterial PF553_16640 IPR022813 Protein-export membrane protein SecD/SecF, archaeal and bacterial PF553_16645 IPR003382 Flavoprotein PF553_16645 IPR035929 CoaB-like superfamily PF553_16645 IPR036551 Flavin prenyltransferase-like PF553_16645 IPR005252 Coenzyme A biosynthesis bifunctional protein CoaBC PF553_16645 IPR007085 DNA/pantothenate metabolism flavoprotein, C-terminal PF553_16650 IPR037518 MPN domain PF553_16650 IPR025657 RadC-like JAB domain PF553_16650 IPR010994 RuvA domain 2-like PF553_16650 IPR001405 Uncharacterised protein family UPF0758 PF553_16655 IPR021134 Bestrophin/UPF0187 PF553_16660 IPR004013 PHP domain PF553_16660 IPR003141 Polymerase/histidinol phosphatase, N-terminal PF553_16660 IPR016195 Polymerase/histidinol phosphatase-like PF553_16665 IPR006008 Intracellular septation protein A PF553_16670 IPR011008 Dimeric alpha-beta barrel PF553_16670 IPR005545 YCII-related PF553_16680 IPR006076 FAD dependent oxidoreductase PF553_16680 IPR036188 FAD/NAD(P)-binding domain superfamily PF553_16680 IPR008471 MnmC-like methyltransferase PF553_16680 IPR023032 tRNA 5-methylaminomethyl-2-thiouridine biosynthesis bifunctional protein MnmC PF553_16680 IPR017610 tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal PF553_16690 IPR007551 Protein of unknown function DUF520 PF553_16690 IPR035571 UPF0234-like, C-terminal PF553_16690 IPR035570 UPF0234, N-terminal PF553_16690 IPR036183 YajQ-like superfamily PF553_16700 IPR006683 Thioesterase domain PF553_16700 IPR040170 Cytosolic acyl coenzyme A thioester hydrolase PF553_16700 IPR029069 HotDog domain superfamily PF553_16700 IPR033120 Hotdog acyl-CoA thioesterase (ACOT)-type domain PF553_16705 IPR005746 Thioredoxin PF553_16705 IPR036249 Thioredoxin-like superfamily PF553_16705 IPR017937 Thioredoxin, conserved site PF553_16705 IPR013766 Thioredoxin domain PF553_16710 IPR029058 Alpha/Beta hydrolase fold PF553_16710 IPR000073 Alpha/beta hydrolase fold-1 PF553_16715 IPR005939 Beta-lactamase hydrolase-like PF553_16715 IPR001279 Metallo-beta-lactamase PF553_16715 IPR029021 Protein-tyrosine phosphatase-like PF553_16715 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like PF553_16725 IPR012999 Pyridine nucleotide-disulphide oxidoreductase, class I, active site PF553_16725 IPR001100 Pyridine nucleotide-disulphide oxidoreductase, class I PF553_16725 IPR004099 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain PF553_16725 IPR016156 FAD/NAD-linked reductase, dimerisation domain superfamily PF553_16725 IPR023753 FAD/NAD(P)-binding domain PF553_16725 IPR036188 FAD/NAD(P)-binding domain superfamily PF553_16725 IPR006258 Dihydrolipoamide dehydrogenase PF553_16760 IPR033417 Periplasmic sensor domain CHASE8 PF553_16760 IPR000160 GGDEF domain PF553_16760 IPR003660 HAMP domain PF553_16760 IPR029787 Nucleotide cyclase PF553_16765 IPR000498 Outer membrane protein OmpA-like, transmembrane domain PF553_16765 IPR036737 OmpA-like domain superfamily PF553_16765 IPR011250 Outer membrane protein/outer membrane enzyme PagP, beta-barrel PF553_16765 IPR006665 OmpA-like domain PF553_16765 IPR002368 Outer membrane protein, OmpA PF553_16765 IPR006690 Outer membrane protein, OmpA-like, conserved site PF553_16765 IPR006664 Outer membrane protein, bacterial PF553_16770 IPR019546 Twin-arginine translocation pathway, signal sequence, bacterial/archaeal PF553_16770 IPR029052 Metallo-dependent phosphatase-like PF553_16770 IPR004843 Calcineurin-like phosphoesterase domain, ApaH type PF553_16770 IPR006311 Twin-arginine translocation pathway, signal sequence PF553_16775 IPR030871 Cardiolipin synthase C PF553_16775 IPR025202 Phospholipase D-like domain PF553_16775 IPR001736 Phospholipase D/Transphosphatidylase PF553_16785 IPR035647 EF-G domain III/V-like PF553_16785 IPR030394 HflX-type guanine nucleotide-binding (G) domain PF553_16785 IPR032305 GTP-binding protein, middle domain PF553_16785 IPR006073 GTP binding domain PF553_16785 IPR016496 GTPase HflX PF553_16785 IPR025121 GTPase HflX, N-terminal PF553_16785 IPR027417 P-loop containing nucleoside triphosphate hydrolase PF553_16785 IPR042108 GTPase HflX, N-terminal domain superfamily PF553_16805 IPR004617 Bis(5'-nucleosyl)-tetraphosphatase (symmetrical) PF553_16805 IPR004843 Calcineurin-like phosphoesterase domain, ApaH type PF553_16805 IPR029052 Metallo-dependent phosphatase-like PF553_16810 IPR023165 rRNA adenine dimethylase-like PF553_16810 IPR001737 Ribosomal RNA adenine methyltransferase KsgA/Erm PF553_16810 IPR020596 Ribosomal RNA adenine methylase transferase, conserved site PF553_16810 IPR020598 Ribosomal RNA adenine methylase transferase, N-terminal PF553_16810 IPR011530 Ribosomal RNA adenine dimethylase PF553_16810 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase PF553_16815 IPR037510 4-hydroxythreonine-4-phosphate dehydrogenase PF553_16815 IPR005255 PdxA family PF553_16820 IPR036899 Ribosomal protein L13 superfamily PF553_16820 IPR005823 Ribosomal protein L13, bacterial-type PF553_16820 IPR005822 Ribosomal protein L13 PF553_16825 IPR020568 Ribosomal protein S5 domain 2-type fold PF553_16825 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup PF553_16825 IPR000754 Ribosomal protein S9 PF553_16825 IPR023035 Ribosomal protein S9, bacterial/plastid PF553_16825 IPR020574 Ribosomal protein S9, conserved site PF553_16830 IPR010987 Glutathione S-transferase, C-terminal-like PF553_16830 IPR036282 Glutathione S-transferase, C-terminal domain superfamily PF553_16830 IPR040079 Glutathione Transferase family PF553_16830 IPR004045 Glutathione S-transferase, N-terminal PF553_16830 IPR004046 Glutathione S-transferase, C-terminal PF553_16830 IPR034341 Stringent starvation protein A, N-terminal PF553_16830 IPR036249 Thioredoxin-like superfamily PF553_16835 IPR036760 SspB-like superfamily PF553_16835 IPR007481 Stringent starvation protein B PF553_16845 IPR011764 Biotin carboxylation domain PF553_16845 IPR011761 ATP-grasp fold PF553_16845 IPR011053 Single hybrid motif PF553_16845 IPR011054 Rudiment single hybrid motif PF553_16845 IPR005481 Biotin carboxylase-like, N-terminal domain PF553_16845 IPR001882 Biotin-binding site PF553_16845 IPR016185 Pre-ATP-grasp domain superfamily PF553_16845 IPR005482 Biotin carboxylase, C-terminal PF553_16845 IPR000089 Biotin/lipoyl attachment PF553_16845 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain PF553_16855 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal PF553_16855 IPR037069 Acyl-CoA dehydrogenase/oxidase, N-terminal domain superfamily PF553_16855 IPR036250 Acyl-CoA dehydrogenase-like, C-terminal PF553_16855 IPR006091 Acyl-CoA oxidase/dehydrogenase, central domain PF553_16855 IPR006089 Acyl-CoA dehydrogenase, conserved site PF553_16855 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal PF553_16855 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily PF553_16860 IPR011763 Acetyl-coenzyme A carboxyltransferase, C-terminal PF553_16860 IPR011762 Acetyl-coenzyme A carboxyltransferase, N-terminal PF553_16860 IPR034733 Acetyl-CoA carboxylase PF553_16860 IPR029045 ClpP/crotonase-like domain superfamily PF553_16865 IPR036291 NAD(P)-binding domain superfamily PF553_16865 IPR002347 Short-chain dehydrogenase/reductase SDR PF553_16875 IPR036271 Tetracyclin repressor-like, C-terminal domain superfamily PF553_16875 IPR001647 DNA-binding HTH domain, TetR-type PF553_16875 IPR009057 Homeobox-like domain superfamily PF553_16875 IPR041490 HTH-type transcriptional repressor KstR2, C-terminal PF553_16880 IPR006089 Acyl-CoA dehydrogenase, conserved site PF553_16880 IPR006091 Acyl-CoA oxidase/dehydrogenase, central domain PF553_16880 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal PF553_16880 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal PF553_16880 IPR037069 Acyl-CoA dehydrogenase/oxidase, N-terminal domain superfamily PF553_16880 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily PF553_16880 IPR036250 Acyl-CoA dehydrogenase-like, C-terminal PF553_16925 IPR004533 CDP-diacylglycerol--serine O-phosphatidyltransferase PF553_16925 IPR000462 CDP-alcohol phosphatidyltransferase PF553_16930 IPR002052 DNA methylase, N-6 adenine-specific, conserved site PF553_16930 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase PF553_16930 IPR007473 Ribosomal RNA large subunit methyltransferase J PF553_16950 IPR001557 L-lactate/malate dehydrogenase PF553_16950 IPR022383 Lactate/malate dehydrogenase, C-terminal PF553_16950 IPR001236 Lactate/malate dehydrogenase, N-terminal PF553_16950 IPR015955 Lactate dehydrogenase/glycoside hydrolase, family 4, C-terminal PF553_16950 IPR010945 Malate dehydrogenase, type 2 PF553_16950 IPR036291 NAD(P)-binding domain superfamily PF553_16960 IPR011055 Duplicated hybrid motif PF553_16960 IPR008258 Transglycosylase SLT domain 1 PF553_16960 IPR000189 Prokaryotic transglycosylase, active site PF553_16960 IPR010090 Phage tail tape measure protein PF553_16960 IPR016047 Peptidase M23 PF553_16960 IPR023346 Lysozyme-like domain superfamily PF553_16965 IPR002792 TRAM domain PF553_16965 IPR023404 Radical SAM, alpha/beta horseshoe PF553_16965 IPR006638 Elp3/MiaB/NifB PF553_16965 IPR005839 Methylthiotransferase PF553_16965 IPR020612 Methylthiotransferase, conserved site PF553_16965 IPR013848 Methylthiotransferase, N-terminal PF553_16965 IPR038135 Methylthiotransferase, N-terminal domain superfamily PF553_16965 IPR006463 tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase MiaB PF553_16965 IPR007197 Radical SAM PF553_16970 IPR027417 P-loop containing nucleoside triphosphate hydrolase PF553_16970 IPR003714 PhoH-like protein PF553_16975 IPR023091 Metalloprotease catalytic domain superfamily, predicted PF553_16975 IPR002036 Endoribonuclease YbeY PF553_16975 IPR020549 Endoribonuclease YbeY, conserved site PF553_16995 IPR010079 Xanthine phosphoribosyltransferase PF553_16995 IPR000836 Phosphoribosyltransferase domain PF553_16995 IPR029057 Phosphoribosyltransferase-like PF553_17000 IPR008254 Flavodoxin/nitric oxide synthase PF553_17000 IPR001226 Flavodoxin, conserved site PF553_17000 IPR029039 Flavoprotein-like superfamily PF553_17000 IPR010089 Flavoprotein WrbA-like PF553_17000 IPR005025 NADPH-dependent FMN reductase-like PF553_17005 IPR023679 Uncharacterised protein family UPF0761, bacterial PF553_17005 IPR017039 Virulence factor BrkB PF553_17010 IPR000620 EamA domain PF553_17015 IPR008917 Transcription factor, Skn-1-like, DNA-binding domain superfamily PF553_17015 IPR020449 Transcription regulator HTH, AraC- type PF553_17015 IPR011051 RmlC-like cupin domain superfamily PF553_17015 IPR018060 DNA binding HTH domain, AraC-type PF553_17015 IPR018062 HTH domain AraC-type, conserved site PF553_17015 IPR009057 Homeobox-like domain superfamily PF553_17015 IPR014710 RmlC-like jelly roll fold PF553_17020 IPR011234 Fumarylacetoacetase-like, C-terminal PF553_17020 IPR036663 Fumarylacetoacetase-like, C-terminal domain superfamily PF553_17070 IPR004476 Ribonuclease II/ribonuclease R PF553_17070 IPR013668 Ribonuclease R winged-helix domain PF553_17070 IPR022966 Ribonuclease II/R, conserved site PF553_17070 IPR022967 RNA-binding domain, S1 PF553_17070 IPR013223 Ribonuclease B, N-terminal OB domain PF553_17070 IPR012340 Nucleic acid-binding, OB-fold PF553_17070 IPR040476 RNase II/RNase R, cold shock domain PF553_17070 IPR011129 Cold shock domain PF553_17070 IPR001900 Ribonuclease II/R PF553_17070 IPR003029 S1 domain PF553_17070 IPR011805 Ribonuclease R PF553_17075 IPR001567 Peptidase M3A/M3B catalytic domain PF553_17075 IPR024077 Neurolysin/Thimet oligopeptidase, domain 2 PF553_17080 IPR012658 Conserved hypothetical protein CHP02443 PF553_17110 IPR005631 Flavinator of succinate dehydrogenase PF553_17110 IPR036714 Flavinator of succinate dehydrogenase superfamily PF553_17115 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily PF553_17115 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal PF553_17115 