locus-tag class description NE421_00005 PF00308 Bacterial dnaA protein NE421_00005 PF08299 Bacterial dnaA protein helix-turn-helix NE421_00005 PF11638 DnaA N-terminal domain NE421_00010 PF00712 DNA polymerase III beta subunit, N-terminal domain NE421_00010 PF02767 DNA polymerase III beta subunit, central domain NE421_00010 PF02768 DNA polymerase III beta subunit, C-terminal domain NE421_00015 PF02463 RecF/RecN/SMC N terminal domain NE421_00020 PF01751 Toprim domain NE421_00020 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NE421_00020 PF18053 DNA gyrase B subunit insert domain NE421_00020 PF00986 DNA gyrase B subunit, carboxyl terminus NE421_00020 PF00204 DNA gyrase B NE421_00030 PF09335 SNARE associated Golgi protein NE421_00035 PF00005 ABC transporter NE421_00035 PF12848 ABC transporter NE421_00055 PF01521 Iron-sulphur cluster biosynthesis NE421_00060 PF00561 alpha/beta hydrolase fold NE421_00065 PF03702 Anhydro-N-acetylmuramic acid kinase NE421_00070 PF00579 tRNA synthetases class I (W and Y) NE421_00110 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase NE421_00115 PF01252 Signal peptidase (SPase) II NE421_00120 PF08264 Anticodon-binding domain of tRNA NE421_00120 PF00133 tRNA synthetases class I (I, L, M and V) NE421_00120 PF06827 Zinc finger found in FPG and IleRS NE421_00125 PF06574 FAD synthetase NE421_00125 PF01687 Riboflavin kinase NE421_00135 PF01048 Phosphorylase superfamily NE421_00140 PF00440 Bacterial regulatory proteins, tetR family NE421_00140 PF08362 YcdC-like protein, C-terminal region NE421_00145 PF00005 ABC transporter NE421_00150 PF00528 Binding-protein-dependent transport system inner membrane component NE421_00155 PF00296 Luciferase-like monooxygenase NE421_00160 PF09084 NMT1/THI5 like NE421_00165 PF09084 NMT1/THI5 like NE421_00170 PF00696 Amino acid kinase family NE421_00170 PF00583 Acetyltransferase (GNAT) family NE421_00185 PF00106 short chain dehydrogenase NE421_00190 PF13419 Haloacid dehalogenase-like hydrolase NE421_00200 PF01323 DSBA-like thioredoxin domain NE421_00205 PF00440 Bacterial regulatory proteins, tetR family NE421_00205 PF08360 QacR-like protein, C-terminal region NE421_00210 PF00440 Bacterial regulatory proteins, tetR family NE421_00215 PF00175 Oxidoreductase NAD-binding domain NE421_00220 PF00487 Fatty acid desaturase NE421_00225 PF01138 3' exoribonuclease family, domain 1 NE421_00225 PF03725 3' exoribonuclease family, domain 2 NE421_00230 PF05506 Domain of unknown function (DUF756) NE421_00230 PF04185 Phosphoesterase family NE421_00240 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain NE421_00240 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain NE421_00245 PF01510 N-acetylmuramoyl-L-alanine amidase NE421_00250 PF03023 Lipid II flippase MurJ NE421_00255 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase NE421_00255 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase NE421_00260 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase NE421_00260 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase NE421_00265 PF02706 Chain length determinant protein NE421_00265 PF13807 G-rich domain on putative tyrosine kinase NE421_00265 PF13614 AAA domain NE421_00270 PF01451 Low molecular weight phosphotyrosine protein phosphatase NE421_00275 PF10531 SLBB domain NE421_00275 PF18412 Outer-membrane lipoprotein Wza C-terminal domain NE421_00275 PF02563 Polysaccharide biosynthesis/export protein NE421_00280 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain NE421_00280 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain NE421_00280 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain NE421_00290 PF01501 Glycosyl transferase family 8 NE421_00290 PF00535 Glycosyl transferase family 2 NE421_00300 PF00535 Glycosyl transferase family 2 NE421_00305 PF00534 Glycosyl transferases group 1 NE421_00310 PF00535 Glycosyl transferase family 2 NE421_00315 PF02397 Bacterial sugar transferase NE421_00320 PF00483 Nucleotidyl transferase NE421_00325 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain NE421_00325 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain NE421_00325 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain NE421_00330 PF00342 Phosphoglucose isomerase NE421_00335 PF16363 GDP-mannose 4,6 dehydratase NE421_00345 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain NE421_00345 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III NE421_00345 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II NE421_00345 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I NE421_00350 PF02652 L-lactate permease NE421_00355 PF00392 Bacterial regulatory proteins, gntR family NE421_00355 PF07729 FCD domain NE421_00360 PF01070 FMN-dependent dehydrogenase NE421_00365 PF01565 FAD binding domain NE421_00365 PF09330 D-lactate dehydrogenase, membrane binding NE421_00370 PF00155 Aminotransferase class I and II NE421_00380 PF07729 FCD domain NE421_00380 PF00392 Bacterial regulatory proteins, gntR family NE421_00390 PF00285 Citrate synthase, C-terminal domain NE421_00395 PF00694 Aconitase C-terminal domain NE421_00395 PF00330 Aconitase family (aconitate hydratase) NE421_00425 PF10106 Uncharacterized protein conserved in bacteria (DUF2345) NE421_00425 PF13296 Putative type VI secretion system Rhs element Vgr NE421_00425 PF04717 Type VI secretion system, phage-baseplate injector NE421_00500 PF00849 RNA pseudouridylate synthase NE421_00515 PF07715 TonB-dependent Receptor Plug Domain NE421_00515 PF00593 TonB dependent receptor NE421_00525 PF01037 Lrp/AsnC ligand binding domain NE421_00530 PF01266 FAD dependent oxidoreductase NE421_00535 PF01168 Alanine racemase, N-terminal domain NE421_00535 PF00842 Alanine racemase, C-terminal domain NE421_00540 PF01042 Endoribonuclease L-PSP NE421_00545 PF00324 Amino acid permease NE421_00550 PF00324 Amino acid permease NE421_00560 PF00171 Aldehyde dehydrogenase family NE421_00565 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase NE421_00565 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase NE421_00570 PF13193 AMP-binding enzyme C-terminal domain NE421_00570 PF00501 AMP-binding enzyme NE421_00575 PF02771 Acyl-CoA dehydrogenase, N-terminal domain NE421_00575 PF02770 Acyl-CoA dehydrogenase, middle domain NE421_00575 PF00441 Acyl-CoA dehydrogenase, C-terminal domain NE421_00580 PF00378 Enoyl-CoA hydratase/isomerase NE421_00585 PF00378 Enoyl-CoA hydratase/isomerase NE421_00590 PF00083 Sugar (and other) transporter NE421_00590 PF07690 Major Facilitator Superfamily NE421_00595 PF00765 Autoinducer synthase NE421_00605 PF03472 Autoinducer binding domain NE421_00605 PF00196 Bacterial regulatory proteins, luxR family NE421_00610 PF00501 AMP-binding enzyme NE421_00615 PF00441 Acyl-CoA dehydrogenase, C-terminal domain NE421_00615 PF02770 Acyl-CoA dehydrogenase, middle domain NE421_00615 PF02771 Acyl-CoA dehydrogenase, N-terminal domain NE421_00620 PF16197 Ketoacyl-synthetase C-terminal extension NE421_00620 PF00109 Beta-ketoacyl synthase, N-terminal domain NE421_00620 PF02801 Beta-ketoacyl synthase, C-terminal domain NE421_00620 PF08242 Methyltransferase domain NE421_00620 PF00550 Phosphopantetheine attachment site NE421_00620 PF14765 Polyketide synthase dehydratase NE421_00620 PF00975 Thioesterase domain NE421_00625 PF13193 AMP-binding enzyme C-terminal domain NE421_00625 PF00668 Condensation domain NE421_00625 PF00501 AMP-binding enzyme NE421_00625 PF00550 Phosphopantetheine attachment site NE421_00625 PF00975 Thioesterase domain NE421_00640 PF16363 GDP-mannose 4,6 dehydratase NE421_00645 PF01648 4'-phosphopantetheinyl transferase superfamily NE421_00660 PF01722 BolA-like protein NE421_00670 PF13614 AAA domain NE421_00685 PF09335 SNARE associated Golgi protein NE421_00690 PF07681 DoxX NE421_00695 PF04286 Protein of unknown function (DUF445) NE421_00700 PF02540 NAD synthase NE421_00700 PF00958 GMP synthase C terminal domain NE421_00700 PF00117 Glutamine amidotransferase class-I NE421_00705 PF01909 Nucleotidyltransferase domain NE421_00705 PF13427 Domain of unknown function (DUF4111) NE421_00710 PF03551 Transcriptional regulator PadR-like family NE421_00720 PF02678 Pirin NE421_00720 PF05726 Pirin C-terminal cupin domain NE421_00740 PF03485 Arginyl tRNA synthetase N terminal domain NE421_00740 PF00750 tRNA synthetases class I (R) NE421_00740 PF05746 DALR anticodon binding domain NE421_00745 PF03949 Malic enzyme, NAD binding domain NE421_00745 PF00390 Malic enzyme, N-terminal domain NE421_00750 PF04261 Dyp-type peroxidase family NE421_00755 PF01810 LysE type translocator NE421_00760 PF00950 ABC 3 transport family NE421_00765 PF00005 ABC transporter NE421_00785 PF00119 ATP synthase A chain NE421_00790 PF00137 ATP synthase subunit C NE421_00795 PF00430 ATP synthase B/B' CF(0) NE421_00800 PF00213 ATP synthase delta (OSCP) subunit NE421_00805 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain NE421_00805 PF02874 ATP synthase alpha/beta family, beta-barrel domain NE421_00805 PF00306 ATP synthase alpha/beta chain, C terminal domain NE421_00810 PF00231 ATP synthase NE421_00815 PF02874 ATP synthase alpha/beta family, beta-barrel domain NE421_00815 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain NE421_00820 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain NE421_00830 PF00255 Glutathione peroxidase NE421_00840 PF07690 Major Facilitator Superfamily NE421_00845 PF00440 Bacterial regulatory proteins, tetR family NE421_00850 PF00892 EamA-like transporter family NE421_00855 PF01300 Telomere recombination NE421_00860 PF02481 DNA recombination-mediator protein A NE421_00860 PF17782 DprA winged helix domain NE421_00870 PF01327 Polypeptide deformylase NE421_00930 PF00291 Pyridoxal-phosphate dependent enzyme NE421_00940 PF03358 NADPH-dependent FMN reductase NE421_00960 PF11842 Domain of unknown function (DUF3362) NE421_00960 PF08497 Radical SAM N-terminal NE421_00960 PF04055 Radical SAM superfamily NE421_00980 PF11798 IMS family HHH motif NE421_00980 PF00817 impB/mucB/samB family NE421_00980 PF11799 impB/mucB/samB family C-terminal domain NE421_00990 PF07690 Major Facilitator Superfamily NE421_00995 PF03641 Possible lysine decarboxylase NE421_01000 PF03471 Transporter associated domain NE421_01000 PF03741 Integral membrane protein TerC family NE421_01005 PF02810 SEC-C motif NE421_01010 PF03458 UPF0126 domain NE421_01015 PF07690 Major Facilitator Superfamily NE421_01020 PF03989 DNA gyrase C-terminal domain, beta-propeller NE421_01020 PF00521 DNA gyrase/topoisomerase IV, subunit A NE421_01025 PF00501 AMP-binding enzyme NE421_01025 PF13193 AMP-binding enzyme C-terminal domain NE421_01040 PF00719 Inorganic pyrophosphatase NE421_01045 PF03573 outer membrane porin, OprD family NE421_01060 PF00701 Dihydrodipicolinate synthetase family NE421_01075 PF01078 Magnesium chelatase, subunit ChlI NE421_01075 PF13335 Magnesium chelatase, subunit ChlI C-terminal NE421_01085 PF00543 Nitrogen regulatory protein P-II NE421_01090 PF00909 Ammonium Transporter Family NE421_01095 PF03477 ATP cone domain NE421_01100 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region NE421_01100 PF01872 RibD C-terminal domain NE421_01110 PF00677 Lumazine binding domain NE421_01130 PF00883 Cytosol aminopeptidase family, catalytic domain NE421_01130 PF02789 Cytosol aminopeptidase family, N-terminal domain NE421_01140 PF03739 Lipopolysaccharide export system permease LptF/LptG NE421_01145 PF06415 BPG-independent PGAM N-terminus (iPGM_N) NE421_01145 PF01676 Metalloenzyme superfamily NE421_01150 PF00595 PDZ domain NE421_01150 PF03572 Peptidase family S41 NE421_01155 PF00158 Sigma-54 interaction domain NE421_01155 PF02954 Bacterial regulatory protein, Fis family NE421_01155 PF00072 Response regulator receiver domain NE421_01160 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NE421_01160 PF00512 His Kinase A (phospho-acceptor) domain NE421_01165 PF00196 Bacterial regulatory proteins, luxR family NE421_01165 PF00072 Response regulator receiver domain NE421_01170 PF00768 D-alanyl-D-alanine carboxypeptidase NE421_01175 PF00291 Pyridoxal-phosphate dependent enzyme NE421_01180 PF01842 ACT domain NE421_01180 PF00742 Homoserine dehydrogenase NE421_01180 PF03447 Homoserine dehydrogenase, NAD binding domain NE421_01185 PF10411 Disulfide bond isomerase protein N-terminus NE421_01185 PF13098 Thioredoxin-like domain NE421_01190 PF00589 Phage integrase family NE421_01190 PF02899 Phage integrase, N-terminal SAM-like domain NE421_01200 PF07670 Nucleoside recognition NE421_01200 PF02421 Ferrous iron transport protein B NE421_01200 PF07664 Ferrous iron transport protein B C terminus NE421_01210 PF02875 Mur ligase family, glutamate ligase domain NE421_01210 PF08245 Mur ligase middle domain NE421_01215 PF01098 Cell cycle protein NE421_01220 PF00749 tRNA synthetases class I (E and Q), catalytic domain NE421_01225 PF01258 Prokaryotic dksA/traR C4-type zinc finger NE421_01230 PF00149 Calcineurin-like phosphoesterase NE421_01235 PF00293 NUDIX domain NE421_01240 PF13667 ThiC-associated domain NE421_01240 PF01964 Radical SAM ThiC family NE421_01255 PF00892 EamA-like transporter family NE421_01260 PF02321 Outer membrane efflux protein NE421_01265 PF01895 PhoU domain NE421_01270 PF04362 Bacterial Fe(2+) trafficking NE421_01275 PF14698 Argininosuccinate lyase C-terminal NE421_01275 PF00206 Lyase NE421_01280 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NE421_01280 PF07694 5TMR of 5TMR-LYT NE421_01280 PF06580 Histidine kinase NE421_01285 PF04397 LytTr DNA-binding domain NE421_01285 PF00072 Response regulator receiver domain NE421_01290 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain NE421_01290 PF03900 Porphobilinogen deaminase, C-terminal domain NE421_01315 PF00816 H-NS histone family NE421_01330 PF00263 Bacterial type II and III secretion system protein NE421_01330 PF03958 Bacterial type II/III secretion system short domain NE421_01335 PF12401 Protein of unknown function (DUF2662) NE421_01335 PF00498 FHA domain NE421_01340 PF13419 Haloacid dehalogenase-like hydrolase NE421_01345 PF00425 chorismate binding enzyme NE421_01345 PF04715 Anthranilate synthase component I, N terminal region NE421_01370 PF03143 Elongation factor Tu C-terminal domain NE421_01370 PF00009 Elongation factor Tu GTP binding domain NE421_01370 PF03144 Elongation factor Tu domain 2 NE421_01380 PF00584 SecE/Sec61-gamma subunits of protein translocation complex NE421_01385 PF00467 KOW motif NE421_01385 PF02357 Transcription termination factor nusG NE421_01390 PF00298 Ribosomal protein L11, RNA binding domain NE421_01390 PF03946 Ribosomal protein L11, N-terminal domain NE421_01395 PF00687 Ribosomal protein L1p/L10e family NE421_01400 PF00466 Ribosomal protein L10 NE421_01405 PF00542 Ribosomal protein L7/L12 C-terminal domain NE421_01405 PF16320 Ribosomal protein L7/L12 dimerisation domain NE421_01410 PF04563 RNA polymerase beta subunit NE421_01410 PF04560 RNA polymerase Rpb2, domain 7 NE421_01410 PF04561 RNA polymerase Rpb2, domain 2 NE421_01410 PF00562 RNA polymerase Rpb2, domain 6 NE421_01410 PF04565 RNA polymerase Rpb2, domain 3 NE421_01410 PF10385 RNA polymerase beta subunit external 1 domain NE421_01415 PF04997 RNA polymerase Rpb1, domain 1 NE421_01415 PF05000 RNA polymerase Rpb1, domain 4 NE421_01415 PF04998 RNA polymerase Rpb1, domain 5 NE421_01415 PF04983 RNA polymerase Rpb1, domain 3 NE421_01415 PF00623 RNA polymerase Rpb1, domain 2 NE421_01440 PF03553 Na+/H+ antiporter family NE421_01440 PF13726 Na+-H+ antiporter family NE421_01455 PF00183 Hsp90 protein NE421_01455 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NE421_01470 PF01323 DSBA-like thioredoxin domain NE421_01480 PF00376 MerR family regulatory protein NE421_01480 PF09278 MerR, DNA binding NE421_01500 PF02803 Thiolase, C-terminal domain NE421_01500 PF00108 Thiolase, N-terminal domain NE421_01505 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain NE421_01505 PF00378 Enoyl-CoA hydratase/isomerase NE421_01505 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain NE421_01530 PF01541 GIY-YIG catalytic domain NE421_01530 PF02151 UvrB/uvrC motif NE421_01530 PF08459 UvrC Helix-hairpin-helix N-terminal NE421_01540 PF01066 CDP-alcohol phosphatidyltransferase NE421_01545 PF02805 Metal binding domain of Ada NE421_01545 PF12833 Helix-turn-helix domain NE421_01545 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain NE421_01545 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain NE421_01570 PF13533 Biotin-lipoyl like NE421_01575 PF03652 Holliday junction resolvase NE421_01580 PF02622 Uncharacterized ACR, COG1678 NE421_01585 PF02463 RecF/RecN/SMC N terminal domain NE421_01595 PF06865 Pyrimidine/purine nucleoside phosphorylase NE421_01600 PF00588 SpoU rRNA Methylase family NE421_01600 PF08032 RNA 2'-O ribose methyltransferase substrate binding NE421_01610 PF01121 Dephospho-CoA kinase NE421_01615 PF01478 Type IV leader peptidase family NE421_01615 PF06750 Bacterial Peptidase A24 N-terminal domain NE421_01625 PF00482 Type II secretion system (T2SS), protein F NE421_01630 PF00437 Type II/IV secretion system protein NE421_01630 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain NE421_01635 PF00121 Triosephosphate isomerase NE421_01640 PF03840 Preprotein translocase SecG subunit NE421_01660 PF02576 RimP N-terminal domain NE421_01660 PF17384 RimP C-terminal SH3 domain NE421_01665 PF13184 NusA-like KH domain NE421_01665 PF08529 NusA N-terminal domain NE421_01665 PF00575 S1 RNA binding domain NE421_01670 PF04760 Translation initiation factor IF-2, N-terminal region NE421_01670 PF00009 Elongation factor Tu GTP binding domain NE421_01670 PF11987 Translation-initiation factor 2 NE421_01670 PF08364 Bacterial translation initiation factor IF-2 associated region NE421_01675 PF02033 Ribosome-binding factor A NE421_01680 PF03334 Na+/H+ antiporter subunit NE421_01685 PF04066 Multiple resistance and pH regulation protein F (MrpF / PhaF) NE421_01690 PF01899 Na+/H+ ion antiporter subunit NE421_01695 PF00361 Proton-conducting membrane transporter NE421_01700 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L NE421_01705 PF04039 Domain related to MnhB subunit of Na+/H+ antiporter NE421_01705 PF00361 Proton-conducting membrane transporter NE421_01705 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus NE421_01705 PF13244 Domain of unknown function (DUF4040) NE421_01720 PF01502 Phosphoribosyl-AMP cyclohydrolase NE421_01725 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily NE421_01730 PF01494 FAD binding domain NE421_01735 PF03109 ABC1 family NE421_01745 PF01209 ubiE/COQ5 methyltransferase family NE421_01755 PF03976 Polyphosphate kinase 2 (PPK2) NE421_01765 PF17946 RecC C-terminal domain NE421_01770 PF12705 PD-(D/E)XK nuclease superfamily NE421_01770 PF00580 UvrD/REP helicase N-terminal domain NE421_01770 PF13361 UvrD-like helicase C-terminal domain NE421_01775 PF13538 UvrD-like helicase C-terminal domain NE421_01780 PF00144 Beta-lactamase NE421_01785 PF00312 Ribosomal protein S15 NE421_01790 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain NE421_01790 PF00575 S1 RNA binding domain NE421_01790 PF00013 KH domain NE421_01790 PF01138 3' exoribonuclease family, domain 1 NE421_01790 PF03725 3' exoribonuclease family, domain 2 NE421_01795 PF01544 CorA-like Mg2+ transporter protein NE421_01805 PF00226 DnaJ domain NE421_01805 PF01556 DnaJ C terminal domain NE421_01815 PF01430 Hsp33 protein NE421_01820 PF02254 TrkA-N domain NE421_01820 PF00999 Sodium/hydrogen exchanger family NE421_01825 PF00270 DEAD/DEAH box helicase NE421_01825 PF00271 Helicase conserved C-terminal domain NE421_01825 PF17764 3′ DNA-binding domain (3′BD) NE421_01825 PF18074 Primosomal protein N C-terminal domain NE421_01825 PF18319 PriA DNA helicase Cys-rich region (CRR) domain NE421_01830 PF00482 Type II secretion system (T2SS), protein F NE421_01835 PF07963 Prokaryotic N-terminal methylation motif NE421_01835 PF08334 Type II secretion system (T2SS), protein G NE421_01845 PF01588 Putative tRNA binding domain NE421_01850 PF00795 Carbon-nitrogen hydrolase NE421_01855 PF00571 CBS domain NE421_01855 PF03471 Transporter associated domain NE421_01860 PF01206 Sulfurtransferase TusA NE421_01880 PF01177 Asp/Glu/Hydantoin racemase NE421_01890 PF00762 Ferrochelatase NE421_01895 PF00753 Metallo-beta-lactamase superfamily NE421_01900 PF03884 DNA gyrase inhibitor YacG NE421_01920 PF02537 CrcB-like protein, Camphor Resistance (CrcB) NE421_01935 PF01197 Ribosomal protein L31 NE421_01940 PF03109 ABC1 family NE421_01945 PF02771 Acyl-CoA dehydrogenase, N-terminal domain NE421_01945 PF08028 Acyl-CoA dehydrogenase, C-terminal domain NE421_01950 PF08028 Acyl-CoA dehydrogenase, C-terminal domain NE421_01950 PF02770 Acyl-CoA dehydrogenase, middle domain NE421_01950 PF02771 Acyl-CoA dehydrogenase, N-terminal domain NE421_01955 PF01554 MatE NE421_01965 PF04055 Radical SAM superfamily NE421_01965 PF06969 HemN C-terminal domain NE421_01970 PF00106 short chain dehydrogenase NE421_01975 PF03466 LysR substrate binding domain NE421_01975 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NE421_01990 PF00501 AMP-binding enzyme NE421_01990 PF13193 AMP-binding enzyme C-terminal domain NE421_01995 PF12111 Polyribonucleotide phosphorylase C terminal NE421_01995 PF10150 Ribonuclease E/G family NE421_01995 PF00575 S1 RNA binding domain NE421_02000 PF00849 RNA pseudouridylate synthase NE421_02000 PF01479 S4 domain NE421_02005 PF13419 Haloacid dehalogenase-like hydrolase NE421_02010 PF13280 WYL domain NE421_02010 PF08279 HTH domain NE421_02015 PF02798 Glutathione S-transferase, N-terminal domain NE421_02025 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NE421_02025 PF03466 LysR substrate binding domain NE421_02030 PF12706 Beta-lactamase superfamily domain NE421_02035 PF00141 Peroxidase NE421_02040 PF01590 GAF domain NE421_02040 PF05524 PEP-utilising enzyme, N-terminal NE421_02040 PF00391 PEP-utilising enzyme, mobile domain NE421_02040 PF02896 PEP-utilising enzyme, TIM barrel domain NE421_02045 PF00293 NUDIX domain NE421_02055 PF03466 LysR substrate binding domain NE421_02055 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NE421_02065 PF00330 Aconitase family (aconitate hydratase) NE421_02070 PF00694 Aconitase C-terminal domain NE421_02080 PF00180 Isocitrate/isopropylmalate dehydrogenase NE421_02095 PF01176 Translation initiation factor 1A / IF-1 NE421_02105 PF01416 tRNA pseudouridine synthase NE421_02125 PF01118 Semialdehyde dehydrogenase, NAD binding domain NE421_02125 PF02774 Semialdehyde dehydrogenase, dimerisation domain NE421_02135 PF00375 Sodium:dicarboxylate symporter family NE421_02145 PF03279 Bacterial lipid A biosynthesis acyltransferase NE421_02150 PF01810 LysE type translocator NE421_02160 PF16326 ABC transporter C-terminal domain NE421_02160 PF12848 ABC transporter NE421_02160 PF00005 ABC transporter NE421_02165 PF04102 SlyX NE421_02170 PF08240 Alcohol dehydrogenase GroES-like domain NE421_02170 PF00107 Zinc-binding dehydrogenase NE421_02175 PF01638 HxlR-like helix-turn-helix NE421_02185 PF08272 Topoisomerase I zinc-ribbon-like NE421_02185 PF01131 DNA topoisomerase NE421_02185 PF01751 Toprim domain NE421_02185 PF01396 Topoisomerase DNA binding C4 zinc finger NE421_02200 PF13361 UvrD-like helicase C-terminal domain NE421_02200 PF00580 UvrD/REP helicase N-terminal domain NE421_02205 PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) NE421_02225 PF00999 Sodium/hydrogen exchanger family NE421_02225 PF02254 TrkA-N domain NE421_02230 PF00471 Ribosomal protein L33 NE421_02235 PF00830 Ribosomal L28 family NE421_02240 PF00171 Aldehyde dehydrogenase family NE421_02250 PF00551 Formyl transferase NE421_02250 PF01842 ACT domain NE421_02260 PF01618 MotA/TolQ/ExbB proton channel family NE421_02270 PF01625 Peptide methionine sulfoxide reductase NE421_02280 PF00186 Dihydrofolate reductase NE421_02285 PF00303 Thymidylate synthase NE421_02300 PF01790 Prolipoprotein diacylglyceryl transferase NE421_02370 PF00902 