locus-tag class description PF555_00005 PF00308 Bacterial dnaA protein PF555_00005 PF08299 Bacterial dnaA protein helix-turn-helix PF555_00005 PF11638 DnaA N-terminal domain PF555_00010 PF00712 DNA polymerase III beta subunit, N-terminal domain PF555_00010 PF02767 DNA polymerase III beta subunit, central domain PF555_00010 PF02768 DNA polymerase III beta subunit, C-terminal domain PF555_00015 PF02463 RecF/RecN/SMC N terminal domain PF555_00020 PF00204 DNA gyrase B PF555_00020 PF00986 DNA gyrase B subunit, carboxyl terminus PF555_00020 PF18053 DNA gyrase B subunit insert domain PF555_00020 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PF555_00020 PF01751 Toprim domain PF555_00030 PF09335 SNARE associated Golgi protein PF555_00035 PF00005 ABC transporter PF555_00035 PF12848 ABC transporter PF555_00055 PF01521 Iron-sulphur cluster biosynthesis PF555_00060 PF00561 alpha/beta hydrolase fold PF555_00065 PF03702 Anhydro-N-acetylmuramic acid kinase PF555_00070 PF00579 tRNA synthetases class I (W and Y) PF555_00110 PF00209 Sodium:neurotransmitter symporter family PF555_00120 PF01189 16S rRNA methyltransferase RsmB/F PF555_00120 PF01029 NusB family PF555_00125 PF02911 Formyl transferase, C-terminal domain PF555_00125 PF00551 Formyl transferase PF555_00130 PF00920 Dehydratase family PF555_00145 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family PF555_00145 PF03466 LysR substrate binding domain PF555_00150 PF00860 Permease family PF555_00155 PF00311 Phosphoenolpyruvate carboxylase PF555_00165 PF13610 DDE domain PF555_00180 PF13614 AAA domain PF555_00190 PF01722 BolA-like protein PF555_00210 PF13817 IS66 C-terminal element PF555_00210 PF13005 zinc-finger binding domain of transposase IS66 PF555_00210 PF13007 Transposase C of IS166 homeodomain PF555_00210 PF03050 Transposase IS66 family PF555_00230 PF16363 GDP-mannose 4,6 dehydratase PF555_00245 PF13193 AMP-binding enzyme C-terminal domain PF555_00245 PF00668 Condensation domain PF555_00245 PF00550 Phosphopantetheine attachment site PF555_00245 PF00501 AMP-binding enzyme PF555_00245 PF00975 Thioesterase domain PF555_00250 PF00550 Phosphopantetheine attachment site PF555_00250 PF16197 Ketoacyl-synthetase C-terminal extension PF555_00250 PF00109 Beta-ketoacyl synthase, N-terminal domain PF555_00250 PF02801 Beta-ketoacyl synthase, C-terminal domain PF555_00250 PF08242 Methyltransferase domain PF555_00250 PF14765 Polyketide synthase dehydratase PF555_00250 PF00975 Thioesterase domain PF555_00255 PF02771 Acyl-CoA dehydrogenase, N-terminal domain PF555_00255 PF02770 Acyl-CoA dehydrogenase, middle domain PF555_00255 PF00441 Acyl-CoA dehydrogenase, C-terminal domain PF555_00260 PF00501 AMP-binding enzyme PF555_00265 PF03472 Autoinducer binding domain PF555_00265 PF00196 Bacterial regulatory proteins, luxR family PF555_00275 PF00765 Autoinducer synthase PF555_00280 PF07690 Major Facilitator Superfamily PF555_00280 PF00083 Sugar (and other) transporter PF555_00285 PF00378 Enoyl-CoA hydratase/isomerase PF555_00290 PF00378 Enoyl-CoA hydratase/isomerase PF555_00295 PF00441 Acyl-CoA dehydrogenase, C-terminal domain PF555_00295 PF02770 Acyl-CoA dehydrogenase, middle domain PF555_00295 PF02771 Acyl-CoA dehydrogenase, N-terminal domain PF555_00300 PF13193 AMP-binding enzyme C-terminal domain PF555_00300 PF00501 AMP-binding enzyme PF555_00305 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase PF555_00305 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase PF555_00315 PF13610 DDE domain PF555_00330 PF00012 Hsp70 protein PF555_00335 PF01025 GrpE PF555_00340 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family PF555_00340 PF03466 LysR substrate binding domain PF555_00360 PF07859 alpha/beta hydrolase fold PF555_00365 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD PF555_00405 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase PF555_00410 PF01252 Signal peptidase (SPase) II PF555_00415 PF06827 Zinc finger found in FPG and IleRS PF555_00415 PF00133 tRNA synthetases class I (I, L, M and V) PF555_00415 PF08264 Anticodon-binding domain of tRNA PF555_00420 PF06574 FAD synthetase PF555_00420 PF01687 Riboflavin kinase PF555_00430 PF01048 Phosphorylase superfamily PF555_00435 PF08362 YcdC-like protein, C-terminal region PF555_00435 PF00440 Bacterial regulatory proteins, tetR family PF555_00440 PF00005 ABC transporter PF555_00445 PF00528 Binding-protein-dependent transport system inner membrane component PF555_00450 PF00296 Luciferase-like monooxygenase PF555_00455 PF09084 NMT1/THI5 like PF555_00460 PF09084 NMT1/THI5 like PF555_00465 PF00696 Amino acid kinase family PF555_00465 PF00583 Acetyltransferase (GNAT) family PF555_00480 PF00106 short chain dehydrogenase PF555_00485 PF13419 Haloacid dehalogenase-like hydrolase PF555_00495 PF01323 DSBA-like thioredoxin domain PF555_00500 PF00440 Bacterial regulatory proteins, tetR family PF555_00500 PF08360 QacR-like protein, C-terminal region PF555_00505 PF00440 Bacterial regulatory proteins, tetR family PF555_00510 PF00175 Oxidoreductase NAD-binding domain PF555_00515 PF00487 Fatty acid desaturase PF555_00520 PF01138 3' exoribonuclease family, domain 1 PF555_00520 PF03725 3' exoribonuclease family, domain 2 PF555_00540 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain PF555_00540 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain PF555_00545 PF01510 N-acetylmuramoyl-L-alanine amidase PF555_00550 PF03023 Lipid II flippase MurJ PF555_00555 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase PF555_00555 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase PF555_00560 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase PF555_00560 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase PF555_00565 PF13614 AAA domain PF555_00565 PF13807 G-rich domain on putative tyrosine kinase PF555_00565 PF02706 Chain length determinant protein PF555_00570 PF01451 Low molecular weight phosphotyrosine protein phosphatase PF555_00575 PF02563 Polysaccharide biosynthesis/export protein PF555_00575 PF10531 SLBB domain PF555_00575 PF18412 Outer-membrane lipoprotein Wza C-terminal domain PF555_00580 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain PF555_00580 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain PF555_00580 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain PF555_00585 PF02894 Oxidoreductase family, C-terminal alpha/beta domain PF555_00585 PF01408 Oxidoreductase family, NAD-binding Rossmann fold PF555_00590 PF00132 Bacterial transferase hexapeptide (six repeats) PF555_00595 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family PF555_00605 PF00132 Bacterial transferase hexapeptide (six repeats) PF555_00605 PF14602 Hexapeptide repeat of succinyl-transferase PF555_00605 PF12464 Maltose acetyltransferase PF555_00610 PF13439 Glycosyltransferase Family 4 PF555_00610 PF00534 Glycosyl transferases group 1 PF555_00625 PF00534 Glycosyl transferases group 1 PF555_00630 PF00535 Glycosyl transferase family 2 PF555_00635 PF02397 Bacterial sugar transferase PF555_00640 PF00483 Nucleotidyl transferase PF555_00645 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain PF555_00645 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain PF555_00645 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain PF555_00650 PF00342 Phosphoglucose isomerase PF555_00655 PF16363 GDP-mannose 4,6 dehydratase PF555_00660 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I PF555_00660 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II PF555_00660 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III PF555_00660 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain PF555_00665 PF02652 L-lactate permease PF555_00670 PF00392 Bacterial regulatory proteins, gntR family PF555_00670 PF07729 FCD domain PF555_00675 PF01070 FMN-dependent dehydrogenase PF555_00680 PF01565 FAD binding domain PF555_00680 PF09330 D-lactate dehydrogenase, membrane binding PF555_00685 PF00155 Aminotransferase class I and II PF555_00695 PF07729 FCD domain PF555_00695 PF00392 Bacterial regulatory proteins, gntR family PF555_00705 PF00285 Citrate synthase, C-terminal domain PF555_00710 PF00330 Aconitase family (aconitate hydratase) PF555_00710 PF00694 Aconitase C-terminal domain PF555_00740 PF00109 Beta-ketoacyl synthase, N-terminal domain PF555_00740 PF02801 Beta-ketoacyl synthase, C-terminal domain PF555_00750 PF10106 Uncharacterized protein conserved in bacteria (DUF2345) PF555_00750 PF04717 Type VI secretion system, phage-baseplate injector PF555_00750 PF13296 Putative type VI secretion system Rhs element Vgr PF555_00780 PF00849 RNA pseudouridylate synthase PF555_00795 PF00593 TonB dependent receptor PF555_00795 PF07715 TonB-dependent Receptor Plug Domain PF555_00805 PF01037 Lrp/AsnC ligand binding domain PF555_00810 PF01266 FAD dependent oxidoreductase PF555_00815 PF00842 Alanine racemase, C-terminal domain PF555_00815 PF01168 Alanine racemase, N-terminal domain PF555_00820 PF01042 Endoribonuclease L-PSP PF555_00830 PF13610 DDE domain PF555_00835 PF01175 Urocanase Rossmann-like domain PF555_00835 PF17392 Urocanase C-terminal domain PF555_00835 PF17391 Urocanase N-terminal domain PF555_00840 PF00221 Aromatic amino acid lyase PF555_00845 PF00324 Amino acid permease PF555_00850 PF01979 Amidohydrolase family PF555_00855 PF00491 Arginase family PF555_00870 PF01177 Asp/Glu/Hydantoin racemase PF555_00875 PF01380 SIS domain PF555_00880 PF12804 MobA-like NTP transferase domain PF555_00880 PF00132 Bacterial transferase hexapeptide (six repeats) PF555_00880 PF14602 Hexapeptide repeat of succinyl-transferase PF555_00885 PF04608 Phosphatidylglycerophosphatase A PF555_00890 PF02769 AIR synthase related protein, C-terminal domain PF555_00890 PF00586 AIR synthase related protein, N-terminal domain PF555_00895 PF01029 NusB family PF555_00900 PF00885 6,7-dimethyl-8-ribityllumazine synthase PF555_00905 PF00925 GTP cyclohydrolase II PF555_00905 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase PF555_00930 PF02580 D-Tyr-tRNA(Tyr) deacylase PF555_00935 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain PF555_00935 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family PF555_00940 PF00581 Rhodanese-like domain PF555_00945 PF02666 Phosphatidylserine decarboxylase PF555_00955 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PF555_00955 PF00989 PAS fold PF555_00955 PF11808 Phosphate regulon sensor protein PhoR PF555_00955 PF00512 His Kinase A (phospho-acceptor) domain PF555_00960 PF00072 Response regulator receiver domain PF555_00960 PF00486 Transcriptional regulatory protein, C terminal PF555_00970 PF00106 short chain dehydrogenase PF555_00975 PF01554 MatE PF555_00980 PF00155 Aminotransferase class I and II PF555_00985 PF04286 Protein of unknown function (DUF445) PF555_01000 PF04262 Glutamate-cysteine ligase PF555_01005 PF02600 Disulfide bond formation protein DsbB PF555_01010 PF13296 Putative type VI secretion system Rhs element Vgr PF555_01010 PF10106 Uncharacterized protein conserved in bacteria (DUF2345) PF555_01010 PF04717 Type VI secretion system, phage-baseplate injector PF555_01015 PF00182 Chitinase class I PF555_01030 PF05728 Uncharacterised protein family (UPF0227) PF555_01035 PF00986 DNA gyrase B subunit, carboxyl terminus PF555_01035 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PF555_01035 PF01751 Toprim domain PF555_01035 PF00204 DNA gyrase B PF555_01040 PF04115 Ureidoglycolate lyase PF555_01045 PF03561 Allantoicase repeat PF555_01050 PF01494 FAD binding domain PF555_01060 PF00860 Permease family PF555_01065 PF00576 HIUase/Transthyretin family PF555_01095 PF11412 Disulphide bond corrector protein DsbC PF555_01095 PF02683 Cytochrome C biogenesis protein transmembrane region PF555_01100 PF07694 5TMR of 5TMR-LYT PF555_01100 PF00990 Diguanylate cyclase, GGDEF domain PF555_01105 PF07859 alpha/beta hydrolase fold PF555_01115 PF03960 ArsC family PF555_01120 PF03372 Endonuclease/Exonuclease/phosphatase family PF555_01125 PF00156 Phosphoribosyl transferase domain PF555_01135 PF00593 TonB dependent receptor PF555_01135 PF07715 TonB-dependent Receptor Plug Domain PF555_01145 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain PF555_01145 PF02951 Prokaryotic glutathione synthetase, N-terminal domain PF555_01150 PF04101 Glycosyltransferase family 28 C-terminal domain PF555_01150 PF03033 Glycosyltransferase family 28 N-terminal domain PF555_01155 PF01225 Mur ligase family, catalytic domain PF555_01155 PF02875 Mur ligase family, glutamate ligase domain PF555_01155 PF08245 Mur ligase middle domain PF555_01160 PF07478 D-ala D-ala ligase C-terminus PF555_01160 PF01820 D-ala D-ala ligase N-terminus PF555_01165 PF03799 Cell division protein FtsQ PF555_01165 PF08478 POTRA domain, FtsQ-type PF555_01170 PF02491 SHS2 domain inserted in FTSA PF555_01175 PF12327 FtsZ family, C-terminal domain PF555_01175 PF00091 Tubulin/FtsZ family, GTPase domain PF555_01180 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase PF555_01190 PF01551 Peptidase family M23 PF555_01195 PF00456 Transketolase, thiamine diphosphate binding domain PF555_01195 PF17831 Pyruvate dehydrogenase E1 component middle domain PF555_01200 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) PF555_01200 PF00364 Biotin-requiring enzyme PF555_01200 PF02817 e3 binding domain PF555_01210 PF01169 Uncharacterized protein family UPF0016 PF555_01215 PF00593 TonB dependent receptor PF555_01215 PF07715 TonB-dependent Receptor Plug Domain PF555_01220 PF01613 Flavin reductase like domain PF555_01220 PF00258 Flavodoxin PF555_01225 PF03692 Putative zinc- or iron-chelating domain PF555_01230 PF00571 CBS domain PF555_01230 PF00478 IMP dehydrogenase / GMP reductase domain PF555_01235 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I PF555_01235 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III PF555_01235 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain PF555_01235 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II PF555_01240 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region PF555_01240 PF01243 Pyridoxamine 5'-phosphate oxidase PF555_01245 PF01368 DHH family PF555_01245 PF02272 DHHA1 domain PF555_01245 PF17768 RecJ OB domain PF555_01270 PF00724 NADH:flavin oxidoreductase / NADH oxidase family PF555_01275 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) PF555_01280 PF04452 RNA methyltransferase PF555_01285 PF00924 Mechanosensitive ion channel PF555_01295 PF13193 AMP-binding enzyme C-terminal domain PF555_01295 PF00501 AMP-binding enzyme PF555_01295 PF16177 Acetyl-coenzyme A synthetase N-terminus PF555_01300 PF00857 Isochorismatase family PF555_01305 PF01037 Lrp/AsnC ligand binding domain PF555_01310 PF00296 Luciferase-like monooxygenase PF555_01315 PF03358 NADPH-dependent FMN reductase PF555_01320 PF00196 Bacterial regulatory proteins, luxR family PF555_01320 PF00072 Response regulator receiver domain PF555_01330 PF01627 Hpt domain PF555_01330 PF00072 Response regulator receiver domain PF555_01330 PF00672 HAMP domain PF555_01330 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PF555_01330 PF00512 His Kinase A (phospho-acceptor) domain PF555_01335 PF04341 Protein of unknown function, DUF485 PF555_01340 PF00474 Sodium:solute symporter family PF555_01350 PF02028 BCCT, betaine/carnitine/choline family transporter PF555_01360 PF00990 Diguanylate cyclase, GGDEF domain PF555_01365 PF17755 UvrA DNA-binding domain PF555_01365 PF17760 UvrA interaction domain PF555_01370 PF16925 Tetracyclin repressor-like, C-terminal domain PF555_01370 PF00440 Bacterial regulatory proteins, tetR family PF555_01375 PF00107 Zinc-binding dehydrogenase PF555_01375 PF08240 Alcohol dehydrogenase GroES-like domain PF555_01385 PF06942 GlpM protein PF555_01390 PF03070 TENA/THI-4/PQQC family PF555_01390 PF08543 Phosphomethylpyrimidine kinase PF555_01390 PF02581 Thiamine monophosphate synthase PF555_01400 PF07690 Major Facilitator Superfamily PF555_01405 PF00436 Single-strand binding protein family PF555_01415 PF03591 AzlC protein PF555_01425 PF00324 Amino acid permease PF555_01430 PF00392 Bacterial regulatory proteins, gntR family PF555_01430 PF00155 Aminotransferase class I and II PF555_01435 PF00202 Aminotransferase class-III PF555_01440 PF00171 Aldehyde dehydrogenase family PF555_01445 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family PF555_01450 PF00857 Isochorismatase family PF555_01455 PF02678 Pirin PF555_01455 PF05726 Pirin C-terminal cupin domain PF555_01465 PF01593 Flavin containing amine oxidoreductase PF555_01485 PF07690 Major Facilitator Superfamily PF555_01490 PF03466 LysR substrate binding domain PF555_01490 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family PF555_01510 PF00248 Aldo/keto reductase family PF555_01515 PF02311 AraC-like ligand binding domain PF555_01515 PF12833 Helix-turn-helix domain PF555_01540 PF01638 HxlR-like helix-turn-helix PF555_01545 PF02525 Flavodoxin-like fold PF555_01560 PF02705 K+ potassium transporter PF555_01585 PF00230 Major intrinsic protein PF555_01600 PF00977 Histidine biosynthesis protein PF555_01605 PF01636 Phosphotransferase enzyme family PF555_01640 PF00977 Histidine biosynthesis protein PF555_01655 PF00117 Glutamine amidotransferase class-I PF555_01660 PF00475 Imidazoleglycerol-phosphate dehydratase PF555_01680 PF00583 Acetyltransferase (GNAT) family PF555_01685 PF13336 Acetyl-CoA hydrolase/transferase C-terminal domain PF555_01685 PF02550 Acetyl-CoA hydrolase/transferase N-terminal domain PF555_01695 PF00672 HAMP domain PF555_01695 PF00512 His Kinase A (phospho-acceptor) domain PF555_01695 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PF555_01700 PF00072 Response regulator receiver domain PF555_01700 PF00486 Transcriptional regulatory protein, C terminal PF555_01705 PF16921 Tex protein YqgF-like domain PF555_01705 PF17674 HHH domain PF555_01705 PF00575 S1 RNA binding domain PF555_01705 PF09371 Tex-like protein N-terminal domain PF555_01710 PF00916 Sulfate permease family PF555_01710 PF01740 STAS domain PF555_01715 PF00106 short chain dehydrogenase PF555_01720 PF01053 Cys/Met metabolism PLP-dependent enzyme PF555_01725 PF12848 ABC transporter PF555_01725 PF00005 ABC transporter PF555_01750 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion PF555_01750 PF00529 HlyD membrane-fusion protein of T1SS PF555_01755 PF00873 AcrB/AcrD/AcrF family PF555_01760 PF01545 Cation efflux family PF555_01790 PF00324 Amino acid permease PF555_01805 PF00749 tRNA synthetases class I (E and Q), catalytic domain PF555_01820 PF01795 MraW methylase family PF555_01830 PF03717 Penicillin-binding Protein dimerisation domain PF555_01830 PF00905 Penicillin binding protein transpeptidase domain PF555_01835 PF08245 Mur ligase middle domain PF555_01835 PF01225 Mur ligase family, catalytic domain PF555_01835 PF02875 Mur ligase family, glutamate ligase domain PF555_01840 PF01225 Mur ligase family, catalytic domain PF555_01840 PF08245 Mur ligase middle domain PF555_01840 PF02875 Mur ligase family, glutamate ligase domain PF555_01845 PF00953 Glycosyl transferase family 4 PF555_01855 PF13847 Methyltransferase domain PF555_01860 PF17092 Penicillin-binding protein OB-like domain PF555_01860 PF00905 Penicillin binding protein transpeptidase domain PF555_01860 PF00912 Transglycosylase PF555_01865 PF11104 Type IV pilus assembly protein PilM; PF555_01870 PF05137 Fimbrial assembly protein (PilN) PF555_01875 PF04350 Pilus assembly protein, PilO PF555_01885 PF11741 AMIN domain PF555_01885 PF00263 Bacterial type II and III secretion system protein PF555_01885 PF03958 Bacterial type II/III secretion system short domain PF555_01885 PF07660 Secretin and TonB N terminus short domain PF555_01890 PF01202 Shikimate kinase PF555_01895 PF01761 3-dehydroquinate synthase PF555_01905 PF00310 Glutamine amidotransferases class-II PF555_01905 PF04898 Glutamate synthase central domain PF555_01905 PF01645 Conserved region in glutamate synthase PF555_01905 PF01493 GXGXG motif PF555_01910 PF07992 Pyridine nucleotide-disulphide oxidoreductase PF555_01910 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster PF555_01920 PF04011 LemA family PF555_01925 PF04536 TPM domain PF555_01935 PF07963 Prokaryotic N-terminal methylation motif PF555_01935 PF00114 Pilin (bacterial filament) PF555_01945 PF04932 O-Antigen ligase PF555_01945 PF11846 Virulence factor membrane-bound polymerase, C-terminal PF555_01945 PF15864 Protein glycosylation ligase PF555_01950 PF00210 Ferritin-like domain PF555_01955 PF04324 BFD-like [2Fe-2S] binding domain PF555_01960 PF01042 Endoribonuclease L-PSP PF555_01965 PF13291 ACT domain PF555_01965 PF04607 Region found in RelA / SpoT proteins PF555_01965 PF02824 TGS domain PF555_01975 PF01192 RNA polymerase Rpb6 PF555_01980 PF00625 Guanylate kinase PF555_01985 PF02401 LytB protein PF555_02025 PF00886 Ribosomal protein S16 PF555_02030 PF01782 RimM N-terminal domain PF555_02030 PF05239 PRC-barrel domain PF555_02035 PF01746 tRNA (Guanine-1)-methyltransferase PF555_02040 PF01245 Ribosomal protein L19 PF555_02045 PF00561 alpha/beta hydrolase fold PF555_02050 PF03280 Proteobacterial lipase chaperone protein PF555_02055 PF16198 tRNA pseudouridylate synthase B C-terminal domain PF555_02055 PF01509 TruB family pseudouridylate synthase (N terminal domain) PF555_02055 PF09157 Pseudouridine synthase II TruB, C-terminal PF555_02060 PF01925 Sulfite exporter TauE/SafE PF555_02070 PF00892 EamA-like transporter family PF555_02075 PF00892 EamA-like transporter family PF555_02080 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain PF555_02080 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain PF555_02085 PF02913 FAD linked oxidases, C-terminal domain PF555_02085 PF01565 FAD binding domain PF555_02100 PF03992 Antibiotic biosynthesis monooxygenase PF555_02105 PF02525 Flavodoxin-like fold PF555_02115 PF07690 Major Facilitator Superfamily PF555_02120 PF12805 FUSC-like inner membrane protein yccS PF555_02125 PF00080 Copper/zinc superoxide dismutase (SODC) PF555_02130 PF01594 AI-2E family transporter PF555_02135 PF13614 AAA domain PF555_02155 PF08241 Methyltransferase domain PF555_02165 PF00324 Amino acid permease PF555_02170 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase PF555_02170 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain PF555_02175 PF00202 Aminotransferase class-III PF555_02180 PF04958 Arginine N-succinyltransferase beta subunit PF555_02185 PF00171 Aldehyde dehydrogenase family PF555_02190 PF04996 Succinylarginine dihydrolase PF555_02195 PF04952 Succinylglutamate desuccinylase / Aspartoacylase family PF555_02210 PF05922 Peptidase inhibitor I9 PF555_02210 PF00082 Subtilase family PF555_02225 PF03466 