IPR037069 Acyl-CoA dehydrogenase/oxidase, N-terminal domain superfamily PF553_17115 IPR006091 Acyl-CoA oxidase/dehydrogenase, central domain PF553_17115 IPR006089 Acyl-CoA dehydrogenase, conserved site PF553_17115 IPR036250 Acyl-CoA dehydrogenase-like, C-terminal PF553_17115 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal PF553_17120 IPR036188 FAD/NAD(P)-binding domain superfamily PF553_17120 IPR020946 Flavin monooxygenase-like PF553_17125 IPR000456 Ribosomal protein L17 PF553_17125 IPR036373 Ribosomal protein L17 superfamily PF553_17130 IPR011260 RNA polymerase, alpha subunit, C-terminal PF553_17130 IPR011263 DNA-directed RNA polymerase, RpoA/D/Rpb3-type PF553_17130 IPR011262 DNA-directed RNA polymerase, insert domain PF553_17130 IPR036603 RNA polymerase, RBP11-like subunit PF553_17130 IPR036643 DNA-directed RNA polymerase, insert domain superfamily PF553_17130 IPR011773 DNA-directed RNA polymerase, alpha subunit PF553_17135 IPR002942 RNA-binding S4 domain PF553_17135 IPR022801 Ribosomal protein S4/S9 PF553_17135 IPR005709 Ribosomal protein S4, bacterial-type PF553_17135 IPR001912 Ribosomal protein S4/S9, N-terminal PF553_17135 IPR018079 Ribosomal protein S4, conserved site PF553_17135 IPR036986 RNA-binding S4 domain superfamily PF553_17140 IPR036967 Ribosomal protein S11 superfamily PF553_17140 IPR018102 Ribosomal S11, conserved site PF553_17140 IPR019981 Ribosomal protein S11, bacterial-type PF553_17140 IPR001971 Ribosomal protein S11 PF553_17145 IPR001892 Ribosomal protein S13 PF553_17145 IPR019980 Ribosomal protein S13, bacterial-type PF553_17145 IPR018269 Ribosomal protein S13, conserved site PF553_17145 IPR027437 30s ribosomal protein S13, C-terminal PF553_17145 IPR010979 Ribosomal protein S13-like, H2TH PF553_17150 IPR035977 Ribosomal protein L36 superfamily PF553_17150 IPR000473 Ribosomal protein L36 PF553_17155 IPR023201 SecY domain superfamily PF553_17155 IPR030659 SecY conserved site PF553_17155 IPR026593 Protein translocase subunit SecY PF553_17155 IPR002208 SecY/SEC61-alpha family PF553_17160 IPR030878 Ribosomal protein L15 PF553_17160 IPR005749 Ribosomal protein L15, bacterial-type PF553_17160 IPR001196 Ribosomal protein L15, conserved site PF553_17160 IPR021131 Ribosomal protein L18e/L15P PF553_17160 IPR036227 Ribosomal L18e/L15P superfamily PF553_17165 IPR036919 Ribosomal protein L30, ferredoxin-like fold domain superfamily PF553_17165 IPR016082 Ribosomal protein L30, ferredoxin-like fold domain PF553_17165 IPR005996 Ribosomal protein L30, bacterial-type PF553_17170 IPR005712 Ribosomal protein S5, bacterial-type PF553_17170 IPR000851 Ribosomal protein S5 PF553_17170 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup PF553_17170 IPR013810 Ribosomal protein S5, N-terminal PF553_17170 IPR018192 Ribosomal protein S5, N-terminal, conserved site PF553_17170 IPR005324 Ribosomal protein S5, C-terminal PF553_17170 IPR020568 Ribosomal protein S5 domain 2-type fold PF553_17175 IPR005484 Ribosomal protein L18 PF553_17175 IPR004389 Ribosomal protein L18, bacterial-type PF553_17180 IPR000702 Ribosomal protein L6 PF553_17180 IPR020040 Ribosomal protein L6, alpha-beta domain PF553_17180 IPR036789 Ribosomal protein L6, alpha-beta domain superfamily PF553_17180 IPR019906 Ribosomal protein L6, bacterial-type PF553_17180 IPR002358 Ribosomal protein L6, conserved site PF553_17185 IPR000630 Ribosomal protein S8 PF553_17185 IPR035987 Ribosomal protein S8 superfamily PF553_17190 IPR001209 Ribosomal protein S14 PF553_17190 IPR023036 Ribosomal protein S14, bacterial/plastid PF553_17190 IPR018271 Ribosomal protein S14, conserved site PF553_17195 IPR031310 Ribosomal protein L5, N-terminal PF553_17195 IPR020929 Ribosomal protein L5, conserved site PF553_17195 IPR022803 Ribosomal protein L5 domain superfamily PF553_17195 IPR020930 Ribosomal protein L5, bacterial-type PF553_17195 IPR002132 Ribosomal protein L5 PF553_17195 IPR031309 Ribosomal protein L5, C-terminal PF553_17200 IPR008991 Translation protein SH3-like domain superfamily PF553_17200 IPR005824 KOW PF553_17200 IPR041988 Ribosomal Protein L26/L24, KOW domain PF553_17200 IPR014722 Ribosomal protein L2, domain 2 PF553_17200 IPR003256 Ribosomal protein L24 PF553_17200 IPR005825 Ribosomal protein L24/L26, conserved site PF553_17205 IPR019972 Ribosomal protein L14P, conserved site PF553_17205 IPR036853 Ribosomal protein L14 superfamily PF553_17205 IPR000218 Ribosomal protein L14P PF553_17205 IPR005745 Ribosomal protein L14P, bacterial-type PF553_17210 IPR019979 Ribosomal protein S17, conserved site PF553_17210 IPR019984 30S ribosomal protein S17 PF553_17210 IPR012340 Nucleic acid-binding, OB-fold PF553_17210 IPR000266 Ribosomal protein S17/S11 PF553_17215 IPR036049 Ribosomal protein L29/L35 superfamily PF553_17215 IPR001854 Ribosomal protein L29/L35 PF553_17220 IPR036920 Ribosomal protein L10e/L16 superfamily PF553_17220 IPR016180 Ribosomal protein L10e/L16 PF553_17220 IPR020798 Ribosomal protein L16, conserved site PF553_17220 IPR000114 Ribosomal protein L16 PF553_17230 IPR036394 Ribosomal protein L22/L17 superfamily PF553_17230 IPR001063 Ribosomal protein L22/L17 PF553_17230 IPR018260 Ribosomal protein L22/L17, conserved site PF553_17230 IPR005727 Ribosomal protein L22, bacterial/chloroplast-type PF553_17235 IPR002222 Ribosomal protein S19/S15 PF553_17235 IPR005732 Ribosomal protein S19, bacterial-type PF553_17235 IPR020934 Ribosomal protein S19 conserved site PF553_17235 IPR023575 Ribosomal protein S19, superfamily PF553_17240 IPR008991 Translation protein SH3-like domain superfamily PF553_17240 IPR014726 Ribosomal protein L2, domain 3 PF553_17240 IPR022669 Ribosomal protein L2, C-terminal PF553_17240 IPR005880 Ribosomal protein L2, bacterial/organellar-type PF553_17240 IPR022666 Ribosomal Proteins L2, RNA binding domain PF553_17240 IPR014722 Ribosomal protein L2, domain 2 PF553_17240 IPR012340 Nucleic acid-binding, OB-fold PF553_17240 IPR002171 Ribosomal protein L2 PF553_17245 IPR012678 Ribosomal protein L23/L15e core domain superfamily PF553_17245 IPR013025 Ribosomal protein L25/L23 PF553_17245 IPR012677 Nucleotide-binding alpha-beta plait domain superfamily PF553_17250 IPR002136 Ribosomal protein L4/L1e PF553_17250 IPR023574 Ribosomal protein L4 domain superfamily PF553_17250 IPR013005 50S ribosomal protein uL4 PF553_17255 IPR000597 Ribosomal protein L3 PF553_17255 IPR019927 Ribosomal protein L3, bacterial/organelle-type PF553_17255 IPR019926 Ribosomal protein L3, conserved site PF553_17255 IPR009000 Translation protein, beta-barrel domain superfamily PF553_17260 IPR001848 Ribosomal protein S10 PF553_17260 IPR018268 Ribosomal protein S10, conserved site PF553_17260 IPR027486 Ribosomal protein S10 domain PF553_17260 IPR036838 Ribosomal protein S10 domain superfamily PF553_17265 IPR029062 Class I glutamine amidotransferase-like PF553_17265 IPR017926 Glutamine amidotransferase PF553_17270 IPR015421 Pyridoxal phosphate-dependent transferase, major domain PF553_17270 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 PF553_17270 IPR000277 Cys/Met metabolism, pyridoxal phosphate-dependent enzyme PF553_17270 IPR006233 Cystathionine beta-lyase, bacterial PF553_17270 IPR015424 Pyridoxal phosphate-dependent transferase PF553_17275 IPR033186 Helicase HerA-like C-terminal PF553_17275 IPR027417 P-loop containing nucleoside triphosphate hydrolase PF553_17285 IPR023950 Flavohemoprotein PF553_17285 IPR017938 Riboflavin synthase-like beta-barrel PF553_17285 IPR001433 Oxidoreductase FAD/NAD(P)-binding PF553_17285 IPR012292 Globin/Protoglobin PF553_17285 IPR039261 Ferredoxin-NADP reductase (FNR), nucleotide-binding domain PF553_17285 IPR000971 Globin PF553_17285 IPR008333 Flavoprotein pyridine nucleotide cytochrome reductase-like, FAD-binding domain PF553_17285 IPR017927 FAD-binding domain, ferredoxin reductase-type PF553_17285 IPR009050 Globin-like superfamily PF553_17290 IPR030489 Transcription regulator Rrf2-type, conserved site PF553_17290 IPR000944 Transcription regulator Rrf2-type PF553_17290 IPR023761 Transcriptional repressor HTH, NsrR PF553_17290 IPR036388 Winged helix-like DNA-binding domain superfamily PF553_17290 IPR036390 Winged helix DNA-binding domain superfamily PF553_17295 IPR027417 P-loop containing nucleoside triphosphate hydrolase PF553_17295 IPR030393 EngB-type guanine nucleotide-binding (G) domain PF553_17295 IPR019987 GTP-binding protein, ribosome biogenesis, YsxC PF553_17295 IPR006073 GTP binding domain PF553_17305 IPR034703 Proton/glutamate-aspartate symporter GltP PF553_17305 IPR033380 Glutamate-aspartate symport protein GltP/GltT PF553_17305 IPR018107 Sodium:dicarboxylate symporter, conserved site PF553_17305 IPR036458 Sodium:dicarboxylate symporter superfamily PF553_17305 IPR001991 Sodium:dicarboxylate symporter PF553_17310 IPR003703 Acyl-CoA thioesterase PF553_17310 IPR029069 HotDog domain superfamily PF553_17315 IPR041728 GPAT/DHAPAT, acyltransferase domain PF553_17315 IPR022284 Glycerol-3-phosphate O-acyltransferase/Dihydroxyacetone phosphate acyltransferase PF553_17315 IPR028354 Glycerol-3-phosphate acyltransferase, PlsB PF553_17315 IPR002123 Phospholipid/glycerol acyltransferase PF553_17320 IPR038404 TRAP transporter solute receptor DctP superfamily PF553_17330 IPR014001 Helicase superfamily 1/2, ATP-binding domain PF553_17330 IPR001650 Helicase, C-terminal PF553_17330 IPR033454 RecG, wedge domain PF553_17330 IPR011545 DEAD/DEAH box helicase domain PF553_17330 IPR027417 P-loop containing nucleoside triphosphate hydrolase PF553_17330 IPR004609 ATP-dependent DNA helicase RecG PF553_17330 IPR012340 Nucleic acid-binding, OB-fold PF553_17335 IPR000836 Phosphoribosyltransferase domain PF553_17335 IPR005222 Competence protein ComF PF553_17335 IPR029057 Phosphoribosyltransferase-like PF553_17340 IPR020476 NUDIX hydrolase PF553_17340 IPR015797 NUDIX hydrolase-like domain superfamily PF553_17340 IPR020084 NUDIX hydrolase, conserved site PF553_17340 IPR000086 NUDIX hydrolase domain PF553_17345 IPR005269 Cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG PF553_17345 IPR031100 LOG family PF553_17350 IPR004488 Magnesium/cobalt transport protein CorA PF553_17350 IPR002523 Mg2+ transporter protein, CorA-like/Zinc transport protein ZntB PF553_17360 IPR008869 Toluene tolerance Ttg2/phospholipid-binding protein MlaC PF553_17360 IPR042245 Tgt2/MlaC superfamily PF553_17370 IPR003453 ABC transport permease subunit MlaE, Proteobacteria PF553_17370 IPR030802 ABC transporter permease MalE PF553_17375 IPR003593 AAA+ ATPase domain PF553_17375 IPR003439 ABC transporter-like PF553_17375 IPR017871 ABC transporter, conserved site PF553_17375 IPR030296 Probable ABC transporter ATP-binding protein MlaF/Mkl PF553_17375 IPR027417 P-loop containing nucleoside triphosphate hydrolase PF553_17385 IPR014014 RNA helicase, DEAD-box type, Q motif PF553_17385 IPR000629 ATP-dependent RNA helicase DEAD-box, conserved site PF553_17385 IPR027417 P-loop containing nucleoside triphosphate hydrolase PF553_17385 IPR001650 Helicase, C-terminal PF553_17385 IPR012677 Nucleotide-binding alpha-beta plait domain superfamily PF553_17385 IPR028618 ATP-dependent RNA helicase DeaD PF553_17385 IPR011545 DEAD/DEAH box helicase domain PF553_17385 IPR005580 DEAD box helicase DbpA/CsdA, RNA-binding domain PF553_17385 IPR034415 CsdA, RNA recognition motif PF553_17385 IPR021046 Cold-shock protein, DEAD box A, C-terminal PF553_17385 IPR014001 Helicase superfamily 1/2, ATP-binding domain PF553_17390 IPR033942 Inositol monophosphatase PF553_17390 IPR020583 Inositol monophosphatase, metal-binding site PF553_17390 IPR000760 Inositol monophosphatase-like PF553_17390 IPR020550 Inositol monophosphatase, conserved site PF553_17390 IPR022337 Inositol monophosphatase, SuhB PF553_17395 IPR005477 Deoxyxylulose-5-phosphate synthase PF553_17395 IPR029061 Thiamin diphosphate-binding fold PF553_17395 