Sec-independent protein translocase protein (TatC) NE421_02375 PF02416 mttA/Hcf106 family NE421_02380 PF02416 mttA/Hcf106 family NE421_02390 PF01725 Ham1 family NE421_02400 PF00561 alpha/beta hydrolase fold NE421_02400 PF07021 Methionine biosynthesis protein MetW NE421_02405 PF00561 alpha/beta hydrolase fold NE421_02410 PF00682 HMGL-like NE421_02410 PF08502 LeuA allosteric (dimerisation) domain NE421_02415 PF18331 PKHD-type hydroxylase C-terminal domain NE421_02415 PF13640 2OG-Fe(II) oxygenase superfamily NE421_02420 PF00593 TonB dependent receptor NE421_02420 PF07715 TonB-dependent Receptor Plug Domain NE421_02425 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase NE421_02425 PF05697 Bacterial trigger factor protein (TF) NE421_02425 PF05698 Bacterial trigger factor protein (TF) C-terminus NE421_02430 PF00574 Clp protease NE421_02435 PF10431 C-terminal, D2-small domain, of ClpB protein NE421_02435 PF06689 ClpX C4-type zinc finger NE421_02435 PF07724 AAA domain (Cdc48 subfamily) NE421_02450 PF05683 Fumarase C-terminus NE421_02450 PF05681 Fumarate hydratase (Fumerase) NE421_02455 PF07085 DRTGG domain NE421_02455 PF01515 Phosphate acetyl/butaryl transferase NE421_02460 PF00871 Acetokinase family NE421_02465 PF00920 Dehydratase family NE421_02470 PF01081 KDPG and KHG aldolase NE421_02475 PF02447 GntP family permease NE421_02480 PF01202 Shikimate kinase NE421_02485 PF00171 Aldehyde dehydrogenase family NE421_02490 PF00171 Aldehyde dehydrogenase family NE421_02495 PF00561 alpha/beta hydrolase fold NE421_02505 PF00933 Glycosyl hydrolase family 3 N terminal domain NE421_02510 PF17804 Tail specific protease N-terminal domain NE421_02510 PF11818 C-terminal domain of tail specific protease (DUF3340) NE421_02510 PF00595 PDZ domain NE421_02510 PF03572 Peptidase family S41 NE421_02515 PF00534 Glycosyl transferases group 1 NE421_02515 PF13439 Glycosyltransferase Family 4 NE421_02520 PF01569 PAP2 superfamily NE421_02525 PF04384 Iron-sulphur cluster assembly NE421_02530 PF00334 Nucleoside diphosphate kinase NE421_02535 PF04055 Radical SAM superfamily NE421_02545 PF13464 Domain of unknown function (DUF4115) NE421_02550 PF04551 GcpE protein NE421_02555 PF13393 Histidyl-tRNA synthetase NE421_02555 PF03129 Anticodon binding domain NE421_02565 PF13360 PQQ-like domain NE421_02570 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal NE421_02570 PF01926 50S ribosome-binding GTPase NE421_02580 PF02556 Preprotein translocase subunit SecB NE421_02585 PF00462 Glutaredoxin NE421_02595 PF03193 RsgA GTPase NE421_02600 PF00929 Exonuclease NE421_02615 PF02321 Outer membrane efflux protein NE421_02620 PF02687 FtsX-like permease family NE421_02620 PF12704 MacB-like periplasmic core domain NE421_02620 PF00005 ABC transporter NE421_02625 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion NE421_02640 PF09334 tRNA synthetases class I (M) NE421_02640 PF13603 Leucyl-tRNA synthetase, Domain 2 NE421_02640 PF08264 Anticodon-binding domain of tRNA NE421_02640 PF00133 tRNA synthetases class I (I, L, M and V) NE421_02650 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain NE421_02650 PF00205 Thiamine pyrophosphate enzyme, central domain NE421_02650 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain NE421_02655 PF10369 Small subunit of acetolactate synthase NE421_02660 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain NE421_02660 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain NE421_02665 PF03707 Bacterial signalling protein N terminal repeat NE421_02665 PF00990 Diguanylate cyclase, GGDEF domain NE421_02665 PF00563 EAL domain NE421_02685 PF04717 Type VI secretion system, phage-baseplate injector NE421_02685 PF13296 Putative type VI secretion system Rhs element Vgr NE421_02685 PF10106 Uncharacterized protein conserved in bacteria (DUF2345) NE421_02805 PF02384 N-6 DNA Methylase NE421_02805 PF12161 HsdM N-terminal domain NE421_02810 PF01420 Type I restriction modification DNA specificity domain NE421_02830 PF13784 Fic/DOC family N-terminal NE421_02830 PF02661 Fic/DOC family NE421_02845 PF00107 Zinc-binding dehydrogenase NE421_02845 PF08240 Alcohol dehydrogenase GroES-like domain NE421_02850 PF00106 short chain dehydrogenase NE421_02855 PF03466 LysR substrate binding domain NE421_02855 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NE421_02860 PF00107 Zinc-binding dehydrogenase NE421_02860 PF08240 Alcohol dehydrogenase GroES-like domain NE421_02865 PF08659 KR domain NE421_02865 PF00698 Acyl transferase domain NE421_02865 PF08240 Alcohol dehydrogenase GroES-like domain NE421_02865 PF16197 Ketoacyl-synthetase C-terminal extension NE421_02865 PF00109 Beta-ketoacyl synthase, N-terminal domain NE421_02865 PF00107 Zinc-binding dehydrogenase NE421_02865 PF00550 Phosphopantetheine attachment site NE421_02865 PF02801 Beta-ketoacyl synthase, C-terminal domain NE421_02865 PF14765 Polyketide synthase dehydratase NE421_02870 PF02583 Metal-sensitive transcriptional repressor NE421_02875 PF00107 Zinc-binding dehydrogenase NE421_02875 PF08240 Alcohol dehydrogenase GroES-like domain NE421_02880 PF00756 Putative esterase NE421_02890 PF00465 Iron-containing alcohol dehydrogenase NE421_02910 PF16925 Tetracyclin repressor-like, C-terminal domain NE421_02910 PF00440 Bacterial regulatory proteins, tetR family NE421_02915 PF16884 N-terminal domain of oxidoreductase NE421_02915 PF00107 Zinc-binding dehydrogenase NE421_02925 PF04151 Bacterial pre-peptidase C-terminal domain NE421_02940 PF00009 Elongation factor Tu GTP binding domain NE421_02940 PF03144 Elongation factor Tu domain 2 NE421_02940 PF16658 Class II release factor RF3, C-terminal domain NE421_02955 PF01026 TatD related DNase NE421_02960 PF00694 Aconitase C-terminal domain NE421_02960 PF00330 Aconitase family (aconitate hydratase) NE421_02965 PF00899 ThiF family NE421_02975 PF03466 LysR substrate binding domain NE421_02975 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NE421_02985 PF01207 Dihydrouridine synthase (Dus) NE421_02990 PF00589 Phage integrase family NE421_03065 PF04945 YHS domain NE421_03070 PF00672 HAMP domain NE421_03070 PF00512 His Kinase A (phospho-acceptor) domain NE421_03070 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NE421_03075 PF00072 Response regulator receiver domain NE421_03075 PF00486 Transcriptional regulatory protein, C terminal NE421_03085 PF07731 Multicopper oxidase NE421_03085 PF00394 Multicopper oxidase NE421_03085 PF07732 Multicopper oxidase NE421_03105 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion NE421_03110 PF00873 AcrB/AcrD/AcrF family NE421_03120 PF07670 Nucleoside recognition NE421_03120 PF02421 Ferrous iron transport protein B NE421_03120 PF07664 Ferrous iron transport protein B C terminus NE421_03135 PF13411 MerR HTH family regulatory protein NE421_03140 PF03960 ArsC family NE421_03145 PF01022 Bacterial regulatory protein, arsR family NE421_03155 PF01758 Sodium Bile acid symporter family NE421_03160 PF03358 NADPH-dependent FMN reductase NE421_03165 PF07992 Pyridine nucleotide-disulphide oxidoreductase NE421_03195 PF07690 Major Facilitator Superfamily NE421_03205 PF00892 EamA-like transporter family NE421_03210 PF01262 Alanine dehydrogenase/PNT, C-terminal domain NE421_03210 PF05222 Alanine dehydrogenase/PNT, N-terminal domain NE421_03215 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch NE421_03220 PF02233 NAD(P) transhydrogenase beta subunit NE421_03225 PF00106 short chain dehydrogenase NE421_03235 PF01261 Xylose isomerase-like TIM barrel NE421_03240 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase NE421_03240 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase NE421_03245 PF00378 Enoyl-CoA hydratase/isomerase NE421_03250 PF00512 His Kinase A (phospho-acceptor) domain NE421_03250 PF00072 Response regulator receiver domain NE421_03250 PF01627 Hpt domain NE421_03250 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NE421_03250 PF00672 HAMP domain NE421_03250 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) NE421_03255 PF00291 Pyridoxal-phosphate dependent enzyme NE421_03265 PF05958 tRNA (Uracil-5-)-methyltransferase NE421_03270 PF13291 ACT domain NE421_03270 PF04607 Region found in RelA / SpoT proteins NE421_03270 PF02824 TGS domain NE421_03280 PF03819 MazG nucleotide pyrophosphohydrolase domain NE421_03290 PF01743 Poly A polymerase head domain NE421_03290 PF12626 Polymerase A arginine-rich C-terminus NE421_03290 PF12627 Probable RNA and SrmB- binding site of polymerase A NE421_03295 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) NE421_03300 PF02548 Ketopantoate hydroxymethyltransferase NE421_03305 PF02569 Pantoate-beta-alanine ligase NE421_03310 PF03668 P-loop ATPase protein family NE421_03315 PF00381 PTS HPr component phosphorylation site NE421_03320 PF04751 Protein of unknown function (DUF615) NE421_03325 PF00501 AMP-binding enzyme NE421_03325 PF13193 AMP-binding enzyme C-terminal domain NE421_03330 PF03129 Anticodon binding domain NE421_03330 PF02824 TGS domain NE421_03330 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) NE421_03330 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain NE421_03335 PF00707 Translation initiation factor IF-3, C-terminal domain NE421_03335 PF05198 Translation initiation factor IF-3, N-terminal domain NE421_03340 PF00043 Glutathione S-transferase, C-terminal domain NE421_03340 PF02798 Glutathione S-transferase, N-terminal domain NE421_03345 PF09335 SNARE associated Golgi protein NE421_03350 PF07690 Major Facilitator Superfamily NE421_03360 PF01632 Ribosomal protein L35 NE421_03365 PF00453 Ribosomal protein L20 NE421_03385 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain NE421_03385 PF01409 tRNA synthetases class II core domain (F) NE421_03390 PF03483 B3/4 domain NE421_03390 PF03484 tRNA synthetase B5 domain NE421_03390 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain NE421_03390 PF01588 Putative tRNA binding domain NE421_03390 PF03147 Ferredoxin-fold anticodon binding domain NE421_03395 PF00216 Bacterial DNA-binding protein NE421_03410 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain NE421_03410 PF07498 Rho termination factor, N-terminal domain NE421_03410 PF07497 Rho termination factor, RNA-binding domain NE421_03415 PF00085 Thioredoxin NE421_03420 PF02541 Ppx/GppA phosphatase family NE421_03425 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit NE421_03430 PF01171 PP-loop family NE421_03430 PF09179 TilS substrate binding domain NE421_03430 PF11734 TilS substrate C-terminal domain NE421_03435 PF03807 NADP oxidoreductase coenzyme F420-dependent NE421_03435 PF14748 Pyrroline-5-carboxylate reductase dimerisation NE421_03440 PF02325 YGGT family NE421_03445 PF01367 5'-3' exonuclease, C-terminal SAM fold NE421_03445 PF00476 DNA polymerase family A NE421_03445 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain NE421_03445 PF01612 3'-5' exonuclease NE421_03465 PF00437 Type II/IV secretion system protein NE421_03470 PF02566 OsmC-like protein NE421_03475 PF01047 MarR family NE421_03485 PF00795 Carbon-nitrogen hydrolase NE421_03530 PF04963 Sigma-54 factor, core binding domain NE421_03530 PF04552 Sigma-54, DNA binding domain NE421_03530 PF00309 Sigma-54 factor, Activator interacting domain (AID) NE421_03535 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein NE421_03540 PF01722 BolA-like protein NE421_03545 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) NE421_03550 PF01634 ATP phosphoribosyltransferase NE421_03555 PF00815 Histidinol dehydrogenase NE421_03560 PF00155 Aminotransferase class I and II NE421_03565 PF00425 chorismate binding enzyme NE421_03565 PF04715 Anthranilate synthase component I, N terminal region NE421_03570 PF01476 LysM domain NE421_03570 PF00005 ABC transporter NE421_03605 PF00293 NUDIX domain NE421_03610 PF00132 Bacterial transferase hexapeptide (six repeats) NE421_03615 PF00814 Glycoprotease family NE421_03620 PF04445 Putative SAM-dependent methyltransferase NE421_03630 PF00756 Putative esterase NE421_03640 PF00834 Ribulose-phosphate 3 epimerase family NE421_03655 PF07732 Multicopper oxidase NE421_03655 PF00394 Multicopper oxidase NE421_03655 PF07731 Multicopper oxidase NE421_03670 PF00893 Small Multidrug Resistance protein NE421_03675 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain NE421_03675 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain NE421_03680 PF01960 ArgJ family NE421_03685 PF02445 Quinolinate synthetase A protein NE421_03710 PF00962 Adenosine/AMP deaminase NE421_03715 PF00107 Zinc-binding dehydrogenase NE421_03715 PF08240 Alcohol dehydrogenase GroES-like domain NE421_03720 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NE421_03720 PF03466 LysR substrate binding domain NE421_03725 PF02771 Acyl-CoA dehydrogenase, N-terminal domain NE421_03725 PF00441 Acyl-CoA dehydrogenase, C-terminal domain NE421_03725 PF02770 Acyl-CoA dehydrogenase, middle domain NE421_03730 PF07690 Major Facilitator Superfamily NE421_03735 PF02515 CoA-transferase family III NE421_03745 PF14537 Cytochrome c3 NE421_03745 PF00890 FAD binding domain NE421_03750 PF03466 LysR substrate binding domain NE421_03750 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NE421_03760 PF07690 Major Facilitator Superfamily NE421_03765 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NE421_03765 PF03466 LysR substrate binding domain NE421_03805 PF08267 Cobalamin-independent synthase, N-terminal domain NE421_03805 PF01717 Cobalamin-independent synthase, Catalytic domain NE421_03810 PF01613 Flavin reductase like domain NE421_03820 PF07693 KAP family P-loop domain NE421_03825 PF17074 Darcynin, domain of unknown function NE421_03845 PF02567 Phenazine biosynthesis-like protein NE421_03870 PF00665 Integrase core domain NE421_03890 PF01381 Helix-turn-helix NE421_03905 PF01734 Patatin-like phospholipase NE421_03935 PF02604 Antitoxin Phd_YefM, type II toxin-antitoxin system NE421_03950 PF03328 HpcH/HpaI aldolase/citrate lyase family NE421_03955 PF00083 Sugar (and other) transporter NE421_03965 PF00293 NUDIX domain NE421_03965 PF09297 NADH pyrophosphatase zinc ribbon domain NE421_03970 PF00171 Aldehyde dehydrogenase family NE421_03975 PF00296 Luciferase-like monooxygenase NE421_03980 PF01613 Flavin reductase like domain NE421_03985 PF01557 Fumarylacetoacetate (FAA) hydrolase family NE421_03990 PF00892 EamA-like transporter family NE421_04000 PF03466 LysR substrate binding domain NE421_04000 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NE421_04005 PF00375 Sodium:dicarboxylate symporter family NE421_04010 PF01177 Asp/Glu/Hydantoin racemase NE421_04015 PF00268 Ribonucleotide reductase, small chain NE421_04025 PF02867 Ribonucleotide reductase, barrel domain NE421_04025 PF00317 Ribonucleotide reductase, all-alpha domain NE421_04025 PF03477 ATP cone domain NE421_04035 PF00072 Response regulator receiver domain NE421_04035 PF00486 Transcriptional regulatory protein, C terminal NE421_04040 PF00672 HAMP domain NE421_04040 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NE421_04040 PF00512 His Kinase A (phospho-acceptor) domain NE421_04050 PF17151 Periplasmic sensor domain NE421_04050 PF00990 Diguanylate cyclase, GGDEF domain NE421_04055 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 NE421_04060 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit NE421_04065 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit NE421_04065 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit NE421_04075 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region NE421_04075 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit NE421_04075 PF10531 SLBB domain NE421_04080 PF00384 Molybdopterin oxidoreductase NE421_04080 PF04879 Molybdopterin oxidoreductase Fe4S4 domain NE421_04080 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region NE421_04085 PF00146 NADH dehydrogenase NE421_04090 PF12838 4Fe-4S dicluster domain NE421_04095 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 NE421_04100 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L NE421_04105 PF00361 Proton-conducting membrane transporter NE421_04105 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus NE421_04110 PF00361 Proton-conducting membrane transporter NE421_04115 PF00361 Proton-conducting membrane transporter NE421_04125 PF00313 'Cold-shock' DNA-binding domain NE421_04130 PF03466 LysR substrate binding domain NE421_04130 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NE421_04135 PF00175 Oxidoreductase NAD-binding domain NE421_04135 PF00970 Oxidoreductase FAD-binding domain NE421_04150 PF05552 Conserved TM helix NE421_04165 PF00291 Pyridoxal-phosphate dependent enzyme NE421_04170 PF13533 Biotin-lipoyl like NE421_04195 PF01588 Putative tRNA binding domain NE421_04195 PF09334 tRNA synthetases class I (M) NE421_04205 PF10609 NUBPL iron-transfer P-loop NTPase NE421_04210 PF01048 Phosphorylase superfamily NE421_04225 PF00692 dUTPase NE421_04255 PF01207 Dihydrouridine synthase (Dus) NE421_04265 PF00448 SRP54-type protein, GTPase domain NE421_04265 PF02881 SRP54-type protein, helical bundle domain NE421_04265 PF02978 Signal peptide binding domain NE421_04270 PF03309 Type III pantothenate kinase NE421_04280 PF01925 Sulfite exporter TauE/SafE NE421_04290 PF06470 SMC proteins Flexible Hinge Domain NE421_04290 PF02463 RecF/RecN/SMC N terminal domain NE421_04300 PF03119 NAD-dependent DNA ligase C4 zinc finger domain NE421_04300 PF12826 Helix-hairpin-helix motif NE421_04300 PF01653 NAD-dependent DNA ligase adenylation domain NE421_04300 PF00533 BRCA1 C Terminus (BRCT) domain NE421_04300 PF03120 NAD-dependent DNA ligase OB-fold domain NE421_04305 PF00210 Ferritin-like domain NE421_04310 PF07690 Major Facilitator Superfamily NE421_04315 PF00982 Glycosyltransferase family 20 NE421_04320 PF02358 Trehalose-phosphatase NE421_04325 PF08241 Methyltransferase domain NE421_04325 PF12697 Alpha/beta hydrolase family NE421_04330 PF00202 Aminotransferase class-III NE421_04330 PF06968 Biotin and Thiamin Synthesis associated domain NE421_04330 PF04055 Radical SAM superfamily NE421_04335 PF00155 Aminotransferase class I and II NE421_04350 PF00849 RNA pseudouridylate synthase NE421_04350 PF01479 S4 domain NE421_04355 PF04079 Segregation and condensation complex subunit ScpB NE421_04360 PF02616 Segregation and condensation protein ScpA NE421_04365 PF01300 Telomere recombination NE421_04370 PF04315 Elongation factor P hydroxylase NE421_04375 PF02620 Large ribosomal RNA subunit accumulation protein YceD NE421_04380 PF01783 Ribosomal L32p protein family NE421_04385 PF00698 Acyl transferase domain NE421_04395 PF00550 Phosphopantetheine attachment site NE421_04400 PF01476 LysM domain NE421_04400 PF04972 BON domain NE421_04405 PF02581 Thiamine monophosphate synthase NE421_04405 PF03070 TENA/THI-4/PQQC family NE421_04405 PF08543 Phosphomethylpyrimidine kinase NE421_04415 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase NE421_04430 PF02261 Aspartate decarboxylase NE421_04435 PF01195 Peptidyl-tRNA hydrolase NE421_04440 PF01386 Ribosomal L25p family NE421_04445 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase NE421_04445 PF14572 Phosphoribosyl synthetase-associated domain NE421_04470 PF08544 GHMP kinases C terminal NE421_04470 PF00288 GHMP kinases N terminal domain NE421_04475 PF03550 Outer membrane lipoprotein LolB NE421_04485 PF01488 Shikimate / quinate 5-dehydrogenase NE421_04485 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain NE421_04485 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain NE421_04490 PF10410 DnaB-helicase binding domain of primase NE421_04490 PF08278 DNA primase DnaG DnaB-binding NE421_04490 PF08275 DNA primase catalytic core, N-terminal domain NE421_04490 PF01807 CHC2 zinc finger NE421_04495 PF13525 Outer membrane lipoprotein NE421_04500 PF00849 RNA pseudouridylate synthase NE421_04500 PF01479 S4 domain NE421_04505 PF02578 Multi-copper polyphenol oxidoreductase laccase NE421_04510 PF03358 NADPH-dependent FMN reductase NE421_04515 PF01668 SmpB protein NE421_04620 PF00772 DnaB-like helicase N terminal domain NE421_04620 PF03796 DnaB-like helicase C terminal domain NE421_04620 PF14528 LAGLIDADG-like domain NE421_04755 PF09669 Phage regulatory protein Rha (Phage_pRha) NE421_04755 PF10549 ORF11CD3 domain NE421_04860 PF00589 Phage integrase family NE421_04860 PF13356 Arm DNA-binding domain NE421_04865 PF01467 Cytidylyltransferase-like NE421_04870 PF00037 4Fe-4S binding domain NE421_04890 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NE421_04890 PF03466 LysR substrate binding domain NE421_04895 PF00180 Isocitrate/isopropylmalate dehydrogenase NE421_04900 PF02028 BCCT, betaine/carnitine/choline family transporter NE421_04905 PF07859 alpha/beta hydrolase fold NE421_04910 PF00848 Ring hydroxylating alpha subunit (catalytic domain) NE421_04910 PF00355 Rieske [2Fe-2S] domain NE421_04915 PF00171 Aldehyde dehydrogenase family NE421_04920 PF00970 Oxidoreductase FAD-binding domain NE421_04920 PF00111 2Fe-2S iron-sulfur cluster binding domain NE421_04920 PF00175 Oxidoreductase NAD-binding domain NE421_04935 PF00795 Carbon-nitrogen hydrolase NE421_04935 PF02540 NAD synthase NE421_04945 PF02678 Pirin NE421_04945 PF05726 Pirin C-terminal cupin domain NE421_04950 PF03653 Uncharacterised protein family (UPF0093) NE421_04955 PF00109 Beta-ketoacyl synthase, N-terminal domain NE421_04955 PF02801 Beta-ketoacyl synthase, C-terminal domain NE421_04965 PF00164 Ribosomal protein S12/S23 NE421_04970 PF00177 Ribosomal protein S7p/S5e NE421_04975 PF03144 Elongation factor Tu domain 2 NE421_04975 PF00679 Elongation factor G C-terminus NE421_04975 PF00009 Elongation factor Tu GTP binding domain NE421_04975 PF14492 Elongation Factor G, domain II NE421_04975 PF03764 Elongation factor G, domain IV NE421_04980 PF00009 Elongation factor Tu GTP binding domain NE421_04980 PF03144 Elongation factor Tu domain 2 NE421_04980 PF03143 Elongation factor Tu C-terminal domain NE421_04995 PF00583 Acetyltransferase (GNAT) family NE421_05000 PF04376 Arginine-tRNA-protein transferase, N terminus NE421_05000 PF04377 Arginine-tRNA-protein transferase, C terminus NE421_05005 PF03588 Leucyl/phenylalanyl-tRNA protein transferase NE421_05010 PF07992 Pyridine nucleotide-disulphide oxidoreductase NE421_05015 PF13491 4TM region of DNA translocase FtsK/SpoIIIE NE421_05015 PF17854 FtsK alpha domain NE421_05015 PF09397 Ftsk gamma domain NE421_05015 PF01580 FtsK/SpoIIIE family NE421_05020 PF01810 LysE type translocator NE421_05030 PF03776 Septum formation topological specificity factor MinE NE421_05035 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain NE421_05040 PF03775 Septum formation inhibitor MinC, C-terminal domain NE421_05050 PF01553 Acyltransferase NE421_05055 PF00691 OmpA family NE421_05055 PF13488 Glycine zipper NE421_05060 PF13361 UvrD-like helicase C-terminal domain NE421_05060 PF00580 UvrD/REP helicase N-terminal domain NE421_05065 PF00692 dUTPase NE421_05070 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I NE421_05070 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain NE421_05070 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III NE421_05070 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II NE421_05075 PF00696 Amino acid kinase family NE421_05085 PF13230 Glutamine amidotransferases class-II NE421_05090 PF01814 Hemerythrin HHE cation binding domain NE421_05100 PF03658 RnfH family Ubiquitin NE421_05105 PF04355 SmpA / OmlA family NE421_05110 PF01475 Ferric uptake regulator family NE421_05115 PF00437 Type II/IV secretion system protein NE421_05120 PF00437 Type II/IV secretion system protein NE421_05125 PF01168 Alanine racemase, N-terminal domain NE421_05135 PF12320 Type 5 capsule protein repressor C-terminal domain NE421_05135 PF00149 Calcineurin-like phosphoesterase NE421_05155 PF01370 NAD dependent epimerase/dehydratase family NE421_05155 PF08338 Domain of unknown function (DUF1731) NE421_05160 PF01266 FAD dependent oxidoreductase NE421_05165 PF00490 Delta-aminolevulinic