locus-tag class description PF555_00005 IPR003593 AAA+ ATPase domain PF555_00005 IPR001957 Chromosomal replication control, initiator DnaA PF555_00005 IPR020591 Chromosomal replication control, initiator DnaA-like PF555_00005 IPR018312 Chromosomal replication control, initiator DnaA, conserved site PF555_00005 IPR013317 Chromosomal replication initiator protein DnaA PF555_00005 IPR013159 Chromosomal replication initiator, DnaA C-terminal PF555_00005 IPR024633 DnaA N-terminal domain PF555_00005 IPR038454 DnaA, N-terminal domain superfamily PF555_00005 IPR027417 P-loop containing nucleoside triphosphate hydrolase PF555_00005 IPR010921 Trp repressor/replication initiator PF555_00010 IPR022634 DNA polymerase III, beta sliding clamp, N-terminal PF555_00010 IPR022637 DNA polymerase III, beta sliding clamp, central PF555_00010 IPR022635 DNA polymerase III, beta sliding clamp, C-terminal PF555_00010 IPR001001 DNA polymerase III, beta sliding clamp PF555_00015 IPR001238 DNA-binding, RecF PF555_00015 IPR027417 P-loop containing nucleoside triphosphate hydrolase PF555_00015 IPR003395 RecF/RecN/SMC, N-terminal PF555_00015 IPR042174 DNA-binding RecF, domain 2 PF555_00020 IPR034160 DNA gyrase subunit B, TOPRIM domain PF555_00020 IPR006171 TOPRIM domain PF555_00020 IPR018522 DNA topoisomerase, type IIA, conserved site PF555_00020 IPR013759 DNA topoisomerase, type IIA, subunit B, C-terminal PF555_00020 IPR013760 DNA topoisomerase, type IIA-like domain superfamily PF555_00020 IPR001241 DNA topoisomerase, type IIA PF555_00020 IPR013506 DNA topoisomerase, type IIA, subunit B, domain 2 PF555_00020 IPR020568 Ribosomal protein S5 domain 2-type fold PF555_00020 IPR036890 Histidine kinase/HSP90-like ATPase superfamily PF555_00020 IPR003594 Histidine kinase/HSP90-like ATPase PF555_00020 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup PF555_00020 IPR041423 DNA gyrase subunit B insert domain PF555_00020 IPR011557 DNA gyrase, subunit B PF555_00020 IPR002288 DNA gyrase B subunit, C-terminal PF555_00030 IPR032818 DedA family PF555_00030 IPR032816 SNARE associated Golgi protein PF555_00035 IPR017871 ABC transporter, conserved site PF555_00035 IPR003439 ABC transporter-like PF555_00035 IPR032781 ABC-transporter extension domain PF555_00035 IPR027417 P-loop containing nucleoside triphosphate hydrolase PF555_00035 IPR003593 AAA+ ATPase domain PF555_00040 IPR038404 TRAP transporter solute receptor DctP superfamily PF555_00045 IPR038404 TRAP transporter solute receptor DctP superfamily PF555_00050 IPR038404 TRAP transporter solute receptor DctP superfamily PF555_00055 IPR023063 FeS cluster insertion protein ErpA PF555_00055 IPR000361 FeS cluster biogenesis PF555_00055 IPR016092 FeS cluster insertion protein PF555_00055 IPR017870 FeS cluster insertion, C-terminal, conserved site PF555_00055 IPR035903 HesB-like domain superfamily PF555_00060 IPR029058 Alpha/Beta hydrolase fold PF555_00060 IPR000073 Alpha/beta hydrolase fold-1 PF555_00060 IPR000639 Epoxide hydrolase-like PF555_00065 IPR005338 Anhydro-N-acetylmuramic acid kinase PF555_00070 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold PF555_00070 IPR036986 RNA-binding S4 domain superfamily PF555_00070 IPR024088 Tyrosine-tRNA ligase, bacterial-type PF555_00070 IPR024108 Tyrosine-tRNA ligase, bacterial-type, type 2 PF555_00070 IPR002307 Tyrosine-tRNA ligase PF555_00070 IPR002305 Aminoacyl-tRNA synthetase, class Ic PF555_00070 IPR002942 RNA-binding S4 domain PF555_00070 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site PF555_00110 IPR000175 Sodium:neurotransmitter symporter PF555_00110 IPR037272 Sodium:neurotransmitter symporter superfamily PF555_00120 IPR023267 RNA (C5-cytosine) methyltransferase PF555_00120 IPR018314 Bacterial Fmu (Sun)/eukaryotic nucleolar NOL1/Nop2p, conserved site PF555_00120 IPR001678 SAM-dependent methyltransferase RsmB/NOP2-type PF555_00120 IPR035926 NusB-like superfamily PF555_00120 IPR006027 NusB/RsmB/TIM44 PF555_00120 IPR004573 rRNA small subunit methyltransferase B PF555_00120 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase PF555_00125 IPR041711 Methionyl-tRNA formyltransferase, N-terminal domain PF555_00125 IPR011034 Formyl transferase-like, C-terminal domain superfamily PF555_00125 IPR036477 Formyl transferase, N-terminal domain superfamily PF555_00125 IPR037022 Formyl transferase, C-terminal domain superfamily PF555_00125 IPR005793 Formyl transferase, C-terminal PF555_00125 IPR002376 Formyl transferase, N-terminal PF555_00125 IPR005794 Methionyl-tRNA formyltransferase PF555_00130 IPR004404 Dihydroxy-acid dehydratase PF555_00130 IPR037237 IlvD/EDD, N-terminal domain PF555_00130 IPR020558 Dihydroxy-acid/6-phosphogluconate dehydratase, conserved site PF555_00130 IPR042096 Dihydroxy-acid dehydratase, C-terminal PF555_00130 IPR000581 Dihydroxy-acid/6-phosphogluconate dehydratase PF555_00145 IPR005119 LysR, substrate-binding PF555_00145 IPR000847 Transcription regulator HTH, LysR PF555_00145 IPR036388 Winged helix-like DNA-binding domain superfamily PF555_00145 IPR036390 Winged helix DNA-binding domain superfamily PF555_00150 IPR019918 Pyrimidine permease RutG, predicted PF555_00150 IPR006042 Xanthine/uracil permease PF555_00150 IPR006043 Xanthine/uracil/vitamin C permease PF555_00155 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain superfamily PF555_00155 IPR033129 Phosphoenolpyruvate carboxylase, His active site PF555_00155 IPR018129 Phosphoenolpyruvate carboxylase, Lys active site PF555_00155 IPR022805 Phosphoenolpyruvate carboxylase, bacterial/plant-type PF555_00155 IPR021135 Phosphoenolpyruvate carboxylase PF555_00165 IPR032874 DDE domain PF555_00165 IPR001584 Integrase, catalytic core PF555_00165 IPR012337 Ribonuclease H-like superfamily PF555_00165 IPR036397 Ribonuclease H superfamily PF555_00180 IPR025669 AAA domain PF555_00180 IPR027417 P-loop containing nucleoside triphosphate hydrolase PF555_00190 IPR002634 BolA protein PF555_00190 IPR036065 BolA-like superfamily PF555_00210 IPR039552 Transposase IS66, C-terminal PF555_00210 IPR004291 Transposase, IS66 PF555_00210 IPR024463 Transposase TnpC, homeodomain PF555_00210 IPR024474 Zinc-finger binding domain of transposase IS66 PF555_00220 IPR009057 Homeobox-like domain superfamily PF555_00230 IPR005888 dTDP-glucose 4,6-dehydratase PF555_00230 IPR020904 Short-chain dehydrogenase/reductase, conserved site PF555_00230 IPR036291 NAD(P)-binding domain superfamily PF555_00230 IPR016040 NAD(P)-binding domain PF555_00245 IPR010071 Amino acid adenylation domain PF555_00245 IPR036736 ACP-like superfamily PF555_00245 IPR001031 Thioesterase PF555_00245 IPR001242 Condensation domain PF555_00245 IPR023213 Chloramphenicol acetyltransferase-like domain superfamily PF555_00245 IPR042099 AMP-dependent synthetase-like superfamily PF555_00245 IPR000873 AMP-dependent synthetase/ligase PF555_00245 IPR009081 Phosphopantetheine binding ACP domain PF555_00245 IPR006162 Phosphopantetheine attachment site PF555_00245 IPR029058 Alpha/Beta hydrolase fold PF555_00245 IPR020806 Polyketide synthase, phosphopantetheine-binding domain PF555_00245 IPR025110 AMP-binding enzyme, C-terminal domain PF555_00245 IPR020845 AMP-binding, conserved site PF555_00250 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase PF555_00250 IPR006162 Phosphopantetheine attachment site PF555_00250 IPR001031 Thioesterase PF555_00250 IPR009081 Phosphopantetheine binding ACP domain PF555_00250 IPR020806 Polyketide synthase, phosphopantetheine-binding domain PF555_00250 IPR020807 Polyketide synthase, dehydratase domain PF555_00250 IPR020841 Polyketide synthase, beta-ketoacyl synthase domain PF555_00250 IPR032821 Ketoacyl-synthetase, C-terminal extension PF555_00250 IPR013217 Methyltransferase type 12 PF555_00250 IPR042104 Polyketide synthase, dehydratase domain superfamily PF555_00250 IPR014031 Beta-ketoacyl synthase, C-terminal PF555_00250 IPR018201 Beta-ketoacyl synthase, active site PF555_00250 IPR016039 Thiolase-like PF555_00250 IPR036736 ACP-like superfamily PF555_00250 IPR029058 Alpha/Beta hydrolase fold PF555_00250 IPR020615 Thiolase, acyl-enzyme intermediate active site PF555_00250 IPR014030 Beta-ketoacyl synthase, N-terminal PF555_00255 IPR006091 Acyl-CoA oxidase/dehydrogenase, central domain PF555_00255 IPR036250 Acyl-CoA dehydrogenase-like, C-terminal PF555_00255 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal PF555_00255 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal PF555_00255 IPR037069 Acyl-CoA dehydrogenase/oxidase, N-terminal domain superfamily PF555_00255 IPR006089 Acyl-CoA dehydrogenase, conserved site PF555_00255 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily PF555_00260 IPR042099 AMP-dependent synthetase-like superfamily PF555_00260 IPR000873 AMP-dependent synthetase/ligase PF555_00265 IPR005143 Transcription factor LuxR-like, autoinducer-binding domain PF555_00265 IPR036693 Transcription factor LuxR-like, autoinducer-binding domain superfamily PF555_00265 IPR000792 Transcription regulator LuxR, C-terminal PF555_00265 IPR036388 Winged helix-like DNA-binding domain superfamily PF555_00265 IPR016032 Signal transduction response regulator, C-terminal effector PF555_00275 IPR016181 Acyl-CoA N-acyltransferase PF555_00275 IPR001690 Autoinducer synthase PF555_00280 IPR011701 Major facilitator superfamily PF555_00280 IPR020846 Major facilitator superfamily domain PF555_00280 IPR004736 MFS transporter, metabolite:H symporter PF555_00280 IPR036259 MFS transporter superfamily PF555_00280 IPR005829 Sugar transporter, conserved site PF555_00280 IPR005828 Major facilitator, sugar transporter-like PF555_00285 IPR029045 ClpP/crotonase-like domain superfamily PF555_00285 IPR001753 Enoyl-CoA hydratase/isomerase PF555_00285 IPR014748 Enoyl-CoA hydratase, C-terminal PF555_00285 IPR018376 Enoyl-CoA hydratase/isomerase, conserved site PF555_00290 IPR001753 Enoyl-CoA hydratase/isomerase PF555_00290 IPR014748 Enoyl-CoA hydratase, C-terminal PF555_00290 IPR029045 ClpP/crotonase-like domain superfamily PF555_00290 IPR018376 Enoyl-CoA hydratase/isomerase, conserved site PF555_00295 IPR006089 Acyl-CoA dehydrogenase, conserved site PF555_00295 IPR006091 Acyl-CoA oxidase/dehydrogenase, central domain PF555_00295 IPR036250 Acyl-CoA dehydrogenase-like, C-terminal PF555_00295 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal PF555_00295 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal PF555_00295 IPR037069 Acyl-CoA dehydrogenase/oxidase, N-terminal domain superfamily PF555_00295 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily PF555_00300 IPR042099 AMP-dependent synthetase-like superfamily PF555_00300 IPR020845 AMP-binding, conserved site PF555_00300 IPR000873 AMP-dependent synthetase/ligase PF555_00300 IPR025110 AMP-binding enzyme, C-terminal domain PF555_00305 IPR002204 3-hydroxyisobutyrate dehydrogenase-related, conserved site PF555_00305 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily PF555_00305 IPR013328 6-phosphogluconate dehydrogenase, domain 2 PF555_00305 IPR006115 6-phosphogluconate dehydrogenase, NADP-binding PF555_00305 IPR011548 3-hydroxyisobutyrate dehydrogenase PF555_00305 IPR015815 3-hydroxyisobutyrate dehydrogenase-related PF555_00305 IPR036291 NAD(P)-binding domain superfamily PF555_00305 IPR029154 3-hydroxyisobutyrate dehydrogenase, NAD-binding domain PF555_00315 IPR032874 DDE domain PF555_00315 IPR001584 Integrase, catalytic core PF555_00315 IPR012337 Ribonuclease H-like superfamily PF555_00315 IPR036397 Ribonuclease H superfamily PF555_00330 IPR012725 Chaperone DnaK PF555_00330 IPR029047 Heat shock protein 70kD, peptide-binding domain superfamily PF555_00330 IPR029048 Heat shock protein 70kD, C-terminal domain superfamily PF555_00330 IPR013126 Heat shock protein 70 family PF555_00330 IPR018181 Heat shock protein 70, conserved site PF555_00335 IPR009012 GrpE nucleotide exchange factor, head PF555_00335 IPR013805 GrpE nucleotide exchange factor, coiled-coil PF555_00335 IPR000740 GrpE nucleotide exchange factor PF555_00340 IPR000847 Transcription regulator HTH, LysR PF555_00340 IPR036388 Winged helix-like DNA-binding domain superfamily PF555_00340 IPR036390 Winged helix DNA-binding domain superfamily PF555_00340 IPR005119 LysR, substrate-binding PF555_00360 IPR029058 Alpha/Beta hydrolase fold PF555_00360 IPR013094 Alpha/beta hydrolase fold-3 PF555_00365 IPR029000 Cyclophilin-like domain superfamily PF555_00365 IPR020892 Cyclophilin-type peptidyl-prolyl cis-trans isomerase, conserved site PF555_00365 IPR002130 Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain PF555_00405 IPR001179 FKBP-type peptidyl-prolyl cis-trans isomerase domain PF555_00410 IPR001872 Peptidase A8, signal peptidase II PF555_00415 IPR023585 Isoleucine-tRNA ligase, type 1 PF555_00415 IPR009008 Valyl/Leucyl/Isoleucyl-tRNA synthetase, editing domain PF555_00415 IPR009080 Aminoacyl-tRNA synthetase, class Ia, anticodon-binding PF555_00415 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold PF555_00415 IPR013155 Methionyl/Valyl/Leucyl/Isoleucyl-tRNA synthetase, anticodon-binding PF555_00415 IPR002301 Isoleucine-tRNA ligase PF555_00415 IPR033708 Isoleucyl tRNA synthetase type 1, anticodon-binding domain PF555_00415 IPR010663 Zinc finger, FPG/IleRS-type PF555_00415 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site PF555_00415 IPR002300 Aminoacyl-tRNA synthetase, class Ia PF555_00420 IPR015864 FAD synthetase PF555_00420 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold PF555_00420 IPR023468 Riboflavin kinase PF555_00420 IPR002606 Riboflavin kinase, bacterial PF555_00420 IPR015865 Riboflavin kinase domain, bacterial/eukaryotic PF555_00420 IPR023465 Riboflavin kinase domain superfamily PF555_00430 IPR000845 Nucleoside phosphorylase domain PF555_00430 IPR010049 MTA/SAH nucleosidase PF555_00430 IPR035994 Nucleoside phosphorylase superfamily PF555_00435 IPR036271 Tetracyclin repressor-like, C-terminal domain superfamily PF555_00435 IPR001647 DNA-binding HTH domain, TetR-type PF555_00435 IPR013573 Transcription regulator YcdC, C-terminal PF555_00435 IPR009057 Homeobox-like domain superfamily PF555_00435 IPR019915 Transcription regulator, pyrimidine utilisation, RutR PF555_00440 IPR017875 Aliphatic sulfonates import ATP-binding protein SsuB PF555_00440 IPR003593 AAA+ ATPase domain PF555_00440 IPR003439 ABC transporter-like PF555_00440 IPR027417 P-loop containing nucleoside triphosphate hydrolase PF555_00445 IPR000515 ABC transporter type 1, transmembrane domain MetI-like PF555_00445 IPR035906 MetI-like superfamily PF555_00450 IPR019911 Alkanesulphonate monooxygenase, FMN-dependent PF555_00450 IPR011251 Luciferase-like domain PF555_00450 IPR036661 Luciferase-like domain superfamily PF555_00455 IPR010067 Aliphatic sulfonates-binding protein PF555_00455 IPR015168 SsuA/THI5-like PF555_00455 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF PF555_00460 IPR010067 Aliphatic sulfonates-binding protein PF555_00460 IPR015168 SsuA/THI5-like PF555_00460 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF PF555_00465 IPR016181 Acyl-CoA N-acyltransferase PF555_00465 IPR036393 Acetylglutamate kinase-like superfamily PF555_00465 IPR001048 Aspartate/glutamate/uridylate kinase PF555_00465 IPR000182 GNAT domain PF555_00465 IPR033719 N-acetylglutamate synthase, kinase-like domain PF555_00465 IPR010167 Amino-acid N-acetyltransferase PF555_00480 IPR002347 Short-chain dehydrogenase/reductase SDR PF555_00480 IPR036291 NAD(P)-binding domain superfamily PF555_00480 IPR020904 Short-chain dehydrogenase/reductase, conserved site PF555_00485 IPR036412 HAD-like superfamily PF555_00485 IPR006439 HAD hydrolase, subfamily IA PF555_00485 IPR041492 Haloacid dehalogenase-like hydrolase PF555_00485 IPR023214 HAD superfamily PF555_00485 IPR023198 Phosphoglycolate phosphatase-like, domain 2 PF555_00485 IPR006346 2-phosphoglycolate phosphatase-like, prokaryotic PF555_00490 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase PF555_00490 IPR010233 Ubiquinone biosynthesis O-methyltransferase PF555_00495 IPR001853 DSBA-like thioredoxin domain PF555_00495 IPR013766 Thioredoxin domain PF555_00495 IPR017937 Thioredoxin, conserved site PF555_00495 IPR036249 Thioredoxin-like superfamily PF555_00495 IPR023205 Thiol:disulphide interchange protein DsbA/DsbL PF555_00500 IPR001647 DNA-binding HTH domain, TetR-type PF555_00500 IPR009057 Homeobox-like domain superfamily PF555_00500 IPR023772 DNA-binding HTH domain, TetR-type, conserved site PF555_00500 IPR036271 Tetracyclin repressor-like, C-terminal domain superfamily PF555_00500 IPR013571 Transcription regulator QacR, C-terminal PF555_00505 IPR023764 Transcriptional repressor HTH, FabR PF555_00505 IPR001647 DNA-binding HTH domain, TetR-type PF555_00505 IPR009057 Homeobox-like domain superfamily PF555_00510 IPR001433 Oxidoreductase FAD/NAD(P)-binding PF555_00510 IPR039261 Ferredoxin-NADP reductase (FNR), nucleotide-binding domain PF555_00510 IPR017927 FAD-binding domain, ferredoxin reductase-type PF555_00510 IPR017938 Riboflavin synthase-like beta-barrel PF555_00515 IPR005804 Fatty acid desaturase domain PF555_00520 IPR001247 Exoribonuclease, phosphorolytic domain 1 PF555_00520 IPR015847 Exoribonuclease, phosphorolytic domain 2 PF555_00520 IPR036345 Exoribonuclease, PH domain 2 superfamily PF555_00520 IPR027408 PNPase/RNase PH domain superfamily PF555_00520 IPR020568 Ribosomal protein S5 domain 2-type fold PF555_00520 IPR002381 Ribonuclease PH, bacterial-type PF555_00520 IPR018336 Ribonuclease PH, conserved site PF555_00540 IPR022412 Quinolinate phosphoribosyl transferase, N-terminal PF555_00540 IPR002638 Quinolinate phosphoribosyl transferase, C-terminal PF555_00540 IPR027277 Nicotinate-nucleotide pyrophosphorylase/Putative pyrophosphorylase ModD PF555_00540 IPR036068 Nicotinate phosphoribosyltransferase-like, C-terminal PF555_00540 IPR013785 Aldolase-type TIM barrel PF555_00540 IPR037128 Quinolinate phosphoribosyl transferase, N-terminal domain superfamily PF555_00540 IPR004393 Nicotinate-nucleotide pyrophosphorylase PF555_00545 IPR036505 N-acetylmuramoyl-L-alanine amidase/PGRP domain superfamily PF555_00545 IPR002502 N-acetylmuramoyl-L-alanine amidase domain PF555_00550 IPR004268 Peptidoglycan biosynthesis protein MurJ PF555_00555 IPR036944 Peptidyl-prolyl cis-trans isomerase, FKBP-type, N-terminal domain superfamily PF555_00555 IPR000774 Peptidyl-prolyl cis-trans isomerase, FKBP-type, N-terminal PF555_00555 IPR008104 Macrophage infectivity potentiator PF555_00555 IPR001179 FKBP-type peptidyl-prolyl cis-trans isomerase domain PF555_00560 IPR036944 Peptidyl-prolyl cis-trans isomerase, FKBP-type, N-terminal domain superfamily PF555_00560 IPR008104 Macrophage infectivity potentiator PF555_00560 IPR001179 FKBP-type peptidyl-prolyl cis-trans isomerase domain PF555_00560 IPR000774 Peptidyl-prolyl cis-trans isomerase, FKBP-type, N-terminal PF555_00565 IPR025669 AAA domain PF555_00565 IPR005702 Exopolysaccharide synthesis protein PF555_00565 IPR032807 Tyrosine kinase, G-rich domain PF555_00565 IPR003856 Polysaccharide chain length determinant N-terminal domain PF555_00565 IPR027417 P-loop containing nucleoside triphosphate hydrolase PF555_00570 IPR023485 Phosphotyrosine protein phosphatase I PF555_00570 IPR036196 Phosphotyrosine protein phosphatase I superfamily PF555_00570 IPR017867 Protein-tyrosine phosphatase, low molecular weight PF555_00575 IPR040716 Outer-membrane lipoprotein Wza, C-terminal domain PF555_00575 IPR019554 Soluble ligand binding domain PF555_00575 IPR003715 Polysaccharide export protein PF555_00580 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily PF555_00580 IPR036291 NAD(P)-binding domain superfamily PF555_00580 IPR017476 UDP-glucose/GDP-mannose dehydrogenase PF555_00580 IPR014027 UDP-glucose/GDP-mannose dehydrogenase, C-terminal PF555_00580 IPR036220 UDP-glucose/GDP-mannose dehydrogenase, C-terminal domain superfamily PF555_00580 IPR014026 UDP-glucose/GDP-mannose dehydrogenase, dimerisation PF555_00580 IPR001732 UDP-glucose/GDP-mannose dehydrogenase, N-terminal PF555_00580 IPR028359 UDP-N-acetyl-D-mannosamine/glucosamine dehydrogenase PF555_00585 IPR000683 Oxidoreductase, N-terminal PF555_00585 IPR036291 NAD(P)-binding domain superfamily PF555_00585 IPR004104 Oxidoreductase, C-terminal PF555_00590 IPR001451 Hexapeptide repeat PF555_00590 IPR011004 Trimeric LpxA-like superfamily PF555_00595 IPR000653 DegT/DnrJ/EryC1/StrS aminotransferase PF555_00595 IPR015424 Pyridoxal phosphate-dependent transferase PF555_00595 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 PF555_00595 IPR015421 Pyridoxal phosphate-dependent transferase, major domain PF555_00605 IPR024688 Maltose/galactoside acetyltransferase PF555_00605 IPR001451 Hexapeptide repeat PF555_00605 IPR039369 Galactoside O-acetyltransferase LacA-like PF555_00605 IPR011004 Trimeric LpxA-like superfamily PF555_00610 IPR017814 Mycothiol biosynthesis protein, MshA PF555_00610 IPR028098 Glycosyltransferase subfamily 4-like, N-terminal domain PF555_00610 IPR001296 Glycosyl transferase, family 1 PF555_00625 IPR001296 Glycosyl transferase, family 1 PF555_00630 IPR001173 Glycosyltransferase 2-like PF555_00630 IPR029044 Nucleotide-diphospho-sugar transferases PF555_00635 IPR003362 Bacterial sugar transferase PF555_00640 IPR005771 UTP--glucose-1-phosphate uridylyltransferase, bacterial/archaeal-type PF555_00640 IPR029044 Nucleotide-diphospho-sugar transferases PF555_00640 IPR005835 Nucleotidyl transferase domain PF555_00645 IPR036220 UDP-glucose/GDP-mannose dehydrogenase, C-terminal domain superfamily PF555_00645 IPR001732 UDP-glucose/GDP-mannose dehydrogenase, N-terminal PF555_00645 IPR014026 UDP-glucose/GDP-mannose dehydrogenase, dimerisation PF555_00645 IPR028357 UDP-glucose 6-dehydrogenase, bacterial type PF555_00645 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily PF555_00645 IPR036291 NAD(P)-binding domain superfamily PF555_00645 IPR017476 UDP-glucose/GDP-mannose dehydrogenase PF555_00645 IPR014027 UDP-glucose/GDP-mannose dehydrogenase, C-terminal PF555_00650 IPR001672 Phosphoglucose isomerase (PGI) PF555_00650 IPR023096 Phosphoglucose isomerase, C-terminal PF555_00650 IPR018189 Phosphoglucose isomerase, conserved site PF555_00650 IPR035476 Phosphoglucose isomerase, SIS domain 1 PF555_00650 IPR035482 Phosphoglucose isomerase, SIS domain 2 PF555_00655 IPR016040 NAD(P)-binding domain PF555_00655 IPR005886 UDP-glucose 4-epimerase PF555_00655 IPR036291 NAD(P)-binding domain superfamily PF555_00660 IPR016066 Alpha-D-phosphohexomutase, conserved site PF555_00660 IPR005845 Alpha-D-phosphohexomutase, alpha/beta/alpha domain II PF555_00660 IPR005846 Alpha-D-phosphohexomutase, alpha/beta/alpha domain III PF555_00660 IPR005843 Alpha-D-phosphohexomutase, C-terminal PF555_00660 IPR036900 Alpha-D-phosphohexomutase, C-terminal domain superfamily PF555_00660 IPR005841 Alpha-D-phosphohexomutase superfamily PF555_00660 IPR005844 Alpha-D-phosphohexomutase, alpha/beta/alpha domain I PF555_00660 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III PF555_00665 IPR003804 L-lactate permease PF555_00670 IPR036388 Winged helix-like DNA-binding domain superfamily PF555_00670 IPR036390 Winged helix DNA-binding domain superfamily PF555_00670 IPR000524 Transcription regulator HTH, GntR PF555_00670 IPR008920 Transcription regulator FadR/GntR, C-terminal PF555_00670 IPR011711 GntR, C-terminal PF555_00675 IPR013785 Aldolase-type TIM barrel PF555_00675 IPR020920 L-lactate dehydrogenase, bacterial PF555_00675 IPR008259 FMN-dependent alpha-hydroxy acid dehydrogenase, active site PF555_00675 IPR037396 FMN hydroxy acid dehydrogenase domain PF555_00675 IPR000262 FMN-dependent dehydrogenase PF555_00675 IPR012133 Alpha-hydroxy acid dehydrogenase, FMN-dependent PF555_00680 IPR015409 D-lactate dehydrogenase, membrane binding, C-terminal PF555_00680 IPR016164 FAD-linked oxidase-like, C-terminal PF555_00680 IPR016169 FAD-binding, type PCMH, subdomain 2 PF555_00680 IPR036318 FAD-binding, type PCMH-like superfamily PF555_00680 IPR016166 FAD-binding domain, PCMH-type PF555_00680 IPR012256 D-lactate dehydrogenase PF555_00680 IPR016173 D-lactate dehydrogenase, C-terminal subdomain 2 PF555_00680 IPR016172 D-lactate dehydrogenase, C-terminal subdomain 1 PF555_00680 IPR006094 FAD linked oxidase, N-terminal PF555_00680 IPR016167 FAD-binding, type PCMH, subdomain 1 PF555_00685 IPR015421 Pyridoxal phosphate-dependent transferase, major domain PF555_00685 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 PF555_00685 IPR000796 Aspartate/other aminotransferase PF555_00685 IPR004838 Aminotransferases, class-I, pyridoxal-phosphate-binding site PF555_00685 IPR004839 Aminotransferase, class I/classII PF555_00685 IPR015424 Pyridoxal phosphate-dependent transferase PF555_00695 IPR000485 AsnC-type HTH domain PF555_00695 IPR011711 GntR, C-terminal PF555_00695 IPR008920 Transcription regulator FadR/GntR, C-terminal PF555_00695 IPR000524 Transcription regulator HTH, GntR PF555_00695 IPR036388 Winged helix-like DNA-binding domain superfamily PF555_00695 IPR036390 Winged helix DNA-binding domain superfamily PF555_00700 IPR040442 Pyruvate kinase-like domain superfamily PF555_00700 IPR012695 2-methylisocitrate lyase PF555_00700 IPR018523 Isocitrate lyase/phosphorylmutase, conserved site PF555_00700 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain superfamily PF555_00700 IPR039556 ICL/PEPM domain PF555_00705 IPR011278 2-methylcitrate synthase/citrate synthase type I PF555_00705 IPR016142 Citrate synthase-like, large alpha subdomain PF555_00705 IPR016143 Citrate synthase-like, small alpha subdomain PF555_00705 IPR002020 Citrate synthase PF555_00705 IPR019810 Citrate synthase active site PF555_00705 IPR024176 Citrate synthase, bacterial-type PF555_00705 IPR036969 Citrate synthase superfamily PF555_00710 IPR000573 Aconitase A/isopropylmalate dehydratase small subunit, swivel domain PF555_00710 IPR036008 Aconitase, iron-sulfur domain PF555_00710 IPR015931 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha, subdomain 1/3 PF555_00710 IPR015928 Aconitase/3-isopropylmalate dehydratase, swivel PF555_00710 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain PF555_00710 IPR012708 2-methylisocitrate dehydratase AcnD, Fe/S-dependent PF555_00710 IPR006249 Aconitase/Iron-responsive element-binding protein 2 PF555_00740 IPR016039 Thiolase-like PF555_00740 IPR020841 Polyketide synthase, beta-ketoacyl synthase domain PF555_00740 IPR000794 Beta-ketoacyl synthase PF555_00740 IPR014031 Beta-ketoacyl synthase, C-terminal PF555_00740 IPR018201 Beta-ketoacyl synthase, active site PF555_00740 IPR014030 Beta-ketoacyl synthase, N-terminal PF555_00750 IPR018769 Domain of unknown function DUF2345, Vgr C-terminal PF555_00750 IPR006531 Gp5 N-terminal PF555_00750 IPR028244 Putative type VI secretion system, Rhs element associated Vgr domain PF555_00750 IPR017847 Type VI secretion system, RhsGE-associated Vgr family subset PF555_00750 IPR006533 Type VI secretion system, RhsGE-associated Vgr protein PF555_00750 IPR037026 Vgr protein, OB-fold domain superfamily PF555_00780 IPR020103 Pseudouridine synthase, catalytic domain superfamily PF555_00780 IPR006145 Pseudouridine synthase, RsuA/RluA PF555_00780 IPR006224 Pseudouridine synthase, RluC/RluD, conserved site PF555_00780 IPR006225 Pseudouridine synthase, RluC/RluD PF555_00795 IPR010105 TonB-dependent siderophore receptor PF555_00795 IPR037066 TonB-dependent receptor, plug domain superfamily PF555_00795 IPR036942 TonB-dependent receptor-like, beta-barrel domain superfamily PF555_00795 IPR000531 TonB-dependent receptor-like, beta-barrel PF555_00795 IPR039423 TonB-dependent receptor-like PF555_00795 IPR012910 TonB-dependent receptor, plug domain PF555_00805 IPR019887 Transcription regulator AsnC/Lrp, ligand binding domain PF555_00805 IPR019885 Transcription regulator HTH, AsnC-type, conserved site PF555_00805 IPR011008 Dimeric alpha-beta barrel PF555_00805 IPR036390 Winged helix DNA-binding domain superfamily PF555_00805 IPR000485 AsnC-type HTH domain PF555_00805 IPR011991 ArsR-like helix-turn-helix domain PF555_00805 IPR019888 Transcription regulator AsnC-type PF555_00805 IPR036388 Winged helix-like DNA-binding domain superfamily PF555_00810 IPR023080 D-amino acid dehydrogenase DadA PF555_00810 IPR006076 FAD dependent oxidoreductase PF555_00810 IPR036188 FAD/NAD(P)-binding domain superfamily PF555_00815 IPR011079 Alanine racemase, C-terminal PF555_00815 IPR020622 Alanine racemase, pyridoxal-phosphate attachment site PF555_00815 IPR001608 Alanine racemase, N-terminal PF555_00815 IPR009006 Alanine racemase/group IV decarboxylase, C-terminal PF555_00815 IPR000821 Alanine racemase PF555_00815 IPR029066 PLP-binding barrel PF555_00820 IPR019897 RidA, conserved site PF555_00820 IPR035959 RutC-like superfamily PF555_00820 IPR006175 YjgF/YER057c/UK114 family PF555_00820 IPR035709 RutC family, YoaB-like PF555_00830 IPR001584 Integrase, catalytic core PF555_00830 IPR032874 DDE domain PF555_00830 IPR012337 Ribonuclease H-like superfamily PF555_00830 IPR036397 Ribonuclease H superfamily PF555_00835 IPR023636 Urocanase conserved site PF555_00835 IPR023637 Urocanase PF555_00835 IPR035401 Urocanase, C-terminal domain PF555_00835 IPR038364 Urocanase, central domain superfamily PF555_00835 IPR035400 Urocanase, N-terminal domain PF555_00835 IPR035085 Urocanase, Rossmann-like domain PF555_00835 IPR036190 Urocanase superfamily PF555_00840 IPR001106 Aromatic amino acid lyase PF555_00840 IPR024083 Fumarase/histidase, N-terminal PF555_00840 IPR005921 Histidine ammonia-lyase PF555_00840 IPR022313 Phenylalanine/histidine ammonia-lyases, active site PF555_00840 IPR008948 L-Aspartase-like PF555_00845 IPR004840 Amino acid permease, conserved site PF555_00845 IPR004841 Amino acid permease/ SLC12A domain PF555_00850 IPR032466 Metal-dependent hydrolase PF555_00850 IPR011059 Metal-dependent hydrolase, composite domain superfamily PF555_00850 IPR005920 Imidazolonepropionase PF555_00850 IPR006680 Amidohydrolase-related PF555_00855 IPR023696 Ureohydrolase domain superfamily PF555_00855 IPR020855 Ureohydrolase, manganese-binding site PF555_00855 IPR005923 Formiminoglutamase PF555_00855 IPR006035 Ureohydrolase PF555_00870 IPR004391 Glutamate racemase PF555_00870 IPR015942 Asp/Glu/hydantoin racemase PF555_00870 IPR033134 Asp/Glu racemase, active site 2 PF555_00870 IPR018187 Asp/Glu racemase, active site 1 PF555_00870 IPR001920 Asp/Glu racemase PF555_00875 IPR035466 GlmS/AgaS, SIS domain 1 PF555_00875 IPR017932 Glutamine amidotransferase type 2 domain PF555_00875 IPR005855 Glucosamine-fructose-6-phosphate aminotransferase, isomerising PF555_00875 IPR029055 Nucleophile aminohydrolases, N-terminal PF555_00875 IPR001347 Sugar isomerase (SIS) PF555_00875 IPR035490 GlmS/FrlB, SIS domain 2 PF555_00880 IPR029044 Nucleotide-diphospho-sugar transferases PF555_00880 IPR025877 MobA-like NTP transferase PF555_00880 IPR018357 Hexapeptide transferase, conserved site PF555_00880 IPR001451 Hexapeptide repeat PF555_00880 IPR038009 GlmU, C-terminal LbH domain PF555_00880 IPR005882 Bifunctional UDP-N-acetylglucosamine pyrophosphorylase/glucosamine-1-phosphate N-acetyltransferase PF555_00880 IPR011004 Trimeric LpxA-like superfamily PF555_00885 IPR036681 PgpA-like superfamily PF555_00885 IPR007686 YutG/PgpA domain PF555_00885 IPR026037 Phosphatidylglycerophosphatase A PF555_00890 IPR016188 PurM-like, N-terminal domain PF555_00890 IPR036676 PurM-like, C-terminal domain superfamily PF555_00890 IPR006283 Thiamine-monophosphate kinase PF555_00890 IPR010918 PurM-like, C-terminal domain PF555_00890 IPR036921 PurM-like, N-terminal domain superfamily PF555_00895 IPR011605 NusB antitermination factor PF555_00895 IPR035926 NusB-like superfamily PF555_00895 IPR006027 NusB/RsmB/TIM44 PF555_00900 IPR036467 Lumazine/riboflavin synthase superfamily PF555_00900 IPR002180 Lumazine/riboflavin synthase PF555_00900 IPR034964 Lumazine synthase PF555_00905 IPR032677 GTP cyclohydrolase II PF555_00905 IPR000422 3,4-dihydroxy-2-butanone 4-phosphate synthase, RibB PF555_00905 IPR017945 DHBP synthase RibB-like alpha/beta domain superfamily PF555_00905 IPR036144 RibA-like superfamily PF555_00915 IPR002912 ACT domain PF555_00915 IPR036412 HAD-like superfamily PF555_00915 IPR023190 Phosphoserine phosphatase, domain 2 PF555_00915 IPR023214 HAD superfamily PF555_00930 IPR003732 D-aminoacyl-tRNA deacylase DTD PF555_00930 IPR023509 D-aminoacyl-tRNA deacylase-like superfamily PF555_00935 IPR007229 Nicotinate phosphoribosyltransferase family PF555_00935 IPR041525 Nicotinate/nicotinamide phosphoribosyltransferase PF555_00935 IPR040727 Nicotinate phosphoribosyltransferase, N-terminal domain PF555_00935 IPR006406 Nicotinate phosphoribosyltransferase PF555_00935 IPR036068 Nicotinate phosphoribosyltransferase-like, C-terminal PF555_00940 IPR001307 Thiosulphate sulfurtransferase, conserved site PF555_00940 IPR001763 Rhodanese-like domain PF555_00940 IPR036873 Rhodanese-like domain superfamily PF555_00945 IPR033177 Phosphatidylserine decarboxylase PF555_00945 IPR033178 Phosphatidylserine decarboxylase, prokaryotic type 1 PF555_00945 IPR003817 Phosphatidylserine decarboxylase-related PF555_00955 IPR014310 Signal transduction histidine kinase, phosphate regulon sensor PhoR PF555_00955 IPR036890 Histidine kinase/HSP90-like ATPase superfamily PF555_00955 IPR021766 Phosphate regulon sensor protein PhoR PF555_00955 IPR003594 Histidine kinase/HSP90-like ATPase PF555_00955 IPR005467 Histidine kinase domain PF555_00955 IPR013767 PAS fold PF555_00955 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain PF555_00955 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily PF555_00955 IPR000014 PAS domain PF555_00955 IPR035965 PAS domain superfamily PF555_00955 IPR004358 Signal transduction histidine kinase-related protein, C-terminal PF555_00960 IPR016032 Signal transduction response regulator, C-terminal effector PF555_00960 IPR036388 Winged helix-like DNA-binding domain superfamily PF555_00960 IPR039420 Transcriptional regulatory protein WalR-like PF555_00960 IPR001789 Signal transduction response regulator, receiver domain PF555_00960 IPR011879 Signal transduction response regulator, phosphate regulon transcriptional regulatory protein PhoB PF555_00960 IPR001867 OmpR/PhoB-type DNA-binding domain PF555_00960 IPR011006 CheY-like superfamily PF555_00970 IPR002347 Short-chain dehydrogenase/reductase SDR PF555_00970 IPR036291 NAD(P)-binding domain superfamily PF555_00970 IPR020904 Short-chain dehydrogenase/reductase, conserved site PF555_00975 IPR002528 Multi antimicrobial extrusion protein PF555_00980 IPR015424 Pyridoxal phosphate-dependent transferase PF555_00980 IPR015421 Pyridoxal phosphate-dependent transferase, major domain PF555_00980 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 PF555_00980 IPR004839 Aminotransferase, class I/classII PF555_00985 IPR007383 Protein of unknown function DUF445 PF555_01000 IPR007370 Glutamate--cysteine ligase PF555_01000 IPR014746 Glutamine synthetase/guanido kinase, catalytic domain PF555_01000 IPR006334 Glutamate--cysteine ligase, monofunctional PF555_01005 IPR003752 Disulphide bond formation protein DsbB/BdbC PF555_01005 IPR022920 Disulphide bond formation protein DsbB PF555_01005 IPR023380 DsbB-like superfamily PF555_01010 IPR006533 Type VI secretion system, RhsGE-associated Vgr protein PF555_01010 IPR028244 Putative type VI secretion system, Rhs element associated Vgr domain PF555_01010 IPR006531 Gp5 N-terminal PF555_01010 IPR018769 Domain of unknown function DUF2345, Vgr C-terminal PF555_01010 IPR037026 Vgr protein, OB-fold domain superfamily PF555_01010 IPR017847 Type VI secretion system, RhsGE-associated Vgr family subset PF555_01015 IPR023346 Lysozyme-like domain superfamily PF555_01015 IPR000726 Glycoside hydrolase, family 19, catalytic PF555_01030 IPR029058 Alpha/Beta hydrolase fold PF555_01030 IPR008886 Uncharacterised protein family UPF0227/Esterase YqiA PF555_01035 IPR005737 DNA topoisomerase IV, subunit B, Gram-negative PF555_01035 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup PF555_01035 IPR001241 DNA topoisomerase, type IIA PF555_01035 IPR013760 DNA topoisomerase, type IIA-like domain superfamily PF555_01035 IPR036890 Histidine kinase/HSP90-like ATPase superfamily PF555_01035 IPR013759 DNA topoisomerase, type IIA, subunit B, C-terminal PF555_01035 IPR002288 DNA gyrase B subunit, C-terminal PF555_01035 IPR018522 DNA topoisomerase, type IIA, conserved site PF555_01035 IPR020568 Ribosomal protein S5 domain 2-type fold PF555_01035 IPR003594 Histidine kinase/HSP90-like ATPase PF555_01035 IPR013506 DNA topoisomerase, type IIA, subunit B, domain 2 PF555_01035 IPR006171 TOPRIM domain PF555_01040 IPR024060 Ureidoglycolate lyase domain superfamily PF555_01040 IPR023525 Ureidoglycolate lyase, bacterial PF555_01040 IPR007247 Ureidoglycolate lyase PF555_01040 IPR011051 RmlC-like cupin domain superfamily PF555_01045 IPR008979 Galactose-binding-like domain superfamily PF555_01045 IPR015908 Allantoicase domain PF555_01045 IPR005164 Allantoicase PF555_01050 IPR002938 FAD-binding domain PF555_01050 IPR036188 FAD/NAD(P)-binding domain superfamily PF555_01060 IPR017588 Uric acid permease UacT-like PF555_01060 IPR006042 Xanthine/uracil permease PF555_01060 IPR006043 Xanthine/uracil/vitamin C permease PF555_01065 IPR023419 Transthyretin, conserved site PF555_01065 IPR014306 Hydroxyisourate hydrolase PF555_01065 IPR023418 Transthyretin, thyroxine binding site PF555_01065 IPR023416 Transthyretin/hydroxyisourate hydrolase domain PF555_01065 IPR036817 Transthyretin/hydroxyisourate hydrolase domain superfamily PF555_01095 IPR003834 Cytochrome C biogenesis protein, transmembrane domain PF555_01095 IPR035671 DsbD gamma PF555_01095 IPR028250 Thiol:disulfide interchange protein DsbD, N-terminal domain PF555_01095 IPR036929 Thiol:disulfide interchange protein DsbD, N-terminal domain superfamily PF555_01095 IPR022910 Thiol:disulphide interchange protein DsbD PF555_01095 IPR036249 Thioredoxin-like superfamily PF555_01095 IPR013766 Thioredoxin domain PF555_01095 IPR017937 Thioredoxin, conserved site PF555_01100 IPR011620 Signal transduction histidine kinase, 5TM receptor LytS, transmembrane region PF555_01100 IPR029787 Nucleotide cyclase PF555_01100 IPR000160 GGDEF domain PF555_01105 IPR033140 Lipase, GDXG, putative serine active site PF555_01105 IPR002168 Lipase, GDXG, putative histidine active site PF555_01105 IPR013094 Alpha/beta hydrolase fold-3 PF555_01105 IPR029058 Alpha/Beta hydrolase fold PF555_01115 IPR036249 Thioredoxin-like superfamily PF555_01115 IPR006660 Arsenate reductase-like PF555_01115 IPR006504 Transcriptional regulator Spx/MgsR PF555_01120 IPR020847 AP endonuclease 1, binding site PF555_01120 IPR004808 AP endonuclease 1 PF555_01120 IPR020848 AP endonuclease 1, conserved site PF555_01120 IPR036691 Endonuclease/exonuclease/phosphatase superfamily PF555_01120 IPR005135 Endonuclease/exonuclease/phosphatase PF555_01125 IPR023031 Orotate phosphoribosyltransferase PF555_01125 IPR004467 Orotate phosphoribosyl transferase domain PF555_01125 IPR000836 Phosphoribosyltransferase domain PF555_01125 IPR029057 Phosphoribosyltransferase-like PF555_01135 IPR036942 TonB-dependent receptor-like, beta-barrel domain superfamily PF555_01135 IPR037066 TonB-dependent receptor, plug domain superfamily PF555_01135 IPR012910 TonB-dependent receptor, plug domain PF555_01135 IPR010105 TonB-dependent siderophore receptor PF555_01135 IPR039423 TonB-dependent receptor-like PF555_01135 IPR000531 TonB-dependent receptor-like, beta-barrel PF555_01145 IPR006284 Glutathione synthetase, prokaryotic PF555_01145 IPR013815 ATP-grasp fold, subdomain 1 PF555_01145 IPR004218 Prokaryotic glutathione synthetase, ATP-binding PF555_01145 IPR011761 ATP-grasp fold PF555_01145 IPR004215 Prokaryotic glutathione synthetase, N-terminal PF555_01145 IPR016185 Pre-ATP-grasp domain superfamily PF555_01150 IPR006009 N-acetylglucosaminyltransferase, MurG PF555_01150 IPR007235 Glycosyl transferase, family 28, C-terminal PF555_01150 IPR004276 Glycosyltransferase family 28, N-terminal domain PF555_01155 IPR036565 Mur-like, catalytic domain superfamily PF555_01155 IPR004101 Mur ligase, C-terminal PF555_01155 IPR036615 Mur ligase, C-terminal domain superfamily PF555_01155 IPR005758 UDP-N-acetylmuramate--L-alanine ligase PF555_01155 IPR000713 Mur ligase, N-terminal catalytic domain PF555_01155 IPR013221 Mur ligase, central PF555_01160 IPR011095 D-alanine--D-alanine ligase, C-terminal PF555_01160 IPR011127 D-alanine--D-alanine ligase, N-terminal domain PF555_01160 IPR011761 ATP-grasp fold PF555_01160 IPR016185 Pre-ATP-grasp domain superfamily PF555_01160 IPR005905 D-alanine--D-alanine ligase PF555_01160 IPR000291 D-alanine--D-alanine ligase/VANA/B/C, conserved site PF555_01160 IPR013815 ATP-grasp fold, subdomain 1 PF555_01165 IPR013685 POTRA domain, FtsQ-type PF555_01165 IPR034746 POTRA domain PF555_01165 IPR026579 Cell division protein FtsQ PF555_01165 IPR005548 Cell division protein FtsQ/DivIB PF555_01170 IPR003494 SHS2 domain inserted in FtsA PF555_01170 IPR020823 Cell division protein FtsA PF555_01175 IPR024757 Cell division protein FtsZ, C-terminal PF555_01175 IPR008280 Tubulin/FtsZ, C-terminal PF555_01175 IPR018316 Tubulin/FtsZ, 2-layer sandwich domain PF555_01175 IPR036525 Tubulin/FtsZ, GTPase domain superfamily PF555_01175 IPR003008 Tubulin/FtsZ, GTPase domain PF555_01175 IPR000158 Cell division protein FtsZ PF555_01175 IPR020805 Cell division protein FtsZ, conserved site PF555_01180 IPR015870 UDP-3-O-acyl N-acetylglucosamine deacetylase, N-terminal PF555_01180 IPR020568 Ribosomal protein S5 domain 2-type fold PF555_01180 IPR004463 UDP-3-O-acyl N-acetylglucosamine deacetylase PF555_01180 IPR011334 UDP-3-O-acyl N-acetylglucosamine deacetylase, C-terminal PF555_01190 IPR016047 Peptidase M23 PF555_01190 IPR011055 Duplicated hybrid motif PF555_01195 IPR035807 Pyruvate dehydrogenase E1 component, N-terminal PF555_01195 IPR004660 Pyruvate dehydrogenase E1 component PF555_01195 IPR041621 Pyruvate dehydrogenase E1 component, middle domain PF555_01195 IPR029061 Thiamin diphosphate-binding fold PF555_01195 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II PF555_01195 IPR005474 Transketolase, N-terminal PF555_01200 IPR011053 Single hybrid motif PF555_01200 IPR004167 Peripheral subunit-binding domain PF555_01200 IPR036625 E3-binding domain superfamily PF555_01200 IPR000089 Biotin/lipoyl attachment PF555_01200 IPR006256 Dihydrolipoamide acetyltransferase pyruvate dehydrogenase complex PF555_01200 IPR001078 2-oxoacid dehydrogenase acyltransferase, catalytic domain PF555_01200 IPR003016 2-oxo acid dehydrogenase, lipoyl-binding site PF555_01200 IPR023213 Chloramphenicol acetyltransferase-like domain superfamily PF555_01210 IPR001727 Gdt1 family PF555_01215 IPR012910 TonB-dependent receptor, plug domain PF555_01215 IPR037066 TonB-dependent receptor, plug domain superfamily PF555_01215 IPR039423 TonB-dependent receptor-like PF555_01215 IPR000531 TonB-dependent receptor-like, beta-barrel PF555_01215 IPR010916 TonB box, conserved site PF555_01215 IPR036942 TonB-dependent receptor-like, beta-barrel domain superfamily PF555_01215 IPR010917 TonB-dependent receptor, conserved site PF555_01215 IPR010105 TonB-dependent siderophore receptor PF555_01220 IPR002563 Flavin reductase like domain PF555_01220 IPR001226 Flavodoxin, conserved site PF555_01220 IPR029039 Flavoprotein-like superfamily PF555_01220 IPR001279 Metallo-beta-lactamase PF555_01220 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like PF555_01220 IPR012349 FMN-binding split barrel PF555_01220 IPR008254 Flavodoxin/nitric oxide synthase PF555_01225 IPR005358 Putative zinc- or iron-chelating domain containing protein PF555_01230 IPR013785 Aldolase-type TIM barrel PF555_01230 IPR000644 CBS domain PF555_01230 IPR005990 Inosine-5'-monophosphate dehydrogenase PF555_01230 IPR015875 IMP dehydrogenase / GMP reductase, conserved site PF555_01230 IPR001093 IMP dehydrogenase/GMP reductase PF555_01235 IPR006352 Phosphoglucosamine mutase, bacterial type PF555_01235 IPR005841 Alpha-D-phosphohexomutase superfamily PF555_01235 IPR016066 Alpha-D-phosphohexomutase, conserved site PF555_01235 IPR036900 Alpha-D-phosphohexomutase, C-terminal domain superfamily PF555_01235 IPR005845 Alpha-D-phosphohexomutase, alpha/beta/alpha domain II PF555_01235 IPR005846 Alpha-D-phosphohexomutase, alpha/beta/alpha domain III PF555_01235 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III PF555_01235 IPR005844 Alpha-D-phosphohexomutase, alpha/beta/alpha domain I PF555_01235 IPR005843 Alpha-D-phosphohexomutase, C-terminal PF555_01240 IPR000659 Pyridoxamine 5'-phosphate oxidase PF555_01240 IPR019740 Pyridoxamine 5'-phosphate oxidase, conserved site PF555_01240 IPR011576 Pyridoxamine 5'-phosphate oxidase, putative PF555_01240 IPR019576 Pyridoxine 5'-phosphate oxidase, dimerisation, C-terminal PF555_01240 IPR012349 FMN-binding split barrel PF555_01245 IPR041122 RecJ, OB domain PF555_01245 IPR004610 Bacterial RecJ exonuclease PF555_01245 IPR038763 DHH phosphoesterase superfamily PF555_01245 IPR003156 DHHA1 domain PF555_01245 IPR001667 DDH domain PF555_01270 IPR013785 Aldolase-type TIM barrel PF555_01270 IPR001155 NADH:flavin oxidoreductase/NADH oxidase, N-terminal PF555_01275 IPR007507 3-deoxy-D-manno-octulosonic-acid transferase, N-terminal PF555_01275 IPR038107 3-deoxy-D-manno-octulosonic-acid transferase, N-terminal domain superfamily PF555_01275 IPR039901 3-deoxy-D-manno-octulosonic acid transferase PF555_01280 IPR029026 tRNA (guanine-N1-)-methyltransferase, N-terminal PF555_01280 IPR029028 Alpha/beta knot methyltransferases PF555_01280 IPR006700 Ribosomal RNA small subunit methyltransferase E PF555_01285 IPR010920 LSM domain superfamily PF555_01285 IPR006685 Mechanosensitive ion channel MscS PF555_01285 IPR011066 Mechanosensitive ion channel MscS, C-terminal PF555_01285 IPR006686 Mechanosensitive ion channel MscS, conserved site PF555_01285 IPR011014 Mechanosensitive ion channel MscS, transmembrane-2 PF555_01285 IPR023408 Mechanosensitive ion channel MscS domain superfamily PF555_01295 IPR042099 AMP-dependent synthetase-like superfamily PF555_01295 IPR000873 AMP-dependent synthetase/ligase PF555_01295 IPR020845 AMP-binding, conserved site PF555_01295 IPR025110 AMP-binding enzyme, C-terminal domain PF555_01295 IPR032387 Acetyl-coenzyme A synthetase, N-terminal domain PF555_01295 IPR011904 Acetate-CoA ligase PF555_01300 IPR000868 Isochorismatase-like PF555_01300 IPR036380 Isochorismatase-like superfamily PF555_01305 IPR000485 AsnC-type HTH domain PF555_01305 IPR011008 Dimeric alpha-beta barrel PF555_01305 IPR019888 Transcription regulator AsnC-type PF555_01305 IPR019887 Transcription regulator AsnC/Lrp, ligand binding domain PF555_01305 IPR036388 Winged helix-like DNA-binding domain superfamily PF555_01305 IPR036390 Winged helix DNA-binding domain superfamily PF555_01310 IPR036661 Luciferase-like domain superfamily PF555_01310 IPR024014 FMNH(2)-dependent dimethylsulfone monooxygenase SfnG PF555_01310 IPR011251 Luciferase-like domain PF555_01315 IPR029039 Flavoprotein-like superfamily PF555_01315 IPR005025 NADPH-dependent FMN reductase-like PF555_01315 IPR019912 FMN reductase, MsuE-like PF555_01320 IPR011006 CheY-like superfamily PF555_01320 IPR016032 Signal transduction response regulator, C-terminal effector PF555_01320 IPR001789 Signal transduction response regulator, receiver domain PF555_01320 IPR000792 Transcription regulator LuxR, C-terminal PF555_01330 IPR038188 TorS, sensor domain superfamily PF555_01330 IPR001789 Signal transduction response regulator, receiver domain PF555_01330 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain PF555_01330 IPR004358 Signal transduction histidine kinase-related protein, C-terminal PF555_01330 IPR036641 HPT domain superfamily PF555_01330 IPR037952 Sensor histidine kinase TorS, sensor domain PF555_01330 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain PF555_01330 IPR005467 Histidine kinase domain PF555_01330 IPR036890 Histidine kinase/HSP90-like ATPase superfamily PF555_01330 IPR003594 Histidine kinase/HSP90-like ATPase PF555_01330 IPR003660 HAMP domain PF555_01330 IPR011006 CheY-like superfamily PF555_01330 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily PF555_01335 IPR007436 Protein of unknown function DUF485 PF555_01340 IPR014083 Cation/acetate symporter ActP PF555_01340 IPR038377 Sodium/glucose symporter superfamily PF555_01340 IPR001734 Sodium/solute symporter PF555_01340 IPR018212 Sodium/solute symporter, conserved site PF555_01350 IPR018093 BCCT transporter, conserved site PF555_01350 IPR000060 BCCT transporter family PF555_01360 IPR000160 GGDEF domain PF555_01360 IPR029787 Nucleotide cyclase PF555_01365 IPR003439 ABC transporter-like PF555_01365 IPR017871 ABC transporter, conserved site PF555_01365 IPR027417 P-loop containing nucleoside triphosphate hydrolase PF555_01365 IPR004602 UvrABC system subunit A PF555_01365 IPR041552 UvrA DNA-binding domain PF555_01365 IPR041102 UvrA, interaction domain PF555_01370 IPR036271 Tetracyclin repressor-like, C-terminal domain superfamily PF555_01370 IPR011075 Tetracyclin repressor-like, C-terminal domain PF555_01370 IPR009057 Homeobox-like domain superfamily PF555_01370 IPR001647 DNA-binding HTH domain, TetR-type PF555_01375 IPR013149 Alcohol dehydrogenase, C-terminal PF555_01375 IPR013154 Alcohol dehydrogenase, N-terminal PF555_01375 IPR011032 GroES-like superfamily PF555_01375 IPR036291 NAD(P)-binding domain superfamily PF555_01375 IPR020843 Polyketide synthase, enoylreductase domain PF555_01375 IPR002364 Quinone oxidoreductase/zeta-crystallin, conserved site PF555_01385 IPR009707 Membrane protein GlpM/YdgC PF555_01390 IPR034291 Thiamine phosphate synthase PF555_01390 IPR022998 Thiamine phosphate synthase/TenI PF555_01390 IPR036206 Thiamin phosphate synthase superfamily PF555_01390 IPR004305 Thiaminase-2/PQQC PF555_01390 IPR029056 Ribokinase-like PF555_01390 IPR004399 Hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase PF555_01390 IPR016084 Haem oxygenase-like, multi-helical PF555_01390 IPR013785 Aldolase-type TIM barrel PF555_01390 IPR013749 Pyridoxamine kinase/Phosphomethylpyrimidine kinase PF555_01400 IPR011701 Major facilitator superfamily PF555_01400 IPR020846 Major facilitator superfamily domain PF555_01400 IPR036259 MFS transporter superfamily PF555_01405 IPR012340 Nucleic acid-binding, OB-fold PF555_01405 IPR000424 Primosome PriB/single-strand DNA-binding PF555_01405 IPR011344 Single-stranded DNA-binding protein PF555_01415 IPR004471 Branched-chain amino acid transport, AzlC PF555_01415 IPR011606 Branched-chain amino acid transport, permease PF555_01425 IPR004841 Amino acid permease/ SLC12A domain PF555_01425 IPR011265 GABA permease PF555_01425 IPR004840 Amino acid permease, conserved site PF555_01430 IPR036390 Winged helix DNA-binding domain superfamily PF555_01430 IPR000524 Transcription regulator HTH, GntR PF555_01430 IPR036388 Winged helix-like DNA-binding domain superfamily PF555_01430 IPR015424 Pyridoxal phosphate-dependent transferase PF555_01430 IPR015421 Pyridoxal phosphate-dependent transferase, major domain PF555_01430 IPR004839 Aminotransferase, class I/classII PF555_01435 IPR015424 Pyridoxal phosphate-dependent transferase PF555_01435 IPR005814 Aminotransferase class-III PF555_01435 IPR004632 4-aminobutyrate aminotransferase, bacterial PF555_01435 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 PF555_01435 IPR015421 Pyridoxal phosphate-dependent transferase, major domain PF555_01440 IPR016161 Aldehyde/histidinol dehydrogenase PF555_01440 IPR016163 Aldehyde dehydrogenase, C-terminal PF555_01440 IPR016160 Aldehyde dehydrogenase, cysteine active site PF555_01440 IPR029510 Aldehyde dehydrogenase, glutamic acid active site PF555_01440 IPR016162 Aldehyde dehydrogenase, N-terminal PF555_01440 IPR015590 Aldehyde dehydrogenase domain PF555_01440 IPR010102 Succinate semialdehyde dehydrogenase PF555_01445 IPR000847 Transcription regulator HTH, LysR PF555_01445 IPR036388 Winged helix-like DNA-binding domain superfamily PF555_01445 IPR036390 Winged helix DNA-binding domain superfamily PF555_01450 IPR000868 Isochorismatase-like PF555_01450 IPR036380 Isochorismatase-like superfamily PF555_01455 IPR011051 RmlC-like cupin domain superfamily PF555_01455 IPR003829 Pirin, N-terminal domain PF555_01455 IPR012093 Pirin PF555_01455 IPR014710 RmlC-like jelly roll fold PF555_01455 IPR008778 Pirin, C-terminal domain PF555_01465 IPR002937 Amine oxidase PF555_01465 IPR014105 Carotenoid/retinoid oxidoreductase PF555_01465 IPR036188 FAD/NAD(P)-binding domain superfamily PF555_01485 IPR011701 Major facilitator superfamily PF555_01485 IPR020846 Major facilitator superfamily domain PF555_01485 IPR036259 MFS transporter superfamily PF555_01485 IPR005829 Sugar transporter, conserved site PF555_01490 IPR005119 LysR, substrate-binding PF555_01490 IPR000847 Transcription regulator HTH, LysR PF555_01490 IPR036388 Winged helix-like DNA-binding domain superfamily PF555_01490 IPR036390 Winged helix DNA-binding domain superfamily PF555_01510 IPR036812 NADP-dependent oxidoreductase domain superfamily PF555_01510 IPR018170 Aldo/keto reductase, conserved site PF555_01510 IPR020471 Aldo/keto reductase PF555_01510 IPR023210 NADP-dependent oxidoreductase domain PF555_01515 IPR037923 Transcription regulator HTH-like PF555_01515 IPR003313 AraC-type arabinose-binding/dimerisation domain PF555_01515 IPR020449 Transcription regulator HTH, AraC- type PF555_01515 IPR023699 Transcription activator HTH, RhaR PF555_01515 IPR009057 Homeobox-like domain superfamily PF555_01515 IPR018062 HTH domain AraC-type, conserved site PF555_01515 IPR018060 DNA binding HTH domain, AraC-type PF555_01515 IPR014710 RmlC-like jelly roll fold PF555_01540 IPR011991 ArsR-like helix-turn-helix domain PF555_01540 IPR002577 Helix-turn-helix, HxlR type PF555_01540 IPR036390 Winged helix DNA-binding domain superfamily PF555_01540 IPR036388 Winged helix-like DNA-binding domain superfamily PF555_01545 IPR003680 Flavodoxin-like fold PF555_01545 IPR029039 Flavoprotein-like superfamily PF555_01560 IPR003855 Potassium transporter PF555_01560 IPR023051 Potassium uptake protein, low affinity, Kup PF555_01585 IPR022357 Major intrinsic protein, conserved site PF555_01585 IPR023743 Aquaporin Z PF555_01585 IPR034294 Aquaporin transporter PF555_01585 IPR000425 Major intrinsic protein PF555_01585 IPR023271 Aquaporin-like PF555_01600 IPR013785 Aldolase-type TIM barrel PF555_01600 IPR006062 Histidine biosynthesis PF555_01600 IPR004651 Histidine biosynthesis, HisF PF555_01600 IPR011060 Ribulose-phosphate binding barrel PF555_01605 IPR002575 Aminoglycoside phosphotransferase PF555_01605 IPR005280 Homoserine kinase, type II PF555_01605 IPR011009 Protein kinase-like domain superfamily PF555_01640 IPR013785 Aldolase-type TIM barrel PF555_01640 IPR006062 Histidine biosynthesis PF555_01640 IPR006063 Phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase HisA PF555_01640 IPR023016 Phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase PF555_01640 IPR011060 Ribulose-phosphate binding barrel PF555_01655 IPR017926 Glutamine amidotransferase PF555_01655 IPR029062 Class I glutamine amidotransferase-like PF555_01655 IPR010139 Imidazole glycerol phosphate synthase, subunit H PF555_01660 IPR020568 Ribosomal protein S5 domain 2-type fold PF555_01660 IPR038494 Imidazole glycerol phosphate dehydratase domain superfamily PF555_01660 IPR000807 Imidazoleglycerol-phosphate dehydratase PF555_01660 IPR020565 Imidazoleglycerol-phosphate dehydratase, conserved site PF555_01680 IPR023072 Acetyltransferase, YpeA PF555_01680 IPR017255 Acetyltransferase, GNAT, predicted PF555_01680 IPR016181 Acyl-CoA N-acyltransferase PF555_01680 IPR000182 GNAT domain PF555_01685 IPR026888 Acetyl-CoA hydrolase/transferase C-terminal domain PF555_01685 IPR038460 Acetyl-CoA hydrolase/transferase, C-terminal domain superfamily PF555_01685 IPR003702 Acetyl-CoA hydrolase/transferase PF555_01685 IPR037171 NagB/RpiA transferase-like PF555_01685 IPR017821 Succinate CoA transferase PF555_01695 IPR004358 Signal transduction histidine kinase-related protein, C-terminal PF555_01695 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily PF555_01695 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain PF555_01695 IPR005467 Histidine kinase domain PF555_01695 IPR036890 Histidine kinase/HSP90-like ATPase superfamily PF555_01695 IPR003594 Histidine kinase/HSP90-like ATPase PF555_01695 IPR003660 HAMP domain PF555_01700 IPR011006 CheY-like superfamily PF555_01700 IPR001867 OmpR/PhoB-type DNA-binding domain PF555_01700 IPR016032 Signal transduction response regulator, C-terminal effector PF555_01700 IPR001789 Signal transduction response regulator, receiver domain PF555_01700 IPR039420 Transcriptional regulatory protein WalR-like PF555_01700 IPR036388 Winged helix-like DNA-binding domain superfamily PF555_01705 IPR006641 YqgF/RNase H-like domain PF555_01705 IPR032639 Tex protein, YqgF-like domain PF555_01705 IPR018974 Tex-like protein, N-terminal PF555_01705 IPR023319 Tex-like protein, HTH domain superfamily PF555_01705 IPR037027 YqgF/RNase H-like domain superfamily PF555_01705 IPR003029 S1 domain PF555_01705 IPR022967 RNA-binding domain, S1 PF555_01705 IPR010994 RuvA domain 2-like PF555_01705 IPR012337 Ribonuclease H-like superfamily PF555_01705 IPR012340 Nucleic acid-binding, OB-fold PF555_01705 IPR023323 Tex-like domain superfamily PF555_01705 IPR041692 HHH domain 9 PF555_01710 IPR036513 STAS domain superfamily PF555_01710 IPR001902 SLC26A/SulP transporter PF555_01710 IPR002645 STAS domain PF555_01710 IPR011547 SLC26A/SulP transporter domain PF555_01715 IPR036291 NAD(P)-binding domain superfamily PF555_01715 IPR020904 Short-chain dehydrogenase/reductase, conserved site PF555_01715 IPR002347 Short-chain dehydrogenase/reductase SDR PF555_01720 IPR000277 Cys/Met metabolism, pyridoxal phosphate-dependent enzyme PF555_01720 IPR006235 O-acetylhomoserine/O-acetylserine sulfhydrylase PF555_01720 IPR015424 Pyridoxal phosphate-dependent transferase PF555_01720 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 PF555_01720 IPR015421 Pyridoxal phosphate-dependent transferase, major domain PF555_01725 IPR027417 P-loop containing nucleoside triphosphate hydrolase PF555_01725 IPR022374 Energy-dependent translational throttle protein EttA PF555_01725 IPR003439 ABC transporter-like PF555_01725 IPR032781 ABC-transporter extension domain PF555_01725 IPR017871 ABC transporter, conserved site PF555_01725 IPR003593 AAA+ ATPase domain PF555_01750 IPR006143 RND efflux pump, membrane fusion protein PF555_01750 IPR032317 RND efflux pump, membrane fusion protein, barrel-sandwich domain PF555_01750 IPR005695 Cobalt/zinc/cadmium resistance protein CzcB PF555_01755 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains PF555_01755 IPR001036 Acriflavin resistance protein PF555_01755 IPR004763 Cation efflux system CzcA/CusA/SilA/NccA/HelA/CnrA PF555_01760 IPR027469 Cation efflux transmembrane domain superfamily PF555_01760 IPR002524 Cation efflux protein PF555_01760 IPR036837 Cation efflux protein, cytoplasmic domain superfamily PF555_01790 IPR004841 Amino acid permease/ SLC12A domain PF555_01790 IPR004840 Amino acid permease, conserved site PF555_01805 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site PF555_01805 IPR004527 Glutamate-tRNA ligase, bacterial/mitochondrial PF555_01805 IPR000924 Glutamyl/glutaminyl-tRNA synthetase PF555_01805 IPR020058 Glutamyl/glutaminyl-tRNA synthetase, class Ib, catalytic domain PF555_01805 IPR033910 Glutamyl-tRNA synthetase PF555_01805 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold PF555_01805 IPR008925 Aminoacyl-tRNA synthetase, class I, anticodon-binding PF555_01805 IPR020751 Aminoacyl-tRNA synthetase, class I, anticodon-binding domain, subdomain 2 PF555_01815 IPR000957 Sulphate/thiosulphate-binding, conserved site PF555_01815 IPR005669 Thiosulphate/Sulfate-binding protein PF555_01815 IPR034408 Sulphate/thiosulphate-binding site PF555_01820 IPR002903 Ribosomal RNA small subunit methyltransferase H PF555_01820 IPR023397 S-adenosyl-L-methionine-dependent methyltransferase, MraW, recognition domain superfamily PF555_01820 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase PF555_01830 IPR005311 Penicillin-binding protein, dimerisation domain PF555_01830 IPR001460 Penicillin-binding protein, transpeptidase PF555_01830 IPR036138 Penicillin-binding protein, dimerisation domain superfamily PF555_01830 IPR037532 Peptidoglycan D,D-transpeptidase FtsI PF555_01830 IPR012338 Beta-lactamase/transpeptidase-like PF555_01835 IPR036565 Mur-like, catalytic domain superfamily PF555_01835 IPR004101 Mur ligase, C-terminal PF555_01835 IPR036615 Mur ligase, C-terminal domain superfamily PF555_01835 IPR013221 Mur ligase, central PF555_01835 IPR000713 Mur ligase, N-terminal catalytic domain PF555_01835 IPR035911 MurE/MurF, N-terminal PF555_01835 IPR005761 UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase PF555_01840 IPR036615 Mur ligase, C-terminal domain superfamily PF555_01840 IPR005863 UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase PF555_01840 IPR035911 MurE/MurF, N-terminal PF555_01840 IPR036565 Mur-like, catalytic domain superfamily PF555_01840 IPR013221 Mur ligase, central PF555_01840 IPR004101 Mur ligase, C-terminal PF555_01840 IPR000713 Mur ligase, N-terminal catalytic domain PF555_01845 IPR000715 Glycosyl transferase, family 4 PF555_01845 IPR018480 Phospho-N-acetylmuramoyl-pentapeptide transferase, conserved site PF555_01845 IPR003524 Phospho-N-acetylmuramoyl-pentapeptide transferase PF555_01855 IPR025714 Methyltransferase domain PF555_01855 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase PF555_01855 IPR016718 rRNA (guanine-N1-)-methyltransferase A, predicted PF555_01860 IPR012338 Beta-lactamase/transpeptidase-like PF555_01860 IPR001264 Glycosyl transferase, family 51 PF555_01860 IPR023346 Lysozyme-like domain superfamily PF555_01860 IPR036950 Penicillin binding protein transglycosylase domain PF555_01860 IPR031376 Penicillin-binding protein, OB-like domain PF555_01860 IPR001460 Penicillin-binding protein, transpeptidase PF555_01865 IPR003494 SHS2 domain inserted in FtsA PF555_01865 IPR005883 Type IV pilus assembly protein PilM PF555_01870 IPR007813 Fimbrial assembly PilN PF555_01875 IPR007445 Pilus assembly protein, PilO PF555_01875 IPR014717 Translation elongation factor EF1B/ribosomal protein S6 PF555_01885 IPR004845 Type II secretion system GspD, conserved site PF555_01885 IPR001775 GspD/PilQ family PF555_01885 IPR011662 Secretin/TonB, short N-terminal domain PF555_01885 IPR038591 NolW-like superfamily PF555_01885 IPR013355 Type IV pilus secretin PilQ PF555_01885 IPR021731 AMIN domain PF555_01885 IPR004846 Type II/III secretion system PF555_01885 IPR005644 NolW-like PF555_01890 IPR027417 P-loop containing nucleoside triphosphate hydrolase PF555_01890 IPR031322 Shikimate kinase/gluconokinase PF555_01890 IPR023000 Shikimate kinase, conserved site PF555_01890 IPR000623 Shikimate kinase/Threonine synthase-like 1 PF555_01895 IPR030960 3-dehydroquinate synthase domain PF555_01895 IPR030963 3-dehydroquinate synthase family PF555_01895 IPR016037 3-dehydroquinate synthase AroB PF555_01905 IPR002932 Glutamate synthase domain PF555_01905 IPR002489 Glutamate synthase, alpha subunit, C-terminal PF555_01905 IPR036485 Glutamate synthase, alpha subunit, C-terminal domain superfamily PF555_01905 IPR006982 Glutamate synthase, central-N PF555_01905 IPR029055 Nucleophile aminohydrolases, N-terminal PF555_01905 IPR013785 Aldolase-type TIM barrel PF555_01905 IPR017932 Glutamine amidotransferase type 2 domain PF555_01910 IPR009051 Alpha-helical ferredoxin PF555_01910 IPR006006 Glutamate synthase, NADH/NADPH, small subunit 2 PF555_01910 IPR023753 FAD/NAD(P)-binding domain PF555_01910 IPR036188 FAD/NAD(P)-binding domain superfamily PF555_01910 IPR028261 Dihydroprymidine dehydrogenase domain II PF555_01920 IPR007156 LemA PF555_01920 IPR023353 LemA-like domain superfamily PF555_01925 IPR007621 TPM domain PF555_01935 IPR001082 Fimbrial protein pilin PF555_01935 IPR012902 Prokaryotic N-terminal methylation site PF555_01935 IPR000983 Bacterial general secretion pathway protein G-type pilin PF555_01945 IPR021797 Virulence factor membrane-bound polymerase, C-terminal PF555_01945 IPR031726 Protein glycosylation ligase domain PF555_01945 IPR007016 O-antigen ligase-related PF555_01950 IPR002024 Bacterioferritin PF555_01950 IPR012347 Ferritin-like PF555_01950 IPR008331 Ferritin/DPS protein domain PF555_01950 IPR009078 Ferritin-like superfamily PF555_01950 IPR009040 Ferritin-like diiron domain PF555_01955 IPR041854 BFD-like [2Fe-2S]-binding domain superfamily PF555_01955 IPR007419 BFD-like [2Fe-2S]-binding domain PF555_01960 IPR019897 RidA, conserved site PF555_01960 IPR006175 YjgF/YER057c/UK114 family PF555_01960 IPR035959 RutC-like superfamily PF555_01960 IPR006056 RidA family PF555_01965 IPR003607 HD/PDEase domain PF555_01965 IPR012675 Beta-grasp domain superfamily PF555_01965 IPR004811 RelA/SpoT family PF555_01965 IPR002912 ACT domain PF555_01965 IPR007685 RelA/SpoT PF555_01965 IPR004095 TGS PF555_01965 IPR012676 TGS-like PF555_01965 IPR033655 RelA, TGS domain PF555_01975 IPR003716 DNA-directed RNA polymerase, omega subunit PF555_01975 IPR036161 RPB6/omega subunit-like superfamily PF555_01975 IPR012293 RNA polymerase subunit, RPB6/omega PF555_01975 IPR006110 RNA polymerase, subunit omega/K/RPB6 PF555_01980 IPR020590 Guanylate kinase, conserved site PF555_01980 IPR027417 P-loop containing nucleoside triphosphate hydrolase PF555_01980 IPR017665 Guanylate kinase PF555_01980 IPR008144 Guanylate kinase-like domain PF555_01980 IPR008145 Guanylate kinase/L-type calcium channel beta subunit PF555_01985 IPR003451 4-hydroxy-3-methylbut-2-enyl diphosphate reductase PF555_02025 IPR023803 Ribosomal protein S16 domain superfamily PF555_02025 IPR020592 Ribosomal protein S16, conserved site PF555_02025 IPR000307 Ribosomal protein S16 PF555_02030 IPR027275 PRC-barrel domain PF555_02030 IPR011033 PRC-barrel-like superfamily PF555_02030 IPR011961 16S rRNA processing protein RimM PF555_02030 IPR002676 RimM, N-terminal PF555_02030 IPR036976 RimM, N-terminal domain superfamily PF555_02030 IPR009000 Translation protein, beta-barrel domain superfamily PF555_02035 IPR023148 tRNA (guanine-N1-)-methyltransferase, C-terminal PF555_02035 IPR002649 tRNA (guanine-N1-)-methyltransferase, bacteria PF555_02035 IPR029028 Alpha/beta knot methyltransferases PF555_02035 IPR016009 tRNA methyltransferase TRMD/TRM10-type domain PF555_02035 IPR029026 tRNA (guanine-N1-)-methyltransferase, N-terminal PF555_02040 IPR008991 Translation protein SH3-like domain superfamily PF555_02040 IPR038657 Ribosomal protein L19 superfamily PF555_02040 IPR001857 Ribosomal protein L19 PF555_02040 IPR018257 Ribosomal protein L19, conserved site PF555_02045 IPR000073 Alpha/beta hydrolase fold-1 PF555_02045 IPR029058 Alpha/Beta hydrolase fold PF555_02050 IPR004961 Lipase chaperone PF555_02055 IPR014780 tRNA pseudouridine synthase II, TruB PF555_02055 IPR032819 tRNA pseudouridylate synthase B, C-terminal PF555_02055 IPR015947 PUA-like superfamily PF555_02055 IPR002501 Pseudouridine synthase II, N-terminal PF555_02055 IPR020103 Pseudouridine synthase, catalytic domain superfamily PF555_02055 IPR015240 tRNA pseudouridine synthase II, TruB, subfamily 1, C-terminal PF555_02060 IPR002781 Transmembrane protein TauE-like PF555_02070 IPR000620 EamA domain PF555_02075 IPR000620 EamA domain PF555_02080 IPR036291 NAD(P)-binding domain superfamily PF555_02080 IPR006139 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain PF555_02080 IPR002912 ACT domain PF555_02080 IPR029752 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain conserved site 1 PF555_02080 IPR006140 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain PF555_02080 IPR029753 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain conserved site PF555_02085 IPR016171 Vanillyl-alcohol oxidase, C-terminal subdomain 2 PF555_02085 IPR006094 FAD linked oxidase, N-terminal PF555_02085 IPR016166 FAD-binding domain, PCMH-type PF555_02085 IPR004113 FAD-linked oxidase, C-terminal PF555_02085 IPR016164 FAD-linked oxidase-like, C-terminal PF555_02085 IPR036318 FAD-binding, type PCMH-like superfamily PF555_02085 IPR004490 Glycolate oxidase subunit GlcD PF555_02100 IPR007138 Antibiotic biosynthesis monooxygenase domain PF555_02100 IPR011008 Dimeric alpha-beta barrel PF555_02105 IPR003680 Flavodoxin-like fold PF555_02105 IPR029039 Flavoprotein-like superfamily PF555_02115 IPR005829 Sugar transporter, conserved site PF555_02115 IPR020846 Major facilitator superfamily domain PF555_02115 IPR036259 MFS transporter superfamily PF555_02115 IPR011701 Major facilitator superfamily PF555_02120 IPR010019 Integral membrane protein, YccS PF555_02120 IPR010020 Integral membrane protein, YccS/YhfK PF555_02120 IPR032692 Integral membrane protein YccS, N-terminal PF555_02125 IPR036423 Superoxide dismutase-like, copper/zinc binding domain superfamily PF555_02125 IPR024134 Superoxide dismutase (Cu/Zn) / superoxide dismutase copper chaperone PF555_02125 IPR018152 Superoxide dismutase, copper/zinc, binding site PF555_02125 IPR001424 Superoxide dismutase, copper/zinc binding domain PF555_02130 IPR002549 Transmembrane protein TqsA-like PF555_02135 IPR025669 AAA domain PF555_02135 IPR027417 P-loop containing nucleoside triphosphate hydrolase PF555_02155 IPR013216 Methyltransferase type 11 PF555_02155 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase PF555_02165 IPR004840 Amino acid permease, conserved site PF555_02165 IPR004841 Amino acid permease/ SLC12A domain PF555_02170 IPR033524 Leu/Phe/Val dehydrogenases active site PF555_02170 IPR006096 Glutamate/phenylalanine/leucine/valine dehydrogenase, C-terminal PF555_02170 IPR006097 Glutamate/phenylalanine/leucine/valine dehydrogenase, dimerisation domain PF555_02170 IPR014362 Glutamate dehydrogenase PF555_02170 IPR036291 NAD(P)-binding domain superfamily PF555_02170 IPR033922 NAD(P) binding domain of glutamate dehydrogenase PF555_02170 IPR006095 Glutamate/phenylalanine/leucine/valine dehydrogenase PF555_02175 IPR026330 Succinylornithine transaminase PF555_02175 IPR015424 Pyridoxal phosphate-dependent transferase PF555_02175 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 PF555_02175 IPR004636 Acetylornithine/Succinylornithine transaminase family PF555_02175 IPR017652 Acetyl/Succinylornithine transaminase family, bacteria PF555_02175 IPR015421 Pyridoxal phosphate-dependent transferase, major domain PF555_02175 IPR005814 Aminotransferase class-III PF555_02180 IPR016181 Acyl-CoA N-acyltransferase PF555_02180 IPR007041 Arginine N-succinyltransferase AstA/AruG PF555_02180 IPR017650 Arginine N-succinyltransferase PF555_02185 IPR016163 Aldehyde dehydrogenase, C-terminal PF555_02185 IPR016160 Aldehyde dehydrogenase, cysteine active site PF555_02185 IPR016161 Aldehyde/histidinol dehydrogenase PF555_02185 IPR029510 Aldehyde dehydrogenase, glutamic acid active site PF555_02185 IPR016162 Aldehyde dehydrogenase, N-terminal PF555_02185 IPR015590 Aldehyde dehydrogenase domain PF555_02185 IPR017649 Succinylglutamate-semialdehyde dehydrogenase PF555_02190 IPR007079 Succinylarginine dihydrolase PF555_02190 IPR037031 Succinylarginine dihydrolase superfamily PF555_02195 IPR016681 Succinylglutamate desuccinylase PF555_02195 IPR007036 Succinylglutamate desuccinylase/aspartoacylase PF555_02210 IPR023827 Peptidase S8, subtilisin, Asp-active site PF555_02210 IPR036852 Peptidase S8/S53 domain superfamily PF555_02210 IPR022398 Peptidase S8, subtilisin, His-active site PF555_02210 IPR023828 Peptidase S8, subtilisin, Ser-active site PF555_02210 IPR000209 Peptidase S8/S53 domain PF555_02210 IPR010259 Peptidase S8 propeptide/proteinase inhibitor I9 PF555_02210 IPR037045 Peptidase S8 propeptide/proteinase inhibitor I9 superfamily PF555_02210 IPR034202 Subtilisin Carlsberg-like catalytic domain PF555_02210 IPR015500 Peptidase S8, subtilisin-related PF555_02225 IPR005119 LysR, substrate-binding PF555_02225 IPR000847 Transcription regulator HTH, LysR PF555_02225 IPR036388 Winged helix-like DNA-binding domain superfamily PF555_02225 IPR036390 Winged helix DNA-binding domain superfamily PF555_02230 IPR000620 EamA domain PF555_02250 IPR025668 Transposase DDE domain PF555_02260 IPR008909 DALR anticodon binding PF555_02260 