locus-tag class description PF553_00005 PF00308 Bacterial dnaA protein PF553_00005 PF08299 Bacterial dnaA protein helix-turn-helix PF553_00005 PF11638 DnaA N-terminal domain PF553_00010 PF00712 DNA polymerase III beta subunit, N-terminal domain PF553_00010 PF02767 DNA polymerase III beta subunit, central domain PF553_00010 PF02768 DNA polymerase III beta subunit, C-terminal domain PF553_00015 PF02463 RecF/RecN/SMC N terminal domain PF553_00020 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PF553_00020 PF18053 DNA gyrase B subunit insert domain PF553_00020 PF01751 Toprim domain PF553_00020 PF00204 DNA gyrase B PF553_00020 PF00986 DNA gyrase B subunit, carboxyl terminus PF553_00030 PF09335 SNARE associated Golgi protein PF553_00035 PF00005 ABC transporter PF553_00035 PF12848 ABC transporter PF553_00055 PF01521 Iron-sulphur cluster biosynthesis PF553_00060 PF00561 alpha/beta hydrolase fold PF553_00065 PF03702 Anhydro-N-acetylmuramic acid kinase PF553_00070 PF00579 tRNA synthetases class I (W and Y) PF553_00110 PF00209 Sodium:neurotransmitter symporter family PF553_00120 PF01029 NusB family PF553_00120 PF01189 16S rRNA methyltransferase RsmB/F PF553_00125 PF02911 Formyl transferase, C-terminal domain PF553_00125 PF00551 Formyl transferase PF553_00130 PF00920 Dehydratase family PF553_00145 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family PF553_00145 PF03466 LysR substrate binding domain PF553_00150 PF00860 Permease family PF553_00155 PF00311 Phosphoenolpyruvate carboxylase PF553_00165 PF13610 DDE domain PF553_00170 PF10706 Aminoglycoside-2''-adenylyltransferase PF553_00175 PF01636 Phosphotransferase enzyme family PF553_00180 PF00005 ABC transporter PF553_00185 PF13610 DDE domain PF553_00200 PF00392 Bacterial regulatory proteins, gntR family PF553_00200 PF07702 UTRA domain PF553_00210 PF07683 Cobalamin synthesis protein cobW C-terminal domain PF553_00210 PF02492 CobW/HypB/UreG, nucleotide-binding domain PF553_00220 PF00324 Amino acid permease PF553_00230 PF14497 Glutathione S-transferase, C-terminal domain PF553_00230 PF02798 Glutathione S-transferase, N-terminal domain PF553_00235 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily PF553_00245 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily PF553_00250 PF04463 Protein of unknown function (DUF523) PF553_00260 PF01758 Sodium Bile acid symporter family PF553_00265 PF00857 Isochorismatase family PF553_00270 PF00701 Dihydrodipicolinate synthetase family PF553_00280 PF01259 SAICAR synthetase PF553_00290 PF01226 Formate/nitrite transporter PF553_00295 PF00004 ATPase family associated with various cellular activities (AAA) PF553_00295 PF16193 AAA C-terminal domain PF553_00295 PF12002 MgsA AAA+ ATPase C terminal PF553_00300 PF07995 Glucose / Sorbosone dehydrogenase PF553_00305 PF03692 Putative zinc- or iron-chelating domain PF553_00310 PF07043 Protein of unknown function (DUF1328) PF553_00325 PF14815 NUDIX domain PF553_00325 PF00730 HhH-GPD superfamily base excision DNA repair protein PF553_00325 PF00633 Helix-hairpin-helix motif PF553_00325 PF10576 Iron-sulfur binding domain of endonuclease III PF553_00340 PF03352 Methyladenine glycosylase PF553_00345 PF08240 Alcohol dehydrogenase GroES-like domain PF553_00345 PF00107 Zinc-binding dehydrogenase PF553_00350 PF00392 Bacterial regulatory proteins, gntR family PF553_00350 PF00155 Aminotransferase class I and II PF553_00365 PF03466 LysR substrate binding domain PF553_00365 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family PF553_00370 PF00248 Aldo/keto reductase family PF553_00375 PF07690 Major Facilitator Superfamily PF553_00385 PF01113 Dihydrodipicolinate reductase, N-terminus PF553_00385 PF05173 Dihydrodipicolinate reductase, C-terminus PF553_00395 PF00684 DnaJ central domain PF553_00395 PF01556 DnaJ C terminal domain PF553_00395 PF00226 DnaJ domain PF553_00405 PF00873 AcrB/AcrD/AcrF family PF553_00410 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion PF553_00420 PF13610 DDE domain PF553_00435 PF01636 Phosphotransferase enzyme family PF553_00440 PF13610 DDE domain PF553_00450 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I PF553_00450 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II PF553_00450 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain PF553_00450 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III PF553_00455 PF00809 Pterin binding enzyme PF553_00480 PF13610 DDE domain PF553_00485 PF00324 Amino acid permease PF553_00495 PF00171 Aldehyde dehydrogenase family PF553_00500 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase PF553_00500 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase PF553_00505 PF13193 AMP-binding enzyme C-terminal domain PF553_00505 PF00501 AMP-binding enzyme PF553_00510 PF02771 Acyl-CoA dehydrogenase, N-terminal domain PF553_00510 PF02770 Acyl-CoA dehydrogenase, middle domain PF553_00510 PF00441 Acyl-CoA dehydrogenase, C-terminal domain PF553_00515 PF00378 Enoyl-CoA hydratase/isomerase PF553_00520 PF00378 Enoyl-CoA hydratase/isomerase PF553_00525 PF07690 Major Facilitator Superfamily PF553_00525 PF00083 Sugar (and other) transporter PF553_00530 PF00765 Autoinducer synthase PF553_00540 PF03472 Autoinducer binding domain PF553_00540 PF00196 Bacterial regulatory proteins, luxR family PF553_00545 PF00501 AMP-binding enzyme PF553_00550 PF00441 Acyl-CoA dehydrogenase, C-terminal domain PF553_00550 PF02770 Acyl-CoA dehydrogenase, middle domain PF553_00550 PF02771 Acyl-CoA dehydrogenase, N-terminal domain PF553_00555 PF02801 Beta-ketoacyl synthase, C-terminal domain PF553_00555 PF16197 Ketoacyl-synthetase C-terminal extension PF553_00555 PF00109 Beta-ketoacyl synthase, N-terminal domain PF553_00555 PF00975 Thioesterase domain PF553_00555 PF14765 Polyketide synthase dehydratase PF553_00555 PF00550 Phosphopantetheine attachment site PF553_00555 PF08242 Methyltransferase domain PF553_00560 PF00550 Phosphopantetheine attachment site PF553_00560 PF13193 AMP-binding enzyme C-terminal domain PF553_00560 PF00668 Condensation domain PF553_00560 PF00975 Thioesterase domain PF553_00560 PF00501 AMP-binding enzyme PF553_00575 PF16363 GDP-mannose 4,6 dehydratase PF553_00595 PF13005 zinc-finger binding domain of transposase IS66 PF553_00595 PF03050 Transposase IS66 family PF553_00595 PF13817 IS66 C-terminal element PF553_00595 PF13007 Transposase C of IS166 homeodomain PF553_00615 PF01722 BolA-like protein PF553_00625 PF13614 AAA domain PF553_00640 PF09335 SNARE associated Golgi protein PF553_00645 PF07681 DoxX PF553_00650 PF04286 Protein of unknown function (DUF445) PF553_00655 PF02540 NAD synthase PF553_00655 PF00117 Glutamine amidotransferase class-I PF553_00655 PF00958 GMP synthase C terminal domain PF553_00660 PF13427 Domain of unknown function (DUF4111) PF553_00660 PF01909 Nucleotidyltransferase domain PF553_00665 PF03551 Transcriptional regulator PadR-like family PF553_00675 PF02678 Pirin PF553_00675 PF05726 Pirin C-terminal cupin domain PF553_00695 PF03485 Arginyl tRNA synthetase N terminal domain PF553_00695 PF05746 DALR anticodon binding domain PF553_00695 PF00750 tRNA synthetases class I (R) PF553_00700 PF00390 Malic enzyme, N-terminal domain PF553_00700 PF03949 Malic enzyme, NAD binding domain PF553_00710 PF04261 Dyp-type peroxidase family PF553_00715 PF01810 LysE type translocator PF553_00720 PF00950 ABC 3 transport family PF553_00725 PF00005 ABC transporter PF553_00745 PF00119 ATP synthase A chain PF553_00750 PF00137 ATP synthase subunit C PF553_00755 PF00430 ATP synthase B/B' CF(0) PF553_00760 PF00213 ATP synthase delta (OSCP) subunit PF553_00765 PF02874 ATP synthase alpha/beta family, beta-barrel domain PF553_00765 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain PF553_00765 PF00306 ATP synthase alpha/beta chain, C terminal domain PF553_00770 PF00231 ATP synthase PF553_00775 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain PF553_00775 PF02874 ATP synthase alpha/beta family, beta-barrel domain PF553_00780 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain PF553_00785 PF11008 Protein of unknown function (DUF2846) PF553_00795 PF00255 Glutathione peroxidase PF553_00805 PF07690 Major Facilitator Superfamily PF553_00810 PF00440 Bacterial regulatory proteins, tetR family PF553_00815 PF00892 EamA-like transporter family PF553_00820 PF01300 Telomere recombination PF553_00825 PF02481 DNA recombination-mediator protein A PF553_00825 PF17782 DprA winged helix domain PF553_00835 PF01327 Polypeptide deformylase PF553_00895 PF00291 Pyridoxal-phosphate dependent enzyme PF553_00905 PF03358 NADPH-dependent FMN reductase PF553_00925 PF11842 Domain of unknown function (DUF3362) PF553_00925 PF04055 Radical SAM superfamily PF553_00925 PF08497 Radical SAM N-terminal PF553_00945 PF00817 impB/mucB/samB family PF553_00945 PF11799 impB/mucB/samB family C-terminal domain PF553_00945 PF11798 IMS family HHH motif PF553_00955 PF07690 Major Facilitator Superfamily PF553_00960 PF03641 Possible lysine decarboxylase PF553_00965 PF03471 Transporter associated domain PF553_00965 PF03741 Integral membrane protein TerC family PF553_00970 PF02810 SEC-C motif PF553_00975 PF03458 UPF0126 domain PF553_00980 PF07690 Major Facilitator Superfamily PF553_00985 PF03989 DNA gyrase C-terminal domain, beta-propeller PF553_00985 PF00521 DNA gyrase/topoisomerase IV, subunit A PF553_00990 PF13193 AMP-binding enzyme C-terminal domain PF553_00990 PF00501 AMP-binding enzyme PF553_01005 PF00719 Inorganic pyrophosphatase PF553_01010 PF03573 outer membrane porin, OprD family PF553_01025 PF00701 Dihydrodipicolinate synthetase family PF553_01030 PF00596 Class II Aldolase and Adducin N-terminal domain PF553_01035 PF00392 Bacterial regulatory proteins, gntR family PF553_01035 PF00155 Aminotransferase class I and II PF553_01050 PF00665 Integrase core domain PF553_01075 PF13817 IS66 C-terminal element PF553_01075 PF03050 Transposase IS66 family PF553_01075 PF13005 zinc-finger binding domain of transposase IS66 PF553_01075 PF13007 Transposase C of IS166 homeodomain PF553_01085 PF00440 Bacterial regulatory proteins, tetR family PF553_01105 PF02678 Pirin PF553_01105 PF17954 Quercetinase C-terminal cupin domain PF553_01110 PF00291 Pyridoxal-phosphate dependent enzyme PF553_01115 PF13309 HTH domain PF553_01115 PF08348 YheO-like PAS domain PF553_01125 PF00501 AMP-binding enzyme PF553_01125 PF00668 Condensation domain PF553_01125 PF00550 Phosphopantetheine attachment site PF553_01125 PF13193 AMP-binding enzyme C-terminal domain PF553_01130 PF00501 AMP-binding enzyme PF553_01130 PF13193 AMP-binding enzyme C-terminal domain PF553_01130 PF00668 Condensation domain PF553_01130 PF00550 Phosphopantetheine attachment site PF553_01130 PF00975 Thioesterase domain PF553_01135 PF01032 FecCD transport family PF553_01140 PF01032 FecCD transport family PF553_01145 PF00005 ABC transporter PF553_01150 PF01497 Periplasmic binding protein PF553_01155 PF07715 TonB-dependent Receptor Plug Domain PF553_01155 PF00593 TonB dependent receptor PF553_01160 PF13434 L-lysine 6-monooxygenase (NADPH-requiring) PF553_01195 PF00672 HAMP domain PF553_01195 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PF553_01195 PF00512 His Kinase A (phospho-acceptor) domain PF553_01200 PF00486 Transcriptional regulatory protein, C terminal PF553_01200 PF00072 Response regulator receiver domain PF553_01210 PF07731 Multicopper oxidase PF553_01210 PF07732 Multicopper oxidase PF553_01210 PF00394 Multicopper oxidase PF553_01235 PF07664 Ferrous iron transport protein B C terminus PF553_01235 PF02421 Ferrous iron transport protein B PF553_01235 PF07670 Nucleoside recognition PF553_01250 PF13411 MerR HTH family regulatory protein PF553_01300 PF00543 Nitrogen regulatory protein P-II PF553_01305 PF00909 Ammonium Transporter Family PF553_01310 PF03477 ATP cone domain PF553_01315 PF01872 RibD C-terminal domain PF553_01315 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region PF553_01325 PF00677 Lumazine binding domain PF553_01345 PF00883 Cytosol aminopeptidase family, catalytic domain PF553_01345 PF02789 Cytosol aminopeptidase family, N-terminal domain PF553_01355 PF03739 Lipopolysaccharide export system permease LptF/LptG PF553_01360 PF06415 BPG-independent PGAM N-terminus (iPGM_N) PF553_01360 PF01676 Metalloenzyme superfamily PF553_01365 PF00595 PDZ domain PF553_01365 PF03572 Peptidase family S41 PF553_01370 PF00072 Response regulator receiver domain PF553_01370 PF02954 Bacterial regulatory protein, Fis family PF553_01370 PF00158 Sigma-54 interaction domain PF553_01375 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PF553_01375 PF00512 His Kinase A (phospho-acceptor) domain PF553_01380 PF00196 Bacterial regulatory proteins, luxR family PF553_01380 PF00072 Response regulator receiver domain PF553_01385 PF00768 D-alanyl-D-alanine carboxypeptidase PF553_01390 PF00291 Pyridoxal-phosphate dependent enzyme PF553_01395 PF01842 ACT domain PF553_01395 PF00742 Homoserine dehydrogenase PF553_01395 PF03447 Homoserine dehydrogenase, NAD binding domain PF553_01400 PF10411 Disulfide bond isomerase protein N-terminus PF553_01400 PF13098 Thioredoxin-like domain PF553_01405 PF00589 Phage integrase family PF553_01405 PF02899 Phage integrase, N-terminal SAM-like domain PF553_01415 PF02421 Ferrous iron transport protein B PF553_01415 PF07670 Nucleoside recognition PF553_01415 PF07664 Ferrous iron transport protein B C terminus PF553_01425 PF02875 Mur ligase family, glutamate ligase domain PF553_01425 PF08245 Mur ligase middle domain PF553_01430 PF01098 Cell cycle protein PF553_01435 PF00749 tRNA synthetases class I (E and Q), catalytic domain PF553_01440 PF01258 Prokaryotic dksA/traR C4-type zinc finger PF553_01445 PF00149 Calcineurin-like phosphoesterase PF553_01450 PF00293 NUDIX domain PF553_01455 PF01964 Radical SAM ThiC family PF553_01455 PF13667 ThiC-associated domain PF553_01470 PF00892 EamA-like transporter family PF553_01475 PF02321 Outer membrane efflux protein PF553_01480 PF01895 PhoU domain PF553_01485 PF04362 Bacterial Fe(2+) trafficking PF553_01490 PF14698 Argininosuccinate lyase C-terminal PF553_01490 PF00206 Lyase PF553_01495 PF07694 5TMR of 5TMR-LYT PF553_01495 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PF553_01495 PF06580 Histidine kinase PF553_01500 PF04397 LytTr DNA-binding domain PF553_01500 PF00072 Response regulator receiver domain PF553_01505 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain PF553_01505 PF03900 Porphobilinogen deaminase, C-terminal domain PF553_01530 PF00816 H-NS histone family PF553_01545 PF03958 Bacterial type II/III secretion system short domain PF553_01545 PF00263 Bacterial type II and III secretion system protein PF553_01550 PF12401 Protein of unknown function (DUF2662) PF553_01550 PF00498 FHA domain PF553_01555 PF13419 Haloacid dehalogenase-like hydrolase PF553_01560 PF04715 Anthranilate synthase component I, N terminal region PF553_01560 PF00425 chorismate binding enzyme PF553_01585 PF00009 Elongation factor Tu GTP binding domain PF553_01585 PF03144 Elongation factor Tu domain 2 PF553_01585 PF03143 Elongation factor Tu C-terminal domain PF553_01595 PF00584 SecE/Sec61-gamma subunits of protein translocation complex PF553_01600 PF02357 Transcription termination factor nusG PF553_01600 PF00467 KOW motif PF553_01605 PF00298 Ribosomal protein L11, RNA binding domain PF553_01605 PF03946 Ribosomal protein L11, N-terminal domain PF553_01610 PF00687 Ribosomal protein L1p/L10e family PF553_01615 PF00466 Ribosomal protein L10 PF553_01620 PF00542 Ribosomal protein L7/L12 C-terminal domain PF553_01620 PF16320 Ribosomal protein L7/L12 dimerisation domain PF553_01625 PF10385 RNA polymerase beta subunit external 1 domain PF553_01625 PF04565 RNA polymerase Rpb2, domain 3 PF553_01625 PF04561 RNA polymerase Rpb2, domain 2 PF553_01625 PF04563 RNA polymerase beta subunit PF553_01625 PF04560 RNA polymerase Rpb2, domain 7 PF553_01625 PF00562 RNA polymerase Rpb2, domain 6 PF553_01630 PF04998 RNA polymerase Rpb1, domain 5 PF553_01630 PF04997 RNA polymerase Rpb1, domain 1 PF553_01630 PF00623 RNA polymerase Rpb1, domain 2 PF553_01630 PF04983 RNA polymerase Rpb1, domain 3 PF553_01630 PF05000 RNA polymerase Rpb1, domain 4 PF553_01655 PF03553 Na+/H+ antiporter family PF553_01655 PF13726 Na+-H+ antiporter family PF553_01670 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PF553_01670 PF00183 Hsp90 protein PF553_01685 PF01323 DSBA-like thioredoxin domain PF553_01695 PF13411 MerR HTH family regulatory protein PF553_01715 PF00108 Thiolase, N-terminal domain PF553_01715 PF02803 Thiolase, C-terminal domain PF553_01720 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain PF553_01720 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain PF553_01720 PF00378 Enoyl-CoA hydratase/isomerase PF553_01735 PF01541 GIY-YIG catalytic domain PF553_01735 PF02151 UvrB/uvrC motif PF553_01735 PF08459 UvrC Helix-hairpin-helix N-terminal PF553_01745 PF01066 CDP-alcohol phosphatidyltransferase PF553_01750 PF12833 Helix-turn-helix domain PF553_01750 PF02805 Metal binding domain of Ada PF553_01750 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain PF553_01750 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain PF553_01775 PF13533 Biotin-lipoyl like PF553_01780 PF03652 Holliday junction resolvase PF553_01785 PF02622 Uncharacterized ACR, COG1678 PF553_01790 PF02463 RecF/RecN/SMC N terminal domain PF553_01800 PF06865 Pyrimidine/purine nucleoside phosphorylase PF553_01805 PF00588 SpoU rRNA Methylase family PF553_01805 PF08032 RNA 2'-O ribose methyltransferase substrate binding PF553_01815 PF01121 Dephospho-CoA kinase PF553_01820 PF06750 Bacterial Peptidase A24 N-terminal domain PF553_01820 PF01478 Type IV leader peptidase family PF553_01825 PF00482 Type II secretion system (T2SS), protein F PF553_01830 PF00437 Type II/IV secretion system protein PF553_01830 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain PF553_01835 PF00121 Triosephosphate isomerase PF553_01840 PF03840 Preprotein translocase SecG subunit PF553_01860 PF02576 RimP N-terminal domain PF553_01860 PF17384 RimP C-terminal SH3 domain PF553_01865 PF13184 NusA-like KH domain PF553_01865 PF08529 NusA N-terminal domain PF553_01865 PF00575 S1 RNA binding domain PF553_01870 PF08364 Bacterial translation initiation factor IF-2 associated region PF553_01870 PF04760 Translation initiation factor IF-2, N-terminal region PF553_01870 PF11987 Translation-initiation factor 2 PF553_01870 PF00009 Elongation factor Tu GTP binding domain PF553_01875 PF02033 Ribosome-binding factor A PF553_01880 PF03334 Na+/H+ antiporter subunit PF553_01885 PF04066 Multiple resistance and pH regulation protein F (MrpF / PhaF) PF553_01890 PF01899 Na+/H+ ion antiporter subunit PF553_01895 PF00361 Proton-conducting membrane transporter PF553_01900 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L PF553_01905 PF04039 Domain related to MnhB subunit of Na+/H+ antiporter PF553_01905 PF13244 Domain of unknown function (DUF4040) PF553_01905 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus PF553_01905 PF00361 Proton-conducting membrane transporter PF553_01920 PF01502 Phosphoribosyl-AMP cyclohydrolase PF553_01925 PF01494 FAD binding domain PF553_01930 PF03109 ABC1 family PF553_01940 PF01209 ubiE/COQ5 methyltransferase family PF553_01950 PF03976 Polyphosphate kinase 2 (PPK2) PF553_01960 PF17946 RecC C-terminal domain PF553_01965 PF13361 UvrD-like helicase C-terminal domain PF553_01965 PF00580 UvrD/REP helicase N-terminal domain PF553_01965 PF12705 PD-(D/E)XK nuclease superfamily PF553_01970 PF13538 UvrD-like helicase C-terminal domain PF553_01975 PF00144 Beta-lactamase PF553_01980 PF00312 Ribosomal protein S15 PF553_01985 PF00013 KH domain PF553_01985 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain PF553_01985 PF01138 3' exoribonuclease family, domain 1 PF553_01985 PF00575 S1 RNA binding domain PF553_01985 PF03725 3' exoribonuclease family, domain 2 PF553_01990 PF01544 CorA-like Mg2+ transporter protein PF553_02000 PF01556 DnaJ C terminal domain PF553_02000 PF00226 DnaJ domain PF553_02010 PF01430 Hsp33 protein PF553_02015 PF00999 Sodium/hydrogen exchanger family PF553_02015 PF02254 TrkA-N domain PF553_02020 PF00271 Helicase conserved C-terminal domain PF553_02020 PF00270 DEAD/DEAH box helicase PF553_02020 PF18074 Primosomal protein N C-terminal domain PF553_02020 PF18319 PriA DNA helicase Cys-rich region (CRR) domain PF553_02020 PF17764 3′ DNA-binding domain (3′BD) PF553_02025 PF00482 Type II secretion system (T2SS), protein F PF553_02030 PF08334 Type II secretion system (T2SS), protein G PF553_02030 PF07963 Prokaryotic N-terminal methylation motif PF553_02040 PF01588 Putative tRNA binding domain PF553_02045 PF00795 Carbon-nitrogen hydrolase PF553_02050 PF00571 CBS domain PF553_02050 PF03471 Transporter associated domain PF553_02055 PF01206 Sulfurtransferase TusA PF553_02075 PF01177 Asp/Glu/Hydantoin racemase PF553_02085 PF00762 Ferrochelatase PF553_02090 PF00753 Metallo-beta-lactamase superfamily PF553_02095 PF03884 DNA gyrase inhibitor YacG PF553_02105 PF13247 4Fe-4S dicluster domain PF553_02105 PF07992 Pyridine nucleotide-disulphide oxidoreductase PF553_02105 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster PF553_02115 PF02537 CrcB-like protein, Camphor Resistance (CrcB) PF553_02140 PF03050 Transposase IS66 family PF553_02140 PF13007 Transposase C of IS166 homeodomain PF553_02140 PF13005 zinc-finger binding domain of transposase IS66 PF553_02140 PF13817 IS66 C-terminal element PF553_02150 PF13817 IS66 C-terminal element PF553_02150 PF13007 Transposase C of IS166 homeodomain PF553_02150 PF13005 zinc-finger binding domain of transposase IS66 PF553_02150 PF03050 Transposase IS66 family PF553_02170 PF03109 ABC1 family PF553_02175 PF02771 Acyl-CoA dehydrogenase, N-terminal domain PF553_02175 PF08028 Acyl-CoA dehydrogenase, C-terminal domain PF553_02180 PF08028 Acyl-CoA dehydrogenase, C-terminal domain PF553_02180 PF02771 Acyl-CoA dehydrogenase, N-terminal domain PF553_02180 PF02770 Acyl-CoA dehydrogenase, middle domain PF553_02185 PF01554 MatE PF553_02195 PF04055 Radical SAM superfamily PF553_02195 PF06969 HemN C-terminal domain PF553_02215 PF13817 IS66 C-terminal element PF553_02215 PF03050 Transposase IS66 family PF553_02215 PF13007 Transposase C of IS166 homeodomain PF553_02215 PF13005 zinc-finger binding domain of transposase IS66 PF553_02225 PF03466 LysR substrate binding domain PF553_02225 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family PF553_02240 PF13193 AMP-binding enzyme C-terminal domain PF553_02240 PF00501 AMP-binding enzyme PF553_02245 PF00575 S1 RNA binding domain PF553_02245 PF10150 Ribonuclease E/G family PF553_02245 PF12111 Polyribonucleotide phosphorylase C terminal PF553_02250 PF00849 RNA pseudouridylate synthase PF553_02250 PF01479 S4 domain PF553_02255 PF13419 Haloacid dehalogenase-like hydrolase PF553_02260 PF13280 