acid dehydratase NE421_05170 PF03061 Thioesterase superfamily NE421_05175 PF00529 HlyD membrane-fusion protein of T1SS NE421_05175 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion NE421_05180 PF07690 Major Facilitator Superfamily NE421_05195 PF13356 Arm DNA-binding domain NE421_05195 PF00589 Phage integrase family NE421_05225 PF13520 Amino acid permease NE421_05230 PF02574 Homocysteine S-methyltransferase NE421_05240 PF06039 Malate:quinone oxidoreductase (Mqo) NE421_05245 PF00732 GMC oxidoreductase NE421_05245 PF05199 GMC oxidoreductase NE421_05250 PF00171 Aldehyde dehydrogenase family NE421_05255 PF13977 BetI-type transcriptional repressor, C-terminal NE421_05255 PF00440 Bacterial regulatory proteins, tetR family NE421_05260 PF02028 BCCT, betaine/carnitine/choline family transporter NE421_05265 PF02028 BCCT, betaine/carnitine/choline family transporter NE421_05275 PF03061 Thioesterase superfamily NE421_05285 PF02492 CobW/HypB/UreG, nucleotide-binding domain NE421_05285 PF07683 Cobalamin synthesis protein cobW C-terminal domain NE421_05290 PF00375 Sodium:dicarboxylate symporter family NE421_05295 PF07152 YaeQ protein NE421_05300 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase NE421_05305 PF01522 Polysaccharide deacetylase NE421_05305 PF14883 Hypothetical glycosyl hydrolase family 13 NE421_05310 PF00535 Glycosyl transferase family 2 NE421_05320 PF00378 Enoyl-CoA hydratase/isomerase NE421_05335 PF01614 Bacterial transcriptional regulator NE421_05335 PF09339 IclR helix-turn-helix domain NE421_05340 PF00355 Rieske [2Fe-2S] domain NE421_05350 PF00355 Rieske [2Fe-2S] domain NE421_05360 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily NE421_05365 PF14759 Reductase C-terminal NE421_05365 PF07992 Pyridine nucleotide-disulphide oxidoreductase NE421_05370 PF07690 Major Facilitator Superfamily NE421_05380 PF12697 Alpha/beta hydrolase family NE421_05390 PF01958 Domain of unknown function DUF108 NE421_05390 PF03447 Homoserine dehydrogenase, NAD binding domain NE421_05395 PF00171 Aldehyde dehydrogenase family NE421_05400 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain NE421_05400 PF00205 Thiamine pyrophosphate enzyme, central domain NE421_05400 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain NE421_05410 PF07690 Major Facilitator Superfamily NE421_05415 PF01327 Polypeptide deformylase NE421_05420 PF04960 Glutaminase NE421_05425 PF02311 AraC-like ligand binding domain NE421_05425 PF12833 Helix-turn-helix domain NE421_05430 PF07690 Major Facilitator Superfamily NE421_05435 PF01263 Aldose 1-epimerase NE421_05445 PF03466 LysR substrate binding domain NE421_05445 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NE421_05455 PF07690 Major Facilitator Superfamily NE421_05460 PF00456 Transketolase, thiamine diphosphate binding domain NE421_05465 PF02780 Transketolase, C-terminal domain NE421_05465 PF02779 Transketolase, pyrimidine binding domain NE421_05470 PF02310 B12 binding domain NE421_05470 PF02607 B12 binding domain NE421_05470 PF02965 Vitamin B12 dependent methionine synthase, activation domain NE421_05470 PF00809 Pterin binding enzyme NE421_05470 PF02574 Homocysteine S-methyltransferase NE421_05475 PF01384 Phosphate transporter family NE421_05480 PF00291 Pyridoxal-phosphate dependent enzyme NE421_05495 PF03781 Sulfatase-modifying factor enzyme 1 NE421_05500 PF00884 Sulfatase NE421_05510 PF01106 NifU-like domain NE421_05510 PF01521 Iron-sulphur cluster biosynthesis NE421_05515 PF07715 TonB-dependent Receptor Plug Domain NE421_05515 PF00593 TonB dependent receptor NE421_05525 PF00561 alpha/beta hydrolase fold NE421_05530 PF00484 Carbonic anhydrase NE421_05535 PF13472 GDSL-like Lipase/Acylhydrolase family NE421_05540 PF00005 ABC transporter NE421_05550 PF01694 Rhomboid family NE421_05555 PF00912 Transglycosylase NE421_05560 PF13090 Polyphosphate kinase C-terminal domain 2 NE421_05560 PF02503 Polyphosphate kinase middle domain NE421_05560 PF17941 Polyphosphate kinase C-terminal domain 1 NE421_05560 PF13089 Polyphosphate kinase N-terminal domain NE421_05575 PF03466 LysR substrate binding domain NE421_05575 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NE421_05580 PF00561 alpha/beta hydrolase fold NE421_05585 PF18113 Rubredoxin binding C-terminal domain NE421_05585 PF07992 Pyridine nucleotide-disulphide oxidoreductase NE421_05590 PF00301 Rubredoxin NE421_05605 PF00152 tRNA synthetases class II (D, K and N) NE421_05605 PF01336 OB-fold nucleic acid binding domain NE421_05610 PF14052 Capsule assembly protein Wzi NE421_05620 PF01507 Phosphoadenosine phosphosulfate reductase family NE421_05625 PF00009 Elongation factor Tu GTP binding domain NE421_05640 PF03600 Citrate transporter NE421_05645 PF01595 Cyclin M transmembrane N-terminal domain NE421_05645 PF03471 Transporter associated domain NE421_05645 PF00571 CBS domain NE421_05650 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NE421_05650 PF03466 LysR substrate binding domain NE421_05655 PF00463 Isocitrate lyase family NE421_05670 PF01774 UreD urease accessory protein NE421_05675 PF00547 Urease, gamma subunit NE421_05680 PF00699 Urease beta subunit NE421_05685 PF01979 Amidohydrolase family NE421_05685 PF00449 Urease alpha-subunit, N-terminal domain NE421_05690 PF05194 UreE urease accessory protein, C-terminal domain NE421_05690 PF02814 UreE urease accessory protein, N-terminal domain NE421_05695 PF01730 UreF NE421_05700 PF02492 CobW/HypB/UreG, nucleotide-binding domain NE421_05715 PF03717 Penicillin-binding Protein dimerisation domain NE421_05715 PF00905 Penicillin binding protein transpeptidase domain NE421_05730 PF05191 Adenylate kinase, active site lid NE421_05740 PF10576 Iron-sulfur binding domain of endonuclease III NE421_05740 PF00633 Helix-hairpin-helix motif NE421_05740 PF00730 HhH-GPD superfamily base excision DNA repair protein NE421_05745 PF04060 Putative Fe-S cluster NE421_05750 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase NE421_05750 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain NE421_05760 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase NE421_05765 PF02590 Predicted SPOUT methyltransferase NE421_05770 PF05362 Lon protease (S16) C-terminal proteolytic domain NE421_05770 PF02190 ATP-dependent protease La (LON) substrate-binding domain NE421_05770 PF00004 ATPase family associated with various cellular activities (AAA) NE421_05775 PF01812 5-formyltetrahydrofolate cyclo-ligase family NE421_05815 PF05195 Aminopeptidase P, N-terminal domain NE421_05815 PF00557 Metallopeptidase family M24 NE421_05820 PF01494 FAD binding domain NE421_05825 PF01494 FAD binding domain NE421_05835 PF13411 MerR HTH family regulatory protein NE421_05845 PF01810 LysE type translocator NE421_05850 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NE421_05850 PF03466 LysR substrate binding domain NE421_05860 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases NE421_05865 PF02021 Uncharacterised protein family UPF0102 NE421_05870 PF04972 BON domain NE421_05880 PF00293 NUDIX domain NE421_05880 PF09297 NADH pyrophosphatase zinc ribbon domain NE421_05890 PF00929 Exonuclease NE421_05895 PF01476 LysM domain NE421_05895 PF01464 Transglycosylase SLT domain NE421_05895 PF01476 LysM domain NE421_05895 PF01464 Transglycosylase SLT domain NE421_05900 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle NE421_05905 PF00528 Binding-protein-dependent transport system inner membrane component NE421_05910 PF12911 N-terminal TM domain of oligopeptide transport permease C NE421_05910 PF00528 Binding-protein-dependent transport system inner membrane component NE421_05915 PF08352 Oligopeptide/dipeptide transporter, C-terminal region NE421_05915 PF00005 ABC transporter NE421_05920 PF00724 NADH:flavin oxidoreductase / NADH oxidase family NE421_05920 PF07992 Pyridine nucleotide-disulphide oxidoreductase NE421_05925 PF07715 TonB-dependent Receptor Plug Domain NE421_05925 PF00593 TonB dependent receptor NE421_05935 PF00929 Exonuclease NE421_05940 PF01979 Amidohydrolase family NE421_05945 PF00360 Phytochrome region NE421_05945 PF00990 Diguanylate cyclase, GGDEF domain NE421_05945 PF01590 GAF domain NE421_05945 PF00563 EAL domain NE421_05950 PF00764 Arginosuccinate synthase NE421_05955 PF00724 NADH:flavin oxidoreductase / NADH oxidase family NE421_05955 PF07992 Pyridine nucleotide-disulphide oxidoreductase NE421_05965 PF13356 Arm DNA-binding domain NE421_05965 PF00589 Phage integrase family NE421_06050 PF00529 HlyD membrane-fusion protein of T1SS NE421_06050 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion NE421_06055 PF00873 AcrB/AcrD/AcrF family NE421_06075 PF07690 Major Facilitator Superfamily NE421_06090 PF16916 Dimerisation domain of Zinc Transporter NE421_06090 PF01545 Cation efflux family NE421_06100 PF02417 Chromate transporter NE421_06105 PF09828 Chromate resistance exported protein NE421_06110 PF13676 TIR domain NE421_06120 PF03180 NLPA lipoprotein NE421_06130 PF00884 Sulfatase NE421_06135 PF03781 Sulfatase-modifying factor enzyme 1 NE421_06145 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NE421_06145 PF03466 LysR substrate binding domain NE421_06150 PF07690 Major Facilitator Superfamily NE421_06170 PF00171 Aldehyde dehydrogenase family NE421_06175 PF00465 Iron-containing alcohol dehydrogenase NE421_06180 PF00775 Dioxygenase NE421_06180 PF04444 Catechol dioxygenase N terminus NE421_06195 PF01144 Coenzyme A transferase NE421_06200 PF01144 Coenzyme A transferase NE421_06205 PF00108 Thiolase, N-terminal domain NE421_06205 PF02803 Thiolase, C-terminal domain NE421_06220 PF03783 Curli production assembly/transport component CsgG NE421_06230 PF05643 Putative bacterial lipoprotein (DUF799) NE421_06240 PF00324 Amino acid permease NE421_06245 PF01266 FAD dependent oxidoreductase NE421_06250 PF00324 Amino acid permease NE421_06260 PF07729 FCD domain NE421_06260 PF00392 Bacterial regulatory proteins, gntR family NE421_06270 PF00171 Aldehyde dehydrogenase family NE421_06280 PF00202 Aminotransferase class-III NE421_06285 PF04958 Arginine N-succinyltransferase beta subunit NE421_06290 PF00324 Amino acid permease NE421_06295 PF00171 Aldehyde dehydrogenase family NE421_06300 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term NE421_06300 PF12833 Helix-turn-helix domain NE421_06305 PF00892 EamA-like transporter family NE421_06310 PF04295 D-galactarate dehydratase / Altronate hydrolase, C terminus NE421_06310 PF08666 SAF domain NE421_06315 PF07690 Major Facilitator Superfamily NE421_06320 PF13378 Enolase C-terminal domain-like NE421_06325 PF00701 Dihydrodipicolinate synthetase family NE421_06330 PF00171 Aldehyde dehydrogenase family NE421_06335 PF07729 FCD domain NE421_06335 PF00392 Bacterial regulatory proteins, gntR family NE421_06340 PF07519 Tannase and feruloyl esterase NE421_06355 PF03573 outer membrane porin, OprD family NE421_06360 PF02771 Acyl-CoA dehydrogenase, N-terminal domain NE421_06360 PF02770 Acyl-CoA dehydrogenase, middle domain NE421_06360 PF00441 Acyl-CoA dehydrogenase, C-terminal domain NE421_06370 PF00171 Aldehyde dehydrogenase family NE421_06375 PF00378 Enoyl-CoA hydratase/isomerase NE421_06380 PF07690 Major Facilitator Superfamily NE421_06395 PF00175 Oxidoreductase NAD-binding domain NE421_06395 PF00111 2Fe-2S iron-sulfur cluster binding domain NE421_06400 PF00355 Rieske [2Fe-2S] domain NE421_06410 PF03781 Sulfatase-modifying factor enzyme 1 NE421_06415 PF00884 Sulfatase NE421_06420 PF07690 Major Facilitator Superfamily NE421_06425 PF03573 outer membrane porin, OprD family NE421_06430 PF05199 GMC oxidoreductase NE421_06435 PF07859 alpha/beta hydrolase fold NE421_06440 PF00106 short chain dehydrogenase NE421_06445 PF00743 Flavin-binding monooxygenase-like NE421_06450 PF12833 Helix-turn-helix domain NE421_06455 PF05683 Fumarase C-terminus NE421_06460 PF05681 Fumarate hydratase (Fumerase) NE421_06465 PF07690 Major Facilitator Superfamily NE421_06470 PF03466 LysR substrate binding domain NE421_06470 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NE421_06475 PF04072 Leucine carboxyl methyltransferase NE421_06480 PF00743 Flavin-binding monooxygenase-like NE421_06485 PF00106 short chain dehydrogenase NE421_06495 PF17932 Tetracyclin repressor-like, C-terminal domain NE421_06495 PF00440 Bacterial regulatory proteins, tetR family NE421_06500 PF17954 Quercetinase C-terminal cupin domain NE421_06500 PF02678 Pirin NE421_06510 PF00106 short chain dehydrogenase NE421_06515 PF00743 Flavin-binding monooxygenase-like NE421_06525 PF00860 Permease family NE421_06530 PF00962 Adenosine/AMP deaminase NE421_06535 PF01292 Prokaryotic cytochrome b561 NE421_06545 PF01351 Ribonuclease HII NE421_06550 PF02599 Global regulator protein family NE421_06555 PF00696 Amino acid kinase family NE421_06555 PF13840 ACT domain NE421_06555 PF01842 ACT domain NE421_06560 PF02272 DHHA1 domain NE421_06560 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain NE421_06560 PF01411 tRNA synthetases class II (A) NE421_06565 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain NE421_06565 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain NE421_06570 PF13393 Histidyl-tRNA synthetase NE421_06575 PF00709 Adenylosuccinate synthetase NE421_06590 PF00248 Aldo/keto reductase family NE421_06595 PF00027 Cyclic nucleotide-binding domain NE421_06595 PF13545 Crp-like helix-turn-helix domain NE421_06605 PF02566 OsmC-like protein NE421_06620 PF17871 AAA lid domain NE421_06620 PF02861 Clp amino terminal domain, pathogenicity island component NE421_06620 PF10431 C-terminal, D2-small domain, of ClpB protein NE421_06620 PF00004 ATPase family associated with various cellular activities (AAA) NE421_06620 PF07724 AAA domain (Cdc48 subfamily) NE421_06635 PF10672 S-adenosylmethionine-dependent methyltransferase NE421_06635 PF02926 THUMP domain NE421_06635 PF01170 Putative RNA methylase family UPF0020 NE421_06645 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain NE421_06645 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain NE421_06650 PF01979 Amidohydrolase family NE421_06655 PF00691 OmpA family NE421_06655 PF13488 Glycine zipper NE421_06665 PF00043 Glutathione S-transferase, C-terminal domain NE421_06665 PF13417 Glutathione S-transferase, N-terminal domain NE421_06670 PF02390 Putative methyltransferase NE421_06680 PF00043 Glutathione S-transferase, C-terminal domain NE421_06680 PF02798 Glutathione S-transferase, N-terminal domain NE421_06690 PF13192 Thioredoxin domain NE421_06690 PF07992 Pyridine nucleotide-disulphide oxidoreductase NE421_06710 PF00578 AhpC/TSA family NE421_06710 PF10417 C-terminal domain of 1-Cys peroxiredoxin NE421_06715 PF00271 Helicase conserved C-terminal domain NE421_06715 PF04408 Helicase associated domain (HA2) NE421_06715 PF11898 Domain of unknown function (DUF3418) NE421_06715 PF00270 DEAD/DEAH box helicase NE421_06715 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold NE421_06720 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal NE421_06720 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III NE421_06730 PF07690 Major Facilitator Superfamily NE421_06735 PF03594 Benzoate membrane transport protein NE421_06740 PF00106 short chain dehydrogenase NE421_06745 PF00175 Oxidoreductase NAD-binding domain NE421_06745 PF00111 2Fe-2S iron-sulfur cluster binding domain NE421_06745 PF00970 Oxidoreductase FAD-binding domain NE421_06755 PF00355 Rieske [2Fe-2S] domain NE421_06755 PF00848 Ring hydroxylating alpha subunit (catalytic domain) NE421_06765 PF03466 LysR substrate binding domain NE421_06765 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NE421_06775 PF00175 Oxidoreductase NAD-binding domain NE421_06775 PF00111 2Fe-2S iron-sulfur cluster binding domain NE421_06775 PF00970 Oxidoreductase FAD-binding domain NE421_06785 PF02332 Methane/Phenol/Toluene Hydroxylase NE421_06785 PF04945 YHS domain NE421_06790 PF02406 MmoB/DmpM family NE421_06795 PF02332 Methane/Phenol/Toluene Hydroxylase NE421_06800 PF06099 Phenol hydroxylase subunit NE421_06810 PF00158 Sigma-54 interaction domain NE421_06810 PF02830 V4R domain NE421_06810 PF06505 Activator of aromatic catabolism NE421_06810 PF02954 Bacterial regulatory protein, Fis family NE421_06820 PF00403 Heavy-metal-associated domain NE421_06825 PF09278 MerR, DNA binding NE421_06825 PF00376 MerR family regulatory protein NE421_06860 PF13742 OB-fold nucleic acid binding domain NE421_06860 PF02601 Exonuclease VII, large subunit NE421_06890 PF01810 LysE type translocator NE421_06895 PF00313 'Cold-shock' DNA-binding domain NE421_06905 PF14748 Pyrroline-5-carboxylate reductase dimerisation NE421_06905 PF03807 NADP oxidoreductase coenzyme F420-dependent NE421_06930 PF07690 Major Facilitator Superfamily NE421_06935 PF01638 HxlR-like helix-turn-helix NE421_06990 PF01406 tRNA synthetases class I (C) catalytic domain NE421_06990 PF09190 DALR domain NE421_06995 PF00571 CBS domain NE421_06995 PF01380 SIS domain NE421_07010 PF03968 OstA-like protein NE421_07015 PF00005 ABC transporter NE421_07015 PF12399 Branched-chain amino acid ATP-binding cassette transporter NE421_07025 PF02321 Outer membrane efflux protein NE421_07030 PF00005 ABC transporter NE421_07030 PF03412 Peptidase C39 family NE421_07030 PF00664 ABC transporter transmembrane region NE421_07040 PF01205 Uncharacterized protein family UPF0029 NE421_07045 PF00132 Bacterial transferase hexapeptide (six repeats) NE421_07055 PF01596 O-methyltransferase NE421_07065 PF00037 4Fe-4S binding domain NE421_07065 PF11953 Domain of unknown function (DUF3470) NE421_07075 PF05192 MutS domain III NE421_07075 PF05190 MutS family domain IV NE421_07075 PF00488 MutS domain V NE421_07075 PF05188 MutS domain II NE421_07075 PF01624 MutS domain I NE421_07080 PF01037 Lrp/AsnC ligand binding domain NE421_07085 PF00892 EamA-like transporter family NE421_07090 PF03707 Bacterial signalling protein N terminal repeat NE421_07090 PF00990 Diguanylate cyclase, GGDEF domain NE421_07090 PF00563 EAL domain NE421_07095 PF03279 Bacterial lipid A biosynthesis acyltransferase NE421_07110 PF07690 Major Facilitator Superfamily NE421_07130 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain NE421_07130 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain NE421_07150 PF03466 LysR substrate binding domain NE421_07150 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NE421_07155 PF01566 Natural resistance-associated macrophage protein NE421_07160 PF03746 LamB/YcsF family NE421_07165 PF07286 Protein of unknown function (DUF1445) NE421_07175 PF00364 Biotin-requiring enzyme NE421_07175 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain NE421_07175 PF02785 Biotin carboxylase C-terminal domain NE421_07175 PF00289 Biotin carboxylase, N-terminal domain NE421_07180 PF00654 Voltage gated chloride channel NE421_07185 PF17287 POTRA domain NE421_07185 PF08479 POTRA domain, ShlB-type NE421_07185 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB NE421_07190 PF13332 Hemagglutinin repeat NE421_07190 PF04829 Pre-toxin domain with VENN motif NE421_07190 PF05860 haemagglutination activity domain NE421_07190 PF13018 Extended Signal Peptide of Type V secretion system NE421_07200 PF00440 Bacterial regulatory proteins, tetR family NE421_07210 PF08240 Alcohol dehydrogenase GroES-like domain NE421_07210 PF13823 Alcohol dehydrogenase GroES-associated NE421_07210 PF00107 Zinc-binding dehydrogenase NE421_07225 PF00289 Biotin carboxylase, N-terminal domain NE421_07225 PF02785 Biotin carboxylase C-terminal domain NE421_07225 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain NE421_07230 PF02525 Flavodoxin-like fold NE421_07235 PF01638 HxlR-like helix-turn-helix NE421_07245 PF08753 NikR C terminal nickel binding domain NE421_07245 PF01402 Ribbon-helix-helix protein, copG family NE421_07250 PF01425 Amidase NE421_07255 PF00497 Bacterial extracellular solute-binding proteins, family 3 NE421_07260 PF00005 ABC transporter NE421_07275 PF10106 Uncharacterized protein conserved in bacteria (DUF2345) NE421_07275 PF04717 Type VI secretion system, phage-baseplate injector NE421_07275 PF13296 Putative type VI secretion system Rhs element Vgr NE421_07325 PF05943 Type VI secretion protein, EvpB/VC_A0108, tail sheath NE421_07340 PF05947 Type VI secretion system, TssF NE421_07355 PF06761 Intracellular multiplication and human macrophage-killing NE421_07355 PF14331 ImcF-related N-terminal domain NE421_07355 PF06744 Type VI secretion protein IcmF C-terminal NE421_07365 PF00691 OmpA family NE421_07365 PF01389 OmpA-like transmembrane domain NE421_07380 PF00004 ATPase family associated with various cellular activities (AAA) NE421_07380 PF07724 AAA domain (Cdc48 subfamily) NE421_07380 PF17871 AAA lid domain NE421_07380 PF10431 C-terminal, D2-small domain, of ClpB protein NE421_07385 PF06812 ImpA, N-terminal, type VI secretion system NE421_07390 PF05936 Bacterial Type VI secretion, VC_A0110, EvfL, ImpJ, VasE NE421_07410 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NE421_07410 PF03466 LysR substrate binding domain NE421_07420 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region NE421_07425 PF07690 Major Facilitator Superfamily NE421_07440 PF02677 Epoxyqueuosine reductase QueH NE421_07450 PF00376 MerR family regulatory protein NE421_07450 PF09278 MerR, DNA binding NE421_07460 PF00701 Dihydrodipicolinate synthetase family NE421_07470 PF00392 Bacterial regulatory proteins, gntR family NE421_07475 PF05544 Proline racemase NE421_07480 PF01266 FAD dependent oxidoreductase NE421_07490 PF04324 BFD-like [2Fe-2S] binding domain NE421_07490 PF07992 Pyridine nucleotide-disulphide oxidoreductase NE421_07500 PF00083 Sugar (and other) transporter NE421_07505 PF00171 Aldehyde dehydrogenase family NE421_07510 PF13520 Amino acid permease NE421_07515 PF03315 Serine dehydratase beta chain NE421_07515 PF03313 Serine dehydratase alpha chain NE421_07520 PF01575 MaoC like domain NE421_07520 PF00171 Aldehyde dehydrogenase family NE421_07525 PF05138 Phenylacetic acid catabolic protein NE421_07530 PF06243 Phenylacetic acid degradation B NE421_07535 PF05138 Phenylacetic acid catabolic protein NE421_07540 PF01883 Iron-sulfur cluster assembly protein NE421_07545 PF00175 Oxidoreductase NAD-binding domain NE421_07545 PF00111 2Fe-2S iron-sulfur cluster binding domain NE421_07545 PF00970 Oxidoreductase FAD-binding domain NE421_07550 PF00378 Enoyl-CoA hydratase/isomerase NE421_07555 PF00378 Enoyl-CoA hydratase/isomerase NE421_07560 PF18321 3-hydroxybutyryl-CoA dehydrogenase reduced Rossmann-fold domain NE421_07560 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain NE421_07560 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain NE421_07565 PF02803 Thiolase, C-terminal domain NE421_07565 PF00108 Thiolase, N-terminal domain NE421_07570 PF14535 AMP-binding enzyme C-terminal domain NE421_07570 PF00501 AMP-binding enzyme NE421_07575 PF07848 PaaX-like protein NE421_07575 PF08223 PaaX-like protein C-terminal domain NE421_07580 PF00132 Bacterial transferase hexapeptide (six repeats) NE421_07585 PF03061 Thioesterase superfamily NE421_07605 PF00199 Catalase NE421_07610 PF01292 Prokaryotic cytochrome b561 NE421_07630 PF12697 Alpha/beta hydrolase family NE421_07635 PF01613 Flavin reductase like domain NE421_07640 PF00296 Luciferase-like monooxygenase NE421_07645 PF00171 Aldehyde dehydrogenase family NE421_07655 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin NE421_07665 PF00171 Aldehyde dehydrogenase family NE421_07670 PF02627 Carboxymuconolactone decarboxylase family NE421_07675 PF03466 LysR substrate binding domain NE421_07675 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NE421_07680 PF02525 Flavodoxin-like fold NE421_07685 PF01614 Bacterial transcriptional regulator NE421_07685 PF09339 IclR helix-turn-helix domain NE421_07690 PF01494 FAD binding domain NE421_07695 PF07702 UTRA domain NE421_07695 PF00392 Bacterial regulatory proteins, gntR family NE421_07705 PF08402 TOBE domain NE421_07705 PF00005 ABC transporter NE421_07710 PF00528 