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II PF553_17395 IPR020826 Transketolase binding site PF553_17395 IPR033248 Transketolase, C-terminal domain PF553_17395 IPR005475 Transketolase-like, pyrimidine-binding domain PF553_17400 IPR000926 GTP cyclohydrolase II, RibA PF553_17400 IPR036144 RibA-like superfamily PF553_17400 IPR032677 GTP cyclohydrolase II PF553_17405 IPR001260 Coproporphyrinogen III oxidase, aerobic PF553_17405 IPR036406 Oxygen-dependent coproporphyrinogen III oxidase superfamily PF553_17405 IPR018375 Coproporphyrinogen III oxidase, conserved site PF553_17410 IPR006151 Quinate/shikimate 5-dehydrogenase/glutamyl-tRNA reductase PF553_17410 IPR022893 Shikimate dehydrogenase family PF553_17410 IPR013708 Shikimate dehydrogenase substrate binding, N-terminal PF553_17410 IPR011342 Shikimate dehydrogenase PF553_17410 IPR041121 SDH, C-terminal PF553_17410 IPR036291 NAD(P)-binding domain superfamily PF553_17420 IPR025878 Acetyl-CoA dehydrogenase-like C-terminal domain PF553_17420 IPR006091 Acyl-CoA oxidase/dehydrogenase, central domain PF553_17420 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal PF553_17420 IPR037069 Acyl-CoA dehydrogenase/oxidase, N-terminal domain superfamily PF553_17420 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily PF553_17420 IPR036250 Acyl-CoA dehydrogenase-like, C-terminal PF553_17420 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal PF553_17430 IPR007168 Phage shock protein, PspC, N-terminal PF553_17435 IPR000644 CBS domain PF553_17450 IPR020846 Major facilitator superfamily domain PF553_17450 IPR036259 MFS transporter superfamily PF553_17450 IPR004734 Multidrug resistance protein PF553_17450 IPR005829 Sugar transporter, conserved site PF553_17450 IPR001958 Tetracycline resistance protein TetA/multidrug resistance protein MdtG PF553_17450 IPR011701 Major facilitator superfamily PF553_17455 IPR002310 Glycine-tRNA ligase, alpha subunit PF553_17455 IPR006194 Glycine-tRNA synthetase, heterodimeric PF553_17460 IPR006194 Glycine-tRNA synthetase, heterodimeric PF553_17460 IPR015944 Glycine-tRNA ligase, beta subunit PF553_17460 IPR008909 DALR anticodon binding PF553_17470 IPR025668 Transposase DDE domain PF553_17490 IPR000620 EamA domain PF553_17495 IPR005119 LysR, substrate-binding PF553_17495 IPR000847 Transcription regulator HTH, LysR PF553_17495 IPR036388 Winged helix-like DNA-binding domain superfamily PF553_17495 IPR036390 Winged helix DNA-binding domain superfamily PF553_17510 IPR034202 Subtilisin Carlsberg-like catalytic domain PF553_17510 IPR010259 Peptidase S8 propeptide/proteinase inhibitor I9 PF553_17510 IPR015500 Peptidase S8, subtilisin-related PF553_17510 IPR023828 Peptidase S8, subtilisin, Ser-active site PF553_17510 IPR037045 Peptidase S8 propeptide/proteinase inhibitor I9 superfamily PF553_17510 IPR022398 Peptidase S8, subtilisin, His-active site PF553_17510 IPR036852 Peptidase S8/S53 domain superfamily PF553_17510 IPR000209 Peptidase S8/S53 domain PF553_17510 IPR023827 Peptidase S8, subtilisin, Asp-active site PF553_17525 IPR016681 Succinylglutamate desuccinylase PF553_17525 IPR007036 Succinylglutamate desuccinylase/aspartoacylase PF553_17530 IPR037031 Succinylarginine dihydrolase superfamily PF553_17530 IPR007079 Succinylarginine dihydrolase PF553_17535 IPR016161 Aldehyde/histidinol dehydrogenase PF553_17535 IPR016163 Aldehyde dehydrogenase, C-terminal PF553_17535 IPR016160 Aldehyde dehydrogenase, cysteine active site PF553_17535 IPR029510 Aldehyde dehydrogenase, glutamic acid active site PF553_17535 IPR016162 Aldehyde dehydrogenase, N-terminal PF553_17535 IPR015590 Aldehyde dehydrogenase domain PF553_17535 IPR017649 Succinylglutamate-semialdehyde dehydrogenase PF553_17540 IPR007041 Arginine N-succinyltransferase AstA/AruG PF553_17540 IPR017650 Arginine N-succinyltransferase PF553_17540 IPR016181 Acyl-CoA N-acyltransferase PF553_17545 IPR015421 Pyridoxal phosphate-dependent transferase, major domain PF553_17545 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 PF553_17545 IPR026330 Succinylornithine transaminase PF553_17545 IPR005814 Aminotransferase class-III PF553_17545 IPR004636 Acetylornithine/Succinylornithine transaminase family PF553_17545 IPR015424 Pyridoxal phosphate-dependent transferase PF553_17545 IPR017652 Acetyl/Succinylornithine transaminase family, bacteria PF553_17550 IPR033922 NAD(P) binding domain of glutamate dehydrogenase PF553_17550 IPR036291 NAD(P)-binding domain superfamily PF553_17550 IPR033524 Leu/Phe/Val dehydrogenases active site PF553_17550 IPR006097 Glutamate/phenylalanine/leucine/valine dehydrogenase, dimerisation domain PF553_17550 IPR006096 Glutamate/phenylalanine/leucine/valine dehydrogenase, C-terminal PF553_17550 IPR006095 Glutamate/phenylalanine/leucine/valine dehydrogenase PF553_17550 IPR014362 Glutamate dehydrogenase PF553_17555 IPR004841 Amino acid permease/ SLC12A domain PF553_17555 IPR004840 Amino acid permease, conserved site PF553_17565 IPR013216 Methyltransferase type 11 PF553_17565 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase PF553_17585 IPR025669 AAA domain PF553_17585 IPR027417 P-loop containing nucleoside triphosphate hydrolase PF553_17590 IPR002549 Transmembrane protein TqsA-like PF553_17595 IPR036423 Superoxide dismutase-like, copper/zinc binding domain superfamily PF553_17595 IPR024134 Superoxide dismutase (Cu/Zn) / superoxide dismutase copper chaperone PF553_17595 IPR018152 Superoxide dismutase, copper/zinc, binding site PF553_17595 IPR001424 Superoxide dismutase, copper/zinc binding domain PF553_17600 IPR032692 Integral membrane protein YccS, N-terminal PF553_17600 IPR010020 Integral membrane protein, YccS/YhfK PF553_17600 IPR010019 Integral membrane protein, YccS PF553_17605 IPR005829 Sugar transporter, conserved site PF553_17605 IPR011701 Major facilitator superfamily PF553_17605 IPR020846 Major facilitator superfamily domain PF553_17605 IPR036259 MFS transporter superfamily PF553_17615 IPR003680 Flavodoxin-like fold PF553_17615 IPR029039 Flavoprotein-like superfamily PF553_17620 IPR007138 Antibiotic biosynthesis monooxygenase domain PF553_17620 IPR011008 Dimeric alpha-beta barrel PF553_17635 IPR016171 Vanillyl-alcohol oxidase, C-terminal subdomain 2 PF553_17635 IPR006094 FAD linked oxidase, N-terminal PF553_17635 IPR004490 Glycolate oxidase subunit GlcD PF553_17635 IPR004113 FAD-linked oxidase, C-terminal PF553_17635 IPR036318 FAD-binding, type PCMH-like superfamily PF553_17635 IPR016166 FAD-binding domain, PCMH-type PF553_17635 IPR016164 FAD-linked oxidase-like, C-terminal PF553_17640 IPR002912 ACT domain PF553_17640 IPR006139 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain PF553_17640 IPR029753 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain conserved site PF553_17640 IPR029752 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain conserved site 1 PF553_17640 IPR006140 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain PF553_17640 IPR036291 NAD(P)-binding domain superfamily PF553_17645 IPR000620 EamA domain PF553_17650 IPR000620 EamA domain PF553_17660 IPR002781 Transmembrane protein TauE-like PF553_17665 IPR002501 Pseudouridine synthase II, N-terminal PF553_17665 IPR020103 Pseudouridine synthase, catalytic domain superfamily PF553_17665 IPR015947 PUA-like superfamily PF553_17665 IPR014780 tRNA pseudouridine synthase II, TruB PF553_17665 IPR015240 tRNA pseudouridine synthase II, TruB, subfamily 1, C-terminal PF553_17665 IPR032819 tRNA pseudouridylate synthase B, C-terminal PF553_17670 IPR004961 Lipase chaperone PF553_17675 IPR029058 Alpha/Beta hydrolase fold PF553_17675 IPR000073 Alpha/beta hydrolase fold-1 PF553_17680 IPR038657 Ribosomal protein L19 superfamily PF553_17680 IPR001857 Ribosomal protein L19 PF553_17680 IPR008991 Translation protein SH3-like domain superfamily PF553_17680 IPR018257 Ribosomal protein L19, conserved site PF553_17685 IPR029028 Alpha/beta knot methyltransferases PF553_17685 IPR002649 tRNA (guanine-N1-)-methyltransferase, bacteria PF553_17685 IPR023148 tRNA (guanine-N1-)-methyltransferase, C-terminal PF553_17685 IPR029026 tRNA (guanine-N1-)-methyltransferase, N-terminal PF553_17685 IPR016009 tRNA methyltransferase TRMD/TRM10-type domain PF553_17690 IPR011961 16S rRNA processing protein RimM PF553_17690 IPR027275 PRC-barrel domain PF553_17690 IPR009000 Translation protein, beta-barrel domain superfamily PF553_17690 IPR011033 PRC-barrel-like superfamily PF553_17690 IPR002676 RimM, N-terminal PF553_17690 IPR036976 RimM, N-terminal domain superfamily PF553_17695 IPR023803 Ribosomal protein S16 domain superfamily PF553_17695 IPR000307 Ribosomal protein S16 PF553_17695 IPR020592 Ribosomal protein S16, conserved site PF553_17735 IPR003451 4-hydroxy-3-methylbut-2-enyl diphosphate reductase PF553_17740 IPR017665 Guanylate kinase PF553_17740 IPR008144 Guanylate kinase-like domain PF553_17740 IPR020590 Guanylate kinase, conserved site PF553_17740 IPR008145 Guanylate kinase/L-type calcium channel beta subunit PF553_17740 IPR027417 P-loop containing nucleoside triphosphate hydrolase PF553_17745 IPR003716 DNA-directed RNA polymerase, omega subunit PF553_17745 IPR006110 RNA polymerase, subunit omega/K/RPB6 PF553_17745 IPR012293 RNA polymerase subunit, RPB6/omega PF553_17745 IPR036161 RPB6/omega subunit-like superfamily PF553_17755 IPR012675 Beta-grasp domain superfamily PF553_17755 IPR003607 HD/PDEase domain PF553_17755 IPR004811 RelA/SpoT family PF553_17755 IPR007685 RelA/SpoT PF553_17755 IPR004095 TGS PF553_17755 IPR012676 TGS-like PF553_17755 IPR033655 RelA, TGS domain PF553_17755 IPR002912 ACT domain PF553_17760 IPR006056 RidA family PF553_17760 IPR035959 RutC-like superfamily PF553_17760 IPR006175 YjgF/YER057c/UK114 family PF553_17760 IPR019897 RidA, conserved site PF553_17765 IPR007419 BFD-like [2Fe-2S]-binding domain PF553_17765 IPR041854 BFD-like [2Fe-2S]-binding domain superfamily PF553_17770 IPR002024 Bacterioferritin PF553_17770 IPR012347 Ferritin-like PF553_17770 IPR009040 Ferritin-like diiron domain PF553_17770 IPR009078 Ferritin-like superfamily PF553_17770 IPR008331 Ferritin/DPS protein domain PF553_17775 IPR007016 O-antigen ligase-related PF553_17775 IPR031726 Protein glycosylation ligase domain PF553_17775 IPR021797 Virulence factor membrane-bound polymerase, C-terminal PF553_17785 IPR000983 Bacterial general secretion pathway protein G-type pilin PF553_17785 IPR012902 Prokaryotic N-terminal methylation site PF553_17785 IPR001082 Fimbrial protein pilin PF553_17795 IPR007621 TPM domain PF553_17800 IPR023353 LemA-like domain superfamily PF553_17800 IPR007156 LemA PF553_17810 IPR028261 Dihydroprymidine dehydrogenase domain II PF553_17810 IPR009051 Alpha-helical ferredoxin PF553_17810 IPR006006 Glutamate synthase, NADH/NADPH, small subunit 2 PF553_17810 IPR023753 FAD/NAD(P)-binding domain PF553_17810 IPR036188 FAD/NAD(P)-binding domain superfamily PF553_17815 IPR013785 Aldolase-type TIM barrel PF553_17815 IPR017932 Glutamine amidotransferase type 2 domain PF553_17815 IPR002489 Glutamate synthase, alpha subunit, C-terminal PF553_17815 IPR036485 Glutamate synthase, alpha subunit, C-terminal domain superfamily PF553_17815 IPR006982 Glutamate synthase, central-N PF553_17815 IPR002932 Glutamate synthase domain PF553_17815 IPR029055 Nucleophile aminohydrolases, N-terminal PF553_17825 IPR030960 3-dehydroquinate synthase domain PF553_17825 IPR030963 3-dehydroquinate synthase family PF553_17825 IPR016037 3-dehydroquinate synthase AroB PF553_17830 IPR031322 Shikimate kinase/gluconokinase PF553_17830 IPR000623 Shikimate kinase/Threonine synthase-like 1 PF553_17830 IPR023000 Shikimate kinase, conserved site PF553_17830 IPR027417 P-loop containing nucleoside triphosphate hydrolase PF553_17835 IPR004846 Type II/III secretion system PF553_17835 IPR021731 AMIN domain PF553_17835 IPR001775 GspD/PilQ family PF553_17835 IPR005644 NolW-like PF553_17835 IPR038591 NolW-like