locus-tag class description PF547_00005 PF00308 Bacterial dnaA protein PF547_00005 PF08299 Bacterial dnaA protein helix-turn-helix PF547_00005 PF11638 DnaA N-terminal domain PF547_00010 PF00712 DNA polymerase III beta subunit, N-terminal domain PF547_00010 PF02767 DNA polymerase III beta subunit, central domain PF547_00010 PF02768 DNA polymerase III beta subunit, C-terminal domain PF547_00015 PF02463 RecF/RecN/SMC N terminal domain PF547_00020 PF00204 DNA gyrase B PF547_00020 PF00986 DNA gyrase B subunit, carboxyl terminus PF547_00020 PF18053 DNA gyrase B subunit insert domain PF547_00020 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PF547_00020 PF01751 Toprim domain PF547_00030 PF09335 SNARE associated Golgi protein PF547_00035 PF00005 ABC transporter PF547_00035 PF12848 ABC transporter PF547_00055 PF01521 Iron-sulphur cluster biosynthesis PF547_00060 PF00561 alpha/beta hydrolase fold PF547_00065 PF03702 Anhydro-N-acetylmuramic acid kinase PF547_00070 PF00579 tRNA synthetases class I (W and Y) PF547_00110 PF00209 Sodium:neurotransmitter symporter family PF547_00120 PF01189 16S rRNA methyltransferase RsmB/F PF547_00120 PF01029 NusB family PF547_00125 PF02911 Formyl transferase, C-terminal domain PF547_00125 PF00551 Formyl transferase PF547_00130 PF00920 Dehydratase family PF547_00145 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family PF547_00145 PF03466 LysR substrate binding domain PF547_00150 PF00860 Permease family PF547_00155 PF00311 Phosphoenolpyruvate carboxylase PF547_00160 PF08361 MAATS-type transcriptional repressor, C-terminal region PF547_00160 PF00440 Bacterial regulatory proteins, tetR family PF547_00165 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion PF547_00170 PF00873 AcrB/AcrD/AcrF family PF547_00180 PF00684 DnaJ central domain PF547_00180 PF01556 DnaJ C terminal domain PF547_00180 PF00226 DnaJ domain PF547_00190 PF05173 Dihydrodipicolinate reductase, C-terminus PF547_00190 PF01113 Dihydrodipicolinate reductase, N-terminus PF547_00200 PF07690 Major Facilitator Superfamily PF547_00205 PF00248 Aldo/keto reductase family PF547_00210 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family PF547_00210 PF03466 LysR substrate binding domain PF547_00225 PF00155 Aminotransferase class I and II PF547_00225 PF00392 Bacterial regulatory proteins, gntR family PF547_00230 PF08240 Alcohol dehydrogenase GroES-like domain PF547_00230 PF00107 Zinc-binding dehydrogenase PF547_00235 PF03352 Methyladenine glycosylase PF547_00250 PF00730 HhH-GPD superfamily base excision DNA repair protein PF547_00250 PF00633 Helix-hairpin-helix motif PF547_00250 PF10576 Iron-sulfur binding domain of endonuclease III PF547_00250 PF14815 NUDIX domain PF547_00265 PF07043 Protein of unknown function (DUF1328) PF547_00270 PF03692 Putative zinc- or iron-chelating domain PF547_00275 PF07995 Glucose / Sorbosone dehydrogenase PF547_00280 PF12002 MgsA AAA+ ATPase C terminal PF547_00280 PF16193 AAA C-terminal domain PF547_00280 PF00004 ATPase family associated with various cellular activities (AAA) PF547_00285 PF01226 Formate/nitrite transporter PF547_00295 PF01259 SAICAR synthetase PF547_00305 PF00701 Dihydrodipicolinate synthetase family PF547_00310 PF00857 Isochorismatase family PF547_00315 PF01758 Sodium Bile acid symporter family PF547_00320 PF01554 MatE PF547_00325 PF04463 Protein of unknown function (DUF523) PF547_00330 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily PF547_00340 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily PF547_00345 PF02798 Glutathione S-transferase, N-terminal domain PF547_00345 PF14497 Glutathione S-transferase, C-terminal domain PF547_00355 PF00324 Amino acid permease PF547_00365 PF02492 CobW/HypB/UreG, nucleotide-binding domain PF547_00365 PF07683 Cobalamin synthesis protein cobW C-terminal domain PF547_00375 PF00392 Bacterial regulatory proteins, gntR family PF547_00375 PF07702 UTRA domain PF547_00385 PF17392 Urocanase C-terminal domain PF547_00385 PF17391 Urocanase N-terminal domain PF547_00385 PF01175 Urocanase Rossmann-like domain PF547_00390 PF00221 Aromatic amino acid lyase PF547_00395 PF00324 Amino acid permease PF547_00400 PF01979 Amidohydrolase family PF547_00405 PF00491 Arginase family PF547_00420 PF01177 Asp/Glu/Hydantoin racemase PF547_00425 PF01380 SIS domain PF547_00430 PF12804 MobA-like NTP transferase domain PF547_00430 PF14602 Hexapeptide repeat of succinyl-transferase PF547_00430 PF00132 Bacterial transferase hexapeptide (six repeats) PF547_00435 PF04608 Phosphatidylglycerophosphatase A PF547_00440 PF02769 AIR synthase related protein, C-terminal domain PF547_00440 PF00586 AIR synthase related protein, N-terminal domain PF547_00445 PF01029 NusB family PF547_00450 PF00885 6,7-dimethyl-8-ribityllumazine synthase PF547_00455 PF00925 GTP cyclohydrolase II PF547_00455 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase PF547_00480 PF02580 D-Tyr-tRNA(Tyr) deacylase PF547_00485 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family PF547_00485 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain PF547_00490 PF00581 Rhodanese-like domain PF547_00495 PF02666 Phosphatidylserine decarboxylase PF547_00500 PF03069 Acetamidase/Formamidase family PF547_00520 PF11808 Phosphate regulon sensor protein PhoR PF547_00520 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PF547_00520 PF00512 His Kinase A (phospho-acceptor) domain PF547_00520 PF00989 PAS fold PF547_00525 PF00072 Response regulator receiver domain PF547_00525 PF00486 Transcriptional regulatory protein, C terminal PF547_00535 PF00106 short chain dehydrogenase PF547_00540 PF01554 MatE PF547_00545 PF00155 Aminotransferase class I and II PF547_00550 PF04286 Protein of unknown function (DUF445) PF547_00565 PF04262 Glutamate-cysteine ligase PF547_00570 PF02600 Disulfide bond formation protein DsbB PF547_00575 PF13296 Putative type VI secretion system Rhs element Vgr PF547_00575 PF04717 Type VI secretion system, phage-baseplate injector PF547_00575 PF10106 Uncharacterized protein conserved in bacteria (DUF2345) PF547_00580 PF01476 LysM domain PF547_00580 PF00877 NlpC/P60 family PF547_00595 PF05728 Uncharacterised protein family (UPF0227) PF547_00600 PF00986 DNA gyrase B subunit, carboxyl terminus PF547_00600 PF00204 DNA gyrase B PF547_00600 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PF547_00600 PF01751 Toprim domain PF547_00605 PF00106 short chain dehydrogenase PF547_00610 PF04115 Ureidoglycolate lyase PF547_00615 PF03561 Allantoicase repeat PF547_00620 PF01494 FAD binding domain PF547_00630 PF00860 Permease family PF547_00635 PF00576 HIUase/Transthyretin family PF547_00665 PF02683 Cytochrome C biogenesis protein transmembrane region PF547_00665 PF11412 Disulphide bond corrector protein DsbC PF547_00670 PF07694 5TMR of 5TMR-LYT PF547_00670 PF00990 Diguanylate cyclase, GGDEF domain PF547_00675 PF07859 alpha/beta hydrolase fold PF547_00685 PF03960 ArsC family PF547_00690 PF03372 Endonuclease/Exonuclease/phosphatase family PF547_00695 PF00156 Phosphoribosyl transferase domain PF547_00700 PF00593 TonB dependent receptor PF547_00700 PF07715 TonB-dependent Receptor Plug Domain PF547_00710 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain PF547_00710 PF02951 Prokaryotic glutathione synthetase, N-terminal domain PF547_00715 PF04101 Glycosyltransferase family 28 C-terminal domain PF547_00715 PF03033 Glycosyltransferase family 28 N-terminal domain PF547_00720 PF01225 Mur ligase family, catalytic domain PF547_00720 PF08245 Mur ligase middle domain PF547_00720 PF02875 Mur ligase family, glutamate ligase domain PF547_00725 PF01820 D-ala D-ala ligase N-terminus PF547_00725 PF07478 D-ala D-ala ligase C-terminus PF547_00730 PF03799 Cell division protein FtsQ PF547_00730 PF08478 POTRA domain, FtsQ-type PF547_00735 PF02491 SHS2 domain inserted in FTSA PF547_00740 PF12327 FtsZ family, C-terminal domain PF547_00740 PF00091 Tubulin/FtsZ family, GTPase domain PF547_00745 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase PF547_00755 PF01551 Peptidase family M23 PF547_00760 PF00456 Transketolase, thiamine diphosphate binding domain PF547_00760 PF17831 Pyruvate dehydrogenase E1 component middle domain PF547_00765 PF00364 Biotin-requiring enzyme PF547_00765 PF02817 e3 binding domain PF547_00765 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) PF547_00775 PF01169 Uncharacterized protein family UPF0016 PF547_00780 PF07715 TonB-dependent Receptor Plug Domain PF547_00780 PF00593 TonB dependent receptor PF547_00785 PF01613 Flavin reductase like domain PF547_00785 PF00258 Flavodoxin PF547_00790 PF03692 Putative zinc- or iron-chelating domain PF547_00795 PF00571 CBS domain PF547_00795 PF00478 IMP dehydrogenase / GMP reductase domain PF547_00800 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I PF547_00800 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II PF547_00800 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III PF547_00800 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain PF547_00805 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region PF547_00805 PF01243 Pyridoxamine 5'-phosphate oxidase PF547_00810 PF01368 DHH family PF547_00810 PF17768 RecJ OB domain PF547_00810 PF02272 DHHA1 domain PF547_00830 PF00724 NADH:flavin oxidoreductase / NADH oxidase family PF547_00835 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) PF547_00840 PF04452 RNA methyltransferase PF547_00845 PF00924 Mechanosensitive ion channel PF547_00855 PF16177 Acetyl-coenzyme A synthetase N-terminus PF547_00855 PF00501 AMP-binding enzyme PF547_00855 PF13193 AMP-binding enzyme C-terminal domain PF547_00860 PF00857 Isochorismatase family PF547_00865 PF01037 Lrp/AsnC ligand binding domain PF547_00870 PF00872 Transposase, Mutator family PF547_00875 PF00296 Luciferase-like monooxygenase PF547_00880 PF03358 NADPH-dependent FMN reductase PF547_00885 PF00196 Bacterial regulatory proteins, luxR family PF547_00885 PF00072 Response regulator receiver domain PF547_00895 PF00672 HAMP domain PF547_00895 PF00512 His Kinase A (phospho-acceptor) domain PF547_00895 PF01627 Hpt domain PF547_00895 PF00072 Response regulator receiver domain PF547_00895 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PF547_00900 PF04341 Protein of unknown function, DUF485 PF547_00905 PF00474 Sodium:solute symporter family PF547_00915 PF02028 BCCT, betaine/carnitine/choline family transporter PF547_00925 PF00990 Diguanylate cyclase, GGDEF domain PF547_00935 PF17760 UvrA interaction domain PF547_00935 PF17755 UvrA DNA-binding domain PF547_00935 PF00005 ABC transporter PF547_00940 PF00440 Bacterial regulatory proteins, tetR family PF547_00940 PF16925 Tetracyclin repressor-like, C-terminal domain PF547_00945 PF00107 Zinc-binding dehydrogenase PF547_00945 PF08240 Alcohol dehydrogenase GroES-like domain PF547_00955 PF06942 GlpM protein PF547_00960 PF08543 Phosphomethylpyrimidine kinase PF547_00960 PF02581 Thiamine monophosphate synthase PF547_00960 PF03070 TENA/THI-4/PQQC family PF547_00970 PF07690 Major Facilitator Superfamily PF547_00975 PF00436 Single-strand binding protein family PF547_00985 PF03591 AzlC protein PF547_00995 PF00324 Amino acid permease PF547_01000 PF00392 Bacterial regulatory proteins, gntR family PF547_01000 PF00155 Aminotransferase class I and II PF547_01005 PF00202 Aminotransferase class-III PF547_01010 PF00171 Aldehyde dehydrogenase family PF547_01015 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family PF547_01020 PF00857 Isochorismatase family PF547_01025 PF02678 Pirin PF547_01025 PF05726 Pirin C-terminal cupin domain PF547_01030 PF01593 Flavin containing amine oxidoreductase PF547_01050 PF07690 Major Facilitator Superfamily PF547_01055 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family PF547_01055 PF03466 LysR substrate binding domain PF547_01090 PF02311 AraC-like ligand binding domain PF547_01090 PF12833 Helix-turn-helix domain PF547_01120 PF01638 HxlR-like helix-turn-helix PF547_01125 PF02525 Flavodoxin-like fold PF547_01145 PF02705 K+ potassium transporter PF547_01170 PF00230 Major intrinsic protein PF547_01185 PF00977 Histidine biosynthesis protein PF547_01190 PF01636 Phosphotransferase enzyme family PF547_01205 PF03992 Antibiotic biosynthesis monooxygenase PF547_01220 PF00977 Histidine biosynthesis protein PF547_01235 PF00117 Glutamine amidotransferase class-I PF547_01240 PF00475 Imidazoleglycerol-phosphate dehydratase PF547_01260 PF00583 Acetyltransferase (GNAT) family PF547_01265 PF13336 Acetyl-CoA hydrolase/transferase C-terminal domain PF547_01265 PF02550 Acetyl-CoA hydrolase/transferase N-terminal domain PF547_01275 PF00672 HAMP domain PF547_01275 PF00512 His Kinase A (phospho-acceptor) domain PF547_01275 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PF547_01280 PF00072 Response regulator receiver domain PF547_01280 PF00486 Transcriptional regulatory protein, C terminal PF547_01285 PF17674 HHH domain PF547_01285 PF00575 S1 RNA binding domain PF547_01285 PF09371 Tex-like protein N-terminal domain PF547_01285 PF16921 Tex protein YqgF-like domain PF547_01290 PF00916 Sulfate permease family PF547_01290 PF01740 STAS domain PF547_01295 PF00106 short chain dehydrogenase PF547_01300 PF01053 Cys/Met metabolism PLP-dependent enzyme PF547_01305 PF00005 ABC transporter PF547_01305 PF12848 ABC transporter PF547_01330 PF04191 Phospholipid methyltransferase PF547_01350 PF00529 HlyD membrane-fusion protein of T1SS PF547_01350 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion PF547_01355 PF00873 AcrB/AcrD/AcrF family PF547_01360 PF01545 Cation efflux family PF547_01390 PF00324 Amino acid permease PF547_01405 PF00749 tRNA synthetases class I (E and Q), catalytic domain PF547_01420 PF01795 MraW methylase family PF547_01430 PF03717 Penicillin-binding Protein dimerisation domain PF547_01430 PF00905 Penicillin binding protein transpeptidase domain PF547_01435 PF01225 Mur ligase family, catalytic domain PF547_01435 PF02875 Mur ligase family, glutamate ligase domain PF547_01435 PF08245 Mur ligase middle domain PF547_01440 PF01225 Mur ligase family, catalytic domain PF547_01440 PF02875 Mur ligase family, glutamate ligase domain PF547_01440 PF08245 Mur ligase middle domain PF547_01445 PF00953 Glycosyl transferase family 4 PF547_01455 PF13847 Methyltransferase domain PF547_01460 PF00905 Penicillin binding protein transpeptidase domain PF547_01460 PF00912 Transglycosylase PF547_01460 PF17092 Penicillin-binding protein OB-like domain PF547_01470 PF05137 Fimbrial assembly protein (PilN) PF547_01475 PF04350 Pilus assembly protein, PilO PF547_01485 PF07660 Secretin and TonB N terminus short domain PF547_01485 PF03958 Bacterial type II/III secretion system short domain PF547_01485 PF00263 Bacterial type II and III secretion system protein PF547_01485 PF11741 AMIN domain PF547_01490 PF01202 Shikimate kinase PF547_01495 PF01761 3-dehydroquinate synthase PF547_01505 PF01493 GXGXG motif PF547_01505 PF01645 Conserved region in glutamate synthase PF547_01505 PF04898 Glutamate synthase central domain PF547_01505 PF00310 Glutamine amidotransferases class-II PF547_01510 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster PF547_01510 PF07992 Pyridine nucleotide-disulphide oxidoreductase PF547_01520 PF04011 LemA family PF547_01525 PF04536 TPM domain PF547_01545 PF11846 Virulence factor membrane-bound polymerase, C-terminal PF547_01545 PF04932 O-Antigen ligase PF547_01545 PF15864 Protein glycosylation ligase PF547_01550 PF00210 Ferritin-like domain PF547_01555 PF04324 BFD-like [2Fe-2S] binding domain PF547_01560 PF01042 Endoribonuclease L-PSP PF547_01565 PF04607 Region found in RelA / SpoT proteins PF547_01565 PF13291 ACT domain PF547_01565 PF02824 TGS domain PF547_01575 PF01192 RNA polymerase Rpb6 PF547_01580 PF00625 Guanylate kinase PF547_01585 PF02401 LytB protein PF547_01625 PF00886 Ribosomal protein S16 PF547_01630 PF05239 PRC-barrel domain PF547_01630 PF01782 RimM N-terminal domain PF547_01635 PF01746 tRNA (Guanine-1)-methyltransferase PF547_01640 PF01245 Ribosomal protein L19 PF547_01645 PF00561 alpha/beta hydrolase fold PF547_01650 PF03280 Proteobacterial lipase chaperone protein PF547_01655 PF09157 Pseudouridine synthase II TruB, C-terminal PF547_01655 PF16198 tRNA pseudouridylate synthase B C-terminal domain PF547_01655 PF01509 TruB family pseudouridylate synthase (N terminal domain) PF547_01660 PF01925 Sulfite exporter TauE/SafE PF547_01670 PF00892 EamA-like transporter family PF547_01675 PF00892 EamA-like transporter family PF547_01680 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain PF547_01680 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain PF547_01685 PF02913 FAD linked oxidases, C-terminal domain PF547_01685 PF01565 FAD binding domain PF547_01695 PF03992 Antibiotic biosynthesis monooxygenase PF547_01700 PF02525 Flavodoxin-like fold PF547_01710 PF07690 Major Facilitator Superfamily PF547_01715 PF12805 FUSC-like inner membrane protein yccS PF547_01720 PF00080 Copper/zinc superoxide dismutase (SODC) PF547_01725 PF01594 AI-2E family transporter PF547_01730 PF13614 AAA domain PF547_01760 PF00324 Amino acid permease PF547_01765 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain PF547_01765 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase PF547_01770 PF00202 Aminotransferase class-III PF547_01775 PF04958 Arginine N-succinyltransferase beta subunit PF547_01780 PF00171 Aldehyde dehydrogenase family PF547_01785 PF04996 Succinylarginine dihydrolase PF547_01790 PF04952 Succinylglutamate desuccinylase / Aspartoacylase family PF547_01805 PF00082 Subtilase family PF547_01805 PF05922 Peptidase inhibitor I9 PF547_01820 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family PF547_01820 PF03466 LysR substrate binding domain PF547_01825 PF00892 EamA-like transporter family PF547_01835 PF02092 Glycyl-tRNA synthetase beta subunit PF547_01835 PF05746 DALR anticodon binding domain PF547_01840 PF02091 Glycyl-tRNA synthetase alpha subunit PF547_01865 PF00571 CBS domain PF547_01870 PF04024 PspC domain PF547_01880 PF00441 Acyl-CoA dehydrogenase, C-terminal domain PF547_01880 PF12806 Acetyl-CoA dehydrogenase C-terminal like PF547_01880 PF02770 Acyl-CoA dehydrogenase, middle domain PF547_01880 PF02771 Acyl-CoA dehydrogenase, N-terminal domain PF547_01890 PF01488 Shikimate / quinate 5-dehydrogenase PF547_01890 PF08501 Shikimate dehydrogenase substrate binding domain PF547_01890 PF18317 Shikimate 5'-dehydrogenase C-terminal domain PF547_01895 PF01218 Coproporphyrinogen III oxidase PF547_01900 PF00925 GTP cyclohydrolase II PF547_01905 PF02780 Transketolase, C-terminal domain PF547_01905 PF13292 1-deoxy-D-xylulose-5-phosphate synthase PF547_01905 PF02779 Transketolase, pyrimidine binding domain PF547_01910 PF00459 Inositol monophosphatase family PF547_01915 PF03880 DbpA RNA binding domain PF547_01915 PF00270 DEAD/DEAH box helicase PF547_01915 PF12343 Cold shock protein DEAD box A PF547_01915 PF00271 Helicase conserved C-terminal domain PF547_01925 PF00005 ABC transporter PF547_01930 PF02405 Permease MlaE PF547_01940 PF05494 MlaC protein PF547_01950 PF01544 CorA-like Mg2+ transporter protein PF547_01955 PF03641 Possible lysine decarboxylase PF547_01960 PF00293 NUDIX domain PF547_01965 PF00156 Phosphoribosyl transferase domain PF547_01970 PF17191 RecG wedge domain PF547_01970 PF00271 Helicase conserved C-terminal domain PF547_01970 PF00270 DEAD/DEAH box helicase PF547_01985 PF01553 Acyltransferase PF547_01995 PF00375 Sodium:dicarboxylate symporter family PF547_02005 PF01926 50S ribosome-binding GTPase PF547_02010 PF02082 Transcriptional regulator PF547_02015 PF00970 Oxidoreductase FAD-binding domain PF547_02015 PF00175 Oxidoreductase NAD-binding domain PF547_02015 PF00042 Globin PF547_02020 PF05872 Bacterial protein of unknown function (DUF853) PF547_02025 PF01053 Cys/Met metabolism PLP-dependent enzyme PF547_02030 PF00117 Glutamine amidotransferase class-I PF547_02035 PF00338 Ribosomal protein S10p/S20e PF547_02040 PF00297 Ribosomal protein L3 PF547_02045 PF00573 Ribosomal protein L4/L1 family PF547_02050 PF00276 Ribosomal protein L23 PF547_02055 PF00181 Ribosomal Proteins L2, RNA binding domain PF547_02055 PF03947 Ribosomal Proteins L2, C-terminal domain PF547_02060 PF00203 Ribosomal protein S19 PF547_02065 PF00237 Ribosomal protein L22p/L17e PF547_02075 PF00252 Ribosomal protein L16p/L10e PF547_02080 PF00831 Ribosomal L29 protein PF547_02085 PF00366 Ribosomal protein S17 PF547_02090 PF00238 Ribosomal protein L14p/L23e PF547_02095 PF00467 KOW motif PF547_02095 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 PF547_02100 PF00281 Ribosomal protein L5 PF547_02100 PF00673 ribosomal L5P family C-terminus PF547_02105 PF00253 Ribosomal protein S14p/S29e PF547_02110 PF00410 Ribosomal protein S8 PF547_02115 PF00347 Ribosomal protein L6 PF547_02120 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast PF547_02125 PF03719 Ribosomal protein S5, C-terminal domain PF547_02125 PF00333 Ribosomal protein S5, N-terminal domain PF547_02130 PF00327 Ribosomal protein L30p/L7e PF547_02135 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A PF547_02140 PF00344 SecY translocase PF547_02145 PF00444 Ribosomal protein L36 PF547_02150 PF00416 Ribosomal protein S13/S18 PF547_02155 PF00411 Ribosomal protein S11 PF547_02160 PF00163 Ribosomal protein S4/S9 N-terminal domain PF547_02160 PF01479 S4 domain PF547_02165 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain PF547_02165 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain PF547_02165 PF01000 RNA polymerase Rpb3/RpoA insert domain PF547_02170 PF01196 Ribosomal protein L17 PF547_02175 PF00743 Flavin-binding monooxygenase-like PF547_02180 PF00441 Acyl-CoA dehydrogenase, C-terminal domain PF547_02180 PF02770 Acyl-CoA dehydrogenase, middle domain PF547_02180 PF02771 Acyl-CoA dehydrogenase, N-terminal domain PF547_02185 PF03937 Flavinator of succinate dehydrogenase PF547_02215 PF09526 Probable metal-binding protein (DUF2387) PF547_02220 PF01432 Peptidase family M3 PF547_02225 PF08461 Ribonuclease R winged-helix domain