Binding-protein-dependent transport system inner membrane component NE421_07715 PF01266 FAD dependent oxidoreductase NE421_07720 PF00266 Aminotransferase class-V NE421_07725 PF13419 Haloacid dehalogenase-like hydrolase NE421_07730 PF07690 Major Facilitator Superfamily NE421_07735 PF02771 Acyl-CoA dehydrogenase, N-terminal domain NE421_07735 PF02770 Acyl-CoA dehydrogenase, middle domain NE421_07735 PF00441 Acyl-CoA dehydrogenase, C-terminal domain NE421_07740 PF02515 CoA-transferase family III NE421_07745 PF09339 IclR helix-turn-helix domain NE421_07750 PF00378 Enoyl-CoA hydratase/isomerase NE421_07755 PF03060 Nitronate monooxygenase NE421_07760 PF07690 Major Facilitator Superfamily NE421_07765 PF09339 IclR helix-turn-helix domain NE421_07770 PF02803 Thiolase, C-terminal domain NE421_07770 PF00108 Thiolase, N-terminal domain NE421_07775 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain NE421_07775 PF18321 3-hydroxybutyryl-CoA dehydrogenase reduced Rossmann-fold domain NE421_07775 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain NE421_07785 PF00378 Enoyl-CoA hydratase/isomerase NE421_07790 PF02771 Acyl-CoA dehydrogenase, N-terminal domain NE421_07790 PF02770 Acyl-CoA dehydrogenase, middle domain NE421_07790 PF00441 Acyl-CoA dehydrogenase, C-terminal domain NE421_07795 PF07690 Major Facilitator Superfamily NE421_07800 PF01144 Coenzyme A transferase NE421_07805 PF01144 Coenzyme A transferase NE421_07815 PF07690 Major Facilitator Superfamily NE421_07825 PF02771 Acyl-CoA dehydrogenase, N-terminal domain NE421_07825 PF00441 Acyl-CoA dehydrogenase, C-terminal domain NE421_07825 PF02770 Acyl-CoA dehydrogenase, middle domain NE421_07825 PF12806 Acetyl-CoA dehydrogenase C-terminal like NE421_07840 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NE421_07840 PF03466 LysR substrate binding domain NE421_07845 PF00682 HMGL-like NE421_07850 PF00364 Biotin-requiring enzyme NE421_07850 PF18140 Propionyl-coenzyme A carboxylase BT domain NE421_07850 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain NE421_07850 PF00289 Biotin carboxylase, N-terminal domain NE421_07850 PF02785 Biotin carboxylase C-terminal domain NE421_07855 PF00378 Enoyl-CoA hydratase/isomerase NE421_07860 PF01039 Carboxyl transferase domain NE421_07865 PF02770 Acyl-CoA dehydrogenase, middle domain NE421_07865 PF02771 Acyl-CoA dehydrogenase, N-terminal domain NE421_07865 PF00441 Acyl-CoA dehydrogenase, C-terminal domain NE421_07870 PF00440 Bacterial regulatory proteins, tetR family NE421_07875 PF00501 AMP-binding enzyme NE421_07875 PF13193 AMP-binding enzyme C-terminal domain NE421_07895 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NE421_07895 PF03466 LysR substrate binding domain NE421_07930 PF02464 Competence-damaged protein NE421_07930 PF00994 Probable molybdopterin binding domain NE421_07930 PF18146 Damage-inducible protein CinA KH domain NE421_07940 PF00199 Catalase NE421_07940 PF18011 C-terminal domain found in long catalases NE421_07940 PF06628 Catalase-related immune-responsive NE421_07965 PF00717 Peptidase S24-like NE421_07975 PF13404 AsnC-type helix-turn-helix domain NE421_07975 PF01037 Lrp/AsnC ligand binding domain NE421_07985 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NE421_07985 PF00072 Response regulator receiver domain NE421_07985 PF09308 LuxQ, periplasmic NE421_07985 PF00512 His Kinase A (phospho-acceptor) domain NE421_07990 PF00072 Response regulator receiver domain NE421_08005 PF00528 Binding-protein-dependent transport system inner membrane component NE421_08010 PF00528 Binding-protein-dependent transport system inner membrane component NE421_08015 PF00005 ABC transporter NE421_08020 PF00497 Bacterial extracellular solute-binding proteins, family 3 NE421_08025 PF00497 Bacterial extracellular solute-binding proteins, family 3 NE421_08035 PF03466 LysR substrate binding domain NE421_08035 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NE421_08040 PF01810 LysE type translocator NE421_08050 PF00266 Aminotransferase class-V NE421_08060 PF00132 Bacterial transferase hexapeptide (six repeats) NE421_08065 PF00581 Rhodanese-like domain NE421_08075 PF03466 LysR substrate binding domain NE421_08075 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NE421_08080 PF02798 Glutathione S-transferase, N-terminal domain NE421_08085 PF14834 Glutathione S-transferase, C-terminal domain NE421_08085 PF02798 Glutathione S-transferase, N-terminal domain NE421_08090 PF03466 LysR substrate binding domain NE421_08090 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NE421_08095 PF03788 LrgA family NE421_08100 PF04172 LrgB-like family NE421_08105 PF00392 Bacterial regulatory proteins, gntR family NE421_08125 PF00106 short chain dehydrogenase NE421_08130 PF16957 Malonate decarboxylase, alpha subunit, transporter NE421_08135 PF01874 ATP:dephospho-CoA triphosphoribosyl transferase NE421_08140 PF06857 Malonate decarboxylase delta subunit (MdcD) NE421_08145 PF01039 Carboxyl transferase domain NE421_08155 PF10620 Phosphoribosyl-dephospho-CoA transferase MdcG NE421_08160 PF00698 Acyl transferase domain NE421_08175 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NE421_08175 PF03466 LysR substrate binding domain NE421_08180 PF00392 Bacterial regulatory proteins, gntR family NE421_08180 PF00155 Aminotransferase class I and II NE421_08190 PF02322 Cytochrome bd terminal oxidase subunit II NE421_08195 PF01654 Cytochrome bd terminal oxidase subunit I NE421_08210 PF00296 Luciferase-like monooxygenase NE421_08215 PF00083 Sugar (and other) transporter NE421_08225 PF04069 Substrate binding domain of ABC-type glycine betaine transport system NE421_08230 PF00005 ABC transporter NE421_08235 PF00528 Binding-protein-dependent transport system inner membrane component NE421_08240 PF02668 Taurine catabolism dioxygenase TauD, TfdA family NE421_08245 PF01177 Asp/Glu/Hydantoin racemase NE421_08250 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin NE421_08260 PF03466 LysR substrate binding domain NE421_08260 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NE421_08280 PF03960 ArsC family NE421_08285 PF01022 Bacterial regulatory protein, arsR family NE421_08290 PF01758 Sodium Bile acid symporter family NE421_08295 PF03466 LysR substrate binding domain NE421_08295 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NE421_08310 PF13192 Thioredoxin domain NE421_08310 PF07992 Pyridine nucleotide-disulphide oxidoreductase NE421_08325 PF00132 Bacterial transferase hexapeptide (six repeats) NE421_08330 PF00588 SpoU rRNA Methylase family NE421_08335 PF07733 Bacterial DNA polymerase III alpha NTPase domain NE421_08335 PF14579 Helix-hairpin-helix motif NE421_08335 PF02811 PHP domain NE421_08335 PF01336 OB-fold nucleic acid binding domain NE421_08335 PF17657 Bacterial DNA polymerase III alpha subunit finger domain NE421_08340 PF17763 Glutaminase/Asparaginase C-terminal domain NE421_08340 PF00710 Asparaginase, N-terminal NE421_08345 PF00375 Sodium:dicarboxylate symporter family NE421_08350 PF00155 Aminotransferase class I and II NE421_08355 PF01641 SelR domain NE421_08360 PF00255 Glutathione peroxidase NE421_08365 PF12852 Cupin NE421_08365 PF12833 Helix-turn-helix domain NE421_08375 PF00155 Aminotransferase class I and II NE421_08380 PF08335 GlnD PII-uridylyltransferase NE421_08380 PF01966 HD domain NE421_08380 PF01909 Nucleotidyltransferase domain NE421_08385 PF02222 ATP-grasp domain NE421_08395 PF05437 Branched-chain amino acid transport protein (AzlD) NE421_08400 PF03591 AzlC protein NE421_08425 PF06071 Protein of unknown function (DUF933) NE421_08425 PF01926 50S ribosome-binding GTPase NE421_08430 PF00528 Binding-protein-dependent transport system inner membrane component NE421_08435 PF00005 ABC transporter NE421_08435 PF09383 NIL domain NE421_08440 PF03180 NLPA lipoprotein NE421_08445 PF03180 NLPA lipoprotein NE421_08450 PF00296 Luciferase-like monooxygenase NE421_08460 PF02771 Acyl-CoA dehydrogenase, N-terminal domain NE421_08460 PF08028 Acyl-CoA dehydrogenase, C-terminal domain NE421_08475 PF00528 Binding-protein-dependent transport system inner membrane component NE421_08480 PF00528 Binding-protein-dependent transport system inner membrane component NE421_08485 PF00005 ABC transporter NE421_08495 PF01037 Lrp/AsnC ligand binding domain NE421_08500 PF01709 Transcriptional regulator NE421_08510 PF00440 Bacterial regulatory proteins, tetR family NE421_08530 PF03466 LysR substrate binding domain NE421_08530 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NE421_08540 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin NE421_08550 PF00892 EamA-like transporter family NE421_08570 PF00577 Outer membrane usher protein NE421_08570 PF13953 PapC C-terminal domain NE421_08570 PF13954 PapC N-terminal domain NE421_08575 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain NE421_08575 PF02753 Pili assembly chaperone PapD, C-terminal domain NE421_08580 PF16970 Type-1 fimbrial protein, A NE421_08595 PF06968 Biotin and Thiamin Synthesis associated domain NE421_08595 PF04055 Radical SAM superfamily NE421_08600 PF08331 Domain of unknown function (DUF1730) NE421_08605 PF01256 Carbohydrate kinase NE421_08605 PF03853 YjeF-related protein N-terminus NE421_08610 PF02075 Crossover junction endodeoxyribonuclease RuvC NE421_08625 PF00905 Penicillin binding protein transpeptidase domain NE421_08645 PF02772 S-adenosylmethionine synthetase, central domain NE421_08645 PF02773 S-adenosylmethionine synthetase, C-terminal domain NE421_08645 PF00438 S-adenosylmethionine synthetase, N-terminal domain NE421_08650 PF00456 Transketolase, thiamine diphosphate binding domain NE421_08650 PF02780 Transketolase, C-terminal domain NE421_08650 PF02779 Transketolase, pyrimidine binding domain NE421_08660 PF04264 YceI-like domain NE421_08670 PF09992 Phosphodiester glycosidase NE421_08680 PF05958 tRNA (Uracil-5-)-methyltransferase NE421_08685 PF04229 GrpB protein NE421_08690 PF18327 Proline utilization A proline dehydrogenase N-terminal domain NE421_08690 PF01619 Proline dehydrogenase NE421_08690 PF00171 Aldehyde dehydrogenase family NE421_08690 PF14850 DNA-binding domain of Proline dehydrogenase NE421_08695 PF01037 Lrp/AsnC ligand binding domain NE421_08700 PF00474 Sodium:solute symporter family NE421_08705 PF02146 Sir2 family NE421_08710 PF01597 Glycine cleavage H-protein NE421_08715 PF12833 Helix-turn-helix domain NE421_08715 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term NE421_08725 PF00005 ABC transporter NE421_08725 PF00664 ABC transporter transmembrane region NE421_08730 PF09831 Uncharacterized protein conserved in bacteria (DUF2058) NE421_08735 PF06912 Protein of unknown function (DUF1275) NE421_08740 PF00375 Sodium:dicarboxylate symporter family NE421_08755 PF08007 Cupin superfamily protein NE421_08760 PF02545 Maf-like protein NE421_08770 PF00162 Phosphoglycerate kinase NE421_08780 PF01116 Fructose-bisphosphate aldolase class-II NE421_08785 PF09312 SurA N-terminal domain NE421_08785 PF00639 PPIC-type PPIASE domain NE421_08790 PF03968 OstA-like protein NE421_08790 PF04453 LPS transport system D NE421_08795 PF01636 Phosphotransferase enzyme family NE421_08800 PF00483 Nucleotidyl transferase NE421_08805 PF02527 rRNA small subunit methyltransferase G NE421_08810 PF13614 AAA domain NE421_08815 PF02195 ParB-like nuclease domain NE421_08815 PF17762 HTH domain found in ParB protein NE421_08820 PF01618 MotA/TolQ/ExbB proton channel family NE421_08830 PF00664 ABC transporter transmembrane region NE421_08830 PF00005 ABC transporter NE421_08835 PF02606 Tetraacyldisaccharide-1-P 4'-kinase NE421_08840 PF02348 Cytidylyltransferase NE421_08845 PF09115 DNA polymerase III, delta subunit, C terminal NE421_08855 PF01026 TatD related DNase NE421_08870 PF02501 Type II secretion system (T2SS), protein I NE421_08870 PF07963 Prokaryotic N-terminal methylation motif NE421_08875 PF11612 Type II secretion system (T2SS), protein J NE421_08875 PF07963 Prokaryotic N-terminal methylation motif NE421_08880 PF03934 Type II secretion system (T2SS), protein K NE421_08890 PF03167 Uracil DNA glycosylase superfamily NE421_08900 PF14437 MafB19-like deaminase NE421_08910 PF02224 Cytidylate kinase NE421_08915 PF00575 S1 RNA binding domain NE421_08920 PF00216 Bacterial DNA-binding protein NE421_08930 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family NE421_08940 PF00743 Flavin-binding monooxygenase-like NE421_08950 PF03969 AFG1-like ATPase NE421_08955 PF01274 Malate synthase NE421_08965 PF02472 Biopolymer transport protein ExbD/TolR NE421_08970 PF02472 Biopolymer transport protein ExbD/TolR NE421_08975 PF01618 MotA/TolQ/ExbB proton channel family NE421_08985 PF07715 TonB-dependent Receptor Plug Domain NE421_08985 PF00593 TonB dependent receptor NE421_09005 PF01432 Peptidase family M3 NE421_09010 PF00528 Binding-protein-dependent transport system inner membrane component NE421_09015 PF00528 Binding-protein-dependent transport system inner membrane component NE421_09020 PF00005 ABC transporter NE421_09020 PF08352 Oligopeptide/dipeptide transporter, C-terminal region NE421_09035 PF00459 Inositol monophosphatase family NE421_09045 PF01649 Ribosomal protein S20 NE421_09050 PF13460 NAD(P)H-binding NE421_09055 PF03737 Aldolase/RraA NE421_09075 PF02559 CarD-like/TRCF domain NE421_09075 PF00270 DEAD/DEAH box helicase NE421_09075 PF00271 Helicase conserved C-terminal domain NE421_09075 PF03461 TRCF domain NE421_09075 PF17757 UvrB interaction domain NE421_09085 PF00211 Adenylate and Guanylate cyclase catalytic domain NE421_09090 PF00111 2Fe-2S iron-sulfur cluster binding domain NE421_09095 PF00012 Hsp70 protein NE421_09100 PF07743 HSCB C-terminal oligomerisation domain NE421_09100 PF00226 DnaJ domain NE421_09105 PF01521 Iron-sulphur cluster biosynthesis NE421_09110 PF01592 NifU-like N terminal domain NE421_09115 PF00266 Aminotransferase class-V NE421_09120 PF02082 Transcriptional regulator NE421_09135 PF00216 Bacterial DNA-binding protein NE421_09140 PF00639 PPIC-type PPIASE domain NE421_09140 PF09312 SurA N-terminal domain NE421_09145 PF12833 Helix-turn-helix domain NE421_09145 PF12852 Cupin NE421_09150 PF00487 Fatty acid desaturase NE421_09155 PF02771 Acyl-CoA dehydrogenase, N-terminal domain NE421_09155 PF02770 Acyl-CoA dehydrogenase, middle domain NE421_09155 PF00441 Acyl-CoA dehydrogenase, C-terminal domain NE421_09160 PF02770 Acyl-CoA dehydrogenase, middle domain NE421_09160 PF02771 Acyl-CoA dehydrogenase, N-terminal domain NE421_09160 PF00441 Acyl-CoA dehydrogenase, C-terminal domain NE421_09165 PF03109 ABC1 family NE421_09175 PF04073 Aminoacyl-tRNA editing domain NE421_09180 PF06276 Ferric iron reductase FhuF-like transporter NE421_09180 PF04183 IucA / IucC family NE421_09185 PF13434 L-lysine 6-monooxygenase (NADPH-requiring) NE421_09190 PF07690 Major Facilitator Superfamily NE421_09195 PF04183 IucA / IucC family NE421_09195 PF06276 Ferric iron reductase FhuF-like transporter NE421_09200 PF06276 Ferric iron reductase FhuF-like transporter NE421_09200 PF04183 IucA / IucC family NE421_09210 PF03737 Aldolase/RraA NE421_09215 PF00593 TonB dependent receptor NE421_09215 PF07715 TonB-dependent Receptor Plug Domain NE421_09240 PF13419 Haloacid dehalogenase-like hydrolase NE421_09250 PF02283 Cobinamide kinase / cobinamide phosphate guanyltransferase NE421_09255 PF02277 Phosphoribosyltransferase NE421_09260 PF00300 Histidine phosphatase superfamily (branch 1) NE421_09270 PF02654 Cobalamin-5-phosphate synthase NE421_09275 PF00793 DAHP synthetase I family NE421_09280 PF01925 Sulfite exporter TauE/SafE NE421_09300 PF00593 TonB dependent receptor NE421_09300 PF07715 TonB-dependent Receptor Plug Domain NE421_09305 PF02684 Lipid-A-disaccharide synthetase NE421_09315 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion NE421_09320 PF00005 ABC transporter NE421_09355 PF01230 HIT domain NE421_09385 PF08241 Methyltransferase domain NE421_09390 PF00561 alpha/beta hydrolase fold NE421_09395 PF01053 Cys/Met metabolism PLP-dependent enzyme NE421_09405 PF02575 YbaB/EbfC DNA-binding family NE421_09410 PF02132 RecR protein NE421_09410 PF13662 Toprim domain NE421_09415 PF01612 3'-5' exonuclease NE421_09415 PF00570 HRDC domain NE421_09435 PF05166 YcgL domain NE421_09445 PF01434 Peptidase family M41 NE421_09445 PF17862 AAA+ lid domain NE421_09445 PF00004 ATPase family associated with various cellular activities (AAA) NE421_09455 PF00291 Pyridoxal-phosphate dependent enzyme NE421_09460 PF05175 Methyltransferase small domain NE421_09465 PF01264 Chorismate synthase NE421_09470 PF08448 PAS fold NE421_09470 PF00990 Diguanylate cyclase, GGDEF domain NE421_09485 PF04055 Radical SAM superfamily NE421_09490 PF00676 Dehydrogenase E1 component NE421_09495 PF02780 Transketolase, C-terminal domain NE421_09495 PF02779 Transketolase, pyrimidine binding domain NE421_09500 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) NE421_09500 PF00364 Biotin-requiring enzyme NE421_09500 PF02817 e3 binding domain NE421_09505 PF07992 Pyridine nucleotide-disulphide oxidoreductase NE421_09505 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain NE421_09510 PF00106 short chain dehydrogenase NE421_09515 PF08240 Alcohol dehydrogenase GroES-like domain NE421_09515 PF00107 Zinc-binding dehydrogenase NE421_09520 PF01062 Bestrophin, RFP-TM, chloride channel NE421_09525 PF00072 Response regulator receiver domain NE421_09525 PF00158 Sigma-54 interaction domain NE421_09525 PF02954 Bacterial regulatory protein, Fis family NE421_09530 PF04273 Putative phosphatase (DUF442) NE421_09530 PF00753 Metallo-beta-lactamase superfamily NE421_09545 PF01925 Sulfite exporter TauE/SafE NE421_09560 PF06445 GyrI-like small molecule binding domain NE421_09560 PF12833 Helix-turn-helix domain NE421_09565 PF01638 HxlR-like helix-turn-helix NE421_09570 PF02525 Flavodoxin-like fold NE421_09580 PF07702 UTRA domain NE421_09580 PF00392 Bacterial regulatory proteins, gntR family NE421_09595 PF04069 Substrate binding domain of ABC-type glycine betaine transport system NE421_09600 PF00528 Binding-protein-dependent transport system inner membrane component NE421_09605 PF00005 ABC transporter NE421_09620 PF00083 Sugar (and other) transporter NE421_09625 PF07715 TonB-dependent Receptor Plug Domain NE421_09625 PF00593 TonB dependent receptor NE421_09630 PF10415 Fumarase C C-terminus NE421_09630 PF00206 Lyase NE421_09645 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NE421_09645 PF03466 LysR substrate binding domain NE421_09650 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NE421_09650 PF03466 LysR substrate binding domain NE421_09655 PF02803 Thiolase, C-terminal domain NE421_09655 PF00108 Thiolase, N-terminal domain NE421_09660 PF02667 Short chain fatty acid transporter NE421_09665 PF01144 Coenzyme A transferase NE421_09670 PF01144 Coenzyme A transferase NE421_09675 PF03466 LysR substrate binding domain NE421_09675 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NE421_09695 PF00440 Bacterial regulatory proteins, tetR family NE421_09715 PF06719 AraC-type transcriptional regulator N-terminus NE421_09715 PF12833 Helix-turn-helix domain NE421_09720 PF07690 Major Facilitator Superfamily NE421_09725 PF01738 Dienelactone hydrolase family NE421_09740 PF01613 Flavin reductase like domain NE421_09750 PF14525 AraC-binding-like domain NE421_09750 PF12833 Helix-turn-helix domain NE421_09755 PF00970 Oxidoreductase FAD-binding domain NE421_09755 PF00111 2Fe-2S iron-sulfur cluster binding domain NE421_09755 PF00175 Oxidoreductase NAD-binding domain NE421_09760 PF00866 Ring hydroxylating beta subunit NE421_09765 PF00355 Rieske [2Fe-2S] domain NE421_09765 PF00848 Ring hydroxylating alpha subunit (catalytic domain) NE421_09770 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NE421_09770 PF03459 TOBE domain NE421_09780 PF00528 Binding-protein-dependent transport system inner membrane component NE421_09785 PF00005 ABC transporter NE421_09785 PF03459 TOBE domain NE421_09790 PF00106 short chain dehydrogenase NE421_09795 PF00857 Isochorismatase family NE421_09795 PF00550 Phosphopantetheine attachment site NE421_09805 PF00149 Calcineurin-like phosphoesterase NE421_09810 PF13089 Polyphosphate kinase N-terminal domain NE421_09810 PF17941 Polyphosphate kinase C-terminal domain 1 NE421_09810 PF02503 Polyphosphate kinase middle domain NE421_09810 PF13090 Polyphosphate kinase C-terminal domain 2 NE421_09815 PF08042 PqqA family NE421_09820 PF12706 Beta-lactamase superfamily domain NE421_09825 PF03070 TENA/THI-4/PQQC family NE421_09830 PF05402 Coenzyme PQQ synthesis protein D (PqqD) NE421_09835 PF13186 Iron-sulfur cluster-binding domain NE421_09835 PF04055 Radical SAM superfamily NE421_09840 PF01244 Membrane dipeptidase (Peptidase family M19) NE421_09855 PF13091 PLD-like domain NE421_09870 PF00199 Catalase NE421_09880 PF08240 Alcohol dehydrogenase GroES-like domain NE421_09880 PF00107 Zinc-binding dehydrogenase NE421_09895 PF00419 Fimbrial protein NE421_09900 PF13953 PapC C-terminal domain NE421_09900 PF00577 Outer membrane usher protein NE421_09900 PF13954 PapC N-terminal domain NE421_09905 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain NE421_09905 PF02753 Pili assembly chaperone PapD, C-terminal domain NE421_09910 PF16970 Type-1 fimbrial protein, A NE421_09930 PF00296 Luciferase-like monooxygenase NE421_09935 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle NE421_09940 PF00528 Binding-protein-dependent transport system inner membrane component NE421_09945 PF00528 Binding-protein-dependent transport system inner membrane component NE421_09945 PF12911 N-terminal TM domain of oligopeptide transport permease C NE421_09950 PF00005 ABC transporter NE421_09950 PF08352 Oligopeptide/dipeptide transporter, C-terminal region NE421_09955 PF02771 Acyl-CoA dehydrogenase, N-terminal domain NE421_09955 PF08028 Acyl-CoA dehydrogenase, C-terminal domain NE421_09955 PF02770 Acyl-CoA dehydrogenase, middle domain NE421_09965 PF00664 ABC transporter transmembrane region NE421_09965 PF00005 ABC transporter NE421_09970 PF00664 ABC transporter transmembrane region NE421_09970 PF00005 ABC transporter NE421_09990 PF00296 Luciferase-like monooxygenase NE421_09995 PF00158 Sigma-54 interaction domain NE421_10000 PF00902 Sec-independent protein translocase protein (TatC) NE421_10005 PF02416 mttA/Hcf106 family NE421_10010 PF02416 mttA/Hcf106 family NE421_10015 PF00005 ABC transporter NE421_10020 PF00528 Binding-protein-dependent transport system inner membrane component NE421_10025 PF00528 Binding-protein-dependent transport system inner membrane component NE421_10030 PF09084 NMT1/THI5 like NE421_10035 PF00296 Luciferase-like monooxygenase NE421_10040 PF03544 Gram-negative bacterial TonB protein C-terminal NE421_10045 PF01618 MotA/TolQ/ExbB proton channel family NE421_10050 PF02472 Biopolymer transport protein ExbD/TolR NE421_10055 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle NE421_10065 PF00593 TonB dependent receptor NE421_10065 PF07715 TonB-dependent Receptor Plug Domain NE421_10070 PF00296 Luciferase-like monooxygenase NE421_10190 PF00665 Integrase core domain NE421_10190 PF13936 Helix-turn-helix domain NE421_10260 PF00378 Enoyl-CoA hydratase/isomerase NE421_10265 PF09339 IclR helix-turn-helix domain NE421_10265 PF01614 Bacterial transcriptional regulator NE421_10270 PF00682 HMGL-like NE421_10275 PF02515 CoA-transferase family III NE421_10280 PF02770 Acyl-CoA dehydrogenase, middle domain NE421_10280 PF00441 Acyl-CoA dehydrogenase, C-terminal domain NE421_10280 PF02771 Acyl-CoA dehydrogenase, N-terminal domain NE421_10285 PF07690 Major Facilitator Superfamily NE421_10295 PF01979 Amidohydrolase family NE421_10305 PF17760 UvrA interaction domain NE421_10305 PF00005 ABC transporter NE421_10305 PF17755 UvrA DNA-binding domain NE421_10310 PF00873 AcrB/AcrD/AcrF family NE421_10315 PF00529 HlyD membrane-fusion protein of T1SS NE421_10315 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion NE421_10320 PF00072 Response regulator receiver domain NE421_10320 