WYL domain PF553_02260 PF08279 HTH domain PF553_02265 PF02798 Glutathione S-transferase, N-terminal domain PF553_02275 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family PF553_02275 PF03466 LysR substrate binding domain PF553_02280 PF12706 Beta-lactamase superfamily domain PF553_02285 PF00141 Peroxidase PF553_02290 PF01590 GAF domain PF553_02290 PF02896 PEP-utilising enzyme, TIM barrel domain PF553_02290 PF00391 PEP-utilising enzyme, mobile domain PF553_02290 PF05524 PEP-utilising enzyme, N-terminal PF553_02295 PF00293 NUDIX domain PF553_02315 PF03466 LysR substrate binding domain PF553_02315 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family PF553_02325 PF00330 Aconitase family (aconitate hydratase) PF553_02330 PF00694 Aconitase C-terminal domain PF553_02340 PF00180 Isocitrate/isopropylmalate dehydrogenase PF553_02355 PF01176 Translation initiation factor 1A / IF-1 PF553_02365 PF01416 tRNA pseudouridine synthase PF553_02385 PF02774 Semialdehyde dehydrogenase, dimerisation domain PF553_02385 PF01118 Semialdehyde dehydrogenase, NAD binding domain PF553_02395 PF00375 Sodium:dicarboxylate symporter family PF553_02405 PF03279 Bacterial lipid A biosynthesis acyltransferase PF553_02410 PF01810 LysE type translocator PF553_02415 PF12848 ABC transporter PF553_02415 PF16326 ABC transporter C-terminal domain PF553_02415 PF00005 ABC transporter PF553_02420 PF04102 SlyX PF553_02425 PF00107 Zinc-binding dehydrogenase PF553_02425 PF08240 Alcohol dehydrogenase GroES-like domain PF553_02430 PF01638 HxlR-like helix-turn-helix PF553_02440 PF01131 DNA topoisomerase PF553_02440 PF08272 Topoisomerase I zinc-ribbon-like PF553_02440 PF01751 Toprim domain PF553_02440 PF01396 Topoisomerase DNA binding C4 zinc finger PF553_02455 PF00580 UvrD/REP helicase N-terminal domain PF553_02455 PF13361 UvrD-like helicase C-terminal domain PF553_02460 PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) PF553_02480 PF00999 Sodium/hydrogen exchanger family PF553_02480 PF02254 TrkA-N domain PF553_02485 PF00471 Ribosomal protein L33 PF553_02490 PF00830 Ribosomal L28 family PF553_02495 PF00171 Aldehyde dehydrogenase family PF553_02505 PF01842 ACT domain PF553_02505 PF00551 Formyl transferase PF553_02515 PF01618 MotA/TolQ/ExbB proton channel family PF553_02525 PF01625 Peptide methionine sulfoxide reductase PF553_02535 PF00186 Dihydrofolate reductase PF553_02540 PF00303 Thymidylate synthase PF553_02555 PF01790 Prolipoprotein diacylglyceryl transferase PF553_02575 PF00902 Sec-independent protein translocase protein (TatC) PF553_02580 PF02416 mttA/Hcf106 family PF553_02585 PF02416 mttA/Hcf106 family PF553_02595 PF01725 Ham1 family PF553_02605 PF00561 alpha/beta hydrolase fold PF553_02605 PF07021 Methionine biosynthesis protein MetW PF553_02610 PF00561 alpha/beta hydrolase fold PF553_02615 PF00682 HMGL-like PF553_02615 PF08502 LeuA allosteric (dimerisation) domain PF553_02620 PF13640 2OG-Fe(II) oxygenase superfamily PF553_02620 PF18331 PKHD-type hydroxylase C-terminal domain PF553_02625 PF00593 TonB dependent receptor PF553_02625 PF07715 TonB-dependent Receptor Plug Domain PF553_02630 PF05698 Bacterial trigger factor protein (TF) C-terminus PF553_02630 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase PF553_02630 PF05697 Bacterial trigger factor protein (TF) PF553_02635 PF00574 Clp protease PF553_02640 PF07724 AAA domain (Cdc48 subfamily) PF553_02640 PF10431 C-terminal, D2-small domain, of ClpB protein PF553_02640 PF06689 ClpX C4-type zinc finger PF553_02655 PF05681 Fumarate hydratase (Fumerase) PF553_02655 PF05683 Fumarase C-terminus PF553_02660 PF07085 DRTGG domain PF553_02660 PF01515 Phosphate acetyl/butaryl transferase PF553_02665 PF00871 Acetokinase family PF553_02670 PF00920 Dehydratase family PF553_02675 PF01081 KDPG and KHG aldolase PF553_02680 PF02447 GntP family permease PF553_02685 PF01202 Shikimate kinase PF553_02690 PF00171 Aldehyde dehydrogenase family PF553_02695 PF00171 Aldehyde dehydrogenase family PF553_02700 PF00561 alpha/beta hydrolase fold PF553_02710 PF00933 Glycosyl hydrolase family 3 N terminal domain PF553_02715 PF17804 Tail specific protease N-terminal domain PF553_02715 PF03572 Peptidase family S41 PF553_02715 PF11818 C-terminal domain of tail specific protease (DUF3340) PF553_02715 PF00595 PDZ domain PF553_02720 PF13439 Glycosyltransferase Family 4 PF553_02720 PF00534 Glycosyl transferases group 1 PF553_02725 PF01569 PAP2 superfamily PF553_02730 PF04384 Iron-sulphur cluster assembly PF553_02735 PF00334 Nucleoside diphosphate kinase PF553_02740 PF04055 Radical SAM superfamily PF553_02750 PF13464 Domain of unknown function (DUF4115) PF553_02755 PF04551 GcpE protein PF553_02760 PF13393 Histidyl-tRNA synthetase PF553_02760 PF03129 Anticodon binding domain PF553_02770 PF13360 PQQ-like domain PF553_02775 PF01926 50S ribosome-binding GTPase PF553_02775 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal PF553_02785 PF02556 Preprotein translocase subunit SecB PF553_02790 PF00462 Glutaredoxin PF553_02800 PF03193 RsgA GTPase PF553_02805 PF00929 Exonuclease PF553_02820 PF02321 Outer membrane efflux protein PF553_02825 PF12704 MacB-like periplasmic core domain PF553_02825 PF02687 FtsX-like permease family PF553_02825 PF00005 ABC transporter PF553_02830 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion PF553_02845 PF09334 tRNA synthetases class I (M) PF553_02845 PF13603 Leucyl-tRNA synthetase, Domain 2 PF553_02845 PF00133 tRNA synthetases class I (I, L, M and V) PF553_02845 PF08264 Anticodon-binding domain of tRNA PF553_02855 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain PF553_02855 PF00205 Thiamine pyrophosphate enzyme, central domain PF553_02855 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain PF553_02860 PF10369 Small subunit of acetolactate synthase PF553_02865 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain PF553_02865 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain PF553_02890 PF00009 Elongation factor Tu GTP binding domain PF553_02890 PF03144 Elongation factor Tu domain 2 PF553_02890 PF16658 Class II release factor RF3, C-terminal domain PF553_02905 PF01026 TatD related DNase PF553_02910 PF00330 Aconitase family (aconitate hydratase) PF553_02910 PF00694 Aconitase C-terminal domain PF553_02915 PF00899 ThiF family PF553_02925 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family PF553_02925 PF03466 LysR substrate binding domain PF553_02935 PF01207 Dihydrouridine synthase (Dus) PF553_02940 PF07690 Major Facilitator Superfamily PF553_02950 PF00892 EamA-like transporter family PF553_02955 PF01262 Alanine dehydrogenase/PNT, C-terminal domain PF553_02955 PF05222 Alanine dehydrogenase/PNT, N-terminal domain PF553_02960 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch PF553_02965 PF02233 NAD(P) transhydrogenase beta subunit PF553_02970 PF00106 short chain dehydrogenase PF553_02980 PF01261 Xylose isomerase-like TIM barrel PF553_02985 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase PF553_02985 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase PF553_02990 PF00378 Enoyl-CoA hydratase/isomerase PF553_02995 PF00672 HAMP domain PF553_02995 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PF553_02995 PF00512 His Kinase A (phospho-acceptor) domain PF553_02995 PF01627 Hpt domain PF553_02995 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) PF553_02995 PF00072 Response regulator receiver domain PF553_03000 PF00291 Pyridoxal-phosphate dependent enzyme PF553_03010 PF05958 tRNA (Uracil-5-)-methyltransferase PF553_03015 PF13291 ACT domain PF553_03015 PF04607 Region found in RelA / SpoT proteins PF553_03015 PF02824 TGS domain PF553_03025 PF03819 MazG nucleotide pyrophosphohydrolase domain PF553_03035 PF01743 Poly A polymerase head domain PF553_03035 PF12626 Polymerase A arginine-rich C-terminus PF553_03035 PF12627 Probable RNA and SrmB- binding site of polymerase A PF553_03040 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) PF553_03045 PF02548 Ketopantoate hydroxymethyltransferase PF553_03050 PF02569 Pantoate-beta-alanine ligase PF553_03055 PF03668 P-loop ATPase protein family PF553_03060 PF00381 PTS HPr component phosphorylation site PF553_03065 PF04751 Protein of unknown function (DUF615) PF553_03070 PF00501 AMP-binding enzyme PF553_03070 PF13193 AMP-binding enzyme C-terminal domain PF553_03075 PF03129 Anticodon binding domain PF553_03075 PF02824 TGS domain PF553_03075 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) PF553_03075 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain PF553_03080 PF00707 Translation initiation factor IF-3, C-terminal domain PF553_03080 PF05198 Translation initiation factor IF-3, N-terminal domain PF553_03085 PF02798 Glutathione S-transferase, N-terminal domain PF553_03085 PF00043 Glutathione S-transferase, C-terminal domain PF553_03090 PF09335 SNARE associated Golgi protein PF553_03095 PF07690 Major Facilitator Superfamily PF553_03105 PF01632 Ribosomal protein L35 PF553_03110 PF00453 Ribosomal protein L20 PF553_03130 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain PF553_03130 PF01409 tRNA synthetases class II core domain (F) PF553_03135 PF03483 B3/4 domain PF553_03135 PF03484 tRNA synthetase B5 domain PF553_03135 PF03147 Ferredoxin-fold anticodon binding domain PF553_03135 PF01588 Putative tRNA binding domain PF553_03135 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain PF553_03140 PF00216 Bacterial DNA-binding protein PF553_03155 PF07497 Rho termination factor, RNA-binding domain PF553_03155 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain PF553_03155 PF07498 Rho termination factor, N-terminal domain PF553_03160 PF00085 Thioredoxin PF553_03165 PF02541 Ppx/GppA phosphatase family PF553_03170 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit PF553_03175 PF11734 TilS substrate C-terminal domain PF553_03175 PF09179 TilS substrate binding domain PF553_03175 PF01171 PP-loop family PF553_03180 PF03807 NADP oxidoreductase coenzyme F420-dependent PF553_03180 PF14748 Pyrroline-5-carboxylate reductase dimerisation PF553_03185 PF02325 YGGT family PF553_03190 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain PF553_03190 PF01367 5'-3' exonuclease, C-terminal SAM fold PF553_03190 PF01612 3'-5' exonuclease PF553_03190 PF00476 DNA polymerase family A PF553_03210 PF00437 Type II/IV secretion system protein PF553_03215 PF02566 OsmC-like protein PF553_03220 PF01047 MarR family PF553_03230 PF00795 Carbon-nitrogen hydrolase PF553_03275 PF00309 Sigma-54 factor, Activator interacting domain (AID) PF553_03275 PF04963 Sigma-54 factor, core binding domain PF553_03275 PF04552 Sigma-54, DNA binding domain PF553_03280 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein PF553_03285 PF01722 BolA-like protein PF553_03290 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) PF553_03295 PF01634 ATP phosphoribosyltransferase PF553_03300 PF00815 Histidinol dehydrogenase PF553_03305 PF00155 Aminotransferase class I and II PF553_03310 PF04715 Anthranilate synthase component I, N terminal region PF553_03310 PF00425 chorismate binding enzyme PF553_03350 PF13817 IS66 C-terminal element PF553_03350 PF13007 Transposase C of IS166 homeodomain PF553_03350 PF13005 zinc-finger binding domain of transposase IS66 PF553_03350 PF03050 Transposase IS66 family PF553_03370 PF00293 NUDIX domain PF553_03375 PF00132 Bacterial transferase hexapeptide (six repeats) PF553_03380 PF00814 Glycoprotease family PF553_03385 PF04445 Putative SAM-dependent methyltransferase PF553_03395 PF00756 Putative esterase PF553_03405 PF00834 Ribulose-phosphate 3 epimerase family PF553_03420 PF07732 Multicopper oxidase PF553_03420 PF07731 Multicopper oxidase PF553_03420 PF00394 Multicopper oxidase PF553_03435 PF00893 Small Multidrug Resistance protein PF553_03440 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain PF553_03440 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain PF553_03445 PF01960 ArgJ family PF553_03450 PF02445 Quinolinate synthetase A protein PF553_03475 PF00962 Adenosine/AMP deaminase PF553_03480 PF08240 Alcohol dehydrogenase GroES-like domain PF553_03480 PF00107 Zinc-binding dehydrogenase PF553_03485 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family PF553_03485 PF03466 LysR substrate binding domain PF553_03490 PF00441 Acyl-CoA dehydrogenase, C-terminal domain PF553_03490 PF02770 Acyl-CoA dehydrogenase, middle domain PF553_03490 PF02771 Acyl-CoA dehydrogenase, N-terminal domain PF553_03495 PF07690 Major Facilitator Superfamily PF553_03500 PF02515 CoA-transferase family III PF553_03505 PF17932 Tetracyclin repressor-like, C-terminal domain PF553_03505 PF00440 Bacterial regulatory proteins, tetR family PF553_03520 PF14537 Cytochrome c3 PF553_03520 PF00890 FAD binding domain PF553_03525 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family PF553_03525 PF03466 LysR substrate binding domain PF553_03535 PF07690 Major Facilitator Superfamily PF553_03540 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family PF553_03540 PF03466 LysR substrate binding domain PF553_03545 PF01810 LysE type translocator PF553_03550 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family PF553_03550 PF03466 LysR substrate binding domain PF553_03560 PF08267 Cobalamin-independent synthase, N-terminal domain PF553_03560 PF01717 Cobalamin-independent synthase, Catalytic domain PF553_03565 PF01613 Flavin reductase like domain PF553_03600 PF17074 Darcynin, domain of unknown function PF553_03615 PF00268 Ribonucleotide reductase, small chain PF553_03625 PF03477 ATP cone domain PF553_03625 PF00317 Ribonucleotide reductase, all-alpha domain PF553_03625 PF02867 Ribonucleotide reductase, barrel domain PF553_03635 PF00072 Response regulator receiver domain PF553_03635 PF00486 Transcriptional regulatory protein, C terminal PF553_03640 PF00672 HAMP domain PF553_03640 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PF553_03640 PF00512 His Kinase A (phospho-acceptor) domain PF553_03650 PF17158 Membrane-associated sensor, integral membrane domain PF553_03650 PF00990 Diguanylate cyclase, GGDEF domain PF553_03655 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 PF553_03660 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit PF553_03665 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit PF553_03665 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit PF553_03675 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region PF553_03675 PF10531 SLBB domain PF553_03675 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit PF553_03680 PF04879 Molybdopterin oxidoreductase Fe4S4 domain PF553_03680 PF00384 Molybdopterin oxidoreductase PF553_03680 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region PF553_03685 PF00146 NADH dehydrogenase PF553_03690 PF12838 4Fe-4S dicluster domain PF553_03695 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 PF553_03700 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L PF553_03705 PF00361 Proton-conducting membrane transporter PF553_03705 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus PF553_03710 PF00361 Proton-conducting membrane transporter PF553_03715 PF00361 Proton-conducting membrane transporter PF553_03725 PF00313 'Cold-shock' DNA-binding domain PF553_03735 PF03466 LysR substrate binding domain PF553_03735 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family PF553_03740 PF00970 Oxidoreductase FAD-binding domain PF553_03740 PF00175 Oxidoreductase NAD-binding domain PF553_03755 PF05552 Conserved TM helix PF553_03770 PF00291 Pyridoxal-phosphate dependent enzyme PF553_03775 PF13533 Biotin-lipoyl like PF553_03800 PF09334 tRNA synthetases class I (M) PF553_03800 PF01588 Putative tRNA binding domain PF553_03810 PF10609 NUBPL iron-transfer P-loop NTPase PF553_03815 PF01048 Phosphorylase superfamily PF553_03830 PF00692 dUTPase PF553_03860 PF01207 Dihydrouridine synthase (Dus) PF553_03870 PF00448 SRP54-type protein, GTPase domain PF553_03870 PF02881 SRP54-type protein, helical bundle domain PF553_03870 PF02978 Signal peptide binding domain PF553_03875 PF03309 Type III pantothenate kinase PF553_03885 PF01925 Sulfite exporter TauE/SafE PF553_03895 PF06470 SMC proteins Flexible Hinge Domain PF553_03895 PF02463 RecF/RecN/SMC N terminal domain PF553_03905 PF12826 Helix-hairpin-helix motif PF553_03905 PF00533 BRCA1 C Terminus (BRCT) domain PF553_03905 PF03120 NAD-dependent DNA ligase OB-fold domain PF553_03905 PF01653 NAD-dependent DNA ligase adenylation domain PF553_03905 PF03119 NAD-dependent DNA ligase C4 zinc finger domain PF553_03910 PF00210 Ferritin-like domain PF553_03915 PF07690 Major Facilitator Superfamily PF553_03920 PF00982 Glycosyltransferase family 20 PF553_03925 PF02358 Trehalose-phosphatase PF553_03930 PF12697 Alpha/beta hydrolase family PF553_03930 PF08241 Methyltransferase domain PF553_03935 PF00202 Aminotransferase class-III PF553_03935 PF06968 Biotin and Thiamin Synthesis associated domain PF553_03935 PF04055 Radical SAM superfamily PF553_03940 PF00155 Aminotransferase class I and II PF553_03955 PF00849 RNA pseudouridylate synthase PF553_03955 PF01479 S4 domain PF553_03960 PF04079 Segregation and condensation complex subunit ScpB PF553_03965 PF02616 Segregation and condensation protein ScpA PF553_03970 PF01300 Telomere recombination PF553_03975 PF04315 Elongation factor P hydroxylase PF553_03980 PF02620 Large ribosomal RNA subunit accumulation protein YceD PF553_03985 PF01783 Ribosomal L32p protein family PF553_03990 PF00698 Acyl transferase domain PF553_04000 PF00550 Phosphopantetheine attachment site PF553_04005 PF04972 BON domain PF553_04005 PF01476 LysM domain PF553_04010 PF02581 Thiamine monophosphate synthase PF553_04010 PF03070 TENA/THI-4/PQQC family PF553_04010 PF08543 Phosphomethylpyrimidine kinase PF553_04020 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase PF553_04035 PF02261 Aspartate decarboxylase PF553_04040 PF01195 Peptidyl-tRNA hydrolase PF553_04045 PF01386 Ribosomal L25p family PF553_04050 PF14572 Phosphoribosyl synthetase-associated domain PF553_04050 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase PF553_04075 PF08544 GHMP kinases C terminal PF553_04075 PF00288 GHMP kinases N terminal domain PF553_04080 PF03550 Outer membrane lipoprotein LolB PF553_04090 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain PF553_04090 PF01488 Shikimate / quinate 5-dehydrogenase PF553_04090 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain PF553_04095 PF10410 DnaB-helicase binding domain of primase PF553_04095 PF08278 DNA primase DnaG DnaB-binding PF553_04095 PF08275 DNA primase catalytic core, N-terminal domain PF553_04095 PF01807 CHC2 zinc finger PF553_04100 PF13525 Outer membrane lipoprotein PF553_04105 PF00849 RNA pseudouridylate synthase PF553_04105 PF01479 S4 domain PF553_04110 PF02578 Multi-copper polyphenol oxidoreductase laccase PF553_04115 PF03358 NADPH-dependent FMN reductase PF553_04120 PF01668 SmpB protein PF553_04125 PF01467 Cytidylyltransferase-like PF553_04130 PF00037 4Fe-4S binding domain PF553_04150 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family PF553_04150 PF03466 LysR substrate binding domain PF553_04155 PF00180 Isocitrate/isopropylmalate dehydrogenase PF553_04160 PF02028 BCCT, betaine/carnitine/choline family transporter PF553_04165 PF07859 alpha/beta hydrolase fold PF553_04170 PF00355 Rieske [2Fe-2S] domain PF553_04170 PF00848 Ring hydroxylating alpha subunit (catalytic domain) PF553_04175 PF00171 Aldehyde dehydrogenase family PF553_04180 PF00970 Oxidoreductase FAD-binding domain PF553_04180 PF00111 2Fe-2S iron-sulfur cluster binding domain PF553_04180 PF00175 Oxidoreductase NAD-binding domain PF553_04195 PF00795 Carbon-nitrogen hydrolase PF553_04195 PF02540 NAD synthase PF553_04205 PF02678 Pirin PF553_04205 PF05726 Pirin C-terminal cupin domain PF553_04210 PF03653 Uncharacterised protein family (UPF0093) PF553_04215 PF00109 Beta-ketoacyl synthase, N-terminal domain PF553_04215 PF02801 Beta-ketoacyl synthase, C-terminal domain PF553_04225 PF00164 Ribosomal protein S12/S23 PF553_04230 PF00177 Ribosomal protein S7p/S5e PF553_04235 PF14492 Elongation Factor G, domain II PF553_04235 PF03764 Elongation factor G, domain IV PF553_04235 PF00009 Elongation factor Tu GTP binding domain PF553_04235 PF03144 Elongation factor Tu domain 2 PF553_04235 PF00679 Elongation factor G C-terminus PF553_04240 PF03143 Elongation factor Tu C-terminal domain PF553_04240 PF03144 Elongation factor Tu domain 2 PF553_04240 PF00009 Elongation factor Tu GTP binding domain PF553_04255 PF00583 Acetyltransferase (GNAT) family PF553_04260 PF04376 Arginine-tRNA-protein transferase, N terminus PF553_04260 PF04377 Arginine-tRNA-protein transferase, C terminus PF553_04265 PF03588 Leucyl/phenylalanyl-tRNA protein transferase PF553_04270 PF07992 Pyridine nucleotide-disulphide oxidoreductase PF553_04275 PF17854 FtsK alpha domain PF553_04275 PF09397 Ftsk gamma domain PF553_04275 PF01580 FtsK/SpoIIIE family PF553_04275 PF13491 4TM region of DNA translocase FtsK/SpoIIIE PF553_04280 PF01810 LysE type translocator PF553_04290 PF03776 Septum formation topological specificity factor MinE PF553_04295 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain PF553_04300 PF03775 Septum formation inhibitor MinC, C-terminal domain PF553_04310 PF01553 Acyltransferase PF553_04315 PF13488 Glycine zipper PF553_04315 PF00691 OmpA family PF553_04320 PF00580 UvrD/REP helicase N-terminal domain PF553_04320 PF13361 UvrD-like helicase C-terminal domain PF553_04325 PF00692 dUTPase PF553_04330 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I PF553_04330 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II PF553_04330 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III PF553_04330 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain PF553_04335 PF00696 Amino acid kinase family PF553_04345 PF13230 Glutamine amidotransferases class-II PF553_04350 PF01814 Hemerythrin HHE cation binding domain PF553_04360 PF03658 RnfH family Ubiquitin PF553_04365 PF04355 SmpA / OmlA family PF553_04370 PF01475 Ferric uptake regulator family PF553_04375 PF00437 Type II/IV secretion system protein PF553_04380 PF00437 Type II/IV secretion system protein PF553_04385 PF01168 Alanine racemase, N-terminal domain PF553_04395 PF12320 Type 5 capsule protein repressor C-terminal domain PF553_04395 PF00149 Calcineurin-like phosphoesterase PF553_04415 PF01370 NAD dependent epimerase/dehydratase family PF553_04415 PF08338 Domain of unknown function (DUF1731) PF553_04420 PF01266 FAD dependent oxidoreductase PF553_04425 PF00490 Delta-aminolevulinic acid dehydratase PF553_04430 PF03061 Thioesterase superfamily PF553_04435 PF13533 Biotin-lipoyl like PF553_04440 PF07690 Major Facilitator Superfamily PF553_04515 PF00929 Exonuclease PF553_04550 PF01381 Helix-turn-helix PF553_04550 PF00717 Peptidase S24-like PF553_04595 PF00145 C-5 cytosine-specific DNA methylase