PF547_02225 PF17876 Cold shock domain PF547_02225 PF00773 RNB domain PF547_02225 PF00575 S1 RNA binding domain PF547_02225 PF08206 Ribonuclease B OB domain PF547_02270 PF01557 Fumarylacetoacetate (FAA) hydrolase family PF547_02275 PF12833 Helix-turn-helix domain PF547_02280 PF00892 EamA-like transporter family PF547_02285 PF03631 Virulence factor BrkB PF547_02290 PF03358 NADPH-dependent FMN reductase PF547_02315 PF02130 Uncharacterized protein family UPF0054 PF547_02320 PF02562 PhoH-like protein PF547_02325 PF04055 Radical SAM superfamily PF547_02325 PF01938 TRAM domain PF547_02325 PF00919 Uncharacterized protein family UPF0004 PF547_02330 PF01551 Peptidase family M23 PF547_02330 PF10145 Phage-related minor tail protein PF547_02330 PF01464 Transglycosylase SLT domain PF547_02340 PF00056 lactate/malate dehydrogenase, NAD binding domain PF547_02340 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain PF547_02360 PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ PF547_02365 PF01066 CDP-alcohol phosphatidyltransferase PF547_02410 PF02770 Acyl-CoA dehydrogenase, middle domain PF547_02410 PF02771 Acyl-CoA dehydrogenase, N-terminal domain PF547_02410 PF00441 Acyl-CoA dehydrogenase, C-terminal domain PF547_02415 PF17932 Tetracyclin repressor-like, C-terminal domain PF547_02415 PF00440 Bacterial regulatory proteins, tetR family PF547_02430 PF01039 Carboxyl transferase domain PF547_02435 PF02771 Acyl-CoA dehydrogenase, N-terminal domain PF547_02435 PF02770 Acyl-CoA dehydrogenase, middle domain PF547_02435 PF00441 Acyl-CoA dehydrogenase, C-terminal domain PF547_02445 PF02785 Biotin carboxylase C-terminal domain PF547_02445 PF00289 Biotin carboxylase, N-terminal domain PF547_02445 PF00364 Biotin-requiring enzyme PF547_02445 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain PF547_02455 PF04386 Stringent starvation protein B PF547_02460 PF00043 Glutathione S-transferase, C-terminal domain PF547_02460 PF13417 Glutathione S-transferase, N-terminal domain PF547_02465 PF00380 Ribosomal protein S9/S16 PF547_02470 PF00572 Ribosomal protein L13 PF547_02475 PF04166 Pyridoxal phosphate biosynthetic protein PdxA PF547_02480 PF00398 Ribosomal RNA adenine dimethylase PF547_02485 PF00149 Calcineurin-like phosphoesterase PF547_02505 PF01926 50S ribosome-binding GTPase PF547_02505 PF13167 GTP-binding GTPase N-terminal PF547_02505 PF16360 GTP-binding GTPase Middle Region PF547_02515 PF13091 PLD-like domain PF547_02520 PF00149 Calcineurin-like phosphoesterase PF547_02520 PF10518 TAT (twin-arginine translocation) pathway signal sequence PF547_02525 PF00691 OmpA family PF547_02525 PF01389 OmpA-like transmembrane domain PF547_02530 PF17152 Periplasmic sensor domain PF547_02530 PF00990 Diguanylate cyclase, GGDEF domain PF547_02565 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain PF547_02565 PF07992 Pyridine nucleotide-disulphide oxidoreductase PF547_02575 PF04273 Putative phosphatase (DUF442) PF547_02575 PF00753 Metallo-beta-lactamase superfamily PF547_02580 PF00561 alpha/beta hydrolase fold PF547_02585 PF00085 Thioredoxin PF547_02590 PF03061 Thioesterase superfamily PF547_02600 PF04461 Protein of unknown function (DUF520) PF547_02610 PF01266 FAD dependent oxidoreductase PF547_02610 PF05430 S-adenosyl-L-methionine-dependent methyltransferase PF547_02620 PF03795 YCII-related domain PF547_02625 PF04279 Intracellular septation protein A PF547_02630 PF02811 PHP domain PF547_02635 PF01062 Bestrophin, RFP-TM, chloride channel PF547_02640 PF04002 RadC-like JAB domain PF547_02645 PF04127 DNA / pantothenate metabolism flavoprotein PF547_02645 PF02441 Flavoprotein PF547_02650 PF02355 Protein export membrane protein PF547_02650 PF07549 SecD/SecF GG Motif PF547_02655 PF07549 SecD/SecF GG Motif PF547_02655 PF13721 SecD export protein N-terminal TM region PF547_02655 PF02355 Protein export membrane protein PF547_02660 PF02699 Preprotein translocase subunit PF547_02665 PF01702 Queuine tRNA-ribosyltransferase PF547_02680 PF02547 Queuosine biosynthesis protein PF547_02690 PF07689 KaiB domain PF547_02690 PF00512 His Kinase A (phospho-acceptor) domain PF547_02690 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PF547_02695 PF03710 Glutamate-ammonia ligase adenylyltransferase PF547_02695 PF08335 GlnD PII-uridylyltransferase PF547_02700 PF01063 Amino-transferase class IV PF547_02715 PF01522 Polysaccharide deacetylase PF547_02720 PF00535 Glycosyl transferase family 2 PF547_02725 PF13439 Glycosyltransferase Family 4 PF547_02725 PF00534 Glycosyl transferases group 1 PF547_02750 PF11380 Stealth protein CR2, conserved region 2 PF547_02750 PF17102 Stealth protein CR3, conserved region 3 PF547_02750 PF17101 Stealth protein CR1, conserved region 1 PF547_02755 PF01336 OB-fold nucleic acid binding domain PF547_02755 PF00152 tRNA synthetases class II (D, K and N) PF547_02755 PF02938 GAD domain PF547_02765 PF07715 TonB-dependent Receptor Plug Domain PF547_02765 PF00593 TonB dependent receptor PF547_02785 PF06146 Phosphate-starvation-inducible E PF547_02790 PF00043 Glutathione S-transferase, C-terminal domain PF547_02790 PF02798 Glutathione S-transferase, N-terminal domain PF547_02795 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family PF547_02795 PF03466 LysR substrate binding domain PF547_02800 PF02771 Acyl-CoA dehydrogenase, N-terminal domain PF547_02800 PF02770 Acyl-CoA dehydrogenase, middle domain PF547_02800 PF12806 Acetyl-CoA dehydrogenase C-terminal like PF547_02800 PF00441 Acyl-CoA dehydrogenase, C-terminal domain PF547_02805 PF02770 Acyl-CoA dehydrogenase, middle domain PF547_02805 PF02771 Acyl-CoA dehydrogenase, N-terminal domain PF547_02805 PF00441 Acyl-CoA dehydrogenase, C-terminal domain PF547_02805 PF12806 Acetyl-CoA dehydrogenase C-terminal like PF547_02815 PF00672 HAMP domain PF547_02815 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PF547_02815 PF00512 His Kinase A (phospho-acceptor) domain PF547_02820 PF00072 Response regulator receiver domain PF547_02820 PF00486 Transcriptional regulatory protein, C terminal PF547_02825 PF02696 Uncharacterized ACR, YdiU/UPF0061 family PF547_02845 PF01923 Cobalamin adenosyltransferase PF547_02850 PF07715 TonB-dependent Receptor Plug Domain PF547_02850 PF00593 TonB dependent receptor PF547_02855 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase PF547_02860 PF00291 Pyridoxal-phosphate dependent enzyme PF547_02885 PF00290 Tryptophan synthase alpha chain PF547_02890 PF01039 Carboxyl transferase domain PF547_02895 PF08245 Mur ligase middle domain PF547_02895 PF02875 Mur ligase family, glutamate ligase domain PF547_02910 PF00753 Metallo-beta-lactamase superfamily PF547_02915 PF10417 C-terminal domain of 1-Cys peroxiredoxin PF547_02915 PF00578 AhpC/TSA family PF547_02920 PF02810 SEC-C motif PF547_02920 PF07517 SecA DEAD-like domain PF547_02920 PF01043 SecA preprotein cross-linking domain PF547_02920 PF07516 SecA Wing and Scaffold domain PF547_02930 PF07690 Major Facilitator Superfamily PF547_02930 PF00083 Sugar (and other) transporter PF547_02935 PF03006 Haemolysin-III related PF547_02960 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain PF547_02960 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain PF547_02960 PF00378 Enoyl-CoA hydratase/isomerase PF547_02970 PF12833 Helix-turn-helix domain PF547_02970 PF02311 AraC-like ligand binding domain PF547_02975 PF02515 CoA-transferase family III PF547_02980 PF04966 Carbohydrate-selective porin, OprB family PF547_02985 PF01011 PQQ enzyme repeat PF547_02990 PF01077 Nitrite and sulphite reductase 4Fe-4S domain PF547_02990 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain PF547_03000 PF00893 Small Multidrug Resistance protein PF547_03010 PF02803 Thiolase, C-terminal domain PF547_03010 PF00108 Thiolase, N-terminal domain PF547_03020 PF13505 Outer membrane protein beta-barrel domain PF547_03020 PF00691 OmpA family PF547_03030 PF01139 tRNA-splicing ligase RtcB PF547_03035 PF00324 Amino acid permease PF547_03040 PF08468 Methyltransferase small domain N-terminal PF547_03040 PF05175 Methyltransferase small domain PF547_03045 PF00860 Permease family PF547_03050 PF00679 Elongation factor G C-terminus PF547_03050 PF03144 Elongation factor Tu domain 2 PF547_03050 PF00009 Elongation factor Tu GTP binding domain PF547_03055 PF01741 Large-conductance mechanosensitive channel, MscL PF547_03070 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain PF547_03070 PF06827 Zinc finger found in FPG and IleRS PF547_03070 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain PF547_03075 PF02245 Methylpurine-DNA glycosylase (MPG) PF547_03095 PF00665 Integrase core domain PF547_03120 PF00589 Phage integrase family PF547_03120 PF02899 Phage integrase, N-terminal SAM-like domain PF547_03155 PF00905 Penicillin binding protein transpeptidase domain PF547_03180 PF01740 STAS domain PF547_03180 PF00916 Sulfate permease family PF547_03185 PF00582 Universal stress protein family PF547_03205 PF00665 Integrase core domain PF547_03215 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I PF547_03215 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II PF547_03215 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III PF547_03215 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain PF547_03220 PF00809 Pterin binding enzyme PF547_03235 PF00724 NADH:flavin oxidoreductase / NADH oxidase family PF547_03250 PF10411 Disulfide bond isomerase protein N-terminus PF547_03250 PF13098 Thioredoxin-like domain PF547_03255 PF01571 Aminomethyltransferase folate-binding domain PF547_03265 PF04343 Protein of unknown function, DUF488 PF547_03270 PF03831 PhnA domain PF547_03270 PF08274 PhnA Zinc-Ribbon PF547_03275 PF07411 Domain of unknown function (DUF1508) PF547_03280 PF03129 Anticodon binding domain PF547_03280 PF04073 Aminoacyl-tRNA editing domain PF547_03280 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) PF547_03285 PF00873 AcrB/AcrD/AcrF family PF547_03300 PF00072 Response regulator receiver domain PF547_03305 PF00072 Response regulator receiver domain PF547_03310 PF01584 CheW-like domain PF547_03315 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain PF547_03315 PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term PF547_03320 PF01627 Hpt domain PF547_03320 PF01584 CheW-like domain PF547_03320 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PF547_03320 PF00072 Response regulator receiver domain PF547_03330 PF01546 Peptidase family M20/M25/M40 PF547_03330 PF07687 Peptidase dimerisation domain PF547_03335 PF08085 Entericidin EcnA/B family PF547_03345 PF04304 Protein of unknown function (DUF454) PF547_03350 PF17969 L,D-transpeptidase C-terminal domain PF547_03350 PF03734 L,D-transpeptidase catalytic domain PF547_03390 PF00175 Oxidoreductase NAD-binding domain PF547_03390 PF00667 FAD binding domain PF547_03390 PF00258 Flavodoxin PF547_03400 PF12805 FUSC-like inner membrane protein yccS PF547_03405 PF07690 Major Facilitator Superfamily PF547_03410 PF00881 Nitroreductase family PF547_03425 PF01235 Sodium:alanine symporter family PF547_03430 PF01734 Patatin-like phospholipase PF547_03435 PF13291 ACT domain PF547_03435 PF00291 Pyridoxal-phosphate dependent enzyme PF547_03440 PF05992 SbmA/BacA-like family PF547_03490 PF02934 GatB/GatE catalytic domain PF547_03490 PF02637 GatB domain PF547_03495 PF01425 Amidase PF547_03500 PF02686 Glu-tRNAGln amidotransferase C subunit PF547_03510 PF04085 rod shape-determining protein MreC PF547_03515 PF04093 rod shape-determining protein MreD PF547_03520 PF02545 Maf-like protein PF547_03525 PF10150 Ribonuclease E/G family PF547_03525 PF00575 S1 RNA binding domain PF547_03535 PF03007 Wax ester synthase-like Acyl-CoA acyltransferase domain PF547_03535 PF06974 Protein of unknown function (DUF1298) PF547_03540 PF01507 Phosphoadenosine phosphosulfate reductase family PF547_03555 PF02525 Flavodoxin-like fold PF547_03575 PF02673 Bacitracin resistance protein BacA PF547_03580 PF12833 Helix-turn-helix domain PF547_03580 PF06719 AraC-type transcriptional regulator N-terminus PF547_03585 PF08659 KR domain PF547_03585 PF14765 Polyketide synthase dehydratase PF547_03585 PF00109 Beta-ketoacyl synthase, N-terminal domain PF547_03585 PF16197 Ketoacyl-synthetase C-terminal extension PF547_03585 PF00698 Acyl transferase domain PF547_03585 PF00550 Phosphopantetheine attachment site PF547_03585 PF02801 Beta-ketoacyl synthase, C-terminal domain PF547_03585 PF09277 Erythronolide synthase, docking PF547_03585 PF08990 Erythronolide synthase docking PF547_03585 PF08240 Alcohol dehydrogenase GroES-like domain PF547_03590 PF01965 DJ-1/PfpI family PF547_03600 PF00324 Amino acid permease PF547_03605 PF04303 PrpF protein PF547_03610 PF00348 Polyprenyl synthetase PF547_03615 PF04237 YjbR PF547_03620 PF01145 SPFH domain / Band 7 family PF547_03630 PF01734 Patatin-like phospholipase PF547_03650 PF08019 Phosphoethanolamine transferase EptA/EptB PF547_03650 PF00884 Sulfatase PF547_03655 PF00486 Transcriptional regulatory protein, C terminal PF547_03655 PF00072 Response regulator receiver domain PF547_03660 PF08521 Two-component sensor kinase N-terminal PF547_03660 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PF547_03660 PF00512 His Kinase A (phospho-acceptor) domain PF547_03670 PF00909 Ammonium Transporter Family PF547_03675 PF03466 LysR substrate binding domain PF547_03675 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family PF547_03695 PF10458 Valyl tRNA synthetase tRNA binding arm PF547_03695 PF00133 tRNA synthetases class I (I, L, M and V) PF547_03695 PF08264 Anticodon-binding domain of tRNA PF547_03715 PF01906 Putative heavy-metal-binding PF547_03720 PF01906 Putative heavy-metal-binding PF547_03725 PF02321 Outer membrane efflux protein PF547_03730 PF00873 AcrB/AcrD/AcrF family PF547_03735 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion PF547_03735 PF00529 HlyD membrane-fusion protein of T1SS PF547_03740 PF01569 PAP2 superfamily PF547_03750 PF00348 Polyprenyl synthetase PF547_03760 PF00829 Ribosomal prokaryotic L21 protein PF547_03765 PF01016 Ribosomal L27 protein PF547_03770 PF03548 Outer membrane lipoprotein carrier protein LolA PF547_03780 PF02403 Seryl-tRNA synthetase N-terminal domain PF547_03780 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) PF547_03785 PF14824 Sirohaem biosynthesis protein central PF547_03785 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases PF547_03785 PF10414 Sirohaem synthase dimerisation region PF547_03790 PF00588 SpoU rRNA Methylase family PF547_03795 PF01638 HxlR-like helix-turn-helix PF547_03800 PF03358 NADPH-dependent FMN reductase PF547_03805 PF13520 Amino acid permease PF547_03810 PF00465 Iron-containing alcohol dehydrogenase PF547_03820 PF03099 Biotin/lipoate A/B protein ligase family PF547_03825 PF04359 Protein of unknown function (DUF493) PF547_03830 PF04539 Sigma-70 region 3 PF547_03830 PF04546 Sigma-70, non-essential region PF547_03830 PF03979 Sigma-70 factor, region 1.1 PF547_03830 PF00140 Sigma-70 factor, region 1.2 PF547_03830 PF04542 Sigma-70 region 2 PF547_03830 PF04545 Sigma-70, region 4 PF547_03850 PF17773 UPF0176 acylphosphatase like domain PF547_03850 PF00581 Rhodanese-like domain PF547_03860 PF00285 Citrate synthase, C-terminal domain PF547_03865 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit PF547_03870 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit PF547_03875 PF00890 FAD binding domain PF547_03875 PF02910 Fumarate reductase flavoprotein C-term PF547_03880 PF13085 2Fe-2S iron-sulfur cluster binding domain PF547_03895 PF16870 2-oxoglutarate dehydrogenase C-terminal PF547_03895 PF02779 Transketolase, pyrimidine binding domain PF547_03895 PF16078 2-oxoglutarate dehydrogenase N-terminus PF547_03895 PF00676 Dehydrogenase E1 component PF547_03900 PF00364 Biotin-requiring enzyme PF547_03900 PF02817 e3 binding domain PF547_03900 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) PF547_03905 PF07992 Pyridine nucleotide-disulphide oxidoreductase PF547_03905 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain PF547_03910 PF08442 ATP-grasp domain PF547_03910 PF00549 CoA-ligase PF547_03915 PF02629 CoA binding domain PF547_03915 PF00549 CoA-ligase PF547_03920 PF00579 tRNA synthetases class I (W and Y) PF547_03925 PF05661 Protein of unknown function (DUF808) PF547_03930 PF04228 Putative neutral zinc metallopeptidase PF547_03935 PF00999 Sodium/hydrogen exchanger family PF547_03950 PF09587 Bacterial capsule synthesis protein PGA_cap PF547_03960 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain PF547_03965 PF00582 Universal stress protein family PF547_03975 PF01272 Transcription elongation factor, GreA/GreB, C-term PF547_03975 PF03449 Transcription elongation factor, N-terminal PF547_03980 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain PF547_03980 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain PF547_03980 PF02142 MGS-like domain PF547_03985 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain PF547_03985 PF00117 Glutamine amidotransferase class-I PF547_04000 PF01985 CRS1 / YhbY (CRM) domain PF547_04005 PF01728 FtsJ-like methyltransferase PF547_04010 PF06480 FtsH Extracellular PF547_04010 PF01434 Peptidase family M41 PF547_04010 PF17862 AAA+ lid domain PF547_04010 PF00004 ATPase family associated with various cellular activities (AAA) PF547_04015 PF00809 Pterin binding enzyme PF547_04035 PF16655 PhoD-like phosphatase, N-terminal domain PF547_04035 PF09423 PhoD-like phosphatase PF547_04050 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain PF547_04050 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain PF547_04065 PF00083 Sugar (and other) transporter PF547_04070 PF00370 FGGY family of carbohydrate kinases, N-terminal domain PF547_04070 PF02782 FGGY family of carbohydrate kinases, C-terminal domain PF547_04075 PF16901 C-terminal domain of alpha-glycerophosphate oxidase PF547_04075 PF01266 FAD dependent oxidoreductase PF547_04080 PF00821 Phosphoenolpyruvate carboxykinase C-terminal P-loop domain PF547_04080 PF17297 Phosphoenolpyruvate carboxykinase N-terminal domain PF547_04085 PF00781 Diacylglycerol kinase catalytic domain PF547_04090 PF00149 Calcineurin-like phosphoesterase PF547_04100 PF00166 Chaperonin 10 Kd subunit PF547_04105 PF00118 TCP-1/cpn60 chaperonin family PF547_04110 PF01219 Prokaryotic diacylglycerol kinase PF547_04120 PF03009 Glycerophosphoryl diester phosphodiesterase family PF547_04125 PF00873 AcrB/AcrD/AcrF family PF547_04135 PF01435 Peptidase family M48 PF547_04140 PF01464 Transglycosylase SLT domain PF547_04145 PF01171 PP-loop family PF547_04155 PF00497 Bacterial extracellular solute-binding proteins, family 3 PF547_04155 PF01464 Transglycosylase SLT domain PF547_04160 PF03449 Transcription elongation factor, N-terminal PF547_04160 PF01272 Transcription elongation factor, GreA/GreB, C-term PF547_04175 PF00668 Condensation domain PF547_04175 PF00550 Phosphopantetheine attachment site PF547_04175 PF00975 Thioesterase domain PF547_04175 PF00501 AMP-binding enzyme PF547_04175 PF13193 AMP-binding enzyme C-terminal domain PF547_04205 PF00881 Nitroreductase family PF547_04220 PF02595 Glycerate kinase family PF547_04225 PF00384 Molybdopterin oxidoreductase PF547_04230 PF02634 FdhD/NarQ family PF547_04235 PF06803 Protein of unknown function (DUF1232) PF547_04240 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain PF547_04240 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain PF547_04240 PF11890 Domain of unknown function (DUF3410) PF547_04245 PF00152 tRNA synthetases class II (D, K and N) PF547_04255 PF18073 Rubredoxin metal binding domain PF547_04260 PF00324 Amino acid permease PF547_04270 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain PF547_04270 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain PF547_04275 PF01678 Diaminopimelate epimerase PF547_04280 PF01810 LysE type translocator PF547_04285 PF02899 Phage integrase, N-terminal SAM-like domain PF547_04285 PF00589 Phage integrase family PF547_04290 PF01012 Electron transfer flavoprotein domain PF547_04295 PF01012 Electron transfer flavoprotein domain PF547_04295 PF00766 Electron transfer flavoprotein FAD-binding domain PF547_04300 PF03989 DNA gyrase C-terminal domain, beta-propeller PF547_04300 PF00521 DNA gyrase/topoisomerase IV, subunit A PF547_04315 PF00535 Glycosyl transferase family 2 PF547_04335 PF13533 Biotin-lipoyl like PF547_04345 PF00266 Aminotransferase class-V PF547_04360 PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 PF547_04370 PF02687 FtsX-like permease family PF547_04370 PF12704 MacB-like periplasmic core domain PF547_04375 PF00005 ABC transporter PF547_04380 PF00753 Metallo-beta-lactamase superfamily PF547_04380 PF03772 Competence protein PF547_04380 PF13567 Domain of unknown function (DUF4131) PF547_04390 PF06965 Na+/H+ antiporter 1 PF547_04390 PF01343 Peptidase family S49 PF547_04395 PF12697 Alpha/beta hydrolase family PF547_04400 PF00551 Formyl transferase PF547_04405 PF00586 AIR synthase related protein, N-terminal domain PF547_04405 PF02769 AIR synthase related protein, C-terminal domain PF547_04410 PF01594 AI-2E family transporter PF547_04415 PF11638 DnaA N-terminal domain PF547_04415 PF00308 Bacterial dnaA protein PF547_04415 PF08299 Bacterial dnaA protein helix-turn-helix PF547_04445 PF00588 SpoU rRNA Methylase family PF547_04445 PF08032 RNA 2'-O ribose methyltransferase substrate binding PF547_04450 PF00316 Fructose-1-6-bisphosphatase, N-terminal domain PF547_04460 PF00691 OmpA family PF547_04465 PF07676 WD40-like Beta Propeller Repeat PF547_04465 PF04052 TolB amino-terminal domain PF547_04475 PF02472 Biopolymer transport protein ExbD/TolR PF547_04480 PF01618 MotA/TolQ/ExbB proton channel family PF547_04485 PF03061 Thioesterase superfamily PF547_04490 PF01546 Peptidase family M20/M25/M40 PF547_04490 PF07687 Peptidase dimerisation domain PF547_04495 PF05491 RuvB C-terminal winged helix domain PF547_04495 PF17864 RuvB AAA lid domain PF547_04495 PF05496 Holliday junction DNA helicase RuvB P-loop domain PF547_04500 PF07499 RuvA, C-terminal domain PF547_04500 