PF00486 Transcriptional regulatory protein, C terminal NE421_10325 PF00672 HAMP domain NE421_10325 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NE421_10325 PF00512 His Kinase A (phospho-acceptor) domain NE421_10325 PF16527 Two-component sensor protein CpxA, periplasmic domain NE421_10340 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NE421_10340 PF03466 LysR substrate binding domain NE421_10345 PF12146 Serine aminopeptidase, S33 NE421_10375 PF02824 TGS domain NE421_10375 PF04607 Region found in RelA / SpoT proteins NE421_10375 PF13291 ACT domain NE421_10385 PF01975 Survival protein SurE NE421_10410 PF07690 Major Facilitator Superfamily NE421_10415 PF13533 Biotin-lipoyl like NE421_10430 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family NE421_10435 PF14572 Phosphoribosyl synthetase-associated domain NE421_10435 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase NE421_10455 PF00005 ABC transporter NE421_10460 PF01032 FecCD transport family NE421_10470 PF08240 Alcohol dehydrogenase GroES-like domain NE421_10470 PF00107 Zinc-binding dehydrogenase NE421_10485 PF06719 AraC-type transcriptional regulator N-terminus NE421_10485 PF12833 Helix-turn-helix domain NE421_10490 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase NE421_10490 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase NE421_10495 PF07690 Major Facilitator Superfamily NE421_10500 PF01370 NAD dependent epimerase/dehydratase family NE421_10505 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NE421_10505 PF03466 LysR substrate binding domain NE421_10515 PF00920 Dehydratase family NE421_10520 PF00171 Aldehyde dehydrogenase family NE421_10535 PF00529 HlyD membrane-fusion protein of T1SS NE421_10535 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion NE421_10545 PF07690 Major Facilitator Superfamily NE421_10550 PF01557 Fumarylacetoacetate (FAA) hydrolase family NE421_10555 PF13417 Glutathione S-transferase, N-terminal domain NE421_10560 PF01494 FAD binding domain NE421_10565 PF07883 Cupin domain NE421_10570 PF03466 LysR substrate binding domain NE421_10570 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NE421_10585 PF03466 LysR substrate binding domain NE421_10585 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NE421_10595 PF08450 SMP-30/Gluconolactonase/LRE-like region NE421_10600 PF07702 UTRA domain NE421_10600 PF00392 Bacterial regulatory proteins, gntR family NE421_10610 PF04909 Amidohydrolase NE421_10615 PF07690 Major Facilitator Superfamily NE421_10660 PF07687 Peptidase dimerisation domain NE421_10660 PF01546 Peptidase family M20/M25/M40 NE421_10670 PF00999 Sodium/hydrogen exchanger family NE421_10670 PF02254 TrkA-N domain NE421_10675 PF07995 Glucose / Sorbosone dehydrogenase NE421_10680 PF03466 LysR substrate binding domain NE421_10680 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NE421_10685 PF00857 Isochorismatase family NE421_10695 PF00440 Bacterial regulatory proteins, tetR family NE421_10695 PF08359 YsiA-like protein, C-terminal region NE421_10700 PF12706 Beta-lactamase superfamily domain NE421_10710 PF07992 Pyridine nucleotide-disulphide oxidoreductase NE421_10720 PF00376 MerR family regulatory protein NE421_10720 PF09278 MerR, DNA binding NE421_10725 PF01872 RibD C-terminal domain NE421_10730 PF00106 short chain dehydrogenase NE421_10740 PF01047 MarR family NE421_10745 PF07859 alpha/beta hydrolase fold NE421_10765 PF00561 alpha/beta hydrolase fold NE421_10775 PF00171 Aldehyde dehydrogenase family NE421_10780 PF08240 Alcohol dehydrogenase GroES-like domain NE421_10780 PF00107 Zinc-binding dehydrogenase NE421_10785 PF00474 Sodium:solute symporter family NE421_10790 PF04341 Protein of unknown function, DUF485 NE421_10795 PF13193 AMP-binding enzyme C-terminal domain NE421_10795 PF00501 AMP-binding enzyme NE421_10800 PF02954 Bacterial regulatory protein, Fis family NE421_10800 PF06506 Propionate catabolism activator NE421_10800 PF00158 Sigma-54 interaction domain NE421_10810 PF02771 Acyl-CoA dehydrogenase, N-terminal domain NE421_10810 PF02770 Acyl-CoA dehydrogenase, middle domain NE421_10810 PF00441 Acyl-CoA dehydrogenase, C-terminal domain NE421_10825 PF01636 Phosphotransferase enzyme family NE421_10830 PF00171 Aldehyde dehydrogenase family NE421_10840 PF07690 Major Facilitator Superfamily NE421_10845 PF00920 Dehydratase family NE421_10850 PF00392 Bacterial regulatory proteins, gntR family NE421_10850 PF07729 FCD domain NE421_10860 PF03466 LysR substrate binding domain NE421_10860 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NE421_10865 PF13378 Enolase C-terminal domain-like NE421_10865 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain NE421_10870 PF02426 Muconolactone delta-isomerase NE421_10875 PF04444 Catechol dioxygenase N terminus NE421_10875 PF00775 Dioxygenase NE421_10880 PF01144 Coenzyme A transferase NE421_10885 PF01144 Coenzyme A transferase NE421_10890 PF02803 Thiolase, C-terminal domain NE421_10890 PF00108 Thiolase, N-terminal domain NE421_10895 PF12146 Serine aminopeptidase, S33 NE421_10900 PF00171 Aldehyde dehydrogenase family NE421_10910 PF01179 Copper amine oxidase, enzyme domain NE421_10910 PF02727 Copper amine oxidase, N2 domain NE421_10910 PF02728 Copper amine oxidase, N3 domain NE421_10910 PF07833 Copper amine oxidase N-terminal domain NE421_10915 PF02311 AraC-like ligand binding domain NE421_10915 PF12833 Helix-turn-helix domain NE421_10920 PF01613 Flavin reductase like domain NE421_10925 PF00111 2Fe-2S iron-sulfur cluster binding domain NE421_10925 PF00175 Oxidoreductase NAD-binding domain NE421_10940 PF00848 Ring hydroxylating alpha subunit (catalytic domain) NE421_10940 PF00355 Rieske [2Fe-2S] domain NE421_10955 PF08028 Acyl-CoA dehydrogenase, C-terminal domain NE421_10960 PF01425 Amidase NE421_10970 PF07690 Major Facilitator Superfamily NE421_10980 PF00106 short chain dehydrogenase NE421_10995 PF02771 Acyl-CoA dehydrogenase, N-terminal domain NE421_10995 PF02770 Acyl-CoA dehydrogenase, middle domain NE421_10995 PF00441 Acyl-CoA dehydrogenase, C-terminal domain NE421_11000 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NE421_11000 PF03466 LysR substrate binding domain NE421_11005 PF01614 Bacterial transcriptional regulator NE421_11005 PF09339 IclR helix-turn-helix domain NE421_11010 PF00753 Metallo-beta-lactamase superfamily NE421_11020 PF04143 Sulphur transport NE421_11030 PF01011 PQQ enzyme repeat NE421_11030 PF13360 PQQ-like domain NE421_11035 PF04966 Carbohydrate-selective porin, OprB family NE421_11040 PF05048 Periplasmic copper-binding protein (NosD) NE421_11045 PF01487 Type I 3-dehydroquinase NE421_11050 PF00775 Dioxygenase NE421_11055 PF00775 Dioxygenase NE421_11055 PF12391 Protocatechuate 3,4-dioxygenase beta subunit N terminal NE421_11060 PF02627 Carboxymuconolactone decarboxylase family NE421_11065 PF07690 Major Facilitator Superfamily NE421_11070 PF00561 alpha/beta hydrolase fold NE421_11075 PF10397 Adenylosuccinate lyase C-terminus NE421_11075 PF00206 Lyase NE421_11080 PF00108 Thiolase, N-terminal domain NE421_11080 PF02803 Thiolase, C-terminal domain NE421_11085 PF01144 Coenzyme A transferase NE421_11090 PF01144 Coenzyme A transferase NE421_11095 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase NE421_11100 PF04977 Septum formation initiator NE421_11105 PF04239 Protein of unknown function (DUF421) NE421_11110 PF03952 Enolase, N-terminal domain NE421_11110 PF00113 Enolase, C-terminal TIM barrel domain NE421_11115 PF00793 DAHP synthetase I family NE421_11120 PF06418 CTP synthase N-terminus NE421_11120 PF00117 Glutamine amidotransferase class-I NE421_11150 PF00724 NADH:flavin oxidoreductase / NADH oxidase family NE421_11150 PF07992 Pyridine nucleotide-disulphide oxidoreductase NE421_11165 PF00793 DAHP synthetase I family NE421_11170 PF02694 Uncharacterised BCR, YnfA/UPF0060 family NE421_11175 PF02861 Clp amino terminal domain, pathogenicity island component NE421_11175 PF17871 AAA lid domain NE421_11175 PF07724 AAA domain (Cdc48 subfamily) NE421_11175 PF00004 ATPase family associated with various cellular activities (AAA) NE421_11175 PF10431 C-terminal, D2-small domain, of ClpB protein NE421_11180 PF02617 ATP-dependent Clp protease adaptor protein ClpS NE421_11190 PF01118 Semialdehyde dehydrogenase, NAD binding domain NE421_11190 PF02774 Semialdehyde dehydrogenase, dimerisation domain NE421_11205 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) NE421_11210 PF00585 C-terminal regulatory domain of Threonine dehydratase NE421_11210 PF00291 Pyridoxal-phosphate dependent enzyme NE421_11215 PF02254 TrkA-N domain NE421_11215 PF02080 TrkA-C domain NE421_11220 PF02386 Cation transport protein NE421_11225 PF02253 Phospholipase A1 NE421_11230 PF00675 Insulinase (Peptidase family M16) NE421_11230 PF05193 Peptidase M16 inactive domain NE421_11230 PF08367 Peptidase M16C associated NE421_11235 PF07715 TonB-dependent Receptor Plug Domain NE421_11235 PF00593 TonB dependent receptor NE421_11240 PF00294 pfkB family carbohydrate kinase NE421_11250 PF07290 Protein of unknown function (DUF1449) NE421_11260 PF01654 Cytochrome bd terminal oxidase subunit I NE421_11265 PF02322 Cytochrome bd terminal oxidase subunit II NE421_11270 PF08173 Membrane bound YbgT-like protein NE421_11280 PF09829 Uncharacterized protein conserved in bacteria (DUF2057) NE421_11290 PF00448 SRP54-type protein, GTPase domain NE421_11290 PF02881 SRP54-type protein, helical bundle domain NE421_11315 PF00571 CBS domain NE421_11315 PF00478 IMP dehydrogenase / GMP reductase domain NE421_11320 PF00202 Aminotransferase class-III NE421_11325 PF00462 Glutaredoxin NE421_11335 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NE421_11335 PF03466 LysR substrate binding domain NE421_11340 PF00557 Metallopeptidase family M24 NE421_11345 PF05525 Branched-chain amino acid transport protein NE421_11370 PF05524 PEP-utilising enzyme, N-terminal NE421_11370 PF00391 PEP-utilising enzyme, mobile domain NE421_11370 PF00381 PTS HPr component phosphorylation site NE421_11370 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 NE421_11370 PF02896 PEP-utilising enzyme, TIM barrel domain NE421_11375 PF00294 pfkB family carbohydrate kinase NE421_11380 PF02378 Phosphotransferase system, EIIC NE421_11380 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit NE421_11395 PF00563 EAL domain NE421_11395 PF00990 Diguanylate cyclase, GGDEF domain NE421_11395 PF03707 Bacterial signalling protein N terminal repeat NE421_11405 PF07995 Glucose / Sorbosone dehydrogenase NE421_11415 PF00916 Sulfate permease family NE421_11415 PF01740 STAS domain NE421_11420 PF05922 Peptidase inhibitor I9 NE421_11420 PF00082 Subtilase family NE421_11435 PF00324 Amino acid permease NE421_11440 PF00266 Aminotransferase class-V NE421_11445 PF01037 Lrp/AsnC ligand binding domain NE421_11470 PF13419 Haloacid dehalogenase-like hydrolase NE421_11475 PF01479 S4 domain NE421_11480 PF00154 recA bacterial DNA recombination protein NE421_11485 PF02631 RecX family NE421_11500 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 NE421_11500 PF00132 Bacterial transferase hexapeptide (six repeats) NE421_11505 PF07977 FabA-like domain NE421_11510 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD NE421_11510 PF00132 Bacterial transferase hexapeptide (six repeats) NE421_11520 PF07244 Surface antigen variable number repeat NE421_11520 PF01103 Surface antigen NE421_11525 PF17820 PDZ domain NE421_11525 PF02163 Peptidase family M50 NE421_11525 PF13180 PDZ domain NE421_11530 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain NE421_11530 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase NE421_11530 PF13288 DXP reductoisomerase C-terminal domain NE421_11540 PF01255 Putative undecaprenyl diphosphate synthase NE421_11545 PF01765 Ribosome recycling factor NE421_11550 PF00696 Amino acid kinase family NE421_11555 PF00919 Uncharacterized protein family UPF0004 NE421_11555 PF04055 Radical SAM superfamily NE421_11555 PF18693 TRAM domain NE421_11565 PF00512 His Kinase A (phospho-acceptor) domain NE421_11565 PF00989 PAS fold NE421_11565 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NE421_11570 PF02954 Bacterial regulatory protein, Fis family NE421_11570 PF00158 Sigma-54 interaction domain NE421_11570 PF00072 Response regulator receiver domain NE421_11575 PF00440 Bacterial regulatory proteins, tetR family NE421_11580 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain NE421_11580 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain NE421_11590 PF02542 YgbB family NE421_11600 PF01266 FAD dependent oxidoreductase NE421_11620 PF10415 Fumarase C C-terminus NE421_11620 PF00206 Lyase NE421_11625 PF16363 GDP-mannose 4,6 dehydratase NE421_11630 PF02635 DsrE/DsrF-like family NE421_11650 PF00892 EamA-like transporter family NE421_11655 PF00155 Aminotransferase class I and II NE421_11655 PF00392 Bacterial regulatory proteins, gntR family NE421_11660 PF01638 HxlR-like helix-turn-helix NE421_11665 PF00994 Probable molybdopterin binding domain NE421_11665 PF03454 MoeA C-terminal region (domain IV) NE421_11665 PF03453 MoeA N-terminal region (domain I and II) NE421_11670 PF01967 MoaC family NE421_11670 PF00994 Probable molybdopterin binding domain NE421_11675 PF02391 MoaE protein NE421_11685 PF04055 Radical SAM superfamily NE421_11685 PF06463 Molybdenum Cofactor Synthesis C NE421_11690 PF01568 Molydopterin dinucleotide binding domain NE421_11690 PF00384 Molybdopterin oxidoreductase NE421_11690 PF04879 Molybdopterin oxidoreductase Fe4S4 domain NE421_11695 PF12804 MobA-like NTP transferase domain NE421_11700 PF04324 BFD-like [2Fe-2S] binding domain NE421_11700 PF04879 Molybdopterin oxidoreductase Fe4S4 domain NE421_11700 PF00384 Molybdopterin oxidoreductase NE421_11700 PF01568 Molydopterin dinucleotide binding domain NE421_11705 PF18267 Rubredoxin NAD+ reductase C-terminal domain NE421_11705 PF07992 Pyridine nucleotide-disulphide oxidoreductase NE421_11705 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain NE421_11705 PF04324 BFD-like [2Fe-2S] binding domain NE421_11705 PF01077 Nitrite and sulphite reductase 4Fe-4S domain NE421_11710 PF18267 Rubredoxin NAD+ reductase C-terminal domain NE421_11710 PF13806 Rieske-like [2Fe-2S] domain NE421_11710 PF07992 Pyridine nucleotide-disulphide oxidoreductase NE421_11710 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain NE421_11710 PF04324 BFD-like [2Fe-2S] binding domain NE421_11710 PF01077 Nitrite and sulphite reductase 4Fe-4S domain NE421_11720 PF00072 Response regulator receiver domain NE421_11720 PF00486 Transcriptional regulatory protein, C terminal NE421_11725 PF00005 ABC transporter NE421_11735 PF13438 Domain of unknown function (DUF4113) NE421_11735 PF00817 impB/mucB/samB family NE421_11735 PF11799 impB/mucB/samB family C-terminal domain NE421_11740 PF01220 Dehydroquinase class II NE421_11745 PF00364 Biotin-requiring enzyme NE421_11750 PF02785 Biotin carboxylase C-terminal domain NE421_11750 PF00289 Biotin carboxylase, N-terminal domain NE421_11750 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain NE421_11760 PF12832 MFS_1 like family NE421_11780 PF01645 Conserved region in glutamate synthase NE421_11795 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain NE421_11795 PF01565 FAD binding domain NE421_11800 PF01451 Low molecular weight phosphotyrosine protein phosphatase NE421_11810 PF00465 Iron-containing alcohol dehydrogenase NE421_11815 PF03061 Thioesterase superfamily NE421_11820 PF05506 Domain of unknown function (DUF756) NE421_11820 PF04185 Phosphoesterase family NE421_11830 PF12168 DNA polymerase III subunits tau domain IV DnaB-binding NE421_11830 PF12169 DNA polymerase III subunits gamma and tau domain III NE421_11830 PF12170 DNA polymerase III tau subunit V interacting with alpha NE421_11845 PF07690 Major Facilitator Superfamily NE421_11855 PF00144 Beta-lactamase NE421_11860 PF01575 MaoC like domain NE421_11870 PF02803 Thiolase, C-terminal domain NE421_11870 PF00108 Thiolase, N-terminal domain NE421_11880 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NE421_11880 PF03466 LysR substrate binding domain NE421_11885 PF00923 Transaldolase/Fructose-6-phosphate aldolase NE421_11890 PF01810 LysE type translocator NE421_11895 PF01037 Lrp/AsnC ligand binding domain NE421_11900 PF03594 Benzoate membrane transport protein NE421_11905 PF02308 MgtC family NE421_11910 PF00689 Cation transporting ATPase, C-terminus NE421_11910 PF00690 Cation transporter/ATPase, N-terminus NE421_11935 PF00582 Universal stress protein family NE421_11940 PF00005 ABC transporter NE421_11940 PF12848 ABC transporter NE421_11960 PF07715 TonB-dependent Receptor Plug Domain NE421_11960 PF00593 TonB dependent receptor NE421_11990 PF00924 Mechanosensitive ion channel NE421_11995 PF00593 TonB dependent receptor NE421_11995 PF07715 TonB-dependent Receptor Plug Domain NE421_12025 PF01494 FAD binding domain NE421_12030 PF03466 LysR substrate binding domain NE421_12030 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NE421_12035 PF07690 Major Facilitator Superfamily NE421_12040 PF07690 Major Facilitator Superfamily NE421_12045 PF07992 Pyridine nucleotide-disulphide oxidoreductase NE421_12045 PF14759 Reductase C-terminal NE421_12050 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase NE421_12055 PF00106 short chain dehydrogenase NE421_12060 PF00355 Rieske [2Fe-2S] domain NE421_12065 PF00866 Ring hydroxylating beta subunit NE421_12070 PF00355 Rieske [2Fe-2S] domain NE421_12070 PF00848 Ring hydroxylating alpha subunit (catalytic domain) NE421_12075 PF03466 LysR substrate binding domain NE421_12075 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NE421_12080 PF00561 alpha/beta hydrolase fold NE421_12085 PF03573 outer membrane porin, OprD family NE421_12090 PF07836 DmpG-like communication domain NE421_12090 PF00682 HMGL-like NE421_12095 PF01118 Semialdehyde dehydrogenase, NAD binding domain NE421_12095 PF09290 Prokaryotic acetaldehyde dehydrogenase, dimerisation NE421_12100 PF01557 Fumarylacetoacetate (FAA) hydrolase family NE421_12110 PF07690 Major Facilitator Superfamily NE421_12115 PF12706 Beta-lactamase superfamily domain NE421_12125 PF02656 Domain of unknown function (DUF202) NE421_12140 PF00664 ABC transporter transmembrane region NE421_12140 PF00005 ABC transporter NE421_12140 PF03412 Peptidase C39 family NE421_12145 PF02321 Outer membrane efflux protein NE421_12155 PF01389 OmpA-like transmembrane domain NE421_12155 PF00691 OmpA family NE421_12175 PF00691 OmpA family NE421_12175 PF01389 OmpA-like transmembrane domain NE421_12180 PF13018 Extended Signal Peptide of Type V secretion system NE421_12180 PF03895 YadA-like membrane anchor domain NE421_12180 PF05658 Head domain of trimeric autotransporter adhesin NE421_12180 PF05662 Coiled stalk of trimeric autotransporter adhesin NE421_12205 PF01037 Lrp/AsnC ligand binding domain NE421_12210 PF01817 Chorismate mutase type II NE421_12230 PF11940 Domain of unknown function (DUF3458) Ig-like fold NE421_12230 PF17432 Domain of unknown function (DUF3458_C) ARM repeats NE421_12230 PF01433 Peptidase family M1 domain NE421_12245 PF02110 Hydroxyethylthiazole kinase family NE421_12250 PF06445 GyrI-like small molecule binding domain NE421_12260 PF14493 Helix-turn-helix domain NE421_12260 PF05970 PIF1-like helicase NE421_12265 PF00465 Iron-containing alcohol dehydrogenase NE421_12280 PF00171 Aldehyde dehydrogenase family NE421_12285 PF13520 Amino acid permease NE421_12290 PF06751 Ethanolamine ammonia lyase large subunit (EutB) NE421_12295 PF05985 Ethanolamine ammonia-lyase light chain (EutC) NE421_12300 PF02540 NAD synthase NE421_12300 PF00117 Glutamine amidotransferase class-I NE421_12300 PF00958 GMP synthase C terminal domain NE421_12305 PF00749 tRNA synthetases class I (E and Q), catalytic domain NE421_12305 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain NE421_12310 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD NE421_12315 PF00149 Calcineurin-like phosphoesterase NE421_12325 PF00881 Nitroreductase family NE421_12335 PF17209 Hfq protein NE421_12345 PF01119 DNA mismatch repair protein, C-terminal domain NE421_12345 PF08676 MutL C terminal dimerisation domain NE421_12350 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE NE421_12355 PF00849 RNA pseudouridylate synthase NE421_12355 PF01479 S4 domain NE421_12370 PF00849 RNA pseudouridylate synthase NE421_12370 PF01479 S4 domain NE421_12380 PF04284 Protein of unknown function (DUF441) NE421_12385 PF03466 LysR substrate binding domain NE421_12385 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NE421_12505 PF04233 Phage Mu protein F like protein NE421_12510 PF06074 Protein of unknown function (DUF935) NE421_12525 PF03237 Terminase-like family NE421_12600 PF13401 AAA domain NE421_12600 PF01471 Putative peptidoglycan binding domain NE421_12640 PF00216 Bacterial DNA-binding protein NE421_12680 PF07690 Major Facilitator Superfamily NE421_12685 PF00520 Ion transport protein NE421_12685 PF00027 Cyclic nucleotide-binding domain NE421_12695 PF11791 Aconitate B N-terminal domain NE421_12695 PF00330 Aconitase family (aconitate hydratase) NE421_12695 PF06434 Aconitate hydratase 2 N-terminus NE421_12710 PF01103 Surface antigen NE421_12710 PF07244 Surface antigen variable number repeat NE421_12710 PF17243 POTRA domain TamA domain 1 NE421_12715 PF07690 Major Facilitator Superfamily NE421_12720 PF03232 Ubiquinone biosynthesis protein COQ7 NE421_12730 PF00120 Glutamine synthetase, catalytic domain NE421_12735 PF00072 Response regulator receiver domain NE421_12735 PF00486 Transcriptional regulatory protein, C terminal NE421_12740 PF02702 Osmosensitive K+ channel His kinase sensor domain NE421_12740 PF13493 Domain of unknown function (DUF4118) NE421_12740 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NE421_12740 PF00512 His Kinase A (phospho-acceptor) domain NE421_12745 PF02669 K+-transporting ATPase, c chain NE421_12755 PF03814 Potassium-transporting ATPase A subunit NE421_12770 PF03109 ABC1 family NE421_12775 PF00899 ThiF family NE421_12780 PF01613 Flavin reductase like domain NE421_12785 PF00501 AMP-binding enzyme NE421_12785 PF13193 AMP-binding enzyme C-terminal domain NE421_12790 PF00441 Acyl-CoA dehydrogenase, C-terminal domain NE421_12790 PF02770 Acyl-CoA dehydrogenase, middle domain NE421_12790 PF02771 Acyl-CoA dehydrogenase, N-terminal domain NE421_12795 PF00106 short chain dehydrogenase NE421_12800 PF12833 Helix-turn-helix domain NE421_12805 PF13847 Methyltransferase domain NE421_12805 PF17827 PrmC N-terminal domain NE421_12810 PF03462 PCRF domain NE421_12810 PF00472 RF-1 domain NE421_12820 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NE421_12820 PF03466 LysR substrate binding domain NE421_12835 PF00296 Luciferase-like monooxygenase NE421_12845 PF13994 PgaD-like protein NE421_12850 PF00535 Glycosyl transferase family 2 NE421_12855 PF14883 Hypothetical glycosyl hydrolase family 13 NE421_12855 PF01522 Polysaccharide deacetylase NE421_12865 PF03618 Kinase/pyrophosphorylase NE421_12870 PF00391 PEP-utilising enzyme, mobile domain NE421_12870 PF02896 PEP-utilising enzyme, TIM barrel domain NE421_12870 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain NE421_12880 PF00116 Cytochrome C oxidase subunit II, periplasmic domain NE421_12880 PF06481 COX Aromatic Rich Motif NE421_12885 PF00115 Cytochrome C and Quinol oxidase polypeptide I NE421_12890 PF00510 Cytochrome c oxidase subunit III NE421_12895 PF03626 Prokaryotic Cytochrome C oxidase subunit IV NE421_12900 PF01040 UbiA prenyltransferase family NE421_12905 PF01250 Ribosomal protein S6 NE421_12910 PF01084 Ribosomal protein S18 NE421_12915 PF03948 Ribosomal protein L9, C-terminal domain NE421_12915 PF01281 Ribosomal protein L9, N-terminal domain NE421_12920 PF00772 DnaB-like helicase N terminal domain NE421_12920 PF03796 DnaB-like helicase C terminal domain NE421_12925 PF00842 Alanine racemase, C-terminal domain NE421_12925 PF01168 Alanine racemase, N-terminal domain NE421_12935 