locus-tag class description KUE09_00005 PF00308 Bacterial dnaA protein KUE09_00005 PF08299 Bacterial dnaA protein helix-turn-helix KUE09_00005 PF11638 DnaA N-terminal domain KUE09_00010 PF00712 DNA polymerase III beta subunit, N-terminal domain KUE09_00010 PF02767 DNA polymerase III beta subunit, central domain KUE09_00010 PF02768 DNA polymerase III beta subunit, C-terminal domain KUE09_00015 PF02463 RecF/RecN/SMC N terminal domain KUE09_00020 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KUE09_00020 PF18053 DNA gyrase B subunit insert domain KUE09_00020 PF01751 Toprim domain KUE09_00020 PF00204 DNA gyrase B KUE09_00020 PF00986 DNA gyrase B subunit, carboxyl terminus KUE09_00030 PF09335 SNARE associated Golgi protein KUE09_00035 PF00005 ABC transporter KUE09_00035 PF12848 ABC transporter KUE09_00055 PF01521 Iron-sulphur cluster biosynthesis KUE09_00060 PF00561 alpha/beta hydrolase fold KUE09_00065 PF03702 Anhydro-N-acetylmuramic acid kinase KUE09_00070 PF00579 tRNA synthetases class I (W and Y) KUE09_00110 PF00209 Sodium:neurotransmitter symporter family KUE09_00120 PF01189 16S rRNA methyltransferase RsmB/F KUE09_00120 PF01029 NusB family KUE09_00125 PF02911 Formyl transferase, C-terminal domain KUE09_00125 PF00551 Formyl transferase KUE09_00130 PF00920 Dehydratase family KUE09_00145 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KUE09_00145 PF03466 LysR substrate binding domain KUE09_00150 PF00860 Permease family KUE09_00155 PF00311 Phosphoenolpyruvate carboxylase KUE09_00160 PF08361 MAATS-type transcriptional repressor, C-terminal region KUE09_00160 PF00440 Bacterial regulatory proteins, tetR family KUE09_00165 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion KUE09_00170 PF00873 AcrB/AcrD/AcrF family KUE09_00180 PF00226 DnaJ domain KUE09_00180 PF01556 DnaJ C terminal domain KUE09_00180 PF00684 DnaJ central domain KUE09_00190 PF01113 Dihydrodipicolinate reductase, N-terminus KUE09_00190 PF05173 Dihydrodipicolinate reductase, C-terminus KUE09_00200 PF07690 Major Facilitator Superfamily KUE09_00205 PF00248 Aldo/keto reductase family KUE09_00210 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KUE09_00210 PF03466 LysR substrate binding domain KUE09_00225 PF00392 Bacterial regulatory proteins, gntR family KUE09_00225 PF00155 Aminotransferase class I and II KUE09_00230 PF08240 Alcohol dehydrogenase GroES-like domain KUE09_00230 PF00107 Zinc-binding dehydrogenase KUE09_00235 PF03352 Methyladenine glycosylase KUE09_00250 PF00730 HhH-GPD superfamily base excision DNA repair protein KUE09_00250 PF14815 NUDIX domain KUE09_00250 PF00633 Helix-hairpin-helix motif KUE09_00250 PF10576 Iron-sulfur binding domain of endonuclease III KUE09_00265 PF07043 Protein of unknown function (DUF1328) KUE09_00270 PF03692 Putative zinc- or iron-chelating domain KUE09_00275 PF07995 Glucose / Sorbosone dehydrogenase KUE09_00280 PF00004 ATPase family associated with various cellular activities (AAA) KUE09_00280 PF16193 AAA C-terminal domain KUE09_00280 PF12002 MgsA AAA+ ATPase C terminal KUE09_00285 PF01226 Formate/nitrite transporter KUE09_00295 PF01259 SAICAR synthetase KUE09_00305 PF00701 Dihydrodipicolinate synthetase family KUE09_00310 PF00857 Isochorismatase family KUE09_00315 PF01758 Sodium Bile acid symporter family KUE09_00320 PF01554 MatE KUE09_00325 