superfamily PF553_17835 IPR013355 Type IV pilus secretin PilQ PF553_17835 IPR011662 Secretin/TonB, short N-terminal domain PF553_17835 IPR004845 Type II secretion system GspD, conserved site PF553_17845 IPR007445 Pilus assembly protein, PilO PF553_17845 IPR014717 Translation elongation factor EF1B/ribosomal protein S6 PF553_17850 IPR007813 Fimbrial assembly PilN PF553_17855 IPR005883 Type IV pilus assembly protein PilM PF553_17855 IPR003494 SHS2 domain inserted in FtsA PF553_17860 IPR012338 Beta-lactamase/transpeptidase-like PF553_17860 IPR001460 Penicillin-binding protein, transpeptidase PF553_17860 IPR031376 Penicillin-binding protein, OB-like domain PF553_17860 IPR036950 Penicillin binding protein transglycosylase domain PF553_17860 IPR001264 Glycosyl transferase, family 51 PF553_17860 IPR023346 Lysozyme-like domain superfamily PF553_17865 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase PF553_17865 IPR016718 rRNA (guanine-N1-)-methyltransferase A, predicted PF553_17865 IPR025714 Methyltransferase domain PF553_17875 IPR018480 Phospho-N-acetylmuramoyl-pentapeptide transferase, conserved site PF553_17875 IPR003524 Phospho-N-acetylmuramoyl-pentapeptide transferase PF553_17875 IPR000715 Glycosyl transferase, family 4 PF553_17880 IPR036615 Mur ligase, C-terminal domain superfamily PF553_17880 IPR004101 Mur ligase, C-terminal PF553_17880 IPR036565 Mur-like, catalytic domain superfamily PF553_17880 IPR013221 Mur ligase, central PF553_17880 IPR000713 Mur ligase, N-terminal catalytic domain PF553_17880 IPR035911 MurE/MurF, N-terminal PF553_17880 IPR005863 UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase PF553_17885 IPR000713 Mur ligase, N-terminal catalytic domain PF553_17885 IPR035911 MurE/MurF, N-terminal PF553_17885 IPR036615 Mur ligase, C-terminal domain superfamily PF553_17885 IPR036565 Mur-like, catalytic domain superfamily PF553_17885 IPR013221 Mur ligase, central PF553_17885 IPR005761 UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase PF553_17885 IPR004101 Mur ligase, C-terminal PF553_17890 IPR037532 Peptidoglycan D,D-transpeptidase FtsI PF553_17890 IPR012338 Beta-lactamase/transpeptidase-like PF553_17890 IPR005311 Penicillin-binding protein, dimerisation domain PF553_17890 IPR036138 Penicillin-binding protein, dimerisation domain superfamily PF553_17890 IPR001460 Penicillin-binding protein, transpeptidase PF553_17900 IPR002903 Ribosomal RNA small subunit methyltransferase H PF553_17900 IPR023397 S-adenosyl-L-methionine-dependent methyltransferase, MraW, recognition domain superfamily PF553_17900 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase PF553_17905 IPR005669 Thiosulphate/Sulfate-binding protein PF553_17905 IPR034408 Sulphate/thiosulphate-binding site PF553_17905 IPR000957 Sulphate/thiosulphate-binding, conserved site PF553_17915 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold PF553_17915 IPR033910 Glutamyl-tRNA synthetase PF553_17915 IPR020751 Aminoacyl-tRNA synthetase, class I, anticodon-binding domain, subdomain 2 PF553_17915 IPR020058 Glutamyl/glutaminyl-tRNA synthetase, class Ib, catalytic domain PF553_17915 IPR004527 Glutamate-tRNA ligase, bacterial/mitochondrial PF553_17915 IPR000924 Glutamyl/glutaminyl-tRNA synthetase PF553_17915 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site PF553_17915 IPR008925 Aminoacyl-tRNA synthetase, class I, anticodon-binding PF553_17930 IPR004841 Amino acid permease/ SLC12A domain PF553_17930 IPR004840 Amino acid permease, conserved site PF553_17960 IPR002524 Cation efflux protein PF553_17960 IPR036837 Cation efflux protein, cytoplasmic domain superfamily PF553_17960 IPR027469 Cation efflux transmembrane domain superfamily PF553_17965 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains PF553_17965 IPR001036 Acriflavin resistance protein PF553_17965 IPR004763 Cation efflux system CzcA/CusA/SilA/NccA/HelA/CnrA PF553_17970 IPR006143 RND efflux pump, membrane fusion protein PF553_17970 IPR005695 Cobalt/zinc/cadmium resistance protein CzcB PF553_17970 IPR032317 RND efflux pump, membrane fusion protein, barrel-sandwich domain PF553_17995 IPR032781 ABC-transporter extension domain PF553_17995 IPR003439 ABC transporter-like PF553_17995 IPR017871 ABC transporter, conserved site PF553_17995 IPR022374 Energy-dependent translational throttle protein EttA PF553_17995 IPR027417 P-loop containing nucleoside triphosphate hydrolase PF553_17995 IPR003593 AAA+ ATPase domain PF553_18000 IPR006235 O-acetylhomoserine/O-acetylserine sulfhydrylase PF553_18000 IPR000277 Cys/Met metabolism, pyridoxal phosphate-dependent enzyme PF553_18000 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 PF553_18000 IPR015421 Pyridoxal phosphate-dependent transferase, major domain PF553_18000 IPR015424 Pyridoxal phosphate-dependent transferase PF553_18005 IPR020904 Short-chain dehydrogenase/reductase, conserved site PF553_18005 IPR002347 Short-chain dehydrogenase/reductase SDR PF553_18005 IPR036291 NAD(P)-binding domain superfamily PF553_18010 IPR011547 SLC26A/SulP transporter domain PF553_18010 IPR001902 SLC26A/SulP transporter PF553_18010 IPR002645 STAS domain PF553_18010 IPR036513 STAS domain superfamily PF553_18015 IPR041692 HHH domain 9 PF553_18015 IPR012340 Nucleic acid-binding, OB-fold PF553_18015 IPR012337 Ribonuclease H-like superfamily PF553_18015 IPR010994 RuvA domain 2-like PF553_18015 IPR022967 RNA-binding domain, S1 PF553_18015 IPR023323 Tex-like domain superfamily PF553_18015 IPR003029 S1 domain PF553_18015 IPR018974 Tex-like protein, N-terminal PF553_18015 IPR032639 Tex protein, YqgF-like domain PF553_18015 IPR023319 Tex-like protein, HTH domain superfamily PF553_18015 IPR006641 YqgF/RNase H-like domain PF553_18015 IPR037027 YqgF/RNase H-like domain superfamily PF553_18020 IPR011006 CheY-like superfamily PF553_18020 IPR001867 OmpR/PhoB-type DNA-binding domain PF553_18020 IPR016032 Signal transduction response regulator, C-terminal effector PF553_18020 IPR001789 Signal transduction response regulator, receiver domain PF553_18020 IPR039420 Transcriptional regulatory protein WalR-like PF553_18020 IPR036388 Winged helix-like DNA-binding domain superfamily PF553_18025 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily PF553_18025 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain PF553_18025 IPR005467 Histidine kinase domain PF553_18025 IPR004358 Signal transduction histidine kinase-related protein, C-terminal PF553_18025 IPR003594 Histidine kinase/HSP90-like ATPase PF553_18025 IPR003660 HAMP domain PF553_18025 IPR036890 Histidine kinase/HSP90-like ATPase superfamily PF553_18035 IPR026888 Acetyl-CoA hydrolase/transferase C-terminal domain PF553_18035 IPR038460 Acetyl-CoA hydrolase/transferase, C-terminal domain superfamily PF553_18035 IPR003702 Acetyl-CoA hydrolase/transferase PF553_18035 IPR037171 NagB/RpiA transferase-like PF553_18035 IPR017821 Succinate CoA transferase PF553_18040 IPR000182 GNAT domain PF553_18040 IPR016181 Acyl-CoA N-acyltransferase PF553_18040 IPR017255 Acetyltransferase, GNAT, predicted PF553_18040 IPR023072 Acetyltransferase, YpeA PF553_18060 IPR038494 Imidazole glycerol phosphate dehydratase domain superfamily PF553_18060 IPR000807 Imidazoleglycerol-phosphate dehydratase PF553_18060 IPR020565 Imidazoleglycerol-phosphate dehydratase, conserved site PF553_18060 IPR020568 Ribosomal protein S5 domain 2-type fold PF553_18065 IPR010139 Imidazole glycerol phosphate synthase, subunit H PF553_18065 IPR029062 Class I glutamine amidotransferase-like PF553_18065 IPR017926 Glutamine amidotransferase PF553_18080 IPR023016 Phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase PF553_18080 IPR006063 Phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase HisA PF553_18080 IPR011060 Ribulose-phosphate binding barrel PF553_18080 IPR013785 Aldolase-type TIM barrel PF553_18080 IPR006062 Histidine biosynthesis PF553_18115 IPR002575 Aminoglycoside phosphotransferase PF553_18115 IPR005280 Homoserine kinase, type II PF553_18115 IPR011009 Protein kinase-like domain superfamily PF553_18120 IPR004651 Histidine biosynthesis, HisF PF553_18120 IPR006062 Histidine biosynthesis PF553_18120 IPR011060 Ribulose-phosphate binding barrel PF553_18120 IPR013785 Aldolase-type TIM barrel PF553_18135 IPR023271 Aquaporin-like PF553_18135 IPR034294 Aquaporin transporter PF553_18135 IPR023743 Aquaporin Z PF553_18135 IPR000425 Major intrinsic protein PF553_18135 IPR022357 Major intrinsic protein, conserved site PF553_18160 IPR003855 Potassium transporter PF553_18160 IPR023051 Potassium uptake protein, low affinity, Kup PF553_18175 IPR029039 Flavoprotein-like superfamily PF553_18175 IPR003680 Flavodoxin-like fold PF553_18180 IPR036388 Winged helix-like DNA-binding domain superfamily PF553_18180 IPR036390 Winged helix DNA-binding domain superfamily PF553_18180 IPR011991 ArsR-like helix-turn-helix domain PF553_18180 IPR002577 Helix-turn-helix, HxlR type PF553_18205 IPR020449 Transcription regulator HTH, AraC- type PF553_18205 IPR023699 Transcription activator HTH, RhaR PF553_18205 IPR014710 RmlC-like jelly roll fold PF553_18205 IPR003313 AraC-type arabinose-binding/dimerisation domain PF553_18205 IPR018060 DNA binding HTH domain, AraC-type PF553_18205 IPR037923 Transcription regulator HTH-like PF553_18205 IPR009057 Homeobox-like domain superfamily PF553_18205 IPR018062 HTH domain AraC-type, conserved site PF553_18210 IPR018170 Aldo/keto reductase, conserved site PF553_18210 IPR020471 Aldo/keto reductase PF553_18210 IPR036812 NADP-dependent oxidoreductase domain superfamily PF553_18210 IPR023210 NADP-dependent oxidoreductase domain PF553_18230 IPR005119 LysR, substrate-binding PF553_18230 IPR000847 Transcription regulator HTH, LysR PF553_18230 IPR036388 Winged helix-like DNA-binding domain superfamily PF553_18230 IPR036390 Winged helix DNA-binding domain superfamily PF553_18235 IPR011701 Major facilitator superfamily PF553_18235 IPR020846 Major facilitator superfamily domain PF553_18235 IPR036259 MFS transporter superfamily PF553_18235 IPR005829 Sugar transporter, conserved site PF553_18255 IPR014105 Carotenoid/retinoid oxidoreductase PF553_18255 IPR036188 FAD/NAD(P)-binding domain superfamily PF553_18255 IPR002937 Amine oxidase PF553_18260 IPR003829 Pirin, N-terminal domain PF553_18260 IPR014710 RmlC-like jelly roll fold PF553_18260 IPR011051 RmlC-like cupin domain superfamily PF553_18260 IPR008778 Pirin, C-terminal domain PF553_18260 IPR012093 Pirin PF553_18265 IPR000868 Isochorismatase-like PF553_18265 IPR036380 Isochorismatase-like superfamily PF553_18270 IPR000847 Transcription regulator HTH, LysR PF553_18270 IPR036390 Winged helix DNA-binding domain superfamily PF553_18270 IPR036388 Winged helix-like DNA-binding domain superfamily PF553_18275 IPR010102 Succinate semialdehyde dehydrogenase PF553_18275 IPR016163 Aldehyde dehydrogenase, C-terminal PF553_18275 IPR016160 Aldehyde dehydrogenase, cysteine active site PF553_18275 IPR029510 Aldehyde dehydrogenase, glutamic acid active site PF553_18275 IPR016161 Aldehyde/histidinol dehydrogenase PF553_18275 IPR016162 Aldehyde dehydrogenase, N-terminal PF553_18275 IPR015590 Aldehyde dehydrogenase domain PF553_18280 IPR004632 4-aminobutyrate aminotransferase, bacterial PF553_18280 IPR005814 Aminotransferase class-III PF553_18280 IPR015421 Pyridoxal phosphate-dependent transferase, major domain PF553_18280 IPR015424 Pyridoxal phosphate-dependent transferase PF553_18280 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 PF553_18285 IPR036388 Winged helix-like DNA-binding domain superfamily PF553_18285 IPR000524 Transcription regulator HTH, GntR PF553_18285 IPR015421 Pyridoxal phosphate-dependent transferase, major domain PF553_18285 IPR036390 Winged helix DNA-binding domain superfamily PF553_18285 IPR015424 Pyridoxal phosphate-dependent transferase PF553_18285 IPR004839 Aminotransferase, class I/classII