IPR015944 Glycine-tRNA ligase, beta subunit PF555_02260 IPR006194 Glycine-tRNA synthetase, heterodimeric PF555_02265 IPR006194 Glycine-tRNA synthetase, heterodimeric PF555_02265 IPR002310 Glycine-tRNA ligase, alpha subunit PF555_02270 IPR004734 Multidrug resistance protein PF555_02270 IPR011701 Major facilitator superfamily PF555_02270 IPR020846 Major facilitator superfamily domain PF555_02270 IPR036259 MFS transporter superfamily PF555_02270 IPR005829 Sugar transporter, conserved site PF555_02270 IPR001958 Tetracycline resistance protein TetA/multidrug resistance protein MdtG PF555_02285 IPR000644 CBS domain PF555_02290 IPR007168 Phage shock protein, PspC, N-terminal PF555_02300 IPR025878 Acetyl-CoA dehydrogenase-like C-terminal domain PF555_02300 IPR037069 Acyl-CoA dehydrogenase/oxidase, N-terminal domain superfamily PF555_02300 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily PF555_02300 IPR006091 Acyl-CoA oxidase/dehydrogenase, central domain PF555_02300 IPR036250 Acyl-CoA dehydrogenase-like, C-terminal PF555_02300 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal PF555_02300 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal PF555_02310 IPR036291 NAD(P)-binding domain superfamily PF555_02310 IPR041121 SDH, C-terminal PF555_02310 IPR011342 Shikimate dehydrogenase PF555_02310 IPR013708 Shikimate dehydrogenase substrate binding, N-terminal PF555_02310 IPR022893 Shikimate dehydrogenase family PF555_02310 IPR006151 Quinate/shikimate 5-dehydrogenase/glutamyl-tRNA reductase PF555_02315 IPR036406 Oxygen-dependent coproporphyrinogen III oxidase superfamily PF555_02315 IPR001260 Coproporphyrinogen III oxidase, aerobic PF555_02315 IPR018375 Coproporphyrinogen III oxidase, conserved site PF555_02320 IPR032677 GTP cyclohydrolase II PF555_02320 IPR000926 GTP cyclohydrolase II, RibA PF555_02320 IPR036144 RibA-like superfamily PF555_02325 IPR005477 Deoxyxylulose-5-phosphate synthase PF555_02325 IPR029061 Thiamin diphosphate-binding fold PF555_02325 IPR033248 Transketolase, C-terminal domain PF555_02325 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II PF555_02325 IPR005475 Transketolase-like, pyrimidine-binding domain PF555_02325 IPR020826 Transketolase binding site PF555_02330 IPR033942 Inositol monophosphatase PF555_02330 IPR020550 Inositol monophosphatase, conserved site PF555_02330 IPR020583 Inositol monophosphatase, metal-binding site PF555_02330 IPR022337 Inositol monophosphatase, SuhB PF555_02330 IPR000760 Inositol monophosphatase-like PF555_02335 IPR014001 Helicase superfamily 1/2, ATP-binding domain PF555_02335 IPR012677 Nucleotide-binding alpha-beta plait domain superfamily PF555_02335 IPR027417 P-loop containing nucleoside triphosphate hydrolase PF555_02335 IPR014014 RNA helicase, DEAD-box type, Q motif PF555_02335 IPR001650 Helicase, C-terminal PF555_02335 IPR028618 ATP-dependent RNA helicase DeaD PF555_02335 IPR000629 ATP-dependent RNA helicase DEAD-box, conserved site PF555_02335 IPR005580 DEAD box helicase DbpA/CsdA, RNA-binding domain PF555_02335 IPR034415 CsdA, RNA recognition motif PF555_02335 IPR021046 Cold-shock protein, DEAD box A, C-terminal PF555_02335 IPR011545 DEAD/DEAH box helicase domain PF555_02345 IPR027417 P-loop containing nucleoside triphosphate hydrolase PF555_02345 IPR030296 Probable ABC transporter ATP-binding protein MlaF/Mkl PF555_02345 IPR017871 ABC transporter, conserved site PF555_02345 IPR003593 AAA+ ATPase domain PF555_02345 IPR003439 ABC transporter-like PF555_02350 IPR003453 ABC transport permease subunit MlaE, Proteobacteria PF555_02350 IPR030802 ABC transporter permease MalE PF555_02360 IPR008869 Toluene tolerance Ttg2/phospholipid-binding protein MlaC PF555_02360 IPR042245 Tgt2/MlaC superfamily PF555_02370 IPR002523 Mg2+ transporter protein, CorA-like/Zinc transport protein ZntB PF555_02370 IPR004488 Magnesium/cobalt transport protein CorA PF555_02375 IPR031100 LOG family PF555_02375 IPR005269 Cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG PF555_02380 IPR000086 NUDIX hydrolase domain PF555_02380 IPR020084 NUDIX hydrolase, conserved site PF555_02380 IPR015797 NUDIX hydrolase-like domain superfamily PF555_02380 IPR020476 NUDIX hydrolase PF555_02385 IPR029057 Phosphoribosyltransferase-like PF555_02385 IPR000836 Phosphoribosyltransferase domain PF555_02385 IPR005222 Competence protein ComF PF555_02390 IPR004609 ATP-dependent DNA helicase RecG PF555_02390 IPR011545 DEAD/DEAH box helicase domain PF555_02390 IPR014001 Helicase superfamily 1/2, ATP-binding domain PF555_02390 IPR001650 Helicase, C-terminal PF555_02390 IPR012340 Nucleic acid-binding, OB-fold PF555_02390 IPR027417 P-loop containing nucleoside triphosphate hydrolase PF555_02390 IPR033454 RecG, wedge domain PF555_02400 IPR038404 TRAP transporter solute receptor DctP superfamily PF555_02405 IPR002123 Phospholipid/glycerol acyltransferase PF555_02405 IPR022284 Glycerol-3-phosphate O-acyltransferase/Dihydroxyacetone phosphate acyltransferase PF555_02405 IPR041728 GPAT/DHAPAT, acyltransferase domain PF555_02405 IPR028354 Glycerol-3-phosphate acyltransferase, PlsB PF555_02410 IPR029069 HotDog domain superfamily PF555_02410 IPR003703 Acyl-CoA thioesterase PF555_02415 IPR018107 Sodium:dicarboxylate symporter, conserved site PF555_02415 IPR036458 Sodium:dicarboxylate symporter superfamily PF555_02415 IPR001991 Sodium:dicarboxylate symporter PF555_02415 IPR034703 Proton/glutamate-aspartate symporter GltP PF555_02415 IPR033380 Glutamate-aspartate symport protein GltP/GltT PF555_02425 IPR030393 EngB-type guanine nucleotide-binding (G) domain PF555_02425 IPR019987 GTP-binding protein, ribosome biogenesis, YsxC PF555_02425 IPR006073 GTP binding domain PF555_02425 IPR027417 P-loop containing nucleoside triphosphate hydrolase PF555_02430 IPR036390 Winged helix DNA-binding domain superfamily PF555_02430 IPR023761 Transcriptional repressor HTH, NsrR PF555_02430 IPR000944 Transcription regulator Rrf2-type PF555_02430 IPR030489 Transcription regulator Rrf2-type, conserved site PF555_02430 IPR036388 Winged helix-like DNA-binding domain superfamily PF555_02435 IPR001433 Oxidoreductase FAD/NAD(P)-binding PF555_02435 IPR017938 Riboflavin synthase-like beta-barrel PF555_02435 IPR023950 Flavohemoprotein PF555_02435 IPR017927 FAD-binding domain, ferredoxin reductase-type PF555_02435 IPR009050 Globin-like superfamily PF555_02435 IPR000971 Globin PF555_02435 IPR039261 Ferredoxin-NADP reductase (FNR), nucleotide-binding domain PF555_02435 IPR008333 Flavoprotein pyridine nucleotide cytochrome reductase-like, FAD-binding domain PF555_02435 IPR012292 Globin/Protoglobin PF555_02445 IPR033186 Helicase HerA-like C-terminal PF555_02445 IPR027417 P-loop containing nucleoside triphosphate hydrolase PF555_02450 IPR015421 Pyridoxal phosphate-dependent transferase, major domain PF555_02450 IPR006233 Cystathionine beta-lyase, bacterial PF555_02450 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 PF555_02450 IPR000277 Cys/Met metabolism, pyridoxal phosphate-dependent enzyme PF555_02450 IPR015424 Pyridoxal phosphate-dependent transferase PF555_02455 IPR029062 Class I glutamine amidotransferase-like PF555_02455 IPR017926 Glutamine amidotransferase PF555_02460 IPR001848 Ribosomal protein S10 PF555_02460 IPR018268 Ribosomal protein S10, conserved site PF555_02460 IPR027486 Ribosomal protein S10 domain PF555_02460 IPR036838 Ribosomal protein S10 domain superfamily PF555_02465 IPR000597 Ribosomal protein L3 PF555_02465 IPR019927 Ribosomal protein L3, bacterial/organelle-type PF555_02465 IPR019926 Ribosomal protein L3, conserved site PF555_02465 IPR009000 Translation protein, beta-barrel domain superfamily PF555_02470 IPR002136 Ribosomal protein L4/L1e PF555_02470 IPR013005 50S ribosomal protein uL4 PF555_02470 IPR023574 Ribosomal protein L4 domain superfamily PF555_02475 IPR012678 Ribosomal protein L23/L15e core domain superfamily PF555_02475 IPR013025 Ribosomal protein L25/L23 PF555_02475 IPR012677 Nucleotide-binding alpha-beta plait domain superfamily PF555_02480 IPR008991 Translation protein SH3-like domain superfamily PF555_02480 IPR014726 Ribosomal protein L2, domain 3 PF555_02480 IPR022666 Ribosomal Proteins L2, RNA binding domain PF555_02480 IPR005880 Ribosomal protein L2, bacterial/organellar-type PF555_02480 IPR002171 Ribosomal protein L2 PF555_02480 IPR012340 Nucleic acid-binding, OB-fold PF555_02480 IPR014722 Ribosomal protein L2, domain 2 PF555_02480 IPR022669 Ribosomal protein L2, C-terminal PF555_02485 IPR005732 Ribosomal protein S19, bacterial-type PF555_02485 IPR020934 Ribosomal protein S19 conserved site PF555_02485 IPR023575 Ribosomal protein S19, superfamily PF555_02485 IPR002222 Ribosomal protein S19/S15 PF555_02490 IPR001063 Ribosomal protein L22/L17 PF555_02490 IPR036394 Ribosomal protein L22/L17 superfamily PF555_02490 IPR018260 Ribosomal protein L22/L17, conserved site PF555_02490 IPR005727 Ribosomal protein L22, bacterial/chloroplast-type PF555_02500 IPR016180 Ribosomal protein L10e/L16 PF555_02500 IPR000114 Ribosomal protein L16 PF555_02500 IPR036920 Ribosomal protein L10e/L16 superfamily PF555_02500 IPR020798 Ribosomal protein L16, conserved site PF555_02505 IPR001854 Ribosomal protein L29/L35 PF555_02505 IPR036049 Ribosomal protein L29/L35 superfamily PF555_02510 IPR019984 30S ribosomal protein S17 PF555_02510 IPR000266 Ribosomal protein S17/S11 PF555_02510 IPR019979 Ribosomal protein S17, conserved site PF555_02510 IPR012340 Nucleic acid-binding, OB-fold PF555_02515 IPR036853 Ribosomal protein L14 superfamily PF555_02515 IPR000218 Ribosomal protein L14P PF555_02515 IPR005745 Ribosomal protein L14P, bacterial-type PF555_02515 IPR019972 Ribosomal protein L14P, conserved site PF555_02520 IPR005825 Ribosomal protein L24/L26, conserved site PF555_02520 IPR008991 Translation protein SH3-like domain superfamily PF555_02520 IPR041988 Ribosomal Protein L26/L24, KOW domain PF555_02520 IPR003256 Ribosomal protein L24 PF555_02520 IPR014722 Ribosomal protein L2, domain 2 PF555_02520 IPR005824 KOW PF555_02525 IPR020930 Ribosomal protein L5, bacterial-type PF555_02525 IPR031309 Ribosomal protein L5, C-terminal PF555_02525 IPR020929 Ribosomal protein L5, conserved site PF555_02525 IPR022803 Ribosomal protein L5 domain superfamily PF555_02525 IPR031310 Ribosomal protein L5, N-terminal PF555_02525 IPR002132 Ribosomal protein L5 PF555_02530 IPR001209 Ribosomal protein S14 PF555_02530 IPR023036 Ribosomal protein S14, bacterial/plastid PF555_02530 IPR018271 Ribosomal protein S14, conserved site PF555_02535 IPR000630 Ribosomal protein S8 PF555_02535 IPR035987 Ribosomal protein S8 superfamily PF555_02540 IPR002358 Ribosomal protein L6, conserved site PF555_02540 IPR020040 Ribosomal protein L6, alpha-beta domain PF555_02540 IPR036789 Ribosomal protein L6, alpha-beta domain superfamily PF555_02540 IPR019906 Ribosomal protein L6, bacterial-type PF555_02540 IPR000702 Ribosomal protein L6 PF555_02545 IPR005484 Ribosomal protein L18 PF555_02545 IPR004389 Ribosomal protein L18, bacterial-type PF555_02550 IPR000851 Ribosomal protein S5 PF555_02550 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup PF555_02550 IPR005712 Ribosomal protein S5, bacterial-type PF555_02550 IPR005324 Ribosomal protein S5, C-terminal PF555_02550 IPR020568 Ribosomal protein S5 domain 2-type fold PF555_02550 IPR013810 Ribosomal protein S5, N-terminal PF555_02550 IPR018192 Ribosomal protein S5, N-terminal, conserved site PF555_02555 IPR036919 Ribosomal protein L30, ferredoxin-like fold domain superfamily PF555_02555 IPR005996 Ribosomal protein L30, bacterial-type PF555_02555 IPR016082 Ribosomal protein L30, ferredoxin-like fold domain PF555_02560 IPR021131 Ribosomal protein L18e/L15P PF555_02560 IPR005749 Ribosomal protein L15, bacterial-type PF555_02560 IPR030878 Ribosomal protein L15 PF555_02560 IPR036227 Ribosomal L18e/L15P superfamily PF555_02560 IPR001196 Ribosomal protein L15, conserved site PF555_02565 IPR026593 Protein translocase subunit SecY PF555_02565 IPR002208 SecY/SEC61-alpha family PF555_02565 IPR030659 SecY conserved site PF555_02565 IPR023201 SecY domain superfamily PF555_02570 IPR000473 Ribosomal protein L36 PF555_02570 IPR035977 Ribosomal protein L36 superfamily PF555_02575 IPR027437 30s ribosomal protein S13, C-terminal PF555_02575 IPR001892 Ribosomal protein S13 PF555_02575 IPR010979 Ribosomal protein S13-like, H2TH PF555_02575 IPR019980 Ribosomal protein S13, bacterial-type PF555_02575 IPR018269 Ribosomal protein S13, conserved site PF555_02580 IPR036967 Ribosomal protein S11 superfamily PF555_02580 IPR001971 Ribosomal protein S11 PF555_02580 IPR019981 Ribosomal protein S11, bacterial-type PF555_02580 IPR018102 Ribosomal S11, conserved site PF555_02585 IPR022801 Ribosomal protein S4/S9 PF555_02585 IPR001912 Ribosomal protein S4/S9, N-terminal PF555_02585 IPR005709 Ribosomal protein S4, bacterial-type PF555_02585 IPR018079 Ribosomal protein S4, conserved site PF555_02585 IPR002942 RNA-binding S4 domain PF555_02585 IPR036986 RNA-binding S4 domain superfamily PF555_02590 IPR036643 DNA-directed RNA polymerase, insert domain superfamily PF555_02590 IPR011260 RNA polymerase, alpha subunit, C-terminal PF555_02590 IPR011773 DNA-directed RNA polymerase, alpha subunit PF555_02590 IPR011263 DNA-directed RNA polymerase, RpoA/D/Rpb3-type PF555_02590 IPR011262 DNA-directed RNA polymerase, insert domain PF555_02590 IPR036603 RNA polymerase, RBP11-like subunit PF555_02595 IPR000456 Ribosomal protein L17 PF555_02595 IPR036373 Ribosomal protein L17 superfamily PF555_02600 IPR036188 FAD/NAD(P)-binding domain superfamily PF555_02600 IPR020946 Flavin monooxygenase-like PF555_02605 IPR037069 Acyl-CoA dehydrogenase/oxidase, N-terminal domain superfamily PF555_02605 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal PF555_02605 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily PF555_02605 IPR036250 Acyl-CoA dehydrogenase-like, C-terminal PF555_02605 IPR006091 Acyl-CoA oxidase/dehydrogenase, central domain PF555_02605 IPR006089 Acyl-CoA dehydrogenase, conserved site PF555_02605 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal PF555_02610 IPR005631 Flavinator of succinate dehydrogenase PF555_02610 IPR036714 Flavinator of succinate dehydrogenase superfamily PF555_02640 IPR012658 Conserved hypothetical protein CHP02443 PF555_02645 IPR024077 Neurolysin/Thimet oligopeptidase, domain 2 PF555_02645 IPR001567 Peptidase M3A/M3B catalytic domain PF555_02650 IPR003029 S1 domain PF555_02650 IPR022967 RNA-binding domain, S1 PF555_02650 IPR013668 Ribonuclease R winged-helix domain PF555_02650 IPR004476 Ribonuclease II/ribonuclease R PF555_02650 IPR011805 Ribonuclease R PF555_02650 IPR013223 Ribonuclease B, N-terminal OB domain PF555_02650 IPR022966 Ribonuclease II/R, conserved site PF555_02650 IPR011129 Cold shock domain PF555_02650 IPR001900 Ribonuclease II/R PF555_02650 IPR012340 Nucleic acid-binding, OB-fold PF555_02650 IPR040476 RNase II/RNase R, cold shock domain PF555_02695 IPR011234 Fumarylacetoacetase-like, C-terminal PF555_02695 IPR036663 Fumarylacetoacetase-like, C-terminal domain superfamily PF555_02700 IPR018060 DNA binding HTH domain, AraC-type PF555_02700 IPR018062 HTH domain AraC-type, conserved site PF555_02700 IPR014710 RmlC-like jelly roll fold PF555_02700 IPR011051 RmlC-like cupin domain superfamily PF555_02700 IPR008917 Transcription factor, Skn-1-like, DNA-binding domain superfamily PF555_02700 IPR020449 Transcription regulator HTH, AraC- type PF555_02700 IPR009057 Homeobox-like domain superfamily PF555_02705 IPR000620 EamA domain PF555_02710 IPR023679 Uncharacterised protein family UPF0761, bacterial PF555_02710 IPR017039 Virulence factor BrkB PF555_02715 IPR001226 Flavodoxin, conserved site PF555_02715 IPR029039 Flavoprotein-like superfamily PF555_02715 IPR010089 Flavoprotein WrbA-like PF555_02715 IPR005025 NADPH-dependent FMN reductase-like PF555_02715 IPR008254 Flavodoxin/nitric oxide synthase PF555_02720 IPR000836 Phosphoribosyltransferase domain PF555_02720 IPR029057 Phosphoribosyltransferase-like PF555_02720 IPR010079 Xanthine phosphoribosyltransferase PF555_02740 IPR002036 Endoribonuclease YbeY PF555_02740 IPR023091 Metalloprotease catalytic domain superfamily, predicted PF555_02740 IPR020549 Endoribonuclease YbeY, conserved site PF555_02745 IPR027417 P-loop containing nucleoside triphosphate hydrolase PF555_02745 IPR003714 PhoH-like protein PF555_02750 IPR005839 Methylthiotransferase PF555_02750 IPR020612 Methylthiotransferase, conserved site PF555_02750 IPR013848 Methylthiotransferase, N-terminal PF555_02750 IPR038135 Methylthiotransferase, N-terminal domain superfamily PF555_02750 IPR006463 tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase MiaB PF555_02750 IPR007197 Radical SAM PF555_02750 IPR023404 Radical SAM, alpha/beta horseshoe PF555_02750 IPR002792 TRAM domain PF555_02750 IPR006638 Elp3/MiaB/NifB PF555_02755 IPR008258 Transglycosylase SLT domain 1 PF555_02755 IPR000189 Prokaryotic transglycosylase, active site PF555_02755 IPR016047 Peptidase M23 PF555_02755 IPR011055 Duplicated hybrid motif PF555_02755 IPR010090 Phage tail tape measure protein PF555_02755 IPR023346 Lysozyme-like domain superfamily PF555_02765 IPR001557 L-lactate/malate dehydrogenase PF555_02765 IPR022383 Lactate/malate dehydrogenase, C-terminal PF555_02765 IPR001236 Lactate/malate dehydrogenase, N-terminal PF555_02765 IPR015955 Lactate dehydrogenase/glycoside hydrolase, family 4, C-terminal PF555_02765 IPR010945 Malate dehydrogenase, type 2 PF555_02765 IPR036291 NAD(P)-binding domain superfamily PF555_02785 IPR002052 DNA methylase, N-6 adenine-specific, conserved site PF555_02785 IPR007473 Ribosomal RNA large subunit methyltransferase J PF555_02785 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase PF555_02790 IPR004533 CDP-diacylglycerol--serine O-phosphatidyltransferase PF555_02790 IPR000462 CDP-alcohol phosphatidyltransferase PF555_02835 IPR006089 Acyl-CoA dehydrogenase, conserved site PF555_02835 IPR006091 Acyl-CoA oxidase/dehydrogenase, central domain PF555_02835 IPR036250 Acyl-CoA dehydrogenase-like, C-terminal PF555_02835 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal PF555_02835 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal PF555_02835 IPR037069 Acyl-CoA dehydrogenase/oxidase, N-terminal domain superfamily PF555_02835 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily PF555_02840 IPR001647 DNA-binding HTH domain, TetR-type PF555_02840 IPR009057 Homeobox-like domain superfamily PF555_02840 IPR036271 Tetracyclin repressor-like, C-terminal domain superfamily PF555_02840 IPR041490 HTH-type transcriptional repressor KstR2, C-terminal PF555_02850 IPR036291 NAD(P)-binding domain superfamily PF555_02850 IPR002347 Short-chain dehydrogenase/reductase SDR PF555_02855 IPR011762 Acetyl-coenzyme A carboxyltransferase, N-terminal PF555_02855 IPR011763 Acetyl-coenzyme A carboxyltransferase, C-terminal PF555_02855 IPR029045 ClpP/crotonase-like domain superfamily PF555_02855 IPR034733 Acetyl-CoA carboxylase PF555_02860 IPR036250 Acyl-CoA dehydrogenase-like, C-terminal PF555_02860 IPR006089 Acyl-CoA dehydrogenase, conserved site PF555_02860 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal PF555_02860 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal PF555_02860 IPR037069 Acyl-CoA dehydrogenase/oxidase, N-terminal domain superfamily PF555_02860 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily PF555_02860 IPR006091 Acyl-CoA oxidase/dehydrogenase, central domain PF555_02870 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain PF555_02870 IPR005481 Biotin carboxylase-like, N-terminal domain PF555_02870 IPR000089 Biotin/lipoyl attachment PF555_02870 IPR011053 Single hybrid motif PF555_02870 IPR011054 Rudiment single hybrid motif PF555_02870 IPR016185 Pre-ATP-grasp domain superfamily PF555_02870 IPR011761 ATP-grasp fold PF555_02870 IPR001882 Biotin-binding site PF555_02870 IPR011764 Biotin carboxylation domain PF555_02870 IPR005482 Biotin carboxylase, C-terminal PF555_02880 IPR007481 Stringent starvation protein B PF555_02880 IPR036760 SspB-like superfamily PF555_02885 IPR034341 Stringent starvation protein A, N-terminal PF555_02885 IPR010987 Glutathione S-transferase, C-terminal-like PF555_02885 IPR036282 Glutathione S-transferase, C-terminal domain superfamily PF555_02885 IPR036249 Thioredoxin-like superfamily PF555_02885 IPR004045 Glutathione S-transferase, N-terminal PF555_02885 IPR040079 Glutathione Transferase family PF555_02885 IPR004046 Glutathione S-transferase, C-terminal PF555_02890 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup PF555_02890 IPR023035 Ribosomal protein S9, bacterial/plastid PF555_02890 IPR020574 Ribosomal protein S9, conserved site PF555_02890 IPR000754 Ribosomal protein S9 PF555_02890 IPR020568 Ribosomal protein S5 domain 2-type fold PF555_02895 IPR005823 Ribosomal protein L13, bacterial-type PF555_02895 IPR036899 Ribosomal protein L13 superfamily PF555_02895 IPR005822 Ribosomal protein L13 PF555_02900 IPR005255 PdxA family PF555_02900 IPR037510 4-hydroxythreonine-4-phosphate dehydrogenase PF555_02905 IPR011530 Ribosomal RNA adenine dimethylase PF555_02905 IPR020598 Ribosomal RNA adenine methylase transferase, N-terminal PF555_02905 IPR023165 rRNA adenine dimethylase-like PF555_02905 IPR001737 Ribosomal RNA adenine methyltransferase KsgA/Erm PF555_02905 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase PF555_02905 IPR020596 Ribosomal RNA adenine methylase transferase, conserved site PF555_02910 IPR004843 Calcineurin-like phosphoesterase domain, ApaH type PF555_02910 IPR004617 Bis(5'-nucleosyl)-tetraphosphatase (symmetrical) PF555_02910 IPR029052 Metallo-dependent phosphatase-like PF555_02930 IPR006073 GTP binding domain PF555_02930 IPR025121 GTPase HflX, N-terminal PF555_02930 IPR042108 GTPase HflX, N-terminal domain superfamily PF555_02930 IPR027417 P-loop containing nucleoside triphosphate hydrolase PF555_02930 IPR035647 EF-G domain III/V-like PF555_02930 IPR032305 GTP-binding protein, middle domain PF555_02930 IPR016496 GTPase HflX PF555_02930 IPR030394 HflX-type guanine nucleotide-binding (G) domain PF555_02940 IPR030871 Cardiolipin synthase C PF555_02940 IPR001736 Phospholipase D/Transphosphatidylase PF555_02940 IPR025202 Phospholipase D-like domain PF555_02945 IPR004843 Calcineurin-like phosphoesterase domain, ApaH type PF555_02945 IPR019546 Twin-arginine translocation pathway, signal sequence, bacterial/archaeal PF555_02945 IPR006311 Twin-arginine translocation pathway, signal sequence PF555_02945 IPR029052 Metallo-dependent phosphatase-like PF555_02950 IPR000498 Outer membrane protein OmpA-like, transmembrane domain PF555_02950 IPR006690 Outer membrane protein, OmpA-like, conserved site PF555_02950 IPR006665 OmpA-like domain PF555_02950 IPR002368 Outer membrane protein, OmpA PF555_02950 IPR006664 Outer membrane protein, bacterial PF555_02950 IPR036737 OmpA-like domain superfamily PF555_02950 IPR011250 Outer membrane protein/outer membrane enzyme PagP, beta-barrel PF555_02955 IPR003660 HAMP domain PF555_02955 IPR029787 Nucleotide cyclase PF555_02955 IPR000160 GGDEF domain PF555_02955 IPR033417 Periplasmic sensor domain CHASE8 PF555_02990 IPR006258 Dihydrolipoamide dehydrogenase PF555_02990 IPR023753 FAD/NAD(P)-binding domain PF555_02990 IPR036188 FAD/NAD(P)-binding domain superfamily PF555_02990 IPR012999 Pyridine nucleotide-disulphide oxidoreductase, class I, active site PF555_02990 IPR016156 FAD/NAD-linked reductase, dimerisation domain superfamily PF555_02990 IPR001100 Pyridine nucleotide-disulphide oxidoreductase, class I PF555_02990 IPR004099 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain PF555_03000 IPR005939 Beta-lactamase hydrolase-like PF555_03000 IPR001279 Metallo-beta-lactamase PF555_03000 IPR029021 Protein-tyrosine phosphatase-like PF555_03000 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like PF555_03005 IPR000073 Alpha/beta hydrolase fold-1 PF555_03005 IPR029058 Alpha/Beta hydrolase fold PF555_03010 IPR005746 Thioredoxin PF555_03010 IPR013766 Thioredoxin domain PF555_03010 IPR017937 Thioredoxin, conserved site PF555_03010 IPR036249 Thioredoxin-like superfamily PF555_03015 IPR006683 Thioesterase domain PF555_03015 IPR040170 Cytosolic acyl coenzyme A thioester hydrolase PF555_03015 IPR029069 HotDog domain superfamily PF555_03015 IPR033120 Hotdog acyl-CoA thioesterase (ACOT)-type domain PF555_03025 IPR035570 UPF0234, N-terminal PF555_03025 IPR035571 UPF0234-like, C-terminal PF555_03025 IPR007551 Protein of unknown function DUF520 PF555_03025 IPR036183 YajQ-like superfamily PF555_03035 IPR008471 MnmC-like methyltransferase PF555_03035 IPR036188 FAD/NAD(P)-binding domain superfamily PF555_03035 IPR006076 FAD dependent oxidoreductase PF555_03035 IPR017610 tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal PF555_03035 IPR023032 tRNA 5-methylaminomethyl-2-thiouridine biosynthesis bifunctional protein MnmC PF555_03045 IPR011008 Dimeric alpha-beta barrel PF555_03045 IPR005545 YCII-related PF555_03050 IPR006008 Intracellular septation protein A PF555_03055 IPR003141 Polymerase/histidinol phosphatase, N-terminal PF555_03055 IPR016195 Polymerase/histidinol phosphatase-like PF555_03055 IPR004013 PHP domain PF555_03060 IPR021134 Bestrophin/UPF0187 PF555_03065 IPR037518 MPN domain PF555_03065 IPR025657 RadC-like JAB domain PF555_03065 IPR010994 RuvA domain 2-like PF555_03065 IPR001405 Uncharacterised protein family UPF0758 PF555_03070 IPR035929 CoaB-like superfamily PF555_03070 IPR005252 Coenzyme A biosynthesis bifunctional protein CoaBC PF555_03070 IPR003382 Flavoprotein PF555_03070 IPR007085 DNA/pantothenate metabolism flavoprotein, C-terminal PF555_03070 IPR036551 Flavin prenyltransferase-like PF555_03075 IPR022813 Protein-export membrane protein SecD/SecF, archaeal and bacterial PF555_03075 IPR022645 Protein-export membrane protein SecD/SecF, bacterial PF555_03075 IPR022646 Protein-export membrane protein SecD/SecF/SecDF, conserved site PF555_03075 IPR005665 Protein-export membrane protein SecF, bacterial PF555_03080 IPR005791 Protein translocase subunit SecD PF555_03080 IPR027398 SecD export protein N-terminal TM domain PF555_03080 IPR022813 Protein-export membrane protein SecD/SecF, archaeal and bacterial PF555_03080 IPR022645 Protein-export membrane protein SecD/SecF, bacterial PF555_03080 IPR022646 Protein-export membrane protein SecD/SecF/SecDF, conserved site PF555_03085 IPR003849 Preprotein translocase YajC PF555_03090 IPR004803 tRNA-guanine transglycosylase PF555_03090 IPR036511 Queuine tRNA-ribosyltransferase-like PF555_03090 IPR002616 tRNA-guanine(15) transglycosylase-like PF555_03105 IPR036100 S-adenosylmethionine:tRNA ribosyltransferase-isomerase, QueA superfamily PF555_03105 IPR042118 QueA, domain 1 PF555_03105 IPR042119 QueA, domain 2 PF555_03105 IPR003699 S-adenosylmethionine:tRNA ribosyltransferase-isomerase, QueA PF555_03115 IPR036249 Thioredoxin-like superfamily PF555_03115 IPR004358 Signal transduction histidine kinase-related protein, C-terminal PF555_03115 IPR003594 Histidine kinase/HSP90-like ATPase PF555_03115 IPR036890 Histidine kinase/HSP90-like ATPase superfamily PF555_03115 IPR005467 Histidine kinase domain PF555_03115 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain PF555_03115 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily PF555_03115 IPR023527 Adaptive-response sensory-kinase SasA PF555_03115 IPR011649 KaiB domain PF555_03120 IPR013546 PII-uridylyltransferase/Glutamine-synthetase adenylyltransferase PF555_03120 IPR005190 Glutamate-ammonia ligase adenylyltransferase, repeated domain PF555_03120 IPR023057 Bifunctional glutamine synthetase adenylyltransferase/adenylyl-removing enzyme PF555_03125 IPR001544 Aminotransferase class IV PF555_03125 IPR033939 Branched-chain aminotransferase PF555_03125 IPR005785 Branched-chain amino acid aminotransferase I PF555_03125 IPR018300 Aminotransferase, class IV, conserved site PF555_03125 IPR036038 Aminotransferase-like, PLP-dependent enzymes PF555_03140 IPR002509 NodB homology domain PF555_03140 IPR011330 Glycoside hydrolase/deacetylase, beta/alpha-barrel PF555_03145 IPR029044 Nucleotide-diphospho-sugar transferases PF555_03145 IPR001173 Glycosyltransferase 2-like PF555_03150 IPR001296 Glycosyl transferase, family 1 PF555_03150 IPR028098 Glycosyltransferase subfamily 4-like, N-terminal domain PF555_03175 IPR031358 Stealth protein CR1, conserved region 1 PF555_03175 IPR021520 Stealth protein CR2, conserved region 2 PF555_03175 IPR031357 Stealth protein CR3, conserved region 3 PF555_03180 IPR012340 Nucleic acid-binding, OB-fold PF555_03180 IPR004365 OB-fold nucleic acid binding domain, AA-tRNA synthetase-type PF555_03180 IPR029351 GAD domain PF555_03180 IPR004115 GAD-like domain superfamily PF555_03180 IPR006195 Aminoacyl-tRNA synthetase, class II PF555_03180 IPR004524 Aspartate-tRNA ligase, type 1 PF555_03180 IPR004364 Aminoacyl-tRNA synthetase, class II (D/K/N) PF555_03180 IPR002312 Aspartyl/Asparaginyl-tRNA synthetase, class IIb PF555_03190 IPR012910 TonB-dependent receptor, plug domain PF555_03190 IPR000531 TonB-dependent receptor-like, beta-barrel PF555_03190 IPR039426 Vitamin B12 transporter BtuB-like PF555_03190 IPR037066 TonB-dependent receptor, plug domain superfamily PF555_03210 IPR009315 Phosphate-starvation-induced PsiE PF555_03210 IPR020948 Phosphate-starvation-induced PsiE-like PF555_03215 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal PF555_03215 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal PF555_03215 IPR037069 Acyl-CoA dehydrogenase/oxidase, N-terminal domain superfamily PF555_03215 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily PF555_03215 IPR006091 Acyl-CoA oxidase/dehydrogenase, central domain PF555_03215 IPR025878 Acetyl-CoA dehydrogenase-like C-terminal domain PF555_03215 IPR036250 Acyl-CoA dehydrogenase-like, C-terminal PF555_03220 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal PF555_03220 IPR037069 Acyl-CoA dehydrogenase/oxidase, N-terminal domain superfamily PF555_03220 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal PF555_03220 IPR036250 Acyl-CoA dehydrogenase-like, C-terminal PF555_03220 IPR006091 Acyl-CoA oxidase/dehydrogenase, central domain PF555_03220 IPR025878 Acetyl-CoA dehydrogenase-like C-terminal domain PF555_03220 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily PF555_03230 IPR003660 HAMP domain PF555_03230 IPR003594 Histidine kinase/HSP90-like ATPase PF555_03230 IPR036890 Histidine kinase/HSP90-like ATPase superfamily PF555_03230 IPR005467 Histidine kinase domain PF555_03230 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain PF555_03230 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily PF555_03230 IPR004358 Signal transduction histidine kinase-related protein, C-terminal PF555_03235 IPR011006 CheY-like superfamily PF555_03235 IPR001867 OmpR/PhoB-type DNA-binding domain PF555_03235 IPR016032 Signal transduction response regulator, C-terminal effector PF555_03235 IPR036388 Winged helix-like DNA-binding domain superfamily PF555_03235 IPR039420 Transcriptional regulatory protein WalR-like PF555_03235 IPR001789 Signal transduction response regulator, receiver domain PF555_03240 IPR003846 Protein adenylyltransferase SelO PF555_03260 IPR029499 ATP:cob(I)alamin adenosyltransferase, PduO-type PF555_03260 IPR016030 Cobalamin adenosyltransferase-like PF555_03260 IPR036451 Cobalamin adenosyltransferase-like superfamily PF555_03265 IPR010101 TonB-dependent vitamin B12 transporter BtuB PF555_03265 IPR037066 TonB-dependent receptor, plug domain superfamily PF555_03265 IPR000531 TonB-dependent receptor-like, beta-barrel PF555_03265 IPR010916 TonB box, conserved site PF555_03265 IPR036942 TonB-dependent receptor-like, beta-barrel domain superfamily PF555_03265 IPR010917 TonB-dependent receptor, conserved site PF555_03265 IPR039426 Vitamin B12 transporter BtuB-like PF555_03265 IPR012910 TonB-dependent receptor, plug domain PF555_03270 IPR013785 Aldolase-type TIM barrel PF555_03270 IPR001240 N-(5'phosphoribosyl) anthranilate isomerase (PRAI) PF555_03270 IPR011060 Ribulose-phosphate binding barrel PF555_03275 IPR006653 Tryptophan synthase, beta chain, conserved site PF555_03275 IPR036052 Tryptophan synthase beta subunit-like PLP-dependent enzyme PF555_03275 IPR023026 Tryptophan synthase beta chain/beta chain-like PF555_03275 IPR001926 Pyridoxal-phosphate dependent enzyme PF555_03275 IPR006654 Tryptophan synthase, beta chain PF555_03300 IPR002028 Tryptophan synthase, alpha chain PF555_03300 IPR011060 Ribulose-phosphate binding barrel PF555_03300 IPR013785 Aldolase-type TIM barrel PF555_03300 IPR018204 Tryptophan synthase, alpha chain, active site PF555_03305 IPR034733 Acetyl-CoA carboxylase PF555_03305 IPR000438 Acetyl-CoA carboxylase carboxyl transferase, beta subunit PF555_03305 IPR029045 ClpP/crotonase-like domain superfamily PF555_03305 IPR011762 Acetyl-coenzyme A carboxyltransferase, N-terminal PF555_03310 IPR036615 Mur ligase, C-terminal domain superfamily PF555_03310 IPR004101 Mur ligase, C-terminal PF555_03310 IPR036565 Mur-like, catalytic domain superfamily PF555_03310 IPR018109 Folylpolyglutamate synthetase, conserved site PF555_03310 IPR001645 Folylpolyglutamate synthetase PF555_03310 IPR013221 Mur ligase, central PF555_03325 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like PF555_03325 IPR001279 Metallo-beta-lactamase PF555_03330 IPR000866 Alkyl hydroperoxide reductase subunit C/ Thiol specific antioxidant PF555_03330 IPR024706 Peroxiredoxin, AhpC-type PF555_03330 IPR019479 Peroxiredoxin, C-terminal PF555_03330 IPR022915 Peroxiredoxin, TDXH subfamily PF555_03330 IPR036249 Thioredoxin-like superfamily PF555_03330 IPR013766 Thioredoxin domain PF555_03335 IPR000185 Protein translocase subunit SecA PF555_03335 IPR004027 SEC-C motif PF555_03335 IPR036670 SecA, preprotein cross-linking domain superfamily PF555_03335 IPR036266 SecA, Wing/Scaffold superfamily PF555_03335 IPR011116 SecA Wing/Scaffold PF555_03335 IPR011130 SecA, preprotein cross-linking domain PF555_03335 IPR014018 SecA motor DEAD PF555_03335 IPR011115 SecA DEAD-like, N-terminal PF555_03335 IPR020937 SecA conserved site PF555_03335 IPR027417 P-loop containing nucleoside triphosphate hydrolase PF555_03345 IPR011701 Major facilitator superfamily PF555_03345 IPR020846 Major facilitator superfamily domain PF555_03345 IPR005828 Major facilitator, sugar transporter-like PF555_03345 IPR004736 MFS transporter, metabolite:H symporter PF555_03345 IPR005829 Sugar transporter, conserved site PF555_03345 IPR036259 MFS transporter superfamily PF555_03350 IPR004254 AdipoR/Haemolysin-III-related PF555_03350 IPR005744 Hly-III PF555_03375 IPR006176 3-hydroxyacyl-CoA dehydrogenase, NAD binding PF555_03375 IPR036291 NAD(P)-binding domain superfamily PF555_03375 IPR029045 ClpP/crotonase-like domain superfamily PF555_03375 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily PF555_03375 IPR006108 3-hydroxyacyl-CoA dehydrogenase, C-terminal PF555_03375 IPR006180 3-hydroxyacyl-CoA dehydrogenase, conserved site PF555_03375 IPR012802 Fatty oxidation complex, alpha subunit FadJ PF555_03375 IPR001753 Enoyl-CoA hydratase/isomerase PF555_03380 IPR002155 Thiolase PF555_03380 IPR020616 Thiolase, N-terminal PF555_03380 IPR020613 Thiolase, conserved site PF555_03380 IPR020617 Thiolase, C-terminal PF555_03380 IPR020610 Thiolase, active site PF555_03380 IPR020615 Thiolase, acyl-enzyme intermediate active site PF555_03380 IPR016039 Thiolase-like PF555_03385 IPR009057 Homeobox-like domain superfamily PF555_03385 IPR037923 Transcription regulator HTH-like PF555_03385 IPR018060 DNA binding HTH domain, AraC-type PF555_03385 IPR020449 Transcription regulator HTH, AraC- type PF555_03385 IPR003313 AraC-type arabinose-binding/dimerisation domain PF555_03385 IPR018062 HTH domain AraC-type, conserved site PF555_03390 IPR003673 CoA-transferase family III PF555_03390 IPR023606 CoA-transferase family III domain superfamily PF555_03395 IPR007049 Carbohydrate-selective porin OprB PF555_03395 IPR038673 Carbohydrate-selective porin OprB superfamily PF555_03400 IPR018391 Pyrrolo-quinoline quinone beta-propeller repeat PF555_03400 IPR017511 PQQ-dependent membrane bound dehydrogenase PF555_03400 IPR002372 Pyrrolo-quinoline quinone repeat PF555_03400 IPR011047 Quinoprotein alcohol dehydrogenase-like superfamily PF555_03400 IPR001479 Quinoprotein dehydrogenase, conserved site PF555_03405 IPR006066 Nitrite/sulphite reductase iron-sulphur/sirohaem-binding site PF555_03405 IPR005117 Nitrite/Sulfite reductase ferredoxin-like domain PF555_03405 IPR006067 Nitrite/sulphite reductase 4Fe-4S domain PF555_03405 IPR036136 Nitrite/Sulfite reductase ferredoxin-like domain superfamily PF555_03415 IPR000390 Small multidrug resistance protein family PF555_03425 IPR020616 Thiolase, N-terminal PF555_03425 IPR002155 Thiolase PF555_03425 IPR016039 Thiolase-like PF555_03425 IPR020613 Thiolase, conserved site PF555_03425 IPR020615 Thiolase, acyl-enzyme intermediate active site PF555_03425 IPR020610 Thiolase, active site PF555_03425 IPR020617 Thiolase, C-terminal PF555_03435 IPR027385 Outer membrane protein beta-barrel domain PF555_03435 IPR006664 Outer membrane protein, bacterial PF555_03435 IPR006665 OmpA-like domain PF555_03435 IPR036737 OmpA-like domain superfamily PF555_03435 IPR011250 Outer membrane protein/outer membrane enzyme PagP, beta-barrel PF555_03445 IPR001233 tRNA-splicing ligase, RtcB PF555_03445 IPR036025 tRNA-splicing ligase RtcB-like superfamily PF555_03450 IPR004841 Amino acid permease/ SLC12A domain PF555_03450 IPR004840 Amino acid permease, conserved site PF555_03455 IPR023543 rRNA small subunit methyltransferase C PF555_03455 IPR007848 Methyltransferase small domain PF555_03455 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase PF555_03455 IPR013675 Methyltransferase small, N-terminal PF555_03455 IPR002052 DNA methylase, N-6 adenine-specific, conserved site PF555_03460 IPR006042 Xanthine/uracil permease PF555_03460 IPR006043 Xanthine/uracil/vitamin C permease PF555_03465 IPR000640 Elongation factor EFG, domain V-like PF555_03465 IPR004161 Translation elongation factor EFTu-like, domain 2 PF555_03465 IPR031157 Tr-type G domain, conserved site PF555_03465 IPR027417 P-loop containing nucleoside triphosphate hydrolase PF555_03465 IPR005225 Small GTP-binding protein domain PF555_03465 IPR000795 Transcription factor, GTP-binding domain PF555_03465 IPR009000 Translation protein, beta-barrel domain superfamily PF555_03465 IPR042116 GTP-binding protein TypA/BipA, C-terminal PF555_03465 IPR006298 GTP-binding protein TypA PF555_03465 IPR035651 BipA, domain V PF555_03465 IPR035647 EF-G domain III/V-like PF555_03470 IPR036019 Gated mechanosensitive channel PF555_03470 IPR019823 Large-conductance mechanosensitive channel, conserved site PF555_03470 IPR001185 Large-conductance mechanosensitive channel PF555_03470 IPR037673 Large-conductance mechanosensitive channel/anditomin synthesis protein L PF555_03480 IPR023059 Foldase protein PrsA PF555_03480 IPR000297 Peptidyl-prolyl cis-trans isomerase, PpiC-type PF555_03480 IPR023058 Peptidyl-prolyl cis-trans isomerase, PpiC-type, conserved site PF555_03480 IPR027304 Trigger factor/SurA domain superfamily PF555_03485 IPR015886 DNA glycosylase/AP lyase, H2TH DNA-binding PF555_03485 IPR020629 Formamidopyrimidine-DNA glycosylase PF555_03485 IPR012319 Formamidopyrimidine-DNA glycosylase, catalytic domain PF555_03485 IPR035937 MutM-like, N-terminal PF555_03485 IPR010979 Ribosomal protein S13-like, H2TH PF555_03485 IPR000214 Zinc finger, DNA glycosylase/AP lyase-type PF555_03485 IPR010663 Zinc finger, FPG/IleRS-type PF555_03490 IPR003180 Methylpurine-DNA glycosylase PF555_03490 IPR036995 Methylpurine-DNA glycosylase superfamily PF555_03490 IPR011034 Formyl transferase-like, C-terminal domain superfamily PF555_03495 IPR039426 Vitamin B12 transporter BtuB-like PF555_03495 IPR012910 TonB-dependent receptor, plug domain PF555_03495 IPR037066 TonB-dependent receptor, plug domain superfamily PF555_03495 IPR000531 TonB-dependent receptor-like, beta-barrel PF555_03495 IPR036942 TonB-dependent receptor-like, beta-barrel domain superfamily PF555_03495 IPR010105 TonB-dependent siderophore receptor PF555_03500 IPR023663 NADPH dehydrogenase PF555_03500 IPR013785 Aldolase-type TIM barrel PF555_03500 IPR001155 NADH:flavin oxidoreductase/NADH oxidase, N-terminal PF555_03515 IPR033954 Disulphide bond isomerase, DsbC/G PF555_03515 IPR018950 Disulphide bond isomerase, DsbC/G, N-terminal PF555_03515 IPR009094 Disulphide bond isomerase DsbC/G, N-terminal domain superfamily PF555_03515 IPR012336 Thioredoxin-like fold PF555_03515 IPR036249 Thioredoxin-like superfamily PF555_03515 IPR017937 Thioredoxin, conserved site PF555_03520 IPR017703 YgfZ/GcvT conserved site PF555_03520 IPR029043 Glycine cleavage T-protein/YgfZ, C-terminal PF555_03520 IPR006222 Aminomethyltransferase, folate-binding domain PF555_03520 IPR028896 Aminomethyltransferase-like PF555_03530 IPR007438 Protein of unknown function DUF488 PF555_03535 IPR004624 PhnA protein PF555_03535 IPR013988 PhnA protein, C-terminal PF555_03535 IPR013987 PhnA protein, N-terminal PF555_03540 IPR036913 YegP-like superfamily PF555_03540 IPR010879 Domain of unknown function DUF1508 PF555_03545 IPR007214 YbaK/aminoacyl-tRNA synthetase-associated domain PF555_03545 IPR002314 Aminoacyl-tRNA synthetase, class II (G/ P/ S/T) PF555_03545 IPR006195 Aminoacyl-tRNA synthetase, class II PF555_03545 IPR004154 Anticodon-binding PF555_03545 IPR036621 Anticodon-binding domain superfamily PF555_03545 IPR002316 Proline-tRNA ligase, class IIa PF555_03545 IPR004500 Prolyl-tRNA synthetase, class IIa, bacterial-type PF555_03545 IPR023717 Prolyl-tRNA synthetase, class IIa, type 1 PF555_03545 IPR033730 Prokaryote proline-tRNA ligase core domain PF555_03545 IPR036754 YbaK/aminoacyl-tRNA synthetase-associated domain superfamily PF555_03550 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains PF555_03550 IPR001036 Acriflavin resistance protein PF555_03565 IPR001789 Signal transduction response regulator, receiver domain PF555_03565 IPR011006 CheY-like superfamily PF555_03570 IPR011006 CheY-like superfamily PF555_03570 IPR001789 Signal transduction response regulator, receiver domain PF555_03575 IPR039315 Chemotaxis protein CheW PF555_03575 IPR036061 CheW-like domain superfamily PF555_03575 IPR002545 CheW-like domain PF555_03580 IPR004090 Chemotaxis methyl-accepting receptor PF555_03580 IPR003660 HAMP domain PF555_03580 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain PF555_03580 IPR029095 NarX-like, N-terminal PF555_03585 IPR004358 Signal transduction histidine kinase-related protein, C-terminal PF555_03585 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain PF555_03585 IPR001789 Signal transduction response regulator, receiver domain PF555_03585 IPR036641 HPT domain superfamily PF555_03585 IPR036890 Histidine kinase/HSP90-like ATPase superfamily PF555_03585 IPR003594 Histidine kinase/HSP90-like ATPase PF555_03585 IPR011006 CheY-like superfamily PF555_03585 IPR002545 CheW-like domain PF555_03585 IPR036061 CheW-like domain superfamily PF555_03585 IPR005467 Histidine kinase domain PF555_03595 IPR011650 Peptidase M20, dimerisation domain PF555_03595 IPR002933 Peptidase M20 PF555_03595 IPR036264 Bacterial exopeptidase dimerisation domain PF555_03595 IPR005941 Succinyl-diaminopimelate desuccinylase, proteobacteria PF555_03600 IPR012556 Entericidin A/B PF555_03610 IPR007401 Protein of unknown function DUF454 PF555_03615 IPR041597 L,D-transpeptidase C-terminal domain PF555_03615 IPR005490 L,D-transpeptidase catalytic domain PF555_03615 IPR038063 L,D-transpeptidase catalytic domain-like PF555_03655 IPR029039 Flavoprotein-like superfamily PF555_03655 IPR003097 Sulfite reductase [NADPH] flavoprotein alpha-component-like, FAD-binding PF555_03655 IPR029758 Sulphite reductase [NADPH] flavoprotein, alpha chain, Proteobacteria PF555_03655 IPR017927 FAD-binding domain, ferredoxin reductase-type PF555_03655 IPR001094 Flavodoxin-like PF555_03655 IPR008254 Flavodoxin/nitric oxide synthase PF555_03655 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase PF555_03655 IPR039261 Ferredoxin-NADP reductase (FNR), nucleotide-binding domain PF555_03655 IPR023173 NADPH-cytochrome p450 reductase, FAD-binding, alpha-helical domain superfamily PF555_03655 IPR001433 Oxidoreductase FAD/NAD(P)-binding PF555_03655 IPR017938 Riboflavin synthase-like beta-barrel PF555_03655 IPR010199 Sulphite reductase [NADPH] flavoprotein, alpha chain PF555_03665 IPR032692 Integral membrane protein YccS, N-terminal PF555_03665 IPR010019 Integral membrane protein, YccS PF555_03665 IPR010020 Integral membrane protein, YccS/YhfK PF555_03670 IPR036259 MFS transporter superfamily PF555_03670 IPR004734 Multidrug resistance protein PF555_03670 IPR011701 Major facilitator superfamily PF555_03670 IPR020846 Major facilitator superfamily domain PF555_03670 IPR004812 Drug resistance transporter Bcr/CmlA subfamily PF555_03675 IPR029479 Nitroreductase PF555_03675 IPR000415 Nitroreductase-like PF555_03690 IPR001463 Sodium:alanine symporter PF555_03695 IPR002641 Patatin-like phospholipase domain PF555_03695 IPR001423 Lysophospholipase patatin, conserved site PF555_03695 IPR016035 Acyl transferase/acyl hydrolase/lysophospholipase PF555_03700 IPR001926 Pyridoxal-phosphate dependent enzyme PF555_03700 IPR000634 Serine/threonine dehydratase, pyridoxal-phosphate-binding site PF555_03700 IPR005789 Threonine dehydratase, catabolic PF555_03700 IPR036052 Tryptophan synthase beta subunit-like PLP-dependent enzyme PF555_03700 IPR002912 ACT domain PF555_03705 IPR036640 ABC transporter type 1, transmembrane domain superfamily PF555_03705 IPR009248 SbmA/BacA-like PF555_03730 IPR014746 Glutamine synthetase/guanido kinase, catalytic domain PF555_03730 IPR017958 Glutamyl-tRNA(Gln) amidotransferase, subunit B, conserved site PF555_03730 IPR023168 Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase, C-terminal, domain 2 PF555_03730 IPR042114 Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase, C-terminal, domain 1 PF555_03730 IPR018027 Asn/Gln amidotransferase PF555_03730 IPR006075 Aspartyl/Glutamyl-tRNA(Gln) amidotransferase, subunit B/E, catalytic PF555_03730 IPR004413 Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase, B subunit PF555_03730 IPR003789 Aspartyl/glutamyl-tRNA amidotransferase subunit B-like PF555_03730 IPR017959 Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase, subunit B /E PF555_03735 IPR000120 Amidase PF555_03735 IPR020556 Amidase, conserved site PF555_03735 IPR023631 Amidase signature domain PF555_03735 IPR036928 Amidase signature (AS) superfamily PF555_03735 IPR004412 Glutamyl-tRNA(Gln) amidotransferase A subunit PF555_03740 IPR036113 Glu-tRNAGln amidotransferase superfamily, subunit C PF555_03740 IPR003837 Glu-tRNAGln amidotransferase C subunit PF555_03745 IPR004753 Cell shape determining protein MreB PF555_03750 IPR042177 Cell/Rod shape-determining protein MreC, domain 1 PF555_03750 IPR042175 Cell/Rod shape-determining protein MreC, domain 2 PF555_03750 IPR007221 Rod shape-determining protein MreC PF555_03755 IPR026034 Cell shape-determining protein MreD, proteobacterial type PF555_03755 IPR007227 Cell shape-determining protein MreD PF555_03760 IPR029001 Inosine triphosphate pyrophosphatase-like PF555_03760 IPR003697 Nucleoside triphosphate pyrophosphatase Maf-like protein PF555_03765 IPR012340 Nucleic acid-binding, OB-fold PF555_03765 IPR019307 RNA-binding protein AU-1/Ribonuclease E/G PF555_03765 IPR004659 Ribonuclease E/G PF555_03765 IPR022967 RNA-binding domain, S1 PF555_03765 IPR003029 S1 domain PF555_03775 IPR014292 Acyltransferase, WS/DGAT/MGAT PF555_03775 IPR009721 O-acyltransferase WSD1, C-terminal PF555_03775 IPR004255 O-acyltransferase, WSD1, N-terminal PF555_03780 IPR011798 Adenosine 5'-phosphosulphate reductase PF555_03780 IPR004511 Phosphoadenosine phosphosulphate/adenosine 5'-phosphosulphate reductase PF555_03780 IPR002500 Phosphoadenosine phosphosulphate reductase PF555_03780 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold PF555_03785 IPR036412 HAD-like superfamily PF555_03785 IPR023214 HAD superfamily PF555_03785 IPR011863 Phosphoserine phosphatase/homoserine phosphotransferase bifunctional protein PF555_03795 IPR003680 Flavodoxin-like fold PF555_03795 IPR029039 Flavoprotein-like superfamily PF555_03815 IPR003824 Undecaprenyl-diphosphatase UppP PF555_03820 IPR009594 Transcription regulator HTH, AraC, N-terminal PF555_03820 IPR009057 Homeobox-like domain superfamily PF555_03820 IPR018060 DNA binding HTH domain, AraC-type PF555_03825 IPR020841 Polyketide synthase, beta-ketoacyl synthase domain PF555_03825 IPR020807 Polyketide synthase, dehydratase domain PF555_03825 IPR042104 Polyketide synthase, dehydratase domain superfamily PF555_03825 IPR020843 Polyketide synthase, enoylreductase domain PF555_03825 IPR013968 Polyketide synthase, ketoreductase domain PF555_03825 IPR014031 Beta-ketoacyl synthase, C-terminal PF555_03825 IPR015083 Polyketide synthase, docking domain PF555_03825 IPR032821 Ketoacyl-synthetase, C-terminal extension PF555_03825 IPR009081 Phosphopantetheine binding ACP domain PF555_03825 IPR006162 Phosphopantetheine attachment site PF555_03825 IPR016039 Thiolase-like PF555_03825 IPR020806 Polyketide synthase, phosphopantetheine-binding domain PF555_03825 IPR036291 NAD(P)-binding domain superfamily PF555_03825 IPR016036 Malonyl-CoA ACP transacylase, ACP-binding PF555_03825 IPR036736 ACP-like superfamily PF555_03825 IPR018201 Beta-ketoacyl synthase, active site PF555_03825 IPR011032 GroES-like superfamily PF555_03825 IPR015357 Erythronolide synthase, docking PF555_03825 IPR036347 Erythronolide synthase, docking domain superfamily PF555_03825 IPR013154 Alcohol dehydrogenase, N-terminal PF555_03825 IPR016035 Acyl transferase/acyl hydrolase/lysophospholipase PF555_03825 IPR014043 Acyl transferase PF555_03825 IPR014030 Beta-ketoacyl synthase, N-terminal PF555_03825 IPR001227 Acyl transferase domain superfamily PF555_03830 IPR017283 Protein/nucleic acid deglycase HchA PF555_03830 IPR002818 DJ-1/PfpI PF555_03830 IPR029062 Class I glutamine amidotransferase-like PF555_03865 IPR004841 Amino acid permease/ SLC12A domain PF555_03865 IPR004840 Amino acid permease, conserved site PF555_03870 IPR007400 PrpF protein PF555_03870 IPR012709 2-methyl-aconitate isomerase PrpF PF555_03875 IPR033749 Polyprenyl synthetase, conserved site PF555_03875 IPR000092 Polyprenyl synthetase PF555_03875 IPR008949 Isoprenoid synthase domain superfamily PF555_03880 IPR038056 YjbR-like superfamily PF555_03880 IPR007351 Uncharacterised protein YjbR PF555_03885 IPR001972 Stomatin family PF555_03885 IPR018080 Band 7/stomatin-like, conserved site PF555_03885 IPR036013 Band 7/SPFH domain superfamily PF555_03885 IPR001107 Band 7 domain PF555_03895 IPR002641 Patatin-like phospholipase domain PF555_03895 IPR016035 Acyl transferase/acyl hydrolase/lysophospholipase PF555_03895 IPR001423 Lysophospholipase patatin, conserved site PF555_03910 IPR009057 Homeobox-like domain superfamily PF555_03920 IPR024463 Transposase TnpC, homeodomain PF555_03920 IPR004291 Transposase, IS66 PF555_03920 IPR024474 Zinc-finger binding domain of transposase IS66 PF555_03920 IPR039552 Transposase IS66, C-terminal PF555_03935 IPR024463 Transposase TnpC, homeodomain PF555_03935 IPR024474 Zinc-finger binding domain of transposase IS66 PF555_03935 IPR039552 Transposase IS66, C-terminal PF555_03935 IPR004291 Transposase, IS66 PF555_03945 IPR009057 Homeobox-like domain superfamily PF555_03955 IPR011006 CheY-like superfamily PF555_03955 IPR001867 OmpR/PhoB-type DNA-binding domain PF555_03955 IPR001789 Signal transduction response regulator, receiver domain PF555_03955 IPR039420 Transcriptional regulatory protein WalR-like PF555_03955 IPR036388 Winged helix-like DNA-binding domain superfamily PF555_03960 IPR004358 Signal transduction histidine kinase-related protein, C-terminal PF555_03960 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily PF555_03960 IPR005467 Histidine kinase domain PF555_03960 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain PF555_03960 IPR003594 Histidine kinase/HSP90-like ATPase PF555_03960 IPR003660 HAMP domain PF555_03960 IPR013727 Two-component sensor kinase, N-terminal PF555_03960 IPR036890 Histidine kinase/HSP90-like ATPase superfamily PF555_03970 IPR029020 Ammonium/urea transporter PF555_03970 IPR001905 Ammonium transporter PF555_03970 IPR018047 Ammonium transporter, conserved site PF555_03970 IPR024041 Ammonium transporter AmtB-like domain PF555_03975 IPR005119 LysR, substrate-binding PF555_03975 IPR000847 Transcription regulator HTH, LysR PF555_03975 IPR036388 Winged helix-like DNA-binding domain superfamily PF555_03975 IPR036390 Winged helix DNA-binding domain superfamily PF555_03990 IPR041698 Methyltransferase domain 25 PF555_03990 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase PF555_03990 IPR005271 Carboxy-S-adenosyl-L-methionine synthase PF555_03995 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site PF555_03995 IPR002300 Aminoacyl-tRNA synthetase, class Ia PF555_03995 IPR033705 Valyl tRNA synthetase, anticodon-binding domain PF555_03995 IPR013155 Methionyl/Valyl/Leucyl/Isoleucyl-tRNA synthetase, anticodon-binding PF555_03995 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold PF555_03995 IPR010978 Class I and II aminoacyl-tRNA synthetase, tRNA-binding arm PF555_03995 IPR009080 Aminoacyl-tRNA synthetase, class Ia, anticodon-binding PF555_03995 IPR037118 Valyl-tRNA synthetase, tRNA-binding arm superfamily PF555_03995 IPR019499 Valyl-tRNA synthetase, tRNA-binding arm PF555_03995 IPR009008 Valyl/Leucyl/Isoleucyl-tRNA synthetase, editing domain PF555_03995 IPR002303 Valine-tRNA ligase PF555_04005 IPR011284 3-oxoacyl-(acyl-carrier-protein) reductase PF555_04005 IPR002347 Short-chain dehydrogenase/reductase SDR PF555_04005 IPR020904 Short-chain dehydrogenase/reductase, conserved site PF555_04005 IPR036291 NAD(P)-binding domain superfamily PF555_04015 IPR002765 Uncharacterised protein family UPF0145 PF555_04015 IPR035439 UPF0145 domain superfamily PF555_04020 IPR002765 Uncharacterised protein family UPF0145 PF555_04020 IPR035439 UPF0145 domain superfamily PF555_04025 IPR003423 Outer membrane efflux protein PF555_04025 IPR010131 RND efflux system, outer membrane lipoprotein, NodT PF555_04030 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains PF555_04030 IPR001036 Acriflavin resistance protein PF555_04030 IPR004764 Hydrophobe/amphiphile efflux-1 HAE1 PF555_04035 IPR032317 RND efflux pump, membrane fusion protein, barrel-sandwich domain PF555_04035 IPR006143 RND efflux pump, membrane fusion protein PF555_04040 IPR000326 Phosphatidic acid phosphatase type 2/haloperoxidase PF555_04040 IPR036938 Phosphatidic acid phosphatase type 2/haloperoxidase superfamily PF555_04050 IPR008949 Isoprenoid synthase domain superfamily PF555_04050 IPR000092 Polyprenyl synthetase PF555_04050 IPR033749 Polyprenyl synthetase, conserved site PF555_04060 IPR036164 L21-like superfamily PF555_04060 IPR028909 Ribosomal protein L21-like PF555_04060 IPR001787 Ribosomal protein L21 PF555_04060 IPR018258 Ribosomal protein L21, conserved site PF555_04065 IPR001684 Ribosomal protein L27 PF555_04065 IPR018261 Ribosomal protein L27, conserved site PF555_04070 IPR018323 Outer membrane lipoprotein carrier protein LolA, Proteobacteria PF555_04070 IPR004564 Outer membrane lipoprotein carrier protein LolA-like PF555_04070 IPR029046 Lipoprotein localisation LolA/LolB/LppX PF555_04080 IPR002314 Aminoacyl-tRNA synthetase, class II (G/ P/ S/T) PF555_04080 IPR006195 Aminoacyl-tRNA synthetase, class II PF555_04080 IPR002317 Serine-tRNA ligase, type1 PF555_04080 IPR015866 Serine-tRNA synthetase, type1, N-terminal PF555_04080 IPR042103 Serine-tRNA synthetase, type1, N-terminal domain superfamily PF555_04080 IPR033729 Serine-tRNA ligase catalytic core domain PF555_04080 IPR010978 Class I and II aminoacyl-tRNA synthetase, tRNA-binding arm PF555_04085 IPR003043 Uroporphiryn-III C-methyltransferase, conserved site PF555_04085 IPR006367 Sirohaem synthase, N-terminal PF555_04085 IPR019478 Sirohaem synthase, dimerisation domain PF555_04085 IPR028281 Siroheme synthase, central domain PF555_04085 IPR012409 Sirohaem synthase PF555_04085 IPR037115 Sirohaem synthase, dimerisation domain superfamily PF555_04085 IPR014777 Tetrapyrrole methylase, subdomain 1 PF555_04085 IPR006366 Uroporphyrin-III C-methyltransferase PF555_04085 IPR014776 Tetrapyrrole methylase, subdomain 2 PF555_04085 IPR035996 Tetrapyrrole methylase superfamily PF555_04085 IPR000878 Tetrapyrrole methylase PF555_04085 IPR036291 NAD(P)-binding domain superfamily PF555_04090 IPR029026 tRNA (guanine-N1-)-methyltransferase, N-terminal PF555_04090 IPR016914 tRNA (cytidine/uridine-2'-O-)-methyltransferase PF555_04090 IPR001537 tRNA/rRNA methyltransferase, SpoU type PF555_04090 IPR029028 Alpha/beta knot methyltransferases PF555_04095 IPR002577 Helix-turn-helix, HxlR type PF555_04095 IPR036388 Winged helix-like DNA-binding domain superfamily PF555_04095 IPR036390 Winged helix DNA-binding domain superfamily PF555_04100 IPR008254 Flavodoxin/nitric oxide synthase PF555_04100 IPR029039 Flavoprotein-like superfamily PF555_04100 IPR005025 NADPH-dependent FMN reductase-like PF555_04105 IPR002293 Amino acid/polyamine transporter I PF555_04110 IPR001670 Alcohol dehydrogenase, iron-type/glycerol dehydrogenase GldA PF555_04110 IPR018211 Alcohol dehydrogenase, iron-type, conserved site PF555_04110 IPR039697 Iron-type alcohol dehydrogenase-like PF555_04120 IPR020605 Octanoyltransferase, conserved site PF555_04120 IPR004143 Biotinyl protein ligase (BPL) and lipoyl protein ligase (LPL), catalytic domain PF555_04120 IPR000544 Octanoyltransferase PF555_04125 IPR007454 Uncharacterised protein family UPF0250 PF555_04125 IPR027471 YbeD-like domain superfamily PF555_04130 IPR042189 Sigma-70 factor, region 1.1 superfamily PF555_04130 IPR036388 Winged helix-like DNA-binding domain superfamily PF555_04130 IPR028630 RNA polymerase sigma factor RpoD PF555_04130 IPR012760 RNA polymerase sigma factor RpoD, C-terminal PF555_04130 IPR013324 RNA polymerase sigma factor, region 3/4-like PF555_04130 IPR013325 RNA polymerase sigma factor, region 2 PF555_04130 IPR007127 RNA polymerase sigma factor 70, region 1.1 PF555_04130 IPR007630 RNA polymerase sigma-70 region 4 PF555_04130 IPR007624 RNA polymerase sigma-70 region 3 PF555_04130 IPR007627 RNA polymerase sigma-70 region 2 PF555_04130 IPR009042 RNA polymerase sigma-70 region 1.2 PF555_04130 IPR000943 RNA polymerase sigma-70 PF555_04130 IPR014284 RNA polymerase sigma-70 like domain PF555_04130 IPR007631 RNA polymerase sigma factor 70, non-essential domain PF555_04150 IPR036873 Rhodanese-like domain superfamily PF555_04150 IPR020936 Uncharacterised protein family UPF0176 PF555_04150 IPR040503 UPF0176, acylphosphatase-like domain PF555_04150 IPR001763 Rhodanese-like domain PF555_04160 IPR024176 Citrate synthase, bacterial-type PF555_04160 IPR019810 Citrate synthase active site PF555_04160 IPR002020 Citrate synthase PF555_04160 IPR016143 Citrate synthase-like, small alpha subdomain PF555_04160 IPR016142 Citrate synthase-like, large alpha subdomain PF555_04160 IPR010953 Citrate synthase, type I PF555_04160 IPR036969 Citrate synthase superfamily PF555_04165 IPR034804 Fumarate reductase/succinate dehydrogenase, transmembrane subunit PF555_04165 IPR018495 Succinate dehydrogenase, cytochrome b subunit, conserved site PF555_04165 IPR014314 Succinate dehydrogenase, cytochrome b556 subunit PF555_04165 IPR000701 Succinate dehydrogenase/fumarate reductase type B, transmembrane subunit PF555_04170 IPR000701 Succinate dehydrogenase/fumarate reductase type B, transmembrane subunit PF555_04170 IPR034804 Fumarate reductase/succinate dehydrogenase, transmembrane subunit PF555_04170 IPR014312 Succinate dehydrogenase, hydrophobic membrane anchor PF555_04175 IPR036188 FAD/NAD(P)-binding domain superfamily PF555_04175 IPR003952 Fumarate reductase/succinate dehydrogenase, FAD-binding site PF555_04175 IPR037099 Fumarate reductase/succinate dehydrogenase flavoprotein-like, C-terminal domain superfamily PF555_04175 IPR015939 Fumarate reductase/succinate dehydrogenase flavoprotein-like, C-terminal PF555_04175 IPR027477 Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain superfamily PF555_04175 IPR011281 Succinate dehydrogenase, flavoprotein subunit PF555_04175 IPR003953 FAD-dependent oxidoreductase 2, FAD binding domain PF555_04175 IPR014006 Succinate dehydrogenase/fumarate reductase, flavoprotein subunit PF555_04180 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site PF555_04180 IPR036010 2Fe-2S ferredoxin-like superfamily PF555_04180 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain PF555_04180 IPR012675 Beta-grasp domain superfamily PF555_04180 IPR009051 Alpha-helical ferredoxin PF555_04180 IPR004489 Succinate dehydrogenase/fumarate reductase iron-sulphur protein PF555_04180 IPR025192 Succinate dehydogenase/fumarate reductase N-terminal PF555_04180 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain PF555_04195 IPR042179 Multifunctional 2-oxoglutarate metabolism enzyme, C-terminal domain superfamily PF555_04195 IPR005475 Transketolase-like, pyrimidine-binding domain PF555_04195 IPR032106 2-oxoglutarate dehydrogenase E1 component, N-terminal domain PF555_04195 IPR011603 2-oxoglutarate dehydrogenase E1 component PF555_04195 IPR029061 Thiamin diphosphate-binding fold PF555_04195 IPR031717 Multifunctional 2-oxoglutarate metabolism enzyme, C-terminal PF555_04195 IPR001017 Dehydrogenase, E1 component PF555_04200 IPR001078 2-oxoacid dehydrogenase acyltransferase, catalytic domain PF555_04200 IPR011053 Single hybrid motif PF555_04200 IPR004167 Peripheral subunit-binding domain PF555_04200 IPR036625 E3-binding domain superfamily PF555_04200 IPR023213 Chloramphenicol acetyltransferase-like domain superfamily PF555_04200 IPR003016 2-oxo acid dehydrogenase, lipoyl-binding site PF555_04200 IPR006255 Dihydrolipoamide succinyltransferase PF555_04200 IPR000089 Biotin/lipoyl attachment PF555_04205 IPR016156 FAD/NAD-linked reductase, dimerisation domain superfamily PF555_04205 IPR036188 FAD/NAD(P)-binding domain superfamily PF555_04205 IPR006258 Dihydrolipoamide dehydrogenase PF555_04205 IPR012999 Pyridine nucleotide-disulphide oxidoreductase, class I, active site PF555_04205 IPR001100 Pyridine nucleotide-disulphide oxidoreductase, class I PF555_04205 IPR004099 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain PF555_04205 IPR023753 FAD/NAD(P)-binding domain PF555_04210 IPR011761 ATP-grasp fold PF555_04210 IPR013650 ATP-grasp fold, succinyl-CoA synthetase-type PF555_04210 IPR013815 ATP-grasp fold, subdomain 1 PF555_04210 IPR005811 ATP-citrate lyase/succinyl-CoA ligase PF555_04210 IPR017866 Succinyl-CoA synthetase, beta subunit, conserved site PF555_04210 IPR005809 Succinate--CoA synthetase, beta subunit PF555_04210 IPR016102 Succinyl-CoA synthetase-like PF555_04215 IPR017440 ATP-citrate lyase/succinyl-CoA ligase, active site PF555_04215 IPR036291 NAD(P)-binding domain superfamily PF555_04215 IPR016102 Succinyl-CoA synthetase-like PF555_04215 IPR005811 ATP-citrate lyase/succinyl-CoA ligase PF555_04215 IPR005810 Succinyl-CoA ligase, alpha subunit PF555_04215 IPR003781 CoA-binding PF555_04215 IPR033847 ATP-citrate lyase/succinyl-CoA ligase, conserved site PF555_04220 IPR002305 Aminoacyl-tRNA synthetase, class Ic PF555_04220 IPR002306 Tryptophan-tRNA ligase PF555_04220 IPR024109 Tryptophan-tRNA ligase, bacterial-type PF555_04220 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site PF555_04220 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold PF555_04225 IPR008526 Inner membrane protein YedI PF555_04230 IPR007343 Uncharacterised protein family, zinc metallopeptidase putative PF555_04235 IPR038770 Sodium/solute symporter superfamily PF555_04235 IPR018422 Cation/H+ exchanger, CPA1 family PF555_04235 IPR006153 Cation/H+ exchanger PF555_04250 IPR029052 Metallo-dependent phosphatase-like PF555_04250 IPR019079 Capsule synthesis protein, CapA PF555_04260 IPR036217 Methylated DNA-protein cysteine methyltransferase, DNA binding domain PF555_04260 IPR036388 Winged helix-like DNA-binding domain superfamily PF555_04260 IPR014048 Methylated-DNA-[protein]-cysteine S-methyltransferase, DNA binding PF555_04265 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold PF555_04265 IPR006015 Universal stress protein A family PF555_04265 IPR006016 UspA PF555_04270 IPR001451 Hexapeptide repeat PF555_04270 IPR018357 Hexapeptide transferase, conserved site PF555_04270 IPR011004 Trimeric LpxA-like superfamily PF555_04275 IPR036805 Transcription elongation factor, GreA/GreB, N-terminal domain superfamily PF555_04275 IPR023459 Transcription elongation factor GreA/GreB family PF555_04275 IPR001437 Transcription elongation factor, GreA/GreB, C-terminal PF555_04275 IPR022691 Transcription elongation factor, GreA/GreB, N-terminal PF555_04275 IPR036953 Transcription elongation factor GreA/GreB, C-terminal domain superfamily PF555_04275 IPR018151 Transcription elongation factor, GreA/GreB, conserved site PF555_04275 IPR006359 Transcription elongation factor GreA PF555_04275 IPR028624 Transcription elongation factor GreA/GreB PF555_04280 IPR011761 ATP-grasp fold PF555_04280 IPR006275 Carbamoyl-phosphate synthase, large subunit PF555_04280 IPR005480 Carbamoyl-phosphate synthetase, large subunit oligomerisation domain PF555_04280 IPR036897 Carbamoyl-phosphate synthetase, large subunit oligomerisation domain superfamily PF555_04280 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain PF555_04280 IPR005483 Carbamoyl-phosphate synthase large subunit, CPSase domain PF555_04280 IPR011607 Methylglyoxal synthase-like domain PF555_04280 IPR036914 Methylglyoxal synthase-like domain superfamily PF555_04280 IPR033937 Carbamoyl-phosphate synthase large chain, methylglyoxal synthase-like domain PF555_04280 IPR016185 Pre-ATP-grasp domain superfamily PF555_04285 IPR035686 Carbamoyl-phosphate synthase small subunit, GATase1 domain PF555_04285 IPR036480 Carbamoyl-phosphate synthase small subunit, N-terminal domain superfamily PF555_04285 IPR002474 Carbamoyl-phosphate synthase small subunit, N-terminal domain PF555_04285 IPR017926 Glutamine amidotransferase PF555_04285 IPR029062 Class I glutamine amidotransferase-like PF555_04285 IPR006274 Carbamoyl-phosphate synthase, small subunit PF555_04300 IPR035920 YhbY-like superfamily PF555_04300 IPR017924 RNA-binding protein YhbY PF555_04300 IPR001890 RNA-binding, CRM domain PF555_04305 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase PF555_04305 IPR015507 Ribosomal RNA large subunit methyltransferase E PF555_04305 IPR002877 Ribosomal RNA methyltransferase FtsJ domain PF555_04310 IPR003593 AAA+ ATPase domain PF555_04310 IPR041569 AAA ATPase, AAA+ lid domain PF555_04310 IPR003959 ATPase, AAA-type, core PF555_04310 IPR003960 ATPase, AAA-type, conserved site PF555_04310 IPR005936 Peptidase, FtsH PF555_04310 IPR027417 P-loop containing nucleoside triphosphate hydrolase PF555_04310 IPR011546 Peptidase M41, FtsH extracellular PF555_04310 IPR000642 Peptidase M41 PF555_04310 IPR037219 Peptidase M41-like PF555_04315 IPR011005 Dihydropteroate synthase-like PF555_04315 IPR000489 Pterin-binding domain PF555_04315 IPR006390 Dihydropteroate synthase PF555_04335 IPR018946 Alkaline phosphatase D-related PF555_04335 IPR038607 PhoD-like superfamily PF555_04335 IPR032093 Phospholipase D, N-terminal PF555_04335 IPR008963 Purple acid phosphatase-like, N-terminal PF555_04335 IPR006311 Twin-arginine translocation pathway, signal sequence PF555_04350 IPR020631 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain PF555_04350 IPR020630 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain PF555_04350 IPR000672 Tetrahydrofolate dehydrogenase/cyclohydrolase PF555_04350 IPR036291 NAD(P)-binding domain superfamily PF555_04350 IPR020867 Tetrahydrofolate dehydrogenase/cyclohydrolase, conserved site PF555_04355 IPR004498 Ribosomal protein L11 methyltransferase PF555_04355 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase PF555_04365 IPR020846 Major facilitator superfamily domain PF555_04365 IPR005828 Major facilitator, sugar transporter-like PF555_04365 IPR036259 MFS transporter superfamily PF555_04365 IPR004736 MFS transporter, metabolite:H symporter PF555_04365 IPR005829 Sugar transporter, conserved site PF555_04370 IPR018484 Carbohydrate kinase, FGGY, N-terminal PF555_04370 IPR005999 Glycerol kinase PF555_04370 IPR018485 Carbohydrate kinase, FGGY, C-terminal PF555_04370 IPR000577 Carbohydrate kinase, FGGY PF555_04370 IPR018483 Carbohydrate kinase, FGGY, conserved site PF555_04375 IPR031656 Alpha-glycerophosphate oxidase, C-terminal PF555_04375 IPR038299 Alpha-glycerophosphate oxidase, C-terminal domain superfamily PF555_04375 IPR006076 FAD dependent oxidoreductase PF555_04375 IPR036188 FAD/NAD(P)-binding domain superfamily PF555_04375 IPR000447 FAD-dependent glycerol-3-phosphate dehydrogenase PF555_04380 IPR018091 Phosphoenolpyruvate carboxykinase, GTP-utilising, conserved site PF555_04380 IPR013035 Phosphoenolpyruvate carboxykinase, C-terminal PF555_04380 IPR008209 Phosphoenolpyruvate carboxykinase, GTP-utilising PF555_04380 IPR035077 Phosphoenolpyruvate carboxykinase, C-terminal P-loop domain PF555_04380 IPR035078 Phosphoenolpyruvate carboxykinase, GTP-utilising, N-terminal PF555_04380 IPR008210 Phosphoenolpyruvate carboxykinase, N-terminal PF555_04385 IPR016064 NAD kinase/diacylglycerol kinase-like domain superfamily PF555_04385 IPR001206 Diacylglycerol kinase, catalytic domain PF555_04385 IPR017438 Inorganic polyphosphate/ATP-NAD kinase, N-terminal PF555_04390 IPR026575 3,5-cyclic adenosine monophosphate phosphodiesterase CpdA PF555_04390 IPR004843 Calcineurin-like phosphoesterase domain, ApaH type PF555_04390 IPR042281 GpdQ, beta-strand dimerisation domain PF555_04390 IPR042283 GpdQ, catalytic alpha/beta sandwich domain PF555_04400 IPR011032 GroES-like superfamily PF555_04400 IPR018369 Chaperonin GroES, conserved site PF555_04400 IPR037124 GroES chaperonin superfamily PF555_04400 IPR020818 GroES chaperonin family PF555_04405 IPR027413 GroEL-like equatorial domain superfamily PF555_04405 IPR027409 GroEL-like apical domain superfamily PF555_04405 IPR002423 Chaperonin Cpn60/TCP-1 family PF555_04405 IPR001844 Chaperonin Cpn60 PF555_04405 IPR018370 Chaperonin Cpn60, conserved site PF555_04405 IPR027410 TCP-1-like chaperonin intermediate domain superfamily PF555_04410 IPR000829 DAGK family PF555_04410 IPR033718 Diacylglycerol kinase, prokaryotic PF555_04410 IPR036945 Diacylglycerol kinase (DAGK) superfamily PF555_04415 IPR001279 Metallo-beta-lactamase PF555_04415 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like PF555_04420 IPR030395 Glycerophosphodiester phosphodiesterase domain PF555_04420 IPR017946 PLC-like phosphodiesterase, TIM beta/alpha-barrel domain superfamily PF555_04425 IPR001036 Acriflavin resistance protein PF555_04425 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains PF555_04425 IPR004764 Hydrophobe/amphiphile efflux-1 HAE1 PF555_04435 IPR001915 Peptidase M48 PF555_04435 IPR022919 Peptidase M48, protease HtpX, putative PF555_04440 IPR023346 Lysozyme-like domain superfamily PF555_04440 IPR000189 Prokaryotic transglycosylase, active site PF555_04440 IPR008258 Transglycosylase SLT domain 1 PF555_04445 IPR035107 tRNA thiolation protein, TtcA/Ctu1 type PF555_04445 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold PF555_04445 IPR011063 tRNA(Ile)-lysidine/2-thiocytidine synthase, N-terminal PF555_04445 IPR012089 tRNA-cytidine(32) 2-sulfurtransferase PF555_04455 IPR023703 Membrane-bound lytic murein transglycosylase F PF555_04455 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF PF555_04455 IPR000189 Prokaryotic transglycosylase, active site PF555_04455 IPR008258 Transglycosylase SLT domain 1 PF555_04455 IPR023346 Lysozyme-like domain superfamily PF555_04460 IPR028624 Transcription elongation factor GreA/GreB PF555_04460 IPR001437 Transcription elongation factor, GreA/GreB, C-terminal PF555_04460 IPR022691 Transcription elongation factor, GreA/GreB, N-terminal PF555_04460 IPR036805 Transcription elongation factor, GreA/GreB, N-terminal domain superfamily PF555_04460 IPR018151 Transcription elongation factor, GreA/GreB, conserved site PF555_04460 IPR036953 Transcription