LysR substrate binding domain PF555_02225 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family PF555_02230 PF00892 EamA-like transporter family PF555_02250 PF13737 Transposase DDE domain PF555_02260 PF02092 Glycyl-tRNA synthetase beta subunit PF555_02260 PF05746 DALR anticodon binding domain PF555_02265 PF02091 Glycyl-tRNA synthetase alpha subunit PF555_02270 PF07690 Major Facilitator Superfamily PF555_02285 PF00571 CBS domain PF555_02290 PF04024 PspC domain PF555_02300 PF12806 Acetyl-CoA dehydrogenase C-terminal like PF555_02300 PF00441 Acyl-CoA dehydrogenase, C-terminal domain PF555_02300 PF02770 Acyl-CoA dehydrogenase, middle domain PF555_02300 PF02771 Acyl-CoA dehydrogenase, N-terminal domain PF555_02310 PF18317 Shikimate 5'-dehydrogenase C-terminal domain PF555_02310 PF01488 Shikimate / quinate 5-dehydrogenase PF555_02310 PF08501 Shikimate dehydrogenase substrate binding domain PF555_02315 PF01218 Coproporphyrinogen III oxidase PF555_02320 PF00925 GTP cyclohydrolase II PF555_02325 PF02780 Transketolase, C-terminal domain PF555_02325 PF02779 Transketolase, pyrimidine binding domain PF555_02325 PF13292 1-deoxy-D-xylulose-5-phosphate synthase PF555_02330 PF00459 Inositol monophosphatase family PF555_02335 PF03880 DbpA RNA binding domain PF555_02335 PF00270 DEAD/DEAH box helicase PF555_02335 PF12343 Cold shock protein DEAD box A PF555_02335 PF00271 Helicase conserved C-terminal domain PF555_02345 PF00005 ABC transporter PF555_02350 PF02405 Permease MlaE PF555_02360 PF05494 MlaC protein PF555_02370 PF01544 CorA-like Mg2+ transporter protein PF555_02375 PF03641 Possible lysine decarboxylase PF555_02380 PF00293 NUDIX domain PF555_02385 PF00156 Phosphoribosyl transferase domain PF555_02390 PF00271 Helicase conserved C-terminal domain PF555_02390 PF17191 RecG wedge domain PF555_02390 PF00270 DEAD/DEAH box helicase PF555_02405 PF01553 Acyltransferase PF555_02415 PF00375 Sodium:dicarboxylate symporter family PF555_02425 PF01926 50S ribosome-binding GTPase PF555_02430 PF02082 Transcriptional regulator PF555_02435 PF00970 Oxidoreductase FAD-binding domain PF555_02435 PF00042 Globin PF555_02435 PF00175 Oxidoreductase NAD-binding domain PF555_02445 PF05872 Bacterial protein of unknown function (DUF853) PF555_02450 PF01053 Cys/Met metabolism PLP-dependent enzyme PF555_02455 PF00117 Glutamine amidotransferase class-I PF555_02460 PF00338 Ribosomal protein S10p/S20e PF555_02465 PF00297 Ribosomal protein L3 PF555_02470 PF00573 Ribosomal protein L4/L1 family PF555_02475 PF00276 Ribosomal protein L23 PF555_02480 PF03947 Ribosomal Proteins L2, C-terminal domain PF555_02480 PF00181 Ribosomal Proteins L2, RNA binding domain PF555_02485 PF00203 Ribosomal protein S19 PF555_02490 PF00237 Ribosomal protein L22p/L17e PF555_02500 PF00252 Ribosomal protein L16p/L10e PF555_02505 PF00831 Ribosomal L29 protein PF555_02510 PF00366 Ribosomal protein S17 PF555_02515 PF00238 Ribosomal protein L14p/L23e PF555_02520 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 PF555_02520 PF00467 KOW motif PF555_02525 PF00673 ribosomal L5P family C-terminus PF555_02525 PF00281 Ribosomal protein L5 PF555_02530 PF00253 Ribosomal protein S14p/S29e PF555_02535 PF00410 Ribosomal protein S8 PF555_02540 PF00347 Ribosomal protein L6 PF555_02545 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast PF555_02550 PF03719 Ribosomal protein S5, C-terminal domain PF555_02550 PF00333 Ribosomal protein S5, N-terminal domain PF555_02555 PF00327 Ribosomal protein L30p/L7e PF555_02560 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A PF555_02565 PF00344 SecY translocase PF555_02570 PF00444 Ribosomal protein L36 PF555_02575 PF00416 Ribosomal protein S13/S18 PF555_02580 PF00411 Ribosomal protein S11 PF555_02585 PF00163 Ribosomal protein S4/S9 N-terminal domain PF555_02585 PF01479 S4 domain PF555_02590 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain PF555_02590 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain PF555_02590 PF01000 RNA polymerase Rpb3/RpoA insert domain PF555_02595 PF01196 Ribosomal protein L17 PF555_02600 PF00743 Flavin-binding monooxygenase-like PF555_02605 PF02770 Acyl-CoA dehydrogenase, middle domain PF555_02605 PF02771 Acyl-CoA dehydrogenase, N-terminal domain PF555_02605 PF00441 Acyl-CoA dehydrogenase, C-terminal domain PF555_02610 PF03937 Flavinator of succinate dehydrogenase PF555_02640 PF09526 Probable metal-binding protein (DUF2387) PF555_02645 PF01432 Peptidase family M3 PF555_02650 PF17876 Cold shock domain PF555_02650 PF08461 Ribonuclease R winged-helix domain PF555_02650 PF08206 Ribonuclease B OB domain PF555_02650 PF00575 S1 RNA binding domain PF555_02650 PF00773 RNB domain PF555_02695 PF01557 Fumarylacetoacetate (FAA) hydrolase family PF555_02700 PF12833 Helix-turn-helix domain PF555_02705 PF00892 EamA-like transporter family PF555_02710 PF03631 Virulence factor BrkB PF555_02715 PF03358 NADPH-dependent FMN reductase PF555_02740 PF02130 Uncharacterized protein family UPF0054 PF555_02745 PF02562 PhoH-like protein PF555_02750 PF04055 Radical SAM superfamily PF555_02750 PF01938 TRAM domain PF555_02750 PF00919 Uncharacterized protein family UPF0004 PF555_02755 PF01464 Transglycosylase SLT domain PF555_02755 PF10145 Phage-related minor tail protein PF555_02755 PF01551 Peptidase family M23 PF555_02765 PF00056 lactate/malate dehydrogenase, NAD binding domain PF555_02765 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain PF555_02785 PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ PF555_02790 PF01066 CDP-alcohol phosphatidyltransferase PF555_02835 PF02770 Acyl-CoA dehydrogenase, middle domain PF555_02835 PF00441 Acyl-CoA dehydrogenase, C-terminal domain PF555_02835 PF02771 Acyl-CoA dehydrogenase, N-terminal domain PF555_02840 PF17932 Tetracyclin repressor-like, C-terminal domain PF555_02840 PF00440 Bacterial regulatory proteins, tetR family PF555_02855 PF01039 Carboxyl transferase domain PF555_02860 PF02771 Acyl-CoA dehydrogenase, N-terminal domain PF555_02860 PF00441 Acyl-CoA dehydrogenase, C-terminal domain PF555_02860 PF02770 Acyl-CoA dehydrogenase, middle domain PF555_02870 PF02785 Biotin carboxylase C-terminal domain PF555_02870 PF00289 Biotin carboxylase, N-terminal domain PF555_02870 PF00364 Biotin-requiring enzyme PF555_02870 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain PF555_02880 PF04386 Stringent starvation protein B PF555_02885 PF13417 Glutathione S-transferase, N-terminal domain PF555_02885 PF00043 Glutathione S-transferase, C-terminal domain PF555_02890 PF00380 Ribosomal protein S9/S16 PF555_02895 PF00572 Ribosomal protein L13 PF555_02900 PF04166 Pyridoxal phosphate biosynthetic protein PdxA PF555_02905 PF00398 Ribosomal RNA adenine dimethylase PF555_02910 PF00149 Calcineurin-like phosphoesterase PF555_02930 PF16360 GTP-binding GTPase Middle Region PF555_02930 PF13167 GTP-binding GTPase N-terminal PF555_02930 PF01926 50S ribosome-binding GTPase PF555_02940 PF13091 PLD-like domain PF555_02945 PF00149 Calcineurin-like phosphoesterase PF555_02945 PF10518 TAT (twin-arginine translocation) pathway signal sequence PF555_02950 PF01389 OmpA-like transmembrane domain PF555_02950 PF00691 OmpA family PF555_02955 PF00990 Diguanylate cyclase, GGDEF domain PF555_02955 PF17152 Periplasmic sensor domain PF555_02990 PF07992 Pyridine nucleotide-disulphide oxidoreductase PF555_02990 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain PF555_03000 PF00753 Metallo-beta-lactamase superfamily PF555_03000 PF04273 Putative phosphatase (DUF442) PF555_03005 PF00561 alpha/beta hydrolase fold PF555_03010 PF00085 Thioredoxin PF555_03015 PF03061 Thioesterase superfamily PF555_03025 PF04461 Protein of unknown function (DUF520) PF555_03035 PF01266 FAD dependent oxidoreductase PF555_03035 PF05430 S-adenosyl-L-methionine-dependent methyltransferase PF555_03045 PF03795 YCII-related domain PF555_03050 PF04279 Intracellular septation protein A PF555_03055 PF02811 PHP domain PF555_03060 PF01062 Bestrophin, RFP-TM, chloride channel PF555_03065 PF04002 RadC-like JAB domain PF555_03070 PF04127 DNA / pantothenate metabolism flavoprotein PF555_03070 PF02441 Flavoprotein PF555_03075 PF07549 SecD/SecF GG Motif PF555_03075 PF02355 Protein export membrane protein PF555_03080 PF07549 SecD/SecF GG Motif PF555_03080 PF13721 SecD export protein N-terminal TM region PF555_03080 PF02355 Protein export membrane protein PF555_03085 PF02699 Preprotein translocase subunit PF555_03090 PF01702 Queuine tRNA-ribosyltransferase PF555_03105 PF02547 Queuosine biosynthesis protein PF555_03115 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PF555_03115 PF00512 His Kinase A (phospho-acceptor) domain PF555_03115 PF07689 KaiB domain PF555_03120 PF08335 GlnD PII-uridylyltransferase PF555_03120 PF03710 Glutamate-ammonia ligase adenylyltransferase PF555_03125 PF01063 Amino-transferase class IV PF555_03140 PF01522 Polysaccharide deacetylase PF555_03145 PF00535 Glycosyl transferase family 2 PF555_03150 PF00534 Glycosyl transferases group 1 PF555_03150 PF13439 Glycosyltransferase Family 4 PF555_03175 PF17101 Stealth protein CR1, conserved region 1 PF555_03175 PF11380 Stealth protein CR2, conserved region 2 PF555_03175 PF17102 Stealth protein CR3, conserved region 3 PF555_03180 PF01336 OB-fold nucleic acid binding domain PF555_03180 PF00152 tRNA synthetases class II (D, K and N) PF555_03180 PF02938 GAD domain PF555_03190 PF00593 TonB dependent receptor PF555_03190 PF07715 TonB-dependent Receptor Plug Domain PF555_03210 PF06146 Phosphate-starvation-inducible E PF555_03215 PF02771 Acyl-CoA dehydrogenase, N-terminal domain PF555_03215 PF00441 Acyl-CoA dehydrogenase, C-terminal domain PF555_03215 PF12806 Acetyl-CoA dehydrogenase C-terminal like PF555_03215 PF02770 Acyl-CoA dehydrogenase, middle domain PF555_03220 PF00441 Acyl-CoA dehydrogenase, C-terminal domain PF555_03220 PF12806 Acetyl-CoA dehydrogenase C-terminal like PF555_03220 PF02770 Acyl-CoA dehydrogenase, middle domain PF555_03220 PF02771 Acyl-CoA dehydrogenase, N-terminal domain PF555_03230 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PF555_03230 PF00512 His Kinase A (phospho-acceptor) domain PF555_03230 PF00672 HAMP domain PF555_03235 PF00072 Response regulator receiver domain PF555_03235 PF00486 Transcriptional regulatory protein, C terminal PF555_03240 PF02696 Uncharacterized ACR, YdiU/UPF0061 family PF555_03260 PF01923 Cobalamin adenosyltransferase PF555_03265 PF07715 TonB-dependent Receptor Plug Domain PF555_03265 PF00593 TonB dependent receptor PF555_03270 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase PF555_03275 PF00291 Pyridoxal-phosphate dependent enzyme PF555_03300 PF00290 Tryptophan synthase alpha chain PF555_03305 PF01039 Carboxyl transferase domain PF555_03310 PF02875 Mur ligase family, glutamate ligase domain PF555_03310 PF08245 Mur ligase middle domain PF555_03325 PF00753 Metallo-beta-lactamase superfamily PF555_03330 PF00578 AhpC/TSA family PF555_03330 PF10417 C-terminal domain of 1-Cys peroxiredoxin PF555_03335 PF07517 SecA DEAD-like domain PF555_03335 PF01043 SecA preprotein cross-linking domain PF555_03335 PF07516 SecA Wing and Scaffold domain PF555_03335 PF02810 SEC-C motif PF555_03345 PF07690 Major Facilitator Superfamily PF555_03345 PF00083 Sugar (and other) transporter PF555_03350 PF03006 Haemolysin-III related PF555_03375 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain PF555_03375 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain PF555_03375 PF00378 Enoyl-CoA hydratase/isomerase PF555_03380 PF00108 Thiolase, N-terminal domain PF555_03380 PF02803 Thiolase, C-terminal domain PF555_03385 PF02311 AraC-like ligand binding domain PF555_03385 PF12833 Helix-turn-helix domain PF555_03390 PF02515 CoA-transferase family III PF555_03395 PF04966 Carbohydrate-selective porin, OprB family PF555_03400 PF01011 PQQ enzyme repeat PF555_03405 PF01077 Nitrite and sulphite reductase 4Fe-4S domain PF555_03405 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain PF555_03415 PF00893 Small Multidrug Resistance protein PF555_03425 PF02803 Thiolase, C-terminal domain PF555_03425 PF00108 Thiolase, N-terminal domain PF555_03435 PF13505 Outer membrane protein beta-barrel domain PF555_03435 PF00691 OmpA family PF555_03445 PF01139 tRNA-splicing ligase RtcB PF555_03450 PF00324 Amino acid permease PF555_03455 PF05175 Methyltransferase small domain PF555_03455 PF08468 Methyltransferase small domain N-terminal PF555_03460 PF00860 Permease family PF555_03465 PF00679 Elongation factor G C-terminus PF555_03465 PF00009 Elongation factor Tu GTP binding domain PF555_03465 PF03144 Elongation factor Tu domain 2 PF555_03470 PF01741 Large-conductance mechanosensitive channel, MscL PF555_03485 PF06827 Zinc finger found in FPG and IleRS PF555_03485 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain PF555_03485 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain PF555_03490 PF02245 Methylpurine-DNA glycosylase (MPG) PF555_03495 PF07715 TonB-dependent Receptor Plug Domain PF555_03495 PF00593 TonB dependent receptor PF555_03500 PF00724 NADH:flavin oxidoreductase / NADH oxidase family PF555_03515 PF10411 Disulfide bond isomerase protein N-terminus PF555_03515 PF13098 Thioredoxin-like domain PF555_03520 PF01571 Aminomethyltransferase folate-binding domain PF555_03530 PF04343 Protein of unknown function, DUF488 PF555_03535 PF08274 PhnA Zinc-Ribbon PF555_03535 PF03831 PhnA domain PF555_03540 PF07411 Domain of unknown function (DUF1508) PF555_03545 PF03129 Anticodon binding domain PF555_03545 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) PF555_03545 PF04073 Aminoacyl-tRNA editing domain PF555_03550 PF00873 AcrB/AcrD/AcrF family PF555_03565 PF00072 Response regulator receiver domain PF555_03570 PF00072 Response regulator receiver domain PF555_03575 PF01584 CheW-like domain PF555_03580 PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term PF555_03580 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain PF555_03585 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PF555_03585 PF01627 Hpt domain PF555_03585 PF00072 Response regulator receiver domain PF555_03585 PF01584 CheW-like domain PF555_03595 PF07687 Peptidase dimerisation domain PF555_03595 PF01546 Peptidase family M20/M25/M40 PF555_03600 PF08085 Entericidin EcnA/B family PF555_03610 PF04304 Protein of unknown function (DUF454) PF555_03615 PF17969 L,D-transpeptidase C-terminal domain PF555_03615 PF03734 L,D-transpeptidase catalytic domain PF555_03655 PF00258 Flavodoxin PF555_03655 PF00667 FAD binding domain PF555_03655 PF00175 Oxidoreductase NAD-binding domain PF555_03665 PF12805 FUSC-like inner membrane protein yccS PF555_03670 PF07690 Major Facilitator Superfamily PF555_03675 PF00881 Nitroreductase family PF555_03690 PF01235 Sodium:alanine symporter family PF555_03695 PF01734 Patatin-like phospholipase PF555_03700 PF13291 ACT domain PF555_03700 PF00291 Pyridoxal-phosphate dependent enzyme PF555_03705 PF05992 SbmA/BacA-like family PF555_03730 PF02934 GatB/GatE catalytic domain PF555_03730 PF02637 GatB domain PF555_03735 PF01425 Amidase PF555_03740 PF02686 Glu-tRNAGln amidotransferase C subunit PF555_03750 PF04085 rod shape-determining protein MreC PF555_03755 PF04093 rod shape-determining protein MreD PF555_03760 PF02545 Maf-like protein PF555_03765 PF00575 S1 RNA binding domain PF555_03765 PF10150 Ribonuclease E/G family PF555_03775 PF03007 Wax ester synthase-like Acyl-CoA acyltransferase domain PF555_03775 PF06974 Protein of unknown function (DUF1298) PF555_03780 PF01507 Phosphoadenosine phosphosulfate reductase family PF555_03795 PF02525 Flavodoxin-like fold PF555_03815 PF02673 Bacitracin resistance protein BacA PF555_03820 PF06719 AraC-type transcriptional regulator N-terminus PF555_03820 PF12833 Helix-turn-helix domain PF555_03825 PF14765 Polyketide synthase dehydratase PF555_03825 PF02801 Beta-ketoacyl synthase, C-terminal domain PF555_03825 PF00109 Beta-ketoacyl synthase, N-terminal domain PF555_03825 PF08990 Erythronolide synthase docking PF555_03825 PF09277 Erythronolide synthase, docking PF555_03825 PF00550 Phosphopantetheine attachment site PF555_03825 PF08240 Alcohol dehydrogenase GroES-like domain PF555_03825 PF00698 Acyl transferase domain PF555_03825 PF16197 Ketoacyl-synthetase C-terminal extension PF555_03825 PF08659 KR domain PF555_03830 PF01965 DJ-1/PfpI family PF555_03865 PF00324 Amino acid permease PF555_03870 PF04303 PrpF protein PF555_03875 PF00348 Polyprenyl synthetase PF555_03880 PF04237 YjbR PF555_03885 PF01145 SPFH domain / Band 7 family PF555_03895 PF01734 Patatin-like phospholipase PF555_03920 PF13817 IS66 C-terminal element PF555_03920 PF13007 Transposase C of IS166 homeodomain PF555_03920 PF13005 zinc-finger binding domain of transposase IS66 PF555_03920 PF03050 Transposase IS66 family PF555_03935 PF13817 IS66 C-terminal element PF555_03935 PF03050 Transposase IS66 family PF555_03935 PF13005 zinc-finger binding domain of transposase IS66 PF555_03935 PF13007 Transposase C of IS166 homeodomain PF555_03955 PF00072 Response regulator receiver domain PF555_03955 PF00486 Transcriptional regulatory protein, C terminal PF555_03960 PF08521 Two-component sensor kinase N-terminal PF555_03960 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PF555_03960 PF00512 His Kinase A (phospho-acceptor) domain PF555_03970 PF00909 Ammonium Transporter Family PF555_03975 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family PF555_03975 PF03466 LysR substrate binding domain PF555_03990 PF13649 Methyltransferase domain PF555_03995 PF00133 tRNA synthetases class I (I, L, M and V) PF555_03995 PF10458 Valyl tRNA synthetase tRNA binding arm PF555_03995 PF08264 Anticodon-binding domain of tRNA PF555_04015 PF01906 Putative heavy-metal-binding PF555_04020 PF01906 Putative heavy-metal-binding PF555_04025 PF02321 Outer membrane efflux protein PF555_04030 PF00873 AcrB/AcrD/AcrF family PF555_04035 PF00529 HlyD membrane-fusion protein of T1SS PF555_04035 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion PF555_04040 PF01569 PAP2 superfamily PF555_04050 PF00348 Polyprenyl synthetase PF555_04060 PF00829 Ribosomal prokaryotic L21 protein PF555_04065 PF01016 Ribosomal L27 protein PF555_04070 PF03548 Outer membrane lipoprotein carrier protein LolA PF555_04080 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) PF555_04080 PF02403 Seryl-tRNA synthetase N-terminal domain PF555_04085 PF10414 Sirohaem synthase dimerisation region PF555_04085 PF14824 Sirohaem biosynthesis protein central PF555_04085 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases PF555_04090 PF00588 SpoU rRNA Methylase family PF555_04095 PF01638 HxlR-like helix-turn-helix PF555_04100 PF03358 NADPH-dependent FMN reductase PF555_04105 PF13520 Amino acid permease PF555_04110 PF00465 Iron-containing alcohol dehydrogenase PF555_04120 PF03099 Biotin/lipoate A/B protein ligase family PF555_04125 PF04359 Protein of unknown function (DUF493) PF555_04130 PF04545 Sigma-70, region 4 PF555_04130 PF04539 Sigma-70 region 3 PF555_04130 PF00140 Sigma-70 factor, region 1.2 PF555_04130 PF03979 Sigma-70 factor, region 1.1 PF555_04130 PF04546 Sigma-70, non-essential region PF555_04130 PF04542 Sigma-70 region 2 PF555_04150 PF17773 UPF0176 acylphosphatase like domain PF555_04150 PF00581 Rhodanese-like domain PF555_04160 PF00285 Citrate synthase, C-terminal domain PF555_04165 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit PF555_04170 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit PF555_04175 PF00890 FAD binding domain PF555_04175 PF02910 Fumarate reductase flavoprotein C-term PF555_04180 PF13085 2Fe-2S iron-sulfur cluster binding domain PF555_04195 PF00676 Dehydrogenase E1 component PF555_04195 PF16870 2-oxoglutarate dehydrogenase C-terminal PF555_04195 PF02779 Transketolase, pyrimidine binding domain PF555_04195 PF16078 2-oxoglutarate dehydrogenase N-terminus PF555_04200 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) PF555_04200 PF00364 Biotin-requiring enzyme PF555_04200 PF02817 e3 binding domain PF555_04205 PF07992 Pyridine nucleotide-disulphide oxidoreductase PF555_04205 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain PF555_04210 PF08442 ATP-grasp domain PF555_04210 PF00549 CoA-ligase PF555_04215 PF02629 CoA binding domain PF555_04215 PF00549 CoA-ligase PF555_04220 PF00579 tRNA synthetases class I (W and Y) PF555_04225 PF05661 Protein of unknown function (DUF808) PF555_04230 PF04228 Putative neutral zinc metallopeptidase PF555_04235 PF00999 Sodium/hydrogen exchanger family PF555_04250 PF09587 Bacterial capsule synthesis protein PGA_cap PF555_04260 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain PF555_04265 PF00582 Universal stress protein family PF555_04270 PF00132 Bacterial transferase hexapeptide (six repeats) PF555_04275 PF01272 Transcription elongation factor, GreA/GreB, C-term PF555_04275 PF03449 Transcription elongation factor, N-terminal PF555_04280 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain PF555_04280 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain PF555_04280 PF02142 MGS-like domain PF555_04285 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain PF555_04285 PF00117 Glutamine amidotransferase class-I PF555_04300 PF01985 CRS1 / YhbY (CRM) domain PF555_04305 PF01728 FtsJ-like methyltransferase PF555_04310 PF00004 ATPase family associated with various cellular activities (AAA) PF555_04310 PF17862 AAA+ lid domain PF555_04310 PF06480 FtsH Extracellular PF555_04310 PF01434 Peptidase family M41 PF555_04315 PF00809 Pterin binding enzyme PF555_04335 PF09423 PhoD-like phosphatase PF555_04335 PF16655 PhoD-like phosphatase, N-terminal domain PF555_04350 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain PF555_04350 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain PF555_04365 PF00083 Sugar (and other) transporter PF555_04370 PF02782 FGGY family of carbohydrate kinases, C-terminal domain PF555_04370 PF00370 FGGY family of carbohydrate kinases, N-terminal domain PF555_04375 PF01266 FAD dependent oxidoreductase PF555_04375 PF16901 C-terminal domain of alpha-glycerophosphate oxidase PF555_04380 PF00821 Phosphoenolpyruvate carboxykinase C-terminal P-loop domain PF555_04380 PF17297 Phosphoenolpyruvate carboxykinase N-terminal domain PF555_04385 PF00781 Diacylglycerol kinase catalytic domain PF555_04390 PF00149 Calcineurin-like phosphoesterase PF555_04400 PF00166 Chaperonin 10 Kd subunit PF555_04405 PF00118 TCP-1/cpn60 chaperonin family PF555_04410 PF01219 Prokaryotic diacylglycerol kinase PF555_04415 PF00753 Metallo-beta-lactamase superfamily PF555_04420 PF03009 Glycerophosphoryl diester phosphodiesterase family PF555_04425 PF00873 AcrB/AcrD/AcrF family