PF01330 RuvA N terminal domain PF547_04505 PF01966 HD domain PF547_04510 PF02769 AIR synthase related protein, C-terminal domain PF547_04510 PF18076 Formylglycinamide ribonucleotide amidotransferase N-terminal PF547_04510 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain PF547_04515 PF07690 Major Facilitator Superfamily PF547_04525 PF01784 NIF3 (NGG1p interacting factor 3) PF547_04530 PF00378 Enoyl-CoA hydratase/isomerase PF547_04535 PF00293 NUDIX domain PF547_04535 PF01467 Cytidylyltransferase-like PF547_04545 PF00578 AhpC/TSA family PF547_04560 PF06508 Queuosine biosynthesis protein QueC PF547_04570 PF00132 Bacterial transferase hexapeptide (six repeats) PF547_04570 PF14805 Tetrahydrodipicolinate N-succinyltransferase N-terminal PF547_04570 PF14602 Hexapeptide repeat of succinyl-transferase PF547_04580 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family PF547_04580 PF03466 LysR substrate binding domain PF547_04585 PF00005 ABC transporter PF547_04585 PF12857 TOBE-like domain PF547_04590 PF00528 Binding-protein-dependent transport system inner membrane component PF547_04595 PF00528 Binding-protein-dependent transport system inner membrane component PF547_04610 PF01063 Amino-transferase class IV PF547_04615 PF02618 YceG-like family PF547_04620 PF02223 Thymidylate kinase PF547_04630 PF02910 Fumarate reductase flavoprotein C-term PF547_04630 PF00890 FAD binding domain PF547_04635 PF13180 PDZ domain PF547_04645 PF00009 Elongation factor Tu GTP binding domain PF547_04645 PF03144 Elongation factor Tu domain 2 PF547_04645 PF00679 Elongation factor G C-terminus PF547_04645 PF06421 GTP-binding protein LepA C-terminus PF547_04650 PF10502 Signal peptidase, peptidase S26 PF547_04660 PF14622 Ribonuclease-III-like PF547_04660 PF00035 Double-stranded RNA binding motif PF547_04665 PF01926 50S ribosome-binding GTPase PF547_04665 PF07650 KH domain PF547_04675 PF11967 Recombination protein O N terminal PF547_04675 PF02565 Recombination protein O C terminal PF547_04680 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ PF547_04685 PF06175 tRNA-(MS[2]IO[6]A)-hydroxylase (MiaE) PF547_04690 PF00106 short chain dehydrogenase PF547_04730 PF17151 Periplasmic sensor domain PF547_04730 PF00990 Diguanylate cyclase, GGDEF domain PF547_04740 PF04851 Type III restriction enzyme, res subunit PF547_04740 PF12344 Ultra-violet resistance protein B PF547_04740 PF17757 UvrB interaction domain PF547_04740 PF00271 Helicase conserved C-terminal domain PF547_04740 PF02151 UvrB/uvrC motif PF547_04750 PF00892 EamA-like transporter family PF547_04755 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain PF547_04755 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain PF547_04770 PF01018 GTP1/OBG PF547_04770 PF01926 50S ribosome-binding GTPase PF547_04775 PF01472 PUA domain PF547_04775 PF00696 Amino acid kinase family PF547_04785 PF07759 Protein of unknown function (DUF1615) PF547_04790 PF01207 Dihydrouridine synthase (Dus) PF547_04795 PF03060 Nitronate monooxygenase PF547_04810 PF02350 UDP-N-acetylglucosamine 2-epimerase PF547_04840 PF00875 DNA photolyase PF547_04840 PF03441 FAD binding domain of DNA photolyase PF547_04845 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase PF547_04850 PF07992 Pyridine nucleotide-disulphide oxidoreductase PF547_04855 PF07943 Penicillin-binding protein 5, C-terminal domain PF547_04855 PF00768 D-alanyl-D-alanine carboxypeptidase PF547_04865 PF03971 Monomeric isocitrate dehydrogenase PF547_04870 PF00849 RNA pseudouridylate synthase PF547_04875 PF00180 Isocitrate/isopropylmalate dehydrogenase PF547_04895 PF06779 Uncharacterised MFS-type transporter YbfB PF547_04900 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family PF547_04900 PF03466 LysR substrate binding domain PF547_04905 PF00375 Sodium:dicarboxylate symporter family PF547_04910 PF02567 Phenazine biosynthesis-like protein PF547_04915 PF00675 Insulinase (Peptidase family M16) PF547_04915 PF05193 Peptidase M16 inactive domain PF547_04940 PF02581 Thiamine monophosphate synthase PF547_04945 PF00202 Aminotransferase class-III PF547_04955 PF00849 RNA pseudouridylate synthase PF547_04960 PF00271 Helicase conserved C-terminal domain PF547_04960 PF12137 RNA polymerase recycling family C-terminal PF547_04960 PF00176 SNF2 family N-terminal domain PF547_04960 PF18337 RapA N-terminal Tudor like domain PF547_04960 PF18339 RapA N-terminal Tudor like domain 1 PF547_04970 PF00440 Bacterial regulatory proteins, tetR family PF547_04975 PF00111 2Fe-2S iron-sulfur cluster binding domain PF547_04975 PF00175 Oxidoreductase NAD-binding domain PF547_04975 PF00970 Oxidoreductase FAD-binding domain PF547_04980 PF00487 Fatty acid desaturase PF547_04990 PF17754 MftR C-terminal domain PF547_04990 PF00440 Bacterial regulatory proteins, tetR family PF547_05000 PF00202 Aminotransferase class-III PF547_05005 PF00282 Pyridoxal-dependent decarboxylase conserved domain PF547_05010 PF00171 Aldehyde dehydrogenase family PF547_05015 PF01037 Lrp/AsnC ligand binding domain PF547_05020 PF00205 Thiamine pyrophosphate enzyme, central domain PF547_05020 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain PF547_05020 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain PF547_05025 PF00324 Amino acid permease PF547_05030 PF12849 PBP superfamily domain PF547_05035 PF00528 Binding-protein-dependent transport system inner membrane component PF547_05040 PF00528 Binding-protein-dependent transport system inner membrane component PF547_05045 PF00005 ABC transporter PF547_05050 PF01343 Peptidase family S49 PF547_05050 PF08496 Peptidase family S49 N-terminal PF547_05060 PF00872 Transposase, Mutator family PF547_05070 PF08328 Adenylosuccinate lyase C-terminal PF547_05070 PF00206 Lyase PF547_05075 PF04356 Protein of unknown function (DUF489) PF547_05085 PF00293 NUDIX domain PF547_05085 PF13344 Haloacid dehalogenase-like hydrolase PF547_05090 PF00132 Bacterial transferase hexapeptide (six repeats) PF547_05095 PF07943 Penicillin-binding protein 5, C-terminal domain PF547_05095 PF00768 D-alanyl-D-alanine carboxypeptidase PF547_05110 PF01975 Survival protein SurE PF547_05115 PF01476 LysM domain PF547_05115 PF01551 Peptidase family M23 PF547_05120 PF03466 LysR substrate binding domain PF547_05120 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family PF547_05125 PF13654 AAA domain PF547_05125 PF05362 Lon protease (S16) C-terminal proteolytic domain PF547_05130 PF07690 Major Facilitator Superfamily PF547_05135 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily PF547_05140 PF13593 SBF-like CPA transporter family (DUF4137) PF547_05145 PF01197 Ribosomal protein L31 PF547_05160 PF04055 Radical SAM superfamily PF547_05165 PF01132 Elongation factor P (EF-P) OB domain PF547_05165 PF08207 Elongation factor P (EF-P) KOW-like domain PF547_05165 PF09285 Elongation factor P, C-terminal PF547_05170 PF02554 Carbon starvation protein CstA PF547_05170 PF13722 5TM C-terminal transporter carbon starvation CstA PF547_05175 PF04328 Selenoprotein, putative PF547_05210 PF06018 CodY GAF-like domain PF547_05210 PF17853 GGDEF-like domain PF547_05210 PF13556 PucR C-terminal helix-turn-helix domain PF547_05225 PF00171 Aldehyde dehydrogenase family PF547_05230 PF00324 Amino acid permease PF547_05235 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family PF547_05235 PF03466 LysR substrate binding domain PF547_05240 PF02028 BCCT, betaine/carnitine/choline family transporter PF547_05245 PF02028 BCCT, betaine/carnitine/choline family transporter PF547_05250 PF00355 Rieske [2Fe-2S] domain PF547_05250 PF00848 Ring hydroxylating alpha subunit (catalytic domain) PF547_05255 PF00171 Aldehyde dehydrogenase family PF547_05265 PF07992 Pyridine nucleotide-disulphide oxidoreductase PF547_05265 PF18113 Rubredoxin binding C-terminal domain PF547_05270 PF01266 FAD dependent oxidoreductase PF547_05270 PF05430 S-adenosyl-L-methionine-dependent methyltransferase PF547_05290 PF00892 EamA-like transporter family PF547_05300 PF02604 Antitoxin Phd_YefM, type II toxin-antitoxin system PF547_05305 PF00083 Sugar (and other) transporter PF547_05310 PF13378 Enolase C-terminal domain-like PF547_05310 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain PF547_05315 PF02801 Beta-ketoacyl synthase, C-terminal domain PF547_05315 PF08990 Erythronolide synthase docking PF547_05315 PF09277 Erythronolide synthase, docking PF547_05315 PF16197 Ketoacyl-synthetase C-terminal extension PF547_05315 PF00109 Beta-ketoacyl synthase, N-terminal domain PF547_05315 PF08659 KR domain PF547_05315 PF00550 Phosphopantetheine attachment site PF547_05315 PF14765 Polyketide synthase dehydratase PF547_05315 PF08240 Alcohol dehydrogenase GroES-like domain PF547_05315 PF00698 Acyl transferase domain PF547_05320 PF00440 Bacterial regulatory proteins, tetR family PF547_05340 PF17954 Quercetinase C-terminal cupin domain PF547_05340 PF02678 Pirin PF547_05350 PF08348 YheO-like PAS domain PF547_05350 PF13309 HTH domain PF547_05360 PF00550 Phosphopantetheine attachment site PF547_05360 PF13193 AMP-binding enzyme C-terminal domain PF547_05360 PF00501 AMP-binding enzyme PF547_05360 PF00668 Condensation domain PF547_05365 PF00975 Thioesterase domain PF547_05365 PF00550 Phosphopantetheine attachment site PF547_05365 PF00668 Condensation domain PF547_05365 PF13193 AMP-binding enzyme C-terminal domain PF547_05365 PF00501 AMP-binding enzyme PF547_05375 PF01032 FecCD transport family PF547_05380 PF01032 FecCD transport family PF547_05385 PF00005 ABC transporter PF547_05390 PF01497 Periplasmic binding protein PF547_05395 PF07715 TonB-dependent Receptor Plug Domain PF547_05395 PF00593 TonB dependent receptor PF547_05400 PF13434 L-lysine 6-monooxygenase (NADPH-requiring) PF547_05405 PF00501 AMP-binding enzyme PF547_05405 PF00668 Condensation domain PF547_05405 PF00550 Phosphopantetheine attachment site PF547_05410 PF13193 AMP-binding enzyme C-terminal domain PF547_05410 PF00501 AMP-binding enzyme PF547_05415 PF00857 Isochorismatase family PF547_05415 PF00550 Phosphopantetheine attachment site PF547_05420 PF00282 Pyridoxal-dependent decarboxylase conserved domain PF547_05430 PF00005 ABC transporter PF547_05435 PF00005 ABC transporter PF547_05440 PF00975 Thioesterase domain PF547_05450 PF00425 chorismate binding enzyme PF547_05460 PF01208 Uroporphyrinogen decarboxylase (URO-D) PF547_05465 PF05675 Protein of unknown function (DUF817) PF547_05480 PF00144 Beta-lactamase PF547_05490 PF01227 GTP cyclohydrolase I PF547_05495 PF01799 [2Fe-2S] binding domain PF547_05495 PF00111 2Fe-2S iron-sulfur cluster binding domain PF547_05500 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase PF547_05500 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain PF547_05515 PF00218 Indole-3-glycerol phosphate synthase PF547_05520 PF02885 Glycosyl transferase family, helical bundle domain PF547_05520 PF00591 Glycosyl transferase family, a/b domain PF547_05530 PF11838 ERAP1-like C-terminal domain PF547_05530 PF01433 Peptidase family M1 domain PF547_05535 PF00117 Glutamine amidotransferase class-I PF547_05600 PF02384 N-6 DNA Methylase PF547_05600 PF12161 HsdM N-terminal domain PF547_05635 PF03796 DnaB-like helicase C terminal domain PF547_05635 PF14528 LAGLIDADG-like domain PF547_05635 PF00772 DnaB-like helicase N terminal domain PF547_05855 PF01476 LysM domain PF547_05855 PF08525 Opacity-associated protein A N-terminal motif PF547_05855 PF01551 Peptidase family M23 PF547_05900 PF13356 Arm DNA-binding domain PF547_05900 PF00589 Phage integrase family PF547_05910 PF00854 POT family PF547_05915 PF03951 Glutamine synthetase, beta-Grasp domain PF547_05915 PF00120 Glutamine synthetase, catalytic domain PF547_05920 PF04345 Chorismate lyase PF547_05925 PF01040 UbiA prenyltransferase family PF547_05960 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain PF547_05960 PF02777 Iron/manganese superoxide dismutases, C-terminal domain PF547_05965 PF01784 NIF3 (NGG1p interacting factor 3) PF547_05970 PF13180 PDZ domain PF547_05975 PF01743 Poly A polymerase head domain PF547_05975 PF12627 Probable RNA and SrmB- binding site of polymerase A PF547_05980 PF00390 Malic enzyme, N-terminal domain PF547_05980 PF03949 Malic enzyme, NAD binding domain PF547_05980 PF01515 Phosphate acetyl/butaryl transferase PF547_05985 PF00563 EAL domain PF547_05985 PF00990 Diguanylate cyclase, GGDEF domain PF547_05985 PF03707 Bacterial signalling protein N terminal repeat PF547_05990 PF04452 RNA methyltransferase PF547_05995 PF02219 Methylenetetrahydrofolate reductase PF547_06000 PF05221 S-adenosyl-L-homocysteine hydrolase PF547_06000 PF00670 S-adenosyl-L-homocysteine hydrolase, NAD binding domain PF547_06015 PF00441 Acyl-CoA dehydrogenase, C-terminal domain PF547_06015 PF02771 Acyl-CoA dehydrogenase, N-terminal domain PF547_06015 PF09317 Domain of unknown function (DUF1974) PF547_06020 PF04055 Radical SAM superfamily PF547_06025 PF07992 Pyridine nucleotide-disulphide oxidoreductase PF547_06025 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain PF547_06035 PF07690 Major Facilitator Superfamily PF547_06045 PF00557 Metallopeptidase family M24 PF547_06050 PF00318 Ribosomal protein S2 PF547_06055 PF00889 Elongation factor TS PF547_06065 PF12833 Helix-turn-helix domain PF547_06085 PF03330 Lytic transglycolase PF547_06085 PF05036 Sporulation related domain PF547_06090 PF13406 Transglycosylase SLT domain PF547_06095 PF01098 Cell cycle protein PF547_06105 PF14819 Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term PF547_06105 PF14489 QueF-like protein PF547_06110 PF01061 ABC-2 type transporter PF547_06115 PF00005 ABC transporter PF547_06145 PF00464 Serine hydroxymethyltransferase PF547_06150 PF02321 Outer membrane efflux protein PF547_06155 PF00873 AcrB/AcrD/AcrF family PF547_06160 PF13533 Biotin-lipoyl like PF547_06165 PF03466 LysR substrate binding domain PF547_06165 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family PF547_06170 PF00497 Bacterial extracellular solute-binding proteins, family 3 PF547_06175 PF00528 Binding-protein-dependent transport system inner membrane component PF547_06180 PF00528 Binding-protein-dependent transport system inner membrane component PF547_06185 PF00005 ABC transporter PF547_06190 PF00893 Small Multidrug Resistance protein PF547_06195 PF00037 4Fe-4S binding domain PF547_06200 PF01136 Peptidase family U32 PF547_06200 PF16325 Peptidase family U32 C-terminal domain PF547_06205 PF00155 Aminotransferase class I and II PF547_06205 PF00392 Bacterial regulatory proteins, gntR family PF547_06210 PF02567 Phenazine biosynthesis-like protein PF547_06215 PF00970 Oxidoreductase FAD-binding domain PF547_06215 PF00175 Oxidoreductase NAD-binding domain PF547_06220 PF18389 TrmO C-terminal domain PF547_06220 PF01980 tRNA-methyltransferase O PF547_06230 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain PF547_06230 PF00437 Type II/IV secretion system protein PF547_06240 PF00486 Transcriptional regulatory protein, C terminal PF547_06240 PF00072 Response regulator receiver domain PF547_06245 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PF547_06245 PF08521 Two-component sensor kinase N-terminal PF547_06245 PF00512 His Kinase A (phospho-acceptor) domain PF547_06255 PF00293 NUDIX domain PF547_06265 PF00905 Penicillin binding protein transpeptidase domain PF547_06265 PF14814 Bifunctional transglycosylase second domain PF547_06265 PF00912 Transglycosylase PF547_06270 PF01513 ATP-NAD kinase PF547_06275 PF07023 Protein of unknown function (DUF1315) PF547_06280 PF02885 Glycosyl transferase family, helical bundle domain PF547_06280 PF00591 Glycosyl transferase family, a/b domain PF547_06285 PF00375 Sodium:dicarboxylate symporter family PF547_06290 PF00441 Acyl-CoA dehydrogenase, C-terminal domain PF547_06290 PF02770 Acyl-CoA dehydrogenase, middle domain PF547_06290 PF02771 Acyl-CoA dehydrogenase, N-terminal domain PF547_06295 PF00756 Putative esterase PF547_06300 PF01842 ACT domain PF547_06300 PF00800 Prephenate dehydratase PF547_06300 PF01817 Chorismate mutase type II PF547_06305 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) PF547_06315 PF01546 Peptidase family M20/M25/M40 PF547_06315 PF07687 Peptidase dimerisation domain PF547_06320 PF12706 Beta-lactamase superfamily domain PF547_06330 PF03883 Peroxide stress protein YaaA PF547_06340 PF05690 Thiazole biosynthesis protein ThiG PF547_06350 PF04241 Protein of unknown function (DUF423) PF547_06355 PF00140 Sigma-70 factor, region 1.2 PF547_06355 PF04542 Sigma-70 region 2 PF547_06355 PF04545 Sigma-70, region 4 PF547_06370 PF00313 'Cold-shock' DNA-binding domain PF547_06375 PF00271 Helicase conserved C-terminal domain PF547_06375 PF00270 DEAD/DEAH box helicase PF547_06385 PF00881 Nitroreductase family PF547_06390 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus PF547_06390 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus PF547_06410 PF01180 Dihydroorotate dehydrogenase PF547_06415 PF02674 Colicin V production protein PF547_06420 PF00156 Phosphoribosyl transferase domain PF547_06435 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain PF547_06435 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain PF547_06440 PF01435 Peptidase family M48 PF547_06445 PF09424 Yqey-like protein PF547_06450 PF01165 Ribosomal protein S21 PF547_06455 PF00814 Glycoprotease family PF547_06475 PF00069 Protein kinase domain PF547_06500 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family PF547_06500 PF03466 LysR substrate binding domain PF547_06505 PF00202 Aminotransferase class-III PF547_06510 PF00171 Aldehyde dehydrogenase family PF547_06515 PF00324 Amino acid permease PF547_06550 PF04076 Bacterial OB fold (BOF) protein PF547_06575 PF00561 alpha/beta hydrolase fold PF547_06580 PF03616 Sodium/glutamate symporter PF547_06590 PF00392 Bacterial regulatory proteins, gntR family PF547_06590 PF07729 FCD domain PF547_06640 PF00083 Sugar (and other) transporter PF547_06640 PF08946 Osmosensory transporter coiled coil PF547_06665 PF00155 Aminotransferase class I and II PF547_06670 PF02080 TrkA-C domain PF547_06670 PF06826 Predicted Permease Membrane Region PF547_06680 PF04403 Paraquat-inducible protein A PF547_06685 PF02470 MlaD protein PF547_06700 PF07091 Ribosomal RNA methyltransferase (FmrO) PF547_06715 PF12848 ABC transporter PF547_06715 PF00005 ABC transporter PF547_06720 PF01636 Phosphotransferase enzyme family PF547_06730 PF13005 zinc-finger binding domain of transposase IS66 PF547_06730 PF03050 Transposase IS66 family PF547_06730 PF13007 Transposase C of IS166 homeodomain PF547_06730 PF13817 IS66 C-terminal element PF547_06755 PF13610 DDE domain PF547_06770 PF00375 Sodium:dicarboxylate symporter family PF547_06780 PF16123 Hydroxyacylglutathione hydrolase C-terminus PF547_06780 PF00753 Metallo-beta-lactamase superfamily PF547_06785 PF00528 Binding-protein-dependent transport system inner membrane component PF547_06790 PF00005 ABC transporter PF547_06790 PF09383 NIL domain PF547_06795 PF03180 NLPA lipoprotein PF547_06800 PF02844 Phosphoribosylglycinamide synthetase, N domain PF547_06800 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain PF547_06800 PF02843 Phosphoribosylglycinamide synthetase, C domain PF547_06805 PF02142 MGS-like domain PF547_06805 PF01808 AICARFT/IMPCHase bienzyme PF547_06810 PF02954 Bacterial regulatory protein, Fis family PF547_06830 PF13932 GidA associated domain PF547_06830 PF01134 Glucose inhibited division protein A PF547_06840 PF14403 Circularly permuted ATP-grasp type 2 PF547_06850 PF08379 Bacterial transglutaminase-like N-terminal region PF547_06850 PF01841 Transglutaminase-like superfamily PF547_06860 PF00842 Alanine racemase, C-terminal domain PF547_06860 PF01168 Alanine racemase, N-terminal domain PF547_06865 PF00772 DnaB-like helicase N terminal domain PF547_06865 PF03796 DnaB-like helicase C terminal domain PF547_06870 PF03948 Ribosomal protein L9, C-terminal domain PF547_06870 PF01281 Ribosomal protein L9, N-terminal domain PF547_06875 PF01084 Ribosomal protein S18 PF547_06880 PF01250 Ribosomal protein S6 PF547_06885 PF01040 UbiA prenyltransferase family PF547_06890 PF03626 Prokaryotic Cytochrome C oxidase subunit IV PF547_06895 PF00510 Cytochrome c oxidase subunit III PF547_06900 PF00115 Cytochrome C and Quinol oxidase polypeptide I PF547_06905 PF06481 COX Aromatic Rich Motif PF547_06905 PF00116 Cytochrome C oxidase subunit II, periplasmic domain PF547_06915 PF00391 PEP-utilising enzyme, mobile domain PF547_06915 PF02896 PEP-utilising enzyme, TIM barrel domain PF547_06915 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain PF547_06920 PF03618 Kinase/pyrophosphorylase PF547_06930 PF14883 Hypothetical glycosyl hydrolase family 13 PF547_06930 PF01522 Polysaccharide deacetylase PF547_06935 PF00535 Glycosyl transferase family 2 PF547_06940 PF13994 PgaD-like protein PF547_06950 PF00296 Luciferase-like monooxygenase PF547_06965 PF03466 LysR substrate binding domain PF547_06965 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family PF547_06975 PF03462 PCRF domain PF547_06975 PF00472 RF-1 domain PF547_06980 PF17827 PrmC N-terminal domain PF547_06980 PF13847 Methyltransferase domain PF547_06985 PF00528 Binding-protein-dependent transport system inner membrane component PF547_06995 PF12833 Helix-turn-helix domain PF547_07000 PF00106 short chain dehydrogenase PF547_07005 PF00441 Acyl-CoA dehydrogenase, C-terminal domain PF547_07005 PF02771 Acyl-CoA dehydrogenase, N-terminal domain PF547_07005 PF02770 Acyl-CoA dehydrogenase, middle domain PF547_07010 PF13193 AMP-binding enzyme C-terminal domain PF547_07010 PF00501 AMP-binding enzyme PF547_07015 PF01613 Flavin reductase like domain PF547_07020 PF00899 ThiF family PF547_07025 PF03109 ABC1 family PF547_07040 PF03814 Potassium-transporting ATPase A subunit PF547_07050 PF02669 K+-transporting ATPase, c chain PF547_07055 PF00512 His Kinase A (phospho-acceptor) domain PF547_07055 PF02702 Osmosensitive K+ channel His kinase sensor domain PF547_07055 PF13493 Domain of unknown function (DUF4118) PF547_07055 