PF553_18290 IPR004840 Amino acid permease, conserved site PF553_18290 IPR011265 GABA permease PF553_18290 IPR004841 Amino acid permease/ SLC12A domain PF553_18300 IPR004471 Branched-chain amino acid transport, AzlC PF553_18300 IPR011606 Branched-chain amino acid transport, permease PF553_18310 IPR011344 Single-stranded DNA-binding protein PF553_18310 IPR000424 Primosome PriB/single-strand DNA-binding PF553_18310 IPR012340 Nucleic acid-binding, OB-fold PF553_18315 IPR020846 Major facilitator superfamily domain PF553_18315 IPR036259 MFS transporter superfamily PF553_18315 IPR011701 Major facilitator superfamily PF553_18325 IPR034291 Thiamine phosphate synthase PF553_18325 IPR016084 Haem oxygenase-like, multi-helical PF553_18325 IPR004399 Hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase PF553_18325 IPR013749 Pyridoxamine kinase/Phosphomethylpyrimidine kinase PF553_18325 IPR029056 Ribokinase-like PF553_18325 IPR004305 Thiaminase-2/PQQC PF553_18325 IPR036206 Thiamin phosphate synthase superfamily PF553_18325 IPR022998 Thiamine phosphate synthase/TenI PF553_18325 IPR013785 Aldolase-type TIM barrel PF553_18330 IPR009707 Membrane protein GlpM/YdgC PF553_18340 IPR020843 Polyketide synthase, enoylreductase domain PF553_18340 IPR036291 NAD(P)-binding domain superfamily PF553_18340 IPR011032 GroES-like superfamily PF553_18340 IPR002364 Quinone oxidoreductase/zeta-crystallin, conserved site PF553_18340 IPR013149 Alcohol dehydrogenase, C-terminal PF553_18340 IPR013154 Alcohol dehydrogenase, N-terminal PF553_18345 IPR001647 DNA-binding HTH domain, TetR-type PF553_18345 IPR036271 Tetracyclin repressor-like, C-terminal domain superfamily PF553_18345 IPR011075 Tetracyclin repressor-like, C-terminal domain PF553_18345 IPR009057 Homeobox-like domain superfamily PF553_18350 IPR041102 UvrA, interaction domain PF553_18350 IPR041552 UvrA DNA-binding domain PF553_18350 IPR004602 UvrABC system subunit A PF553_18350 IPR027417 P-loop containing nucleoside triphosphate hydrolase PF553_18350 IPR017871 ABC transporter, conserved site PF553_18350 IPR003439 ABC transporter-like PF553_18355 IPR029787 Nucleotide cyclase PF553_18355 IPR000160 GGDEF domain PF553_18365 IPR000060 BCCT transporter family PF553_18365 IPR018093 BCCT transporter, conserved site PF553_18375 IPR038377 Sodium/glucose symporter superfamily PF553_18375 IPR001734 Sodium/solute symporter PF553_18375 IPR018212 Sodium/solute symporter, conserved site PF553_18375 IPR014083 Cation/acetate symporter ActP PF553_18380 IPR007436 Protein of unknown function DUF485 PF553_18385 IPR003594 Histidine kinase/HSP90-like ATPase PF553_18385 IPR003660 HAMP domain PF553_18385 IPR038188 TorS, sensor domain superfamily PF553_18385 IPR001789 Signal transduction response regulator, receiver domain PF553_18385 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain PF553_18385 IPR004358 Signal transduction histidine kinase-related protein, C-terminal PF553_18385 IPR036641 HPT domain superfamily PF553_18385 IPR011006 CheY-like superfamily PF553_18385 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily PF553_18385 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain PF553_18385 IPR005467 Histidine kinase domain PF553_18385 IPR037952 Sensor histidine kinase TorS, sensor domain PF553_18385 IPR036890 Histidine kinase/HSP90-like ATPase superfamily PF553_18395 IPR000792 Transcription regulator LuxR, C-terminal PF553_18395 IPR001789 Signal transduction response regulator, receiver domain PF553_18395 IPR011006 CheY-like superfamily PF553_18395 IPR016032 Signal transduction response regulator, C-terminal effector PF553_18400 IPR029039 Flavoprotein-like superfamily PF553_18400 IPR019912 FMN reductase, MsuE-like PF553_18400 IPR005025 NADPH-dependent FMN reductase-like PF553_18405 IPR024014 FMNH(2)-dependent dimethylsulfone monooxygenase SfnG PF553_18405 IPR011251 Luciferase-like domain PF553_18405 IPR036661 Luciferase-like domain superfamily PF553_18410 IPR000485 AsnC-type HTH domain PF553_18410 IPR011008 Dimeric alpha-beta barrel PF553_18410 IPR019888 Transcription regulator AsnC-type PF553_18410 IPR019887 Transcription regulator AsnC/Lrp, ligand binding domain PF553_18410 IPR036390 Winged helix DNA-binding domain superfamily PF553_18410 IPR036388 Winged helix-like DNA-binding domain superfamily PF553_18415 IPR000868 Isochorismatase-like PF553_18415 IPR036380 Isochorismatase-like superfamily PF553_18420 IPR011904 Acetate-CoA ligase PF553_18420 IPR032387 Acetyl-coenzyme A synthetase, N-terminal domain PF553_18420 IPR025110 AMP-binding enzyme, C-terminal domain PF553_18420 IPR020845 AMP-binding, conserved site PF553_18420 IPR000873 AMP-dependent synthetase/ligase PF553_18420 IPR042099 AMP-dependent synthetase-like superfamily PF553_18430 IPR023408 Mechanosensitive ion channel MscS domain superfamily PF553_18430 IPR011014 Mechanosensitive ion channel MscS, transmembrane-2 PF553_18430 IPR006686 Mechanosensitive ion channel MscS, conserved site PF553_18430 IPR006685 Mechanosensitive ion channel MscS PF553_18430 IPR010920 LSM domain superfamily PF553_18430 IPR011066 Mechanosensitive ion channel MscS, C-terminal PF553_18435 IPR029028 Alpha/beta knot methyltransferases PF553_18435 IPR006700 Ribosomal RNA small subunit methyltransferase E PF553_18435 IPR029026 tRNA (guanine-N1-)-methyltransferase, N-terminal PF553_18440 IPR007507 3-deoxy-D-manno-octulosonic-acid transferase, N-terminal PF553_18440 IPR038107 3-deoxy-D-manno-octulosonic-acid transferase, N-terminal domain superfamily PF553_18440 IPR039901 3-deoxy-D-manno-octulosonic acid transferase PF553_18445 IPR013785 Aldolase-type TIM barrel PF553_18445 IPR001155 NADH:flavin oxidoreductase/NADH oxidase, N-terminal PF553_18470 IPR041122 RecJ, OB domain PF553_18470 IPR038763 DHH phosphoesterase superfamily PF553_18470 IPR003156 DHHA1 domain PF553_18470 IPR004610 Bacterial RecJ exonuclease PF553_18470 IPR001667 DDH domain PF553_18475 IPR011576 Pyridoxamine 5'-phosphate oxidase, putative PF553_18475 IPR019576 Pyridoxine 5'-phosphate oxidase, dimerisation, C-terminal PF553_18475 IPR012349 FMN-binding split barrel PF553_18475 IPR019740 Pyridoxamine 5'-phosphate oxidase, conserved site PF553_18475 IPR000659 Pyridoxamine 5'-phosphate oxidase PF553_18480 IPR006352 Phosphoglucosamine mutase, bacterial type PF553_18480 IPR005841 Alpha-D-phosphohexomutase superfamily PF553_18480 IPR016066 Alpha-D-phosphohexomutase, conserved site PF553_18480 IPR036900 Alpha-D-phosphohexomutase, C-terminal domain superfamily PF553_18480 IPR005845 Alpha-D-phosphohexomutase, alpha/beta/alpha domain II PF553_18480 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III PF553_18480 IPR005844 Alpha-D-phosphohexomutase, alpha/beta/alpha domain I PF553_18480 IPR005846 Alpha-D-phosphohexomutase, alpha/beta/alpha domain III PF553_18480 IPR005843 Alpha-D-phosphohexomutase, C-terminal PF553_18485 IPR013785 Aldolase-type TIM barrel PF553_18485 IPR000644 CBS domain PF553_18485 IPR015875 IMP dehydrogenase / GMP reductase, conserved site PF553_18485 IPR001093 IMP dehydrogenase/GMP reductase PF553_18485 IPR005990 Inosine-5'-monophosphate dehydrogenase PF553_18490 IPR005358 Putative zinc- or iron-chelating domain containing protein PF553_18495 IPR012349 FMN-binding split barrel PF553_18495 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like PF553_18495 IPR001279 Metallo-beta-lactamase PF553_18495 IPR029039 Flavoprotein-like superfamily PF553_18495 IPR001226 Flavodoxin, conserved site PF553_18495 IPR008254 Flavodoxin/nitric oxide synthase PF553_18495 IPR002563 Flavin reductase like domain PF553_18500 IPR039423 TonB-dependent receptor-like PF553_18500 IPR010105 TonB-dependent siderophore receptor PF553_18500 IPR036942 TonB-dependent receptor-like, beta-barrel domain superfamily PF553_18500 IPR010917 TonB-dependent receptor, conserved site PF553_18500 IPR000531 TonB-dependent receptor-like, beta-barrel PF553_18500 IPR012910 TonB-dependent receptor, plug domain PF553_18500 IPR010916 TonB box, conserved site PF553_18500 IPR037066 TonB-dependent receptor, plug domain superfamily PF553_18505 IPR001727 Gdt1 family PF553_18515 IPR003016 2-oxo acid dehydrogenase, lipoyl-binding site PF553_18515 IPR001078 2-oxoacid dehydrogenase acyltransferase, catalytic domain PF553_18515 IPR006256 Dihydrolipoamide acetyltransferase pyruvate dehydrogenase complex PF553_18515 IPR000089 Biotin/lipoyl attachment PF553_18515 IPR023213 Chloramphenicol acetyltransferase-like domain superfamily PF553_18515 IPR036625 E3-binding domain superfamily PF553_18515 IPR004167 Peripheral subunit-binding domain PF553_18515 IPR011053 Single hybrid motif PF553_18520 IPR041621 Pyruvate dehydrogenase E1 component, middle domain PF553_18520 IPR035807 Pyruvate dehydrogenase E1 component, N-terminal PF553_18520 IPR004660 Pyruvate dehydrogenase E1 component PF553_18520 IPR029061 Thiamin diphosphate-binding fold PF553_18520 IPR005474 Transketolase, N-terminal PF553_18520 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II PF553_18525 IPR011055 Duplicated hybrid motif PF553_18525 IPR016047 Peptidase M23 PF553_18535 IPR004463 UDP-3-O-acyl N-acetylglucosamine deacetylase PF553_18535 IPR011334 UDP-3-O-acyl N-acetylglucosamine deacetylase, C-terminal PF553_18535 IPR015870 UDP-3-O-acyl N-acetylglucosamine deacetylase, N-terminal PF553_18535 IPR020568 Ribosomal protein S5 domain 2-type fold PF553_18540 IPR000158 Cell division protein FtsZ PF553_18540 IPR020805 Cell division protein FtsZ, conserved site PF553_18540 IPR024757 Cell division protein FtsZ, C-terminal PF553_18540 IPR008280 Tubulin/FtsZ, C-terminal PF553_18540 IPR018316 Tubulin/FtsZ, 2-layer sandwich domain PF553_18540 IPR036525 Tubulin/FtsZ, GTPase domain superfamily PF553_18540 IPR003008 Tubulin/FtsZ, GTPase domain PF553_18545 IPR003494 SHS2 domain inserted in FtsA PF553_18545 IPR020823 Cell division protein FtsA PF553_18550 IPR026579 Cell division protein FtsQ PF553_18550 IPR034746 POTRA domain PF553_18550 IPR013685 POTRA domain, FtsQ-type PF553_18550 IPR005548 Cell division protein FtsQ/DivIB PF553_18555 IPR011761 ATP-grasp fold PF553_18555 IPR013815 ATP-grasp fold, subdomain 1 PF553_18555 IPR005905 D-alanine--D-alanine ligase PF553_18555 IPR011095 D-alanine--D-alanine ligase, C-terminal PF553_18555 IPR011127 D-alanine--D-alanine ligase, N-terminal domain PF553_18555 IPR016185 Pre-ATP-grasp domain superfamily PF553_18555 IPR000291 D-alanine--D-alanine ligase/VANA/B/C, conserved site PF553_18560 IPR013221 Mur ligase, central PF553_18560 IPR005758 UDP-N-acetylmuramate--L-alanine ligase PF553_18560 IPR000713 Mur ligase, N-terminal catalytic domain PF553_18560 IPR036615 Mur ligase, C-terminal domain superfamily PF553_18560 IPR004101 Mur ligase, C-terminal PF553_18560 IPR036565 Mur-like, catalytic domain superfamily PF553_18565 IPR004276 Glycosyltransferase family 28, N-terminal domain PF553_18565 IPR007235 Glycosyl transferase, family 28, C-terminal PF553_18565 IPR006009 N-acetylglucosaminyltransferase, MurG PF553_18570 IPR013815 ATP-grasp fold, subdomain 1 PF553_18570 IPR011761 ATP-grasp fold PF553_18570 IPR004215 Prokaryotic glutathione synthetase, N-terminal PF553_18570 IPR016185 Pre-ATP-grasp domain superfamily PF553_18570 IPR006284 Glutathione synthetase, prokaryotic PF553_18570 IPR004218 Prokaryotic glutathione synthetase, ATP-binding PF553_18580 IPR012910 TonB-dependent receptor, plug domain PF553_18580 IPR010105 TonB-dependent siderophore receptor PF553_18580 IPR036942 TonB-dependent receptor-like, beta-barrel domain superfamily PF553_18580 IPR000531 TonB-dependent receptor-like, beta-barrel PF553_18580 IPR039423 TonB-dependent receptor-like PF553_18580 IPR037066 TonB-dependent receptor, plug domain superfamily PF553_18590 IPR023031 Orotate phosphoribosyltransferase PF553_18590 IPR004467 Orotate phosphoribosyl transferase domain PF553_18590 IPR000836 Phosphoribosyltransferase domain PF553_18590 