PF555_04435 PF01435 Peptidase family M48 PF555_04440 PF01464 Transglycosylase SLT domain PF555_04445 PF01171 PP-loop family PF555_04455 PF00497 Bacterial extracellular solute-binding proteins, family 3 PF555_04455 PF01464 Transglycosylase SLT domain PF555_04460 PF01272 Transcription elongation factor, GreA/GreB, C-term PF555_04460 PF03449 Transcription elongation factor, N-terminal PF555_04485 PF09857 Putative toxin of bacterial toxin-antitoxin pair PF555_04505 PF00881 Nitroreductase family PF555_04520 PF02595 Glycerate kinase family PF555_04525 PF00384 Molybdopterin oxidoreductase PF555_04530 PF02634 FdhD/NarQ family PF555_04535 PF06803 Protein of unknown function (DUF1232) PF555_04540 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain PF555_04540 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain PF555_04540 PF11890 Domain of unknown function (DUF3410) PF555_04545 PF00152 tRNA synthetases class II (D, K and N) PF555_04555 PF18073 Rubredoxin metal binding domain PF555_04560 PF00324 Amino acid permease PF555_04570 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain PF555_04570 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain PF555_04575 PF01678 Diaminopimelate epimerase PF555_04580 PF01810 LysE type translocator PF555_04585 PF02899 Phage integrase, N-terminal SAM-like domain PF555_04585 PF00589 Phage integrase family PF555_04590 PF01012 Electron transfer flavoprotein domain PF555_04595 PF01012 Electron transfer flavoprotein domain PF555_04595 PF00766 Electron transfer flavoprotein FAD-binding domain PF555_04600 PF03989 DNA gyrase C-terminal domain, beta-propeller PF555_04600 PF00521 DNA gyrase/topoisomerase IV, subunit A PF555_04615 PF00535 Glycosyl transferase family 2 PF555_04635 PF13533 Biotin-lipoyl like PF555_04645 PF00266 Aminotransferase class-V PF555_04660 PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 PF555_04670 PF02687 FtsX-like permease family PF555_04670 PF12704 MacB-like periplasmic core domain PF555_04675 PF00005 ABC transporter PF555_04680 PF03772 Competence protein PF555_04680 PF00753 Metallo-beta-lactamase superfamily PF555_04680 PF13567 Domain of unknown function (DUF4131) PF555_04690 PF01343 Peptidase family S49 PF555_04690 PF06965 Na+/H+ antiporter 1 PF555_04695 PF12697 Alpha/beta hydrolase family PF555_04700 PF00551 Formyl transferase PF555_04705 PF02769 AIR synthase related protein, C-terminal domain PF555_04705 PF00586 AIR synthase related protein, N-terminal domain PF555_04710 PF01594 AI-2E family transporter PF555_04715 PF00308 Bacterial dnaA protein PF555_04715 PF08299 Bacterial dnaA protein helix-turn-helix PF555_04715 PF11638 DnaA N-terminal domain PF555_04730 PF13007 Transposase C of IS166 homeodomain PF555_04730 PF13817 IS66 C-terminal element PF555_04730 PF03050 Transposase IS66 family PF555_04730 PF13005 zinc-finger binding domain of transposase IS66 PF555_04745 PF03869 Arc-like DNA binding domain PF555_04810 PF13356 Arm DNA-binding domain PF555_04810 PF00589 Phage integrase family PF555_04820 PF00854 POT family PF555_04825 PF00120 Glutamine synthetase, catalytic domain PF555_04825 PF03951 Glutamine synthetase, beta-Grasp domain PF555_04830 PF04345 Chorismate lyase PF555_04835 PF01040 UbiA prenyltransferase family PF555_04870 PF02777 Iron/manganese superoxide dismutases, C-terminal domain PF555_04870 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain PF555_04875 PF01784 NIF3 (NGG1p interacting factor 3) PF555_04880 PF13180 PDZ domain PF555_04885 PF01743 Poly A polymerase head domain PF555_04885 PF12627 Probable RNA and SrmB- binding site of polymerase A PF555_04890 PF00390 Malic enzyme, N-terminal domain PF555_04890 PF03949 Malic enzyme, NAD binding domain PF555_04890 PF01515 Phosphate acetyl/butaryl transferase PF555_04895 PF03707 Bacterial signalling protein N terminal repeat PF555_04895 PF00990 Diguanylate cyclase, GGDEF domain PF555_04895 PF00563 EAL domain PF555_04900 PF04452 RNA methyltransferase PF555_04905 PF02219 Methylenetetrahydrofolate reductase PF555_04910 PF05221 S-adenosyl-L-homocysteine hydrolase PF555_04910 PF00670 S-adenosyl-L-homocysteine hydrolase, NAD binding domain PF555_04925 PF00441 Acyl-CoA dehydrogenase, C-terminal domain PF555_04925 PF02771 Acyl-CoA dehydrogenase, N-terminal domain PF555_04925 PF09317 Domain of unknown function (DUF1974) PF555_04930 PF04055 Radical SAM superfamily PF555_04935 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain PF555_04935 PF07992 Pyridine nucleotide-disulphide oxidoreductase PF555_04945 PF07690 Major Facilitator Superfamily PF555_04955 PF00557 Metallopeptidase family M24 PF555_04960 PF00318 Ribosomal protein S2 PF555_04965 PF00889 Elongation factor TS PF555_04975 PF12833 Helix-turn-helix domain PF555_04995 PF03330 Lytic transglycolase PF555_04995 PF05036 Sporulation related domain PF555_05000 PF13406 Transglycosylase SLT domain PF555_05005 PF01098 Cell cycle protein PF555_05015 PF14489 QueF-like protein PF555_05015 PF14819 Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term PF555_05020 PF01061 ABC-2 type transporter PF555_05025 PF00005 ABC transporter PF555_05055 PF00464 Serine hydroxymethyltransferase PF555_05060 PF02321 Outer membrane efflux protein PF555_05065 PF00873 AcrB/AcrD/AcrF family PF555_05070 PF13533 Biotin-lipoyl like PF555_05075 PF03466 LysR substrate binding domain PF555_05075 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family PF555_05080 PF00497 Bacterial extracellular solute-binding proteins, family 3 PF555_05085 PF00528 Binding-protein-dependent transport system inner membrane component PF555_05090 PF00528 Binding-protein-dependent transport system inner membrane component PF555_05095 PF00005 ABC transporter PF555_05100 PF00893 Small Multidrug Resistance protein PF555_05105 PF00037 4Fe-4S binding domain PF555_05110 PF16325 Peptidase family U32 C-terminal domain PF555_05110 PF01136 Peptidase family U32 PF555_05115 PF00392 Bacterial regulatory proteins, gntR family PF555_05115 PF00155 Aminotransferase class I and II PF555_05120 PF02567 Phenazine biosynthesis-like protein PF555_05125 PF00970 Oxidoreductase FAD-binding domain PF555_05125 PF00175 Oxidoreductase NAD-binding domain PF555_05130 PF01980 tRNA-methyltransferase O PF555_05130 PF18389 TrmO C-terminal domain PF555_05160 PF00072 Response regulator receiver domain PF555_05160 PF00486 Transcriptional regulatory protein, C terminal PF555_05165 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PF555_05165 PF00512 His Kinase A (phospho-acceptor) domain PF555_05165 PF08521 Two-component sensor kinase N-terminal PF555_05175 PF00293 NUDIX domain PF555_05185 PF00912 Transglycosylase PF555_05185 PF00905 Penicillin binding protein transpeptidase domain PF555_05185 PF14814 Bifunctional transglycosylase second domain PF555_05190 PF01513 ATP-NAD kinase PF555_05195 PF07023 Protein of unknown function (DUF1315) PF555_05200 PF02885 Glycosyl transferase family, helical bundle domain PF555_05200 PF00591 Glycosyl transferase family, a/b domain PF555_05205 PF00375 Sodium:dicarboxylate symporter family PF555_05210 PF02771 Acyl-CoA dehydrogenase, N-terminal domain PF555_05210 PF00441 Acyl-CoA dehydrogenase, C-terminal domain PF555_05210 PF02770 Acyl-CoA dehydrogenase, middle domain PF555_05215 PF00756 Putative esterase PF555_05220 PF01842 ACT domain PF555_05220 PF01817 Chorismate mutase type II PF555_05220 PF00800 Prephenate dehydratase PF555_05225 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) PF555_05235 PF01546 Peptidase family M20/M25/M40 PF555_05235 PF07687 Peptidase dimerisation domain PF555_05240 PF00753 Metallo-beta-lactamase superfamily PF555_05250 PF03883 Peroxide stress protein YaaA PF555_05260 PF05690 Thiazole biosynthesis protein ThiG PF555_05270 PF04241 Protein of unknown function (DUF423) PF555_05275 PF00140 Sigma-70 factor, region 1.2 PF555_05275 PF04542 Sigma-70 region 2 PF555_05275 PF04545 Sigma-70, region 4 PF555_05290 PF00313 'Cold-shock' DNA-binding domain PF555_05295 PF00270 DEAD/DEAH box helicase PF555_05295 PF00271 Helicase conserved C-terminal domain PF555_05305 PF00881 Nitroreductase family PF555_05310 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus PF555_05310 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus PF555_05330 PF01180 Dihydroorotate dehydrogenase PF555_05335 PF02674 Colicin V production protein PF555_05340 PF00156 Phosphoribosyl transferase domain PF555_05355 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain PF555_05355 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain PF555_05360 PF01435 Peptidase family M48 PF555_05365 PF09424 Yqey-like protein PF555_05370 PF01165 Ribosomal protein S21 PF555_05375 PF00814 Glycoprotease family PF555_05395 PF03793 PASTA domain PF555_05395 PF00069 Protein kinase domain PF555_05420 PF08479 POTRA domain, ShlB-type PF555_05420 PF17287 POTRA domain PF555_05420 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB PF555_05425 PF05860 haemagglutination activity domain PF555_05425 PF13332 Hemagglutinin repeat PF555_05425 PF13018 Extended Signal Peptide of Type V secretion system PF555_05425 PF05860 haemagglutination activity domain PF555_05425 PF13332 Hemagglutinin repeat PF555_05425 PF04829 Pre-toxin domain with VENN motif PF555_05425 PF04829 Pre-toxin domain with VENN motif PF555_05425 PF13018 Extended Signal Peptide of Type V secretion system PF555_05465 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family PF555_05465 PF03466 LysR substrate binding domain PF555_05495 PF00083 Sugar (and other) transporter PF555_05495 PF08946 Osmosensory transporter coiled coil PF555_05500 PF00293 NUDIX domain PF555_05530 PF04403 Paraquat-inducible protein A PF555_05535 PF02470 MlaD protein PF555_05545 PF01177 Asp/Glu/Hydantoin racemase PF555_05550 PF00892 EamA-like transporter family PF555_05560 PF07995 Glucose / Sorbosone dehydrogenase PF555_05580 PF00375 Sodium:dicarboxylate symporter family PF555_05590 PF16123 Hydroxyacylglutathione hydrolase C-terminus PF555_05590 PF00753 Metallo-beta-lactamase superfamily PF555_05595 PF00528 Binding-protein-dependent transport system inner membrane component PF555_05600 PF00005 ABC transporter PF555_05600 PF09383 NIL domain PF555_05605 PF03180 NLPA lipoprotein PF555_05610 PF02843 Phosphoribosylglycinamide synthetase, C domain PF555_05610 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain PF555_05610 PF02844 Phosphoribosylglycinamide synthetase, N domain PF555_05615 PF01808 AICARFT/IMPCHase bienzyme PF555_05615 PF02142 MGS-like domain PF555_05620 PF02954 Bacterial regulatory protein, Fis family PF555_05640 PF01134 Glucose inhibited division protein A PF555_05640 PF13932 GidA associated domain PF555_05650 PF14403 Circularly permuted ATP-grasp type 2 PF555_05660 PF01841 Transglutaminase-like superfamily PF555_05660 PF08379 Bacterial transglutaminase-like N-terminal region PF555_05670 PF01168 Alanine racemase, N-terminal domain PF555_05670 PF00842 Alanine racemase, C-terminal domain PF555_05675 PF00772 DnaB-like helicase N terminal domain PF555_05675 PF03796 DnaB-like helicase C terminal domain PF555_05680 PF03948 Ribosomal protein L9, C-terminal domain PF555_05680 PF01281 Ribosomal protein L9, N-terminal domain PF555_05685 PF01084 Ribosomal protein S18 PF555_05690 PF01250 Ribosomal protein S6 PF555_05695 PF01040 UbiA prenyltransferase family PF555_05700 PF03626 Prokaryotic Cytochrome C oxidase subunit IV PF555_05705 PF00510 Cytochrome c oxidase subunit III PF555_05710 PF00115 Cytochrome C and Quinol oxidase polypeptide I PF555_05715 PF00116 Cytochrome C oxidase subunit II, periplasmic domain PF555_05715 PF06481 COX Aromatic Rich Motif PF555_05725 PF00391 PEP-utilising enzyme, mobile domain PF555_05725 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain PF555_05725 PF02896 PEP-utilising enzyme, TIM barrel domain PF555_05730 PF03618 Kinase/pyrophosphorylase PF555_05740 PF14883 Hypothetical glycosyl hydrolase family 13 PF555_05740 PF01522 Polysaccharide deacetylase PF555_05745 PF00535 Glycosyl transferase family 2 PF555_05750 PF13994 PgaD-like protein PF555_05760 PF00296 Luciferase-like monooxygenase PF555_05775 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family PF555_05775 PF03466 LysR substrate binding domain PF555_05785 PF03462 PCRF domain PF555_05785 PF00472 RF-1 domain PF555_05790 PF13847 Methyltransferase domain PF555_05790 PF17827 PrmC N-terminal domain PF555_05795 PF12833 Helix-turn-helix domain PF555_05800 PF00106 short chain dehydrogenase PF555_05805 PF02771 Acyl-CoA dehydrogenase, N-terminal domain PF555_05805 PF02770 Acyl-CoA dehydrogenase, middle domain PF555_05805 PF00441 Acyl-CoA dehydrogenase, C-terminal domain PF555_05810 PF00501 AMP-binding enzyme PF555_05810 PF13193 AMP-binding enzyme C-terminal domain PF555_05815 PF01613 Flavin reductase like domain PF555_05820 PF00899 ThiF family PF555_05825 PF03109 ABC1 family PF555_05830 PF02152 Dihydroneopterin aldolase PF555_05840 PF03814 Potassium-transporting ATPase A subunit PF555_05850 PF02669 K+-transporting ATPase, c chain PF555_05855 PF13493 Domain of unknown function (DUF4118) PF555_05855 PF02702 Osmosensitive K+ channel His kinase sensor domain PF555_05855 PF00512 His Kinase A (phospho-acceptor) domain PF555_05855 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PF555_05860 PF00072 Response regulator receiver domain PF555_05860 PF00486 Transcriptional regulatory protein, C terminal PF555_05865 PF00120 Glutamine synthetase, catalytic domain PF555_05870 PF13005 zinc-finger binding domain of transposase IS66 PF555_05870 PF13817 IS66 C-terminal element PF555_05870 PF03050 Transposase IS66 family PF555_05870 PF13007 Transposase C of IS166 homeodomain PF555_05890 PF03232 Ubiquinone biosynthesis protein COQ7 PF555_05895 PF07690 Major Facilitator Superfamily PF555_05900 PF01103 Surface antigen PF555_05900 PF17243 POTRA domain TamA domain 1 PF555_05900 PF07244 Surface antigen variable number repeat PF555_05915 PF11791 Aconitate B N-terminal domain PF555_05915 PF06434 Aconitate hydratase 2 N-terminus PF555_05915 PF00330 Aconitase family (aconitate hydratase) PF555_05925 PF00520 Ion transport protein PF555_05925 PF00027 Cyclic nucleotide-binding domain PF555_05930 PF07690 Major Facilitator Superfamily PF555_05945 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family PF555_05945 PF03466 LysR substrate binding domain PF555_05950 PF04284 Protein of unknown function (DUF441) PF555_05960 PF00849 RNA pseudouridylate synthase PF555_05960 PF01479 S4 domain PF555_05975 PF00849 RNA pseudouridylate synthase PF555_05975 PF01479 S4 domain PF555_05980 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE PF555_05985 PF01119 DNA mismatch repair protein, C-terminal domain PF555_05985 PF08676 MutL C terminal dimerisation domain PF555_05995 PF17209 Hfq protein PF555_06005 PF00881 Nitroreductase family PF555_06015 PF00149 Calcineurin-like phosphoesterase PF555_06020 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD PF555_06025 PF00749 tRNA synthetases class I (E and Q), catalytic domain PF555_06025 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain PF555_06030 PF00958 GMP synthase C terminal domain PF555_06030 PF00117 Glutamine amidotransferase class-I PF555_06030 PF02540 NAD synthase PF555_06035 PF05985 Ethanolamine ammonia-lyase light chain (EutC) PF555_06040 PF06751 Ethanolamine ammonia lyase large subunit (EutB) PF555_06045 PF13520 Amino acid permease PF555_06050 PF00171 Aldehyde dehydrogenase family PF555_06065 PF00465 Iron-containing alcohol dehydrogenase PF555_06070 PF14493 Helix-turn-helix domain PF555_06070 PF05970 PIF1-like helicase PF555_06080 PF06445 GyrI-like small molecule binding domain PF555_06085 PF02110 Hydroxyethylthiazole kinase family PF555_06100 PF17432 Domain of unknown function (DUF3458_C) ARM repeats PF555_06100 PF01433 Peptidase family M1 domain PF555_06100 PF11940 Domain of unknown function (DUF3458) Ig-like fold PF555_06115 PF13953 PapC C-terminal domain PF555_06115 PF13954 PapC N-terminal domain PF555_06115 PF00577 Outer membrane usher protein PF555_06140 PF01817 Chorismate mutase type II PF555_06145 PF01037 Lrp/AsnC ligand binding domain PF555_06155 PF00440 Bacterial regulatory proteins, tetR family PF555_06160 PF07715 TonB-dependent Receptor Plug Domain PF555_06160 PF00593 TonB dependent receptor PF555_06165 PF00924 Mechanosensitive ion channel PF555_06195 PF07715 TonB-dependent Receptor Plug Domain PF555_06195 PF00593 TonB dependent receptor PF555_06215 PF00005 ABC transporter PF555_06215 PF12848 ABC transporter PF555_06220 PF00582 Universal stress protein family PF555_06245 PF00689 Cation transporting ATPase, C-terminus PF555_06245 PF00690 Cation transporter/ATPase, N-terminus PF555_06250 PF02308 MgtC family PF555_06255 PF03594 Benzoate membrane transport protein PF555_06260 PF01037 Lrp/AsnC ligand binding domain PF555_06280 PF13007 Transposase C of IS166 homeodomain PF555_06280 PF13817 IS66 C-terminal element PF555_06280 PF03050 Transposase IS66 family PF555_06280 PF13005 zinc-finger binding domain of transposase IS66 PF555_06290 PF00923 Transaldolase/Fructose-6-phosphate aldolase PF555_06295 PF03466 LysR substrate binding domain PF555_06295 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family PF555_06305 PF02803 Thiolase, C-terminal domain PF555_06305 PF00108 Thiolase, N-terminal domain PF555_06315 PF01575 MaoC like domain PF555_06320 PF00144 Beta-lactamase PF555_06330 PF07690 Major Facilitator Superfamily PF555_06335 PF12169 DNA polymerase III subunits gamma and tau domain III PF555_06335 PF12168 DNA polymerase III subunits tau domain IV DnaB-binding PF555_06335 PF12170 DNA polymerase III tau subunit V interacting with alpha PF555_06345 PF05506 Domain of unknown function (DUF756) PF555_06345 PF04185 Phosphoesterase family PF555_06350 PF03061 Thioesterase superfamily PF555_06355 PF00465 Iron-containing alcohol dehydrogenase PF555_06365 PF01451 Low molecular weight phosphotyrosine protein phosphatase PF555_06370 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain PF555_06370 PF01565 FAD binding domain PF555_06385 PF01645 Conserved region in glutamate synthase PF555_06405 PF12832 MFS_1 like family PF555_06415 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain PF555_06415 PF02785 Biotin carboxylase C-terminal domain PF555_06415 PF00289 Biotin carboxylase, N-terminal domain PF555_06420 PF00364 Biotin-requiring enzyme PF555_06425 PF01220 Dehydroquinase class II PF555_06430 PF00817 impB/mucB/samB family PF555_06430 PF13438 Domain of unknown function (DUF4113) PF555_06430 PF11799 impB/mucB/samB family C-terminal domain PF555_06435 PF00005 ABC transporter PF555_06440 PF00072 Response regulator receiver domain PF555_06440 PF00486 Transcriptional regulatory protein, C terminal PF555_06450 PF04324 BFD-like [2Fe-2S] binding domain PF555_06450 PF18267 Rubredoxin NAD+ reductase C-terminal domain PF555_06450 PF01077 Nitrite and sulphite reductase 4Fe-4S domain PF555_06450 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain PF555_06450 PF07992 Pyridine nucleotide-disulphide oxidoreductase PF555_06450 PF13806 Rieske-like [2Fe-2S] domain PF555_06455 PF04324 BFD-like [2Fe-2S] binding domain PF555_06455 PF01077 Nitrite and sulphite reductase 4Fe-4S domain PF555_06455 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain PF555_06455 PF07992 Pyridine nucleotide-disulphide oxidoreductase PF555_06455 PF18267 Rubredoxin NAD+ reductase C-terminal domain PF555_06460 PF00384 Molybdopterin oxidoreductase PF555_06460 PF01568 Molydopterin dinucleotide binding domain PF555_06460 PF04879 Molybdopterin oxidoreductase Fe4S4 domain PF555_06460 PF04324 BFD-like [2Fe-2S] binding domain PF555_06465 PF12804 MobA-like NTP transferase domain PF555_06470 PF04879 Molybdopterin oxidoreductase Fe4S4 domain PF555_06470 PF00384 Molybdopterin oxidoreductase PF555_06470 PF01568 Molydopterin dinucleotide binding domain PF555_06475 PF06463 Molybdenum Cofactor Synthesis C PF555_06475 PF04055 Radical SAM superfamily PF555_06485 PF02391 MoaE protein PF555_06490 PF00994 Probable molybdopterin binding domain PF555_06490 PF01967 MoaC family PF555_06495 PF03453 MoeA N-terminal region (domain I and II) PF555_06495 PF03454 MoeA C-terminal region (domain IV) PF555_06495 PF00994 Probable molybdopterin binding domain PF555_06500 PF01638 HxlR-like helix-turn-helix PF555_06505 PF00155 Aminotransferase class I and II PF555_06505 PF00392 Bacterial regulatory proteins, gntR family PF555_06510 PF00892 EamA-like transporter family PF555_06530 PF02635 DsrE/DsrF-like family PF555_06535 PF16363 GDP-mannose 4,6 dehydratase PF555_06540 PF10415 Fumarase C C-terminus PF555_06540 PF00206 Lyase PF555_06565 PF01266 FAD dependent oxidoreductase PF555_06575 PF02542 YgbB family PF555_06585 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain PF555_06585 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain PF555_06605 PF02954 Bacterial regulatory protein, Fis family PF555_06605 PF00072 Response regulator receiver domain PF555_06605 PF00158 Sigma-54 interaction domain PF555_06610 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PF555_06610 PF00512 His Kinase A (phospho-acceptor) domain PF555_06610 PF00989 PAS fold PF555_06620 PF04055 Radical SAM superfamily PF555_06620 PF18693 TRAM domain PF555_06620 PF00919 Uncharacterized protein family UPF0004 PF555_06625 PF00696 Amino acid kinase family PF555_06630 PF01765 Ribosome recycling factor PF555_06635 PF01255 Putative undecaprenyl diphosphate synthase PF555_06645 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase PF555_06645 PF13288 DXP reductoisomerase C-terminal domain PF555_06645 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain PF555_06650 PF17820 PDZ domain PF555_06650 PF13180 PDZ domain PF555_06650 PF02163 Peptidase family M50 PF555_06655 PF01103 Surface antigen PF555_06655 PF07244 Surface antigen variable number repeat PF555_06665 PF00132 Bacterial transferase hexapeptide (six repeats) PF555_06665 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD PF555_06670 PF07977 FabA-like domain PF555_06675 PF00132 Bacterial transferase hexapeptide (six repeats) PF555_06675 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 PF555_06690 PF02631 RecX family PF555_06695 PF00154 recA bacterial DNA recombination protein PF555_06700 PF01479 S4 domain PF555_06705 PF13419 Haloacid dehalogenase-like hydrolase PF555_06730 PF01037 Lrp/AsnC ligand binding domain PF555_06735 PF00266 Aminotransferase class-V PF555_06740 PF00324 Amino acid permease PF555_06755 PF05922 Peptidase inhibitor I9 PF555_06755 PF00082 Subtilase family PF555_06765 PF13007 Transposase C of IS166 homeodomain PF555_06765 PF13817 IS66 C-terminal element PF555_06765 PF03050 