PF08379 Bacterial transglutaminase-like N-terminal region NE421_12935 PF01841 Transglutaminase-like superfamily NE421_12945 PF14403 Circularly permuted ATP-grasp type 2 NE421_12955 PF13932 GidA associated domain NE421_12955 PF01134 Glucose inhibited division protein A NE421_12975 PF02954 Bacterial regulatory protein, Fis family NE421_12980 PF02142 MGS-like domain NE421_12980 PF01808 AICARFT/IMPCHase bienzyme NE421_12985 PF02843 Phosphoribosylglycinamide synthetase, C domain NE421_12985 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain NE421_12985 PF02844 Phosphoribosylglycinamide synthetase, N domain NE421_12990 PF03180 NLPA lipoprotein NE421_12995 PF09383 NIL domain NE421_12995 PF00005 ABC transporter NE421_13000 PF00528 Binding-protein-dependent transport system inner membrane component NE421_13005 PF00753 Metallo-beta-lactamase superfamily NE421_13005 PF16123 Hydroxyacylglutathione hydrolase C-terminus NE421_13015 PF00375 Sodium:dicarboxylate symporter family NE421_13035 PF07995 Glucose / Sorbosone dehydrogenase NE421_13040 PF00892 EamA-like transporter family NE421_13045 PF01177 Asp/Glu/Hydantoin racemase NE421_13065 PF00486 Transcriptional regulatory protein, C terminal NE421_13065 PF00072 Response regulator receiver domain NE421_13070 PF08521 Two-component sensor kinase N-terminal NE421_13070 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NE421_13070 PF00512 His Kinase A (phospho-acceptor) domain NE421_13110 PF00512 His Kinase A (phospho-acceptor) domain NE421_13110 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NE421_13110 PF00672 HAMP domain NE421_13115 PF00486 Transcriptional regulatory protein, C terminal NE421_13115 PF00072 Response regulator receiver domain NE421_13125 PF00576 HIUase/Transthyretin family NE421_13135 PF02470 MlaD protein NE421_13140 PF04403 Paraquat-inducible protein A NE421_13165 PF00083 Sugar (and other) transporter NE421_13165 PF08946 Osmosensory transporter coiled coil NE421_13215 PF07729 FCD domain NE421_13215 PF00392 Bacterial regulatory proteins, gntR family NE421_13225 PF03616 Sodium/glutamate symporter NE421_13230 PF00561 alpha/beta hydrolase fold NE421_13255 PF04076 Bacterial OB fold (BOF) protein NE421_13285 PF00324 Amino acid permease NE421_13290 PF00171 Aldehyde dehydrogenase family NE421_13295 PF00202 Aminotransferase class-III NE421_13300 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NE421_13300 PF03466 LysR substrate binding domain NE421_13340 PF13018 Extended Signal Peptide of Type V secretion system NE421_13340 PF13332 Hemagglutinin repeat NE421_13340 PF05860 haemagglutination activity domain NE421_13340 PF04829 Pre-toxin domain with VENN motif NE421_13340 PF13018 Extended Signal Peptide of Type V secretion system NE421_13340 PF13332 Hemagglutinin repeat NE421_13340 PF05860 haemagglutination activity domain NE421_13340 PF04829 Pre-toxin domain with VENN motif NE421_13345 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB NE421_13345 PF08479 POTRA domain, ShlB-type NE421_13345 PF17287 POTRA domain NE421_13370 PF00069 Protein kinase domain NE421_13370 PF03793 PASTA domain NE421_13390 PF00814 Glycoprotease family NE421_13395 PF01165 Ribosomal protein S21 NE421_13400 PF09424 Yqey-like protein NE421_13405 PF01435 Peptidase family M48 NE421_13410 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain NE421_13410 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain NE421_13425 PF00156 Phosphoribosyl transferase domain NE421_13430 PF02674 Colicin V production protein NE421_13435 PF01180 Dihydroorotate dehydrogenase NE421_13455 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus NE421_13455 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus NE421_13460 PF00881 Nitroreductase family NE421_13470 PF00270 DEAD/DEAH box helicase NE421_13470 PF00271 Helicase conserved C-terminal domain NE421_13475 PF00313 'Cold-shock' DNA-binding domain NE421_13490 PF00140 Sigma-70 factor, region 1.2 NE421_13490 PF04542 Sigma-70 region 2 NE421_13490 PF04545 Sigma-70, region 4 NE421_13495 PF04241 Protein of unknown function (DUF423) NE421_13505 PF05690 Thiazole biosynthesis protein ThiG NE421_13515 PF03883 Peroxide stress protein YaaA NE421_13525 PF06956 Regulator of RNA terminal phosphate cyclase NE421_13525 PF00158 Sigma-54 interaction domain NE421_13530 PF00753 Metallo-beta-lactamase superfamily NE421_13535 PF01139 tRNA-splicing ligase RtcB NE421_13550 PF05189 RNA 3'-terminal phosphate cyclase (RTC), insert domain NE421_13550 PF01137 RNA 3'-terminal phosphate cyclase NE421_13555 PF07687 Peptidase dimerisation domain NE421_13555 PF01546 Peptidase family M20/M25/M40 NE421_13565 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) NE421_13570 PF01842 ACT domain NE421_13570 PF01817 Chorismate mutase type II NE421_13570 PF00800 Prephenate dehydratase NE421_13575 PF00756 Putative esterase NE421_13580 PF02771 Acyl-CoA dehydrogenase, N-terminal domain NE421_13580 PF00441 Acyl-CoA dehydrogenase, C-terminal domain NE421_13580 PF02770 Acyl-CoA dehydrogenase, middle domain NE421_13585 PF00375 Sodium:dicarboxylate symporter family NE421_13590 PF02885 Glycosyl transferase family, helical bundle domain NE421_13590 PF00591 Glycosyl transferase family, a/b domain NE421_13595 PF07023 Protein of unknown function (DUF1315) NE421_13600 PF01513 ATP-NAD kinase NE421_13605 PF14814 Bifunctional transglycosylase second domain NE421_13605 PF00905 Penicillin binding protein transpeptidase domain NE421_13605 PF00912 Transglycosylase NE421_13615 PF00293 NUDIX domain NE421_13625 PF00512 His Kinase A (phospho-acceptor) domain NE421_13625 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NE421_13625 PF08521 Two-component sensor kinase N-terminal NE421_13630 PF00486 Transcriptional regulatory protein, C terminal NE421_13630 PF00072 Response regulator receiver domain NE421_13640 PF00437 Type II/IV secretion system protein NE421_13640 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain NE421_13650 PF01980 tRNA-methyltransferase O NE421_13650 PF18389 TrmO C-terminal domain NE421_13655 PF00970 Oxidoreductase FAD-binding domain NE421_13655 PF00175 Oxidoreductase NAD-binding domain NE421_13660 PF02567 Phenazine biosynthesis-like protein NE421_13665 PF00155 Aminotransferase class I and II NE421_13665 PF00392 Bacterial regulatory proteins, gntR family NE421_13670 PF01136 Peptidase family U32 NE421_13670 PF16325 Peptidase family U32 C-terminal domain NE421_13675 PF00037 4Fe-4S binding domain NE421_13680 PF00893 Small Multidrug Resistance protein NE421_13685 PF00005 ABC transporter NE421_13690 PF00528 Binding-protein-dependent transport system inner membrane component NE421_13695 PF00528 Binding-protein-dependent transport system inner membrane component NE421_13700 PF00497 Bacterial extracellular solute-binding proteins, family 3 NE421_13705 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NE421_13705 PF03466 LysR substrate binding domain NE421_13710 PF13533 Biotin-lipoyl like NE421_13715 PF00873 AcrB/AcrD/AcrF family NE421_13720 PF02321 Outer membrane efflux protein NE421_13725 PF00464 Serine hydroxymethyltransferase NE421_13755 PF00005 ABC transporter NE421_13760 PF01061 ABC-2 type transporter NE421_13765 PF14489 QueF-like protein NE421_13765 PF14819 Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term NE421_13775 PF01098 Cell cycle protein NE421_13780 PF13406 Transglycosylase SLT domain NE421_13785 PF05036 Sporulation related domain NE421_13785 PF03330 Lytic transglycolase NE421_13805 PF12833 Helix-turn-helix domain NE421_13815 PF00889 Elongation factor TS NE421_13820 PF00318 Ribosomal protein S2 NE421_13825 PF00557 Metallopeptidase family M24 NE421_13835 PF07690 Major Facilitator Superfamily NE421_13845 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain NE421_13845 PF07992 Pyridine nucleotide-disulphide oxidoreductase NE421_13850 PF04055 Radical SAM superfamily NE421_13855 PF00441 Acyl-CoA dehydrogenase, C-terminal domain NE421_13855 PF02771 Acyl-CoA dehydrogenase, N-terminal domain NE421_13855 PF09317 Domain of unknown function (DUF1974) NE421_13870 PF00670 S-adenosyl-L-homocysteine hydrolase, NAD binding domain NE421_13870 PF05221 S-adenosyl-L-homocysteine hydrolase NE421_13875 PF02219 Methylenetetrahydrofolate reductase NE421_13880 PF04452 RNA methyltransferase NE421_13885 PF00990 Diguanylate cyclase, GGDEF domain NE421_13885 PF00563 EAL domain NE421_13885 PF03707 Bacterial signalling protein N terminal repeat NE421_13890 PF00390 Malic enzyme, N-terminal domain NE421_13890 PF03949 Malic enzyme, NAD binding domain NE421_13890 PF01515 Phosphate acetyl/butaryl transferase NE421_13895 PF12627 Probable RNA and SrmB- binding site of polymerase A NE421_13895 PF01743 Poly A polymerase head domain NE421_13900 PF13180 PDZ domain NE421_13905 PF01784 NIF3 (NGG1p interacting factor 3) NE421_13910 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain NE421_13910 PF02777 Iron/manganese superoxide dismutases, C-terminal domain NE421_13945 PF01040 UbiA prenyltransferase family NE421_13950 PF04345 Chorismate lyase NE421_13955 PF03951 Glutamine synthetase, beta-Grasp domain NE421_13955 PF00120 Glutamine synthetase, catalytic domain NE421_13960 PF00854 POT family NE421_13970 PF00117 Glutamine amidotransferase class-I NE421_13975 PF01433 Peptidase family M1 domain NE421_13975 PF11838 ERAP1-like C-terminal domain NE421_13980 PF00593 TonB dependent receptor NE421_13980 PF07715 TonB-dependent Receptor Plug Domain NE421_13985 PF02885 Glycosyl transferase family, helical bundle domain NE421_13985 PF00591 Glycosyl transferase family, a/b domain NE421_13990 PF00218 Indole-3-glycerol phosphate synthase NE421_13995 PF01713 Smr domain NE421_14005 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain NE421_14005 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase NE421_14010 PF01799 [2Fe-2S] binding domain NE421_14010 PF00111 2Fe-2S iron-sulfur cluster binding domain NE421_14015 PF01227 GTP cyclohydrolase I NE421_14020 PF00144 Beta-lactamase NE421_14035 PF05675 Protein of unknown function (DUF817) NE421_14040 PF01208 Uroporphyrinogen decarboxylase (URO-D) NE421_14050 PF00425 chorismate binding enzyme NE421_14055 PF17837 4'-phosphopantetheinyl transferase N-terminal domain NE421_14055 PF01648 4'-phosphopantetheinyl transferase superfamily NE421_14060 PF00975 Thioesterase domain NE421_14065 PF00005 ABC transporter NE421_14070 PF00005 ABC transporter NE421_14080 PF00282 Pyridoxal-dependent decarboxylase conserved domain NE421_14085 PF00857 Isochorismatase family NE421_14085 PF00550 Phosphopantetheine attachment site NE421_14090 PF00501 AMP-binding enzyme NE421_14090 PF13193 AMP-binding enzyme C-terminal domain NE421_14095 PF00550 Phosphopantetheine attachment site NE421_14095 PF00501 AMP-binding enzyme NE421_14095 PF00668 Condensation domain NE421_14100 PF13434 L-lysine 6-monooxygenase (NADPH-requiring) NE421_14105 PF07715 TonB-dependent Receptor Plug Domain NE421_14105 PF00593 TonB dependent receptor NE421_14110 PF01497 Periplasmic binding protein NE421_14115 PF00005 ABC transporter NE421_14120 PF01032 FecCD transport family NE421_14125 PF01032 FecCD transport family NE421_14130 PF00975 Thioesterase domain NE421_14130 PF00501 AMP-binding enzyme NE421_14130 PF13193 AMP-binding enzyme C-terminal domain NE421_14130 PF00668 Condensation domain NE421_14130 PF00550 Phosphopantetheine attachment site NE421_14135 PF00668 Condensation domain NE421_14135 PF13193 AMP-binding enzyme C-terminal domain NE421_14135 PF00501 AMP-binding enzyme NE421_14135 PF00550 Phosphopantetheine attachment site NE421_14145 PF13309 HTH domain NE421_14145 PF08348 YheO-like PAS domain NE421_14150 PF00291 Pyridoxal-phosphate dependent enzyme NE421_14155 PF02678 Pirin NE421_14155 PF17954 Quercetinase C-terminal cupin domain NE421_14170 PF16295 Tetracyclin repressor-like, C-terminal domain NE421_14170 PF00440 Bacterial regulatory proteins, tetR family NE421_14175 PF00440 Bacterial regulatory proteins, tetR family NE421_14180 PF08990 Erythronolide synthase docking NE421_14180 PF08240 Alcohol dehydrogenase GroES-like domain NE421_14180 PF09277 Erythronolide synthase, docking NE421_14180 PF16197 Ketoacyl-synthetase C-terminal extension NE421_14180 PF00109 Beta-ketoacyl synthase, N-terminal domain NE421_14180 PF08659 KR domain NE421_14180 PF00550 Phosphopantetheine attachment site NE421_14180 PF14765 Polyketide synthase dehydratase NE421_14180 PF00698 Acyl transferase domain NE421_14180 PF02801 Beta-ketoacyl synthase, C-terminal domain NE421_14185 PF13378 Enolase C-terminal domain-like NE421_14185 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain NE421_14190 PF02604 Antitoxin Phd_YefM, type II toxin-antitoxin system NE421_14200 PF00892 EamA-like transporter family NE421_14220 PF01266 FAD dependent oxidoreductase NE421_14220 PF05430 S-adenosyl-L-methionine-dependent methyltransferase NE421_14225 PF07992 Pyridine nucleotide-disulphide oxidoreductase NE421_14225 PF18113 Rubredoxin binding C-terminal domain NE421_14235 PF00171 Aldehyde dehydrogenase family NE421_14240 PF00848 Ring hydroxylating alpha subunit (catalytic domain) NE421_14240 PF00355 Rieske [2Fe-2S] domain NE421_14245 PF02028 BCCT, betaine/carnitine/choline family transporter NE421_14250 PF02028 BCCT, betaine/carnitine/choline family transporter NE421_14255 PF03466 LysR substrate binding domain NE421_14255 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NE421_14265 PF04328 Selenoprotein, putative NE421_14270 PF13722 5TM C-terminal transporter carbon starvation CstA NE421_14270 PF02554 Carbon starvation protein CstA NE421_14275 PF01132 Elongation factor P (EF-P) OB domain NE421_14275 PF09285 Elongation factor P, C-terminal NE421_14275 PF08207 Elongation factor P (EF-P) KOW-like domain NE421_14280 PF04055 Radical SAM superfamily NE421_14290 PF12792 CSS motif domain associated with EAL NE421_14290 PF00563 EAL domain NE421_14295 PF01197 Ribosomal protein L31 NE421_14300 PF13593 SBF-like CPA transporter family (DUF4137) NE421_14305 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily NE421_14310 PF07690 Major Facilitator Superfamily NE421_14315 PF13654 AAA domain NE421_14315 PF05362 Lon protease (S16) C-terminal proteolytic domain NE421_14320 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NE421_14320 PF03466 LysR substrate binding domain NE421_14325 PF01476 LysM domain NE421_14325 PF01551 Peptidase family M23 NE421_14330 PF01975 Survival protein SurE NE421_14345 PF00768 D-alanyl-D-alanine carboxypeptidase NE421_14345 PF07943 Penicillin-binding protein 5, C-terminal domain NE421_14350 PF00132 Bacterial transferase hexapeptide (six repeats) NE421_14355 PF13344 Haloacid dehalogenase-like hydrolase NE421_14355 PF00293 NUDIX domain NE421_14365 PF04356 Protein of unknown function (DUF489) NE421_14370 PF08328 Adenylosuccinate lyase C-terminal NE421_14370 PF00206 Lyase NE421_14385 PF01343 Peptidase family S49 NE421_14385 PF08496 Peptidase family S49 N-terminal NE421_14390 PF00005 ABC transporter NE421_14395 PF00528 Binding-protein-dependent transport system inner membrane component NE421_14400 PF00528 Binding-protein-dependent transport system inner membrane component NE421_14405 PF12849 PBP superfamily domain NE421_14410 PF00324 Amino acid permease NE421_14415 PF00205 Thiamine pyrophosphate enzyme, central domain NE421_14415 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain NE421_14415 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain NE421_14420 PF01037 Lrp/AsnC ligand binding domain NE421_14425 PF00171 Aldehyde dehydrogenase family NE421_14430 PF00282 Pyridoxal-dependent decarboxylase conserved domain NE421_14435 PF00202 Aminotransferase class-III NE421_14445 PF17754 MftR C-terminal domain NE421_14445 PF00440 Bacterial regulatory proteins, tetR family NE421_14455 PF00487 Fatty acid desaturase NE421_14460 PF00970 Oxidoreductase FAD-binding domain NE421_14460 PF00111 2Fe-2S iron-sulfur cluster binding domain NE421_14460 PF00175 Oxidoreductase NAD-binding domain NE421_14465 PF00440 Bacterial regulatory proteins, tetR family NE421_14475 PF00176 SNF2 family N-terminal domain NE421_14475 PF18339 RapA N-terminal Tudor like domain 1 NE421_14475 PF18337 RapA N-terminal Tudor like domain NE421_14475 PF00271 Helicase conserved C-terminal domain NE421_14475 PF12137 RNA polymerase recycling family C-terminal NE421_14480 PF00849 RNA pseudouridylate synthase NE421_14490 PF00202 Aminotransferase class-III NE421_14495 PF02581 Thiamine monophosphate synthase NE421_14505 PF09615 CRISPR-associated protein (Cas_Csy3) NE421_14510 PF09614 CRISPR-associated protein (Cas_Csy2) NE421_14515 PF09611 CRISPR-associated protein (Cas_Csy1) NE421_14525 PF01867 CRISPR associated protein Cas1 NE421_14550 PF05193 Peptidase M16 inactive domain NE421_14550 PF00675 Insulinase (Peptidase family M16) NE421_14555 PF02567 Phenazine biosynthesis-like protein NE421_14560 PF00375 Sodium:dicarboxylate symporter family NE421_14565 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NE421_14565 PF03466 LysR substrate binding domain NE421_14570 PF06779 Uncharacterised MFS-type transporter YbfB NE421_14585 PF00180 Isocitrate/isopropylmalate dehydrogenase NE421_14590 PF00849 RNA pseudouridylate synthase NE421_14595 PF03971 Monomeric isocitrate dehydrogenase NE421_14605 PF00768 D-alanyl-D-alanine carboxypeptidase NE421_14605 PF07943 Penicillin-binding protein 5, C-terminal domain NE421_14610 PF07992 Pyridine nucleotide-disulphide oxidoreductase NE421_14615 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase NE421_14620 PF03441 FAD binding domain of DNA photolyase NE421_14620 PF00875 DNA photolyase NE421_14650 PF02350 UDP-N-acetylglucosamine 2-epimerase NE421_14665 PF03060 Nitronate monooxygenase NE421_14670 PF01207 Dihydrouridine synthase (Dus) NE421_14675 PF07759 Protein of unknown function (DUF1615) NE421_14685 PF00696 Amino acid kinase family NE421_14685 PF01472 PUA domain NE421_14690 PF01018 GTP1/OBG NE421_14690 PF01926 50S ribosome-binding GTPase NE421_14705 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain NE421_14705 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain NE421_14710 PF00892 EamA-like transporter family NE421_14720 PF00271 Helicase conserved C-terminal domain NE421_14720 PF04851 Type III restriction enzyme, res subunit NE421_14720 PF02151 UvrB/uvrC motif NE421_14720 PF12344 Ultra-violet resistance protein B NE421_14720 PF17757 UvrB interaction domain NE421_14730 PF17151 Periplasmic sensor domain NE421_14730 PF00990 Diguanylate cyclase, GGDEF domain NE421_14740 PF00155 Aminotransferase class I and II NE421_14770 PF00106 short chain dehydrogenase NE421_14775 PF06175 tRNA-(MS[2]IO[6]A)-hydroxylase (MiaE) NE421_14780 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ NE421_14785 PF11967 Recombination protein O N terminal NE421_14785 PF02565 Recombination protein O C terminal NE421_14795 PF07650 KH domain NE421_14795 PF01926 50S ribosome-binding GTPase NE421_14800 PF00035 Double-stranded RNA binding motif NE421_14800 PF14622 Ribonuclease-III-like NE421_14810 PF10502 Signal peptidase, peptidase S26 NE421_14815 PF06421 GTP-binding protein LepA C-terminus NE421_14815 PF00009 Elongation factor Tu GTP binding domain NE421_14815 PF00679 Elongation factor G C-terminus NE421_14815 PF03144 Elongation factor Tu domain 2 NE421_14820 PF13302 Acetyltransferase (GNAT) domain NE421_14830 PF13180 PDZ domain NE421_14835 PF00890 FAD binding domain NE421_14835 PF02910 Fumarate reductase flavoprotein C-term NE421_14845 PF02223 Thymidylate kinase NE421_14850 PF02618 YceG-like family NE421_14855 PF01063 Amino-transferase class IV NE421_14870 PF00528 Binding-protein-dependent transport system inner membrane component NE421_14875 PF00528 Binding-protein-dependent transport system inner membrane component NE421_14880 PF00005 ABC transporter NE421_14880 PF12857 TOBE-like domain NE421_14895 PF00132 Bacterial transferase hexapeptide (six repeats) NE421_14895 PF14602 Hexapeptide repeat of succinyl-transferase NE421_14895 PF14805 Tetrahydrodipicolinate N-succinyltransferase N-terminal NE421_14905 PF06508 Queuosine biosynthesis protein QueC NE421_14920 PF00578 AhpC/TSA family NE421_14930 PF01467 Cytidylyltransferase-like NE421_14930 PF00293 NUDIX domain NE421_14935 PF00378 Enoyl-CoA hydratase/isomerase NE421_14940 PF01784 NIF3 (NGG1p interacting factor 3) NE421_14950 PF07690 Major Facilitator Superfamily NE421_14955 PF02769 AIR synthase related protein, C-terminal domain NE421_14955 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain NE421_14955 PF18076 Formylglycinamide ribonucleotide amidotransferase N-terminal NE421_14960 PF01966 HD domain NE421_14965 PF07499 RuvA, C-terminal domain NE421_14965 PF01330 RuvA N terminal domain NE421_14970 PF17864 RuvB AAA lid domain NE421_14970 PF05496 Holliday junction DNA helicase RuvB P-loop domain NE421_14970 PF05491 RuvB C-terminal winged helix domain NE421_14975 PF01546 Peptidase family M20/M25/M40 NE421_14975 PF07687 Peptidase dimerisation domain NE421_14980 PF03061 Thioesterase superfamily NE421_14985 PF01618 MotA/TolQ/ExbB proton channel family NE421_14990 PF02472 Biopolymer transport protein ExbD/TolR NE421_15000 PF07676 WD40-like Beta Propeller Repeat NE421_15000 PF04052 TolB amino-terminal domain NE421_15005 PF00691 OmpA family NE421_15015 PF00316 Fructose-1-6-bisphosphatase, N-terminal domain NE421_15020 PF00588 SpoU rRNA Methylase family NE421_15020 PF08032 RNA 2'-O ribose methyltransferase substrate binding NE421_15050 PF11638 DnaA N-terminal domain NE421_15050 PF00308 Bacterial dnaA protein NE421_15050 PF08299 Bacterial dnaA protein helix-turn-helix NE421_15055 PF01594 AI-2E family transporter NE421_15060 PF00586 AIR synthase related protein, N-terminal domain NE421_15060 PF02769 AIR synthase related protein, C-terminal domain NE421_15065 PF00551 Formyl transferase NE421_15070 PF12697 Alpha/beta hydrolase family NE421_15075 PF06965 Na+/H+ antiporter 1 NE421_15075 PF01343 Peptidase family S49 NE421_15085 PF03772 Competence protein NE421_15085 PF13567 Domain of unknown function (DUF4131) NE421_15085 PF00753 Metallo-beta-lactamase superfamily NE421_15090 PF00005 ABC transporter NE421_15095 PF02687 FtsX-like permease family NE421_15095 PF12704 MacB-like periplasmic core domain NE421_15105 PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 NE421_15120 PF00266 Aminotransferase class-V NE421_15130 PF13533 Biotin-lipoyl like NE421_15150 PF00535 Glycosyl transferase family 2 NE421_15165 PF00521 DNA gyrase/topoisomerase IV, subunit A NE421_15165 PF03989 DNA gyrase C-terminal domain, beta-propeller NE421_15170 PF00766 Electron transfer flavoprotein FAD-binding domain NE421_15170 PF01012 Electron transfer flavoprotein domain NE421_15175 PF01012 Electron transfer flavoprotein domain NE421_15180 PF00589 Phage integrase family NE421_15180 PF02899 Phage integrase, N-terminal SAM-like domain NE421_15185 PF01810 LysE type translocator NE421_15190 PF01678 Diaminopimelate epimerase NE421_15195 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain NE421_15195 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain NE421_15205 PF00324 Amino acid permease NE421_15210 PF18073 Rubredoxin metal binding domain NE421_15220 PF00152 tRNA synthetases class II (D, K and N) NE421_15225 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain NE421_15225 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain NE421_15225 PF11890 Domain of unknown function (DUF3410) NE421_15230 PF06803 Protein of unknown function (DUF1232) NE421_15235 PF02634 FdhD/NarQ family NE421_15240 PF00384 Molybdopterin oxidoreductase NE421_15245 PF02595 Glycerate kinase family NE421_15260 PF00881 Nitroreductase family NE421_15280 PF09857 Putative toxin of bacterial toxin-antitoxin pair NE421_15290 PF13193 AMP-binding enzyme C-terminal domain NE421_15290 PF00668 Condensation domain NE421_15290 PF00501 AMP-binding enzyme NE421_15290 PF00975 Thioesterase domain NE421_15290 PF00550 Phosphopantetheine attachment site NE421_15300 