IPR029057 Phosphoribosyltransferase-like PF553_18595 IPR004808 AP endonuclease 1 PF553_18595 IPR020847 AP endonuclease 1, binding site PF553_18595 IPR020848 AP endonuclease 1, conserved site PF553_18595 IPR036691 Endonuclease/exonuclease/phosphatase superfamily PF553_18595 IPR005135 Endonuclease/exonuclease/phosphatase PF553_18600 IPR006660 Arsenate reductase-like PF553_18600 IPR036249 Thioredoxin-like superfamily PF553_18600 IPR006504 Transcriptional regulator Spx/MgsR PF553_18610 IPR029058 Alpha/Beta hydrolase fold PF553_18610 IPR013094 Alpha/beta hydrolase fold-3 PF553_18610 IPR002168 Lipase, GDXG, putative histidine active site PF553_18610 IPR033140 Lipase, GDXG, putative serine active site PF553_18615 IPR000160 GGDEF domain PF553_18615 IPR029787 Nucleotide cyclase PF553_18615 IPR011620 Signal transduction histidine kinase, 5TM receptor LytS, transmembrane region PF553_18620 IPR013766 Thioredoxin domain PF553_18620 IPR017937 Thioredoxin, conserved site PF553_18620 IPR036249 Thioredoxin-like superfamily PF553_18620 IPR036929 Thiol:disulfide interchange protein DsbD, N-terminal domain superfamily PF553_18620 IPR022910 Thiol:disulphide interchange protein DsbD PF553_18620 IPR028250 Thiol:disulfide interchange protein DsbD, N-terminal domain PF553_18620 IPR003834 Cytochrome C biogenesis protein, transmembrane domain PF553_18620 IPR035671 DsbD gamma PF553_18650 IPR014306 Hydroxyisourate hydrolase PF553_18650 IPR023418 Transthyretin, thyroxine binding site PF553_18650 IPR023416 Transthyretin/hydroxyisourate hydrolase domain PF553_18650 IPR036817 Transthyretin/hydroxyisourate hydrolase domain superfamily PF553_18650 IPR023419 Transthyretin, conserved site PF553_18655 IPR017588 Uric acid permease UacT-like PF553_18655 IPR006042 Xanthine/uracil permease PF553_18655 IPR006043 Xanthine/uracil/vitamin C permease PF553_18665 IPR036188 FAD/NAD(P)-binding domain superfamily PF553_18665 IPR002938 FAD-binding domain PF553_18670 IPR015908 Allantoicase domain PF553_18670 IPR005164 Allantoicase PF553_18670 IPR008979 Galactose-binding-like domain superfamily PF553_18675 IPR007247 Ureidoglycolate lyase PF553_18675 IPR011051 RmlC-like cupin domain superfamily PF553_18675 IPR023525 Ureidoglycolate lyase, bacterial PF553_18675 IPR024060 Ureidoglycolate lyase domain superfamily PF553_18680 IPR002288 DNA gyrase B subunit, C-terminal PF553_18680 IPR003594 Histidine kinase/HSP90-like ATPase PF553_18680 IPR036890 Histidine kinase/HSP90-like ATPase superfamily PF553_18680 IPR020568 Ribosomal protein S5 domain 2-type fold PF553_18680 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup PF553_18680 IPR013760 DNA topoisomerase, type IIA-like domain superfamily PF553_18680 IPR013759 DNA topoisomerase, type IIA, subunit B, C-terminal PF553_18680 IPR013506 DNA topoisomerase, type IIA, subunit B, domain 2 PF553_18680 IPR018522 DNA topoisomerase, type IIA, conserved site PF553_18680 IPR005737 DNA topoisomerase IV, subunit B, Gram-negative PF553_18680 IPR006171 TOPRIM domain PF553_18680 IPR001241 DNA topoisomerase, type IIA PF553_18685 IPR029058 Alpha/Beta hydrolase fold PF553_18685 IPR008886 Uncharacterised protein family UPF0227/Esterase YqiA PF553_18700 IPR023346 Lysozyme-like domain superfamily PF553_18700 IPR000726 Glycoside hydrolase, family 19, catalytic PF553_18705 IPR025668 Transposase DDE domain PF553_18710 IPR018769 Domain of unknown function DUF2345, Vgr C-terminal PF553_18710 IPR006531 Gp5 N-terminal PF553_18710 IPR028244 Putative type VI secretion system, Rhs element associated Vgr domain PF553_18710 IPR017847 Type VI secretion system, RhsGE-associated Vgr family subset PF553_18710 IPR006533 Type VI secretion system, RhsGE-associated Vgr protein PF553_18710 IPR037026 Vgr protein, OB-fold domain superfamily PF553_18715 IPR003752 Disulphide bond formation protein DsbB/BdbC PF553_18715 IPR022920 Disulphide bond formation protein DsbB PF553_18715 IPR023380 DsbB-like superfamily PF553_18720 IPR006334 Glutamate--cysteine ligase, monofunctional PF553_18720 IPR014746 Glutamine synthetase/guanido kinase, catalytic domain PF553_18720 IPR007370 Glutamate--cysteine ligase PF553_18735 IPR007383 Protein of unknown function DUF445 PF553_18740 IPR015421 Pyridoxal phosphate-dependent transferase, major domain PF553_18740 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 PF553_18740 IPR015424 Pyridoxal phosphate-dependent transferase PF553_18740 IPR004839 Aminotransferase, class I/classII PF553_18745 IPR002528 Multi antimicrobial extrusion protein PF553_18750 IPR002347 Short-chain dehydrogenase/reductase SDR PF553_18750 IPR020904 Short-chain dehydrogenase/reductase, conserved site PF553_18750 IPR036291 NAD(P)-binding domain superfamily PF553_18760 IPR036388 Winged helix-like DNA-binding domain superfamily PF553_18760 IPR011006 CheY-like superfamily PF553_18760 IPR001867 OmpR/PhoB-type DNA-binding domain PF553_18760 IPR016032 Signal transduction response regulator, C-terminal effector PF553_18760 IPR001789 Signal transduction response regulator, receiver domain PF553_18760 IPR039420 Transcriptional regulatory protein WalR-like PF553_18760 IPR011879 Signal transduction response regulator, phosphate regulon transcriptional regulatory protein PhoB PF553_18765 IPR000014 PAS domain PF553_18765 IPR005467 Histidine kinase domain PF553_18765 IPR036890 Histidine kinase/HSP90-like ATPase superfamily PF553_18765 IPR035965 PAS domain superfamily PF553_18765 IPR013767 PAS fold PF553_18765 IPR021766 Phosphate regulon sensor protein PhoR PF553_18765 IPR004358 Signal transduction histidine kinase-related protein, C-terminal PF553_18765 IPR014310 Signal transduction histidine kinase, phosphate regulon sensor PhoR PF553_18765 IPR003594 Histidine kinase/HSP90-like ATPase PF553_18765 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain PF553_18765 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily PF553_18775 IPR003817 Phosphatidylserine decarboxylase-related PF553_18775 IPR033177 Phosphatidylserine decarboxylase PF553_18775 IPR033178 Phosphatidylserine decarboxylase, prokaryotic type 1 PF553_18780 IPR001763 Rhodanese-like domain PF553_18780 IPR036873 Rhodanese-like domain superfamily PF553_18780 IPR001307 Thiosulphate sulfurtransferase, conserved site PF553_18785 IPR040727 Nicotinate phosphoribosyltransferase, N-terminal domain PF553_18785 IPR036068 Nicotinate phosphoribosyltransferase-like, C-terminal PF553_18785 IPR006406 Nicotinate phosphoribosyltransferase PF553_18785 IPR007229 Nicotinate phosphoribosyltransferase family PF553_18785 IPR041525 Nicotinate/nicotinamide phosphoribosyltransferase PF553_18790 IPR023509 D-aminoacyl-tRNA deacylase-like superfamily PF553_18790 IPR003732 D-aminoacyl-tRNA deacylase DTD PF553_18805 IPR036412 HAD-like superfamily PF553_18805 IPR023214 HAD superfamily PF553_18805 IPR023190 Phosphoserine phosphatase, domain 2 PF553_18805 IPR002912 ACT domain PF553_18815 IPR017945 DHBP synthase RibB-like alpha/beta domain superfamily PF553_18815 IPR032677 GTP cyclohydrolase II PF553_18815 IPR036144 RibA-like superfamily PF553_18815 IPR000422 3,4-dihydroxy-2-butanone 4-phosphate synthase, RibB PF553_18820 IPR034964 Lumazine synthase PF553_18820 IPR002180 Lumazine/riboflavin synthase PF553_18820 IPR036467 Lumazine/riboflavin synthase superfamily PF553_18825 IPR035926 NusB-like superfamily PF553_18825 IPR011605 NusB antitermination factor PF553_18825 IPR006027 NusB/RsmB/TIM44 PF553_18830 IPR016188 PurM-like, N-terminal domain PF553_18830 IPR036921 PurM-like, N-terminal domain superfamily PF553_18830 IPR006283 Thiamine-monophosphate kinase PF553_18830 IPR036676 PurM-like, C-terminal domain superfamily PF553_18830 IPR010918 PurM-like, C-terminal domain PF553_18835 IPR026037 Phosphatidylglycerophosphatase A PF553_18835 IPR036681 PgpA-like superfamily PF553_18835 IPR007686 YutG/PgpA domain PF553_18840 IPR011004 Trimeric LpxA-like superfamily PF553_18840 IPR005882 Bifunctional UDP-N-acetylglucosamine pyrophosphorylase/glucosamine-1-phosphate N-acetyltransferase PF553_18840 IPR038009 GlmU, C-terminal LbH domain PF553_18840 IPR001451 Hexapeptide repeat PF553_18840 IPR018357 Hexapeptide transferase, conserved site PF553_18840 IPR025877 MobA-like NTP transferase PF553_18840 IPR029044 Nucleotide-diphospho-sugar transferases PF553_18845 IPR017932 Glutamine amidotransferase type 2 domain PF553_18845 IPR001347 Sugar isomerase (SIS) PF553_18845 IPR035490 GlmS/FrlB, SIS domain 2 PF553_18845 IPR005855 Glucosamine-fructose-6-phosphate aminotransferase, isomerising PF553_18845 IPR029055 Nucleophile aminohydrolases, N-terminal PF553_18845 IPR035466 GlmS/AgaS, SIS domain 1 PF553_18850 IPR015942 Asp/Glu/hydantoin racemase PF553_18850 IPR001920 Asp/Glu racemase PF553_18850 IPR018187 Asp/Glu racemase, active site 1 PF553_18850 IPR033134 Asp/Glu racemase, active site 2 PF553_18850 IPR004391 Glutamate racemase PF553_18865 IPR006035 Ureohydrolase PF553_18865 IPR020855 Ureohydrolase, manganese-binding site PF553_18865 IPR005923 Formiminoglutamase PF553_18865 IPR023696 Ureohydrolase domain superfamily PF553_18870 IPR006680 Amidohydrolase-related PF553_18870 IPR005920 Imidazolonepropionase PF553_18870 IPR032466 Metal-dependent hydrolase PF553_18870 IPR011059 Metal-dependent hydrolase, composite domain superfamily PF553_18875 IPR004840 Amino acid permease, conserved site PF553_18875 IPR004841 Amino acid permease/ SLC12A domain PF553_18880 IPR005921 Histidine ammonia-lyase PF553_18880 IPR008948 L-Aspartase-like PF553_18880 IPR001106 Aromatic amino acid lyase PF553_18880 IPR022313 Phenylalanine/histidine ammonia-lyases, active site PF553_18880 IPR024083 Fumarase/histidase, N-terminal PF553_18885 IPR036190 Urocanase superfamily PF553_18885 IPR035085 Urocanase, Rossmann-like domain PF553_18885 IPR035400 Urocanase, N-terminal domain PF553_18885 IPR023637 Urocanase PF553_18885 IPR038364 Urocanase, central domain superfamily PF553_18885 IPR023636 Urocanase conserved site PF553_18885 IPR035401 Urocanase, C-terminal domain PF553_18890 IPR036397 Ribonuclease H superfamily PF553_18890 IPR001584 Integrase, catalytic core PF553_18890 IPR032874 DDE domain PF553_18890 IPR012337 Ribonuclease H-like superfamily PF553_18900 IPR019897 RidA, conserved site PF553_18900 IPR035959 RutC-like superfamily PF553_18900 IPR006175 YjgF/YER057c/UK114 family PF553_18900 IPR035709 RutC family, YoaB-like PF553_18905 IPR009006 Alanine racemase/group IV decarboxylase, C-terminal PF553_18905 IPR029066 PLP-binding barrel PF553_18905 IPR020622 Alanine racemase, pyridoxal-phosphate attachment site PF553_18905 IPR001608 Alanine racemase, N-terminal PF553_18905 IPR011079 Alanine racemase, C-terminal PF553_18905 IPR000821 Alanine racemase PF553_18910 IPR036188 FAD/NAD(P)-binding domain superfamily PF553_18910 IPR006076 FAD dependent oxidoreductase PF553_18910 IPR023080 D-amino acid dehydrogenase DadA PF553_18915 IPR019885 Transcription regulator HTH, AsnC-type, conserved site PF553_18915 IPR019887 Transcription regulator AsnC/Lrp, ligand binding domain PF553_18915 IPR036390 Winged helix DNA-binding domain superfamily PF553_18915 IPR000485 AsnC-type HTH domain PF553_18915 IPR011008 Dimeric alpha-beta barrel PF553_18915 IPR011991 ArsR-like helix-turn-helix domain PF553_18915 IPR019888 Transcription regulator AsnC-type PF553_18915 IPR036388 Winged helix-like DNA-binding domain superfamily PF553_18925 IPR036942 TonB-dependent receptor-like, beta-barrel domain superfamily PF553_18925 IPR012910 TonB-dependent receptor, plug domain PF553_18925 IPR037066 TonB-dependent receptor, plug domain superfamily PF553_18925 IPR039423 TonB-dependent receptor-like PF553_18925 IPR000531 TonB-dependent receptor-like, beta-barrel PF553_18925 IPR010105 TonB-dependent siderophore receptor PF553_18940 IPR006145 Pseudouridine synthase, RsuA/RluA PF553_18940 IPR020103 Pseudouridine synthase, catalytic domain superfamily PF553_18940 IPR006225 