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PF547_07060 PF00072 Response regulator receiver domain PF547_07060 PF00486 Transcriptional regulatory protein, C terminal PF547_07065 PF00120 Glutamine synthetase, catalytic domain PF547_07075 PF03232 Ubiquinone biosynthesis protein COQ7 PF547_07080 PF07690 Major Facilitator Superfamily PF547_07085 PF17243 POTRA domain TamA domain 1 PF547_07085 PF07244 Surface antigen variable number repeat PF547_07085 PF01103 Surface antigen PF547_07100 PF11791 Aconitate B N-terminal domain PF547_07100 PF06434 Aconitate hydratase 2 N-terminus PF547_07100 PF00330 Aconitase family (aconitate hydratase) PF547_07110 PF00520 Ion transport protein PF547_07110 PF00027 Cyclic nucleotide-binding domain PF547_07115 PF07690 Major Facilitator Superfamily PF547_07135 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family PF547_07135 PF03466 LysR substrate binding domain PF547_07140 PF04284 Protein of unknown function (DUF441) PF547_07150 PF01479 S4 domain PF547_07150 PF00849 RNA pseudouridylate synthase PF547_07165 PF00849 RNA pseudouridylate synthase PF547_07165 PF01479 S4 domain PF547_07170 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE PF547_07185 PF17209 Hfq protein PF547_07195 PF00881 Nitroreductase family PF547_07205 PF00149 Calcineurin-like phosphoesterase PF547_07210 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD PF547_07215 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain PF547_07215 PF00749 tRNA synthetases class I (E and Q), catalytic domain PF547_07220 PF00958 GMP synthase C terminal domain PF547_07220 PF02540 NAD synthase PF547_07220 PF00117 Glutamine amidotransferase class-I PF547_07225 PF05985 Ethanolamine ammonia-lyase light chain (EutC) PF547_07230 PF06751 Ethanolamine ammonia lyase large subunit (EutB) PF547_07235 PF13520 Amino acid permease PF547_07240 PF00171 Aldehyde dehydrogenase family PF547_07255 PF00465 Iron-containing alcohol dehydrogenase PF547_07260 PF05970 PIF1-like helicase PF547_07260 PF14493 Helix-turn-helix domain PF547_07270 PF06445 GyrI-like small molecule binding domain PF547_07275 PF02110 Hydroxyethylthiazole kinase family PF547_07290 PF17432 Domain of unknown function (DUF3458_C) ARM repeats PF547_07290 PF01433 Peptidase family M1 domain PF547_07290 PF11940 Domain of unknown function (DUF3458) Ig-like fold PF547_07320 PF01817 Chorismate mutase type II PF547_07325 PF01037 Lrp/AsnC ligand binding domain PF547_07340 PF00440 Bacterial regulatory proteins, tetR family PF547_07345 PF07715 TonB-dependent Receptor Plug Domain PF547_07345 PF00593 TonB dependent receptor PF547_07350 PF00924 Mechanosensitive ion channel PF547_07385 PF07715 TonB-dependent Receptor Plug Domain PF547_07385 PF00593 TonB dependent receptor PF547_07405 PF00005 ABC transporter PF547_07405 PF12848 ABC transporter PF547_07410 PF00582 Universal stress protein family PF547_07435 PF00690 Cation transporter/ATPase, N-terminus PF547_07435 PF00689 Cation transporting ATPase, C-terminus PF547_07440 PF02308 MgtC family PF547_07445 PF03594 Benzoate membrane transport protein PF547_07450 PF01037 Lrp/AsnC ligand binding domain PF547_07455 PF01810 LysE type translocator PF547_07460 PF00923 Transaldolase/Fructose-6-phosphate aldolase PF547_07465 PF03466 LysR substrate binding domain PF547_07465 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family PF547_07475 PF00108 Thiolase, N-terminal domain PF547_07475 PF02803 Thiolase, C-terminal domain PF547_07485 PF01575 MaoC like domain PF547_07490 PF00144 Beta-lactamase PF547_07500 PF07690 Major Facilitator Superfamily PF547_07505 PF12169 DNA polymerase III subunits gamma and tau domain III PF547_07505 PF12168 DNA polymerase III subunits tau domain IV DnaB-binding PF547_07505 PF12170 DNA polymerase III tau subunit V interacting with alpha PF547_07510 PF04185 Phosphoesterase family PF547_07510 PF05506 Domain of unknown function (DUF756) PF547_07515 PF03061 Thioesterase superfamily PF547_07520 PF00465 Iron-containing alcohol dehydrogenase PF547_07530 PF01451 Low molecular weight phosphotyrosine protein phosphatase PF547_07535 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain PF547_07535 PF01565 FAD binding domain PF547_07550 PF01645 Conserved region in glutamate synthase PF547_07620 PF12161 HsdM N-terminal domain PF547_07620 PF02384 N-6 DNA Methylase PF547_07650 PF01555 DNA methylase PF547_07835 PF01551 Peptidase family M23 PF547_07835 PF08525 Opacity-associated protein A N-terminal motif PF547_07835 PF01476 LysM domain PF547_07880 PF00884 Sulfatase PF547_07880 PF08019 Phosphoethanolamine transferase EptA/EptB PF547_07920 PF05195 Aminopeptidase P, N-terminal domain PF547_07920 PF00557 Metallopeptidase family M24 PF547_07925 PF01494 FAD binding domain PF547_07930 PF01494 FAD binding domain PF547_07940 PF13411 MerR HTH family regulatory protein PF547_07950 PF01810 LysE type translocator PF547_07955 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family PF547_07955 PF03466 LysR substrate binding domain PF547_07965 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases PF547_07970 PF02021 Uncharacterised protein family UPF0102 PF547_07975 PF04972 BON domain PF547_07985 PF00293 NUDIX domain PF547_07985 PF09297 NADH pyrophosphatase zinc ribbon domain PF547_07995 PF00929 Exonuclease PF547_08000 PF01476 LysM domain PF547_08000 PF01476 LysM domain PF547_08000 PF01464 Transglycosylase SLT domain PF547_08000 PF01464 Transglycosylase SLT domain PF547_08005 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle PF547_08010 PF00528 Binding-protein-dependent transport system inner membrane component PF547_08015 PF00528 Binding-protein-dependent transport system inner membrane component PF547_08015 PF12911 N-terminal TM domain of oligopeptide transport permease C PF547_08020 PF08352 Oligopeptide/dipeptide transporter, C-terminal region PF547_08020 PF00005 ABC transporter PF547_08025 PF07992 Pyridine nucleotide-disulphide oxidoreductase PF547_08025 PF00724 NADH:flavin oxidoreductase / NADH oxidase family PF547_08030 PF00593 TonB dependent receptor PF547_08030 PF07715 TonB-dependent Receptor Plug Domain PF547_08040 PF00929 Exonuclease PF547_08045 PF01979 Amidohydrolase family PF547_08050 PF01590 GAF domain PF547_08050 PF00563 EAL domain PF547_08050 PF00990 Diguanylate cyclase, GGDEF domain PF547_08050 PF00360 Phytochrome region PF547_08055 PF00764 Arginosuccinate synthase PF547_08060 PF00724 NADH:flavin oxidoreductase / NADH oxidase family PF547_08060 PF07992 Pyridine nucleotide-disulphide oxidoreductase PF547_08075 PF13610 DDE domain PF547_08080 PF02796 Helix-turn-helix domain of resolvase PF547_08080 PF00239 Resolvase, N terminal domain PF547_08090 PF13610 DDE domain PF547_08100 PF00239 Resolvase, N terminal domain PF547_08100 PF02796 Helix-turn-helix domain of resolvase PF547_08105 PF13610 DDE domain PF547_08110 PF17932 Tetracyclin repressor-like, C-terminal domain PF547_08110 PF00440 Bacterial regulatory proteins, tetR family PF547_08115 PF02678 Pirin PF547_08115 PF17954 Quercetinase C-terminal cupin domain PF547_08125 PF00106 short chain dehydrogenase PF547_08130 PF00743 Flavin-binding monooxygenase-like PF547_08140 PF00860 Permease family PF547_08145 PF00962 Adenosine/AMP deaminase PF547_08150 PF01292 Prokaryotic cytochrome b561 PF547_08160 PF01351 Ribonuclease HII PF547_08165 PF02599 Global regulator protein family PF547_08170 PF00696 Amino acid kinase family PF547_08170 PF01842 ACT domain PF547_08170 PF13840 ACT domain PF547_08175 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain PF547_08175 PF02272 DHHA1 domain PF547_08175 PF01411 tRNA synthetases class II (A) PF547_08180 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain PF547_08180 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain PF547_08185 PF13393 Histidyl-tRNA synthetase PF547_08190 PF00709 Adenylosuccinate synthetase PF547_08205 PF00248 Aldo/keto reductase family PF547_08215 PF13545 Crp-like helix-turn-helix domain PF547_08215 PF00027 Cyclic nucleotide-binding domain PF547_08225 PF02566 OsmC-like protein PF547_08240 PF17871 AAA lid domain PF547_08240 PF00004 ATPase family associated with various cellular activities (AAA) PF547_08240 PF07724 AAA domain (Cdc48 subfamily) PF547_08240 PF02861 Clp amino terminal domain, pathogenicity island component PF547_08240 PF10431 C-terminal, D2-small domain, of ClpB protein PF547_08255 PF10672 S-adenosylmethionine-dependent methyltransferase PF547_08255 PF02926 THUMP domain PF547_08255 PF01170 Putative RNA methylase family UPF0020 PF547_08265 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain PF547_08265 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain PF547_08270 PF01979 Amidohydrolase family PF547_08275 PF00691 OmpA family PF547_08275 PF13488 Glycine zipper PF547_08285 PF00043 Glutathione S-transferase, C-terminal domain PF547_08285 PF13417 Glutathione S-transferase, N-terminal domain PF547_08290 PF02390 Putative methyltransferase PF547_08300 PF00043 Glutathione S-transferase, C-terminal domain PF547_08300 PF02798 Glutathione S-transferase, N-terminal domain PF547_08310 PF13192 Thioredoxin domain PF547_08310 PF07992 Pyridine nucleotide-disulphide oxidoreductase PF547_08330 PF10417 C-terminal domain of 1-Cys peroxiredoxin PF547_08330 PF00578 AhpC/TSA family PF547_08335 PF00271 Helicase conserved C-terminal domain PF547_08335 PF00270 DEAD/DEAH box helicase PF547_08335 PF11898 Domain of unknown function (DUF3418) PF547_08335 PF04408 Helicase associated domain (HA2) PF547_08335 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold PF547_08340 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III PF547_08340 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal PF547_08350 PF07690 Major Facilitator Superfamily PF547_08355 PF03594 Benzoate membrane transport protein PF547_08360 PF00106 short chain dehydrogenase PF547_08365 PF00970 Oxidoreductase FAD-binding domain PF547_08365 PF00111 2Fe-2S iron-sulfur cluster binding domain PF547_08365 PF00175 Oxidoreductase NAD-binding domain PF547_08370 PF00866 Ring hydroxylating beta subunit PF547_08375 PF00355 Rieske [2Fe-2S] domain PF547_08375 PF00848 Ring hydroxylating alpha subunit (catalytic domain) PF547_08385 PF03466 LysR substrate binding domain PF547_08385 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family PF547_08395 PF00403 Heavy-metal-associated domain PF547_08400 PF09278 MerR, DNA binding PF547_08400 PF00376 MerR family regulatory protein PF547_08435 PF02601 Exonuclease VII, large subunit PF547_08435 PF13742 OB-fold nucleic acid binding domain PF547_08470 PF01810 LysE type translocator PF547_08475 PF00313 'Cold-shock' DNA-binding domain PF547_08485 PF03807 NADP oxidoreductase coenzyme F420-dependent PF547_08485 PF14748 Pyrroline-5-carboxylate reductase dimerisation PF547_08510 PF07690 Major Facilitator Superfamily PF547_08515 PF01638 HxlR-like helix-turn-helix PF547_08540 PF01406 tRNA synthetases class I (C) catalytic domain PF547_08540 PF09190 DALR domain PF547_08545 PF01380 SIS domain PF547_08545 PF00571 CBS domain PF547_08560 PF03968 OstA-like protein PF547_08565 PF00005 ABC transporter PF547_08565 PF12399 Branched-chain amino acid ATP-binding cassette transporter PF547_08570 PF02321 Outer membrane efflux protein PF547_08575 PF00005 ABC transporter PF547_08575 PF00664 ABC transporter transmembrane region PF547_08575 PF03412 Peptidase C39 family PF547_08585 PF01205 Uncharacterized protein family UPF0029 PF547_08590 PF00132 Bacterial transferase hexapeptide (six repeats) PF547_08600 PF01596 O-methyltransferase PF547_08610 PF11953 Domain of unknown function (DUF3470) PF547_08610 PF00037 4Fe-4S binding domain PF547_08620 PF01624 MutS domain I PF547_08620 PF05188 MutS domain II PF547_08620 PF05192 MutS domain III PF547_08620 PF05190 MutS family domain IV PF547_08620 PF00488 MutS domain V PF547_08625 PF01037 Lrp/AsnC ligand binding domain PF547_08630 PF00892 EamA-like transporter family PF547_08635 PF03707 Bacterial signalling protein N terminal repeat PF547_08635 PF00990 Diguanylate cyclase, GGDEF domain PF547_08635 PF00563 EAL domain PF547_08640 PF03279 Bacterial lipid A biosynthesis acyltransferase PF547_08655 PF07690 Major Facilitator Superfamily PF547_08675 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain PF547_08675 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain PF547_08695 PF13419 Haloacid dehalogenase-like hydrolase PF547_08705 PF04717 Type VI secretion system, phage-baseplate injector PF547_08705 PF13296 Putative type VI secretion system Rhs element Vgr PF547_08705 PF10106 Uncharacterized protein conserved in bacteria (DUF2345) PF547_08710 PF03527 RHS protein PF547_08710 PF05593 RHS Repeat PF547_08725 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family PF547_08725 PF03466 LysR substrate binding domain PF547_08730 PF01566 Natural resistance-associated macrophage protein PF547_08735 PF03746 LamB/YcsF family PF547_08740 PF07286 Protein of unknown function (DUF1445) PF547_08750 PF00364 Biotin-requiring enzyme PF547_08750 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain PF547_08750 PF00289 Biotin carboxylase, N-terminal domain PF547_08750 PF02785 Biotin carboxylase C-terminal domain PF547_08755 PF00654 Voltage gated chloride channel PF547_08775 PF00440 Bacterial regulatory proteins, tetR family PF547_08785 PF00107 Zinc-binding dehydrogenase PF547_08785 PF13823 Alcohol dehydrogenase GroES-associated PF547_08785 PF08240 Alcohol dehydrogenase GroES-like domain PF547_08800 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain PF547_08800 PF02785 Biotin carboxylase C-terminal domain PF547_08800 PF00289 Biotin carboxylase, N-terminal domain PF547_08805 PF02525 Flavodoxin-like fold PF547_08825 PF08753 NikR C terminal nickel binding domain PF547_08825 PF01402 Ribbon-helix-helix protein, copG family PF547_08830 PF01425 Amidase PF547_08835 PF00497 Bacterial extracellular solute-binding proteins, family 3 PF547_08840 PF00005 ABC transporter PF547_08865 PF05943 Type VI secretion protein, EvpB/VC_A0108, tail sheath PF547_08880 PF05947 Type VI secretion system, TssF PF547_08895 PF06761 Intracellular multiplication and human macrophage-killing PF547_08895 PF14331 ImcF-related N-terminal domain PF547_08895 PF06744 Type VI secretion protein IcmF C-terminal PF547_08905 PF00691 OmpA family PF547_08905 PF01389 OmpA-like transmembrane domain PF547_08915 PF00004 ATPase family associated with various cellular activities (AAA) PF547_08915 PF07724 AAA domain (Cdc48 subfamily) PF547_08915 PF17871 AAA lid domain PF547_08915 PF10431 C-terminal, D2-small domain, of ClpB protein PF547_08920 PF06812 ImpA, N-terminal, type VI secretion system PF547_08925 PF05936 Bacterial Type VI secretion, VC_A0110, EvfL, ImpJ, VasE PF547_08945 PF03466 LysR substrate binding domain PF547_08945 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family PF547_08955 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region PF547_08960 PF07690 Major Facilitator Superfamily PF547_08975 PF02677 Epoxyqueuosine reductase QueH PF547_08990 PF00376 MerR family regulatory protein PF547_08990 PF09278 MerR, DNA binding PF547_09000 PF00701 Dihydrodipicolinate synthetase family PF547_09010 PF00392 Bacterial regulatory proteins, gntR family PF547_09015 PF05544 Proline racemase PF547_09020 PF01266 FAD dependent oxidoreductase PF547_09030 PF04324 BFD-like [2Fe-2S] binding domain PF547_09030 PF07992 Pyridine nucleotide-disulphide oxidoreductase PF547_09040 PF00083 Sugar (and other) transporter PF547_09045 PF00171 Aldehyde dehydrogenase family PF547_09050 PF13520 Amino acid permease PF547_09055 PF03313 Serine dehydratase alpha chain PF547_09055 PF03315 Serine dehydratase beta chain PF547_09060 PF00171 Aldehyde dehydrogenase family PF547_09060 PF01575 MaoC like domain PF547_09065 PF05138 Phenylacetic acid catabolic protein PF547_09070 PF06243 Phenylacetic acid degradation B PF547_09075 PF05138 Phenylacetic acid catabolic protein PF547_09080 PF01883 Iron-sulfur cluster assembly protein PF547_09085 PF00175 Oxidoreductase NAD-binding domain PF547_09085 PF00111 2Fe-2S iron-sulfur cluster binding domain PF547_09085 PF00970 Oxidoreductase FAD-binding domain PF547_09090 PF00378 Enoyl-CoA hydratase/isomerase PF547_09095 PF00378 Enoyl-CoA hydratase/isomerase PF547_09100 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain PF547_09100 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain PF547_09100 PF18321 3-hydroxybutyryl-CoA dehydrogenase reduced Rossmann-fold domain PF547_09105 PF02803 Thiolase, C-terminal domain PF547_09105 PF00108 Thiolase, N-terminal domain PF547_09110 PF00501 AMP-binding enzyme PF547_09110 PF14535 AMP-binding enzyme C-terminal domain PF547_09115 PF07848 PaaX-like protein PF547_09115 PF08223 PaaX-like protein C-terminal domain PF547_09120 PF00132 Bacterial transferase hexapeptide (six repeats) PF547_09125 PF03061 Thioesterase superfamily PF547_09160 PF00199 Catalase PF547_09165 PF01292 Prokaryotic cytochrome b561 PF547_09185 PF12697 Alpha/beta hydrolase family PF547_09190 PF01613 Flavin reductase like domain PF547_09195 PF00296 Luciferase-like monooxygenase PF547_09200 PF00171 Aldehyde dehydrogenase family PF547_09210 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin PF547_09220 PF00171 Aldehyde dehydrogenase family PF547_09225 PF02627 Carboxymuconolactone decarboxylase family PF547_09230 PF03466 LysR substrate binding domain PF547_09230 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family PF547_09235 PF02525 Flavodoxin-like fold PF547_09240 PF01614 Bacterial transcriptional regulator PF547_09240 PF09339 IclR helix-turn-helix domain PF547_09245 PF01494 FAD binding domain PF547_09250 PF00392 Bacterial regulatory proteins, gntR family PF547_09250 PF07702 UTRA domain PF547_09260 PF00005 ABC transporter PF547_09260 PF08402 TOBE domain PF547_09265 PF00528 Binding-protein-dependent transport system inner membrane component PF547_09270 PF01266 FAD dependent oxidoreductase PF547_09275 PF00266 Aminotransferase class-V PF547_09280 PF13419 Haloacid dehalogenase-like hydrolase PF547_09285 PF07690 Major Facilitator Superfamily PF547_09290 PF02771 Acyl-CoA dehydrogenase, N-terminal domain PF547_09290 PF02770 Acyl-CoA dehydrogenase, middle domain PF547_09290 PF00441 Acyl-CoA dehydrogenase, C-terminal domain PF547_09295 PF02515 CoA-transferase family III PF547_09300 PF09339 IclR helix-turn-helix domain PF547_09305 PF00378 Enoyl-CoA hydratase/isomerase PF547_09310 PF03060 Nitronate monooxygenase PF547_09315 PF07690 Major Facilitator Superfamily PF547_09320 PF09339 IclR helix-turn-helix domain PF547_09325 PF00108 Thiolase, N-terminal domain PF547_09325 PF02803 Thiolase, C-terminal domain PF547_09330 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain PF547_09330 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain PF547_09330 PF18321 3-hydroxybutyryl-CoA dehydrogenase reduced Rossmann-fold domain PF547_09340 PF00378 Enoyl-CoA hydratase/isomerase PF547_09345 PF00441 Acyl-CoA dehydrogenase, C-terminal domain PF547_09345 PF02771 Acyl-CoA dehydrogenase, N-terminal domain PF547_09345 PF02770 Acyl-CoA dehydrogenase, middle domain PF547_09350 PF07690 Major Facilitator Superfamily PF547_09355 PF01144 Coenzyme A transferase PF547_09360 PF01144 Coenzyme A transferase PF547_09370 PF07690 Major Facilitator Superfamily PF547_09380 PF02770 Acyl-CoA dehydrogenase, middle domain PF547_09380 PF00441 Acyl-CoA dehydrogenase, C-terminal domain PF547_09380 PF12806 Acetyl-CoA dehydrogenase C-terminal like PF547_09380 PF02771 Acyl-CoA dehydrogenase, N-terminal domain PF547_09395 PF03466 LysR substrate binding domain PF547_09395 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family PF547_09400 PF00682 HMGL-like PF547_09405 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain PF547_09405 PF02785 Biotin carboxylase C-terminal domain PF547_09405 PF18140 Propionyl-coenzyme A carboxylase BT domain PF547_09405 PF00289 Biotin carboxylase, N-terminal domain PF547_09405 PF00364 Biotin-requiring enzyme PF547_09410 PF00378 Enoyl-CoA hydratase/isomerase PF547_09415 PF01039 Carboxyl transferase domain PF547_09420 PF02771 Acyl-CoA dehydrogenase, N-terminal domain PF547_09420 PF02770 Acyl-CoA dehydrogenase, middle domain PF547_09420 PF00441 Acyl-CoA dehydrogenase, C-terminal domain PF547_09425 PF00440 Bacterial regulatory proteins, tetR family PF547_09430 PF00501 AMP-binding enzyme PF547_09430 PF13193 AMP-binding enzyme C-terminal domain PF547_09450 PF03466 LysR substrate binding domain PF547_09450 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family PF547_09485 PF02464 Competence-damaged protein PF547_09485 PF18146 Damage-inducible protein CinA KH domain PF547_09485 PF00994 Probable molybdopterin binding domain PF547_09495 PF06628 Catalase-related immune-responsive PF547_09495 PF00199 Catalase PF547_09495 PF18011 C-terminal domain found in long catalases PF547_09520 PF00717 Peptidase S24-like PF547_09530 PF01037 Lrp/AsnC ligand binding domain PF547_09530 PF13404 AsnC-type helix-turn-helix domain PF547_09540 PF00072 Response regulator receiver domain PF547_09540 PF00512 His Kinase A (phospho-acceptor) domain PF547_09540 PF09308 LuxQ, periplasmic PF547_09540 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PF547_09545 PF00072 Response regulator receiver domain PF547_09560 PF00528 Binding-protein-dependent transport system inner membrane component PF547_09565 PF00528 Binding-protein-dependent transport system inner membrane component PF547_09570 PF00005 ABC transporter PF547_09575 PF00497 Bacterial extracellular solute-binding proteins, family 3 PF547_09580 PF00497 Bacterial extracellular solute-binding proteins, family 3 PF547_09590 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family PF547_09590 PF03466 LysR substrate binding domain PF547_09595 PF01810 LysE type translocator PF547_09605 PF00266 Aminotransferase class-V PF547_09615 PF00132 Bacterial transferase hexapeptide (six repeats) PF547_09620 PF00581 Rhodanese-like domain PF547_09630 PF03466 LysR substrate binding domain PF547_09630 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family