Transposase IS66 family PF555_06765 PF13005 zinc-finger binding domain of transposase IS66 PF555_06780 PF00916 Sulfate permease family PF555_06780 PF01740 STAS domain PF555_06785 PF02586 SOS response associated peptidase (SRAP) PF555_06790 PF07995 Glucose / Sorbosone dehydrogenase PF555_06810 PF03050 Transposase IS66 family PF555_06810 PF13005 zinc-finger binding domain of transposase IS66 PF555_06810 PF13007 Transposase C of IS166 homeodomain PF555_06810 PF13817 IS66 C-terminal element PF555_06820 PF00990 Diguanylate cyclase, GGDEF domain PF555_06820 PF03707 Bacterial signalling protein N terminal repeat PF555_06820 PF00563 EAL domain PF555_06835 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit PF555_06835 PF02378 Phosphotransferase system, EIIC PF555_06840 PF00294 pfkB family carbohydrate kinase PF555_06845 PF05524 PEP-utilising enzyme, N-terminal PF555_06845 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 PF555_06845 PF00391 PEP-utilising enzyme, mobile domain PF555_06845 PF00381 PTS HPr component phosphorylation site PF555_06845 PF02896 PEP-utilising enzyme, TIM barrel domain PF555_06870 PF05525 Branched-chain amino acid transport protein PF555_06875 PF00557 Metallopeptidase family M24 PF555_06880 PF03466 LysR substrate binding domain PF555_06880 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family PF555_06890 PF00462 Glutaredoxin PF555_06895 PF00202 Aminotransferase class-III PF555_06900 PF00571 CBS domain PF555_06900 PF00478 IMP dehydrogenase / GMP reductase domain PF555_06925 PF02881 SRP54-type protein, helical bundle domain PF555_06925 PF00448 SRP54-type protein, GTPase domain PF555_06935 PF09829 Uncharacterized protein conserved in bacteria (DUF2057) PF555_06945 PF08173 Membrane bound YbgT-like protein PF555_06950 PF02322 Cytochrome bd terminal oxidase subunit II PF555_06955 PF01654 Cytochrome bd terminal oxidase subunit I PF555_06965 PF03050 Transposase IS66 family PF555_06965 PF13007 Transposase C of IS166 homeodomain PF555_06965 PF13005 zinc-finger binding domain of transposase IS66 PF555_06965 PF13817 IS66 C-terminal element PF555_06980 PF07290 Protein of unknown function (DUF1449) PF555_06990 PF00294 pfkB family carbohydrate kinase PF555_06995 PF07715 TonB-dependent Receptor Plug Domain PF555_06995 PF00593 TonB dependent receptor PF555_07000 PF00675 Insulinase (Peptidase family M16) PF555_07000 PF08367 Peptidase M16C associated PF555_07000 PF05193 Peptidase M16 inactive domain PF555_07005 PF02253 Phospholipase A1 PF555_07010 PF02386 Cation transport protein PF555_07015 PF02254 TrkA-N domain PF555_07015 PF02080 TrkA-C domain PF555_07020 PF00585 C-terminal regulatory domain of Threonine dehydratase PF555_07020 PF00291 Pyridoxal-phosphate dependent enzyme PF555_07025 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) PF555_07040 PF01118 Semialdehyde dehydrogenase, NAD binding domain PF555_07040 PF02774 Semialdehyde dehydrogenase, dimerisation domain PF555_07050 PF02617 ATP-dependent Clp protease adaptor protein ClpS PF555_07055 PF00004 ATPase family associated with various cellular activities (AAA) PF555_07055 PF02861 Clp amino terminal domain, pathogenicity island component PF555_07055 PF10431 C-terminal, D2-small domain, of ClpB protein PF555_07055 PF17871 AAA lid domain PF555_07055 PF07724 AAA domain (Cdc48 subfamily) PF555_07060 PF02694 Uncharacterised BCR, YnfA/UPF0060 family PF555_07065 PF00793 DAHP synthetase I family PF555_07080 PF07992 Pyridine nucleotide-disulphide oxidoreductase PF555_07080 PF00724 NADH:flavin oxidoreductase / NADH oxidase family PF555_07110 PF00117 Glutamine amidotransferase class-I PF555_07110 PF06418 CTP synthase N-terminus PF555_07115 PF00793 DAHP synthetase I family PF555_07120 PF03952 Enolase, N-terminal domain PF555_07120 PF00113 Enolase, C-terminal TIM barrel domain PF555_07125 PF04239 Protein of unknown function (DUF421) PF555_07130 PF04977 Septum formation initiator PF555_07135 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase PF555_07140 PF01144 Coenzyme A transferase PF555_07145 PF01144 Coenzyme A transferase PF555_07150 PF00108 Thiolase, N-terminal domain PF555_07150 PF02803 Thiolase, C-terminal domain PF555_07155 PF00206 Lyase PF555_07155 PF10397 Adenylosuccinate lyase C-terminus PF555_07160 PF00561 alpha/beta hydrolase fold PF555_07165 PF07690 Major Facilitator Superfamily PF555_07170 PF02627 Carboxymuconolactone decarboxylase family PF555_07175 PF12391 Protocatechuate 3,4-dioxygenase beta subunit N terminal PF555_07175 PF00775 Dioxygenase PF555_07180 PF00775 Dioxygenase PF555_07185 PF01487 Type I 3-dehydroquinase PF555_07190 PF05048 Periplasmic copper-binding protein (NosD) PF555_07195 PF04966 Carbohydrate-selective porin, OprB family PF555_07200 PF01011 PQQ enzyme repeat PF555_07200 PF13360 PQQ-like domain PF555_07210 PF04143 Sulphur transport PF555_07220 PF00753 Metallo-beta-lactamase superfamily PF555_07225 PF01614 Bacterial transcriptional regulator PF555_07225 PF09339 IclR helix-turn-helix domain PF555_07230 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family PF555_07230 PF03466 LysR substrate binding domain PF555_07235 PF00441 Acyl-CoA dehydrogenase, C-terminal domain PF555_07235 PF02770 Acyl-CoA dehydrogenase, middle domain PF555_07235 PF02771 Acyl-CoA dehydrogenase, N-terminal domain PF555_07250 PF00106 short chain dehydrogenase PF555_07260 PF07690 Major Facilitator Superfamily PF555_07270 PF01425 Amidase PF555_07275 PF08028 Acyl-CoA dehydrogenase, C-terminal domain PF555_07290 PF00848 Ring hydroxylating alpha subunit (catalytic domain) PF555_07290 PF00355 Rieske [2Fe-2S] domain PF555_07305 PF00111 2Fe-2S iron-sulfur cluster binding domain PF555_07305 PF00175 Oxidoreductase NAD-binding domain PF555_07310 PF01613 Flavin reductase like domain PF555_07315 PF12833 Helix-turn-helix domain PF555_07315 PF02311 AraC-like ligand binding domain PF555_07320 PF07833 Copper amine oxidase N-terminal domain PF555_07320 PF02727 Copper amine oxidase, N2 domain PF555_07320 PF01179 Copper amine oxidase, enzyme domain PF555_07320 PF02728 Copper amine oxidase, N3 domain PF555_07330 PF00171 Aldehyde dehydrogenase family PF555_07335 PF01804 Penicillin amidase PF555_07340 PF12146 Serine aminopeptidase, S33 PF555_07345 PF00108 Thiolase, N-terminal domain PF555_07345 PF02803 Thiolase, C-terminal domain PF555_07350 PF01144 Coenzyme A transferase PF555_07355 PF01144 Coenzyme A transferase PF555_07360 PF00775 Dioxygenase PF555_07360 PF04444 Catechol dioxygenase N terminus PF555_07365 PF02426 Muconolactone delta-isomerase PF555_07370 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain PF555_07370 PF13378 Enolase C-terminal domain-like PF555_07375 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family PF555_07375 PF03466 LysR substrate binding domain PF555_07385 PF00392 Bacterial regulatory proteins, gntR family PF555_07385 PF07729 FCD domain PF555_07390 PF00920 Dehydratase family PF555_07395 PF07690 Major Facilitator Superfamily PF555_07405 PF00171 Aldehyde dehydrogenase family PF555_07415 PF00561 alpha/beta hydrolase fold PF555_07420 PF00724 NADH:flavin oxidoreductase / NADH oxidase family PF555_07420 PF07992 Pyridine nucleotide-disulphide oxidoreductase PF555_07435 PF00376 MerR family regulatory protein PF555_07435 PF09278 MerR, DNA binding PF555_07445 PF07992 Pyridine nucleotide-disulphide oxidoreductase PF555_07455 PF12706 Beta-lactamase superfamily domain PF555_07460 PF08359 YsiA-like protein, C-terminal region PF555_07460 PF00440 Bacterial regulatory proteins, tetR family PF555_07470 PF00857 Isochorismatase family PF555_07475 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family PF555_07475 PF03466 LysR substrate binding domain PF555_07480 PF07995 Glucose / Sorbosone dehydrogenase PF555_07485 PF00999 Sodium/hydrogen exchanger family PF555_07485 PF02254 TrkA-N domain PF555_07495 PF07687 Peptidase dimerisation domain PF555_07495 PF01546 Peptidase family M20/M25/M40 PF555_07505 PF00145 C-5 cytosine-specific DNA methylase PF555_07510 PF00512 His Kinase A (phospho-acceptor) domain PF555_07510 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PF555_07530 PF07690 Major Facilitator Superfamily PF555_07535 PF04909 Amidohydrolase PF555_07545 PF07702 UTRA domain PF555_07545 PF00392 Bacterial regulatory proteins, gntR family PF555_07550 PF08450 SMP-30/Gluconolactonase/LRE-like region PF555_07560 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family PF555_07560 PF03466 LysR substrate binding domain PF555_07585 PF00529 HlyD membrane-fusion protein of T1SS PF555_07585 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion PF555_07600 PF00171 Aldehyde dehydrogenase family PF555_07605 PF00920 Dehydratase family PF555_07615 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family PF555_07615 PF03466 LysR substrate binding domain PF555_07620 PF01370 NAD dependent epimerase/dehydratase family PF555_07625 PF07690 Major Facilitator Superfamily PF555_07630 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase PF555_07630 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase PF555_07635 PF06719 AraC-type transcriptional regulator N-terminus PF555_07635 PF12833 Helix-turn-helix domain PF555_07650 PF00107 Zinc-binding dehydrogenase PF555_07650 PF08240 Alcohol dehydrogenase GroES-like domain PF555_07660 PF01032 FecCD transport family PF555_07665 PF00005 ABC transporter PF555_07685 PF14572 Phosphoribosyl synthetase-associated domain PF555_07685 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase PF555_07710 PF13533 Biotin-lipoyl like PF555_07715 PF07690 Major Facilitator Superfamily PF555_07740 PF01975 Survival protein SurE PF555_07750 PF13291 ACT domain PF555_07750 PF04607 Region found in RelA / SpoT proteins PF555_07750 PF02824 TGS domain PF555_07755 PF01966 HD domain PF555_07755 PF13286 Phosphohydrolase-associated domain PF555_07775 PF02689 Helicase PF555_07775 PF05970 PIF1-like helicase PF555_07810 PF07690 Major Facilitator Superfamily PF555_07810 PF00083 Sugar (and other) transporter PF555_07815 PF03573 outer membrane porin, OprD family PF555_07830 PF13005 zinc-finger binding domain of transposase IS66 PF555_07830 PF13007 Transposase C of IS166 homeodomain PF555_07830 PF13817 IS66 C-terminal element PF555_07830 PF03050 Transposase IS66 family PF555_07835 PF03466 LysR substrate binding domain PF555_07835 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family PF555_07845 PF01614 Bacterial transcriptional regulator PF555_07845 PF09339 IclR helix-turn-helix domain PF555_07880 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain PF555_07880 PF02753 Pili assembly chaperone PapD, C-terminal domain PF555_07885 PF13953 PapC C-terminal domain PF555_07885 PF13954 PapC N-terminal domain PF555_07885 PF00577 Outer membrane usher protein PF555_07890 PF00419 Fimbrial protein PF555_07900 PF00107 Zinc-binding dehydrogenase PF555_07900 PF08240 Alcohol dehydrogenase GroES-like domain PF555_07910 PF00199 Catalase PF555_07930 PF13005 zinc-finger binding domain of transposase IS66 PF555_07930 PF03050 Transposase IS66 family PF555_07930 PF13817 IS66 C-terminal element PF555_07930 PF13007 Transposase C of IS166 homeodomain PF555_07960 PF01244 Membrane dipeptidase (Peptidase family M19) PF555_07965 PF04055 Radical SAM superfamily PF555_07965 PF13186 Iron-sulfur cluster-binding domain PF555_07970 PF05402 Coenzyme PQQ synthesis protein D (PqqD) PF555_07975 PF03070 TENA/THI-4/PQQC family PF555_07980 PF12706 Beta-lactamase superfamily domain PF555_07985 PF08042 PqqA family PF555_07990 PF02503 Polyphosphate kinase middle domain PF555_07990 PF13090 Polyphosphate kinase C-terminal domain 2 PF555_07990 PF13089 Polyphosphate kinase N-terminal domain PF555_07990 PF17941 Polyphosphate kinase C-terminal domain 1 PF555_07995 PF00149 Calcineurin-like phosphoesterase PF555_08005 PF00857 Isochorismatase family PF555_08005 PF00550 Phosphopantetheine attachment site PF555_08010 PF00106 short chain dehydrogenase PF555_08015 PF00005 ABC transporter PF555_08015 PF03459 TOBE domain PF555_08020 PF00528 Binding-protein-dependent transport system inner membrane component PF555_08030 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family PF555_08030 PF03459 TOBE domain PF555_08035 PF00355 Rieske [2Fe-2S] domain PF555_08035 PF00848 Ring hydroxylating alpha subunit (catalytic domain) PF555_08040 PF00866 Ring hydroxylating beta subunit PF555_08045 PF00970 Oxidoreductase FAD-binding domain PF555_08045 PF00111 2Fe-2S iron-sulfur cluster binding domain PF555_08045 PF00175 Oxidoreductase NAD-binding domain PF555_08050 PF12833 Helix-turn-helix domain PF555_08050 PF14525 AraC-binding-like domain PF555_08060 PF01613 Flavin reductase like domain PF555_08075 PF01738 Dienelactone hydrolase family PF555_08080 PF07690 Major Facilitator Superfamily PF555_08085 PF06719 AraC-type transcriptional regulator N-terminus PF555_08085 PF12833 Helix-turn-helix domain PF555_08105 PF00440 Bacterial regulatory proteins, tetR family PF555_08125 PF03466 LysR substrate binding domain PF555_08125 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family PF555_08130 PF01144 Coenzyme A transferase PF555_08135 PF01144 Coenzyme A transferase PF555_08140 PF02667 Short chain fatty acid transporter PF555_08145 PF02803 Thiolase, C-terminal domain PF555_08145 PF00108 Thiolase, N-terminal domain PF555_08150 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family PF555_08150 PF03466 LysR substrate binding domain PF555_08155 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family PF555_08155 PF03466 LysR substrate binding domain PF555_08170 PF10415 Fumarase C C-terminus PF555_08170 PF00206 Lyase PF555_08175 PF00593 TonB dependent receptor PF555_08175 PF07715 TonB-dependent Receptor Plug Domain PF555_08180 PF00083 Sugar (and other) transporter PF555_08195 PF00005 ABC transporter PF555_08200 PF00528 Binding-protein-dependent transport system inner membrane component PF555_08205 PF04069 Substrate binding domain of ABC-type glycine betaine transport system PF555_08220 PF07702 UTRA domain PF555_08220 PF00392 Bacterial regulatory proteins, gntR family PF555_08225 PF02417 Chromate transporter PF555_08230 PF02525 Flavodoxin-like fold PF555_08235 PF01638 HxlR-like helix-turn-helix PF555_08240 PF12833 Helix-turn-helix domain PF555_08240 PF06445 GyrI-like small molecule binding domain PF555_08255 PF01925 Sulfite exporter TauE/SafE PF555_08270 PF04273 Putative phosphatase (DUF442) PF555_08270 PF00753 Metallo-beta-lactamase superfamily PF555_08275 PF02954 Bacterial regulatory protein, Fis family PF555_08275 PF00072 Response regulator receiver domain PF555_08275 PF00158 Sigma-54 interaction domain PF555_08280 PF01062 Bestrophin, RFP-TM, chloride channel PF555_08285 PF08240 Alcohol dehydrogenase GroES-like domain PF555_08285 PF00107 Zinc-binding dehydrogenase PF555_08290 PF00106 short chain dehydrogenase PF555_08295 PF07992 Pyridine nucleotide-disulphide oxidoreductase PF555_08295 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain PF555_08300 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) PF555_08300 PF00364 Biotin-requiring enzyme PF555_08300 PF02817 e3 binding domain PF555_08305 PF02779 Transketolase, pyrimidine binding domain PF555_08305 PF02780 Transketolase, C-terminal domain PF555_08310 PF00676 Dehydrogenase E1 component PF555_08315 PF04055 Radical SAM superfamily PF555_08330 PF08448 PAS fold PF555_08330 PF00990 Diguanylate cyclase, GGDEF domain PF555_08335 PF13005 zinc-finger binding domain of transposase IS66 PF555_08335 PF03050 Transposase IS66 family PF555_08335 PF13007 Transposase C of IS166 homeodomain PF555_08335 PF13817 IS66 C-terminal element PF555_08350 PF01264 Chorismate synthase PF555_08355 PF05175 Methyltransferase small domain PF555_08360 PF00291 Pyridoxal-phosphate dependent enzyme PF555_08370 PF00004 ATPase family associated with various cellular activities (AAA) PF555_08370 PF17862 AAA+ lid domain PF555_08370 PF01434 Peptidase family M41 PF555_08380 PF05166 YcgL domain PF555_08400 PF01612 3'-5' exonuclease PF555_08400 PF00570 HRDC domain PF555_08405 PF13662 Toprim domain PF555_08405 PF02132 RecR protein PF555_08410 PF02575 YbaB/EbfC DNA-binding family PF555_08420 PF01053 Cys/Met metabolism PLP-dependent enzyme PF555_08425 PF00561 alpha/beta hydrolase fold PF555_08430 PF08241 Methyltransferase domain PF555_08460 PF01230 HIT domain PF555_08470 PF13817 IS66 C-terminal element PF555_08470 PF03050 Transposase IS66 family PF555_08470 PF13005 zinc-finger binding domain of transposase IS66 PF555_08470 PF13007 Transposase C of IS166 homeodomain PF555_08510 PF00005 ABC transporter PF555_08515 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion PF555_08525 PF02684 Lipid-A-disaccharide synthetase PF555_08530 PF07715 TonB-dependent Receptor Plug Domain PF555_08530 PF00593 TonB dependent receptor PF555_08550 PF01925 Sulfite exporter TauE/SafE PF555_08555 PF00793 DAHP synthetase I family PF555_08560 PF02654 Cobalamin-5-phosphate synthase PF555_08575 PF02277 Phosphoribosyltransferase PF555_08580 PF02283 Cobinamide kinase / cobinamide phosphate guanyltransferase PF555_08590 PF13419 Haloacid dehalogenase-like hydrolase PF555_08615 PF07715 TonB-dependent Receptor Plug Domain PF555_08615 PF00593 TonB dependent receptor PF555_08620 PF03737 Aldolase/RraA PF555_08630 PF06276 Ferric iron reductase FhuF-like transporter PF555_08630 PF04183 IucA / IucC family PF555_08635 PF04183 IucA / IucC family PF555_08635 PF06276 Ferric iron reductase FhuF-like transporter PF555_08640 PF07690 Major Facilitator Superfamily PF555_08645 PF13434 L-lysine 6-monooxygenase (NADPH-requiring) PF555_08650 PF06276 Ferric iron reductase FhuF-like transporter PF555_08650 PF04183 IucA / IucC family PF555_08655 PF04073 Aminoacyl-tRNA editing domain PF555_08665 PF03109 ABC1 family PF555_08670 PF02771 Acyl-CoA dehydrogenase, N-terminal domain PF555_08670 PF02770 Acyl-CoA dehydrogenase, middle domain PF555_08670 PF00441 Acyl-CoA dehydrogenase, C-terminal domain PF555_08675 PF00441 Acyl-CoA dehydrogenase, C-terminal domain PF555_08675 PF02770 Acyl-CoA dehydrogenase, middle domain PF555_08675 PF02771 Acyl-CoA dehydrogenase, N-terminal domain PF555_08680 PF00487 Fatty acid desaturase PF555_08685 PF12833 Helix-turn-helix domain PF555_08685 PF12852 Cupin PF555_08690 PF09312 SurA N-terminal domain PF555_08690 PF00639 PPIC-type PPIASE domain PF555_08695 PF00216 Bacterial DNA-binding protein PF555_08710 PF02082 Transcriptional regulator PF555_08715 PF00266 Aminotransferase class-V PF555_08720 PF01592 NifU-like N terminal domain PF555_08725 PF01521 Iron-sulphur cluster biosynthesis PF555_08730 PF00226 DnaJ domain PF555_08730 PF07743 HSCB C-terminal oligomerisation domain PF555_08735 PF00012 Hsp70 protein PF555_08740 PF00111 2Fe-2S iron-sulfur cluster binding domain PF555_08755 PF13007 Transposase C of IS166 homeodomain PF555_08755 PF13005 zinc-finger binding domain of transposase IS66 PF555_08755 PF03050 Transposase IS66 family PF555_08755 PF13817 IS66 C-terminal element PF555_08760 PF00211 Adenylate and Guanylate cyclase catalytic domain PF555_08770 PF02559 CarD-like/TRCF domain PF555_08770 PF00270 DEAD/DEAH box helicase PF555_08770 PF00271 Helicase conserved C-terminal domain PF555_08770 PF03461 TRCF domain PF555_08770 PF17757 UvrB interaction domain PF555_08790 PF03737 Aldolase/RraA PF555_08795 PF13460 NAD(P)H-binding PF555_08800 PF01649 Ribosomal protein S20 PF555_08810 PF00459 Inositol monophosphatase family PF555_08825 PF08352 Oligopeptide/dipeptide transporter, C-terminal region PF555_08825 PF00005 ABC transporter PF555_08830 PF00528 Binding-protein-dependent transport system inner membrane component PF555_08835 PF00528 Binding-protein-dependent transport system inner membrane component PF555_08840 PF01432 Peptidase family M3 PF555_08870 PF01618 MotA/TolQ/ExbB proton channel family PF555_08875 PF02472 Biopolymer transport protein ExbD/TolR PF555_08880 PF02472 Biopolymer transport protein ExbD/TolR PF555_08890 PF01274 Malate synthase PF555_08895 PF03969 AFG1-like ATPase PF555_08905 PF00743 Flavin-binding monooxygenase-like PF555_08915 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family PF555_08925 PF00216 Bacterial DNA-binding protein PF555_08930 PF00575 S1 RNA binding domain PF555_08935 PF02224 Cytidylate kinase PF555_08945 PF14437 MafB19-like deaminase PF555_08955 PF03167 Uracil DNA glycosylase superfamily PF555_08965 PF03934 Type II secretion system (T2SS), protein K PF555_08970 PF07963 Prokaryotic N-terminal methylation motif PF555_08970 PF11612 Type II secretion system (T2SS), protein J PF555_08975 PF07963 Prokaryotic N-terminal methylation motif PF555_08975 PF02501 Type II secretion system (T2SS), protein I PF555_08990 PF01026 TatD related DNase PF555_09000 PF09115 DNA polymerase III, delta subunit, C terminal PF555_09005 PF02348 Cytidylyltransferase PF555_09010 PF02606 Tetraacyldisaccharide-1-P 4'-kinase PF555_09015 PF00005 ABC transporter PF555_09015 PF00664 ABC transporter transmembrane region PF555_09025 PF01618 MotA/TolQ/ExbB proton channel family PF555_09030 PF02195 ParB-like nuclease domain PF555_09030 PF17762 HTH domain found in ParB protein PF555_09035 PF13614 AAA domain PF555_09040 PF02527 rRNA small subunit methyltransferase G PF555_09045 PF00483 Nucleotidyl transferase PF555_09050 PF01636 Phosphotransferase enzyme family PF555_09055 PF04453 LPS transport system D PF555_09055 PF03968 OstA-like protein PF555_09060 PF00639 PPIC-type PPIASE domain PF555_09060 PF09312 SurA N-terminal domain PF555_09065 PF01116 Fructose-bisphosphate aldolase class-II PF555_09075 PF00162 Phosphoglycerate kinase PF555_09085 PF02545 Maf-like protein PF555_09090 PF08007 Cupin superfamily protein PF555_09105 PF00375 Sodium:dicarboxylate symporter family PF555_09110 PF06912 Protein of unknown function (DUF1275) PF555_09115 PF09831 Uncharacterized protein conserved in bacteria (DUF2058) PF555_09120 PF00005 ABC transporter PF555_09120 PF00664 ABC transporter transmembrane region PF555_09130 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term PF555_09130 PF12833 Helix-turn-helix domain PF555_09135 PF01597 Glycine cleavage H-protein PF555_09140 PF02146 Sir2 family PF555_09145 PF00474 Sodium:solute symporter family PF555_09150 PF01037 Lrp/AsnC ligand binding domain PF555_09155 PF00171 Aldehyde dehydrogenase family PF555_09155 PF01619 Proline dehydrogenase PF555_09155 PF14850 DNA-binding domain of Proline dehydrogenase PF555_09155 PF18327 Proline utilization A proline dehydrogenase N-terminal domain PF555_09160 PF04229 GrpB protein PF555_09165 PF05958 tRNA (Uracil-5-)-methyltransferase PF555_09175 PF09992 Phosphodiester glycosidase PF555_09185 PF04264 YceI-like domain PF555_09195 PF02779 Transketolase, pyrimidine