elongation factor GreA/GreB, C-terminal domain superfamily PF555_04460 IPR006358 Transcription elongation factor GreB PF555_04460 IPR023459 Transcription elongation factor GreA/GreB family PF555_04485 IPR018654 Putative toxin of bacterial toxin-antitoxin pair PF555_04505 IPR029479 Nitroreductase PF555_04505 IPR000415 Nitroreductase-like PF555_04510 IPR011284 3-oxoacyl-(acyl-carrier-protein) reductase PF555_04510 IPR036291 NAD(P)-binding domain superfamily PF555_04510 IPR002347 Short-chain dehydrogenase/reductase SDR PF555_04510 IPR020904 Short-chain dehydrogenase/reductase, conserved site PF555_04520 IPR018193 Glycerate kinase, flavodoxin-like fold PF555_04520 IPR004381 Glycerate kinase PF555_04520 IPR018197 Glycerate kinase, restriction-enzyme-like fold PF555_04520 IPR036129 Glycerate kinase superfamily PF555_04525 IPR009010 Aspartate decarboxylase-like domain superfamily PF555_04525 IPR037951 YdeP-like, MopB domain PF555_04525 IPR006656 Molybdopterin oxidoreductase PF555_04525 IPR010046 Oxidoreductase alpha (molybdopterin) subunit PF555_04525 IPR041953 YdeP, molybdopterin-binding oxidoreductase-like domain PF555_04530 IPR003786 Sulfur carrier protein FdhD PF555_04530 IPR016193 Cytidine deaminase-like PF555_04535 IPR010652 Domain of unknown function DUF1232 PF555_04540 IPR038251 PdxB, dimerisation domain superfamily PF555_04540 IPR036291 NAD(P)-binding domain superfamily PF555_04540 IPR029752 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain conserved site 1 PF555_04540 IPR006140 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain PF555_04540 IPR006139 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain PF555_04540 IPR024531 Erythronate-4-phosphate dehydrogenase, dimerisation domain PF555_04540 IPR020921 Erythronate-4-phosphate dehydrogenase PF555_04545 IPR004364 Aminoacyl-tRNA synthetase, class II (D/K/N) PF555_04545 IPR004525 Elongation factor P--(R)-beta-lysine ligase PF555_04545 IPR018149 Lysyl-tRNA synthetase, class II, C-terminal PF555_04545 IPR006195 Aminoacyl-tRNA synthetase, class II PF555_04555 IPR003593 AAA+ ATPase domain PF555_04555 IPR004504 DNA repair protein RadA PF555_04555 IPR027417 P-loop containing nucleoside triphosphate hydrolase PF555_04555 IPR020588 DNA recombination and repair protein RecA-like, ATP-binding domain PF555_04555 IPR020568 Ribosomal protein S5 domain 2-type fold PF555_04555 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup PF555_04555 IPR041166 LapB, rubredoxin metal binding domain PF555_04560 IPR004840 Amino acid permease, conserved site PF555_04560 IPR004841 Amino acid permease/ SLC12A domain PF555_04570 IPR029066 PLP-binding barrel PF555_04570 IPR009006 Alanine racemase/group IV decarboxylase, C-terminal PF555_04570 IPR002986 Diaminopimelate decarboxylase, LysA PF555_04570 IPR022643 Orn/DAP/Arg decarboxylase 2, C-terminal PF555_04570 IPR022657 Orn/DAP/Arg decarboxylase 2, conserved site PF555_04570 IPR022644 Orn/DAP/Arg decarboxylase 2, N-terminal PF555_04570 IPR022653 Orn/DAP/Arg decarboxylase 2, pyridoxal-phosphate binding site PF555_04570 IPR000183 Ornithine/DAP/Arg decarboxylase PF555_04575 IPR018510 Diaminopimelate epimerase, active site PF555_04575 IPR001653 Diaminopimelate epimerase, DapF PF555_04580 IPR001123 Amino acid exporter protein, LeuE-type PF555_04580 IPR004778 Homoserine/Threonine efflux protein PF555_04585 IPR010998 Integrase/recombinase, N-terminal PF555_04585 IPR023009 Tyrosine recombinase XerC/XerD PF555_04585 IPR004107 Integrase, SAM-like, N-terminal PF555_04585 IPR002104 Integrase, catalytic domain PF555_04585 IPR013762 Integrase-like, catalytic domain superfamily PF555_04585 IPR011931 Tyrosine recombinase XerC PF555_04585 IPR011010 DNA breaking-rejoining enzyme, catalytic core PF555_04590 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold PF555_04590 IPR000049 Electron transfer flavoprotein, beta-subunit, conserved site PF555_04590 IPR014730 Electron transfer flavoprotein, alpha/beta-subunit, N-terminal PF555_04590 IPR012255 Electron transfer flavoprotein, beta subunit PF555_04590 IPR033948 Electron transfer flavoprotein, beta subunit, N-terminal PF555_04595 IPR018206 Electron transfer flavoprotein subunit alpha, conserved site PF555_04595 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold PF555_04595 IPR014730 Electron transfer flavoprotein, alpha/beta-subunit, N-terminal PF555_04595 IPR033947 Electron transfer flavoprotein, alpha subunit, N-terminal PF555_04595 IPR001308 Electron transfer flavoprotein alpha subunit/FixB PF555_04595 IPR014731 Electron transfer flavoprotein, alpha subunit, C-terminal PF555_04595 IPR029035 DHS-like NAD/FAD-binding domain superfamily PF555_04600 IPR013760 DNA topoisomerase, type IIA-like domain superfamily PF555_04600 IPR035516 DNA gyrase/topoisomerase IV, subunit A, C-terminal PF555_04600 IPR005743 DNA gyrase, subunit A PF555_04600 IPR013758 DNA topoisomerase, type IIA, subunit A/ C-terminal, alpha-beta PF555_04600 IPR006691 DNA gyrase/topoisomerase IV, subunit A, C-terminal repeat PF555_04600 IPR002205 DNA topoisomerase, type IIA, subunit A/C-terminal PF555_04600 IPR013757 Type IIA DNA topoisomerase subunit A, alpha-helical domain superfamily PF555_04615 IPR029044 Nucleotide-diphospho-sugar transferases PF555_04615 IPR001173 Glycosyltransferase 2-like PF555_04635 IPR039562 Membrane fusion protein, biotin-lipoyl like domain PF555_04645 IPR020578 Aminotransferase class-V, pyridoxal-phosphate binding site PF555_04645 IPR000192 Aminotransferase class V domain PF555_04645 IPR015421 Pyridoxal phosphate-dependent transferase, major domain PF555_04645 IPR015424 Pyridoxal phosphate-dependent transferase PF555_04645 IPR022278 Phosphoserine aminotransferase PF555_04645 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 PF555_04660 IPR003791 Protein of unknown function UPF0178 PF555_04670 IPR025857 MacB-like periplasmic core domain PF555_04670 IPR011925 Lipoprotein-releasing system transmembrane protein LolC/E PF555_04670 IPR003838 ABC transporter permease protein domain PF555_04675 IPR003439 ABC transporter-like PF555_04675 IPR027417 P-loop containing nucleoside triphosphate hydrolase PF555_04675 IPR015854 ABC transporter, lipoprotein release, LolD PF555_04675 IPR017871 ABC transporter, conserved site PF555_04675 IPR003593 AAA+ ATPase domain PF555_04680 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like PF555_04680 IPR001279 Metallo-beta-lactamase PF555_04680 IPR025405 Domain of unknown function DUF4131 PF555_04680 IPR004797 Competence protein ComEC/Rec2 PF555_04680 IPR004477 ComEC/Rec2-related protein PF555_04680 IPR035681 ComA-like, MBL domain PF555_04690 IPR004670 Na+/H+ antiporter NhaA PF555_04690 IPR002142 Peptidase S49 PF555_04690 IPR023171 Na/H antiporter domain superfamily PF555_04690 IPR029045 ClpP/crotonase-like domain superfamily PF555_04695 IPR029058 Alpha/Beta hydrolase fold PF555_04695 IPR000073 Alpha/beta hydrolase fold-1 PF555_04700 IPR036477 Formyl transferase, N-terminal domain superfamily PF555_04700 IPR001555 Phosphoribosylglycinamide formyltransferase, active site PF555_04700 IPR004607 Phosphoribosylglycinamide formyltransferase PF555_04700 IPR002376 Formyl transferase, N-terminal PF555_04705 IPR010918 PurM-like, C-terminal domain PF555_04705 IPR016188 PurM-like, N-terminal domain PF555_04705 IPR036676 PurM-like, C-terminal domain superfamily PF555_04705 IPR036921 PurM-like, N-terminal domain superfamily PF555_04705 IPR004733 Phosphoribosylformylglycinamidine cyclo-ligase PF555_04710 IPR002549 Transmembrane protein TqsA-like PF555_04715 IPR013317 Chromosomal replication initiator protein DnaA PF555_04715 IPR018312 Chromosomal replication control, initiator DnaA, conserved site PF555_04715 IPR010921 Trp repressor/replication initiator PF555_04715 IPR003593 AAA+ ATPase domain PF555_04715 IPR013159 Chromosomal replication initiator, DnaA C-terminal PF555_04715 IPR024633 DnaA N-terminal domain PF555_04715 IPR038454 DnaA, N-terminal domain superfamily PF555_04715 IPR001957 Chromosomal replication control, initiator DnaA PF555_04715 IPR027417 P-loop containing nucleoside triphosphate hydrolase PF555_04715 IPR020591 Chromosomal replication control, initiator DnaA-like PF555_04730 IPR024474 Zinc-finger binding domain of transposase IS66 PF555_04730 IPR024463 Transposase TnpC, homeodomain PF555_04730 IPR004291 Transposase, IS66 PF555_04730 IPR039552 Transposase IS66, C-terminal PF555_04740 IPR009057 Homeobox-like domain superfamily PF555_04745 IPR005569 Arc-like DNA binding domain PF555_04745 IPR010985 Ribbon-helix-helix PF555_04745 IPR013321 Arc-type ribbon-helix-helix PF555_04810 IPR038488 Integrase, DNA-binding domain superfamily PF555_04810 IPR010998 Integrase/recombinase, N-terminal PF555_04810 IPR025166 Integrase, DNA-binding domain PF555_04810 IPR002104 Integrase, catalytic domain PF555_04810 IPR013762 Integrase-like, catalytic domain superfamily PF555_04810 IPR011010 DNA breaking-rejoining enzyme, catalytic core PF555_04820 IPR036259 MFS transporter superfamily PF555_04820 IPR020846 Major facilitator superfamily domain PF555_04820 IPR005279 Dipeptide/tripeptide permease PF555_04820 IPR018456 PTR2 family proton/oligopeptide symporter, conserved site PF555_04820 IPR000109 Proton-dependent oligopeptide transporter family PF555_04825 IPR014746 Glutamine synthetase/guanido kinase, catalytic domain PF555_04825 IPR027302 Glutamine synthetase, N-terminal conserved site PF555_04825 IPR001637 Glutamine synthetase class-I, adenylation site PF555_04825 IPR004809 Glutamine synthetase type I PF555_04825 IPR027303 Glutamine synthetase, glycine-rich site PF555_04825 IPR008146 Glutamine synthetase, catalytic domain PF555_04825 IPR036651 Glutamine synthetase, N-terminal domain superfamily PF555_04825 IPR008147 Glutamine synthetase, beta-Grasp domain PF555_04830 IPR007440 Chorismate--pyruvate lyase PF555_04830 IPR028978 Chorismate pyruvate-lyase/UbiC transcription regulator-associated domain superfamily PF555_04835 IPR000537 UbiA prenyltransferase family PF555_04835 IPR006370 4-hydroxybenzoate polyprenyltransferase-like PF555_04835 IPR039653 Prenyltransferase PF555_04870 IPR036314 Manganese/iron superoxide dismutase, C-terminal domain superfamily PF555_04870 IPR036324 Manganese/iron superoxide dismutase, N-terminal domain superfamily PF555_04870 IPR019831 Manganese/iron superoxide dismutase, N-terminal PF555_04870 IPR019832 Manganese/iron superoxide dismutase, C-terminal PF555_04870 IPR019833 Manganese/iron superoxide dismutase, binding site PF555_04870 IPR001189 Manganese/iron superoxide dismutase PF555_04875 IPR002678 GTP cyclohydrolase 1 type 2/Nif3 PF555_04875 IPR036069 GTP cyclohydrolase 1 type 2/Nif3 superfamily PF555_04880 IPR009003 Peptidase S1, PA clan PF555_04880 IPR011782 Peptidase S1C, Do PF555_04880 IPR036034 PDZ superfamily PF555_04880 IPR001478 PDZ domain PF555_04880 IPR001940 Peptidase S1C PF555_04885 IPR012006 tRNA nucleotidyltransferase, proteobacteria PF555_04885 IPR003607 HD/PDEase domain PF555_04885 IPR002646 Poly A polymerase, head domain PF555_04885 IPR032828 tRNA nucleotidyltransferase/poly(A) polymerase, RNA and SrmB- binding domain PF555_04890 IPR042113 Phosphate acetyltransferase, domain 1 PF555_04890 IPR042112 Phosphate acetyltransferase, domain 2 PF555_04890 IPR002505 Phosphate acetyl/butaryl transferase PF555_04890 IPR012188 NAD(P)-dependent malic enzyme PF555_04890 IPR015884 Malic enzyme, conserved site PF555_04890 IPR012301 Malic enzyme, N-terminal domain PF555_04890 IPR037062 Malic enzyme, N-terminal domain superfamily PF555_04890 IPR036291 NAD(P)-binding domain superfamily PF555_04890 IPR012302 Malic enzyme, NAD-binding PF555_04895 IPR005330 MHYT domain PF555_04895 IPR029787 Nucleotide cyclase PF555_04895 IPR000160 GGDEF domain PF555_04895 IPR035919 EAL domain superfamily PF555_04895 IPR001633 EAL domain PF555_04900 IPR029026 tRNA (guanine-N1-)-methyltransferase, N-terminal PF555_04900 IPR006700 Ribosomal RNA small subunit methyltransferase E PF555_04900 IPR015947 PUA-like superfamily PF555_04900 IPR029028 Alpha/beta knot methyltransferases PF555_04905 IPR003171 Methylenetetrahydrofolate reductase PF555_04905 IPR004620 5,10-methylenetetrahydrofolate reductase PF555_04905 IPR029041 FAD-linked oxidoreductase-like PF555_04910 IPR042172 Adenosylhomocysteinase-like superfamily PF555_04910 IPR000043 Adenosylhomocysteinase-like PF555_04910 IPR015878 S-adenosyl-L-homocysteine hydrolase, NAD binding domain PF555_04910 IPR036291 NAD(P)-binding domain superfamily PF555_04910 IPR020082 S-adenosyl-L-homocysteine hydrolase, conserved site PF555_04925 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal PF555_04925 IPR036250 Acyl-CoA dehydrogenase-like, C-terminal PF555_04925 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal PF555_04925 IPR037069 Acyl-CoA dehydrogenase/oxidase, N-terminal domain superfamily PF555_04925 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily PF555_04925 IPR015396 Acyl-CoA dehydrogenase, C-termina, bacterial type PF555_04930 IPR013785 Aldolase-type TIM barrel PF555_04930 IPR006638 Elp3/MiaB/NifB PF555_04930 IPR007197 Radical SAM PF555_04930 IPR003698 Lipoyl synthase PF555_04935 IPR022962 Soluble pyridine nucleotide transhydrogenase PF555_04935 IPR004099 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain PF555_04935 IPR001100 Pyridine nucleotide-disulphide oxidoreductase, class I PF555_04935 IPR016156 FAD/NAD-linked reductase, dimerisation domain superfamily PF555_04935 IPR023753 FAD/NAD(P)-binding domain PF555_04935 IPR036188 FAD/NAD(P)-binding domain superfamily PF555_04945 IPR004737 Nitrate transporter PF555_04945 IPR020846 Major facilitator superfamily domain PF555_04945 IPR011701 Major facilitator superfamily PF555_04945 IPR036259 MFS transporter superfamily PF555_04955 IPR000994 Peptidase M24 PF555_04955 IPR001714 Peptidase M24, methionine aminopeptidase PF555_04955 IPR002467 Peptidase M24A, methionine aminopeptidase, subfamily 1 PF555_04955 IPR036005 Creatinase/aminopeptidase-like PF555_04960 IPR001865 Ribosomal protein S2 PF555_04960 IPR018130 Ribosomal protein S2, conserved site PF555_04960 IPR023591 Ribosomal protein S2, flavodoxin-like domain superfamily PF555_04960 IPR005706 Ribosomal protein S2, bacteria/mitochondria/plastid PF555_04965 IPR001816 Translation elongation factor EFTs/EF1B PF555_04965 IPR036402 Elongation factor Ts, dimerisation domain superfamily PF555_04965 IPR018101 Translation elongation factor Ts, conserved site PF555_04965 IPR009060 UBA-like superfamily PF555_04965 IPR014039 Translation elongation factor EFTs/EF1B, dimerisation PF555_04975 IPR009057 Homeobox-like domain superfamily PF555_04975 IPR011051 RmlC-like cupin domain superfamily PF555_04975 IPR018060 DNA binding HTH domain, AraC-type PF555_04975 IPR018062 HTH domain AraC-type, conserved site PF555_04995 IPR007730 Sporulation-like domain PF555_04995 IPR012997 Rare lipoprotein A PF555_04995 IPR036908 RlpA-like domain superfamily PF555_04995 IPR009009 RlpA-like protein, double-psi beta-barrel domain PF555_04995 IPR034718 Endolytic peptidoglycan transglycosylase RlpA PF555_05000 IPR011757 Lytic transglycosylase MltB PF555_05000 IPR031304 Transglycosylase SLT domain 2 PF555_05000 IPR023346 Lysozyme-like domain superfamily PF555_05005 IPR011923 Probable peptidoglycan glycosyltransferase RodA/MrdB PF555_05005 IPR001182 Probable peptidoglycan glycosyltransferase FtsW/RodA PF555_05005 IPR018365 Cell cycle, FtsW / RodA / SpoVE, conserved site PF555_05015 IPR016428 NADPH-dependent 7-cyano-7-deazaguanine reductase, QueF type 2 PF555_05015 IPR029139 NADPH-dependent 7-cyano-7-deazaguanine reductase, N-terminal PF555_05015 IPR029500 NADPH-dependent 7-cyano-7-deazaguanine reductase QueF PF555_05020 IPR013525 ABC-2 type transporter PF555_05020 IPR000412 ABC-2 transporter PF555_05025 IPR003593 AAA+ ATPase domain PF555_05025 IPR003439 ABC transporter-like PF555_05025 IPR017871 ABC transporter, conserved site PF555_05025 IPR027417 P-loop containing nucleoside triphosphate hydrolase PF555_05055 IPR001085 Serine hydroxymethyltransferase PF555_05055 IPR019798 Serine hydroxymethyltransferase, pyridoxal phosphate binding site PF555_05055 IPR039429 Serine hydroxymethyltransferase-like domain PF555_05055 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 PF555_05055 IPR015421 Pyridoxal phosphate-dependent transferase, major domain PF555_05055 IPR015424 Pyridoxal phosphate-dependent transferase PF555_05060 IPR003423 Outer membrane efflux protein PF555_05060 IPR010131 RND efflux system, outer membrane lipoprotein, NodT PF555_05065 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains PF555_05065 IPR001036 Acriflavin resistance protein PF555_05065 IPR004764 Hydrophobe/amphiphile efflux-1 HAE1 PF555_05070 IPR039562 Membrane fusion protein, biotin-lipoyl like domain PF555_05070 IPR006143 RND efflux pump, membrane fusion protein PF555_05070 IPR022824 Multidrug resistance protein MdtA PF555_05075 IPR036390 Winged helix DNA-binding domain superfamily PF555_05075 IPR036388 Winged helix-like DNA-binding domain superfamily PF555_05075 IPR005119 LysR, substrate-binding PF555_05075 IPR000847 Transcription regulator HTH, LysR PF555_05080 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF PF555_05080 IPR005768 Specific amino acids and opine-binding periplasmic protein, ABC transporter PF555_05080 IPR018313 Solute-binding protein family 3, conserved site PF555_05085 IPR000515 ABC transporter type 1, transmembrane domain MetI-like PF555_05085 IPR035906 MetI-like superfamily PF555_05085 IPR010065 Amino acid ABC transporter, permease protein, 3-TM domain PF555_05085 IPR030199 Histidine transport system permease protein HisQ PF555_05090 IPR010065 Amino acid ABC transporter, permease protein, 3-TM domain PF555_05090 IPR000515 ABC transporter type 1, transmembrane domain MetI-like PF555_05090 IPR035906 MetI-like superfamily PF555_05095 IPR030679 ABC-type amino acid transport system, ATPase component, HisP-type PF555_05095 IPR003439 ABC transporter-like PF555_05095 IPR027417 P-loop containing nucleoside triphosphate hydrolase PF555_05095 IPR017871 ABC transporter, conserved site PF555_05095 IPR003593 AAA+ ATPase domain PF555_05100 IPR000390 Small multidrug resistance protein family PF555_05105 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site PF555_05105 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain PF555_05110 IPR032525 Peptidase family U32, C-terminal PF555_05110 IPR001539 Peptidase U32 PF555_05115 IPR004839 Aminotransferase, class I/classII PF555_05115 IPR036390 Winged helix DNA-binding domain superfamily PF555_05115 IPR036388 Winged helix-like DNA-binding domain superfamily PF555_05115 IPR000524 Transcription regulator HTH, GntR PF555_05115 IPR015421 Pyridoxal phosphate-dependent transferase, major domain PF555_05115 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 PF555_05115 IPR015424 Pyridoxal phosphate-dependent transferase PF555_05120 IPR003719 Phenazine biosynthesis PhzF protein PF555_05125 IPR017938 Riboflavin synthase-like beta-barrel PF555_05125 IPR001433 Oxidoreductase FAD/NAD(P)-binding PF555_05125 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase PF555_05125 IPR033892 Ferredoxin--NADP reductase, bacteria PF555_05125 IPR017927 FAD-binding domain, ferredoxin reductase-type PF555_05125 IPR008333 Flavoprotein pyridine nucleotide cytochrome reductase-like, FAD-binding domain PF555_05125 IPR039261 Ferredoxin-NADP reductase (FNR), nucleotide-binding domain PF555_05130 IPR041369 TrmO, C-terminal PF555_05130 IPR023368 Uncharacterised protein family UPF0066, conserved site PF555_05130 IPR040372 YaeB-like PF555_05130 IPR036413 YaeB-like superfamily PF555_05130 IPR036414 YaeB, N-terminal domain superfamily PF555_05130 IPR023370 TrmO-like, N-terminal domain PF555_05160 IPR011006 CheY-like superfamily PF555_05160 IPR001867 OmpR/PhoB-type DNA-binding domain PF555_05160 IPR016032 Signal transduction response regulator, C-terminal effector PF555_05160 IPR001789 Signal transduction response regulator, receiver domain PF555_05160 IPR039420 Transcriptional regulatory protein WalR-like PF555_05160 IPR036388 Winged helix-like DNA-binding domain superfamily PF555_05165 IPR013727 Two-component sensor kinase, N-terminal PF555_05165 IPR003594 Histidine kinase/HSP90-like ATPase PF555_05165 IPR036890 Histidine kinase/HSP90-like ATPase superfamily PF555_05165 IPR005467 Histidine kinase domain PF555_05165 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain PF555_05165 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily PF555_05165 IPR004358 Signal transduction histidine kinase-related protein, C-terminal PF555_05175 IPR003561 Mutator MutT PF555_05175 IPR020476 NUDIX hydrolase PF555_05175 IPR015797 NUDIX hydrolase-like domain superfamily PF555_05175 IPR020084 NUDIX hydrolase, conserved site PF555_05175 IPR000086 NUDIX hydrolase domain PF555_05185 IPR001460 Penicillin-binding protein, transpeptidase PF555_05185 IPR036950 Penicillin binding protein transglycosylase domain PF555_05185 IPR011813 Penicillin-binding protein 1B PF555_05185 IPR028166 Bifunctional transglycosylase second domain PF555_05185 IPR001264 Glycosyl transferase, family 51 PF555_05185 IPR012338 Beta-lactamase/transpeptidase-like PF555_05185 IPR023346 Lysozyme-like domain superfamily PF555_05190 IPR017438 Inorganic polyphosphate/ATP-NAD kinase, N-terminal PF555_05190 IPR017437 ATP-NAD kinase, PpnK-type, C-terminal PF555_05190 IPR016064 NAD kinase/diacylglycerol kinase-like domain superfamily PF555_05190 IPR002504 NAD kinase PF555_05195 IPR009749 Protein of unknown function DUF1315 PF555_05200 IPR035902 Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain superfamily PF555_05200 IPR036320 Glycosyl transferase family 3, N-terminal domain superfamily PF555_05200 IPR017459 Glycosyl transferase family 3, N-terminal domain PF555_05200 IPR000312 Glycosyl transferase, family 3 PF555_05200 IPR005940 Anthranilate phosphoribosyl transferase PF555_05205 IPR023954 C4-dicarboxylate transport protein PF555_05205 IPR001991 Sodium:dicarboxylate symporter PF555_05205 IPR018107 Sodium:dicarboxylate symporter, conserved site PF555_05205 IPR036458 Sodium:dicarboxylate symporter superfamily PF555_05210 IPR037069 Acyl-CoA dehydrogenase/oxidase, N-terminal domain superfamily PF555_05210 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal PF555_05210 IPR036250 Acyl-CoA dehydrogenase-like, C-terminal PF555_05210 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal PF555_05210 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily PF555_05210 IPR006091 Acyl-CoA oxidase/dehydrogenase, central domain PF555_05210 IPR006089 Acyl-CoA dehydrogenase, conserved site PF555_05215 IPR000801 Putative esterase PF555_05215 IPR029058 Alpha/Beta hydrolase fold PF555_05220 IPR036979 Chorismate mutase domain superfamily PF555_05220 IPR002701 Chorismate mutase II, prokaryotic-type PF555_05220 IPR010957 Gamma/beta/epsilon proteobacterial P-protein, chorismate mutase domain PF555_05220 IPR001086 Prephenate dehydratase PF555_05220 IPR018528 Prephenate dehydratase, conserved site PF555_05220 IPR008242 Bifunctional P-protein, chorismate mutase/prephenate dehydratase PF555_05220 IPR002912 ACT domain PF555_05220 IPR036263 Chorismate mutase type II superfamily PF555_05225 IPR013792 RNA 3'-terminal phosphate cyclase/enolpyruvate transferase, alpha/beta PF555_05225 IPR023193 3-phosphoshikimate 1-carboxyvinyltransferase, conserved site PF555_05225 IPR006264 3-phosphoshikimate 1-carboxyvinyltransferase PF555_05225 IPR036968 Enolpyruvate transferase domain superfamily PF555_05225 IPR001986 Enolpyruvate transferase domain PF555_05235 IPR011650 Peptidase M20, dimerisation domain PF555_05235 IPR001160 Peptidase M20C, Xaa-His dipeptidase PF555_05235 IPR002933 Peptidase M20 PF555_05240 IPR001279 Metallo-beta-lactamase PF555_05240 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like PF555_05240 IPR013471 Ribonuclease Z/BN PF555_05250 IPR005583 Peroxide stress protein YaaA PF555_05260 IPR013785 Aldolase-type TIM barrel PF555_05260 IPR008867 Thiazole synthase PF555_05260 IPR033983 Thiazole synthase ThiG PF555_05270 IPR006696 Protein of unknown function DUF423 PF555_05275 IPR014284 RNA polymerase sigma-70 like domain PF555_05275 IPR013325 RNA polymerase sigma factor, region 2 PF555_05275 IPR012759 RNA polymerase sigma factor RpoH, proteobacteria PF555_05275 IPR013324 RNA polymerase sigma factor, region 3/4-like PF555_05275 IPR007630 RNA polymerase sigma-70 region 4 PF555_05275 IPR007627 RNA polymerase sigma-70 region 2 PF555_05275 IPR009042 RNA polymerase sigma-70 region 1.2 PF555_05275 IPR000943 RNA polymerase sigma-70 PF555_05290 IPR019844 Cold-shock (CSD) domain PF555_05290 IPR002059 Cold-shock protein, DNA-binding PF555_05290 IPR012340 Nucleic acid-binding, OB-fold PF555_05290 IPR012156 Cold shock, CspA PF555_05290 IPR011129 Cold shock domain PF555_05295 IPR011545 DEAD/DEAH box helicase domain PF555_05295 IPR014014 RNA helicase, DEAD-box type, Q motif PF555_05295 IPR023554 ATP-dependent RNA helicase RhlB type PF555_05295 IPR000629 ATP-dependent RNA helicase DEAD-box, conserved site PF555_05295 IPR027417 P-loop containing nucleoside triphosphate hydrolase PF555_05295 IPR001650 Helicase, C-terminal PF555_05295 IPR014001 Helicase superfamily 1/2, ATP-binding domain PF555_05305 IPR026021 Putative NAD(P)H nitroreductase YdjA-like PF555_05305 IPR029479 Nitroreductase PF555_05305 IPR000415 Nitroreductase-like PF555_05310 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily PF555_05310 IPR013328 6-phosphogluconate dehydrogenase, domain 2 PF555_05310 IPR006168 Glycerol-3-phosphate dehydrogenase, NAD-dependent PF555_05310 IPR006109 Glycerol-3-phosphate dehydrogenase, NAD-dependent, C-terminal PF555_05310 IPR011128 Glycerol-3-phosphate dehydrogenase, NAD-dependent, N-terminal PF555_05310 IPR036291 NAD(P)-binding domain superfamily PF555_05330 IPR001295 Dihydroorotate dehydrogenase, conserved site PF555_05330 IPR012135 Dihydroorotate dehydrogenase, class 1/ 2 PF555_05330 IPR013785 Aldolase-type TIM barrel PF555_05330 IPR005720 Dihydroorotate dehydrogenase domain PF555_05330 IPR005719 Dihydroorotate dehydrogenase, class 2 PF555_05335 IPR003825 Colicin V production, CvpA PF555_05340 IPR017932 Glutamine amidotransferase type 2 domain PF555_05340 IPR000836 Phosphoribosyltransferase domain PF555_05340 IPR029055 Nucleophile aminohydrolases, N-terminal PF555_05340 IPR029057 Phosphoribosyltransferase-like PF555_05340 IPR005854 Amidophosphoribosyltransferase PF555_05340 IPR035584 Amidophosphoribosyltransferase, N-terminal PF555_05355 IPR006140 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain PF555_05355 IPR006139 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain PF555_05355 IPR023756 Glyoxylate/hydroxypyruvate reductase B PF555_05355 IPR029753 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain conserved site PF555_05355 IPR036291 NAD(P)-binding domain superfamily PF555_05360 IPR011990 Tetratricopeptide-like helical domain superfamily PF555_05360 IPR030873 Beta-barrel assembly-enhancing protease PF555_05360 IPR001915 Peptidase M48 PF555_05365 IPR019004 Uncharacterised protein YqeY/Aim41 PF555_05365 IPR042184 YqeY/Aim41, N-terminal domain PF555_05365 IPR023168 Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase, C-terminal, domain 2 PF555_05365 IPR003789 Aspartyl/glutamyl-tRNA amidotransferase subunit B-like PF555_05370 IPR001911 Ribosomal protein S21 PF555_05370 IPR018278 Ribosomal protein S21, conserved site PF555_05370 IPR038380 Ribosomal protein S21 superfamily PF555_05375 IPR000905 Gcp-like domain PF555_05375 IPR017861 Kae1/TsaD family PF555_05375 IPR017860 Peptidase M22, conserved site PF555_05375 IPR022450 tRNA N6-adenosine threonylcarbamoyltransferase, TsaD PF555_05395 IPR008271 Serine/threonine-protein kinase, active site PF555_05395 IPR017441 Protein kinase, ATP binding site PF555_05395 IPR000719 Protein kinase domain PF555_05395 IPR011009 Protein kinase-like domain superfamily PF555_05395 IPR005543 PASTA domain PF555_05420 IPR005565 Haemolysin activator HlyB, C-terminal PF555_05420 IPR013686 Polypeptide-transport-associated, ShlB-type PF555_05420 IPR034746 POTRA domain PF555_05420 IPR035251 ShlB, POTRA domain PF555_05420 IPR027282 Two partner secretion pathway transporter PF555_05425 IPR006914 VENN motif-containing domain PF555_05425 IPR011050 Pectin lyase fold/virulence factor PF555_05425 IPR012334 Pectin lyase fold PF555_05425 IPR025157 Hemagglutinin repeat PF555_05425 IPR008638 Filamentous haemagglutinin, N-terminal PF555_05425 IPR024973 ESPR domain PF555_05425 IPR010069 Filamentous haemagglutinin, 20-residue x2 repeat PF555_05425 IPR011050 Pectin lyase fold/virulence factor PF555_05425 IPR012334 Pectin lyase fold PF555_05425 IPR025157 Hemagglutinin repeat PF555_05425 IPR008638 Filamentous haemagglutinin, N-terminal PF555_05425 IPR010069 Filamentous haemagglutinin, 20-residue x2 repeat PF555_05425 IPR024973 ESPR domain PF555_05425 IPR006914 VENN motif-containing domain PF555_05465 IPR036390 Winged helix DNA-binding domain superfamily PF555_05465 IPR036388 Winged helix-like DNA-binding domain superfamily PF555_05465 IPR000847 Transcription regulator HTH, LysR PF555_05465 IPR005119 LysR, substrate-binding PF555_05495 IPR036292 Proline/betaine transporter ProP, C-terminal PF555_05495 IPR020846 Major facilitator superfamily domain PF555_05495 IPR005828 Major facilitator, sugar transporter-like PF555_05495 IPR036259 MFS transporter superfamily PF555_05495 IPR004736 MFS transporter, metabolite:H symporter PF555_05495 IPR015041 Osmosensory transporter coiled coil PF555_05495 IPR005829 Sugar transporter, conserved site PF555_05500 IPR015797 NUDIX hydrolase-like domain superfamily PF555_05500 IPR000086 NUDIX hydrolase domain PF555_05530 IPR007498 Intermembrane transport protein PqiA-like PF555_05530 IPR005219 Intermembrane transport protein PqiA-like, Enterobacteria-type PF555_05535 IPR003399 Mce/MlaD PF555_05545 IPR001920 Asp/Glu racemase PF555_05545 IPR015942 Asp/Glu/hydantoin racemase PF555_05545 IPR018187 Asp/Glu racemase, active site 1 PF555_05545 IPR033134 Asp/Glu racemase, active site 2 PF555_05545 IPR004380 Aspartate racemase PF555_05550 IPR000620 EamA domain PF555_05560 IPR011042 Six-bladed beta-propeller, TolB-like PF555_05560 IPR012938 Glucose/Sorbosone dehydrogenase PF555_05560 IPR011041 Soluble quinoprotein glucose/sorbosone dehydrogenase PF555_05580 IPR023954 C4-dicarboxylate transport protein PF555_05580 IPR001991 Sodium:dicarboxylate symporter PF555_05580 IPR018107 Sodium:dicarboxylate symporter, conserved site PF555_05580 IPR036458 Sodium:dicarboxylate symporter superfamily PF555_05590 IPR035680 Hydroxyacylglutathione hydrolase, MBL domain PF555_05590 IPR032282 Hydroxyacylglutathione hydrolase, C-terminal domain PF555_05590 IPR017782 Hydroxyacylglutathione hydrolase PF555_05590 IPR001279 Metallo-beta-lactamase PF555_05590 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like PF555_05595 IPR035906 MetI-like superfamily PF555_05595 IPR000515 ABC transporter type 1, transmembrane domain MetI-like PF555_05600 IPR018449 NIL domain PF555_05600 IPR026253 Methionine import ATP-binding protein MetN PF555_05600 IPR027417 P-loop containing nucleoside triphosphate hydrolase PF555_05600 IPR041701 Methionine import ATP-binding protein MetN, ATP-binding cassette domain PF555_05600 IPR003593 AAA+ ATPase domain PF555_05600 IPR017871 ABC transporter, conserved site PF555_05600 IPR017908 ABC transporter, methionine import, ATP-binding protein, MetN, C-terminal PF555_05600 IPR003439 ABC transporter-like PF555_05605 IPR004872 Lipoprotein NlpA family PF555_05610 IPR013815 ATP-grasp fold, subdomain 1 PF555_05610 IPR016185 Pre-ATP-grasp domain superfamily PF555_05610 IPR020561 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain PF555_05610 IPR000115 Phosphoribosylglycinamide synthetase PF555_05610 IPR020560 Phosphoribosylglycinamide synthetase, C-domain PF555_05610 IPR037123 Phosphoribosylglycinamide synthetase, C-domain superfamily PF555_05610 IPR020562 Phosphoribosylglycinamide synthetase, N-terminal PF555_05610 IPR011054 Rudiment single hybrid motif PF555_05610 IPR011761 ATP-grasp fold PF555_05610 IPR020559 Phosphoribosylglycinamide synthetase, conserved site PF555_05615 IPR002695 Bifunctional purine biosynthesis protein PurH-like PF555_05615 IPR024051 AICAR transformylase, duplicated domain superfamily PF555_05615 IPR016193 Cytidine deaminase-like PF555_05615 IPR011607 Methylglyoxal synthase-like domain PF555_05615 IPR036914 Methylglyoxal synthase-like domain superfamily PF555_05620 IPR002197 DNA binding HTH domain, Fis-type PF555_05620 IPR005412 DNA-binding protein Fis PF555_05620 IPR009057 Homeobox-like domain superfamily PF555_05630 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase PF555_05630 IPR004498 Ribosomal protein L11 methyltransferase PF555_05640 IPR036188 FAD/NAD(P)-binding domain superfamily PF555_05640 IPR026904 GidA associated domain 3 PF555_05640 IPR004416 tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG PF555_05640 IPR002218 tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG-related PF555_05640 IPR020595 MnmG-related, conserved site PF555_05650 IPR025841 Circularly permuted ATP-grasp type 2 PF555_05650 IPR016450 Uncharacterised conserved protein UCP005522 PF555_05660 IPR002931 Transglutaminase-like PF555_05660 IPR038765 Papain-like cysteine peptidase superfamily PF555_05660 IPR013589 Bacterial transglutaminase-like, N-terminal PF555_05670 IPR009006 Alanine racemase/group IV decarboxylase, C-terminal PF555_05670 IPR011079 Alanine racemase, C-terminal PF555_05670 IPR001608 Alanine racemase, N-terminal PF555_05670 IPR029066 PLP-binding barrel PF555_05670 IPR000821 Alanine racemase PF555_05675 IPR027417 P-loop containing nucleoside triphosphate hydrolase PF555_05675 IPR016136 DNA helicase DnaB, N-terminal/DNA primase DnaG, C-terminal PF555_05675 IPR007693 DNA helicase, DnaB-like, N-terminal PF555_05675 IPR007692 DNA helicase, DnaB type PF555_05675 IPR036185 DNA helicase, DnaB-like, N-terminal domain superfamily PF555_05675 IPR003593 AAA+ ATPase domain PF555_05675 IPR007694 DNA helicase, DnaB-like, C-terminal PF555_05680 IPR000244 Ribosomal protein L9 PF555_05680 IPR009027 Ribosomal protein L9/RNase H1, N-terminal PF555_05680 IPR020594 Ribosomal protein L9, bacteria/chloroplast PF555_05680 IPR020069 Ribosomal protein L9, C-terminal PF555_05680 IPR036791 Ribosomal protein L9, C-terminal domain superfamily PF555_05680 IPR036935 Ribosomal protein L9, N-terminal domain superfamily PF555_05680 IPR020070 Ribosomal protein L9, N-terminal PF555_05685 IPR001648 Ribosomal protein S18 PF555_05685 IPR036870 Ribosomal protein S18 superfamily PF555_05685 IPR018275 Ribosomal protein S18, conserved site PF555_05690 IPR020814 Ribosomal protein S6, plastid/chloroplast PF555_05690 IPR035980 Ribosomal protein S6 superfamily PF555_05690 IPR000529 Ribosomal protein S6 PF555_05690 IPR014717 Translation elongation factor EF1B/ribosomal protein S6 PF555_05690 IPR020815 Ribosomal protein S6, conserved site PF555_05695 IPR006369 Protohaem IX farnesyltransferase PF555_05695 IPR000537 UbiA prenyltransferase family PF555_05695 IPR030470 UbiA prenyltransferase conserved site PF555_05700 IPR005171 Cytochrome C oxidase subunit IV, prokaryotes PF555_05700 IPR014210 Cytochrome o ubiquinol oxidase subunit IV PF555_05705 IPR000298 Cytochrome c oxidase subunit III-like PF555_05705 IPR024791 Cytochrome c oxidase subunit III PF555_05705 IPR035973 Cytochrome c oxidase subunit III-like superfamily PF555_05705 IPR013833 Cytochrome c oxidase, subunit III, 4-helical bundle PF555_05705 IPR014206 Cytochrome o ubiquinol oxidase, subunit III PF555_05705 IPR033946 Ubiquinol oxidase subunit III domain PF555_05710 IPR023615 Cytochrome c oxidase, subunit I, copper-binding site PF555_05710 IPR000883 Cytochrome c oxidase subunit I PF555_05710 IPR036927 Cytochrome c oxidase-like, subunit I superfamily PF555_05710 IPR023616 Cytochrome c oxidase-like, subunit I domain PF555_05710 IPR014207 Cytochrome o ubiquinol oxidase, subunit I PF555_05715 IPR006333 Cytochrome o ubiquinol oxidase subunit II PF555_05715 IPR036257 Cytochrome C oxidase subunit II, transmembrane domain superfamily PF555_05715 IPR011759 Cytochrome C oxidase subunit II, transmembrane domain PF555_05715 IPR008972 Cupredoxin PF555_05715 IPR034227 Ubiquinol oxidase subunit 2, cupredoxin domain PF555_05715 IPR002429 Cytochrome c oxidase subunit II-like C-terminal PF555_05715 IPR010514 COX aromatic rich motif PF555_05725 IPR000121 PEP-utilising enzyme, C-terminal PF555_05725 IPR013815 ATP-grasp fold, subdomain 1 PF555_05725 IPR008279 PEP-utilising enzyme, mobile domain PF555_05725 IPR006319 Phosphoenolpyruvate synthase PF555_05725 IPR040442 Pyruvate kinase-like domain superfamily PF555_05725 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain superfamily PF555_05725 IPR018274 PEP-utilising enzyme, active site PF555_05725 IPR002192 Pyruvate phosphate dikinase, PEP/pyruvate-binding PF555_05725 IPR023151 PEP-utilising enzyme, conserved site PF555_05725 IPR036637 Phosphohistidine domain superfamily PF555_05730 IPR026530 Phosphoenolpyruvate synthase regulatory protein PF555_05730 IPR005177 Bifunctional kinase-pyrophosphorylase PF555_05740 IPR032772 Poly-beta-1,6-N-acetyl-D-glucosamine N-deacetylase PgaB, C-terminal PF555_05740 IPR023854 Poly-beta-1,6-N-acetyl-D-glucosamine N-deacetylase PgaB PF555_05740 IPR002509 NodB homology domain PF555_05740 IPR011330 Glycoside hydrolase/deacetylase, beta/alpha-barrel PF555_05745 IPR023853 Poly-beta-1,6 N-acetyl-D-glucosamine synthase PgaC/IcaA PF555_05745 IPR001173 Glycosyltransferase 2-like PF555_05745 IPR029044 Nucleotide-diphospho-sugar transferases PF555_05750 IPR023829 Poly-beta-1,6-N-acetyl-D-glucosamine biosynthesis protein PgaD PF555_05760 IPR011251 Luciferase-like domain PF555_05760 IPR036661 Luciferase-like domain superfamily PF555_05760 IPR019949 Luciferase family oxidoreductase, group 1 PF555_05775 IPR005119 LysR, substrate-binding PF555_05775 IPR000847 Transcription regulator HTH, LysR PF555_05775 IPR036388 Winged helix-like DNA-binding domain superfamily PF555_05775 IPR036390 Winged helix DNA-binding domain superfamily PF555_05785 IPR004373 Peptide chain release factor 1 PF555_05785 IPR000352 Peptide chain release factor class I PF555_05785 IPR005139 Peptide chain release factor PF555_05790 IPR019874 Protein-(glutamine-N5) methyltransferase, release factor-specific PF555_05790 IPR040758 Release factor glutamine methyltransferase, N-terminal domain PF555_05790 IPR025714 Methyltransferase domain PF555_05790 IPR004556 Methyltransferase HemK-like PF555_05790 IPR002052 DNA methylase, N-6 adenine-specific, conserved site PF555_05790 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase PF555_05795 IPR009057 Homeobox-like domain superfamily PF555_05795 IPR018060 DNA binding HTH domain, AraC-type PF555_05795 IPR018062 HTH domain AraC-type, conserved site PF555_05795 IPR020449 Transcription regulator HTH, AraC- type PF555_05800 IPR036291 NAD(P)-binding domain superfamily PF555_05800 IPR020904 Short-chain dehydrogenase/reductase, conserved site PF555_05800 IPR002347 Short-chain dehydrogenase/reductase SDR PF555_05805 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily PF555_05805 IPR006091 Acyl-CoA oxidase/dehydrogenase, central domain PF555_05805 IPR037069 Acyl-CoA dehydrogenase/oxidase, N-terminal domain superfamily PF555_05805 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal PF555_05805 IPR036250 Acyl-CoA dehydrogenase-like, C-terminal PF555_05805 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal PF555_05805 IPR006089 Acyl-CoA dehydrogenase, conserved site PF555_05810 IPR042099 AMP-dependent synthetase-like superfamily PF555_05810 IPR000873 AMP-dependent synthetase/ligase PF555_05810 IPR020845 AMP-binding, conserved site PF555_05810 IPR025110 AMP-binding enzyme, C-terminal domain PF555_05815 IPR012349 FMN-binding split barrel PF555_05815 IPR002563 Flavin reductase like domain PF555_05820 IPR012730 Molybdopterin synthase sulfurylase MoeB PF555_05820 IPR000594 THIF-type NAD/FAD binding fold PF555_05820 IPR035985 Ubiquitin-activating enzyme PF555_05825 IPR004147 UbiB domain PF555_05825 IPR000719 Protein kinase domain PF555_05825 IPR011009 Protein kinase-like domain superfamily PF555_05830 IPR006157 Dihydroneopterin aldolase/epimerase domain PF555_05830 IPR006156 Dihydroneopterin aldolase PF555_05840 IPR023298 P-type ATPase, transmembrane domain superfamily PF555_05840 IPR004623 Potassium-transporting ATPase A chain PF555_05845 IPR023299 P-type ATPase, cytoplasmic domain N PF555_05845 IPR018303 P-type ATPase, phosphorylation site PF555_05845 IPR023298 P-type ATPase, transmembrane domain superfamily PF555_05845 IPR008250 P-type ATPase, A domain superfamily PF555_05845 IPR006391 P-type ATPase, B chain, subfamily IA PF555_05845 IPR036412 HAD-like superfamily PF555_05845 IPR001757 P-type ATPase PF555_05850 IPR003820 Potassium-transporting ATPase C chain PF555_05855 IPR029016 GAF-like domain superfamily PF555_05855 IPR003594 Histidine kinase/HSP90-like ATPase PF555_05855 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain PF555_05855 IPR038318 KdpD, transmembrane domain superfamily PF555_05855 IPR025201 Sensor protein KdpD, transmembrane domain PF555_05855 IPR027417 P-loop containing nucleoside triphosphate hydrolase PF555_05855 IPR004358 Signal transduction histidine kinase-related protein, C-terminal PF555_05855 IPR003852 Signal transduction histidine kinase, osmosensitive K+ channel sensor, N-terminal PF555_05855 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily PF555_05855 IPR036890 Histidine kinase/HSP90-like ATPase superfamily PF555_05855 IPR005467 Histidine kinase domain PF555_05860 IPR011006 CheY-like superfamily PF555_05860 IPR001867 OmpR/PhoB-type DNA-binding domain PF555_05860 IPR036388 Winged helix-like DNA-binding domain superfamily PF555_05860 IPR001789 Signal transduction response regulator, receiver domain PF555_05860 IPR039420 Transcriptional regulatory protein WalR-like PF555_05865 IPR008146 Glutamine synthetase, catalytic domain PF555_05865 IPR036651 Glutamine synthetase, N-terminal domain superfamily PF555_05865 IPR014746 Glutamine synthetase/guanido kinase, catalytic domain PF555_05865 IPR027303 Glutamine synthetase, glycine-rich site PF555_05870 IPR004291 Transposase, IS66 PF555_05870 IPR024463 Transposase TnpC, homeodomain PF555_05870 IPR024474 Zinc-finger binding domain of transposase IS66 PF555_05870 IPR039552 Transposase IS66, C-terminal PF555_05880 IPR009057 Homeobox-like domain superfamily PF555_05890 IPR009078 Ferritin-like superfamily PF555_05890 IPR011566 Ubiquinone biosynthesis protein Coq7 PF555_05895 IPR023727 Lysophospholipid transporter LplT PF555_05895 IPR011701 Major facilitator superfamily PF555_05895 IPR036259 MFS transporter superfamily PF555_05900 IPR000184 Bacterial surface antigen (D15) PF555_05900 IPR010827 POTRA domain, BamA/TamA-like PF555_05900 IPR039910 Surface antigen D15-like PF555_05900 IPR034746 POTRA domain PF555_05900 IPR035243 TamA, POTRA domain 1 PF555_05915 IPR015933 Aconitase B, HEAT-like domain PF555_05915 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain PF555_05915 IPR015928 Aconitase/3-isopropylmalate dehydratase, swivel PF555_05915 IPR015931 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha, subdomain 1/3 PF555_05915 IPR004406 Aconitase B PF555_05915 IPR036008 Aconitase, iron-sulfur domain PF555_05915 IPR036288 Aconitase B, HEAT-like domain superfamily PF555_05915 IPR015929 Aconitase B, swivel PF555_05915 IPR015932 Aconitase, domain 2 PF555_05915 IPR018136 Aconitase family, 4Fe-4S cluster binding site PF555_05925 IPR018490 Cyclic nucleotide-binding-like PF555_05925 IPR018488 Cyclic nucleotide-binding, conserved site PF555_05925 IPR000595 Cyclic nucleotide-binding domain PF555_05925 IPR005821 Ion transport domain PF555_05925 IPR014710 RmlC-like jelly roll fold PF555_05925 IPR028325 Voltage-gated potassium channel PF555_05930 IPR036259 MFS transporter superfamily PF555_05930 IPR011701 Major facilitator superfamily PF555_05930 IPR020846 Major facilitator superfamily domain PF555_05945 IPR005119 LysR, substrate-binding PF555_05945 IPR037406 HTH-type transcriptional regulator MetR, PBP2 domain PF555_05945 IPR000847 Transcription regulator HTH, LysR PF555_05945 IPR036388 Winged helix-like DNA-binding domain superfamily PF555_05945 IPR036390 Winged helix DNA-binding domain superfamily PF555_05950 IPR007382 Uncharacterised protein family UPF0756, transmembrame PF555_05960 IPR042092 Pseudouridine synthase, RsuA/RluB/E/F, catalytic domain PF555_05960 IPR020103 Pseudouridine synthase, catalytic domain superfamily PF555_05960 IPR006145 Pseudouridine synthase, RsuA/RluA PF555_05960 IPR000748 Pseudouridine synthase, RsuA/RluB/E/F PF555_05960 IPR018496 Pseudouridine synthase, RsuA/RluB/E/F, conserved site PF555_05960 IPR002942 RNA-binding S4 domain PF555_05960 IPR036986 RNA-binding S4 domain superfamily PF555_05975 IPR006145 Pseudouridine synthase, RsuA/RluA PF555_05975 IPR006224 Pseudouridine synthase, RluC/RluD, conserved site PF555_05975 IPR006225 Pseudouridine synthase, RluC/RluD PF555_05975 IPR002942 RNA-binding S4 domain PF555_05975 IPR020103 Pseudouridine synthase, catalytic domain superfamily PF555_05975 IPR036986 RNA-binding S4 domain superfamily PF555_05980 IPR027417 P-loop containing nucleoside triphosphate hydrolase PF555_05980 IPR003442 tRNA threonylcarbamoyl adenosine modification protein TsaE PF555_05985 IPR042120 MutL, C-terminal domain, dimerisation subdomain PF555_05985 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup PF555_05985 IPR020568 Ribosomal protein S5 domain 2-type fold PF555_05985 IPR042121 MutL, C-terminal domain, regulatory subdomain PF555_05985 IPR020667 DNA mismatch repair protein, MutL PF555_05985 IPR002099 DNA mismatch repair protein family, N-terminal PF555_05985 IPR013507 DNA mismatch repair protein, S5 domain 2-like PF555_05985 IPR036890 Histidine kinase/HSP90-like ATPase superfamily PF555_05985 IPR038973 DNA mismatch repair protein MutL/Mlh/Pms PF555_05985 IPR037198 MutL, C-terminal domain superfamily PF555_05985 IPR014790 MutL, C-terminal, dimerisation PF555_05985 IPR014762 DNA mismatch repair, conserved site PF555_05990 IPR039657 Dimethylallyltransferase PF555_05990 IPR027417 P-loop containing nucleoside triphosphate hydrolase PF555_05990 IPR018022 IPP transferase PF555_05995 IPR010920 LSM domain superfamily PF555_05995 IPR005001 RNA-binding protein Hfq PF555_06005 IPR029479 Nitroreductase PF555_06005 IPR000415 Nitroreductase-like PF555_06005 IPR033878 Nitroreductase NfsB-like PF555_06015 IPR004843 Calcineurin-like phosphoesterase domain, ApaH type PF555_06015 IPR010138 UDP-2,3-diacylglucosamine hydrolase PF555_06020 IPR029000 Cyclophilin-like domain superfamily PF555_06020 IPR024936 Cyclophilin-type peptidyl-prolyl cis-trans isomerase PF555_06020 IPR020892 Cyclophilin-type peptidyl-prolyl cis-trans isomerase, conserved site PF555_06020 IPR002130 Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain PF555_06025 IPR000924 Glutamyl/glutaminyl-tRNA synthetase PF555_06025 IPR020061 Glutamine-tRNA ligase, alpha-bundle domain superfamily PF555_06025 IPR020056 Ribosomal protein L25/Gln-tRNA synthetase, N-terminal PF555_06025 IPR011035 Ribosomal protein L25/Gln-tRNA synthetase, anti-codon-binding domain superfamily PF555_06025 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold PF555_06025 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site PF555_06025 IPR020059 Glutamyl/glutaminyl-tRNA synthetase, class Ib, anti-codon binding domain PF555_06025 IPR022861 Glutamine-tRNA ligase, bacterial PF555_06025 IPR004514 Glutamine-tRNA synthetase PF555_06025 IPR020058 Glutamyl/glutaminyl-tRNA synthetase, class Ib, catalytic domain PF555_06030 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold PF555_06030 IPR022310 NAD/GMP synthase PF555_06030 IPR025777 GMP synthetase ATP pyrophosphatase domain PF555_06030 IPR022955 GMP synthase PF555_06030 IPR001674 GMP synthase, C-terminal PF555_06030 IPR017926 Glutamine amidotransferase PF555_06030 IPR029062 Class I glutamine amidotransferase-like PF555_06030 IPR004739 GMP synthase, glutamine amidotransferase PF555_06035 IPR009246 Ethanolamine ammonia-lyase light chain PF555_06035 IPR042251 Ethanolamine ammonia-lyase light chain, C-terminal PF555_06035 IPR042255 Ethanolamine ammonia-lyase light chain, N-terminal PF555_06040 IPR013785 Aldolase-type TIM barrel PF555_06040 IPR010628 Ethanolamine ammonia lyase large subunit PF555_06045 IPR002293 Amino acid/polyamine transporter I PF555_06050 IPR016160 Aldehyde dehydrogenase, cysteine active site PF555_06050 IPR016161 Aldehyde/histidinol dehydrogenase PF555_06050 IPR029510 Aldehyde dehydrogenase, glutamic acid active site PF555_06050 IPR016162 Aldehyde dehydrogenase, N-terminal PF555_06050 IPR015590 Aldehyde dehydrogenase domain PF555_06050 IPR016163 Aldehyde dehydrogenase, C-terminal PF555_06055 IPR029016 GAF-like domain superfamily PF555_06065 IPR001670 Alcohol dehydrogenase, iron-type/glycerol dehydrogenase GldA PF555_06065 IPR018211 Alcohol dehydrogenase, iron-type, conserved site PF555_06065 IPR039697 Iron-type alcohol dehydrogenase-like PF555_06070 IPR003593 AAA+ ATPase domain PF555_06070 IPR010285 DNA helicase Pif1-like PF555_06070 IPR029491 Helicase Helix-turn-helix domain PF555_06070 IPR027417 P-loop containing nucleoside triphosphate hydrolase PF555_06080 IPR029442 GyrI-like small molecule binding domain PF555_06080 IPR010499 Bacterial transcription activator, effector binding PF555_06080 IPR011256 Regulatory factor, effector binding domain superfamily PF555_06085 IPR029056 Ribokinase-like PF555_06085 IPR000417 Hydroxyethylthiazole kinase PF555_06100 IPR024601 Peptidase M1, alanyl aminopeptidase, C-terminal PF555_06100 IPR012779 Peptidase M1, alanyl aminopeptidase PF555_06100 IPR037144 Peptidase M1, alanyl aminopeptidase, C-terminal domain superfamily PF555_06100 IPR001930 Peptidase M1, alanine aminopeptidase/leukotriene A4 hydrolase PF555_06100 IPR014782 Peptidase M1, membrane alanine aminopeptidase PF555_06100 IPR035414 Peptidase M1, alanyl aminopeptidase, Ig-like fold PF555_06100 IPR042097 Aminopeptidase N-like , N-terminal PF555_06100 IPR038438 Alanyl aminopeptidase, Ig-like domain superfamily PF555_06100 IPR027268 Peptidase M4/M1, CTD superfamily PF555_06115 IPR000015 Outer membrane usher protein PF555_06115 IPR018030 Fimbrial membrane usher, conserved site PF555_06115 IPR042186 Outer membrane usher protein FimD, plug domain PF555_06115 IPR025949 PapC-like, C-terminal domain PF555_06115 IPR037224 PapC, N-terminal domain superfamily PF555_06115 IPR025885 PapC, N-terminal domain PF555_06140 IPR002701 Chorismate mutase II, prokaryotic-type PF555_06140 IPR036263 Chorismate mutase type II superfamily PF555_06140 IPR008240 Chorismate mutase, periplasmic PF555_06145 IPR036390 Winged helix DNA-binding domain superfamily PF555_06145 IPR036388 Winged helix-like DNA-binding domain superfamily PF555_06145 IPR019885 Transcription regulator HTH, AsnC-type, conserved site PF555_06145 IPR019887 Transcription regulator AsnC/Lrp, ligand binding domain PF555_06145 IPR019888 Transcription regulator AsnC-type PF555_06145 IPR000485 AsnC-type HTH domain PF555_06145 IPR011991 ArsR-like helix-turn-helix domain PF555_06145 IPR011008 Dimeric alpha-beta barrel PF555_06155 IPR001647 DNA-binding HTH domain, TetR-type PF555_06155 IPR009057 Homeobox-like domain superfamily PF555_06160 IPR012910 TonB-dependent receptor, plug domain PF555_06160 IPR039426 Vitamin B12 transporter BtuB-like PF555_06160 IPR037066 TonB-dependent receptor, plug domain superfamily PF555_06160 IPR000531 TonB-dependent receptor-like, beta-barrel PF555_06160 IPR036942 TonB-dependent receptor-like, beta-barrel domain superfamily PF555_06160 IPR010105 TonB-dependent siderophore receptor PF555_06165 IPR010920 LSM domain superfamily PF555_06165 IPR006685 Mechanosensitive ion channel MscS PF555_06165 IPR011066 Mechanosensitive ion channel MscS, C-terminal PF555_06165 IPR030192 Miniconductance mechanosensitive channel YbdG PF555_06195 IPR010105 TonB-dependent siderophore receptor PF555_06195 IPR010916 TonB box, conserved site PF555_06195 IPR000531 TonB-dependent receptor-like, beta-barrel PF555_06195 IPR037066 TonB-dependent receptor, plug domain superfamily PF555_06195 IPR010917 TonB-dependent receptor, conserved site PF555_06195 IPR012910 TonB-dependent receptor, plug domain PF555_06195 IPR039423 TonB-dependent receptor-like PF555_06195 IPR036942 TonB-dependent receptor-like, beta-barrel domain superfamily PF555_06215 IPR027417 P-loop containing nucleoside triphosphate hydrolase PF555_06215 IPR017871 ABC transporter, conserved site PF555_06215 IPR003439 ABC transporter-like PF555_06215 IPR032781 ABC-transporter extension domain PF555_06215 IPR003593 AAA+ ATPase domain PF555_06220 IPR006016 UspA PF555_06220 IPR006015 Universal stress protein A family PF555_06220 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold PF555_06245 IPR036412 HAD-like superfamily PF555_06245 IPR006068 Cation-transporting P-type ATPase, C-terminal PF555_06245 IPR004014 Cation-transporting P-type ATPase, N-terminal PF555_06245 IPR023299 P-type ATPase, cytoplasmic domain N PF555_06245 IPR018303 P-type ATPase, phosphorylation site PF555_06245 IPR023298 P-type ATPase, transmembrane domain superfamily PF555_06245 IPR001757 P-type ATPase PF555_06245 IPR006415 P-type ATPase, subfamily IIIB PF555_06245 IPR023214 HAD superfamily PF555_06245 IPR008250 P-type ATPase, A domain superfamily PF555_06250 IPR003416 MgtC/SapB/SrpB/YhiD family PF555_06255 IPR004711 Benzoate transporter PF555_06260 IPR000485 AsnC-type HTH domain PF555_06260 IPR036390 Winged helix DNA-binding domain superfamily PF555_06260 IPR036388 Winged helix-like DNA-binding domain superfamily PF555_06260 IPR019885 Transcription regulator HTH, AsnC-type, conserved site PF555_06260 IPR019887 Transcription regulator AsnC/Lrp, ligand binding domain PF555_06260 IPR019888 Transcription regulator AsnC-type PF555_06260 IPR011991 ArsR-like helix-turn-helix domain PF555_06260 IPR011008 Dimeric alpha-beta barrel PF555_06270 IPR009057 Homeobox-like domain superfamily PF555_06280 IPR039552 Transposase IS66, C-terminal PF555_06280 IPR004291 Transposase, IS66 PF555_06280 IPR024463 Transposase TnpC, homeodomain PF555_06280 IPR024474 Zinc-finger binding domain of transposase IS66 PF555_06290 IPR018225 Transaldolase, active site PF555_06290 IPR013785 Aldolase-type TIM barrel PF555_06290 IPR001585 Transaldolase/Fructose-6-phosphate aldolase PF555_06290 IPR004730 Transaldolase type 1 PF555_06295 IPR036390 Winged helix DNA-binding domain superfamily PF555_06295 IPR036388 Winged helix-like DNA-binding domain superfamily PF555_06295 IPR000847 Transcription regulator HTH, LysR PF555_06295 IPR005119 LysR, substrate-binding PF555_06305 IPR020613 Thiolase, conserved site PF555_06305 IPR020610 Thiolase, active site PF555_06305 IPR016039 Thiolase-like PF555_06305 IPR002155 Thiolase PF555_06305 IPR012806 Acetyl-CoA C-acyltransferase FadI PF555_06305 IPR020616 Thiolase, N-terminal PF555_06305 IPR020617 Thiolase, C-terminal PF555_06310 IPR002347 Short-chain dehydrogenase/reductase SDR PF555_06310 IPR011284 3-oxoacyl-(acyl-carrier-protein) reductase PF555_06310 IPR020904 Short-chain dehydrogenase/reductase, conserved site PF555_06310 IPR036291 NAD(P)-binding domain superfamily PF555_06315 IPR002539 MaoC-like dehydratase domain PF555_06315 IPR029069 HotDog domain superfamily PF555_06315 IPR003965 Fatty acid synthase PF555_06320 IPR012338 Beta-lactamase/transpeptidase-like PF555_06320 IPR001466 Beta-lactamase-related PF555_06330 IPR036259 MFS transporter superfamily PF555_06330 IPR020846 Major facilitator superfamily domain PF555_06330 IPR011701 Major facilitator superfamily PF555_06335 IPR008921 DNA polymerase III, clamp loader complex, gamma/delta/delta subunit, C-terminal PF555_06335 IPR021029 DNA polymerase III, tau subunit, domain V PF555_06335 IPR038249 DNA polymerase III, tau subunit, C-terminal domain superfamily PF555_06335 IPR012763 DNA polymerase III, subunit gamma/ tau PF555_06335 IPR022754 DNA polymerase III, gamma subunit, domain III PF555_06335 IPR022001 DNA polymerase III subunit tau, DnaB-binding domain IV PF555_06335 IPR001270 ClpA/B family PF555_06335 IPR003593 AAA+ ATPase domain PF555_06335 IPR027417 P-loop containing nucleoside triphosphate hydrolase PF555_06345 IPR017850 Alkaline-phosphatase-like, core domain superfamily PF555_06345 IPR017767 Bacterial phospholipase C, phosphocholine-specific PF555_06345 IPR007312 Phosphoesterase PF555_06345 IPR008475 Bacterial phospholipase C, C-terminal domain PF555_06345 IPR006311 Twin-arginine translocation pathway, signal sequence PF555_06350 IPR029069 HotDog domain superfamily PF555_06350 IPR006683 Thioesterase domain PF555_06355 IPR001670 Alcohol dehydrogenase, iron-type/glycerol dehydrogenase GldA PF555_06355 IPR039697 Iron-type alcohol dehydrogenase-like PF555_06355 IPR018211 Alcohol dehydrogenase, iron-type, conserved site PF555_06365 IPR017867 Protein-tyrosine phosphatase, low molecular weight PF555_06365 IPR036196 Phosphotyrosine protein phosphatase I superfamily PF555_06365 IPR023485 Phosphotyrosine protein phosphatase I PF555_06370 IPR006094 FAD linked oxidase, N-terminal PF555_06370 IPR011601 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal PF555_06370 IPR003170 UDP-N-acetylenolpyruvoylglucosamine reductase PF555_06370 IPR016169 FAD-binding, type PCMH, subdomain 2 PF555_06370 IPR016167 FAD-binding, type PCMH, subdomain 1 PF555_06370 IPR036318 FAD-binding, type PCMH-like superfamily PF555_06370 IPR016166 FAD-binding domain, PCMH-type PF555_06370 IPR036635 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain superfamily PF555_06385 IPR024188 Glutamate synthase large subunit-like protein PF555_06385 IPR013785 Aldolase-type TIM barrel PF555_06385 IPR002932 Glutamate synthase domain PF555_06385 IPR027283 Glutamate synthase large subunit-like protein, bacteria PF555_06405 IPR026032 Probable 3-phenylpropionic acid transporter PF555_06405 IPR036259 MFS transporter superfamily PF555_06405 IPR024989 Major facilitator superfamily associated domain PF555_06415 IPR013815 ATP-grasp fold, subdomain 1 PF555_06415 IPR011054 Rudiment single hybrid motif PF555_06415 IPR016185 Pre-ATP-grasp domain superfamily PF555_06415 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain PF555_06415 IPR005482 Biotin carboxylase, C-terminal PF555_06415 IPR011764 Biotin carboxylation domain PF555_06415 IPR005481 Biotin carboxylase-like, N-terminal domain PF555_06415 IPR011761 ATP-grasp fold PF555_06415 IPR004549 Acetyl-CoA carboxylase, biotin carboxylase PF555_06420 IPR001249 Acetyl-CoA biotin carboxyl carrier PF555_06420 IPR011053 Single hybrid motif PF555_06420 IPR001882 Biotin-binding site PF555_06420 IPR000089 Biotin/lipoyl attachment PF555_06425 IPR001874 Dehydroquinase, class II PF555_06425 IPR018509 Dehydroquinase, class II, conserved site PF555_06425 IPR036441 Dehydroquinase, class II superfamily PF555_06430 IPR036775 DNA polymerase, Y-family, little finger domain superfamily PF555_06430 IPR017961 DNA polymerase, Y-family, little finger domain PF555_06430 IPR025188 Domain of unknown function DUF4113 PF555_06430 IPR001126 UmuC domain PF555_06435 IPR003593 AAA+ ATPase domain PF555_06435 IPR003439 ABC transporter-like PF555_06435 IPR005890 Nitrate transport ATP-binding subunit C/D PF555_06435 IPR027417 P-loop containing nucleoside triphosphate hydrolase PF555_06435 IPR017871 ABC transporter, conserved site PF555_06440 IPR001789 Signal transduction response regulator, receiver domain PF555_06440 IPR011006 CheY-like superfamily PF555_06440 IPR001867 OmpR/PhoB-type DNA-binding domain PF555_06440 IPR016032 Signal transduction response regulator, C-terminal effector PF555_06440 IPR036388 Winged helix-like DNA-binding domain superfamily PF555_06440 IPR039420 Transcriptional regulatory protein WalR-like PF555_06450 IPR041575 NADH-rubredoxin oxidoreductase, C-terminal PF555_06450 IPR036922 Rieske [2Fe-2S] iron-sulphur domain superfamily PF555_06450 IPR006067 Nitrite/sulphite reductase 4Fe-4S domain PF555_06450 IPR006066 Nitrite/sulphite reductase iron-sulphur/sirohaem-binding site PF555_06450 IPR012744 Nitrite reductase [NAD(P)H] large subunit, NirB PF555_06450 IPR012748 Rieske-like [2Fe-2S] domain, NirD-type PF555_06450 IPR007419 BFD-like [2Fe-2S]-binding domain PF555_06450 IPR041854 BFD-like [2Fe-2S]-binding domain superfamily PF555_06450 IPR036188 FAD/NAD(P)-binding domain superfamily PF555_06450 IPR036136 Nitrite/Sulfite reductase ferredoxin-like domain superfamily PF555_06450 IPR023753 FAD/NAD(P)-binding domain PF555_06450 IPR005117 Nitrite/Sulfite reductase ferredoxin-like domain PF555_06455 IPR041575 NADH-rubredoxin oxidoreductase, C-terminal PF555_06455 IPR006066 Nitrite/sulphite reductase iron-sulphur/sirohaem-binding site PF555_06455 IPR016156 FAD/NAD-linked reductase, dimerisation domain superfamily PF555_06455 IPR017121 Nitrite reductase [NAD(P)H], large subunit PF555_06455 IPR006067 Nitrite/sulphite reductase 4Fe-4S domain PF555_06455 IPR041854 BFD-like [2Fe-2S]-binding domain superfamily PF555_06455 IPR036188 FAD/NAD(P)-binding domain superfamily PF555_06455 IPR023753 FAD/NAD(P)-binding domain PF555_06455 IPR005117 Nitrite/Sulfite reductase ferredoxin-like domain PF555_06455 IPR036136 Nitrite/Sulfite reductase ferredoxin-like domain superfamily PF555_06455 IPR007419 BFD-like [2Fe-2S]-binding domain PF555_06455 IPR012744 Nitrite reductase [NAD(P)H] large subunit, NirB PF555_06460 IPR006657 Molybdopterin dinucleotide-binding domain PF555_06460 IPR041957 Nitrate reductase NapA-like, molybdopterin-binding domain PF555_06460 IPR041854 BFD-like [2Fe-2S]-binding domain superfamily PF555_06460 IPR006963 Molybdopterin oxidoreductase, 4Fe-4S domain PF555_06460 IPR027467 Molybdopterin oxidoreductase, molybdopterin cofactor binding site PF555_06460 IPR009010 Aspartate decarboxylase-like domain superfamily PF555_06460 IPR007419 BFD-like [2Fe-2S]-binding domain PF555_06460 IPR006656 Molybdopterin oxidoreductase PF555_06465 IPR013482 Molybdenum cofactor guanylyltransferase PF555_06465 IPR029044 Nucleotide-diphospho-sugar transferases PF555_06465 IPR025877 MobA-like NTP transferase PF555_06470 IPR009010 Aspartate decarboxylase-like domain superfamily PF555_06470 IPR006656 Molybdopterin oxidoreductase PF555_06470 IPR006963 Molybdopterin oxidoreductase, 4Fe-4S domain PF555_06470 IPR027467 Molybdopterin oxidoreductase, molybdopterin cofactor binding site PF555_06470 IPR041957 Nitrate reductase NapA-like, molybdopterin-binding domain PF555_06470 IPR006657 Molybdopterin dinucleotide-binding domain PF555_06475 IPR000385 MoaA/nifB/pqqE, iron-sulphur binding, conserved site PF555_06475 IPR007197 Radical SAM PF555_06475 IPR010505 Molybdenum cofactor synthesis C-terminal PF555_06475 IPR013483 Molybdenum cofactor biosynthesis protein A PF555_06475 IPR013785 Aldolase-type TIM barrel PF555_06475 IPR006638 Elp3/MiaB/NifB PF555_06485 IPR036563 Molybdopterin biosynthesis MoaE subunit superfamily PF555_06485 IPR003448 Molybdopterin biosynthesis MoaE PF555_06490 IPR002820 Molybdopterin cofactor biosynthesis C (MoaC) domain PF555_06490 IPR036522 Molybdopterin cofactor biosynthesis C (MoaC) domain superfamily PF555_06490 IPR012247 Bifunctional molybdenum cofactor biosynthesis protein MoaC/MogA PF555_06490 IPR023045 Molybdenum cofactor biosynthesis C PF555_06490 IPR036425 MoaB/Mog-like domain superfamily PF555_06490 IPR001453 MoaB/Mog domain PF555_06495 IPR036425 MoaB/Mog-like domain superfamily PF555_06495 IPR001453 MoaB/Mog domain PF555_06495 IPR008284 Molybdenum cofactor biosynthesis, conserved site PF555_06495 IPR038987 Molybdopterin biosynthesis protein MoeA-like PF555_06495 IPR005111 MoeA, C-terminal, domain IV PF555_06495 IPR036688 MoeA, C-terminal, domain IV superfamily PF555_06495 IPR005110 MoeA, N-terminal and linker domain PF555_06495 IPR036135 MoeA, N-terminal and linker domain superfamily PF555_06500 IPR036390 Winged helix DNA-binding domain superfamily PF555_06500 IPR036388 Winged helix-like DNA-binding domain superfamily PF555_06500 IPR002577 Helix-turn-helix, HxlR type PF555_06500 IPR011991 ArsR-like helix-turn-helix domain PF555_06505 IPR036390 Winged helix DNA-binding domain superfamily PF555_06505 IPR036388 Winged helix-like DNA-binding domain superfamily PF555_06505 IPR000524 Transcription regulator HTH, GntR PF555_06505 IPR015421 Pyridoxal phosphate-dependent transferase, major domain PF555_06505 IPR015424 Pyridoxal phosphate-dependent transferase PF555_06505 IPR004839 Aminotransferase, class I/classII PF555_06505 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 PF555_06510 IPR000620 EamA domain PF555_06530 IPR027396 DsrEFH-like PF555_06530 IPR003787 Sulphur relay, DsrE/F-like protein PF555_06530 IPR017463 Sulphur relay, TusD/DsrE PF555_06535 IPR016040 NAD(P)-binding domain PF555_06535 IPR036291 NAD(P)-binding domain superfamily PF555_06535 IPR005886 UDP-glucose 4-epimerase PF555_06540 IPR022761 Fumarate lyase, N-terminal PF555_06540 IPR005677 Fumarate hydratase, class II PF555_06540 IPR024083 Fumarase/histidase, N-terminal PF555_06540 IPR018951 Fumarase C, C-terminal PF555_06540 IPR008948 L-Aspartase-like PF555_06540 IPR000362 Fumarate lyase family PF555_06540 IPR020557 Fumarate lyase, conserved site PF555_06565 IPR006076 FAD dependent oxidoreductase PF555_06565 IPR023080 D-amino acid dehydrogenase DadA PF555_06565 IPR036188 FAD/NAD(P)-binding domain superfamily PF555_06575 IPR003526 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase PF555_06575 IPR036571 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase superfamily PF555_06575 IPR020555 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, conserved site PF555_06585 IPR006130 Aspartate/ornithine carbamoyltransferase PF555_06585 IPR036901 Aspartate/ornithine carbamoyltransferase superfamily PF555_06585 IPR006131 Aspartate/ornithine carbamoyltransferase, Asp/Orn-binding domain PF555_06585 IPR024904 Ornithine carbamoyltransferase PF555_06585 IPR006132 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding PF555_06585 IPR002292 Ornithine/putrescine carbamoyltransferase PF555_06605 IPR025662 Sigma-54 interaction domain, ATP-binding site 1 PF555_06605 IPR003593 AAA+ ATPase domain PF555_06605 IPR009057 Homeobox-like domain superfamily PF555_06605 IPR002197 DNA binding HTH domain, Fis-type PF555_06605 IPR027417 P-loop containing nucleoside triphosphate hydrolase PF555_06605 IPR001789 Signal transduction response regulator, receiver domain PF555_06605 IPR002078 RNA polymerase sigma factor 54 interaction domain PF555_06605 IPR011006 CheY-like superfamily PF555_06605 IPR025944 Sigma-54 interaction domain, conserved site PF555_06605 IPR010114 DNA-binding transcriptional regulator NtrC PF555_06605 IPR025943 Sigma-54 interaction domain, ATP-binding site 2 PF555_06610 IPR004358 Signal transduction histidine kinase-related protein, C-terminal PF555_06610 IPR035965 PAS domain superfamily PF555_06610 IPR000014 PAS domain PF555_06610 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily PF555_06610 IPR013767 PAS fold PF555_06610 IPR005467 Histidine kinase domain PF555_06610 IPR036890 Histidine kinase/HSP90-like ATPase superfamily PF555_06610 IPR003594 Histidine kinase/HSP90-like ATPase PF555_06610 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain PF555_06620 IPR023404 Radical SAM, alpha/beta horseshoe PF555_06620 IPR006638 Elp3/MiaB/NifB PF555_06620 IPR005839 Methylthiotransferase PF555_06620 IPR020612 Methylthiotransferase, conserved site PF555_06620 IPR013848 Methylthiotransferase, N-terminal PF555_06620 IPR038135 Methylthiotransferase, N-terminal domain superfamily PF555_06620 IPR041582 RimO, TRAM domain PF555_06620 IPR007197 Radical SAM PF555_06620 IPR002792 TRAM domain PF555_06620 IPR005840 Ribosomal protein S12 methylthiotransferase RimO PF555_06625 IPR036393 Acetylglutamate kinase-like superfamily PF555_06625 IPR001048 Aspartate/glutamate/uridylate kinase PF555_06625 IPR011817 Uridylate kinase PF555_06625 IPR015963 Uridylate kinase, bacteria PF555_06630 IPR002661 Ribosome recycling factor PF555_06630 IPR023584 Ribosome recycling factor domain PF555_06630 IPR036191 RRF superfamily PF555_06635 IPR018520 Di-trans-poly-cis-decaprenylcistransferase-like, conserved site PF555_06635 IPR001441 Decaprenyl diphosphate synthase-like PF555_06635 IPR036424 Decaprenyl diphosphate synthase-like superfamily PF555_06640 IPR000374 Phosphatidate cytidylyltransferase PF555_06645 IPR003821 1-deoxy-D-xylulose 5-phosphate reductoisomerase PF555_06645 IPR013644 1-deoxy-D-xylulose 5-phosphate reductoisomerase, C-terminal PF555_06645 IPR013512 1-deoxy-D-xylulose 5-phosphate reductoisomerase, N-terminal PF555_06645 IPR026877 DXP reductoisomerase C-terminal domain PF555_06645 IPR036169 DXP reductoisomerase, C-terminal domain superfamily PF555_06645 IPR036291 NAD(P)-binding domain superfamily PF555_06650 IPR008915 Peptidase M50 PF555_06650 IPR041489 PDZ domain 6 PF555_06650 IPR001478 PDZ domain PF555_06650 IPR004387 Peptidase M50, putative membrane-associated zinc metallopeptidase PF555_06650 IPR036034 PDZ superfamily PF555_06655 IPR023707 Outer membrane protein assembly factor BamA PF555_06655 IPR034746 POTRA domain PF555_06655 IPR010827 POTRA domain, BamA/TamA-like PF555_06655 IPR039910 Surface antigen D15-like PF555_06655 IPR000184 Bacterial surface antigen (D15) PF555_06665 IPR001451 Hexapeptide repeat PF555_06665 IPR007691 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase LpxD PF555_06665 IPR011004 Trimeric LpxA-like superfamily PF555_06665 IPR020573 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, non-repeat region PF555_06670 IPR029069 HotDog domain superfamily PF555_06670 IPR013114 Beta-hydroxydecanoyl thiol ester dehydrase, FabA/FabZ PF555_06670 IPR010084 Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabZ PF555_06675 IPR011004 Trimeric LpxA-like superfamily PF555_06675 IPR010137 Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase PF555_06675 IPR018357 Hexapeptide transferase, conserved site PF555_06675 IPR001451 Hexapeptide repeat PF555_06675 IPR037157 UDP-N-acetylglucosamine O-acyltransferase, C-terminal domain superfamily PF555_06675 IPR029098 UDP N-acetylglucosamine O-acyltransferase, C-terminal PF555_06690 IPR036388 Winged helix-like DNA-binding domain superfamily PF555_06690 IPR003783 Regulatory protein RecX PF555_06695 IPR020584 DNA recombination/repair protein RecA, conserved site PF555_06695 IPR013765 DNA recombination and repair protein RecA PF555_06695 IPR003593 AAA+ ATPase domain PF555_06695 IPR020587 DNA recombination and repair protein RecA, monomer-monomer interface PF555_06695 IPR020588 DNA recombination and repair protein RecA-like, ATP-binding domain PF555_06695 IPR027417 P-loop containing nucleoside triphosphate hydrolase PF555_06695 IPR023400 DNA recombination and repair protein RecA, C-terminal PF555_06700 IPR036986 RNA-binding S4 domain superfamily PF555_06700 IPR002942 RNA-binding S4 domain PF555_06700 IPR025708 Heat shock protein 15 PF555_06705 IPR036412 HAD-like superfamily PF555_06705 IPR006439 HAD hydrolase, subfamily IA PF555_06705 IPR041492 Haloacid dehalogenase-like hydrolase PF555_06705 IPR023214 HAD superfamily PF555_06730 IPR036390 Winged helix DNA-binding domain superfamily PF555_06730 IPR019887 Transcription regulator AsnC/Lrp, ligand binding domain PF555_06730 IPR019888 Transcription regulator AsnC-type PF555_06730 IPR011008 Dimeric alpha-beta barrel PF555_06730 IPR000485 AsnC-type HTH domain PF555_06730 IPR011991 ArsR-like helix-turn-helix domain PF555_06730 IPR019885 Transcription regulator HTH, AsnC-type, conserved site PF555_06730 IPR036388 Winged helix-like DNA-binding domain superfamily PF555_06735 IPR015424 Pyridoxal phosphate-dependent transferase PF555_06735 IPR010111 Kynureninase PF555_06735 IPR000192 Aminotransferase class V domain PF555_06735 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 PF555_06735 IPR015421 Pyridoxal phosphate-dependent transferase, major domain PF555_06740 IPR004841 Amino acid permease/ SLC12A domain PF555_06740 IPR004840 Amino acid permease, conserved site PF555_06755 IPR000209 Peptidase S8/S53 domain PF555_06755 IPR037045 Peptidase S8 propeptide/proteinase inhibitor I9 superfamily PF555_06755 IPR010259 Peptidase S8 propeptide/proteinase inhibitor