PF553_04605 PF01695 IstB-like ATP binding protein PF553_04675 PF07007 Lysozyme inhibitor LprI PF553_04840 PF02768 DNA polymerase III beta subunit, C-terminal domain PF553_04840 PF00712 DNA polymerase III beta subunit, N-terminal domain PF553_04840 PF02767 DNA polymerase III beta subunit, central domain PF553_04905 PF13737 Transposase DDE domain PF553_04915 PF13356 Arm DNA-binding domain PF553_04915 PF00589 Phage integrase family PF553_04960 PF00436 Single-strand binding protein family PF553_05000 PF13817 IS66 C-terminal element PF553_05000 PF13005 zinc-finger binding domain of transposase IS66 PF553_05000 PF13007 Transposase C of IS166 homeodomain PF553_05000 PF03050 Transposase IS66 family PF553_05015 PF02384 N-6 DNA Methylase PF553_05030 PF11867 Domain of unknown function (DUF3387) PF553_05030 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) PF553_05030 PF18766 SWI2/SNF2 ATPase PF553_05040 PF13007 Transposase C of IS166 homeodomain PF553_05040 PF03050 Transposase IS66 family PF553_05040 PF13817 IS66 C-terminal element PF553_05040 PF13005 zinc-finger binding domain of transposase IS66 PF553_05065 PF03050 Transposase IS66 family PF553_05065 PF13817 IS66 C-terminal element PF553_05065 PF13007 Transposase C of IS166 homeodomain PF553_05065 PF13005 zinc-finger binding domain of transposase IS66 PF553_05070 PF12161 HsdM N-terminal domain PF553_05070 PF02384 N-6 DNA Methylase PF553_05100 PF00083 Sugar (and other) transporter PF553_05160 PF13520 Amino acid permease PF553_05165 PF02574 Homocysteine S-methyltransferase PF553_05175 PF06039 Malate:quinone oxidoreductase (Mqo) PF553_05190 PF13007 Transposase C of IS166 homeodomain PF553_05190 PF13005 zinc-finger binding domain of transposase IS66 PF553_05190 PF03050 Transposase IS66 family PF553_05190 PF13817 IS66 C-terminal element PF553_05195 PF05199 GMC oxidoreductase PF553_05195 PF00732 GMC oxidoreductase PF553_05200 PF00171 Aldehyde dehydrogenase family PF553_05205 PF13977 BetI-type transcriptional repressor, C-terminal PF553_05205 PF00440 Bacterial regulatory proteins, tetR family PF553_05210 PF02028 BCCT, betaine/carnitine/choline family transporter PF553_05215 PF02028 BCCT, betaine/carnitine/choline family transporter PF553_05225 PF03061 Thioesterase superfamily PF553_05235 PF02492 CobW/HypB/UreG, nucleotide-binding domain PF553_05235 PF07683 Cobalamin synthesis protein cobW C-terminal domain PF553_05240 PF00375 Sodium:dicarboxylate symporter family PF553_05245 PF07152 YaeQ protein PF553_05250 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase PF553_05255 PF14883 Hypothetical glycosyl hydrolase family 13 PF553_05255 PF01522 Polysaccharide deacetylase PF553_05260 PF00535 Glycosyl transferase family 2 PF553_05270 PF00378 Enoyl-CoA hydratase/isomerase PF553_05285 PF09339 IclR helix-turn-helix domain PF553_05285 PF01614 Bacterial transcriptional regulator PF553_05290 PF00355 Rieske [2Fe-2S] domain PF553_05300 PF00355 Rieske [2Fe-2S] domain PF553_05310 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily PF553_05315 PF07992 Pyridine nucleotide-disulphide oxidoreductase PF553_05315 PF14759 Reductase C-terminal PF553_05320 PF07690 Major Facilitator Superfamily PF553_05330 PF12697 Alpha/beta hydrolase family PF553_05340 PF03447 Homoserine dehydrogenase, NAD binding domain PF553_05340 PF01958 Domain of unknown function DUF108 PF553_05345 PF00171 Aldehyde dehydrogenase family PF553_05350 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain PF553_05350 PF00205 Thiamine pyrophosphate enzyme, central domain PF553_05350 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain PF553_05360 PF07690 Major Facilitator Superfamily PF553_05365 PF01327 Polypeptide deformylase PF553_05370 PF04960 Glutaminase PF553_05375 PF02311 AraC-like ligand binding domain PF553_05375 PF12833 Helix-turn-helix domain PF553_05380 PF07690 Major Facilitator Superfamily PF553_05385 PF01263 Aldose 1-epimerase PF553_05395 PF03466 LysR substrate binding domain PF553_05395 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family PF553_05405 PF07690 Major Facilitator Superfamily PF553_05410 PF00456 Transketolase, thiamine diphosphate binding domain PF553_05415 PF02779 Transketolase, pyrimidine binding domain PF553_05415 PF02780 Transketolase, C-terminal domain PF553_05420 PF02965 Vitamin B12 dependent methionine synthase, activation domain PF553_05420 PF02310 B12 binding domain PF553_05420 PF02607 B12 binding domain PF553_05420 PF02574 Homocysteine S-methyltransferase PF553_05420 PF00809 Pterin binding enzyme PF553_05425 PF01384 Phosphate transporter family PF553_05430 PF00291 Pyridoxal-phosphate dependent enzyme PF553_05445 PF03781 Sulfatase-modifying factor enzyme 1 PF553_05450 PF00884 Sulfatase PF553_05460 PF01521 Iron-sulphur cluster biosynthesis PF553_05460 PF01106 NifU-like domain PF553_05470 PF07715 TonB-dependent Receptor Plug Domain PF553_05470 PF00593 TonB dependent receptor PF553_05480 PF00561 alpha/beta hydrolase fold PF553_05485 PF00484 Carbonic anhydrase PF553_05490 PF13472 GDSL-like Lipase/Acylhydrolase family PF553_05495 PF00005 ABC transporter PF553_05505 PF01694 Rhomboid family PF553_05510 PF00912 Transglycosylase PF553_05515 PF13089 Polyphosphate kinase N-terminal domain PF553_05515 PF17941 Polyphosphate kinase C-terminal domain 1 PF553_05515 PF13090 Polyphosphate kinase C-terminal domain 2 PF553_05515 PF02503 Polyphosphate kinase middle domain PF553_05530 PF03466 LysR substrate binding domain PF553_05530 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family PF553_05535 PF00561 alpha/beta hydrolase fold PF553_05540 PF18113 Rubredoxin binding C-terminal domain PF553_05540 PF07992 Pyridine nucleotide-disulphide oxidoreductase PF553_05545 PF00301 Rubredoxin PF553_05560 PF01336 OB-fold nucleic acid binding domain PF553_05560 PF00152 tRNA synthetases class II (D, K and N) PF553_05565 PF14052 Capsule assembly protein Wzi PF553_05575 PF01507 Phosphoadenosine phosphosulfate reductase family PF553_05580 PF00009 Elongation factor Tu GTP binding domain PF553_05595 PF03600 Citrate transporter PF553_05600 PF00571 CBS domain PF553_05600 PF03471 Transporter associated domain PF553_05600 PF01595 Cyclin M transmembrane N-terminal domain PF553_05605 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family PF553_05605 PF03466 LysR substrate binding domain PF553_05610 PF00463 Isocitrate lyase family PF553_05625 PF01774 UreD urease accessory protein PF553_05630 PF00547 Urease, gamma subunit PF553_05635 PF00699 Urease beta subunit PF553_05640 PF00449 Urease alpha-subunit, N-terminal domain PF553_05640 PF01979 Amidohydrolase family PF553_05645 PF05194 UreE urease accessory protein, C-terminal domain PF553_05645 PF02814 UreE urease accessory protein, N-terminal domain PF553_05650 PF01730 UreF PF553_05655 PF02492 CobW/HypB/UreG, nucleotide-binding domain PF553_05670 PF03717 Penicillin-binding Protein dimerisation domain PF553_05670 PF00905 Penicillin binding protein transpeptidase domain PF553_05685 PF05191 Adenylate kinase, active site lid PF553_05695 PF10576 Iron-sulfur binding domain of endonuclease III PF553_05695 PF00633 Helix-hairpin-helix motif PF553_05695 PF00730 HhH-GPD superfamily base excision DNA repair protein PF553_05700 PF04060 Putative Fe-S cluster PF553_05705 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain PF553_05705 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase PF553_05715 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase PF553_05720 PF02590 Predicted SPOUT methyltransferase PF553_05725 PF00004 ATPase family associated with various cellular activities (AAA) PF553_05725 PF05362 Lon protease (S16) C-terminal proteolytic domain PF553_05725 PF02190 ATP-dependent protease La (LON) substrate-binding domain PF553_05730 PF13018 Extended Signal Peptide of Type V secretion system PF553_05730 PF03895 YadA-like membrane anchor domain PF553_05730 PF05658 Head domain of trimeric autotransporter adhesin PF553_05730 PF05662 Coiled stalk of trimeric autotransporter adhesin PF553_05735 PF00691 OmpA family PF553_05735 PF04355 SmpA / OmlA family PF553_05740 PF01812 5-formyltetrahydrofolate cyclo-ligase family PF553_06050 PF13007 Transposase C of IS166 homeodomain PF553_06050 PF13817 IS66 C-terminal element PF553_06050 PF03050 Transposase IS66 family PF553_06050 PF13005 zinc-finger binding domain of transposase IS66 PF553_06065 PF03869 Arc-like DNA binding domain PF553_06130 PF13356 Arm DNA-binding domain PF553_06130 PF00589 Phage integrase family PF553_06140 PF00854 POT family PF553_06145 PF00120 Glutamine synthetase, catalytic domain PF553_06145 PF03951 Glutamine synthetase, beta-Grasp domain PF553_06150 PF04345 Chorismate lyase PF553_06155 PF01040 UbiA prenyltransferase family PF553_06190 PF02777 Iron/manganese superoxide dismutases, C-terminal domain PF553_06190 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain PF553_06195 PF01784 NIF3 (NGG1p interacting factor 3) PF553_06200 PF13180 PDZ domain PF553_06205 PF01743 Poly A polymerase head domain PF553_06205 PF12627 Probable RNA and SrmB- binding site of polymerase A PF553_06210 PF01515 Phosphate acetyl/butaryl transferase PF553_06210 PF03949 Malic enzyme, NAD binding domain PF553_06210 PF00390 Malic enzyme, N-terminal domain PF553_06215 PF00563 EAL domain PF553_06215 PF00990 Diguanylate cyclase, GGDEF domain PF553_06215 PF03707 Bacterial signalling protein N terminal repeat PF553_06220 PF04452 RNA methyltransferase PF553_06225 PF02219 Methylenetetrahydrofolate reductase PF553_06230 PF00670 S-adenosyl-L-homocysteine hydrolase, NAD binding domain PF553_06230 PF05221 S-adenosyl-L-homocysteine hydrolase PF553_06245 PF02771 Acyl-CoA dehydrogenase, N-terminal domain PF553_06245 PF00441 Acyl-CoA dehydrogenase, C-terminal domain PF553_06245 PF09317 Domain of unknown function (DUF1974) PF553_06250 PF04055 Radical SAM superfamily PF553_06255 PF07992 Pyridine nucleotide-disulphide oxidoreductase PF553_06255 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain PF553_06265 PF07690 Major Facilitator Superfamily PF553_06275 PF00557 Metallopeptidase family M24 PF553_06280 PF00318 Ribosomal protein S2 PF553_06285 PF00889 Elongation factor TS PF553_06295 PF12833 Helix-turn-helix domain PF553_06315 PF03330 Lytic transglycolase PF553_06315 PF05036 Sporulation related domain PF553_06320 PF13406 Transglycosylase SLT domain PF553_06325 PF01098 Cell cycle protein PF553_06335 PF14819 Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term PF553_06335 PF14489 QueF-like protein PF553_06340 PF01061 ABC-2 type transporter PF553_06345 PF00005 ABC transporter PF553_06375 PF00464 Serine hydroxymethyltransferase PF553_06380 PF02321 Outer membrane efflux protein PF553_06385 PF00873 AcrB/AcrD/AcrF family PF553_06390 PF13533 Biotin-lipoyl like PF553_06395 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family PF553_06395 PF03466 LysR substrate binding domain PF553_06400 PF00497 Bacterial extracellular solute-binding proteins, family 3 PF553_06405 PF00528 Binding-protein-dependent transport system inner membrane component PF553_06410 PF00528 Binding-protein-dependent transport system inner membrane component PF553_06415 PF00005 ABC transporter PF553_06420 PF00893 Small Multidrug Resistance protein PF553_06425 PF00037 4Fe-4S binding domain PF553_06430 PF16325 Peptidase family U32 C-terminal domain PF553_06430 PF01136 Peptidase family U32 PF553_06435 PF00155 Aminotransferase class I and II PF553_06435 PF00392 Bacterial regulatory proteins, gntR family PF553_06440 PF02567 Phenazine biosynthesis-like protein PF553_06445 PF00175 Oxidoreductase NAD-binding domain PF553_06445 PF00970 Oxidoreductase FAD-binding domain PF553_06450 PF18389 TrmO C-terminal domain PF553_06450 PF01980 tRNA-methyltransferase O PF553_06480 PF00072 Response regulator receiver domain PF553_06480 PF00486 Transcriptional regulatory protein, C terminal PF553_06485 PF08521 Two-component sensor kinase N-terminal PF553_06485 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PF553_06485 PF00512 His Kinase A (phospho-acceptor) domain PF553_06495 PF00293 NUDIX domain PF553_06505 PF14814 Bifunctional transglycosylase second domain PF553_06505 PF00905 Penicillin binding protein transpeptidase domain PF553_06505 PF00912 Transglycosylase PF553_06510 PF01513 ATP-NAD kinase PF553_06515 PF07023 Protein of unknown function (DUF1315) PF553_06520 PF00591 Glycosyl transferase family, a/b domain PF553_06520 PF02885 Glycosyl transferase family, helical bundle domain PF553_06525 PF00375 Sodium:dicarboxylate symporter family PF553_06530 PF02771 Acyl-CoA dehydrogenase, N-terminal domain PF553_06530 PF02770 Acyl-CoA dehydrogenase, middle domain PF553_06530 PF00441 Acyl-CoA dehydrogenase, C-terminal domain PF553_06535 PF00756 Putative esterase PF553_06540 PF01817 Chorismate mutase type II PF553_06540 PF01842 ACT domain PF553_06540 PF00800 Prephenate dehydratase PF553_06545 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) PF553_06555 PF01546 Peptidase family M20/M25/M40 PF553_06555 PF07687 Peptidase dimerisation domain PF553_06560 PF00753 Metallo-beta-lactamase superfamily PF553_06570 PF03883 Peroxide stress protein YaaA PF553_06580 PF05690 Thiazole biosynthesis protein ThiG PF553_06590 PF04241 Protein of unknown function (DUF423) PF553_06595 PF04545 Sigma-70, region 4 PF553_06595 PF00140 Sigma-70 factor, region 1.2 PF553_06595 PF04542 Sigma-70 region 2 PF553_06610 PF00313 'Cold-shock' DNA-binding domain PF553_06615 PF00271 Helicase conserved C-terminal domain PF553_06615 PF00270 DEAD/DEAH box helicase PF553_06625 PF00881 Nitroreductase family PF553_06630 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus PF553_06630 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus PF553_06650 PF01180 Dihydroorotate dehydrogenase PF553_06655 PF02674 Colicin V production protein PF553_06660 PF00156 Phosphoribosyl transferase domain PF553_06675 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain PF553_06675 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain PF553_06680 PF01435 Peptidase family M48 PF553_06685 PF09424 Yqey-like protein PF553_06690 PF01165 Ribosomal protein S21 PF553_06695 PF00814 Glycoprotease family PF553_06715 PF03793 PASTA domain PF553_06715 PF00069 Protein kinase domain PF553_06740 PF08479 POTRA domain, ShlB-type PF553_06740 PF17287 POTRA domain PF553_06740 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB PF553_06745 PF13332 Hemagglutinin repeat PF553_06745 PF05860 haemagglutination activity domain PF553_06745 PF13018 Extended Signal Peptide of Type V secretion system PF553_06745 PF13332 Hemagglutinin repeat PF553_06745 PF05860 haemagglutination activity domain PF553_06745 PF04829 Pre-toxin domain with VENN motif PF553_06745 PF04829 Pre-toxin domain with VENN motif PF553_06745 PF13018 Extended Signal Peptide of Type V secretion system PF553_06785 PF03466 LysR substrate binding domain PF553_06785 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family PF553_06815 PF08946 Osmosensory transporter coiled coil PF553_06815 PF00083 Sugar (and other) transporter PF553_06820 PF00293 NUDIX domain PF553_06850 PF04403 Paraquat-inducible protein A PF553_06855 PF02470 MlaD protein PF553_06865 PF01177 Asp/Glu/Hydantoin racemase PF553_06870 PF00892 EamA-like transporter family PF553_06880 PF07995 Glucose / Sorbosone dehydrogenase PF553_06900 PF00375 Sodium:dicarboxylate symporter family PF553_06910 PF00753 Metallo-beta-lactamase superfamily PF553_06910 PF16123 Hydroxyacylglutathione hydrolase C-terminus PF553_06915 PF00528 Binding-protein-dependent transport system inner membrane component PF553_06920 PF00005 ABC transporter PF553_06920 PF09383 NIL domain PF553_06925 PF03180 NLPA lipoprotein PF553_06930 PF02844 Phosphoribosylglycinamide synthetase, N domain PF553_06930 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain PF553_06930 PF02843 Phosphoribosylglycinamide synthetase, C domain PF553_06935 PF02142 MGS-like domain PF553_06935 PF01808 AICARFT/IMPCHase bienzyme PF553_06940 PF02954 Bacterial regulatory protein, Fis family PF553_06960 PF01134 Glucose inhibited division protein A PF553_06960 PF13932 GidA associated domain PF553_06970 PF14403 Circularly permuted ATP-grasp type 2 PF553_06980 PF08379 Bacterial transglutaminase-like N-terminal region PF553_06980 PF01841 Transglutaminase-like superfamily PF553_06990 PF00842 Alanine racemase, C-terminal domain PF553_06990 PF01168 Alanine racemase, N-terminal domain PF553_06995 PF00772 DnaB-like helicase N terminal domain PF553_06995 PF03796 DnaB-like helicase C terminal domain PF553_07000 PF03948 Ribosomal protein L9, C-terminal domain PF553_07000 PF01281 Ribosomal protein L9, N-terminal domain PF553_07005 PF01084 Ribosomal protein S18 PF553_07010 PF01250 Ribosomal protein S6 PF553_07015 PF01040 UbiA prenyltransferase family PF553_07020 PF03626 Prokaryotic Cytochrome C oxidase subunit IV PF553_07025 PF00510 Cytochrome c oxidase subunit III PF553_07030 PF00115 Cytochrome C and Quinol oxidase polypeptide I PF553_07035 PF00116 Cytochrome C oxidase subunit II, periplasmic domain PF553_07035 PF06481 COX Aromatic Rich Motif PF553_07045 PF02896 PEP-utilising enzyme, TIM barrel domain PF553_07045 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain PF553_07045 PF00391 PEP-utilising enzyme, mobile domain PF553_07050 PF03618 Kinase/pyrophosphorylase PF553_07060 PF14883 Hypothetical glycosyl hydrolase family 13 PF553_07060 PF01522 Polysaccharide deacetylase PF553_07065 PF00535 Glycosyl transferase family 2 PF553_07070 PF13994 PgaD-like protein PF553_07080 PF00296 Luciferase-like monooxygenase PF553_07095 PF03466 LysR substrate binding domain PF553_07095 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family PF553_07105 PF03462 PCRF domain PF553_07105 PF00472 RF-1 domain PF553_07110 PF13847 Methyltransferase domain PF553_07110 PF17827 PrmC N-terminal domain PF553_07115 PF12833 Helix-turn-helix domain PF553_07120 PF00106 short chain dehydrogenase PF553_07125 PF02771 Acyl-CoA dehydrogenase, N-terminal domain PF553_07125 PF02770 Acyl-CoA dehydrogenase, middle domain PF553_07125 PF00441 Acyl-CoA dehydrogenase, C-terminal domain PF553_07130 PF13193 AMP-binding enzyme C-terminal domain PF553_07130 PF00501 AMP-binding enzyme PF553_07135 PF01613 Flavin reductase like domain PF553_07140 PF00899 ThiF family PF553_07145 PF03109 ABC1 family PF553_07150 PF02152 Dihydroneopterin aldolase PF553_07160 PF03814 Potassium-transporting ATPase A subunit PF553_07170 PF02669 K+-transporting ATPase, c chain PF553_07175 PF13493 Domain of unknown function (DUF4118) PF553_07175 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PF553_07175 PF00512 His Kinase A (phospho-acceptor) domain PF553_07175 PF02702 Osmosensitive K+ channel His kinase sensor domain PF553_07180 PF00486 Transcriptional regulatory protein, C terminal PF553_07180 PF00072 Response regulator receiver domain PF553_07185 PF00120 Glutamine synthetase, catalytic domain PF553_07195 PF03232 Ubiquinone biosynthesis protein COQ7 PF553_07200 PF07690 Major Facilitator Superfamily PF553_07205 PF17243 POTRA domain TamA domain 1 PF553_07205 PF01103 Surface antigen PF553_07205 PF07244 Surface antigen variable number repeat PF553_07220 PF00330 Aconitase family (aconitate hydratase) PF553_07220 PF06434 Aconitate hydratase 2 N-terminus PF553_07220 PF11791 Aconitate B N-terminal domain PF553_07230 PF00027 Cyclic nucleotide-binding domain PF553_07230 PF00520 Ion transport protein PF553_07235 PF07690 Major Facilitator Superfamily PF553_07250 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family PF553_07250 PF03466 LysR substrate binding domain PF553_07255 PF04284 Protein of unknown function (DUF441) PF553_07265 PF01479 S4 domain PF553_07265 PF00849 RNA pseudouridylate synthase PF553_07280 PF01479 S4 domain PF553_07280 PF00849 RNA pseudouridylate synthase PF553_07285 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE PF553_07290 PF01119 DNA mismatch repair protein, C-terminal domain PF553_07290 PF08676 MutL C terminal dimerisation domain PF553_07300 PF17209 Hfq protein PF553_07310 PF00881 Nitroreductase family PF553_07320 PF00149 Calcineurin-like phosphoesterase PF553_07325 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD PF553_07330 PF00749 tRNA synthetases class I (E and Q), catalytic domain PF553_07330 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain PF553_07335 PF00958 GMP synthase C terminal domain PF553_07335 PF02540 NAD synthase PF553_07335 PF00117 Glutamine amidotransferase class-I PF553_07340 PF05985 Ethanolamine ammonia-lyase light chain (EutC) PF553_07345 PF06751 Ethanolamine ammonia lyase large subunit (EutB) PF553_07350 PF13520 Amino acid permease PF553_07355 PF00171 Aldehyde dehydrogenase family PF553_07370 PF00465 Iron-containing alcohol dehydrogenase PF553_07375 PF14493 Helix-turn-helix domain PF553_07375 PF05970 PIF1-like helicase PF553_07385 PF06445 GyrI-like small molecule binding domain PF553_07390 PF02110 Hydroxyethylthiazole kinase family PF553_07405 PF01433 Peptidase family M1 domain PF553_07405 PF17432 Domain of unknown function (DUF3458_C) ARM repeats PF553_07405 PF11940 Domain of unknown function (DUF3458) Ig-like fold PF553_07420 PF13953 PapC C-terminal domain PF553_07420 PF00577 Outer membrane usher protein PF553_07420 PF13954 PapC N-terminal domain PF553_07445 PF01817 Chorismate mutase type II PF553_07450 PF01037 Lrp/AsnC ligand binding domain PF553_07460 PF00440 Bacterial regulatory proteins, tetR family PF553_07465 PF07715 TonB-dependent Receptor Plug Domain PF553_07465 PF00593 TonB dependent receptor PF553_07470 PF00924 Mechanosensitive ion channel PF553_07500 PF00593 TonB dependent receptor PF553_07500 PF07715 TonB-dependent Receptor Plug Domain PF553_07520 PF00005 ABC transporter PF553_07520 PF12848 ABC transporter PF553_07525 PF00582 Universal stress protein family PF553_07550 PF00689 Cation transporting ATPase, C-terminus PF553_07550 PF00690 Cation transporter/ATPase, N-terminus PF553_07555 PF02308 MgtC family PF553_07560 PF03594 Benzoate membrane transport protein PF553_07565 PF01037 Lrp/AsnC ligand binding domain PF553_07585 PF13005 zinc-finger binding domain of transposase IS66 PF553_07585 PF13817 IS66 C-terminal element PF553_07585 PF03050 Transposase IS66 family PF553_07585 PF13007 Transposase C of IS166 homeodomain PF553_07595 PF00923 Transaldolase/Fructose-6-phosphate aldolase PF553_07600 PF03466 LysR substrate binding domain PF553_07600 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family PF553_07610 PF00108 Thiolase, N-terminal domain PF553_07610 PF02803 Thiolase, C-terminal domain PF553_07620 PF01575 MaoC like domain PF553_07625 PF00144 Beta-lactamase PF553_07635 PF07690 Major Facilitator Superfamily PF553_07640 PF12170 DNA polymerase III tau subunit V interacting with alpha PF553_07640 PF12169 DNA polymerase III subunits gamma and tau domain III PF553_07640 PF12168 DNA polymerase III subunits tau domain