binding domain PF555_09195 PF00456 Transketolase, thiamine diphosphate binding domain PF555_09195 PF02780 Transketolase, C-terminal domain PF555_09200 PF02772 S-adenosylmethionine synthetase, central domain PF555_09200 PF02773 S-adenosylmethionine synthetase, C-terminal domain PF555_09200 PF00438 S-adenosylmethionine synthetase, N-terminal domain PF555_09225 PF03050 Transposase IS66 family PF555_09225 PF13817 IS66 C-terminal element PF555_09225 PF13007 Transposase C of IS166 homeodomain PF555_09225 PF13005 zinc-finger binding domain of transposase IS66 PF555_09245 PF00905 Penicillin binding protein transpeptidase domain PF555_09260 PF02075 Crossover junction endodeoxyribonuclease RuvC PF555_09265 PF03853 YjeF-related protein N-terminus PF555_09265 PF01256 Carbohydrate kinase PF555_09270 PF08331 Domain of unknown function (DUF1730) PF555_09275 PF04055 Radical SAM superfamily PF555_09275 PF06968 Biotin and Thiamin Synthesis associated domain PF555_09290 PF16970 Type-1 fimbrial protein, A PF555_09295 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain PF555_09295 PF02753 Pili assembly chaperone PapD, C-terminal domain PF555_09300 PF00577 Outer membrane usher protein PF555_09300 PF13954 PapC N-terminal domain PF555_09300 PF13953 PapC C-terminal domain PF555_09335 PF13005 zinc-finger binding domain of transposase IS66 PF555_09335 PF13007 Transposase C of IS166 homeodomain PF555_09335 PF13817 IS66 C-terminal element PF555_09335 PF03050 Transposase IS66 family PF555_09350 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin PF555_09360 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family PF555_09360 PF03466 LysR substrate binding domain PF555_09380 PF00440 Bacterial regulatory proteins, tetR family PF555_09390 PF01709 Transcriptional regulator PF555_09395 PF01037 Lrp/AsnC ligand binding domain PF555_09405 PF00005 ABC transporter PF555_09410 PF00528 Binding-protein-dependent transport system inner membrane component PF555_09415 PF00528 Binding-protein-dependent transport system inner membrane component PF555_09430 PF02771 Acyl-CoA dehydrogenase, N-terminal domain PF555_09430 PF08028 Acyl-CoA dehydrogenase, C-terminal domain PF555_09440 PF00296 Luciferase-like monooxygenase PF555_09445 PF03180 NLPA lipoprotein PF555_09450 PF03180 NLPA lipoprotein PF555_09455 PF00005 ABC transporter PF555_09455 PF09383 NIL domain PF555_09460 PF00528 Binding-protein-dependent transport system inner membrane component PF555_09465 PF01926 50S ribosome-binding GTPase PF555_09465 PF06071 Protein of unknown function (DUF933) PF555_09490 PF03591 AzlC protein PF555_09495 PF05437 Branched-chain amino acid transport protein (AzlD) PF555_09505 PF02222 ATP-grasp domain PF555_09510 PF01909 Nucleotidyltransferase domain PF555_09510 PF08335 GlnD PII-uridylyltransferase PF555_09510 PF01966 HD domain PF555_09515 PF00155 Aminotransferase class I and II PF555_09525 PF13005 zinc-finger binding domain of transposase IS66 PF555_09525 PF13007 Transposase C of IS166 homeodomain PF555_09525 PF13817 IS66 C-terminal element PF555_09525 PF03050 Transposase IS66 family PF555_09545 PF12833 Helix-turn-helix domain PF555_09545 PF12852 Cupin PF555_09550 PF00255 Glutathione peroxidase PF555_09555 PF01641 SelR domain PF555_09560 PF00155 Aminotransferase class I and II PF555_09565 PF00375 Sodium:dicarboxylate symporter family PF555_09570 PF13737 Transposase DDE domain PF555_09575 PF00710 Asparaginase, N-terminal PF555_09575 PF17763 Glutaminase/Asparaginase C-terminal domain PF555_09580 PF07733 Bacterial DNA polymerase III alpha NTPase domain PF555_09580 PF17657 Bacterial DNA polymerase III alpha subunit finger domain PF555_09580 PF01336 OB-fold nucleic acid binding domain PF555_09580 PF02811 PHP domain PF555_09580 PF14579 Helix-hairpin-helix motif PF555_09585 PF00588 SpoU rRNA Methylase family PF555_09590 PF00132 Bacterial transferase hexapeptide (six repeats) PF555_09605 PF07992 Pyridine nucleotide-disulphide oxidoreductase PF555_09605 PF13192 Thioredoxin domain PF555_09620 PF03466 LysR substrate binding domain PF555_09620 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family PF555_09625 PF01758 Sodium Bile acid symporter family PF555_09630 PF01022 Bacterial regulatory protein, arsR family PF555_09635 PF03960 ArsC family PF555_09645 PF01979 Amidohydrolase family PF555_09645 PF13382 Adenine deaminase C-terminal domain PF555_09655 PF03466 LysR substrate binding domain PF555_09655 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family PF555_09665 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin PF555_09670 PF01177 Asp/Glu/Hydantoin racemase PF555_09675 PF02668 Taurine catabolism dioxygenase TauD, TfdA family PF555_09680 PF00528 Binding-protein-dependent transport system inner membrane component PF555_09685 PF00005 ABC transporter PF555_09690 PF04069 Substrate binding domain of ABC-type glycine betaine transport system PF555_09715 PF00083 Sugar (and other) transporter PF555_09720 PF00296 Luciferase-like monooxygenase PF555_09735 PF01654 Cytochrome bd terminal oxidase subunit I PF555_09740 PF02322 Cytochrome bd terminal oxidase subunit II PF555_09750 PF00392 Bacterial regulatory proteins, gntR family PF555_09750 PF00155 Aminotransferase class I and II PF555_09755 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family PF555_09755 PF03466 LysR substrate binding domain PF555_09770 PF00698 Acyl transferase domain PF555_09775 PF10620 Phosphoribosyl-dephospho-CoA transferase MdcG PF555_09785 PF01039 Carboxyl transferase domain PF555_09790 PF06857 Malonate decarboxylase delta subunit (MdcD) PF555_09795 PF01874 ATP:dephospho-CoA triphosphoribosyl transferase PF555_09800 PF16957 Malonate decarboxylase, alpha subunit, transporter PF555_09805 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family PF555_09805 PF03466 LysR substrate binding domain PF555_09815 PF07690 Major Facilitator Superfamily PF555_09830 PF00392 Bacterial regulatory proteins, gntR family PF555_09830 PF00155 Aminotransferase class I and II PF555_09835 PF04172 LrgB-like family PF555_09840 PF03788 LrgA family PF555_09845 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family PF555_09845 PF03466 LysR substrate binding domain PF555_09850 PF14834 Glutathione S-transferase, C-terminal domain PF555_09850 PF02798 Glutathione S-transferase, N-terminal domain PF555_09855 PF02798 Glutathione S-transferase, N-terminal domain PF555_09860 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family PF555_09860 PF03466 LysR substrate binding domain PF555_09870 PF00581 Rhodanese-like domain PF555_09875 PF00132 Bacterial transferase hexapeptide (six repeats) PF555_09885 PF00266 Aminotransferase class-V PF555_09890 PF01810 LysE type translocator PF555_09895 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family PF555_09895 PF03466 LysR substrate binding domain PF555_09905 PF00497 Bacterial extracellular solute-binding proteins, family 3 PF555_09910 PF00497 Bacterial extracellular solute-binding proteins, family 3 PF555_09915 PF00005 ABC transporter PF555_09920 PF00528 Binding-protein-dependent transport system inner membrane component PF555_09925 PF00528 Binding-protein-dependent transport system inner membrane component PF555_09940 PF00072 Response regulator receiver domain PF555_09945 PF00072 Response regulator receiver domain PF555_09945 PF00512 His Kinase A (phospho-acceptor) domain PF555_09945 PF09308 LuxQ, periplasmic PF555_09945 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PF555_09955 PF01037 Lrp/AsnC ligand binding domain PF555_09955 PF13404 AsnC-type helix-turn-helix domain PF555_09965 PF00717 Peptidase S24-like PF555_09990 PF00199 Catalase PF555_09990 PF06628 Catalase-related immune-responsive PF555_09990 PF18011 C-terminal domain found in long catalases PF555_10000 PF02464 Competence-damaged protein PF555_10000 PF18146 Damage-inducible protein CinA KH domain PF555_10000 PF00994 Probable molybdopterin binding domain PF555_10035 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family PF555_10035 PF03466 LysR substrate binding domain PF555_10055 PF00501 AMP-binding enzyme PF555_10055 PF13193 AMP-binding enzyme C-terminal domain PF555_10060 PF00440 Bacterial regulatory proteins, tetR family PF555_10065 PF02771 Acyl-CoA dehydrogenase, N-terminal domain PF555_10065 PF00441 Acyl-CoA dehydrogenase, C-terminal domain PF555_10065 PF02770 Acyl-CoA dehydrogenase, middle domain PF555_10070 PF01039 Carboxyl transferase domain PF555_10075 PF00378 Enoyl-CoA hydratase/isomerase PF555_10080 PF00364 Biotin-requiring enzyme PF555_10080 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain PF555_10080 PF02785 Biotin carboxylase C-terminal domain PF555_10080 PF18140 Propionyl-coenzyme A carboxylase BT domain PF555_10080 PF00289 Biotin carboxylase, N-terminal domain PF555_10085 PF00682 HMGL-like PF555_10090 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family PF555_10090 PF03466 LysR substrate binding domain PF555_10105 PF02770 Acyl-CoA dehydrogenase, middle domain PF555_10105 PF12806 Acetyl-CoA dehydrogenase C-terminal like PF555_10105 PF00441 Acyl-CoA dehydrogenase, C-terminal domain PF555_10105 PF02771 Acyl-CoA dehydrogenase, N-terminal domain PF555_10115 PF07690 Major Facilitator Superfamily PF555_10125 PF01144 Coenzyme A transferase PF555_10130 PF01144 Coenzyme A transferase PF555_10135 PF07690 Major Facilitator Superfamily PF555_10140 PF02771 Acyl-CoA dehydrogenase, N-terminal domain PF555_10140 PF02770 Acyl-CoA dehydrogenase, middle domain PF555_10140 PF00441 Acyl-CoA dehydrogenase, C-terminal domain PF555_10145 PF00378 Enoyl-CoA hydratase/isomerase PF555_10155 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain PF555_10155 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain PF555_10155 PF18321 3-hydroxybutyryl-CoA dehydrogenase reduced Rossmann-fold domain PF555_10160 PF02803 Thiolase, C-terminal domain PF555_10160 PF00108 Thiolase, N-terminal domain PF555_10165 PF09339 IclR helix-turn-helix domain PF555_10170 PF07690 Major Facilitator Superfamily PF555_10175 PF03060 Nitronate monooxygenase PF555_10180 PF00378 Enoyl-CoA hydratase/isomerase PF555_10185 PF09339 IclR helix-turn-helix domain PF555_10190 PF02515 CoA-transferase family III PF555_10195 PF00441 Acyl-CoA dehydrogenase, C-terminal domain PF555_10195 PF02771 Acyl-CoA dehydrogenase, N-terminal domain PF555_10195 PF02770 Acyl-CoA dehydrogenase, middle domain PF555_10200 PF07690 Major Facilitator Superfamily PF555_10205 PF13419 Haloacid dehalogenase-like hydrolase PF555_10210 PF00266 Aminotransferase class-V PF555_10215 PF01266 FAD dependent oxidoreductase PF555_10220 PF00528 Binding-protein-dependent transport system inner membrane component PF555_10225 PF00005 ABC transporter PF555_10225 PF08402 TOBE domain PF555_10235 PF00392 Bacterial regulatory proteins, gntR family PF555_10235 PF07702 UTRA domain PF555_10240 PF01494 FAD binding domain PF555_10245 PF01614 Bacterial transcriptional regulator PF555_10245 PF09339 IclR helix-turn-helix domain PF555_10250 PF02525 Flavodoxin-like fold PF555_10255 PF03466 LysR substrate binding domain PF555_10255 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family PF555_10260 PF02627 Carboxymuconolactone decarboxylase family PF555_10265 PF00171 Aldehyde dehydrogenase family PF555_10275 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin PF555_10285 PF00171 Aldehyde dehydrogenase family PF555_10290 PF00296 Luciferase-like monooxygenase PF555_10295 PF01613 Flavin reductase like domain PF555_10300 PF12697 Alpha/beta hydrolase family PF555_10320 PF01292 Prokaryotic cytochrome b561 PF555_10325 PF00199 Catalase PF555_10350 PF13086 AAA domain PF555_10350 PF13195 Protein of unknown function (DUF4011) PF555_10350 PF13087 AAA domain PF555_10350 PF13195 Protein of unknown function (DUF4011) PF555_10350 PF13087 AAA domain PF555_10350 PF13086 AAA domain PF555_10355 PF03061 Thioesterase superfamily PF555_10360 PF00132 Bacterial transferase hexapeptide (six repeats) PF555_10365 PF07848 PaaX-like protein PF555_10365 PF08223 PaaX-like protein C-terminal domain PF555_10370 PF00501 AMP-binding enzyme PF555_10370 PF14535 AMP-binding enzyme C-terminal domain PF555_10375 PF00108 Thiolase, N-terminal domain PF555_10375 PF02803 Thiolase, C-terminal domain PF555_10380 PF18321 3-hydroxybutyryl-CoA dehydrogenase reduced Rossmann-fold domain PF555_10380 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain PF555_10380 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain PF555_10385 PF00378 Enoyl-CoA hydratase/isomerase PF555_10390 PF00378 Enoyl-CoA hydratase/isomerase PF555_10395 PF00970 Oxidoreductase FAD-binding domain PF555_10395 PF00111 2Fe-2S iron-sulfur cluster binding domain PF555_10395 PF00175 Oxidoreductase NAD-binding domain PF555_10400 PF01883 Iron-sulfur cluster assembly protein PF555_10405 PF05138 Phenylacetic acid catabolic protein PF555_10410 PF06243 Phenylacetic acid degradation B PF555_10415 PF05138 Phenylacetic acid catabolic protein PF555_10420 PF01575 MaoC like domain PF555_10420 PF00171 Aldehyde dehydrogenase family PF555_10425 PF03315 Serine dehydratase beta chain PF555_10425 PF03313 Serine dehydratase alpha chain PF555_10430 PF13520 Amino acid permease PF555_10435 PF00171 Aldehyde dehydrogenase family PF555_10440 PF00083 Sugar (and other) transporter PF555_10450 PF07992 Pyridine nucleotide-disulphide oxidoreductase PF555_10450 PF04324 BFD-like [2Fe-2S] binding domain PF555_10460 PF01266 FAD dependent oxidoreductase PF555_10465 PF05544 Proline racemase PF555_10470 PF00392 Bacterial regulatory proteins, gntR family PF555_10480 PF00701 Dihydrodipicolinate synthetase family PF555_10490 PF09278 MerR, DNA binding PF555_10490 PF00376 MerR family regulatory protein PF555_10500 PF02677 Epoxyqueuosine reductase QueH PF555_10515 PF07690 Major Facilitator Superfamily PF555_10520 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region PF555_10530 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family PF555_10530 PF03466 LysR substrate binding domain PF555_10550 PF05936 Bacterial Type VI secretion, VC_A0110, EvfL, ImpJ, VasE PF555_10555 PF06812 ImpA, N-terminal, type VI secretion system PF555_10560 PF10431 C-terminal, D2-small domain, of ClpB protein PF555_10560 PF17871 AAA lid domain PF555_10560 PF07724 AAA domain (Cdc48 subfamily) PF555_10560 PF00004 ATPase family associated with various cellular activities (AAA) PF555_10570 PF00691 OmpA family PF555_10570 PF01389 OmpA-like transmembrane domain PF555_10580 PF06761 Intracellular multiplication and human macrophage-killing PF555_10580 PF14331 ImcF-related N-terminal domain PF555_10580 PF06744 Type VI secretion protein IcmF C-terminal PF555_10610 PF05943 Type VI secretion protein, EvpB/VC_A0108, tail sheath PF555_10635 PF00005 ABC transporter PF555_10640 PF00497 Bacterial extracellular solute-binding proteins, family 3 PF555_10645 PF01425 Amidase PF555_10650 PF08753 NikR C terminal nickel binding domain PF555_10650 PF01402 Ribbon-helix-helix protein, copG family PF555_10665 PF01638 HxlR-like helix-turn-helix PF555_10670 PF02525 Flavodoxin-like fold PF555_10675 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain PF555_10675 PF00289 Biotin carboxylase, N-terminal domain PF555_10675 PF02785 Biotin carboxylase C-terminal domain PF555_10695 PF00107 Zinc-binding dehydrogenase PF555_10695 PF08240 Alcohol dehydrogenase GroES-like domain PF555_10695 PF13823 Alcohol dehydrogenase GroES-associated PF555_10720 PF05860 haemagglutination activity domain PF555_10720 PF13018 Extended Signal Peptide of Type V secretion system PF555_10720 PF04829 Pre-toxin domain with VENN motif PF555_10720 PF13332 Hemagglutinin repeat PF555_10725 PF08479 POTRA domain, ShlB-type PF555_10725 PF17287 POTRA domain PF555_10725 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB PF555_10730 PF00654 Voltage gated chloride channel PF555_10735 PF00364 Biotin-requiring enzyme PF555_10735 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain PF555_10735 PF02785 Biotin carboxylase C-terminal domain PF555_10735 PF00289 Biotin carboxylase, N-terminal domain PF555_10745 PF07286 Protein of unknown function (DUF1445) PF555_10750 PF03746 LamB/YcsF family PF555_10755 PF01566 Natural resistance-associated macrophage protein PF555_10760 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family PF555_10760 PF03466 LysR substrate binding domain PF555_10780 PF13419 Haloacid dehalogenase-like hydrolase PF555_10800 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain PF555_10800 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain PF555_10820 PF07690 Major Facilitator Superfamily PF555_10835 PF03279 Bacterial lipid A biosynthesis acyltransferase PF555_10840 PF00990 Diguanylate cyclase, GGDEF domain PF555_10840 PF00563 EAL domain PF555_10840 PF03707 Bacterial signalling protein N terminal repeat PF555_10845 PF00892 EamA-like transporter family PF555_10850 PF01037 Lrp/AsnC ligand binding domain PF555_10855 PF05188 MutS domain II PF555_10855 PF05192 MutS domain III PF555_10855 PF05190 MutS family domain IV PF555_10855 PF00488 MutS domain V PF555_10855 PF01624 MutS domain I PF555_10865 PF00037 4Fe-4S binding domain PF555_10865 PF11953 Domain of unknown function (DUF3470) PF555_10875 PF01596 O-methyltransferase PF555_10885 PF00132 Bacterial transferase hexapeptide (six repeats) PF555_10890 PF01205 Uncharacterized protein family UPF0029 PF555_10905 PF03050 Transposase IS66 family PF555_10905 PF13817 IS66 C-terminal element PF555_10905 PF13007 Transposase C of IS166 homeodomain PF555_10905 PF13005 zinc-finger binding domain of transposase IS66 PF555_10925 PF02321 Outer membrane efflux protein PF555_10930 PF00005 ABC transporter PF555_10930 PF12399 Branched-chain amino acid ATP-binding cassette transporter PF555_10935 PF03968 OstA-like protein PF555_10950 PF01380 SIS domain PF555_10950 PF00571 CBS domain PF555_10955 PF09190 DALR domain PF555_10955 PF01406 tRNA synthetases class I (C) catalytic domain PF555_10980 PF01638 HxlR-like helix-turn-helix PF555_10985 PF07690 Major Facilitator Superfamily PF555_11020 PF14748 Pyrroline-5-carboxylate reductase dimerisation PF555_11020 PF03807 NADP oxidoreductase coenzyme F420-dependent PF555_11030 PF00313 'Cold-shock' DNA-binding domain PF555_11035 PF01810 LysE type translocator PF555_11065 PF02601 Exonuclease VII, large subunit PF555_11065 PF13742 OB-fold nucleic acid binding domain PF555_11100 PF00376 MerR family regulatory protein PF555_11100 PF09278 MerR, DNA binding PF555_11105 PF00403 Heavy-metal-associated domain PF555_11115 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family PF555_11115 PF03466 LysR substrate binding domain PF555_11125 PF00848 Ring hydroxylating alpha subunit (catalytic domain) PF555_11125 PF00355 Rieske [2Fe-2S] domain PF555_11130 PF00866 Ring hydroxylating beta subunit PF555_11135 PF00970 Oxidoreductase FAD-binding domain PF555_11135 PF00111 2Fe-2S iron-sulfur cluster binding domain PF555_11135 PF00175 Oxidoreductase NAD-binding domain PF555_11140 PF00106 short chain dehydrogenase PF555_11145 PF03594 Benzoate membrane transport protein PF555_11150 PF07690 Major Facilitator Superfamily PF555_11160 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III PF555_11160 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal PF555_11165 PF00270 DEAD/DEAH box helicase PF555_11165 PF11898 Domain of unknown function (DUF3418) PF555_11165 PF04408 Helicase associated domain (HA2) PF555_11165 PF00271 Helicase conserved C-terminal domain PF555_11165 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold PF555_11170 PF10417 C-terminal domain of 1-Cys peroxiredoxin PF555_11170 PF00578 AhpC/TSA family PF555_11190 PF13192 Thioredoxin domain PF555_11190 PF07992 Pyridine nucleotide-disulphide oxidoreductase PF555_11200 PF00043 Glutathione S-transferase, C-terminal domain PF555_11200 PF02798 Glutathione S-transferase, N-terminal domain PF555_11210 PF02390 Putative methyltransferase PF555_11215 PF00043 Glutathione S-transferase, C-terminal domain PF555_11215 PF13417 Glutathione S-transferase, N-terminal domain PF555_11225 PF00691 OmpA family PF555_11225 PF13488 Glycine zipper PF555_11230 PF01979 Amidohydrolase family PF555_11235 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain PF555_11235 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain PF555_11245 PF01170 Putative RNA methylase family UPF0020 PF555_11245 PF10672 S-adenosylmethionine-dependent methyltransferase PF555_11245 PF02926 THUMP domain PF555_11260 PF00004 ATPase family associated with various cellular activities (AAA) PF555_11260 PF07724 AAA domain (Cdc48 subfamily) PF555_11260 PF17871 AAA lid domain PF555_11260 PF02861 Clp amino terminal domain, pathogenicity island component PF555_11260 PF10431 C-terminal, D2-small domain, of ClpB protein PF555_11275 PF02566 OsmC-like protein PF555_11285 PF13545 Crp-like helix-turn-helix domain PF555_11285 PF00027 Cyclic nucleotide-binding domain PF555_11290 PF00248 Aldo/keto reductase family PF555_11305 PF00709 Adenylosuccinate synthetase PF555_11310 PF13393 Histidyl-tRNA synthetase PF555_11320 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain PF555_11320 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain PF555_11325 PF02272 DHHA1 domain PF555_11325 PF01411 tRNA synthetases class II (A) PF555_11325 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain PF555_11330 PF01842 ACT domain PF555_11330 PF13840 ACT domain PF555_11330 PF00696 Amino acid kinase family PF555_11335 PF02599 Global regulator protein family PF555_11340 PF01351 Ribonuclease HII PF555_11350 PF01292 Prokaryotic cytochrome b561 PF555_11355 PF00962 Adenosine/AMP deaminase PF555_11360 PF00860 Permease family PF555_11370 PF00743 Flavin-binding monooxygenase-like PF555_11375 PF00106 short chain dehydrogenase PF555_11385 PF02678 Pirin PF555_11385 PF17954 Quercetinase C-terminal cupin domain PF555_11390 PF00440 Bacterial regulatory proteins, tetR family PF555_11390 PF17932 Tetracyclin repressor-like, C-terminal domain PF555_11400 PF00106 short chain dehydrogenase PF555_11405 PF00743 Flavin-binding monooxygenase-like PF555_11410 PF04072 Leucine carboxyl methyltransferase PF555_11415 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term PF555_11415 PF12833 Helix-turn-helix domain PF555_11420 PF00743 Flavin-binding monooxygenase-like PF555_11425 PF00106 short chain dehydrogenase PF555_11430 PF07859 alpha/beta hydrolase fold PF555_11435 PF05199 GMC oxidoreductase PF555_11440 PF03573 outer membrane porin, OprD family PF555_11445 PF07690 Major Facilitator Superfamily PF555_11450 PF00884 Sulfatase PF555_11455 PF03781 Sulfatase-modifying factor enzyme 1 PF555_11465 PF00355 Rieske [2Fe-2S] domain