PF547_09635 PF02798 Glutathione S-transferase, N-terminal domain PF547_09640 PF14834 Glutathione S-transferase, C-terminal domain PF547_09640 PF02798 Glutathione S-transferase, N-terminal domain PF547_09645 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family PF547_09645 PF03466 LysR substrate binding domain PF547_09650 PF03788 LrgA family PF547_09655 PF04172 LrgB-like family PF547_09660 PF00155 Aminotransferase class I and II PF547_09660 PF00392 Bacterial regulatory proteins, gntR family PF547_09675 PF07690 Major Facilitator Superfamily PF547_09680 PF16957 Malonate decarboxylase, alpha subunit, transporter PF547_09685 PF01874 ATP:dephospho-CoA triphosphoribosyl transferase PF547_09690 PF06857 Malonate decarboxylase delta subunit (MdcD) PF547_09695 PF01039 Carboxyl transferase domain PF547_09705 PF10620 Phosphoribosyl-dephospho-CoA transferase MdcG PF547_09710 PF00698 Acyl transferase domain PF547_09725 PF03466 LysR substrate binding domain PF547_09725 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family PF547_09730 PF00155 Aminotransferase class I and II PF547_09730 PF00392 Bacterial regulatory proteins, gntR family PF547_09740 PF02322 Cytochrome bd terminal oxidase subunit II PF547_09745 PF01654 Cytochrome bd terminal oxidase subunit I PF547_09760 PF02770 Acyl-CoA dehydrogenase, middle domain PF547_09760 PF02771 Acyl-CoA dehydrogenase, N-terminal domain PF547_09760 PF08028 Acyl-CoA dehydrogenase, C-terminal domain PF547_09765 PF00296 Luciferase-like monooxygenase PF547_09770 PF00083 Sugar (and other) transporter PF547_09780 PF04069 Substrate binding domain of ABC-type glycine betaine transport system PF547_09785 PF00005 ABC transporter PF547_09790 PF00528 Binding-protein-dependent transport system inner membrane component PF547_09795 PF02668 Taurine catabolism dioxygenase TauD, TfdA family PF547_09800 PF01177 Asp/Glu/Hydantoin racemase PF547_09805 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin PF547_09815 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family PF547_09815 PF03466 LysR substrate binding domain PF547_09825 PF13382 Adenine deaminase C-terminal domain PF547_09825 PF01979 Amidohydrolase family PF547_09835 PF03960 ArsC family PF547_09840 PF01022 Bacterial regulatory protein, arsR family PF547_09845 PF01758 Sodium Bile acid symporter family PF547_09850 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family PF547_09850 PF03466 LysR substrate binding domain PF547_09865 PF13192 Thioredoxin domain PF547_09865 PF07992 Pyridine nucleotide-disulphide oxidoreductase PF547_09880 PF00132 Bacterial transferase hexapeptide (six repeats) PF547_09885 PF00588 SpoU rRNA Methylase family PF547_09890 PF07733 Bacterial DNA polymerase III alpha NTPase domain PF547_09890 PF17657 Bacterial DNA polymerase III alpha subunit finger domain PF547_09890 PF14579 Helix-hairpin-helix motif PF547_09890 PF02811 PHP domain PF547_09890 PF01336 OB-fold nucleic acid binding domain PF547_09895 PF00710 Asparaginase, N-terminal PF547_09895 PF17763 Glutaminase/Asparaginase C-terminal domain PF547_09900 PF00375 Sodium:dicarboxylate symporter family PF547_09905 PF00155 Aminotransferase class I and II PF547_09910 PF01641 SelR domain PF547_09915 PF00255 Glutathione peroxidase PF547_09920 PF12833 Helix-turn-helix domain PF547_09920 PF12852 Cupin PF547_09930 PF00155 Aminotransferase class I and II PF547_09935 PF08335 GlnD PII-uridylyltransferase PF547_09935 PF01966 HD domain PF547_09935 PF01909 Nucleotidyltransferase domain PF547_09940 PF02222 ATP-grasp domain PF547_09950 PF05437 Branched-chain amino acid transport protein (AzlD) PF547_09955 PF03591 AzlC protein PF547_09980 PF06071 Protein of unknown function (DUF933) PF547_09980 PF01926 50S ribosome-binding GTPase PF547_09985 PF00528 Binding-protein-dependent transport system inner membrane component PF547_09990 PF00005 ABC transporter PF547_09990 PF09383 NIL domain PF547_09995 PF03180 NLPA lipoprotein PF547_10000 PF03180 NLPA lipoprotein PF547_10005 PF00296 Luciferase-like monooxygenase PF547_10030 PF00528 Binding-protein-dependent transport system inner membrane component PF547_10035 PF00528 Binding-protein-dependent transport system inner membrane component PF547_10040 PF00005 ABC transporter PF547_10050 PF01037 Lrp/AsnC ligand binding domain PF547_10055 PF01709 Transcriptional regulator PF547_10065 PF00440 Bacterial regulatory proteins, tetR family PF547_10085 PF03466 LysR substrate binding domain PF547_10085 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family PF547_10095 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin PF547_10105 PF00892 EamA-like transporter family PF547_10125 PF13953 PapC C-terminal domain PF547_10125 PF13954 PapC N-terminal domain PF547_10125 PF00577 Outer membrane usher protein PF547_10130 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain PF547_10130 PF02753 Pili assembly chaperone PapD, C-terminal domain PF547_10135 PF16970 Type-1 fimbrial protein, A PF547_10150 PF04055 Radical SAM superfamily PF547_10150 PF06968 Biotin and Thiamin Synthesis associated domain PF547_10155 PF08331 Domain of unknown function (DUF1730) PF547_10160 PF01256 Carbohydrate kinase PF547_10160 PF03853 YjeF-related protein N-terminus PF547_10165 PF02075 Crossover junction endodeoxyribonuclease RuvC PF547_10180 PF00905 Penicillin binding protein transpeptidase domain PF547_10200 PF02773 S-adenosylmethionine synthetase, C-terminal domain PF547_10200 PF02772 S-adenosylmethionine synthetase, central domain PF547_10200 PF00438 S-adenosylmethionine synthetase, N-terminal domain PF547_10205 PF00456 Transketolase, thiamine diphosphate binding domain PF547_10205 PF02780 Transketolase, C-terminal domain PF547_10205 PF02779 Transketolase, pyrimidine binding domain PF547_10215 PF04264 YceI-like domain PF547_10225 PF09992 Phosphodiester glycosidase PF547_10235 PF05958 tRNA (Uracil-5-)-methyltransferase PF547_10240 PF04229 GrpB protein PF547_10245 PF00171 Aldehyde dehydrogenase family PF547_10245 PF14850 DNA-binding domain of Proline dehydrogenase PF547_10245 PF01619 Proline dehydrogenase PF547_10245 PF18327 Proline utilization A proline dehydrogenase N-terminal domain PF547_10250 PF01037 Lrp/AsnC ligand binding domain PF547_10255 PF00474 Sodium:solute symporter family PF547_10260 PF02146 Sir2 family PF547_10265 PF01597 Glycine cleavage H-protein PF547_10270 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term PF547_10270 PF12833 Helix-turn-helix domain PF547_10280 PF00664 ABC transporter transmembrane region PF547_10280 PF00005 ABC transporter PF547_10285 PF09831 Uncharacterized protein conserved in bacteria (DUF2058) PF547_10290 PF06912 Protein of unknown function (DUF1275) PF547_10295 PF00375 Sodium:dicarboxylate symporter family PF547_10315 PF08007 Cupin superfamily protein PF547_10320 PF02545 Maf-like protein PF547_10330 PF00162 Phosphoglycerate kinase PF547_10340 PF01116 Fructose-bisphosphate aldolase class-II PF547_10345 PF00639 PPIC-type PPIASE domain PF547_10345 PF09312 SurA N-terminal domain PF547_10350 PF04453 LPS transport system D PF547_10350 PF03968 OstA-like protein PF547_10355 PF01636 Phosphotransferase enzyme family PF547_10360 PF00483 Nucleotidyl transferase PF547_10365 PF02527 rRNA small subunit methyltransferase G PF547_10370 PF13614 AAA domain PF547_10375 PF17762 HTH domain found in ParB protein PF547_10375 PF02195 ParB-like nuclease domain PF547_10380 PF01618 MotA/TolQ/ExbB proton channel family PF547_10390 PF00005 ABC transporter PF547_10390 PF00664 ABC transporter transmembrane region PF547_10395 PF02606 Tetraacyldisaccharide-1-P 4'-kinase PF547_10400 PF02348 Cytidylyltransferase PF547_10405 PF09115 DNA polymerase III, delta subunit, C terminal PF547_10415 PF01026 TatD related DNase PF547_10430 PF02501 Type II secretion system (T2SS), protein I PF547_10430 PF07963 Prokaryotic N-terminal methylation motif PF547_10435 PF07963 Prokaryotic N-terminal methylation motif PF547_10435 PF11612 Type II secretion system (T2SS), protein J PF547_10440 PF03934 Type II secretion system (T2SS), protein K PF547_10450 PF03167 Uracil DNA glycosylase superfamily PF547_10460 PF14437 MafB19-like deaminase PF547_10470 PF02224 Cytidylate kinase PF547_10475 PF00575 S1 RNA binding domain PF547_10480 PF00216 Bacterial DNA-binding protein PF547_10490 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family PF547_10500 PF00743 Flavin-binding monooxygenase-like PF547_10510 PF03969 AFG1-like ATPase PF547_10515 PF01274 Malate synthase PF547_10525 PF02472 Biopolymer transport protein ExbD/TolR PF547_10530 PF02472 Biopolymer transport protein ExbD/TolR PF547_10535 PF01618 MotA/TolQ/ExbB proton channel family PF547_10545 PF00593 TonB dependent receptor PF547_10545 PF07715 TonB-dependent Receptor Plug Domain PF547_10565 PF01432 Peptidase family M3 PF547_10570 PF00528 Binding-protein-dependent transport system inner membrane component PF547_10575 PF00528 Binding-protein-dependent transport system inner membrane component PF547_10580 PF00005 ABC transporter PF547_10580 PF08352 Oligopeptide/dipeptide transporter, C-terminal region PF547_10595 PF00459 Inositol monophosphatase family PF547_10605 PF01649 Ribosomal protein S20 PF547_10610 PF13460 NAD(P)H-binding PF547_10615 PF03737 Aldolase/RraA PF547_10635 PF02559 CarD-like/TRCF domain PF547_10635 PF00270 DEAD/DEAH box helicase PF547_10635 PF00271 Helicase conserved C-terminal domain PF547_10635 PF03461 TRCF domain PF547_10635 PF17757 UvrB interaction domain PF547_10645 PF00211 Adenylate and Guanylate cyclase catalytic domain PF547_10650 PF00111 2Fe-2S iron-sulfur cluster binding domain PF547_10655 PF00012 Hsp70 protein PF547_10660 PF00226 DnaJ domain PF547_10660 PF07743 HSCB C-terminal oligomerisation domain PF547_10665 PF01521 Iron-sulphur cluster biosynthesis PF547_10670 PF01592 NifU-like N terminal domain PF547_10675 PF00266 Aminotransferase class-V PF547_10680 PF02082 Transcriptional regulator PF547_10695 PF00216 Bacterial DNA-binding protein PF547_10700 PF00639 PPIC-type PPIASE domain PF547_10700 PF09312 SurA N-terminal domain PF547_10705 PF12833 Helix-turn-helix domain PF547_10705 PF12852 Cupin PF547_10710 PF00487 Fatty acid desaturase PF547_10715 PF02770 Acyl-CoA dehydrogenase, middle domain PF547_10715 PF00441 Acyl-CoA dehydrogenase, C-terminal domain PF547_10715 PF02771 Acyl-CoA dehydrogenase, N-terminal domain PF547_10720 PF02770 Acyl-CoA dehydrogenase, middle domain PF547_10720 PF02771 Acyl-CoA dehydrogenase, N-terminal domain PF547_10720 PF00441 Acyl-CoA dehydrogenase, C-terminal domain PF547_10725 PF03109 ABC1 family PF547_10735 PF04073 Aminoacyl-tRNA editing domain PF547_10740 PF04183 IucA / IucC family PF547_10740 PF06276 Ferric iron reductase FhuF-like transporter PF547_10745 PF13434 L-lysine 6-monooxygenase (NADPH-requiring) PF547_10750 PF07690 Major Facilitator Superfamily PF547_10755 PF06276 Ferric iron reductase FhuF-like transporter PF547_10755 PF04183 IucA / IucC family PF547_10760 PF06276 Ferric iron reductase FhuF-like transporter PF547_10760 PF04183 IucA / IucC family PF547_10775 PF07715 TonB-dependent Receptor Plug Domain PF547_10775 PF00593 TonB dependent receptor PF547_10800 PF13419 Haloacid dehalogenase-like hydrolase PF547_10815 PF02277 Phosphoribosyltransferase PF547_10830 PF02654 Cobalamin-5-phosphate synthase PF547_10835 PF00793 DAHP synthetase I family PF547_10840 PF01925 Sulfite exporter TauE/SafE PF547_10865 PF02684 Lipid-A-disaccharide synthetase PF547_10875 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion PF547_10880 PF00005 ABC transporter PF547_10915 PF01230 HIT domain PF547_10945 PF08241 Methyltransferase domain PF547_10950 PF00561 alpha/beta hydrolase fold PF547_10955 PF01053 Cys/Met metabolism PLP-dependent enzyme PF547_10965 PF02575 YbaB/EbfC DNA-binding family PF547_10970 PF13662 Toprim domain PF547_10970 PF02132 RecR protein PF547_10975 PF00570 HRDC domain PF547_10975 PF01612 3'-5' exonuclease PF547_10995 PF05166 YcgL domain PF547_11005 PF00004 ATPase family associated with various cellular activities (AAA) PF547_11005 PF17862 AAA+ lid domain PF547_11005 PF01434 Peptidase family M41 PF547_11015 PF00291 Pyridoxal-phosphate dependent enzyme PF547_11020 PF05175 Methyltransferase small domain PF547_11025 PF01264 Chorismate synthase PF547_11030 PF08448 PAS fold PF547_11030 PF00990 Diguanylate cyclase, GGDEF domain PF547_11045 PF04055 Radical SAM superfamily PF547_11050 PF00676 Dehydrogenase E1 component PF547_11055 PF02780 Transketolase, C-terminal domain PF547_11055 PF02779 Transketolase, pyrimidine binding domain PF547_11060 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) PF547_11060 PF00364 Biotin-requiring enzyme PF547_11060 PF02817 e3 binding domain PF547_11065 PF07992 Pyridine nucleotide-disulphide oxidoreductase PF547_11065 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain PF547_11070 PF00106 short chain dehydrogenase PF547_11075 PF08240 Alcohol dehydrogenase GroES-like domain PF547_11075 PF00107 Zinc-binding dehydrogenase PF547_11080 PF01062 Bestrophin, RFP-TM, chloride channel PF547_11085 PF02954 Bacterial regulatory protein, Fis family PF547_11085 PF00072 Response regulator receiver domain PF547_11085 PF00158 Sigma-54 interaction domain PF547_11090 PF04273 Putative phosphatase (DUF442) PF547_11090 PF00753 Metallo-beta-lactamase superfamily PF547_11110 PF01925 Sulfite exporter TauE/SafE PF547_11125 PF06445 GyrI-like small molecule binding domain PF547_11125 PF12833 Helix-turn-helix domain PF547_11130 PF01638 HxlR-like helix-turn-helix PF547_11135 PF02525 Flavodoxin-like fold PF547_11145 PF00392 Bacterial regulatory proteins, gntR family PF547_11145 PF07702 UTRA domain PF547_11160 PF04069 Substrate binding domain of ABC-type glycine betaine transport system PF547_11165 PF00528 Binding-protein-dependent transport system inner membrane component PF547_11170 PF00005 ABC transporter PF547_11185 PF00083 Sugar (and other) transporter PF547_11190 PF07715 TonB-dependent Receptor Plug Domain PF547_11190 PF00593 TonB dependent receptor PF547_11195 PF10415 Fumarase C C-terminus PF547_11195 PF00206 Lyase PF547_11210 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family PF547_11210 PF03466 LysR substrate binding domain PF547_11215 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family PF547_11215 PF03466 LysR substrate binding domain PF547_11220 PF00108 Thiolase, N-terminal domain PF547_11220 PF02803 Thiolase, C-terminal domain PF547_11225 PF02667 Short chain fatty acid transporter PF547_11230 PF01144 Coenzyme A transferase PF547_11235 PF01144 Coenzyme A transferase PF547_11240 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family PF547_11240 PF03466 LysR substrate binding domain PF547_11265 PF12833 Helix-turn-helix domain PF547_11265 PF06719 AraC-type transcriptional regulator N-terminus PF547_11275 PF01738 Dienelactone hydrolase family PF547_11290 PF14525 AraC-binding-like domain PF547_11290 PF12833 Helix-turn-helix domain PF547_11295 PF00111 2Fe-2S iron-sulfur cluster binding domain PF547_11295 PF00970 Oxidoreductase FAD-binding domain PF547_11295 PF00175 Oxidoreductase NAD-binding domain PF547_11300 PF00866 Ring hydroxylating beta subunit PF547_11305 PF00848 Ring hydroxylating alpha subunit (catalytic domain) PF547_11305 PF00355 Rieske [2Fe-2S] domain PF547_11310 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family PF547_11310 PF03459 TOBE domain PF547_11320 PF00528 Binding-protein-dependent transport system inner membrane component PF547_11325 PF00005 ABC transporter PF547_11325 PF03459 TOBE domain PF547_11330 PF00106 short chain dehydrogenase PF547_11345 PF00149 Calcineurin-like phosphoesterase PF547_11350 PF13089 Polyphosphate kinase N-terminal domain PF547_11350 PF17941 Polyphosphate kinase C-terminal domain 1 PF547_11350 PF13090 Polyphosphate kinase C-terminal domain 2 PF547_11350 PF02503 Polyphosphate kinase middle domain PF547_11355 PF08042 PqqA family PF547_11360 PF12706 Beta-lactamase superfamily domain PF547_11365 PF03070 TENA/THI-4/PQQC family PF547_11370 PF05402 Coenzyme PQQ synthesis protein D (PqqD) PF547_11375 PF13186 Iron-sulfur cluster-binding domain PF547_11375 PF04055 Radical SAM superfamily PF547_11380 PF01244 Membrane dipeptidase (Peptidase family M19) PF547_11400 PF13091 PLD-like domain PF547_11415 PF00199 Catalase PF547_11425 PF00107 Zinc-binding dehydrogenase PF547_11425 PF08240 Alcohol dehydrogenase GroES-like domain PF547_11435 PF00419 Fimbrial protein PF547_11440 PF13953 PapC C-terminal domain PF547_11440 PF13954 PapC N-terminal domain PF547_11440 PF00577 Outer membrane usher protein PF547_11445 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain PF547_11445 PF02753 Pili assembly chaperone PapD, C-terminal domain PF547_11455 PF16970 Type-1 fimbrial protein, A PF547_11475 PF01266 FAD dependent oxidoreductase PF547_11490 PF01593 Flavin containing amine oxidoreductase PF547_11495 PF00743 Flavin-binding monooxygenase-like PF547_11500 PF12146 Serine aminopeptidase, S33 PF547_11505 PF02321 Outer membrane efflux protein PF547_11510 PF00873 AcrB/AcrD/AcrF family PF547_11515 PF00529 HlyD membrane-fusion protein of T1SS PF547_11515 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion PF547_11520 PF00486 Transcriptional regulatory protein, C terminal PF547_11520 PF00072 Response regulator receiver domain PF547_11525 PF00512 His Kinase A (phospho-acceptor) domain PF547_11525 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PF547_11525 PF00672 HAMP domain PF547_11525 PF16527 Two-component sensor protein CpxA, periplasmic domain PF547_11535 PF02311 AraC-like ligand binding domain PF547_11535 PF12833 Helix-turn-helix domain PF547_11540 PF12146 Serine aminopeptidase, S33 PF547_11590 PF02824 TGS domain PF547_11590 PF13291 ACT domain PF547_11590 PF04607 Region found in RelA / SpoT proteins PF547_11600 PF01975 Survival protein SurE PF547_11625 PF07690 Major Facilitator Superfamily PF547_11630 PF13533 Biotin-lipoyl like PF547_11635 PF01425 Amidase PF547_11640 PF00196 Bacterial regulatory proteins, luxR family PF547_11725 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase PF547_11725 PF14572 Phosphoribosyl synthetase-associated domain PF547_11745 PF00005 ABC transporter PF547_11750 PF01032 FecCD transport family PF547_11760 PF08240 Alcohol dehydrogenase GroES-like domain PF547_11760 PF00107 Zinc-binding dehydrogenase PF547_11775 PF12833 Helix-turn-helix domain PF547_11775 PF06719 AraC-type transcriptional regulator N-terminus PF547_11780 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase PF547_11780 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase PF547_11785 PF07690 Major Facilitator Superfamily PF547_11790 PF01370 NAD dependent epimerase/dehydratase family PF547_11795 PF03466 LysR substrate binding domain PF547_11795 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family PF547_11805 PF00920 Dehydratase family PF547_11810 PF00171 Aldehyde dehydrogenase family PF547_11825 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion PF547_11825 PF00529 HlyD membrane-fusion protein of T1SS PF547_11860 PF03737 Aldolase/RraA PF547_11865 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain PF547_11865 PF01842 ACT domain PF547_11865 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain PF547_11870 PF07690 Major Facilitator Superfamily PF547_11890 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family PF547_11890 PF03466 LysR substrate binding domain PF547_11900 PF08450 SMP-30/Gluconolactonase/LRE-like region PF547_11905 PF07702 UTRA domain PF547_11905 PF00392 Bacterial regulatory proteins, gntR family PF547_11915 PF04909 Amidohydrolase PF547_11920 PF07690 Major Facilitator Superfamily PF547_11935 PF05860 haemagglutination activity domain PF547_11935 PF13332 Hemagglutinin repeat PF547_11935 PF13018 Extended Signal Peptide of Type V secretion system PF547_11935 PF04829 Pre-toxin domain with VENN motif PF547_11940 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB PF547_11940 PF17287 POTRA domain PF547_11940 PF08479 POTRA domain, ShlB-type PF547_11950 PF01546 Peptidase family M20/M25/M40 PF547_11950 PF07687 Peptidase dimerisation domain PF547_11960 PF00999 Sodium/hydrogen exchanger family PF547_11960 PF02254 TrkA-N domain PF547_11965 PF07995 Glucose / Sorbosone dehydrogenase PF547_11970 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family PF547_11970 PF03466 LysR substrate binding domain PF547_11975 PF00857 Isochorismatase family PF547_11985 PF00440 Bacterial regulatory proteins, tetR family PF547_11985 PF08359 YsiA-like protein, C-terminal region PF547_11990 PF12706 Beta-lactamase superfamily domain PF547_12000 PF07992 Pyridine nucleotide-disulphide oxidoreductase PF547_12010 PF00376 MerR family regulatory protein PF547_12010 PF09278 MerR, DNA binding PF547_12015 PF01872 RibD C-terminal domain PF547_12020 PF00106 short chain dehydrogenase PF547_12025 PF00724 NADH:flavin oxidoreductase / NADH oxidase family PF547_12025 PF07992 Pyridine nucleotide-disulphide oxidoreductase PF547_12030 PF01047 MarR family PF547_12035 PF07859 alpha/beta hydrolase fold PF547_12050 PF00199 Catalase PF547_12050 PF06628 Catalase-related immune-responsive PF547_12055 PF00561 alpha/beta hydrolase fold PF547_12065 PF00171 Aldehyde dehydrogenase family PF547_12070 PF08240 Alcohol dehydrogenase GroES-like domain PF547_12070 PF00107 Zinc-binding dehydrogenase PF547_12075 PF00474 Sodium:solute symporter family PF547_12080 PF04341 Protein of unknown function, DUF485 PF547_12085 PF00501 AMP-binding enzyme PF547_12085 PF13193 AMP-binding enzyme C-terminal domain PF547_12090 PF00158 Sigma-54 interaction domain PF547_12090 PF06506 Propionate catabolism activator PF547_12090 PF02954 Bacterial regulatory protein, Fis family PF547_12100 PF00441 Acyl-CoA dehydrogenase, C-terminal domain PF547_12100 PF02770 Acyl-CoA dehydrogenase, middle domain PF547_12100 PF02771 Acyl-CoA dehydrogenase, N-terminal domain PF547_12120 PF00171 Aldehyde dehydrogenase family PF547_12130 PF07690 Major Facilitator Superfamily PF547_12135 PF00920 Dehydratase family PF547_12140 PF07729 FCD domain