IV DnaB-binding PF553_07650 PF05506 Domain of unknown function (DUF756) PF553_07650 PF04185 Phosphoesterase family PF553_07655 PF03061 Thioesterase superfamily PF553_07660 PF00465 Iron-containing alcohol dehydrogenase PF553_07670 PF01451 Low molecular weight phosphotyrosine protein phosphatase PF553_07675 PF01565 FAD binding domain PF553_07675 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain PF553_07690 PF01645 Conserved region in glutamate synthase PF553_07710 PF12832 MFS_1 like family PF553_07720 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain PF553_07720 PF02785 Biotin carboxylase C-terminal domain PF553_07720 PF00289 Biotin carboxylase, N-terminal domain PF553_07725 PF00364 Biotin-requiring enzyme PF553_07730 PF01220 Dehydroquinase class II PF553_07735 PF11799 impB/mucB/samB family C-terminal domain PF553_07735 PF00817 impB/mucB/samB family PF553_07735 PF13438 Domain of unknown function (DUF4113) PF553_07740 PF00005 ABC transporter PF553_07745 PF00486 Transcriptional regulatory protein, C terminal PF553_07745 PF00072 Response regulator receiver domain PF553_07755 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain PF553_07755 PF01077 Nitrite and sulphite reductase 4Fe-4S domain PF553_07755 PF18267 Rubredoxin NAD+ reductase C-terminal domain PF553_07755 PF13806 Rieske-like [2Fe-2S] domain PF553_07755 PF07992 Pyridine nucleotide-disulphide oxidoreductase PF553_07755 PF04324 BFD-like [2Fe-2S] binding domain PF553_07760 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain PF553_07760 PF18267 Rubredoxin NAD+ reductase C-terminal domain PF553_07760 PF04324 BFD-like [2Fe-2S] binding domain PF553_07760 PF07992 Pyridine nucleotide-disulphide oxidoreductase PF553_07760 PF01077 Nitrite and sulphite reductase 4Fe-4S domain PF553_07765 PF04324 BFD-like [2Fe-2S] binding domain PF553_07765 PF04879 Molybdopterin oxidoreductase Fe4S4 domain PF553_07765 PF00384 Molybdopterin oxidoreductase PF553_07765 PF01568 Molydopterin dinucleotide binding domain PF553_07770 PF12804 MobA-like NTP transferase domain PF553_07775 PF00384 Molybdopterin oxidoreductase PF553_07775 PF01568 Molydopterin dinucleotide binding domain PF553_07775 PF04879 Molybdopterin oxidoreductase Fe4S4 domain PF553_07780 PF06463 Molybdenum Cofactor Synthesis C PF553_07780 PF04055 Radical SAM superfamily PF553_07790 PF02391 MoaE protein PF553_07795 PF01967 MoaC family PF553_07795 PF00994 Probable molybdopterin binding domain PF553_07800 PF03454 MoeA C-terminal region (domain IV) PF553_07800 PF03453 MoeA N-terminal region (domain I and II) PF553_07800 PF00994 Probable molybdopterin binding domain PF553_07805 PF01638 HxlR-like helix-turn-helix PF553_07810 PF00155 Aminotransferase class I and II PF553_07810 PF00392 Bacterial regulatory proteins, gntR family PF553_07815 PF00892 EamA-like transporter family PF553_07835 PF02635 DsrE/DsrF-like family PF553_07840 PF16363 GDP-mannose 4,6 dehydratase PF553_07845 PF10415 Fumarase C C-terminus PF553_07845 PF00206 Lyase PF553_07870 PF01266 FAD dependent oxidoreductase PF553_07880 PF02542 YgbB family PF553_07890 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain PF553_07890 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain PF553_07910 PF00158 Sigma-54 interaction domain PF553_07910 PF02954 Bacterial regulatory protein, Fis family PF553_07910 PF00072 Response regulator receiver domain PF553_07915 PF00989 PAS fold PF553_07915 PF00512 His Kinase A (phospho-acceptor) domain PF553_07915 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PF553_07925 PF00919 Uncharacterized protein family UPF0004 PF553_07925 PF18693 TRAM domain PF553_07925 PF04055 Radical SAM superfamily PF553_07930 PF00696 Amino acid kinase family PF553_07935 PF01765 Ribosome recycling factor PF553_07940 PF01255 Putative undecaprenyl diphosphate synthase PF553_07950 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain PF553_07950 PF13288 DXP reductoisomerase C-terminal domain PF553_07950 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase PF553_07955 PF17820 PDZ domain PF553_07955 PF02163 Peptidase family M50 PF553_07955 PF13180 PDZ domain PF553_07960 PF01103 Surface antigen PF553_07960 PF07244 Surface antigen variable number repeat PF553_07970 PF00132 Bacterial transferase hexapeptide (six repeats) PF553_07970 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD PF553_07975 PF07977 FabA-like domain PF553_07980 PF00132 Bacterial transferase hexapeptide (six repeats) PF553_07980 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 PF553_07995 PF02631 RecX family PF553_08000 PF00154 recA bacterial DNA recombination protein PF553_08005 PF01479 S4 domain PF553_08010 PF13419 Haloacid dehalogenase-like hydrolase PF553_08035 PF01037 Lrp/AsnC ligand binding domain PF553_08040 PF00266 Aminotransferase class-V PF553_08045 PF00324 Amino acid permease PF553_08060 PF05922 Peptidase inhibitor I9 PF553_08060 PF00082 Subtilase family PF553_08070 PF13005 zinc-finger binding domain of transposase IS66 PF553_08070 PF13007 Transposase C of IS166 homeodomain PF553_08070 PF13817 IS66 C-terminal element PF553_08070 PF03050 Transposase IS66 family PF553_08085 PF01740 STAS domain PF553_08085 PF00916 Sulfate permease family PF553_08090 PF02586 SOS response associated peptidase (SRAP) PF553_08095 PF07995 Glucose / Sorbosone dehydrogenase PF553_08115 PF13007 Transposase C of IS166 homeodomain PF553_08115 PF03050 Transposase IS66 family PF553_08115 PF13817 IS66 C-terminal element PF553_08115 PF13005 zinc-finger binding domain of transposase IS66 PF553_08125 PF00563 EAL domain PF553_08125 PF00990 Diguanylate cyclase, GGDEF domain PF553_08125 PF03707 Bacterial signalling protein N terminal repeat PF553_08140 PF02378 Phosphotransferase system, EIIC PF553_08140 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit PF553_08145 PF00294 pfkB family carbohydrate kinase PF553_08150 PF05524 PEP-utilising enzyme, N-terminal PF553_08150 PF02896 PEP-utilising enzyme, TIM barrel domain PF553_08150 PF00381 PTS HPr component phosphorylation site PF553_08150 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 PF553_08150 PF00391 PEP-utilising enzyme, mobile domain PF553_08175 PF05525 Branched-chain amino acid transport protein PF553_08180 PF00557 Metallopeptidase family M24 PF553_08185 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family PF553_08185 PF03466 LysR substrate binding domain PF553_08195 PF00462 Glutaredoxin PF553_08200 PF00202 Aminotransferase class-III PF553_08205 PF00571 CBS domain PF553_08205 PF00478 IMP dehydrogenase / GMP reductase domain PF553_08230 PF02881 SRP54-type protein, helical bundle domain PF553_08230 PF00448 SRP54-type protein, GTPase domain PF553_08240 PF09829 Uncharacterized protein conserved in bacteria (DUF2057) PF553_08250 PF08173 Membrane bound YbgT-like protein PF553_08255 PF02322 Cytochrome bd terminal oxidase subunit II PF553_08260 PF01654 Cytochrome bd terminal oxidase subunit I PF553_08270 PF13817 IS66 C-terminal element PF553_08270 PF13005 zinc-finger binding domain of transposase IS66 PF553_08270 PF03050 Transposase IS66 family PF553_08270 PF13007 Transposase C of IS166 homeodomain PF553_08285 PF07290 Protein of unknown function (DUF1449) PF553_08295 PF00294 pfkB family carbohydrate kinase PF553_08300 PF07715 TonB-dependent Receptor Plug Domain PF553_08300 PF00593 TonB dependent receptor PF553_08305 PF00675 Insulinase (Peptidase family M16) PF553_08305 PF05193 Peptidase M16 inactive domain PF553_08305 PF08367 Peptidase M16C associated PF553_08310 PF02253 Phospholipase A1 PF553_08315 PF02386 Cation transport protein PF553_08320 PF02080 TrkA-C domain PF553_08320 PF02254 TrkA-N domain PF553_08325 PF00291 Pyridoxal-phosphate dependent enzyme PF553_08325 PF00585 C-terminal regulatory domain of Threonine dehydratase PF553_08330 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) PF553_08345 PF01118 Semialdehyde dehydrogenase, NAD binding domain PF553_08345 PF02774 Semialdehyde dehydrogenase, dimerisation domain PF553_08355 PF02617 ATP-dependent Clp protease adaptor protein ClpS PF553_08360 PF17871 AAA lid domain PF553_08360 PF07724 AAA domain (Cdc48 subfamily) PF553_08360 PF00004 ATPase family associated with various cellular activities (AAA) PF553_08360 PF10431 C-terminal, D2-small domain, of ClpB protein PF553_08360 PF02861 Clp amino terminal domain, pathogenicity island component PF553_08365 PF02694 Uncharacterised BCR, YnfA/UPF0060 family PF553_08370 PF00793 DAHP synthetase I family PF553_08385 PF00724 NADH:flavin oxidoreductase / NADH oxidase family PF553_08385 PF07992 Pyridine nucleotide-disulphide oxidoreductase PF553_08415 PF00117 Glutamine amidotransferase class-I PF553_08415 PF06418 CTP synthase N-terminus PF553_08420 PF00793 DAHP synthetase I family PF553_08425 PF00113 Enolase, C-terminal TIM barrel domain PF553_08425 PF03952 Enolase, N-terminal domain PF553_08430 PF04239 Protein of unknown function (DUF421) PF553_08435 PF04977 Septum formation initiator PF553_08440 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase PF553_08445 PF01144 Coenzyme A transferase PF553_08450 PF01144 Coenzyme A transferase PF553_08455 PF00108 Thiolase, N-terminal domain PF553_08455 PF02803 Thiolase, C-terminal domain PF553_08460 PF10397 Adenylosuccinate lyase C-terminus PF553_08460 PF00206 Lyase PF553_08465 PF00561 alpha/beta hydrolase fold PF553_08470 PF07690 Major Facilitator Superfamily PF553_08475 PF02627 Carboxymuconolactone decarboxylase family PF553_08480 PF00775 Dioxygenase PF553_08480 PF12391 Protocatechuate 3,4-dioxygenase beta subunit N terminal PF553_08485 PF00775 Dioxygenase PF553_08490 PF01487 Type I 3-dehydroquinase PF553_08495 PF05048 Periplasmic copper-binding protein (NosD) PF553_08500 PF04966 Carbohydrate-selective porin, OprB family PF553_08505 PF13360 PQQ-like domain PF553_08505 PF01011 PQQ enzyme repeat PF553_08515 PF04143 Sulphur transport PF553_08525 PF00753 Metallo-beta-lactamase superfamily PF553_08530 PF09339 IclR helix-turn-helix domain PF553_08530 PF01614 Bacterial transcriptional regulator PF553_08535 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family PF553_08535 PF03466 LysR substrate binding domain PF553_08540 PF00441 Acyl-CoA dehydrogenase, C-terminal domain PF553_08540 PF02771 Acyl-CoA dehydrogenase, N-terminal domain PF553_08540 PF02770 Acyl-CoA dehydrogenase, middle domain PF553_08555 PF00106 short chain dehydrogenase PF553_08565 PF07690 Major Facilitator Superfamily PF553_08575 PF01425 Amidase PF553_08580 PF08028 Acyl-CoA dehydrogenase, C-terminal domain PF553_08595 PF00355 Rieske [2Fe-2S] domain PF553_08595 PF00848 Ring hydroxylating alpha subunit (catalytic domain) PF553_08610 PF00111 2Fe-2S iron-sulfur cluster binding domain PF553_08610 PF00175 Oxidoreductase NAD-binding domain PF553_08615 PF01613 Flavin reductase like domain PF553_08620 PF12833 Helix-turn-helix domain PF553_08620 PF02311 AraC-like ligand binding domain PF553_08625 PF01179 Copper amine oxidase, enzyme domain PF553_08625 PF07833 Copper amine oxidase N-terminal domain PF553_08625 PF02727 Copper amine oxidase, N2 domain PF553_08625 PF02728 Copper amine oxidase, N3 domain PF553_08635 PF00171 Aldehyde dehydrogenase family PF553_08640 PF01804 Penicillin amidase PF553_08645 PF12146 Serine aminopeptidase, S33 PF553_08650 PF02803 Thiolase, C-terminal domain PF553_08650 PF00108 Thiolase, N-terminal domain PF553_08655 PF01144 Coenzyme A transferase PF553_08660 PF01144 Coenzyme A transferase PF553_08665 PF04444 Catechol dioxygenase N terminus PF553_08665 PF00775 Dioxygenase PF553_08670 PF02426 Muconolactone delta-isomerase PF553_08675 PF13378 Enolase C-terminal domain-like PF553_08675 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain PF553_08680 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family PF553_08680 PF03466 LysR substrate binding domain PF553_08690 PF00392 Bacterial regulatory proteins, gntR family PF553_08690 PF07729 FCD domain PF553_08695 PF00920 Dehydratase family PF553_08700 PF07690 Major Facilitator Superfamily PF553_08710 PF00171 Aldehyde dehydrogenase family PF553_08720 PF00561 alpha/beta hydrolase fold PF553_08725 PF07992 Pyridine nucleotide-disulphide oxidoreductase PF553_08725 PF00724 NADH:flavin oxidoreductase / NADH oxidase family PF553_08740 PF09278 MerR, DNA binding PF553_08740 PF00376 MerR family regulatory protein PF553_08750 PF07992 Pyridine nucleotide-disulphide oxidoreductase PF553_08760 PF12706 Beta-lactamase superfamily domain PF553_08765 PF08359 YsiA-like protein, C-terminal region PF553_08765 PF00440 Bacterial regulatory proteins, tetR family PF553_08775 PF00857 Isochorismatase family PF553_08780 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family PF553_08780 PF03466 LysR substrate binding domain PF553_08785 PF07995 Glucose / Sorbosone dehydrogenase PF553_08790 PF02254 TrkA-N domain PF553_08790 PF00999 Sodium/hydrogen exchanger family PF553_08800 PF07687 Peptidase dimerisation domain PF553_08800 PF01546 Peptidase family M20/M25/M40 PF553_08810 PF00145 C-5 cytosine-specific DNA methylase PF553_08815 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PF553_08815 PF00512 His Kinase A (phospho-acceptor) domain PF553_08835 PF07690 Major Facilitator Superfamily PF553_08840 PF04909 Amidohydrolase PF553_08850 PF00392 Bacterial regulatory proteins, gntR family PF553_08850 PF07702 UTRA domain PF553_08855 PF08450 SMP-30/Gluconolactonase/LRE-like region PF553_08865 PF03466 LysR substrate binding domain PF553_08865 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family PF553_08890 PF00529 HlyD membrane-fusion protein of T1SS PF553_08890 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion PF553_08905 PF00171 Aldehyde dehydrogenase family PF553_08910 PF00920 Dehydratase family PF553_08920 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family PF553_08920 PF03466 LysR substrate binding domain PF553_08925 PF01370 NAD dependent epimerase/dehydratase family PF553_08930 PF07690 Major Facilitator Superfamily PF553_08935 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase PF553_08935 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase PF553_08940 PF06719 AraC-type transcriptional regulator N-terminus PF553_08940 PF12833 Helix-turn-helix domain PF553_08955 PF00107 Zinc-binding dehydrogenase PF553_08955 PF08240 Alcohol dehydrogenase GroES-like domain PF553_08965 PF01032 FecCD transport family PF553_08970 PF00005 ABC transporter PF553_08990 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase PF553_08990 PF14572 Phosphoribosyl synthetase-associated domain PF553_09015 PF13533 Biotin-lipoyl like PF553_09020 PF07690 Major Facilitator Superfamily PF553_09045 PF01975 Survival protein SurE PF553_09055 PF13291 ACT domain PF553_09055 PF04607 Region found in RelA / SpoT proteins PF553_09055 PF02824 TGS domain PF553_09060 PF13286 Phosphohydrolase-associated domain PF553_09060 PF01966 HD domain PF553_09080 PF02689 Helicase PF553_09080 PF05970 PIF1-like helicase PF553_09115 PF07690 Major Facilitator Superfamily PF553_09115 PF00083 Sugar (and other) transporter PF553_09120 PF03573 outer membrane porin, OprD family PF553_09135 PF03050 Transposase IS66 family PF553_09135 PF13007 Transposase C of IS166 homeodomain PF553_09135 PF13005 zinc-finger binding domain of transposase IS66 PF553_09135 PF13817 IS66 C-terminal element PF553_09140 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family PF553_09140 PF03466 LysR substrate binding domain PF553_09150 PF09339 IclR helix-turn-helix domain PF553_09150 PF01614 Bacterial transcriptional regulator PF553_09185 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain PF553_09185 PF02753 Pili assembly chaperone PapD, C-terminal domain PF553_09190 PF00577 Outer membrane usher protein PF553_09190 PF13954 PapC N-terminal domain PF553_09190 PF13953 PapC C-terminal domain PF553_09195 PF00419 Fimbrial protein PF553_09205 PF08240 Alcohol dehydrogenase GroES-like domain PF553_09205 PF00107 Zinc-binding dehydrogenase PF553_09215 PF00199 Catalase PF553_09235 PF03050 Transposase IS66 family PF553_09235 PF13817 IS66 C-terminal element PF553_09235 PF13007 Transposase C of IS166 homeodomain PF553_09235 PF13005 zinc-finger binding domain of transposase IS66 PF553_09270 PF01244 Membrane dipeptidase (Peptidase family M19) PF553_09275 PF04055 Radical SAM superfamily PF553_09275 PF13186 Iron-sulfur cluster-binding domain PF553_09280 PF05402 Coenzyme PQQ synthesis protein D (PqqD) PF553_09285 PF03070 TENA/THI-4/PQQC family PF553_09290 PF12706 Beta-lactamase superfamily domain PF553_09295 PF08042 PqqA family PF553_09300 PF13089 Polyphosphate kinase N-terminal domain PF553_09300 PF02503 Polyphosphate kinase middle domain PF553_09300 PF13090 Polyphosphate kinase C-terminal domain 2 PF553_09300 PF17941 Polyphosphate kinase C-terminal domain 1 PF553_09305 PF00149 Calcineurin-like phosphoesterase PF553_09315 PF00857 Isochorismatase family PF553_09315 PF00550 Phosphopantetheine attachment site PF553_09320 PF00106 short chain dehydrogenase PF553_09325 PF00005 ABC transporter PF553_09325 PF03459 TOBE domain PF553_09330 PF00528 Binding-protein-dependent transport system inner membrane component PF553_09340 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family PF553_09340 PF03459 TOBE domain PF553_09345 PF00355 Rieske [2Fe-2S] domain PF553_09345 PF00848 Ring hydroxylating alpha subunit (catalytic domain) PF553_09350 PF00866 Ring hydroxylating beta subunit PF553_09355 PF00175 Oxidoreductase NAD-binding domain PF553_09355 PF00111 2Fe-2S iron-sulfur cluster binding domain PF553_09355 PF00970 Oxidoreductase FAD-binding domain PF553_09360 PF14525 AraC-binding-like domain PF553_09360 PF12833 Helix-turn-helix domain PF553_09370 PF01613 Flavin reductase like domain PF553_09385 PF01738 Dienelactone hydrolase family PF553_09390 PF07690 Major Facilitator Superfamily PF553_09395 PF12833 Helix-turn-helix domain PF553_09395 PF06719 AraC-type transcriptional regulator N-terminus PF553_09415 PF00440 Bacterial regulatory proteins, tetR family PF553_09435 PF03466 LysR substrate binding domain PF553_09435 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family PF553_09440 PF01144 Coenzyme A transferase PF553_09445 PF01144 Coenzyme A transferase PF553_09450 PF02667 Short chain fatty acid transporter PF553_09455 PF00108 Thiolase, N-terminal domain PF553_09455 PF02803 Thiolase, C-terminal domain PF553_09460 PF03466 LysR substrate binding domain PF553_09460 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family PF553_09465 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family PF553_09465 PF03466 LysR substrate binding domain PF553_09480 PF10415 Fumarase C C-terminus PF553_09480 PF00206 Lyase PF553_09485 PF00593 TonB dependent receptor PF553_09485 PF07715 TonB-dependent Receptor Plug Domain PF553_09490 PF00083 Sugar (and other) transporter PF553_09505 PF00005 ABC transporter PF553_09510 PF00528 Binding-protein-dependent transport system inner membrane component PF553_09515 PF04069 Substrate binding domain of ABC-type glycine betaine transport system PF553_09530 PF00392 Bacterial regulatory proteins, gntR family PF553_09530 PF07702 UTRA domain PF553_09535 PF02417 Chromate transporter PF553_09540 PF02525 Flavodoxin-like fold PF553_09545 PF01638 HxlR-like helix-turn-helix PF553_09550 PF06445 GyrI-like small molecule binding domain PF553_09550 PF12833 Helix-turn-helix domain PF553_09565 PF01925 Sulfite exporter TauE/SafE PF553_09580 PF04273 Putative phosphatase (DUF442) PF553_09580 PF00753 Metallo-beta-lactamase superfamily PF553_09585 PF02954 Bacterial regulatory protein, Fis family PF553_09585 PF00072 Response regulator receiver domain PF553_09585 PF00158 Sigma-54 interaction domain PF553_09590 PF01062 Bestrophin, RFP-TM, chloride channel PF553_09595 PF00107 Zinc-binding dehydrogenase PF553_09595 PF08240 Alcohol dehydrogenase GroES-like domain PF553_09600 PF00106 short chain dehydrogenase PF553_09605 PF07992 Pyridine nucleotide-disulphide oxidoreductase PF553_09605 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain PF553_09610 PF02817 e3 binding domain PF553_09610 PF00364 Biotin-requiring enzyme PF553_09610 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) PF553_09615 PF02780 Transketolase, C-terminal domain PF553_09615 PF02779 Transketolase, pyrimidine binding domain PF553_09620 PF00676 Dehydrogenase E1 component PF553_09625 PF04055 Radical SAM superfamily PF553_09640 PF00990 Diguanylate cyclase, GGDEF domain PF553_09640 PF08448 PAS fold PF553_09645 PF03050 Transposase IS66 family PF553_09645 PF13817 IS66 C-terminal element PF553_09645 PF13005 zinc-finger binding domain of transposase IS66 PF553_09645 PF13007 Transposase C of IS166 homeodomain PF553_09660 PF01264 Chorismate synthase PF553_09665 PF05175 Methyltransferase small domain PF553_09670 PF00291 Pyridoxal-phosphate dependent enzyme PF553_09680 PF00004 ATPase family associated with various cellular activities (AAA) PF553_09680 PF17862 AAA+ lid domain PF553_09680 PF01434 Peptidase family M41 PF553_09690 PF05166 YcgL domain PF553_09710 PF00570 HRDC domain PF553_09710 PF01612 3'-5' exonuclease PF553_09715 PF02132 RecR protein PF553_09715 PF13662 Toprim domain PF553_09720 PF02575 YbaB/EbfC DNA-binding family PF553_09730 PF01053 Cys/Met metabolism PLP-dependent enzyme PF553_09735 PF00561 alpha/beta hydrolase fold PF553_09740 PF08241 Methyltransferase domain PF553_09770 PF01230 HIT domain PF553_09780 PF13817 IS66 C-terminal element PF553_09780 PF13007 Transposase C of IS166 homeodomain PF553_09780 PF13005 zinc-finger binding domain of transposase IS66 PF553_09780 PF03050 Transposase IS66 family PF553_09820 PF00005 ABC transporter PF553_09825 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion PF553_09835 PF02684 Lipid-A-disaccharide synthetase PF553_09840 PF07715 TonB-dependent Receptor Plug Domain PF553_09840 PF00593 TonB dependent receptor PF553_09860 PF01925 Sulfite exporter TauE/SafE PF553_09865 PF00793 DAHP synthetase I family PF553_09870 PF02654 Cobalamin-5-phosphate synthase PF553_09885 PF02277 Phosphoribosyltransferase PF553_09890 PF02283 Cobinamide kinase / cobinamide phosphate guanyltransferase PF553_09900 PF13419 Haloacid dehalogenase-like hydrolase PF553_09925 PF07715 TonB-dependent Receptor Plug Domain PF553_09925 PF00593 TonB dependent receptor PF553_09930 PF03737 Aldolase/RraA PF553_09940 PF06276 Ferric iron reductase FhuF-like transporter PF553_09940 PF04183 IucA / IucC family PF553_09945 PF06276 Ferric iron reductase FhuF-like transporter PF553_09945 PF04183 IucA / IucC family PF553_09950 PF07690 Major Facilitator Superfamily PF553_09955 PF13434 L-lysine 6-monooxygenase (NADPH-requiring) PF553_09960 PF06276 Ferric iron reductase FhuF-like transporter PF553_09960 PF04183 IucA / IucC family PF553_09965 PF04073 Aminoacyl-tRNA editing domain PF553_09975 PF03109 ABC1 family PF553_09980 PF00441 Acyl-CoA dehydrogenase, C-terminal domain PF553_09980 PF02770 Acyl-CoA