PF00589 Phage integrase family NE421_15300 PF13356 Arm DNA-binding domain NE421_15315 PF12697 Alpha/beta hydrolase family NE421_15320 PF00881 Nitroreductase family NE421_15325 PF00296 Luciferase-like monooxygenase NE421_15330 PF00857 Isochorismatase family NE421_15335 PF01042 Endoribonuclease L-PSP NE421_15340 PF01613 Flavin reductase like domain NE421_15345 PF00860 Permease family NE421_15350 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase NE421_15350 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase NE421_15370 PF13737 Transposase DDE domain NE421_15385 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NE421_15385 PF03466 LysR substrate binding domain NE421_15395 PF01042 Endoribonuclease L-PSP NE421_15415 PF01925 Sulfite exporter TauE/SafE NE421_15425 PF01645 Conserved region in glutamate synthase NE421_15430 PF01493 GXGXG motif NE421_15440 PF00120 Glutamine synthetase, catalytic domain NE421_15450 PF00909 Ammonium Transporter Family NE421_15460 PF01571 Aminomethyltransferase folate-binding domain NE421_15460 PF17806 Sarcosine oxidase A3 domain NE421_15460 PF07992 Pyridine nucleotide-disulphide oxidoreductase NE421_15460 PF08669 Glycine cleavage T-protein C-terminal barrel domain NE421_15465 PF04267 Sarcosine oxidase, delta subunit family NE421_15470 PF01266 FAD dependent oxidoreductase NE421_15475 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain NE421_15475 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain NE421_15480 PF00551 Formyl transferase NE421_15490 PF00543 Nitrogen regulatory protein P-II NE421_15495 PF01571 Aminomethyltransferase folate-binding domain NE421_15495 PF08669 Glycine cleavage T-protein C-terminal barrel domain NE421_15505 PF00111 2Fe-2S iron-sulfur cluster binding domain NE421_15505 PF00970 Oxidoreductase FAD-binding domain NE421_15505 PF00175 Oxidoreductase NAD-binding domain NE421_15525 PF00072 Response regulator receiver domain NE421_15525 PF00196 Bacterial regulatory proteins, luxR family NE421_15530 PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term NE421_15530 PF07730 Histidine kinase NE421_15530 PF00672 HAMP domain NE421_15530 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NE421_15535 PF01571 Aminomethyltransferase folate-binding domain NE421_15535 PF08669 Glycine cleavage T-protein C-terminal barrel domain NE421_15540 PF00909 Ammonium Transporter Family NE421_15545 PF00893 Small Multidrug Resistance protein NE421_15585 PF03600 Citrate transporter NE421_15590 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NE421_15590 PF03466 LysR substrate binding domain NE421_15600 PF01272 Transcription elongation factor, GreA/GreB, C-term NE421_15600 PF03449 Transcription elongation factor, N-terminal NE421_15605 PF00497 Bacterial extracellular solute-binding proteins, family 3 NE421_15605 PF01464 Transglycosylase SLT domain NE421_15615 PF01171 PP-loop family NE421_15620 PF01464 Transglycosylase SLT domain NE421_15625 PF01435 Peptidase family M48 NE421_15635 PF00873 AcrB/AcrD/AcrF family NE421_15640 PF03009 Glycerophosphoryl diester phosphodiesterase family NE421_15645 PF00753 Metallo-beta-lactamase superfamily NE421_15650 PF01219 Prokaryotic diacylglycerol kinase NE421_15655 PF00118 TCP-1/cpn60 chaperonin family NE421_15660 PF00166 Chaperonin 10 Kd subunit NE421_15665 PF00149 Calcineurin-like phosphoesterase NE421_15670 PF00781 Diacylglycerol kinase catalytic domain NE421_15675 PF17297 Phosphoenolpyruvate carboxykinase N-terminal domain NE421_15675 PF00821 Phosphoenolpyruvate carboxykinase C-terminal P-loop domain NE421_15680 PF01266 FAD dependent oxidoreductase NE421_15680 PF16901 C-terminal domain of alpha-glycerophosphate oxidase NE421_15685 PF00370 FGGY family of carbohydrate kinases, N-terminal domain NE421_15685 PF02782 FGGY family of carbohydrate kinases, C-terminal domain NE421_15690 PF00083 Sugar (and other) transporter NE421_15705 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain NE421_15705 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain NE421_15720 PF16655 PhoD-like phosphatase, N-terminal domain NE421_15720 PF09423 PhoD-like phosphatase NE421_15740 PF00809 Pterin binding enzyme NE421_15745 PF01434 Peptidase family M41 NE421_15745 PF00004 ATPase family associated with various cellular activities (AAA) NE421_15745 PF17862 AAA+ lid domain NE421_15745 PF06480 FtsH Extracellular NE421_15750 PF01728 FtsJ-like methyltransferase NE421_15755 PF01985 CRS1 / YhbY (CRM) domain NE421_15770 PF00117 Glutamine amidotransferase class-I NE421_15770 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain NE421_15775 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain NE421_15775 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain NE421_15775 PF02142 MGS-like domain NE421_15780 PF01272 Transcription elongation factor, GreA/GreB, C-term NE421_15780 PF03449 Transcription elongation factor, N-terminal NE421_15785 PF00132 Bacterial transferase hexapeptide (six repeats) NE421_15790 PF00582 Universal stress protein family NE421_15795 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain NE421_15805 PF09587 Bacterial capsule synthesis protein PGA_cap NE421_15820 PF00999 Sodium/hydrogen exchanger family NE421_15825 PF04228 Putative neutral zinc metallopeptidase NE421_15830 PF05661 Protein of unknown function (DUF808) NE421_15835 PF00579 tRNA synthetases class I (W and Y) NE421_15840 PF02629 CoA binding domain NE421_15840 PF00549 CoA-ligase NE421_15845 PF00549 CoA-ligase NE421_15845 PF08442 ATP-grasp domain NE421_15850 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain NE421_15850 PF07992 Pyridine nucleotide-disulphide oxidoreductase NE421_15855 PF00364 Biotin-requiring enzyme NE421_15855 PF02817 e3 binding domain NE421_15855 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) NE421_15860 PF16078 2-oxoglutarate dehydrogenase N-terminus NE421_15860 PF00676 Dehydrogenase E1 component NE421_15860 PF16870 2-oxoglutarate dehydrogenase C-terminal NE421_15860 PF02779 Transketolase, pyrimidine binding domain NE421_15875 PF13085 2Fe-2S iron-sulfur cluster binding domain NE421_15880 PF00890 FAD binding domain NE421_15880 PF02910 Fumarate reductase flavoprotein C-term NE421_15885 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit NE421_15890 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit NE421_15895 PF00285 Citrate synthase, C-terminal domain NE421_15905 PF00581 Rhodanese-like domain NE421_15905 PF17773 UPF0176 acylphosphatase like domain NE421_15920 PF04546 Sigma-70, non-essential region NE421_15920 PF03979 Sigma-70 factor, region 1.1 NE421_15920 PF04542 Sigma-70 region 2 NE421_15920 PF04545 Sigma-70, region 4 NE421_15920 PF04539 Sigma-70 region 3 NE421_15920 PF00140 Sigma-70 factor, region 1.2 NE421_15925 PF04359 Protein of unknown function (DUF493) NE421_15930 PF03099 Biotin/lipoate A/B protein ligase family NE421_15940 PF00465 Iron-containing alcohol dehydrogenase NE421_15945 PF13520 Amino acid permease NE421_15950 PF03358 NADPH-dependent FMN reductase NE421_15955 PF01638 HxlR-like helix-turn-helix NE421_15960 PF00588 SpoU rRNA Methylase family NE421_15965 PF10414 Sirohaem synthase dimerisation region NE421_15965 PF14824 Sirohaem biosynthesis protein central NE421_15965 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases NE421_15970 PF02403 Seryl-tRNA synthetase N-terminal domain NE421_15970 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) NE421_15980 PF03548 Outer membrane lipoprotein carrier protein LolA NE421_15985 PF01016 Ribosomal L27 protein NE421_15990 PF00829 Ribosomal prokaryotic L21 protein NE421_16000 PF00348 Polyprenyl synthetase NE421_16010 PF01569 PAP2 superfamily NE421_16015 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion NE421_16015 PF00529 HlyD membrane-fusion protein of T1SS NE421_16020 PF00873 AcrB/AcrD/AcrF family NE421_16025 PF02321 Outer membrane efflux protein NE421_16030 PF01906 Putative heavy-metal-binding NE421_16035 PF01906 Putative heavy-metal-binding NE421_16055 PF10458 Valyl tRNA synthetase tRNA binding arm NE421_16055 PF00133 tRNA synthetases class I (I, L, M and V) NE421_16055 PF08264 Anticodon-binding domain of tRNA NE421_16075 PF03466 LysR substrate binding domain NE421_16075 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NE421_16080 PF00909 Ammonium Transporter Family NE421_16090 PF08521 Two-component sensor kinase N-terminal NE421_16090 PF00512 His Kinase A (phospho-acceptor) domain NE421_16090 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NE421_16095 PF00486 Transcriptional regulatory protein, C terminal NE421_16095 PF00072 Response regulator receiver domain NE421_16100 PF00884 Sulfatase NE421_16100 PF08019 Phosphoethanolamine transferase EptA/EptB NE421_16120 PF01734 Patatin-like phospholipase NE421_16130 PF01145 SPFH domain / Band 7 family NE421_16135 PF04237 YjbR NE421_16140 PF00348 Polyprenyl synthetase NE421_16145 PF04303 PrpF protein NE421_16150 PF00324 Amino acid permease NE421_16160 PF01965 DJ-1/PfpI family NE421_16165 PF09277 Erythronolide synthase, docking NE421_16165 PF08240 Alcohol dehydrogenase GroES-like domain NE421_16165 PF08990 Erythronolide synthase docking NE421_16165 PF16197 Ketoacyl-synthetase C-terminal extension NE421_16165 PF00109 Beta-ketoacyl synthase, N-terminal domain NE421_16165 PF02801 Beta-ketoacyl synthase, C-terminal domain NE421_16165 PF08659 KR domain NE421_16165 PF00550 Phosphopantetheine attachment site NE421_16165 PF14765 Polyketide synthase dehydratase NE421_16165 PF00698 Acyl transferase domain NE421_16170 PF06719 AraC-type transcriptional regulator N-terminus NE421_16170 PF12833 Helix-turn-helix domain NE421_16175 PF02673 Bacitracin resistance protein BacA NE421_16195 PF02525 Flavodoxin-like fold NE421_16210 PF01507 Phosphoadenosine phosphosulfate reductase family NE421_16215 PF03007 Wax ester synthase-like Acyl-CoA acyltransferase domain NE421_16215 PF06974 Protein of unknown function (DUF1298) NE421_16225 PF10150 Ribonuclease E/G family NE421_16225 PF00575 S1 RNA binding domain NE421_16230 PF02545 Maf-like protein NE421_16235 PF04093 rod shape-determining protein MreD NE421_16240 PF04085 rod shape-determining protein MreC NE421_16250 PF02686 Glu-tRNAGln amidotransferase C subunit NE421_16255 PF01425 Amidase NE421_16260 PF02934 GatB/GatE catalytic domain NE421_16260 PF02637 GatB domain NE421_16290 PF01431 Peptidase family M13 NE421_16290 PF05649 Peptidase family M13 NE421_16295 PF05992 SbmA/BacA-like family NE421_16300 PF13291 ACT domain NE421_16300 PF00291 Pyridoxal-phosphate dependent enzyme NE421_16305 PF01734 Patatin-like phospholipase NE421_16310 PF01235 Sodium:alanine symporter family NE421_16325 PF00881 Nitroreductase family NE421_16330 PF07690 Major Facilitator Superfamily NE421_16335 PF12805 FUSC-like inner membrane protein yccS NE421_16345 PF00667 FAD binding domain NE421_16345 PF00258 Flavodoxin NE421_16345 PF00175 Oxidoreductase NAD-binding domain NE421_16385 PF17969 L,D-transpeptidase C-terminal domain NE421_16385 PF03734 L,D-transpeptidase catalytic domain NE421_16390 PF04304 Protein of unknown function (DUF454) NE421_16400 PF08085 Entericidin EcnA/B family NE421_16405 PF07687 Peptidase dimerisation domain NE421_16405 PF01546 Peptidase family M20/M25/M40 NE421_16415 PF01627 Hpt domain NE421_16415 PF00072 Response regulator receiver domain NE421_16415 PF01584 CheW-like domain NE421_16415 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NE421_16420 PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term NE421_16420 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain NE421_16425 PF01584 CheW-like domain NE421_16430 PF00072 Response regulator receiver domain NE421_16435 PF00072 Response regulator receiver domain NE421_16450 PF00873 AcrB/AcrD/AcrF family NE421_16455 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) NE421_16455 PF03129 Anticodon binding domain NE421_16455 PF04073 Aminoacyl-tRNA editing domain NE421_16460 PF07411 Domain of unknown function (DUF1508) NE421_16465 PF03831 PhnA domain NE421_16465 PF08274 PhnA Zinc-Ribbon NE421_16470 PF04343 Protein of unknown function, DUF488 NE421_16480 PF01571 Aminomethyltransferase folate-binding domain NE421_16485 PF10411 Disulfide bond isomerase protein N-terminus NE421_16485 PF13098 Thioredoxin-like domain NE421_16495 PF03547 Membrane transport protein NE421_16500 PF00724 NADH:flavin oxidoreductase / NADH oxidase family NE421_16505 PF00593 TonB dependent receptor NE421_16505 PF07715 TonB-dependent Receptor Plug Domain NE421_16510 PF02245 Methylpurine-DNA glycosylase (MPG) NE421_16515 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain NE421_16515 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain NE421_16515 PF06827 Zinc finger found in FPG and IleRS NE421_16530 PF01741 Large-conductance mechanosensitive channel, MscL NE421_16535 PF00009 Elongation factor Tu GTP binding domain NE421_16535 PF03144 Elongation factor Tu domain 2 NE421_16535 PF00679 Elongation factor G C-terminus NE421_16540 PF00860 Permease family NE421_16545 PF05175 Methyltransferase small domain NE421_16545 PF08468 Methyltransferase small domain N-terminal NE421_16550 PF00324 Amino acid permease NE421_16555 PF01139 tRNA-splicing ligase RtcB NE421_16565 PF00691 OmpA family NE421_16565 PF13505 Outer membrane protein beta-barrel domain NE421_16575 PF02803 Thiolase, C-terminal domain NE421_16575 PF00108 Thiolase, N-terminal domain NE421_16585 PF00893 Small Multidrug Resistance protein NE421_16595 PF01077 Nitrite and sulphite reductase 4Fe-4S domain NE421_16595 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain NE421_16600 PF01011 PQQ enzyme repeat NE421_16605 PF04966 Carbohydrate-selective porin, OprB family NE421_16610 PF02515 CoA-transferase family III NE421_16615 PF12833 Helix-turn-helix domain NE421_16615 PF02311 AraC-like ligand binding domain NE421_16620 PF02803 Thiolase, C-terminal domain NE421_16620 PF00108 Thiolase, N-terminal domain NE421_16625 PF00378 Enoyl-CoA hydratase/isomerase NE421_16625 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain NE421_16625 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain NE421_16650 PF03006 Haemolysin-III related NE421_16655 PF07690 Major Facilitator Superfamily NE421_16655 PF00083 Sugar (and other) transporter NE421_16665 PF02810 SEC-C motif NE421_16665 PF07517 SecA DEAD-like domain NE421_16665 PF01043 SecA preprotein cross-linking domain NE421_16665 PF07516 SecA Wing and Scaffold domain NE421_16670 PF10417 C-terminal domain of 1-Cys peroxiredoxin NE421_16670 PF00578 AhpC/TSA family NE421_16675 PF00753 Metallo-beta-lactamase superfamily NE421_16690 PF08245 Mur ligase middle domain NE421_16690 PF02875 Mur ligase family, glutamate ligase domain NE421_16695 PF01039 Carboxyl transferase domain NE421_16700 PF00290 Tryptophan synthase alpha chain NE421_16725 PF00291 Pyridoxal-phosphate dependent enzyme NE421_16730 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase NE421_16735 PF00593 TonB dependent receptor NE421_16735 PF07715 TonB-dependent Receptor Plug Domain NE421_16740 PF01923 Cobalamin adenosyltransferase NE421_16760 PF02696 Uncharacterized ACR, YdiU/UPF0061 family NE421_16765 PF00072 Response regulator receiver domain NE421_16765 PF00486 Transcriptional regulatory protein, C terminal NE421_16770 PF00672 HAMP domain NE421_16770 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NE421_16770 PF00512 His Kinase A (phospho-acceptor) domain NE421_16780 PF02770 Acyl-CoA dehydrogenase, middle domain NE421_16780 PF02771 Acyl-CoA dehydrogenase, N-terminal domain NE421_16780 PF12806 Acetyl-CoA dehydrogenase C-terminal like NE421_16780 PF00441 Acyl-CoA dehydrogenase, C-terminal domain NE421_16785 PF02771 Acyl-CoA dehydrogenase, N-terminal domain NE421_16785 PF00441 Acyl-CoA dehydrogenase, C-terminal domain NE421_16785 PF12806 Acetyl-CoA dehydrogenase C-terminal like NE421_16785 PF02770 Acyl-CoA dehydrogenase, middle domain NE421_16790 PF06146 Phosphate-starvation-inducible E NE421_16810 PF00593 TonB dependent receptor NE421_16810 PF07715 TonB-dependent Receptor Plug Domain NE421_16820 PF00152 tRNA synthetases class II (D, K and N) NE421_16820 PF02938 GAD domain NE421_16820 PF01336 OB-fold nucleic acid binding domain NE421_16835 PF00535 Glycosyl transferase family 2 NE421_16840 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase NE421_16845 PF00483 Nucleotidyl transferase NE421_16850 PF04321 RmlD substrate binding domain NE421_16855 PF16363 GDP-mannose 4,6 dehydratase NE421_16870 PF01522 Polysaccharide deacetylase NE421_16880 PF01063 Amino-transferase class IV NE421_16885 PF08335 GlnD PII-uridylyltransferase NE421_16885 PF03710 Glutamate-ammonia ligase adenylyltransferase NE421_16890 PF07689 KaiB domain NE421_16890 PF00512 His Kinase A (phospho-acceptor) domain NE421_16890 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NE421_16900 PF02547 Queuosine biosynthesis protein NE421_16920 PF01702 Queuine tRNA-ribosyltransferase NE421_16925 PF02699 Preprotein translocase subunit NE421_16930 PF07549 SecD/SecF GG Motif NE421_16930 PF13721 SecD export protein N-terminal TM region NE421_16930 PF02355 Protein export membrane protein NE421_16935 PF07549 SecD/SecF GG Motif NE421_16935 PF02355 Protein export membrane protein NE421_16940 PF04127 DNA / pantothenate metabolism flavoprotein NE421_16940 PF02441 Flavoprotein NE421_16945 PF04002 RadC-like JAB domain NE421_16950 PF01062 Bestrophin, RFP-TM, chloride channel NE421_16955 PF02811 PHP domain NE421_16960 PF04279 Intracellular septation protein A NE421_16965 PF03795 YCII-related domain NE421_16975 PF05430 S-adenosyl-L-methionine-dependent methyltransferase NE421_16975 PF01266 FAD dependent oxidoreductase NE421_16985 PF04461 Protein of unknown function (DUF520) NE421_16995 PF03061 Thioesterase superfamily NE421_17000 PF00085 Thioredoxin NE421_17005 PF00561 alpha/beta hydrolase fold NE421_17010 PF04273 Putative phosphatase (DUF442) NE421_17010 PF00753 Metallo-beta-lactamase superfamily NE421_17020 PF07992 Pyridine nucleotide-disulphide oxidoreductase NE421_17020 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain NE421_17055 PF17152 Periplasmic sensor domain NE421_17055 PF00990 Diguanylate cyclase, GGDEF domain NE421_17060 PF00691 OmpA family NE421_17060 PF01389 OmpA-like transmembrane domain NE421_17065 PF10518 TAT (twin-arginine translocation) pathway signal sequence NE421_17065 PF00149 Calcineurin-like phosphoesterase NE421_17070 PF13091 PLD-like domain NE421_17080 PF01926 50S ribosome-binding GTPase NE421_17080 PF16360 GTP-binding GTPase Middle Region NE421_17080 PF13167 GTP-binding GTPase N-terminal NE421_17100 PF00149 Calcineurin-like phosphoesterase NE421_17105 PF00398 Ribosomal RNA adenine dimethylase NE421_17110 PF04166 Pyridoxal phosphate biosynthetic protein PdxA NE421_17115 PF00572 Ribosomal protein L13 NE421_17120 PF00380 Ribosomal protein S9/S16 NE421_17125 PF13417 Glutathione S-transferase, N-terminal domain NE421_17125 PF00043 Glutathione S-transferase, C-terminal domain NE421_17130 PF04386 Stringent starvation protein B NE421_17140 PF02785 Biotin carboxylase C-terminal domain NE421_17140 PF00289 Biotin carboxylase, N-terminal domain NE421_17140 PF00364 Biotin-requiring enzyme NE421_17140 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain NE421_17150 PF00441 Acyl-CoA dehydrogenase, C-terminal domain NE421_17150 PF02771 Acyl-CoA dehydrogenase, N-terminal domain NE421_17150 PF02770 Acyl-CoA dehydrogenase, middle domain NE421_17155 PF01039 Carboxyl transferase domain NE421_17170 PF17932 Tetracyclin repressor-like, C-terminal domain NE421_17170 PF00440 Bacterial regulatory proteins, tetR family NE421_17175 PF00441 Acyl-CoA dehydrogenase, C-terminal domain NE421_17175 PF02770 Acyl-CoA dehydrogenase, middle domain NE421_17175 PF02771 Acyl-CoA dehydrogenase, N-terminal domain NE421_17220 PF01066 CDP-alcohol phosphatidyltransferase NE421_17225 PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ NE421_17245 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain NE421_17245 PF00056 lactate/malate dehydrogenase, NAD binding domain NE421_17255 PF01551 Peptidase family M23 NE421_17255 PF10145 Phage-related minor tail protein NE421_17255 PF01464 Transglycosylase SLT domain NE421_17260 PF04055 Radical SAM superfamily NE421_17260 PF01938 TRAM domain NE421_17260 PF00919 Uncharacterized protein family UPF0004 NE421_17265 PF02562 PhoH-like protein NE421_17270 PF02130 Uncharacterized protein family UPF0054 NE421_17295 PF03358 NADPH-dependent FMN reductase NE421_17300 PF03631 Virulence factor BrkB NE421_17305 PF00892 EamA-like transporter family NE421_17310 PF12833 Helix-turn-helix domain NE421_17315 PF01557 Fumarylacetoacetate (FAA) hydrolase family NE421_17360 PF17876 Cold shock domain NE421_17360 PF08461 Ribonuclease R winged-helix domain NE421_17360 PF08206 Ribonuclease B OB domain NE421_17360 PF00773 RNB domain NE421_17360 PF00575 S1 RNA binding domain NE421_17365 PF01432 Peptidase family M3 NE421_17370 PF09526 Probable metal-binding protein (DUF2387) NE421_17400 PF03937 Flavinator of succinate dehydrogenase NE421_17405 PF02771 Acyl-CoA dehydrogenase, N-terminal domain NE421_17405 PF02770 Acyl-CoA dehydrogenase, middle domain NE421_17405 PF00441 Acyl-CoA dehydrogenase, C-terminal domain NE421_17410 PF00743 Flavin-binding monooxygenase-like NE421_17415 PF01196 Ribosomal protein L17 NE421_17420 PF01000 RNA polymerase Rpb3/RpoA insert domain NE421_17420 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain NE421_17420 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain NE421_17425 PF00163 Ribosomal protein S4/S9 N-terminal domain NE421_17425 PF01479 S4 domain NE421_17430 PF00411 Ribosomal protein S11 NE421_17435 PF00416 Ribosomal protein S13/S18 NE421_17440 PF00444 Ribosomal protein L36 NE421_17445 PF00344 SecY translocase NE421_17450 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A NE421_17455 PF00327 Ribosomal protein L30p/L7e NE421_17460 PF03719 Ribosomal protein S5, C-terminal domain NE421_17460 PF00333 Ribosomal protein S5, N-terminal domain NE421_17465 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast NE421_17470 PF00347 Ribosomal protein L6 NE421_17475 PF00410 Ribosomal protein S8 NE421_17480 PF00253 Ribosomal protein S14p/S29e NE421_17485 PF00281 Ribosomal protein L5 NE421_17485 PF00673 ribosomal L5P family C-terminus NE421_17490 PF00467 KOW motif NE421_17490 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 NE421_17495 PF00238 Ribosomal protein L14p/L23e NE421_17500 PF00366 Ribosomal protein S17 NE421_17505 PF00831 Ribosomal L29 protein NE421_17510 PF00252 Ribosomal protein L16p/L10e NE421_17520 PF00237 Ribosomal protein L22p/L17e NE421_17525 PF00203 Ribosomal protein S19 NE421_17530 PF03947 Ribosomal Proteins L2, C-terminal domain NE421_17530 PF00181 Ribosomal Proteins L2, RNA binding domain NE421_17535 PF00276 Ribosomal protein L23 NE421_17540 PF00573 Ribosomal protein L4/L1 family NE421_17545 PF00297 Ribosomal protein L3 NE421_17550 PF00338 Ribosomal protein S10p/S20e NE421_17555 PF00117 Glutamine amidotransferase class-I NE421_17565 PF05872 Bacterial protein of unknown function (DUF853) NE421_17575 PF00970 Oxidoreductase FAD-binding domain NE421_17575 PF00042 Globin NE421_17575 PF00175 Oxidoreductase NAD-binding domain NE421_17580 PF02082 Transcriptional regulator NE421_17585 PF01926 50S ribosome-binding GTPase NE421_17595 PF00375 Sodium:dicarboxylate symporter family NE421_17605 PF01553 Acyltransferase NE421_17620 PF00270 DEAD/DEAH box helicase NE421_17620 PF00271 Helicase conserved C-terminal domain NE421_17620 PF17191 RecG wedge domain NE421_17625 PF00156 Phosphoribosyl transferase domain NE421_17630 PF00293 NUDIX domain NE421_17635 PF03641 Possible lysine decarboxylase NE421_17640 PF01544 CorA-like Mg2+ transporter protein NE421_17650 PF05494 MlaC protein NE421_17660 PF02405 Permease MlaE NE421_17665 PF00005 ABC transporter NE421_17675 PF03880 DbpA RNA binding domain NE421_17675 PF00270 DEAD/DEAH box helicase NE421_17675 PF12343 Cold shock