I9 PF555_06755 IPR015500 Peptidase S8, subtilisin-related PF555_06755 IPR023828 Peptidase S8, subtilisin, Ser-active site PF555_06755 IPR034193 Proteinase K-like catalytic domain PF555_06755 IPR022398 Peptidase S8, subtilisin, His-active site PF555_06755 IPR036852 Peptidase S8/S53 domain superfamily PF555_06755 IPR023827 Peptidase S8, subtilisin, Asp-active site PF555_06765 IPR024463 Transposase TnpC, homeodomain PF555_06765 IPR024474 Zinc-finger binding domain of transposase IS66 PF555_06765 IPR004291 Transposase, IS66 PF555_06765 IPR039552 Transposase IS66, C-terminal PF555_06775 IPR009057 Homeobox-like domain superfamily PF555_06780 IPR036513 STAS domain superfamily PF555_06780 IPR001902 SLC26A/SulP transporter PF555_06780 IPR002645 STAS domain PF555_06780 IPR018045 Sulphate anion transporter, conserved site PF555_06780 IPR011547 SLC26A/SulP transporter domain PF555_06785 IPR003738 SOS response associated peptidase (SRAP) PF555_06785 IPR036590 SOS response associated peptidase-like PF555_06790 IPR019893 PQQ-dependent dehydrogenase, s-GDH family PF555_06790 IPR012938 Glucose/Sorbosone dehydrogenase PF555_06790 IPR011041 Soluble quinoprotein glucose/sorbosone dehydrogenase PF555_06790 IPR011042 Six-bladed beta-propeller, TolB-like PF555_06800 IPR009057 Homeobox-like domain superfamily PF555_06810 IPR004291 Transposase, IS66 PF555_06810 IPR024463 Transposase TnpC, homeodomain PF555_06810 IPR024474 Zinc-finger binding domain of transposase IS66 PF555_06810 IPR039552 Transposase IS66, C-terminal PF555_06820 IPR001633 EAL domain PF555_06820 IPR035919 EAL domain superfamily PF555_06820 IPR000160 GGDEF domain PF555_06820 IPR005330 MHYT domain PF555_06820 IPR029787 Nucleotide cyclase PF555_06820 IPR035965 PAS domain superfamily PF555_06835 IPR003353 Phosphotransferase system, fructose-specific IIB subunit PF555_06835 IPR006327 Phosphotransferase system, fructose IIC component PF555_06835 IPR013014 Phosphotransferase system, EIIC component, type 2 PF555_06835 IPR003352 Phosphotransferase system, EIIC PF555_06835 IPR003501 Phosphotransferase system, EIIB component, type 2/3 PF555_06835 IPR013011 Phosphotransferase system, EIIB component, type 2 PF555_06835 IPR036095 PTS system IIB component-like superfamily PF555_06840 IPR022463 Fructose 1-phosphate kinase PF555_06840 IPR002173 Carbohydrate/puine kinase, PfkB, conserved site PF555_06840 IPR011611 Carbohydrate kinase PfkB PF555_06840 IPR029056 Ribokinase-like PF555_06840 IPR017583 Tagatose/fructose phosphokinase PF555_06845 IPR001020 Phosphotransferase system, HPr histidine phosphorylation site PF555_06845 IPR002114 Phosphotransferase system, HPr serine phosphorylation site PF555_06845 IPR008731 Phosphotransferase system, enzyme I N-terminal PF555_06845 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain superfamily PF555_06845 IPR040442 Pyruvate kinase-like domain superfamily PF555_06845 IPR036618 PtsI, HPr-binding domain superfamily PF555_06845 IPR002178 PTS EIIA type-2 domain PF555_06845 IPR008279 PEP-utilising enzyme, mobile domain PF555_06845 IPR016152 Phosphotransferase/anion transporter PF555_06845 IPR036637 Phosphohistidine domain superfamily PF555_06845 IPR023151 PEP-utilising enzyme, conserved site PF555_06845 IPR000121 PEP-utilising enzyme, C-terminal PF555_06845 IPR018274 PEP-utilising enzyme, active site PF555_06845 IPR006318 Phosphotransferase system, enzyme I-like PF555_06845 IPR035895 HPr-like superfamily PF555_06845 IPR000032 Phosphocarrier protein HPr-like PF555_06870 IPR004685 Branched-chain amino acid transport system II carrier protein PF555_06875 IPR001714 Peptidase M24, methionine aminopeptidase PF555_06875 IPR036005 Creatinase/aminopeptidase-like PF555_06875 IPR000994 Peptidase M24 PF555_06875 IPR002467 Peptidase M24A, methionine aminopeptidase, subfamily 1 PF555_06880 IPR036388 Winged helix-like DNA-binding domain superfamily PF555_06880 IPR036390 Winged helix DNA-binding domain superfamily PF555_06880 IPR000847 Transcription regulator HTH, LysR PF555_06880 IPR005119 LysR, substrate-binding PF555_06890 IPR014434 Monothiol glutaredoxin PF555_06890 IPR004480 Monothiol glutaredoxin-related PF555_06890 IPR033658 Glutaredoxin, PICOT-like PF555_06890 IPR002109 Glutaredoxin PF555_06890 IPR036249 Thioredoxin-like superfamily PF555_06895 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 PF555_06895 IPR004636 Acetylornithine/Succinylornithine transaminase family PF555_06895 IPR005814 Aminotransferase class-III PF555_06895 IPR015424 Pyridoxal phosphate-dependent transferase PF555_06895 IPR015421 Pyridoxal phosphate-dependent transferase, major domain PF555_06900 IPR001093 IMP dehydrogenase/GMP reductase PF555_06900 IPR015875 IMP dehydrogenase / GMP reductase, conserved site PF555_06900 IPR005990 Inosine-5'-monophosphate dehydrogenase PF555_06900 IPR000644 CBS domain PF555_06900 IPR013785 Aldolase-type TIM barrel PF555_06925 IPR042101 Signal recognition particle SRP54, N-terminal domain superfamily PF555_06925 IPR003593 AAA+ ATPase domain PF555_06925 IPR027417 P-loop containing nucleoside triphosphate hydrolase PF555_06925 IPR013822 Signal recognition particle SRP54, helical bundle PF555_06925 IPR004390 Signal-recognition particle receptor FtsY PF555_06925 IPR036225 SRP/SRP receptor, N-terminal PF555_06925 IPR000897 Signal recognition particle, SRP54 subunit, GTPase domain PF555_06935 IPR018635 Uncharacterised protein family UPF0319 PF555_06945 IPR012994 Membrane bound YbgT-like PF555_06945 IPR011724 Cyd operon protein YbgT PF555_06950 IPR003317 Cytochrome ubiquinol oxidase subunit 2 PF555_06955 IPR002585 Cytochrome ubiquinol oxidase subunit 1 PF555_06965 IPR024474 Zinc-finger binding domain of transposase IS66 PF555_06965 IPR039552 Transposase IS66, C-terminal PF555_06965 IPR004291 Transposase, IS66 PF555_06965 IPR024463 Transposase TnpC, homeodomain PF555_06975 IPR009057 Homeobox-like domain superfamily PF555_06980 IPR010840 Protein of unknown function DUF1449 PF555_06990 IPR011611 Carbohydrate kinase PfkB PF555_06990 IPR029056 Ribokinase-like PF555_06990 IPR002173 Carbohydrate/puine kinase, PfkB, conserved site PF555_06995 IPR000531 TonB-dependent receptor-like, beta-barrel PF555_06995 IPR039423 TonB-dependent receptor-like PF555_06995 IPR037066 TonB-dependent receptor, plug domain superfamily PF555_06995 IPR012910 TonB-dependent receptor, plug domain PF555_06995 IPR036942 TonB-dependent receptor-like, beta-barrel domain superfamily PF555_06995 IPR010917 TonB-dependent receptor, conserved site PF555_06995 IPR010105 TonB-dependent siderophore receptor PF555_07000 IPR011249 Metalloenzyme, LuxS/M16 peptidase-like PF555_07000 IPR011765 Peptidase M16, N-terminal PF555_07000 IPR007863 Peptidase M16, C-terminal PF555_07000 IPR013578 Peptidase M16C associated PF555_07005 IPR003187 Phospholipase A1 PF555_07005 IPR036541 Phospholipase A1 superfamily PF555_07010 IPR003445 Cation transporter PF555_07010 IPR004772 TrkH potassium transport family PF555_07015 IPR036291 NAD(P)-binding domain superfamily PF555_07015 IPR006037 Regulator of K+ conductance, C-terminal PF555_07015 IPR036721 Regulator of K+ conductance, C-terminal domain superfamily PF555_07015 IPR003148 Regulator of K+ conductance, N-terminal PF555_07020 IPR001721 Threonine dehydratase, ACT-like domain PF555_07020 IPR036052 Tryptophan synthase beta subunit-like PLP-dependent enzyme PF555_07020 IPR005787 Threonine dehydratase, biosynthetic PF555_07020 IPR038110 Threonine dehydratase, ACT-like domain superfamily PF555_07020 IPR000634 Serine/threonine dehydratase, pyridoxal-phosphate-binding site PF555_07020 IPR001926 Pyridoxal-phosphate dependent enzyme PF555_07025 IPR020672 Ribose-5-phosphate isomerase, type A, subgroup PF555_07025 IPR037171 NagB/RpiA transferase-like PF555_07025 IPR004788 Ribose 5-phosphate isomerase, type A PF555_07040 IPR023013 N-acetyl-gamma-glutamyl-phosphate reductase, active site PF555_07040 IPR012280 Semialdehyde dehydrogenase, dimerisation domain PF555_07040 IPR000706 N-acetyl-gamma-glutamyl-phosphate reductase, type 1 PF555_07040 IPR036291 NAD(P)-binding domain superfamily PF555_07040 IPR000534 Semialdehyde dehydrogenase, NAD-binding PF555_07050 IPR014719 Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-like PF555_07050 IPR003769 Adaptor protein ClpS, core PF555_07050 IPR022935 ATP-dependent Clp protease adaptor protein ClpS PF555_07055 IPR027417 P-loop containing nucleoside triphosphate hydrolase PF555_07055 IPR041546 ClpA/ClpB, AAA lid domain PF555_07055 IPR028299 ClpA/B, conserved site 2 PF555_07055 IPR003593 AAA+ ATPase domain PF555_07055 IPR001270 ClpA/B family PF555_07055 IPR013461 ATP-dependent Clp protease ATP-binding subunit ClpA PF555_07055 IPR004176 Clp, N-terminal PF555_07055 IPR018368 ClpA/B, conserved site 1 PF555_07055 IPR019489 Clp ATPase, C-terminal PF555_07055 IPR003959 ATPase, AAA-type, core PF555_07055 IPR036628 Clp, N-terminal domain superfamily PF555_07060 IPR003844 Uncharacterised protein family UPF0060 PF555_07065 IPR013785 Aldolase-type TIM barrel PF555_07065 IPR006219 DHAP synthase, class 1 PF555_07065 IPR006218 DAHP synthetase I/KDSA PF555_07080 IPR001155 NADH:flavin oxidoreductase/NADH oxidase, N-terminal PF555_07080 IPR023753 FAD/NAD(P)-binding domain PF555_07080 IPR036188 FAD/NAD(P)-binding domain superfamily PF555_07080 IPR013785 Aldolase-type TIM barrel PF555_07110 IPR017926 Glutamine amidotransferase PF555_07110 IPR033828 CTP synthase GATase domain PF555_07110 IPR027417 P-loop containing nucleoside triphosphate hydrolase PF555_07110 IPR004468 CTP synthase PF555_07110 IPR029062 Class I glutamine amidotransferase-like PF555_07110 IPR017456 CTP synthase, N-terminal PF555_07115 IPR013785 Aldolase-type TIM barrel PF555_07115 IPR006269 3-deoxy-8-phosphooctulonate synthase PF555_07115 IPR006218 DAHP synthetase I/KDSA PF555_07120 IPR020811 Enolase, N-terminal PF555_07120 IPR029017 Enolase-like, N-terminal PF555_07120 IPR020810 Enolase, C-terminal TIM barrel domain PF555_07120 IPR020809 Enolase, conserved site PF555_07120 IPR000941 Enolase PF555_07120 IPR036849 Enolase-like, C-terminal domain superfamily PF555_07125 IPR023090 UPF0702, alpha/beta domain superfamily PF555_07125 IPR007353 Protein of unknown function DUF421 PF555_07130 IPR023081 Cell division protein FtsB PF555_07130 IPR007060 Septum formation initiator FtsL/DivIC PF555_07135 IPR034683 Cytidylyltransferase IspD/TarI PF555_07135 IPR001228 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase PF555_07135 IPR029044 Nucleotide-diphospho-sugar transferases PF555_07135 IPR018294 4-diphosphocytidyl-2C-methyl-D-erythritol synthase, conserved site PF555_07140 IPR012792 3-oxoacid CoA-transferase, subunit A PF555_07140 IPR004165 Coenzyme A transferase family I PF555_07140 IPR004163 Coenzyme A transferase binding site PF555_07140 IPR037171 NagB/RpiA transferase-like PF555_07145 IPR004164 Coenzyme A transferase active site PF555_07145 IPR004165 Coenzyme A transferase family I PF555_07145 IPR012791 3-oxoacid CoA-transferase, subunit B PF555_07145 IPR037171 NagB/RpiA transferase-like PF555_07150 IPR012793 Beta-ketoadipyl CoA thiolase PF555_07150 IPR002155 Thiolase PF555_07150 IPR016039 Thiolase-like PF555_07150 IPR020610 Thiolase, active site PF555_07150 IPR020617 Thiolase, C-terminal PF555_07150 IPR020613 Thiolase, conserved site PF555_07150 IPR020616 Thiolase, N-terminal PF555_07150 IPR020615 Thiolase, acyl-enzyme intermediate active site PF555_07155 IPR019468 Adenylosuccinate lyase C-terminal PF555_07155 IPR008948 L-Aspartase-like PF555_07155 IPR012789 3-carboxy-cis,cis-muconate cycloisomerase PF555_07155 IPR024083 Fumarase/histidase, N-terminal PF555_07155 IPR000362 Fumarate lyase family PF555_07155 IPR022761 Fumarate lyase, N-terminal PF555_07155 IPR020557 Fumarate lyase, conserved site PF555_07160 IPR026968 3-oxoadipate enol-lactonase 1/2 PF555_07160 IPR029058 Alpha/Beta hydrolase fold PF555_07160 IPR000073 Alpha/beta hydrolase fold-1 PF555_07165 IPR004746 Major facilitator superfamily, aromatic acid:H+ symporter family PF555_07165 IPR020846 Major facilitator superfamily domain PF555_07165 IPR036259 MFS transporter superfamily PF555_07165 IPR011701 Major facilitator superfamily PF555_07165 IPR005829 Sugar transporter, conserved site PF555_07170 IPR029032 AhpD-like PF555_07170 IPR003779 Carboxymuconolactone decarboxylase-like PF555_07170 IPR012788 4-carboxymuconolactone decarboxylase PF555_07175 IPR000627 Intradiol ring-cleavage dioxygenase, C-terminal PF555_07175 IPR015889 Intradiol ring-cleavage dioxygenase, core PF555_07175 IPR012785 Protocatechuate 3,4-dioxygenase, beta subunit PF555_07175 IPR024756 Protocatechuate 3,4-dioxygenase beta subunit, N-terminal PF555_07180 IPR015889 Intradiol ring-cleavage dioxygenase, core PF555_07180 IPR012786 Protocatechuate 3,4-dioxygenase, alpha subunit PF555_07180 IPR000627 Intradiol ring-cleavage dioxygenase, C-terminal PF555_07185 IPR018508 3-dehydroquinate dehydratase, active site PF555_07185 IPR013785 Aldolase-type TIM barrel PF555_07185 IPR001381 3-dehydroquinate dehydratase type I PF555_07190 IPR011050 Pectin lyase fold/virulence factor PF555_07190 IPR012334 Pectin lyase fold PF555_07190 IPR006626 Parallel beta-helix repeat PF555_07190 IPR007742 Periplasmic copper-binding protein NosD, beta helix domain PF555_07195 IPR038673 Carbohydrate-selective porin OprB superfamily PF555_07195 IPR007049 Carbohydrate-selective porin OprB PF555_07200 IPR018391 Pyrrolo-quinoline quinone beta-propeller repeat PF555_07200 IPR002372 Pyrrolo-quinoline quinone repeat PF555_07200 IPR017511 PQQ-dependent membrane bound dehydrogenase PF555_07200 IPR011047 Quinoprotein alcohol dehydrogenase-like superfamily PF555_07200 IPR001479 Quinoprotein dehydrogenase, conserved site PF555_07210 IPR007272 Sulphur transport domain PF555_07220 IPR001279 Metallo-beta-lactamase PF555_07220 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like PF555_07225 IPR036390 Winged helix DNA-binding domain superfamily PF555_07225 IPR029016 GAF-like domain superfamily PF555_07225 IPR012794 Beta-ketoadipate transcriptional regulator, PcaR/PcaU/PobR PF555_07225 IPR014757 Transcription regulator IclR, C-terminal PF555_07225 IPR005471 Transcription regulator IclR, N-terminal PF555_07225 IPR036388 Winged helix-like DNA-binding domain superfamily PF555_07230 IPR036390 Winged helix DNA-binding domain superfamily PF555_07230 IPR005119 LysR, substrate-binding PF555_07230 IPR037416 Nodulation protein D, PBP2 PF555_07230 IPR000847 Transcription regulator HTH, LysR PF555_07230 IPR036388 Winged helix-like DNA-binding domain superfamily PF555_07235 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal PF555_07235 IPR037069 Acyl-CoA dehydrogenase/oxidase, N-terminal domain superfamily PF555_07235 IPR036250 Acyl-CoA dehydrogenase-like, C-terminal PF555_07235 IPR006091 Acyl-CoA oxidase/dehydrogenase, central domain PF555_07235 IPR006089 Acyl-CoA dehydrogenase, conserved site PF555_07235 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal PF555_07235 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily PF555_07250 IPR002347 Short-chain dehydrogenase/reductase SDR PF555_07250 IPR020904 Short-chain dehydrogenase/reductase, conserved site PF555_07250 IPR036291 NAD(P)-binding domain superfamily PF555_07260 IPR011701 Major facilitator superfamily PF555_07260 IPR020846 Major facilitator superfamily domain PF555_07260 IPR036259 MFS transporter superfamily PF555_07270 IPR000120 Amidase PF555_07270 IPR020556 Amidase, conserved site PF555_07270 IPR023631 Amidase signature domain PF555_07270 IPR036928 Amidase signature (AS) superfamily PF555_07270 IPR004412 Glutamyl-tRNA(Gln) amidotransferase A subunit PF555_07275 IPR013107 Acyl-CoA dehydrogenase, C-terminal domain PF555_07275 IPR036250 Acyl-CoA dehydrogenase-like, C-terminal PF555_07275 IPR037069 Acyl-CoA dehydrogenase/oxidase, N-terminal domain superfamily PF555_07275 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily PF555_07290 IPR015879 Aromatic-ring-hydroxylating dioxygenase, alpha subunit, C-terminal domain PF555_07290 IPR015881 Aromatic-ring-hydroxylating dioxygenase, 2Fe-2S-binding site PF555_07290 IPR036922 Rieske [2Fe-2S] iron-sulphur domain superfamily PF555_07290 IPR017941 Rieske [2Fe-2S] iron-sulphur domain PF555_07290 IPR001663 Aromatic-ring-hydroxylating dioxygenase, alpha subunit PF555_07290 IPR017639 Benzoate 1,2-dioxygenase, large subunit PF555_07300 IPR036291 NAD(P)-binding domain superfamily PF555_07300 IPR002347 Short-chain dehydrogenase/reductase SDR PF555_07300 IPR011284 3-oxoacyl-(acyl-carrier-protein) reductase PF555_07300 IPR020904 Short-chain dehydrogenase/reductase, conserved site PF555_07305 IPR017927 FAD-binding domain, ferredoxin reductase-type PF555_07305 IPR012675 Beta-grasp domain superfamily PF555_07305 IPR006058 2Fe-2S ferredoxin, iron-sulphur binding site PF555_07305 IPR000951 Phthalate dioxygenase reductase PF555_07305 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain PF555_07305 IPR036010 2Fe-2S ferredoxin-like superfamily PF555_07305 IPR001433 Oxidoreductase FAD/NAD(P)-binding PF555_07305 IPR017938 Riboflavin synthase-like beta-barrel PF555_07305 IPR039261 Ferredoxin-NADP reductase (FNR), nucleotide-binding domain PF555_07310 IPR002563 Flavin reductase like domain PF555_07310 IPR012349 FMN-binding split barrel PF555_07310 IPR036388 Winged helix-like DNA-binding domain superfamily PF555_07310 IPR036390 Winged helix DNA-binding domain superfamily PF555_07315 IPR003313 AraC-type arabinose-binding/dimerisation domain PF555_07315 IPR009057 Homeobox-like domain superfamily PF555_07315 IPR020449 Transcription regulator HTH, AraC- type PF555_07315 IPR037923 Transcription regulator HTH-like PF555_07315 IPR018060 DNA binding HTH domain, AraC-type PF555_07315 IPR023609 Transcription regulator HTH, RhaS PF555_07315 IPR014710 RmlC-like jelly roll fold PF555_07320 IPR016182 Copper amine oxidase, N-terminal PF555_07320 IPR036460 Copper amine oxidase, catalytic domain superfamily PF555_07320 IPR015798 Copper amine oxidase, catalytic domain PF555_07320 IPR012854 Copper amine oxidase-like, N-terminal PF555_07320 IPR000269 Copper amine oxidase PF555_07320 IPR015800 Copper amine oxidase, N2-terminal PF555_07320 IPR036582 Copper amine oxidase-like, N-terminal domain superfamily PF555_07320 IPR015802 Copper amine oxidase, N3-terminal PF555_07330 IPR015590 Aldehyde dehydrogenase domain PF555_07330 IPR016161 Aldehyde/histidinol dehydrogenase PF555_07330 IPR016163 Aldehyde dehydrogenase, C-terminal PF555_07330 IPR016162 Aldehyde dehydrogenase, N-terminal PF555_07330 IPR016160 Aldehyde dehydrogenase, cysteine active site PF555_07330 IPR029510 Aldehyde dehydrogenase, glutamic acid active site PF555_07335 IPR014395 Penicillin/GL-7-ACA/AHL acylase PF555_07335 IPR023343 Penicillin amidase type, domain 1 PF555_07335 IPR033813 Penicillin G acylase, C-terminal PF555_07335 IPR002692 Penicillin/GL-7-ACA/AHL/aculeacin-A acylase PF555_07335 IPR029055 Nucleophile aminohydrolases, N-terminal PF555_07340 IPR026968 3-oxoadipate enol-lactonase 1/2 PF555_07340 IPR000073 Alpha/beta hydrolase fold-1 PF555_07340 IPR029058 Alpha/Beta hydrolase fold PF555_07340 IPR022742 Serine aminopeptidase, S33 PF555_07345 IPR020616 Thiolase, N-terminal PF555_07345 IPR020617 Thiolase, C-terminal PF555_07345 IPR020610 Thiolase, active site PF555_07345 IPR020615 Thiolase, acyl-enzyme intermediate active site PF555_07345 IPR016039 Thiolase-like PF555_07345 IPR020613 Thiolase, conserved site PF555_07345 IPR012793 Beta-ketoadipyl CoA thiolase PF555_07345 IPR002155 Thiolase PF555_07350 IPR004165 Coenzyme A transferase family I PF555_07350 IPR004164 Coenzyme A transferase active site PF555_07350 IPR012791 3-oxoacid CoA-transferase, subunit B PF555_07350 IPR037171 NagB/RpiA transferase-like PF555_07355 IPR037171 NagB/RpiA transferase-like PF555_07355 IPR004163 Coenzyme A transferase binding site PF555_07355 IPR004165 Coenzyme A transferase family I PF555_07355 IPR012792 3-oxoacid CoA-transferase, subunit A PF555_07360 IPR007535 Catechol dioxygenase, N-terminal PF555_07360 IPR015889 Intradiol ring-cleavage dioxygenase, core PF555_07360 IPR000627 Intradiol ring-cleavage dioxygenase, C-terminal PF555_07360 IPR012801 Catechol 1,2-dioxygenase, proteobacteria PF555_07365 IPR011008 Dimeric alpha-beta barrel PF555_07365 IPR026029 Muconolactone isomerase domain PF555_07365 IPR003464 Muconolactone delta-isomerase PF555_07370 IPR013341 Mandelate racemase/muconate lactonizing enzyme, N-terminal domain PF555_07370 IPR013342 Mandelate racemase/muconate lactonizing enzyme, C-terminal PF555_07370 IPR013370 Muconate/chloromuconate cycloisomerase PF555_07370 IPR036849 Enolase-like, C-terminal domain superfamily PF555_07370 IPR029017 Enolase-like, N-terminal PF555_07370 IPR029065 Enolase C-terminal domain-like PF555_07370 IPR018110 Mandelate racemase/muconate lactonizing enzyme, conserved site PF555_07375 IPR005119 LysR, substrate-binding PF555_07375 IPR000847 Transcription regulator HTH, LysR PF555_07375 IPR036388 Winged helix-like DNA-binding domain superfamily PF555_07375 IPR036390 Winged helix DNA-binding domain superfamily PF555_07385 IPR011711 GntR, C-terminal PF555_07385 IPR008920 Transcription regulator FadR/GntR, C-terminal PF555_07385 IPR000524 Transcription regulator HTH, GntR PF555_07385 IPR036390 Winged helix DNA-binding domain superfamily PF555_07385 IPR036388 Winged helix-like DNA-binding domain superfamily PF555_07390 IPR037237 IlvD/EDD, N-terminal domain PF555_07390 IPR020558 Dihydroxy-acid/6-phosphogluconate dehydratase, conserved site PF555_07390 IPR000581 Dihydroxy-acid/6-phosphogluconate dehydratase PF555_07390 IPR042096 Dihydroxy-acid dehydratase, C-terminal PF555_07395 IPR036259 MFS transporter superfamily PF555_07395 IPR011701 Major facilitator superfamily PF555_07395 IPR020846 Major facilitator superfamily domain PF555_07405 IPR016163 Aldehyde dehydrogenase, C-terminal PF555_07405 IPR015590 Aldehyde dehydrogenase domain PF555_07405 IPR016162 Aldehyde dehydrogenase, N-terminal PF555_07405 IPR016161 Aldehyde/histidinol dehydrogenase PF555_07415 IPR000073 Alpha/beta hydrolase fold-1 PF555_07415 IPR029058 Alpha/Beta hydrolase fold PF555_07415 IPR000639 Epoxide hydrolase-like PF555_07420 IPR036188 FAD/NAD(P)-binding domain superfamily PF555_07420 IPR013785 Aldolase-type TIM barrel PF555_07420 IPR023753 FAD/NAD(P)-binding domain PF555_07420 IPR001155 NADH:flavin oxidoreductase/NADH oxidase, N-terminal PF555_07435 IPR015358 Transcription regulator MerR, DNA binding PF555_07435 IPR000551 MerR-type HTH domain PF555_07435 IPR011789 Cu(I)-responsive transcriptional regulator PF555_07435 IPR009061 Putative DNA-binding domain superfamily PF555_07445 IPR036188 FAD/NAD(P)-binding domain superfamily PF555_07445 IPR023753 FAD/NAD(P)-binding domain PF555_07455 IPR024884 N-acyl-phosphatidylethanolamine-hydrolysing phospholipase D PF555_07455 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like PF555_07455 IPR001279 Metallo-beta-lactamase PF555_07460 IPR009057 Homeobox-like domain superfamily PF555_07460 IPR001647 DNA-binding HTH domain, TetR-type PF555_07460 IPR036271 Tetracyclin repressor-like, C-terminal domain superfamily PF555_07460 IPR013570 Transcription regulator YsiA, C-terminal PF555_07470 IPR000868 Isochorismatase-like PF555_07470 IPR036380 Isochorismatase-like superfamily PF555_07475 IPR005119 LysR, substrate-binding PF555_07475 IPR036388 Winged helix-like DNA-binding domain superfamily PF555_07475 IPR000847 Transcription regulator HTH, LysR PF555_07475 IPR036390 Winged helix DNA-binding domain superfamily PF555_07480 IPR011042 Six-bladed beta-propeller, TolB-like PF555_07480 IPR019893 PQQ-dependent dehydrogenase, s-GDH family PF555_07480 IPR011041 Soluble quinoprotein glucose/sorbosone dehydrogenase PF555_07480 IPR012938 Glucose/Sorbosone dehydrogenase PF555_07485 IPR003148 Regulator of K+ conductance, N-terminal PF555_07485 IPR036291 NAD(P)-binding domain superfamily PF555_07485 IPR038770 Sodium/solute symporter superfamily PF555_07485 IPR004771 K+/H+ exchanger PF555_07485 IPR006153 Cation/H+ exchanger PF555_07495 IPR002933 Peptidase M20 PF555_07495 IPR036264 Bacterial exopeptidase dimerisation domain PF555_07495 IPR017439 Amidohydrolase PF555_07495 IPR011650 Peptidase M20, dimerisation domain PF555_07505 IPR018117 DNA methylase, C-5 cytosine-specific, active site PF555_07505 IPR031303 DNA methylase, C-5 cytosine-specific, conserved site PF555_07505 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase PF555_07505 IPR001525 C-5 cytosine methyltransferase PF555_07510 IPR036890 Histidine kinase/HSP90-like ATPase superfamily PF555_07510 IPR005467 Histidine kinase domain PF555_07510 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain PF555_07510 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily PF555_07510 IPR029151 Periplasmic sensor-like domain superfamily PF555_07510 IPR004358 Signal transduction histidine kinase-related protein, C-terminal PF555_07510 IPR003594 Histidine kinase/HSP90-like ATPase PF555_07530 IPR036259 MFS transporter superfamily PF555_07530 IPR011701 Major facilitator superfamily PF555_07530 IPR020846 Major facilitator superfamily domain PF555_07535 IPR032466 Metal-dependent hydrolase PF555_07535 IPR006680 Amidohydrolase-related PF555_07545 IPR028978 Chorismate pyruvate-lyase/UbiC transcription regulator-associated domain superfamily PF555_07545 IPR000524 Transcription regulator HTH, GntR PF555_07545 IPR011663 UbiC transcription regulator-associated PF555_07545 IPR036388 Winged helix-like DNA-binding domain superfamily PF555_07545 IPR036390 Winged helix DNA-binding domain superfamily PF555_07550 IPR011042 Six-bladed beta-propeller, TolB-like PF555_07550 IPR005511 Senescence marker protein-30 (SMP-30) PF555_07550 IPR013658 SMP-30/Gluconolactonase/LRE-like region PF555_07560 IPR005119 LysR, substrate-binding PF555_07560 IPR036388 Winged helix-like DNA-binding domain superfamily PF555_07560 IPR036390 Winged helix DNA-binding domain superfamily PF555_07560 IPR000847 Transcription regulator HTH, LysR PF555_07585 IPR005694 Efflux pump membrane protein PF555_07585 IPR032317 RND efflux pump, membrane fusion protein, barrel-sandwich domain PF555_07600 IPR016162 Aldehyde dehydrogenase, N-terminal PF555_07600 IPR016161 Aldehyde/histidinol dehydrogenase PF555_07600 IPR016163 Aldehyde dehydrogenase, C-terminal PF555_07600 IPR015590 Aldehyde dehydrogenase domain PF555_07605 IPR000581 Dihydroxy-acid/6-phosphogluconate dehydratase PF555_07605 IPR020558 Dihydroxy-acid/6-phosphogluconate dehydratase, conserved site PF555_07605 IPR037237 IlvD/EDD, N-terminal domain PF555_07605 IPR042096 Dihydroxy-acid dehydratase, C-terminal PF555_07615 IPR036390 Winged helix DNA-binding domain superfamily PF555_07615 IPR005119 LysR, substrate-binding PF555_07615 IPR000847 Transcription regulator HTH, LysR PF555_07615 IPR036388 Winged helix-like DNA-binding domain superfamily PF555_07620 IPR001509 NAD-dependent epimerase/dehydratase PF555_07620 IPR036291 NAD(P)-binding domain superfamily PF555_07625 IPR036259 MFS transporter superfamily PF555_07625 IPR011701 Major facilitator superfamily PF555_07625 IPR020846 Major facilitator superfamily domain PF555_07630 IPR002204 3-hydroxyisobutyrate dehydrogenase-related, conserved site PF555_07630 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily PF555_07630 IPR013328 6-phosphogluconate dehydrogenase, domain 2 PF555_07630 IPR006115 6-phosphogluconate dehydrogenase, NADP-binding PF555_07630 IPR015815 3-hydroxyisobutyrate dehydrogenase-related PF555_07630 IPR036291 NAD(P)-binding domain superfamily PF555_07630 IPR029154 3-hydroxyisobutyrate dehydrogenase, NAD-binding domain PF555_07630 IPR006398 2-hydroxy-3-oxopropionate reductase PF555_07635 IPR009594 Transcription regulator HTH, AraC, N-terminal PF555_07635 IPR018060 DNA binding HTH domain, AraC-type PF555_07635 IPR009057 Homeobox-like domain superfamily PF555_07650 IPR013154 Alcohol dehydrogenase, N-terminal PF555_07650 IPR002328 Alcohol dehydrogenase, zinc-type, conserved site PF555_07650 IPR011032 GroES-like superfamily PF555_07650 IPR013149 Alcohol dehydrogenase, C-terminal PF555_07650 IPR036291 NAD(P)-binding domain superfamily PF555_07650 IPR020843 Polyketide synthase, enoylreductase domain PF555_07660 IPR000522 ABC transporter, permease protein, BtuC-like PF555_07660 IPR037294 ABC transporter, BtuC-like PF555_07665 IPR017871 ABC transporter, conserved site PF555_07665 IPR027417 P-loop containing nucleoside triphosphate hydrolase PF555_07665 IPR003593 AAA+ ATPase domain PF555_07665 IPR003439 ABC transporter-like PF555_07685 IPR037515 Ribose-phosphate pyrophosphokinase, bacterial-type PF555_07685 IPR000842 Phosphoribosyl pyrophosphate synthetase, conserved site PF555_07685 IPR005946 Ribose-phosphate pyrophosphokinase PF555_07685 IPR029057 Phosphoribosyltransferase-like PF555_07685 IPR029099 Ribose-phosphate pyrophosphokinase, N-terminal domain PF555_07685 IPR000836 Phosphoribosyltransferase domain PF555_07710 IPR039562 Membrane fusion protein, biotin-lipoyl like domain PF555_07715 IPR004638 Drug resistance transporter EmrB-like PF555_07715 IPR020846 Major facilitator superfamily domain PF555_07715 IPR011701 Major facilitator superfamily PF555_07715 IPR036259 MFS transporter superfamily PF555_07740 IPR030048 Survival protein SurE PF555_07740 IPR002828 Survival protein SurE-like phosphatase/nucleotidase PF555_07740 IPR036523 SurE-like phosphatase/nucleotidase superfamily PF555_07750 IPR007685 RelA/SpoT PF555_07750 IPR012676 TGS-like PF555_07750 IPR033655 RelA, TGS domain PF555_07750 IPR004811 RelA/SpoT family PF555_07750 IPR003607 HD/PDEase domain PF555_07750 IPR012675 Beta-grasp domain superfamily PF555_07750 IPR004095 TGS PF555_07750 IPR002912 ACT domain PF555_07755 IPR026875 Phosphohydrolase-associated domain PF555_07755 IPR003607 HD/PDEase domain PF555_07755 IPR023023 dNTP triphosphohydrolase, type 2 PF555_07755 IPR006261 dNTP triphosphohydrolase PF555_07755 IPR006674 HD domain PF555_07775 IPR027417 P-loop containing nucleoside triphosphate hydrolase PF555_07775 IPR003593 AAA+ ATPase domain PF555_07775 IPR003840 DNA helicase PF555_07775 IPR010285 DNA helicase Pif1-like PF555_07805 IPR002347 Short-chain dehydrogenase/reductase SDR PF555_07805 IPR011284 3-oxoacyl-(acyl-carrier-protein) reductase PF555_07805 IPR036291 NAD(P)-binding domain superfamily PF555_07805 IPR020904 Short-chain dehydrogenase/reductase, conserved site PF555_07810 IPR036259 MFS transporter superfamily PF555_07810 IPR011701 Major facilitator superfamily PF555_07810 IPR005829 Sugar transporter, conserved site PF555_07810 IPR004736 MFS transporter, metabolite:H symporter PF555_07810 IPR020846 Major facilitator superfamily domain PF555_07810 IPR005828 Major facilitator, sugar transporter-like PF555_07815 IPR023614 Porin domain superfamily PF555_07815 IPR005318 Outer membrane porin, bacterial PF555_07820 IPR009057 Homeobox-like domain superfamily PF555_07830 IPR039552 Transposase IS66, C-terminal PF555_07830 IPR004291 Transposase, IS66 PF555_07830 IPR024463 Transposase TnpC, homeodomain PF555_07830 IPR024474 Zinc-finger binding domain of transposase IS66 PF555_07835 IPR036390 Winged helix DNA-binding domain superfamily PF555_07835 IPR036388 Winged helix-like DNA-binding domain superfamily PF555_07835 IPR005119 LysR, substrate-binding PF555_07835 IPR000847 Transcription regulator HTH, LysR PF555_07845 IPR029016 GAF-like domain superfamily PF555_07845 IPR014757 Transcription regulator IclR, C-terminal PF555_07845 IPR005471 Transcription regulator IclR, N-terminal PF555_07845 IPR036388 Winged helix-like DNA-binding domain superfamily PF555_07845 IPR036390 Winged helix DNA-binding domain superfamily PF555_07880 IPR001829 Pili assembly chaperone, bacterial PF555_07880 IPR013783 Immunoglobulin-like fold PF555_07880 IPR008962 PapD-like superfamily PF555_07880 IPR016147 Pili assembly chaperone, N-terminal PF555_07880 IPR018046 Pili assembly chaperone, conserved site PF555_07880 IPR036316 Pili assembly chaperone, C-terminal domain superfamily PF555_07880 IPR016148 Pili assembly chaperone, C-terminal PF555_07885 IPR037224 PapC, N-terminal domain superfamily PF555_07885 IPR025949 PapC-like, C-terminal domain PF555_07885 IPR025885 PapC, N-terminal domain PF555_07885 IPR042186 Outer membrane usher protein FimD, plug domain PF555_07885 IPR018030 Fimbrial membrane usher, conserved site PF555_07885 IPR000015 Outer membrane usher protein PF555_07890 IPR008966 Adhesion domain superfamily PF555_07890 IPR036937 Fimbrial-type adhesion domain superfamily PF555_07890 IPR000259 Fimbrial-type adhesion domain PF555_07900 IPR013149 Alcohol dehydrogenase, C-terminal PF555_07900 IPR020843 Polyketide synthase, enoylreductase domain PF555_07900 IPR014183 Alcohol dehydrogenase class III PF555_07900 IPR002328 Alcohol dehydrogenase, zinc-type, conserved site PF555_07900 IPR013154 Alcohol dehydrogenase, N-terminal PF555_07900 IPR011032 GroES-like superfamily PF555_07900 IPR036291 NAD(P)-binding domain superfamily PF555_07910 IPR020835 Catalase superfamily PF555_07910 IPR011614 Catalase core domain PF555_07930 IPR039552 Transposase IS66, C-terminal PF555_07930 IPR004291 Transposase, IS66 PF555_07930 IPR024463 Transposase TnpC, homeodomain PF555_07930 IPR024474 Zinc-finger binding domain of transposase IS66 PF555_07940 IPR009057 Homeobox-like domain superfamily PF555_07960 IPR000180 Membrane dipeptidase, active site PF555_07960 IPR008257 Peptidase M19 PF555_07960 IPR032466 Metal-dependent hydrolase PF555_07965 IPR023885 4Fe4S-binding SPASM domain PF555_07965 IPR013785 Aldolase-type TIM barrel PF555_07965 IPR006638 Elp3/MiaB/NifB PF555_07965 IPR000385 MoaA/nifB/pqqE, iron-sulphur binding, conserved site PF555_07965 IPR011843 Coenzyme PQQ biosynthesis protein E, bacteria PF555_07965 IPR017200 Coenzyme PQQ synthesis protein E PF555_07965 IPR007197 Radical SAM PF555_07970 IPR041881 Coenzyme PQQ synthesis protein D superfamily PF555_07970 IPR022479 Coenzyme PQQ synthesis D, bacteria PF555_07970 IPR008792 Coenzyme PQQ synthesis protein D PF555_07975 IPR016084 Haem oxygenase-like, multi-helical PF555_07975 IPR011845 Coenzyme PQQ biosynthesis protein C PF555_07975 IPR039068 Pyrroloquinoline-quinone synthase-like PF555_07975 IPR004305 Thiaminase-2/PQQC PF555_07980 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like PF555_07980 IPR001279 Metallo-beta-lactamase PF555_07980 IPR011842 Coenzyme PQQ biosynthesis protein B PF555_07985 IPR011725 Coenzyme PQQ biosynthesis protein A PF555_07990 IPR036832 Polyphosphate kinase N-terminal domain superfamily PF555_07990 IPR025198 Polyphosphate kinase N-terminal domain PF555_07990 IPR036830 Polyphosphate kinase middle domain superfamily PF555_07990 IPR025200 Polyphosphate kinase C-terminal domain 2 PF555_07990 IPR041108 Polyphosphate kinase, C-terminal domain 1 PF555_07990 IPR003414 Polyphosphate kinase PF555_07990 IPR024953 Polyphosphate kinase middle domain PF555_07995 IPR029052 Metallo-dependent phosphatase-like PF555_07995 IPR006179 5'-Nucleotidase/apyrase PF555_07995 IPR004843 Calcineurin-like phosphoesterase domain, ApaH type PF555_08005 IPR009081 Phosphopantetheine binding ACP domain PF555_08005 IPR036380 Isochorismatase-like superfamily PF555_08005 IPR000868 Isochorismatase-like PF555_08005 IPR016291 Isochorismatase PF555_08005 IPR036736 ACP-like superfamily PF555_08010 IPR002347 Short-chain dehydrogenase/reductase SDR PF555_08010 IPR020904 Short-chain dehydrogenase/reductase, conserved site PF555_08010 IPR036291 NAD(P)-binding domain superfamily PF555_08010 IPR003560 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase PF555_08015 IPR003439 ABC transporter-like PF555_08015 IPR015852 ABC transporter, molybdenum import, ModC PF555_08015 IPR008995 Molybdate/tungstate binding, C-terminal PF555_08015 IPR011868 Molybdate ABC transporter, ATP-binding protein PF555_08015 IPR004606 Molybdenum-pterin binding PF555_08015 IPR027417 P-loop containing nucleoside triphosphate hydrolase PF555_08015 IPR005116 Transport-associated OB, type 1 PF555_08015 IPR003593 AAA+ ATPase domain PF555_08015 IPR017871 ABC transporter, conserved site PF555_08020 IPR000515 ABC transporter type 1, transmembrane domain MetI-like PF555_08020 IPR035906 MetI-like superfamily PF555_08020 IPR011867 Molybdate ABC transporter, permease protein PF555_08025 IPR005950 Molybdate ABC transporter, substrate-binding protein PF555_08030 IPR003725 Molybdenum-binding protein ModE, N-terminal PF555_08030 IPR004606 Molybdenum-pterin binding PF555_08030 IPR000847 Transcription regulator HTH, LysR PF555_08030 IPR036388 Winged helix-like DNA-binding domain superfamily PF555_08030 IPR036390 Winged helix DNA-binding domain superfamily PF555_08030 IPR008995 Molybdate/tungstate binding, C-terminal PF555_08030 IPR016462 Molybdate-dependent transcriptional regulator ModE PF555_08030 IPR005116 Transport-associated OB, type 1 PF555_08035 IPR017638 Anthranilate 1,2-dioxygenase, large subunit PF555_08035 IPR015879 Aromatic-ring-hydroxylating dioxygenase, alpha subunit, C-terminal domain PF555_08035 IPR001663 Aromatic-ring-hydroxylating dioxygenase, alpha subunit PF555_08035 IPR017941 Rieske [2Fe-2S] iron-sulphur domain PF555_08035 IPR015881 Aromatic-ring-hydroxylating dioxygenase, 2Fe-2S-binding site PF555_08035 IPR036922 Rieske [2Fe-2S] iron-sulphur domain superfamily PF555_08040 IPR000391 Ring-hydroxylating dioxygenase beta subunit PF555_08040 IPR032710 NTF2-like domain superfamily PF555_08040 IPR017640 Anthranilate 1,2-dioxygenase, small subunit PF555_08045 IPR001433 Oxidoreductase FAD/NAD(P)-binding PF555_08045 IPR017938 Riboflavin synthase-like beta-barrel PF555_08045 IPR017927 FAD-binding domain, ferredoxin reductase-type PF555_08045 IPR008333 Flavoprotein pyridine nucleotide cytochrome reductase-like, FAD-binding domain PF555_08045 IPR036010 2Fe-2S ferredoxin-like superfamily PF555_08045 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain PF555_08045 IPR006058 2Fe-2S ferredoxin, iron-sulphur binding site PF555_08045 IPR039261 Ferredoxin-NADP reductase (FNR), nucleotide-binding domain PF555_08045 IPR012675 Beta-grasp domain superfamily PF555_08050 IPR009057 Homeobox-like domain superfamily PF555_08050 IPR035418 Transcription regulator HTH, AraC- type, ligand binding domain-like PF555_08050 IPR018060 DNA binding HTH domain, AraC-type PF555_08050 IPR037923 Transcription regulator HTH-like PF555_08050 IPR018062 HTH domain AraC-type, conserved site PF555_08060 IPR002563 Flavin reductase like domain PF555_08060 IPR036390 Winged helix DNA-binding domain superfamily PF555_08060 IPR012349 FMN-binding split barrel PF555_08060 IPR036388 Winged helix-like DNA-binding domain superfamily PF555_08070 IPR002347 Short-chain dehydrogenase/reductase SDR PF555_08070 IPR020904 Short-chain dehydrogenase/reductase, conserved site PF555_08070 IPR036291 NAD(P)-binding domain superfamily PF555_08075 IPR029058 Alpha/Beta hydrolase fold PF555_08075 IPR002925 Dienelactone hydrolase PF555_08080 IPR020846 Major facilitator superfamily domain PF555_08080 IPR004746 Major facilitator superfamily, aromatic acid:H+ symporter family PF555_08080 IPR005829 Sugar transporter, conserved site PF555_08080 IPR011701 Major facilitator superfamily PF555_08080 IPR036259 MFS transporter superfamily PF555_08085 IPR009594 Transcription regulator HTH, AraC, N-terminal PF555_08085 IPR018060 DNA binding HTH domain, AraC-type PF555_08085 IPR009057 Homeobox-like domain superfamily PF555_08090 IPR011294 3-hydroxybutyrate dehydrogenase PF555_08090 IPR036291 NAD(P)-binding domain superfamily PF555_08090 IPR020904 Short-chain dehydrogenase/reductase, conserved site PF555_08090 IPR002347 Short-chain dehydrogenase/reductase SDR PF555_08095 IPR003474 Gluconate transporter PF555_08105 IPR036271 Tetracyclin repressor-like, C-terminal domain superfamily PF555_08105 IPR001647 DNA-binding HTH domain, TetR-type PF555_08105 IPR009057 Homeobox-like domain superfamily PF555_08125 IPR036388 Winged helix-like DNA-binding domain superfamily PF555_08125 IPR000847 Transcription regulator HTH, LysR PF555_08125 IPR005119 LysR, substrate-binding PF555_08125 IPR036390 Winged helix DNA-binding domain superfamily PF555_08130 IPR012792 3-oxoacid CoA-transferase, subunit A PF555_08130 IPR004165 Coenzyme A transferase family I PF555_08130 IPR004163 Coenzyme A transferase binding site PF555_08130 IPR037171 NagB/RpiA transferase-like PF555_08135 IPR012791 3-oxoacid CoA-transferase, subunit B PF555_08135 IPR004165 Coenzyme A transferase family I PF555_08135 IPR004164 Coenzyme A transferase active site PF555_08135 IPR037171 NagB/RpiA transferase-like PF555_08140 IPR006160 Short chain fatty acid transporter AtoE PF555_08140 IPR006161 Conserved hypothetical protein CHP00336 PF555_08145 IPR016039 Thiolase-like PF555_08145 IPR020616 Thiolase, N-terminal PF555_08145 IPR020613 Thiolase, conserved site PF555_08145 IPR020617 Thiolase, C-terminal PF555_08145 IPR020610 Thiolase, active site PF555_08145 IPR020615 Thiolase, acyl-enzyme intermediate active site PF555_08145 IPR002155 Thiolase PF555_08150 IPR036390 Winged helix DNA-binding domain superfamily PF555_08150 IPR036388 Winged helix-like DNA-binding domain superfamily PF555_08150 IPR000847 Transcription regulator HTH, LysR PF555_08150 IPR005119 LysR, substrate-binding PF555_08155 IPR000847 Transcription regulator HTH, LysR PF555_08155 IPR005119 LysR, substrate-binding PF555_08155 IPR036390 Winged helix DNA-binding domain superfamily PF555_08155 IPR036388 Winged helix-like DNA-binding domain superfamily PF555_08170 IPR008948 L-Aspartase-like PF555_08170 IPR024083 Fumarase/histidase, N-terminal PF555_08170 IPR020557 Fumarate lyase, conserved site PF555_08170 IPR000362 Fumarate lyase family PF555_08170 IPR022761 Fumarate lyase, N-terminal PF555_08170 IPR004708 Aspartate ammonia-lyase PF555_08170 IPR018951 Fumarase C, C-terminal PF555_08175 IPR012910 TonB-dependent receptor, plug domain PF555_08175 IPR037066 TonB-dependent receptor, plug domain superfamily PF555_08175 IPR000531 TonB-dependent receptor-like, beta-barrel PF555_08175 IPR010916 TonB box, conserved site PF555_08175 IPR036942 TonB-dependent receptor-like, beta-barrel domain superfamily PF555_08175 IPR010917 TonB-dependent receptor, conserved site PF555_08175 IPR010105 TonB-dependent siderophore receptor PF555_08175 IPR039423 TonB-dependent receptor-like PF555_08175 IPR030149 TonB-dependent siderophore receptor FcuA/FatA PF555_08180 IPR005828 Major facilitator, sugar transporter-like PF555_08180 IPR005829 Sugar transporter, conserved site PF555_08180 IPR004736 MFS transporter, metabolite:H symporter PF555_08180 IPR036259 MFS transporter superfamily PF555_08180 IPR020846 Major facilitator superfamily domain PF555_08195 IPR017871 ABC transporter, conserved site PF555_08195 IPR003593 AAA+ ATPase domain PF555_08195 IPR003439 ABC transporter-like PF555_08195 IPR015859 ABC transporter, taurine import, TauD PF555_08195 IPR027417 P-loop containing nucleoside triphosphate hydrolase PF555_08200 IPR000515 ABC transporter type 1, transmembrane domain MetI-like PF555_08200 IPR035906 MetI-like superfamily PF555_08200 IPR005889 Nitrate transport permease PF555_08205 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF PF555_08205 IPR010068 Taurine ABC transporter, substrate-binding protein TauA PF555_08205 IPR007210 ABC-type glycine betaine transport system, substrate-binding domain PF555_08220 IPR028978 Chorismate pyruvate-lyase/UbiC transcription regulator-associated domain superfamily PF555_08220 IPR011663 UbiC transcription regulator-associated PF555_08220 IPR000524 Transcription regulator HTH, GntR PF555_08220 IPR036388 Winged helix-like DNA-binding domain superfamily PF555_08220 IPR036390 Winged helix DNA-binding domain superfamily PF555_08225 IPR014047 Chromate transporter, long chain PF555_08225 IPR003370 Chromate transporter PF555_08230 IPR003680 Flavodoxin-like fold PF555_08230 IPR029039 Flavoprotein-like superfamily PF555_08230 IPR023048 NADH-azoreductase, FMN-dependent PF555_08235 IPR002577 Helix-turn-helix, HxlR type PF555_08235 IPR036390 Winged helix DNA-binding domain superfamily PF555_08235 IPR036388 Winged helix-like DNA-binding domain superfamily PF555_08240 IPR010499 Bacterial transcription activator, effector binding PF555_08240 IPR029442 GyrI-like small molecule binding domain PF555_08240 IPR009057 Homeobox-like domain superfamily PF555_08240 IPR018060 DNA binding HTH domain, AraC-type PF555_08240 IPR018062 HTH domain AraC-type, conserved site PF555_08240 IPR011256 Regulatory factor, effector binding domain superfamily PF555_08240 IPR020449 Transcription regulator HTH, AraC- type PF555_08255 IPR002781 Transmembrane protein TauE-like PF555_08270 IPR005939 Beta-lactamase hydrolase-like PF555_08270 IPR001279 Metallo-beta-lactamase PF555_08270 IPR029021 Protein-tyrosine phosphatase-like PF555_08270 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like PF555_08275 IPR003593 AAA+ ATPase domain PF555_08275 IPR011006 CheY-like superfamily PF555_08275 IPR009057 Homeobox-like domain superfamily PF555_08275 IPR002197 DNA binding HTH domain, Fis-type PF555_08275 IPR027417 P-loop containing nucleoside triphosphate hydrolase PF555_08275 IPR001789 Signal transduction response regulator, receiver domain PF555_08275 IPR002078 RNA polymerase sigma factor 54 interaction domain PF555_08275 IPR025943 Sigma-54 interaction domain, ATP-binding site 2 PF555_08275 IPR010114 DNA-binding transcriptional regulator NtrC PF555_08275 IPR025944 Sigma-54 interaction domain, conserved site PF555_08280 IPR021134 Bestrophin/UPF0187 PF555_08285 IPR020843 Polyketide synthase, enoylreductase domain PF555_08285 IPR036291 NAD(P)-binding domain superfamily PF555_08285 IPR011032 GroES-like superfamily PF555_08285 IPR002328 Alcohol dehydrogenase, zinc-type, conserved site PF555_08285 IPR013154 Alcohol dehydrogenase, N-terminal PF555_08285 IPR013149 Alcohol dehydrogenase, C-terminal PF555_08290 IPR036291 NAD(P)-binding domain superfamily PF555_08290 IPR002347 Short-chain dehydrogenase/reductase SDR PF555_08290 IPR014007 Acetoin reductase PF555_08290 IPR020904 Short-chain dehydrogenase/reductase, conserved site PF555_08295 IPR001100 Pyridine nucleotide-disulphide oxidoreductase, class I PF555_08295 IPR012999 Pyridine nucleotide-disulphide oxidoreductase, class I, active site PF555_08295 IPR016156 FAD/NAD-linked reductase, dimerisation domain superfamily PF555_08295 IPR023753 FAD/NAD(P)-binding domain PF555_08295 IPR036188 FAD/NAD(P)-binding domain superfamily PF555_08295 IPR004099 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain PF555_08295 IPR006258 Dihydrolipoamide dehydrogenase PF555_08300 IPR003016 2-oxo acid dehydrogenase, lipoyl-binding site PF555_08300 IPR001078 2-oxoacid dehydrogenase acyltransferase, catalytic domain PF555_08300 IPR000089 Biotin/lipoyl attachment PF555_08300 IPR023213 Chloramphenicol acetyltransferase-like domain superfamily PF555_08300 IPR036625 E3-binding domain superfamily PF555_08300 IPR006257 Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex PF555_08300 IPR011053 Single hybrid motif PF555_08300 IPR004167 Peripheral subunit-binding domain PF555_08305 IPR033248 Transketolase, C-terminal domain PF555_08305 IPR005475 Transketolase-like, pyrimidine-binding domain PF555_08305 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II PF555_08305 IPR029061 Thiamin diphosphate-binding fold PF555_08310 IPR001017 Dehydrogenase, E1 component PF555_08310 IPR029061 Thiamin diphosphate-binding fold PF555_08315 IPR006638 Elp3/MiaB/NifB PF555_08315 IPR007197 Radical SAM PF555_08315 IPR013785 Aldolase-type TIM barrel PF555_08315 IPR003698 Lipoyl synthase PF555_08330 IPR029787 Nucleotide cyclase PF555_08330 IPR000160 GGDEF domain PF555_08330 IPR035965 PAS domain superfamily PF555_08330 IPR000700 PAS-associated, C-terminal PF555_08330 IPR000014 PAS domain PF555_08330 IPR013656 PAS fold-4 PF555_08335 IPR024474 Zinc-finger binding domain of transposase IS66 PF555_08335 IPR024463 Transposase TnpC, homeodomain PF555_08335 IPR004291 Transposase, IS66 PF555_08335 IPR039552 Transposase IS66, C-terminal PF555_08345 IPR009057 Homeobox-like domain superfamily PF555_08350 IPR000453 Chorismate synthase PF555_08350 IPR020541 Chorismate synthase, conserved site PF555_08350 IPR035904 Chorismate synthase AroC superfamily PF555_08355 IPR002052 DNA methylase, N-6 adenine-specific, conserved site PF555_08355 IPR004556 Methyltransferase HemK-like PF555_08355 IPR017127 Ribosomal protein L3-specific, glutamine-N5-methyltransferase PF555_08355 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase PF555_08355 IPR007848 Methyltransferase small domain PF555_08360 IPR006654 Tryptophan synthase, beta chain PF555_08360 IPR036052 Tryptophan synthase beta subunit-like PLP-dependent enzyme PF555_08360 IPR023026 Tryptophan synthase beta chain/beta chain-like PF555_08360 IPR001926 Pyridoxal-phosphate dependent enzyme PF555_08360 IPR006653 Tryptophan synthase, beta chain, conserved site PF555_08370 IPR003959 ATPase, AAA-type, core PF555_08370 IPR000642 Peptidase M41 PF555_08370 IPR041569 AAA ATPase, AAA+ lid domain PF555_08370 IPR003593 AAA+ ATPase domain PF555_08370 IPR037219 Peptidase M41-like PF555_08370 IPR027417 P-loop containing nucleoside triphosphate hydrolase PF555_08370 IPR005936 Peptidase, FtsH PF555_08380 IPR027354 YcgL domain PF555_08380 IPR038068 YcgL-like superfamily PF555_08400 IPR002121 HRDC domain PF555_08400 IPR010997 HRDC-like superfamily PF555_08400 IPR002562 3'-5' exonuclease domain PF555_08400 IPR012337 Ribonuclease H-like superfamily PF555_08400 IPR006292 Ribonuclease D PF555_08400 IPR036397 Ribonuclease H superfamily PF555_08405 IPR034137 RecR, TOPRIM domain PF555_08405 IPR006171 TOPRIM domain PF555_08405 IPR015967 Recombination protein RecR, conserved site PF555_08405 IPR023628 Recombination protein RecR, C4-type zinc finger PF555_08405 IPR023627 Recombination protein RecR PF555_08405 IPR000093 DNA recombination protein RecR PF555_08410 IPR004401 Nucleoid-associated protein YbaB/EbfC family PF555_08410 IPR036894 Nucleoid-associated protein YbaB-like domain superfamily PF555_08420 IPR015421 Pyridoxal phosphate-dependent transferase, major domain PF555_08420 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 PF555_08420 IPR015424 Pyridoxal phosphate-dependent transferase PF555_08420 IPR006234 O-succinylhomoserine sulfhydrylase PF555_08420 IPR000277 Cys/Met metabolism, pyridoxal phosphate-dependent enzyme PF555_08425 IPR010125 Poly(R)-hydroxyalkanoic acid synthase, class III, PhaC subunit PF555_08425 IPR000073 Alpha/beta hydrolase fold-1 PF555_08425 IPR029058 Alpha/Beta hydrolase fold PF555_08430 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase PF555_08430 IPR013216 Methyltransferase type 11 PF555_08460 IPR036265 HIT-like superfamily PF555_08460 IPR039384 HINT family PF555_08460 IPR001310 Histidine triad (HIT) protein PF555_08460 IPR019808 Histidine triad, conserved site PF555_08460 IPR011146 HIT-like domain PF555_08470 IPR024474 Zinc-finger binding domain of transposase IS66 PF555_08470 IPR024463 Transposase TnpC, homeodomain PF555_08470 IPR004291 Transposase, IS66 PF555_08470 IPR039552 Transposase IS66, C-terminal PF555_08480 IPR009057 Homeobox-like domain superfamily PF555_08500 IPR000412 ABC-2 transporter PF555_08505 IPR000412 ABC-2 transporter PF555_08510 IPR027417 P-loop containing nucleoside triphosphate hydrolase PF555_08510 IPR017871 ABC transporter, conserved site PF555_08510 IPR003439 ABC transporter-like PF555_08510 IPR003593 AAA+ ATPase domain PF555_08515 IPR032317 RND efflux pump, membrane fusion protein, barrel-sandwich domain PF555_08525 IPR003835 Glycosyl transferase, family 19 PF555_08530 IPR036942 TonB-dependent receptor-like, beta-barrel domain superfamily PF555_08530 IPR037066 TonB-dependent receptor, plug domain superfamily PF555_08530 IPR010105 TonB-dependent siderophore receptor PF555_08530 IPR010917 TonB-dependent receptor, conserved site PF555_08530 IPR012910 TonB-dependent receptor, plug domain PF555_08530 IPR010916 TonB box, conserved site PF555_08530 IPR039423 TonB-dependent receptor-like PF555_08530 IPR000531 TonB-dependent receptor-like, beta-barrel PF555_08550 IPR002781 Transmembrane protein TauE-like PF555_08555 IPR006219 DHAP synthase, class 1 PF555_08555 IPR006218 DAHP synthetase I/KDSA PF555_08555 IPR013785 Aldolase-type TIM barrel PF555_08560 IPR003805 Adenosylcobinamide-GDP ribazoletransferase PF555_08575 IPR003200 Nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase-like PF555_08575 IPR023195 Nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase, N-terminal PF555_08575 IPR017846 Nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase, prokaryotic PF555_08575 IPR036087 Nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase-like superfamily PF555_08580 IPR003203 Cobinamide kinase/cobinamide phosphate guanyltransferase PF555_08580 IPR027417 P-loop containing nucleoside triphosphate hydrolase PF555_08590 IPR010976 Beta-phosphoglucomutase hydrolase PF555_08590 IPR006439 HAD hydrolase, subfamily IA PF555_08590 IPR041492 Haloacid dehalogenase-like hydrolase PF555_08590 IPR036412 HAD-like superfamily PF555_08590 IPR023214 HAD superfamily PF555_08590 IPR023198 Phosphoglycolate phosphatase-like, domain 2 PF555_08615 IPR010917 TonB-dependent receptor, conserved site PF555_08615 IPR039426 Vitamin B12 transporter BtuB-like PF555_08615 IPR012910 TonB-dependent receptor, plug domain PF555_08615 IPR037066 TonB-dependent receptor, plug domain superfamily PF555_08615 IPR000531 TonB-dependent receptor-like, beta-barrel PF555_08615 IPR010916 TonB box, conserved site PF555_08615 IPR036942 TonB-dependent receptor-like, beta-barrel domain superfamily PF555_08615 IPR010105 TonB-dependent siderophore receptor PF555_08620 IPR036704 Ribonuclease E inhibitor RraA/RraA-like superfamily PF555_08620 IPR005493 Ribonuclease E inhibitor RraA/RraA-like protein PF555_08620 IPR014165 4-carboxy-4-hydroxy-2-oxoadipate aldolase/oxaloacetate decarboxylase PF555_08630 IPR007310 Aerobactin siderophore biosynthesis, IucA/IucC, N-terminal PF555_08630 IPR022770 Ferric iron reductase FhuF domain PF555_08630 IPR037455 Aerobactin siderophore biosynthesis, IucA/IucC-like PF555_08635 IPR007310 Aerobactin siderophore biosynthesis, IucA/IucC, N-terminal PF555_08635 IPR037455 Aerobactin siderophore biosynthesis, IucA/IucC-like PF555_08635 IPR022770 Ferric iron reductase FhuF domain PF555_08640 IPR036259 MFS transporter superfamily PF555_08640 IPR011701 Major facilitator superfamily PF555_08640 IPR020846 Major facilitator superfamily domain PF555_08640 IPR004638 Drug resistance transporter EmrB-like PF555_08645 IPR031043 Putative histamine N-monooxygenase PF555_08645 IPR025700 L-lysine 6-monooxygenase/L-ornithine 5-monooxygenase PF555_08645 IPR036188 FAD/NAD(P)-binding domain superfamily PF555_08650 IPR007310 Aerobactin siderophore biosynthesis, IucA/IucC, N-terminal PF555_08650 IPR022770 Ferric iron reductase FhuF domain PF555_08650 IPR037455 Aerobactin siderophore biosynthesis, IucA/IucC-like PF555_08655 IPR004369 Prolyl-tRNA editing protein, YbaK/EbsC PF555_08655 IPR036754 YbaK/aminoacyl-tRNA synthetase-associated domain superfamily PF555_08655 IPR007214 YbaK/aminoacyl-tRNA synthetase-associated domain PF555_08665 IPR004147 UbiB domain PF555_08665 IPR011009 Protein kinase-like domain superfamily PF555_08670 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal PF555_08670 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal PF555_08670 IPR036250 Acyl-CoA dehydrogenase-like, C-terminal PF555_08670 IPR006091 Acyl-CoA oxidase/dehydrogenase, central domain PF555_08670 IPR006089 Acyl-CoA dehydrogenase, conserved site PF555_08670 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily PF555_08670 IPR037069 Acyl-CoA dehydrogenase/oxidase, N-terminal domain superfamily PF555_08675 IPR006091 Acyl-CoA oxidase/dehydrogenase, central domain PF555_08675 IPR036250 Acyl-CoA dehydrogenase-like, C-terminal PF555_08675 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal PF555_08675 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal PF555_08675 IPR006089 Acyl-CoA dehydrogenase, conserved site PF555_08675 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily PF555_08675 IPR037069 Acyl-CoA dehydrogenase/oxidase, N-terminal domain superfamily PF555_08680 IPR033885 Alkane/xylene monooxygenase PF555_08680 IPR005804 Fatty acid desaturase domain PF555_08685 IPR032783 AraC-type transcription regulator, ligand-binding domain PF555_08685 IPR009057 Homeobox-like domain superfamily PF555_08685 IPR018060 DNA binding HTH domain, AraC-type PF555_08685 IPR018062 HTH domain AraC-type, conserved site PF555_08685 IPR014710 RmlC-like jelly roll fold PF555_08685 IPR011051 RmlC-like cupin domain superfamily PF555_08685 IPR020449 Transcription regulator HTH, AraC- type PF555_08690 IPR027304 Trigger factor/SurA domain superfamily PF555_08690 IPR015391 SurA N-terminal PF555_08690 IPR000297 Peptidyl-prolyl cis-trans isomerase, PpiC-type PF555_08690 IPR023058 Peptidyl-prolyl cis-trans isomerase, PpiC-type, conserved site PF555_08690 IPR023034 Peptidyl-prolyl isomerase SurA PF555_08695 IPR000119 Histone-like DNA-binding protein PF555_08695 IPR020816 Histone-like DNA-binding protein, conserved site PF555_08695 IPR010992 Integration host factor (IHF)-like DNA-binding domain superfamily PF555_08710 IPR036390 Winged helix DNA-binding domain superfamily PF555_08710 IPR036388 Winged helix-like DNA-binding domain superfamily PF555_08710 IPR000944 Transcription regulator Rrf2-type PF555_08710 IPR030489 Transcription regulator Rrf2-type, conserved site PF555_08710 IPR010242 Transcription factor HTH, IscR PF555_08715 IPR000192 Aminotransferase class V domain PF555_08715 IPR020578 Aminotransferase class-V, pyridoxal-phosphate binding site PF555_08715 IPR010240 Cysteine desulfurase IscS PF555_08715 IPR016454 Cysteine desulfurase PF555_08715 IPR015424 Pyridoxal phosphate-dependent transferase PF555_08715 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 PF555_08715 IPR015421 Pyridoxal phosphate-dependent transferase, major domain PF555_08720 IPR011339 ISC system FeS cluster assembly, IscU scaffold PF555_08720 IPR002871 NIF system FeS cluster assembly, NifU, N-terminal PF555_08725 IPR000361 FeS cluster biogenesis PF555_08725 IPR016092 FeS cluster insertion protein PF555_08725 IPR017870 FeS cluster insertion, C-terminal, conserved site PF555_08725 IPR035903 HesB-like domain superfamily PF555_08725 IPR011302 Iron-binding protein IscA, proteobacteria PF555_08730 IPR036869 Chaperone J-domain superfamily PF555_08730 IPR009073 Co-chaperone HscB, C-terminal oligomerisation domain PF555_08730 IPR001623 DnaJ domain PF555_08730 IPR004640 Co-chaperone Hsc20 PF555_08730 IPR036386 HscB, C-terminal domain superfamily PF555_08735 IPR018181 Heat shock protein 70, conserved site PF555_08735 IPR042039 HscA chaperone, nucleotide-binding domain PF555_08735 IPR029048 Heat shock protein 70kD, C-terminal domain superfamily PF555_08735 IPR029047 Heat shock protein 70kD, peptide-binding domain superfamily PF555_08735 IPR013126 Heat shock protein 70 family PF555_08735 IPR010236 ISC system FeS cluster assembly, HscA chaperone PF555_08740 IPR011536 Ferredoxin 2Fe-2S type, proteobacteria PF555_08740 IPR012675 Beta-grasp domain superfamily PF555_08740 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain PF555_08740 IPR001055 Adrenodoxin PF555_08740 IPR036010 2Fe-2S ferredoxin-like superfamily PF555_08740 IPR018298 Adrenodoxin, iron-sulphur binding site PF555_08745 IPR009057 Homeobox-like domain superfamily PF555_08755 IPR024463 Transposase TnpC, homeodomain PF555_08755 IPR024474 Zinc-finger binding domain of transposase IS66 PF555_08755 IPR004291 Transposase, IS66 PF555_08755 IPR039552 Transposase IS66, C-terminal PF555_08760 IPR029787 Nucleotide cyclase PF555_08760 IPR001054 Adenylyl cyclase class-3/4/guanylyl cyclase PF555_08770 IPR001650 Helicase, C-terminal PF555_08770 IPR004576 Transcription-repair coupling factor PF555_08770 IPR027417 P-loop containing nucleoside triphosphate hydrolase PF555_08770 IPR037235 TRCF-like, C-terminal domain PF555_08770 IPR005118 Transcription-repair-coupling factor, C-terminal domain PF555_08770 IPR041471 UvrB, interaction domain PF555_08770 IPR011545 DEAD/DEAH box helicase domain PF555_08770 IPR036101 CarD-like/TRCF domain superfamily PF555_08770 IPR014001 Helicase superfamily 1/2, ATP-binding domain PF555_08770 IPR003711 CarD-like/TRCF domain PF555_08790 IPR010203 Regulator of ribonuclease activity A PF555_08790 IPR005493 Ribonuclease E inhibitor RraA/RraA-like protein PF555_08790 IPR036704 Ribonuclease E inhibitor RraA/RraA-like superfamily PF555_08795 IPR036291 NAD(P)-binding domain superfamily PF555_08795 IPR016040 NAD(P)-binding domain PF555_08795 IPR000534 Semialdehyde dehydrogenase, NAD-binding PF555_08800 IPR002583 Ribosomal protein S20 PF555_08800 IPR036510 Ribosomal protein S20 superfamily PF555_08810 IPR000760 Inositol monophosphatase-like PF555_08810 IPR020550 Inositol monophosphatase, conserved site PF555_08810 IPR006240 3'(2'),5'-bisphosphate nucleotidase CysQ PF555_08810 IPR020583 Inositol monophosphatase, metal-binding site PF555_08825 IPR003593 AAA+ ATPase domain PF555_08825 IPR003439 ABC transporter-like PF555_08825 IPR017871 ABC transporter, conserved site PF555_08825 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal PF555_08825 IPR027417 P-loop containing nucleoside triphosphate hydrolase PF555_08830 IPR000515 ABC transporter type 1, transmembrane domain MetI-like PF555_08830 IPR035906 MetI-like superfamily PF555_08835 IPR035906 MetI-like superfamily PF555_08835 IPR000515 ABC transporter type 1, transmembrane domain MetI-like PF555_08840 IPR024077 Neurolysin/Thimet oligopeptidase, domain 2 PF555_08840 IPR001567 Peptidase M3A/M3B catalytic domain PF555_08870 IPR002898 MotA/TolQ/ExbB proton channel PF555_08875 IPR003400 Biopolymer transport protein ExbD/TolR PF555_08880 IPR003400 Biopolymer transport protein ExbD/TolR PF555_08890 IPR023310 Malate synthase G, beta sub-domain PF555_08890 IPR006253 Malate synthase G PF555_08890 IPR001465 Malate synthase PF555_08890 IPR011076 Malate synthase-like superfamily PF555_08895 IPR030870 Cell division protein ZapE PF555_08895 IPR027417 P-loop containing nucleoside triphosphate hydrolase PF555_08895 IPR005654 ATPase, AFG1-like PF555_08905 IPR020946 Flavin monooxygenase-like PF555_08905 IPR036188 FAD/NAD(P)-binding domain superfamily PF555_08915 IPR013785 Aldolase-type TIM barrel PF555_08915 IPR014732 Orotidine 5'-phosphate decarboxylase PF555_08915 IPR018089 Orotidine 5'-phosphate decarboxylase, active site PF555_08915 IPR001754 Orotidine 5'-phosphate decarboxylase domain PF555_08915 IPR011060 Ribulose-phosphate binding barrel PF555_08925 IPR000119 Histone-like DNA-binding protein PF555_08925 IPR010992 Integration host factor (IHF)-like DNA-binding domain superfamily PF555_08925 IPR020816 Histone-like DNA-binding protein, conserved site PF555_08925 IPR005685 Integration host factor, beta subunit PF555_08930 IPR012340 Nucleic acid-binding, OB-fold PF555_08930 IPR000110 Ribosomal protein S1 PF555_08930 IPR022967 RNA-binding domain, S1 PF555_08930 IPR003029 S1 domain PF555_08935 IPR027417 P-loop containing nucleoside triphosphate hydrolase PF555_08935 IPR011994 Cytidylate kinase domain PF555_08935 IPR003136 Cytidylate kinase PF555_08945 IPR028883 tRNA-specific adenosine deaminase PF555_08945 IPR016192 APOBEC/CMP deaminase, zinc-binding PF555_08945 IPR016193 Cytidine deaminase-like PF555_08945 IPR002125 Cytidine and deoxycytidylate deaminase domain PF555_08955 IPR002043 Uracil-DNA glycosylase family 1 PF555_08955 IPR036895 Uracil-DNA glycosylase-like domain superfamily PF555_08955 IPR005122 Uracil-DNA glycosylase-like PF555_08955 IPR018085 Uracil-DNA glycosylase, active site PF555_08965 IPR005628 General secretion pathway protein K PF555_08965 IPR038072 GspK, central domain superfamily PF555_08970 IPR012902 Prokaryotic N-terminal methylation site PF555_08970 IPR010055 Type II secretion system protein J PF555_08975 IPR010052 Type II secretion system protein I PF555_08975 IPR012902 Prokaryotic N-terminal methylation site PF555_08975 IPR003413 Type II secretion system protein I domain PF555_08990 IPR001130 TatD family PF555_08990 IPR015991 Uncharacterised hydrolase TatD-type PF555_08990 IPR032466 Metal-dependent hydrolase PF555_08990 IPR018228 Deoxyribonuclease, TatD-related, conserved site PF555_09000 IPR004622 DNA polymerase III, delta prime subunit PF555_09000 IPR015199 DNA polymerase III, delta subunit, C-terminal PF555_09000 IPR027417 P-loop containing nucleoside triphosphate hydrolase PF555_09005 IPR003329 Acylneuraminate cytidylyltransferase PF555_09005 IPR004528 3-deoxy-D-manno-octulosonate cytidylyltransferase PF555_09005 IPR029044 Nucleotide-diphospho-sugar transferases PF555_09010 IPR027417 P-loop containing nucleoside triphosphate hydrolase PF555_09010 IPR003758 Tetraacyldisaccharide 4'-kinase PF555_09015 IPR039421 Type I protein exporter PF555_09015 IPR027417 P-loop containing nucleoside triphosphate hydrolase PF555_09015 IPR003439 ABC transporter-like PF555_09015 IPR011917 ABC transporter, lipid A export, MsbA PF555_09015 IPR017871 ABC transporter, conserved site PF555_09015 IPR036640 ABC transporter type 1, transmembrane domain superfamily PF555_09015 IPR011527 ABC transporter type 1, transmembrane domain PF555_09015 IPR003593 AAA+ ATPase domain PF555_09025 IPR002898 MotA/TolQ/ExbB proton channel PF555_09030 IPR041468 ParB/Spo0J, HTH domain PF555_09030 IPR036086 ParB/Sulfiredoxin superfamily PF555_09030 IPR003115 ParB/Sulfiredoxin PF555_09030 IPR004437 ParB/RepB/Spo0J partition protein PF555_09035 IPR027417 P-loop containing nucleoside triphosphate hydrolase PF555_09035 IPR025669 AAA domain PF555_09040 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase PF555_09040 IPR003682 rRNA small subunit methyltransferase G PF555_09045 IPR029044 Nucleotide-diphospho-sugar transferases PF555_09045 IPR005835 Nucleotidyl transferase domain PF555_09050 IPR002575 Aminoglycoside phosphotransferase PF555_09050 IPR011009 Protein kinase-like domain superfamily PF555_09055 IPR020889 LPS-assembly protein LptD PF555_09055 IPR007543 LptD, C-terminal PF555_09055 IPR005653 Organic solvent tolerance-like, N-terminal PF555_09060 IPR027304 Trigger factor/SurA domain superfamily PF555_09060 IPR015391 SurA N-terminal PF555_09060 IPR023034 Peptidyl-prolyl isomerase SurA PF555_09060 IPR000297 Peptidyl-prolyl cis-trans isomerase, PpiC-type PF555_09065 IPR006412 Fructose-bisphosphate aldolase, class II, Calvin cycle subtype PF555_09065 IPR013785 Aldolase-type TIM barrel PF555_09065 IPR000771 Fructose-bisphosphate aldolase, class-II PF555_09075 IPR001576 Phosphoglycerate kinase PF555_09075 IPR015911 Phosphoglycerate kinase, conserved site PF555_09075 IPR015824 Phosphoglycerate kinase, N-terminal PF555_09075 IPR036043 Phosphoglycerate kinase superfamily PF555_09085 IPR029001 Inosine triphosphate pyrophosphatase-like PF555_09085 IPR003697 Nucleoside triphosphate pyrophosphatase Maf-like protein PF555_09090 IPR039994 JmjC domain-containing PF555_09090 IPR003347 JmjC domain PF555_09100 IPR001845 HTH ArsR-type DNA-binding domain PF555_09100 IPR036388 Winged helix-like DNA-binding domain superfamily PF555_09100 IPR036390 Winged helix DNA-binding domain superfamily PF555_09100 IPR011991 ArsR-like helix-turn-helix domain PF555_09105 IPR001991 Sodium:dicarboxylate symporter PF555_09105 IPR036458 Sodium:dicarboxylate symporter superfamily PF555_09105 IPR023025 Serine/threonine transporter SstT PF555_09110 IPR010699 Protein of unknown function DUF1275 PF555_09115 IPR018636 Protein of unknown function DUF2058 PF555_09120 IPR027417 P-loop containing nucleoside triphosphate hydrolase PF555_09120 IPR039421 Type I protein exporter PF555_09120 IPR011527 ABC transporter type 1, transmembrane domain PF555_09120 IPR036640 ABC transporter type 1, transmembrane domain superfamily PF555_09120 IPR003593 AAA+ ATPase domain PF555_09120 IPR017871 ABC transporter, conserved site PF555_09120 IPR003439 ABC transporter-like PF555_09130 IPR020449 Transcription regulator HTH, AraC- type PF555_09130 IPR018060 DNA binding HTH domain, AraC-type PF555_09130 IPR009057 Homeobox-like domain superfamily PF555_09130 IPR032687 HTH-type transcriptional regulator AraC-type, N-terminal PF555_09135 IPR033753 Glycine cleavage system H-protein/Simiate PF555_09135 IPR002930 Glycine cleavage system H-protein PF555_09135 IPR000089 Biotin/lipoyl attachment PF555_09135 IPR003016 2-oxo acid dehydrogenase, lipoyl-binding site PF555_09135 IPR017453 Glycine cleavage system H-protein, subgroup PF555_09135 IPR011053 Single hybrid motif PF555_09140 IPR026590 Sirtuin family, catalytic core domain PF555_09140 IPR029035 DHS-like NAD/FAD-binding domain superfamily PF555_09140 IPR026591 Sirtuin, catalytic core small domain superfamily PF555_09140 IPR003000 Sirtuin family PF555_09140 IPR027546 Sirtuin, class III PF555_09145 IPR038377 Sodium/glucose symporter superfamily PF555_09145 IPR011851 Sodium/proline symporter PF555_09145 IPR001734 Sodium/solute symporter PF555_09145 IPR018212 Sodium/solute symporter, conserved site PF555_09150 IPR011991 ArsR-like helix-turn-helix domain PF555_09150 IPR000485 AsnC-type HTH domain PF555_09150 IPR011008 Dimeric alpha-beta barrel PF555_09150 IPR019887 Transcription regulator AsnC/Lrp, ligand binding domain PF555_09150 IPR019885 Transcription regulator HTH, AsnC-type, conserved site PF555_09150 IPR036390 Winged helix DNA-binding domain superfamily PF555_09150 IPR019888 Transcription regulator AsnC-type PF555_09150 IPR036388 Winged helix-like DNA-binding domain superfamily PF555_09155 IPR010985 Ribbon-helix-helix PF555_09155 IPR002872 Proline dehydrogenase domain PF555_09155 IPR024082 Proline dehydrogenase PutA, domain II PF555_09155 IPR024089 Proline dehydrogenase PutA, domain I/II PF555_09155 IPR041349 Proline utilization A proline dehydrogenase N-terminal domain PF555_09155 IPR016161 Aldehyde/histidinol dehydrogenase PF555_09155 IPR016163 Aldehyde dehydrogenase, C-terminal PF555_09155 IPR016160 Aldehyde dehydrogenase, cysteine active site PF555_09155 IPR029510 Aldehyde dehydrogenase, glutamic acid active site PF555_09155 IPR016162 Aldehyde dehydrogenase, N-terminal PF555_09155 IPR015590 Aldehyde dehydrogenase domain PF555_09155 IPR013321 Arc-type ribbon-helix-helix PF555_09155 IPR024090 Proline dehydrogenase PutA, domain I PF555_09155 IPR025703 Bifunctional protein PutA PF555_09155 IPR005933 Delta-1-pyrroline-5-carboxylate dehydrogenase 3 PF555_09155 IPR029041 FAD-linked oxidoreductase-like PF555_09160 IPR007344 GrpB/Dephospho-CoA kinase PF555_09165 IPR010280 (Uracil-5)-methyltransferase family PF555_09165 IPR011869 tRNA/tmRNA (uracil-C(5))-methyltransferase, TrmA PF555_09165 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase PF555_09165 IPR030391 RNA methyltransferase TrmA, conserved site PF555_09165 IPR030390 RNA methyltransferase TrmA, active site PF555_09175 IPR018711 Phosphodiester glycosidase PF555_09185 IPR007372 Lipid/polyisoprenoid-binding, YceI-like PF555_09185 IPR036761 Lipid/polyisoprenoid-binding, YceI-like superfamily PF555_09185 IPR023480 Uncharacterised protein family UPF0312/YceI PF555_09195 IPR033248 Transketolase, C-terminal domain PF555_09195 IPR020826 Transketolase binding site PF555_09195 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II PF555_09195 IPR029061 Thiamin diphosphate-binding fold PF555_09195 IPR005478 Transketolase, bacterial-like PF555_09195 IPR005475 Transketolase-like, pyrimidine-binding domain PF555_09195 IPR033247 Transketolase family PF555_09195 IPR005474 Transketolase, N-terminal PF555_09200 IPR022630 S-adenosylmethionine synthetase, C-terminal PF555_09200 IPR022636 S-adenosylmethionine synthetase superfamily PF555_09200 IPR022631 S-adenosylmethionine synthetase, conserved site PF555_09200 IPR022629 S-adenosylmethionine synthetase, central domain PF555_09200 IPR022628 S-adenosylmethionine synthetase, N-terminal PF555_09200 IPR002133 S-adenosylmethionine synthetase PF555_09225 IPR024463 Transposase TnpC, homeodomain PF555_09225 IPR039552 Transposase IS66, C-terminal PF555_09225 IPR004291 Transposase, IS66 PF555_09225 IPR024474 Zinc-finger binding domain of transposase IS66 PF555_09235 IPR009057 Homeobox-like domain superfamily PF555_09245 IPR012338 Beta-lactamase/transpeptidase-like PF555_09245 IPR001460 Penicillin-binding protein, transpeptidase PF555_09250 IPR016181 Acyl-CoA N-acyltransferase