PF547_12140 PF00392 Bacterial regulatory proteins, gntR family PF547_12150 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family PF547_12150 PF03466 LysR substrate binding domain PF547_12155 PF13378 Enolase C-terminal domain-like PF547_12155 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain PF547_12160 PF02426 Muconolactone delta-isomerase PF547_12165 PF04444 Catechol dioxygenase N terminus PF547_12165 PF00775 Dioxygenase PF547_12170 PF01144 Coenzyme A transferase PF547_12175 PF01144 Coenzyme A transferase PF547_12180 PF02803 Thiolase, C-terminal domain PF547_12180 PF00108 Thiolase, N-terminal domain PF547_12185 PF12146 Serine aminopeptidase, S33 PF547_12190 PF01804 Penicillin amidase PF547_12195 PF00171 Aldehyde dehydrogenase family PF547_12205 PF01179 Copper amine oxidase, enzyme domain PF547_12205 PF07833 Copper amine oxidase N-terminal domain PF547_12205 PF02727 Copper amine oxidase, N2 domain PF547_12205 PF02728 Copper amine oxidase, N3 domain PF547_12210 PF02311 AraC-like ligand binding domain PF547_12210 PF12833 Helix-turn-helix domain PF547_12215 PF01613 Flavin reductase like domain PF547_12220 PF00111 2Fe-2S iron-sulfur cluster binding domain PF547_12220 PF00175 Oxidoreductase NAD-binding domain PF547_12235 PF00848 Ring hydroxylating alpha subunit (catalytic domain) PF547_12235 PF00355 Rieske [2Fe-2S] domain PF547_12250 PF08028 Acyl-CoA dehydrogenase, C-terminal domain PF547_12255 PF01425 Amidase PF547_12265 PF07690 Major Facilitator Superfamily PF547_12275 PF00106 short chain dehydrogenase PF547_12290 PF02771 Acyl-CoA dehydrogenase, N-terminal domain PF547_12290 PF02770 Acyl-CoA dehydrogenase, middle domain PF547_12290 PF00441 Acyl-CoA dehydrogenase, C-terminal domain PF547_12295 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family PF547_12295 PF03466 LysR substrate binding domain PF547_12300 PF09339 IclR helix-turn-helix domain PF547_12300 PF01614 Bacterial transcriptional regulator PF547_12305 PF00753 Metallo-beta-lactamase superfamily PF547_12315 PF04143 Sulphur transport PF547_12325 PF01011 PQQ enzyme repeat PF547_12325 PF13360 PQQ-like domain PF547_12330 PF04966 Carbohydrate-selective porin, OprB family PF547_12335 PF05048 Periplasmic copper-binding protein (NosD) PF547_12340 PF01487 Type I 3-dehydroquinase PF547_12345 PF00775 Dioxygenase PF547_12350 PF00775 Dioxygenase PF547_12350 PF12391 Protocatechuate 3,4-dioxygenase beta subunit N terminal PF547_12355 PF02627 Carboxymuconolactone decarboxylase family PF547_12360 PF07690 Major Facilitator Superfamily PF547_12365 PF00561 alpha/beta hydrolase fold PF547_12370 PF10397 Adenylosuccinate lyase C-terminus PF547_12370 PF00206 Lyase PF547_12375 PF02803 Thiolase, C-terminal domain PF547_12375 PF00108 Thiolase, N-terminal domain PF547_12380 PF01144 Coenzyme A transferase PF547_12385 PF01144 Coenzyme A transferase PF547_12390 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase PF547_12395 PF04977 Septum formation initiator PF547_12400 PF04239 Protein of unknown function (DUF421) PF547_12405 PF03952 Enolase, N-terminal domain PF547_12405 PF00113 Enolase, C-terminal TIM barrel domain PF547_12410 PF00793 DAHP synthetase I family PF547_12415 PF06418 CTP synthase N-terminus PF547_12415 PF00117 Glutamine amidotransferase class-I PF547_12445 PF00724 NADH:flavin oxidoreductase / NADH oxidase family PF547_12445 PF07992 Pyridine nucleotide-disulphide oxidoreductase PF547_12460 PF00793 DAHP synthetase I family PF547_12465 PF02694 Uncharacterised BCR, YnfA/UPF0060 family PF547_12470 PF00004 ATPase family associated with various cellular activities (AAA) PF547_12470 PF07724 AAA domain (Cdc48 subfamily) PF547_12470 PF17871 AAA lid domain PF547_12470 PF02861 Clp amino terminal domain, pathogenicity island component PF547_12470 PF10431 C-terminal, D2-small domain, of ClpB protein PF547_12475 PF02617 ATP-dependent Clp protease adaptor protein ClpS PF547_12485 PF01118 Semialdehyde dehydrogenase, NAD binding domain PF547_12485 PF02774 Semialdehyde dehydrogenase, dimerisation domain PF547_12500 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) PF547_12505 PF00585 C-terminal regulatory domain of Threonine dehydratase PF547_12505 PF00291 Pyridoxal-phosphate dependent enzyme PF547_12510 PF02080 TrkA-C domain PF547_12510 PF02254 TrkA-N domain PF547_12515 PF02386 Cation transport protein PF547_12520 PF02253 Phospholipase A1 PF547_12525 PF08367 Peptidase M16C associated PF547_12525 PF00675 Insulinase (Peptidase family M16) PF547_12525 PF05193 Peptidase M16 inactive domain PF547_12530 PF07715 TonB-dependent Receptor Plug Domain PF547_12530 PF00593 TonB dependent receptor PF547_12535 PF00294 pfkB family carbohydrate kinase PF547_12545 PF07290 Protein of unknown function (DUF1449) PF547_12555 PF01654 Cytochrome bd terminal oxidase subunit I PF547_12560 PF02322 Cytochrome bd terminal oxidase subunit II PF547_12565 PF08173 Membrane bound YbgT-like protein PF547_12580 PF09829 Uncharacterized protein conserved in bacteria (DUF2057) PF547_12590 PF02881 SRP54-type protein, helical bundle domain PF547_12590 PF00448 SRP54-type protein, GTPase domain PF547_12615 PF00478 IMP dehydrogenase / GMP reductase domain PF547_12615 PF00571 CBS domain PF547_12620 PF00202 Aminotransferase class-III PF547_12625 PF00462 Glutaredoxin PF547_12635 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family PF547_12635 PF03466 LysR substrate binding domain PF547_12640 PF00557 Metallopeptidase family M24 PF547_12645 PF05525 Branched-chain amino acid transport protein PF547_12670 PF02896 PEP-utilising enzyme, TIM barrel domain PF547_12670 PF00391 PEP-utilising enzyme, mobile domain PF547_12670 PF05524 PEP-utilising enzyme, N-terminal PF547_12670 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 PF547_12670 PF00381 PTS HPr component phosphorylation site PF547_12675 PF00294 pfkB family carbohydrate kinase PF547_12680 PF02378 Phosphotransferase system, EIIC PF547_12680 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit PF547_12700 PF03707 Bacterial signalling protein N terminal repeat PF547_12700 PF00990 Diguanylate cyclase, GGDEF domain PF547_12700 PF00563 EAL domain PF547_12710 PF07995 Glucose / Sorbosone dehydrogenase PF547_12715 PF02586 SOS response associated peptidase (SRAP) PF547_12720 PF01740 STAS domain PF547_12720 PF00916 Sulfate permease family PF547_12725 PF05922 Peptidase inhibitor I9 PF547_12725 PF00082 Subtilase family PF547_12740 PF00324 Amino acid permease PF547_12745 PF00266 Aminotransferase class-V PF547_12750 PF01037 Lrp/AsnC ligand binding domain PF547_12775 PF13419 Haloacid dehalogenase-like hydrolase PF547_12780 PF01479 S4 domain PF547_12785 PF00154 recA bacterial DNA recombination protein PF547_12790 PF02631 RecX family PF547_12805 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 PF547_12805 PF00132 Bacterial transferase hexapeptide (six repeats) PF547_12810 PF07977 FabA-like domain PF547_12815 PF00132 Bacterial transferase hexapeptide (six repeats) PF547_12815 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD PF547_12825 PF01103 Surface antigen PF547_12825 PF07244 Surface antigen variable number repeat PF547_12830 PF02163 Peptidase family M50 PF547_12830 PF17820 PDZ domain PF547_12830 PF13180 PDZ domain PF547_12835 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain PF547_12835 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase PF547_12835 PF13288 DXP reductoisomerase C-terminal domain PF547_12845 PF01255 Putative undecaprenyl diphosphate synthase PF547_12850 PF01765 Ribosome recycling factor PF547_12855 PF00696 Amino acid kinase family PF547_12860 PF04055 Radical SAM superfamily PF547_12860 PF00919 Uncharacterized protein family UPF0004 PF547_12860 PF18693 TRAM domain PF547_12865 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PF547_12865 PF00989 PAS fold PF547_12865 PF00512 His Kinase A (phospho-acceptor) domain PF547_12870 PF00072 Response regulator receiver domain PF547_12870 PF00158 Sigma-54 interaction domain PF547_12870 PF02954 Bacterial regulatory protein, Fis family PF547_12875 PF00440 Bacterial regulatory proteins, tetR family PF547_12880 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain PF547_12880 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain PF547_12890 PF02542 YgbB family PF547_12900 PF01266 FAD dependent oxidoreductase PF547_12920 PF10415 Fumarase C C-terminus PF547_12920 PF00206 Lyase PF547_12925 PF16363 GDP-mannose 4,6 dehydratase PF547_12930 PF02635 DsrE/DsrF-like family PF547_12950 PF00892 EamA-like transporter family PF547_12955 PF00155 Aminotransferase class I and II PF547_12955 PF00392 Bacterial regulatory proteins, gntR family PF547_12960 PF01638 HxlR-like helix-turn-helix PF547_12965 PF00994 Probable molybdopterin binding domain PF547_12965 PF03454 MoeA C-terminal region (domain IV) PF547_12965 PF03453 MoeA N-terminal region (domain I and II) PF547_12970 PF00994 Probable molybdopterin binding domain PF547_12970 PF01967 MoaC family PF547_12975 PF02391 MoaE protein PF547_12985 PF06463 Molybdenum Cofactor Synthesis C PF547_12985 PF04055 Radical SAM superfamily PF547_12990 PF04879 Molybdopterin oxidoreductase Fe4S4 domain PF547_12990 PF00384 Molybdopterin oxidoreductase PF547_12990 PF01568 Molydopterin dinucleotide binding domain PF547_12995 PF12804 MobA-like NTP transferase domain PF547_13000 PF01568 Molydopterin dinucleotide binding domain PF547_13000 PF00384 Molybdopterin oxidoreductase PF547_13000 PF04324 BFD-like [2Fe-2S] binding domain PF547_13000 PF04879 Molybdopterin oxidoreductase Fe4S4 domain PF547_13005 PF18267 Rubredoxin NAD+ reductase C-terminal domain PF547_13005 PF07992 Pyridine nucleotide-disulphide oxidoreductase PF547_13005 PF04324 BFD-like [2Fe-2S] binding domain PF547_13005 PF01077 Nitrite and sulphite reductase 4Fe-4S domain PF547_13005 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain PF547_13010 PF04324 BFD-like [2Fe-2S] binding domain PF547_13010 PF01077 Nitrite and sulphite reductase 4Fe-4S domain PF547_13010 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain PF547_13010 PF07992 Pyridine nucleotide-disulphide oxidoreductase PF547_13010 PF13806 Rieske-like [2Fe-2S] domain PF547_13010 PF18267 Rubredoxin NAD+ reductase C-terminal domain PF547_13020 PF00072 Response regulator receiver domain PF547_13020 PF00486 Transcriptional regulatory protein, C terminal PF547_13025 PF00005 ABC transporter PF547_13035 PF11799 impB/mucB/samB family C-terminal domain PF547_13035 PF13438 Domain of unknown function (DUF4113) PF547_13035 PF00817 impB/mucB/samB family PF547_13040 PF01220 Dehydroquinase class II PF547_13045 PF00364 Biotin-requiring enzyme PF547_13050 PF02785 Biotin carboxylase C-terminal domain PF547_13050 PF00289 Biotin carboxylase, N-terminal domain PF547_13050 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain PF547_13060 PF12832 MFS_1 like family PF547_13125 PF01551 Peptidase family M23 PF547_13125 PF01476 LysM domain PF547_13125 PF08525 Opacity-associated protein A N-terminal motif PF547_13455 PF01812 5-formyltetrahydrofolate cyclo-ligase family PF547_13460 PF04355 SmpA / OmlA family PF547_13460 PF00691 OmpA family PF547_13465 PF13018 Extended Signal Peptide of Type V secretion system PF547_13465 PF03895 YadA-like membrane anchor domain PF547_13465 PF05658 Head domain of trimeric autotransporter adhesin PF547_13465 PF05662 Coiled stalk of trimeric autotransporter adhesin PF547_13470 PF02190 ATP-dependent protease La (LON) substrate-binding domain PF547_13470 PF05362 Lon protease (S16) C-terminal proteolytic domain PF547_13470 PF00004 ATPase family associated with various cellular activities (AAA) PF547_13475 PF02590 Predicted SPOUT methyltransferase PF547_13480 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase PF547_13490 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase PF547_13490 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain PF547_13495 PF04060 Putative Fe-S cluster PF547_13500 PF10576 Iron-sulfur binding domain of endonuclease III PF547_13500 PF00633 Helix-hairpin-helix motif PF547_13500 PF00730 HhH-GPD superfamily base excision DNA repair protein PF547_13510 PF05191 Adenylate kinase, active site lid PF547_13525 PF03717 Penicillin-binding Protein dimerisation domain PF547_13525 PF00905 Penicillin binding protein transpeptidase domain PF547_13540 PF02492 CobW/HypB/UreG, nucleotide-binding domain PF547_13545 PF01730 UreF PF547_13550 PF05194 UreE urease accessory protein, C-terminal domain PF547_13550 PF02814 UreE urease accessory protein, N-terminal domain PF547_13560 PF00699 Urease beta subunit PF547_13565 PF00547 Urease, gamma subunit PF547_13570 PF01774 UreD urease accessory protein PF547_13585 PF00463 Isocitrate lyase family PF547_13590 PF03466 LysR substrate binding domain PF547_13590 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family PF547_13595 PF01595 Cyclin M transmembrane N-terminal domain PF547_13595 PF03471 Transporter associated domain PF547_13595 PF00571 CBS domain PF547_13600 PF03600 Citrate transporter PF547_13615 PF00009 Elongation factor Tu GTP binding domain PF547_13620 PF01507 Phosphoadenosine phosphosulfate reductase family PF547_13635 PF14052 Capsule assembly protein Wzi PF547_13640 PF00152 tRNA synthetases class II (D, K and N) PF547_13640 PF01336 OB-fold nucleic acid binding domain PF547_13655 PF00301 Rubredoxin PF547_13660 PF07992 Pyridine nucleotide-disulphide oxidoreductase PF547_13660 PF18113 Rubredoxin binding C-terminal domain PF547_13665 PF00561 alpha/beta hydrolase fold PF547_13670 PF03466 LysR substrate binding domain PF547_13670 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family PF547_13680 PF13089 Polyphosphate kinase N-terminal domain PF547_13680 PF17941 Polyphosphate kinase C-terminal domain 1 PF547_13680 PF13090 Polyphosphate kinase C-terminal domain 2 PF547_13680 PF02503 Polyphosphate kinase middle domain PF547_13685 PF00912 Transglycosylase PF547_13690 PF01694 Rhomboid family PF547_13700 PF00005 ABC transporter PF547_13705 PF13472 GDSL-like Lipase/Acylhydrolase family PF547_13710 PF00484 Carbonic anhydrase PF547_13715 PF00561 alpha/beta hydrolase fold PF547_13725 PF00593 TonB dependent receptor PF547_13725 PF07715 TonB-dependent Receptor Plug Domain PF547_13730 PF01521 Iron-sulphur cluster biosynthesis PF547_13730 PF01106 NifU-like domain PF547_13740 PF00884 Sulfatase PF547_13745 PF03781 Sulfatase-modifying factor enzyme 1 PF547_13760 PF00291 Pyridoxal-phosphate dependent enzyme PF547_13765 PF01384 Phosphate transporter family PF547_13770 PF02310 B12 binding domain PF547_13770 PF02607 B12 binding domain PF547_13770 PF02965 Vitamin B12 dependent methionine synthase, activation domain PF547_13770 PF00809 Pterin binding enzyme PF547_13770 PF02574 Homocysteine S-methyltransferase PF547_13775 PF02779 Transketolase, pyrimidine binding domain PF547_13775 PF02780 Transketolase, C-terminal domain PF547_13780 PF00456 Transketolase, thiamine diphosphate binding domain PF547_13785 PF07690 Major Facilitator Superfamily PF547_13795 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family PF547_13795 PF03466 LysR substrate binding domain PF547_13805 PF01263 Aldose 1-epimerase PF547_13810 PF07690 Major Facilitator Superfamily PF547_13815 PF12833 Helix-turn-helix domain PF547_13815 PF02311 AraC-like ligand binding domain PF547_13820 PF04960 Glutaminase PF547_13825 PF01327 Polypeptide deformylase PF547_13830 PF07690 Major Facilitator Superfamily PF547_13840 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain PF547_13840 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain PF547_13840 PF00205 Thiamine pyrophosphate enzyme, central domain PF547_13845 PF00171 Aldehyde dehydrogenase family PF547_13850 PF01958 Domain of unknown function DUF108 PF547_13850 PF03447 Homoserine dehydrogenase, NAD binding domain PF547_13860 PF12697 Alpha/beta hydrolase family PF547_13870 PF07690 Major Facilitator Superfamily PF547_13875 PF14759 Reductase C-terminal PF547_13875 PF07992 Pyridine nucleotide-disulphide oxidoreductase PF547_13880 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily PF547_13890 PF00355 Rieske [2Fe-2S] domain PF547_13900 PF00355 Rieske [2Fe-2S] domain PF547_13905 PF09339 IclR helix-turn-helix domain PF547_13905 PF01614 Bacterial transcriptional regulator PF547_13920 PF00378 Enoyl-CoA hydratase/isomerase PF547_13930 PF00535 Glycosyl transferase family 2 PF547_13935 PF01522 Polysaccharide deacetylase PF547_13935 PF14883 Hypothetical glycosyl hydrolase family 13 PF547_13940 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase PF547_13945 PF07152 YaeQ protein PF547_13950 PF00375 Sodium:dicarboxylate symporter family PF547_13955 PF07683 Cobalamin synthesis protein cobW C-terminal domain PF547_13955 PF02492 CobW/HypB/UreG, nucleotide-binding domain PF547_13965 PF03061 Thioesterase superfamily PF547_13975 PF02028 BCCT, betaine/carnitine/choline family transporter PF547_13980 PF02028 BCCT, betaine/carnitine/choline family transporter PF547_13985 PF00440 Bacterial regulatory proteins, tetR family PF547_13985 PF13977 BetI-type transcriptional repressor, C-terminal PF547_13990 PF00171 Aldehyde dehydrogenase family PF547_13995 PF05199 GMC oxidoreductase PF547_13995 PF00732 GMC oxidoreductase PF547_14000 PF06039 Malate:quinone oxidoreductase (Mqo) PF547_14010 PF02574 Homocysteine S-methyltransferase PF547_14015 PF13520 Amino acid permease PF547_14040 PF01126 Heme oxygenase PF547_14050 PF04575 Protein of unknown function (DUF560) PF547_14060 PF07715 TonB-dependent Receptor Plug Domain PF547_14060 PF00593 TonB dependent receptor PF547_14070 PF04542 Sigma-70 region 2 PF547_14070 PF08281 Sigma-70, region 4 PF547_14080 PF00701 Dihydrodipicolinate synthetase family PF547_14085 PF00083 Sugar (and other) transporter PF547_14105 PF01026 TatD related DNase PF547_14120 PF07693 KAP family P-loop domain PF547_14140 PF00436 Single-strand binding protein family PF547_14195 PF00589 Phage integrase family PF547_14195 PF13356 Arm DNA-binding domain PF547_14295 PF00712 DNA polymerase III beta subunit, N-terminal domain PF547_14295 PF02767 DNA polymerase III beta subunit, central domain PF547_14295 PF02768 DNA polymerase III beta subunit, C-terminal domain PF547_14335 PF05016 ParE toxin of type II toxin-antitoxin system, parDE PF547_14550 PF01695 IstB-like ATP binding protein PF547_14560 PF00145 C-5 cytosine-specific DNA methylase PF547_14640 PF00929 Exonuclease PF547_14715 PF07690 Major Facilitator Superfamily PF547_14720 PF13533 Biotin-lipoyl like PF547_14730 PF03061 Thioesterase superfamily PF547_14735 PF00490 Delta-aminolevulinic acid dehydratase PF547_14740 PF01266 FAD dependent oxidoreductase PF547_14745 PF08338 Domain of unknown function (DUF1731) PF547_14745 PF01370 NAD dependent epimerase/dehydratase family PF547_14765 PF12320 Type 5 capsule protein repressor C-terminal domain PF547_14765 PF00149 Calcineurin-like phosphoesterase PF547_14775 PF01168 Alanine racemase, N-terminal domain PF547_14780 PF00437 Type II/IV secretion system protein PF547_14785 PF00437 Type II/IV secretion system protein PF547_14790 PF01475 Ferric uptake regulator family PF547_14795 PF04355 SmpA / OmlA family PF547_14800 PF03658 RnfH family Ubiquitin PF547_14810 PF01814 Hemerythrin HHE cation binding domain PF547_14815 PF13230 Glutamine amidotransferases class-II PF547_14825 PF00696 Amino acid kinase family PF547_14830 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I PF547_14830 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II PF547_14830 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III PF547_14830 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain PF547_14835 PF00692 dUTPase PF547_14840 PF13361 UvrD-like helicase C-terminal domain PF547_14840 PF00580 UvrD/REP helicase N-terminal domain PF547_14845 PF13488 Glycine zipper PF547_14845 PF00691 OmpA family PF547_14850 PF01553 Acyltransferase PF547_14860 PF03775 Septum formation inhibitor MinC, C-terminal domain PF547_14865 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain PF547_14870 PF03776 Septum formation topological specificity factor MinE PF547_14885 PF01810 LysE type translocator PF547_14890 PF01580 FtsK/SpoIIIE family PF547_14890 PF17854 FtsK alpha domain PF547_14890 PF13491 4TM region of DNA translocase FtsK/SpoIIIE PF547_14890 PF09397 Ftsk gamma domain PF547_14895 PF07992 Pyridine nucleotide-disulphide oxidoreductase PF547_14900 PF03588 Leucyl/phenylalanyl-tRNA protein transferase PF547_14905 PF04377 Arginine-tRNA-protein transferase, C terminus PF547_14905 PF04376 Arginine-tRNA-protein transferase, N terminus PF547_14910 PF00583 Acetyltransferase (GNAT) family PF547_15035 PF04860 Phage portal protein PF547_15115 PF03796 DnaB-like helicase C terminal domain PF547_15115 PF00772 DnaB-like helicase N terminal domain PF547_15175 PF02899 Phage integrase, N-terminal SAM-like domain PF547_15175 PF00589 Phage integrase family PF547_15180 PF00009 Elongation factor Tu GTP binding domain PF547_15180 PF03143 Elongation factor Tu C-terminal domain PF547_15180 PF03144 Elongation factor Tu domain 2 PF547_15185 PF00679 Elongation factor G C-terminus PF547_15185 PF14492 Elongation Factor G, domain II PF547_15185 PF03764 Elongation factor G, domain IV PF547_15185 PF00009 Elongation factor Tu GTP binding domain PF547_15185 PF03144 Elongation factor Tu domain 2 PF547_15190 PF00177 Ribosomal protein S7p/S5e PF547_15195 PF00164 Ribosomal protein S12/S23 PF547_15205 PF02801 Beta-ketoacyl synthase, C-terminal domain PF547_15205 PF00109 Beta-ketoacyl synthase, N-terminal domain PF547_15210 PF03653 Uncharacterised protein family (UPF0093) PF547_15215 PF02678 Pirin PF547_15215 PF05726 Pirin C-terminal cupin domain PF547_15225 PF00795 Carbon-nitrogen hydrolase PF547_15225 PF02540 NAD synthase PF547_15240 PF00970 Oxidoreductase FAD-binding domain PF547_15240 PF00111 2Fe-2S iron-sulfur cluster binding domain PF547_15240 PF00175 Oxidoreductase NAD-binding domain PF547_15245 PF00171 Aldehyde dehydrogenase family PF547_15250 PF00355 Rieske [2Fe-2S] domain PF547_15250 PF00848 Ring hydroxylating alpha subunit (catalytic