PF04463 Protein of unknown function (DUF523) KUE09_00330 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily KUE09_00340 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily KUE09_00345 PF02798 Glutathione S-transferase, N-terminal domain KUE09_00345 PF14497 Glutathione S-transferase, C-terminal domain KUE09_00355 PF00324 Amino acid permease KUE09_00365 PF07683 Cobalamin synthesis protein cobW C-terminal domain KUE09_00365 PF02492 CobW/HypB/UreG, nucleotide-binding domain KUE09_00375 PF00392 Bacterial regulatory proteins, gntR family KUE09_00375 PF07702 UTRA domain KUE09_00380 PF05962 HutD KUE09_00385 PF17392 Urocanase C-terminal domain KUE09_00385 PF01175 Urocanase Rossmann-like domain KUE09_00385 PF17391 Urocanase N-terminal domain KUE09_00390 PF00221 Aromatic amino acid lyase KUE09_00395 PF00324 Amino acid permease KUE09_00400 PF01979 Amidohydrolase family KUE09_00405 PF00491 Arginase family KUE09_00415 PF13419 Haloacid dehalogenase-like hydrolase KUE09_00420 PF01177 Asp/Glu/Hydantoin racemase KUE09_00425 PF01380 SIS domain KUE09_00430 PF00132 Bacterial transferase hexapeptide (six repeats) KUE09_00430 PF14602 Hexapeptide repeat of succinyl-transferase KUE09_00430 PF12804 MobA-like NTP transferase domain KUE09_00435 PF04608 Phosphatidylglycerophosphatase A KUE09_00440 PF02769 AIR synthase related protein, C-terminal domain KUE09_00440 PF00586 AIR synthase related protein, N-terminal domain KUE09_00445 PF01029 NusB family KUE09_00450 PF00885 6,7-dimethyl-8-ribityllumazine synthase KUE09_00455 PF00925 GTP cyclohydrolase II KUE09_00455 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase KUE09_00480 PF02580 D-Tyr-tRNA(Tyr) deacylase KUE09_00485 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain KUE09_00485 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family KUE09_00490 PF00581 Rhodanese-like domain KUE09_00495 PF02666 Phosphatidylserine decarboxylase KUE09_00505 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KUE09_00505 PF00989 PAS fold KUE09_00505 PF11808 Phosphate regulon sensor protein PhoR KUE09_00505 PF00512 His Kinase A (phospho-acceptor) domain KUE09_00510 PF00072 Response regulator receiver domain KUE09_00510 PF00486 Transcriptional regulatory protein, C terminal KUE09_00520 PF00106 short chain dehydrogenase KUE09_00525 PF01554 MatE KUE09_00530 PF00155 Aminotransferase class I and II KUE09_00535 PF04286 Protein of unknown function (DUF445) KUE09_00550 PF04262 Glutamate-cysteine ligase KUE09_00555 PF02600 Disulfide bond formation protein DsbB KUE09_00585 PF00905 Penicillin binding protein transpeptidase domain KUE09_00600 PF01471 Putative peptidoglycan binding domain KUE09_00600 PF01476 LysM domain KUE09_00600 PF01510 N-acetylmuramoyl-L-alanine amidase KUE09_00645 PF05728 Uncharacterised protein family (UPF0227) KUE09_00650 PF01751 Toprim domain KUE09_00650 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KUE09_00650 PF00986 DNA gyrase B subunit, carboxyl terminus KUE09_00650 PF00204 DNA gyrase B KUE09_00655 PF00106 short chain dehydrogenase KUE09_00660 PF04115 Ureidoglycolate lyase KUE09_00665 PF03561 Allantoicase repeat KUE09_00670 PF01494 FAD binding domain KUE09_00680 PF00860 Permease family KUE09_00685 PF00576 HIUase/Transthyretin family KUE09_00715 PF11412 Disulphide bond corrector protein DsbC