protein DEAD box A NE421_17675 PF00271 Helicase conserved C-terminal domain NE421_17680 PF00459 Inositol monophosphatase family NE421_17685 PF02779 Transketolase, pyrimidine binding domain NE421_17685 PF13292 1-deoxy-D-xylulose-5-phosphate synthase NE421_17685 PF02780 Transketolase, C-terminal domain NE421_17690 PF00925 GTP cyclohydrolase II NE421_17695 PF01218 Coproporphyrinogen III oxidase NE421_17700 PF18317 Shikimate 5'-dehydrogenase C-terminal domain NE421_17700 PF01488 Shikimate / quinate 5-dehydrogenase NE421_17700 PF08501 Shikimate dehydrogenase substrate binding domain NE421_17710 PF02771 Acyl-CoA dehydrogenase, N-terminal domain NE421_17710 PF02770 Acyl-CoA dehydrogenase, middle domain NE421_17710 PF12806 Acetyl-CoA dehydrogenase C-terminal like NE421_17710 PF00441 Acyl-CoA dehydrogenase, C-terminal domain NE421_17720 PF04024 PspC domain NE421_17725 PF00571 CBS domain NE421_17750 PF02091 Glycyl-tRNA synthetase alpha subunit NE421_17755 PF05746 DALR anticodon binding domain NE421_17755 PF02092 Glycyl-tRNA synthetase beta subunit NE421_17760 PF13304 AAA domain, putative AbiEii toxin, Type IV TA system NE421_17775 PF00892 EamA-like transporter family NE421_17780 PF03466 LysR substrate binding domain NE421_17780 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NE421_17795 PF00082 Subtilase family NE421_17795 PF05922 Peptidase inhibitor I9 NE421_17810 PF04952 Succinylglutamate desuccinylase / Aspartoacylase family NE421_17815 PF04996 Succinylarginine dihydrolase NE421_17820 PF00171 Aldehyde dehydrogenase family NE421_17825 PF04958 Arginine N-succinyltransferase beta subunit NE421_17830 PF00202 Aminotransferase class-III NE421_17835 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase NE421_17835 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain NE421_17840 PF00324 Amino acid permease NE421_17850 PF08241 Methyltransferase domain NE421_17870 PF13614 AAA domain NE421_17875 PF01594 AI-2E family transporter NE421_17880 PF00080 Copper/zinc superoxide dismutase (SODC) NE421_17885 PF12805 FUSC-like inner membrane protein yccS NE421_17890 PF07690 Major Facilitator Superfamily NE421_17900 PF02525 Flavodoxin-like fold NE421_17905 PF03992 Antibiotic biosynthesis monooxygenase NE421_17925 PF01565 FAD binding domain NE421_17925 PF02913 FAD linked oxidases, C-terminal domain NE421_17930 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain NE421_17930 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain NE421_17935 PF00892 EamA-like transporter family NE421_17940 PF00892 EamA-like transporter family NE421_17950 PF01925 Sulfite exporter TauE/SafE NE421_17955 PF16198 tRNA pseudouridylate synthase B C-terminal domain NE421_17955 PF01509 TruB family pseudouridylate synthase (N terminal domain) NE421_17955 PF09157 Pseudouridine synthase II TruB, C-terminal NE421_17960 PF03280 Proteobacterial lipase chaperone protein NE421_17965 PF00561 alpha/beta hydrolase fold NE421_17970 PF01245 Ribosomal protein L19 NE421_17975 PF01746 tRNA (Guanine-1)-methyltransferase NE421_17980 PF05239 PRC-barrel domain NE421_17980 PF01782 RimM N-terminal domain NE421_17985 PF00886 Ribosomal protein S16 NE421_18025 PF02401 LytB protein NE421_18030 PF00625 Guanylate kinase NE421_18035 PF01192 RNA polymerase Rpb6 NE421_18045 PF04607 Region found in RelA / SpoT proteins NE421_18045 PF13291 ACT domain NE421_18045 PF02824 TGS domain NE421_18050 PF01042 Endoribonuclease L-PSP NE421_18055 PF04324 BFD-like [2Fe-2S] binding domain NE421_18060 PF00210 Ferritin-like domain NE421_18065 PF04932 O-Antigen ligase NE421_18065 PF15864 Protein glycosylation ligase NE421_18065 PF11846 Virulence factor membrane-bound polymerase, C-terminal NE421_18070 PF00114 Pilin (bacterial filament) NE421_18070 PF07963 Prokaryotic N-terminal methylation motif NE421_18080 PF04536 TPM domain NE421_18085 PF04011 LemA family NE421_18095 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster NE421_18095 PF07992 Pyridine nucleotide-disulphide oxidoreductase NE421_18100 PF00310 Glutamine amidotransferases class-II NE421_18100 PF04898 Glutamate synthase central domain NE421_18100 PF01645 Conserved region in glutamate synthase NE421_18100 PF01493 GXGXG motif NE421_18110 PF01761 3-dehydroquinate synthase NE421_18115 PF01202 Shikimate kinase NE421_18120 PF07660 Secretin and TonB N terminus short domain NE421_18120 PF11741 AMIN domain NE421_18120 PF00263 Bacterial type II and III secretion system protein NE421_18120 PF03958 Bacterial type II/III secretion system short domain NE421_18130 PF04350 Pilus assembly protein, PilO NE421_18135 PF05137 Fimbrial assembly protein (PilN) NE421_18140 PF11104 Type IV pilus assembly protein PilM; NE421_18145 PF17092 Penicillin-binding protein OB-like domain NE421_18145 PF00912 Transglycosylase NE421_18145 PF00905 Penicillin binding protein transpeptidase domain NE421_18150 PF13847 Methyltransferase domain NE421_18160 PF00953 Glycosyl transferase family 4 NE421_18165 PF08245 Mur ligase middle domain NE421_18165 PF02875 Mur ligase family, glutamate ligase domain NE421_18165 PF01225 Mur ligase family, catalytic domain NE421_18170 PF08245 Mur ligase middle domain NE421_18170 PF02875 Mur ligase family, glutamate ligase domain NE421_18170 PF01225 Mur ligase family, catalytic domain NE421_18175 PF03717 Penicillin-binding Protein dimerisation domain NE421_18175 PF00905 Penicillin binding protein transpeptidase domain NE421_18185 PF01795 MraW methylase family NE421_18200 PF00749 tRNA synthetases class I (E and Q), catalytic domain NE421_18215 PF00324 Amino acid permease NE421_18245 PF01545 Cation efflux family NE421_18250 PF00873 AcrB/AcrD/AcrF family NE421_18255 PF00529 HlyD membrane-fusion protein of T1SS NE421_18255 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion NE421_18275 PF04191 Phospholipid methyltransferase NE421_18300 PF00005 ABC transporter NE421_18300 PF12848 ABC transporter NE421_18305 PF01053 Cys/Met metabolism PLP-dependent enzyme NE421_18310 PF00106 short chain dehydrogenase NE421_18315 PF01740 STAS domain NE421_18315 PF00916 Sulfate permease family NE421_18320 PF17674 HHH domain NE421_18320 PF00575 S1 RNA binding domain NE421_18320 PF09371 Tex-like protein N-terminal domain NE421_18320 PF16921 Tex protein YqgF-like domain NE421_18325 PF00072 Response regulator receiver domain NE421_18325 PF00486 Transcriptional regulatory protein, C terminal NE421_18330 PF00512 His Kinase A (phospho-acceptor) domain NE421_18330 PF00672 HAMP domain NE421_18330 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NE421_18340 PF13336 Acetyl-CoA hydrolase/transferase C-terminal domain NE421_18340 PF02550 Acetyl-CoA hydrolase/transferase N-terminal domain NE421_18345 PF00583 Acetyltransferase (GNAT) family NE421_18365 PF00475 Imidazoleglycerol-phosphate dehydratase NE421_18370 PF00117 Glutamine amidotransferase class-I NE421_18385 PF00977 Histidine biosynthesis protein NE421_18400 PF03992 Antibiotic biosynthesis monooxygenase NE421_18415 PF01636 Phosphotransferase enzyme family NE421_18420 PF00977 Histidine biosynthesis protein NE421_18435 PF00230 Major intrinsic protein NE421_18460 PF02705 K+ potassium transporter NE421_18480 PF02525 Flavodoxin-like fold NE421_18485 PF01638 HxlR-like helix-turn-helix NE421_18515 PF02311 AraC-like ligand binding domain NE421_18515 PF12833 Helix-turn-helix domain NE421_18520 PF00248 Aldo/keto reductase family NE421_18540 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NE421_18540 PF03466 LysR substrate binding domain NE421_18545 PF07690 Major Facilitator Superfamily NE421_18565 PF01593 Flavin containing amine oxidoreductase NE421_18570 PF05726 Pirin C-terminal cupin domain NE421_18570 PF02678 Pirin NE421_18575 PF00857 Isochorismatase family NE421_18580 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NE421_18585 PF00171 Aldehyde dehydrogenase family NE421_18590 PF00202 Aminotransferase class-III NE421_18595 PF00155 Aminotransferase class I and II NE421_18595 PF00392 Bacterial regulatory proteins, gntR family NE421_18600 PF00324 Amino acid permease NE421_18610 PF03591 AzlC protein NE421_18620 PF00436 Single-strand binding protein family NE421_18625 PF07690 Major Facilitator Superfamily NE421_18635 PF02581 Thiamine monophosphate synthase NE421_18635 PF08543 Phosphomethylpyrimidine kinase NE421_18635 PF03070 TENA/THI-4/PQQC family NE421_18640 PF06942 GlpM protein NE421_18650 PF08240 Alcohol dehydrogenase GroES-like domain NE421_18650 PF00107 Zinc-binding dehydrogenase NE421_18655 PF16925 Tetracyclin repressor-like, C-terminal domain NE421_18655 PF00440 Bacterial regulatory proteins, tetR family NE421_18660 PF17755 UvrA DNA-binding domain NE421_18660 PF17760 UvrA interaction domain NE421_18660 PF00005 ABC transporter NE421_18670 PF00990 Diguanylate cyclase, GGDEF domain NE421_18680 PF02028 BCCT, betaine/carnitine/choline family transporter NE421_18690 PF00474 Sodium:solute symporter family NE421_18695 PF04341 Protein of unknown function, DUF485 NE421_18700 PF00672 HAMP domain NE421_18700 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NE421_18700 PF00512 His Kinase A (phospho-acceptor) domain NE421_18700 PF01627 Hpt domain NE421_18700 PF00072 Response regulator receiver domain NE421_18710 PF00196 Bacterial regulatory proteins, luxR family NE421_18710 PF00072 Response regulator receiver domain NE421_18715 PF03358 NADPH-dependent FMN reductase NE421_18720 PF00296 Luciferase-like monooxygenase NE421_18725 PF01037 Lrp/AsnC ligand binding domain NE421_18730 PF00857 Isochorismatase family NE421_18735 PF16177 Acetyl-coenzyme A synthetase N-terminus NE421_18735 PF00501 AMP-binding enzyme NE421_18735 PF13193 AMP-binding enzyme C-terminal domain NE421_18745 PF00924 Mechanosensitive ion channel NE421_18750 PF04452 RNA methyltransferase NE421_18755 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) NE421_18760 PF00724 NADH:flavin oxidoreductase / NADH oxidase family NE421_18780 PF01368 DHH family NE421_18780 PF02272 DHHA1 domain NE421_18780 PF17768 RecJ OB domain NE421_18785 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region NE421_18785 PF01243 Pyridoxamine 5'-phosphate oxidase NE421_18790 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I NE421_18790 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II NE421_18790 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain NE421_18790 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III NE421_18795 PF00571 CBS domain NE421_18795 PF00478 IMP dehydrogenase / GMP reductase domain NE421_18800 PF03692 Putative zinc- or iron-chelating domain NE421_18805 PF01613 Flavin reductase like domain NE421_18805 PF00258 Flavodoxin NE421_18810 PF07715 TonB-dependent Receptor Plug Domain NE421_18810 PF00593 TonB dependent receptor NE421_18815 PF01169 Uncharacterized protein family UPF0016 NE421_18825 PF00364 Biotin-requiring enzyme NE421_18825 PF02817 e3 binding domain NE421_18825 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) NE421_18830 PF17831 Pyruvate dehydrogenase E1 component middle domain NE421_18830 PF00456 Transketolase, thiamine diphosphate binding domain NE421_18835 PF01551 Peptidase family M23 NE421_18845 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase NE421_18850 PF12327 FtsZ family, C-terminal domain NE421_18850 PF00091 Tubulin/FtsZ family, GTPase domain NE421_18855 PF02491 SHS2 domain inserted in FTSA NE421_18860 PF08478 POTRA domain, FtsQ-type NE421_18860 PF03799 Cell division protein FtsQ NE421_18865 PF07478 D-ala D-ala ligase C-terminus NE421_18865 PF01820 D-ala D-ala ligase N-terminus NE421_18870 PF01225 Mur ligase family, catalytic domain NE421_18870 PF02875 Mur ligase family, glutamate ligase domain NE421_18870 PF08245 Mur ligase middle domain NE421_18875 PF03033 Glycosyltransferase family 28 N-terminal domain NE421_18875 PF04101 Glycosyltransferase family 28 C-terminal domain NE421_18880 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain NE421_18880 PF02951 Prokaryotic glutathione synthetase, N-terminal domain NE421_18890 PF07715 TonB-dependent Receptor Plug Domain NE421_18890 PF00593 TonB dependent receptor NE421_18900 PF00156 Phosphoribosyl transferase domain NE421_18905 PF03372 Endonuclease/Exonuclease/phosphatase family NE421_18910 PF03960 ArsC family NE421_18920 PF07859 alpha/beta hydrolase fold NE421_18925 PF07694 5TMR of 5TMR-LYT NE421_18925 PF00990 Diguanylate cyclase, GGDEF domain NE421_18930 PF02683 Cytochrome C biogenesis protein transmembrane region NE421_18930 PF11412 Disulphide bond corrector protein DsbC NE421_18960 PF00576 HIUase/Transthyretin family NE421_18965 PF00860 Permease family NE421_18975 PF01494 FAD binding domain NE421_18980 PF03561 Allantoicase repeat NE421_18985 PF04115 Ureidoglycolate lyase NE421_18990 PF00106 short chain dehydrogenase NE421_18995 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NE421_18995 PF01751 Toprim domain NE421_18995 PF00204 DNA gyrase B NE421_18995 PF00986 DNA gyrase B subunit, carboxyl terminus NE421_19000 PF05728 Uncharacterised protein family (UPF0227) NE421_19045 PF01510 N-acetylmuramoyl-L-alanine amidase NE421_19045 PF01476 LysM domain NE421_19045 PF01471 Putative peptidoglycan binding domain NE421_19050 PF10106 Uncharacterized protein conserved in bacteria (DUF2345) NE421_19050 PF04717 Type VI secretion system, phage-baseplate injector NE421_19050 PF13296 Putative type VI secretion system Rhs element Vgr NE421_19055 PF02600 Disulfide bond formation protein DsbB NE421_19060 PF04262 Glutamate-cysteine ligase NE421_19075 PF04286 Protein of unknown function (DUF445) NE421_19080 PF00155 Aminotransferase class I and II NE421_19085 PF01554 MatE NE421_19090 PF00106 short chain dehydrogenase NE421_19100 PF00072 Response regulator receiver domain NE421_19100 PF00486 Transcriptional regulatory protein, C terminal NE421_19105 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NE421_19105 PF00512 His Kinase A (phospho-acceptor) domain NE421_19105 PF00989 PAS fold NE421_19105 PF11808 Phosphate regulon sensor protein PhoR NE421_19115 PF02666 Phosphatidylserine decarboxylase NE421_19120 PF00581 Rhodanese-like domain NE421_19125 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family NE421_19125 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain NE421_19130 PF02580 D-Tyr-tRNA(Tyr) deacylase NE421_19155 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase NE421_19155 PF00925 GTP cyclohydrolase II NE421_19160 PF00885 6,7-dimethyl-8-ribityllumazine synthase NE421_19165 PF01029 NusB family NE421_19170 PF02769 AIR synthase related protein, C-terminal domain NE421_19170 PF00586 AIR synthase related protein, N-terminal domain NE421_19175 PF04608 Phosphatidylglycerophosphatase A NE421_19180 PF00132 Bacterial transferase hexapeptide (six repeats) NE421_19180 PF14602 Hexapeptide repeat of succinyl-transferase NE421_19180 PF12804 MobA-like NTP transferase domain NE421_19185 PF01380 SIS domain NE421_19200 PF01177 Asp/Glu/Hydantoin racemase NE421_19215 PF00491 Arginase family NE421_19220 PF01979 Amidohydrolase family NE421_19225 PF00324 Amino acid permease NE421_19230 PF00221 Aromatic amino acid lyase NE421_19235 PF01175 Urocanase Rossmann-like domain NE421_19235 PF17392 Urocanase C-terminal domain NE421_19235 PF17391 Urocanase N-terminal domain NE421_19240 PF05962 HutD NE421_19245 PF00392 Bacterial regulatory proteins, gntR family NE421_19245 PF07702 UTRA domain NE421_19255 PF02492 CobW/HypB/UreG, nucleotide-binding domain NE421_19255 PF07683 Cobalamin synthesis protein cobW C-terminal domain NE421_19265 PF00324 Amino acid permease NE421_19275 PF14497 Glutathione S-transferase, C-terminal domain NE421_19275 PF02798 Glutathione S-transferase, N-terminal domain NE421_19280 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily NE421_19290 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily NE421_19295 PF04463 Protein of unknown function (DUF523) NE421_19300 PF01554 MatE NE421_19305 PF01758 Sodium Bile acid symporter family NE421_19310 PF00857 Isochorismatase family NE421_19315 PF00701 Dihydrodipicolinate synthetase family NE421_19325 PF01259 SAICAR synthetase NE421_19335 PF01226 Formate/nitrite transporter NE421_19340 PF00004 ATPase family associated with various cellular activities (AAA) NE421_19340 PF16193 AAA C-terminal domain NE421_19340 PF12002 MgsA AAA+ ATPase C terminal NE421_19345 PF07995 Glucose / Sorbosone dehydrogenase NE421_19350 PF03692 Putative zinc- or iron-chelating domain NE421_19355 PF07043 Protein of unknown function (DUF1328) NE421_19370 PF10576 Iron-sulfur binding domain of endonuclease III NE421_19370 PF00633 Helix-hairpin-helix motif NE421_19370 PF00730 HhH-GPD superfamily base excision DNA repair protein NE421_19370 PF14815 NUDIX domain NE421_19385 PF03352 Methyladenine glycosylase NE421_19390 PF08240 Alcohol dehydrogenase GroES-like domain NE421_19390 PF00107 Zinc-binding dehydrogenase NE421_19395 PF00392 Bacterial regulatory proteins, gntR family NE421_19395 PF00155 Aminotransferase class I and II NE421_19410 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NE421_19410 PF03466 LysR substrate binding domain NE421_19415 PF00248 Aldo/keto reductase family NE421_19420 PF07690 Major Facilitator Superfamily NE421_19430 PF05173 Dihydrodipicolinate reductase, C-terminus NE421_19430 PF01113 Dihydrodipicolinate reductase, N-terminus NE421_19440 PF00684 DnaJ central domain NE421_19440 PF00226 DnaJ domain NE421_19440 PF01556 DnaJ C terminal domain NE421_19450 PF00873 AcrB/AcrD/AcrF family NE421_19455 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion NE421_19460 PF08361 MAATS-type transcriptional repressor, C-terminal region NE421_19460 PF00440 Bacterial regulatory proteins, tetR family NE421_19465 PF00311 Phosphoenolpyruvate carboxylase NE421_19470 PF00860 Permease family NE421_19475 PF03466 LysR substrate binding domain NE421_19475 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NE421_19490 PF00920 Dehydratase family NE421_19495 PF02911 Formyl transferase, C-terminal domain NE421_19495 PF00551 Formyl transferase NE421_19500 PF01029 NusB family NE421_19500 PF01189 16S rRNA methyltransferase RsmB/F NE421_19510 PF00209 Sodium:neurotransmitter symporter family NE421_19550 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD NE421_19555 PF07859 alpha/beta hydrolase fold NE421_19575 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NE421_19575 PF03466 LysR substrate binding domain NE421_19580 PF01025 GrpE NE421_19585 PF00012 Hsp70 protein NE421_19605 PF13406 Transglycosylase SLT domain NE421_19610 PF02222 ATP-grasp domain NE421_19610 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain NE421_19615 PF00731 AIR carboxylase NE421_19625 PF01225 Mur ligase family, catalytic domain NE421_19625 PF02875 Mur ligase family, glutamate ligase domain NE421_19625 PF08245 Mur ligase middle domain NE421_19635 PF01569 PAP2 superfamily NE421_19640 PF03741 Integral membrane protein TerC family NE421_19650 PF03738 Glutathionylspermidine synthase preATP-grasp NE421_19655 PF00355 Rieske [2Fe-2S] domain NE421_19660 PF01979 Amidohydrolase family NE421_19665 PF00156 Phosphoribosyl transferase domain NE421_19675 PF13098 Thioredoxin-like domain NE421_19675 PF10411 Disulfide bond isomerase protein N-terminus NE421_19680 PF16916 Dimerisation domain of Zinc Transporter NE421_19680 PF01545 Cation efflux family NE421_19685 PF02583 Metal-sensitive transcriptional repressor NE421_19690 PF01926 50S ribosome-binding GTPase NE421_19690 PF12631 MnmE helical domain NE421_19690 PF10396 GTP-binding protein TrmE N-terminus NE421_19695 PF02096 60Kd inner membrane protein NE421_19695 PF14849 YidC periplasmic domain NE421_19700 PF01809 Putative membrane protein insertion efficiency factor NE421_19705 PF00825 Ribonuclease P NE421_19710 PF00468 Ribosomal protein L34 NE421_19770 PF02661 Fic/DOC family NE421_19800 PF13438 Domain of unknown function (DUF4113) NE421_19800 PF00817 impB/mucB/samB family NE421_19800 PF11799 impB/mucB/samB family C-terminal domain NE421_19805 PF01726 LexA DNA binding domain NE421_19805 PF00717 Peptidase S24-like NE421_19825 PF04233 Phage Mu protein F like protein NE421_19830 PF00589 Phage integrase family NE421_19830 PF13356 Arm DNA-binding domain NE421_19835 PF13411 MerR HTH family regulatory protein NE421_19845 PF01545 Cation efflux family NE421_19875 PF13411 MerR HTH family regulatory protein NE421_19885 PF01252 Signal peptidase (SPase) II NE421_19895 PF02796 Helix-turn-helix domain of resolvase NE421_19895 PF00239 Resolvase, N terminal domain NE421_19900 PF01526 Tn3 transposase DDE domain NE421_19900 PF13700 Domain of unknown function (DUF4158) NE421_19905 PF02311 AraC-like ligand binding domain NE421_19905 PF12833 Helix-turn-helix domain NE421_19910 PF00111 2Fe-2S iron-sulfur cluster binding domain NE421_19915 PF00067 Cytochrome P450 NE421_19920 PF07992 Pyridine nucleotide-disulphide oxidoreductase NE421_19920 PF14759 Reductase C-terminal NE421_19940 PF17932 Tetracyclin repressor-like, C-terminal domain NE421_19940 PF00440 Bacterial regulatory proteins, tetR family NE421_19985 PF13173 AAA domain NE421_19985 PF13635 Domain of unknown function (DUF4143) NE421_20060 PF13610 DDE domain NE421_20070 PF13610 DDE domain NE421_20080 PF02522 Aminoglycoside 3-N-acetyltransferase NE421_20085 PF01965 DJ-1/PfpI family NE421_20090 PF13610 DDE domain NE421_20100 PF13610 DDE domain NE421_20115 PF01381 Helix-turn-helix NE421_20120 PF00239 Resolvase, N terminal domain NE421_20120 PF02796 Helix-turn-helix domain of resolvase NE421_20130 PF01636 Phosphotransferase enzyme family NE421_20135 PF12848 ABC transporter NE421_20135 PF00005 ABC transporter NE421_20155 PF00872 Transposase, Mutator family NE421_20160 PF01381 Helix-turn-helix NE421_20165 PF05973 Phage derived protein Gp49-like (DUF891) NE421_20195 PF00665 Integrase core domain NE421_20195 PF13936 Helix-turn-helix domain NE421_20200 PF01636 Phosphotransferase enzyme family NE421_20205 PF00665 Integrase core domain NE421_20205 PF13936 Helix-turn-helix domain NE421_20215 PF12833 Helix-turn-helix domain NE421_20225 PF00905 Penicillin binding protein transpeptidase domain NE421_20240 PF00893 Small Multidrug Resistance protein NE421_20245 PF13610 DDE domain NE421_20265 PF13610 DDE domain NE421_20275 PF00809 Pterin binding enzyme NE421_20280 PF00893 Small Multidrug Resistance protein NE421_20295 PF13610 DDE domain NE421_20315 PF02661 Fic/DOC family NE421_20335 PF13737 Transposase DDE domain NE421_20340 PF00665 Integrase core domain NE421_20340 PF13936 Helix-turn-helix domain NE421_20355 PF00118 TCP-1/cpn60 chaperonin family NE421_20360 PF00166 Chaperonin 10 Kd subunit NE421_20365 PF03091 CutA1 divalent ion tolerance protein NE421_20380 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase NE421_20390 PF00753 Metallo-beta-lactamase superfamily NE421_20395 PF13936 Helix-turn-helix domain NE421_20395 PF00665 Integrase core domain NE421_20415 PF17762 HTH domain found in ParB protein NE421_20415 PF02195 ParB-like nuclease domain NE421_20420 PF13614 AAA domain NE421_20430 PF13610 DDE domain NE421_20435 PF00376 MerR family regulatory protein NE421_20435 PF09278 MerR, DNA binding NE421_20440 PF02411 MerT mercuric transport protein NE421_20445 PF00403 Heavy-metal-associated domain NE421_20450 PF03203 MerC mercury resistance protein NE421_20455 PF00403 Heavy-metal-associated domain NE421_20455 PF07992 Pyridine nucleotide-disulphide oxidoreductase NE421_20455 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain NE421_20460 PF13411 MerR HTH family regulatory protein NE421_20465 PF05052 MerE protein NE421_20470 PF11809 Domain of unknown function (DUF3330) NE421_20470 PF00563 EAL domain NE421_20480 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain NE421_20485 PF01051 Initiator Replication protein NE421_20495 PF07690 Major Facilitator Superfamily NE421_20500 PF02909 Tetracyclin repressor-like, C-terminal domain NE421_20500 PF00440 Bacterial regulatory proteins, tetR family NE421_20540 PF03389 MobA/MobL family NE421_20565 PF01051 Initiator Replication protein