PF555_09250 IPR000182 GNAT domain PF555_09260 IPR012337 Ribonuclease H-like superfamily PF555_09260 IPR036397 Ribonuclease H superfamily PF555_09260 IPR020563 Crossover junction endodeoxyribonuclease RuvC, magnesium-binding site PF555_09260 IPR002176 Crossover junction endodeoxyribonuclease RuvC PF555_09265 IPR000631 ATP-dependent (S)-NAD(P)H-hydrate dehydratase PF555_09265 IPR030677 Bifunctional NAD(P)H-hydrate repair enzyme Nnr PF555_09265 IPR029056 Ribokinase-like PF555_09265 IPR004443 YjeF N-terminal domain PF555_09265 IPR036652 YjeF N-terminal domain superfamily PF555_09270 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain PF555_09270 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site PF555_09270 IPR013542 Domain of unknown function DUF1730 PF555_09270 IPR009051 Alpha-helical ferredoxin PF555_09270 IPR004453 Epoxyqueuosine reductase QueG PF555_09275 IPR002684 Biotin synthase/Biotin biosynthesis bifunctional protein BioAB PF555_09275 IPR024177 Biotin synthase PF555_09275 IPR006638 Elp3/MiaB/NifB PF555_09275 IPR007197 Radical SAM PF555_09275 IPR013785 Aldolase-type TIM barrel PF555_09275 IPR010722 Biotin and thiamin synthesis-associated domain PF555_09290 IPR036937 Fimbrial-type adhesion domain superfamily PF555_09290 IPR008966 Adhesion domain superfamily PF555_09290 IPR039458 FimA-like PF555_09295 IPR016147 Pili assembly chaperone, N-terminal PF555_09295 IPR001829 Pili assembly chaperone, bacterial PF555_09295 IPR016148 Pili assembly chaperone, C-terminal PF555_09295 IPR036316 Pili assembly chaperone, C-terminal domain superfamily PF555_09295 IPR008962 PapD-like superfamily PF555_09295 IPR013783 Immunoglobulin-like fold PF555_09295 IPR018046 Pili assembly chaperone, conserved site PF555_09300 IPR000015 Outer membrane usher protein PF555_09300 IPR018030 Fimbrial membrane usher, conserved site PF555_09300 IPR025885 PapC, N-terminal domain PF555_09300 IPR025949 PapC-like, C-terminal domain PF555_09300 IPR037224 PapC, N-terminal domain superfamily PF555_09300 IPR042186 Outer membrane usher protein FimD, plug domain PF555_09325 IPR009057 Homeobox-like domain superfamily PF555_09335 IPR039552 Transposase IS66, C-terminal PF555_09335 IPR004291 Transposase, IS66 PF555_09335 IPR024463 Transposase TnpC, homeodomain PF555_09335 IPR024474 Zinc-finger binding domain of transposase IS66 PF555_09350 IPR001248 Purine-cytosine permease PF555_09350 IPR026030 Purine-cytosine permease Fcy2/21/22 PF555_09350 IPR038271 Purine-cytosine permease superfamily PF555_09360 IPR036390 Winged helix DNA-binding domain superfamily PF555_09360 IPR036388 Winged helix-like DNA-binding domain superfamily PF555_09360 IPR000847 Transcription regulator HTH, LysR PF555_09360 IPR005119 LysR, substrate-binding PF555_09380 IPR023772 DNA-binding HTH domain, TetR-type, conserved site PF555_09380 IPR009057 Homeobox-like domain superfamily PF555_09380 IPR001647 DNA-binding HTH domain, TetR-type PF555_09390 IPR002876 Transcriptional regulator TACO1-like PF555_09390 IPR017856 Integrase-like, N-terminal PF555_09390 IPR029072 YebC-like PF555_09390 IPR026564 Transcriptional regulator TACO1-like, domain 3 PF555_09395 IPR036390 Winged helix DNA-binding domain superfamily PF555_09395 IPR019887 Transcription regulator AsnC/Lrp, ligand binding domain PF555_09395 IPR036388 Winged helix-like DNA-binding domain superfamily PF555_09395 IPR019888 Transcription regulator AsnC-type PF555_09395 IPR019885 Transcription regulator HTH, AsnC-type, conserved site PF555_09395 IPR011991 ArsR-like helix-turn-helix domain PF555_09395 IPR000485 AsnC-type HTH domain PF555_09395 IPR011008 Dimeric alpha-beta barrel PF555_09405 IPR003593 AAA+ ATPase domain PF555_09405 IPR030679 ABC-type amino acid transport system, ATPase component, HisP-type PF555_09405 IPR003439 ABC transporter-like PF555_09405 IPR017871 ABC transporter, conserved site PF555_09405 IPR027417 P-loop containing nucleoside triphosphate hydrolase PF555_09410 IPR010065 Amino acid ABC transporter, permease protein, 3-TM domain PF555_09410 IPR030205 Glutamate/aspartate transport system permease protein GltK/AatM PF555_09410 IPR000515 ABC transporter type 1, transmembrane domain MetI-like PF555_09410 IPR035906 MetI-like superfamily PF555_09415 IPR010065 Amino acid ABC transporter, permease protein, 3-TM domain PF555_09415 IPR030202 Glutamate/aspartate transport system permease protein GltJ/AatQ PF555_09415 IPR000515 ABC transporter type 1, transmembrane domain MetI-like PF555_09415 IPR035906 MetI-like superfamily PF555_09430 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily PF555_09430 IPR037069 Acyl-CoA dehydrogenase/oxidase, N-terminal domain superfamily PF555_09430 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal PF555_09430 IPR036250 Acyl-CoA dehydrogenase-like, C-terminal PF555_09430 IPR013107 Acyl-CoA dehydrogenase, C-terminal domain PF555_09440 IPR016215 Nitrilotriacetate monooxygenase component A/pristinamycin IIA synthase subunit A PF555_09440 IPR036661 Luciferase-like domain superfamily PF555_09440 IPR011251 Luciferase-like domain PF555_09445 IPR004872 Lipoprotein NlpA family PF555_09450 IPR004872 Lipoprotein NlpA family PF555_09455 IPR017871 ABC transporter, conserved site PF555_09455 IPR018449 NIL domain PF555_09455 IPR027417 P-loop containing nucleoside triphosphate hydrolase PF555_09455 IPR041701 Methionine import ATP-binding protein MetN, ATP-binding cassette domain PF555_09455 IPR017908 ABC transporter, methionine import, ATP-binding protein, MetN, C-terminal PF555_09455 IPR003439 ABC transporter-like PF555_09455 IPR026253 Methionine import ATP-binding protein MetN PF555_09455 IPR003593 AAA+ ATPase domain PF555_09460 IPR000515 ABC transporter type 1, transmembrane domain MetI-like PF555_09460 IPR035906 MetI-like superfamily PF555_09465 IPR027417 P-loop containing nucleoside triphosphate hydrolase PF555_09465 IPR004396 Ribosome-binding ATPase YchF/Obg-like ATPase 1 PF555_09465 IPR012675 Beta-grasp domain superfamily PF555_09465 IPR031167 OBG-type guanine nucleotide-binding (G) domain PF555_09465 IPR006073 GTP binding domain PF555_09465 IPR004095 TGS PF555_09465 IPR023192 TGS-like domain superfamily PF555_09465 IPR041706 YchF, N-terminal PF555_09465 IPR013029 YchF, C-terminal domain PF555_09465 IPR012676 TGS-like PF555_09490 IPR011606 Branched-chain amino acid transport, permease PF555_09495 IPR008407 Branched-chain amino acid transport, AzlD PF555_09505 IPR005862 Formate-dependent phosphoribosylglycinamide formyltransferase PF555_09505 IPR016185 Pre-ATP-grasp domain superfamily PF555_09505 IPR013815 ATP-grasp fold, subdomain 1 PF555_09505 IPR003135 ATP-grasp fold, ATP-dependent carboxylate-amine ligase-type PF555_09505 IPR011761 ATP-grasp fold PF555_09505 IPR011054 Rudiment single hybrid motif PF555_09510 IPR006674 HD domain PF555_09510 IPR013546 PII-uridylyltransferase/Glutamine-synthetase adenylyltransferase PF555_09510 IPR002934 Polymerase, nucleotidyl transferase domain PF555_09510 IPR010043 Bifunctional uridylyltransferase/uridylyl-removing enzyme PF555_09510 IPR002912 ACT domain PF555_09510 IPR003607 HD/PDEase domain PF555_09515 IPR004839 Aminotransferase, class I/classII PF555_09515 IPR019880 4-dedimethylamino-4-oxo-anhydrotetracycline transaminase OxyQ PF555_09515 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 PF555_09515 IPR015424 Pyridoxal phosphate-dependent transferase PF555_09515 IPR015421 Pyridoxal phosphate-dependent transferase, major domain PF555_09525 IPR024463 Transposase TnpC, homeodomain PF555_09525 IPR024474 Zinc-finger binding domain of transposase IS66 PF555_09525 IPR039552 Transposase IS66, C-terminal PF555_09525 IPR004291 Transposase, IS66 PF555_09535 IPR009057 Homeobox-like domain superfamily PF555_09545 IPR018060 DNA binding HTH domain, AraC-type PF555_09545 IPR032783 AraC-type transcription regulator, ligand-binding domain PF555_09545 IPR009057 Homeobox-like domain superfamily PF555_09545 IPR020449 Transcription regulator HTH, AraC- type PF555_09545 IPR011051 RmlC-like cupin domain superfamily PF555_09545 IPR014710 RmlC-like jelly roll fold PF555_09550 IPR029760 Glutathione peroxidase conserved site PF555_09550 IPR036249 Thioredoxin-like superfamily PF555_09550 IPR029759 Glutathione peroxidase active site PF555_09550 IPR000889 Glutathione peroxidase PF555_09555 IPR011057 Mss4-like superfamily PF555_09555 IPR002579 Peptide methionine sulphoxide reductase MrsB PF555_09555 IPR028427 Peptide methionine sulfoxide reductase PF555_09560 IPR015421 Pyridoxal phosphate-dependent transferase, major domain PF555_09560 IPR015424 Pyridoxal phosphate-dependent transferase PF555_09560 IPR004839 Aminotransferase, class I/classII PF555_09560 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 PF555_09565 IPR018107 Sodium:dicarboxylate symporter, conserved site PF555_09565 IPR001991 Sodium:dicarboxylate symporter PF555_09565 IPR023954 C4-dicarboxylate transport protein PF555_09565 IPR036458 Sodium:dicarboxylate symporter superfamily PF555_09570 IPR025668 Transposase DDE domain PF555_09575 IPR020827 Asparaginase/glutaminase, active site 1 PF555_09575 IPR027473 L-asparaginase, C-terminal PF555_09575 IPR027475 Asparaginase/glutaminase, active site 2 PF555_09575 IPR006034 Asparaginase/glutaminase-like PF555_09575 IPR036152 Asparaginase/glutaminase-like superfamily PF555_09575 IPR027474 L-asparaginase, N-terminal PF555_09575 IPR037152 L-asparaginase, N-terminal domain superfamily PF555_09575 IPR004550 L-asparaginase, type II PF555_09575 IPR040919 Asparaginase/glutaminase, C-terminal PF555_09580 IPR004013 PHP domain PF555_09580 IPR011708 Bacterial DNA polymerase III, alpha subunit, NTPase domain PF555_09580 IPR041931 Bacterial DNA polymerase III alpha subunit, thumb domain PF555_09580 IPR040982 DNA polymerase III alpha subunit finger domain PF555_09580 IPR029460 DNA polymerase, helix-hairpin-helix motif PF555_09580 IPR004365 OB-fold nucleic acid binding domain, AA-tRNA synthetase-type PF555_09580 IPR003141 Polymerase/histidinol phosphatase, N-terminal PF555_09580 IPR004805 DNA polymerase III, alpha subunit PF555_09580 IPR016195 Polymerase/histidinol phosphatase-like PF555_09585 IPR029026 tRNA (guanine-N1-)-methyltransferase, N-terminal PF555_09585 IPR001537 tRNA/rRNA methyltransferase, SpoU type PF555_09585 IPR004384 RNA methyltransferase TrmJ/LasT PF555_09585 IPR029028 Alpha/beta knot methyltransferases PF555_09590 IPR018357 Hexapeptide transferase, conserved site PF555_09590 IPR001451 Hexapeptide repeat PF555_09590 IPR011004 Trimeric LpxA-like superfamily PF555_09590 IPR005881 Serine O-acetyltransferase PF555_09590 IPR042122 Serine acetyltransferase, N-terminal domain superfamily PF555_09605 IPR012081 Alkyl hydroperoxide reductase subunit F PF555_09605 IPR023753 FAD/NAD(P)-binding domain PF555_09605 IPR036249 Thioredoxin-like superfamily PF555_09605 IPR012336 Thioredoxin-like fold PF555_09605 IPR008255 Pyridine nucleotide-disulphide oxidoreductase, class-II, active site PF555_09605 IPR036188 FAD/NAD(P)-binding domain superfamily PF555_09605 IPR002109 Glutaredoxin PF555_09620 IPR036390 Winged helix DNA-binding domain superfamily PF555_09620 IPR036388 Winged helix-like DNA-binding domain superfamily PF555_09620 IPR000847 Transcription regulator HTH, LysR PF555_09620 IPR005119 LysR, substrate-binding PF555_09625 IPR004706 Arsenical-resistance protein Acr3 PF555_09625 IPR038770 Sodium/solute symporter superfamily PF555_09625 IPR002657 Bile acid:sodium symporter/arsenical resistance protein Acr3 PF555_09630 IPR036390 Winged helix DNA-binding domain superfamily PF555_09630 IPR001845 HTH ArsR-type DNA-binding domain PF555_09630 IPR011991 ArsR-like helix-turn-helix domain PF555_09630 IPR036388 Winged helix-like DNA-binding domain superfamily PF555_09635 IPR006660 Arsenate reductase-like PF555_09635 IPR006659 Arsenate reductase PF555_09635 IPR036249 Thioredoxin-like superfamily PF555_09645 IPR026912 Adenine deaminase C-terminal domain PF555_09645 IPR032466 Metal-dependent hydrolase PF555_09645 IPR011059 Metal-dependent hydrolase, composite domain superfamily PF555_09645 IPR006680 Amidohydrolase-related PF555_09645 IPR006679 Adenine deaminase PF555_09655 IPR000847 Transcription regulator HTH, LysR PF555_09655 IPR005119 LysR, substrate-binding PF555_09655 IPR036390 Winged helix DNA-binding domain superfamily PF555_09655 IPR036388 Winged helix-like DNA-binding domain superfamily PF555_09665 IPR012681 Nucleobase cation symporter-1, NCS1 PF555_09665 IPR038271 Purine-cytosine permease superfamily PF555_09665 IPR001248 Purine-cytosine permease PF555_09670 IPR015942 Asp/Glu/hydantoin racemase PF555_09675 IPR003819 TauD/TfdA-like domain PF555_09675 IPR042098 Taurine dioxygenase TauD-like superfamily PF555_09675 IPR006189 CHASE domain PF555_09680 IPR035906 MetI-like superfamily PF555_09680 IPR000515 ABC transporter type 1, transmembrane domain MetI-like PF555_09685 IPR015859 ABC transporter, taurine import, TauD PF555_09685 IPR017871 ABC transporter, conserved site PF555_09685 IPR027417 P-loop containing nucleoside triphosphate hydrolase PF555_09685 IPR003439 ABC transporter-like PF555_09685 IPR003593 AAA+ ATPase domain PF555_09690 IPR007210 ABC-type glycine betaine transport system, substrate-binding domain PF555_09690 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF PF555_09690 IPR010068 Taurine ABC transporter, substrate-binding protein TauA PF555_09715 IPR020846 Major facilitator superfamily domain PF555_09715 IPR005828 Major facilitator, sugar transporter-like PF555_09715 IPR036259 MFS transporter superfamily PF555_09715 IPR005829 Sugar transporter, conserved site PF555_09720 IPR011251 Luciferase-like domain PF555_09720 IPR036661 Luciferase-like domain superfamily PF555_09720 IPR016215 Nitrilotriacetate monooxygenase component A/pristinamycin IIA synthase subunit A PF555_09735 IPR002585 Cytochrome ubiquinol oxidase subunit 1 PF555_09740 IPR003317 Cytochrome ubiquinol oxidase subunit 2 PF555_09750 IPR004839 Aminotransferase, class I/classII PF555_09750 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 PF555_09750 IPR036388 Winged helix-like DNA-binding domain superfamily PF555_09750 IPR000524 Transcription regulator HTH, GntR PF555_09750 IPR036390 Winged helix DNA-binding domain superfamily PF555_09750 IPR015424 Pyridoxal phosphate-dependent transferase PF555_09750 IPR015421 Pyridoxal phosphate-dependent transferase, major domain PF555_09755 IPR036388 Winged helix-like DNA-binding domain superfamily PF555_09755 IPR000847 Transcription regulator HTH, LysR PF555_09755 IPR037400 Malonate utilization transcriptional regulator, PBP2 domain PF555_09755 IPR005119 LysR, substrate-binding PF555_09755 IPR036390 Winged helix DNA-binding domain superfamily PF555_09770 IPR001227 Acyl transferase domain superfamily PF555_09770 IPR014043 Acyl transferase PF555_09770 IPR016035 Acyl transferase/acyl hydrolase/lysophospholipase PF555_09770 IPR004410 Malonyl CoA-acyl carrier protein transacylase, FabD-type PF555_09770 IPR016036 Malonyl-CoA ACP transacylase, ACP-binding PF555_09770 IPR024925 Malonyl CoA-acyl carrier protein transacylase PF555_09775 IPR017557 Phosphoribosyl-dephospho-CoA transferase PF555_09780 IPR029045 ClpP/crotonase-like domain superfamily PF555_09780 IPR011763 Acetyl-coenzyme A carboxyltransferase, C-terminal PF555_09780 IPR009648 Biotin-dependent malonate decarboxylase, gamma subunit PF555_09785 IPR011762 Acetyl-coenzyme A carboxyltransferase, N-terminal PF555_09785 IPR034733 Acetyl-CoA carboxylase PF555_09785 IPR029045 ClpP/crotonase-like domain superfamily PF555_09785 IPR017556 Biotin-independent malonate decarboxylase, beta subunit PF555_09790 IPR023439 Malonate decarboxylase/citrate lyase acyl carrier protein PF555_09790 IPR009662 Malonate decarboxylase delta subunit PF555_09795 IPR017555 Triphosphoribosyl-dephospho-CoA synthase PF555_09795 IPR002736 Triphosphoribosyl-dephospho-CoA protein PF555_09800 IPR037171 NagB/RpiA transferase-like PF555_09800 IPR005777 Acetyl-S-ACP:malonate ACP transferase PF555_09805 IPR005119 LysR, substrate-binding PF555_09805 IPR036388 Winged helix-like DNA-binding domain superfamily PF555_09805 IPR000847 Transcription regulator HTH, LysR PF555_09805 IPR036390 Winged helix DNA-binding domain superfamily PF555_09815 IPR011701 Major facilitator superfamily PF555_09815 IPR020846 Major facilitator superfamily domain PF555_09815 IPR036259 MFS transporter superfamily PF555_09830 IPR004839 Aminotransferase, class I/classII PF555_09830 IPR015421 Pyridoxal phosphate-dependent transferase, major domain PF555_09830 IPR036390 Winged helix DNA-binding domain superfamily PF555_09830 IPR036388 Winged helix-like DNA-binding domain superfamily PF555_09830 IPR000524 Transcription regulator HTH, GntR PF555_09830 IPR015424 Pyridoxal phosphate-dependent transferase PF555_09835 IPR005261 Conserved hypothetical protein CHP00659 PF555_09835 IPR007300 CidB/LrgB family PF555_09840 IPR023760 Holin-like protein CidA PF555_09840 IPR005538 LrgA/CidA family PF555_09845 IPR005119 LysR, substrate-binding PF555_09845 IPR036388 Winged helix-like DNA-binding domain superfamily PF555_09845 IPR036390 Winged helix DNA-binding domain superfamily PF555_09845 IPR000847 Transcription regulator HTH, LysR PF555_09850 IPR036282 Glutathione S-transferase, C-terminal domain superfamily PF555_09850 IPR040079 Glutathione Transferase family PF555_09850 IPR004045 Glutathione S-transferase, N-terminal PF555_09850 IPR034338 Glutathione S-transferases, subfamily 4, C-terminal PF555_09850 IPR036249 Thioredoxin-like superfamily PF555_09850 IPR010987 Glutathione S-transferase, C-terminal-like PF555_09855 IPR010987 Glutathione S-transferase, C-terminal-like PF555_09855 IPR036249 Thioredoxin-like superfamily PF555_09855 IPR004045 Glutathione S-transferase, N-terminal PF555_09855 IPR040079 Glutathione Transferase family PF555_09855 IPR036282 Glutathione S-transferase, C-terminal domain superfamily PF555_09860 IPR005119 LysR, substrate-binding PF555_09860 IPR000847 Transcription regulator HTH, LysR PF555_09860 IPR036388 Winged helix-like DNA-binding domain superfamily PF555_09860 IPR036390 Winged helix DNA-binding domain superfamily PF555_09865 IPR002347 Short-chain dehydrogenase/reductase SDR PF555_09865 IPR020904 Short-chain dehydrogenase/reductase, conserved site PF555_09865 IPR011284 3-oxoacyl-(acyl-carrier-protein) reductase PF555_09865 IPR036291 NAD(P)-binding domain superfamily PF555_09870 IPR023695 Thiosulfate sulfurtransferase, bacterial PF555_09870 IPR036873 Rhodanese-like domain superfamily PF555_09870 IPR001763 Rhodanese-like domain PF555_09875 IPR042122 Serine acetyltransferase, N-terminal domain superfamily PF555_09875 IPR011004 Trimeric LpxA-like superfamily PF555_09875 IPR001451 Hexapeptide repeat PF555_09885 IPR000192 Aminotransferase class V domain PF555_09885 IPR010970 Cysteine desulfurase, SufS PF555_09885 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 PF555_09885 IPR015421 Pyridoxal phosphate-dependent transferase, major domain PF555_09885 IPR015424 Pyridoxal phosphate-dependent transferase PF555_09890 IPR004778 Homoserine/Threonine efflux protein PF555_09890 IPR001123 Amino acid exporter protein, LeuE-type PF555_09895 IPR000847 Transcription regulator HTH, LysR PF555_09895 IPR036388 Winged helix-like DNA-binding domain superfamily PF555_09895 IPR036390 Winged helix DNA-binding domain superfamily PF555_09895 IPR005119 LysR, substrate-binding PF555_09905 IPR001320 Ionotropic glutamate receptor PF555_09905 IPR018313 Solute-binding protein family 3, conserved site PF555_09905 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF PF555_09910 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF PF555_09910 IPR018313 Solute-binding protein family 3, conserved site PF555_09915 IPR017871 ABC transporter, conserved site PF555_09915 IPR003593 AAA+ ATPase domain PF555_09915 IPR030679 ABC-type amino acid transport system, ATPase component, HisP-type PF555_09915 IPR003439 ABC transporter-like PF555_09915 IPR027417 P-loop containing nucleoside triphosphate hydrolase PF555_09920 IPR035906 MetI-like superfamily PF555_09920 IPR010065 Amino acid ABC transporter, permease protein, 3-TM domain PF555_09920 IPR000515 ABC transporter type 1, transmembrane domain MetI-like PF555_09925 IPR035906 MetI-like superfamily PF555_09925 IPR000515 ABC transporter type 1, transmembrane domain MetI-like PF555_09925 IPR010065 Amino acid ABC transporter, permease protein, 3-TM domain PF555_09940 IPR037522 HD-GYP domain PF555_09940 IPR003607 HD/PDEase domain PF555_09940 IPR011006 CheY-like superfamily PF555_09940 IPR001789 Signal transduction response regulator, receiver domain PF555_09945 IPR005467 Histidine kinase domain PF555_09945 IPR036890 Histidine kinase/HSP90-like ATPase superfamily PF555_09945 IPR004358 Signal transduction histidine kinase-related protein, C-terminal PF555_09945 IPR035965 PAS domain superfamily PF555_09945 IPR015387 LuxQ, periplasmic PF555_09945 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily PF555_09945 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain PF555_09945 IPR001789 Signal transduction response regulator, receiver domain PF555_09945 IPR003594 Histidine kinase/HSP90-like ATPase PF555_09945 IPR029151 Periplasmic sensor-like domain superfamily PF555_09945 IPR011006 CheY-like superfamily PF555_09955 IPR011008 Dimeric alpha-beta barrel PF555_09955 IPR036390 Winged helix DNA-binding domain superfamily PF555_09955 IPR036388 Winged helix-like DNA-binding domain superfamily PF555_09955 IPR019885 Transcription regulator HTH, AsnC-type, conserved site PF555_09955 IPR011991 ArsR-like helix-turn-helix domain PF555_09955 IPR000485 AsnC-type HTH domain PF555_09955 IPR019888 Transcription regulator AsnC-type PF555_09955 IPR019887 Transcription regulator AsnC/Lrp, ligand binding domain PF555_09965 IPR015927 Peptidase S24/S26A/S26B/S26C PF555_09965 IPR006197 Peptidase S24, LexA-like PF555_09965 IPR036286 LexA/Signal peptidase-like superfamily PF555_09965 IPR039418 LexA-like PF555_09985 IPR002347 Short-chain dehydrogenase/reductase SDR PF555_09985 IPR020904 Short-chain dehydrogenase/reductase, conserved site PF555_09985 IPR036291 NAD(P)-binding domain superfamily PF555_09990 IPR041399 Large catalase, C-terminal domain PF555_09990 IPR018028 Catalase, mono-functional, haem-containing PF555_09990 IPR020835 Catalase superfamily PF555_09990 IPR029062 Class I glutamine amidotransferase-like PF555_09990 IPR011614 Catalase core domain PF555_09990 IPR024712 Catalase, mono-functional, haem-containing, clade 2 PF555_09990 IPR024708 Catalase active site PF555_09990 IPR010582 Catalase immune-responsive domain PF555_09990 IPR037060 Catalase core domain superfamily PF555_09990 IPR002226 Catalase haem-binding site PF555_10000 IPR036425 MoaB/Mog-like domain superfamily PF555_10000 IPR001453 MoaB/Mog domain PF555_10000 IPR036653 CinA-like, C-terminal PF555_10000 IPR008136 CinA, C-terminal PF555_10000 IPR041424 CinA, KH domain PF555_10000 IPR008135 Competence-induced protein CinA PF555_10035 IPR000847 Transcription regulator HTH, LysR PF555_10035 IPR005119 LysR, substrate-binding PF555_10035 IPR036390 Winged helix DNA-binding domain superfamily PF555_10035 IPR036388 Winged helix-like DNA-binding domain superfamily PF555_10055 IPR000873 AMP-dependent synthetase/ligase PF555_10055 IPR020845 AMP-binding, conserved site PF555_10055 IPR025110 AMP-binding enzyme, C-terminal domain PF555_10060 IPR009057 Homeobox-like domain superfamily PF555_10060 IPR001647 DNA-binding HTH domain, TetR-type PF555_10065 IPR006089 Acyl-CoA dehydrogenase, conserved site PF555_10065 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily PF555_10065 IPR006091 Acyl-CoA oxidase/dehydrogenase, central domain PF555_10065 IPR036250 Acyl-CoA dehydrogenase-like, C-terminal PF555_10065 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal PF555_10065 IPR037069 Acyl-CoA dehydrogenase/oxidase, N-terminal domain superfamily PF555_10065 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal PF555_10070 IPR034733 Acetyl-CoA carboxylase PF555_10070 IPR029045 ClpP/crotonase-like domain superfamily PF555_10070 IPR011763 Acetyl-coenzyme A carboxyltransferase, C-terminal PF555_10070 IPR011762 Acetyl-coenzyme A carboxyltransferase, N-terminal PF555_10075 IPR018376 Enoyl-CoA hydratase/isomerase, conserved site PF555_10075 IPR001753 Enoyl-CoA hydratase/isomerase PF555_10075 IPR014748 Enoyl-CoA hydratase, C-terminal PF555_10075 IPR029045 ClpP/crotonase-like domain superfamily PF555_10080 IPR011053 Single hybrid motif PF555_10080 IPR005482 Biotin carboxylase, C-terminal PF555_10080 IPR011054 Rudiment single hybrid motif PF555_10080 IPR016185 Pre-ATP-grasp domain superfamily PF555_10080 IPR011761 ATP-grasp fold PF555_10080 IPR013815 ATP-grasp fold, subdomain 1 PF555_10080 IPR005481 Biotin carboxylase-like, N-terminal domain PF555_10080 IPR001882 Biotin-binding site PF555_10080 IPR011764 Biotin carboxylation domain PF555_10080 IPR041265 Propionyl-coenzyme A carboxylase, BT domain PF555_10080 IPR000089 Biotin/lipoyl attachment PF555_10080 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain PF555_10085 IPR027167 Hydroxymethylglutaryl-CoA lyase PF555_10085 IPR000891 Pyruvate carboxyltransferase PF555_10085 IPR000138 Hydroxymethylglutaryl-CoA lyase, active site PF555_10085 IPR013785 Aldolase-type TIM barrel PF555_10090 IPR036390 Winged helix DNA-binding domain superfamily PF555_10090 IPR036388 Winged helix-like DNA-binding domain superfamily PF555_10090 IPR005119 LysR, substrate-binding PF555_10090 IPR000847 Transcription regulator HTH, LysR PF555_10105 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal PF555_10105 IPR025878 Acetyl-CoA dehydrogenase-like C-terminal domain PF555_10105 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal PF555_10105 IPR036250 Acyl-CoA dehydrogenase-like, C-terminal PF555_10105 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily PF555_10105 IPR006091 Acyl-CoA oxidase/dehydrogenase, central domain PF555_10105 IPR037069 Acyl-CoA dehydrogenase/oxidase, N-terminal domain superfamily PF555_10115 IPR020846 Major facilitator superfamily domain PF555_10115 IPR036259 MFS transporter superfamily PF555_10115 IPR011701 Major facilitator superfamily PF555_10125 IPR012791 3-oxoacid CoA-transferase, subunit B PF555_10125 IPR004165 Coenzyme A transferase family I PF555_10125 IPR004164 Coenzyme A transferase active site PF555_10125 IPR037171 NagB/RpiA transferase-like PF555_10130 IPR037171 NagB/RpiA transferase-like PF555_10130 IPR004163 Coenzyme A transferase binding site PF555_10130 IPR004165 Coenzyme A transferase family I PF555_10130 IPR012792 3-oxoacid CoA-transferase, subunit A PF555_10135 IPR036259 MFS transporter superfamily PF555_10135 IPR020846 Major facilitator superfamily domain PF555_10135 IPR004746 Major facilitator superfamily, aromatic acid:H+ symporter family PF555_10135 IPR011701 Major facilitator superfamily PF555_10135 IPR005829 Sugar transporter, conserved site PF555_10140 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily PF555_10140 IPR037069 Acyl-CoA dehydrogenase/oxidase, N-terminal domain superfamily PF555_10140 IPR006089 Acyl-CoA dehydrogenase, conserved site PF555_10140 IPR006091 Acyl-CoA oxidase/dehydrogenase, central domain PF555_10140 IPR036250 Acyl-CoA dehydrogenase-like, C-terminal PF555_10140 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal PF555_10140 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal PF555_10145 IPR018376 Enoyl-CoA hydratase/isomerase, conserved site PF555_10145 IPR029045 ClpP/crotonase-like domain superfamily PF555_10145 IPR014748 Enoyl-CoA hydratase, C-terminal PF555_10145 IPR001753 Enoyl-CoA hydratase/isomerase PF555_10150 IPR036291 NAD(P)-binding domain superfamily PF555_10150 IPR011284 3-oxoacyl-(acyl-carrier-protein) reductase PF555_10150 IPR020904 Short-chain dehydrogenase/reductase, conserved site PF555_10150 IPR002347 Short-chain dehydrogenase/reductase SDR PF555_10155 IPR006180 3-hydroxyacyl-CoA dehydrogenase, conserved site PF555_10155 IPR006176 3-hydroxyacyl-CoA dehydrogenase, NAD binding PF555_10155 IPR036291 NAD(P)-binding domain superfamily PF555_10155 IPR011967 3-hydroxyacyl-CoA dehydrogenase PaaC PF555_10155 IPR006108 3-hydroxyacyl-CoA dehydrogenase, C-terminal PF555_10155 IPR041040 3-hydroxybutyryl-CoA dehydrogenase reduced Rossmann-fold domain PF555_10155 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily PF555_10160 IPR002155 Thiolase PF555_10160 IPR020613 Thiolase, conserved site PF555_10160 IPR020616 Thiolase, N-terminal PF555_10160 IPR020617 Thiolase, C-terminal PF555_10160 IPR020610 Thiolase, active site PF555_10160 IPR020615 Thiolase, acyl-enzyme intermediate active site PF555_10160 IPR016039 Thiolase-like PF555_10160 IPR012793 Beta-ketoadipyl CoA thiolase PF555_10165 IPR036390 Winged helix DNA-binding domain superfamily PF555_10165 IPR005471 Transcription regulator IclR, N-terminal PF555_10165 IPR014757 Transcription regulator IclR, C-terminal PF555_10165 IPR029016 GAF-like domain superfamily PF555_10165 IPR036388 Winged helix-like DNA-binding domain superfamily PF555_10170 IPR011701 Major facilitator superfamily PF555_10170 IPR020846 Major facilitator superfamily domain PF555_10170 IPR036259 MFS transporter superfamily PF555_10175 IPR004136 Nitronate monooxygenase PF555_10175 IPR013785 Aldolase-type TIM barrel PF555_10180 IPR001753 Enoyl-CoA hydratase/isomerase PF555_10180 IPR014748 Enoyl-CoA hydratase, C-terminal PF555_10180 IPR011968 Phenylacetate degradation probable enoyl-CoA hydratase PaaB PF555_10180 IPR029045 ClpP/crotonase-like domain superfamily PF555_10185 IPR029016 GAF-like domain superfamily PF555_10185 IPR014757 Transcription regulator IclR, C-terminal PF555_10185 IPR005471 Transcription regulator IclR, N-terminal PF555_10185 IPR036388 Winged helix-like DNA-binding domain superfamily PF555_10185 IPR036390 Winged helix DNA-binding domain superfamily PF555_10190 IPR003673 CoA-transferase family III PF555_10190 IPR023606 CoA-transferase family III domain superfamily PF555_10195 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily PF555_10195 IPR037069 Acyl-CoA dehydrogenase/oxidase, N-terminal domain superfamily PF555_10195 IPR006089 Acyl-CoA dehydrogenase, conserved site PF555_10195 IPR006091 Acyl-CoA oxidase/dehydrogenase, central domain PF555_10195 IPR036250 Acyl-CoA dehydrogenase-like, C-terminal PF555_10195 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal PF555_10195 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal PF555_10200 IPR005829 Sugar transporter, conserved site PF555_10200 IPR004746 Major facilitator superfamily, aromatic acid:H+ symporter family PF555_10200 IPR020846 Major facilitator superfamily domain PF555_10200 IPR011701 Major facilitator superfamily PF555_10200 IPR036259 MFS transporter superfamily PF555_10205 IPR023214 HAD superfamily PF555_10205 IPR041492 Haloacid dehalogenase-like hydrolase PF555_10205 IPR036412 HAD-like superfamily PF555_10205 IPR006439 HAD hydrolase, subfamily IA PF555_10205 IPR006323 Phosphonoacetaldehyde hydrolase PF555_10205 IPR023198 Phosphoglycolate phosphatase-like, domain 2 PF555_10210 IPR024169 Serine-pyruvate aminotransferase/2-aminoethylphosphonate-pyruvate transaminase PF555_10210 IPR015421 Pyridoxal phosphate-dependent transferase, major domain PF555_10210 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 PF555_10210 IPR015424 Pyridoxal phosphate-dependent transferase PF555_10210 IPR012703 2-aminoethylphosphonate--pyruvate transaminase PF555_10210 IPR000192 Aminotransferase class V domain PF555_10215 IPR006076 FAD dependent oxidoreductase PF555_10215 IPR036188 FAD/NAD(P)-binding domain superfamily PF555_10215 IPR006281 Sarcosine oxidase, monomeric PF555_10220 IPR000515 ABC transporter type 1, transmembrane domain MetI-like PF555_10220 IPR035906 MetI-like superfamily PF555_10225 IPR017871 ABC transporter, conserved site PF555_10225 IPR003439 ABC transporter-like PF555_10225 IPR027417 P-loop containing nucleoside triphosphate hydrolase PF555_10225 IPR013611 Transport-associated OB, type 2 PF555_10225 IPR008995 Molybdate/tungstate binding, C-terminal PF555_10225 IPR017666 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT2 PF555_10225 IPR014769 ABC transporter, sulphate/thiosulphate import, ATP-binding protein CysA, C-terminal PF555_10225 IPR003593 AAA+ ATPase domain PF555_10230 IPR026045 Ferric binding protein PF555_10235 IPR028978 Chorismate pyruvate-lyase/UbiC transcription regulator-associated domain superfamily PF555_10235 IPR000524 Transcription regulator HTH, GntR PF555_10235 IPR036390 Winged helix DNA-binding domain superfamily PF555_10235 IPR017722 Phosphonate utilization transcriptional regulator PhnR PF555_10235 IPR011663 UbiC transcription regulator-associated PF555_10235 IPR036388 Winged helix-like DNA-binding domain superfamily PF555_10240 IPR012733 4-hydroxybenzoate 3-monooxygenase PF555_10240 IPR036188 FAD/NAD(P)-binding domain superfamily PF555_10240 IPR002938 FAD-binding domain PF555_10245 IPR014757 Transcription regulator IclR, C-terminal PF555_10245 IPR029016 GAF-like domain superfamily PF555_10245 IPR005471 Transcription regulator IclR, N-terminal PF555_10245 IPR036388 Winged helix-like DNA-binding domain superfamily PF555_10245 IPR036390 Winged helix DNA-binding domain superfamily PF555_10245 IPR012794 Beta-ketoadipate transcriptional regulator, PcaR/PcaU/PobR PF555_10250 IPR003680 Flavodoxin-like fold PF555_10250 IPR023048 NADH-azoreductase, FMN-dependent PF555_10250 IPR029039 Flavoprotein-like superfamily PF555_10255 IPR005119 LysR, substrate-binding PF555_10255 IPR036390 Winged helix DNA-binding domain superfamily PF555_10255 IPR000847 Transcription regulator HTH, LysR PF555_10255 IPR036388 Winged helix-like DNA-binding domain superfamily PF555_10260 IPR012788 4-carboxymuconolactone decarboxylase PF555_10260 IPR003779 Carboxymuconolactone decarboxylase-like PF555_10260 IPR029032 AhpD-like PF555_10265 IPR015590 Aldehyde dehydrogenase domain PF555_10265 IPR016162 Aldehyde dehydrogenase, N-terminal PF555_10265 IPR010102 Succinate semialdehyde dehydrogenase PF555_10265 IPR016160 Aldehyde dehydrogenase, cysteine active site PF555_10265 IPR016163 Aldehyde dehydrogenase, C-terminal PF555_10265 IPR016161 Aldehyde/histidinol dehydrogenase PF555_10265 IPR029510 Aldehyde dehydrogenase, glutamic acid active site PF555_10275 IPR001248 Purine-cytosine permease PF555_10275 IPR038271 Purine-cytosine permease superfamily PF555_10275 IPR026030 Purine-cytosine permease Fcy2/21/22 PF555_10285 IPR016161 Aldehyde/histidinol dehydrogenase PF555_10285 IPR016163 Aldehyde dehydrogenase, C-terminal PF555_10285 IPR016160 Aldehyde dehydrogenase, cysteine active site PF555_10285 IPR029510 Aldehyde dehydrogenase, glutamic acid active site PF555_10285 IPR016162 Aldehyde dehydrogenase, N-terminal PF555_10285 IPR015590 Aldehyde dehydrogenase domain PF555_10290 IPR036661 Luciferase-like domain superfamily PF555_10290 IPR011251 Luciferase-like domain PF555_10295 IPR012349 FMN-binding split barrel PF555_10295 IPR002563 Flavin reductase like domain PF555_10300 IPR000073 Alpha/beta hydrolase fold-1 PF555_10300 IPR029058 Alpha/Beta hydrolase fold PF555_10320 IPR011577 Cytochrome b561, bacterial/Ni-hydrogenase PF555_10320 IPR016174 Di-haem cytochrome, transmembrane PF555_10325 IPR018028 Catalase, mono-functional, haem-containing PF555_10325 IPR024168 Catalase, SrpA-type, predicted PF555_10325 IPR020835 Catalase superfamily PF555_10325 IPR011614 Catalase core domain PF555_10350 IPR025103 Protein of unknown function DUF4011 PF555_10350 IPR041677 DNA2/NAM7 helicase, AAA domain PF555_10350 IPR041679 DNA2/NAM7 helicase-like, AAA domain PF555_10350 IPR027417 P-loop containing nucleoside triphosphate hydrolase PF555_10350 IPR025103 Protein of unknown function DUF4011 PF555_10350 IPR041677 DNA2/NAM7 helicase, AAA domain PF555_10350 IPR041679 DNA2/NAM7 helicase-like, AAA domain PF555_10350 IPR027417 P-loop containing nucleoside triphosphate hydrolase PF555_10355 IPR029069 HotDog domain superfamily PF555_10355 IPR011973 Phenylacetic acid degradation protein PaaD PF555_10355 IPR003736 Phenylacetic acid degradation-related domain PF555_10355 IPR006683 Thioesterase domain PF555_10360 IPR023446 Carnitine operon protein CaiE PF555_10360 IPR001451 Hexapeptide repeat PF555_10360 IPR011004 Trimeric LpxA-like superfamily PF555_10365 IPR036388 Winged helix-like DNA-binding domain superfamily PF555_10365 IPR012906 PaaX-like, N-terminal PF555_10365 IPR013225 PaaX-like, C-terminal PF555_10365 IPR011965 Phenylacetic acid degradation operon negative regulatory protein PaaX PF555_10370 IPR011880 Phenylacetate-CoA ligase PF555_10370 IPR042099 AMP-dependent synthetase-like superfamily PF555_10370 IPR000873 AMP-dependent synthetase/ligase PF555_10370 IPR028154 AMP-dependent ligase, C-terminal PF555_10375 IPR016039 Thiolase-like PF555_10375 IPR020617 Thiolase, C-terminal PF555_10375 IPR002155 Thiolase PF555_10375 IPR012793 Beta-ketoadipyl CoA thiolase PF555_10375 IPR020613 Thiolase, conserved site PF555_10375 IPR020615 Thiolase, acyl-enzyme intermediate active site PF555_10375 IPR020616 Thiolase, N-terminal PF555_10375 IPR020610 Thiolase, active site PF555_10380 IPR006180 3-hydroxyacyl-CoA dehydrogenase, conserved site PF555_10380 IPR011967 3-hydroxyacyl-CoA dehydrogenase PaaC PF555_10380 IPR006108 3-hydroxyacyl-CoA dehydrogenase, C-terminal PF555_10380 IPR041040 3-hydroxybutyryl-CoA dehydrogenase reduced Rossmann-fold domain PF555_10380 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily PF555_10380 IPR036291 NAD(P)-binding domain superfamily PF555_10380 IPR006176 3-hydroxyacyl-CoA dehydrogenase, NAD binding PF555_10385 IPR029045 ClpP/crotonase-like domain superfamily PF555_10385 IPR001753 Enoyl-CoA hydratase/isomerase PF555_10385 IPR011968 Phenylacetate degradation probable enoyl-CoA hydratase PaaB PF555_10385 IPR014748 Enoyl-CoA hydratase, C-terminal PF555_10390 IPR029045 ClpP/crotonase-like domain superfamily PF555_10390 IPR018376 Enoyl-CoA hydratase/isomerase, conserved site PF555_10390 IPR001753 Enoyl-CoA hydratase/isomerase PF555_10390 IPR014748 Enoyl-CoA hydratase, C-terminal PF555_10395 IPR008333 Flavoprotein pyridine nucleotide cytochrome reductase-like, FAD-binding domain PF555_10395 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase PF555_10395 IPR039261 Ferredoxin-NADP reductase (FNR), nucleotide-binding domain PF555_10395 IPR006058 2Fe-2S ferredoxin, iron-sulphur binding site PF555_10395 IPR017938 Riboflavin synthase-like beta-barrel PF555_10395 IPR017927 FAD-binding domain, ferredoxin reductase-type PF555_10395 IPR012675 Beta-grasp domain superfamily PF555_10395 IPR011884 Phenylacetate-CoA oxygenase/reductase, PaaK subunit PF555_10395 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain PF555_10395 IPR001433 Oxidoreductase FAD/NAD(P)-binding PF555_10395 IPR036010 2Fe-2S ferredoxin-like superfamily PF555_10400 IPR011883 Phenylacetate-CoA oxygenase, PaaJ subunit PF555_10400 IPR002744 MIP18 family-like PF555_10400 IPR034904 Fe-S cluster assembly domain superfamily PF555_10405 IPR007814 1,2-phenylacetyl-CoA epoxidase, subunit A/C PF555_10405 IPR009078 Ferritin-like superfamily PF555_10405 IPR012347 Ferritin-like PF555_10405 IPR011882 1,2-phenylacetyl-CoA epoxidase, subunit C PF555_10410 IPR009359 Phenylacetic acid degradation B PF555_10410 IPR038693 Phenylacetyl-CoA epoxidase, subunit B PF555_10415 IPR012347 Ferritin-like PF555_10415 IPR011881 1,2-phenylacetyl-CoA epoxidase, subunit A PF555_10415 IPR007814 1,2-phenylacetyl-CoA epoxidase, subunit A/C PF555_10415 IPR009078 Ferritin-like superfamily PF555_10420 IPR016163 Aldehyde dehydrogenase, C-terminal PF555_10420 IPR016162 Aldehyde dehydrogenase, N-terminal PF555_10420 IPR011966 Phenylacetic acid degradation protein PaaN PF555_10420 IPR002539 MaoC-like dehydratase domain PF555_10420 IPR029069 HotDog domain superfamily PF555_10420 IPR016161 Aldehyde/histidinol dehydrogenase PF555_10420 IPR015590 Aldehyde dehydrogenase domain PF555_10425 IPR005131 Serine dehydratase beta chain PF555_10425 IPR005130 Serine dehydratase-like, alpha subunit PF555_10425 IPR004644 Iron-sulphur-dependent L-serine dehydratase single chain form PF555_10425 IPR029009 Allosteric substrate binding domain superfamily PF555_10430 IPR002293 Amino acid/polyamine transporter I PF555_10435 IPR015590 Aldehyde dehydrogenase domain PF555_10435 IPR016162 Aldehyde dehydrogenase, N-terminal PF555_10435 IPR016163 Aldehyde dehydrogenase, C-terminal PF555_10435 IPR016161 Aldehyde/histidinol dehydrogenase PF555_10440 IPR020846 Major facilitator superfamily domain PF555_10440 IPR005829 Sugar transporter, conserved site PF555_10440 IPR036259 MFS transporter superfamily PF555_10440 IPR005828 Major facilitator, sugar transporter-like PF555_10450 IPR023753 FAD/NAD(P)-binding domain PF555_10450 IPR017224 Opine oxidase, subunit A/hydrogen cyanide synthase, subunit B PF555_10450 IPR007419 BFD-like [2Fe-2S]-binding domain PF555_10450 IPR036188 FAD/NAD(P)-binding domain superfamily PF555_10450 IPR041854 BFD-like [2Fe-2S]-binding domain superfamily PF555_10460 IPR023080 D-amino acid dehydrogenase DadA PF555_10460 IPR006076 FAD dependent oxidoreductase PF555_10460 IPR036188 FAD/NAD(P)-binding domain superfamily PF555_10465 IPR008794 Proline racemase family PF555_10470 IPR008920 Transcription regulator FadR/GntR, C-terminal PF555_10470 IPR036388 Winged helix-like DNA-binding domain superfamily PF555_10470 IPR036390 Winged helix DNA-binding domain superfamily PF555_10470 IPR000524 Transcription regulator HTH, GntR PF555_10480 IPR002220 DapA-like PF555_10480 IPR020624 Schiff base-forming aldolase, conserved site PF555_10480 IPR020625 Schiff base-forming aldolase, active site PF555_10480 IPR013785 Aldolase-type TIM barrel PF555_10480 IPR005263 4-hydroxy-tetrahydrodipicolinate synthase, DapA PF555_10490 IPR009061 Putative DNA-binding domain superfamily PF555_10490 IPR000551 MerR-type HTH domain PF555_10490 IPR010211 Redox-sensitive transcriptional activator SoxR PF555_10490 IPR015358 Transcription regulator MerR, DNA binding PF555_10500 IPR003828 Epoxyqueuosine reductase QueH PF555_10515 IPR036259 MFS transporter superfamily PF555_10515 IPR020846 Major facilitator superfamily domain PF555_10515 IPR011701 Major facilitator superfamily PF555_10515 IPR004747 Cyanate transport system protein PF555_10520 IPR016193 Cytidine deaminase-like PF555_10520 IPR002125 Cytidine and deoxycytidylate deaminase domain PF555_10520 IPR016192 APOBEC/CMP deaminase, zinc-binding PF555_10530 IPR037404 HTH-type transcriptional activator IlvY, PBP2 domain PF555_10530 IPR036390 Winged helix DNA-binding domain superfamily PF555_10530 IPR000847 Transcription regulator HTH, LysR PF555_10530 IPR036388 Winged helix-like DNA-binding domain superfamily PF555_10530 IPR005119 LysR, substrate-binding PF555_10550 IPR010263 Type VI secretion protein, VC_A0114 PF555_10555 IPR010657 ImpA, N-terminal PF555_10555 IPR017740 Type VI secretion system-associated, ImpA PF555_10560 IPR018368 ClpA/B, conserved site 1 PF555_10560 IPR017729 Type VI secretion system, ATPase ClpV1 PF555_10560 IPR003593 AAA+ ATPase domain PF555_10560 IPR019489 Clp ATPase, C-terminal PF555_10560 IPR036628 Clp, N-terminal domain superfamily PF555_10560 IPR004176 Clp, N-terminal PF555_10560 IPR001270 ClpA/B family PF555_10560 IPR003959 ATPase, AAA-type, core PF555_10560 IPR027417 P-loop containing nucleoside triphosphate hydrolase PF555_10560 IPR041546 ClpA/ClpB, AAA lid domain PF555_10570 IPR002368 Outer membrane protein, OmpA PF555_10570 IPR011250 Outer membrane protein/outer membrane enzyme PagP, beta-barrel PF555_10570 IPR006665 OmpA-like domain PF555_10570 IPR006664 Outer membrane protein, bacterial PF555_10570 IPR000498 Outer membrane protein OmpA-like, transmembrane domain PF555_10570 IPR036737 OmpA-like domain superfamily PF555_10570 IPR006690 Outer membrane protein, OmpA-like, conserved site PF555_10580 IPR025743 IcmF-related, N-terminal domain PF555_10580 IPR010623 Type VI secretion system IcmF, C-terminal PF555_10580 IPR017731 Type VI secretion system, IcmF PF555_10580 IPR009612 IcmF-related PF555_10580 IPR027417 P-loop containing nucleoside triphosphate hydrolase PF555_10610 IPR010269 Type VI secretion protein, EvpB/VC_A0108, tail sheath PF555_10635 IPR003593 AAA+ ATPase domain PF555_10635 IPR003439 ABC transporter-like PF555_10635 IPR017871 ABC transporter, conserved site PF555_10635 IPR027417 P-loop containing nucleoside triphosphate hydrolase PF555_10640 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF PF555_10640 IPR018313 Solute-binding protein family 3, conserved site PF555_10640 IPR001320 Ionotropic glutamate receptor PF555_10645 IPR014085 Allophanate hydrolase PF555_10645 IPR023631 Amidase signature domain PF555_10645 IPR036928 Amidase signature (AS) superfamily PF555_10650 IPR027271 Acetolactate synthase/Transcription factor NikR, C-terminal PF555_10650 IPR013321 Arc-type ribbon-helix-helix PF555_10650 IPR014864 Transcription factor, NikR, nickel binding C-terminal PF555_10650 IPR010985 Ribbon-helix-helix PF555_10650 IPR022988 Nickel-responsive transcriptional regulator NikR PF555_10650 IPR002145 Ribbon-helix-helix protein, CopG PF555_10665 IPR002577 Helix-turn-helix, HxlR type PF555_10665 IPR036390 Winged helix DNA-binding domain superfamily PF555_10665 IPR036388 Winged helix-like DNA-binding domain superfamily PF555_10670 IPR023948 Glutathione-regulated potassium-efflux system ancillary protein KefF PF555_10670 IPR029039 Flavoprotein-like superfamily PF555_10670 IPR003680 Flavodoxin-like fold PF555_10675 IPR011764 Biotin carboxylation domain PF555_10675 IPR011054 Rudiment single hybrid motif PF555_10675 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain PF555_10675 IPR011761 ATP-grasp fold PF555_10675 IPR005481 Biotin carboxylase-like, N-terminal domain PF555_10675 IPR005482 Biotin carboxylase, C-terminal PF555_10675 IPR016185 Pre-ATP-grasp domain superfamily PF555_10695 IPR036291 NAD(P)-binding domain superfamily PF555_10695 IPR013154 Alcohol dehydrogenase, N-terminal PF555_10695 IPR027399 Alcohol dehydrogenase GroES-associated PF555_10695 IPR002328 Alcohol dehydrogenase, zinc-type, conserved site PF555_10695 IPR011032 GroES-like superfamily PF555_10695 IPR013149 Alcohol dehydrogenase, C-terminal PF555_10720 IPR006914 VENN motif-containing domain PF555_10720 IPR011050 Pectin lyase fold/virulence factor PF555_10720 IPR012334 Pectin lyase fold PF555_10720 IPR025157 Hemagglutinin repeat PF555_10720 IPR008638 Filamentous haemagglutinin, N-terminal PF555_10720 IPR010069 Filamentous haemagglutinin, 20-residue x2 repeat PF555_10720 IPR024973 ESPR domain PF555_10725 IPR027282 Two partner secretion pathway transporter PF555_10725 IPR034746 POTRA domain PF555_10725 IPR013686 Polypeptide-transport-associated, ShlB-type PF555_10725 IPR035251 ShlB, POTRA domain PF555_10725 IPR005565 Haemolysin activator HlyB, C-terminal PF555_10730 IPR001807 Chloride channel, voltage gated PF555_10730 IPR014743 Chloride channel, core PF555_10735 IPR011053 Single hybrid motif PF555_10735 IPR005481 Biotin carboxylase-like, N-terminal domain PF555_10735 IPR011054 Rudiment single hybrid motif PF555_10735 IPR011761 ATP-grasp fold PF555_10735 IPR001882 Biotin-binding site PF555_10735 IPR005482 Biotin carboxylase, C-terminal PF555_10735 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain PF555_10735 IPR016185 Pre-ATP-grasp domain superfamily PF555_10735 IPR000089 Biotin/lipoyl attachment PF555_10735 IPR011764 Biotin carboxylation domain PF555_10745 IPR016938 Uncharacterised protein family UPF0317 PF555_10745 IPR038021 Putative hydro-lyase PF555_10745 IPR009906 D-glutamate cyclase PF555_10750 IPR005501 LamB/YcsF/PxpA-like PF555_10750 IPR011330 Glycoside hydrolase/deacetylase, beta/alpha-barrel PF555_10755 IPR001046 NRAMP family PF555_10760 IPR036390 Winged helix DNA-binding domain superfamily PF555_10760 IPR036388 Winged helix-like DNA-binding domain superfamily PF555_10760 IPR000847 Transcription regulator HTH, LysR PF555_10760 IPR005119 LysR, substrate-binding PF555_10780 IPR023198 Phosphoglycolate phosphatase-like, domain 2 PF555_10780 IPR023733 Pyrophosphatase PpaX PF555_10780 IPR041492 Haloacid dehalogenase-like hydrolase PF555_10780 IPR006439 HAD hydrolase, subfamily IA PF555_10780 IPR036412 HAD-like superfamily PF555_10780 IPR023214 HAD superfamily PF555_10800 IPR026578 L-carnitine dehydrogenase PF555_10800 IPR013328 6-phosphogluconate dehydrogenase, domain 2 PF555_10800 IPR036291 NAD(P)-binding domain superfamily PF555_10800 IPR006108 3-hydroxyacyl-CoA dehydrogenase, C-terminal PF555_10800 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily PF555_10800 IPR006176 3-hydroxyacyl-CoA dehydrogenase, NAD binding PF555_10820 IPR004746 Major facilitator superfamily, aromatic acid:H+ symporter family PF555_10820 IPR020846 Major facilitator superfamily domain PF555_10820 IPR036259 MFS transporter superfamily PF555_10820 IPR005829 Sugar transporter, conserved site PF555_10820 IPR011701 Major facilitator superfamily PF555_10835 IPR004960 Bacterial lipid A biosynthesis acyltransferase PF555_10835 IPR011920 Lipid A biosynthesis lauroyl (or palmitoleoyl) acyltransferase PF555_10840 IPR029787 Nucleotide cyclase PF555_10840 IPR000160 GGDEF domain PF555_10840 IPR001633 EAL domain PF555_10840 IPR005330 MHYT domain PF555_10840 IPR035919 EAL domain superfamily PF555_10845 IPR000620 EamA domain PF555_10850 IPR011991 ArsR-like helix-turn-helix domain PF555_10850 IPR000485 AsnC-type HTH domain PF555_10850 IPR011008 Dimeric alpha-beta barrel PF555_10850 IPR036390 Winged helix DNA-binding domain superfamily PF555_10850 IPR019887 Transcription regulator AsnC/Lrp, ligand binding domain PF555_10850 IPR019885 Transcription regulator HTH, AsnC-type, conserved site PF555_10850 IPR036388 Winged helix-like DNA-binding domain superfamily PF555_10850 IPR019888 Transcription regulator AsnC-type PF555_10855 IPR027417 P-loop containing nucleoside triphosphate hydrolase PF555_10855 IPR005748 DNA mismatch repair protein MutS PF555_10855 IPR007695 DNA mismatch repair protein MutS-like, N-terminal PF555_10855 IPR007860 DNA mismatch repair protein MutS, connector domain PF555_10855 IPR000432 DNA mismatch repair protein MutS, C-terminal PF555_10855 IPR036187 DNA mismatch repair protein MutS, core domain superfamily PF555_10855 IPR016151 DNA mismatch repair protein MutS, N-terminal PF555_10855 IPR007696 DNA mismatch repair protein MutS, core PF555_10855 IPR007861 DNA mismatch repair protein MutS, clamp PF555_10855 IPR036678 MutS, connector domain superfamily PF555_10855 IPR017261 DNA mismatch repair protein MutS/MSH PF555_10865 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain PF555_10865 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site PF555_10865 IPR000813 7Fe ferredoxin PF555_10865 IPR022569 Ferredoxin, C-terminal PF555_10875 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase PF555_10875 IPR002935 Class I-like SAM-dependent O-methyltransferase PF555_10885 IPR001451 Hexapeptide repeat PF555_10885 IPR018357 Hexapeptide transferase, conserved site PF555_10885 IPR011004 Trimeric LpxA-like superfamily PF555_10890 IPR023582 Impact family PF555_10890 IPR035647 EF-G domain III/V-like PF555_10890 IPR020568 Ribosomal protein S5 domain 2-type fold PF555_10890 IPR020569 Uncharacterised protein family UPF0029, Impact, conserved site PF555_10890 IPR036956 Impact, N-terminal domain superfamily PF555_10890 IPR001498 Impact, N-terminal PF555_10895 IPR010129 Type I secretion membrane fusion protein, HlyD family PF555_10895 IPR006144 Secretion protein HlyD, conserved site PF555_10905 IPR004291 Transposase, IS66 PF555_10905 IPR024463 Transposase TnpC, homeodomain PF555_10905 IPR024474 Zinc-finger binding domain of transposase IS66 PF555_10905 IPR039552 Transposase IS66, C-terminal PF555_10915 IPR009057 Homeobox-like domain superfamily PF555_10925 IPR003423 Outer membrane efflux protein PF555_10925 IPR010130 Type I secretion outer membrane protein, TolC PF555_10930 IPR003593 AAA+ ATPase domain PF555_10930 IPR030921 LPS export ABC transporter, ATP-binding protein LptB PF555_10930 IPR003439 ABC transporter-like PF555_10930 IPR027417 P-loop containing nucleoside triphosphate hydrolase PF555_10930 IPR032823 Branched-chain amino acid ATP-binding cassette transporter, C-terminal PF555_10930 IPR017871 ABC transporter, conserved site PF555_10935 IPR014340 Lipopolysaccharide export system protein LptA PF555_10935 IPR005653 Organic solvent tolerance-like, N-terminal PF555_10945 IPR036412 HAD-like superfamily PF555_10945 IPR023214 HAD superfamily PF555_10945 IPR010023 KdsC family PF555_10950 IPR035474 KpsF-like, SIS domain PF555_10950 IPR001347 Sugar isomerase (SIS) PF555_10950 IPR004800 Phosphosugar isomerase, KdsD/KpsF-type PF555_10950 IPR000644 CBS domain PF555_10955 IPR015273 Cysteinyl-tRNA synthetase, class Ia, DALR PF555_10955 IPR024909 Cysteinyl-tRNA synthetase/mycothiol ligase PF555_10955 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold PF555_10955 IPR032678 tRNA synthetases class I, catalytic domain PF555_10955 IPR009080 Aminoacyl-tRNA synthetase, class Ia, anticodon-binding PF555_10955 IPR015803 Cysteine-tRNA ligase PF555_10980 IPR011991 ArsR-like helix-turn-helix domain PF555_10980 IPR036390 Winged helix DNA-binding domain superfamily PF555_10980 IPR036388 Winged helix-like DNA-binding domain superfamily PF555_10980 IPR002577 Helix-turn-helix, HxlR type PF555_10985 IPR011701 Major facilitator superfamily PF555_10985 IPR020846 Major facilitator superfamily domain PF555_10985 IPR036259 MFS transporter superfamily PF555_11020 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily PF555_11020 IPR028939 Pyrroline-5-carboxylate reductase, catalytic, N-terminal PF555_11020 IPR029036 Pyrroline-5-carboxylate reductase, dimerisation domain PF555_11020 IPR036291 NAD(P)-binding domain superfamily PF555_11020 IPR000304 Pyrroline-5-carboxylate reductase PF555_11030 IPR002059 Cold-shock protein, DNA-binding PF555_11030 IPR019844 Cold-shock (CSD) domain PF555_11030 IPR012156 Cold shock, CspA PF555_11030 IPR011129 Cold shock domain PF555_11030 IPR012340 Nucleic acid-binding, OB-fold PF555_11035 IPR001123 Amino acid exporter protein, LeuE-type PF555_11065 IPR003753 Exonuclease VII, large subunit PF555_11065 IPR020579 Exonuclease VII, large subunit, C-terminal PF555_11065 IPR025824 OB-fold nucleic acid binding domain PF555_11100 IPR009061 Putative DNA-binding domain superfamily PF555_11100 IPR000551 MerR-type HTH domain PF555_11100 IPR015358 Transcription regulator MerR, DNA binding PF555_11100 IPR011789 Cu(I)-responsive transcriptional regulator PF555_11105 IPR018303 P-type ATPase, phosphorylation site PF555_11105 IPR027256 P-type ATPase, subfamily IB PF555_11105 IPR036163 Heavy metal-associated domain superfamily PF555_11105 IPR006121 Heavy metal-associated domain, HMA PF555_11105 IPR023298 P-type ATPase, transmembrane domain superfamily PF555_11105 IPR006122 Heavy metal-associated domain, copper ion-binding PF555_11105 IPR017969 Heavy-metal-associated, conserved site PF555_11105 IPR023214 HAD superfamily PF555_11105 IPR036412 HAD-like superfamily PF555_11105 IPR008250 P-type ATPase, A domain superfamily PF555_11105 IPR023299 P-type ATPase, cytoplasmic domain N PF555_11105 IPR001757 P-type ATPase PF555_11115 IPR005119 LysR, substrate-binding PF555_11115 IPR036388 Winged helix-like DNA-binding domain superfamily PF555_11115 IPR036390 Winged helix DNA-binding domain superfamily PF555_11115 IPR000847 Transcription regulator HTH, LysR PF555_11125 IPR015879 Aromatic-ring-hydroxylating dioxygenase, alpha subunit, C-terminal domain PF555_11125 IPR001663 Aromatic-ring-hydroxylating dioxygenase, alpha subunit PF555_11125 IPR017639 Benzoate 1,2-dioxygenase, large subunit PF555_11125 IPR017941 Rieske [2Fe-2S] iron-sulphur domain PF555_11125 IPR036922 Rieske [2Fe-2S] iron-sulphur domain superfamily PF555_11125 IPR015881 Aromatic-ring-hydroxylating dioxygenase, 2Fe-2S-binding site PF555_11130 IPR017641 Benzoate 1,2-dioxygenase, small subunit PF555_11130 IPR032710 NTF2-like domain superfamily PF555_11130 IPR000391 Ring-hydroxylating dioxygenase beta subunit PF555_11135 IPR017938 Riboflavin synthase-like beta-barrel PF555_11135 IPR001433 Oxidoreductase FAD/NAD(P)-binding PF555_11135 IPR039261 Ferredoxin-NADP reductase (FNR), nucleotide-binding domain PF555_11135 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase PF555_11135 IPR017927 FAD-binding domain, ferredoxin reductase-type PF555_11135 IPR012675 Beta-grasp domain superfamily PF555_11135 IPR006058 2Fe-2S ferredoxin, iron-sulphur binding site PF555_11135 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain PF555_11135 IPR036010 2Fe-2S ferredoxin-like superfamily PF555_11135 IPR008333 Flavoprotein pyridine nucleotide cytochrome reductase-like, FAD-binding domain PF555_11140 IPR036291 NAD(P)-binding domain superfamily PF555_11140 IPR020904 Short-chain dehydrogenase/reductase, conserved site PF555_11140 IPR002347 Short-chain dehydrogenase/reductase SDR PF555_11145 IPR004711 Benzoate transporter PF555_11150 IPR005829 Sugar transporter, conserved site PF555_11150 IPR011701 Major facilitator superfamily PF555_11150 IPR004746 Major facilitator superfamily, aromatic acid:H+ symporter family PF555_11150 IPR020846 Major facilitator superfamily domain PF555_11150 IPR036259 MFS transporter superfamily PF555_11160 IPR004655 3-oxoacyl-[acyl-carrier-protein] synthase 3 PF555_11160 IPR016039 Thiolase-like PF555_11160 IPR013751 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III PF555_11160 IPR013747 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III, C-terminal PF555_11165 IPR003593 AAA+ ATPase domain PF555_11165 IPR011545 DEAD/DEAH box helicase domain PF555_11165 IPR011709 Domain of unknown function DUF1605 PF555_11165 IPR007502 Helicase-associated domain PF555_11165 IPR014001 Helicase superfamily 1/2, ATP-binding domain PF555_11165 IPR001650 Helicase, C-terminal PF555_11165 IPR024590 RNA helicase HrpA, C-terminal PF555_11165 IPR027417 P-loop containing nucleoside triphosphate hydrolase PF555_11165 IPR010222 RNA helicase HrpA PF555_11170 IPR013766 Thioredoxin domain PF555_11170 IPR036249 Thioredoxin-like superfamily PF555_11170 IPR024706 Peroxiredoxin, AhpC-type PF555_11170 IPR019479 Peroxiredoxin, C-terminal PF555_11170 IPR000866 Alkyl hydroperoxide reductase subunit C/ Thiol specific antioxidant PF555_11170 IPR017559 Alkyl hydroperoxide reductase subunit C PF555_11180 IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase PF555_11180 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase PF555_11190 IPR023753 FAD/NAD(P)-binding domain PF555_11190 IPR036188 FAD/NAD(P)-binding domain superfamily PF555_11190 IPR012081 Alkyl hydroperoxide reductase subunit F PF555_11190 IPR008255 Pyridine nucleotide-disulphide oxidoreductase, class-II, active site PF555_11190 IPR036249 Thioredoxin-like superfamily PF555_11190 IPR012336 Thioredoxin-like fold PF555_11190 IPR002109 Glutaredoxin PF555_11200 IPR010987 Glutathione S-transferase, C-terminal-like PF555_11200 IPR036282 Glutathione S-transferase, C-terminal domain superfamily PF555_11200 IPR004045 Glutathione S-transferase, N-terminal PF555_11200 IPR004046 Glutathione S-transferase, C-terminal PF555_11200 IPR036249 Thioredoxin-like superfamily PF555_11210 IPR003358 tRNA (guanine-N-7) methyltransferase, Trmb type PF555_11210 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase PF555_11215 IPR010987 Glutathione S-transferase, C-terminal-like PF555_11215 IPR036282 Glutathione S-transferase, C-terminal domain superfamily PF555_11215 IPR004045 Glutathione S-transferase, N-terminal PF555_11215 IPR004046 Glutathione S-transferase, C-terminal PF555_11215 IPR036249 Thioredoxin-like superfamily PF555_11225 IPR039567 Glycine zipper domain PF555_11225 IPR006664 Outer membrane protein, bacterial PF555_11225 IPR006665 OmpA-like domain PF555_11225 IPR006690 Outer membrane protein, OmpA-like, conserved site PF555_11225 IPR036737 OmpA-like domain superfamily PF555_11230 IPR032466 Metal-dependent hydrolase PF555_11230 IPR011059 Metal-dependent hydrolase, composite domain superfamily PF555_11230 IPR006680 Amidohydrolase-related PF555_11230 IPR004722 Dihydroorotase PF555_11235 IPR006132 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding PF555_11235 IPR006130 Aspartate/ornithine carbamoyltransferase PF555_11235 IPR036901 Aspartate/ornithine carbamoyltransferase superfamily PF555_11235 IPR002082 Aspartate carbamoyltransferase PF555_11235 IPR006131 Aspartate/ornithine carbamoyltransferase, Asp/Orn-binding domain PF555_11245 IPR004114 THUMP domain PF555_11245 IPR019614 S-adenosylmethionine-dependent methyltransferase PF555_11245 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase PF555_11245 IPR002052 DNA methylase, N-6 adenine-specific, conserved site PF555_11245 IPR017244 Ribosomal RNA large subunit methyltransferase K/L PF555_11245 IPR000241 Putative RNA methylase domain PF555_11260 IPR027417 P-loop containing nucleoside triphosphate hydrolase PF555_11260 IPR028299 ClpA/B, conserved site 2 PF555_11260 IPR018368 ClpA/B, conserved site 1 PF555_11260 IPR001270 ClpA/B family PF555_11260 IPR004176 Clp, N-terminal PF555_11260 IPR041546 ClpA/ClpB, AAA lid domain PF555_11260 IPR019489 Clp ATPase, C-terminal PF555_11260 IPR017730 Chaperonin ClpB PF555_11260 IPR003959 ATPase, AAA-type, core PF555_11260 IPR003593 AAA+ ATPase domain PF555_11260 IPR036628 Clp, N-terminal domain superfamily PF555_11275 IPR015946 K homology domain-like, alpha/beta PF555_11275 IPR003718 OsmC/Ohr family PF555_11275 IPR036102 OsmC/Ohr superfamily PF555_11285 IPR036388 Winged helix-like DNA-binding domain superfamily PF555_11285 IPR018335 Transcription regulator HTH, Crp-type, conserved site PF555_11285 IPR014710 RmlC-like jelly roll fold PF555_11285 IPR018490 Cyclic nucleotide-binding-like PF555_11285 IPR000595 Cyclic nucleotide-binding domain PF555_11285 IPR018488 Cyclic nucleotide-binding, conserved site PF555_11285 IPR036390 Winged helix DNA-binding domain superfamily PF555_11285 IPR012318 Crp-type HTH domain PF555_11290 IPR023210 NADP-dependent oxidoreductase domain PF555_11290 IPR036812 NADP-dependent oxidoreductase domain superfamily PF555_11290 IPR020471 Aldo/keto reductase PF555_11305 IPR033128 Adenylosuccinate synthase, active site PF555_11305 IPR027417 P-loop containing nucleoside triphosphate hydrolase PF555_11305 IPR001114 Adenylosuccinate synthetase PF555_11305 IPR042111 Adenylosuccinate synthetase, domain 3 PF555_11305 IPR042110 Adenylosuccinate synthetase, domain 2 PF555_11305 IPR042109 Adenylosuccinate synthetase, domain 1 PF555_11305 IPR018220 Adenylosuccinate synthase, GTP-binding site PF555_11310 IPR004517 ATP phosphoribosyltransferase regulatory subunit PF555_11310 IPR004516 Histidine-tRNA ligase/ATP phosphoribosyltransferase regulatory subunit PF555_11310 IPR041715 Class II Histidinyl-tRNA synthetase (HisRS)-like catalytic core domain PF555_11320 IPR020830 Glyceraldehyde 3-phosphate dehydrogenase, active site PF555_11320 IPR020829 Glyceraldehyde 3-phosphate dehydrogenase, catalytic domain PF555_11320 IPR020828 Glyceraldehyde 3-phosphate dehydrogenase, NAD(P) binding domain PF555_11320 IPR006424 Glyceraldehyde-3-phosphate dehydrogenase, type I PF555_11320 IPR036291 NAD(P)-binding domain superfamily PF555_11320 IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family PF555_11325 IPR002318 Alanine-tRNA ligase, class IIc PF555_11325 IPR018162 Alanine-tRNA ligase, class IIc, anti-codon-binding domain superfamily PF555_11325 IPR018165 Alanyl-tRNA synthetase, class IIc, core domain PF555_11325 IPR009000 Translation protein, beta-barrel domain superfamily PF555_11325 IPR012947 Threonyl/alanyl tRNA synthetase, SAD PF555_11325 IPR018163 Threonyl/alanyl tRNA synthetase, class II-like, putative editing domain superfamily PF555_11325 IPR003156 DHHA1 domain PF555_11325 IPR018164 Alanyl-tRNA synthetase, class IIc, N-terminal PF555_11325 IPR023033 Alanine-tRNA ligase, eukaryota/bacteria PF555_11330 IPR001341 Aspartate kinase PF555_11330 IPR005260 Aspartate kinase, monofunctional class PF555_11330 IPR018042 Aspartate kinase, conserved site PF555_11330 IPR001048 Aspartate/glutamate/uridylate kinase PF555_11330 IPR041740 Aspartokinase catalytic domain PF555_11330 IPR027795 CASTOR, ACT domain PF555_11330 IPR036393 Acetylglutamate kinase-like superfamily PF555_11330 IPR002912 ACT domain PF555_11335 IPR003751 Translational regulator CsrA PF555_11335 IPR036107 Carbon storage regulator superfamily PF555_11340 IPR022898 Ribonuclease HII PF555_11340 IPR001352 Ribonuclease HII/HIII PF555_11340 IPR024567 Ribonuclease HII/HIII domain PF555_11340 IPR012337 Ribonuclease H-like superfamily PF555_11340 IPR036397 Ribonuclease H superfamily PF555_11350 IPR016174 Di-haem cytochrome, transmembrane PF555_11350 IPR011577 Cytochrome b561, bacterial/Ni-hydrogenase PF555_11355 IPR032466 Metal-dependent hydrolase PF555_11355 IPR006330 Adenosine/adenine deaminase PF555_11355 IPR028892 Adenine deaminase type 2 PF555_11355 IPR001365 Adenosine/AMP deaminase domain PF555_11360 IPR026033 Azaguanine-like transporters PF555_11360 IPR006043 Xanthine/uracil/vitamin C permease PF555_11370 IPR036188 FAD/NAD(P)-binding domain superfamily PF555_11370 IPR020946 Flavin monooxygenase-like PF555_11375 IPR020904 Short-chain dehydrogenase/reductase, conserved site PF555_11375 IPR036291 NAD(P)-binding domain superfamily PF555_11375 IPR002347 Short-chain dehydrogenase/reductase SDR PF555_11385 IPR011051 RmlC-like cupin domain superfamily PF555_11385 IPR014710 RmlC-like jelly roll fold PF555_11385 IPR041602 Quercetin 2,3-dioxygenase, C-terminal cupin domain PF555_11385 IPR003829 Pirin, N-terminal domain PF555_11385 IPR012093 Pirin PF555_11390 IPR036271 Tetracyclin repressor-like, C-terminal domain superfamily PF555_11390 IPR009057 Homeobox-like domain superfamily PF555_11390 IPR023772 DNA-binding HTH domain, TetR-type, conserved site PF555_11390 IPR041490 HTH-type transcriptional repressor KstR2, C-terminal PF555_11390 IPR001647 DNA-binding HTH domain, TetR-type PF555_11400 IPR002347 Short-chain dehydrogenase/reductase SDR PF555_11400 IPR020904 Short-chain dehydrogenase/reductase, conserved site PF555_11400 IPR036291 NAD(P)-binding domain superfamily PF555_11405 IPR036188 FAD/NAD(P)-binding domain superfamily PF555_11405 IPR020946 Flavin monooxygenase-like PF555_11410 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase PF555_11410 IPR011610 S-adenosyl-L-methionine-dependent methyltransferase, putative PF555_11410 IPR007213 Methyltransferase Ppm1/Ppm2/Tcmp PF555_11410 IPR016874 Tetracenomycin polyketide synthesis O-methyltransferase TcmP PF555_11415 IPR032687 HTH-type transcriptional regulator AraC-type, N-terminal PF555_11415 IPR009057 Homeobox-like domain superfamily PF555_11415 IPR018060 DNA binding HTH domain, AraC-type PF555_11420 IPR036188 FAD/NAD(P)-binding domain superfamily PF555_11420 IPR020946 Flavin monooxygenase-like PF555_11425 IPR002347 Short-chain dehydrogenase/reductase SDR PF555_11425 IPR020904 Short-chain dehydrogenase/reductase, conserved site PF555_11425 IPR036291 NAD(P)-binding domain superfamily PF555_11430 IPR002168 Lipase, GDXG, putative histidine active site PF555_11430 IPR033140 Lipase, GDXG, putative serine active site PF555_11430 IPR029058 Alpha/Beta hydrolase fold PF555_11430 IPR013094 Alpha/beta hydrolase fold-3 PF555_11435 IPR036188 FAD/NAD(P)-binding domain superfamily PF555_11435 IPR007867 Glucose-methanol-choline oxidoreductase, C-terminal PF555_11440 IPR005318 Outer membrane porin, bacterial PF555_11440 IPR023614 Porin domain superfamily PF555_11445 IPR020846 Major facilitator superfamily domain PF555_11445 IPR036259 MFS transporter superfamily PF555_11445 IPR005829 Sugar transporter, conserved site PF555_11445 IPR011701 Major facilitator superfamily PF555_11445 IPR004746 Major facilitator superfamily, aromatic acid:H+ symporter family PF555_11450 IPR000917 Sulfatase, N-terminal PF555_11450 IPR024607 Sulfatase, conserved site PF555_11450 IPR017850 Alkaline-phosphatase-like, core domain superfamily PF555_11455 IPR042095 Sulfatase-modifying factor enzyme superfamily PF555_11455 IPR005532 Sulfatase-modifying factor enzyme PF555_11455 IPR016187 C-type lectin fold PF555_11465 IPR017941 Rieske [2Fe-2S] iron-sulphur domain PF555_11465 IPR015881 Aromatic-ring-hydroxylating dioxygenase, 2Fe-2S-binding site PF555_11465 IPR036922 Rieske [2Fe-2S] iron-sulphur domain superfamily PF555_11470 IPR012675 Beta-grasp domain superfamily PF555_11470 IPR017927 FAD-binding domain, ferredoxin reductase-type PF555_11470 IPR039261 Ferredoxin-NADP reductase (FNR), nucleotide-binding domain PF555_11470 IPR001433 Oxidoreductase FAD/NAD(P)-binding PF555_11470 IPR000951 Phthalate dioxygenase reductase PF555_11470 IPR017938 Riboflavin synthase-like beta-barrel PF555_11470 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain PF555_11470 IPR006058 2Fe-2S ferredoxin, iron-sulphur binding site PF555_11470 IPR036010 2Fe-2S ferredoxin-like superfamily PF555_11485 IPR005829 Sugar transporter, conserved site PF555_11485 IPR036259 MFS transporter superfamily PF555_11485 IPR011701 Major facilitator superfamily PF555_11485 IPR020846 Major facilitator superfamily domain PF555_11490 IPR029045 ClpP/crotonase-like domain superfamily PF555_11490 IPR018376 Enoyl-CoA hydratase/isomerase, conserved site PF555_11490 IPR001753 Enoyl-CoA hydratase/isomerase PF555_11495 IPR016163 Aldehyde dehydrogenase, C-terminal PF555_11495 IPR015590 Aldehyde dehydrogenase domain PF555_11495 IPR016162 Aldehyde dehydrogenase, N-terminal PF555_11495 IPR016161 Aldehyde/histidinol dehydrogenase PF555_11495 IPR029510 Aldehyde dehydrogenase, glutamic acid active site PF555_11505 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal PF555_11505 IPR036250 Acyl-CoA dehydrogenase-like, C-terminal PF555_11505 IPR006091 Acyl-CoA oxidase/dehydrogenase, central domain PF555_11505 IPR006089 Acyl-CoA dehydrogenase, conserved site PF555_11505 IPR037069 Acyl-CoA dehydrogenase/oxidase, N-terminal domain superfamily PF555_11505 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily PF555_11505 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal PF555_11510 IPR005318 Outer membrane porin, bacterial PF555_11510 IPR023614 Porin domain superfamily PF555_11515 IPR020915 Uncharacterised protein family UPF0311 PF555_11525 IPR011118 Tannase/feruloyl esterase PF555_11525 IPR029058 Alpha/Beta hydrolase fold PF555_11530 IPR011711 GntR, C-terminal PF555_11530 IPR008920 Transcription regulator FadR/GntR, C-terminal PF555_11530 IPR000524 Transcription regulator HTH, GntR PF555_11530 IPR036388 Winged helix-like DNA-binding domain superfamily PF555_11530 IPR036390 Winged helix DNA-binding domain superfamily PF555_11535 IPR016163 Aldehyde dehydrogenase, C-terminal PF555_11535 IPR015590 Aldehyde dehydrogenase domain PF555_11535 IPR016161 Aldehyde/histidinol dehydrogenase PF555_11535 IPR016162 Aldehyde dehydrogenase, N-terminal PF555_11540 IPR013785 Aldolase-type TIM barrel PF555_11540 IPR002220 DapA-like PF555_11540 IPR017655 5-dehydro-4-deoxyglucarate dehydratase PF555_11545 IPR034598 D-Glucarate dehydratase-like PF555_11545 IPR017653 Glucarate dehydratase PF555_11545 IPR034593 Mandelate racemase-like PF555_11545 IPR029017 Enolase-like, N-terminal PF555_11545 IPR036849 Enolase-like, C-terminal domain superfamily PF555_11545 IPR013342 Mandelate racemase/muconate lactonizing enzyme, C-terminal PF555_11545 IPR029065 Enolase C-terminal domain-like PF555_11550 IPR000849 Sugar phosphate transporter PF555_11550 IPR036259 MFS transporter superfamily PF555_11550 IPR011701 Major facilitator superfamily PF555_11550 IPR020846 Major facilitator superfamily domain PF555_11555 IPR013974 SAF domain PF555_11555 IPR007392 D-galactarate/Altronate dehydratase, C-terminal PF555_11555 IPR017654 Galactarate dehydratase GarD-like PF555_11555 IPR032893 Galactarate dehydratase (L-threo-forming) GarD, Enterobacteriaceae PF555_11560 IPR000620 EamA domain PF555_11565 IPR032687 HTH-type transcriptional regulator AraC-type, N-terminal PF555_11565 IPR009057 Homeobox-like domain superfamily PF555_11565 IPR018060 DNA binding HTH domain, AraC-type PF555_11565 IPR020449 Transcription regulator HTH, AraC- type PF555_11570 IPR012394 Aldehyde dehydrogenase NAD(P)-dependent PF555_11570 IPR015590 Aldehyde dehydrogenase domain PF555_11570 IPR016162 Aldehyde dehydrogenase, N-terminal PF555_11570 IPR016163 Aldehyde dehydrogenase, C-terminal