KUE09_00715 PF02683 Cytochrome C biogenesis protein transmembrane region KUE09_00720 PF07694 5TMR of 5TMR-LYT KUE09_00720 PF00990 Diguanylate cyclase, GGDEF domain KUE09_00725 PF07859 alpha/beta hydrolase fold KUE09_00735 PF03960 ArsC family KUE09_00740 PF03372 Endonuclease/Exonuclease/phosphatase family KUE09_00745 PF00156 Phosphoribosyl transferase domain KUE09_00770 PF02951 Prokaryotic glutathione synthetase, N-terminal domain KUE09_00770 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain KUE09_00775 PF03033 Glycosyltransferase family 28 N-terminal domain KUE09_00775 PF04101 Glycosyltransferase family 28 C-terminal domain KUE09_00780 PF08245 Mur ligase middle domain KUE09_00780 PF02875 Mur ligase family, glutamate ligase domain KUE09_00780 PF01225 Mur ligase family, catalytic domain KUE09_00785 PF01820 D-ala D-ala ligase N-terminus KUE09_00785 PF07478 D-ala D-ala ligase C-terminus KUE09_00790 PF08478 POTRA domain, FtsQ-type KUE09_00790 PF03799 Cell division protein FtsQ KUE09_00795 PF02491 SHS2 domain inserted in FTSA KUE09_00800 PF00091 Tubulin/FtsZ family, GTPase domain KUE09_00800 PF12327 FtsZ family, C-terminal domain KUE09_00805 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase KUE09_00815 PF01551 Peptidase family M23 KUE09_00820 PF00456 Transketolase, thiamine diphosphate binding domain KUE09_00820 PF17831 Pyruvate dehydrogenase E1 component middle domain KUE09_00825 PF00364 Biotin-requiring enzyme KUE09_00825 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) KUE09_00825 PF02817 e3 binding domain KUE09_00835 PF01169 Uncharacterized protein family UPF0016 KUE09_00840 PF00593 TonB dependent receptor KUE09_00840 PF07715 TonB-dependent Receptor Plug Domain KUE09_00845 PF00258 Flavodoxin KUE09_00845 PF01613 Flavin reductase like domain KUE09_00850 PF03692 Putative zinc- or iron-chelating domain KUE09_00855 PF00478 IMP dehydrogenase / GMP reductase domain KUE09_00855 PF00571 CBS domain KUE09_00860 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain KUE09_00860 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II KUE09_00860 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I KUE09_00860 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III KUE09_00865 PF01243 Pyridoxamine 5'-phosphate oxidase KUE09_00865 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region KUE09_00870 PF17768 RecJ OB domain KUE09_00870 PF01368 DHH family KUE09_00870 PF02272 DHHA1 domain KUE09_00895 PF00724 NADH:flavin oxidoreductase / NADH oxidase family KUE09_00900 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) KUE09_00905 PF04452 RNA methyltransferase KUE09_00910 PF00924 Mechanosensitive ion channel KUE09_00920 PF13193 AMP-binding enzyme C-terminal domain KUE09_00920 PF00501 AMP-binding enzyme KUE09_00920 PF16177 Acetyl-coenzyme A synthetase N-terminus KUE09_00925 PF00857 Isochorismatase family KUE09_00930 PF01037 Lrp/AsnC ligand binding domain KUE09_00935 PF00296 Luciferase-like monooxygenase KUE09_00940 PF03358 NADPH-dependent FMN reductase KUE09_00945 PF00196 Bacterial regulatory proteins, luxR family KUE09_00945 PF00072 Response regulator receiver domain KUE09_00955 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KUE09_00955 PF00512 His Kinase A (phospho-acceptor) domain KUE09_00955 PF01627 Hpt domain KUE09_00955 PF00072 Response