dehydrogenase, middle domain PF553_09980 PF02771 Acyl-CoA dehydrogenase, N-terminal domain PF553_09985 PF02770 Acyl-CoA dehydrogenase, middle domain PF553_09985 PF00441 Acyl-CoA dehydrogenase, C-terminal domain PF553_09985 PF02771 Acyl-CoA dehydrogenase, N-terminal domain PF553_09990 PF00487 Fatty acid desaturase PF553_09995 PF12833 Helix-turn-helix domain PF553_09995 PF12852 Cupin PF553_10000 PF09312 SurA N-terminal domain PF553_10000 PF00639 PPIC-type PPIASE domain PF553_10005 PF00216 Bacterial DNA-binding protein PF553_10020 PF02082 Transcriptional regulator PF553_10025 PF00266 Aminotransferase class-V PF553_10030 PF01592 NifU-like N terminal domain PF553_10035 PF01521 Iron-sulphur cluster biosynthesis PF553_10040 PF00226 DnaJ domain PF553_10040 PF07743 HSCB C-terminal oligomerisation domain PF553_10045 PF00012 Hsp70 protein PF553_10050 PF00111 2Fe-2S iron-sulfur cluster binding domain PF553_10055 PF00211 Adenylate and Guanylate cyclase catalytic domain PF553_10065 PF17757 UvrB interaction domain PF553_10065 PF03461 TRCF domain PF553_10065 PF00271 Helicase conserved C-terminal domain PF553_10065 PF00270 DEAD/DEAH box helicase PF553_10065 PF02559 CarD-like/TRCF domain PF553_10085 PF03737 Aldolase/RraA PF553_10090 PF13460 NAD(P)H-binding PF553_10095 PF01649 Ribosomal protein S20 PF553_10105 PF00459 Inositol monophosphatase family PF553_10120 PF08352 Oligopeptide/dipeptide transporter, C-terminal region PF553_10120 PF00005 ABC transporter PF553_10125 PF00528 Binding-protein-dependent transport system inner membrane component PF553_10130 PF00528 Binding-protein-dependent transport system inner membrane component PF553_10135 PF01432 Peptidase family M3 PF553_10165 PF01618 MotA/TolQ/ExbB proton channel family PF553_10170 PF02472 Biopolymer transport protein ExbD/TolR PF553_10175 PF02472 Biopolymer transport protein ExbD/TolR PF553_10185 PF01274 Malate synthase PF553_10190 PF03969 AFG1-like ATPase PF553_10200 PF00743 Flavin-binding monooxygenase-like PF553_10210 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family PF553_10220 PF00216 Bacterial DNA-binding protein PF553_10225 PF00575 S1 RNA binding domain PF553_10230 PF02224 Cytidylate kinase PF553_10240 PF14437 MafB19-like deaminase PF553_10250 PF03167 Uracil DNA glycosylase superfamily PF553_10260 PF03934 Type II secretion system (T2SS), protein K PF553_10265 PF11612 Type II secretion system (T2SS), protein J PF553_10265 PF07963 Prokaryotic N-terminal methylation motif PF553_10270 PF07963 Prokaryotic N-terminal methylation motif PF553_10270 PF02501 Type II secretion system (T2SS), protein I PF553_10285 PF01026 TatD related DNase PF553_10295 PF09115 DNA polymerase III, delta subunit, C terminal PF553_10300 PF02348 Cytidylyltransferase PF553_10305 PF02606 Tetraacyldisaccharide-1-P 4'-kinase PF553_10310 PF00664 ABC transporter transmembrane region PF553_10310 PF00005 ABC transporter PF553_10320 PF01618 MotA/TolQ/ExbB proton channel family PF553_10325 PF17762 HTH domain found in ParB protein PF553_10325 PF02195 ParB-like nuclease domain PF553_10330 PF13614 AAA domain PF553_10335 PF02527 rRNA small subunit methyltransferase G PF553_10340 PF00483 Nucleotidyl transferase PF553_10345 PF01636 Phosphotransferase enzyme family PF553_10350 PF03968 OstA-like protein PF553_10350 PF04453 LPS transport system D PF553_10355 PF00639 PPIC-type PPIASE domain PF553_10355 PF09312 SurA N-terminal domain PF553_10360 PF01116 Fructose-bisphosphate aldolase class-II PF553_10370 PF00162 Phosphoglycerate kinase PF553_10380 PF02545 Maf-like protein PF553_10385 PF08007 Cupin superfamily protein PF553_10400 PF00375 Sodium:dicarboxylate symporter family PF553_10405 PF06912 Protein of unknown function (DUF1275) PF553_10410 PF09831 Uncharacterized protein conserved in bacteria (DUF2058) PF553_10415 PF00664 ABC transporter transmembrane region PF553_10415 PF00005 ABC transporter PF553_10425 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term PF553_10425 PF12833 Helix-turn-helix domain PF553_10430 PF01597 Glycine cleavage H-protein PF553_10435 PF02146 Sir2 family PF553_10440 PF00474 Sodium:solute symporter family PF553_10445 PF01037 Lrp/AsnC ligand binding domain PF553_10450 PF00171 Aldehyde dehydrogenase family PF553_10450 PF18327 Proline utilization A proline dehydrogenase N-terminal domain PF553_10450 PF01619 Proline dehydrogenase PF553_10450 PF14850 DNA-binding domain of Proline dehydrogenase PF553_10455 PF04229 GrpB protein PF553_10460 PF05958 tRNA (Uracil-5-)-methyltransferase PF553_10470 PF09992 Phosphodiester glycosidase PF553_10480 PF04264 YceI-like domain PF553_10490 PF02779 Transketolase, pyrimidine binding domain PF553_10490 PF02780 Transketolase, C-terminal domain PF553_10490 PF00456 Transketolase, thiamine diphosphate binding domain PF553_10495 PF02773 S-adenosylmethionine synthetase, C-terminal domain PF553_10495 PF02772 S-adenosylmethionine synthetase, central domain PF553_10495 PF00438 S-adenosylmethionine synthetase, N-terminal domain PF553_10520 PF13005 zinc-finger binding domain of transposase IS66 PF553_10520 PF13007 Transposase C of IS166 homeodomain PF553_10520 PF13817 IS66 C-terminal element PF553_10520 PF03050 Transposase IS66 family PF553_10540 PF00905 Penicillin binding protein transpeptidase domain PF553_10555 PF02075 Crossover junction endodeoxyribonuclease RuvC PF553_10560 PF01256 Carbohydrate kinase PF553_10560 PF03853 YjeF-related protein N-terminus PF553_10565 PF08331 Domain of unknown function (DUF1730) PF553_10570 PF04055 Radical SAM superfamily PF553_10570 PF06968 Biotin and Thiamin Synthesis associated domain PF553_10585 PF16970 Type-1 fimbrial protein, A PF553_10590 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain PF553_10590 PF02753 Pili assembly chaperone PapD, C-terminal domain PF553_10595 PF00577 Outer membrane usher protein PF553_10595 PF13954 PapC N-terminal domain PF553_10595 PF13953 PapC C-terminal domain PF553_10630 PF13007 Transposase C of IS166 homeodomain PF553_10630 PF13817 IS66 C-terminal element PF553_10630 PF13005 zinc-finger binding domain of transposase IS66 PF553_10630 PF03050 Transposase IS66 family PF553_10645 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin PF553_10655 PF03466 LysR substrate binding domain PF553_10655 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family PF553_10675 PF00440 Bacterial regulatory proteins, tetR family PF553_10685 PF01709 Transcriptional regulator PF553_10690 PF01037 Lrp/AsnC ligand binding domain PF553_10700 PF00005 ABC transporter PF553_10705 PF00528 Binding-protein-dependent transport system inner membrane component PF553_10710 PF00528 Binding-protein-dependent transport system inner membrane component PF553_10725 PF02771 Acyl-CoA dehydrogenase, N-terminal domain PF553_10725 PF08028 Acyl-CoA dehydrogenase, C-terminal domain PF553_10735 PF00296 Luciferase-like monooxygenase PF553_10740 PF03180 NLPA lipoprotein PF553_10745 PF03180 NLPA lipoprotein PF553_10750 PF00005 ABC transporter PF553_10750 PF09383 NIL domain PF553_10755 PF00528 Binding-protein-dependent transport system inner membrane component PF553_10760 PF01926 50S ribosome-binding GTPase PF553_10760 PF06071 Protein of unknown function (DUF933) PF553_10785 PF03591 AzlC protein PF553_10790 PF05437 Branched-chain amino acid transport protein (AzlD) PF553_10800 PF02222 ATP-grasp domain PF553_10805 PF01909 Nucleotidyltransferase domain PF553_10805 PF01966 HD domain PF553_10805 PF08335 GlnD PII-uridylyltransferase PF553_10810 PF00155 Aminotransferase class I and II PF553_10820 PF13005 zinc-finger binding domain of transposase IS66 PF553_10820 PF03050 Transposase IS66 family PF553_10820 PF13817 IS66 C-terminal element PF553_10820 PF13007 Transposase C of IS166 homeodomain PF553_10840 PF12852 Cupin PF553_10840 PF12833 Helix-turn-helix domain PF553_10845 PF00255 Glutathione peroxidase PF553_10850 PF01641 SelR domain PF553_10855 PF00155 Aminotransferase class I and II PF553_10860 PF00375 Sodium:dicarboxylate symporter family PF553_10865 PF13737 Transposase DDE domain PF553_10870 PF00710 Asparaginase, N-terminal PF553_10870 PF17763 Glutaminase/Asparaginase C-terminal domain PF553_10875 PF14579 Helix-hairpin-helix motif PF553_10875 PF02811 PHP domain PF553_10875 PF01336 OB-fold nucleic acid binding domain PF553_10875 PF07733 Bacterial DNA polymerase III alpha NTPase domain PF553_10875 PF17657 Bacterial DNA polymerase III alpha subunit finger domain PF553_10880 PF00588 SpoU rRNA Methylase family PF553_10885 PF00132 Bacterial transferase hexapeptide (six repeats) PF553_10900 PF07992 Pyridine nucleotide-disulphide oxidoreductase PF553_10900 PF13192 Thioredoxin domain PF553_10915 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family PF553_10915 PF03466 LysR substrate binding domain PF553_10920 PF01758 Sodium Bile acid symporter family PF553_10925 PF01022 Bacterial regulatory protein, arsR family PF553_10930 PF03960 ArsC family PF553_10940 PF13382 Adenine deaminase C-terminal domain PF553_10940 PF01979 Amidohydrolase family PF553_10950 PF03466 LysR substrate binding domain PF553_10950 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family PF553_10960 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin PF553_10965 PF01177 Asp/Glu/Hydantoin racemase PF553_10970 PF02668 Taurine catabolism dioxygenase TauD, TfdA family PF553_10975 PF00528 Binding-protein-dependent transport system inner membrane component PF553_10980 PF00005 ABC transporter PF553_10985 PF04069 Substrate binding domain of ABC-type glycine betaine transport system PF553_11005 PF00083 Sugar (and other) transporter PF553_11010 PF00296 Luciferase-like monooxygenase PF553_11025 PF01654 Cytochrome bd terminal oxidase subunit I PF553_11030 PF02322 Cytochrome bd terminal oxidase subunit II PF553_11040 PF00155 Aminotransferase class I and II PF553_11040 PF00392 Bacterial regulatory proteins, gntR family PF553_11045 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family PF553_11045 PF03466 LysR substrate binding domain PF553_11060 PF00698 Acyl transferase domain PF553_11065 PF10620 Phosphoribosyl-dephospho-CoA transferase MdcG PF553_11075 PF01039 Carboxyl transferase domain PF553_11080 PF06857 Malonate decarboxylase delta subunit (MdcD) PF553_11085 PF01874 ATP:dephospho-CoA triphosphoribosyl transferase PF553_11090 PF16957 Malonate decarboxylase, alpha subunit, transporter PF553_11095 PF03466 LysR substrate binding domain PF553_11095 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family PF553_11105 PF07690 Major Facilitator Superfamily PF553_11120 PF00392 Bacterial regulatory proteins, gntR family PF553_11120 PF00155 Aminotransferase class I and II PF553_11125 PF04172 LrgB-like family PF553_11130 PF03788 LrgA family PF553_11135 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family PF553_11135 PF03466 LysR substrate binding domain PF553_11140 PF14834 Glutathione S-transferase, C-terminal domain PF553_11140 PF02798 Glutathione S-transferase, N-terminal domain PF553_11145 PF02798 Glutathione S-transferase, N-terminal domain PF553_11150 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family PF553_11150 PF03466 LysR substrate binding domain PF553_11160 PF00581 Rhodanese-like domain PF553_11165 PF00132 Bacterial transferase hexapeptide (six repeats) PF553_11175 PF00266 Aminotransferase class-V PF553_11180 PF01810 LysE type translocator PF553_11185 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family PF553_11185 PF03466 LysR substrate binding domain PF553_11195 PF00497 Bacterial extracellular solute-binding proteins, family 3 PF553_11200 PF00497 Bacterial extracellular solute-binding proteins, family 3 PF553_11205 PF00005 ABC transporter PF553_11210 PF00528 Binding-protein-dependent transport system inner membrane component PF553_11215 PF00528 Binding-protein-dependent transport system inner membrane component PF553_11230 PF00072 Response regulator receiver domain PF553_11235 PF09308 LuxQ, periplasmic PF553_11235 PF00072 Response regulator receiver domain PF553_11235 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PF553_11235 PF00512 His Kinase A (phospho-acceptor) domain PF553_11245 PF01037 Lrp/AsnC ligand binding domain PF553_11245 PF13404 AsnC-type helix-turn-helix domain PF553_11255 PF00717 Peptidase S24-like PF553_11290 PF02464 Competence-damaged protein PF553_11290 PF18146 Damage-inducible protein CinA KH domain PF553_11290 PF00994 Probable molybdopterin binding domain PF553_11325 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family PF553_11325 PF03466 LysR substrate binding domain PF553_11345 PF00501 AMP-binding enzyme PF553_11345 PF13193 AMP-binding enzyme C-terminal domain PF553_11350 PF00440 Bacterial regulatory proteins, tetR family PF553_11355 PF00441 Acyl-CoA dehydrogenase, C-terminal domain PF553_11355 PF02770 Acyl-CoA dehydrogenase, middle domain PF553_11355 PF02771 Acyl-CoA dehydrogenase, N-terminal domain PF553_11360 PF01039 Carboxyl transferase domain PF553_11365 PF00378 Enoyl-CoA hydratase/isomerase PF553_11370 PF18140 Propionyl-coenzyme A carboxylase BT domain PF553_11370 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain PF553_11370 PF00364 Biotin-requiring enzyme PF553_11370 PF00289 Biotin carboxylase, N-terminal domain PF553_11370 PF02785 Biotin carboxylase C-terminal domain PF553_11375 PF00682 HMGL-like PF553_11380 PF03466 LysR substrate binding domain PF553_11380 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family PF553_11395 PF12806 Acetyl-CoA dehydrogenase C-terminal like PF553_11395 PF00441 Acyl-CoA dehydrogenase, C-terminal domain PF553_11395 PF02771 Acyl-CoA dehydrogenase, N-terminal domain PF553_11395 PF02770 Acyl-CoA dehydrogenase, middle domain PF553_11405 PF07690 Major Facilitator Superfamily PF553_11415 PF01144 Coenzyme A transferase PF553_11420 PF01144 Coenzyme A transferase PF553_11425 PF07690 Major Facilitator Superfamily PF553_11430 PF00441 Acyl-CoA dehydrogenase, C-terminal domain PF553_11430 PF02770 Acyl-CoA dehydrogenase, middle domain PF553_11430 PF02771 Acyl-CoA dehydrogenase, N-terminal domain PF553_11435 PF00378 Enoyl-CoA hydratase/isomerase PF553_11445 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain PF553_11445 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain PF553_11445 PF18321 3-hydroxybutyryl-CoA dehydrogenase reduced Rossmann-fold domain PF553_11450 PF00108 Thiolase, N-terminal domain PF553_11450 PF02803 Thiolase, C-terminal domain PF553_11455 PF09339 IclR helix-turn-helix domain PF553_11460 PF07690 Major Facilitator Superfamily PF553_11465 PF03060 Nitronate monooxygenase PF553_11470 PF00378 Enoyl-CoA hydratase/isomerase PF553_11475 PF09339 IclR helix-turn-helix domain PF553_11480 PF02515 CoA-transferase family III PF553_11485 PF02771 Acyl-CoA dehydrogenase, N-terminal domain PF553_11485 PF02770 Acyl-CoA dehydrogenase, middle domain PF553_11485 PF00441 Acyl-CoA dehydrogenase, C-terminal domain PF553_11490 PF07690 Major Facilitator Superfamily PF553_11495 PF13419 Haloacid dehalogenase-like hydrolase PF553_11500 PF00266 Aminotransferase class-V PF553_11505 PF01266 FAD dependent oxidoreductase PF553_11510 PF00528 Binding-protein-dependent transport system inner membrane component PF553_11515 PF00005 ABC transporter PF553_11515 PF08402 TOBE domain PF553_11525 PF07702 UTRA domain PF553_11525 PF00392 Bacterial regulatory proteins, gntR family PF553_11530 PF01494 FAD binding domain PF553_11535 PF01614 Bacterial transcriptional regulator PF553_11535 PF09339 IclR helix-turn-helix domain PF553_11540 PF02525 Flavodoxin-like fold PF553_11545 PF03466 LysR substrate binding domain PF553_11545 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family PF553_11550 PF02627 Carboxymuconolactone decarboxylase family PF553_11555 PF00171 Aldehyde dehydrogenase family PF553_11565 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin PF553_11575 PF00171 Aldehyde dehydrogenase family PF553_11580 PF00296 Luciferase-like monooxygenase PF553_11585 PF01613 Flavin reductase like domain PF553_11590 PF12697 Alpha/beta hydrolase family PF553_11610 PF01292 Prokaryotic cytochrome b561 PF553_11615 PF00199 Catalase PF553_11640 PF13086 AAA domain PF553_11640 PF13087 AAA domain PF553_11640 PF13195 Protein of unknown function (DUF4011) PF553_11640 PF13086 AAA domain PF553_11640 PF13087 AAA domain PF553_11640 PF13195 Protein of unknown function (DUF4011) PF553_11645 PF03061 Thioesterase superfamily PF553_11650 PF00132 Bacterial transferase hexapeptide (six repeats) PF553_11655 PF07848 PaaX-like protein PF553_11655 PF08223 PaaX-like protein C-terminal domain PF553_11660 PF14535 AMP-binding enzyme C-terminal domain PF553_11660 PF00501 AMP-binding enzyme PF553_11665 PF02803 Thiolase, C-terminal domain PF553_11665 PF00108 Thiolase, N-terminal domain PF553_11670 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain PF553_11670 PF18321 3-hydroxybutyryl-CoA dehydrogenase reduced Rossmann-fold domain PF553_11670 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain PF553_11675 PF00378 Enoyl-CoA hydratase/isomerase PF553_11680 PF00378 Enoyl-CoA hydratase/isomerase PF553_11685 PF00970 Oxidoreductase FAD-binding domain PF553_11685 PF00111 2Fe-2S iron-sulfur cluster binding domain PF553_11685 PF00175 Oxidoreductase NAD-binding domain PF553_11690 PF01883 Iron-sulfur cluster assembly protein PF553_11695 PF05138 Phenylacetic acid catabolic protein PF553_11700 PF06243 Phenylacetic acid degradation B PF553_11705 PF05138 Phenylacetic acid catabolic protein PF553_11710 PF01575 MaoC like domain PF553_11710 PF00171 Aldehyde dehydrogenase family PF553_11715 PF03315 Serine dehydratase beta chain PF553_11715 PF03313 Serine dehydratase alpha chain PF553_11720 PF13520 Amino acid permease PF553_11725 PF00171 Aldehyde dehydrogenase family PF553_11730 PF00083 Sugar (and other) transporter PF553_11740 PF04324 BFD-like [2Fe-2S] binding domain PF553_11740 PF07992 Pyridine nucleotide-disulphide oxidoreductase PF553_11750 PF01266 FAD dependent oxidoreductase PF553_11755 PF05544 Proline racemase PF553_11760 PF00392 Bacterial regulatory proteins, gntR family PF553_11770 PF00701 Dihydrodipicolinate synthetase family PF553_11780 PF09278 MerR, DNA binding PF553_11780 PF00376 MerR family regulatory protein PF553_11790 PF02677 Epoxyqueuosine reductase QueH PF553_11805 PF07690 Major Facilitator Superfamily PF553_11810 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region PF553_11820 PF03466 LysR substrate binding domain PF553_11820 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family PF553_11840 PF05936 Bacterial Type VI secretion, VC_A0110, EvfL, ImpJ, VasE PF553_11845 PF06812 ImpA, N-terminal, type VI secretion system PF553_11850 PF10431 C-terminal, D2-small domain, of ClpB protein PF553_11850 PF00004 ATPase family associated with various cellular activities (AAA) PF553_11850 PF07724 AAA domain (Cdc48 subfamily) PF553_11850 PF17871 AAA lid domain PF553_11860 PF01389 OmpA-like transmembrane domain PF553_11860 PF00691 OmpA family PF553_11870 PF06744 Type VI secretion protein IcmF C-terminal PF553_11870 PF14331 ImcF-related N-terminal domain PF553_11870 PF06761 Intracellular multiplication and human macrophage-killing PF553_11900 PF05943 Type VI secretion protein, EvpB/VC_A0108, tail sheath PF553_11925 PF00005 ABC transporter PF553_11930 PF00497 Bacterial extracellular solute-binding proteins, family 3 PF553_11935 PF01425 Amidase PF553_11940 PF01402 Ribbon-helix-helix protein, copG family PF553_11940 PF08753 NikR C terminal nickel binding domain PF553_11955 PF01638 HxlR-like helix-turn-helix PF553_11960 PF02525 Flavodoxin-like fold PF553_11965 PF02785 Biotin carboxylase C-terminal domain PF553_11965 PF00289 Biotin carboxylase, N-terminal domain PF553_11965 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain PF553_11980 PF08240 Alcohol dehydrogenase GroES-like domain PF553_11980 PF13823 Alcohol dehydrogenase GroES-associated PF553_11980 PF00107 Zinc-binding dehydrogenase PF553_12005 PF13018 Extended Signal Peptide of Type V secretion system PF553_12005 PF04829 Pre-toxin domain with VENN motif PF553_12005 PF05860 haemagglutination activity domain PF553_12005 PF13332 Hemagglutinin repeat PF553_12010 PF08479 POTRA domain, ShlB-type PF553_12010 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB PF553_12010 PF17287 POTRA domain PF553_12015 PF00654 Voltage gated chloride channel PF553_12020 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain PF553_12020 PF00364 Biotin-requiring enzyme PF553_12020 PF00289 Biotin carboxylase, N-terminal domain PF553_12020 PF02785 Biotin carboxylase C-terminal domain PF553_12030 PF07286 Protein of unknown function (DUF1445) PF553_12035 PF03746 LamB/YcsF family PF553_12040 PF01566 Natural resistance-associated macrophage protein PF553_12045 PF03466 LysR substrate binding domain PF553_12045 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family PF553_12065 PF13419 Haloacid dehalogenase-like hydrolase PF553_12085 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain PF553_12085 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain PF553_12105 PF07690 Major Facilitator Superfamily PF553_12120 PF03279 Bacterial lipid A biosynthesis acyltransferase PF553_12125 PF03707 Bacterial signalling protein N terminal repeat PF553_12125 PF00563 EAL domain PF553_12125 PF00990 Diguanylate cyclase, GGDEF domain PF553_12130 PF00892 EamA-like transporter family PF553_12135 PF01037 Lrp/AsnC ligand binding domain PF553_12140 PF05188 MutS domain II PF553_12140 PF00488 MutS domain V PF553_12140 PF05190 MutS family domain IV PF553_12140 PF01624 MutS domain I PF553_12140 PF05192 MutS domain III PF553_12150 PF00037 4Fe-4S binding domain PF553_12150 PF11953 Domain of unknown function (DUF3470) PF553_12160 PF01596 O-methyltransferase PF553_12170 PF00132 Bacterial transferase hexapeptide (six repeats) PF553_12175 PF01205 Uncharacterized protein family UPF0029 PF553_12190 PF03050 Transposase IS66 family PF553_12190 PF13817 IS66 C-terminal element PF553_12190 PF13007 Transposase C of IS166 homeodomain PF553_12190 PF13005 zinc-finger binding domain of transposase IS66 PF553_12210 PF02321 Outer membrane efflux protein PF553_12215 PF12399 Branched-chain amino acid ATP-binding cassette transporter PF553_12215 PF00005 ABC transporter PF553_12220 PF03968 OstA-like protein PF553_12235 PF01380 SIS domain PF553_12235 PF00571 CBS domain PF553_12240 PF01406 tRNA synthetases class I (C) catalytic domain PF553_12240 PF09190 DALR domain PF553_12265 PF01638 HxlR-like helix-turn-helix PF553_12270 PF07690 Major Facilitator Superfamily PF553_12295 PF03807 NADP oxidoreductase coenzyme F420-dependent PF553_12295 PF14748 Pyrroline-5-carboxylate reductase dimerisation PF553_12305 PF00313 'Cold-shock' DNA-binding domain PF553_12310 PF01810 LysE type translocator PF553_12340 PF02601 Exonuclease VII, large subunit PF553_12340 PF13742 OB-fold nucleic acid binding domain PF553_12375 PF00376 MerR family regulatory protein