PF555_11570 IPR016161 Aldehyde/histidinol dehydrogenase PF555_11570 IPR029510 Aldehyde dehydrogenase, glutamic acid active site PF555_11575 IPR004840 Amino acid permease, conserved site PF555_11575 IPR004841 Amino acid permease/ SLC12A domain PF555_11580 IPR017650 Arginine N-succinyltransferase PF555_11580 IPR007041 Arginine N-succinyltransferase AstA/AruG PF555_11580 IPR016181 Acyl-CoA N-acyltransferase PF555_11585 IPR005814 Aminotransferase class-III PF555_11585 IPR015424 Pyridoxal phosphate-dependent transferase PF555_11585 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 PF555_11585 IPR015421 Pyridoxal phosphate-dependent transferase, major domain PF555_11585 IPR026330 Succinylornithine transaminase PF555_11585 IPR017652 Acetyl/Succinylornithine transaminase family, bacteria PF555_11585 IPR004636 Acetylornithine/Succinylornithine transaminase family PF555_11595 IPR016161 Aldehyde/histidinol dehydrogenase PF555_11595 IPR016163 Aldehyde dehydrogenase, C-terminal PF555_11595 IPR029510 Aldehyde dehydrogenase, glutamic acid active site PF555_11595 IPR016162 Aldehyde dehydrogenase, N-terminal PF555_11595 IPR015590 Aldehyde dehydrogenase domain PF555_11595 IPR015657 Aminobutyraldehyde dehydrogenase PF555_11595 IPR017749 1-pyrroline dehydrogenase PF555_11605 IPR008920 Transcription regulator FadR/GntR, C-terminal PF555_11605 IPR011711 GntR, C-terminal PF555_11605 IPR000524 Transcription regulator HTH, GntR PF555_11605 IPR036388 Winged helix-like DNA-binding domain superfamily PF555_11605 IPR036390 Winged helix DNA-binding domain superfamily PF555_11615 IPR004841 Amino acid permease/ SLC12A domain PF555_11620 IPR006076 FAD dependent oxidoreductase PF555_11620 IPR036188 FAD/NAD(P)-binding domain superfamily PF555_11620 IPR012727 Glycine oxidase ThiO PF555_11625 IPR004841 Amino acid permease/ SLC12A domain PF555_11625 IPR004840 Amino acid permease, conserved site PF555_11635 IPR008517 Protein of unknown function DUF799 PF555_11645 IPR005534 Curli production assembly/transport component CsgG PF555_11665 IPR004872 Lipoprotein NlpA family PF555_11670 IPR010295 Protein of unknown function DUF898 PF555_11685 IPR013785 Aldolase-type TIM barrel PF555_11685 IPR036188 FAD/NAD(P)-binding domain superfamily PF555_11685 IPR001155 NADH:flavin oxidoreductase/NADH oxidase, N-terminal PF555_11685 IPR023753 FAD/NAD(P)-binding domain PF555_11690 IPR018223 Argininosuccinate synthase, conserved site PF555_11690 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold PF555_11690 IPR001518 Argininosuccinate synthase PF555_11690 IPR023437 Argininosuccinate synthase, type 2 subfamily PF555_11690 IPR024073 Argininosuccinate synthetase mutimerisation domain, C-terminal tail PF555_11690 IPR023434 Argininosuccinate synthase, type 1 subfamily PF555_11690 IPR024074 Argininosuccinate synthetase, catalytic/multimerisation domain body PF555_11710 IPR004721 Dihydroorotase homodimeric type PF555_11710 IPR006680 Amidohydrolase-related PF555_11710 IPR002195 Dihydroorotase, conserved site PF555_11710 IPR032466 Metal-dependent hydrolase PF555_11715 IPR013520 Exonuclease, RNase T/DNA polymerase III PF555_11715 IPR005987 Ribonuclease T PF555_11715 IPR012337 Ribonuclease H-like superfamily PF555_11715 IPR036397 Ribonuclease H superfamily PF555_11725 IPR037066 TonB-dependent receptor, plug domain superfamily PF555_11725 IPR039423 TonB-dependent receptor-like PF555_11725 IPR000531 TonB-dependent receptor-like, beta-barrel PF555_11725 IPR010105 TonB-dependent siderophore receptor PF555_11725 IPR012910 TonB-dependent receptor, plug domain PF555_11725 IPR036942 TonB-dependent receptor-like, beta-barrel domain superfamily PF555_11730 IPR001155 NADH:flavin oxidoreductase/NADH oxidase, N-terminal PF555_11730 IPR036188 FAD/NAD(P)-binding domain superfamily PF555_11730 IPR023753 FAD/NAD(P)-binding domain PF555_11730 IPR013785 Aldolase-type TIM barrel PF555_11735 IPR027417 P-loop containing nucleoside triphosphate hydrolase PF555_11735 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal PF555_11735 IPR017871 ABC transporter, conserved site PF555_11735 IPR003439 ABC transporter-like PF555_11735 IPR003593 AAA+ ATPase domain PF555_11740 IPR035906 MetI-like superfamily PF555_11740 IPR025966 Oligopeptide transport permease C-like, N-terminal domain PF555_11740 IPR000515 ABC transporter type 1, transmembrane domain MetI-like PF555_11745 IPR000515 ABC transporter type 1, transmembrane domain MetI-like PF555_11745 IPR035906 MetI-like superfamily PF555_11750 IPR000914 Solute-binding protein family 5 domain PF555_11750 IPR039424 Solute-binding protein family 5 PF555_11750 IPR030678 Peptide/nickel binding protein, MppA-type PF555_11755 IPR008258 Transglycosylase SLT domain 1 PF555_11755 IPR018392 LysM domain PF555_11755 IPR036779 LysM domain superfamily PF555_11755 IPR000189 Prokaryotic transglycosylase, active site PF555_11755 IPR008258 Transglycosylase SLT domain 1 PF555_11755 IPR000189 Prokaryotic transglycosylase, active site PF555_11755 IPR023346 Lysozyme-like domain superfamily PF555_11755 IPR036779 LysM domain superfamily PF555_11755 IPR023346 Lysozyme-like domain superfamily PF555_11755 IPR018392 LysM domain PF555_11760 IPR006054 DNA polymerase III epsilon subunit, exonuclease domain PF555_11760 IPR006309 DNA polymerase 3, epsilon subunit PF555_11760 IPR013520 Exonuclease, RNase T/DNA polymerase III PF555_11760 IPR036397 Ribonuclease H superfamily PF555_11760 IPR012337 Ribonuclease H-like superfamily PF555_11770 IPR022925 NADH pyrophosphatase NudC PF555_11770 IPR015797 NUDIX hydrolase-like domain superfamily PF555_11770 IPR020084 NUDIX hydrolase, conserved site PF555_11770 IPR000086 NUDIX hydrolase domain PF555_11770 IPR015376 Zinc ribbon, NADH pyrophosphatase PF555_11780 IPR007055 BON domain PF555_11780 IPR014004 Transport-associated and nodulation domain, bacteria PF555_11785 IPR011335 Restriction endonuclease type II-like PF555_11785 IPR011856 tRNA endonuclease-like domain superfamily PF555_11785 IPR003509 Uncharacterised protein family UPF0102 PF555_11790 IPR035996 Tetrapyrrole methylase superfamily PF555_11790 IPR000878 Tetrapyrrole methylase PF555_11790 IPR014776 Tetrapyrrole methylase, subdomain 2 PF555_11790 IPR014777 Tetrapyrrole methylase, subdomain 1 PF555_11790 IPR008189 rRNA small subunit methyltransferase I PF555_11790 IPR018063 SAM-dependent methyltransferase RsmI, conserved site PF555_11800 IPR017685 HTH-type transcriptional regulator ArgP PF555_11800 IPR023490 HTH-type transcriptional regulator ArgP, Gammaproteobacteria PF555_11800 IPR005119 LysR, substrate-binding PF555_11800 IPR000847 Transcription regulator HTH, LysR PF555_11800 IPR036388 Winged helix-like DNA-binding domain superfamily PF555_11800 IPR036390 Winged helix DNA-binding domain superfamily PF555_11805 IPR004777 L-lysine exporter/arginine exporter PF555_11805 IPR023445 Arginine exporter protein ArgO, enterobacteria PF555_11805 IPR001123 Amino acid exporter protein, LeuE-type PF555_11815 IPR009061 Putative DNA-binding domain superfamily PF555_11815 IPR011794 Hg(II)-responsive transcriptional regulator PF555_11815 IPR000551 MerR-type HTH domain PF555_11825 IPR036188 FAD/NAD(P)-binding domain superfamily PF555_11825 IPR010971 Ubiquinone biosynthesis hydroxylase UbiH/COQ6 PF555_11825 IPR002938 FAD-binding domain PF555_11825 IPR018168 Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6, conserved site PF555_11830 IPR002938 FAD-binding domain PF555_11830 IPR036188 FAD/NAD(P)-binding domain superfamily PF555_11830 IPR011295 2-polyprenyl-6-methoxyphenol 4-hydroxylase PF555_11830 IPR018168 Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6, conserved site PF555_11830 IPR010971 Ubiquinone biosynthesis hydroxylase UbiH/COQ6 PF555_11835 IPR029149 Creatinase/Aminopeptidase P/Spt16, N-terminal PF555_11835 IPR036005 Creatinase/aminopeptidase-like PF555_11835 IPR000994 Peptidase M24 PF555_11835 IPR001714 Peptidase M24, methionine aminopeptidase PF555_11835 IPR001131 Peptidase M24B, X-Pro dipeptidase/aminopeptidase P, conserved site PF555_11835 IPR007865 Aminopeptidase P, N-terminal PF555_11870 IPR012549 Phosphoethanolamine transferase, N-terminal PF555_11870 IPR000917 Sulfatase, N-terminal PF555_11870 IPR040423 Phosphoethanolamine transferase PF555_11870 IPR017850 Alkaline-phosphatase-like, core domain superfamily PF555_11925 IPR008258 Transglycosylase SLT domain 1 PF555_11925 IPR023346 Lysozyme-like domain superfamily PF555_11925 IPR000189 Prokaryotic transglycosylase, active site PF555_11925 IPR010090 Phage tail tape measure protein PF555_11925 IPR016047 Peptidase M23 PF555_11925 IPR011055 Duplicated hybrid motif PF555_12100 IPR018876 Bacteriophage P22, antirepressor protein, C-terminal PF555_12100 IPR003497 BRO N-terminal domain PF555_12255 IPR006221 Anthranilate synthase/para-aminobenzoate synthase like domain PF555_12255 IPR017926 Glutamine amidotransferase PF555_12255 IPR029062 Class I glutamine amidotransferase-like PF555_12260 IPR034016 Aminopeptidase N-type PF555_12260 IPR024571 ERAP1-like C-terminal domain PF555_12260 IPR042097 Aminopeptidase N-like , N-terminal PF555_12260 IPR014782 Peptidase M1, membrane alanine aminopeptidase PF555_12260 IPR001930 Peptidase M1, alanine aminopeptidase/leukotriene A4 hydrolase PF555_12265 IPR039426 Vitamin B12 transporter BtuB-like PF555_12265 IPR010101 TonB-dependent vitamin B12 transporter BtuB PF555_12265 IPR000531 TonB-dependent receptor-like, beta-barrel PF555_12265 IPR010917 TonB-dependent receptor, conserved site PF555_12265 IPR036942 TonB-dependent receptor-like, beta-barrel domain superfamily PF555_12265 IPR010916 TonB box, conserved site PF555_12265 IPR012910 TonB-dependent receptor, plug domain PF555_12265 IPR037066 TonB-dependent receptor, plug domain superfamily PF555_12270 IPR036320 Glycosyl transferase family 3, N-terminal domain superfamily PF555_12270 IPR035902 Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain superfamily PF555_12270 IPR005940 Anthranilate phosphoribosyl transferase PF555_12270 IPR000312 Glycosyl transferase, family 3 PF555_12270 IPR017459 Glycosyl transferase family 3, N-terminal domain PF555_12275 IPR013785 Aldolase-type TIM barrel PF555_12275 IPR013798 Indole-3-glycerol phosphate synthase PF555_12275 IPR011060 Ribulose-phosphate binding barrel PF555_12275 IPR001468 Indole-3-glycerol phosphate synthase, conserved site PF555_12290 IPR037165 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding domain superfamily PF555_12290 IPR008274 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding PF555_12290 IPR036856 Aldehyde oxidase/xanthine dehydrogenase, a/b hammerhead superfamily PF555_12290 IPR000674 Aldehyde oxidase/xanthine dehydrogenase, a/b hammerhead PF555_12295 IPR002888 [2Fe-2S]-binding PF555_12295 IPR012675 Beta-grasp domain superfamily PF555_12295 IPR006058 2Fe-2S ferredoxin, iron-sulphur binding site PF555_12295 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain PF555_12295 IPR036010 2Fe-2S ferredoxin-like superfamily PF555_12295 IPR036884 [2Fe-2S]-binding domain superfamily PF555_12300 IPR001474 GTP cyclohydrolase I PF555_12300 IPR020602 GTP cyclohydrolase I domain PF555_12300 IPR018234 GTP cyclohydrolase I, conserved site PF555_12310 IPR012338 Beta-lactamase/transpeptidase-like PF555_12310 IPR001466 Beta-lactamase-related PF555_12310 IPR001586 Beta-lactamase, class-C active site PF555_12320 IPR024474 Zinc-finger binding domain of transposase IS66 PF555_12320 IPR024463 Transposase TnpC, homeodomain PF555_12320 IPR004291 Transposase, IS66 PF555_12320 IPR039552 Transposase IS66, C-terminal PF555_12330 IPR009057 Homeobox-like domain superfamily PF555_12345 IPR008535 Protein of unknown function DUF817 PF555_12350 IPR038071 UROD/MetE-like superfamily PF555_12350 IPR006361 Uroporphyrinogen decarboxylase HemE PF555_12350 IPR000257 Uroporphyrinogen decarboxylase (URO-D) PF555_12360 IPR005801 ADC synthase PF555_12360 IPR004561 Isochorismate synthase PF555_12360 IPR015890 Chorismate-utilising enzyme, C-terminal PF555_12365 IPR008278 4'-phosphopantetheinyl transferase domain PF555_12365 IPR037143 4'-phosphopantetheinyl transferase domain superfamily PF555_12365 IPR041354 4'-phosphopantetheinyl transferase, N-terminal domain PF555_12365 IPR003542 Enterobactin synthetase-like, component D PF555_12370 IPR001031 Thioesterase PF555_12370 IPR012223 Thioesterase type II, NRPS/PKS/S-FAS PF555_12370 IPR029058 Alpha/Beta hydrolase fold PF555_12375 IPR027417 P-loop containing nucleoside triphosphate hydrolase PF555_12375 IPR017871 ABC transporter, conserved site PF555_12375 IPR003439 ABC transporter-like PF555_12375 IPR036640 ABC transporter type 1, transmembrane domain superfamily PF555_12375 IPR011527 ABC transporter type 1, transmembrane domain PF555_12375 IPR003593 AAA+ ATPase domain PF555_12380 IPR011527 ABC transporter type 1, transmembrane domain PF555_12380 IPR003593 AAA+ ATPase domain PF555_12380 IPR014223 ABC transporter, CydDC cysteine exporter (CydDC-E) family, permease/ATP-binding protein CydC PF555_12380 IPR036640 ABC transporter type 1, transmembrane domain superfamily PF555_12380 IPR003439 ABC transporter-like PF555_12380 IPR027417 P-loop containing nucleoside triphosphate hydrolase PF555_12385 IPR021115 Pyridoxal-phosphate binding site PF555_12385 IPR015421 Pyridoxal phosphate-dependent transferase, major domain PF555_12385 IPR015424 Pyridoxal phosphate-dependent transferase PF555_12385 IPR002129 Pyridoxal phosphate-dependent decarboxylase PF555_12385 IPR023523 Histidine decarboxylase, bacteria PF555_12390 IPR000868 Isochorismatase-like PF555_12390 IPR009081 Phosphopantetheine binding ACP domain PF555_12390 IPR036736 ACP-like superfamily PF555_12390 IPR016291 Isochorismatase PF555_12390 IPR036380 Isochorismatase-like superfamily PF555_12395 IPR042099 AMP-dependent synthetase-like superfamily PF555_12395 IPR000873 AMP-dependent synthetase/ligase PF555_12395 IPR020845 AMP-binding, conserved site PF555_12395 IPR025110 AMP-binding enzyme, C-terminal domain PF555_12395 IPR011963 2,3-dihydroxybenzoate-AMP ligase PF555_12400 IPR042099 AMP-dependent synthetase-like superfamily PF555_12400 IPR020845 AMP-binding, conserved site PF555_12400 IPR010071 Amino acid adenylation domain PF555_12400 IPR029058 Alpha/Beta hydrolase fold PF555_12400 IPR036736 ACP-like superfamily PF555_12400 IPR006162 Phosphopantetheine attachment site PF555_12400 IPR009081 Phosphopantetheine binding ACP domain PF555_12400 IPR000873 AMP-dependent synthetase/ligase PF555_12400 IPR023213 Chloramphenicol acetyltransferase-like domain superfamily PF555_12400 IPR001242 Condensation domain PF555_12400 IPR020806 Polyketide synthase, phosphopantetheine-binding domain PF555_12405 IPR025700 L-lysine 6-monooxygenase/L-ornithine 5-monooxygenase PF555_12405 IPR031043 Putative histamine N-monooxygenase PF555_12405 IPR036188 FAD/NAD(P)-binding domain superfamily PF555_12410 IPR000531 TonB-dependent receptor-like, beta-barrel PF555_12410 IPR039423 TonB-dependent receptor-like PF555_12410 IPR037066 TonB-dependent receptor, plug domain superfamily PF555_12410 IPR012910 TonB-dependent receptor, plug domain PF555_12410 IPR030149 TonB-dependent siderophore receptor FcuA/FatA PF555_12410 IPR010916 TonB box, conserved site PF555_12410 IPR036942 TonB-dependent receptor-like, beta-barrel domain superfamily PF555_12410 IPR010917 TonB-dependent receptor, conserved site PF555_12410 IPR010105 TonB-dependent siderophore receptor PF555_12415 IPR002491 ABC transporter periplasmic binding domain PF555_12415 IPR033870 FatB domain PF555_12420 IPR003593 AAA+ ATPase domain PF555_12420 IPR017871 ABC transporter, conserved site PF555_12420 IPR003439 ABC transporter-like PF555_12420 IPR027417 P-loop containing nucleoside triphosphate hydrolase PF555_12425 IPR037294 ABC transporter, BtuC-like PF555_12425 IPR000522 ABC transporter, permease protein, BtuC-like PF555_12430 IPR000522 ABC transporter, permease protein, BtuC-like PF555_12430 IPR037294 ABC transporter, BtuC-like PF555_12435 IPR029058 Alpha/Beta hydrolase fold PF555_12435 IPR036736 ACP-like superfamily PF555_12435 IPR009081 Phosphopantetheine binding ACP domain PF555_12435 IPR020802 Polyketide synthase, thioesterase domain PF555_12435 IPR020806 Polyketide synthase, phosphopantetheine-binding domain PF555_12435 IPR001031 Thioesterase PF555_12435 IPR023213 Chloramphenicol acetyltransferase-like domain superfamily PF555_12435 IPR042099 AMP-dependent synthetase-like superfamily PF555_12435 IPR000873 AMP-dependent synthetase/ligase PF555_12435 IPR010071 Amino acid adenylation domain PF555_12435 IPR025110 AMP-binding enzyme, C-terminal domain PF555_12435 IPR001242 Condensation domain PF555_12435 IPR020845 AMP-binding, conserved site PF555_12440 IPR006162 Phosphopantetheine attachment site PF555_12440 IPR020806 Polyketide synthase, phosphopantetheine-binding domain PF555_12440 IPR010060 Non-ribosomal peptide synthase PF555_12440 IPR009081 Phosphopantetheine binding ACP domain PF555_12440 IPR023213 Chloramphenicol acetyltransferase-like domain superfamily PF555_12440 IPR001242 Condensation domain PF555_12440 IPR036736 ACP-like superfamily PF555_12440 IPR010071 Amino acid adenylation domain PF555_12440 IPR020845 AMP-binding, conserved site PF555_12440 IPR042099 AMP-dependent synthetase-like superfamily PF555_12440 IPR025110 AMP-binding enzyme, C-terminal domain PF555_12440 IPR000873 AMP-dependent synthetase/ligase PF555_12450 IPR039446 Transcriptional regulator DauR-like PF555_12450 IPR039445 Transcriptional regulator DauR-like, HTH domain PF555_12450 IPR013559 YheO-like PF555_12455 IPR001926 Pyridoxal-phosphate dependent enzyme PF555_12455 IPR000634 Serine/threonine dehydratase, pyridoxal-phosphate-binding site PF555_12455 IPR036052 Tryptophan synthase beta subunit-like PLP-dependent enzyme PF555_12460 IPR011051 RmlC-like cupin domain superfamily PF555_12460 IPR014710 RmlC-like jelly roll fold PF555_12460 IPR012093 Pirin PF555_12460 IPR041602 Quercetin 2,3-dioxygenase, C-terminal cupin domain PF555_12460 IPR003829 Pirin, N-terminal domain PF555_12480 IPR001647 DNA-binding HTH domain, TetR-type PF555_12480 IPR036271 Tetracyclin repressor-like, C-terminal domain superfamily PF555_12480 IPR009057 Homeobox-like domain superfamily PF555_12490 IPR024474 Zinc-finger binding domain of transposase IS66 PF555_12490 IPR024463 Transposase TnpC, homeodomain PF555_12490 IPR004291 Transposase, IS66 PF555_12490 IPR039552 Transposase IS66, C-terminal PF555_12500 IPR009057 Homeobox-like domain superfamily PF555_12510 IPR013342 Mandelate racemase/muconate lactonizing enzyme, C-terminal PF555_12510 IPR034620 cis-3-Hydroxy-L-proline dehydratase PF555_12510 IPR036849 Enolase-like, C-terminal domain superfamily PF555_12510 IPR029017 Enolase-like, N-terminal PF555_12510 IPR029065 Enolase C-terminal domain-like PF555_12510 IPR013341 Mandelate racemase/muconate lactonizing enzyme, N-terminal domain PF555_12515 IPR003663 Sugar/inositol transporter PF555_12515 IPR036259 MFS transporter superfamily PF555_12515 IPR005828 Major facilitator, sugar transporter-like PF555_12515 IPR020846 Major facilitator superfamily domain PF555_12515 IPR005829 Sugar transporter, conserved site PF555_12520 IPR036165 YefM-like superfamily PF555_12520 IPR006442 Type II toxin-antitoxin system, antitoxin Phd/YefM PF555_12530 IPR000620 EamA domain PF555_12550 IPR008471 MnmC-like methyltransferase PF555_12550 IPR036188 FAD/NAD(P)-binding domain superfamily PF555_12550 IPR023032 tRNA 5-methylaminomethyl-2-thiouridine biosynthesis bifunctional protein MnmC PF555_12550 IPR017610 tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal PF555_12550 IPR006076 FAD dependent oxidoreductase PF555_12555 IPR036188 FAD/NAD(P)-binding domain superfamily PF555_12555 IPR023753 FAD/NAD(P)-binding domain PF555_12555 IPR041364 Rubredoxin binding domain PF555_12565 IPR016161 Aldehyde/histidinol dehydrogenase PF555_12565 IPR016163 Aldehyde dehydrogenase, C-terminal PF555_12565 IPR016160 Aldehyde dehydrogenase, cysteine active site PF555_12565 IPR029510 Aldehyde dehydrogenase, glutamic acid active site PF555_12565 IPR016162 Aldehyde dehydrogenase, N-terminal PF555_12565 IPR015590 Aldehyde dehydrogenase domain PF555_12565 IPR011264 Betaine aldehyde dehydrogenase PF555_12570 IPR015879 Aromatic-ring-hydroxylating dioxygenase, alpha subunit, C-terminal domain PF555_12570 IPR017941 Rieske [2Fe-2S] iron-sulphur domain PF555_12570 IPR015881 Aromatic-ring-hydroxylating dioxygenase, 2Fe-2S-binding site PF555_12570 IPR036922 Rieske [2Fe-2S] iron-sulphur domain superfamily PF555_12570 IPR001663 Aromatic-ring-hydroxylating dioxygenase, alpha subunit PF555_12575 IPR018093 BCCT transporter, conserved site PF555_12575 IPR000060 BCCT transporter family PF555_12580 IPR005829 Sugar transporter, conserved site PF555_12580 IPR020846 Major facilitator superfamily domain PF555_12580 IPR005828 Major facilitator, sugar transporter-like PF555_12580 IPR036259 MFS transporter superfamily PF555_12585 IPR029149 Creatinase/Aminopeptidase P/Spt16, N-terminal PF555_12585 IPR036005 Creatinase/aminopeptidase-like PF555_12585 IPR000994 Peptidase M24 PF555_12590 IPR013785 Aldolase-type TIM barrel PF555_12590 IPR023663 NADPH dehydrogenase PF555_12590 IPR001155 NADH:flavin oxidoreductase/NADH oxidase, N-terminal PF555_12595 IPR000847 Transcription regulator HTH, LysR PF555_12595 IPR005119 LysR, substrate-binding PF555_12595 IPR036388 Winged helix-like DNA-binding domain superfamily PF555_12595 IPR036390 Winged helix DNA-binding domain superfamily PF555_12600 IPR020449 Transcription regulator HTH, AraC- type PF555_12600 IPR018060 DNA binding HTH domain, AraC-type PF555_12600 IPR009057 Homeobox-like domain superfamily PF555_12600 IPR032687 HTH-type transcriptional regulator AraC-type, N-terminal PF555_12605 IPR017829 Hopanoid-associated sugar epimerase PF555_12605 IPR001509 NAD-dependent epimerase/dehydratase PF555_12605 IPR036291 NAD(P)-binding domain superfamily PF555_12615 IPR000073 Alpha/beta hydrolase fold-1 PF555_12615 IPR000639 Epoxide hydrolase-like PF555_12615 IPR029058 Alpha/Beta hydrolase fold PF555_12620 IPR036188 FAD/NAD(P)-binding domain superfamily PF555_12620 IPR020946 Flavin monooxygenase-like PF555_12630 IPR036390 Winged helix DNA-binding domain superfamily PF555_12630 IPR000847 Transcription regulator HTH, LysR PF555_12630 IPR036388 Winged helix-like DNA-binding domain superfamily PF555_12630 IPR005119 LysR, substrate-binding PF555_12635 IPR036380 Isochorismatase-like superfamily PF555_12635 IPR000868 Isochorismatase-like PF555_12660 IPR002347 Short-chain dehydrogenase/reductase SDR PF555_12660 IPR036291 NAD(P)-binding domain superfamily PF555_12685 IPR007423 Selenoprotein, putative PF555_12690 IPR025299 CstA, C-terminal domain PF555_12690 IPR003706 CstA, N-terminal domain PF555_12695 IPR008991 Translation protein SH3-like domain superfamily PF555_12695 IPR014722 Ribosomal protein L2, domain 2 PF555_12695 IPR012340 Nucleic acid-binding, OB-fold PF555_12695 IPR020599 Translation elongation factor P/YeiP PF555_12695 IPR011768 Translation elongation factor P PF555_12695 IPR001059 Translation elongation factor P/YeiP, central PF555_12695 IPR013185 Translation elongation factor, KOW-like PF555_12695 IPR015365 Elongation factor P, C-terminal PF555_12700 IPR013785 Aldolase-type TIM barrel PF555_12700 IPR022462 Lysine-2,3-aminomutase-like PF555_12700 IPR003739 Lysine-2,3-aminomutase/glutamate 2,3-aminomutase PF555_12700 IPR007197 Radical SAM PF555_12710 IPR024744 Putative cyclic diguanylate phosphodiesterase, CSS motif-containing domain PF555_12710 IPR001633 EAL domain PF555_12710 IPR035919 EAL domain superfamily PF555_12715 IPR002150 Ribosomal protein L31 PF555_12715 IPR034704 L28p-like PF555_12715 IPR027491 Ribosomal protein L31 type A PF555_12715 IPR042105 Ribosomal protein L31 superfamily PF555_12720 IPR038770 Sodium/solute symporter superfamily PF555_12720 IPR016833 Putative sodium bile acid cotransporter PF555_12725 IPR004361 Glyoxalase I PF555_12725 IPR004360 Glyoxalase/fosfomycin resistance/dioxygenase domain PF555_12725 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase PF555_12725 IPR018146 Glyoxalase I, conserved site PF555_12725 IPR037523 Vicinal oxygen chelate (VOC) domain PF555_12730 IPR011701 Major facilitator superfamily PF555_12730 IPR020846 Major facilitator superfamily domain PF555_12730 IPR004752 AmpG-like permease/Acetyl-coenzyme A transporter 1 PF555_12730 IPR036259 MFS transporter superfamily PF555_12735 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup PF555_12735 IPR027065 Lon protease PF555_12735 IPR008269 Peptidase S16, Lon proteolytic domain PF555_12735 IPR020568 Ribosomal protein S5 domain 2-type fold PF555_12735 IPR041699 Lon protease, AAA domain PF555_12740 IPR000847 Transcription regulator HTH, LysR PF555_12740 IPR036390 Winged helix DNA-binding domain superfamily PF555_12740 IPR036388 Winged helix-like DNA-binding domain superfamily PF555_12740 IPR005119 LysR, substrate-binding PF555_12745 IPR011055 Duplicated hybrid motif PF555_12745 IPR018392 LysM domain PF555_12745 IPR036779 LysM domain superfamily PF555_12745 IPR016047 Peptidase M23 PF555_12750 IPR036523 SurE-like phosphatase/nucleotidase superfamily PF555_12750 IPR002828 Survival protein SurE-like phosphatase/nucleotidase PF555_12750 IPR030048 Survival protein SurE PF555_12765 IPR001967 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A, N-terminal PF555_12765 IPR037167 D-Ala-D-Ala carboxypeptidase, C-terminal domain superfamily PF555_12765 IPR018044 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A PF555_12765 IPR015956 Penicillin-binding protein, C-terminal domain superfamily PF555_12765 IPR012338 Beta-lactamase/transpeptidase-like PF555_12765 IPR012907 Peptidase S11, D-Ala-D-Ala carboxypeptidase A, C-terminal PF555_12770 IPR011004 Trimeric LpxA-like superfamily PF555_12770 IPR001451 Hexapeptide repeat PF555_12775 IPR015797 NUDIX hydrolase-like domain superfamily PF555_12775 IPR020476 NUDIX hydrolase PF555_12775 IPR023214 HAD superfamily PF555_12775 IPR006357 HAD-superfamily hydrolase, subfamily IIA PF555_12775 IPR036412 HAD-like superfamily PF555_12775 IPR000086 NUDIX hydrolase domain PF555_12775 IPR020084 NUDIX hydrolase, conserved site PF555_12780 IPR023382 Adenine nucleotide alpha hydrolase-like domains PF555_12780 IPR004506 tRNA-specific 2-thiouridylase PF555_12780 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold PF555_12785 IPR035932 HflD-like superfamily PF555_12785 IPR007451 High frequency lysogenization protein HflD PF555_12790 IPR008948 L-Aspartase-like PF555_12790 IPR020557 Fumarate lyase, conserved site PF555_12790 IPR024083 Fumarase/histidase, N-terminal PF555_12790 IPR000362 Fumarate lyase family PF555_12790 IPR022761 Fumarate lyase, N-terminal PF555_12790 IPR013539 Adenylosuccinate lyase PurB, C-terminal PF555_12790 IPR004769 Adenylosuccinate lyase PF555_12805 IPR013703 Peptidase S49, N-terminal proteobacteria PF555_12805 IPR002142 Peptidase S49 PF555_12805 IPR029045 ClpP/crotonase-like domain superfamily PF555_12810 IPR003593 AAA+ ATPase domain PF555_12810 IPR017871 ABC transporter, conserved site PF555_12810 IPR015850 ABC transporter, phosphate import, PstB PF555_12810 IPR027417 P-loop containing nucleoside triphosphate hydrolase PF555_12810 IPR005670 Phosphate transport system permease protein 1 PF555_12810 IPR003439 ABC transporter-like PF555_12815 IPR000515 ABC transporter type 1, transmembrane domain MetI-like PF555_12815 IPR035906 MetI-like superfamily PF555_12815 IPR005672 Phosphate transport system permease protein PstA PF555_12820 IPR000515 ABC transporter type 1, transmembrane domain MetI-like PF555_12820 IPR035906 MetI-like superfamily PF555_12820 IPR011864 Phosphate ABC transporter, permease protein PstC PF555_12825 IPR011862 Phosphate binding protein PF555_12825 IPR024370 PBP domain PF555_12830 IPR004840 Amino acid permease, conserved site PF555_12830 IPR004841 Amino acid permease/ SLC12A domain PF555_12835 IPR012110 Thiamine pyrophosphate (TPP)-dependent enzyme PF555_12835 IPR011766 Thiamine pyrophosphate enzyme, C-terminal TPP-binding PF555_12835 IPR029061 Thiamin diphosphate-binding fold PF555_12835 IPR029035 DHS-like NAD/FAD-binding domain superfamily PF555_12835 IPR012000 Thiamine pyrophosphate enzyme, central domain PF555_12835 IPR012001 Thiamine pyrophosphate enzyme, N-terminal TPP-binding domain PF555_12840 IPR036390 Winged helix DNA-binding domain superfamily PF555_12840 IPR036388 Winged helix-like DNA-binding domain superfamily PF555_12840 IPR019885 Transcription regulator HTH, AsnC-type, conserved site PF555_12840 IPR019887 Transcription regulator AsnC/Lrp, ligand binding domain PF555_12840 IPR011008 Dimeric alpha-beta barrel PF555_12840 IPR000485 AsnC-type HTH domain PF555_12840 IPR019888 Transcription regulator AsnC-type PF555_12840 IPR011991 ArsR-like helix-turn-helix domain PF555_12845 IPR016160 Aldehyde dehydrogenase, cysteine active site PF555_12845 IPR016163 Aldehyde dehydrogenase, C-terminal PF555_12845 IPR016161 Aldehyde/histidinol dehydrogenase PF555_12845 IPR016162 Aldehyde dehydrogenase, N-terminal PF555_12845 IPR015590 Aldehyde dehydrogenase domain PF555_12845 IPR029510 Aldehyde dehydrogenase, glutamic acid active site PF555_12850 IPR002129 Pyridoxal phosphate-dependent decarboxylase PF555_12850 IPR015424 Pyridoxal phosphate-dependent transferase PF555_12850 IPR015421 Pyridoxal phosphate-dependent transferase, major domain PF555_12850 IPR021115 Pyridoxal-phosphate binding site PF555_12855 IPR004637 2,4-diaminobutyrate 4-transaminase PF555_12855 IPR005814 Aminotransferase class-III PF555_12855 IPR015421 Pyridoxal phosphate-dependent transferase, major domain PF555_12855 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 PF555_12855 IPR015424 Pyridoxal phosphate-dependent transferase PF555_12870 IPR029039 Flavoprotein-like superfamily PF555_12870 IPR003680 Flavodoxin-like fold PF555_12875 IPR005804 Fatty acid desaturase domain PF555_12880 IPR008333 Flavoprotein pyridine nucleotide cytochrome reductase-like, FAD-binding domain PF555_12880 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain PF555_12880 IPR012675 Beta-grasp domain superfamily PF555_12880 IPR017927 FAD-binding domain, ferredoxin reductase-type PF555_12880 IPR039261 Ferredoxin-NADP reductase (FNR), nucleotide-binding domain PF555_12880 IPR001433 Oxidoreductase FAD/NAD(P)-binding PF555_12880 IPR000951 Phthalate dioxygenase reductase PF555_12880 IPR017938 Riboflavin synthase-like beta-barrel PF555_12880 IPR036010 2Fe-2S ferredoxin-like superfamily PF555_12885 IPR009057 Homeobox-like domain superfamily PF555_12885 IPR001647 DNA-binding HTH domain, TetR-type PF555_12885 IPR023764 Transcriptional repressor HTH, FabR PF555_12895 IPR040766 RapA, N-terminal Tudor-like domain 2 PF555_12895 IPR040765 RapA, N-terminal Tudor like domain 1 PF555_12895 IPR000330 SNF2-related, N-terminal domain PF555_12895 IPR038718 SNF2-like, N-terminal domain superfamily PF555_12895 IPR001650 Helicase, C-terminal PF555_12895 IPR027417 P-loop containing nucleoside triphosphate hydrolase PF555_12895 IPR023949 RNA polymerase-associated protein RapA PF555_12895 IPR014001 Helicase superfamily 1/2, ATP-binding domain PF555_12895 IPR022737 RNA polymerase recycling, bacterial, C-terminal PF555_12900 IPR020103 Pseudouridine synthase, catalytic domain superfamily PF555_12900 IPR006224 Pseudouridine synthase, RluC/RluD, conserved site PF555_12900 IPR006145 Pseudouridine synthase, RsuA/RluA PF555_12910 IPR004639 Tetrapyrrole biosynthesis, glutamate-1-semialdehyde aminotransferase PF555_12910 IPR015421 Pyridoxal phosphate-dependent transferase, major domain PF555_12910 IPR015424 Pyridoxal phosphate-dependent transferase PF555_12910 IPR005814 Aminotransferase class-III PF555_12910 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 PF555_12915 IPR013785 Aldolase-type TIM barrel PF555_12915 IPR036206 Thiamin phosphate synthase superfamily PF555_12915 IPR034291 Thiamine phosphate synthase PF555_12915 IPR022998 Thiamine phosphate synthase/TenI PF555_12925 IPR009057 Homeobox-like domain superfamily PF555_12935 IPR004291 Transposase, IS66 PF555_12935 IPR039552 Transposase IS66, C-terminal PF555_12935 IPR024474 Zinc-finger binding domain of transposase IS66 PF555_12935 IPR024463 Transposase TnpC, homeodomain PF555_12960 IPR001431 Peptidase M16, zinc-binding site PF555_12960 IPR011249 Metalloenzyme, LuxS/M16 peptidase-like PF555_12960 IPR011765 Peptidase M16, N-terminal PF555_12960 IPR007863 Peptidase M16, C-terminal PF555_12965 IPR003719 Phenazine biosynthesis PhzF protein PF555_12970 IPR001991 Sodium:dicarboxylate symporter PF555_12970 IPR036458 Sodium:dicarboxylate symporter superfamily PF555_12975 IPR005119 LysR, substrate-binding PF555_12975 IPR000847 Transcription regulator HTH, LysR PF555_12975 IPR036388 Winged helix-like DNA-binding domain superfamily PF555_12975 IPR036390 Winged helix DNA-binding domain superfamily PF555_12980 IPR010645 Uncharacterised MFS-type transporter YbfB PF555_12980 IPR036259 MFS transporter superfamily PF555_13000 IPR024084 Isopropylmalate dehydrogenase-like domain PF555_13000 IPR004439 Isocitrate dehydrogenase NADP-dependent, dimeric, prokaryotic PF555_13000 IPR019818 Isocitrate/isopropylmalate dehydrogenase, conserved site PF555_13005 IPR042092 Pseudouridine synthase, RsuA/RluB/E/F, catalytic domain PF555_13005 IPR018496 Pseudouridine synthase, RsuA/RluB/E/F, conserved site PF555_13005 IPR000748 Pseudouridine synthase, RsuA/RluB/E/F PF555_13005 IPR006145 Pseudouridine synthase, RsuA/RluA PF555_13005 IPR020103 Pseudouridine synthase, catalytic domain superfamily PF555_13010 IPR004436 Isocitrate dehydrogenase NADP-dependent, monomeric PF555_13030 IPR018394 Cryptochrome/DNA photolyase class 1, conserved site, C-terminal PF555_13030 IPR005101 Cryptochrome/DNA photolyase, FAD-binding domain PF555_13030 IPR002081 Cryptochrome/DNA photolyase class 1 PF555_13030 IPR036134 Cryptochrome/DNA photolyase, FAD-binding domain-like superfamily PF555_13030 IPR006050 DNA photolyase, N-terminal PF555_13030 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold PF555_13030 IPR036155 Cryptochrome/photolyase, N-terminal domain superfamily PF555_13045 IPR029044 Nucleotide-diphospho-sugar transferases PF555_13060 IPR003331 UDP-N-acetylglucosamine 2-epimerase domain PF555_13060 IPR029767 UDP-N-acetylglucosamine 2-epimerase WecB-like PF555_13075 IPR004136 Nitronate monooxygenase PF555_13075 IPR013785 Aldolase-type TIM barrel PF555_13080 IPR001269 tRNA-dihydrouridine synthase PF555_13080 IPR018517 tRNA-dihydrouridine synthase, conserved site PF555_13080 IPR013785 Aldolase-type TIM barrel PF555_13080 IPR032887 tRNA-dihydrouridine synthase B PF555_13080 IPR035587 DUS-like, FMN-binding domain PF555_13080 IPR024036 tRNA-dihydrouridine synthase, putative, C-terminal PF555_13080 IPR004652 tRNA-dihydrouridine synthase, TIM-barrel, NifR3 PF555_13085 IPR011673 Protein of unknown function DUF1615 PF555_13095 IPR041739 Glutamate-5-kinase domain PF555_13095 IPR019797 Glutamate 5-kinase, conserved site PF555_13095 IPR005715 Glutamate 5-kinase/delta-1-pyrroline-5-carboxylate synthase PF555_13095 IPR011529 Glutamate 5-kinase PF555_13095 IPR001057 Glutamate/acetylglutamate kinase PF555_13095 IPR036393 Acetylglutamate kinase-like superfamily PF555_13095 IPR036974 PUA domain superfamily PF555_13095 IPR001048 Aspartate/glutamate/uridylate kinase PF555_13095 IPR015947 PUA-like superfamily PF555_13095 IPR002478 PUA domain PF555_13100 IPR035101 GTP-binding protein, Obg-type PF555_13100 IPR031167 OBG-type guanine nucleotide-binding (G) domain PF555_13100 IPR006074 GTP1/OBG, conserved site PF555_13100 IPR006169 GTP1/OBG domain PF555_13100 IPR036726 GTP1/OBG domain superfamily PF555_13100 IPR006073 GTP binding domain PF555_13100 IPR027417 P-loop containing nucleoside triphosphate hydrolase PF555_13100 IPR014100 GTP-binding protein Obg/CgtA PF555_13115 IPR036291 NAD(P)-binding domain superfamily PF555_13115 IPR006424 Glyceraldehyde-3-phosphate dehydrogenase, type I PF555_13115 IPR020830 Glyceraldehyde 3-phosphate dehydrogenase, active site PF555_13115 IPR020829 Glyceraldehyde 3-phosphate dehydrogenase, catalytic domain PF555_13115 IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family PF555_13115 IPR020828 Glyceraldehyde 3-phosphate dehydrogenase, NAD(P) binding domain PF555_13120 IPR000620 EamA domain PF555_13120 IPR004626 RarD protein PF555_13130 IPR001943 UVR domain PF555_13130 IPR006935 Helicase/UvrB, N-terminal PF555_13130 IPR014001 Helicase superfamily 1/2, ATP-binding domain PF555_13130 IPR027417 P-loop containing nucleoside triphosphate hydrolase PF555_13130 IPR036876 UVR domain superfamily PF555_13130 IPR001650 Helicase, C-terminal PF555_13130 IPR041471 UvrB, interaction domain PF555_13130 IPR024759 UvrB, YAD/RRR-motif-containing domain PF555_13130 IPR004807 UvrABC system, subunit B PF555_13140 IPR033416 Periplasmic sensor domain CHASE7 PF555_13140 IPR000160 GGDEF domain PF555_13140 IPR029787 Nucleotide cyclase PF555_13150 IPR015424 Pyridoxal phosphate-dependent transferase PF555_13150 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 PF555_13150 IPR015421 Pyridoxal phosphate-dependent transferase, major domain PF555_13150 IPR004839 Aminotransferase, class I/classII PF555_13150 IPR004838 Aminotransferases, class-I, pyridoxal-phosphate-binding site PF555_13160 IPR029047 Heat shock protein 70kD, peptide-binding domain superfamily PF555_13160 IPR013126 Heat shock protein 70 family PF555_13160 IPR042030 Chaperone protein HscC, nucleotide-binding domain PF555_13160 IPR018181 Heat shock protein 70, conserved site PF555_13190 IPR036291 NAD(P)-binding domain superfamily PF555_13190 IPR002347 Short-chain dehydrogenase/reductase SDR PF555_13190 IPR020904 Short-chain dehydrogenase/reductase, conserved site PF555_13195 IPR012347 Ferritin-like PF555_13195 IPR009078 Ferritin-like superfamily PF555_13195 IPR010386 tRNA-hydroxylase MiaE PF555_13200 IPR013785 Aldolase-type TIM barrel PF555_13200 IPR004569 Pyridoxal phosphate (active vitamin B6) biosynthesis PdxJ PF555_13200 IPR036130 Pyridoxine 5'-phosphate synthase PF555_13205 IPR012340 Nucleic acid-binding, OB-fold PF555_13205 IPR003717 Recombination protein O, RecO PF555_13205 IPR037278 ARFGAP/RecO-like zinc finger PF555_13205 IPR022572 DNA replication/recombination mediator RecO, N-terminal PF555_13215 IPR027417 P-loop containing nucleoside triphosphate hydrolase PF555_13215 IPR015946 K homology domain-like, alpha/beta PF555_13215 IPR006073 GTP binding domain PF555_13215 IPR005662 GTP-binding protein Era PF555_13215 IPR030388 Era-type guanine nucleotide-binding (G) domain PF555_13215 IPR005225 Small GTP-binding protein domain PF555_13215 IPR009019 K homology domain superfamily, prokaryotic type PF555_13215 IPR004044 K Homology domain, type 2 PF555_13220 IPR036389 Ribonuclease III, endonuclease domain superfamily PF555_13220 IPR011907 Ribonuclease III PF555_13220 IPR000999 Ribonuclease III domain PF555_13220 IPR014720 Double-stranded RNA-binding domain PF555_13230 IPR036286 LexA/Signal peptidase-like superfamily PF555_13230 IPR000223 Peptidase S26A, signal peptidase I PF555_13230 IPR019758 Peptidase S26A, signal peptidase I, conserved site PF555_13230 IPR019757 Peptidase S26A, signal peptidase I, lysine active site PF555_13230 IPR019756 Peptidase S26A, signal peptidase I, serine active site PF555_13230 IPR019533 Peptidase S26 PF555_13235 IPR000795 Transcription factor, GTP-binding domain PF555_13235 IPR005225 Small GTP-binding protein domain PF555_13235 IPR027417 P-loop containing nucleoside triphosphate hydrolase PF555_13235 IPR035654 Elongation factor 4, domain IV PF555_13235 IPR013842 GTP-binding protein LepA, C-terminal PF555_13235 IPR031157 Tr-type G domain, conserved site PF555_13235 IPR004161 Translation elongation factor EFTu-like, domain 2 PF555_13235 IPR000640 Elongation factor EFG, domain V-like PF555_13235 IPR035647 EF-G domain III/V-like PF555_13235 IPR006297 Elongation factor 4 PF555_13235 IPR038363 LepA, C-terminal domain superfamily PF555_13245 IPR001940 Peptidase S1C PF555_13245 IPR001478 PDZ domain PF555_13245 IPR036034 PDZ superfamily PF555_13245 IPR011782 Peptidase S1C, Do PF555_13245 IPR009003 Peptidase S1, PA clan PF555_13250 IPR003953 FAD-dependent oxidoreductase 2, FAD binding domain PF555_13250 IPR036188 FAD/NAD(P)-binding domain superfamily PF555_13250 IPR037099 Fumarate reductase/succinate dehydrogenase flavoprotein-like, C-terminal domain superfamily PF555_13250 IPR015939 Fumarate reductase/succinate dehydrogenase flavoprotein-like, C-terminal PF555_13250 IPR005288 L-aspartate oxidase PF555_13250 IPR027477 Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain superfamily PF555_13260 IPR027417 P-loop containing nucleoside triphosphate hydrolase PF555_13260 IPR039430 Thymidylate kinase-like domain PF555_13260 IPR018094 Thymidylate kinase PF555_13265 IPR003770 Endolytic murein transglycosylase PF555_13270 IPR036038 Aminotransferase-like, PLP-dependent enzymes PF555_13270 IPR018300 Aminotransferase, class IV, conserved site PF555_13270 IPR001544 Aminotransferase class IV PF555_13270 IPR017824 Aminodeoxychorismate lyase, class IV PF555_13275 IPR000957 Sulphate/thiosulphate-binding, conserved site PF555_13275 IPR034408 Sulphate/thiosulphate-binding site PF555_13275 IPR005669 Thiosulphate/Sulfate-binding protein PF555_13285 IPR011865 Sulphate ABC transporter, permease protein CysT PF555_13285 IPR000515 ABC transporter type 1, transmembrane domain MetI-like PF555_13285 IPR035906 MetI-like superfamily PF555_13285 IPR005667 Sulphate ABC transporter permease protein 2 PF555_13290 IPR035906 MetI-like superfamily PF555_13290 IPR005667 Sulphate ABC transporter permease protein 2 PF555_13290 IPR011866 Sulphate ABC transporter, permease protein CysW PF555_13290 IPR000515 ABC transporter type 1, transmembrane domain MetI-like PF555_13295 IPR003593 AAA+ ATPase domain PF555_13295 IPR014769 ABC transporter, sulphate/thiosulphate import, ATP-binding protein CysA, C-terminal PF555_13295 IPR003439 ABC transporter-like PF555_13295 IPR017871 ABC transporter, conserved site PF555_13295 IPR008995 Molybdate/tungstate binding, C-terminal PF555_13295 IPR027417 P-loop containing nucleoside triphosphate hydrolase PF555_13295 IPR005666 Sulphate transport system permease protein 1 PF555_13295 IPR024765 TOBE-like domain PF555_13300 IPR036388 Winged helix-like DNA-binding domain superfamily PF555_13300 IPR037423 HTH-type transcriptional regulator CysB, PBP2 domain PF555_13300 IPR005119 LysR, substrate-binding PF555_13300 IPR036390 Winged helix DNA-binding domain superfamily PF555_13300 IPR000847 Transcription regulator HTH, LysR PF555_13310 IPR011004 Trimeric LpxA-like superfamily PF555_13310 IPR023180 Tetrahydrodipicolinate-N-succinyltransferase, chain A, domain 1 PF555_13310 IPR018357 Hexapeptide transferase, conserved site PF555_13310 IPR001451 Hexapeptide repeat PF555_13310 IPR037133 Tetrahydrodipicolinate-N-succinyltransferase, N-terminal domain superfamily PF555_13310 IPR005664 Tetrahydrodipicolinate N-succinyltransferase, transferase hexapeptide repeat family PF555_13315 IPR024924 7-carboxy-7-deazaguanine synthase-like PF555_13315 IPR013785 Aldolase-type TIM barrel PF555_13315 IPR007197 Radical SAM PF555_13320 IPR018317 Queuosine biosynthesis protein QueC PF555_13320 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold PF555_13335 IPR000866 Alkyl hydroperoxide reductase subunit C/ Thiol specific antioxidant PF555_13335 IPR036249 Thioredoxin-like superfamily PF555_13335 IPR013766 Thioredoxin domain PF555_13345 IPR004821 Cytidyltransferase-like domain PF555_13345 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold PF555_13345 IPR000086 NUDIX hydrolase domain PF555_13345 IPR041750 Bifunctional NMN adenylyltransferase/Nudix hydrolase, N-terminal NMNAT domain PF555_13345 IPR015797 NUDIX hydrolase-like domain superfamily PF555_13345 IPR020084 NUDIX hydrolase, conserved site PF555_13350 IPR001753 Enoyl-CoA hydratase/isomerase PF555_13350 IPR029045 ClpP/crotonase-like domain superfamily PF555_13350 IPR014748 Enoyl-CoA hydratase, C-terminal PF555_13350 IPR011968 Phenylacetate degradation probable enoyl-CoA hydratase PaaB PF555_13355 IPR002678 GTP cyclohydrolase 1 type 2/Nif3 PF555_13355 IPR036069 GTP cyclohydrolase 1 type 2/Nif3 superfamily PF555_13355 IPR017221 GTP cyclohydrolase 1 type 2//Nif3, bacteria PF555_13355 IPR015867 Nitrogen regulatory protein PII/ATP phosphoribosyltransferase, C-terminal PF555_13365 IPR020846 Major facilitator superfamily domain PF555_13365 IPR036259 MFS transporter superfamily PF555_13365 IPR011701 Major facilitator superfamily PF555_13365 IPR004812 Drug resistance transporter Bcr/CmlA subfamily PF555_13370 IPR036604 Phosphoribosylformylglycinamidine synthase subunit PurS-like superfamily PF555_13370 IPR036921 PurM-like, N-terminal domain superfamily PF555_13370 IPR036676 PurM-like, C-terminal domain superfamily PF555_13370 IPR041609 Phosphoribosylformylglycinamidine synthase, linker domain PF555_13370 IPR010073 Phosphoribosylformylglycinamidine synthase PurL PF555_13370 IPR010918 PurM-like, C-terminal domain PF555_13370 IPR040707 Phosphoribosylformylglycinamidine synthase, N-terminal PF555_13370 IPR029062 Class I glutamine amidotransferase-like PF555_13370 IPR017926 Glutamine amidotransferase PF555_13375 IPR006674 HD domain PF555_13375 IPR023293 Deoxyguanosinetriphosphate triphosphohydrolase, central domain superfamily PF555_13375 IPR027432 Deoxyguanosinetriphosphate triphosphohydrolase, C-terminal PF555_13375 IPR006261 dNTP triphosphohydrolase PF555_13375 IPR023024 dNTP triphosphohydrolase, type 3 PF555_13375 IPR003607 HD/PDEase domain PF555_13380 IPR010994 RuvA domain 2-like PF555_13380 IPR011114 Holliday junction DNA helicase RuvA, C-terminal PF555_13380 IPR036267 RuvA, C-terminal domain superfamily PF555_13380 IPR012340 Nucleic acid-binding, OB-fold PF555_13380 IPR000085 Bacterial DNA recombination protein RuvA PF555_13380 IPR013849 DNA helicase, Holliday junction RuvA type, domain I, bacterial PF555_13380 IPR003583 Helix-hairpin-helix DNA-binding motif, class 1 PF555_13385 IPR036388 Winged helix-like DNA-binding domain superfamily PF555_13385 IPR008823 RuvB C-terminal winged helix domain PF555_13385 IPR008824 RuvB-like P-loop domain PF555_13385 IPR027417 P-loop containing nucleoside triphosphate hydrolase PF555_13385 IPR004605 DNA helicase, Holliday junction RuvB-type PF555_13385 IPR036390 Winged helix DNA-binding domain superfamily PF555_13385 IPR003593 AAA+ ATPase domain PF555_13385 IPR041445 RuvB, AAA lid domain PF555_13390 IPR011650 Peptidase M20, dimerisation domain PF555_13390 IPR002933 Peptidase M20 PF555_13390 IPR036264 Bacterial exopeptidase dimerisation domain PF555_13390 IPR017439 Amidohydrolase PF555_13395 IPR006684 Acyl-CoA thioester hydrolase YbgC/YbaW family PF555_13395 IPR014166 Tol-Pal system-associated acyl-CoA thioesterase PF555_13395 IPR029069 HotDog domain superfamily PF555_13395 IPR008272 4-hydroxybenzoyl-CoA thioesterase, active site PF555_13395 IPR006683 Thioesterase domain PF555_13400 IPR002898 MotA/TolQ/ExbB proton channel PF555_13400 IPR014163 Tol-Pal system, TolQ PF555_13405 IPR003400 Biopolymer transport protein ExbD/TolR PF555_13405 IPR014168 Tol-Pal system protein TolR PF555_13415 IPR036752 TolB, N-terminal domain superfamily PF555_13415 IPR007195 TolB, N-terminal PF555_13415 IPR011659 WD40-like Beta Propeller PF555_13415 IPR011042 Six-bladed beta-propeller, TolB-like PF555_13415 IPR014167 Tol-Pal system protein TolB PF555_13420 IPR006664 Outer membrane protein, bacterial PF555_13420 IPR006665 OmpA-like domain PF555_13420 IPR006690 Outer membrane protein, OmpA-like, conserved site PF555_13420 IPR036737 OmpA-like domain superfamily PF555_13420 IPR039001 Peptidoglycan-associated lipoprotein PF555_13420 IPR014169 Peptidoglycan-associated lipoprotein, C-terminal PF555_13430 IPR028343 Fructose-1,6-bisphosphatase PF555_13430 IPR033391 Fructose-1-6-bisphosphatase class I, N-terminal PF555_13430 IPR000146 Fructose-1,6-bisphosphatase class 1 PF555_13435 IPR029028 Alpha/beta knot methyltransferases PF555_13435 IPR029064 50S ribosomal protein L30e-like PF555_13435 IPR001537 tRNA/rRNA methyltransferase, SpoU type PF555_13435 IPR013123 RNA 2-O ribose methyltransferase, substrate binding PF555_13435 IPR029026 tRNA (guanine-N1-)-methyltransferase, N-terminal PF555_13455 IPR009057 Homeobox-like domain superfamily PF555_13465 IPR024463 Transposase TnpC, homeodomain PF555_13465 IPR024474 Zinc-finger binding domain of transposase IS66 PF555_13465 IPR004291 Transposase, IS66 PF555_13465 IPR039552 Transposase IS66, C-terminal PF555_13475 IPR009057 Homeobox-like domain superfamily PF555_13485 IPR039552 Transposase IS66, C-terminal PF555_13485 IPR004291 Transposase, IS66 PF555_13485 IPR024463 Transposase TnpC, homeodomain PF555_13485 IPR024474 Zinc-finger binding domain of transposase IS66 PF555_13795 IPR037171 NagB/RpiA transferase-like PF555_13795 IPR024185 5-formyltetrahydrofolate cyclo-ligase-like domain superfamily PF555_13795 IPR002698 5-formyltetrahydrofolate cyclo-ligase PF555_13800 IPR036737 OmpA-like domain superfamily PF555_13800 IPR006664 Outer membrane protein, bacterial PF555_13800 IPR007450 Lipoprotein SmpA/OmlA PF555_13800 IPR037873 BamE-like PF555_13800 IPR006665 OmpA-like domain PF555_13805 IPR008640 Head domain of trimeric autotransporter adhesin PF555_13805 IPR008635 Coiled stalk of trimeric autotransporter adhesin PF555_13805 IPR024973 ESPR domain PF555_13805 IPR011049 Serralysin-like metalloprotease, C-terminal PF555_13805 IPR005594 YadA-like, C-terminal PF555_13810 IPR027543 Lon protease, bacterial PF555_13810 IPR003593 AAA+ ATPase domain PF555_13810 IPR003959 ATPase, AAA-type, core PF555_13810 IPR004815 Lon protease, bacterial/eukaryotic-type PF555_13810 IPR003111 Lon, substrate-binding domain PF555_13810 IPR027065 Lon protease PF555_13810 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup PF555_13810 IPR020568 Ribosomal protein S5 domain 2-type fold PF555_13810 IPR008269 Peptidase S16, Lon proteolytic domain PF555_13810 IPR008268 Peptidase S16, active site PF555_13810 IPR027417 P-loop containing nucleoside triphosphate hydrolase PF555_13810 IPR015947 PUA-like superfamily PF555_13815 IPR029028 Alpha/beta knot methyltransferases PF555_13815 IPR003742 RNA methyltransferase RlmH PF555_13815 IPR029026 tRNA (guanine-N1-)-methyltransferase, N-terminal PF555_13820 IPR004183 Extradiol ring-cleavage dioxygenase, class III enzyme, subunit B PF555_13820 IPR014436 Extradiol aromatic ring-opening dioxygenase, DODA-type PF555_13830 IPR006095 Glutamate/phenylalanine/leucine/valine dehydrogenase PF555_13830 IPR006096 Glutamate/phenylalanine/leucine/valine dehydrogenase, C-terminal PF555_13830 IPR006097 Glutamate/phenylalanine/leucine/valine dehydrogenase, dimerisation domain PF555_13830 IPR014362 Glutamate dehydrogenase PF555_13830 IPR036291 NAD(P)-binding domain superfamily PF555_13830 IPR033922 NAD(P) binding domain of glutamate dehydrogenase PF555_13830 IPR033524 Leu/Phe/Val dehydrogenases active site PF555_13835 IPR016463 Electron transport complex, RnfB/RsxB, Proteobacteria PF555_13835 IPR010207 Ion-translocating oxidoreductase complex, RnfB/RsxB PF555_13835 IPR007202 4Fe-4S domain PF555_13835 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site PF555_13835 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain PF555_13835 IPR011005 Dihydropteroate synthase-like PF555_13840 IPR005759 Endonuclease III PF555_13840 IPR023170 Helix-turn-helix, base-excision DNA repair, C-terminal PF555_13840 IPR003265 HhH-GPD domain PF555_13840 IPR011257 DNA glycosylase PF555_13840 IPR004036 Endonuclease III-like, conserved site-2 PF555_13840 IPR003651 Endonuclease III-like, iron-sulphur cluster loop motif PF555_13840 IPR004035 Endonuclease III, iron-sulphur binding site PF555_13840 IPR000445 Helix-hairpin-helix motif PF555_13850 IPR027417 P-loop containing nucleoside triphosphate hydrolase PF555_13850 IPR007862 Adenylate kinase, active site lid domain PF555_13850 IPR033690 Adenylate kinase, conserved site PF555_13850 IPR006259 Adenylate kinase subfamily PF555_13850 IPR000850 Adenylate kinase/UMP-CMP kinase PF555_13865 IPR001460 Penicillin-binding protein, transpeptidase PF555_13865 IPR012338 Beta-lactamase/transpeptidase-like PF555_13865 IPR005311 Penicillin-binding protein, dimerisation domain PF555_13865 IPR036138 Penicillin-binding protein, dimerisation domain superfamily PF555_13865 IPR017790 Penicillin-binding protein 2 PF555_13870 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase PF555_13870 IPR004398 RNA methyltransferase, RsmD PF555_13870 IPR002052 DNA methylase, N-6 adenine-specific, conserved site PF555_13880 IPR027417 P-loop containing nucleoside triphosphate hydrolase PF555_13880 IPR003495 CobW/HypB/UreG, nucleotide-binding domain PF555_13880 IPR004400 Urease accessory protein UreG PF555_13885 IPR038277 UreF domain superfamily PF555_13885 IPR002639 Urease accessory protein UreF PF555_13890 IPR007864 Urease accessory protein UreE, C-terminal domain PF555_13890 IPR036675 UreE, C-terminal domain superfamily PF555_13890 IPR004029 UreE urease accessory, N-terminal PF555_13890 IPR012406 Urease accessory protein UreE PF555_13890 IPR036118 UreE urease accessory, N-terminal domain superfamily PF555_13895 IPR011612 Urease alpha-subunit, N-terminal domain PF555_13895 IPR029754 Urease nickel binding site PF555_13895 IPR017951 Urease alpha subunit, C-terminal PF555_13895 IPR006680 Amidohydrolase-related PF555_13895 IPR011059 Metal-dependent hydrolase, composite domain superfamily PF555_13895 IPR032466 Metal-dependent hydrolase PF555_13895 IPR005848 Urease, alpha subunit PF555_13895 IPR017950 Urease active site PF555_13900 IPR036461 Urease, beta subunit superfamily PF555_13900 IPR002019 Urease, beta subunit PF555_13905 IPR002026 Urease, gamma/gamma-beta subunit PF555_13905 IPR036463 Urease, gamma subunit superfamily PF555_13905 IPR012010 Urease, gamma subunit PF555_13910 IPR002669 Urease accessory protein UreD PF555_13925 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain superfamily PF555_13925 IPR006254 Isocitrate lyase PF555_13925 IPR039556 ICL/PEPM domain PF555_13925 IPR040442 Pyruvate kinase-like domain superfamily PF555_13930 IPR005119 LysR, substrate-binding PF555_13930 IPR000847 Transcription regulator HTH, LysR PF555_13930 IPR036388 Winged helix-like DNA-binding domain superfamily PF555_13930 IPR036390 Winged helix DNA-binding domain superfamily PF555_13935 IPR036318 FAD-binding, type PCMH-like superfamily PF555_13935 IPR016169 FAD-binding, type PCMH, subdomain 2 PF555_13935 IPR005170 Transporter-associated domain PF555_13935 IPR002550 CNNM, transmembrane domain PF555_13935 IPR000644 CBS domain PF555_13940 IPR004680 Citrate transporter-like domain PF555_13940 IPR014738 Citrate transporter PF555_13955 IPR000795 Transcription factor, GTP-binding domain PF555_13955 IPR009001 Translation elongation factor EF1A/initiation factor IF2gamma, C-terminal PF555_13955 IPR009000 Translation protein, beta-barrel domain superfamily PF555_13955 IPR002891 Adenylyl-sulfate kinase PF555_13955 IPR041757 Sulfate adenylyltransferase subunit CysN, GTP-binding domain PF555_13955 IPR031157 Tr-type G domain, conserved site PF555_13955 IPR027417 P-loop containing nucleoside triphosphate hydrolase PF555_13955 IPR005225 Small GTP-binding protein domain PF555_13955 IPR011779 Sulphate adenylyltransferase, large subunit PF555_13960 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold PF555_13960 IPR002500 Phosphoadenosine phosphosulphate reductase PF555_13960 IPR011784 Sulphate adenylyltransferase, small subunit PF555_13970 IPR026950 Capsule assembly protein Wzi PF555_13970 IPR038636 Capsule assembly protein Wzi superfamily PF555_13975 IPR004365 OB-fold nucleic acid binding domain, AA-tRNA synthetase-type PF555_13975 IPR004364 Aminoacyl-tRNA synthetase, class II (D/K/N) PF555_13975 IPR006195 Aminoacyl-tRNA synthetase, class II PF555_13975 IPR012340 Nucleic acid-binding, OB-fold PF555_13975 IPR018149 Lysyl-tRNA synthetase, class II, C-terminal PF555_13975 IPR002313 Lysine-tRNA ligase, class II PF555_13990 IPR024922 Rubredoxin PF555_13990 IPR024934 Rubredoxin-like domain PF555_13990 IPR024935 Rubredoxin domain PF555_13990 IPR018527 Rubredoxin, iron-binding site PF555_13995 IPR023753 FAD/NAD(P)-binding domain PF555_13995 IPR036188 FAD/NAD(P)-binding domain superfamily PF555_13995 IPR041364 Rubredoxin binding domain PF555_14000 IPR029058 Alpha/Beta hydrolase fold PF555_14000 IPR000073 Alpha/beta hydrolase fold-1 PF555_14000 IPR011942 Poly(3-hydroxyalkanoate) depolymerase PF555_14005 IPR036390 Winged helix DNA-binding domain superfamily PF555_14005 IPR036388 Winged helix-like DNA-binding domain superfamily PF555_14005 IPR000847 Transcription regulator HTH, LysR PF555_14005 IPR005119 LysR, substrate-binding PF555_14020 IPR041108 Polyphosphate kinase, C-terminal domain 1 PF555_14020 IPR003414 Polyphosphate kinase PF555_14020 IPR036832 Polyphosphate kinase N-terminal domain superfamily PF555_14020 IPR025198 Polyphosphate kinase N-terminal domain PF555_14020 IPR025200 Polyphosphate kinase C-terminal domain 2 PF555_14020 IPR036830 Polyphosphate kinase middle domain superfamily PF555_14020 IPR024953 Polyphosphate kinase middle domain PF555_14025 IPR001264 Glycosyl transferase, family 51 PF555_14025 IPR023346 Lysozyme-like domain superfamily PF555_14025 IPR036950 Penicillin binding protein transglycosylase domain PF555_14025 IPR011812 Biosynthetic peptidoglycan transglycosylase PF555_14030 IPR035952 Rhomboid-like superfamily PF555_14030 IPR022764 Peptidase S54, rhomboid domain PF555_14035 IPR038766 Membrane component of ABC transporter, predicted PF555_14040 IPR003593 AAA+ ATPase domain PF555_14040 IPR003439 ABC transporter-like PF555_14040 IPR017871 ABC transporter, conserved site PF555_14040 IPR027417 P-loop containing nucleoside triphosphate hydrolase PF555_14045 IPR036514 SGNH hydrolase superfamily PF555_14045 IPR013830 SGNH hydrolase-type esterase domain PF555_14050 IPR001765 Carbonic anhydrase PF555_14050 IPR015892 Carbonic anhydrase, prokaryotic-like, conserved site PF555_14050 IPR036874 Carbonic anhydrase superfamily PF555_14055 IPR029058 Alpha/Beta hydrolase fold PF555_14055 IPR000073 Alpha/beta hydrolase fold-1 PF555_14055 IPR000639 Epoxide hydrolase-like PF555_14065 IPR036942 TonB-dependent receptor-like, beta-barrel domain superfamily PF555_14065 IPR010917 TonB-dependent receptor, conserved site PF555_14065 IPR010105 TonB-dependent siderophore receptor PF555_14065 IPR000531 TonB-dependent receptor-like, beta-barrel PF555_14065 IPR012910 TonB-dependent receptor, plug domain PF555_14065 IPR039426 Vitamin B12 transporter BtuB-like PF555_14065 IPR037066 TonB-dependent receptor, plug domain superfamily PF555_14075 IPR034904 Fe-S cluster assembly domain superfamily PF555_14075 IPR001075 NIF system FeS cluster assembly, NifU, C-terminal PF555_14075 IPR017726 Fe/S biogenesis protein NfuA PF555_14075 IPR000361 FeS cluster biogenesis PF555_14075 IPR035903 HesB-like domain superfamily PF555_14085 IPR024607 Sulfatase, conserved site PF555_14085 IPR000917 Sulfatase, N-terminal PF555_14085 IPR017850 Alkaline-phosphatase-like, core domain superfamily PF555_14090 IPR016187 C-type lectin fold PF555_14090 IPR005532 Sulfatase-modifying factor enzyme PF555_14090 IPR042095 Sulfatase-modifying factor enzyme superfamily PF555_14105 IPR011780 D-serine ammonia-lyase PF555_14105 IPR001926 Pyridoxal-phosphate dependent enzyme PF555_14105 IPR000634 Serine/threonine dehydratase, pyridoxal-phosphate-binding site PF555_14105 IPR036052 Tryptophan synthase beta subunit-like PLP-dependent enzyme PF555_14110 IPR001204 Phosphate transporter PF555_14115 IPR037010 Vitamin B12-dependent methionine synthase, activation domain superfamily PF555_14115 IPR004223 Vitamin B12-dependent methionine synthase, activation domain PF555_14115 IPR000489 Pterin-binding domain PF555_14115 IPR036594 Methionine synthase domain PF555_14115 IPR011005 Dihydropteroate synthase-like PF555_14115 IPR036589 Homocysteine-binding domain superfamily PF555_14115 IPR003726 Homocysteine-binding domain PF555_14115 IPR006158 Cobalamin (vitamin B12)-binding domain PF555_14115 IPR003759 Cobalamin (vitamin B12)-binding module, cap domain PF555_14115 IPR033706 Methionine synthase, B12-binding domain PF555_14115 IPR036724 Cobalamin-binding domain superfamily PF555_14115 IPR011822 Cobalamin-dependent methionine synthase PF555_14120 IPR029061 Thiamin diphosphate-binding fold PF555_14120 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II PF555_14120 IPR005475 Transketolase-like, pyrimidine-binding domain PF555_14120 IPR033248 Transketolase, C-terminal domain PF555_14125 IPR029061 Thiamin diphosphate-binding fold PF555_14125 IPR005474 Transketolase, N-terminal PF555_14130 IPR020846 Major facilitator superfamily domain PF555_14130 IPR011701 Major facilitator superfamily PF555_14130 IPR036259 MFS transporter superfamily PF555_14135 IPR002347 Short-chain dehydrogenase/reductase SDR PF555_14135 IPR036291 NAD(P)-binding domain superfamily PF555_14135 IPR020904 Short-chain dehydrogenase/reductase, conserved site PF555_14140 IPR005119 LysR, substrate-binding PF555_14140 IPR000847 Transcription regulator HTH, LysR PF555_14140 IPR036388 Winged helix-like DNA-binding domain superfamily PF555_14140 IPR036390 Winged helix DNA-binding domain superfamily PF555_14150 IPR014718 Glycoside hydrolase-type carbohydrate-binding PF555_14150 IPR011013 Galactose mutarotase-like domain superfamily PF555_14150 IPR018052 Aldose 1-epimerase, conserved site PF555_14150 IPR015443 Aldose 1-epimerase PF555_14150 IPR008183 Aldose 1-/Glucose-6-phosphate 1-epimerase PF555_14155 IPR020846 Major facilitator superfamily domain PF555_14155 IPR011701 Major facilitator superfamily PF555_14155 IPR036259 MFS transporter superfamily PF555_14160 IPR037923 Transcription regulator HTH-like PF555_14160 IPR009057 Homeobox-like domain superfamily PF555_14160 IPR018060 DNA binding HTH domain, AraC-type PF555_14160 IPR003313 AraC-type arabinose-binding/dimerisation domain PF555_14160 IPR020449 Transcription regulator HTH, AraC- type PF555_14160 IPR018062 HTH domain AraC-type, conserved site PF555_14165 IPR002645 STAS domain PF555_14165 IPR015868 Glutaminase PF555_14165 IPR012338 Beta-lactamase/transpeptidase-like PF555_14165 IPR036513 STAS domain superfamily PF555_14170 IPR023635 Peptide deformylase PF555_14170 IPR036821 Peptide deformylase superfamily PF555_14175 IPR011701 Major facilitator superfamily PF555_14175 IPR020846 Major facilitator superfamily domain PF555_14175 IPR036259 MFS transporter superfamily PF555_14175 IPR005829 Sugar transporter, conserved site PF555_14185 IPR011766 Thiamine pyrophosphate enzyme, C-terminal TPP-binding PF555_14185 IPR000399 TPP-binding enzyme, conserved site PF555_14185 IPR012000 Thiamine pyrophosphate enzyme, central domain PF555_14185 IPR029061 Thiamin diphosphate-binding fold PF555_14185 IPR039368 Acetolactate synthase large subunit, TPP binding domain PF555_14185 IPR012846 Acetolactate synthase, large subunit, biosynthetic PF555_14185 IPR012001 Thiamine pyrophosphate enzyme, N-terminal TPP-binding domain PF555_14185 IPR029035 DHS-like NAD/FAD-binding domain superfamily PF555_14190 IPR016162 Aldehyde dehydrogenase, N-terminal PF555_14190 IPR011264 Betaine aldehyde dehydrogenase PF555_14190 IPR015590 Aldehyde dehydrogenase domain PF555_14190 IPR016160 Aldehyde dehydrogenase, cysteine active site PF555_14190 IPR016163 Aldehyde dehydrogenase, C-terminal PF555_14190 IPR016161 Aldehyde/histidinol dehydrogenase PF555_14190 IPR029510 Aldehyde dehydrogenase, glutamic acid active site PF555_14195 IPR005106 Aspartate/homoserine dehydrogenase, NAD-binding PF555_14195 IPR002811 Aspartate dehydrogenase PF555_14195 IPR020626 L-aspartate dehydrogenase, prokaryotic PF555_14195 IPR011182 L-aspartate dehydrogenase PF555_14195 IPR036291 NAD(P)-binding domain superfamily PF555_14200 IPR036291 NAD(P)-binding domain superfamily PF555_14200 IPR020904 Short-chain dehydrogenase/reductase, conserved site PF555_14200 IPR002347 Short-chain dehydrogenase/reductase SDR PF555_14205 IPR000073 Alpha/beta hydrolase fold-1 PF555_14205 IPR029058 Alpha/Beta hydrolase fold PF555_14215 IPR000849 Sugar phosphate transporter PF555_14215 IPR036259 MFS transporter superfamily PF555_14215 IPR011701 Major facilitator superfamily PF555_14215 IPR020846 Major facilitator superfamily domain PF555_14220 IPR036188 FAD/NAD(P)-binding domain superfamily PF555_14220 IPR023753 FAD/NAD(P)-binding domain PF555_14220 IPR016156 FAD/NAD-linked reductase, dimerisation domain superfamily PF555_14220 IPR028202 Reductase, C-terminal PF555_14225 IPR017626 2,3-dihydroxybiphenyl 1,2-dioxygenase PF555_14225 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase PF555_14225 IPR004360 Glyoxalase/fosfomycin resistance/dioxygenase domain PF555_14225 IPR037523 Vicinal oxygen chelate (VOC) domain PF555_14225 IPR000486 Extradiol ring-cleavage dioxygenase, class I /II PF555_14230 IPR036291 NAD(P)-binding domain superfamily PF555_14230 IPR020904 Short-chain dehydrogenase/reductase, conserved site PF555_14230 IPR002347 Short-chain dehydrogenase/reductase SDR PF555_14235 IPR036922 Rieske [2Fe-2S] iron-sulphur domain superfamily PF555_14235 IPR017941 Rieske [2Fe-2S] iron-sulphur domain PF555_14245 IPR036922 Rieske [2Fe-2S] iron-sulphur domain superfamily PF555_14245 IPR017941 Rieske [2Fe-2S] iron-sulphur domain PF555_14250 IPR014757 Transcription regulator IclR, C-terminal PF555_14250 IPR005471 Transcription regulator IclR, N-terminal PF555_14250 IPR036388 Winged helix-like DNA-binding domain superfamily PF555_14250 IPR036390 Winged helix DNA-binding domain superfamily PF555_14250 IPR029016 GAF-like domain superfamily PF555_14265 IPR022852 Carnitinyl-CoA dehydratase PF555_14265 IPR029045 ClpP/crotonase-like domain superfamily PF555_14265 IPR018376 Enoyl-CoA hydratase/isomerase, conserved site PF555_14265 IPR001753 Enoyl-CoA hydratase/isomerase PF555_14265 IPR014748 Enoyl-CoA hydratase, C-terminal PF555_14275 IPR029044 Nucleotide-diphospho-sugar transferases PF555_14275 IPR001173 Glycosyltransferase 2-like PF555_14275 IPR023853 Poly-beta-1,6 N-acetyl-D-glucosamine synthase PgaC/IcaA PF555_14280 IPR023854 Poly-beta-1,6-N-acetyl-D-glucosamine N-deacetylase PgaB PF555_14280 IPR032772 Poly-beta-1,6-N-acetyl-D-glucosamine N-deacetylase PgaB, C-terminal PF555_14280 IPR002509 NodB homology domain PF555_14280 IPR011330 Glycoside hydrolase/deacetylase, beta/alpha-barrel PF555_14285 IPR001179 FKBP-type peptidyl-prolyl cis-trans isomerase domain PF555_14290 IPR011335 Restriction endonuclease type II-like PF555_14290 IPR009822 YaeQ PF555_14290 IPR038590 YaeQ superfamily PF555_14295 IPR023954 C4-dicarboxylate transport protein PF555_14295 IPR001991 Sodium:dicarboxylate symporter PF555_14295 IPR018107 Sodium:dicarboxylate symporter, conserved site PF555_14295 IPR036458 Sodium:dicarboxylate symporter superfamily PF555_14300 IPR003495 CobW/HypB/UreG, nucleotide-binding domain PF555_14300 IPR011629 Cobalamin (vitamin B12) biosynthesis CobW-like, C-terminal PF555_14300 IPR027417 P-loop containing nucleoside triphosphate hydrolase PF555_14310 IPR040170 Cytosolic acyl coenzyme A thioester hydrolase PF555_14310 IPR033120 Hotdog acyl-CoA thioesterase (ACOT)-type domain PF555_14310 IPR029069 HotDog domain superfamily PF555_14310 IPR006683 Thioesterase domain PF555_14320 IPR018093 BCCT transporter, conserved site PF555_14320 IPR000060 BCCT transporter family PF555_14325 IPR018093 BCCT transporter, conserved site PF555_14325 IPR000060 BCCT transporter family PF555_14330 IPR017757 Transcriptional repressor BetI PF555_14330 IPR036271 Tetracyclin repressor-like, C-terminal domain superfamily PF555_14330 IPR001647 DNA-binding HTH domain, TetR-type PF555_14330 IPR009057 Homeobox-like domain superfamily PF555_14330 IPR039538 BetI-type transcriptional repressor, C-terminal PF555_14335 IPR011264 Betaine aldehyde dehydrogenase PF555_14335 IPR016161 Aldehyde/histidinol dehydrogenase PF555_14335 IPR016163 Aldehyde dehydrogenase, C-terminal PF555_14335 IPR016160 Aldehyde dehydrogenase, cysteine active site PF555_14335 IPR015590 Aldehyde dehydrogenase domain PF555_14335 IPR029510 Aldehyde dehydrogenase, glutamic acid active site PF555_14335 IPR016162 Aldehyde dehydrogenase, N-terminal PF555_14340 IPR011533 Oxygen-dependent choline dehydrogenase PF555_14340 IPR036188 FAD/NAD(P)-binding domain superfamily PF555_14340 IPR000172 Glucose-methanol-choline oxidoreductase, N-terminal PF555_14340 IPR007867 Glucose-methanol-choline oxidoreductase, C-terminal PF555_14340 IPR012132 Glucose-methanol-choline oxidoreductase PF555_14340 IPR027424 Glucose Oxidase, domain 2 PF555_14345 IPR024463 Transposase TnpC, homeodomain PF555_14345 IPR004291 Transposase, IS66 PF555_14345 IPR024474 Zinc-finger binding domain of transposase IS66 PF555_14345 IPR039552 Transposase IS66, C-terminal PF555_14355 IPR009057 Homeobox-like domain superfamily PF555_14360 IPR036188 FAD/NAD(P)-binding domain superfamily PF555_14360 IPR006231 Malate:quinone-oxidoreductase PF555_14370 IPR017226 Betaine-homocysteine S-methyltransferase, BHMT PF555_14370 IPR003726 Homocysteine-binding domain PF555_14370 IPR036589 Homocysteine-binding domain superfamily PF555_14375 IPR002293 Amino acid/polyamine transporter I PF555_14375 IPR004754 Amino acid antiporter PF555_14405 IPR037026 Vgr protein, OB-fold domain superfamily PF555_14405 IPR006533 Type VI secretion system, RhsGE-associated Vgr protein PF555_14405 IPR017847 Type VI secretion system, RhsGE-associated Vgr family subset PF555_14405 IPR028244 Putative type VI secretion system, Rhs element associated Vgr domain PF555_14405 IPR006531 Gp5 N-terminal PF555_14405 IPR018769 Domain of unknown function DUF2345, Vgr C-terminal PF555_14425 IPR020846 Major facilitator superfamily domain PF555_14425 IPR036259 MFS transporter superfamily PF555_14425 IPR005829 Sugar transporter, conserved site PF555_14425 IPR005828 Major facilitator, sugar transporter-like PF555_14455 IPR002052 DNA methylase, N-6 adenine-specific, conserved site PF555_14455 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase PF555_14455 IPR038333 N6 adenine-specific DNA methyltransferase, N-terminal domain superfamily PF555_14455 IPR022749 N6 adenine-specific DNA methyltransferase, N-terminal domain PF555_14455 IPR003356 DNA methylase, adenine-specific PF555_14455 IPR004546 Restriction endonuclease, type I, HsdM PF555_14460 IPR007409 Restriction endonuclease, type I, HsdR, N-terminal PF555_14460 IPR004473 Restriction endonuclease, type I, HsdR PF555_14460 IPR040980 SWI2/SNF2 ATPase PF555_14460 IPR014001 Helicase superfamily 1/2, ATP-binding domain PF555_14460 IPR021810 Protein of unknown function DUF3387 PF555_14460 IPR027417 P-loop containing nucleoside triphosphate hydrolase PF555_14475 IPR038333 N6 adenine-specific DNA methyltransferase, N-terminal domain superfamily PF555_14475 IPR003356 DNA methylase, adenine-specific PF555_14475 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase PF555_14480 IPR009057 Homeobox-like domain superfamily PF555_14490 IPR039552 Transposase IS66, C-terminal PF555_14490 IPR004291 Transposase, IS66 PF555_14490 IPR024463 Transposase TnpC, homeodomain PF555_14490 IPR024474 Zinc-finger binding domain of transposase IS66 PF555_14525 IPR011344 Single-stranded DNA-binding protein PF555_14525 IPR012340 Nucleic acid-binding, OB-fold PF555_14525 IPR000424 Primosome PriB/single-strand DNA-binding PF555_14570 IPR038488 Integrase, DNA-binding domain superfamily PF555_14570 IPR025166 Integrase, DNA-binding domain PF555_14570 IPR010998 Integrase/recombinase, N-terminal PF555_14570 IPR002104 Integrase, catalytic domain PF555_14570 IPR013762 Integrase-like, catalytic domain superfamily PF555_14570 IPR011010 DNA breaking-rejoining enzyme, catalytic core PF555_14580 IPR000101 Gamma-glutamyltranspeptidase PF555_14580 IPR029055 Nucleophile aminohydrolases, N-terminal PF555_14585 IPR020846 Major facilitator superfamily domain PF555_14585 IPR036259 MFS transporter superfamily PF555_14585 IPR004638 Drug resistance transporter EmrB-like PF555_14585 IPR011701 Major facilitator superfamily PF555_14590 IPR039562 Membrane fusion protein, biotin-lipoyl like domain PF555_14595 IPR029069 HotDog domain superfamily PF555_14595 IPR006683 Thioesterase domain PF555_14595 IPR003736 Phenylacetic acid degradation-related domain PF555_14600 IPR001731 