domain) PF547_15255 PF07859 alpha/beta hydrolase fold PF547_15260 PF02028 BCCT, betaine/carnitine/choline family transporter PF547_15265 PF00180 Isocitrate/isopropylmalate dehydrogenase PF547_15270 PF03466 LysR substrate binding domain PF547_15270 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family PF547_15290 PF00037 4Fe-4S binding domain PF547_15295 PF01467 Cytidylyltransferase-like PF547_15300 PF01668 SmpB protein PF547_15305 PF03358 NADPH-dependent FMN reductase PF547_15310 PF02578 Multi-copper polyphenol oxidoreductase laccase PF547_15315 PF00849 RNA pseudouridylate synthase PF547_15315 PF01479 S4 domain PF547_15320 PF13525 Outer membrane lipoprotein PF547_15325 PF10410 DnaB-helicase binding domain of primase PF547_15325 PF08278 DNA primase DnaG DnaB-binding PF547_15325 PF08275 DNA primase catalytic core, N-terminal domain PF547_15325 PF01807 CHC2 zinc finger PF547_15330 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain PF547_15330 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain PF547_15330 PF01488 Shikimate / quinate 5-dehydrogenase PF547_15340 PF03550 Outer membrane lipoprotein LolB PF547_15345 PF00288 GHMP kinases N terminal domain PF547_15345 PF08544 GHMP kinases C terminal PF547_15365 PF14572 Phosphoribosyl synthetase-associated domain PF547_15365 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase PF547_15370 PF01386 Ribosomal L25p family PF547_15375 PF01195 Peptidyl-tRNA hydrolase PF547_15380 PF02261 Aspartate decarboxylase PF547_15395 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase PF547_15405 PF02581 Thiamine monophosphate synthase PF547_15405 PF08543 Phosphomethylpyrimidine kinase PF547_15405 PF03070 TENA/THI-4/PQQC family PF547_15410 PF04972 BON domain PF547_15410 PF01476 LysM domain PF547_15415 PF00550 Phosphopantetheine attachment site PF547_15425 PF00698 Acyl transferase domain PF547_15430 PF01783 Ribosomal L32p protein family PF547_15435 PF02620 Large ribosomal RNA subunit accumulation protein YceD PF547_15440 PF04315 Elongation factor P hydroxylase PF547_15445 PF01300 Telomere recombination PF547_15450 PF02616 Segregation and condensation protein ScpA PF547_15455 PF04079 Segregation and condensation complex subunit ScpB PF547_15460 PF00849 RNA pseudouridylate synthase PF547_15460 PF01479 S4 domain PF547_15475 PF00155 Aminotransferase class I and II PF547_15480 PF00202 Aminotransferase class-III PF547_15480 PF06968 Biotin and Thiamin Synthesis associated domain PF547_15480 PF04055 Radical SAM superfamily PF547_15485 PF12697 Alpha/beta hydrolase family PF547_15485 PF08241 Methyltransferase domain PF547_15490 PF02358 Trehalose-phosphatase PF547_15495 PF00982 Glycosyltransferase family 20 PF547_15500 PF07690 Major Facilitator Superfamily PF547_15505 PF00210 Ferritin-like domain PF547_15510 PF03119 NAD-dependent DNA ligase C4 zinc finger domain PF547_15510 PF12826 Helix-hairpin-helix motif PF547_15510 PF00533 BRCA1 C Terminus (BRCT) domain PF547_15510 PF01653 NAD-dependent DNA ligase adenylation domain PF547_15510 PF03120 NAD-dependent DNA ligase OB-fold domain PF547_15520 PF02463 RecF/RecN/SMC N terminal domain PF547_15520 PF06470 SMC proteins Flexible Hinge Domain PF547_15530 PF01925 Sulfite exporter TauE/SafE PF547_15540 PF03309 Type III pantothenate kinase PF547_15545 PF00448 SRP54-type protein, GTPase domain PF547_15545 PF02881 SRP54-type protein, helical bundle domain PF547_15545 PF02978 Signal peptide binding domain PF547_15555 PF01207 Dihydrouridine synthase (Dus) PF547_15585 PF00692 dUTPase PF547_15600 PF01048 Phosphorylase superfamily PF547_15605 PF10609 NUBPL iron-transfer P-loop NTPase PF547_15615 PF09334 tRNA synthetases class I (M) PF547_15615 PF01588 Putative tRNA binding domain PF547_15640 PF13533 Biotin-lipoyl like PF547_15645 PF00291 Pyridoxal-phosphate dependent enzyme PF547_15675 PF00175 Oxidoreductase NAD-binding domain PF547_15675 PF00970 Oxidoreductase FAD-binding domain PF547_15680 PF03466 LysR substrate binding domain PF547_15680 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family PF547_15685 PF00313 'Cold-shock' DNA-binding domain PF547_15695 PF00361 Proton-conducting membrane transporter PF547_15700 PF00361 Proton-conducting membrane transporter PF547_15705 PF00361 Proton-conducting membrane transporter PF547_15705 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus PF547_15710 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L PF547_15715 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 PF547_15720 PF12838 4Fe-4S dicluster domain PF547_15725 PF00146 NADH dehydrogenase PF547_15730 PF00384 Molybdopterin oxidoreductase PF547_15730 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region PF547_15730 PF04879 Molybdopterin oxidoreductase Fe4S4 domain PF547_15735 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit PF547_15735 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region PF547_15735 PF10531 SLBB domain PF547_15745 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit PF547_15745 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit PF547_15750 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit PF547_15755 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 PF547_15760 PF17151 Periplasmic sensor domain PF547_15760 PF00990 Diguanylate cyclase, GGDEF domain PF547_15770 PF00512 His Kinase A (phospho-acceptor) domain PF547_15770 PF00672 HAMP domain PF547_15770 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PF547_15775 PF00486 Transcriptional regulatory protein, C terminal PF547_15775 PF00072 Response regulator receiver domain PF547_15785 PF00317 Ribonucleotide reductase, all-alpha domain PF547_15785 PF02867 Ribonucleotide reductase, barrel domain PF547_15785 PF03477 ATP cone domain PF547_15795 PF00268 Ribonucleotide reductase, small chain PF547_15810 PF13756 Stimulus-sensing domain PF547_15810 PF13755 Sensor N-terminal transmembrane domain PF547_15810 PF00512 His Kinase A (phospho-acceptor) domain PF547_15810 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PF547_15810 PF00672 HAMP domain PF547_15880 PF01011 PQQ enzyme repeat PF547_15880 PF13360 PQQ-like domain PF547_15905 PF02567 Phenazine biosynthesis-like protein PF547_15930 PF01613 Flavin reductase like domain PF547_15935 PF08267 Cobalamin-independent synthase, N-terminal domain PF547_15935 PF01717 Cobalamin-independent synthase, Catalytic domain PF547_15945 PF03466 LysR substrate binding domain PF547_15945 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family PF547_15950 PF01810 LysE type translocator PF547_15960 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term PF547_15960 PF12833 Helix-turn-helix domain PF547_15965 PF07687 Peptidase dimerisation domain PF547_15965 PF01546 Peptidase family M20/M25/M40 PF547_15975 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family PF547_15975 PF03466 LysR substrate binding domain PF547_15980 PF07690 Major Facilitator Superfamily PF547_15990 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family PF547_15990 PF03466 LysR substrate binding domain PF547_15995 PF14537 Cytochrome c3 PF547_15995 PF00890 FAD binding domain PF547_16005 PF02515 CoA-transferase family III PF547_16010 PF07690 Major Facilitator Superfamily PF547_16015 PF02771 Acyl-CoA dehydrogenase, N-terminal domain PF547_16015 PF02770 Acyl-CoA dehydrogenase, middle domain PF547_16015 PF00441 Acyl-CoA dehydrogenase, C-terminal domain PF547_16020 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family PF547_16020 PF03466 LysR substrate binding domain PF547_16025 PF08240 Alcohol dehydrogenase GroES-like domain PF547_16025 PF00107 Zinc-binding dehydrogenase PF547_16030 PF00962 Adenosine/AMP deaminase PF547_16055 PF02445 Quinolinate synthetase A protein PF547_16060 PF01960 ArgJ family PF547_16065 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain PF547_16065 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain PF547_16070 PF00893 Small Multidrug Resistance protein PF547_16080 PF05275 Copper resistance protein B precursor (CopB) PF547_16085 PF00394 Multicopper oxidase PF547_16085 PF07731 Multicopper oxidase PF547_16085 PF07732 Multicopper oxidase PF547_16100 PF00834 Ribulose-phosphate 3 epimerase family PF547_16110 PF00756 Putative esterase PF547_16120 PF04445 Putative SAM-dependent methyltransferase PF547_16125 PF00814 Glycoprotease family PF547_16130 PF00132 Bacterial transferase hexapeptide (six repeats) PF547_16135 PF00293 NUDIX domain PF547_16180 PF04715 Anthranilate synthase component I, N terminal region PF547_16180 PF00425 chorismate binding enzyme PF547_16185 PF00155 Aminotransferase class I and II PF547_16190 PF00815 Histidinol dehydrogenase PF547_16195 PF01634 ATP phosphoribosyltransferase PF547_16200 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) PF547_16205 PF01722 BolA-like protein PF547_16210 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein PF547_16215 PF00309 Sigma-54 factor, Activator interacting domain (AID) PF547_16215 PF04963 Sigma-54 factor, core binding domain PF547_16215 PF04552 Sigma-54, DNA binding domain PF547_16260 PF00795 Carbon-nitrogen hydrolase PF547_16270 PF01047 MarR family PF547_16275 PF02566 OsmC-like protein PF547_16280 PF00437 Type II/IV secretion system protein PF547_16310 PF01612 3'-5' exonuclease PF547_16310 PF00476 DNA polymerase family A PF547_16310 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain PF547_16310 PF01367 5'-3' exonuclease, C-terminal SAM fold PF547_16315 PF02325 YGGT family PF547_16320 PF03807 NADP oxidoreductase coenzyme F420-dependent PF547_16320 PF14748 Pyrroline-5-carboxylate reductase dimerisation PF547_16325 PF11734 TilS substrate C-terminal domain PF547_16325 PF09179 TilS substrate binding domain PF547_16325 PF01171 PP-loop family PF547_16330 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit PF547_16335 PF02541 Ppx/GppA phosphatase family PF547_16340 PF00085 Thioredoxin PF547_16345 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain PF547_16345 PF07498 Rho termination factor, N-terminal domain PF547_16345 PF07497 Rho termination factor, RNA-binding domain PF547_16360 PF00216 Bacterial DNA-binding protein PF547_16365 PF03483 B3/4 domain PF547_16365 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain PF547_16365 PF01588 Putative tRNA binding domain PF547_16365 PF03484 tRNA synthetase B5 domain PF547_16365 PF03147 Ferredoxin-fold anticodon binding domain PF547_16370 PF01409 tRNA synthetases class II core domain (F) PF547_16370 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain PF547_16390 PF00453 Ribosomal protein L20 PF547_16395 PF01632 Ribosomal protein L35 PF547_16405 PF07690 Major Facilitator Superfamily PF547_16410 PF09335 SNARE associated Golgi protein PF547_16415 PF00043 Glutathione S-transferase, C-terminal domain PF547_16415 PF02798 Glutathione S-transferase, N-terminal domain PF547_16420 PF00707 Translation initiation factor IF-3, C-terminal domain PF547_16420 PF05198 Translation initiation factor IF-3, N-terminal domain PF547_16425 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain PF547_16425 PF02824 TGS domain PF547_16425 PF03129 Anticodon binding domain PF547_16425 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) PF547_16430 PF00501 AMP-binding enzyme PF547_16430 PF13193 AMP-binding enzyme C-terminal domain PF547_16435 PF04751 Protein of unknown function (DUF615) PF547_16440 PF00381 PTS HPr component phosphorylation site PF547_16445 PF03668 P-loop ATPase protein family PF547_16450 PF02569 Pantoate-beta-alanine ligase PF547_16455 PF02548 Ketopantoate hydroxymethyltransferase PF547_16460 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) PF547_16465 PF12626 Polymerase A arginine-rich C-terminus PF547_16465 PF12627 Probable RNA and SrmB- binding site of polymerase A PF547_16465 PF01743 Poly A polymerase head domain PF547_16475 PF03819 MazG nucleotide pyrophosphohydrolase domain PF547_16485 PF13291 ACT domain PF547_16485 PF04607 Region found in RelA / SpoT proteins PF547_16485 PF02824 TGS domain PF547_16490 PF05958 tRNA (Uracil-5-)-methyltransferase PF547_16500 PF00291 Pyridoxal-phosphate dependent enzyme PF547_16505 PF00672 HAMP domain PF547_16505 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PF547_16505 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) PF547_16505 PF01627 Hpt domain PF547_16505 PF00512 His Kinase A (phospho-acceptor) domain PF547_16505 PF00072 Response regulator receiver domain PF547_16510 PF00378 Enoyl-CoA hydratase/isomerase PF547_16515 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase PF547_16515 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase PF547_16520 PF01261 Xylose isomerase-like TIM barrel PF547_16530 PF00106 short chain dehydrogenase PF547_16535 PF02233 NAD(P) transhydrogenase beta subunit PF547_16540 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch PF547_16545 PF01262 Alanine dehydrogenase/PNT, C-terminal domain PF547_16545 PF05222 Alanine dehydrogenase/PNT, N-terminal domain PF547_16550 PF00892 EamA-like transporter family PF547_16560 PF07690 Major Facilitator Superfamily PF547_16565 PF01207 Dihydrouridine synthase (Dus) PF547_16575 PF03466 LysR substrate binding domain PF547_16575 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family PF547_16585 PF00899 ThiF family PF547_16595 PF00330 Aconitase family (aconitate hydratase) PF547_16595 PF00694 Aconitase C-terminal domain PF547_16600 PF01026 TatD related DNase PF547_16615 PF00009 Elongation factor Tu GTP binding domain PF547_16615 PF03144 Elongation factor Tu domain 2 PF547_16615 PF16658 Class II release factor RF3, C-terminal domain PF547_16635 PF03707 Bacterial signalling protein N terminal repeat PF547_16635 PF00990 Diguanylate cyclase, GGDEF domain PF547_16635 PF00563 EAL domain PF547_16640 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain PF547_16640 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain PF547_16645 PF10369 Small subunit of acetolactate synthase PF547_16650 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain PF547_16650 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain PF547_16650 PF00205 Thiamine pyrophosphate enzyme, central domain PF547_16660 PF08264 Anticodon-binding domain of tRNA PF547_16660 PF00133 tRNA synthetases class I (I, L, M and V) PF547_16660 PF13603 Leucyl-tRNA synthetase, Domain 2 PF547_16660 PF09334 tRNA synthetases class I (M) PF547_16675 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion PF547_16680 PF00005 ABC transporter PF547_16680 PF02687 FtsX-like permease family PF547_16680 PF12704 MacB-like periplasmic core domain PF547_16685 PF02321 Outer membrane efflux protein PF547_16700 PF00929 Exonuclease PF547_16705 PF03193 RsgA GTPase PF547_16715 PF00462 Glutaredoxin PF547_16720 PF02556 Preprotein translocase subunit SecB PF547_16735 PF00109 Beta-ketoacyl synthase, N-terminal domain PF547_16735 PF02801 Beta-ketoacyl synthase, C-terminal domain PF547_16750 PF00109 Beta-ketoacyl synthase, N-terminal domain PF547_16750 PF02801 Beta-ketoacyl synthase, C-terminal domain PF547_16760 PF04820 Tryptophan halogenase PF547_16780 PF00221 Aromatic amino acid lyase PF547_16795 PF00501 AMP-binding enzyme PF547_16795 PF13193 AMP-binding enzyme C-terminal domain PF547_16805 PF00550 Phosphopantetheine attachment site PF547_16810 PF00550 Phosphopantetheine attachment site PF547_16825 PF01926 50S ribosome-binding GTPase PF547_16825 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal PF547_16830 PF13360 PQQ-like domain PF547_16840 PF13393 Histidyl-tRNA synthetase PF547_16840 PF03129 Anticodon binding domain PF547_16845 PF04551 GcpE protein PF547_16850 PF13464 Domain of unknown function (DUF4115) PF547_16860 PF04055 Radical SAM superfamily PF547_16865 PF00334 Nucleoside diphosphate kinase PF547_16870 PF04384 Iron-sulphur cluster assembly PF547_16875 PF01569 PAP2 superfamily PF547_16880 PF00534 Glycosyl transferases group 1 PF547_16880 PF13439 Glycosyltransferase Family 4 PF547_16885 PF17804 Tail specific protease N-terminal domain PF547_16885 PF03572 Peptidase family S41 PF547_16885 PF00595 PDZ domain PF547_16885 PF11818 C-terminal domain of tail specific protease (DUF3340) PF547_16890 PF00933 Glycosyl hydrolase family 3 N terminal domain PF547_16900 PF00561 alpha/beta hydrolase fold PF547_16905 PF00171 Aldehyde dehydrogenase family PF547_16910 PF00171 Aldehyde dehydrogenase family PF547_16915 PF01202 Shikimate kinase PF547_16920 PF02447 GntP family permease PF547_16925 PF01081 KDPG and KHG aldolase PF547_16930 PF00920 Dehydratase family PF547_16940 PF00871 Acetokinase family PF547_16945 PF07085 DRTGG domain PF547_16945 PF01515 Phosphate acetyl/butaryl transferase PF547_16950 PF05681 Fumarate hydratase (Fumerase) PF547_16950 PF05683 Fumarase C-terminus PF547_16965 PF07724 AAA domain (Cdc48 subfamily) PF547_16965 PF10431 C-terminal, D2-small domain, of ClpB protein PF547_16965 PF06689 ClpX C4-type zinc finger PF547_16970 PF00574 Clp protease PF547_16975 PF05698 Bacterial trigger factor protein (TF) C-terminus PF547_16975 PF05697 Bacterial trigger factor protein (TF) PF547_16975 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase PF547_16980 PF07715 TonB-dependent Receptor Plug Domain PF547_16980 PF00593 TonB dependent receptor PF547_16985 PF13640 2OG-Fe(II) oxygenase superfamily PF547_16985 PF18331 PKHD-type hydroxylase C-terminal domain PF547_16990 PF08502 LeuA allosteric (dimerisation) domain PF547_16990 PF00682 HMGL-like PF547_16995 PF00561 alpha/beta hydrolase fold PF547_17000 PF00561 alpha/beta hydrolase fold PF547_17000 PF07021 Methionine biosynthesis protein MetW PF547_17010 PF01725 Ham1 family PF547_17020 PF02416 mttA/Hcf106 family PF547_17025 PF02416 mttA/Hcf106 family PF547_17030 PF00902 Sec-independent protein translocase protein (TatC) PF547_17050 PF01790 Prolipoprotein diacylglyceryl transferase PF547_17065 PF00303 Thymidylate synthase PF547_17070 PF00186 Dihydrofolate reductase PF547_17080 PF01625 Peptide methionine sulfoxide reductase PF547_17090 PF01618 MotA/TolQ/ExbB proton channel family PF547_17100 PF01842 ACT domain PF547_17100 PF00551 Formyl transferase PF547_17110 PF00171 Aldehyde dehydrogenase family PF547_17115 PF00830 Ribosomal L28 family PF547_17120 PF00471 Ribosomal protein L33 PF547_17125 PF00999 Sodium/hydrogen exchanger family PF547_17125 PF02254 TrkA-N domain PF547_17145 PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) PF547_17150 PF00580 UvrD/REP helicase N-terminal domain PF547_17150 PF13361 UvrD-like helicase C-terminal domain PF547_17165 PF08272 Topoisomerase I zinc-ribbon-like PF547_17165 PF01131 DNA topoisomerase PF547_17165 PF01751 Toprim domain PF547_17165 PF01396 Topoisomerase DNA binding C4 zinc finger PF547_17175 PF01638 HxlR-like helix-turn-helix PF547_17180 PF08240 Alcohol dehydrogenase GroES-like domain PF547_17180 PF00107 Zinc-binding dehydrogenase PF547_17185 PF04102 SlyX PF547_17190 PF12848 ABC transporter PF547_17190 PF16326 ABC transporter C-terminal domain PF547_17190 PF00005 ABC transporter PF547_17195 PF01810 LysE type translocator PF547_17200 PF03279 Bacterial lipid A biosynthesis acyltransferase PF547_17210 PF00375 Sodium:dicarboxylate symporter family PF547_17220 PF02774 Semialdehyde dehydrogenase, dimerisation domain PF547_17220 PF01118 Semialdehyde dehydrogenase, NAD binding domain PF547_17240 PF01416 tRNA pseudouridine synthase PF547_17250 PF01176 Translation initiation factor 1A / IF-1 PF547_17265 PF00180 Isocitrate/isopropylmalate dehydrogenase PF547_17275 PF00694 Aconitase C-terminal domain PF547_17280 PF00330 Aconitase family (aconitate hydratase) PF547_17290 PF03466 LysR substrate binding domain PF547_17290 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family PF547_17310 PF00293 NUDIX domain PF547_17315 PF01590 GAF domain PF547_17315 PF00391 PEP-utilising enzyme, mobile domain PF547_17315 PF02896 PEP-utilising enzyme, TIM barrel domain PF547_17315 PF05524 PEP-utilising enzyme, N-terminal PF547_17320 PF00141 Peroxidase PF547_17325 PF12706 Beta-lactamase superfamily domain PF547_17330 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family PF547_17330 PF03466 LysR substrate binding domain PF547_17340 PF02798 Glutathione S-transferase, N-terminal domain PF547_17345 PF08279 HTH domain PF547_17345 PF13280 WYL domain PF547_17350 PF13419 Haloacid dehalogenase-like hydrolase PF547_17355 PF00849 RNA pseudouridylate synthase PF547_17355 PF01479 S4 domain PF547_17360 PF12111 Polyribonucleotide phosphorylase C terminal PF547_17360 PF10150 Ribonuclease E/G family PF547_17360 PF00575 S1 RNA binding domain PF547_17365 PF00501 AMP-binding enzyme PF547_17365 PF13193 AMP-binding enzyme C-terminal domain PF547_17380 PF03466 LysR substrate binding domain PF547_17380 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family PF547_17385 PF00106 short chain dehydrogenase PF547_17390 PF04055 Radical SAM superfamily PF547_17390 PF06969 HemN C-terminal domain PF547_17400 PF01554 MatE PF547_17405 PF02771 Acyl-CoA dehydrogenase, N-terminal domain PF547_17405 PF02770 Acyl-CoA dehydrogenase, middle domain PF547_17405 PF08028 Acyl-CoA dehydrogenase, C-terminal domain PF547_17410 PF02771 Acyl-CoA dehydrogenase, N-terminal domain PF547_17410 PF08028 Acyl-CoA dehydrogenase, C-terminal domain PF547_17415 PF03109 ABC1 family PF547_17420 PF01197 Ribosomal protein L31 PF547_17435 PF02537 CrcB-like protein, Camphor Resistance (CrcB) PF547_17455 PF03884 DNA gyrase inhibitor YacG PF547_17460 PF00753 Metallo-beta-lactamase superfamily PF547_17465 PF00762 Ferrochelatase PF547_17475 PF01177 Asp/Glu/Hydantoin racemase PF547_17490 PF01206 Sulfurtransferase TusA PF547_17495 PF00571 CBS domain PF547_17495 PF03471 Transporter associated domain PF547_17500 PF00795 Carbon-nitrogen hydrolase PF547_17505 PF01588 Putative tRNA binding domain PF547_17515 PF08334 Type II secretion system (T2SS), protein G PF547_17515 PF07963 Prokaryotic N-terminal methylation motif PF547_17520 PF00482 Type II secretion system (T2SS), protein F PF547_17525 PF18074 Primosomal protein N C-terminal domain PF547_17525 PF18319 PriA DNA helicase Cys-rich region (CRR) domain