PF553_12375 PF09278 MerR, DNA binding PF553_12380 PF00403 Heavy-metal-associated domain PF553_12390 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family PF553_12390 PF03466 LysR substrate binding domain PF553_12400 PF00355 Rieske [2Fe-2S] domain PF553_12400 PF00848 Ring hydroxylating alpha subunit (catalytic domain) PF553_12405 PF00866 Ring hydroxylating beta subunit PF553_12410 PF00970 Oxidoreductase FAD-binding domain PF553_12410 PF00111 2Fe-2S iron-sulfur cluster binding domain PF553_12410 PF00175 Oxidoreductase NAD-binding domain PF553_12415 PF00106 short chain dehydrogenase PF553_12420 PF03594 Benzoate membrane transport protein PF553_12425 PF07690 Major Facilitator Superfamily PF553_12435 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III PF553_12435 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal PF553_12440 PF04408 Helicase associated domain (HA2) PF553_12440 PF00271 Helicase conserved C-terminal domain PF553_12440 PF00270 DEAD/DEAH box helicase PF553_12440 PF11898 Domain of unknown function (DUF3418) PF553_12440 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold PF553_12445 PF00578 AhpC/TSA family PF553_12445 PF10417 C-terminal domain of 1-Cys peroxiredoxin PF553_12465 PF07992 Pyridine nucleotide-disulphide oxidoreductase PF553_12465 PF13192 Thioredoxin domain PF553_12475 PF00043 Glutathione S-transferase, C-terminal domain PF553_12475 PF02798 Glutathione S-transferase, N-terminal domain PF553_12485 PF02390 Putative methyltransferase PF553_12490 PF13417 Glutathione S-transferase, N-terminal domain PF553_12490 PF00043 Glutathione S-transferase, C-terminal domain PF553_12500 PF00691 OmpA family PF553_12500 PF13488 Glycine zipper PF553_12505 PF01979 Amidohydrolase family PF553_12510 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain PF553_12510 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain PF553_12520 PF10672 S-adenosylmethionine-dependent methyltransferase PF553_12520 PF02926 THUMP domain PF553_12520 PF01170 Putative RNA methylase family UPF0020 PF553_12535 PF10431 C-terminal, D2-small domain, of ClpB protein PF553_12535 PF17871 AAA lid domain PF553_12535 PF02861 Clp amino terminal domain, pathogenicity island component PF553_12535 PF07724 AAA domain (Cdc48 subfamily) PF553_12535 PF00004 ATPase family associated with various cellular activities (AAA) PF553_12550 PF02566 OsmC-like protein PF553_12560 PF00027 Cyclic nucleotide-binding domain PF553_12560 PF13545 Crp-like helix-turn-helix domain PF553_12565 PF00248 Aldo/keto reductase family PF553_12580 PF00709 Adenylosuccinate synthetase PF553_12585 PF13393 Histidyl-tRNA synthetase PF553_12595 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain PF553_12595 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain PF553_12600 PF01411 tRNA synthetases class II (A) PF553_12600 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain PF553_12600 PF02272 DHHA1 domain PF553_12605 PF13356 Arm DNA-binding domain PF553_12605 PF00589 Phage integrase family PF553_12610 PF00717 Peptidase S24-like PF553_12615 PF11799 impB/mucB/samB family C-terminal domain PF553_12615 PF00817 impB/mucB/samB family PF553_12615 PF13438 Domain of unknown function (DUF4113) PF553_12620 PF13737 Transposase DDE domain PF553_12675 PF13737 Transposase DDE domain PF553_12715 PF01695 IstB-like ATP binding protein PF553_12745 PF15943 Putative antitoxin of bacterial toxin-antitoxin system, YdaS/YdaT PF553_12750 PF01726 LexA DNA binding domain PF553_12750 PF00717 Peptidase S24-like PF553_12805 PF01842 ACT domain PF553_12805 PF13840 ACT domain PF553_12805 PF00696 Amino acid kinase family PF553_12810 PF02599 Global regulator protein family PF553_12815 PF01351 Ribonuclease HII PF553_12825 PF01292 Prokaryotic cytochrome b561 PF553_12830 PF00962 Adenosine/AMP deaminase PF553_12835 PF00860 Permease family PF553_12845 PF00743 Flavin-binding monooxygenase-like PF553_12850 PF00106 short chain dehydrogenase PF553_12860 PF02678 Pirin PF553_12860 PF17954 Quercetinase C-terminal cupin domain PF553_12865 PF17932 Tetracyclin repressor-like, C-terminal domain PF553_12865 PF00440 Bacterial regulatory proteins, tetR family PF553_12875 PF00106 short chain dehydrogenase PF553_12880 PF00743 Flavin-binding monooxygenase-like PF553_12885 PF04072 Leucine carboxyl methyltransferase PF553_12890 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term PF553_12890 PF12833 Helix-turn-helix domain PF553_12895 PF00743 Flavin-binding monooxygenase-like PF553_12900 PF00106 short chain dehydrogenase PF553_12905 PF07859 alpha/beta hydrolase fold PF553_12910 PF05199 GMC oxidoreductase PF553_12915 PF03573 outer membrane porin, OprD family PF553_12920 PF07690 Major Facilitator Superfamily PF553_12925 PF00884 Sulfatase PF553_12930 PF03781 Sulfatase-modifying factor enzyme 1 PF553_12940 PF00355 Rieske [2Fe-2S] domain PF553_12945 PF00111 2Fe-2S iron-sulfur cluster binding domain PF553_12945 PF00175 Oxidoreductase NAD-binding domain PF553_12960 PF07690 Major Facilitator Superfamily PF553_12965 PF00378 Enoyl-CoA hydratase/isomerase PF553_12970 PF00171 Aldehyde dehydrogenase family PF553_12980 PF02771 Acyl-CoA dehydrogenase, N-terminal domain PF553_12980 PF02770 Acyl-CoA dehydrogenase, middle domain PF553_12980 PF00441 Acyl-CoA dehydrogenase, C-terminal domain PF553_12985 PF03573 outer membrane porin, OprD family PF553_13000 PF07519 Tannase and feruloyl esterase PF553_13005 PF00392 Bacterial regulatory proteins, gntR family PF553_13005 PF07729 FCD domain PF553_13010 PF00171 Aldehyde dehydrogenase family PF553_13015 PF00701 Dihydrodipicolinate synthetase family PF553_13020 PF13378 Enolase C-terminal domain-like PF553_13025 PF07690 Major Facilitator Superfamily PF553_13030 PF04295 D-galactarate dehydratase / Altronate hydrolase, C terminus PF553_13030 PF08666 SAF domain PF553_13035 PF00892 EamA-like transporter family PF553_13040 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term PF553_13040 PF12833 Helix-turn-helix domain PF553_13045 PF00171 Aldehyde dehydrogenase family PF553_13050 PF00324 Amino acid permease PF553_13055 PF04958 Arginine N-succinyltransferase beta subunit PF553_13060 PF00202 Aminotransferase class-III PF553_13070 PF00171 Aldehyde dehydrogenase family PF553_13080 PF00392 Bacterial regulatory proteins, gntR family PF553_13080 PF07729 FCD domain PF553_13090 PF00324 Amino acid permease PF553_13095 PF01266 FAD dependent oxidoreductase PF553_13100 PF00324 Amino acid permease PF553_13110 PF05643 Putative bacterial lipoprotein (DUF799) PF553_13120 PF03783 Curli production assembly/transport component CsgG PF553_13145 PF05987 Bacterial protein of unknown function (DUF898) PF553_13160 PF07992 Pyridine nucleotide-disulphide oxidoreductase PF553_13160 PF00724 NADH:flavin oxidoreductase / NADH oxidase family PF553_13165 PF00764 Arginosuccinate synthase PF553_13185 PF01979 Amidohydrolase family PF553_13190 PF00929 Exonuclease PF553_13200 PF07715 TonB-dependent Receptor Plug Domain PF553_13200 PF00593 TonB dependent receptor PF553_13205 PF00724 NADH:flavin oxidoreductase / NADH oxidase family PF553_13205 PF07992 Pyridine nucleotide-disulphide oxidoreductase PF553_13210 PF08352 Oligopeptide/dipeptide transporter, C-terminal region PF553_13210 PF00005 ABC transporter PF553_13215 PF12911 N-terminal TM domain of oligopeptide transport permease C PF553_13215 PF00528 Binding-protein-dependent transport system inner membrane component PF553_13220 PF00528 Binding-protein-dependent transport system inner membrane component PF553_13225 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle PF553_13230 PF01476 LysM domain PF553_13230 PF01464 Transglycosylase SLT domain PF553_13230 PF01476 LysM domain PF553_13230 PF01464 Transglycosylase SLT domain PF553_13235 PF00929 Exonuclease PF553_13245 PF09297 NADH pyrophosphatase zinc ribbon domain PF553_13245 PF00293 NUDIX domain PF553_13255 PF04972 BON domain PF553_13260 PF02021 Uncharacterised protein family UPF0102 PF553_13265 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases PF553_13275 PF03466 LysR substrate binding domain PF553_13275 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family PF553_13280 PF01810 LysE type translocator PF553_13290 PF13411 MerR HTH family regulatory protein PF553_13300 PF01494 FAD binding domain PF553_13305 PF01494 FAD binding domain PF553_13310 PF05195 Aminopeptidase P, N-terminal domain PF553_13310 PF00557 Metallopeptidase family M24 PF553_13345 PF00884 Sulfatase PF553_13345 PF08019 Phosphoethanolamine transferase EptA/EptB PF553_13410 PF03869 Arc-like DNA binding domain PF553_13425 PF13005 zinc-finger binding domain of transposase IS66 PF553_13425 PF13007 Transposase C of IS166 homeodomain PF553_13425 PF13817 IS66 C-terminal element PF553_13425 PF03050 Transposase IS66 family PF553_13615 PF10548 P22AR C-terminal domain PF553_13615 PF02498 BRO family, N-terminal domain PF553_13770 PF00117 Glutamine amidotransferase class-I PF553_13775 PF11838 ERAP1-like C-terminal domain PF553_13775 PF01433 Peptidase family M1 domain PF553_13780 PF00593 TonB dependent receptor PF553_13780 PF07715 TonB-dependent Receptor Plug Domain PF553_13785 PF02885 Glycosyl transferase family, helical bundle domain PF553_13785 PF00591 Glycosyl transferase family, a/b domain PF553_13790 PF00218 Indole-3-glycerol phosphate synthase PF553_13805 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain PF553_13805 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase PF553_13810 PF01799 [2Fe-2S] binding domain PF553_13810 PF00111 2Fe-2S iron-sulfur cluster binding domain PF553_13815 PF01227 GTP cyclohydrolase I PF553_13825 PF00144 Beta-lactamase PF553_13835 PF13817 IS66 C-terminal element PF553_13835 PF13007 Transposase C of IS166 homeodomain PF553_13835 PF03050 Transposase IS66 family PF553_13835 PF13005 zinc-finger binding domain of transposase IS66 PF553_13860 PF05675 Protein of unknown function (DUF817) PF553_13865 PF01208 Uroporphyrinogen decarboxylase (URO-D) PF553_13875 PF00425 chorismate binding enzyme PF553_13880 PF01648 4'-phosphopantetheinyl transferase superfamily PF553_13880 PF17837 4'-phosphopantetheinyl transferase N-terminal domain PF553_13885 PF00975 Thioesterase domain PF553_13890 PF00005 ABC transporter PF553_13895 PF00005 ABC transporter PF553_13895 PF00664 ABC transporter transmembrane region PF553_13900 PF00282 Pyridoxal-dependent decarboxylase conserved domain PF553_13905 PF00550 Phosphopantetheine attachment site PF553_13905 PF00857 Isochorismatase family PF553_13910 PF13193 AMP-binding enzyme C-terminal domain PF553_13910 PF00501 AMP-binding enzyme PF553_13915 PF00668 Condensation domain PF553_13915 PF00501 AMP-binding enzyme PF553_13915 PF00550 Phosphopantetheine attachment site PF553_13920 PF13434 L-lysine 6-monooxygenase (NADPH-requiring) PF553_13925 PF07715 TonB-dependent Receptor Plug Domain PF553_13925 PF00593 TonB dependent receptor PF553_13930 PF01497 Periplasmic binding protein PF553_13935 PF00005 ABC transporter PF553_13940 PF01032 FecCD transport family PF553_13945 PF01032 FecCD transport family PF553_13950 PF00975 Thioesterase domain PF553_13950 PF00501 AMP-binding enzyme PF553_13950 PF00550 Phosphopantetheine attachment site PF553_13950 PF00668 Condensation domain PF553_13950 PF13193 AMP-binding enzyme C-terminal domain PF553_13955 PF00550 Phosphopantetheine attachment site PF553_13955 PF00668 Condensation domain PF553_13955 PF13193 AMP-binding enzyme C-terminal domain PF553_13955 PF00501 AMP-binding enzyme PF553_13965 PF13309 HTH domain PF553_13965 PF08348 YheO-like PAS domain PF553_13970 PF00291 Pyridoxal-phosphate dependent enzyme PF553_13975 PF02678 Pirin PF553_13975 PF17954 Quercetinase C-terminal cupin domain PF553_13995 PF00440 Bacterial regulatory proteins, tetR family PF553_14005 PF13005 zinc-finger binding domain of transposase IS66 PF553_14005 PF13007 Transposase C of IS166 homeodomain PF553_14005 PF13817 IS66 C-terminal element PF553_14005 PF03050 Transposase IS66 family PF553_14025 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain PF553_14025 PF13378 Enolase C-terminal domain-like PF553_14030 PF00083 Sugar (and other) transporter PF553_14035 PF02604 Antitoxin Phd_YefM, type II toxin-antitoxin system PF553_14045 PF00892 EamA-like transporter family PF553_14065 PF01266 FAD dependent oxidoreductase PF553_14065 PF05430 S-adenosyl-L-methionine-dependent methyltransferase PF553_14070 PF07992 Pyridine nucleotide-disulphide oxidoreductase PF553_14070 PF18113 Rubredoxin binding C-terminal domain PF553_14080 PF00171 Aldehyde dehydrogenase family PF553_14085 PF00355 Rieske [2Fe-2S] domain PF553_14085 PF00848 Ring hydroxylating alpha subunit (catalytic domain) PF553_14090 PF02028 BCCT, betaine/carnitine/choline family transporter PF553_14095 PF00083 Sugar (and other) transporter PF553_14100 PF00557 Metallopeptidase family M24 PF553_14105 PF00724 NADH:flavin oxidoreductase / NADH oxidase family PF553_14110 PF03466 LysR substrate binding domain PF553_14110 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family PF553_14115 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term PF553_14115 PF12833 Helix-turn-helix domain PF553_14120 PF01370 NAD dependent epimerase/dehydratase family PF553_14130 PF00561 alpha/beta hydrolase fold PF553_14135 PF00743 Flavin-binding monooxygenase-like PF553_14145 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family PF553_14145 PF03466 LysR substrate binding domain PF553_14150 PF00857 Isochorismatase family PF553_14200 PF04328 Selenoprotein, putative PF553_14205 PF02554 Carbon starvation protein CstA PF553_14205 PF13722 5TM C-terminal transporter carbon starvation CstA PF553_14210 PF01132 Elongation factor P (EF-P) OB domain PF553_14210 PF08207 Elongation factor P (EF-P) KOW-like domain PF553_14210 PF09285 Elongation factor P, C-terminal PF553_14215 PF04055 Radical SAM superfamily PF553_14225 PF12792 CSS motif domain associated with EAL PF553_14225 PF00563 EAL domain PF553_14230 PF01197 Ribosomal protein L31 PF553_14235 PF13593 SBF-like CPA transporter family (DUF4137) PF553_14240 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily PF553_14245 PF07690 Major Facilitator Superfamily PF553_14250 PF13654 AAA domain PF553_14250 PF05362 Lon protease (S16) C-terminal proteolytic domain PF553_14255 PF03466 LysR substrate binding domain PF553_14255 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family PF553_14260 PF01476 LysM domain PF553_14260 PF01551 Peptidase family M23 PF553_14265 PF01975 Survival protein SurE PF553_14280 PF07943 Penicillin-binding protein 5, C-terminal domain PF553_14280 PF00768 D-alanyl-D-alanine carboxypeptidase PF553_14285 PF00132 Bacterial transferase hexapeptide (six repeats) PF553_14290 PF00293 NUDIX domain PF553_14290 PF13344 Haloacid dehalogenase-like hydrolase PF553_14300 PF04356 Protein of unknown function (DUF489) PF553_14305 PF08328 Adenylosuccinate lyase C-terminal PF553_14305 PF00206 Lyase PF553_14320 PF01343 Peptidase family S49 PF553_14320 PF08496 Peptidase family S49 N-terminal PF553_14325 PF00005 ABC transporter PF553_14330 PF00528 Binding-protein-dependent transport system inner membrane component PF553_14335 PF00528 Binding-protein-dependent transport system inner membrane component PF553_14340 PF12849 PBP superfamily domain PF553_14345 PF00324 Amino acid permease PF553_14350 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain PF553_14350 PF00205 Thiamine pyrophosphate enzyme, central domain PF553_14350 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain PF553_14355 PF01037 Lrp/AsnC ligand binding domain PF553_14360 PF00171 Aldehyde dehydrogenase family PF553_14365 PF00282 Pyridoxal-dependent decarboxylase conserved domain PF553_14370 PF00202 Aminotransferase class-III PF553_14385 PF02525 Flavodoxin-like fold PF553_14390 PF00487 Fatty acid desaturase PF553_14395 PF00970 Oxidoreductase FAD-binding domain PF553_14395 PF00175 Oxidoreductase NAD-binding domain PF553_14395 PF00111 2Fe-2S iron-sulfur cluster binding domain PF553_14400 PF00440 Bacterial regulatory proteins, tetR family PF553_14410 PF00271 Helicase conserved C-terminal domain PF553_14410 PF12137 RNA polymerase recycling family C-terminal PF553_14410 PF00176 SNF2 family N-terminal domain PF553_14410 PF18339 RapA N-terminal Tudor like domain 1 PF553_14410 PF18337 RapA N-terminal Tudor like domain PF553_14415 PF00849 RNA pseudouridylate synthase PF553_14425 PF00202 Aminotransferase class-III PF553_14430 PF02581 Thiamine monophosphate synthase PF553_14450 PF13007 Transposase C of IS166 homeodomain PF553_14450 PF03050 Transposase IS66 family PF553_14450 PF13005 zinc-finger binding domain of transposase IS66 PF553_14450 PF13817 IS66 C-terminal element PF553_14475 PF00675 Insulinase (Peptidase family M16) PF553_14475 PF05193 Peptidase M16 inactive domain PF553_14480 PF02567 Phenazine biosynthesis-like protein PF553_14485 PF00375 Sodium:dicarboxylate symporter family PF553_14490 PF03466 LysR substrate binding domain PF553_14490 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family PF553_14495 PF06779 Uncharacterised MFS-type transporter YbfB PF553_14515 PF00180 Isocitrate/isopropylmalate dehydrogenase PF553_14520 PF00849 RNA pseudouridylate synthase PF553_14525 PF03971 Monomeric isocitrate dehydrogenase PF553_14535 PF00768 D-alanyl-D-alanine carboxypeptidase PF553_14535 PF07943 Penicillin-binding protein 5, C-terminal domain PF553_14540 PF07992 Pyridine nucleotide-disulphide oxidoreductase PF553_14545 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase PF553_14550 PF03441 FAD binding domain of DNA photolyase PF553_14550 PF00875 DNA photolyase PF553_14580 PF02350 UDP-N-acetylglucosamine 2-epimerase PF553_14595 PF03060 Nitronate monooxygenase PF553_14600 PF01207 Dihydrouridine synthase (Dus) PF553_14605 PF07759 Protein of unknown function (DUF1615) PF553_14615 PF01472 PUA domain PF553_14615 PF00696 Amino acid kinase family PF553_14620 PF01018 GTP1/OBG PF553_14620 PF01926 50S ribosome-binding GTPase PF553_14635 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain PF553_14635 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain PF553_14640 PF00892 EamA-like transporter family PF553_14650 PF17757 UvrB interaction domain PF553_14650 PF02151 UvrB/uvrC motif PF553_14650 PF00271 Helicase conserved C-terminal domain PF553_14650 PF12344 Ultra-violet resistance protein B PF553_14650 PF04851 Type III restriction enzyme, res subunit PF553_14660 PF17151 Periplasmic sensor domain PF553_14660 PF00990 Diguanylate cyclase, GGDEF domain PF553_14670 PF00155 Aminotransferase class I and II PF553_14680 PF00012 Hsp70 protein PF553_14710 PF00106 short chain dehydrogenase PF553_14715 PF06175 tRNA-(MS[2]IO[6]A)-hydroxylase (MiaE) PF553_14720 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ PF553_14725 PF02565 Recombination protein O C terminal PF553_14725 PF11967 Recombination protein O N terminal PF553_14735 PF07650 KH domain PF553_14735 PF01926 50S ribosome-binding GTPase PF553_14740 PF00035 Double-stranded RNA binding motif PF553_14740 PF14622 Ribonuclease-III-like PF553_14750 PF10502 Signal peptidase, peptidase S26 PF553_14755 PF00679 Elongation factor G C-terminus PF553_14755 PF00009 Elongation factor Tu GTP binding domain PF553_14755 PF03144 Elongation factor Tu domain 2 PF553_14755 PF06421 GTP-binding protein LepA C-terminus PF553_14765 PF13180 PDZ domain PF553_14770 PF00890 FAD binding domain PF553_14770 PF02910 Fumarate reductase flavoprotein C-term PF553_14780 PF02223 Thymidylate kinase PF553_14785 PF02618 YceG-like family PF553_14790 PF01063 Amino-transferase class IV PF553_14805 PF00528 Binding-protein-dependent transport system inner membrane component PF553_14810 PF00528 Binding-protein-dependent transport system inner membrane component PF553_14815 PF00005 ABC transporter PF553_14815 PF12857 TOBE-like domain PF553_14820 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family PF553_14820 PF03466 LysR substrate binding domain PF553_14830 PF00132 Bacterial transferase hexapeptide (six repeats) PF553_14830 PF14602 Hexapeptide repeat of succinyl-transferase PF553_14830 PF14805 Tetrahydrodipicolinate N-succinyltransferase N-terminal PF553_14840 PF06508 Queuosine biosynthesis protein QueC PF553_14855 PF00578 AhpC/TSA family PF553_14865 PF01467 Cytidylyltransferase-like PF553_14865 PF00293 NUDIX domain PF553_14870 PF00378 Enoyl-CoA hydratase/isomerase PF553_14875 PF01784 NIF3 (NGG1p interacting factor 3) PF553_14885 PF07690 Major Facilitator Superfamily PF553_14890 PF02769 AIR synthase related protein, C-terminal domain PF553_14890 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain PF553_14890 PF18076 Formylglycinamide ribonucleotide amidotransferase N-terminal PF553_14895 PF01966 HD domain PF553_14900 PF07499 RuvA, C-terminal domain PF553_14900 PF01330 RuvA N terminal domain PF553_14905 PF05496 Holliday junction DNA helicase RuvB P-loop domain PF553_14905 PF17864 RuvB AAA lid domain PF553_14905 PF05491 RuvB C-terminal winged helix domain PF553_14910 PF01546 Peptidase family M20/M25/M40 PF553_14910 PF07687 Peptidase dimerisation domain PF553_14915 PF03061 Thioesterase superfamily PF553_14920 PF01618 MotA/TolQ/ExbB proton channel family PF553_14925 PF02472 Biopolymer transport protein ExbD/TolR PF553_14935 PF07676 WD40-like Beta Propeller Repeat PF553_14935 PF04052 TolB amino-terminal domain PF553_14940 PF00691 OmpA family PF553_14950 PF00316 Fructose-1-6-bisphosphatase, N-terminal domain PF553_14955 PF00588 SpoU rRNA Methylase family PF553_14955 PF08032 RNA 2'-O ribose methyltransferase substrate binding PF553_14985 PF13005 zinc-finger binding domain of transposase IS66 PF553_14985 PF13817 IS66 C-terminal element PF553_14985 PF03050 Transposase IS66 family PF553_14985 PF13007 Transposase C of IS166 homeodomain PF553_15000 PF00308 Bacterial dnaA protein PF553_15000 PF11638 DnaA N-terminal domain PF553_15000 PF08299 Bacterial dnaA protein helix-turn-helix PF553_15005 PF01594 AI-2E family transporter PF553_15010 PF00586 AIR synthase related protein, N-terminal domain PF553_15010 PF02769 AIR synthase related protein, C-terminal domain PF553_15015 PF00551 Formyl transferase PF553_15020 PF12697 Alpha/beta hydrolase family PF553_15025 PF01343 Peptidase family S49 PF553_15025 PF06965 Na+/H+ antiporter 1 PF553_15035 PF03772 Competence protein PF553_15035 PF13567 Domain of unknown function (DUF4131) PF553_15035 PF00753 Metallo-beta-lactamase superfamily PF553_15040 PF00005 ABC transporter PF553_15045 PF12704 MacB-like periplasmic core domain PF553_15045 PF02687 FtsX-like permease family PF553_15055 PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 PF553_15070 PF00266 Aminotransferase class-V PF553_15080 PF13533 Biotin-lipoyl like PF553_15100 PF00535 Glycosyl transferase family 2 PF553_15115 PF03989 DNA gyrase C-terminal domain, beta-propeller PF553_15115 PF00521 DNA gyrase/topoisomerase IV, subunit A PF553_15120 PF01012 Electron