Delta-aminolevulinic acid dehydratase PF555_14600 IPR030656 Delta-aminolevulinic acid dehydratase, active site PF555_14600 IPR013785 Aldolase-type TIM barrel PF555_14605 IPR012727 Glycine oxidase ThiO PF555_14605 IPR036188 FAD/NAD(P)-binding domain superfamily PF555_14605 IPR006076 FAD dependent oxidoreductase PF555_14610 IPR013549 Domain of unknown function DUF1731 PF555_14610 IPR001509 NAD-dependent epimerase/dehydratase PF555_14610 IPR036291 NAD(P)-binding domain superfamily PF555_14610 IPR010099 Epimerase family protein SDR39U1 PF555_14630 IPR004843 Calcineurin-like phosphoesterase domain, ApaH type PF555_14630 IPR041796 Mre11 nuclease, N-terminal metallophosphatase domain PF555_14630 IPR004593 Nuclease SbcCD subunit D PF555_14630 IPR026843 Nuclease SbcCD subunit D, C-terminal domain PF555_14630 IPR029052 Metallo-dependent phosphatase-like PF555_14635 IPR027417 P-loop containing nucleoside triphosphate hydrolase PF555_14640 IPR001608 Alanine racemase, N-terminal PF555_14640 IPR029066 PLP-binding barrel PF555_14640 IPR011078 Pyridoxal phosphate homeostasis protein PF555_14645 IPR001482 Type II/IV secretion system protein PF555_14645 IPR027417 P-loop containing nucleoside triphosphate hydrolase PF555_14645 IPR006321 Pilus retraction protein PilT PF555_14645 IPR003593 AAA+ ATPase domain PF555_14650 IPR027417 P-loop containing nucleoside triphosphate hydrolase PF555_14650 IPR006321 Pilus retraction protein PilT PF555_14650 IPR001482 Type II/IV secretion system protein PF555_14655 IPR002481 Ferric-uptake regulator PF555_14655 IPR036388 Winged helix-like DNA-binding domain superfamily PF555_14655 IPR036390 Winged helix DNA-binding domain superfamily PF555_14660 IPR026592 Outer membrane protein assembly factor BamE PF555_14660 IPR037873 BamE-like PF555_14660 IPR007450 Lipoprotein SmpA/OmlA PF555_14665 IPR005346 RnfH protein PF555_14665 IPR037021 RnfH superfamily PF555_14665 IPR016155 Molybdopterin synthase/thiamin biosynthesis sulphur carrier, beta-grasp PF555_14675 IPR023504 Bacteriohemerythrin-like protein PF555_14675 IPR012312 Haemerythrin-like PF555_14675 IPR016131 Haemerythrin, iron-binding site PF555_14675 IPR035938 Hemerythrin-like superfamily PF555_14675 IPR012827 Haemerythrin, metal-binding domain PF555_14680 IPR017932 Glutamine amidotransferase type 2 domain PF555_14680 IPR029055 Nucleophile aminohydrolases, N-terminal PF555_14680 IPR026869 Putative glutamine amidotransferase type 2 PF555_14690 IPR036393 Acetylglutamate kinase-like superfamily PF555_14690 IPR004662 Acetylglutamate kinase family PF555_14690 IPR037528 Acetylglutamate kinase ArgB PF555_14690 IPR041727 N-Acetyl-L-glutamate kinase, cyclic PF555_14690 IPR001048 Aspartate/glutamate/uridylate kinase PF555_14695 IPR005845 Alpha-D-phosphohexomutase, alpha/beta/alpha domain II PF555_14695 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III PF555_14695 IPR005846 Alpha-D-phosphohexomutase, alpha/beta/alpha domain III PF555_14695 IPR005843 Alpha-D-phosphohexomutase, C-terminal PF555_14695 IPR036900 Alpha-D-phosphohexomutase, C-terminal domain superfamily PF555_14695 IPR016066 Alpha-D-phosphohexomutase, conserved site PF555_14695 IPR005841 Alpha-D-phosphohexomutase superfamily PF555_14695 IPR005844 Alpha-D-phosphohexomutase, alpha/beta/alpha domain I PF555_14700 IPR029054 dUTPase-like PF555_14700 IPR036157 dUTPase-like superfamily PF555_14700 IPR008181 Deoxyuridine triphosphate nucleotidohydrolase PF555_14700 IPR033704 dUTPase, trimeric PF555_14705 IPR014016 UvrD-like helicase, ATP-binding domain PF555_14705 IPR027417 P-loop containing nucleoside triphosphate hydrolase PF555_14705 IPR005752 ATP-dependent DNA helicase Rep PF555_14705 IPR000212 DNA helicase, UvrD/REP type PF555_14705 IPR014017 UvrD-like DNA helicase, C-terminal PF555_14705 IPR034739 UvrD/AddA helicase, N-terminal PF555_14705 IPR013986 DExx box DNA helicase domain superfamily PF555_14710 IPR039567 Glycine zipper domain PF555_14710 IPR006664 Outer membrane protein, bacterial PF555_14710 IPR006665 OmpA-like domain PF555_14710 IPR006690 Outer membrane protein, OmpA-like, conserved site PF555_14710 IPR036737 OmpA-like domain superfamily PF555_14715 IPR002123 Phospholipid/glycerol acyltransferase PF555_14725 IPR016098 Cyclase-associated protein CAP/septum formation inhibitor MinC, C-terminal PF555_14725 IPR013033 Septum formation inhibitor MinC PF555_14725 IPR036145 Septum formation inhibitor MinC, C-terminal domain superfamily PF555_14725 IPR005526 Septum formation inhibitor MinC, C-terminal PF555_14730 IPR025501 ATP binding protein MinD PF555_14730 IPR027417 P-loop containing nucleoside triphosphate hydrolase PF555_14730 IPR002586 CobQ/CobB/MinD/ParA nucleotide binding domain PF555_14730 IPR010223 ATP binding protein MinD, bacterial-type PF555_14735 IPR005527 Cell division topological specificity factor MinE PF555_14735 IPR036707 Cell division topological specificity factor MinE superfamily PF555_14745 IPR001123 Amino acid exporter protein, LeuE-type PF555_14745 IPR004778 Homoserine/Threonine efflux protein PF555_14750 IPR025199 DNA translocase FtsK, 4TM region PF555_14750 IPR041027 FtsK alpha domain PF555_14750 IPR002543 FtsK domain PF555_14750 IPR018541 FtsK gamma domain PF555_14750 IPR027417 P-loop containing nucleoside triphosphate hydrolase PF555_14750 IPR036388 Winged helix-like DNA-binding domain superfamily PF555_14750 IPR036390 Winged helix DNA-binding domain superfamily PF555_14755 IPR036188 FAD/NAD(P)-binding domain superfamily PF555_14755 IPR023753 FAD/NAD(P)-binding domain PF555_14755 IPR008255 Pyridine nucleotide-disulphide oxidoreductase, class-II, active site PF555_14755 IPR005982 Thioredoxin reductase PF555_14760 IPR016181 Acyl-CoA N-acyltransferase PF555_14760 IPR004616 Leucyl/phenylalanyl-tRNA-protein transferase PF555_14760 IPR042203 Leucyl/phenylalanyl-tRNA-protein transferase, C-terminal PF555_14765 IPR016181 Acyl-CoA N-acyltransferase PF555_14765 IPR017138 Aspartate/glutamate leucyltransferase PF555_14765 IPR030700 N-end rule aminoacyl transferase PF555_14765 IPR007472 N-end rule aminoacyl transferase, C-terminal PF555_14765 IPR007471 N-end aminoacyl transferase, N-terminal PF555_14770 IPR000182 GNAT domain PF555_14770 IPR016181 Acyl-CoA N-acyltransferase PF555_14770 IPR006464 N-acetyltransferase RimI/Ard1 PF555_14785 IPR041709 Elongation factor Tu (EF-Tu), GTP-binding domain PF555_14785 IPR004160 Translation elongation factor EFTu/EF1A, C-terminal PF555_14785 IPR009001 Translation elongation factor EF1A/initiation factor IF2gamma, C-terminal PF555_14785 IPR000795 Transcription factor, GTP-binding domain PF555_14785 IPR009000 Translation protein, beta-barrel domain superfamily PF555_14785 IPR005225 Small GTP-binding protein domain PF555_14785 IPR027417 P-loop containing nucleoside triphosphate hydrolase PF555_14785 IPR004541 Translation elongation factor EFTu/EF1A, bacterial/organelle PF555_14785 IPR031157 Tr-type G domain, conserved site PF555_14785 IPR004161 Translation elongation factor EFTu-like, domain 2 PF555_14785 IPR033720 Elongation factor Tu, domain 2 PF555_14790 IPR005517 Translation elongation factor EFG/EF2, domain IV PF555_14790 IPR004540 Translation elongation factor EFG/EF2 PF555_14790 IPR009000 Translation protein, beta-barrel domain superfamily PF555_14790 IPR000795 Transcription factor, GTP-binding domain PF555_14790 IPR041095 Elongation Factor G, domain II PF555_14790 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup PF555_14790 IPR009022 Elongation factor G, domain III PF555_14790 IPR005225 Small GTP-binding protein domain PF555_14790 IPR000640 Elongation factor EFG, domain V-like PF555_14790 IPR035647 EF-G domain III/V-like PF555_14790 IPR035649 EFG, domain V PF555_14790 IPR020568 Ribosomal protein S5 domain 2-type fold PF555_14790 IPR004161 Translation elongation factor EFTu-like, domain 2 PF555_14790 IPR027417 P-loop containing nucleoside triphosphate hydrolase PF555_14790 IPR031157 Tr-type G domain, conserved site PF555_14795 IPR005717 Ribosomal protein S7, bacterial/organellar-type PF555_14795 IPR020606 Ribosomal protein S7, conserved site PF555_14795 IPR023798 Ribosomal protein S7 domain PF555_14795 IPR036823 Ribosomal protein S7 domain superfamily PF555_14795 IPR000235 Ribosomal protein S5/S7 PF555_14800 IPR012340 Nucleic acid-binding, OB-fold PF555_14800 IPR006032 Ribosomal protein S12/S23 PF555_14800 IPR005679 Ribosomal protein S12, bacterial-type PF555_14810 IPR018201 Beta-ketoacyl synthase, active site PF555_14810 IPR014031 Beta-ketoacyl synthase, C-terminal PF555_14810 IPR000794 Beta-ketoacyl synthase PF555_14810 IPR020841 Polyketide synthase, beta-ketoacyl synthase domain PF555_14810 IPR016039 Thiolase-like PF555_14810 IPR014030 Beta-ketoacyl synthase, N-terminal PF555_14815 IPR005265 Protoporphyrinogen oxidase HemJ-like PF555_14820 IPR008778 Pirin, C-terminal domain PF555_14820 IPR003829 Pirin, N-terminal domain PF555_14820 IPR014710 RmlC-like jelly roll fold PF555_14820 IPR011051 RmlC-like cupin domain superfamily PF555_14820 IPR012093 Pirin PF555_14830 IPR022310 NAD/GMP synthase PF555_14830 IPR000132 Nitrilase/cyanide hydratase, conserved site PF555_14830 IPR003694 NAD(+) synthetase PF555_14830 IPR014445 Glutamine-dependent NAD(+) synthetase PF555_14830 IPR036526 Carbon-nitrogen hydrolase superfamily PF555_14830 IPR003010 Carbon-nitrogen hydrolase PF555_14830 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold PF555_14845 IPR017938 Riboflavin synthase-like beta-barrel PF555_14845 IPR006058 2Fe-2S ferredoxin, iron-sulphur binding site PF555_14845 IPR001433 Oxidoreductase FAD/NAD(P)-binding PF555_14845 IPR039261 Ferredoxin-NADP reductase (FNR), nucleotide-binding domain PF555_14845 IPR017927 FAD-binding domain, ferredoxin reductase-type PF555_14845 IPR008333 Flavoprotein pyridine nucleotide cytochrome reductase-like, FAD-binding domain PF555_14845 IPR039003 Carnitine monooxygenase reductase subunit PF555_14845 IPR012675 Beta-grasp domain superfamily PF555_14845 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain PF555_14845 IPR036010 2Fe-2S ferredoxin-like superfamily PF555_14845 IPR000951 Phthalate dioxygenase reductase PF555_14850 IPR010102 Succinate semialdehyde dehydrogenase PF555_14850 IPR015590 Aldehyde dehydrogenase domain PF555_14850 IPR029510 Aldehyde dehydrogenase, glutamic acid active site PF555_14850 IPR016162 Aldehyde dehydrogenase, N-terminal PF555_14850 IPR016160 Aldehyde dehydrogenase, cysteine active site PF555_14850 IPR016163 Aldehyde dehydrogenase, C-terminal PF555_14850 IPR016161 Aldehyde/histidinol dehydrogenase PF555_14855 IPR015881 Aromatic-ring-hydroxylating dioxygenase, 2Fe-2S-binding site PF555_14855 IPR017941 Rieske [2Fe-2S] iron-sulphur domain PF555_14855 IPR039004 Carnitine monooxygenase oxygenase subunit PF555_14855 IPR036922 Rieske [2Fe-2S] iron-sulphur domain superfamily PF555_14855 IPR001663 Aromatic-ring-hydroxylating dioxygenase, alpha subunit PF555_14855 IPR015879 Aromatic-ring-hydroxylating dioxygenase, alpha subunit, C-terminal domain PF555_14860 IPR002168 Lipase, GDXG, putative histidine active site PF555_14860 IPR033140 Lipase, GDXG, putative serine active site PF555_14860 IPR029058 Alpha/Beta hydrolase fold PF555_14860 IPR013094 Alpha/beta hydrolase fold-3 PF555_14865 IPR000060 BCCT transporter family PF555_14870 IPR019818 Isocitrate/isopropylmalate dehydrogenase, conserved site PF555_14870 IPR024084 Isopropylmalate dehydrogenase-like domain PF555_14870 IPR011829 Tartrate dehydrogenase PF555_14875 IPR036390 Winged helix DNA-binding domain superfamily PF555_14875 IPR036388 Winged helix-like DNA-binding domain superfamily PF555_14875 IPR000847 Transcription regulator HTH, LysR PF555_14875 IPR005119 LysR, substrate-binding PF555_14895 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site PF555_14895 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain PF555_14900 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold PF555_14900 IPR001980 Phosphopantetheine adenylyltransferase PF555_14900 IPR004821 Cytidyltransferase-like domain PF555_14905 IPR000037 SsrA-binding protein PF555_14905 IPR020081 SsrA-binding protein, conserved site PF555_14905 IPR023620 Small protein B PF555_14910 IPR005025 NADPH-dependent FMN reductase-like PF555_14910 IPR029039 Flavoprotein-like superfamily PF555_14910 IPR008254 Flavodoxin/nitric oxide synthase PF555_14915 IPR011324 Cytotoxic necrotizing factor-like, catalytic PF555_14915 IPR038371 Multi-copper polyphenol oxidoreductase superfamily PF555_14915 IPR003730 Multi-copper polyphenol oxidoreductase PF555_14920 IPR002942 RNA-binding S4 domain PF555_14920 IPR036986 RNA-binding S4 domain superfamily PF555_14920 IPR006145 Pseudouridine synthase, RsuA/RluA PF555_14920 IPR006224 Pseudouridine synthase, RluC/RluD, conserved site PF555_14920 IPR006225 Pseudouridine synthase, RluC/RluD PF555_14920 IPR020103 Pseudouridine synthase, catalytic domain superfamily PF555_14925 IPR017689 Outer membrane protein assembly factor BamD PF555_14925 IPR039565 Outer membrane lipoprotein BamD-like PF555_14925 IPR011990 Tetratricopeptide-like helical domain superfamily PF555_14930 IPR034151 Bacterial DnaG primase, TOPRIM domain PF555_14930 IPR006171 TOPRIM domain PF555_14930 IPR002694 Zinc finger, CHC2-type PF555_14930 IPR030846 DNA primase DnaG, bacteria PF555_14930 IPR019475 DNA primase, DnaB-helicase binding domain PF555_14930 IPR013173 DNA primase DnaG, DnaB-binding domain PF555_14930 IPR006295 DNA primase, DnaG PF555_14930 IPR037068 DNA primase, catalytic core, N-terminal domain superfamily PF555_14930 IPR013264 DNA primase, catalytic core, N-terminal PF555_14930 IPR016136 DNA helicase DnaB, N-terminal/DNA primase DnaG, C-terminal PF555_14930 IPR036977 DNA Primase, CHC2-type zinc finger PF555_14935 IPR036343 Glutamyl-tRNA reductase, N-terminal domain superfamily PF555_14935 IPR036291 NAD(P)-binding domain superfamily PF555_14935 IPR006151 Quinate/shikimate 5-dehydrogenase/glutamyl-tRNA reductase PF555_14935 IPR000343 Tetrapyrrole biosynthesis, glutamyl-tRNA reductase PF555_14935 IPR015896 Tetrapyrrole biosynthesis, glutamyl-tRNA reductase, dimerisation domain PF555_14935 IPR036453 Glutamyl tRNA-reductase dimerization domain superfamily PF555_14935 IPR018214 Glutamyl-tRNA reductase, conserved site PF555_14935 IPR015895 Tetrapyrrole biosynthesis, glutamyl-tRNA reductase, N-terminal PF555_14945 IPR029046 Lipoprotein localisation LolA/LolB/LppX PF555_14945 IPR004565 Outer membrane lipoprotein LolB PF555_14950 IPR013750 GHMP kinase, C-terminal domain PF555_14950 IPR036554 GHMP kinase, C-terminal domain superfamily PF555_14950 IPR006204 GHMP kinase N-terminal domain PF555_14950 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup PF555_14950 IPR004424 4-diphosphocytidyl-2C-methyl-D-erythritol kinase PF555_14950 IPR020568 Ribosomal protein S5 domain 2-type fold PF555_14975 IPR000842 Phosphoribosyl pyrophosphate synthetase, conserved site PF555_14975 IPR029099 Ribose-phosphate pyrophosphokinase, N-terminal domain PF555_14975 IPR037515 Ribose-phosphate pyrophosphokinase, bacterial-type PF555_14975 IPR000836 Phosphoribosyltransferase domain PF555_14975 IPR029057 Phosphoribosyltransferase-like PF555_14975 IPR005946 Ribose-phosphate pyrophosphokinase PF555_14980 IPR029751 Ribosomal protein L25 PF555_14980 IPR020055 Ribosomal protein L25, short-form PF555_14980 IPR011035 Ribosomal protein L25/Gln-tRNA synthetase, anti-codon-binding domain superfamily PF555_14980 IPR020056 Ribosomal protein L25/Gln-tRNA synthetase, N-terminal PF555_14985 IPR001328 Peptidyl-tRNA hydrolase PF555_14985 IPR018171 Peptidyl-tRNA hydrolase, conserved site PF555_14985 IPR036416 Peptidyl-tRNA hydrolase superfamily PF555_14990 IPR003190 Aspartate decarboxylase PF555_14990 IPR009010 Aspartate decarboxylase-like domain superfamily PF555_15005 IPR017945 DHBP synthase RibB-like alpha/beta domain superfamily PF555_15005 IPR000422 3,4-dihydroxy-2-butanone 4-phosphate synthase, RibB PF555_15015 IPR013785 Aldolase-type TIM barrel PF555_15015 IPR016084 Haem oxygenase-like, multi-helical PF555_15015 IPR004399 Hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase PF555_15015 IPR013749 Pyridoxamine kinase/Phosphomethylpyrimidine kinase PF555_15015 IPR029056 Ribokinase-like PF555_15015 IPR004305 Thiaminase-2/PQQC PF555_15015 IPR036206 Thiamin phosphate synthase superfamily PF555_15015 IPR034291 Thiamine phosphate synthase PF555_15015 IPR022998 Thiamine phosphate synthase/TenI PF555_15020 IPR007055 BON domain PF555_15020 IPR018392 LysM domain PF555_15020 IPR036779 LysM domain superfamily PF555_15020 IPR014004 Transport-associated and nodulation domain, bacteria PF555_15025 IPR006162 Phosphopantetheine attachment site PF555_15025 IPR036736 ACP-like superfamily PF555_15025 IPR003231 Acyl carrier protein (ACP) PF555_15025 IPR009081 Phosphopantetheine binding ACP domain PF555_15030 IPR002347 Short-chain dehydrogenase/reductase SDR PF555_15030 IPR020904 Short-chain dehydrogenase/reductase, conserved site PF555_15030 IPR036291 NAD(P)-binding domain superfamily PF555_15030 IPR011284 3-oxoacyl-(acyl-carrier-protein) reductase PF555_15035 IPR024925 Malonyl CoA-acyl carrier protein transacylase PF555_15035 IPR014043 Acyl transferase PF555_15035 IPR004410 Malonyl CoA-acyl carrier protein transacylase, FabD-type PF555_15035 IPR016036 Malonyl-CoA ACP transacylase, ACP-binding PF555_15035 IPR001227 Acyl transferase domain superfamily PF555_15035 IPR016035 Acyl transferase/acyl hydrolase/lysophospholipase PF555_15040 IPR011332 Zinc-binding ribosomal protein PF555_15040 IPR002677 Ribosomal protein L32p PF555_15045 IPR003772 Large ribosomal RNA subunit accumulation protein YceD PF555_15045 IPR039255 Large ribosomal RNA subunit accumulation protein YceD, bacteria PF555_15050 IPR007411 Elongation factor P hydroxylase PF555_15055 IPR017945 DHBP synthase RibB-like alpha/beta domain superfamily PF555_15055 IPR006070 YrdC-like domain PF555_15060 IPR003768 Segregation and condensation protein A PF555_15065 IPR036390 Winged helix DNA-binding domain superfamily PF555_15065 IPR036388 Winged helix-like DNA-binding domain superfamily PF555_15065 IPR005234 Chromosome segregation/condensation protein ScpB PF555_15070 IPR006145 Pseudouridine synthase, RsuA/RluA PF555_15070 IPR018496 Pseudouridine synthase, RsuA/RluB/E/F, conserved site PF555_15070 IPR002942 RNA-binding S4 domain PF555_15070 IPR020103 Pseudouridine synthase, catalytic domain superfamily PF555_15070 IPR036986 RNA-binding S4 domain superfamily PF555_15070 IPR042092 Pseudouridine synthase, RsuA/RluB/E/F, catalytic domain PF555_15070 IPR000748 Pseudouridine synthase, RsuA/RluB/E/F PF555_15075 IPR004472 Dethiobiotin synthase BioD PF555_15075 IPR027417 P-loop containing nucleoside triphosphate hydrolase PF555_15080 IPR011814 Malonyl-[acyl-carrier protein] O-methyltransferase BioC PF555_15080 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase PF555_15085 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 PF555_15085 IPR001917 Aminotransferase, class-II, pyridoxal-phosphate binding site PF555_15085 IPR004839 Aminotransferase, class I/classII PF555_15085 IPR004723 8-amino-7-oxononanoate synthase, Archaea/Proteobacteria type PF555_15085 IPR015424 Pyridoxal phosphate-dependent transferase PF555_15085 IPR015421 Pyridoxal phosphate-dependent transferase, major domain PF555_15090 IPR013785 Aldolase-type TIM barrel PF555_15090 IPR007197 Radical SAM PF555_15090 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 PF555_15090 IPR015424 Pyridoxal phosphate-dependent transferase PF555_15090 IPR006638 Elp3/MiaB/NifB PF555_15090 IPR005815 Adenosylmethionine--8-amino-7-oxononanoate aminotransferase BioA PF555_15090 IPR010722 Biotin and thiamin synthesis-associated domain PF555_15090 IPR005814 Aminotransferase class-III PF555_15090 IPR015421 Pyridoxal phosphate-dependent transferase, major domain PF555_15090 IPR002684 Biotin synthase/Biotin biosynthesis bifunctional protein BioAB PF555_15095 IPR013216 Methyltransferase type 11 PF555_15095 IPR011814 Malonyl-[acyl-carrier protein] O-methyltransferase BioC PF555_15095 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase PF555_15095 IPR029058 Alpha/Beta hydrolase fold PF555_15095 IPR000073 Alpha/beta hydrolase fold-1 PF555_15100 IPR006379 HAD-superfamily hydrolase, subfamily IIB PF555_15100 IPR023214 HAD superfamily PF555_15100 IPR003337 Trehalose-phosphatase PF555_15100 IPR036412 HAD-like superfamily PF555_15105 IPR001830 Glycosyl transferase, family 20 PF555_15105 IPR012766 Alpha,alpha-trehalose-phosphate synthase PF555_15110 IPR011701 Major facilitator superfamily PF555_15110 IPR020846 Major facilitator superfamily domain PF555_15110 IPR036259 MFS transporter superfamily PF555_15115 IPR002024 Bacterioferritin PF555_15115 IPR012347 Ferritin-like PF555_15115 IPR009040 Ferritin-like diiron domain PF555_15115 IPR008331 Ferritin/DPS protein domain PF555_15115 IPR009078 Ferritin-like superfamily PF555_15120 IPR018239 NAD-dependent DNA ligase, active site PF555_15120 IPR041663 DisA/LigA, helix-hairpin-helix motif PF555_15120 IPR036420 BRCT domain superfamily PF555_15120 IPR001357 BRCT domain PF555_15120 IPR001679 NAD-dependent DNA ligase PF555_15120 IPR013839 NAD-dependent DNA ligase, adenylation PF555_15120 IPR013840 NAD-dependent DNA ligase, N-terminal PF555_15120 IPR003583 Helix-hairpin-helix DNA-binding motif, class 1 PF555_15120 IPR012340 Nucleic acid-binding, OB-fold PF555_15120 IPR004150 NAD-dependent DNA ligase, OB-fold PF555_15120 IPR010994 RuvA domain 2-like PF555_15120 IPR004149 Zinc-finger, NAD-dependent DNA ligase C4-type PF555_15120 IPR033136 NAD-dependent DNA ligase, conserved site PF555_15130 IPR011890 Structural maintenance of chromosomes protein, prokaryotic PF555_15130 IPR036277 SMCs flexible hinge superfamily PF555_15130 IPR010935 SMCs flexible hinge PF555_15130 IPR003395 RecF/RecN/SMC, N-terminal PF555_15130 IPR027417 P-loop containing nucleoside triphosphate hydrolase PF555_15130 IPR024704 Structural maintenance of chromosomes protein PF555_15140 IPR002781 Transmembrane protein TauE-like PF555_15150 IPR004619 Type III pantothenate kinase PF555_15155 IPR003593 AAA+ ATPase domain PF555_15155 IPR027417 P-loop containing nucleoside triphosphate hydrolase PF555_15155 IPR036891 Signal recognition particle, SRP54 subunit, M-domain superfamily PF555_15155 IPR013822 Signal recognition particle SRP54, helical bundle PF555_15155 IPR004125 Signal recognition particle, SRP54 subunit, M-domain PF555_15155 IPR004780 Signal recognition particle protein PF555_15155 IPR022941 Signal recognition particle, SRP54 subunit PF555_15155 IPR000897 Signal recognition particle, SRP54 subunit, GTPase domain PF555_15155 IPR042101 Signal recognition particle SRP54, N-terminal domain superfamily PF555_15165 IPR018517 tRNA-dihydrouridine synthase, conserved site PF555_15165 IPR001269 tRNA-dihydrouridine synthase PF555_15165 IPR035587 DUS-like, FMN-binding domain PF555_15165 IPR032886 tRNA-dihydrouridine(16) synthase PF555_15165 IPR013785 Aldolase-type TIM barrel PF555_15165 IPR042270 tRNA-dihydrouridine(16) synthase, C-terminal PF555_15195 IPR011962 dCTP deaminase PF555_15195 IPR029054 dUTPase-like PF555_15195 IPR036157 dUTPase-like superfamily PF555_15195 IPR033704 dUTPase, trimeric PF555_15210 IPR010049 MTA/SAH nucleosidase PF555_15210 IPR000845 Nucleoside phosphorylase domain PF555_15210 IPR035994 Nucleoside phosphorylase superfamily PF555_15215 IPR033756 Flagellum site-determining protein YlxH/ Fe-S cluster assembling factor NBP35 PF555_15215 IPR027417 P-loop containing nucleoside triphosphate hydrolase PF555_15215 IPR034904 Fe-S cluster assembly domain superfamily PF555_15215 IPR019591 Mrp/NBP35 ATP-binding protein PF555_15215 IPR000808 Mrp, conserved site PF555_15225 IPR012340 Nucleic acid-binding, OB-fold PF555_15225 IPR009080 Aminoacyl-tRNA synthetase, class Ia, anticodon-binding PF555_15225 IPR002547 tRNA-binding domain PF555_15225 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold PF555_15225 IPR029038 Methionyl-tRNA synthetase, Zn-domain PF555_15225 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site PF555_15225 IPR015413 Methionyl/Leucyl tRNA synthetase PF555_15225 IPR014758 Methionyl-tRNA synthetase PF555_15225 IPR023458 Methionine-tRNA ligase, type 1 PF555_15225 IPR004495 Methionyl-tRNA synthetase, beta subunit, C-terminal PF555_15225 IPR041872 Methionyl-tRNA synthetase, anticodon-binding domain PF555_15225 IPR033911 Methioninyl-tRNA synthetase core domain PF555_15250 IPR039562 Membrane fusion protein, biotin-lipoyl like domain PF555_15255 IPR036052 Tryptophan synthase beta subunit-like PLP-dependent enzyme PF555_15255 IPR005966 D-cysteine desulfhydrase PF555_15255 IPR001926 Pyridoxal-phosphate dependent enzyme PF555_15255 IPR027278 1-aminocyclopropane-1-carboxylate deaminase/D-cysteine desulfhydrase PF555_15260 IPR004792 3-Dehydro-bile acid delta(4,6)-reductase-like PF555_15260 IPR036188 FAD/NAD(P)-binding domain superfamily PF555_15260 IPR023166 HI0933-like insert domain superfamily PF555_15270 IPR008910 Conserved TM helix PF555_15285 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase PF555_15285 IPR033892 Ferredoxin--NADP reductase, bacteria PF555_15285 IPR039261 Ferredoxin-NADP reductase (FNR), nucleotide-binding domain PF555_15285 IPR001433 Oxidoreductase FAD/NAD(P)-binding PF555_15285 IPR017938 Riboflavin synthase-like beta-barrel PF555_15285 IPR017927 FAD-binding domain, ferredoxin reductase-type PF555_15285 IPR008333 Flavoprotein pyridine nucleotide cytochrome reductase-like, FAD-binding domain PF555_15290 IPR005119 LysR, substrate-binding PF555_15290 IPR000847 Transcription regulator HTH, LysR PF555_15290 IPR036388 Winged helix-like DNA-binding domain superfamily PF555_15290 IPR036390 Winged helix DNA-binding domain superfamily PF555_15300 IPR019844 Cold-shock (CSD) domain PF555_15300 IPR002059 Cold-shock protein, DNA-binding PF555_15300 IPR012156 Cold shock, CspA PF555_15300 IPR011129 Cold shock domain PF555_15300 IPR012340 Nucleic acid-binding, OB-fold PF555_15305 IPR000836 Phosphoribosyltransferase domain PF555_15305 IPR005765 Uracil phosphoribosyl transferase PF555_15305 IPR034332 Uracil phosphoribosyltransferase, bacterial-type PF555_15305 IPR029057 Phosphoribosyltransferase-like PF555_15310 IPR001750 NADH:quinone oxidoreductase/Mrp antiporter, membrane subunit PF555_15310 IPR010096 NAD(P)H-quinone oxidoreductase, subunit N/subunit 2 PF555_15315 IPR001750 NADH:quinone oxidoreductase/Mrp antiporter, membrane subunit PF555_15315 IPR003918 NADH:ubiquinone oxidoreductase PF555_15315 IPR010227 NADH-quinone oxidoreductase, chain M/4 PF555_15320 IPR018393 NADH-plastoquinone oxidoreductase, chain 5 subgroup PF555_15320 IPR001750 NADH:quinone oxidoreductase/Mrp antiporter, membrane subunit PF555_15320 IPR001516 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminal PF555_15320 IPR003945 NADH-plastoquinone oxidoreductase, chain 5 PF555_15325 IPR039428 NADH-ubiquinone oxidoreductase chain 4L/Mnh complex subunit C1-like PF555_15325 IPR001133 NADH-ubiquinone oxidoreductase chain 4L/K PF555_15330 IPR001457 NADH:ubiquinone/plastoquinone oxidoreductase, chain 6 PF555_15330 IPR042106 NADH-ubiquinone/plastoquinone oxidoreductase chain 6, subunit NuoJ PF555_15335 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain PF555_15335 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site PF555_15335 IPR010226 NADH-quinone oxidoreductase, chain I PF555_15340 IPR018086 NADH:ubiquinone oxidoreductase, subunit 1, conserved site PF555_15340 IPR001694 NADH:ubiquinone oxidoreductase, subunit 1/F420H2 oxidoreductase subunit H PF555_15345 IPR019574 NADH:ubiquinone oxidoreductase, subunit G, iron-sulphur binding PF555_15345 IPR036010 2Fe-2S ferredoxin-like superfamily PF555_15345 IPR000283 NADH:ubiquinone oxidoreductase, 75kDa subunit, conserved site PF555_15345 IPR006963 Molybdopterin oxidoreductase, 4Fe-4S domain PF555_15345 IPR006656 Molybdopterin oxidoreductase PF555_15345 IPR009010 Aspartate decarboxylase-like domain superfamily PF555_15345 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain PF555_15345 IPR010228 NADH:ubiquinone oxidoreductase, subunit G PF555_15350 IPR001949 NADH:ubiquinone oxidoreductase, 51kDa subunit, conserved site PF555_15350 IPR011537 NADH ubiquinone oxidoreductase, F subunit PF555_15350 IPR011538 NADH-ubiquinone oxidoreductase 51kDa subunit, FMN-binding domain PF555_15350 IPR037225 NADH-ubiquinone oxidoreductase 51kDa subunit, FMN-binding domain superfamily PF555_15350 IPR019575 NADH-ubiquinone oxidoreductase 51kDa subunit, iron-sulphur binding domain PF555_15350 IPR019554 Soluble ligand binding domain PF555_15350 IPR037207 NADH-ubiquinone oxidoreductase 51kDa subunit, iron-sulphur binding domain superfamily PF555_15355 IPR036249 Thioredoxin-like superfamily PF555_15355 IPR041921 NADH-quinone oxidoreductase subunit E, N-terminal PF555_15355 IPR042128 NuoE domain PF555_15355 IPR002023 NADH-quinone oxidoreductase subunit E-like PF555_15360 IPR001135 NADH-quinone oxidoreductase, subunit D PF555_15360 IPR023062 NADH dehydrogenase, subunit CD PF555_15360 IPR022885 NAD(P)H-quinone oxidoreductase subunit D/H PF555_15360 IPR020396 NADH:ubiquinone oxidoreductase, 30kDa subunit, conserved site PF555_15360 IPR029014 [NiFe]-hydrogenase, large subunit PF555_15360 IPR001268 NADH:ubiquinone oxidoreductase, 30kDa subunit PF555_15360 IPR037232 NADH:ubiquinone oxidoreductase, 30kDa subunit superfamily PF555_15360 IPR038290 NADH-quinone oxidoreductase, subunit D superfamily PF555_15360 IPR014029 NADH:ubiquinone oxidoreductase, 49kDa subunit, conserved site PF555_15360 IPR010218 NADH dehydrogenase, subunit C PF555_15365 IPR006137 NADH:ubiquinone oxidoreductase-like, 20kDa subunit PF555_15365 IPR006138 NADH-ubiquinone oxidoreductase, 20 Kd subunit PF555_15370 IPR023043 NAD(P)H-quinone oxidoreductase subunit 3, bacterial/plastid PF555_15370 IPR000440 NADH:ubiquinone/plastoquinone oxidoreductase, chain 3 PF555_15370 IPR038430 NADH:ubiquinone oxidoreductase, subunit 3 superfamily PF555_15375 IPR000160 GGDEF domain PF555_15375 IPR033424 Membrane-associated sensor domain PF555_15375 IPR029787 Nucleotide cyclase PF555_15385 IPR036890 Histidine kinase/HSP90-like ATPase superfamily PF555_15385 IPR003660 HAMP domain PF555_15385 IPR004358 Signal transduction histidine kinase-related protein, C-terminal PF555_15385 IPR003594 Histidine kinase/HSP90-like ATPase PF555_15385 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain PF555_15385 IPR005467 Histidine kinase domain PF555_15385 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily PF555_15390 IPR011006 CheY-like superfamily PF555_15390 IPR001867 OmpR/PhoB-type DNA-binding domain PF555_15390 IPR016032 Signal transduction response regulator, C-terminal effector PF555_15390 IPR001789 Signal transduction response regulator, receiver domain PF555_15390 IPR036388 Winged helix-like DNA-binding domain superfamily PF555_15390 IPR039420 Transcriptional regulatory protein WalR-like PF555_15400 IPR005144 ATP-cone domain PF555_15400 IPR013346 Ribonucleotide reductase, class I , alpha subunit PF555_15400 IPR000788 Ribonucleotide reductase large subunit, C-terminal PF555_15400 IPR013509 Ribonucleotide reductase large subunit, N-terminal PF555_15400 IPR008926 Ribonucleotide reductase R1 subunit, N-terminal PF555_15400 IPR039718 Ribonucleoside-diphosphate reductase large subunit PF555_15410 IPR033909 Ribonucleotide reductase small subunit PF555_15410 IPR012348 Ribonucleotide reductase-like PF555_15410 IPR009078 Ferritin-like superfamily PF555_15410 IPR000358 Ribonucleotide reductase small subunit family PF555_15425 IPR031409 Darcynin PF555_15460 IPR002563 Flavin reductase like domain PF555_15460 IPR019917 FMN reductase (NADH) RutF PF555_15460 IPR012349 FMN-binding split barrel PF555_15465 IPR013215 Cobalamin-independent methionine synthase MetE, N-terminal PF555_15465 IPR006276 Cobalamin-independent methionine synthase PF555_15465 IPR002629 Cobalamin-independent methionine synthase MetE, C-terminal/archaeal PF555_15465 IPR038071 UROD/MetE-like superfamily PF555_15475 IPR005119 LysR, substrate-binding PF555_15475 IPR036388 Winged helix-like DNA-binding domain superfamily PF555_15475 IPR000847 Transcription regulator HTH, LysR PF555_15475 IPR036390 Winged helix DNA-binding domain superfamily PF555_15480 IPR001123 Amino acid exporter protein, LeuE-type PF555_15485 IPR000847 Transcription regulator HTH, LysR PF555_15485 IPR036388 Winged helix-like DNA-binding domain superfamily PF555_15485 IPR005119 LysR, substrate-binding PF555_15485 IPR036390 Winged helix DNA-binding domain superfamily PF555_15490 IPR036259 MFS transporter superfamily PF555_15490 IPR005829 Sugar transporter, conserved site PF555_15490 IPR011701 Major facilitator superfamily PF555_15490 IPR020846 Major facilitator superfamily domain PF555_15490 IPR004736 MFS transporter, metabolite:H symporter PF555_15500 IPR005119 LysR, substrate-binding PF555_15500 IPR036388 Winged helix-like DNA-binding domain superfamily PF555_15500 IPR000847 Transcription regulator HTH, LysR PF555_15500 IPR036390 Winged helix DNA-binding domain superfamily PF555_15505 IPR012286 Tetrahaem cytochrome domain PF555_15505 IPR027477 Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain superfamily PF555_15505 IPR036188 FAD/NAD(P)-binding domain superfamily PF555_15505 IPR011031 Multihaem cytochrome PF555_15505 IPR003953 FAD-dependent oxidoreductase 2, FAD binding domain PF555_15505 IPR010960 Flavocytochrome c PF555_15505 IPR036280 Multiheme cytochrome superfamily PF555_15510 IPR012830 Citrate utilization protein B PF555_15510 IPR036197 NarG-like superfamily PF555_15520 IPR023772 DNA-binding HTH domain, TetR-type, conserved site PF555_15520 IPR009057 Homeobox-like domain superfamily PF555_15520 IPR041490 HTH-type transcriptional repressor KstR2, C-terminal PF555_15520 IPR036271 Tetracyclin repressor-like, C-terminal domain superfamily PF555_15520 IPR001647 DNA-binding HTH domain, TetR-type PF555_15525 IPR023606 CoA-transferase family III domain superfamily PF555_15525 IPR003673 CoA-transferase family III PF555_15530 IPR005829 Sugar transporter, conserved site PF555_15530 IPR036259 MFS transporter superfamily PF555_15530 IPR020846 Major facilitator superfamily domain PF555_15530 IPR011701 Major facilitator superfamily PF555_15530 IPR004746 Major facilitator superfamily, aromatic acid:H+ symporter family PF555_15535 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily PF555_15535 IPR037069 Acyl-CoA dehydrogenase/oxidase, N-terminal domain superfamily PF555_15535 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal PF555_15535 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal PF555_15535 IPR036250 Acyl-CoA dehydrogenase-like, C-terminal PF555_15535 IPR006091 Acyl-CoA oxidase/dehydrogenase, central domain PF555_15535 IPR006089 Acyl-CoA dehydrogenase, conserved site PF555_15540 IPR005119 LysR, substrate-binding PF555_15540 IPR036390 Winged helix DNA-binding domain superfamily PF555_15540 IPR036388 Winged helix-like DNA-binding domain superfamily PF555_15540 IPR000847 Transcription regulator HTH, LysR PF555_15545 IPR013149 Alcohol dehydrogenase, C-terminal PF555_15545 IPR013154 Alcohol dehydrogenase, N-terminal PF555_15545 IPR002328 Alcohol dehydrogenase, zinc-type, conserved site PF555_15545 IPR011032 GroES-like superfamily PF555_15545 IPR036291 NAD(P)-binding domain superfamily PF555_15545 IPR020843 Polyketide synthase, enoylreductase domain PF555_15550 IPR006650 Adenosine/AMP deaminase active site PF555_15550 IPR001365 Adenosine/AMP deaminase domain PF555_15550 IPR028893 Adenosine deaminase PF555_15550 IPR006330 Adenosine/adenine deaminase PF555_15550 IPR032466 Metal-dependent hydrolase PF555_15575 IPR003473 Quinolinate synthetase A PF555_15575 IPR036094 Quinolinate synthetase A superfamily PF555_15575 IPR023513 Quinolinate synthase A, type 1 PF555_15580 IPR042195 ArgJ beta chain, C-terminal domain PF555_15580 IPR002813 Arginine biosynthesis protein ArgJ PF555_15580 IPR016117 ArgJ-like domain superfamily PF555_15585 IPR036217 Methylated DNA-protein cysteine methyltransferase, DNA binding domain PF555_15585 IPR008332 Methylguanine DNA methyltransferase, ribonuclease-like domain PF555_15585 IPR023546 Methylated-DNA--protein-cysteine methyltransferase PF555_15585 IPR036631 Methylated DNA-protein cysteine methyltransferase domain superfamily PF555_15585 IPR036388 Winged helix-like DNA-binding domain superfamily PF555_15585 IPR014048 Methylated-DNA-[protein]-cysteine S-methyltransferase, DNA binding PF555_15585 IPR001497 Methylated-DNA-[protein]-cysteine S-methyltransferase, active site PF555_15590 IPR000390 Small multidrug resistance protein family PF555_15605 IPR011706 Multicopper oxidase, type 2 PF555_15605 IPR019546 Twin-arginine translocation pathway, signal sequence, bacterial/archaeal PF555_15605 IPR006311 Twin-arginine translocation pathway, signal sequence PF555_15605 IPR034279 Copper resistance protein, third cupredoxin domain PF555_15605 IPR011707 Multicopper oxidase, type 3 PF555_15605 IPR034284 Copper resistance protein, first cupredoxin domain PF555_15605 IPR034282 Copper resistance protein CopA, second cupredoxin domain PF555_15605 IPR002355 Multicopper oxidase, copper-binding site PF555_15605 IPR033138 Multicopper oxidases, conserved site PF555_15605 IPR006376 Copper-resistance protein CopA PF555_15605 IPR001117 Multicopper oxidase, type 1 PF555_15605 IPR008972 Cupredoxin PF555_15615 IPR000150 Cof family PF555_15615 IPR036412 HAD-like superfamily PF555_15615 IPR006379 HAD-superfamily hydrolase, subfamily IIB PF555_15615 IPR023214 HAD superfamily PF555_15620 IPR000056 Ribulose-phosphate 3-epimerase-like PF555_15620 IPR026019 Ribulose-phosphate 3-epimerase PF555_15620 IPR013785 Aldolase-type TIM barrel PF555_15620 IPR011060 Ribulose-phosphate binding barrel PF555_15630 IPR014186 S-formylglutathione hydrolase PF555_15630 IPR000801 Putative esterase PF555_15630 IPR029058 Alpha/Beta hydrolase fold PF555_15640 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase PF555_15640 IPR007536 Ribosomal RNA small subunit methyltransferase J PF555_15645 IPR022496 tRNA threonylcarbamoyl adenosine modification protein TsaB PF555_15645 IPR000905 Gcp-like domain PF555_15650 IPR011004 Trimeric LpxA-like superfamily PF555_15650 IPR001451 Hexapeptide repeat PF555_15655 IPR015797 NUDIX hydrolase-like domain superfamily PF555_15655 IPR000086 NUDIX hydrolase domain PF555_15655 IPR000059 NUDIX hydrolase, NudL, conserved site PF555_15655 IPR023735 Uncharacterised nudix hydrolase NudL PF555_15675 IPR004291 Transposase, IS66 PF555_15675 IPR024463 Transposase TnpC, homeodomain PF555_15675 IPR024474 Zinc-finger binding domain of transposase IS66 PF555_15675 IPR039552 Transposase IS66, C-terminal PF555_15685 IPR009057 Homeobox-like domain superfamily PF555_15715 IPR005802 Aminodeoxychorismate synthase, component I PF555_15715 IPR005801 ADC synthase PF555_15715 IPR019999 Anthranilate synthase component I-like PF555_15715 IPR006805 Anthranilate synthase component I, N-terminal PF555_15715 IPR015890 Chorismate-utilising enzyme, C-terminal PF555_15720 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 PF555_15720 IPR004839 Aminotransferase, class I/classII PF555_15720 IPR005861 Histidinol-phosphate aminotransferase family PF555_15720 IPR015424 Pyridoxal phosphate-dependent transferase PF555_15720 IPR015421 Pyridoxal phosphate-dependent transferase, major domain PF555_15725 IPR012131 Histidinol dehydrogenase PF555_15725 IPR022695 Histidinol dehydrogenase, monofunctional PF555_15725 IPR016161 Aldehyde/histidinol dehydrogenase PF555_15725 IPR001692 Histidinol dehydrogenase, conserved site PF555_15730 IPR024893 ATP phosphoribosyltransferase HisG, short form PF555_15730 IPR001348 ATP phosphoribosyltransferase HisG PF555_15730 IPR018198 ATP phosphoribosyltransferase, conserved site PF555_15730 IPR013820 ATP phosphoribosyltransferase, catalytic domain PF555_15735 IPR002110 Ankyrin repeat PF555_15735 IPR001986 Enolpyruvate transferase domain PF555_15735 IPR036968 Enolpyruvate transferase domain superfamily PF555_15735 IPR013792 RNA 3'-terminal phosphate cyclase/enolpyruvate transferase, alpha/beta PF555_15735 IPR005750 UDP-N-acetylglucosamine 1-carboxyvinyltransferase PF555_15735 IPR020683 Ankyrin repeat-containing domain PF555_15740 IPR002634 BolA protein PF555_15740 IPR036065 BolA-like superfamily PF555_15745 IPR003489 Ribosome hibernation promoting factor/RaiA PF555_15745 IPR036567 Ribosome hibernation promotion factor-like PF555_15750 IPR000394 RNA polymerase sigma factor 54 PF555_15750 IPR007046 RNA polymerase sigma factor 54, core-binding domain PF555_15750 IPR007634 RNA polymerase sigma factor 54, DNA-binding PF555_15750 IPR038709 RNA polymerase sigma-54 factor, core-binding domain superfamily PF555_15795 IPR003010 Carbon-nitrogen hydrolase PF555_15795 IPR036526 Carbon-nitrogen hydrolase superfamily PF555_15795 IPR001110 Uncharacterised protein family UPF0012, conserved site PF555_15805 IPR036390 Winged helix DNA-binding domain superfamily PF555_15805 IPR000835 MarR-type HTH domain PF555_15805 IPR036388 Winged helix-like DNA-binding domain superfamily PF555_15810 IPR036102 OsmC/Ohr superfamily PF555_15810 IPR019953 Organic hydroperoxide resistance protein famiy PF555_15810 IPR003718 OsmC/Ohr family PF555_15810 IPR015946 K homology domain-like, alpha/beta PF555_15815 IPR027417 P-loop containing nucleoside triphosphate hydrolase PF555_15815 IPR001482 Type II/IV secretion system protein PF555_15815 IPR037257 General secretory system II, protein E, N-terminal superfamily PF555_15815 IPR013369 Type II secretion system GspE PF555_15815 IPR042181 Type II secretion system, protein E, N-terminal PF555_15835 IPR018320 DNA polymerase 1 PF555_15835 IPR001098 DNA-directed DNA polymerase, family A, palm domain PF555_15835 IPR020045 DNA polymerase I-like, H3TH domain PF555_15835 IPR019760 DNA-directed DNA polymerase, family A, conserved site PF555_15835 IPR002298 DNA polymerase A PF555_15835 IPR020046 5'-3' exonuclease, alpha-helical arch, N-terminal PF555_15835 IPR002562 3'-5' exonuclease domain PF555_15835 IPR008918 Helix-hairpin-helix motif, class 2 PF555_15835 IPR002421 5'-3' exonuclease, N-terminal PF555_15835 IPR029060 PIN-like domain superfamily PF555_15835 IPR036279 5'-3' exonuclease, C-terminal domain superfamily PF555_15835 IPR036397 Ribonuclease H superfamily PF555_15835 IPR012337 Ribonuclease H-like superfamily PF555_15840 IPR003425 CCB3/YggT PF555_15845 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily PF555_15845 IPR036291 NAD(P)-binding domain superfamily PF555_15845 IPR028939 Pyrroline-5-carboxylate reductase, catalytic, N-terminal PF555_15845 IPR029036 Pyrroline-5-carboxylate reductase, dimerisation domain PF555_15845 IPR000304 Pyrroline-5-carboxylate reductase PF555_15850 IPR015262 tRNA(Ile)-lysidine synthase , substrate-binding domain PF555_15850 IPR012796 Lysidine-tRNA(Ile) synthetase, C-terminal PF555_15850 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold PF555_15850 IPR011063 tRNA(Ile)-lysidine/2-thiocytidine synthase, N-terminal PF555_15850 IPR012094 tRNA(Ile)-lysidine synthase PF555_15850 IPR012795 tRNA(Ile)-lysidine synthase, N-terminal PF555_15855 IPR029045 ClpP/crotonase-like domain superfamily PF555_15855 IPR011763 Acetyl-coenzyme A carboxyltransferase, C-terminal PF555_15855 IPR001095 Acetyl-CoA carboxylase, alpha subunit PF555_15860 IPR003695 Ppx/GppA phosphatase PF555_15860 IPR030673 Pyrophosphatase, GppA/Ppx-type PF555_15860 IPR022371 Exopolyphosphatase PF555_15865 IPR013766 Thioredoxin domain PF555_15865 IPR017937 Thioredoxin, conserved site PF555_15865 IPR036249 Thioredoxin-like superfamily PF555_15865 IPR005746 Thioredoxin PF555_15870 IPR004665 Transcription termination factor Rho PF555_15870 IPR011113 Rho termination factor, RNA-binding domain PF555_15870 IPR036269 Rho termination factor, N-terminal domain superfamily PF555_15870 IPR011112 Rho termination factor, N-terminal PF555_15870 IPR012340 Nucleic acid-binding, OB-fold PF555_15870 IPR003593 AAA+ ATPase domain PF555_15870 IPR000194 ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain PF555_15870 IPR041703 Transcription termination factor Rho, ATP binding domain PF555_15870 IPR027417 P-loop containing nucleoside triphosphate hydrolase PF555_15870 IPR011129 Cold shock domain PF555_15885 IPR000119 Histone-like DNA-binding protein PF555_15885 IPR020816 Histone-like DNA-binding protein, conserved site PF555_15885 IPR005684 Integration host factor, alpha subunit PF555_15885 IPR010992 Integration host factor (IHF)-like DNA-binding domain superfamily PF555_15890 IPR005146 B3/B4 tRNA-binding domain PF555_15890 IPR009061 Putative DNA-binding domain superfamily PF555_15890 IPR005121 Ferrodoxin-fold anticodon-binding domain PF555_15890 IPR036690 Ferrodoxin-fold anticodon-binding domain superfamily PF555_15890 IPR012340 Nucleic acid-binding, OB-fold PF555_15890 IPR004532 Phenylalanine-tRNA ligase, class IIc, beta subunit PF555_15890 IPR020825 Phenylalanyl-tRNA synthetase, B3/B4 PF555_15890 IPR041616 Phenylalanyl tRNA synthetase beta chain, core domain PF555_15890 IPR002547 tRNA-binding domain PF555_15890 IPR033714 Phenylalanly tRNA synthetase, tRNA-binding-domain PF555_15890 IPR005147 tRNA synthetase, B5-domain PF555_15895 IPR010978 Class I and II aminoacyl-tRNA synthetase, tRNA-binding arm PF555_15895 IPR022911 Phenylalanine-tRNA ligase alpha chain 1, bacterial PF555_15895 IPR002319 Phenylalanyl-tRNA synthetase PF555_15895 IPR004529 Phenylalanyl-tRNA synthetase, class IIc, alpha subunit PF555_15895 IPR004188 Phenylalanine-tRNA ligase, class II, N-terminal PF555_15895 IPR006195 Aminoacyl-tRNA synthetase, class II PF555_15915 IPR005813 Ribosomal protein L20 PF555_15915 IPR035566 Ribosomal protein L20, C-terminal PF555_15920 IPR001706 Ribosomal protein L35, non-mitochondrial PF555_15920 IPR037229 Ribosomal protein L35 superfamily PF555_15920 IPR021137 Ribosomal protein L35 PF555_15920 IPR018265 Ribosomal protein L35, conserved site PF555_15930 IPR004751 Drug antiporter protein PF555_15930 IPR011701 Major facilitator superfamily PF555_15930 IPR020846 Major facilitator superfamily domain PF555_15930 IPR036259 MFS transporter superfamily PF555_15935 IPR032816 SNARE associated Golgi protein PF555_15940 IPR004046 Glutathione S-transferase, C-terminal PF555_15940 IPR036282 Glutathione S-transferase, C-terminal domain superfamily PF555_15940 IPR004045 Glutathione S-transferase, N-terminal PF555_15940 IPR010987 Glutathione S-transferase, C-terminal-like PF555_15940 IPR036249 Thioredoxin-like superfamily PF555_15945 IPR036787 Translation initiation factor 3 (IF-3), N-terminal domain superfamily PF555_15945 IPR001288 Translation initiation factor 3 PF555_15945 IPR019815 Translation initiation factor 3, C-terminal PF555_15945 IPR019814 Translation initiation factor 3, N-terminal PF555_15945 IPR036788 Translation initiation factor 3 (IF-3), C-terminal domain superfamily PF555_15950 IPR012947 Threonyl/alanyl tRNA synthetase, SAD PF555_15950 IPR033728 Threonine-tRNA ligase catalytic core domain PF555_15950 IPR018163 Threonyl/alanyl tRNA synthetase, class II-like, putative editing domain superfamily PF555_15950 IPR002320 Threonine-tRNA ligase, class IIa PF555_15950 IPR012676 TGS-like PF555_15950 IPR012675 Beta-grasp domain superfamily PF555_15950 IPR036621 Anticodon-binding domain superfamily PF555_15950 IPR004154 Anticodon-binding PF555_15950 IPR006195 Aminoacyl-tRNA synthetase, class II PF555_15950 IPR002314 Aminoacyl-tRNA synthetase, class II (G/ P/ S/T) PF555_15950 IPR004095 TGS PF555_15955 IPR042099 AMP-dependent synthetase-like superfamily PF555_15955 IPR025110 AMP-binding enzyme, C-terminal domain PF555_15955 IPR020845 AMP-binding, conserved site PF555_15955 IPR000873 AMP-dependent synthetase/ligase PF555_15960 IPR023153 PSPTO4464-like domain superfamily PF555_15960 IPR006839 Ribosome-associated, YjgA PF555_15965 IPR000032 Phosphocarrier protein HPr-like PF555_15965 IPR035895 HPr-like superfamily PF555_15965 IPR001020 Phosphotransferase system, HPr histidine phosphorylation site PF555_15965 IPR002114 Phosphotransferase system, HPr serine phosphorylation site PF555_15970 IPR027417 P-loop containing nucleoside triphosphate hydrolase PF555_15970 IPR005337 RapZ-like family PF555_15975 IPR004821 Cytidyltransferase-like domain PF555_15975 IPR003721 Pantoate-beta-alanine ligase PF555_15975 IPR042176 Pantoate-beta-alanine ligase, C-terminal domain PF555_15975 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold PF555_15980 IPR003700 Ketopantoate hydroxymethyltransferase PF555_15980 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain superfamily PF555_15980 IPR040442 Pyruvate kinase-like domain superfamily PF555_15985 IPR000550 7,8-Dihydro-6-hydroxymethylpterin-pyrophosphokinase, HPPK PF555_15985 IPR035907 7,8-Dihydro-6-hydroxymethylpterin-pyrophosphokinase HPPK superfamily PF555_15990 IPR002646 Poly A polymerase, head domain PF555_15990 IPR010206 Poly(A) polymerase I PF555_15990 IPR025866 Polymerase A arginine-rich C-terminal domain PF555_15990 IPR032828 tRNA nucleotidyltransferase/poly(A) polymerase, RNA and SrmB- binding domain PF555_15995 IPR004509 Competence protein ComEA, helix-hairpin-helix domain PF555_15995 IPR010994 RuvA domain 2-like PF555_16000 IPR011551 NTP pyrophosphohydrolase MazG PF555_16000 IPR004518 NTP pyrophosphohydrolase MazG, putative catalytic core PF555_16005 IPR002347 Short-chain dehydrogenase/reductase SDR PF555_16005 IPR020904 Short-chain dehydrogenase/reductase, conserved site PF555_16005 IPR036291 NAD(P)-binding domain superfamily PF555_16010 IPR002912 ACT domain PF555_16010 IPR012675 Beta-grasp domain superfamily PF555_16010 IPR003607 HD/PDEase domain PF555_16010 IPR004811 RelA/SpoT family PF555_16010 IPR007685 RelA/SpoT PF555_16010 IPR004095 TGS PF555_16010 IPR012676 TGS-like PF555_16010 IPR033655 RelA, TGS domain PF555_16015 IPR002792 TRAM domain PF555_16015 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase PF555_16015 IPR012340 Nucleic acid-binding, OB-fold PF555_16015 IPR010280 (Uracil-5)-methyltransferase family PF555_16015 IPR001566 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD PF555_16015 IPR030390 RNA methyltransferase TrmA, active site PF555_16025 IPR036052 Tryptophan synthase beta subunit-like PLP-dependent enzyme PF555_16025 IPR001926 Pyridoxal-phosphate dependent enzyme PF555_16025 IPR005858 Cysteine synthase CysM PF555_16025 IPR005856 Cysteine synthase PF555_16025 IPR001216 Cysteine synthase/cystathionine beta-synthase, pyridoxal-phosphate attachment site PF555_16030 IPR001789 Signal transduction response regulator, receiver domain PF555_16030 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain PF555_16030 IPR004358 Signal transduction histidine kinase-related protein, C-terminal PF555_16030 IPR036641 HPT domain superfamily PF555_16030 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily PF555_16030 IPR019247 Histidine kinase BarA, N-terminal PF555_16030 IPR005467 Histidine kinase domain PF555_16030 IPR036890 Histidine kinase/HSP90-like ATPase superfamily PF555_16030 IPR003594 Histidine kinase/HSP90-like ATPase PF555_16030 IPR003660 HAMP domain PF555_16030 IPR011006 CheY-like superfamily PF555_16030 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain PF555_16035 IPR001753 Enoyl-CoA hydratase/isomerase PF555_16035 IPR018376 Enoyl-CoA hydratase/isomerase, conserved site PF555_16035 IPR029045 ClpP/crotonase-like domain superfamily PF555_16040 IPR029154 3-hydroxyisobutyrate dehydrogenase, NAD-binding domain PF555_16040 IPR036291 NAD(P)-binding domain superfamily PF555_16040 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily PF555_16040 IPR006115 6-phosphogluconate dehydrogenase, NADP-binding PF555_16040 IPR013328 6-phosphogluconate dehydrogenase, domain 2 PF555_16040 IPR002204 3-hydroxyisobutyrate dehydrogenase-related, conserved site PF555_16040 IPR015815 3-hydroxyisobutyrate dehydrogenase-related PF555_16045 IPR013022 Xylose isomerase-like, TIM barrel domain PF555_16045 IPR026040 Hydroxypyruvate isomerase-like PF555_16045 IPR036237 Xylose isomerase-like superfamily PF555_16050 IPR004394 Protein Iojap/ribosomal silencing factor RsfS PF555_16055 IPR002347 Short-chain dehydrogenase/reductase SDR PF555_16055 IPR036291 NAD(P)-binding domain superfamily PF555_16055 IPR005979 Light-dependent protochlorophyllide reductase PF555_16060 IPR029035 DHS-like NAD/FAD-binding domain superfamily PF555_16060 IPR012136 NADP transhydrogenase, beta subunit PF555_16060 IPR034300 NADP transhydrogenase beta-like domain PF555_16065 IPR024605 NAD(P) transhydrogenase, alpha subunit, C-terminal PF555_16070 IPR008143 Alanine dehydrogenase/pyridine nucleotide transhydrogenase, conserved site-2 PF555_16070 IPR008142 Alanine dehydrogenase/NAD(P) transhydrogenase, conserved site-1 PF555_16070 IPR007886 Alanine dehydrogenase/pyridine nucleotide transhydrogenase, N-terminal PF555_16070 IPR007698 Alanine dehydrogenase/pyridine nucleotide transhydrogenase, NAD(H)-binding domain PF555_16070 IPR036291 NAD(P)-binding domain superfamily PF555_16075 IPR000620 EamA domain PF555_16085 IPR036259 MFS transporter superfamily PF555_16085 IPR020846 Major facilitator superfamily domain PF555_16085 IPR011701 Major facilitator superfamily PF555_16090 IPR018517 tRNA-dihydrouridine synthase, conserved site PF555_16090 IPR001269 tRNA-dihydrouridine synthase PF555_16090 IPR035587 DUS-like, FMN-binding domain PF555_16090 IPR013785 Aldolase-type TIM barrel PF555_16090 IPR004653 tRNA-dihydrouridine(20/20a) synthase PF555_16100 IPR037411 HTH-type transcriptional regulator AlsR, PBP2 domain PF555_16100 IPR005119 LysR, substrate-binding PF555_16100 IPR000847 Transcription regulator HTH, LysR PF555_16100 IPR036388 Winged helix-like DNA-binding domain superfamily PF555_16100 IPR036390 Winged helix DNA-binding domain superfamily PF555_16110 IPR000594 THIF-type NAD/FAD binding fold PF555_16110 IPR035985 Ubiquitin-activating enzyme PF555_16115 IPR036008 Aconitase, iron-sulfur domain PF555_16115 IPR000573 Aconitase A/isopropylmalate dehydratase small subunit, swivel domain PF555_16115 IPR006249 Aconitase/Iron-responsive element-binding protein 2 PF555_16115 IPR018136 Aconitase family, 4Fe-4S cluster binding site PF555_16115 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain PF555_16115 IPR015931 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha, subdomain 1/3 PF555_16115 IPR015928 Aconitase/3-isopropylmalate dehydratase, swivel PF555_16120 IPR018228 Deoxyribonuclease, TatD-related, conserved site PF555_16120 IPR015991 Uncharacterised hydrolase TatD-type PF555_16120 IPR032466 Metal-dependent hydrolase PF555_16120 IPR001130 TatD family PF555_16135 IPR041732 Peptide chain release factor 3, GTP-binding domain PF555_16135 IPR009000 Translation protein, beta-barrel domain superfamily PF555_16135 IPR000795 Transcription factor, GTP-binding domain PF555_16135 IPR005225 Small GTP-binding protein domain PF555_16135 IPR032090 Peptide chain release factor 3, C-terminal PF555_16135 IPR038467 Peptide chain release factor 3, C-terminal domain superfamily PF555_16135 IPR027417 P-loop containing nucleoside triphosphate hydrolase PF555_16135 IPR031157 Tr-type G domain, conserved site PF555_16135 IPR004161 Translation elongation factor EFTu-like, domain 2 PF555_16135 IPR035647 EF-G domain III/V-like PF555_16135 IPR004548 Peptide chain release factor 3 PF555_16160 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily PF555_16160 IPR013023 Ketol-acid reductoisomerase PF555_16160 IPR000506 Ketol-acid reductoisomerase, C-terminal PF555_16160 IPR013116 Ketol-acid reductoisomerase, N-terminal PF555_16160 IPR014359 Ketol-acid reductoisomerase, prokaryotic PF555_16160 IPR036291 NAD(P)-binding domain superfamily PF555_16165 IPR019455 Acetolactate synthase, small subunit, C-terminal PF555_16165 IPR039557 AHAS, ACT domain PF555_16165 IPR004789 Acetolactate synthase, small subunit PF555_16165 IPR027271 Acetolactate synthase/Transcription factor NikR, C-terminal PF555_16165 IPR002912 ACT domain PF555_16170 IPR011766 Thiamine pyrophosphate enzyme, C-terminal TPP-binding PF555_16170 IPR029035 DHS-like NAD/FAD-binding domain superfamily PF555_16170 IPR012001 Thiamine pyrophosphate enzyme, N-terminal TPP-binding domain PF555_16170 IPR000399 TPP-binding enzyme, conserved site PF555_16170 IPR029061 Thiamin diphosphate-binding fold PF555_16170 IPR012000 Thiamine pyrophosphate enzyme, central domain PF555_16170 IPR012846 Acetolactate synthase, large subunit, biosynthetic PF555_16170 IPR039368 Acetolactate synthase large subunit, TPP binding domain PF555_16180 IPR002300 Aminoacyl-tRNA synthetase, class Ia PF555_16180 IPR009008 Valyl/Leucyl/Isoleucyl-tRNA synthetase, editing domain PF555_16180 IPR009080 Aminoacyl-tRNA synthetase, class Ia, anticodon-binding PF555_16180 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold PF555_16180 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site PF555_16180 IPR013155 Methionyl/Valyl/Leucyl/Isoleucyl-tRNA synthetase, anticodon-binding PF555_16180 IPR025709 Leucyl-tRNA synthetase, editing domain PF555_16180 IPR002302 Leucine-tRNA ligase PF555_16180 IPR015413 Methionyl/Leucyl tRNA synthetase PF555_16195 IPR032317 RND efflux pump, membrane fusion protein, barrel-sandwich domain PF555_16195 IPR030190 Macrolide export protein MacA PF555_16195 IPR006143 RND efflux pump, membrane fusion protein PF555_16200 IPR025857 MacB-like periplasmic core domain PF555_16200 IPR017911 ABC transporter, macrolide export, ATP-binding domain PF555_16200 IPR027417 P-loop containing nucleoside triphosphate hydrolase PF555_16200 IPR003439 ABC transporter-like PF555_16200 IPR003838 ABC transporter permease protein domain PF555_16200 IPR003593 AAA+ ATPase domain PF555_16200 IPR017871 ABC transporter, conserved site PF555_16205 IPR010131 RND efflux system, outer membrane lipoprotein, NodT PF555_16205 IPR003423 Outer membrane efflux protein PF555_16210 IPR014358 Enoyl-[acyl-carrier-protein] reductase (NADH) PF555_16210 IPR036291 NAD(P)-binding domain superfamily PF555_16210 IPR002347 Short-chain dehydrogenase/reductase SDR PF555_16220 IPR013520 Exonuclease, RNase T/DNA polymerase III PF555_16220 IPR022894 Oligoribonuclease PF555_16220 IPR012337 Ribonuclease H-like superfamily PF555_16220 IPR036397 Ribonuclease H superfamily PF555_16225 IPR010914 RsgA GTPase domain PF555_16225 IPR004881 Ribosome biogenesis GTPase RsgA PF555_16225 IPR012340 Nucleic acid-binding, OB-fold PF555_16225 IPR030378 Circularly permuted (CP)-type guanine nucleotide-binding (G) domain PF555_16225 IPR027417 P-loop containing nucleoside triphosphate hydrolase PF555_16235 IPR036249 Thioredoxin-like superfamily PF555_16235 IPR011900 Glutaredoxin, GrxC PF555_16235 IPR011767 Glutaredoxin active site PF555_16235 IPR002109 Glutaredoxin PF555_16235 IPR014025 Glutaredoxin subgroup PF555_16240 IPR003708 Bacterial protein export chaperone SecB PF555_16240 IPR035958 SecB-like superfamily PF555_16250 IPR005225 Small GTP-binding protein domain PF555_16250 IPR027417 P-loop containing nucleoside triphosphate hydrolase PF555_16250 IPR015946 K homology domain-like, alpha/beta PF555_16250 IPR006073 GTP binding domain PF555_16250 IPR016484 GTP-binding protein EngA PF555_16250 IPR031166 EngA-type guanine nucleotide-binding (G) domain PF555_16250 IPR032859 GTPase Der, C-terminal KH-domain-like PF555_16255 IPR018391 Pyrrolo-quinoline quinone beta-propeller repeat PF555_16255 IPR002372 Pyrrolo-quinoline quinone repeat PF555_16255 IPR011047 Quinoprotein alcohol dehydrogenase-like superfamily PF555_16255 IPR015943 WD40/YVTN repeat-like-containing domain superfamily PF555_16255 IPR017687 Outer membrane protein assembly factor BamB PF555_16265 IPR004516 Histidine-tRNA ligase/ATP phosphoribosyltransferase regulatory subunit PF555_16265 IPR006195 Aminoacyl-tRNA synthetase, class II PF555_16265 IPR004154 Anticodon-binding PF555_16265 IPR036621 Anticodon-binding domain superfamily PF555_16265 IPR015807 Histidine-tRNA ligase PF555_16265 IPR041715 Class II Histidinyl-tRNA synthetase (HisRS)-like catalytic core domain PF555_16270 IPR011005 Dihydropteroate synthase-like PF555_16270 IPR004588 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase, bacterial-type PF555_16270 IPR016425 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase, bacterial PF555_16275 IPR001387 Cro/C1-type helix-turn-helix domain PF555_16275 IPR025194 Domain of unknown function DUF4115 PF555_16275 IPR010982 Lambda repressor-like, DNA-binding domain superfamily PF555_16280 IPR013360 Pilus biogenesis/stability type IV, PilW PF555_16280 IPR013026 Tetratricopeptide repeat-containing domain PF555_16280 IPR011990 Tetratricopeptide-like helical domain superfamily PF555_16280 IPR019734 Tetratricopeptide repeat PF555_16285 IPR004383 Ribosomal RNA large subunit methyltransferase RlmN/Cfr PF555_16285 IPR007197 Radical SAM PF555_16285 IPR040072 Methyltransferase (Class A) PF555_16285 IPR013785 Aldolase-type TIM barrel PF555_16285 IPR027492 Dual-specificity RNA methyltransferase RlmN PF555_16290 IPR034907 Nucleoside diphosphate kinase-like domain PF555_16290 IPR036850 Nucleoside diphosphate kinase-like domain superfamily PF555_16290 IPR001564 Nucleoside diphosphate kinase PF555_16290 IPR023005 Nucleoside diphosphate kinase, active site PF555_16295 IPR007479 ISC system FeS cluster assembly, IscX PF555_16295 IPR036762 IscX-like superfamily PF555_16300 IPR036938 Phosphatidic acid phosphatase type 2/haloperoxidase superfamily PF555_16300 IPR000326 Phosphatidic acid phosphatase type 2/haloperoxidase PF555_16305 IPR001296 Glycosyl transferase, family 1 PF555_16305 IPR028098 Glycosyltransferase subfamily 4-like, N-terminal domain PF555_16310 IPR040573 Tail specific protease, N-terminal domain PF555_16310 IPR005151 Tail specific protease PF555_16310 IPR020992 Tail specific protease, C-terminal PF555_16310 IPR036034 PDZ superfamily PF555_16310 IPR001478 PDZ domain PF555_16310 IPR029045 ClpP/crotonase-like domain superfamily PF555_16310 IPR004447 C-terminal-processing peptidase S41A PF555_16315 IPR022956 Beta-hexosaminidase, bacterial PF555_16315 IPR019800 Glycoside hydrolase, family 3, active site PF555_16315 IPR001764 Glycoside hydrolase, family 3, N-terminal PF555_16315 IPR036962 Glycoside hydrolase, family 3, N-terminal domain superfamily PF555_16315 IPR017853 Glycoside hydrolase superfamily PF555_16325 IPR029058 Alpha/Beta hydrolase fold PF555_16325 IPR000073 Alpha/beta hydrolase fold-1 PF555_16325 IPR000639 Epoxide hydrolase-like PF555_16325 IPR023791 2-hydroxy-6-oxononadienedioate/2-hydroxy-6-oxononatrienedioate hydrolase PF555_16330 IPR000965 GPR domain PF555_16330 IPR012134 Glutamate-5-semialdehyde dehydrogenase PF555_16330 IPR015590 Aldehyde dehydrogenase domain PF555_16330 IPR016162 Aldehyde dehydrogenase, N-terminal PF555_16330 IPR016163 Aldehyde dehydrogenase, C-terminal PF555_16330 IPR016161 Aldehyde/histidinol dehydrogenase PF555_16330 IPR020593 Gamma-glutamyl phosphate reductase GPR, conserved site PF555_16335 IPR016161 Aldehyde/histidinol dehydrogenase PF555_16335 IPR016163 Aldehyde dehydrogenase, C-terminal PF555_16335 IPR016160 Aldehyde dehydrogenase, cysteine active site PF555_16335 IPR016162 Aldehyde dehydrogenase, N-terminal PF555_16335 IPR015590 Aldehyde dehydrogenase domain PF555_16340 IPR027417 P-loop containing nucleoside triphosphate hydrolase PF555_16340 IPR031322 Shikimate kinase/gluconokinase PF555_16340 IPR006001 Carbohydrate kinase, thermoresistant glucokinase PF555_16345 IPR003474 Gluconate transporter PF555_16350 IPR031338 KDPG/KHG aldolase, active site 2 PF555_16350 IPR031337 KDPG/KHG aldolase, active site 1 PF555_16350 IPR013785 Aldolase-type TIM barrel PF555_16350 IPR000887 KDPG/KHG aldolase PF555_16355 IPR004786 6-phosphogluconate dehydratase PF555_16355 IPR037237 IlvD/EDD, N-terminal domain PF555_16355 IPR020558 Dihydroxy-acid/6-phosphogluconate dehydratase, conserved site PF555_16355 IPR042096 Dihydroxy-acid dehydratase, C-terminal PF555_16355 IPR000581 Dihydroxy-acid/6-phosphogluconate dehydratase PF555_16360 IPR000890 Aliphatic acid kinase, short-chain PF555_16360 IPR004372 Acetate/propionate kinase PF555_16360 IPR023865 Aliphatic acid kinase, short-chain, conserved site PF555_16365 IPR042113 Phosphate acetyltransferase, domain 1 PF555_16365 IPR010766 DRTGG PF555_16365 IPR016475 Phosphate acetyltransferase, bacteria PF555_16365 IPR027417 P-loop containing nucleoside triphosphate hydrolase PF555_16365 IPR004614 Phosphate acetyltransferase PF555_16365 IPR042112 Phosphate acetyltransferase, domain 2 PF555_16365 IPR002505 Phosphate acetyl/butaryl transferase PF555_16365 IPR028979 HPr(Ser) kinase/phosphorylase-like, N-terminal domain superfamily PF555_16370 IPR011167 Iron-dependent fumarate hydratase PF555_16370 IPR036660 Fe-S hydro-lyase, tartrate dehydratase beta-type, catalytic domain superfamily PF555_16370 IPR020557 Fumarate lyase, conserved site PF555_16370 IPR004647 Fe-S hydro-lyase, tartrate dehydratase beta-type, catalytic domain PF555_16370 IPR004646 Fe-S hydro-lyase, tartrate dehydratase alpha-type, catalytic domain PF555_16385 IPR004487 Clp protease, ATP-binding subunit ClpX PF555_16385 IPR038366 Zinc finger, ClpX C4-type superfamily PF555_16385 IPR010603 Zinc finger, ClpX C4-type PF555_16385 IPR019489 Clp ATPase, C-terminal PF555_16385 IPR003959 ATPase, AAA-type, core PF555_16385 IPR027417 P-loop containing nucleoside triphosphate hydrolase PF555_16385 IPR003593 AAA+ ATPase domain PF555_16390 IPR033135 ClpP, histidine active site PF555_16390 IPR001907 ATP-dependent Clp protease proteolytic subunit PF555_16390 IPR029045 ClpP/crotonase-like domain superfamily PF555_16390 IPR023562 Clp protease proteolytic subunit /Translocation-enhancing protein TepA PF555_16390 IPR018215 ClpP, Ser active site PF555_16395 IPR036611 Trigger factor ribosome-binding domain superfamily PF555_16395 IPR008881 Trigger factor, ribosome-binding, bacterial PF555_16395 IPR037041 Trigger factor, C-terminal domain superfamily PF555_16395 IPR008880 Trigger factor, C-terminal PF555_16395 IPR005215 Trigger factor PF555_16395 IPR027304 Trigger factor/SurA domain superfamily PF555_16395 IPR001179 FKBP-type peptidyl-prolyl cis-trans isomerase domain PF555_16400 IPR037066 TonB-dependent receptor, plug domain superfamily PF555_16400 IPR039423 TonB-dependent receptor-like PF555_16400 IPR036942 TonB-dependent receptor-like, beta-barrel domain superfamily PF555_16400 IPR010105 TonB-dependent siderophore receptor PF555_16400 IPR012910 TonB-dependent receptor, plug domain PF555_16400 IPR000531 TonB-dependent receptor-like, beta-barrel PF555_16400 IPR030148 Catecholate siderophore receptor Fiu PF555_16405 IPR006620 Prolyl 4-hydroxylase, alpha subunit PF555_16405 IPR005123 Oxoglutarate/iron-dependent dioxygenase PF555_16405 IPR041097 PKHD-type hydroxylase C-terminal domain PF555_16405 IPR023550 PKHD-type hydroxylase PF555_16410 IPR000891 Pyruvate carboxyltransferase PF555_16410 IPR039371 LeuA, N-terminal catalytic TIM barrel domain PF555_16410 IPR036230 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain superfamily PF555_16410 IPR005668 2-isopropylmalate synthase PF555_16410 IPR002034 Alpha-isopropylmalate/homocitrate synthase, conserved site PF555_16410 IPR013785 Aldolase-type TIM barrel PF555_16410 IPR013709 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain PF555_16415 IPR029058 Alpha/Beta hydrolase fold PF555_16415 IPR008220 Homoserine/serine acetyltransferase MetX-like PF555_16415 IPR000073 Alpha/beta hydrolase fold-1 PF555_16420 IPR029058 Alpha/Beta hydrolase fold PF555_16420 IPR000073 Alpha/beta hydrolase fold-1 PF555_16420 IPR008220 Homoserine/serine acetyltransferase MetX-like PF555_16420 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase PF555_16420 IPR010743 Methionine biosynthesis MetW PF555_16430 IPR029001 Inosine triphosphate pyrophosphatase-like PF555_16430 IPR002637 Ham1-like protein PF555_16430 IPR020922 dITP/XTP pyrophosphatase PF555_16440 IPR006312 Sec-independent protein translocase protein TatA/E PF555_16440 IPR003369 Sec-independent protein translocase protein TatA/B/E PF555_16445 IPR003369 Sec-independent protein translocase protein TatA/B/E PF555_16445 IPR018448 Twin-arginine translocation protein TatB PF555_16450 IPR019820 Sec-independent periplasmic protein translocase, conserved site PF555_16450 IPR002033 Sec-independent periplasmic protein translocase TatC PF555_16470 IPR001640 Phosphatidylglycerol--prolipoprotein diacylglyceryl transferase Lgt PF555_16485 IPR036926 Thymidylate synthase/dCMP hydroxymethylase superfamily PF555_16485 IPR023451 Thymidylate synthase/dCMP hydroxymethylase domain PF555_16485 IPR000398 Thymidylate synthase PF555_16485 IPR020940 Thymidylate synthase, active site PF555_16490 IPR001796 Dihydrofolate reductase domain PF555_16490 IPR012259 Dihydrofolate reductase PF555_16490 IPR024072 Dihydrofolate reductase-like domain superfamily PF555_16490 IPR017925 Dihydrofolate reductase conserved site PF555_16500 IPR036509 Peptide methionine sulphoxide reductase MsrA superfamily PF555_16500 IPR002569 Peptide methionine sulphoxide reductase MsrA PF555_16510 IPR002898 MotA/TolQ/ExbB proton channel PF555_16520 IPR004810 Formyltetrahydrofolate deformylase PF555_16520 IPR002376 Formyl transferase, N-terminal PF555_16520 IPR036477 Formyl transferase, N-terminal domain superfamily PF555_16520 IPR002912 ACT domain PF555_16520 IPR041729 Formyltetrahydrofolate deformylase, C-terminal hydrolase domain PF555_16530 IPR012394 Aldehyde dehydrogenase NAD(P)-dependent PF555_16530 IPR015590 Aldehyde dehydrogenase domain PF555_16530 IPR029510 Aldehyde dehydrogenase, glutamic acid active site PF555_16530 IPR016163 Aldehyde dehydrogenase, C-terminal PF555_16530 IPR016161 Aldehyde/histidinol dehydrogenase PF555_16530 IPR016162 Aldehyde dehydrogenase, N-terminal PF555_16535 IPR026569 Ribosomal protein L28/L24 PF555_16535 IPR037147 Ribosomal protein L28/L24 superfamily PF555_16535 IPR001383 Ribosomal protein L28 PF555_16535 IPR034704 L28p-like PF555_16540 IPR038584 Ribosomal protein L33 superfamily PF555_16540 IPR001705 Ribosomal protein L33 PF555_16540 IPR018264 Ribosomal protein L33, conserved site PF555_16540 IPR011332 Zinc-binding ribosomal protein PF555_16545 IPR036291 NAD(P)-binding domain superfamily PF555_16545 IPR003148 Regulator of K+ conductance, N-terminal PF555_16545 IPR006153 Cation/H+ exchanger PF555_16545 IPR004771 K+/H+ exchanger PF555_16545 IPR038770 Sodium/solute symporter superfamily PF555_16565 IPR012677 Nucleotide-binding alpha-beta plait domain superfamily PF555_16565 IPR035979 RNA-binding domain superfamily PF555_16565 IPR000504 RNA recognition motif domain PF555_16570 IPR013986 DExx box DNA helicase domain superfamily PF555_16570 IPR014017 UvrD-like DNA helicase, C-terminal PF555_16570 IPR000212 DNA helicase, UvrD/REP type PF555_16570 IPR027417 P-loop containing nucleoside triphosphate hydrolase PF555_16570 IPR014016 UvrD-like helicase, ATP-binding domain PF555_16570 IPR034739 UvrD/AddA helicase, N-terminal PF555_16570 IPR005751 ATP-dependent DNA helicase PcrA PF555_16585 IPR013825 DNA topoisomerase, type IA, central region, subdomain 2 PF555_16585 IPR013498 DNA topoisomerase, type IA, zn finger PF555_16585 IPR003602 DNA topoisomerase, type IA, DNA-binding domain PF555_16585 IPR023405 DNA topoisomerase, type IA, core domain PF555_16585 IPR013826 DNA topoisomerase, type IA, central region, subdomain 3 PF555_16585 IPR013824 DNA topoisomerase, type IA, central region, subdomain 1 PF555_16585 IPR013497 DNA topoisomerase, type IA, central PF555_16585 IPR005733 DNA topoisomerase I, bacterial-type PF555_16585 IPR023406 DNA topoisomerase, type IA, active site PF555_16585 IPR000380 DNA topoisomerase, type IA PF555_16585 IPR028612 DNA topoisomerase I, type IA PF555_16585 IPR006171 TOPRIM domain PF555_16585 IPR034149 DNA topoisomerase 1, TOPRIM domain PF555_16585 IPR003601 DNA topoisomerase, type IA, domain 2 PF555_16585 IPR013263 DNA topoisomerase I, zinc ribbon-like, bacterial-type PF555_16595 IPR036388 Winged helix-like DNA-binding domain superfamily PF555_16595 IPR036390 Winged helix DNA-binding domain superfamily PF555_16595 IPR002577 Helix-turn-helix, HxlR type PF555_16600 IPR036291 NAD(P)-binding domain superfamily PF555_16600 IPR013149 Alcohol dehydrogenase, C-terminal PF555_16600 IPR013154 Alcohol dehydrogenase, N-terminal PF555_16600 IPR014182 Alcohol dehydrogenase, zinc-binding type 1 PF555_16600 IPR011032 GroES-like superfamily