PF555_11470 PF00111 2Fe-2S iron-sulfur cluster binding domain PF555_11470 PF00175 Oxidoreductase NAD-binding domain PF555_11485 PF07690 Major Facilitator Superfamily PF555_11490 PF00378 Enoyl-CoA hydratase/isomerase PF555_11495 PF00171 Aldehyde dehydrogenase family PF555_11505 PF02770 Acyl-CoA dehydrogenase, middle domain PF555_11505 PF00441 Acyl-CoA dehydrogenase, C-terminal domain PF555_11505 PF02771 Acyl-CoA dehydrogenase, N-terminal domain PF555_11510 PF03573 outer membrane porin, OprD family PF555_11525 PF07519 Tannase and feruloyl esterase PF555_11530 PF07729 FCD domain PF555_11530 PF00392 Bacterial regulatory proteins, gntR family PF555_11535 PF00171 Aldehyde dehydrogenase family PF555_11540 PF00701 Dihydrodipicolinate synthetase family PF555_11545 PF13378 Enolase C-terminal domain-like PF555_11550 PF07690 Major Facilitator Superfamily PF555_11555 PF04295 D-galactarate dehydratase / Altronate hydrolase, C terminus PF555_11555 PF08666 SAF domain PF555_11560 PF00892 EamA-like transporter family PF555_11565 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term PF555_11565 PF12833 Helix-turn-helix domain PF555_11570 PF00171 Aldehyde dehydrogenase family PF555_11575 PF00324 Amino acid permease PF555_11580 PF04958 Arginine N-succinyltransferase beta subunit PF555_11585 PF00202 Aminotransferase class-III PF555_11595 PF00171 Aldehyde dehydrogenase family PF555_11605 PF00392 Bacterial regulatory proteins, gntR family PF555_11605 PF07729 FCD domain PF555_11615 PF00324 Amino acid permease PF555_11620 PF01266 FAD dependent oxidoreductase PF555_11625 PF00324 Amino acid permease PF555_11635 PF05643 Putative bacterial lipoprotein (DUF799) PF555_11645 PF03783 Curli production assembly/transport component CsgG PF555_11665 PF03180 NLPA lipoprotein PF555_11670 PF05987 Bacterial protein of unknown function (DUF898) PF555_11685 PF00724 NADH:flavin oxidoreductase / NADH oxidase family PF555_11685 PF07992 Pyridine nucleotide-disulphide oxidoreductase PF555_11690 PF00764 Arginosuccinate synthase PF555_11710 PF01979 Amidohydrolase family PF555_11715 PF00929 Exonuclease PF555_11725 PF00593 TonB dependent receptor PF555_11725 PF07715 TonB-dependent Receptor Plug Domain PF555_11730 PF00724 NADH:flavin oxidoreductase / NADH oxidase family PF555_11730 PF07992 Pyridine nucleotide-disulphide oxidoreductase PF555_11735 PF08352 Oligopeptide/dipeptide transporter, C-terminal region PF555_11735 PF00005 ABC transporter PF555_11740 PF00528 Binding-protein-dependent transport system inner membrane component PF555_11740 PF12911 N-terminal TM domain of oligopeptide transport permease C PF555_11745 PF00528 Binding-protein-dependent transport system inner membrane component PF555_11750 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle PF555_11755 PF01464 Transglycosylase SLT domain PF555_11755 PF01464 Transglycosylase SLT domain PF555_11755 PF01476 LysM domain PF555_11755 PF01476 LysM domain PF555_11760 PF00929 Exonuclease PF555_11770 PF09297 NADH pyrophosphatase zinc ribbon domain PF555_11770 PF00293 NUDIX domain PF555_11780 PF04972 BON domain PF555_11785 PF02021 Uncharacterised protein family UPF0102 PF555_11790 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases PF555_11800 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family PF555_11800 PF03466 LysR substrate binding domain PF555_11805 PF01810 LysE type translocator PF555_11815 PF13411 MerR HTH family regulatory protein PF555_11825 PF01494 FAD binding domain PF555_11830 PF01494 FAD binding domain PF555_11835 PF00557 Metallopeptidase family M24 PF555_11835 PF05195 Aminopeptidase P, N-terminal domain PF555_11870 PF00884 Sulfatase PF555_11870 PF08019 Phosphoethanolamine transferase EptA/EptB PF555_11925 PF01551 Peptidase family M23 PF555_11925 PF01464 Transglycosylase SLT domain PF555_11925 PF10145 Phage-related minor tail protein PF555_12100 PF02498 BRO family, N-terminal domain PF555_12100 PF10548 P22AR C-terminal domain PF555_12255 PF00117 Glutamine amidotransferase class-I PF555_12260 PF01433 Peptidase family M1 domain PF555_12260 PF11838 ERAP1-like C-terminal domain PF555_12265 PF00593 TonB dependent receptor PF555_12265 PF07715 TonB-dependent Receptor Plug Domain PF555_12270 PF00591 Glycosyl transferase family, a/b domain PF555_12270 PF02885 Glycosyl transferase family, helical bundle domain PF555_12275 PF00218 Indole-3-glycerol phosphate synthase PF555_12290 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain PF555_12290 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase PF555_12295 PF00111 2Fe-2S iron-sulfur cluster binding domain PF555_12295 PF01799 [2Fe-2S] binding domain PF555_12300 PF01227 GTP cyclohydrolase I PF555_12310 PF00144 Beta-lactamase PF555_12320 PF13817 IS66 C-terminal element PF555_12320 PF13005 zinc-finger binding domain of transposase IS66 PF555_12320 PF13007 Transposase C of IS166 homeodomain PF555_12320 PF03050 Transposase IS66 family PF555_12345 PF05675 Protein of unknown function (DUF817) PF555_12350 PF01208 Uroporphyrinogen decarboxylase (URO-D) PF555_12360 PF00425 chorismate binding enzyme PF555_12365 PF17837 4'-phosphopantetheinyl transferase N-terminal domain PF555_12365 PF01648 4'-phosphopantetheinyl transferase superfamily PF555_12370 PF00975 Thioesterase domain PF555_12375 PF00005 ABC transporter PF555_12380 PF00005 ABC transporter PF555_12380 PF00664 ABC transporter transmembrane region PF555_12385 PF00282 Pyridoxal-dependent decarboxylase conserved domain PF555_12390 PF00857 Isochorismatase family PF555_12390 PF00550 Phosphopantetheine attachment site PF555_12395 PF13193 AMP-binding enzyme C-terminal domain PF555_12395 PF00501 AMP-binding enzyme PF555_12400 PF00501 AMP-binding enzyme PF555_12400 PF00668 Condensation domain PF555_12400 PF00550 Phosphopantetheine attachment site PF555_12405 PF13434 L-lysine 6-monooxygenase (NADPH-requiring) PF555_12410 PF07715 TonB-dependent Receptor Plug Domain PF555_12410 PF00593 TonB dependent receptor PF555_12415 PF01497 Periplasmic binding protein PF555_12420 PF00005 ABC transporter PF555_12425 PF01032 FecCD transport family PF555_12430 PF01032 FecCD transport family PF555_12435 PF13193 AMP-binding enzyme C-terminal domain PF555_12435 PF00975 Thioesterase domain PF555_12435 PF00501 AMP-binding enzyme PF555_12435 PF00550 Phosphopantetheine attachment site PF555_12435 PF00668 Condensation domain PF555_12440 PF00501 AMP-binding enzyme PF555_12440 PF13193 AMP-binding enzyme C-terminal domain PF555_12440 PF00668 Condensation domain PF555_12440 PF00550 Phosphopantetheine attachment site PF555_12450 PF08348 YheO-like PAS domain PF555_12450 PF13309 HTH domain PF555_12455 PF00291 Pyridoxal-phosphate dependent enzyme PF555_12460 PF17954 Quercetinase C-terminal cupin domain PF555_12460 PF02678 Pirin PF555_12480 PF00440 Bacterial regulatory proteins, tetR family PF555_12490 PF13005 zinc-finger binding domain of transposase IS66 PF555_12490 PF13007 Transposase C of IS166 homeodomain PF555_12490 PF13817 IS66 C-terminal element PF555_12490 PF03050 Transposase IS66 family PF555_12510 PF13378 Enolase C-terminal domain-like PF555_12510 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain PF555_12515 PF00083 Sugar (and other) transporter PF555_12520 PF02604 Antitoxin Phd_YefM, type II toxin-antitoxin system PF555_12530 PF00892 EamA-like transporter family PF555_12550 PF01266 FAD dependent oxidoreductase PF555_12550 PF05430 S-adenosyl-L-methionine-dependent methyltransferase PF555_12555 PF07992 Pyridine nucleotide-disulphide oxidoreductase PF555_12555 PF18113 Rubredoxin binding C-terminal domain PF555_12565 PF00171 Aldehyde dehydrogenase family PF555_12570 PF00355 Rieske [2Fe-2S] domain PF555_12570 PF00848 Ring hydroxylating alpha subunit (catalytic domain) PF555_12575 PF02028 BCCT, betaine/carnitine/choline family transporter PF555_12580 PF00083 Sugar (and other) transporter PF555_12585 PF00557 Metallopeptidase family M24 PF555_12590 PF00724 NADH:flavin oxidoreductase / NADH oxidase family PF555_12595 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family PF555_12595 PF03466 LysR substrate binding domain PF555_12600 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term PF555_12600 PF12833 Helix-turn-helix domain PF555_12605 PF01370 NAD dependent epimerase/dehydratase family PF555_12615 PF00561 alpha/beta hydrolase fold PF555_12620 PF00743 Flavin-binding monooxygenase-like PF555_12630 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family PF555_12630 PF03466 LysR substrate binding domain PF555_12635 PF00857 Isochorismatase family PF555_12685 PF04328 Selenoprotein, putative PF555_12690 PF02554 Carbon starvation protein CstA PF555_12690 PF13722 5TM C-terminal transporter carbon starvation CstA PF555_12695 PF01132 Elongation factor P (EF-P) OB domain PF555_12695 PF09285 Elongation factor P, C-terminal PF555_12695 PF08207 Elongation factor P (EF-P) KOW-like domain PF555_12700 PF04055 Radical SAM superfamily PF555_12710 PF00563 EAL domain PF555_12710 PF12792 CSS motif domain associated with EAL PF555_12715 PF01197 Ribosomal protein L31 PF555_12720 PF13593 SBF-like CPA transporter family (DUF4137) PF555_12725 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily PF555_12730 PF07690 Major Facilitator Superfamily PF555_12735 PF13654 AAA domain PF555_12735 PF05362 Lon protease (S16) C-terminal proteolytic domain PF555_12740 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family PF555_12740 PF03466 LysR substrate binding domain PF555_12745 PF01551 Peptidase family M23 PF555_12745 PF01476 LysM domain PF555_12750 PF01975 Survival protein SurE PF555_12765 PF07943 Penicillin-binding protein 5, C-terminal domain PF555_12765 PF00768 D-alanyl-D-alanine carboxypeptidase PF555_12770 PF00132 Bacterial transferase hexapeptide (six repeats) PF555_12775 PF13344 Haloacid dehalogenase-like hydrolase PF555_12775 PF00293 NUDIX domain PF555_12785 PF04356 Protein of unknown function (DUF489) PF555_12790 PF08328 Adenylosuccinate lyase C-terminal PF555_12790 PF00206 Lyase PF555_12805 PF08496 Peptidase family S49 N-terminal PF555_12805 PF01343 Peptidase family S49 PF555_12810 PF00005 ABC transporter PF555_12815 PF00528 Binding-protein-dependent transport system inner membrane component PF555_12820 PF00528 Binding-protein-dependent transport system inner membrane component PF555_12825 PF12849 PBP superfamily domain PF555_12830 PF00324 Amino acid permease PF555_12835 PF00205 Thiamine pyrophosphate enzyme, central domain PF555_12835 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain PF555_12835 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain PF555_12840 PF01037 Lrp/AsnC ligand binding domain PF555_12845 PF00171 Aldehyde dehydrogenase family PF555_12850 PF00282 Pyridoxal-dependent decarboxylase conserved domain PF555_12855 PF00202 Aminotransferase class-III PF555_12870 PF02525 Flavodoxin-like fold PF555_12875 PF00487 Fatty acid desaturase PF555_12880 PF00111 2Fe-2S iron-sulfur cluster binding domain PF555_12880 PF00175 Oxidoreductase NAD-binding domain PF555_12880 PF00970 Oxidoreductase FAD-binding domain PF555_12885 PF00440 Bacterial regulatory proteins, tetR family PF555_12895 PF18339 RapA N-terminal Tudor like domain 1 PF555_12895 PF00176 SNF2 family N-terminal domain PF555_12895 PF12137 RNA polymerase recycling family C-terminal PF555_12895 PF00271 Helicase conserved C-terminal domain PF555_12895 PF18337 RapA N-terminal Tudor like domain PF555_12900 PF00849 RNA pseudouridylate synthase PF555_12910 PF00202 Aminotransferase class-III PF555_12915 PF02581 Thiamine monophosphate synthase PF555_12935 PF03050 Transposase IS66 family PF555_12935 PF13005 zinc-finger binding domain of transposase IS66 PF555_12935 PF13007 Transposase C of IS166 homeodomain PF555_12935 PF13817 IS66 C-terminal element PF555_12960 PF00675 Insulinase (Peptidase family M16) PF555_12960 PF05193 Peptidase M16 inactive domain PF555_12965 PF02567 Phenazine biosynthesis-like protein PF555_12970 PF00375 Sodium:dicarboxylate symporter family PF555_12975 PF03466 LysR substrate binding domain PF555_12975 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family PF555_12980 PF06779 Uncharacterised MFS-type transporter YbfB PF555_13000 PF00180 Isocitrate/isopropylmalate dehydrogenase PF555_13005 PF00849 RNA pseudouridylate synthase PF555_13010 PF03971 Monomeric isocitrate dehydrogenase PF555_13030 PF03441 FAD binding domain of DNA photolyase PF555_13030 PF00875 DNA photolyase PF555_13060 PF02350 UDP-N-acetylglucosamine 2-epimerase PF555_13075 PF03060 Nitronate monooxygenase PF555_13080 PF01207 Dihydrouridine synthase (Dus) PF555_13085 PF07759 Protein of unknown function (DUF1615) PF555_13095 PF01472 PUA domain PF555_13095 PF00696 Amino acid kinase family PF555_13100 PF01926 50S ribosome-binding GTPase PF555_13100 PF01018 GTP1/OBG PF555_13115 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain PF555_13115 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain PF555_13120 PF00892 EamA-like transporter family PF555_13130 PF00271 Helicase conserved C-terminal domain PF555_13130 PF04851 Type III restriction enzyme, res subunit PF555_13130 PF02151 UvrB/uvrC motif PF555_13130 PF17757 UvrB interaction domain PF555_13130 PF12344 Ultra-violet resistance protein B PF555_13140 PF17151 Periplasmic sensor domain PF555_13140 PF00990 Diguanylate cyclase, GGDEF domain PF555_13150 PF00155 Aminotransferase class I and II PF555_13160 PF00012 Hsp70 protein PF555_13190 PF00106 short chain dehydrogenase PF555_13195 PF06175 tRNA-(MS[2]IO[6]A)-hydroxylase (MiaE) PF555_13200 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ PF555_13205 PF02565 Recombination protein O C terminal PF555_13205 PF11967 Recombination protein O N terminal PF555_13215 PF07650 KH domain PF555_13215 PF01926 50S ribosome-binding GTPase PF555_13220 PF00035 Double-stranded RNA binding motif PF555_13220 PF14622 Ribonuclease-III-like PF555_13230 PF10502 Signal peptidase, peptidase S26 PF555_13235 PF03144 Elongation factor Tu domain 2 PF555_13235 PF06421 GTP-binding protein LepA C-terminus PF555_13235 PF00679 Elongation factor G C-terminus PF555_13235 PF00009 Elongation factor Tu GTP binding domain PF555_13245 PF13180 PDZ domain PF555_13250 PF00890 FAD binding domain PF555_13250 PF02910 Fumarate reductase flavoprotein C-term PF555_13260 PF02223 Thymidylate kinase PF555_13265 PF02618 YceG-like family PF555_13270 PF01063 Amino-transferase class IV PF555_13285 PF00528 Binding-protein-dependent transport system inner membrane component PF555_13290 PF00528 Binding-protein-dependent transport system inner membrane component PF555_13295 PF12857 TOBE-like domain PF555_13295 PF00005 ABC transporter PF555_13300 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family PF555_13300 PF03466 LysR substrate binding domain PF555_13310 PF00132 Bacterial transferase hexapeptide (six repeats) PF555_13310 PF14602 Hexapeptide repeat of succinyl-transferase PF555_13310 PF14805 Tetrahydrodipicolinate N-succinyltransferase N-terminal PF555_13320 PF06508 Queuosine biosynthesis protein QueC PF555_13335 PF00578 AhpC/TSA family PF555_13345 PF01467 Cytidylyltransferase-like PF555_13345 PF00293 NUDIX domain PF555_13350 PF00378 Enoyl-CoA hydratase/isomerase PF555_13355 PF01784 NIF3 (NGG1p interacting factor 3) PF555_13365 PF07690 Major Facilitator Superfamily PF555_13370 PF02769 AIR synthase related protein, C-terminal domain PF555_13370 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain PF555_13370 PF18076 Formylglycinamide ribonucleotide amidotransferase N-terminal PF555_13375 PF01966 HD domain PF555_13380 PF07499 RuvA, C-terminal domain PF555_13380 PF01330 RuvA N terminal domain PF555_13385 PF05491 RuvB C-terminal winged helix domain PF555_13385 PF17864 RuvB AAA lid domain PF555_13385 PF05496 Holliday junction DNA helicase RuvB P-loop domain PF555_13390 PF07687 Peptidase dimerisation domain PF555_13390 PF01546 Peptidase family M20/M25/M40 PF555_13395 PF03061 Thioesterase superfamily PF555_13400 PF01618 MotA/TolQ/ExbB proton channel family PF555_13405 PF02472 Biopolymer transport protein ExbD/TolR PF555_13415 PF07676 WD40-like Beta Propeller Repeat PF555_13415 PF04052 TolB amino-terminal domain PF555_13420 PF00691 OmpA family PF555_13430 PF00316 Fructose-1-6-bisphosphatase, N-terminal domain PF555_13435 PF00588 SpoU rRNA Methylase family PF555_13435 PF08032 RNA 2'-O ribose methyltransferase substrate binding PF555_13465 PF13005 zinc-finger binding domain of transposase IS66 PF555_13465 PF13007 Transposase C of IS166 homeodomain PF555_13465 PF13817 IS66 C-terminal element PF555_13465 PF03050 Transposase IS66 family PF555_13485 PF13007 Transposase C of IS166 homeodomain PF555_13485 PF13005 zinc-finger binding domain of transposase IS66 PF555_13485 PF13817 IS66 C-terminal element PF555_13485 PF03050 Transposase IS66 family PF555_13795 PF01812 5-formyltetrahydrofolate cyclo-ligase family PF555_13800 PF00691 OmpA family PF555_13800 PF04355 SmpA / OmlA family PF555_13805 PF13018 Extended Signal Peptide of Type V secretion system PF555_13805 PF03895 YadA-like membrane anchor domain PF555_13805 PF05658 Head domain of trimeric autotransporter adhesin PF555_13805 PF05662 Coiled stalk of trimeric autotransporter adhesin PF555_13810 PF02190 ATP-dependent protease La (LON) substrate-binding domain PF555_13810 PF00004 ATPase family associated with various cellular activities (AAA) PF555_13810 PF05362 Lon protease (S16) C-terminal proteolytic domain PF555_13815 PF02590 Predicted SPOUT methyltransferase PF555_13820 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase PF555_13830 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain PF555_13830 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase PF555_13835 PF04060 Putative Fe-S cluster PF555_13840 PF10576 Iron-sulfur binding domain of endonuclease III PF555_13840 PF00730 HhH-GPD superfamily base excision DNA repair protein PF555_13840 PF00633 Helix-hairpin-helix motif PF555_13850 PF05191 Adenylate kinase, active site lid PF555_13865 PF00905 Penicillin binding protein transpeptidase domain PF555_13865 PF03717 Penicillin-binding Protein dimerisation domain PF555_13880 PF02492 CobW/HypB/UreG, nucleotide-binding domain PF555_13885 PF01730 UreF PF555_13890 PF02814 UreE urease accessory protein, N-terminal domain PF555_13890 PF05194 UreE urease accessory protein, C-terminal domain PF555_13895 PF01979 Amidohydrolase family PF555_13895 PF00449 Urease alpha-subunit, N-terminal domain PF555_13900 PF00699 Urease beta subunit PF555_13905 PF00547 Urease, gamma subunit PF555_13910 PF01774 UreD urease accessory protein PF555_13925 PF00463 Isocitrate lyase family PF555_13930 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family PF555_13930 PF03466 LysR substrate binding domain PF555_13935 PF01595 Cyclin M transmembrane N-terminal domain PF555_13935 PF03471 Transporter associated domain PF555_13935 PF00571 CBS domain PF555_13940 PF03600 Citrate transporter PF555_13955 PF00009 Elongation factor Tu GTP binding domain PF555_13960 PF01507 Phosphoadenosine phosphosulfate reductase family PF555_13970 PF14052 Capsule assembly protein Wzi PF555_13975 PF00152 tRNA synthetases class II (D, K and N) PF555_13975 PF01336 OB-fold nucleic acid binding domain PF555_13990 PF00301 Rubredoxin PF555_13995 PF07992 Pyridine nucleotide-disulphide oxidoreductase PF555_13995 PF18113 Rubredoxin binding C-terminal domain PF555_14000 PF00561 alpha/beta hydrolase fold PF555_14005 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family PF555_14005 PF03466 LysR substrate binding domain PF555_14020 PF13090 Polyphosphate kinase C-terminal domain 2 PF555_14020 PF02503 Polyphosphate kinase middle domain PF555_14020 PF17941 Polyphosphate kinase C-terminal domain 1 PF555_14020 PF13089 Polyphosphate kinase N-terminal domain PF555_14025 PF00912 Transglycosylase PF555_14030 PF01694 Rhomboid family PF555_14040 PF00005 ABC transporter PF555_14045 PF13472 GDSL-like Lipase/Acylhydrolase family PF555_14050 PF00484 Carbonic anhydrase PF555_14055 PF00561 alpha/beta hydrolase fold PF555_14065 PF00593 TonB dependent receptor PF555_14065 PF07715 TonB-dependent Receptor Plug Domain PF555_14075 PF01521 Iron-sulphur cluster biosynthesis PF555_14075 PF01106 NifU-like domain PF555_14085 PF00884 Sulfatase PF555_14090 PF03781 Sulfatase-modifying factor enzyme 1 PF555_14105 PF00291 Pyridoxal-phosphate dependent enzyme PF555_14110 PF01384 Phosphate transporter family PF555_14115 PF02310 B12 binding domain PF555_14115 PF02607 B12 binding domain PF555_14115 PF02965 Vitamin B12 dependent methionine synthase, activation domain PF555_14115 PF00809 Pterin binding enzyme PF555_14115 PF02574 Homocysteine S-methyltransferase PF555_14120 PF02779 Transketolase, pyrimidine binding domain PF555_14120 PF02780 Transketolase, C-terminal domain PF555_14125 PF00456 Transketolase, thiamine diphosphate binding domain PF555_14130 PF07690 Major Facilitator Superfamily PF555_14140 PF03466 LysR substrate binding domain PF555_14140 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family PF555_14150 PF01263 Aldose 1-epimerase PF555_14155 PF07690 Major Facilitator Superfamily PF555_14160 PF02311 AraC-like ligand binding domain PF555_14160 PF12833 Helix-turn-helix domain PF555_14165 PF04960 Glutaminase PF555_14170 PF01327 Polypeptide deformylase PF555_14175 PF07690 Major Facilitator Superfamily PF555_14185 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain PF555_14185 PF00205 Thiamine pyrophosphate enzyme, central domain PF555_14185 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain PF555_14190 PF00171 Aldehyde dehydrogenase family PF555_14195 PF01958 Domain of unknown function DUF108 PF555_14195 PF03447 Homoserine dehydrogenase, NAD binding domain PF555_14205 PF12697 Alpha/beta hydrolase family PF555_14215 PF07690 Major Facilitator Superfamily PF555_14220 PF14759 Reductase C-terminal PF555_14220 PF07992 Pyridine nucleotide-disulphide oxidoreductase PF555_14225 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily PF555_14235 PF00355 Rieske [2Fe-2S] domain PF555_14245 PF00355 Rieske [2Fe-2S] domain PF555_14250 PF09339 IclR helix-turn-helix domain PF555_14250 PF01614 Bacterial transcriptional regulator PF555_14265 PF00378 Enoyl-CoA hydratase/isomerase PF555_14275 PF00535 Glycosyl transferase family 2 PF555_14280 PF14883 Hypothetical glycosyl hydrolase family 13 PF555_14280 PF01522 Polysaccharide deacetylase PF555_14285 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase PF555_14290 PF07152 YaeQ protein PF555_14295 PF00375 Sodium:dicarboxylate symporter family PF555_14300 PF07683 Cobalamin synthesis protein cobW C-terminal domain PF555_14300 PF02492 CobW/HypB/UreG, nucleotide-binding domain PF555_14310 