transfer flavoprotein domain PF553_15120 PF00766 Electron transfer flavoprotein FAD-binding domain PF553_15125 PF01012 Electron transfer flavoprotein domain PF553_15130 PF00589 Phage integrase family PF553_15130 PF02899 Phage integrase, N-terminal SAM-like domain PF553_15135 PF01810 LysE type translocator PF553_15140 PF01678 Diaminopimelate epimerase PF553_15145 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain PF553_15145 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain PF553_15155 PF00324 Amino acid permease PF553_15160 PF18073 Rubredoxin metal binding domain PF553_15170 PF00152 tRNA synthetases class II (D, K and N) PF553_15175 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain PF553_15175 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain PF553_15175 PF11890 Domain of unknown function (DUF3410) PF553_15180 PF06803 Protein of unknown function (DUF1232) PF553_15185 PF02634 FdhD/NarQ family PF553_15190 PF00384 Molybdopterin oxidoreductase PF553_15195 PF02595 Glycerate kinase family PF553_15210 PF00881 Nitroreductase family PF553_15230 PF09857 Putative toxin of bacterial toxin-antitoxin pair PF553_15255 PF03449 Transcription elongation factor, N-terminal PF553_15255 PF01272 Transcription elongation factor, GreA/GreB, C-term PF553_15260 PF01464 Transglycosylase SLT domain PF553_15260 PF00497 Bacterial extracellular solute-binding proteins, family 3 PF553_15270 PF01171 PP-loop family PF553_15275 PF01464 Transglycosylase SLT domain PF553_15280 PF01435 Peptidase family M48 PF553_15290 PF00873 AcrB/AcrD/AcrF family PF553_15295 PF03009 Glycerophosphoryl diester phosphodiesterase family PF553_15300 PF00753 Metallo-beta-lactamase superfamily PF553_15305 PF01219 Prokaryotic diacylglycerol kinase PF553_15310 PF00118 TCP-1/cpn60 chaperonin family PF553_15315 PF00166 Chaperonin 10 Kd subunit PF553_15325 PF00149 Calcineurin-like phosphoesterase PF553_15330 PF00781 Diacylglycerol kinase catalytic domain PF553_15335 PF17297 Phosphoenolpyruvate carboxykinase N-terminal domain PF553_15335 PF00821 Phosphoenolpyruvate carboxykinase C-terminal P-loop domain PF553_15340 PF01266 FAD dependent oxidoreductase PF553_15340 PF16901 C-terminal domain of alpha-glycerophosphate oxidase PF553_15345 PF02782 FGGY family of carbohydrate kinases, C-terminal domain PF553_15345 PF00370 FGGY family of carbohydrate kinases, N-terminal domain PF553_15350 PF00083 Sugar (and other) transporter PF553_15365 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain PF553_15365 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain PF553_15380 PF09423 PhoD-like phosphatase PF553_15380 PF16655 PhoD-like phosphatase, N-terminal domain PF553_15400 PF00809 Pterin binding enzyme PF553_15405 PF17862 AAA+ lid domain PF553_15405 PF01434 Peptidase family M41 PF553_15405 PF06480 FtsH Extracellular PF553_15405 PF00004 ATPase family associated with various cellular activities (AAA) PF553_15410 PF01728 FtsJ-like methyltransferase PF553_15415 PF01985 CRS1 / YhbY (CRM) domain PF553_15430 PF00117 Glutamine amidotransferase class-I PF553_15430 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain PF553_15435 PF02142 MGS-like domain PF553_15435 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain PF553_15435 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain PF553_15440 PF03449 Transcription elongation factor, N-terminal PF553_15440 PF01272 Transcription elongation factor, GreA/GreB, C-term PF553_15445 PF00132 Bacterial transferase hexapeptide (six repeats) PF553_15450 PF00582 Universal stress protein family PF553_15455 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain PF553_15465 PF09587 Bacterial capsule synthesis protein PGA_cap PF553_15480 PF00999 Sodium/hydrogen exchanger family PF553_15485 PF04228 Putative neutral zinc metallopeptidase PF553_15490 PF05661 Protein of unknown function (DUF808) PF553_15495 PF00579 tRNA synthetases class I (W and Y) PF553_15500 PF02629 CoA binding domain PF553_15500 PF00549 CoA-ligase PF553_15505 PF00549 CoA-ligase PF553_15505 PF08442 ATP-grasp domain PF553_15510 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain PF553_15510 PF07992 Pyridine nucleotide-disulphide oxidoreductase PF553_15515 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) PF553_15515 PF00364 Biotin-requiring enzyme PF553_15515 PF02817 e3 binding domain PF553_15520 PF16078 2-oxoglutarate dehydrogenase N-terminus PF553_15520 PF00676 Dehydrogenase E1 component PF553_15520 PF02779 Transketolase, pyrimidine binding domain PF553_15520 PF16870 2-oxoglutarate dehydrogenase C-terminal PF553_15535 PF13085 2Fe-2S iron-sulfur cluster binding domain PF553_15540 PF02910 Fumarate reductase flavoprotein C-term PF553_15540 PF00890 FAD binding domain PF553_15545 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit PF553_15550 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit PF553_15555 PF00285 Citrate synthase, C-terminal domain PF553_15565 PF17773 UPF0176 acylphosphatase like domain PF553_15565 PF00581 Rhodanese-like domain PF553_15585 PF04546 Sigma-70, non-essential region PF553_15585 PF04539 Sigma-70 region 3 PF553_15585 PF04545 Sigma-70, region 4 PF553_15585 PF00140 Sigma-70 factor, region 1.2 PF553_15585 PF03979 Sigma-70 factor, region 1.1 PF553_15585 PF04542 Sigma-70 region 2 PF553_15590 PF04359 Protein of unknown function (DUF493) PF553_15595 PF03099 Biotin/lipoate A/B protein ligase family PF553_15605 PF00465 Iron-containing alcohol dehydrogenase PF553_15610 PF13520 Amino acid permease PF553_15615 PF03358 NADPH-dependent FMN reductase PF553_15620 PF01638 HxlR-like helix-turn-helix PF553_15625 PF00588 SpoU rRNA Methylase family PF553_15630 PF10414 Sirohaem synthase dimerisation region PF553_15630 PF14824 Sirohaem biosynthesis protein central PF553_15630 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases PF553_15635 PF02403 Seryl-tRNA synthetase N-terminal domain PF553_15635 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) PF553_15645 PF03548 Outer membrane lipoprotein carrier protein LolA PF553_15650 PF01016 Ribosomal L27 protein PF553_15655 PF00829 Ribosomal prokaryotic L21 protein PF553_15665 PF00348 Polyprenyl synthetase PF553_15675 PF01569 PAP2 superfamily PF553_15680 PF00529 HlyD membrane-fusion protein of T1SS PF553_15680 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion PF553_15685 PF00873 AcrB/AcrD/AcrF family PF553_15690 PF02321 Outer membrane efflux protein PF553_15695 PF01906 Putative heavy-metal-binding PF553_15700 PF01906 Putative heavy-metal-binding PF553_15720 PF08264 Anticodon-binding domain of tRNA PF553_15720 PF00133 tRNA synthetases class I (I, L, M and V) PF553_15720 PF10458 Valyl tRNA synthetase tRNA binding arm PF553_15725 PF13649 Methyltransferase domain PF553_15740 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family PF553_15740 PF03466 LysR substrate binding domain PF553_15745 PF00909 Ammonium Transporter Family PF553_15755 PF00512 His Kinase A (phospho-acceptor) domain PF553_15755 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PF553_15755 PF08521 Two-component sensor kinase N-terminal PF553_15760 PF00072 Response regulator receiver domain PF553_15760 PF00486 Transcriptional regulatory protein, C terminal PF553_15780 PF13005 zinc-finger binding domain of transposase IS66 PF553_15780 PF13007 Transposase C of IS166 homeodomain PF553_15780 PF13817 IS66 C-terminal element PF553_15780 PF03050 Transposase IS66 family PF553_15795 PF03050 Transposase IS66 family PF553_15795 PF13007 Transposase C of IS166 homeodomain PF553_15795 PF13005 zinc-finger binding domain of transposase IS66 PF553_15795 PF13817 IS66 C-terminal element PF553_15820 PF01734 Patatin-like phospholipase PF553_15830 PF01145 SPFH domain / Band 7 family PF553_15835 PF04237 YjbR PF553_15840 PF00348 Polyprenyl synthetase PF553_15845 PF04303 PrpF protein PF553_15850 PF00324 Amino acid permease PF553_15885 PF01965 DJ-1/PfpI family PF553_15890 PF16197 Ketoacyl-synthetase C-terminal extension PF553_15890 PF00109 Beta-ketoacyl synthase, N-terminal domain PF553_15890 PF02801 Beta-ketoacyl synthase, C-terminal domain PF553_15890 PF08659 KR domain PF553_15890 PF00550 Phosphopantetheine attachment site PF553_15890 PF08990 Erythronolide synthase docking PF553_15890 PF08240 Alcohol dehydrogenase GroES-like domain PF553_15890 PF00698 Acyl transferase domain PF553_15890 PF09277 Erythronolide synthase, docking PF553_15890 PF14765 Polyketide synthase dehydratase PF553_15895 PF06719 AraC-type transcriptional regulator N-terminus PF553_15895 PF12833 Helix-turn-helix domain PF553_15900 PF02673 Bacitracin resistance protein BacA PF553_15920 PF02525 Flavodoxin-like fold PF553_15935 PF01507 Phosphoadenosine phosphosulfate reductase family PF553_15940 PF03007 Wax ester synthase-like Acyl-CoA acyltransferase domain PF553_15940 PF06974 Protein of unknown function (DUF1298) PF553_15950 PF00575 S1 RNA binding domain PF553_15950 PF10150 Ribonuclease E/G family PF553_15955 PF02545 Maf-like protein PF553_15960 PF04093 rod shape-determining protein MreD PF553_15965 PF04085 rod shape-determining protein MreC PF553_15975 PF02686 Glu-tRNAGln amidotransferase C subunit PF553_15980 PF01425 Amidase PF553_15985 PF02934 GatB/GatE catalytic domain PF553_15985 PF02637 GatB domain PF553_16010 PF05992 SbmA/BacA-like family PF553_16015 PF13291 ACT domain PF553_16015 PF00291 Pyridoxal-phosphate dependent enzyme PF553_16020 PF01734 Patatin-like phospholipase PF553_16025 PF01235 Sodium:alanine symporter family PF553_16040 PF00881 Nitroreductase family PF553_16045 PF07690 Major Facilitator Superfamily PF553_16050 PF12805 FUSC-like inner membrane protein yccS PF553_16060 PF00175 Oxidoreductase NAD-binding domain PF553_16060 PF00258 Flavodoxin PF553_16060 PF00667 FAD binding domain PF553_16100 PF17969 L,D-transpeptidase C-terminal domain PF553_16100 PF03734 L,D-transpeptidase catalytic domain PF553_16105 PF04304 Protein of unknown function (DUF454) PF553_16115 PF08085 Entericidin EcnA/B family PF553_16120 PF07687 Peptidase dimerisation domain PF553_16120 PF01546 Peptidase family M20/M25/M40 PF553_16130 PF01584 CheW-like domain PF553_16130 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PF553_16130 PF01627 Hpt domain PF553_16130 PF00072 Response regulator receiver domain PF553_16135 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain PF553_16135 PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term PF553_16140 PF01584 CheW-like domain PF553_16145 PF00072 Response regulator receiver domain PF553_16150 PF00072 Response regulator receiver domain PF553_16165 PF00873 AcrB/AcrD/AcrF family PF553_16170 PF04073 Aminoacyl-tRNA editing domain PF553_16170 PF03129 Anticodon binding domain PF553_16170 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) PF553_16175 PF07411 Domain of unknown function (DUF1508) PF553_16180 PF03831 PhnA domain PF553_16180 PF08274 PhnA Zinc-Ribbon PF553_16185 PF04343 Protein of unknown function, DUF488 PF553_16195 PF01571 Aminomethyltransferase folate-binding domain PF553_16200 PF10411 Disulfide bond isomerase protein N-terminus PF553_16200 PF13098 Thioredoxin-like domain PF553_16210 PF03547 Membrane transport protein PF553_16215 PF00724 NADH:flavin oxidoreductase / NADH oxidase family PF553_16220 PF07715 TonB-dependent Receptor Plug Domain PF553_16220 PF00593 TonB dependent receptor PF553_16225 PF02245 Methylpurine-DNA glycosylase (MPG) PF553_16230 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain PF553_16230 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain PF553_16230 PF06827 Zinc finger found in FPG and IleRS PF553_16245 PF01741 Large-conductance mechanosensitive channel, MscL PF553_16250 PF00679 Elongation factor G C-terminus PF553_16250 PF00009 Elongation factor Tu GTP binding domain PF553_16250 PF03144 Elongation factor Tu domain 2 PF553_16255 PF00860 Permease family PF553_16260 PF05175 Methyltransferase small domain PF553_16260 PF08468 Methyltransferase small domain N-terminal PF553_16265 PF00324 Amino acid permease PF553_16270 PF01139 tRNA-splicing ligase RtcB PF553_16280 PF13505 Outer membrane protein beta-barrel domain PF553_16280 PF00691 OmpA family PF553_16290 PF02803 Thiolase, C-terminal domain PF553_16290 PF00108 Thiolase, N-terminal domain PF553_16300 PF00893 Small Multidrug Resistance protein PF553_16310 PF01077 Nitrite and sulphite reductase 4Fe-4S domain PF553_16310 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain PF553_16315 PF01011 PQQ enzyme repeat PF553_16320 PF04966 Carbohydrate-selective porin, OprB family PF553_16325 PF02515 CoA-transferase family III PF553_16330 PF02311 AraC-like ligand binding domain PF553_16330 PF12833 Helix-turn-helix domain PF553_16335 PF02803 Thiolase, C-terminal domain PF553_16335 PF00108 Thiolase, N-terminal domain PF553_16340 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain PF553_16340 PF00378 Enoyl-CoA hydratase/isomerase PF553_16340 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain PF553_16365 PF03006 Haemolysin-III related PF553_16370 PF00083 Sugar (and other) transporter PF553_16370 PF07690 Major Facilitator Superfamily PF553_16380 PF07517 SecA DEAD-like domain PF553_16380 PF01043 SecA preprotein cross-linking domain PF553_16380 PF07516 SecA Wing and Scaffold domain PF553_16380 PF02810 SEC-C motif PF553_16385 PF10417 C-terminal domain of 1-Cys peroxiredoxin PF553_16385 PF00578 AhpC/TSA family PF553_16390 PF00753 Metallo-beta-lactamase superfamily PF553_16405 PF08245 Mur ligase middle domain PF553_16405 PF02875 Mur ligase family, glutamate ligase domain PF553_16410 PF01039 Carboxyl transferase domain PF553_16415 PF00290 Tryptophan synthase alpha chain PF553_16440 PF00291 Pyridoxal-phosphate dependent enzyme PF553_16445 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase PF553_16450 PF07715 TonB-dependent Receptor Plug Domain PF553_16450 PF00593 TonB dependent receptor PF553_16455 PF01923 Cobalamin adenosyltransferase PF553_16475 PF02696 Uncharacterized ACR, YdiU/UPF0061 family PF553_16480 PF00072 Response regulator receiver domain PF553_16480 PF00486 Transcriptional regulatory protein, C terminal PF553_16485 PF00512 His Kinase A (phospho-acceptor) domain PF553_16485 PF00672 HAMP domain PF553_16485 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PF553_16495 PF00441 Acyl-CoA dehydrogenase, C-terminal domain PF553_16495 PF12806 Acetyl-CoA dehydrogenase C-terminal like PF553_16495 PF02771 Acyl-CoA dehydrogenase, N-terminal domain PF553_16495 PF02770 Acyl-CoA dehydrogenase, middle domain PF553_16500 PF02771 Acyl-CoA dehydrogenase, N-terminal domain PF553_16500 PF02770 Acyl-CoA dehydrogenase, middle domain PF553_16500 PF12806 Acetyl-CoA dehydrogenase C-terminal like PF553_16500 PF00441 Acyl-CoA dehydrogenase, C-terminal domain PF553_16505 PF06146 Phosphate-starvation-inducible E PF553_16525 PF00593 TonB dependent receptor PF553_16525 PF07715 TonB-dependent Receptor Plug Domain PF553_16535 PF02938 GAD domain PF553_16535 PF00152 tRNA synthetases class II (D, K and N) PF553_16535 PF01336 OB-fold nucleic acid binding domain PF553_16540 PF17101 Stealth protein CR1, conserved region 1 PF553_16540 PF11380 Stealth protein CR2, conserved region 2 PF553_16540 PF17102 Stealth protein CR3, conserved region 3 PF553_16565 PF13439 Glycosyltransferase Family 4 PF553_16565 PF00534 Glycosyl transferases group 1 PF553_16570 PF00535 Glycosyl transferase family 2 PF553_16575 PF01522 Polysaccharide deacetylase PF553_16590 PF01063 Amino-transferase class IV PF553_16595 PF03710 Glutamate-ammonia ligase adenylyltransferase PF553_16595 PF08335 GlnD PII-uridylyltransferase PF553_16600 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PF553_16600 PF07689 KaiB domain PF553_16600 PF00512 His Kinase A (phospho-acceptor) domain PF553_16610 PF02547 Queuosine biosynthesis protein PF553_16625 PF01702 Queuine tRNA-ribosyltransferase PF553_16630 PF02699 Preprotein translocase subunit PF553_16635 PF07549 SecD/SecF GG Motif PF553_16635 PF02355 Protein export membrane protein PF553_16635 PF13721 SecD export protein N-terminal TM region PF553_16640 PF02355 Protein export membrane protein PF553_16640 PF07549 SecD/SecF GG Motif PF553_16645 PF04127 DNA / pantothenate metabolism flavoprotein PF553_16645 PF02441 Flavoprotein PF553_16650 PF04002 RadC-like JAB domain PF553_16655 PF01062 Bestrophin, RFP-TM, chloride channel PF553_16660 PF02811 PHP domain PF553_16665 PF04279 Intracellular septation protein A PF553_16670 PF03795 YCII-related domain PF553_16680 PF01266 FAD dependent oxidoreductase PF553_16680 PF05430 S-adenosyl-L-methionine-dependent methyltransferase PF553_16690 PF04461 Protein of unknown function (DUF520) PF553_16700 PF03061 Thioesterase superfamily PF553_16705 PF00085 Thioredoxin PF553_16710 PF00561 alpha/beta hydrolase fold PF553_16715 PF04273 Putative phosphatase (DUF442) PF553_16715 PF00753 Metallo-beta-lactamase superfamily PF553_16725 PF07992 Pyridine nucleotide-disulphide oxidoreductase PF553_16725 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain PF553_16760 PF17152 Periplasmic sensor domain PF553_16760 PF00990 Diguanylate cyclase, GGDEF domain PF553_16765 PF00691 OmpA family PF553_16765 PF01389 OmpA-like transmembrane domain PF553_16770 PF10518 TAT (twin-arginine translocation) pathway signal sequence PF553_16770 PF00149 Calcineurin-like phosphoesterase PF553_16775 PF13091 PLD-like domain PF553_16785 PF13167 GTP-binding GTPase N-terminal PF553_16785 PF16360 GTP-binding GTPase Middle Region PF553_16785 PF01926 50S ribosome-binding GTPase PF553_16805 PF00149 Calcineurin-like phosphoesterase PF553_16810 PF00398 Ribosomal RNA adenine dimethylase PF553_16815 PF04166 Pyridoxal phosphate biosynthetic protein PdxA PF553_16820 PF00572 Ribosomal protein L13 PF553_16825 PF00380 Ribosomal protein S9/S16 PF553_16830 PF00043 Glutathione S-transferase, C-terminal domain PF553_16830 PF13417 Glutathione S-transferase, N-terminal domain PF553_16835 PF04386 Stringent starvation protein B PF553_16845 PF02785 Biotin carboxylase C-terminal domain PF553_16845 PF00289 Biotin carboxylase, N-terminal domain PF553_16845 PF00364 Biotin-requiring enzyme PF553_16845 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain PF553_16855 PF02771 Acyl-CoA dehydrogenase, N-terminal domain PF553_16855 PF02770 Acyl-CoA dehydrogenase, middle domain PF553_16855 PF00441 Acyl-CoA dehydrogenase, C-terminal domain PF553_16860 PF01039 Carboxyl transferase domain PF553_16875 PF17932 Tetracyclin repressor-like, C-terminal domain PF553_16875 PF00440 Bacterial regulatory proteins, tetR family PF553_16880 PF02770 Acyl-CoA dehydrogenase, middle domain PF553_16880 PF02771 Acyl-CoA dehydrogenase, N-terminal domain PF553_16880 PF00441 Acyl-CoA dehydrogenase, C-terminal domain PF553_16925 PF01066 CDP-alcohol phosphatidyltransferase PF553_16930 PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ PF553_16950 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain PF553_16950 PF00056 lactate/malate dehydrogenase, NAD binding domain PF553_16960 PF01551 Peptidase family M23 PF553_16960 PF10145 Phage-related minor tail protein PF553_16960 PF01464 Transglycosylase SLT domain PF553_16965 PF00919 Uncharacterized protein family UPF0004 PF553_16965 PF04055 Radical SAM superfamily PF553_16965 PF01938 TRAM domain PF553_16970 PF02562 PhoH-like protein PF553_16975 PF02130 Uncharacterized protein family UPF0054 PF553_17000 PF03358 NADPH-dependent FMN reductase PF553_17005 PF03631 Virulence factor BrkB PF553_17010 PF00892 EamA-like transporter family PF553_17015 PF12833 Helix-turn-helix domain PF553_17020 PF01557 Fumarylacetoacetate (FAA) hydrolase family PF553_17070 PF00773 RNB domain PF553_17070 PF17876 Cold shock domain PF553_17070 PF08461 Ribonuclease R winged-helix domain PF553_17070 PF08206 Ribonuclease B OB domain PF553_17070 PF00575 S1 RNA binding domain PF553_17075 PF01432 Peptidase family M3 PF553_17080 PF09526 Probable metal-binding protein (DUF2387) PF553_17110 PF03937 Flavinator of succinate dehydrogenase PF553_17115 PF00441 Acyl-CoA dehydrogenase, C-terminal domain PF553_17115 PF02770 Acyl-CoA dehydrogenase, middle domain PF553_17115 PF02771 Acyl-CoA dehydrogenase, N-terminal domain PF553_17120 PF00743 Flavin-binding monooxygenase-like PF553_17125 PF01196 Ribosomal protein L17 PF553_17130 PF01000 RNA polymerase Rpb3/RpoA insert domain PF553_17130 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain PF553_17130 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain PF553_17135 PF00163 Ribosomal protein S4/S9 N-terminal domain PF553_17135 PF01479 S4 domain PF553_17140 PF00411 Ribosomal protein S11 PF553_17145 PF00416 Ribosomal protein S13/S18 PF553_17150 PF00444 Ribosomal protein L36 PF553_17155 PF00344 SecY translocase PF553_17160 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A PF553_17165 PF00327 Ribosomal protein L30p/L7e PF553_17170 PF00333 Ribosomal protein S5, N-terminal domain PF553_17170 PF03719 Ribosomal protein S5, C-terminal domain PF553_17175 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast PF553_17180 PF00347 Ribosomal protein L6 PF553_17185 PF00410 Ribosomal protein S8 PF553_17190 PF00253 Ribosomal protein S14p/S29e PF553_17195 PF00281 Ribosomal protein L5 PF553_17195 PF00673 ribosomal L5P family C-terminus PF553_17200 PF00467 KOW motif PF553_17200 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 PF553_17205 PF00238 Ribosomal protein L14p/L23e PF553_17210 PF00366 Ribosomal protein S17 PF553_17215 PF00831 Ribosomal L29 protein PF553_17220 PF00252 Ribosomal protein L16p/L10e PF553_17230 PF00237 Ribosomal protein L22p/L17e PF553_17235 PF00203 Ribosomal protein S19 PF553_17240 PF00181 Ribosomal Proteins L2, RNA binding domain PF553_17240 PF03947 Ribosomal Proteins L2, C-terminal domain PF553_17245 PF00276 Ribosomal protein L23 PF553_17250 PF00573 Ribosomal protein L4/L1 family PF553_17255 PF00297 Ribosomal protein L3 PF553_17260 PF00338 Ribosomal protein S10p/S20e PF553_17265 PF00117 Glutamine amidotransferase class-I PF553_17270 PF01053 Cys/Met metabolism PLP-dependent enzyme PF553_17275 PF05872 Bacterial protein of unknown function (DUF853) PF553_17285 PF00970 Oxidoreductase FAD-binding domain PF553_17285 PF00042 Globin PF553_17285 PF00175 Oxidoreductase NAD-binding domain PF553_17290 PF02082 Transcriptional regulator PF553_17295 PF01926 50S ribosome-binding GTPase PF553_17305 PF00375 Sodium:dicarboxylate symporter family PF553_17315 PF01553 Acyltransferase PF553_17330 PF00271 Helicase conserved C-terminal domain PF553_17330 PF17191 RecG wedge domain PF553_17330 PF00270 DEAD/DEAH box helicase PF553_17335 PF00156 Phosphoribosyl transferase domain PF553_17340 PF00293 NUDIX domain PF553_17345 PF03641 Possible lysine decarboxylase PF553_17350 PF01544 CorA-like Mg2+ transporter protein PF553_17360 PF05494 MlaC protein PF553_17370 PF02405 Permease MlaE PF553_17375 PF00005 ABC transporter PF553_17385 PF03880 DbpA RNA binding domain PF553_17385 