PF555_16600 IPR020843 Polyketide synthase, enoylreductase domain PF555_16600 IPR002364 Quinone oxidoreductase/zeta-crystallin, conserved site PF555_16605 IPR007236 SlyX PF555_16610 IPR027417 P-loop containing nucleoside triphosphate hydrolase PF555_16610 IPR037118 Valyl-tRNA synthetase, tRNA-binding arm superfamily PF555_16610 IPR017871 ABC transporter, conserved site PF555_16610 IPR003439 ABC transporter-like PF555_16610 IPR032781 ABC-transporter extension domain PF555_16610 IPR032524 ABC transporter Uup, C-terminal PF555_16610 IPR003593 AAA+ ATPase domain PF555_16615 IPR004778 Homoserine/Threonine efflux protein PF555_16615 IPR001123 Amino acid exporter protein, LeuE-type PF555_16620 IPR011920 Lipid A biosynthesis lauroyl (or palmitoleoyl) acyltransferase PF555_16620 IPR004960 Bacterial lipid A biosynthesis acyltransferase PF555_16630 IPR001991 Sodium:dicarboxylate symporter PF555_16630 IPR018107 Sodium:dicarboxylate symporter, conserved site PF555_16630 IPR036458 Sodium:dicarboxylate symporter superfamily PF555_16630 IPR033380 Glutamate-aspartate symport protein GltP/GltT PF555_16630 IPR034703 Proton/glutamate-aspartate symporter GltP PF555_16640 IPR012280 Semialdehyde dehydrogenase, dimerisation domain PF555_16640 IPR000319 Aspartate-semialdehyde dehydrogenase, conserved site PF555_16640 IPR011534 Aspartate-semialdehyde dehydrogenase, gamma-type PF555_16640 IPR036291 NAD(P)-binding domain superfamily PF555_16640 IPR000534 Semialdehyde dehydrogenase, NAD-binding PF555_16640 IPR012080 Aspartate-semialdehyde dehydrogenase PF555_16660 IPR001406 Pseudouridine synthase I, TruA PF555_16660 IPR020103 Pseudouridine synthase, catalytic domain superfamily PF555_16660 IPR020097 Pseudouridine synthase I, TruA, alpha/beta domain PF555_16660 IPR020095 Pseudouridine synthase I, TruA, C-terminal PF555_16670 IPR012340 Nucleic acid-binding, OB-fold PF555_16670 IPR006196 RNA-binding domain, S1, IF1 type PF555_16670 IPR022967 RNA-binding domain, S1 PF555_16670 IPR004368 Translation initiation factor IF-1 PF555_16685 IPR024084 Isopropylmalate dehydrogenase-like domain PF555_16685 IPR004429 Isopropylmalate dehydrogenase PF555_16685 IPR019818 Isocitrate/isopropylmalate dehydrogenase, conserved site PF555_16695 IPR004431 3-isopropylmalate dehydratase, small subunit PF555_16695 IPR015928 Aconitase/3-isopropylmalate dehydratase, swivel PF555_16695 IPR000573 Aconitase A/isopropylmalate dehydratase small subunit, swivel domain PF555_16695 IPR033940 3-isopropylmalate dehydratase, swivel domain PF555_16700 IPR033941 3-Isopropylmalate dehydratase, catalytic domain PF555_16700 IPR036008 Aconitase, iron-sulfur domain PF555_16700 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain PF555_16700 IPR015931 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha, subdomain 1/3 PF555_16700 IPR004430 3-isopropylmalate dehydratase, large subunit PF555_16700 IPR018136 Aconitase family, 4Fe-4S cluster binding site PF555_16710 IPR036390 Winged helix DNA-binding domain superfamily PF555_16710 IPR005119 LysR, substrate-binding PF555_16710 IPR000847 Transcription regulator HTH, LysR PF555_16710 IPR036388 Winged helix-like DNA-binding domain superfamily PF555_16730 IPR020476 NUDIX hydrolase PF555_16730 IPR015797 NUDIX hydrolase-like domain superfamily PF555_16730 IPR020084 NUDIX hydrolase, conserved site PF555_16730 IPR000086 NUDIX hydrolase domain PF555_16730 IPR022927 RNA pyrophosphohydrolase RppH PF555_16735 IPR040442 Pyruvate kinase-like domain superfamily PF555_16735 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain superfamily PF555_16735 IPR036618 PtsI, HPr-binding domain superfamily PF555_16735 IPR008731 Phosphotransferase system, enzyme I N-terminal PF555_16735 IPR000121 PEP-utilising enzyme, C-terminal PF555_16735 IPR036637 Phosphohistidine domain superfamily PF555_16735 IPR023151 PEP-utilising enzyme, conserved site PF555_16735 IPR018274 PEP-utilising enzyme, active site PF555_16735 IPR029016 GAF-like domain superfamily PF555_16735 IPR006318 Phosphotransferase system, enzyme I-like PF555_16735 IPR003018 GAF domain PF555_16735 IPR008279 PEP-utilising enzyme, mobile domain PF555_16740 IPR002016 Haem peroxidase PF555_16740 IPR000763 Catalase-peroxidase haem PF555_16740 IPR010255 Haem peroxidase superfamily PF555_16740 IPR019794 Peroxidase, active site PF555_16745 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like PF555_16745 IPR024884 N-acyl-phosphatidylethanolamine-hydrolysing phospholipase D PF555_16745 IPR001279 Metallo-beta-lactamase PF555_16750 IPR036388 Winged helix-like DNA-binding domain superfamily PF555_16750 IPR036390 Winged helix DNA-binding domain superfamily PF555_16750 IPR000847 Transcription regulator HTH, LysR PF555_16750 IPR005119 LysR, substrate-binding PF555_16760 IPR010987 Glutathione S-transferase, C-terminal-like PF555_16760 IPR036282 Glutathione S-transferase, C-terminal domain superfamily PF555_16760 IPR040079 Glutathione Transferase family PF555_16760 IPR004045 Glutathione S-transferase, N-terminal PF555_16760 IPR036249 Thioredoxin-like superfamily PF555_16765 IPR026881 WYL domain PF555_16765 IPR013196 Helix-turn-helix, type 11 PF555_16765 IPR028349 Protein PafC PF555_16765 IPR036388 Winged helix-like DNA-binding domain superfamily PF555_16765 IPR036390 Winged helix DNA-binding domain superfamily PF555_16765 IPR001034 DeoR-type HTH domain PF555_16770 IPR023733 Pyrophosphatase PpaX PF555_16770 IPR006439 HAD hydrolase, subfamily IA PF555_16770 IPR041492 Haloacid dehalogenase-like hydrolase PF555_16770 IPR023214 HAD superfamily PF555_16770 IPR023198 Phosphoglycolate phosphatase-like, domain 2 PF555_16770 IPR036412 HAD-like superfamily PF555_16775 IPR006145 Pseudouridine synthase, RsuA/RluA PF555_16775 IPR006224 Pseudouridine synthase, RluC/RluD, conserved site PF555_16775 IPR006225 Pseudouridine synthase, RluC/RluD PF555_16775 IPR020103 Pseudouridine synthase, catalytic domain superfamily PF555_16775 IPR002942 RNA-binding S4 domain PF555_16775 IPR036986 RNA-binding S4 domain superfamily PF555_16780 IPR003029 S1 domain PF555_16780 IPR022967 RNA-binding domain, S1 PF555_16780 IPR004659 Ribonuclease E/G PF555_16780 IPR019307 RNA-binding protein AU-1/Ribonuclease E/G PF555_16780 IPR021968 Polyribonucleotide phosphorylase C-terminal PF555_16780 IPR012340 Nucleic acid-binding, OB-fold PF555_16780 IPR028878 Ribonuclease E PF555_16785 IPR020845 AMP-binding, conserved site PF555_16785 IPR000873 AMP-dependent synthetase/ligase PF555_16785 IPR042099 AMP-dependent synthetase-like superfamily PF555_16785 IPR030310 Long-chain-fatty-acid--CoA ligase FadD17 PF555_16785 IPR025110 AMP-binding enzyme, C-terminal domain PF555_16800 IPR036390 Winged helix DNA-binding domain superfamily PF555_16800 IPR036388 Winged helix-like DNA-binding domain superfamily PF555_16800 IPR000847 Transcription regulator HTH, LysR PF555_16800 IPR005119 LysR, substrate-binding PF555_16805 IPR002347 Short-chain dehydrogenase/reductase SDR PF555_16805 IPR020904 Short-chain dehydrogenase/reductase, conserved site PF555_16805 IPR011284 3-oxoacyl-(acyl-carrier-protein) reductase PF555_16805 IPR036291 NAD(P)-binding domain superfamily PF555_16810 IPR004559 Heme chaperone HemW-like PF555_16810 IPR007197 Radical SAM PF555_16810 IPR023404 Radical SAM, alpha/beta horseshoe PF555_16810 IPR010723 HemN, C-terminal PF555_16810 IPR034505 Anaerobic coproporphyrinogen-III oxidase PF555_16810 IPR006638 Elp3/MiaB/NifB PF555_16820 IPR002528 Multi antimicrobial extrusion protein PF555_16825 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily PF555_16825 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal PF555_16825 IPR036250 Acyl-CoA dehydrogenase-like, C-terminal PF555_16825 IPR006091 Acyl-CoA oxidase/dehydrogenase, central domain PF555_16825 IPR013107 Acyl-CoA dehydrogenase, C-terminal domain PF555_16825 IPR037069 Acyl-CoA dehydrogenase/oxidase, N-terminal domain superfamily PF555_16830 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily PF555_16830 IPR037069 Acyl-CoA dehydrogenase/oxidase, N-terminal domain superfamily PF555_16830 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal PF555_16830 IPR036250 Acyl-CoA dehydrogenase-like, C-terminal PF555_16830 IPR013107 Acyl-CoA dehydrogenase, C-terminal domain PF555_16835 IPR004147 UbiB domain PF555_16835 IPR011009 Protein kinase-like domain superfamily PF555_16835 IPR000719 Protein kinase domain PF555_16845 IPR009057 Homeobox-like domain superfamily PF555_16855 IPR039552 Transposase IS66, C-terminal PF555_16855 IPR004291 Transposase, IS66 PF555_16855 IPR024463 Transposase TnpC, homeodomain PF555_16855 IPR024474 Zinc-finger binding domain of transposase IS66 PF555_16865 IPR039552 Transposase IS66, C-terminal PF555_16865 IPR004291 Transposase, IS66 PF555_16865 IPR024463 Transposase TnpC, homeodomain PF555_16865 IPR024474 Zinc-finger binding domain of transposase IS66 PF555_16875 IPR009057 Homeobox-like domain superfamily PF555_16890 IPR003691 Putative fluoride ion transporter CrcB PF555_16900 IPR009051 Alpha-helical ferredoxin PF555_16900 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site PF555_16900 IPR023753 FAD/NAD(P)-binding domain PF555_16900 IPR006006 Glutamate synthase, NADH/NADPH, small subunit 2 PF555_16900 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain PF555_16900 IPR028261 Dihydroprymidine dehydrogenase domain II PF555_16900 IPR036188 FAD/NAD(P)-binding domain superfamily PF555_16910 IPR005584 DNA gyrase inhibitor YacG PF555_16910 IPR013088 Zinc finger, NHR/GATA-type PF555_16915 IPR001279 Metallo-beta-lactamase PF555_16915 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like PF555_16920 IPR033659 Ferrochelatase, N-terminal PF555_16920 IPR001015 Ferrochelatase PF555_16920 IPR019772 Ferrochelatase, active site PF555_16920 IPR033644 Ferrochelatase, C-terminal PF555_16930 IPR015942 Asp/Glu/hydantoin racemase PF555_16930 IPR001920 Asp/Glu racemase PF555_16930 IPR018187 Asp/Glu racemase, active site 1 PF555_16930 IPR033134 Asp/Glu racemase, active site 2 PF555_16930 IPR004391 Glutamate racemase PF555_16940 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain PF555_16940 IPR040156 Electron transfer flavoprotein-ubiquinone oxidoreductase PF555_16940 IPR036188 FAD/NAD(P)-binding domain superfamily PF555_16950 IPR036868 TusA-like domain superfamily PF555_16950 IPR001455 TusA-like domain PF555_16950 IPR022931 Sulfur carrier protein TusA PF555_16955 IPR036318 FAD-binding, type PCMH-like superfamily PF555_16955 IPR016169 FAD-binding, type PCMH, subdomain 2 PF555_16955 IPR005170 Transporter-associated domain PF555_16955 IPR000644 CBS domain PF555_16960 IPR004563 Apolipoprotein N-acyltransferase PF555_16960 IPR003010 Carbon-nitrogen hydrolase PF555_16960 IPR036526 Carbon-nitrogen hydrolase superfamily PF555_16965 IPR008231 Probable chaperone CsaA PF555_16965 IPR012340 Nucleic acid-binding, OB-fold PF555_16965 IPR002547 tRNA-binding domain PF555_16975 IPR012902 Prokaryotic N-terminal methylation site PF555_16975 IPR013545 Type II secretion system protein G PF555_16975 IPR010054 General secretion pathway protein G PF555_16975 IPR000983 Bacterial general secretion pathway protein G-type pilin PF555_16980 IPR003004 GspF/PilC family PF555_16980 IPR018076 Type II secretion system F domain PF555_16980 IPR011850 General secretion pathway protein F PF555_16980 IPR042094 Type II secretion system F domain superfamily PF555_16980 IPR001992 Type II secretion system conserved site PF555_16985 IPR005259 Primosomal protein N' PF555_16985 IPR014001 Helicase superfamily 1/2, ATP-binding domain PF555_16985 IPR027417 P-loop containing nucleoside triphosphate hydrolase PF555_16985 IPR011545 DEAD/DEAH box helicase domain PF555_16985 IPR001650 Helicase, C-terminal PF555_16985 IPR041222 Primosomal protein N', 3' DNA-binding domain PF555_16985 IPR042115 Primosomal protein N', 3' DNA-binding domain superfamily PF555_16985 IPR041236 Primosomal protein N, C-terminal domain PF555_16985 IPR040498 PriA DNA helicase, Cys-rich region (CRR) domain PF555_16990 IPR004771 K+/H+ exchanger PF555_16990 IPR006153 Cation/H+ exchanger PF555_16990 IPR003148 Regulator of K+ conductance, N-terminal PF555_16990 IPR020884 Glutathione-regulated potassium-efflux system protein KefB PF555_16990 IPR038770 Sodium/solute symporter superfamily PF555_16990 IPR036291 NAD(P)-binding domain superfamily PF555_16995 IPR023212 Heat shock protein Hsp33, helix hairpin bin domain superfamily PF555_16995 IPR000397 Heat shock protein Hsp33 PF555_16995 IPR016154 Heat shock protein Hsp33, C-terminal PF555_16995 IPR016153 Heat shock protein Hsp33, N-terminal PF555_17005 IPR002939 Chaperone DnaJ, C-terminal PF555_17005 IPR023859 DNA-binding protein, curved-DNA PF555_17005 IPR036869 Chaperone J-domain superfamily PF555_17005 IPR001623 DnaJ domain PF555_17005 IPR018253 DnaJ domain, conserved site PF555_17005 IPR008971 HSP40/DnaJ peptide-binding PF555_17010 IPR022835 Chaperone modulatory protein CbpM PF555_17015 IPR004488 Magnesium/cobalt transport protein CorA PF555_17015 IPR002523 Mg2+ transporter protein, CorA-like/Zinc transport protein ZntB PF555_17020 IPR020568 Ribosomal protein S5 domain 2-type fold PF555_17020 IPR015848 Polyribonucleotide nucleotidyltransferase, RNA-binding domain PF555_17020 IPR022967 RNA-binding domain, S1 PF555_17020 IPR003029 S1 domain PF555_17020 IPR036456 Polyribonucleotide nucleotidyltransferase, RNA-binding domain superfamily PF555_17020 IPR004088 K Homology domain, type 1 PF555_17020 IPR027408 PNPase/RNase PH domain superfamily PF555_17020 IPR004087 K Homology domain PF555_17020 IPR001247 Exoribonuclease, phosphorolytic domain 1 PF555_17020 IPR036345 Exoribonuclease, PH domain 2 superfamily PF555_17020 IPR015847 Exoribonuclease, phosphorolytic domain 2 PF555_17020 IPR012162 Polyribonucleotide nucleotidyltransferase PF555_17020 IPR036612 K Homology domain, type 1 superfamily PF555_17020 IPR012340 Nucleic acid-binding, OB-fold PF555_17025 IPR000589 Ribosomal protein S15 PF555_17025 IPR005290 Ribosomal protein S15, bacterial-type PF555_17025 IPR009068 S15/NS1, RNA-binding PF555_17030 IPR001466 Beta-lactamase-related PF555_17030 IPR012338 Beta-lactamase/transpeptidase-like PF555_17035 IPR027785 UvrD-like helicase C-terminal domain PF555_17035 IPR041851 RecBCD enzyme subunit RecD, N-terminal domain PF555_17035 IPR027417 P-loop containing nucleoside triphosphate hydrolase PF555_17035 IPR003593 AAA+ ATPase domain PF555_17035 IPR006344 RecBCD enzyme subunit RecD PF555_17040 IPR000212 DNA helicase, UvrD/REP type PF555_17040 IPR011604 Exonuclease, phage-type/RecB, C-terminal PF555_17040 IPR027417 P-loop containing nucleoside triphosphate hydrolase PF555_17040 IPR038726 PD-(D/E)XK endonuclease-like domain, AddAB-type PF555_17040 IPR004586 RecBCD enzyme subunit RecB PF555_17040 IPR011335 Restriction endonuclease type II-like PF555_17040 IPR014016 UvrD-like helicase, ATP-binding domain PF555_17040 IPR034739 UvrD/AddA helicase, N-terminal PF555_17040 IPR014017 UvrD-like DNA helicase, C-terminal PF555_17045 IPR027417 P-loop containing nucleoside triphosphate hydrolase PF555_17045 IPR013986 DExx box DNA helicase domain superfamily PF555_17045 IPR041500 RecC, C-terminal PF555_17045 IPR011335 Restriction endonuclease type II-like PF555_17045 IPR006697 RecBCD enzyme subunit RecC PF555_17055 IPR027417 P-loop containing nucleoside triphosphate hydrolase PF555_17055 IPR022488 Polyphosphate kinase-2-related PF555_17065 IPR004033 UbiE/COQ5 methyltransferase PF555_17065 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase PF555_17065 IPR023576 UbiE/COQ5 methyltransferase, conserved site PF555_17075 IPR011009 Protein kinase-like domain superfamily PF555_17075 IPR010232 Probable protein kinase UbiB PF555_17075 IPR004147 UbiB domain PF555_17080 IPR002938 FAD-binding domain PF555_17080 IPR036188 FAD/NAD(P)-binding domain superfamily PF555_17085 IPR038019 Phosphoribosyl-AMP cyclohydrolase domain superfamily PF555_17085 IPR002496 Phosphoribosyl-AMP cyclohydrolase domain PF555_17085 IPR026660 Phosphoribosyl-AMP cyclohydrolase PF555_17100 IPR001516 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminal PF555_17100 IPR005663 Monovalent cation proton antiporter subunit A PF555_17100 IPR001750 NADH:quinone oxidoreductase/Mrp antiporter, membrane subunit PF555_17100 IPR025383 Domain of unknown function DUF4040 PF555_17100 IPR005281 Monovalent cation:proton antiporter, subunit B PF555_17100 IPR007182 Na+/H+ antiporter MnhB subunit-related protein PF555_17105 IPR006673 Mnh complex subunit C1 PF555_17105 IPR039428 NADH-ubiquinone oxidoreductase chain 4L/Mnh complex subunit C1-like PF555_17110 IPR004775 Na(+)/H(+) antiporter subunit D1 PF555_17110 IPR001750 NADH:quinone oxidoreductase/Mrp antiporter, membrane subunit PF555_17115 IPR002758 Na+/H+ antiporter subunit E PF555_17120 IPR007208 Na(+)/H(+) antiporter subunit F-like PF555_17125 IPR005133 Na+/H+ antiporter subunit G PF555_17130 IPR000238 Ribosome-binding factor A PF555_17130 IPR023799 Ribosome-binding factor A domain superfamily PF555_17130 IPR015946 K homology domain-like, alpha/beta PF555_17135 IPR009000 Translation protein, beta-barrel domain superfamily PF555_17135 IPR036925 Translation initiation factor IF-2, domain 3 superfamily PF555_17135 IPR023115 Translation initiation factor IF- 2, domain 3 PF555_17135 IPR015760 Translation initiation factor IF- 2 PF555_17135 IPR000178 Translation initiation factor aIF-2, bacterial-like PF555_17135 IPR000795 Transcription factor, GTP-binding domain PF555_17135 IPR009061 Putative DNA-binding domain superfamily PF555_17135 IPR027417 P-loop containing nucleoside triphosphate hydrolase PF555_17135 IPR006847 Translation initiation factor IF-2, N-terminal PF555_17135 IPR013575 Initiation factor 2 associated domain, bacterial PF555_17135 IPR005225 Small GTP-binding protein domain PF555_17140 IPR009019 K homology domain superfamily, prokaryotic type PF555_17140 IPR010995 DNA repair Rad51/transcription factor NusA, alpha-helical PF555_17140 IPR015946 K homology domain-like, alpha/beta PF555_17140 IPR025249 KH domain, NusA-like PF555_17140 IPR012340 Nucleic acid-binding, OB-fold PF555_17140 IPR030842 Transcription termination/antitermination protein NusA, bacterial PF555_17140 IPR036555 NusA, N-terminal domain superfamily PF555_17140 IPR022967 RNA-binding domain, S1 PF555_17140 IPR003029 S1 domain PF555_17140 IPR013735 Transcription factor NusA, N-terminal PF555_17140 IPR010214 Transcription termination factor NusA, C-terminal duplication PF555_17140 IPR010213 Transcription termination factor NusA PF555_17145 IPR035956 RimP, N-terminal domain superfamily PF555_17145 IPR036847 Ribosome maturation factor RimP, C-terminal domain superfamily PF555_17145 IPR028989 Ribosome maturation factor RimP, N-terminal PF555_17145 IPR003728 Ribosome maturation factor RimP PF555_17145 IPR028998 Ribosome maturation factor RimP, C-terminal PF555_17165 IPR004692 Preprotein translocase SecG subunit PF555_17170 IPR000652 Triosephosphate isomerase PF555_17170 IPR022896 Triosephosphate isomerase, bacterial/eukaryotic PF555_17170 IPR020861 Triosephosphate isomerase, active site PF555_17170 IPR013785 Aldolase-type TIM barrel PF555_17170 IPR035990 Triosephosphate isomerase superfamily PF555_17175 IPR013374 ATPase, type IV, pilus assembly, PilB PF555_17175 IPR027417 P-loop containing nucleoside triphosphate hydrolase PF555_17175 IPR001482 Type II/IV secretion system protein PF555_17175 IPR037257 General secretory system II, protein E, N-terminal superfamily PF555_17175 IPR007831 General secretory system II, protein E, N-terminal PF555_17175 IPR042181 Type II secretion system, protein E, N-terminal PF555_17180 IPR042094 Type II secretion system F domain superfamily PF555_17180 IPR018076 Type II secretion system F domain PF555_17180 IPR003004 GspF/PilC family PF555_17180 IPR001992 Type II secretion system conserved site PF555_17185 IPR010627 Peptidase A24A, N-terminal PF555_17185 IPR000045 Prepilin type IV endopeptidase, peptidase domain PF555_17185 IPR014032 Peptidase A24A, prepilin type IV, bacterial PF555_17190 IPR001977 Dephospho-CoA kinase PF555_17190 IPR027417 P-loop containing nucleoside triphosphate hydrolase PF555_17200 IPR029028 Alpha/beta knot methyltransferases PF555_17200 IPR029064 50S ribosomal protein L30e-like PF555_17200 IPR004441 RNA methyltransferase TrmH family PF555_17200 IPR001537 tRNA/rRNA methyltransferase, SpoU type PF555_17200 IPR013123 RNA 2-O ribose methyltransferase, substrate binding PF555_17200 IPR029026 tRNA (guanine-N1-)-methyltransferase, N-terminal PF555_17200 IPR024915 23S rRNA (guanosine-2-O-)-methyltransferase RlmB PF555_17205 IPR009664 Pyrimidine/purine nucleoside phosphorylase PF555_17205 IPR014710 RmlC-like jelly roll fold PF555_17205 IPR011051 RmlC-like cupin domain superfamily PF555_17215 IPR003395 RecF/RecN/SMC, N-terminal PF555_17215 IPR004604 DNA recombination/repair protein RecN PF555_17215 IPR027417 P-loop containing nucleoside triphosphate hydrolase PF555_17220 IPR003774 Protein of unknown function UPF0301 PF555_17225 IPR012337 Ribonuclease H-like superfamily PF555_17225 IPR005227 Putative pre-16S rRNA nuclease PF555_17225 IPR006641 YqgF/RNase H-like domain PF555_17225 IPR037027 YqgF/RNase H-like domain superfamily PF555_17230 IPR039562 Membrane fusion protein, biotin-lipoyl like domain PF555_17230 IPR022871 Para-hydroxybenzoic acid efflux pump, subunit AaeA PF555_17230 IPR006143 RND efflux pump, membrane fusion protein PF555_17255 IPR014048 Methylated-DNA-[protein]-cysteine S-methyltransferase, DNA binding PF555_17255 IPR036388 Winged helix-like DNA-binding domain superfamily PF555_17255 IPR008332 Methylguanine DNA methyltransferase, ribonuclease-like domain PF555_17255 IPR001497 Methylated-DNA-[protein]-cysteine S-methyltransferase, active site PF555_17255 IPR036631 Methylated DNA-protein cysteine methyltransferase domain superfamily PF555_17255 IPR018060 DNA binding HTH domain, AraC-type PF555_17255 IPR018062 HTH domain AraC-type, conserved site PF555_17255 IPR035451 Ada-like domain superfamily PF555_17255 IPR004026 Ada DNA repair, metal-binding PF555_17255 IPR036217 Methylated DNA-protein cysteine methyltransferase, DNA binding domain PF555_17255 IPR016221 Bifunctional regulatory protein Ada PF555_17255 IPR009057 Homeobox-like domain superfamily PF555_17260 IPR000462 CDP-alcohol phosphatidyltransferase PF555_17260 IPR023762 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase, bacterial PF555_17260 IPR004570 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase PF555_17270 IPR038476 UvrC homology region 2 superfamily PF555_17270 IPR001162 UvrC family homology region PF555_17270 IPR004791 UvrABC system, subunit C PF555_17270 IPR036876 UVR domain superfamily PF555_17270 IPR001943 UVR domain PF555_17270 IPR010994 RuvA domain 2-like PF555_17270 IPR003583 Helix-hairpin-helix DNA-binding motif, class 1 PF555_17270 IPR035901 GIY-YIG endonuclease superfamily PF555_17270 IPR000305 GIY-YIG endonuclease PF555_17285 IPR036291 NAD(P)-binding domain superfamily PF555_17285 IPR012799 Fatty oxidation complex, alpha subunit FadB PF555_17285 IPR001753 Enoyl-CoA hydratase/isomerase PF555_17285 IPR018376 Enoyl-CoA hydratase/isomerase, conserved site PF555_17285 IPR006108 3-hydroxyacyl-CoA dehydrogenase, C-terminal PF555_17285 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily PF555_17285 IPR006176 3-hydroxyacyl-CoA dehydrogenase, NAD binding PF555_17285 IPR006180 3-hydroxyacyl-CoA dehydrogenase, conserved site PF555_17285 IPR029045 ClpP/crotonase-like domain superfamily PF555_17290 IPR012805 Acetyl-CoA C-acyltransferase FadA PF555_17290 IPR002155 Thiolase PF555_17290 IPR016039 Thiolase-like PF555_17290 IPR020615 Thiolase, acyl-enzyme intermediate active site PF555_17290 IPR020610 Thiolase, active site PF555_17290 IPR020617 Thiolase, C-terminal PF555_17290 IPR020613 Thiolase, conserved site PF555_17290 IPR020616 Thiolase, N-terminal PF555_17310 IPR009061 Putative DNA-binding domain superfamily PF555_17310 IPR000551 MerR-type HTH domain PF555_17320 IPR001853 DSBA-like thioredoxin domain PF555_17320 IPR036249 Thioredoxin-like superfamily PF555_17335 IPR003594 Histidine kinase/HSP90-like ATPase PF555_17335 IPR036890 Histidine kinase/HSP90-like ATPase superfamily PF555_17335 IPR037196 HSP90, C-terminal domain PF555_17335 IPR001404 Heat shock protein Hsp90 family PF555_17335 IPR020575 Heat shock protein Hsp90, N-terminal PF555_17335 IPR020568 Ribosomal protein S5 domain 2-type fold PF555_17350 IPR018461 Na+/H+ antiporter, NhaC-like, C-terminal PF555_17350 IPR032813 Putative Na+/H+ antiporter, N-terminal PF555_17375 IPR038120 RNA polymerase Rpb1, funnel domain superfamily PF555_17375 IPR007081 RNA polymerase Rpb1, domain 5 PF555_17375 IPR007083 RNA polymerase Rpb1, domain 4 PF555_17375 IPR042102 RNA polymerase Rpb1, domain 3 superfamily PF555_17375 IPR006592 RNA polymerase, N-terminal PF555_17375 IPR007080 RNA polymerase Rpb1, domain 1 PF555_17375 IPR000722 RNA polymerase, alpha subunit PF555_17375 IPR012754 DNA-directed RNA polymerase, subunit beta-prime PF555_17375 IPR007066 RNA polymerase Rpb1, domain 3 PF555_17380 IPR007642 RNA polymerase Rpb2, domain 2 PF555_17380 IPR007641 RNA polymerase Rpb2, domain 7 PF555_17380 IPR007645 RNA polymerase Rpb2, domain 3 PF555_17380 IPR037034 RNA polymerase Rpb2, domain 2 superfamily PF555_17380 IPR007644 RNA polymerase, beta subunit, protrusion PF555_17380 IPR014724 RNA polymerase Rpb2, OB-fold PF555_17380 IPR010243 DNA-directed RNA polymerase beta subunit, bacterial-type PF555_17380 IPR037033 DNA-directed RNA polymerase, subunit 2, hybrid-binding domain superfamily PF555_17380 IPR007120 DNA-directed RNA polymerase, subunit 2, hybrid-binding domain PF555_17380 IPR015712 DNA-directed RNA polymerase, subunit 2 PF555_17380 IPR019462 DNA-directed RNA polymerase, beta subunit, external 1 domain PF555_17380 IPR042107 DNA-directed RNA polymerase, beta subunit, external 1 domain superfamily PF555_17380 IPR007121 RNA polymerase, beta subunit, conserved site PF555_17385 IPR036235 Ribosomal protein L7/L12, oligomerisation domain superfamily PF555_17385 IPR008932 Ribosomal protein L7/L12, oligomerisation PF555_17385 IPR013823 Ribosomal protein L7/L12, C-terminal PF555_17385 IPR000206 Ribosomal protein L7/L12 PF555_17385 IPR014719 Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-like PF555_17390 IPR022973 Ribosomal protein L10 PF555_17390 IPR002363 Ribosomal protein L10, eubacterial, conserved site PF555_17390 IPR001790 Ribosomal protein L10P PF555_17395 IPR023673 Ribosomal protein L1, conserved site PF555_17395 IPR028364 Ribosomal protein L1/ribosomal biogenesis protein PF555_17395 IPR016095 Ribosomal protein L1, 3-layer alpha/beta-sandwich PF555_17395 IPR002143 Ribosomal protein L1 PF555_17395 IPR005878 Ribosomal protein L1, bacterial-type PF555_17395 IPR023674 Ribosomal protein L1-like PF555_17400 IPR000911 Ribosomal protein L11/L12 PF555_17400 IPR036796 Ribosomal protein L11/L12, N-terminal domain superfamily PF555_17400 IPR006519 Ribosomal protein L11, bacterial-type PF555_17400 IPR020783 Ribosomal protein L11, C-terminal PF555_17400 IPR036769 Ribosomal protein L11, C-terminal domain superfamily PF555_17400 IPR020785 Ribosomal protein L11, conserved site PF555_17400 IPR020784 Ribosomal protein L11, N-terminal PF555_17405 IPR008991 Translation protein SH3-like domain superfamily PF555_17405 IPR015869 Transcription antitermination protein, NusG, bacteria, conserved site PF555_17405 IPR001062 Transcription antitermination protein, NusG PF555_17405 IPR005824 KOW PF555_17405 IPR036735 NusG, N-terminal domain superfamily PF555_17405 IPR006645 NusG, N-terminal PF555_17405 IPR014722 Ribosomal protein L2, domain 2 PF555_17410 IPR005807 SecE subunit of protein translocation complex, bacterial-like PF555_17410 IPR038379 SecE superfamily PF555_17410 IPR001901 Protein translocase complex, SecE/Sec61-gamma subunit PF555_17420 IPR004160 Translation elongation factor EFTu/EF1A, C-terminal PF555_17420 IPR041709 Elongation factor Tu (EF-Tu), GTP-binding domain PF555_17420 IPR004161 Translation elongation factor EFTu-like, domain 2 PF555_17420 IPR033720 Elongation factor Tu, domain 2 PF555_17420 IPR031157 Tr-type G domain, conserved site PF555_17420 IPR027417 P-loop containing nucleoside triphosphate hydrolase PF555_17420 IPR005225 Small GTP-binding protein domain PF555_17420 IPR000795 Transcription factor, GTP-binding domain PF555_17420 IPR009000 Translation protein, beta-barrel domain superfamily PF555_17420 IPR009001 Translation elongation factor EF1A/initiation factor IF2gamma, C-terminal PF555_17420 IPR004541 Translation elongation factor EFTu/EF1A, bacterial/organelle PF555_17445 IPR006805 Anthranilate synthase component I, N-terminal PF555_17445 IPR005801 ADC synthase PF555_17445 IPR019999 Anthranilate synthase component I-like PF555_17445 IPR015890 Chorismate-utilising enzyme, C-terminal PF555_17445 IPR005256 Anthranilate synthase component I, PabB-like PF555_17450 IPR023214 HAD superfamily PF555_17450 IPR036412 HAD-like superfamily PF555_17450 IPR006439 HAD hydrolase, subfamily IA PF555_17450 IPR041492 Haloacid dehalogenase-like hydrolase PF555_17450 IPR023198 Phosphoglycolate phosphatase-like, domain 2 PF555_17450 IPR006346 2-phosphoglycolate phosphatase-like, prokaryotic PF555_17450 IPR037512 Phosphoglycolate phosphatase, prokaryotic PF555_17455 IPR022128 Domain of unknown function DUF3662 PF555_17455 IPR000253 Forkhead-associated (FHA) domain PF555_17455 IPR042287 FhaA, N-terminal PF555_17455 IPR008984 SMAD/FHA domain superfamily PF555_17460 IPR004846 Type II/III secretion system PF555_17460 IPR001775 GspD/PilQ family PF555_17460 IPR013356 Type II secretion system GspD PF555_17460 IPR004845 Type II secretion system GspD, conserved site PF555_17460 IPR005644 NolW-like PF555_17460 IPR038591 NolW-like superfamily PF555_17475 IPR027444 Histone-like protein H-NS, C-terminal domain PF555_17475 IPR037150 Histone-like protein H-NS, C-terminal domain superfamily PF555_17475 IPR001801 Histone-like protein H-NS PF555_17500 IPR000860 Porphobilinogen deaminase PF555_17500 IPR022419 Porphobilinogen deaminase, dipyrromethane cofactor binding site PF555_17500 IPR022417 Porphobilinogen deaminase, N-terminal PF555_17500 IPR022418 Porphobilinogen deaminase, C-terminal PF555_17500 IPR036803 Porphobilinogen deaminase, C-terminal domain superfamily PF555_17505 IPR011006 CheY-like superfamily PF555_17505 IPR007492 LytTR DNA-binding domain PF555_17505 IPR001789 Signal transduction response regulator, receiver domain PF555_17510 IPR011620 Signal transduction histidine kinase, 5TM receptor LytS, transmembrane region PF555_17510 IPR010559 Signal transduction histidine kinase, internal region PF555_17510 IPR036890 Histidine kinase/HSP90-like ATPase superfamily PF555_17510 IPR029016 GAF-like domain superfamily PF555_17510 IPR003594 Histidine kinase/HSP90-like ATPase PF555_17515 IPR008948 L-Aspartase-like PF555_17515 IPR022761 Fumarate lyase, N-terminal PF555_17515 IPR020557 Fumarate lyase, conserved site PF555_17515 IPR000362 Fumarate lyase family PF555_17515 IPR009049 Argininosuccinate lyase PF555_17515 IPR029419 Argininosuccinate lyase, C-terminal PF555_17515 IPR024083 Fumarase/histidase, N-terminal PF555_17520 IPR007457 Fe(II) trafficking protein YggX PF555_17520 IPR036766 Fe(II) trafficking protein YggX superfamily PF555_17525 IPR038078 PhoU-like domain superfamily PF555_17525 IPR026022 PhoU domain PF555_17525 IPR028366 Phosphate transport system protein PhoU PF555_17530 IPR003423 Outer membrane efflux protein PF555_17530 IPR010130 Type I secretion outer membrane protein, TolC PF555_17535 IPR004779 Carboxylate/Amino Acid/Amine Transporter PF555_17535 IPR000620 EamA domain PF555_17550 IPR037509 Phosphomethylpyrimidine synthase PF555_17550 IPR025747 ThiC-associated domain PF555_17550 IPR038521 ThiC/Bza superfamily PF555_17550 IPR002817 Phosphomethylpyrimidine synthase ThiC/5-hydroxybenzimidazole synthase BzaA/B PF555_17555 IPR004385 Nucleoside diphosphate pyrophosphatase PF555_17555 IPR015797 NUDIX hydrolase-like domain superfamily PF555_17555 IPR000086 NUDIX hydrolase domain PF555_17560 IPR029052 Metallo-dependent phosphatase-like PF555_17560 IPR004843 Calcineurin-like phosphoesterase domain, ApaH type PF555_17560 IPR026575 3,5-cyclic adenosine monophosphate phosphodiesterase CpdA PF555_17565 IPR012784 RNA polymerase-binding transcription factor DksA PF555_17565 IPR037187 DksA, N-terminal domain superfamily PF555_17565 IPR020460 Zinc finger, DksA/TraR C4-type, bacteria PF555_17565 IPR000962 Zinc finger, DksA/TraR C4-type PF555_17565 IPR020458 Zinc finger, DksA/TraR C4-type conserved site PF555_17570 IPR022380 Glutamyl-Q tRNA(Asp) synthetase PF555_17570 IPR000924 Glutamyl/glutaminyl-tRNA synthetase PF555_17570 IPR020058 Glutamyl/glutaminyl-tRNA synthetase, class Ib, catalytic domain PF555_17570 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold PF555_17575 IPR001182 Probable peptidoglycan glycosyltransferase FtsW/RodA PF555_17575 IPR013437 Probable peptidoglycan glycosyltransferase FtsW PF555_17575 IPR018365 Cell cycle, FtsW / RodA / SpoVE, conserved site PF555_17580 IPR036565 Mur-like, catalytic domain superfamily PF555_17580 IPR004101 Mur ligase, C-terminal PF555_17580 IPR036615 Mur ligase, C-terminal domain superfamily PF555_17580 IPR013221 Mur ligase, central PF555_17580 IPR005762 UDP-N-acetylmuramoylalanine-D-glutamate ligase PF555_17590 IPR027417 P-loop containing nucleoside triphosphate hydrolase PF555_17590 IPR006073 GTP binding domain PF555_17590 IPR011642 Nucleoside transporter/FeoB GTPase, Gate domain PF555_17590 IPR030389 FeoB-type guanine nucleotide-binding (G) domain PF555_17590 IPR011640 Ferrous iron transport protein B, C-terminal PF555_17590 IPR003373 Ferrous iron transport protein B PF555_17600 IPR011932 Tyrosine recombinase XerD PF555_17600 IPR004107 Integrase, SAM-like, N-terminal PF555_17600 IPR010998 Integrase/recombinase, N-terminal PF555_17600 IPR023009 Tyrosine recombinase XerC/XerD PF555_17600 IPR013762 Integrase-like, catalytic domain superfamily PF555_17600 IPR011010 DNA breaking-rejoining enzyme, catalytic core PF555_17600 IPR002104 Integrase, catalytic domain PF555_17605 IPR033954 Disulphide bond isomerase, DsbC/G PF555_17605 IPR018950 Disulphide bond isomerase, DsbC/G, N-terminal PF555_17605 IPR009094 Disulphide bond isomerase DsbC/G, N-terminal domain superfamily PF555_17605 IPR012336 Thioredoxin-like fold PF555_17605 IPR036249 Thioredoxin-like superfamily PF555_17605 IPR017937 Thioredoxin, conserved site PF555_17605 IPR013766 Thioredoxin domain PF555_17610 IPR036291 NAD(P)-binding domain superfamily PF555_17610 IPR019811 Homoserine dehydrogenase, conserved site PF555_17610 IPR001342 Homoserine dehydrogenase, catalytic PF555_17610 IPR002912 ACT domain PF555_17610 IPR005106 Aspartate/homoserine dehydrogenase, NAD-binding PF555_17610 IPR016204 Homoserine dehydrogenase PF555_17615 IPR036052 Tryptophan synthase beta subunit-like PLP-dependent enzyme PF555_17615 IPR001926 Pyridoxal-phosphate dependent enzyme PF555_17615 IPR000634 Serine/threonine dehydratase, pyridoxal-phosphate-binding site PF555_17615 IPR026260 Threonine synthase, bacterial/archaeal PF555_17615 IPR004450 Threonine synthase-like PF555_17620 IPR012338 Beta-lactamase/transpeptidase-like PF555_17620 IPR018044 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A PF555_17620 IPR001967 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A, N-terminal PF555_17625 IPR011006 CheY-like superfamily PF555_17625 IPR016032 Signal transduction response regulator, C-terminal effector PF555_17625 IPR001789 Signal transduction response regulator, receiver domain PF555_17625 IPR000792 Transcription regulator LuxR, C-terminal PF555_17630 IPR000014 PAS domain PF555_17630 IPR004358 Signal transduction histidine kinase-related protein, C-terminal PF555_17630 IPR005467 Histidine kinase domain PF555_17630 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain PF555_17630 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily PF555_17630 IPR036890 Histidine kinase/HSP90-like ATPase superfamily PF555_17630 IPR003594 Histidine kinase/HSP90-like ATPase PF555_17635 IPR003593 AAA+ ATPase domain PF555_17635 IPR011006 CheY-like superfamily PF555_17635 IPR009057 Homeobox-like domain superfamily PF555_17635 IPR002197 DNA binding HTH domain, Fis-type PF555_17635 IPR027417 P-loop containing nucleoside triphosphate hydrolase PF555_17635 IPR002078 RNA polymerase sigma factor 54 interaction domain PF555_17635 IPR025662 Sigma-54 interaction domain, ATP-binding site 1 PF555_17635 IPR025943 Sigma-54 interaction domain, ATP-binding site 2 PF555_17635 IPR025944 Sigma-54 interaction domain, conserved site PF555_17635 IPR001789 Signal transduction response regulator, receiver domain PF555_17640 IPR029045 ClpP/crotonase-like domain superfamily PF555_17640 IPR001478 PDZ domain PF555_17640 IPR036034 PDZ superfamily PF555_17640 IPR005151 Tail specific protease PF555_17640 IPR004447 C-terminal-processing peptidase S41A PF555_17645 IPR011258 BPG-independent PGAM, N-terminal PF555_17645 IPR006124 Metalloenzyme PF555_17645 IPR036646 BPG-independent phosphoglycerate mutase, domain B superfamily PF555_17645 IPR005995 Phosphoglycerate mutase, 2,3-bisphosphoglycerate-independent PF555_17645 IPR017850 Alkaline-phosphatase-like, core domain superfamily PF555_17650 IPR030923 LPS export ABC transporter permease LptG PF555_17650 IPR005495 Permease LptG/LptF-related PF555_17660 IPR011356 Peptidase M17, leucine aminopeptidase/peptidase B PF555_17660 IPR000819 Peptidase M17, leucyl aminopeptidase, C-terminal PF555_17660 IPR023042 Peptidase M17, leucine aminopeptidase PF555_17660 IPR008283 Peptidase M17, leucyl aminopeptidase, N-terminal PF555_17680 IPR017938 Riboflavin synthase-like beta-barrel PF555_17680 IPR001783 Lumazine-binding protein PF555_17680 IPR023366 ATP synthase subunit alpha, N-terminal domain-like superfamily PF555_17680 IPR026017 Lumazine-binding domain PF555_17690 IPR016192 APOBEC/CMP deaminase, zinc-binding PF555_17690 IPR002125 Cytidine and deoxycytidylate deaminase domain PF555_17690 IPR016193 Cytidine deaminase-like PF555_17690 IPR024072 Dihydrofolate reductase-like domain superfamily PF555_17690 IPR004794 Riboflavin biosynthesis protein RibD PF555_17690 IPR011549 Riboflavin-specific deaminase, C-terminal PF555_17690 IPR002734 Bacterial bifunctional deaminase-reductase, C-terminal PF555_17695 IPR005144 ATP-cone domain PF555_17695 IPR003796 Ribonucleotide reductase regulator NrdR-like PF555_17700 IPR001905 Ammonium transporter PF555_17700 IPR024041 Ammonium transporter AmtB-like domain PF555_17700 IPR029020 Ammonium/urea transporter PF555_17700 IPR018047 Ammonium transporter, conserved site PF555_17705 IPR002332 Nitrogen regulatory protein P-II, urydylation site PF555_17705 IPR017918 Nitrogen regulatory protein PII, conserved site PF555_17705 IPR015867 Nitrogen regulatory protein PII/ATP phosphoribosyltransferase, C-terminal PF555_17705 IPR011322 Nitrogen regulatory PII-like, alpha/beta PF555_17705 IPR002187 Nitrogen regulatory protein PII PF555_17755 IPR009061 Putative DNA-binding domain superfamily PF555_17755 IPR000551 MerR-type HTH domain PF555_17755 IPR011794 Hg(II)-responsive transcriptional regulator PF555_17770 IPR027417 P-loop containing nucleoside triphosphate hydrolase PF555_17770 IPR011642 Nucleoside transporter/FeoB GTPase, Gate domain PF555_17770 IPR030389 FeoB-type guanine nucleotide-binding (G) domain PF555_17770 IPR011640 Ferrous iron transport protein B, C-terminal PF555_17770 IPR003373 Ferrous iron transport protein B PF555_17770 IPR006073 GTP binding domain PF555_17795 IPR011706 Multicopper oxidase, type 2 PF555_17795 IPR001117 Multicopper oxidase, type 1 PF555_17795 IPR002355 Multicopper oxidase, copper-binding site PF555_17795 IPR008972 Cupredoxin PF555_17795 IPR011707 Multicopper oxidase, type 3 PF555_17795 IPR006376 Copper-resistance protein CopA PF555_17795 IPR033138 Multicopper oxidases, conserved site PF555_17795 IPR019546 Twin-arginine translocation pathway, signal sequence, bacterial/archaeal PF555_17795 IPR006311 Twin-arginine translocation pathway, signal sequence PF555_17795 IPR034279 Copper resistance protein, third cupredoxin domain PF555_17795 IPR034282 Copper resistance protein CopA, second cupredoxin domain PF555_17795 IPR034284 Copper resistance protein, first cupredoxin domain PF555_17805 IPR001789 Signal transduction response regulator, receiver domain PF555_17805 IPR039420 Transcriptional regulatory protein WalR-like PF555_17805 IPR036388 Winged helix-like DNA-binding domain superfamily PF555_17805 IPR001867 OmpR/PhoB-type DNA-binding domain PF555_17805 IPR006291 Transcriptional regulatory protein PcoR, heavy metal response PF555_17805 IPR011006 CheY-like superfamily PF555_17810 IPR004358 Signal transduction histidine kinase-related protein, C-terminal PF555_17810 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain PF555_17810 IPR005467 Histidine kinase domain PF555_17810 IPR036890 Histidine kinase/HSP90-like ATPase superfamily PF555_17810 IPR003594 Histidine kinase/HSP90-like ATPase PF555_17810 IPR003660 HAMP domain PF555_17810 IPR006290 Heavy metal sensor kinase PF555_17810 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily PF555_17815 IPR036412 HAD-like superfamily PF555_17815 IPR008250 P-type ATPase, A domain superfamily PF555_17815 IPR023298 P-type ATPase, transmembrane domain superfamily PF555_17815 IPR023214 HAD superfamily PF555_17815 IPR023299 P-type ATPase, cytoplasmic domain N PF555_17815 IPR018303 P-type ATPase, phosphorylation site PF555_17815 IPR027256 P-type ATPase, subfamily IB PF555_17815 IPR001757 P-type ATPase PF555_17845 IPR036188 FAD/NAD(P)-binding domain superfamily PF555_17845 IPR031043 Putative histamine N-monooxygenase PF555_17845 IPR025700 L-lysine 6-monooxygenase/L-ornithine 5-monooxygenase PF555_17850 IPR010105 TonB-dependent siderophore receptor PF555_17850 IPR012910 TonB-dependent receptor, plug domain PF555_17850 IPR037066 TonB-dependent receptor, plug domain superfamily PF555_17850 IPR039423 TonB-dependent receptor-like PF555_17850 IPR000531 TonB-dependent receptor-like, beta-barrel PF555_17850 IPR010916 TonB box, conserved site PF555_17850 IPR036942 TonB-dependent receptor-like, beta-barrel domain superfamily PF555_17850 IPR010917 TonB-dependent receptor, conserved site PF555_17850 IPR030149 TonB-dependent siderophore receptor FcuA/FatA PF555_17855 IPR033870 FatB domain PF555_17855 IPR002491 ABC transporter periplasmic binding domain PF555_17860 IPR027417 P-loop containing nucleoside triphosphate hydrolase PF555_17860 IPR017871 ABC transporter, conserved site PF555_17860 IPR003439 ABC transporter-like PF555_17860 IPR003593 AAA+ ATPase domain PF555_17865 IPR037294 ABC transporter, BtuC-like PF555_17865 IPR000522 ABC transporter, permease protein, BtuC-like PF555_17870 IPR037294 ABC transporter, BtuC-like PF555_17870 IPR000522 ABC transporter, permease protein, BtuC-like PF555_17875 IPR010071 Amino acid adenylation domain PF555_17875 IPR029058 Alpha/Beta hydrolase fold PF555_17875 IPR020802 Polyketide synthase, thioesterase domain PF555_17875 IPR020806 Polyketide synthase, phosphopantetheine-binding domain PF555_17875 IPR001242 Condensation domain PF555_17875 IPR023213 Chloramphenicol acetyltransferase-like domain superfamily PF555_17875 IPR042099 AMP-dependent synthetase-like superfamily PF555_17875 IPR000873 AMP-dependent synthetase/ligase PF555_17875 IPR020845 AMP-binding, conserved site PF555_17875 IPR025110 AMP-binding enzyme, C-terminal domain PF555_17875 IPR036736 ACP-like superfamily PF555_17875 IPR009081 Phosphopantetheine binding ACP domain PF555_17875 IPR001031 Thioesterase PF555_17880 IPR023213 Chloramphenicol acetyltransferase-like domain superfamily PF555_17880 IPR009081 Phosphopantetheine binding ACP domain PF555_17880 IPR020806 Polyketide synthase, phosphopantetheine-binding domain PF555_17880 IPR010060 Non-ribosomal peptide synthase PF555_17880 IPR001242 Condensation domain PF555_17880 IPR042099 AMP-dependent synthetase-like superfamily PF555_17880 IPR000873 AMP-dependent synthetase/ligase PF555_17880 IPR020845 AMP-binding, conserved site PF555_17880 IPR025110 AMP-binding enzyme, C-terminal domain PF555_17880 IPR036736 ACP-like superfamily PF555_17880 IPR006162 Phosphopantetheine attachment site PF555_17880 IPR010071 Amino acid adenylation domain PF555_17890 IPR039446 Transcriptional regulator DauR-like PF555_17890 IPR039445 Transcriptional regulator DauR-like, HTH domain PF555_17890 IPR013559 YheO-like PF555_17895 IPR000634 Serine/threonine dehydratase, pyridoxal-phosphate-binding site PF555_17895 IPR001926 Pyridoxal-phosphate dependent enzyme PF555_17895 IPR036052 Tryptophan synthase beta subunit-like PLP-dependent enzyme PF555_17900 IPR003829 Pirin, N-terminal domain PF555_17900 IPR011051 RmlC-like cupin domain superfamily PF555_17900 IPR014710 RmlC-like jelly roll fold PF555_17900 IPR041602 Quercetin 2,3-dioxygenase, C-terminal cupin domain PF555_17900 IPR012093 Pirin PF555_17920 IPR001647 DNA-binding HTH domain, TetR-type PF555_17920 IPR009057 Homeobox-like domain superfamily PF555_17920 IPR036271 Tetracyclin repressor-like, C-terminal domain superfamily PF555_17930 IPR024463 Transposase TnpC, homeodomain PF555_17930 IPR024474 Zinc-finger binding domain of transposase IS66 PF555_17930 IPR039552 Transposase IS66, C-terminal PF555_17930 IPR004291 Transposase, IS66 PF555_17940 IPR009057 Homeobox-like domain superfamily PF555_17955 IPR036397 Ribonuclease H superfamily PF555_17955 IPR012337 Ribonuclease H-like superfamily PF555_17955 IPR001584 Integrase, catalytic core PF555_17970 IPR000524 Transcription regulator HTH, GntR PF555_17970 IPR015424 Pyridoxal phosphate-dependent transferase PF555_17970 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 PF555_17970 IPR015421 Pyridoxal phosphate-dependent transferase, major domain PF555_17970 IPR036388 Winged helix-like DNA-binding domain superfamily PF555_17970 IPR036390 Winged helix DNA-binding domain superfamily PF555_17970 IPR004839 Aminotransferase, class I/classII PF555_17975 IPR001303 Class II aldolase/adducin N-terminal PF555_17975 IPR036409 Class II aldolase/adducin N-terminal domain superfamily PF555_17980 IPR020624 Schiff base-forming aldolase, conserved site PF555_17980 IPR013785 Aldolase-type TIM barrel PF555_17980 IPR005263 4-hydroxy-tetrahydrodipicolinate synthase, DapA PF555_17980 IPR002220 DapA-like PF555_17980 IPR020625 Schiff base-forming aldolase, active site PF555_17995 IPR023614 Porin domain superfamily PF555_17995 IPR005318 Outer membrane porin, bacterial PF555_18000 IPR008162 Inorganic pyrophosphatase PF555_18000 IPR036649 Inorganic pyrophosphatase superfamily PF555_18015 IPR042099 AMP-dependent synthetase-like superfamily PF555_18015 IPR000873 AMP-dependent synthetase/ligase PF555_18015 IPR020845 AMP-binding, conserved site PF555_18015 IPR025110 AMP-binding enzyme, C-terminal domain PF555_18020 IPR013758 DNA topoisomerase, type IIA, subunit A/ C-terminal, alpha-beta PF555_18020 IPR013757 Type IIA DNA topoisomerase subunit A, alpha-helical domain superfamily PF555_18020 IPR013760 DNA topoisomerase, type IIA-like domain superfamily PF555_18020 IPR035516 DNA gyrase/topoisomerase IV, subunit A, C-terminal PF555_18020 IPR005742 DNA topoisomerase IV, subunit A, Gram-negative PF555_18020 IPR002205 DNA topoisomerase, type IIA, subunit A/C-terminal PF555_18020 IPR006691 DNA gyrase/topoisomerase IV, subunit A, C-terminal repeat PF555_18025 IPR011701 Major facilitator superfamily PF555_18025 IPR020846 Major facilitator superfamily domain PF555_18025 IPR036259 MFS transporter superfamily PF555_18025 IPR005829 Sugar transporter, conserved site PF555_18030 IPR005115 Uncharacterised domain UPF0126 PF555_18035 IPR032710 NTF2-like domain superfamily PF555_18035 IPR023006 Uncharacterised protein family UPF0225 PF555_18035 IPR004027 SEC-C motif PF555_18040 IPR000644 CBS domain PF555_18040 IPR005170 Transporter-associated domain PF555_18040 IPR005496 Integral membrane protein TerC PF555_18040 IPR036318 FAD-binding, type PCMH-like superfamily PF555_18040 IPR016169 FAD-binding, type PCMH, subdomain 2 PF555_18045 IPR031100 LOG family PF555_18045 IPR005269 Cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG PF555_18050 IPR011701 Major facilitator superfamily PF555_18050 IPR036259 MFS transporter superfamily PF555_18050 IPR023721 Multidrug resistance protein MdtD PF555_18050 IPR020846 Major facilitator superfamily domain PF555_18060 IPR036775 DNA polymerase, Y-family, little finger domain superfamily PF555_18060 IPR017961 DNA polymerase, Y-family, little finger domain PF555_18060 IPR022880 DNA polymerase IV PF555_18060 IPR001126 UmuC domain PF555_18060 IPR024728 DNA polymerase type-Y, HhH motif PF555_18080 IPR006638 Elp3/MiaB/NifB PF555_18080 IPR020612 Methylthiotransferase, conserved site PF555_18080 IPR007197 Radical SAM PF555_18080 IPR023404 Radical SAM, alpha/beta horseshoe PF555_18080 IPR022946 Uncharacterised protein family UPF0313 PF555_18080 IPR013704 Uncharacterised protein family UPF0313, N-terminal PF555_18080 IPR024560 Uncharacterised protein family UPF0313, C-terminal PF555_18100 IPR008254 Flavodoxin/nitric oxide synthase PF555_18100 IPR037513 NAD(P)H dehydrogenase (quinone), prokaryotic PF555_18100 IPR005025 NADPH-dependent FMN reductase-like PF555_18100 IPR010089 Flavoprotein WrbA-like PF555_18100 IPR029039 Flavoprotein-like superfamily PF555_18110 IPR036052 Tryptophan synthase beta subunit-like PLP-dependent enzyme PF555_18110 IPR005856 Cysteine synthase PF555_18110 IPR005859 Cysteine synthase CysK PF555_18110 IPR001216 Cysteine synthase/cystathionine beta-synthase, pyridoxal-phosphate attachment site PF555_18110 IPR001926 Pyridoxal-phosphate dependent enzyme PF555_18170 IPR036821 Peptide deformylase superfamily PF555_18170 IPR023635 Peptide deformylase PF555_18180 IPR003488 DNA recombination-mediator protein A PF555_18180 IPR041614 DprA, winged helix domain PF555_18180 IPR036388 Winged helix-like DNA-binding domain superfamily PF555_18185 IPR017945 DHBP synthase RibB-like alpha/beta domain superfamily PF555_18185 IPR023535 Threonylcarbamoyl-AMP synthase PF555_18185 IPR006070 YrdC-like domain PF555_18190 IPR000620 EamA domain PF555_18195 IPR001647 DNA-binding HTH domain, TetR-type PF555_18195 IPR036271 Tetracyclin repressor-like, C-terminal domain superfamily PF555_18195 IPR009057 Homeobox-like domain superfamily PF555_18200 IPR020846 Major facilitator superfamily domain PF555_18200 IPR036259 MFS transporter superfamily PF555_18200 IPR011701 Major facilitator superfamily PF555_18210 IPR036249 Thioredoxin-like superfamily PF555_18210 IPR033674 Thioredoxin/glutathione peroxidase BtuE PF555_18210 IPR000889 Glutathione peroxidase PF555_18210 IPR029759 Glutathione peroxidase active site PF555_18210 IPR029760 Glutathione peroxidase conserved site PF555_18220 IPR022548 Domain of unknown function DUF2846 PF555_18220 IPR016596 Protein of unknown function UCP012335 PF555_18225 IPR036794 ATP synthase delta/epsilon subunit, C-terminal domain superfamily PF555_18225 IPR001469 ATP synthase, F1 complex, delta/epsilon subunit PF555_18225 IPR036771 F0F1 ATP synthase delta/epsilon subunit, N-terminal PF555_18225 IPR020546 ATP synthase, F1 complex, delta/epsilon subunit, N-terminal PF555_18230 IPR027417 P-loop containing nucleoside triphosphate hydrolase PF555_18230 IPR024034 ATPase, F1/V1 complex, beta/alpha subunit, C-terminal PF555_18230 IPR000194 ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain PF555_18230 IPR036121 ATPase, F1/V1/A1 complex, alpha/beta subunit, N-terminal domain superfamily PF555_18230 IPR004100 ATPase, F1/V1/A1 complex, alpha/beta subunit, N-terminal domain PF555_18230 IPR005722 ATP synthase, F1 complex, beta subunit PF555_18230 IPR003593 AAA+ ATPase domain PF555_18230 IPR020003 ATPase, alpha/beta subunit, nucleotide-binding domain, active site PF555_18235 IPR023632 ATP synthase, F1 complex, gamma subunit conserved site PF555_18235 IPR000131 ATP synthase, F1 complex, gamma subunit PF555_18235 IPR035968 ATP synthase, F1 complex, gamma subunit superfamily PF555_18240 IPR036121 ATPase, F1/V1/A1 complex, alpha/beta subunit, N-terminal domain superfamily PF555_18240 IPR023366 ATP synthase subunit alpha, N-terminal domain-like superfamily PF555_18240 IPR000793 ATP synthase, alpha subunit, C-terminal PF555_18240 IPR038376 ATP synthase, alpha subunit, C-terminal domain superfamily PF555_18240 IPR033732 ATP synthase, F1 complex, alpha subunit nucleotide-binding domain PF555_18240 IPR005294 ATP synthase, F1 complex, alpha subunit PF555_18240 IPR020003 ATPase, alpha/beta subunit, nucleotide-binding domain, active site PF555_18240 IPR004100 ATPase, F1/V1/A1 complex, alpha/beta subunit, N-terminal domain PF555_18240 IPR027417 P-loop containing nucleoside triphosphate hydrolase PF555_18240 IPR000194 ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain PF555_18245 IPR026015 F1F0 ATP synthase OSCP/delta subunit, N-terminal domain superfamily PF555_18245 IPR020781 ATPase, OSCP/delta subunit, conserved site PF555_18245 IPR000711 ATPase, OSCP/delta subunit PF555_18250 IPR028987 F-type ATP synthase subunit B-like, membrane domain superfamily PF555_18250 IPR002146 ATP synthase, F0 complex, subunit b/b', bacterial/chloroplast PF555_18250 IPR005864 ATP synthase, F0 complex, subunit b, bacterial PF555_18255 IPR038662 F1F0 ATP synthase subunit C superfamily PF555_18255 IPR005953 ATP synthase, F0 complex, subunit C, bacterial/chloroplast PF555_18255 IPR002379 V-ATPase proteolipid subunit C-like domain PF555_18255 IPR035921 F/V-ATP synthase subunit C superfamily PF555_18255 IPR000454 ATP synthase, F0 complex, subunit C PF555_18255 IPR020537 ATP synthase, F0 complex, subunit C, DCCD-binding site PF555_18260 IPR000568 ATP synthase, F0 complex, subunit A PF555_18260 IPR023011 ATP synthase, F0 complex, subunit A, active site PF555_18260 IPR035908 ATP synthase, F0 complex, subunit A superfamily PF555_18280 IPR017882 Zinc import ATP-binding protein ZnuC PF555_18280 IPR003439 ABC transporter-like PF555_18280 IPR017871 ABC transporter, conserved site PF555_18280 IPR027417 P-loop containing nucleoside triphosphate hydrolase PF555_18280 IPR003593 AAA+ ATPase domain PF555_18285 IPR001626 ABC transporter, TroCD-like PF555_18285 IPR037294 ABC transporter, BtuC-like PF555_18290 IPR004778 Homoserine/Threonine efflux protein PF555_18290 IPR001123 Amino acid exporter protein, LeuE-type PF555_18295 IPR011008 Dimeric alpha-beta barrel PF555_18295 IPR006314 Dyp-type peroxidase PF555_18305 IPR023667 NAD-dependent malic enzyme, proteobacteria PF555_18305 IPR036291 NAD(P)-binding domain superfamily PF555_18305 IPR001891 Malic oxidoreductase PF555_18305 IPR012301 Malic enzyme, N-terminal domain PF555_18305 IPR015884 Malic enzyme, conserved site PF555_18305 IPR012302 Malic enzyme, NAD-binding PF555_18305 IPR037062 Malic enzyme, N-terminal domain superfamily PF555_18310 IPR001278 Arginine-tRNA ligase PF555_18310 IPR005148 Arginyl tRNA synthetase N-terminal domain PF555_18310 IPR036695 Arginyl tRNA synthetase N-terminal domain superfamily PF555_18310 IPR035684 Arginyl-tRNA synthetase, catalytic core domain PF555_18310 IPR008909 DALR anticodon binding PF555_18310 IPR009080 Aminoacyl-tRNA synthetase, class Ia, anticodon-binding PF555_18330 IPR012093 Pirin PF555_18330 IPR008778 Pirin, C-terminal domain PF555_18330 IPR014710 RmlC-like jelly roll fold PF555_18330 IPR011051 RmlC-like cupin domain superfamily PF555_18330 IPR003829 Pirin, N-terminal domain PF555_18340 IPR005149 Transcription regulator PadR, N-terminal PF555_18340 IPR036388 Winged helix-like DNA-binding domain superfamily PF555_18340 IPR036390 Winged helix DNA-binding domain superfamily PF555_18345 IPR024172 Streptomycin 3''-adenylyltransferase PF555_18345 IPR025184 Domain of unknown function DUF4111 PF555_18345 IPR002934 Polymerase, nucleotidyl transferase domain PF555_18350 IPR029062 Class I glutamine amidotransferase-like PF555_18350 IPR017926 Glutamine amidotransferase PF555_18350 IPR001674 GMP synthase, C-terminal PF555_18350 IPR022955 GMP synthase PF555_18350 IPR025777 GMP synthetase ATP pyrophosphatase domain PF555_18350 IPR004739 GMP synthase, glutamine amidotransferase PF555_18350 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold PF555_18350 IPR022310 NAD/GMP synthase PF555_18355 IPR007383 Protein of unknown function DUF445 PF555_18355 IPR016991 Protein of unknown function UCP032178 PF555_18360 IPR032808 DoxX family PF555_18365 IPR032818 DedA family PF555_18365 IPR032816 SNARE associated Golgi protein PF555_18375 IPR032874 DDE domain PF555_18375 IPR001584 Integrase, catalytic core PF555_18375 IPR036397 Ribonuclease H superfamily PF555_18375 IPR012337 Ribonuclease H-like superfamily PF555_18380 IPR019646 Aminoglycoside-2''-adenylyltransferase PF555_18385 IPR024165 Aminoglycoside 3-phosphotransferase PF555_18385 IPR002575 Aminoglycoside phosphotransferase PF555_18385 IPR011009 Protein kinase-like domain superfamily PF555_18390 IPR030679 ABC-type amino acid transport system, ATPase component, HisP-type PF555_18390 IPR003439 ABC transporter-like PF555_18390 IPR017871 ABC transporter, conserved site PF555_18390 IPR027417 P-loop containing nucleoside triphosphate hydrolase PF555_18390 IPR003593 AAA+ ATPase domain PF555_18395 IPR036397 Ribonuclease H superfamily PF555_18395 IPR032874 DDE domain PF555_18395 IPR001584 Integrase, catalytic core PF555_18395 IPR012337 Ribonuclease H-like superfamily PF555_18410 IPR036388 Winged helix-like DNA-binding domain superfamily PF555_18410 IPR011663 UbiC transcription regulator-associated PF555_18410 IPR000524 Transcription regulator HTH, GntR PF555_18410 IPR010248 Histidine utilization repressor PF555_18410 IPR036390 Winged helix DNA-binding domain superfamily PF555_18410 IPR028978 Chorismate pyruvate-lyase/UbiC transcription regulator-associated domain superfamily PF555_18420 IPR027417 P-loop containing nucleoside triphosphate hydrolase PF555_18420 IPR011629 Cobalamin (vitamin B12) biosynthesis CobW-like, C-terminal PF555_18420 IPR003495 CobW/HypB/UreG, nucleotide-binding domain PF555_18430 IPR004840 Amino acid permease, conserved site PF555_18430 IPR004841 Amino acid permease/ SLC12A domain PF555_18440 IPR010987 Glutathione S-transferase, C-terminal-like PF555_18440 IPR036282 Glutathione S-transferase, C-terminal domain superfamily PF555_18440 IPR004045 Glutathione S-transferase, N-terminal PF555_18440 IPR040079 Glutathione Transferase family PF555_18440 IPR005955 Glutathione S-transferases, class Zeta PF555_18440 IPR034333 Glutathione S-transferases, class Zeta , N-terminal PF555_18440 IPR036249 Thioredoxin-like superfamily PF555_18440 IPR004046 Glutathione S-transferase, C-terminal PF555_18440 IPR034330 Glutathione S-transferases, class Zeta , C-terminal PF555_18445 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase PF555_18445 IPR004360 Glyoxalase/fosfomycin resistance/dioxygenase domain PF555_18445 IPR022858 Metallothiol transferase FosB PF555_18445 IPR037523 Vicinal oxygen chelate (VOC) domain PF555_18455 IPR041735 4-hydroxyphenylpyruvate dioxygenase, C-terminal PF555_18455 IPR041736 4-hydroxyphenylpyruvate dioxygenase, N-terminal PF555_18455 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase PF555_18455 IPR004360 Glyoxalase/fosfomycin resistance/dioxygenase domain PF555_18455 IPR037523 Vicinal oxygen chelate (VOC) domain PF555_18455 IPR005956 4-hydroxyphenylpyruvate dioxygenase PF555_18460 IPR007553 Domain of unknown function DUF523 PF555_18470 IPR038770 Sodium/solute symporter superfamily PF555_18470 IPR004710 Bile acid:sodium symporter PF555_18470 IPR002657 Bile acid:sodium symporter/arsenical resistance protein Acr3 PF555_18475 IPR036380 Isochorismatase-like superfamily PF555_18475 IPR000868 Isochorismatase-like PF555_18480 IPR020624 Schiff base-forming aldolase, conserved site PF555_18480 IPR020625 Schiff base-forming aldolase, active site PF555_18480 IPR002220 DapA-like PF555_18480 IPR005263 4-hydroxy-tetrahydrodipicolinate synthase, DapA PF555_18480 IPR013785 Aldolase-type TIM barrel PF555_18490 IPR018236 SAICAR synthetase, conserved site PF555_18490 IPR001636 Phosphoribosylaminoimidazole-succinocarboxamide synthase PF555_18490 IPR033934 Bacterial and archaeal 5-aminoimidazole-4-(N-succinylcarboxamide) ribonucleotide synthase PF555_18490 IPR028923 SAICAR synthetase/ADE2, N-terminal PF555_18500 IPR000292 Formate/nitrite transporter PF555_18500 IPR023271 Aquaporin-like PF555_18505 IPR032423 AAA C-terminal domain PF555_18505 IPR003959 ATPase, AAA-type, core PF555_18505 IPR003593 AAA+ ATPase domain PF555_18505 IPR021886 MgsA AAA+ ATPase C-terminal PF555_18505 IPR008921 DNA polymerase III, clamp loader complex, gamma/delta/delta subunit, C-terminal PF555_18505 IPR027417 P-loop containing nucleoside triphosphate hydrolase PF555_18510 IPR012938 Glucose/Sorbosone dehydrogenase PF555_18510 IPR011041 Soluble quinoprotein glucose/sorbosone dehydrogenase PF555_18510 IPR011042 Six-bladed beta-propeller, TolB-like PF555_18515 IPR005358 Putative zinc- or iron-chelating domain containing protein PF555_18515 IPR008228 Uncharacterised conserved protein UCP006173 PF555_18520 IPR009760 Protein of unknown function DUF1328 PF555_18535 IPR005760 A/G-specific adenine glycosylase MutY PF555_18535 IPR011257 DNA glycosylase PF555_18535 IPR004036 Endonuclease III-like, conserved site-2 PF555_18535 IPR003651 Endonuclease III-like, iron-sulphur cluster loop motif PF555_18535 IPR003265 HhH-GPD domain PF555_18535 IPR000445 Helix-hairpin-helix motif PF555_18535 IPR023170 Helix-turn-helix, base-excision DNA repair, C-terminal PF555_18535 IPR029119 MutY, C-terminal PF555_18535 IPR015797 NUDIX hydrolase-like domain superfamily PF555_18535 IPR004035 Endonuclease III, iron-sulphur binding site PF555_18550 IPR005019 Methyladenine glycosylase PF555_18550 IPR011257 DNA glycosylase PF555_18550 IPR004597 DNA-3-methyladenine glycosylase I PF555_18555 IPR013154 Alcohol dehydrogenase, N-terminal PF555_18555 IPR013149 Alcohol dehydrogenase, C-terminal PF555_18555 IPR020843 Polyketide synthase, enoylreductase domain PF555_18555 IPR036291 NAD(P)-binding domain superfamily PF555_18555 IPR011032 GroES-like superfamily PF555_18555 IPR029752 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain conserved site 1 PF555_18555 IPR002328 Alcohol dehydrogenase, zinc-type, conserved site PF555_18560 IPR004839 Aminotransferase, class I/classII PF555_18560 IPR036390 Winged helix DNA-binding domain superfamily PF555_18560 IPR036388 Winged helix-like DNA-binding domain superfamily PF555_18560 IPR000524 Transcription regulator HTH, GntR PF555_18560 IPR015421 Pyridoxal phosphate-dependent transferase, major domain PF555_18560 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 PF555_18560 IPR015424 Pyridoxal phosphate-dependent transferase PF555_18575 IPR036388 Winged helix-like DNA-binding domain superfamily PF555_18575 IPR000847 Transcription regulator HTH, LysR PF555_18575 IPR005119 LysR, substrate-binding PF555_18575 IPR036390 Winged helix DNA-binding domain superfamily PF555_18580 IPR020471 Aldo/keto reductase PF555_18580 IPR023210 NADP-dependent oxidoreductase domain PF555_18580 IPR018170 Aldo/keto reductase, conserved site PF555_18580 IPR036812 NADP-dependent oxidoreductase domain superfamily PF555_18585 IPR036259 MFS transporter superfamily PF555_18585 IPR011701 Major facilitator superfamily PF555_18585 IPR020846 Major facilitator superfamily domain PF555_18595 IPR022663 Dihydrodipicolinate reductase, C-terminal PF555_18595 IPR036291 NAD(P)-binding domain superfamily PF555_18595 IPR023940 Dihydrodipicolinate reductase PF555_18595 IPR022664 Dihydrodipicolinate reductase, conserved site PF555_18595 IPR000846 Dihydrodipicolinate reductase, N-terminal PF555_18605 IPR036869 Chaperone J-domain superfamily PF555_18605 IPR036410 Heat shock protein DnaJ, cysteine-rich domain superfamily PF555_18605 IPR001305 Heat shock protein DnaJ, cysteine-rich domain PF555_18605 IPR008971 HSP40/DnaJ peptide-binding PF555_18605 IPR018253 DnaJ domain, conserved site PF555_18605 IPR001623 DnaJ domain PF555_18605 IPR002939 Chaperone DnaJ, C-terminal PF555_18605 IPR012724 Chaperone DnaJ PF555_18620 IPR032874 DDE domain PF555_18620 IPR036397 Ribonuclease H superfamily PF555_18620 IPR012337 Ribonuclease H-like superfamily PF555_18620 IPR001584 Integrase, catalytic core PF555_18630 IPR031304 Transglycosylase SLT domain 2 PF555_18630 IPR011757 Lytic transglycosylase MltB PF555_18630 IPR023346 Lysozyme-like domain superfamily PF555_18635 IPR005875 Phosphoribosylaminoimidazole carboxylase, ATPase subunit PF555_18635 IPR040686 Phosphoribosylaminoimidazole carboxylase, C-terminal domain PF555_18635 IPR011054 Rudiment single hybrid motif PF555_18635 IPR011761 ATP-grasp fold PF555_18635 IPR003135 ATP-grasp fold, ATP-dependent carboxylate-amine ligase-type PF555_18635 IPR013815 ATP-grasp fold, subdomain 1 PF555_18635 IPR016185 Pre-ATP-grasp domain superfamily PF555_18640 IPR033747 Class I PurE PF555_18640 IPR000031 PurE domain PF555_18640 IPR035893 PurE domain superfamily PF555_18640 IPR024694 PurE, prokaryotic type PF555_18650 IPR013221 Mur ligase, central PF555_18650 IPR005757 Murein peptide ligase PF555_18650 IPR036565 Mur-like, catalytic domain superfamily PF555_18650 IPR004101 Mur ligase, C-terminal PF555_18650 IPR036615 Mur ligase, C-terminal domain superfamily PF555_18650 IPR000713 Mur ligase, N-terminal catalytic domain PF555_18660 IPR033879 Undecaprenyl-diphosphatase PF555_18660 IPR000326 Phosphatidic acid phosphatase type 2/haloperoxidase PF555_18660 IPR036938 Phosphatidic acid phosphatase type 2/haloperoxidase superfamily PF555_18665 IPR022369 Integral membrane protein TerC, riboswitch-linked PF555_18665 IPR005496 Integral membrane protein TerC PF555_18675 IPR016185 Pre-ATP-grasp domain superfamily PF555_18675 IPR005494 Glutathionylspermidine synthase, pre-ATP-grasp-like domain PF555_18685 IPR011059 Metal-dependent hydrolase, composite domain superfamily PF555_18685 IPR032466 Metal-dependent hydrolase PF555_18685 IPR006680 Amidohydrolase-related PF555_18685 IPR014311 Guanine deaminase PF555_18690 IPR005904 Hypoxanthine phosphoribosyl transferase PF555_18690 IPR000836 Phosphoribosyltransferase domain PF555_18690 IPR029057 Phosphoribosyltransferase-like PF555_18700 IPR017937 Thioredoxin, conserved site PF555_18700 IPR036249 Thioredoxin-like superfamily PF555_18700 IPR018950 Disulphide bond isomerase, DsbC/G, N-terminal PF555_18700 IPR009094 Disulphide bond isomerase DsbC/G, N-terminal domain superfamily PF555_18700 IPR012336 Thioredoxin-like fold PF555_18700 IPR033954 Disulphide bond isomerase, DsbC/G PF555_18705 IPR002524 Cation efflux protein PF555_18705 IPR027470 Cation efflux protein, cytoplasmic domain PF555_18705 IPR036837 Cation efflux protein, cytoplasmic domain superfamily PF555_18705 IPR027469 Cation efflux transmembrane domain superfamily PF555_18710 IPR038390 Metal-sensitive transcriptional repressor superfamily PF555_18710 IPR003735 Metal-sensitive transcriptional repressor PF555_18715 IPR027417 P-loop containing nucleoside triphosphate hydrolase PF555_18715 IPR025867 MnmE, helical domain PF555_18715 IPR027368 tRNA modification GTPase MnmE domain 2 PF555_18715 IPR031168 TrmE-type guanine nucleotide-binding domain PF555_18715 IPR006073 GTP binding domain PF555_18715 IPR018948 GTP-binding protein TrmE, N-terminal PF555_18715 IPR005225 Small GTP-binding protein domain PF555_18715 IPR004520 tRNA modification GTPase MnmE PF555_18715 IPR027266 GTP-binding protein TrmE/Glycine cleavage system T protein, domain 1 PF555_18720 IPR038221 YidC, periplasmic domain superfamily PF555_18720 IPR038210 Membrane insertase YidC, periplasmic domain PF555_18720 IPR001708 Membrane insertase YidC/ALB3/OXA1/COX18 PF555_18720 IPR028053 Membrane insertase YidC, N-terminal PF555_18720 IPR028055 Membrane insertase YidC/Oxa1, C-terminal PF555_18720 IPR019998 Membrane insertase YidC PF555_18725 IPR002696 Putative membrane protein insertion efficiency factor PF555_18730 IPR020568 Ribosomal protein S5 domain 2-type fold PF555_18730 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup PF555_18730 IPR000100 Ribonuclease P PF555_18730 IPR020539 Ribonuclease P, conserved site PF555_18735 IPR000271 Ribosomal protein L34 PF555_18735 IPR020939 Ribosomal protein L34, conserved site PF555_18795 IPR006171 TOPRIM domain PF555_18795 IPR034151 Bacterial DnaG primase, TOPRIM domain PF555_18795 IPR030846 DNA primase DnaG, bacteria PF555_18795 IPR036977 DNA Primase, CHC2-type zinc finger PF555_18795 IPR002694 Zinc finger, CHC2-type PF555_18795 IPR019475 DNA primase, DnaB-helicase binding domain PF555_18795 IPR037068 DNA primase, catalytic core, N-terminal domain superfamily PF555_18795 IPR006295 DNA primase, DnaG PF555_18795 IPR013264 DNA primase, catalytic core, N-terminal PF555_18835 IPR020590 Guanylate kinase, conserved site PF555_18835 IPR027417 P-loop containing nucleoside triphosphate hydrolase PF555_18835 IPR008144 Guanylate kinase-like domain PF555_18835 IPR008145 Guanylate kinase/L-type calcium channel beta subunit PF555_18835 IPR017665 Guanylate kinase PF555_18860 IPR011010 DNA breaking-rejoining enzyme, catalytic core PF555_18860 IPR013762 Integrase-like, catalytic domain superfamily PF555_18860 IPR002104 Integrase, catalytic domain PF555_18860 IPR010998 Integrase/recombinase, N-terminal PF555_18860 IPR004107 Integrase, SAM-like, N-terminal PF555_18860 IPR023009 Tyrosine recombinase XerC/XerD PF555_18895 IPR004805 DNA polymerase III, alpha subunit PF555_18895 IPR011708 Bacterial DNA polymerase III, alpha subunit, NTPase domain PF555_18895 IPR040982 DNA polymerase III alpha subunit finger domain PF555_18895 IPR029460 DNA polymerase, helix-hairpin-helix motif PF555_18895 IPR004013 PHP domain PF555_18895 IPR003141 Polymerase/histidinol phosphatase, N-terminal PF555_18895 IPR036895 Uracil-DNA glycosylase-like domain superfamily PF555_18915 IPR013765 DNA recombination and repair protein RecA PF555_18915 IPR023400 DNA recombination and repair protein RecA, C-terminal PF555_18915 IPR020587 DNA recombination and repair protein RecA, monomer-monomer interface PF555_18915 IPR020588 DNA recombination and repair protein RecA-like, ATP-binding domain PF555_18915 IPR003593 AAA+ ATPase domain PF555_18915 IPR020584 DNA recombination/repair protein RecA, conserved site PF555_18915 IPR027417 P-loop containing nucleoside triphosphate hydrolase PF555_18960 IPR027417 P-loop containing nucleoside triphosphate hydrolase PF555_18960 IPR038729 Rad50/SbcC-type AAA domain PF555_18985 IPR005144 ATP-cone domain PF555_18985 IPR013346 Ribonucleotide reductase, class I , alpha subunit PF555_18985 IPR000788 Ribonucleotide reductase large subunit, C-terminal PF555_18985 IPR013509 Ribonucleotide reductase large subunit, N-terminal PF555_18985 IPR039718 Ribonucleoside-diphosphate reductase large subunit PF555_18985 IPR008926 Ribonucleotide reductase R1 subunit, N-terminal PF555_18990 IPR009078 Ferritin-like superfamily PF555_18990 IPR012348 Ribonucleotide reductase-like PF555_18990 IPR033909 Ribonucleotide reductase small subunit PF555_18990 IPR030475 Ribonucleotide reductase small subunit, acitve site PF555_18990 IPR000358 Ribonucleotide reductase small subunit family PF555_19015 IPR008181 Deoxyuridine triphosphate nucleotidohydrolase PF555_19015 IPR033704 dUTPase, trimeric PF555_19015 IPR036157 dUTPase-like superfamily PF555_19015 IPR029054 dUTPase-like PF555_19100 IPR006054 DNA polymerase III epsilon subunit, exonuclease domain PF555_19100 IPR006309 DNA polymerase 3, epsilon subunit PF555_19100 IPR013520 Exonuclease, RNase T/DNA polymerase III PF555_19100 IPR012337 Ribonuclease H-like superfamily PF555_19100 IPR036397 Ribonuclease H superfamily PF555_19230 IPR003115 ParB/Sulfiredoxin PF555_19230 IPR036086 ParB/Sulfiredoxin superfamily PF555_19235 IPR018449 NIL domain PF555_19235 IPR003593 AAA+ ATPase domain PF555_19235 IPR026253 Methionine import ATP-binding protein MetN PF555_19235 IPR003439 ABC transporter-like PF555_19235 IPR017871 ABC transporter, conserved site PF555_19235 IPR017908 ABC transporter, methionine import, ATP-binding protein, MetN, C-terminal PF555_19235 IPR041701 Methionine import ATP-binding protein MetN, ATP-binding cassette domain PF555_19235 IPR027417 P-loop containing nucleoside triphosphate hydrolase PF555_19340 IPR000064 Endopeptidase, NLPC/P60 domain PF555_19340 IPR038765 Papain-like cysteine peptidase superfamily