PF03061 Thioesterase superfamily PF555_14320 PF02028 BCCT, betaine/carnitine/choline family transporter PF555_14325 PF02028 BCCT, betaine/carnitine/choline family transporter PF555_14330 PF13977 BetI-type transcriptional repressor, C-terminal PF555_14330 PF00440 Bacterial regulatory proteins, tetR family PF555_14335 PF00171 Aldehyde dehydrogenase family PF555_14340 PF00732 GMC oxidoreductase PF555_14340 PF05199 GMC oxidoreductase PF555_14345 PF03050 Transposase IS66 family PF555_14345 PF13817 IS66 C-terminal element PF555_14345 PF13007 Transposase C of IS166 homeodomain PF555_14345 PF13005 zinc-finger binding domain of transposase IS66 PF555_14360 PF06039 Malate:quinone oxidoreductase (Mqo) PF555_14370 PF02574 Homocysteine S-methyltransferase PF555_14375 PF13520 Amino acid permease PF555_14405 PF10106 Uncharacterized protein conserved in bacteria (DUF2345) PF555_14405 PF04717 Type VI secretion system, phage-baseplate injector PF555_14405 PF13296 Putative type VI secretion system Rhs element Vgr PF555_14425 PF00083 Sugar (and other) transporter PF555_14455 PF02384 N-6 DNA Methylase PF555_14455 PF12161 HsdM N-terminal domain PF555_14460 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) PF555_14460 PF18766 SWI2/SNF2 ATPase PF555_14460 PF11867 Domain of unknown function (DUF3387) PF555_14475 PF02384 N-6 DNA Methylase PF555_14490 PF13007 Transposase C of IS166 homeodomain PF555_14490 PF13005 zinc-finger binding domain of transposase IS66 PF555_14490 PF03050 Transposase IS66 family PF555_14490 PF13817 IS66 C-terminal element PF555_14525 PF00436 Single-strand binding protein family PF555_14570 PF00589 Phage integrase family PF555_14570 PF13356 Arm DNA-binding domain PF555_14585 PF07690 Major Facilitator Superfamily PF555_14590 PF13533 Biotin-lipoyl like PF555_14595 PF03061 Thioesterase superfamily PF555_14600 PF00490 Delta-aminolevulinic acid dehydratase PF555_14605 PF01266 FAD dependent oxidoreductase PF555_14610 PF01370 NAD dependent epimerase/dehydratase family PF555_14610 PF08338 Domain of unknown function (DUF1731) PF555_14630 PF12320 Type 5 capsule protein repressor C-terminal domain PF555_14630 PF00149 Calcineurin-like phosphoesterase PF555_14640 PF01168 Alanine racemase, N-terminal domain PF555_14645 PF00437 Type II/IV secretion system protein PF555_14650 PF00437 Type II/IV secretion system protein PF555_14655 PF01475 Ferric uptake regulator family PF555_14660 PF04355 SmpA / OmlA family PF555_14665 PF03658 RnfH family Ubiquitin PF555_14675 PF01814 Hemerythrin HHE cation binding domain PF555_14680 PF13230 Glutamine amidotransferases class-II PF555_14690 PF00696 Amino acid kinase family PF555_14695 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II PF555_14695 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III PF555_14695 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain PF555_14695 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I PF555_14700 PF00692 dUTPase PF555_14705 PF00580 UvrD/REP helicase N-terminal domain PF555_14705 PF13361 UvrD-like helicase C-terminal domain PF555_14710 PF00691 OmpA family PF555_14710 PF13488 Glycine zipper PF555_14715 PF01553 Acyltransferase PF555_14725 PF03775 Septum formation inhibitor MinC, C-terminal domain PF555_14730 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain PF555_14735 PF03776 Septum formation topological specificity factor MinE PF555_14745 PF01810 LysE type translocator PF555_14750 PF13491 4TM region of DNA translocase FtsK/SpoIIIE PF555_14750 PF17854 FtsK alpha domain PF555_14750 PF09397 Ftsk gamma domain PF555_14750 PF01580 FtsK/SpoIIIE family PF555_14755 PF07992 Pyridine nucleotide-disulphide oxidoreductase PF555_14760 PF03588 Leucyl/phenylalanyl-tRNA protein transferase PF555_14765 PF04377 Arginine-tRNA-protein transferase, C terminus PF555_14765 PF04376 Arginine-tRNA-protein transferase, N terminus PF555_14770 PF00583 Acetyltransferase (GNAT) family PF555_14785 PF00009 Elongation factor Tu GTP binding domain PF555_14785 PF03143 Elongation factor Tu C-terminal domain PF555_14785 PF03144 Elongation factor Tu domain 2 PF555_14790 PF00679 Elongation factor G C-terminus PF555_14790 PF14492 Elongation Factor G, domain II PF555_14790 PF03764 Elongation factor G, domain IV PF555_14790 PF00009 Elongation factor Tu GTP binding domain PF555_14790 PF03144 Elongation factor Tu domain 2 PF555_14795 PF00177 Ribosomal protein S7p/S5e PF555_14800 PF00164 Ribosomal protein S12/S23 PF555_14810 PF00109 Beta-ketoacyl synthase, N-terminal domain PF555_14810 PF02801 Beta-ketoacyl synthase, C-terminal domain PF555_14815 PF03653 Uncharacterised protein family (UPF0093) PF555_14820 PF02678 Pirin PF555_14820 PF05726 Pirin C-terminal cupin domain PF555_14830 PF00795 Carbon-nitrogen hydrolase PF555_14830 PF02540 NAD synthase PF555_14845 PF00175 Oxidoreductase NAD-binding domain PF555_14845 PF00111 2Fe-2S iron-sulfur cluster binding domain PF555_14845 PF00970 Oxidoreductase FAD-binding domain PF555_14850 PF00171 Aldehyde dehydrogenase family PF555_14855 PF00355 Rieske [2Fe-2S] domain PF555_14855 PF00848 Ring hydroxylating alpha subunit (catalytic domain) PF555_14860 PF07859 alpha/beta hydrolase fold PF555_14865 PF02028 BCCT, betaine/carnitine/choline family transporter PF555_14870 PF00180 Isocitrate/isopropylmalate dehydrogenase PF555_14875 PF03466 LysR substrate binding domain PF555_14875 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family PF555_14895 PF00037 4Fe-4S binding domain PF555_14900 PF01467 Cytidylyltransferase-like PF555_14905 PF01668 SmpB protein PF555_14910 PF03358 NADPH-dependent FMN reductase PF555_14915 PF02578 Multi-copper polyphenol oxidoreductase laccase PF555_14920 PF00849 RNA pseudouridylate synthase PF555_14920 PF01479 S4 domain PF555_14925 PF13525 Outer membrane lipoprotein PF555_14930 PF08275 DNA primase catalytic core, N-terminal domain PF555_14930 PF08278 DNA primase DnaG DnaB-binding PF555_14930 PF01807 CHC2 zinc finger PF555_14930 PF10410 DnaB-helicase binding domain of primase PF555_14935 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain PF555_14935 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain PF555_14935 PF01488 Shikimate / quinate 5-dehydrogenase PF555_14945 PF03550 Outer membrane lipoprotein LolB PF555_14950 PF08544 GHMP kinases C terminal PF555_14950 PF00288 GHMP kinases N terminal domain PF555_14975 PF14572 Phosphoribosyl synthetase-associated domain PF555_14975 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase PF555_14980 PF01386 Ribosomal L25p family PF555_14985 PF01195 Peptidyl-tRNA hydrolase PF555_14990 PF02261 Aspartate decarboxylase PF555_15005 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase PF555_15015 PF02581 Thiamine monophosphate synthase PF555_15015 PF03070 TENA/THI-4/PQQC family PF555_15015 PF08543 Phosphomethylpyrimidine kinase PF555_15020 PF04972 BON domain PF555_15020 PF01476 LysM domain PF555_15025 PF00550 Phosphopantetheine attachment site PF555_15035 PF00698 Acyl transferase domain PF555_15040 PF01783 Ribosomal L32p protein family PF555_15045 PF02620 Large ribosomal RNA subunit accumulation protein YceD PF555_15050 PF04315 Elongation factor P hydroxylase PF555_15055 PF01300 Telomere recombination PF555_15060 PF02616 Segregation and condensation protein ScpA PF555_15065 PF04079 Segregation and condensation complex subunit ScpB PF555_15070 PF00849 RNA pseudouridylate synthase PF555_15070 PF01479 S4 domain PF555_15085 PF00155 Aminotransferase class I and II PF555_15090 PF04055 Radical SAM superfamily PF555_15090 PF00202 Aminotransferase class-III PF555_15090 PF06968 Biotin and Thiamin Synthesis associated domain PF555_15095 PF12697 Alpha/beta hydrolase family PF555_15095 PF08241 Methyltransferase domain PF555_15100 PF02358 Trehalose-phosphatase PF555_15105 PF00982 Glycosyltransferase family 20 PF555_15110 PF07690 Major Facilitator Superfamily PF555_15115 PF00210 Ferritin-like domain PF555_15120 PF03119 NAD-dependent DNA ligase C4 zinc finger domain PF555_15120 PF12826 Helix-hairpin-helix motif PF555_15120 PF00533 BRCA1 C Terminus (BRCT) domain PF555_15120 PF01653 NAD-dependent DNA ligase adenylation domain PF555_15120 PF03120 NAD-dependent DNA ligase OB-fold domain PF555_15130 PF02463 RecF/RecN/SMC N terminal domain PF555_15130 PF06470 SMC proteins Flexible Hinge Domain PF555_15140 PF01925 Sulfite exporter TauE/SafE PF555_15150 PF03309 Type III pantothenate kinase PF555_15155 PF00448 SRP54-type protein, GTPase domain PF555_15155 PF02881 SRP54-type protein, helical bundle domain PF555_15155 PF02978 Signal peptide binding domain PF555_15165 PF01207 Dihydrouridine synthase (Dus) PF555_15195 PF00692 dUTPase PF555_15210 PF01048 Phosphorylase superfamily PF555_15215 PF10609 NUBPL iron-transfer P-loop NTPase PF555_15225 PF09334 tRNA synthetases class I (M) PF555_15225 PF01588 Putative tRNA binding domain PF555_15250 PF13533 Biotin-lipoyl like PF555_15255 PF00291 Pyridoxal-phosphate dependent enzyme PF555_15270 PF05552 Conserved TM helix PF555_15285 PF00175 Oxidoreductase NAD-binding domain PF555_15285 PF00970 Oxidoreductase FAD-binding domain PF555_15290 PF03466 LysR substrate binding domain PF555_15290 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family PF555_15300 PF00313 'Cold-shock' DNA-binding domain PF555_15310 PF00361 Proton-conducting membrane transporter PF555_15315 PF00361 Proton-conducting membrane transporter PF555_15320 PF00361 Proton-conducting membrane transporter PF555_15320 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus PF555_15325 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L PF555_15330 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 PF555_15335 PF12838 4Fe-4S dicluster domain PF555_15340 PF00146 NADH dehydrogenase PF555_15345 PF04879 Molybdopterin oxidoreductase Fe4S4 domain PF555_15345 PF00384 Molybdopterin oxidoreductase PF555_15345 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region PF555_15350 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit PF555_15350 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region PF555_15350 PF10531 SLBB domain PF555_15360 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit PF555_15360 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit PF555_15365 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit PF555_15370 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 PF555_15375 PF00990 Diguanylate cyclase, GGDEF domain PF555_15375 PF17158 Membrane-associated sensor, integral membrane domain PF555_15385 PF00672 HAMP domain PF555_15385 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PF555_15385 PF00512 His Kinase A (phospho-acceptor) domain PF555_15390 PF00072 Response regulator receiver domain PF555_15390 PF00486 Transcriptional regulatory protein, C terminal PF555_15400 PF03477 ATP cone domain PF555_15400 PF02867 Ribonucleotide reductase, barrel domain PF555_15400 PF00317 Ribonucleotide reductase, all-alpha domain PF555_15410 PF00268 Ribonucleotide reductase, small chain PF555_15425 PF17074 Darcynin, domain of unknown function PF555_15460 PF01613 Flavin reductase like domain PF555_15465 PF08267 Cobalamin-independent synthase, N-terminal domain PF555_15465 PF01717 Cobalamin-independent synthase, Catalytic domain PF555_15475 PF03466 LysR substrate binding domain PF555_15475 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family PF555_15480 PF01810 LysE type translocator PF555_15485 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family PF555_15485 PF03466 LysR substrate binding domain PF555_15490 PF07690 Major Facilitator Superfamily PF555_15500 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family PF555_15500 PF03466 LysR substrate binding domain PF555_15505 PF00890 FAD binding domain PF555_15505 PF14537 Cytochrome c3 PF555_15520 PF00440 Bacterial regulatory proteins, tetR family PF555_15520 PF17932 Tetracyclin repressor-like, C-terminal domain PF555_15525 PF02515 CoA-transferase family III PF555_15530 PF07690 Major Facilitator Superfamily PF555_15535 PF00441 Acyl-CoA dehydrogenase, C-terminal domain PF555_15535 PF02770 Acyl-CoA dehydrogenase, middle domain PF555_15535 PF02771 Acyl-CoA dehydrogenase, N-terminal domain PF555_15540 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family PF555_15540 PF03466 LysR substrate binding domain PF555_15545 PF08240 Alcohol dehydrogenase GroES-like domain PF555_15545 PF00107 Zinc-binding dehydrogenase PF555_15550 PF00962 Adenosine/AMP deaminase PF555_15575 PF02445 Quinolinate synthetase A protein PF555_15580 PF01960 ArgJ family PF555_15585 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain PF555_15585 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain PF555_15590 PF00893 Small Multidrug Resistance protein PF555_15605 PF07731 Multicopper oxidase PF555_15605 PF07732 Multicopper oxidase PF555_15605 PF00394 Multicopper oxidase PF555_15620 PF00834 Ribulose-phosphate 3 epimerase family PF555_15630 PF00756 Putative esterase PF555_15640 PF04445 Putative SAM-dependent methyltransferase PF555_15645 PF00814 Glycoprotease family PF555_15650 PF00132 Bacterial transferase hexapeptide (six repeats) PF555_15655 PF00293 NUDIX domain PF555_15675 PF03050 Transposase IS66 family PF555_15675 PF13817 IS66 C-terminal element PF555_15675 PF13007 Transposase C of IS166 homeodomain PF555_15675 PF13005 zinc-finger binding domain of transposase IS66 PF555_15715 PF04715 Anthranilate synthase component I, N terminal region PF555_15715 PF00425 chorismate binding enzyme PF555_15720 PF00155 Aminotransferase class I and II PF555_15725 PF00815 Histidinol dehydrogenase PF555_15730 PF01634 ATP phosphoribosyltransferase PF555_15735 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) PF555_15740 PF01722 BolA-like protein PF555_15745 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein PF555_15750 PF04552 Sigma-54, DNA binding domain PF555_15750 PF04963 Sigma-54 factor, core binding domain PF555_15750 PF00309 Sigma-54 factor, Activator interacting domain (AID) PF555_15795 PF00795 Carbon-nitrogen hydrolase PF555_15805 PF01047 MarR family PF555_15810 PF02566 OsmC-like protein PF555_15815 PF00437 Type II/IV secretion system protein PF555_15835 PF00476 DNA polymerase family A PF555_15835 PF01367 5'-3' exonuclease, C-terminal SAM fold PF555_15835 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain PF555_15835 PF01612 3'-5' exonuclease PF555_15840 PF02325 YGGT family PF555_15845 PF14748 Pyrroline-5-carboxylate reductase dimerisation PF555_15845 PF03807 NADP oxidoreductase coenzyme F420-dependent PF555_15850 PF09179 TilS substrate binding domain PF555_15850 PF01171 PP-loop family PF555_15850 PF11734 TilS substrate C-terminal domain PF555_15855 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit PF555_15860 PF02541 Ppx/GppA phosphatase family PF555_15865 PF00085 Thioredoxin PF555_15870 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain PF555_15870 PF07498 Rho termination factor, N-terminal domain PF555_15870 PF07497 Rho termination factor, RNA-binding domain PF555_15885 PF00216 Bacterial DNA-binding protein PF555_15890 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain PF555_15890 PF03484 tRNA synthetase B5 domain PF555_15890 PF03147 Ferredoxin-fold anticodon binding domain PF555_15890 PF03483 B3/4 domain PF555_15890 PF01588 Putative tRNA binding domain PF555_15895 PF01409 tRNA synthetases class II core domain (F) PF555_15895 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain PF555_15915 PF00453 Ribosomal protein L20 PF555_15920 PF01632 Ribosomal protein L35 PF555_15930 PF07690 Major Facilitator Superfamily PF555_15935 PF09335 SNARE associated Golgi protein PF555_15940 PF02798 Glutathione S-transferase, N-terminal domain PF555_15940 PF00043 Glutathione S-transferase, C-terminal domain PF555_15945 PF00707 Translation initiation factor IF-3, C-terminal domain PF555_15945 PF05198 Translation initiation factor IF-3, N-terminal domain PF555_15950 PF03129 Anticodon binding domain PF555_15950 PF02824 TGS domain PF555_15950 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) PF555_15950 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain PF555_15955 PF13193 AMP-binding enzyme C-terminal domain PF555_15955 PF00501 AMP-binding enzyme PF555_15960 PF04751 Protein of unknown function (DUF615) PF555_15965 PF00381 PTS HPr component phosphorylation site PF555_15970 PF03668 P-loop ATPase protein family PF555_15975 PF02569 Pantoate-beta-alanine ligase PF555_15980 PF02548 Ketopantoate hydroxymethyltransferase PF555_15985 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) PF555_15990 PF01743 Poly A polymerase head domain PF555_15990 PF12626 Polymerase A arginine-rich C-terminus PF555_15990 PF12627 Probable RNA and SrmB- binding site of polymerase A PF555_16000 PF03819 MazG nucleotide pyrophosphohydrolase domain PF555_16010 PF13291 ACT domain PF555_16010 PF02824 TGS domain PF555_16010 PF04607 Region found in RelA / SpoT proteins PF555_16015 PF05958 tRNA (Uracil-5-)-methyltransferase PF555_16025 PF00291 Pyridoxal-phosphate dependent enzyme PF555_16030 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PF555_16030 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) PF555_16030 PF00072 Response regulator receiver domain PF555_16030 PF01627 Hpt domain PF555_16030 PF00672 HAMP domain PF555_16030 PF00512 His Kinase A (phospho-acceptor) domain PF555_16035 PF00378 Enoyl-CoA hydratase/isomerase PF555_16040 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase PF555_16040 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase PF555_16045 PF01261 Xylose isomerase-like TIM barrel PF555_16055 PF00106 short chain dehydrogenase PF555_16060 PF02233 NAD(P) transhydrogenase beta subunit PF555_16065 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch PF555_16070 PF01262 Alanine dehydrogenase/PNT, C-terminal domain PF555_16070 PF05222 Alanine dehydrogenase/PNT, N-terminal domain PF555_16075 PF00892 EamA-like transporter family PF555_16085 PF07690 Major Facilitator Superfamily PF555_16090 PF01207 Dihydrouridine synthase (Dus) PF555_16100 PF03466 LysR substrate binding domain PF555_16100 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family PF555_16110 PF00899 ThiF family PF555_16115 PF00330 Aconitase family (aconitate hydratase) PF555_16115 PF00694 Aconitase C-terminal domain PF555_16120 PF01026 TatD related DNase PF555_16135 PF16658 Class II release factor RF3, C-terminal domain PF555_16135 PF03144 Elongation factor Tu domain 2 PF555_16135 PF00009 Elongation factor Tu GTP binding domain PF555_16160 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain PF555_16160 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain PF555_16165 PF10369 Small subunit of acetolactate synthase PF555_16170 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain PF555_16170 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain PF555_16170 PF00205 Thiamine pyrophosphate enzyme, central domain PF555_16180 PF08264 Anticodon-binding domain of tRNA PF555_16180 PF00133 tRNA synthetases class I (I, L, M and V) PF555_16180 PF13603 Leucyl-tRNA synthetase, Domain 2 PF555_16180 PF09334 tRNA synthetases class I (M) PF555_16195 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion PF555_16200 PF00005 ABC transporter PF555_16200 PF02687 FtsX-like permease family PF555_16200 PF12704 MacB-like periplasmic core domain PF555_16205 PF02321 Outer membrane efflux protein PF555_16220 PF00929 Exonuclease PF555_16225 PF03193 RsgA GTPase PF555_16235 PF00462 Glutaredoxin PF555_16240 PF02556 Preprotein translocase subunit SecB PF555_16250 PF01926 50S ribosome-binding GTPase PF555_16250 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal PF555_16255 PF13360 PQQ-like domain PF555_16265 PF03129 Anticodon binding domain PF555_16265 PF13393 Histidyl-tRNA synthetase PF555_16270 PF04551 GcpE protein PF555_16275 PF13464 Domain of unknown function (DUF4115) PF555_16285 PF04055 Radical SAM superfamily PF555_16290 PF00334 Nucleoside diphosphate kinase PF555_16295 PF04384 Iron-sulphur cluster assembly PF555_16300 PF01569 PAP2 superfamily PF555_16305 PF13439 Glycosyltransferase Family 4 PF555_16305 PF00534 Glycosyl transferases group 1 PF555_16310 PF11818 C-terminal domain of tail specific protease (DUF3340) PF555_16310 PF00595 PDZ domain PF555_16310 PF03572 Peptidase family S41 PF555_16310 PF17804 Tail specific protease N-terminal domain PF555_16315 PF00933 Glycosyl hydrolase family 3 N terminal domain PF555_16325 PF00561 alpha/beta hydrolase fold PF555_16330 PF00171 Aldehyde dehydrogenase family PF555_16335 PF00171 Aldehyde dehydrogenase family PF555_16340 PF01202 Shikimate kinase PF555_16345 PF02447 GntP family permease PF555_16350 PF01081 KDPG and KHG aldolase PF555_16355 PF00920 Dehydratase family PF555_16360 PF00871 Acetokinase family PF555_16365 PF07085 DRTGG domain PF555_16365 PF01515 Phosphate acetyl/butaryl transferase PF555_16370 PF05681 Fumarate hydratase (Fumerase) PF555_16370 PF05683 Fumarase C-terminus PF555_16385 PF07724 AAA domain (Cdc48 subfamily) PF555_16385 PF10431 C-terminal, D2-small domain, of ClpB protein PF555_16385 PF06689 ClpX C4-type zinc finger PF555_16390 PF00574 Clp protease PF555_16395 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase PF555_16395 PF05698 Bacterial trigger factor protein (TF) C-terminus PF555_16395 PF05697 Bacterial trigger factor protein (TF) PF555_16400 PF07715 TonB-dependent Receptor Plug Domain PF555_16400 PF00593 TonB dependent receptor PF555_16405 PF13640 2OG-Fe(II) oxygenase superfamily PF555_16405 PF18331 PKHD-type hydroxylase C-terminal domain PF555_16410 PF08502 LeuA allosteric (dimerisation) domain PF555_16410 PF00682 HMGL-like PF555_16415 PF00561 alpha/beta hydrolase fold PF555_16420 PF00561 alpha/beta hydrolase fold PF555_16420 PF07021 Methionine biosynthesis protein MetW PF555_16430 PF01725 Ham1 family PF555_16440 PF02416 mttA/Hcf106 family PF555_16445 PF02416 mttA/Hcf106 family PF555_16450 PF00902 Sec-independent protein translocase protein (TatC) PF555_16470 PF01790 Prolipoprotein diacylglyceryl transferase PF555_16485 PF00303 Thymidylate synthase PF555_16490 PF00186 Dihydrofolate reductase PF555_16500 PF01625 Peptide methionine sulfoxide reductase PF555_16510 PF01618 MotA/TolQ/ExbB proton channel family PF555_16520 PF00551 Formyl transferase PF555_16520 PF01842 ACT domain PF555_16530 PF00171 Aldehyde dehydrogenase family PF555_16535 PF00830 Ribosomal L28 family PF555_16540 PF00471 Ribosomal protein L33 PF555_16545 PF00999 Sodium/hydrogen exchanger family PF555_16545 PF02254 TrkA-N domain PF555_16565 PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) PF555_16570 PF00580 UvrD/REP helicase N-terminal domain PF555_16570 PF13361 UvrD-like helicase C-terminal