PF00270 DEAD/DEAH box helicase PF553_17385 PF12343 Cold shock protein DEAD box A PF553_17385 PF00271 Helicase conserved C-terminal domain PF553_17390 PF00459 Inositol monophosphatase family PF553_17395 PF13292 1-deoxy-D-xylulose-5-phosphate synthase PF553_17395 PF02779 Transketolase, pyrimidine binding domain PF553_17395 PF02780 Transketolase, C-terminal domain PF553_17400 PF00925 GTP cyclohydrolase II PF553_17405 PF01218 Coproporphyrinogen III oxidase PF553_17410 PF01488 Shikimate / quinate 5-dehydrogenase PF553_17410 PF08501 Shikimate dehydrogenase substrate binding domain PF553_17410 PF18317 Shikimate 5'-dehydrogenase C-terminal domain PF553_17420 PF12806 Acetyl-CoA dehydrogenase C-terminal like PF553_17420 PF02771 Acyl-CoA dehydrogenase, N-terminal domain PF553_17420 PF00441 Acyl-CoA dehydrogenase, C-terminal domain PF553_17420 PF02770 Acyl-CoA dehydrogenase, middle domain PF553_17430 PF04024 PspC domain PF553_17435 PF00571 CBS domain PF553_17450 PF07690 Major Facilitator Superfamily PF553_17455 PF02091 Glycyl-tRNA synthetase alpha subunit PF553_17460 PF05746 DALR anticodon binding domain PF553_17460 PF02092 Glycyl-tRNA synthetase beta subunit PF553_17470 PF13737 Transposase DDE domain PF553_17490 PF00892 EamA-like transporter family PF553_17495 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family PF553_17495 PF03466 LysR substrate binding domain PF553_17510 PF05922 Peptidase inhibitor I9 PF553_17510 PF00082 Subtilase family PF553_17525 PF04952 Succinylglutamate desuccinylase / Aspartoacylase family PF553_17530 PF04996 Succinylarginine dihydrolase PF553_17535 PF00171 Aldehyde dehydrogenase family PF553_17540 PF04958 Arginine N-succinyltransferase beta subunit PF553_17545 PF00202 Aminotransferase class-III PF553_17550 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase PF553_17550 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain PF553_17555 PF00324 Amino acid permease PF553_17565 PF08241 Methyltransferase domain PF553_17585 PF13614 AAA domain PF553_17590 PF01594 AI-2E family transporter PF553_17595 PF00080 Copper/zinc superoxide dismutase (SODC) PF553_17600 PF12805 FUSC-like inner membrane protein yccS PF553_17605 PF07690 Major Facilitator Superfamily PF553_17615 PF02525 Flavodoxin-like fold PF553_17620 PF03992 Antibiotic biosynthesis monooxygenase PF553_17635 PF02913 FAD linked oxidases, C-terminal domain PF553_17635 PF01565 FAD binding domain PF553_17640 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain PF553_17640 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain PF553_17645 PF00892 EamA-like transporter family PF553_17650 PF00892 EamA-like transporter family PF553_17660 PF01925 Sulfite exporter TauE/SafE PF553_17665 PF09157 Pseudouridine synthase II TruB, C-terminal PF553_17665 PF16198 tRNA pseudouridylate synthase B C-terminal domain PF553_17665 PF01509 TruB family pseudouridylate synthase (N terminal domain) PF553_17670 PF03280 Proteobacterial lipase chaperone protein PF553_17675 PF00561 alpha/beta hydrolase fold PF553_17680 PF01245 Ribosomal protein L19 PF553_17685 PF01746 tRNA (Guanine-1)-methyltransferase PF553_17690 PF05239 PRC-barrel domain PF553_17690 PF01782 RimM N-terminal domain PF553_17695 PF00886 Ribosomal protein S16 PF553_17735 PF02401 LytB protein PF553_17740 PF00625 Guanylate kinase PF553_17745 PF01192 RNA polymerase Rpb6 PF553_17755 PF02824 TGS domain PF553_17755 PF04607 Region found in RelA / SpoT proteins PF553_17755 PF13291 ACT domain PF553_17760 PF01042 Endoribonuclease L-PSP PF553_17765 PF04324 BFD-like [2Fe-2S] binding domain PF553_17770 PF00210 Ferritin-like domain PF553_17775 PF15864 Protein glycosylation ligase PF553_17775 PF04932 O-Antigen ligase PF553_17775 PF11846 Virulence factor membrane-bound polymerase, C-terminal PF553_17785 PF07963 Prokaryotic N-terminal methylation motif PF553_17785 PF00114 Pilin (bacterial filament) PF553_17795 PF04536 TPM domain PF553_17800 PF04011 LemA family PF553_17810 PF07992 Pyridine nucleotide-disulphide oxidoreductase PF553_17810 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster PF553_17815 PF04898 Glutamate synthase central domain PF553_17815 PF00310 Glutamine amidotransferases class-II PF553_17815 PF01645 Conserved region in glutamate synthase PF553_17815 PF01493 GXGXG motif PF553_17825 PF01761 3-dehydroquinate synthase PF553_17830 PF01202 Shikimate kinase PF553_17835 PF11741 AMIN domain PF553_17835 PF00263 Bacterial type II and III secretion system protein PF553_17835 PF03958 Bacterial type II/III secretion system short domain PF553_17835 PF07660 Secretin and TonB N terminus short domain PF553_17845 PF04350 Pilus assembly protein, PilO PF553_17850 PF05137 Fimbrial assembly protein (PilN) PF553_17855 PF11104 Type IV pilus assembly protein PilM; PF553_17860 PF17092 Penicillin-binding protein OB-like domain PF553_17860 PF00912 Transglycosylase PF553_17860 PF00905 Penicillin binding protein transpeptidase domain PF553_17865 PF13847 Methyltransferase domain PF553_17875 PF00953 Glycosyl transferase family 4 PF553_17880 PF01225 Mur ligase family, catalytic domain PF553_17880 PF02875 Mur ligase family, glutamate ligase domain PF553_17880 PF08245 Mur ligase middle domain PF553_17885 PF08245 Mur ligase middle domain PF553_17885 PF02875 Mur ligase family, glutamate ligase domain PF553_17885 PF01225 Mur ligase family, catalytic domain PF553_17890 PF03717 Penicillin-binding Protein dimerisation domain PF553_17890 PF00905 Penicillin binding protein transpeptidase domain PF553_17900 PF01795 MraW methylase family PF553_17915 PF00749 tRNA synthetases class I (E and Q), catalytic domain PF553_17930 PF00324 Amino acid permease PF553_17960 PF01545 Cation efflux family PF553_17965 PF00873 AcrB/AcrD/AcrF family PF553_17970 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion PF553_17970 PF00529 HlyD membrane-fusion protein of T1SS PF553_17995 PF00005 ABC transporter PF553_17995 PF12848 ABC transporter PF553_18000 PF01053 Cys/Met metabolism PLP-dependent enzyme PF553_18005 PF00106 short chain dehydrogenase PF553_18010 PF01740 STAS domain PF553_18010 PF00916 Sulfate permease family PF553_18015 PF17674 HHH domain PF553_18015 PF00575 S1 RNA binding domain PF553_18015 PF16921 Tex protein YqgF-like domain PF553_18015 PF09371 Tex-like protein N-terminal domain PF553_18020 PF00072 Response regulator receiver domain PF553_18020 PF00486 Transcriptional regulatory protein, C terminal PF553_18025 PF00672 HAMP domain PF553_18025 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PF553_18025 PF00512 His Kinase A (phospho-acceptor) domain PF553_18035 PF13336 Acetyl-CoA hydrolase/transferase C-terminal domain PF553_18035 PF02550 Acetyl-CoA hydrolase/transferase N-terminal domain PF553_18040 PF00583 Acetyltransferase (GNAT) family PF553_18060 PF00475 Imidazoleglycerol-phosphate dehydratase PF553_18065 PF00117 Glutamine amidotransferase class-I PF553_18080 PF00977 Histidine biosynthesis protein PF553_18115 PF01636 Phosphotransferase enzyme family PF553_18120 PF00977 Histidine biosynthesis protein PF553_18135 PF00230 Major intrinsic protein PF553_18160 PF02705 K+ potassium transporter PF553_18175 PF02525 Flavodoxin-like fold PF553_18180 PF01638 HxlR-like helix-turn-helix PF553_18205 PF12833 Helix-turn-helix domain PF553_18205 PF02311 AraC-like ligand binding domain PF553_18210 PF00248 Aldo/keto reductase family PF553_18230 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family PF553_18230 PF03466 LysR substrate binding domain PF553_18235 PF07690 Major Facilitator Superfamily PF553_18255 PF01593 Flavin containing amine oxidoreductase PF553_18260 PF05726 Pirin C-terminal cupin domain PF553_18260 PF02678 Pirin PF553_18265 PF00857 Isochorismatase family PF553_18270 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family PF553_18275 PF00171 Aldehyde dehydrogenase family PF553_18280 PF00202 Aminotransferase class-III PF553_18285 PF00392 Bacterial regulatory proteins, gntR family PF553_18285 PF00155 Aminotransferase class I and II PF553_18290 PF00324 Amino acid permease PF553_18300 PF03591 AzlC protein PF553_18310 PF00436 Single-strand binding protein family PF553_18315 PF07690 Major Facilitator Superfamily PF553_18325 PF08543 Phosphomethylpyrimidine kinase PF553_18325 PF03070 TENA/THI-4/PQQC family PF553_18325 PF02581 Thiamine monophosphate synthase PF553_18330 PF06942 GlpM protein PF553_18340 PF08240 Alcohol dehydrogenase GroES-like domain PF553_18340 PF00107 Zinc-binding dehydrogenase PF553_18345 PF16925 Tetracyclin repressor-like, C-terminal domain PF553_18345 PF00440 Bacterial regulatory proteins, tetR family PF553_18350 PF17760 UvrA interaction domain PF553_18350 PF17755 UvrA DNA-binding domain PF553_18355 PF00990 Diguanylate cyclase, GGDEF domain PF553_18365 PF02028 BCCT, betaine/carnitine/choline family transporter PF553_18375 PF00474 Sodium:solute symporter family PF553_18380 PF04341 Protein of unknown function, DUF485 PF553_18385 PF00672 HAMP domain PF553_18385 PF00072 Response regulator receiver domain PF553_18385 PF01627 Hpt domain PF553_18385 PF00512 His Kinase A (phospho-acceptor) domain PF553_18385 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PF553_18395 PF00072 Response regulator receiver domain PF553_18395 PF00196 Bacterial regulatory proteins, luxR family PF553_18400 PF03358 NADPH-dependent FMN reductase PF553_18405 PF00296 Luciferase-like monooxygenase PF553_18410 PF01037 Lrp/AsnC ligand binding domain PF553_18415 PF00857 Isochorismatase family PF553_18420 PF13193 AMP-binding enzyme C-terminal domain PF553_18420 PF00501 AMP-binding enzyme PF553_18420 PF16177 Acetyl-coenzyme A synthetase N-terminus PF553_18430 PF00924 Mechanosensitive ion channel PF553_18435 PF04452 RNA methyltransferase PF553_18440 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) PF553_18445 PF00724 NADH:flavin oxidoreductase / NADH oxidase family PF553_18470 PF17768 RecJ OB domain PF553_18470 PF02272 DHHA1 domain PF553_18470 PF01368 DHH family PF553_18475 PF01243 Pyridoxamine 5'-phosphate oxidase PF553_18475 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region PF553_18480 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I PF553_18480 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain PF553_18480 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II PF553_18480 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III PF553_18485 PF00478 IMP dehydrogenase / GMP reductase domain PF553_18485 PF00571 CBS domain PF553_18490 PF03692 Putative zinc- or iron-chelating domain PF553_18495 PF00258 Flavodoxin PF553_18495 PF01613 Flavin reductase like domain PF553_18500 PF00593 TonB dependent receptor PF553_18500 PF07715 TonB-dependent Receptor Plug Domain PF553_18505 PF01169 Uncharacterized protein family UPF0016 PF553_18515 PF00364 Biotin-requiring enzyme PF553_18515 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) PF553_18515 PF02817 e3 binding domain PF553_18520 PF17831 Pyruvate dehydrogenase E1 component middle domain PF553_18520 PF00456 Transketolase, thiamine diphosphate binding domain PF553_18525 PF01551 Peptidase family M23 PF553_18535 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase PF553_18540 PF12327 FtsZ family, C-terminal domain PF553_18540 PF00091 Tubulin/FtsZ family, GTPase domain PF553_18545 PF02491 SHS2 domain inserted in FTSA PF553_18550 PF03799 Cell division protein FtsQ PF553_18550 PF08478 POTRA domain, FtsQ-type PF553_18555 PF07478 D-ala D-ala ligase C-terminus PF553_18555 PF01820 D-ala D-ala ligase N-terminus PF553_18560 PF01225 Mur ligase family, catalytic domain PF553_18560 PF08245 Mur ligase middle domain PF553_18560 PF02875 Mur ligase family, glutamate ligase domain PF553_18565 PF04101 Glycosyltransferase family 28 C-terminal domain PF553_18565 PF03033 Glycosyltransferase family 28 N-terminal domain PF553_18570 PF02951 Prokaryotic glutathione synthetase, N-terminal domain PF553_18570 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain PF553_18580 PF00593 TonB dependent receptor PF553_18580 PF07715 TonB-dependent Receptor Plug Domain PF553_18590 PF00156 Phosphoribosyl transferase domain PF553_18595 PF03372 Endonuclease/Exonuclease/phosphatase family PF553_18600 PF03960 ArsC family PF553_18610 PF07859 alpha/beta hydrolase fold PF553_18615 PF07694 5TMR of 5TMR-LYT PF553_18615 PF00990 Diguanylate cyclase, GGDEF domain PF553_18620 PF11412 Disulphide bond corrector protein DsbC PF553_18620 PF02683 Cytochrome C biogenesis protein transmembrane region PF553_18650 PF00576 HIUase/Transthyretin family PF553_18655 PF00860 Permease family PF553_18665 PF01494 FAD binding domain PF553_18670 PF03561 Allantoicase repeat PF553_18675 PF04115 Ureidoglycolate lyase PF553_18680 PF00204 DNA gyrase B PF553_18680 PF00986 DNA gyrase B subunit, carboxyl terminus PF553_18680 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PF553_18680 PF01751 Toprim domain PF553_18685 PF05728 Uncharacterised protein family (UPF0227) PF553_18700 PF00182 Chitinase class I PF553_18705 PF13737 Transposase DDE domain PF553_18710 PF10106 Uncharacterized protein conserved in bacteria (DUF2345) PF553_18710 PF04717 Type VI secretion system, phage-baseplate injector PF553_18710 PF13296 Putative type VI secretion system Rhs element Vgr PF553_18715 PF02600 Disulfide bond formation protein DsbB PF553_18720 PF04262 Glutamate-cysteine ligase PF553_18735 PF04286 Protein of unknown function (DUF445) PF553_18740 PF00155 Aminotransferase class I and II PF553_18745 PF01554 MatE PF553_18750 PF00106 short chain dehydrogenase PF553_18760 PF00486 Transcriptional regulatory protein, C terminal PF553_18760 PF00072 Response regulator receiver domain PF553_18765 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PF553_18765 PF00989 PAS fold PF553_18765 PF11808 Phosphate regulon sensor protein PhoR PF553_18765 PF00512 His Kinase A (phospho-acceptor) domain PF553_18775 PF02666 Phosphatidylserine decarboxylase PF553_18780 PF00581 Rhodanese-like domain PF553_18785 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family PF553_18785 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain PF553_18790 PF02580 D-Tyr-tRNA(Tyr) deacylase PF553_18815 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase PF553_18815 PF00925 GTP cyclohydrolase II PF553_18820 PF00885 6,7-dimethyl-8-ribityllumazine synthase PF553_18825 PF01029 NusB family PF553_18830 PF00586 AIR synthase related protein, N-terminal domain PF553_18830 PF02769 AIR synthase related protein, C-terminal domain PF553_18835 PF04608 Phosphatidylglycerophosphatase A PF553_18840 PF14602 Hexapeptide repeat of succinyl-transferase PF553_18840 PF12804 MobA-like NTP transferase domain PF553_18840 PF00132 Bacterial transferase hexapeptide (six repeats) PF553_18845 PF01380 SIS domain PF553_18850 PF01177 Asp/Glu/Hydantoin racemase PF553_18865 PF00491 Arginase family PF553_18870 PF01979 Amidohydrolase family PF553_18875 PF00324 Amino acid permease PF553_18880 PF00221 Aromatic amino acid lyase PF553_18885 PF17391 Urocanase N-terminal domain PF553_18885 PF17392 Urocanase C-terminal domain PF553_18885 PF01175 Urocanase Rossmann-like domain PF553_18890 PF13610 DDE domain PF553_18900 PF01042 Endoribonuclease L-PSP PF553_18905 PF01168 Alanine racemase, N-terminal domain PF553_18905 PF00842 Alanine racemase, C-terminal domain PF553_18910 PF01266 FAD dependent oxidoreductase PF553_18915 PF01037 Lrp/AsnC ligand binding domain PF553_18925 PF07715 TonB-dependent Receptor Plug Domain PF553_18925 PF00593 TonB dependent receptor PF553_18940 PF00849 RNA pseudouridylate synthase PF553_18970 PF04717 Type VI secretion system, phage-baseplate injector PF553_18970 PF10106 Uncharacterized protein conserved in bacteria (DUF2345) PF553_18970 PF13296 Putative type VI secretion system Rhs element Vgr PF553_18980 PF00109 Beta-ketoacyl synthase, N-terminal domain PF553_18980 PF02801 Beta-ketoacyl synthase, C-terminal domain PF553_19010 PF00330 Aconitase family (aconitate hydratase) PF553_19010 PF00694 Aconitase C-terminal domain PF553_19015 PF00285 Citrate synthase, C-terminal domain PF553_19025 PF07729 FCD domain PF553_19025 PF00392 Bacterial regulatory proteins, gntR family PF553_19035 PF00155 Aminotransferase class I and II PF553_19040 PF01565 FAD binding domain PF553_19040 PF09330 D-lactate dehydrogenase, membrane binding PF553_19045 PF01070 FMN-dependent dehydrogenase PF553_19050 PF00392 Bacterial regulatory proteins, gntR family PF553_19050 PF07729 FCD domain PF553_19055 PF02652 L-lactate permease PF553_19060 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain PF553_19060 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III PF553_19060 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II PF553_19060 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I PF553_19065 PF16363 GDP-mannose 4,6 dehydratase PF553_19070 PF00342 Phosphoglucose isomerase PF553_19075 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain PF553_19075 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain PF553_19075 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain PF553_19080 PF00483 Nucleotidyl transferase PF553_19085 PF02397 Bacterial sugar transferase PF553_19090 PF00535 Glycosyl transferase family 2 PF553_19095 PF00534 Glycosyl transferases group 1 PF553_19110 PF00534 Glycosyl transferases group 1 PF553_19110 PF13439 Glycosyltransferase Family 4 PF553_19115 PF00132 Bacterial transferase hexapeptide (six repeats) PF553_19115 PF14602 Hexapeptide repeat of succinyl-transferase PF553_19115 PF12464 Maltose acetyltransferase PF553_19125 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family PF553_19130 PF00132 Bacterial transferase hexapeptide (six repeats) PF553_19135 PF01408 Oxidoreductase family, NAD-binding Rossmann fold PF553_19135 PF02894 Oxidoreductase family, C-terminal alpha/beta domain PF553_19140 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain PF553_19140 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain PF553_19140 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain PF553_19145 PF18412 Outer-membrane lipoprotein Wza C-terminal domain PF553_19145 PF02563 Polysaccharide biosynthesis/export protein PF553_19145 PF10531 SLBB domain PF553_19150 PF01451 Low molecular weight phosphotyrosine protein phosphatase PF553_19155 PF13614 AAA domain PF553_19155 PF02706 Chain length determinant protein PF553_19155 PF13807 G-rich domain on putative tyrosine kinase PF553_19160 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase PF553_19160 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase PF553_19165 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase PF553_19165 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase PF553_19170 PF03023 Lipid II flippase MurJ PF553_19175 PF01510 N-acetylmuramoyl-L-alanine amidase PF553_19180 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain PF553_19180 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain PF553_19200 PF01138 3' exoribonuclease family, domain 1 PF553_19200 PF03725 3' exoribonuclease family, domain 2 PF553_19205 PF00487 Fatty acid desaturase PF553_19210 PF00175 Oxidoreductase NAD-binding domain PF553_19215 PF00440 Bacterial regulatory proteins, tetR family PF553_19220 PF00440 Bacterial regulatory proteins, tetR family PF553_19220 PF08360 QacR-like protein, C-terminal region PF553_19225 PF01323 DSBA-like thioredoxin domain PF553_19235 PF13419 Haloacid dehalogenase-like hydrolase PF553_19240 PF00106 short chain dehydrogenase PF553_19255 PF00696 Amino acid kinase family PF553_19255 PF00583 Acetyltransferase (GNAT) family PF553_19260 PF09084 NMT1/THI5 like PF553_19265 PF09084 NMT1/THI5 like PF553_19270 PF00296 Luciferase-like monooxygenase PF553_19275 PF00528 Binding-protein-dependent transport system inner membrane component PF553_19280 PF00005 ABC transporter PF553_19285 PF08362 YcdC-like protein, C-terminal region PF553_19285 PF00440 Bacterial regulatory proteins, tetR family PF553_19290 PF01048 Phosphorylase superfamily PF553_19300 PF01687 Riboflavin kinase PF553_19300 PF06574 FAD synthetase PF553_19305 PF00133 tRNA synthetases class I (I, L, M and V) PF553_19305 PF08264 Anticodon-binding domain of tRNA PF553_19305 PF06827 Zinc finger found in FPG and IleRS PF553_19310 PF01252 Signal peptidase (SPase) II PF553_19315 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase PF553_19355 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD PF553_19360 PF07859 alpha/beta hydrolase fold PF553_19380 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family PF553_19380 PF03466 LysR substrate binding domain PF553_19385 PF01025 GrpE PF553_19390 PF00012 Hsp70 protein PF553_19410 PF13406 Transglycosylase SLT domain PF553_19415 PF02222 ATP-grasp domain PF553_19415 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain PF553_19420 PF00731 AIR carboxylase PF553_19430 PF01225 Mur ligase family, catalytic domain PF553_19430 PF02875 Mur ligase family, glutamate ligase domain PF553_19430 PF08245 Mur ligase middle domain PF553_19440 PF01569 PAP2 superfamily PF553_19445 PF03741 Integral membrane protein TerC family PF553_19455 PF03738 Glutathionylspermidine synthase preATP-grasp PF553_19465 PF01979 Amidohydrolase family PF553_19470 PF00156 Phosphoribosyl transferase domain PF553_19480 PF10411 Disulfide bond isomerase protein N-terminus PF553_19480 PF13098 Thioredoxin-like domain PF553_19485 PF01545 Cation efflux family PF553_19485 PF16916 Dimerisation domain of Zinc Transporter PF553_19490 PF02583 Metal-sensitive transcriptional repressor PF553_19495 PF01926 50S ribosome-binding GTPase PF553_19495 PF12631 MnmE helical domain PF553_19495 PF10396 GTP-binding protein TrmE N-terminus PF553_19500 PF02096 60Kd inner membrane protein PF553_19500 PF14849 YidC periplasmic domain PF553_19505 PF01809 Putative membrane protein insertion efficiency factor PF553_19510 PF00825 Ribonuclease P PF553_19515 PF00468 Ribosomal protein L34 PF553_19530 PF00877 NlpC/P60 family PF553_19640 PF00005 ABC transporter PF553_19640 PF09383 NIL domain PF553_19645 PF02195 ParB-like nuclease domain PF553_19775 PF00929 Exonuclease PF553_19865 PF00692 dUTPase PF553_19890 PF00268 Ribonucleotide reductase, small chain PF553_19895 PF03477 ATP cone domain PF553_19895 PF02867 Ribonucleotide reductase, barrel domain PF553_19895 PF00317 Ribonucleotide reductase, all-alpha domain PF553_19920 PF13476 AAA domain PF553_19965 PF00154 recA bacterial DNA recombination protein PF553_19985 PF07733 Bacterial DNA polymerase III alpha NTPase domain PF553_19985 PF17657 Bacterial DNA polymerase III alpha subunit finger domain PF553_19985 PF14579 Helix-hairpin-helix motif PF553_19985 PF02811 PHP domain PF553_20020 PF02899 Phage integrase, N-terminal SAM-like domain PF553_20020 PF00589 Phage integrase family PF553_20045 PF00625 Guanylate kinase PF553_20085 PF08275 DNA primase catalytic core, N-terminal domain PF553_20085 PF10410 DnaB-helicase binding domain of primase PF553_20085 PF01807 CHC2 zinc finger