Pseudouridine synthase, RluC/RluD PF553_18940 IPR006224 Pseudouridine synthase, RluC/RluD, conserved site PF553_18970 IPR037026 Vgr protein, OB-fold domain superfamily PF553_18970 IPR006533 Type VI secretion system, RhsGE-associated Vgr protein PF553_18970 IPR018769 Domain of unknown function DUF2345, Vgr C-terminal PF553_18970 IPR006531 Gp5 N-terminal PF553_18970 IPR028244 Putative type VI secretion system, Rhs element associated Vgr domain PF553_18970 IPR017847 Type VI secretion system, RhsGE-associated Vgr family subset PF553_18980 IPR014031 Beta-ketoacyl synthase, C-terminal PF553_18980 IPR000794 Beta-ketoacyl synthase PF553_18980 IPR016039 Thiolase-like PF553_18980 IPR020841 Polyketide synthase, beta-ketoacyl synthase domain PF553_18980 IPR014030 Beta-ketoacyl synthase, N-terminal PF553_18980 IPR018201 Beta-ketoacyl synthase, active site PF553_19010 IPR015931 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha, subdomain 1/3 PF553_19010 IPR012708 2-methylisocitrate dehydratase AcnD, Fe/S-dependent PF553_19010 IPR006249 Aconitase/Iron-responsive element-binding protein 2 PF553_19010 IPR036008 Aconitase, iron-sulfur domain PF553_19010 IPR000573 Aconitase A/isopropylmalate dehydratase small subunit, swivel domain PF553_19010 IPR015928 Aconitase/3-isopropylmalate dehydratase, swivel PF553_19010 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain PF553_19015 IPR011278 2-methylcitrate synthase/citrate synthase type I PF553_19015 IPR036969 Citrate synthase superfamily PF553_19015 IPR024176 Citrate synthase, bacterial-type PF553_19015 IPR019810 Citrate synthase active site PF553_19015 IPR002020 Citrate synthase PF553_19015 IPR016143 Citrate synthase-like, small alpha subdomain PF553_19015 IPR016142 Citrate synthase-like, large alpha subdomain PF553_19020 IPR040442 Pyruvate kinase-like domain superfamily PF553_19020 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain superfamily PF553_19020 IPR018523 Isocitrate lyase/phosphorylmutase, conserved site PF553_19020 IPR039556 ICL/PEPM domain PF553_19020 IPR012695 2-methylisocitrate lyase PF553_19025 IPR036390 Winged helix DNA-binding domain superfamily PF553_19025 IPR000524 Transcription regulator HTH, GntR PF553_19025 IPR008920 Transcription regulator FadR/GntR, C-terminal PF553_19025 IPR011711 GntR, C-terminal PF553_19025 IPR000485 AsnC-type HTH domain PF553_19025 IPR036388 Winged helix-like DNA-binding domain superfamily PF553_19035 IPR004839 Aminotransferase, class I/classII PF553_19035 IPR015421 Pyridoxal phosphate-dependent transferase, major domain PF553_19035 IPR000796 Aspartate/other aminotransferase PF553_19035 IPR004838 Aminotransferases, class-I, pyridoxal-phosphate-binding site PF553_19035 IPR015424 Pyridoxal phosphate-dependent transferase PF553_19035 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 PF553_19040 IPR016166 FAD-binding domain, PCMH-type PF553_19040 IPR036318 FAD-binding, type PCMH-like superfamily PF553_19040 IPR016167 FAD-binding, type PCMH, subdomain 1 PF553_19040 IPR016172 D-lactate dehydrogenase, C-terminal subdomain 1 PF553_19040 IPR016164 FAD-linked oxidase-like, C-terminal PF553_19040 IPR015409 D-lactate dehydrogenase, membrane binding, C-terminal PF553_19040 IPR016173 D-lactate dehydrogenase, C-terminal subdomain 2 PF553_19040 IPR006094 FAD linked oxidase, N-terminal PF553_19040 IPR012256 D-lactate dehydrogenase PF553_19040 IPR016169 FAD-binding, type PCMH, subdomain 2 PF553_19045 IPR013785 Aldolase-type TIM barrel PF553_19045 IPR000262 FMN-dependent dehydrogenase PF553_19045 IPR037396 FMN hydroxy acid dehydrogenase domain PF553_19045 IPR008259 FMN-dependent alpha-hydroxy acid dehydrogenase, active site PF553_19045 IPR020920 L-lactate dehydrogenase, bacterial PF553_19045 IPR012133 Alpha-hydroxy acid dehydrogenase, FMN-dependent PF553_19050 IPR011711 GntR, C-terminal PF553_19050 IPR008920 Transcription regulator FadR/GntR, C-terminal PF553_19050 IPR000524 Transcription regulator HTH, GntR PF553_19050 IPR036388 Winged helix-like DNA-binding domain superfamily PF553_19050 IPR036390 Winged helix DNA-binding domain superfamily PF553_19055 IPR003804 L-lactate permease PF553_19060 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III PF553_19060 IPR005841 Alpha-D-phosphohexomutase superfamily PF553_19060 IPR005845 Alpha-D-phosphohexomutase, alpha/beta/alpha domain II PF553_19060 IPR016066 Alpha-D-phosphohexomutase, conserved site PF553_19060 IPR036900 Alpha-D-phosphohexomutase, C-terminal domain superfamily PF553_19060 IPR005843 Alpha-D-phosphohexomutase, C-terminal PF553_19060 IPR005844 Alpha-D-phosphohexomutase, alpha/beta/alpha domain I PF553_19060 IPR005846 Alpha-D-phosphohexomutase, alpha/beta/alpha domain III PF553_19065 IPR036291 NAD(P)-binding domain superfamily PF553_19065 IPR016040 NAD(P)-binding domain PF553_19065 IPR005886 UDP-glucose 4-epimerase PF553_19070 IPR035476 Phosphoglucose isomerase, SIS domain 1 PF553_19070 IPR023096 Phosphoglucose isomerase, C-terminal PF553_19070 IPR001672 Phosphoglucose isomerase (PGI) PF553_19070 IPR035482 Phosphoglucose isomerase, SIS domain 2 PF553_19070 IPR018189 Phosphoglucose isomerase, conserved site PF553_19075 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily PF553_19075 IPR036291 NAD(P)-binding domain superfamily PF553_19075 IPR017476 UDP-glucose/GDP-mannose dehydrogenase PF553_19075 IPR036220 UDP-glucose/GDP-mannose dehydrogenase, C-terminal domain superfamily PF553_19075 IPR001732 UDP-glucose/GDP-mannose dehydrogenase, N-terminal PF553_19075 IPR028357 UDP-glucose 6-dehydrogenase, bacterial type PF553_19075 IPR014026 UDP-glucose/GDP-mannose dehydrogenase, dimerisation PF553_19075 IPR014027 UDP-glucose/GDP-mannose dehydrogenase, C-terminal PF553_19080 IPR005771 UTP--glucose-1-phosphate uridylyltransferase, bacterial/archaeal-type PF553_19080 IPR005835 Nucleotidyl transferase domain PF553_19080 IPR029044 Nucleotide-diphospho-sugar transferases PF553_19085 IPR003362 Bacterial sugar transferase PF553_19090 IPR029044 Nucleotide-diphospho-sugar transferases PF553_19090 IPR001173 Glycosyltransferase 2-like PF553_19095 IPR001296 Glycosyl transferase, family 1 PF553_19110 IPR001296 Glycosyl transferase, family 1 PF553_19110 IPR017814 Mycothiol biosynthesis protein, MshA PF553_19110 IPR028098 Glycosyltransferase subfamily 4-like, N-terminal domain PF553_19115 IPR011004 Trimeric LpxA-like superfamily PF553_19115 IPR024688 Maltose/galactoside acetyltransferase PF553_19115 IPR039369 Galactoside O-acetyltransferase LacA-like PF553_19115 IPR001451 Hexapeptide repeat PF553_19125 IPR015421 Pyridoxal phosphate-dependent transferase, major domain PF553_19125 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 PF553_19125 IPR015424 Pyridoxal phosphate-dependent transferase PF553_19125 IPR000653 DegT/DnrJ/EryC1/StrS aminotransferase PF553_19130 IPR011004 Trimeric LpxA-like superfamily PF553_19130 IPR001451 Hexapeptide repeat PF553_19135 IPR004104 Oxidoreductase, C-terminal PF553_19135 IPR000683 Oxidoreductase, N-terminal PF553_19135 IPR036291 NAD(P)-binding domain superfamily PF553_19140 IPR028359 UDP-N-acetyl-D-mannosamine/glucosamine dehydrogenase PF553_19140 IPR001732 UDP-glucose/GDP-mannose dehydrogenase, N-terminal PF553_19140 IPR014026 UDP-glucose/GDP-mannose dehydrogenase, dimerisation PF553_19140 IPR036220 UDP-glucose/GDP-mannose dehydrogenase, C-terminal domain superfamily PF553_19140 IPR014027 UDP-glucose/GDP-mannose dehydrogenase, C-terminal PF553_19140 IPR017476 UDP-glucose/GDP-mannose dehydrogenase PF553_19140 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily PF553_19140 IPR036291 NAD(P)-binding domain superfamily PF553_19145 IPR040716 Outer-membrane lipoprotein Wza, C-terminal domain PF553_19145 IPR019554 Soluble ligand binding domain PF553_19145 IPR003715 Polysaccharide export protein PF553_19150 IPR036196 Phosphotyrosine protein phosphatase I superfamily PF553_19150 IPR017867 Protein-tyrosine phosphatase, low molecular weight PF553_19150 IPR023485 Phosphotyrosine protein phosphatase I PF553_19155 IPR025669 AAA domain PF553_19155 IPR032807 Tyrosine kinase, G-rich domain PF553_19155 IPR003856 Polysaccharide chain length determinant N-terminal domain PF553_19155 IPR027417 P-loop containing nucleoside triphosphate hydrolase PF553_19155 IPR005702 Exopolysaccharide synthesis protein PF553_19160 IPR008104 Macrophage infectivity potentiator PF553_19160 IPR000774 Peptidyl-prolyl cis-trans isomerase, FKBP-type, N-terminal PF553_19160 IPR036944 Peptidyl-prolyl cis-trans isomerase, FKBP-type, N-terminal domain superfamily PF553_19160 IPR001179 FKBP-type peptidyl-prolyl cis-trans isomerase domain PF553_19165 IPR008104 Macrophage infectivity potentiator PF553_19165 IPR001179 FKBP-type peptidyl-prolyl cis-trans isomerase domain PF553_19165 IPR000774 Peptidyl-prolyl cis-trans isomerase, FKBP-type, N-terminal PF553_19165 IPR036944 Peptidyl-prolyl cis-trans isomerase, FKBP-type, N-terminal domain superfamily PF553_19170 IPR004268 Peptidoglycan biosynthesis protein MurJ PF553_19175 IPR036505 N-acetylmuramoyl-L-alanine amidase/PGRP domain superfamily PF553_19175 IPR002502 N-acetylmuramoyl-L-alanine amidase domain PF553_19180 IPR022412 Quinolinate phosphoribosyl transferase, N-terminal PF553_19180 IPR002638 Quinolinate phosphoribosyl transferase, C-terminal PF553_19180 IPR037128 Quinolinate phosphoribosyl transferase, N-terminal domain superfamily PF553_19180 IPR036068 Nicotinate phosphoribosyltransferase-like, C-terminal PF553_19180 IPR027277 Nicotinate-nucleotide pyrophosphorylase/Putative pyrophosphorylase ModD PF553_19180 IPR004393 Nicotinate-nucleotide pyrophosphorylase PF553_19180 IPR013785 Aldolase-type TIM barrel PF553_19200 IPR018336 Ribonuclease PH, conserved site PF553_19200 IPR036345 Exoribonuclease, PH domain 2 superfamily PF553_19200 IPR015847 Exoribonuclease, phosphorolytic domain 2 PF553_19200 IPR001247 Exoribonuclease, phosphorolytic domain 1 PF553_19200 IPR002381 Ribonuclease PH, bacterial-type PF553_19200 IPR020568 Ribosomal protein S5 domain 2-type fold PF553_19200 IPR027408 PNPase/RNase PH domain superfamily PF553_19205 IPR005804 Fatty acid desaturase domain PF553_19210 IPR017927 FAD-binding domain, ferredoxin reductase-type PF553_19210 IPR039261 Ferredoxin-NADP reductase (FNR), nucleotide-binding domain PF553_19210 IPR017938 Riboflavin synthase-like beta-barrel PF553_19210 IPR001433 Oxidoreductase FAD/NAD(P)-binding PF553_19215 IPR009057 Homeobox-like domain superfamily PF553_19215 IPR001647 DNA-binding HTH domain, TetR-type PF553_19215 IPR023764 Transcriptional repressor HTH, FabR PF553_19220 IPR023772 DNA-binding HTH domain, TetR-type, conserved site PF553_19220 IPR009057 Homeobox-like domain superfamily PF553_19220 IPR001647 DNA-binding HTH domain, TetR-type PF553_19220 IPR013571 Transcription regulator QacR, C-terminal PF553_19220 IPR036271 Tetracyclin repressor-like, C-terminal domain superfamily PF553_19225 IPR013766 Thioredoxin domain PF553_19225 IPR017937 Thioredoxin, conserved site PF553_19225 IPR036249 Thioredoxin-like superfamily PF553_19225 IPR023205 Thiol:disulphide interchange protein DsbA/DsbL PF553_19225 IPR001853 DSBA-like thioredoxin domain PF553_19230 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase PF553_19230 IPR010233 Ubiquinone biosynthesis O-methyltransferase PF553_19235 IPR006346 2-phosphoglycolate phosphatase-like, prokaryotic PF553_19235 IPR023214 HAD superfamily PF553_19235 IPR041492 Haloacid dehalogenase-like hydrolase PF553_19235 IPR006439 HAD hydrolase, subfamily IA PF553_19235 IPR036412 HAD-like superfamily PF553_19235 IPR023198 Phosphoglycolate phosphatase-like, domain 2 PF553_19240 IPR036291 NAD(P)-binding domain superfamily PF553_19240 IPR002347 Short-chain dehydrogenase/reductase SDR PF553_19240 IPR020904 Short-chain dehydrogenase/reductase, conserved site PF553_19255 IPR036393 Acetylglutamate kinase-like superfamily