PF547_17525 PF00271 Helicase conserved C-terminal domain PF547_17525 PF00270 DEAD/DEAH box helicase PF547_17525 PF17764 3′ DNA-binding domain (3′BD) PF547_17530 PF00999 Sodium/hydrogen exchanger family PF547_17530 PF02254 TrkA-N domain PF547_17535 PF01430 Hsp33 protein PF547_17545 PF00226 DnaJ domain PF547_17545 PF01556 DnaJ C terminal domain PF547_17555 PF01544 CorA-like Mg2+ transporter protein PF547_17560 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain PF547_17560 PF00013 KH domain PF547_17560 PF00575 S1 RNA binding domain PF547_17560 PF01138 3' exoribonuclease family, domain 1 PF547_17560 PF03725 3' exoribonuclease family, domain 2 PF547_17565 PF00312 Ribosomal protein S15 PF547_17570 PF00144 Beta-lactamase PF547_17575 PF13538 UvrD-like helicase C-terminal domain PF547_17580 PF12705 PD-(D/E)XK nuclease superfamily PF547_17580 PF00580 UvrD/REP helicase N-terminal domain PF547_17580 PF13361 UvrD-like helicase C-terminal domain PF547_17585 PF17946 RecC C-terminal domain PF547_17595 PF03976 Polyphosphate kinase 2 (PPK2) PF547_17605 PF01209 ubiE/COQ5 methyltransferase family PF547_17615 PF03109 ABC1 family PF547_17620 PF01494 FAD binding domain PF547_17625 PF01502 Phosphoribosyl-AMP cyclohydrolase PF547_17640 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus PF547_17640 PF13244 Domain of unknown function (DUF4040) PF547_17640 PF04039 Domain related to MnhB subunit of Na+/H+ antiporter PF547_17640 PF00361 Proton-conducting membrane transporter PF547_17645 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L PF547_17650 PF00361 Proton-conducting membrane transporter PF547_17655 PF01899 Na+/H+ ion antiporter subunit PF547_17660 PF04066 Multiple resistance and pH regulation protein F (MrpF / PhaF) PF547_17665 PF03334 Na+/H+ antiporter subunit PF547_17670 PF02033 Ribosome-binding factor A PF547_17675 PF00009 Elongation factor Tu GTP binding domain PF547_17675 PF11987 Translation-initiation factor 2 PF547_17675 PF08364 Bacterial translation initiation factor IF-2 associated region PF547_17675 PF04760 Translation initiation factor IF-2, N-terminal region PF547_17680 PF13184 NusA-like KH domain PF547_17680 PF08529 NusA N-terminal domain PF547_17680 PF00575 S1 RNA binding domain PF547_17685 PF02576 RimP N-terminal domain PF547_17685 PF17384 RimP C-terminal SH3 domain PF547_17705 PF03840 Preprotein translocase SecG subunit PF547_17710 PF00121 Triosephosphate isomerase PF547_17715 PF00437 Type II/IV secretion system protein PF547_17715 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain PF547_17720 PF00482 Type II secretion system (T2SS), protein F PF547_17725 PF01478 Type IV leader peptidase family PF547_17725 PF06750 Bacterial Peptidase A24 N-terminal domain PF547_17730 PF01121 Dephospho-CoA kinase PF547_17740 PF00588 SpoU rRNA Methylase family PF547_17740 PF08032 RNA 2'-O ribose methyltransferase substrate binding PF547_17745 PF06865 Pyrimidine/purine nucleoside phosphorylase PF547_17755 PF02463 RecF/RecN/SMC N terminal domain PF547_17760 PF02622 Uncharacterized ACR, COG1678 PF547_17765 PF03652 Holliday junction resolvase PF547_17770 PF13533 Biotin-lipoyl like PF547_17795 PF02805 Metal binding domain of Ada PF547_17795 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain PF547_17795 PF12833 Helix-turn-helix domain PF547_17795 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain PF547_17800 PF01066 CDP-alcohol phosphatidyltransferase PF547_17810 PF02151 UvrB/uvrC motif PF547_17810 PF08459 UvrC Helix-hairpin-helix N-terminal PF547_17810 PF01541 GIY-YIG catalytic domain PF547_17830 PF00378 Enoyl-CoA hydratase/isomerase PF547_17830 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain PF547_17830 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain PF547_17835 PF00108 Thiolase, N-terminal domain PF547_17835 PF02803 Thiolase, C-terminal domain PF547_17855 PF00376 MerR family regulatory protein PF547_17855 PF09278 MerR, DNA binding PF547_17865 PF01323 DSBA-like thioredoxin domain PF547_17880 PF00183 Hsp90 protein PF547_17880 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PF547_17895 PF13726 Na+-H+ antiporter family PF547_17895 PF03553 Na+/H+ antiporter family PF547_17900 PF00561 alpha/beta hydrolase fold PF547_17920 PF00623 RNA polymerase Rpb1, domain 2 PF547_17920 PF04983 RNA polymerase Rpb1, domain 3 PF547_17920 PF05000 RNA polymerase Rpb1, domain 4 PF547_17920 PF04998 RNA polymerase Rpb1, domain 5 PF547_17920 PF04997 RNA polymerase Rpb1, domain 1 PF547_17925 PF04563 RNA polymerase beta subunit PF547_17925 PF04561 RNA polymerase Rpb2, domain 2 PF547_17925 PF00562 RNA polymerase Rpb2, domain 6 PF547_17925 PF04560 RNA polymerase Rpb2, domain 7 PF547_17925 PF04565 RNA polymerase Rpb2, domain 3 PF547_17925 PF10385 RNA polymerase beta subunit external 1 domain PF547_17930 PF00542 Ribosomal protein L7/L12 C-terminal domain PF547_17930 PF16320 Ribosomal protein L7/L12 dimerisation domain PF547_17935 PF00466 Ribosomal protein L10 PF547_17940 PF00687 Ribosomal protein L1p/L10e family PF547_17945 PF00298 Ribosomal protein L11, RNA binding domain PF547_17945 PF03946 Ribosomal protein L11, N-terminal domain PF547_17950 PF00467 KOW motif PF547_17950 PF02357 Transcription termination factor nusG PF547_17955 PF00584 SecE/Sec61-gamma subunits of protein translocation complex PF547_17965 PF00009 Elongation factor Tu GTP binding domain PF547_17965 PF03143 Elongation factor Tu C-terminal domain PF547_17965 PF03144 Elongation factor Tu domain 2 PF547_17990 PF04715 Anthranilate synthase component I, N terminal region PF547_17990 PF00425 chorismate binding enzyme PF547_17995 PF13419 Haloacid dehalogenase-like hydrolase PF547_18000 PF00498 FHA domain PF547_18000 PF12401 Protein of unknown function (DUF2662) PF547_18005 PF00263 Bacterial type II and III secretion system protein PF547_18005 PF03958 Bacterial type II/III secretion system short domain PF547_18020 PF00816 H-NS histone family PF547_18045 PF03900 Porphobilinogen deaminase, C-terminal domain PF547_18045 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain PF547_18050 PF00072 Response regulator receiver domain PF547_18050 PF04397 LytTr DNA-binding domain PF547_18055 PF06580 Histidine kinase PF547_18055 PF07694 5TMR of 5TMR-LYT PF547_18055 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PF547_18060 PF00206 Lyase PF547_18060 PF14698 Argininosuccinate lyase C-terminal PF547_18065 PF04362 Bacterial Fe(2+) trafficking PF547_18070 PF01895 PhoU domain PF547_18075 PF02321 Outer membrane efflux protein PF547_18080 PF00892 EamA-like transporter family PF547_18095 PF13667 ThiC-associated domain PF547_18095 PF01964 Radical SAM ThiC family PF547_18100 PF00293 NUDIX domain PF547_18105 PF00149 Calcineurin-like phosphoesterase PF547_18110 PF01258 Prokaryotic dksA/traR C4-type zinc finger PF547_18115 PF00749 tRNA synthetases class I (E and Q), catalytic domain PF547_18120 PF01098 Cell cycle protein PF547_18125 PF08245 Mur ligase middle domain PF547_18125 PF02875 Mur ligase family, glutamate ligase domain PF547_18135 PF07664 Ferrous iron transport protein B C terminus PF547_18135 PF02421 Ferrous iron transport protein B PF547_18135 PF07670 Nucleoside recognition PF547_18145 PF02899 Phage integrase, N-terminal SAM-like domain PF547_18145 PF00589 Phage integrase family PF547_18150 PF10411 Disulfide bond isomerase protein N-terminus PF547_18150 PF13098 Thioredoxin-like domain PF547_18155 PF01842 ACT domain PF547_18155 PF00742 Homoserine dehydrogenase PF547_18155 PF03447 Homoserine dehydrogenase, NAD binding domain PF547_18160 PF00291 Pyridoxal-phosphate dependent enzyme PF547_18165 PF00768 D-alanyl-D-alanine carboxypeptidase PF547_18170 PF00196 Bacterial regulatory proteins, luxR family PF547_18170 PF00072 Response regulator receiver domain PF547_18175 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PF547_18175 PF00512 His Kinase A (phospho-acceptor) domain PF547_18180 PF02954 Bacterial regulatory protein, Fis family PF547_18180 PF00072 Response regulator receiver domain PF547_18180 PF00158 Sigma-54 interaction domain PF547_18185 PF00595 PDZ domain PF547_18185 PF03572 Peptidase family S41 PF547_18190 PF06415 BPG-independent PGAM N-terminus (iPGM_N) PF547_18190 PF01676 Metalloenzyme superfamily PF547_18195 PF03739 Lipopolysaccharide export system permease LptF/LptG PF547_18205 PF00883 Cytosol aminopeptidase family, catalytic domain PF547_18205 PF02789 Cytosol aminopeptidase family, N-terminal domain PF547_18225 PF00677 Lumazine binding domain PF547_18235 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region PF547_18235 PF01872 RibD C-terminal domain PF547_18240 PF03477 ATP cone domain PF547_18245 PF00909 Ammonium Transporter Family PF547_18250 PF00543 Nitrogen regulatory protein P-II PF547_18270 PF01636 Phosphotransferase enzyme family PF547_18275 PF04655 Aminoglycoside/hydroxyurea antibiotic resistance kinase PF547_18295 PF00440 Bacterial regulatory proteins, tetR family PF547_18295 PF02909 Tetracyclin repressor-like, C-terminal domain PF547_18300 PF07690 Major Facilitator Superfamily PF547_18315 PF00905 Penicillin binding protein transpeptidase domain PF547_18340 PF00916 Sulfate permease family PF547_18340 PF01740 STAS domain PF547_18345 PF00582 Universal stress protein family PF547_18375 PF00665 Integrase core domain PF547_18400 PF00701 Dihydrodipicolinate synthetase family PF547_18415 PF03573 outer membrane porin, OprD family PF547_18420 PF00719 Inorganic pyrophosphatase PF547_18435 PF00501 AMP-binding enzyme PF547_18435 PF13193 AMP-binding enzyme C-terminal domain PF547_18440 PF03989 DNA gyrase C-terminal domain, beta-propeller PF547_18440 PF00521 DNA gyrase/topoisomerase IV, subunit A PF547_18445 PF07690 Major Facilitator Superfamily PF547_18450 PF03458 UPF0126 domain PF547_18455 PF02810 SEC-C motif PF547_18460 PF03741 Integral membrane protein TerC family PF547_18460 PF03471 Transporter associated domain PF547_18465 PF03641 Possible lysine decarboxylase PF547_18470 PF07690 Major Facilitator Superfamily PF547_18480 PF11798 IMS family HHH motif PF547_18480 PF11799 impB/mucB/samB family C-terminal domain PF547_18480 PF00817 impB/mucB/samB family PF547_18500 PF04055 Radical SAM superfamily PF547_18500 PF11842 Domain of unknown function (DUF3362) PF547_18500 PF08497 Radical SAM N-terminal PF547_18520 PF03358 NADPH-dependent FMN reductase PF547_18530 PF00291 Pyridoxal-phosphate dependent enzyme PF547_18590 PF01327 Polypeptide deformylase PF547_18600 PF02481 DNA recombination-mediator protein A PF547_18600 PF17782 DprA winged helix domain PF547_18605 PF01300 Telomere recombination PF547_18610 PF00892 EamA-like transporter family PF547_18615 PF00440 Bacterial regulatory proteins, tetR family PF547_18620 PF07690 Major Facilitator Superfamily PF547_18630 PF00255 Glutathione peroxidase PF547_18640 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain PF547_18645 PF02874 ATP synthase alpha/beta family, beta-barrel domain PF547_18645 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain PF547_18650 PF00231 ATP synthase PF547_18655 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain PF547_18655 PF00306 ATP synthase alpha/beta chain, C terminal domain PF547_18655 PF02874 ATP synthase alpha/beta family, beta-barrel domain PF547_18660 PF00213 ATP synthase delta (OSCP) subunit PF547_18665 PF00430 ATP synthase B/B' CF(0) PF547_18670 PF00137 ATP synthase subunit C PF547_18675 PF00119 ATP synthase A chain PF547_18695 PF00005 ABC transporter PF547_18700 PF00950 ABC 3 transport family PF547_18705 PF01810 LysE type translocator PF547_18710 PF04261 Dyp-type peroxidase family PF547_18720 PF00390 Malic enzyme, N-terminal domain PF547_18720 PF03949 Malic enzyme, NAD binding domain PF547_18725 PF03485 Arginyl tRNA synthetase N terminal domain PF547_18725 PF05746 DALR anticodon binding domain PF547_18725 PF00750 tRNA synthetases class I (R) PF547_18745 PF02678 Pirin PF547_18745 PF05726 Pirin C-terminal cupin domain PF547_18755 PF03551 Transcriptional regulator PadR-like family PF547_18760 PF13427 Domain of unknown function (DUF4111) PF547_18760 PF01909 Nucleotidyltransferase domain PF547_18765 PF00958 GMP synthase C terminal domain PF547_18765 PF00117 Glutamine amidotransferase class-I PF547_18765 PF02540 NAD synthase PF547_18770 PF04286 Protein of unknown function (DUF445) PF547_18775 PF07681 DoxX PF547_18780 PF09335 SNARE associated Golgi protein PF547_18795 PF13614 AAA domain PF547_18805 PF01722 BolA-like protein PF547_18820 PF01648 4'-phosphopantetheinyl transferase superfamily PF547_18825 PF12697 Alpha/beta hydrolase family PF547_18845 PF00975 Thioesterase domain PF547_18845 PF16197 Ketoacyl-synthetase C-terminal extension PF547_18845 PF00109 Beta-ketoacyl synthase, N-terminal domain PF547_18845 PF02801 Beta-ketoacyl synthase, C-terminal domain PF547_18845 PF08242 Methyltransferase domain PF547_18845 PF14765 Polyketide synthase dehydratase PF547_18845 PF00550 Phosphopantetheine attachment site PF547_18850 PF02771 Acyl-CoA dehydrogenase, N-terminal domain PF547_18850 PF02770 Acyl-CoA dehydrogenase, middle domain PF547_18850 PF00441 Acyl-CoA dehydrogenase, C-terminal domain PF547_18855 PF00501 AMP-binding enzyme PF547_18860 PF00196 Bacterial regulatory proteins, luxR family PF547_18860 PF03472 Autoinducer binding domain PF547_18870 PF00765 Autoinducer synthase PF547_18875 PF07690 Major Facilitator Superfamily PF547_18875 PF00083 Sugar (and other) transporter PF547_18880 PF00378 Enoyl-CoA hydratase/isomerase PF547_18885 PF00378 Enoyl-CoA hydratase/isomerase PF547_18890 PF02771 Acyl-CoA dehydrogenase, N-terminal domain PF547_18890 PF02770 Acyl-CoA dehydrogenase, middle domain PF547_18890 PF00441 Acyl-CoA dehydrogenase, C-terminal domain PF547_18895 PF00501 AMP-binding enzyme PF547_18895 PF13193 AMP-binding enzyme C-terminal domain PF547_18900 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase PF547_18900 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase PF547_18905 PF00171 Aldehyde dehydrogenase family PF547_18915 PF00324 Amino acid permease PF547_18920 PF00324 Amino acid permease PF547_18925 PF01042 Endoribonuclease L-PSP PF547_18930 PF00842 Alanine racemase, C-terminal domain PF547_18930 PF01168 Alanine racemase, N-terminal domain PF547_18935 PF01266 FAD dependent oxidoreductase PF547_18940 PF01037 Lrp/AsnC ligand binding domain PF547_18950 PF00593 TonB dependent receptor PF547_18950 PF07715 TonB-dependent Receptor Plug Domain PF547_18965 PF00849 RNA pseudouridylate synthase PF547_18980 PF00440 Bacterial regulatory proteins, tetR family PF547_18980 PF08361 MAATS-type transcriptional repressor, C-terminal region PF547_18990 PF00109 Beta-ketoacyl synthase, N-terminal domain PF547_18990 PF02801 Beta-ketoacyl synthase, C-terminal domain PF547_19025 PF00694 Aconitase C-terminal domain PF547_19025 PF00330 Aconitase family (aconitate hydratase) PF547_19030 PF00285 Citrate synthase, C-terminal domain PF547_19040 PF00392 Bacterial regulatory proteins, gntR family PF547_19040 PF07729 FCD domain PF547_19050 PF00155 Aminotransferase class I and II PF547_19055 PF01565 FAD binding domain PF547_19055 PF09330 D-lactate dehydrogenase, membrane binding PF547_19060 PF01070 FMN-dependent dehydrogenase PF547_19065 PF07729 FCD domain PF547_19065 PF00392 Bacterial regulatory proteins, gntR family PF547_19070 PF02652 L-lactate permease PF547_19075 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II PF547_19075 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III PF547_19075 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain PF547_19075 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I PF547_19080 PF16363 GDP-mannose 4,6 dehydratase PF547_19085 PF00342 Phosphoglucose isomerase PF547_19090 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain PF547_19090 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain PF547_19090 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain PF547_19095 PF00483 Nucleotidyl transferase PF547_19100 PF02397 Bacterial sugar transferase PF547_19105 PF00535 Glycosyl transferase family 2 PF547_19110 PF00534 Glycosyl transferases group 1 PF547_19125 PF00534 Glycosyl transferases group 1 PF547_19125 PF13439 Glycosyltransferase Family 4 PF547_19130 PF14602 Hexapeptide repeat of succinyl-transferase PF547_19130 PF00132 Bacterial transferase hexapeptide (six repeats) PF547_19130 PF12464 Maltose acetyltransferase PF547_19140 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family PF547_19145 PF00132 Bacterial transferase hexapeptide (six repeats) PF547_19150 PF02894 Oxidoreductase family, C-terminal alpha/beta domain PF547_19150 PF01408 Oxidoreductase family, NAD-binding Rossmann fold PF547_19155 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain PF547_19155 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain PF547_19155 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain PF547_19160 PF02563 Polysaccharide biosynthesis/export protein PF547_19160 PF18412 Outer-membrane lipoprotein Wza C-terminal domain PF547_19160 PF10531 SLBB domain PF547_19165 PF01451 Low molecular weight phosphotyrosine protein phosphatase PF547_19170 PF02706 Chain length determinant protein PF547_19170 PF13807 G-rich domain on putative tyrosine kinase PF547_19170 PF13614 AAA domain PF547_19175 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase PF547_19175 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase PF547_19180 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase PF547_19180 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase PF547_19185 PF03023 Lipid II flippase MurJ PF547_19190 PF01510 N-acetylmuramoyl-L-alanine amidase PF547_19195 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain PF547_19195 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain PF547_19205 PF04185 Phosphoesterase family PF547_19205 PF05506 Domain of unknown function (DUF756) PF547_19215 PF03725 3' exoribonuclease family, domain 2 PF547_19215 PF01138 3' exoribonuclease family, domain 1 PF547_19220 PF00487 Fatty acid desaturase PF547_19225 PF00175 Oxidoreductase NAD-binding domain PF547_19230 PF00440 Bacterial regulatory proteins, tetR family PF547_19235 PF00440 Bacterial regulatory proteins, tetR family PF547_19235 PF08360 QacR-like protein, C-terminal region PF547_19240 PF01323 DSBA-like thioredoxin domain PF547_19250 PF13419 Haloacid dehalogenase-like hydrolase PF547_19255 PF00106 short chain dehydrogenase PF547_19270 PF00583 Acetyltransferase (GNAT) family PF547_19270 PF00696 Amino acid kinase family PF547_19275 PF09084 NMT1/THI5 like PF547_19280 PF09084 NMT1/THI5 like PF547_19285 PF00296 Luciferase-like monooxygenase PF547_19290 PF00528 Binding-protein-dependent transport system inner membrane component PF547_19295 PF00005 ABC transporter PF547_19300 PF08362 YcdC-like protein, C-terminal region PF547_19300 PF00440 Bacterial regulatory proteins, tetR family PF547_19305 PF01048 Phosphorylase superfamily PF547_19315 PF06574 FAD synthetase PF547_19315 PF01687 Riboflavin kinase PF547_19320 PF06827 Zinc finger found in FPG and IleRS PF547_19320 PF08264 Anticodon-binding domain of tRNA PF547_19320 PF00133 tRNA synthetases class I (I, L, M and V) PF547_19325 PF01252 Signal peptidase (SPase) II PF547_19330 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase PF547_19370 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD PF547_19375 PF07859 alpha/beta hydrolase fold PF547_19395 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family PF547_19395 PF03466 LysR substrate binding domain PF547_19400 PF01025 GrpE PF547_19405 PF00012 Hsp70 protein PF547_19425 PF13406 Transglycosylase SLT domain PF547_19430 PF02222 ATP-grasp domain PF547_19430 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain PF547_19435 PF00731 AIR carboxylase PF547_19445 PF02875 Mur ligase family, glutamate ligase domain PF547_19445 PF01225 Mur ligase family, catalytic domain PF547_19445 PF08245 Mur ligase middle domain PF547_19455 PF01569 PAP2 superfamily PF547_19460 PF03741 Integral membrane protein TerC family PF547_19470 PF03738 Glutathionylspermidine synthase preATP-grasp PF547_19475 PF00355 Rieske [2Fe-2S] domain PF547_19480 PF01979 Amidohydrolase family PF547_19485 PF00156 Phosphoribosyl transferase domain PF547_19495 PF13098 Thioredoxin-like domain PF547_19495 PF10411 Disulfide bond isomerase protein N-terminus PF547_19500 PF01545 Cation efflux family PF547_19500 PF16916 Dimerisation domain of Zinc Transporter PF547_19505 PF02583 Metal-sensitive transcriptional repressor PF547_19510 PF01926 50S ribosome-binding GTPase PF547_19510 PF12631 MnmE helical domain PF547_19510 PF10396 GTP-binding protein TrmE N-terminus PF547_19515 PF02096 60Kd inner membrane protein PF547_19515 PF14849 YidC periplasmic domain PF547_19520 PF01809 Putative membrane protein insertion efficiency factor PF547_19525 PF00825 Ribonuclease P PF547_19530 PF00468 Ribosomal protein L34 PF547_19585 PF00565 Staphylococcal nuclease homologue PF547_19590 PF00816 H-NS histone family PF547_19645 PF13614 AAA domain PF547_19650 PF02195 ParB-like nuclease domain PF547_19650 PF17762 HTH domain found in ParB protein PF547_19665 PF05816 Toxic anion resistance protein (TelA) PF547_19790 PF18272 single-stranded DNA binding TraI N-terminal subdomain PF547_19790 PF07057 DNA helicase TraI PF547_19790 PF18340 DNA relaxase TraI 2B/2B-like domain PF547_19790 PF08751 TrwC relaxase PF547_19830 PF00239 Resolvase, N terminal domain PF547_19830 PF02796 Helix-turn-helix domain of resolvase PF547_19845 PF01464 Transglycosylase SLT domain PF547_19880 PF10411 Disulfide bond isomerase protein N-terminus PF547_19880 PF13098 Thioredoxin-like domain PF547_19915 PF06834 TraU protein PF547_19925 PF06986 Type-1V conjugative transfer system mating pair stabilisation PF547_19940 PF06122 Conjugative relaxosome accessory transposon protein PF547_19960 PF13438 Domain of unknown function (DUF4113) PF547_19960 PF00817 impB/mucB/samB family PF547_19960 PF11799 impB/mucB/samB family C-terminal domain PF547_20030 PF07715 TonB-dependent Receptor Plug Domain PF547_20030 PF00593 TonB dependent receptor