domain PF555_16585 PF08272 Topoisomerase I zinc-ribbon-like PF555_16585 PF01131 DNA topoisomerase PF555_16585 PF01751 Toprim domain PF555_16585 PF01396 Topoisomerase DNA binding C4 zinc finger PF555_16595 PF01638 HxlR-like helix-turn-helix PF555_16600 PF00107 Zinc-binding dehydrogenase PF555_16600 PF08240 Alcohol dehydrogenase GroES-like domain PF555_16605 PF04102 SlyX PF555_16610 PF12848 ABC transporter PF555_16610 PF16326 ABC transporter C-terminal domain PF555_16610 PF00005 ABC transporter PF555_16615 PF01810 LysE type translocator PF555_16620 PF03279 Bacterial lipid A biosynthesis acyltransferase PF555_16630 PF00375 Sodium:dicarboxylate symporter family PF555_16640 PF01118 Semialdehyde dehydrogenase, NAD binding domain PF555_16640 PF02774 Semialdehyde dehydrogenase, dimerisation domain PF555_16660 PF01416 tRNA pseudouridine synthase PF555_16670 PF01176 Translation initiation factor 1A / IF-1 PF555_16685 PF00180 Isocitrate/isopropylmalate dehydrogenase PF555_16695 PF00694 Aconitase C-terminal domain PF555_16700 PF00330 Aconitase family (aconitate hydratase) PF555_16710 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family PF555_16710 PF03466 LysR substrate binding domain PF555_16730 PF00293 NUDIX domain PF555_16735 PF00391 PEP-utilising enzyme, mobile domain PF555_16735 PF05524 PEP-utilising enzyme, N-terminal PF555_16735 PF01590 GAF domain PF555_16735 PF02896 PEP-utilising enzyme, TIM barrel domain PF555_16740 PF00141 Peroxidase PF555_16745 PF12706 Beta-lactamase superfamily domain PF555_16750 PF03466 LysR substrate binding domain PF555_16750 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family PF555_16760 PF02798 Glutathione S-transferase, N-terminal domain PF555_16765 PF13280 WYL domain PF555_16765 PF08279 HTH domain PF555_16770 PF13419 Haloacid dehalogenase-like hydrolase PF555_16775 PF01479 S4 domain PF555_16775 PF00849 RNA pseudouridylate synthase PF555_16780 PF00575 S1 RNA binding domain PF555_16780 PF10150 Ribonuclease E/G family PF555_16780 PF12111 Polyribonucleotide phosphorylase C terminal PF555_16785 PF00501 AMP-binding enzyme PF555_16785 PF13193 AMP-binding enzyme C-terminal domain PF555_16800 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family PF555_16800 PF03466 LysR substrate binding domain PF555_16810 PF06969 HemN C-terminal domain PF555_16810 PF04055 Radical SAM superfamily PF555_16820 PF01554 MatE PF555_16825 PF02770 Acyl-CoA dehydrogenase, middle domain PF555_16825 PF08028 Acyl-CoA dehydrogenase, C-terminal domain PF555_16825 PF02771 Acyl-CoA dehydrogenase, N-terminal domain PF555_16830 PF08028 Acyl-CoA dehydrogenase, C-terminal domain PF555_16830 PF02771 Acyl-CoA dehydrogenase, N-terminal domain PF555_16835 PF03109 ABC1 family PF555_16855 PF13005 zinc-finger binding domain of transposase IS66 PF555_16855 PF13007 Transposase C of IS166 homeodomain PF555_16855 PF13817 IS66 C-terminal element PF555_16855 PF03050 Transposase IS66 family PF555_16865 PF13817 IS66 C-terminal element PF555_16865 PF13007 Transposase C of IS166 homeodomain PF555_16865 PF03050 Transposase IS66 family PF555_16865 PF13005 zinc-finger binding domain of transposase IS66 PF555_16890 PF02537 CrcB-like protein, Camphor Resistance (CrcB) PF555_16900 PF13247 4Fe-4S dicluster domain PF555_16900 PF07992 Pyridine nucleotide-disulphide oxidoreductase PF555_16900 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster PF555_16910 PF03884 DNA gyrase inhibitor YacG PF555_16915 PF00753 Metallo-beta-lactamase superfamily PF555_16920 PF00762 Ferrochelatase PF555_16930 PF01177 Asp/Glu/Hydantoin racemase PF555_16950 PF01206 Sulfurtransferase TusA PF555_16955 PF00571 CBS domain PF555_16955 PF03471 Transporter associated domain PF555_16960 PF00795 Carbon-nitrogen hydrolase PF555_16965 PF01588 Putative tRNA binding domain PF555_16975 PF08334 Type II secretion system (T2SS), protein G PF555_16975 PF07963 Prokaryotic N-terminal methylation motif PF555_16980 PF00482 Type II secretion system (T2SS), protein F PF555_16985 PF18319 PriA DNA helicase Cys-rich region (CRR) domain PF555_16985 PF00270 DEAD/DEAH box helicase PF555_16985 PF00271 Helicase conserved C-terminal domain PF555_16985 PF17764 3′ DNA-binding domain (3′BD) PF555_16985 PF18074 Primosomal protein N C-terminal domain PF555_16990 PF02254 TrkA-N domain PF555_16990 PF00999 Sodium/hydrogen exchanger family PF555_16995 PF01430 Hsp33 protein PF555_17005 PF01556 DnaJ C terminal domain PF555_17005 PF00226 DnaJ domain PF555_17015 PF01544 CorA-like Mg2+ transporter protein PF555_17020 PF00013 KH domain PF555_17020 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain PF555_17020 PF01138 3' exoribonuclease family, domain 1 PF555_17020 PF03725 3' exoribonuclease family, domain 2 PF555_17020 PF00575 S1 RNA binding domain PF555_17025 PF00312 Ribosomal protein S15 PF555_17030 PF00144 Beta-lactamase PF555_17035 PF13538 UvrD-like helicase C-terminal domain PF555_17040 PF12705 PD-(D/E)XK nuclease superfamily PF555_17040 PF13361 UvrD-like helicase C-terminal domain PF555_17040 PF00580 UvrD/REP helicase N-terminal domain PF555_17045 PF17946 RecC C-terminal domain PF555_17055 PF03976 Polyphosphate kinase 2 (PPK2) PF555_17065 PF01209 ubiE/COQ5 methyltransferase family PF555_17075 PF03109 ABC1 family PF555_17080 PF01494 FAD binding domain PF555_17085 PF01502 Phosphoribosyl-AMP cyclohydrolase PF555_17100 PF13244 Domain of unknown function (DUF4040) PF555_17100 PF04039 Domain related to MnhB subunit of Na+/H+ antiporter PF555_17100 PF00361 Proton-conducting membrane transporter PF555_17100 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus PF555_17105 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L PF555_17110 PF00361 Proton-conducting membrane transporter PF555_17115 PF01899 Na+/H+ ion antiporter subunit PF555_17120 PF04066 Multiple resistance and pH regulation protein F (MrpF / PhaF) PF555_17125 PF03334 Na+/H+ antiporter subunit PF555_17130 PF02033 Ribosome-binding factor A PF555_17135 PF08364 Bacterial translation initiation factor IF-2 associated region PF555_17135 PF11987 Translation-initiation factor 2 PF555_17135 PF04760 Translation initiation factor IF-2, N-terminal region PF555_17135 PF00009 Elongation factor Tu GTP binding domain PF555_17140 PF08529 NusA N-terminal domain PF555_17140 PF00575 S1 RNA binding domain PF555_17140 PF13184 NusA-like KH domain PF555_17145 PF02576 RimP N-terminal domain PF555_17145 PF17384 RimP C-terminal SH3 domain PF555_17165 PF03840 Preprotein translocase SecG subunit PF555_17170 PF00121 Triosephosphate isomerase PF555_17175 PF00437 Type II/IV secretion system protein PF555_17175 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain PF555_17180 PF00482 Type II secretion system (T2SS), protein F PF555_17185 PF06750 Bacterial Peptidase A24 N-terminal domain PF555_17185 PF01478 Type IV leader peptidase family PF555_17190 PF01121 Dephospho-CoA kinase PF555_17200 PF00588 SpoU rRNA Methylase family PF555_17200 PF08032 RNA 2'-O ribose methyltransferase substrate binding PF555_17205 PF06865 Pyrimidine/purine nucleoside phosphorylase PF555_17215 PF02463 RecF/RecN/SMC N terminal domain PF555_17220 PF02622 Uncharacterized ACR, COG1678 PF555_17225 PF03652 Holliday junction resolvase PF555_17230 PF13533 Biotin-lipoyl like PF555_17255 PF02805 Metal binding domain of Ada PF555_17255 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain PF555_17255 PF12833 Helix-turn-helix domain PF555_17255 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain PF555_17260 PF01066 CDP-alcohol phosphatidyltransferase PF555_17270 PF08459 UvrC Helix-hairpin-helix N-terminal PF555_17270 PF01541 GIY-YIG catalytic domain PF555_17270 PF02151 UvrB/uvrC motif PF555_17285 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain PF555_17285 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain PF555_17285 PF00378 Enoyl-CoA hydratase/isomerase PF555_17290 PF02803 Thiolase, C-terminal domain PF555_17290 PF00108 Thiolase, N-terminal domain PF555_17310 PF13411 MerR HTH family regulatory protein PF555_17320 PF01323 DSBA-like thioredoxin domain PF555_17335 PF00183 Hsp90 protein PF555_17335 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PF555_17350 PF03553 Na+/H+ antiporter family PF555_17350 PF13726 Na+-H+ antiporter family PF555_17375 PF00623 RNA polymerase Rpb1, domain 2 PF555_17375 PF04998 RNA polymerase Rpb1, domain 5 PF555_17375 PF05000 RNA polymerase Rpb1, domain 4 PF555_17375 PF04983 RNA polymerase Rpb1, domain 3 PF555_17375 PF04997 RNA polymerase Rpb1, domain 1 PF555_17380 PF04565 RNA polymerase Rpb2, domain 3 PF555_17380 PF04560 RNA polymerase Rpb2, domain 7 PF555_17380 PF00562 RNA polymerase Rpb2, domain 6 PF555_17380 PF04561 RNA polymerase Rpb2, domain 2 PF555_17380 PF10385 RNA polymerase beta subunit external 1 domain PF555_17380 PF04563 RNA polymerase beta subunit PF555_17385 PF00542 Ribosomal protein L7/L12 C-terminal domain PF555_17385 PF16320 Ribosomal protein L7/L12 dimerisation domain PF555_17390 PF00466 Ribosomal protein L10 PF555_17395 PF00687 Ribosomal protein L1p/L10e family PF555_17400 PF00298 Ribosomal protein L11, RNA binding domain PF555_17400 PF03946 Ribosomal protein L11, N-terminal domain PF555_17405 PF00467 KOW motif PF555_17405 PF02357 Transcription termination factor nusG PF555_17410 PF00584 SecE/Sec61-gamma subunits of protein translocation complex PF555_17420 PF03143 Elongation factor Tu C-terminal domain PF555_17420 PF03144 Elongation factor Tu domain 2 PF555_17420 PF00009 Elongation factor Tu GTP binding domain PF555_17445 PF00425 chorismate binding enzyme PF555_17445 PF04715 Anthranilate synthase component I, N terminal region PF555_17450 PF13419 Haloacid dehalogenase-like hydrolase PF555_17455 PF12401 Protein of unknown function (DUF2662) PF555_17455 PF00498 FHA domain PF555_17460 PF00263 Bacterial type II and III secretion system protein PF555_17460 PF03958 Bacterial type II/III secretion system short domain PF555_17475 PF00816 H-NS histone family PF555_17500 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain PF555_17500 PF03900 Porphobilinogen deaminase, C-terminal domain PF555_17505 PF04397 LytTr DNA-binding domain PF555_17505 PF00072 Response regulator receiver domain PF555_17510 PF07694 5TMR of 5TMR-LYT PF555_17510 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PF555_17510 PF06580 Histidine kinase PF555_17515 PF14698 Argininosuccinate lyase C-terminal PF555_17515 PF00206 Lyase PF555_17520 PF04362 Bacterial Fe(2+) trafficking PF555_17525 PF01895 PhoU domain PF555_17530 PF02321 Outer membrane efflux protein PF555_17535 PF00892 EamA-like transporter family PF555_17550 PF01964 Radical SAM ThiC family PF555_17550 PF13667 ThiC-associated domain PF555_17555 PF00293 NUDIX domain PF555_17560 PF00149 Calcineurin-like phosphoesterase PF555_17565 PF01258 Prokaryotic dksA/traR C4-type zinc finger PF555_17570 PF00749 tRNA synthetases class I (E and Q), catalytic domain PF555_17575 PF01098 Cell cycle protein PF555_17580 PF02875 Mur ligase family, glutamate ligase domain PF555_17580 PF08245 Mur ligase middle domain PF555_17590 PF07670 Nucleoside recognition PF555_17590 PF07664 Ferrous iron transport protein B C terminus PF555_17590 PF02421 Ferrous iron transport protein B PF555_17600 PF02899 Phage integrase, N-terminal SAM-like domain PF555_17600 PF00589 Phage integrase family PF555_17605 PF10411 Disulfide bond isomerase protein N-terminus PF555_17605 PF13098 Thioredoxin-like domain PF555_17610 PF01842 ACT domain PF555_17610 PF00742 Homoserine dehydrogenase PF555_17610 PF03447 Homoserine dehydrogenase, NAD binding domain PF555_17615 PF00291 Pyridoxal-phosphate dependent enzyme PF555_17620 PF00768 D-alanyl-D-alanine carboxypeptidase PF555_17625 PF00196 Bacterial regulatory proteins, luxR family PF555_17625 PF00072 Response regulator receiver domain PF555_17630 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PF555_17630 PF00512 His Kinase A (phospho-acceptor) domain PF555_17635 PF02954 Bacterial regulatory protein, Fis family PF555_17635 PF00072 Response regulator receiver domain PF555_17635 PF00158 Sigma-54 interaction domain PF555_17640 PF03572 Peptidase family S41 PF555_17640 PF00595 PDZ domain PF555_17645 PF06415 BPG-independent PGAM N-terminus (iPGM_N) PF555_17645 PF01676 Metalloenzyme superfamily PF555_17650 PF03739 Lipopolysaccharide export system permease LptF/LptG PF555_17660 PF02789 Cytosol aminopeptidase family, N-terminal domain PF555_17660 PF00883 Cytosol aminopeptidase family, catalytic domain PF555_17680 PF00677 Lumazine binding domain PF555_17690 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region PF555_17690 PF01872 RibD C-terminal domain PF555_17695 PF03477 ATP cone domain PF555_17700 PF00909 Ammonium Transporter Family PF555_17705 PF00543 Nitrogen regulatory protein P-II PF555_17755 PF13411 MerR HTH family regulatory protein PF555_17770 PF07670 Nucleoside recognition PF555_17770 PF02421 Ferrous iron transport protein B PF555_17770 PF07664 Ferrous iron transport protein B C terminus PF555_17795 PF07732 Multicopper oxidase PF555_17795 PF07731 Multicopper oxidase PF555_17795 PF00394 Multicopper oxidase PF555_17805 PF00486 Transcriptional regulatory protein, C terminal PF555_17805 PF00072 Response regulator receiver domain PF555_17810 PF00512 His Kinase A (phospho-acceptor) domain PF555_17810 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PF555_17810 PF00672 HAMP domain PF555_17845 PF13434 L-lysine 6-monooxygenase (NADPH-requiring) PF555_17850 PF07715 TonB-dependent Receptor Plug Domain PF555_17850 PF00593 TonB dependent receptor PF555_17855 PF01497 Periplasmic binding protein PF555_17860 PF00005 ABC transporter PF555_17865 PF01032 FecCD transport family PF555_17870 PF01032 FecCD transport family PF555_17875 PF00501 AMP-binding enzyme PF555_17875 PF13193 AMP-binding enzyme C-terminal domain PF555_17875 PF00668 Condensation domain PF555_17875 PF00550 Phosphopantetheine attachment site PF555_17875 PF00975 Thioesterase domain PF555_17880 PF00501 AMP-binding enzyme PF555_17880 PF13193 AMP-binding enzyme C-terminal domain PF555_17880 PF00668 Condensation domain PF555_17880 PF00550 Phosphopantetheine attachment site PF555_17890 PF08348 YheO-like PAS domain PF555_17890 PF13309 HTH domain PF555_17895 PF00291 Pyridoxal-phosphate dependent enzyme PF555_17900 PF17954 Quercetinase C-terminal cupin domain PF555_17900 PF02678 Pirin PF555_17920 PF00440 Bacterial regulatory proteins, tetR family PF555_17930 PF03050 Transposase IS66 family PF555_17930 PF13817 IS66 C-terminal element PF555_17930 PF13007 Transposase C of IS166 homeodomain PF555_17930 PF13005 zinc-finger binding domain of transposase IS66 PF555_17955 PF00665 Integrase core domain PF555_17970 PF00392 Bacterial regulatory proteins, gntR family PF555_17970 PF00155 Aminotransferase class I and II PF555_17975 PF00596 Class II Aldolase and Adducin N-terminal domain PF555_17980 PF00701 Dihydrodipicolinate synthetase family PF555_17995 PF03573 outer membrane porin, OprD family PF555_18000 PF00719 Inorganic pyrophosphatase PF555_18015 PF00501 AMP-binding enzyme PF555_18015 PF13193 AMP-binding enzyme C-terminal domain PF555_18020 PF00521 DNA gyrase/topoisomerase IV, subunit A PF555_18020 PF03989 DNA gyrase C-terminal domain, beta-propeller PF555_18025 PF07690 Major Facilitator Superfamily PF555_18030 PF03458 UPF0126 domain PF555_18035 PF02810 SEC-C motif PF555_18040 PF03471 Transporter associated domain PF555_18040 PF03741 Integral membrane protein TerC family PF555_18045 PF03641 Possible lysine decarboxylase PF555_18050 PF07690 Major Facilitator Superfamily PF555_18060 PF11799 impB/mucB/samB family C-terminal domain PF555_18060 PF00817 impB/mucB/samB family PF555_18060 PF11798 IMS family HHH motif PF555_18080 PF04055 Radical SAM superfamily PF555_18080 PF08497 Radical SAM N-terminal PF555_18080 PF11842 Domain of unknown function (DUF3362) PF555_18100 PF03358 NADPH-dependent FMN reductase PF555_18110 PF00291 Pyridoxal-phosphate dependent enzyme PF555_18170 PF01327 Polypeptide deformylase PF555_18180 PF17782 DprA winged helix domain PF555_18180 PF02481 DNA recombination-mediator protein A PF555_18185 PF01300 Telomere recombination PF555_18190 PF00892 EamA-like transporter family PF555_18195 PF00440 Bacterial regulatory proteins, tetR family PF555_18200 PF07690 Major Facilitator Superfamily PF555_18210 PF00255 Glutathione peroxidase PF555_18220 PF11008 Protein of unknown function (DUF2846) PF555_18225 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain PF555_18230 PF02874 ATP synthase alpha/beta family, beta-barrel domain PF555_18230 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain PF555_18235 PF00231 ATP synthase PF555_18240 PF02874 ATP synthase alpha/beta family, beta-barrel domain PF555_18240 PF00306 ATP synthase alpha/beta chain, C terminal domain PF555_18240 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain PF555_18245 PF00213 ATP synthase delta (OSCP) subunit PF555_18250 PF00430 ATP synthase B/B' CF(0) PF555_18255 PF00137 ATP synthase subunit C PF555_18260 PF00119 ATP synthase A chain PF555_18280 PF00005 ABC transporter PF555_18285 PF00950 ABC 3 transport family PF555_18290 PF01810 LysE type translocator PF555_18295 PF04261 Dyp-type peroxidase family PF555_18305 PF00390 Malic enzyme, N-terminal domain PF555_18305 PF03949 Malic enzyme, NAD binding domain PF555_18310 PF03485 Arginyl tRNA synthetase N terminal domain PF555_18310 PF05746 DALR anticodon binding domain PF555_18310 PF00750 tRNA synthetases class I (R) PF555_18330 PF05726 Pirin C-terminal cupin domain PF555_18330 PF02678 Pirin PF555_18340 PF03551 Transcriptional regulator PadR-like family PF555_18345 PF01909 Nucleotidyltransferase domain PF555_18345 PF13427 Domain of unknown function (DUF4111) PF555_18350 PF00117 Glutamine amidotransferase class-I PF555_18350 PF02540 NAD synthase PF555_18350 PF00958 GMP synthase C terminal domain PF555_18355 PF04286 Protein of unknown function (DUF445) PF555_18360 PF07681 DoxX PF555_18365 PF09335 SNARE associated Golgi protein PF555_18375 PF13610 DDE domain PF555_18380 PF10706 Aminoglycoside-2''-adenylyltransferase PF555_18385 PF01636 Phosphotransferase enzyme family PF555_18390 PF00005 ABC transporter PF555_18395 PF13610 DDE domain PF555_18410 PF00392 Bacterial regulatory proteins, gntR family PF555_18410 PF07702 UTRA domain PF555_18420 PF02492 CobW/HypB/UreG, nucleotide-binding domain PF555_18420 PF07683 Cobalamin synthesis protein cobW C-terminal domain PF555_18430 PF00324 Amino acid permease PF555_18440 PF02798 Glutathione S-transferase, N-terminal domain PF555_18440 PF14497 Glutathione S-transferase, C-terminal domain PF555_18445 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily PF555_18455 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily PF555_18460 PF04463 Protein of unknown function (DUF523) PF555_18470 PF01758 Sodium Bile acid symporter family PF555_18475 PF00857 Isochorismatase family PF555_18480 PF00701 Dihydrodipicolinate synthetase family PF555_18490 PF01259 SAICAR synthetase PF555_18500 PF01226 Formate/nitrite transporter PF555_18505 PF12002 MgsA AAA+ ATPase C terminal PF555_18505 PF00004 ATPase family associated with various cellular activities (AAA) PF555_18505 PF16193 AAA C-terminal domain PF555_18510 PF07995 Glucose / Sorbosone dehydrogenase PF555_18515 PF03692 Putative zinc- or iron-chelating domain PF555_18520 PF07043 Protein of unknown function (DUF1328) PF555_18535 PF00730 HhH-GPD superfamily base excision DNA repair protein PF555_18535 PF14815 NUDIX domain PF555_18535 PF10576 Iron-sulfur binding domain of endonuclease III PF555_18535 PF00633 Helix-hairpin-helix motif PF555_18550 PF03352 Methyladenine glycosylase PF555_18555 PF00107 Zinc-binding dehydrogenase PF555_18555 PF08240 Alcohol dehydrogenase GroES-like domain PF555_18560 PF00392 Bacterial regulatory proteins, gntR family PF555_18560 PF00155 Aminotransferase class I and II PF555_18575 PF03466 LysR substrate binding domain PF555_18575 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family PF555_18580 PF00248 Aldo/keto reductase family PF555_18585 PF07690 Major Facilitator Superfamily PF555_18595 PF05173 Dihydrodipicolinate reductase, C-terminus PF555_18595 PF01113 Dihydrodipicolinate reductase, N-terminus PF555_18605 PF00684 DnaJ central domain PF555_18605 PF01556 DnaJ C terminal domain PF555_18605 PF00226 DnaJ domain PF555_18620 PF13610 DDE domain PF555_18630 PF13406 Transglycosylase SLT domain PF555_18635 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain PF555_18635 PF02222 ATP-grasp domain PF555_18640 PF00731 AIR carboxylase PF555_18650 PF08245 Mur ligase middle domain PF555_18650 PF02875 Mur ligase family, glutamate ligase domain PF555_18650 PF01225 Mur ligase family, catalytic domain PF555_18660 PF01569 PAP2 superfamily PF555_18665 PF03741 Integral membrane protein TerC family PF555_18675 PF03738 Glutathionylspermidine synthase preATP-grasp PF555_18685 PF01979 Amidohydrolase family PF555_18690 PF00156 Phosphoribosyl transferase domain PF555_18700 PF13098 Thioredoxin-like domain PF555_18700 PF10411 Disulfide bond isomerase protein N-terminus PF555_18705 PF01545 Cation efflux family PF555_18705 PF16916 Dimerisation domain of Zinc Transporter PF555_18710 PF02583 Metal-sensitive transcriptional repressor PF555_18715 PF10396 GTP-binding protein TrmE N-terminus PF555_18715 PF12631 MnmE helical domain PF555_18715 PF01926 50S ribosome-binding GTPase PF555_18720 PF02096 60Kd inner membrane protein PF555_18720 PF14849 YidC periplasmic domain PF555_18725 PF01809 Putative membrane protein insertion efficiency factor PF555_18730 PF00825 Ribonuclease P PF555_18735 PF00468 Ribosomal protein L34 PF555_18795 PF10410 DnaB-helicase binding domain of primase PF555_18795 PF08275 DNA primase catalytic core, N-terminal domain PF555_18795 PF01807 CHC2 zinc finger PF555_18835 PF00625 Guanylate kinase PF555_18860 PF02899 Phage integrase, N-terminal SAM-like domain PF555_18860 PF00589 Phage integrase family PF555_18895 PF17657 Bacterial DNA polymerase III alpha subunit finger domain PF555_18895 PF02811 PHP domain PF555_18895 PF07733 Bacterial DNA polymerase III alpha NTPase domain PF555_18895 PF14579 Helix-hairpin-helix motif PF555_18915 PF00154 recA bacterial DNA recombination protein PF555_18960 PF13476 AAA domain PF555_18985 PF03477 ATP cone domain PF555_18985 PF02867 Ribonucleotide reductase, barrel domain PF555_18985 PF00317 Ribonucleotide reductase, all-alpha domain PF555_18990 PF00268 Ribonucleotide reductase, small chain PF555_19015 PF00692 dUTPase PF555_19100 PF00929 Exonuclease PF555_19230 PF02195 ParB-like nuclease domain PF555_19235 PF09383 NIL domain PF555_19235 PF00005 ABC transporter PF555_19340 PF00877 NlpC/P60 family