regulator receiver domain KUE09_00955 PF00672 HAMP domain KUE09_00960 PF04341 Protein of unknown function, DUF485 KUE09_00965 PF00474 Sodium:solute symporter family KUE09_00985 PF00990 Diguanylate cyclase, GGDEF domain KUE09_00990 PF17755 UvrA DNA-binding domain KUE09_00990 PF17760 UvrA interaction domain KUE09_00995 PF00440 Bacterial regulatory proteins, tetR family KUE09_00995 PF16925 Tetracyclin repressor-like, C-terminal domain KUE09_01000 PF00107 Zinc-binding dehydrogenase KUE09_01000 PF08240 Alcohol dehydrogenase GroES-like domain KUE09_01010 PF06942 GlpM protein KUE09_01015 PF08543 Phosphomethylpyrimidine kinase KUE09_01015 PF03070 TENA/THI-4/PQQC family KUE09_01015 PF02581 Thiamine monophosphate synthase KUE09_01025 PF07690 Major Facilitator Superfamily KUE09_01030 PF00436 Single-strand binding protein family KUE09_01040 PF03591 AzlC protein KUE09_01050 PF00324 Amino acid permease KUE09_01055 PF00392 Bacterial regulatory proteins, gntR family KUE09_01055 PF00155 Aminotransferase class I and II KUE09_01060 PF00202 Aminotransferase class-III KUE09_01065 PF00171 Aldehyde dehydrogenase family KUE09_01070 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KUE09_01075 PF00857 Isochorismatase family KUE09_01080 PF05726 Pirin C-terminal cupin domain KUE09_01080 PF02678 Pirin KUE09_01085 PF01593 Flavin containing amine oxidoreductase KUE09_01105 PF07690 Major Facilitator Superfamily KUE09_01110 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KUE09_01110 PF03466 LysR substrate binding domain KUE09_01130 PF00248 Aldo/keto reductase family KUE09_01135 PF02311 AraC-like ligand binding domain KUE09_01135 PF12833 Helix-turn-helix domain KUE09_01150 PF01638 HxlR-like helix-turn-helix KUE09_01180 PF01638 HxlR-like helix-turn-helix KUE09_01185 PF02525 Flavodoxin-like fold KUE09_01220 PF02705 K+ potassium transporter KUE09_01245 PF00230 Major intrinsic protein KUE09_01260 PF00977 Histidine biosynthesis protein KUE09_01265 PF01636 Phosphotransferase enzyme family KUE09_01280 PF03992 Antibiotic biosynthesis monooxygenase KUE09_01295 PF00664 ABC transporter transmembrane region KUE09_01295 PF00005 ABC transporter KUE09_01300 PF00977 Histidine biosynthesis protein KUE09_01315 PF00117 Glutamine amidotransferase class-I KUE09_01320 PF00475 Imidazoleglycerol-phosphate dehydratase KUE09_01340 PF00583 Acetyltransferase (GNAT) family KUE09_01345 PF13336 Acetyl-CoA hydrolase/transferase C-terminal domain KUE09_01345 PF02550 Acetyl-CoA hydrolase/transferase N-terminal domain KUE09_01355 PF00672 HAMP domain KUE09_01355 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KUE09_01355 PF00512 His Kinase A (phospho-acceptor) domain KUE09_01360 PF00072 Response regulator receiver domain KUE09_01360 PF00486 Transcriptional regulatory protein, C terminal KUE09_01365 PF17674 HHH domain KUE09_01365 PF00575 S1 RNA binding domain KUE09_01365 PF16921 Tex protein YqgF-like domain KUE09_01365 PF09371 Tex-like protein N-terminal domain KUE09_01370 PF00916 Sulfate permease family KUE09_01370 PF01740 STAS domain KUE09_01375 PF00106 short chain dehydrogenase KUE09_01380 PF01053 Cys/Met metabolism PLP-dependent enzyme KUE09_01385 PF12848 ABC transporter KUE09_01385 PF00005 ABC transporter KUE09_01410 PF04191 Phospholipid methyltransferase KUE09_01430 PF00529 HlyD membrane-fusion protein