PF553_19255 IPR016181 Acyl-CoA N-acyltransferase PF553_19255 IPR001048 Aspartate/glutamate/uridylate kinase PF553_19255 IPR000182 GNAT domain PF553_19255 IPR010167 Amino-acid N-acetyltransferase PF553_19255 IPR033719 N-acetylglutamate synthase, kinase-like domain PF553_19260 IPR010067 Aliphatic sulfonates-binding protein PF553_19260 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF PF553_19260 IPR015168 SsuA/THI5-like PF553_19265 IPR015168 SsuA/THI5-like PF553_19265 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF PF553_19265 IPR010067 Aliphatic sulfonates-binding protein PF553_19270 IPR036661 Luciferase-like domain superfamily PF553_19270 IPR011251 Luciferase-like domain PF553_19270 IPR019911 Alkanesulphonate monooxygenase, FMN-dependent PF553_19275 IPR035906 MetI-like superfamily PF553_19275 IPR000515 ABC transporter type 1, transmembrane domain MetI-like PF553_19280 IPR003439 ABC transporter-like PF553_19280 IPR003593 AAA+ ATPase domain PF553_19280 IPR017875 Aliphatic sulfonates import ATP-binding protein SsuB PF553_19280 IPR027417 P-loop containing nucleoside triphosphate hydrolase PF553_19285 IPR009057 Homeobox-like domain superfamily PF553_19285 IPR013573 Transcription regulator YcdC, C-terminal PF553_19285 IPR019915 Transcription regulator, pyrimidine utilisation, RutR PF553_19285 IPR001647 DNA-binding HTH domain, TetR-type PF553_19285 IPR036271 Tetracyclin repressor-like, C-terminal domain superfamily PF553_19290 IPR035994 Nucleoside phosphorylase superfamily PF553_19290 IPR000845 Nucleoside phosphorylase domain PF553_19290 IPR010049 MTA/SAH nucleosidase PF553_19300 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold PF553_19300 IPR023465 Riboflavin kinase domain superfamily PF553_19300 IPR015865 Riboflavin kinase domain, bacterial/eukaryotic PF553_19300 IPR023468 Riboflavin kinase PF553_19300 IPR015864 FAD synthetase PF553_19300 IPR002606 Riboflavin kinase, bacterial PF553_19305 IPR013155 Methionyl/Valyl/Leucyl/Isoleucyl-tRNA synthetase, anticodon-binding PF553_19305 IPR002300 Aminoacyl-tRNA synthetase, class Ia PF553_19305 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site PF553_19305 IPR023585 Isoleucine-tRNA ligase, type 1 PF553_19305 IPR033708 Isoleucyl tRNA synthetase type 1, anticodon-binding domain PF553_19305 IPR002301 Isoleucine-tRNA ligase PF553_19305 IPR010663 Zinc finger, FPG/IleRS-type PF553_19305 IPR009008 Valyl/Leucyl/Isoleucyl-tRNA synthetase, editing domain PF553_19305 IPR009080 Aminoacyl-tRNA synthetase, class Ia, anticodon-binding PF553_19305 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold PF553_19310 IPR001872 Peptidase A8, signal peptidase II PF553_19315 IPR001179 FKBP-type peptidyl-prolyl cis-trans isomerase domain PF553_19355 IPR029000 Cyclophilin-like domain superfamily PF553_19355 IPR002130 Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain PF553_19355 IPR020892 Cyclophilin-type peptidyl-prolyl cis-trans isomerase, conserved site PF553_19360 IPR029058 Alpha/Beta hydrolase fold PF553_19360 IPR013094 Alpha/beta hydrolase fold-3 PF553_19380 IPR036388 Winged helix-like DNA-binding domain superfamily PF553_19380 IPR036390 Winged helix DNA-binding domain superfamily PF553_19380 IPR000847 Transcription regulator HTH, LysR PF553_19380 IPR005119 LysR, substrate-binding PF553_19385 IPR009012 GrpE nucleotide exchange factor, head PF553_19385 IPR013805 GrpE nucleotide exchange factor, coiled-coil PF553_19385 IPR000740 GrpE nucleotide exchange factor PF553_19390 IPR018181 Heat shock protein 70, conserved site PF553_19390 IPR013126 Heat shock protein 70 family PF553_19390 IPR029047 Heat shock protein 70kD, peptide-binding domain superfamily PF553_19390 IPR029048 Heat shock protein 70kD, C-terminal domain superfamily PF553_19390 IPR012725 Chaperone DnaK PF553_19410 IPR031304 Transglycosylase SLT domain 2 PF553_19410 IPR023346 Lysozyme-like domain superfamily PF553_19410 IPR011757 Lytic transglycosylase MltB PF553_19415 IPR013815 ATP-grasp fold, subdomain 1 PF553_19415 IPR011054 Rudiment single hybrid motif PF553_19415 IPR011761 ATP-grasp fold PF553_19415 IPR003135 ATP-grasp fold, ATP-dependent carboxylate-amine ligase-type PF553_19415 IPR040686 Phosphoribosylaminoimidazole carboxylase, C-terminal domain PF553_19415 IPR016185 Pre-ATP-grasp domain superfamily PF553_19415 IPR005875 Phosphoribosylaminoimidazole carboxylase, ATPase subunit PF553_19420 IPR035893 PurE domain superfamily PF553_19420 IPR024694 PurE, prokaryotic type PF553_19420 IPR000031 PurE domain PF553_19420 IPR033747 Class I PurE PF553_19430 IPR036615 Mur ligase, C-terminal domain superfamily PF553_19430 IPR005757 Murein peptide ligase PF553_19430 IPR000713 Mur ligase, N-terminal catalytic domain PF553_19430 IPR013221 Mur ligase, central PF553_19430 IPR004101 Mur ligase, C-terminal PF553_19430 IPR036565 Mur-like, catalytic domain superfamily PF553_19440 IPR033879 Undecaprenyl-diphosphatase PF553_19440 IPR000326 Phosphatidic acid phosphatase type 2/haloperoxidase PF553_19440 IPR036938 Phosphatidic acid phosphatase type 2/haloperoxidase superfamily PF553_19445 IPR005496 Integral membrane protein TerC PF553_19445 IPR022369 Integral membrane protein TerC, riboswitch-linked PF553_19455 IPR005494 Glutathionylspermidine synthase, pre-ATP-grasp-like domain PF553_19455 IPR016185 Pre-ATP-grasp domain superfamily PF553_19465 IPR032466 Metal-dependent hydrolase PF553_19465 IPR011059 Metal-dependent hydrolase, composite domain superfamily PF553_19465 IPR014311 Guanine deaminase PF553_19465 IPR006680 Amidohydrolase-related PF553_19470 IPR000836 Phosphoribosyltransferase domain PF553_19470 IPR005904 Hypoxanthine phosphoribosyl transferase PF553_19470 IPR029057 Phosphoribosyltransferase-like PF553_19480 IPR036249 Thioredoxin-like superfamily PF553_19480 IPR033954 Disulphide bond isomerase, DsbC/G PF553_19480 IPR018950 Disulphide bond isomerase, DsbC/G, N-terminal PF553_19480 IPR009094 Disulphide bond isomerase DsbC/G, N-terminal domain superfamily PF553_19480 IPR012336 Thioredoxin-like fold PF553_19480 IPR017937 Thioredoxin, conserved site PF553_19485 IPR036837 Cation efflux protein, cytoplasmic domain superfamily PF553_19485 IPR027469 Cation efflux transmembrane domain superfamily PF553_19485 IPR002524 Cation efflux protein PF553_19485 IPR027470 Cation efflux protein, cytoplasmic domain PF553_19490 IPR003735 Metal-sensitive transcriptional repressor PF553_19490 IPR038390 Metal-sensitive transcriptional repressor superfamily PF553_19495 IPR027266 GTP-binding protein TrmE/Glycine cleavage system T protein, domain 1 PF553_19495 IPR005225 Small GTP-binding protein domain PF553_19495 IPR025867 MnmE, helical domain PF553_19495 IPR027368 tRNA modification GTPase MnmE domain 2 PF553_19495 IPR027417 P-loop containing nucleoside triphosphate hydrolase PF553_19495 IPR006073 GTP binding domain PF553_19495 IPR018948 GTP-binding protein TrmE, N-terminal PF553_19495 IPR031168 TrmE-type guanine nucleotide-binding domain PF553_19495 IPR004520 tRNA modification GTPase MnmE PF553_19500 IPR019998 Membrane insertase YidC PF553_19500 IPR028055 Membrane insertase YidC/Oxa1, C-terminal PF553_19500 IPR028053 Membrane insertase YidC, N-terminal PF553_19500 IPR001708 Membrane insertase YidC/ALB3/OXA1/COX18 PF553_19500 IPR038210 Membrane insertase YidC, periplasmic domain PF553_19500 IPR038221 YidC, periplasmic domain superfamily PF553_19505 IPR002696 Putative membrane protein insertion efficiency factor PF553_19510 IPR020539 Ribonuclease P, conserved site PF553_19510 IPR000100 Ribonuclease P PF553_19510 IPR020568 Ribosomal protein S5 domain 2-type fold PF553_19510 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup PF553_19515 IPR000271 Ribosomal protein L34 PF553_19515 IPR020939 Ribosomal protein L34, conserved site PF553_19530 IPR000064 Endopeptidase, NLPC/P60 domain PF553_19530 IPR038765 Papain-like cysteine peptidase superfamily PF553_19640 IPR027417 P-loop containing nucleoside triphosphate hydrolase PF553_19640 IPR018449 NIL domain PF553_19640 IPR041701 Methionine import ATP-binding protein MetN, ATP-binding cassette domain PF553_19640 IPR017908 ABC transporter, methionine import, ATP-binding protein, MetN, C-terminal PF553_19640 IPR017871 ABC transporter, conserved site PF553_19640 IPR003439 ABC transporter-like PF553_19640 IPR026253 Methionine import ATP-binding protein MetN PF553_19640 IPR003593 AAA+ ATPase domain PF553_19645 IPR003115 ParB/Sulfiredoxin PF553_19645 IPR036086 ParB/Sulfiredoxin superfamily PF553_19775 IPR036397 Ribonuclease H superfamily PF553_19775 IPR012337 Ribonuclease H-like superfamily PF553_19775 IPR013520 Exonuclease, RNase T/DNA polymerase III PF553_19775 IPR006309 DNA polymerase 3, epsilon subunit PF553_19775 IPR006054 DNA polymerase III epsilon subunit, exonuclease domain PF553_19865 IPR029054 dUTPase-like PF553_19865 IPR036157 dUTPase-like superfamily PF553_19865 IPR008181 Deoxyuridine triphosphate nucleotidohydrolase PF553_19865 IPR033704 dUTPase, trimeric PF553_19890 IPR000358 Ribonucleotide reductase small subunit family PF553_19890 IPR030475 Ribonucleotide reductase small subunit, acitve site PF553_19890 IPR033909 Ribonucleotide reductase small subunit PF553_19890 IPR012348 Ribonucleotide reductase-like PF553_19890 IPR009078 Ferritin-like superfamily PF553_19895 IPR005144 ATP-cone domain PF553_19895 IPR013346 Ribonucleotide reductase, class I , alpha subunit PF553_19895 IPR000788 Ribonucleotide reductase large subunit, C-terminal PF553_19895 IPR008926 Ribonucleotide reductase R1 subunit, N-terminal PF553_19895 IPR039718 Ribonucleoside-diphosphate reductase large subunit PF553_19895 IPR013509 Ribonucleotide reductase large subunit, N-terminal PF553_19920 IPR038729 Rad50/SbcC-type AAA domain PF553_19920 IPR027417 P-loop containing nucleoside triphosphate hydrolase PF553_19965 IPR003593 AAA+ ATPase domain PF553_19965 IPR013765 DNA recombination and repair protein RecA PF553_19965 IPR020584 DNA recombination/repair protein RecA, conserved site PF553_19965 IPR027417 P-loop containing nucleoside triphosphate hydrolase PF553_19965 IPR020588 DNA recombination and repair protein RecA-like, ATP-binding domain PF553_19965 IPR023400 DNA recombination and repair protein RecA, C-terminal PF553_19965 IPR020587 DNA recombination and repair protein RecA, monomer-monomer interface PF553_19985 IPR004805 DNA polymerase III, alpha subunit PF553_19985 IPR003141 Polymerase/histidinol phosphatase, N-terminal PF553_19985 IPR004013 PHP domain PF553_19985 IPR036895 Uracil-DNA glycosylase-like domain superfamily PF553_19985 IPR040982 DNA polymerase III alpha subunit finger domain PF553_19985 IPR011708 Bacterial DNA polymerase III, alpha subunit, NTPase domain PF553_19985 IPR029460 DNA polymerase, helix-hairpin-helix motif PF553_20020 IPR004107 Integrase, SAM-like, N-terminal PF553_20020 IPR010998 Integrase/recombinase, N-terminal PF553_20020 IPR023009 Tyrosine recombinase XerC/XerD PF553_20020 IPR013762 Integrase-like, catalytic domain superfamily PF553_20020 IPR011010 DNA breaking-rejoining enzyme, catalytic core PF553_20020 IPR002104 Integrase, catalytic domain PF553_20045 IPR008145 Guanylate kinase/L-type calcium channel beta subunit PF553_20045 IPR008144 Guanylate kinase-like domain PF553_20045 IPR017665 Guanylate kinase PF553_20045 IPR020590 Guanylate kinase, conserved site PF553_20045 IPR027417 P-loop containing nucleoside triphosphate hydrolase PF553_20085 IPR030846 DNA primase DnaG, bacteria PF553_20085 IPR034151 Bacterial DnaG primase, TOPRIM domain PF553_20085 IPR036977 DNA Primase, CHC2-type zinc finger PF553_20085 IPR006171 TOPRIM domain PF553_20085 IPR019475 DNA primase, DnaB-helicase binding domain PF553_20085 IPR037068 DNA primase, catalytic core, N-terminal domain superfamily PF553_20085 IPR013264 DNA primase, catalytic core, N-terminal PF553_20085 IPR006295 DNA primase, DnaG PF553_20085 IPR002694 Zinc finger, CHC2-type