of T1SS KUE09_01430 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion KUE09_01435 PF00873 AcrB/AcrD/AcrF family KUE09_01440 PF01545 Cation efflux family KUE09_01470 PF00324 Amino acid permease KUE09_01485 PF00749 tRNA synthetases class I (E and Q), catalytic domain KUE09_01500 PF01795 MraW methylase family KUE09_01510 PF03717 Penicillin-binding Protein dimerisation domain KUE09_01510 PF00905 Penicillin binding protein transpeptidase domain KUE09_01515 PF08245 Mur ligase middle domain KUE09_01515 PF02875 Mur ligase family, glutamate ligase domain KUE09_01515 PF01225 Mur ligase family, catalytic domain KUE09_01520 PF01225 Mur ligase family, catalytic domain KUE09_01520 PF08245 Mur ligase middle domain KUE09_01520 PF02875 Mur ligase family, glutamate ligase domain KUE09_01525 PF00953 Glycosyl transferase family 4 KUE09_01535 PF13847 Methyltransferase domain KUE09_01540 PF00905 Penicillin binding protein transpeptidase domain KUE09_01540 PF00912 Transglycosylase KUE09_01540 PF17092 Penicillin-binding protein OB-like domain KUE09_01545 PF11104 Type IV pilus assembly protein PilM; KUE09_01550 PF05137 Fimbrial assembly protein (PilN) KUE09_01555 PF04350 Pilus assembly protein, PilO KUE09_01565 PF03958 Bacterial type II/III secretion system short domain KUE09_01565 PF11741 AMIN domain KUE09_01565 PF07660 Secretin and TonB N terminus short domain KUE09_01565 PF00263 Bacterial type II and III secretion system protein KUE09_01570 PF01202 Shikimate kinase KUE09_01575 PF01761 3-dehydroquinate synthase KUE09_01585 PF04898 Glutamate synthase central domain KUE09_01585 PF01645 Conserved region in glutamate synthase KUE09_01585 PF00310 Glutamine amidotransferases class-II KUE09_01585 PF01493 GXGXG motif KUE09_01590 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster KUE09_01590 PF07992 Pyridine nucleotide-disulphide oxidoreductase KUE09_01600 PF04011 LemA family KUE09_01605 PF04536 TPM domain KUE09_01615 PF07963 Prokaryotic N-terminal methylation motif KUE09_01615 PF00114 Pilin (bacterial filament) KUE09_01620 PF15864 Protein glycosylation ligase KUE09_01620 PF04932 O-Antigen ligase KUE09_01620 PF11846 Virulence factor membrane-bound polymerase, C-terminal KUE09_01625 PF00210 Ferritin-like domain KUE09_01630 PF04324 BFD-like [2Fe-2S] binding domain KUE09_01635 PF01042 Endoribonuclease L-PSP KUE09_01640 PF13291 ACT domain KUE09_01640 PF02824 TGS domain KUE09_01640 PF04607 Region found in RelA / SpoT proteins KUE09_01650 PF01192 RNA polymerase Rpb6 KUE09_01655 PF00625 Guanylate kinase KUE09_01660 PF02401 LytB protein KUE09_01700 PF00886 Ribosomal protein S16 KUE09_01705 PF01782 RimM N-terminal domain KUE09_01705 PF05239 PRC-barrel domain KUE09_01710 PF01746 tRNA (Guanine-1)-methyltransferase KUE09_01715 PF01245 Ribosomal protein L19 KUE09_01720 PF00561 alpha/beta hydrolase fold KUE09_01730 PF09157 Pseudouridine synthase II TruB, C-terminal KUE09_01730 PF01509 TruB family pseudouridylate synthase (N terminal domain) KUE09_01730 PF16198 tRNA pseudouridylate synthase B C-terminal domain KUE09_01735 PF01925 Sulfite exporter TauE/SafE KUE09_01745 PF00892 EamA-like transporter family KUE09_01750 PF00892 EamA-like transporter family KUE09_01755 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain KUE09_01755 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain KUE09_01760 PF01565 FAD binding domain KUE09_01760 PF02913 FAD linked oxidases, C-terminal domain KUE09_01770 PF03992 Antibiotic biosynthesis monooxygenase KUE09_01775 PF02525 Flavodoxin-like fold KUE09_01785 PF07690 Major Facilitator Superfamily KUE09_01790 PF12805 FUSC-like inner membrane protein yccS KUE09_01795 PF00080 Copper/zinc superoxide dismutase (SODC) KUE09_01800 PF01594 AI-2E family transporter KUE09_01805 PF13614 AAA domain KUE09_01825 PF08241 Methyltransferase domain KUE09_01835 PF00324 Amino acid permease KUE09_01840 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase KUE09_01840 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain KUE09_01845 PF00202 Aminotransferase class-III KUE09_01850 PF04958 Arginine N-succinyltransferase beta subunit KUE09_01855 PF00171 Aldehyde dehydrogenase family KUE09_01860 PF04996 Succinylarginine dihydrolase KUE09_01865 PF04952 Succinylglutamate desuccinylase / Aspartoacylase family KUE09_01880 PF05922 Peptidase inhibitor I9 KUE09_01880 PF00082 Subtilase family KUE09_01895 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KUE09_01895 PF03466 LysR substrate binding domain KUE09_01915 PF13304 AAA domain, putative AbiEii toxin, Type IV TA system KUE09_01920 PF05746 DALR anticodon binding domain KUE09_01920 PF02092 Glycyl-tRNA synthetase beta subunit KUE09_01925 PF02091 Glycyl-tRNA synthetase alpha subunit KUE09_01950 PF00571 CBS domain KUE09_01955 PF04024 PspC domain KUE09_01965 PF02770 Acyl-CoA dehydrogenase, middle domain KUE09_01965 PF00441 Acyl-CoA dehydrogenase, C-terminal domain KUE09_01965 PF12806 Acetyl-CoA dehydrogenase C-terminal like KUE09_01965 PF02771 Acyl-CoA dehydrogenase, N-terminal domain KUE09_01975 PF18317 Shikimate 5'-dehydrogenase C-terminal domain KUE09_01975 PF01488 Shikimate / quinate 5-dehydrogenase KUE09_01975 PF08501 Shikimate dehydrogenase substrate binding domain KUE09_01980 PF01218 Coproporphyrinogen III oxidase KUE09_01985 PF00925 GTP cyclohydrolase II KUE09_01990 PF13292 1-deoxy-D-xylulose-5-phosphate synthase KUE09_01990 PF02780 Transketolase, C-terminal domain KUE09_01990 PF02779 Transketolase, pyrimidine binding domain KUE09_01995 PF00459 Inositol monophosphatase family KUE09_02000 PF03880 DbpA RNA binding domain KUE09_02000 PF00270 DEAD/DEAH box helicase KUE09_02000 PF12343 Cold shock protein DEAD box A KUE09_02000 PF00271 Helicase conserved C-terminal domain KUE09_02010 PF00005 ABC transporter KUE09_02015 PF02405 Permease MlaE KUE09_02025 PF05494 MlaC protein KUE09_02035 PF01544 CorA-like Mg2+ transporter protein KUE09_02040 PF03641 Possible lysine decarboxylase KUE09_02045 PF00293 NUDIX domain KUE09_02050 PF00156 Phosphoribosyl transferase domain KUE09_02055 PF17191 RecG wedge domain KUE09_02055 PF00271 Helicase conserved C-terminal domain KUE09_02055 PF00270 DEAD/DEAH box helicase KUE09_02070 PF01553 Acyltransferase KUE09_02080 PF00375 Sodium:dicarboxylate symporter family KUE09_02090 PF01926 50S ribosome-binding GTPase KUE09_02095 PF02082 Transcriptional regulator KUE09_02100 PF00970 Oxidoreductase FAD-binding domain KUE09_02100 PF00042 Globin KUE09_02100 PF00175 Oxidoreductase NAD-binding domain KUE09_02110 PF05872 Bacterial protein of unknown function (DUF853) KUE09_02115 PF01053 Cys/Met metabolism PLP-dependent enzyme KUE09_02120 PF00117 Glutamine amidotransferase class-I KUE09_02125 PF00338 Ribosomal protein S10p/S20e KUE09_02130 PF00297 Ribosomal protein L3 KUE09_02135 PF00573 Ribosomal protein L4/L1 family KUE09_02140 PF00276 Ribosomal protein L23 KUE09_02145 PF00181 Ribosomal Proteins L2, RNA binding domain KUE09_02145 PF03947 Ribosomal Proteins L2, C-terminal domain KUE09_02150 PF00203 Ribosomal protein S19 KUE09_02155 PF00237 Ribosomal protein L22p/L17e KUE09_02160 PF00189 Ribosomal protein S3, C-terminal domain KUE09_02160 PF07650 KH domain KUE09_02165 PF00252 Ribosomal protein L16p/L10e KUE09_02170 PF00831 Ribosomal L29 protein KUE09_02175 PF00366 Ribosomal protein S17 KUE09_02180 PF00238 Ribosomal protein L14p/L23e KUE09_02185 PF00467 KOW motif KUE09_02185 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 KUE09_02190 PF00281 Ribosomal protein L5 KUE09_02190 PF00673 ribosomal L5P family C-terminus KUE09_02195 PF00253 Ribosomal protein S14p/S29e KUE09_02200 PF00410 Ribosomal protein S8 KUE09_02205 PF00347 Ribosomal protein L6 KUE09_02210 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast KUE09_02215 PF03719 Ribosomal protein S5, C-terminal domain KUE09_02215 PF00333 Ribosomal protein S5, N-terminal domain KUE09_02220 PF00327 Ribosomal protein L30p/L7e KUE09_02225 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A KUE09_02230 PF00344 SecY translocase KUE09_02235 PF00444 Ribosomal protein L36 KUE09_02240 PF00416 Ribosomal protein S13/S18 KUE09_02245 PF00411 Ribosomal protein S11 KUE09_02250 PF01479 S4 domain KUE09_02250 PF00163 Ribosomal protein S4/S9 N-terminal domain KUE09_02255 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain KUE09_02255 PF01000 RNA polymerase Rpb3/RpoA insert domain KUE09_02255 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain KUE09_02260 PF01196 Ribosomal protein L17 KUE09_02265 PF00743 Flavin-binding monooxygenase-like KUE09_02270 PF00441 Acyl-CoA dehydrogenase, C-terminal domain KUE09_02270 PF02770 Acyl-CoA dehydrogenase, middle domain KUE09_02270 PF02771 Acyl-CoA dehydrogenase, N-terminal domain KUE09_02275 PF03937 Flavinator of succinate dehydrogenase KUE09_02305 PF09526 Probable metal-binding protein (DUF2387) KUE09_02310 PF01432 Peptidase family M3 KUE09_02315 PF00575 S1 RNA binding domain KUE09_02315 PF08206 Ribonuclease B OB domain KUE09_02315 PF08461 Ribonuclease R winged-helix domain KUE09_02315 PF17876 Cold shock domain KUE09_02315 PF00773 RNB domain KUE09_02360 PF01557 Fumarylacetoacetate (FAA) hydrolase family KUE09_02365 PF12833 Helix-turn-helix domain KUE09_02370 PF00892 EamA-like transporter family KUE09_02375 PF03631 Virulence factor BrkB KUE09_02380 PF03358 NADPH-dependent FMN reductase KUE09_02405 PF02130 Uncharacterized protein family UPF0054 KUE09_02410 PF02562 PhoH-like protein KUE09_02415 PF04055 Radical SAM superfamily KUE09_02415 PF01938 TRAM domain KUE09_02415 PF00919 Uncharacterized protein family UPF0004 KUE09_02420 PF01551 Peptidase family M23 KUE09_02420 PF10145 Phage-related minor tail protein KUE09_02420 PF01464 Transglycosylase SLT domain KUE09_02430 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain KUE09_02430 PF00056 lactate/malate dehydrogenase, NAD binding domain KUE09_02450 PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ KUE09_02455 PF01066 CDP-alcohol phosphatidyltransferase KUE09_02490 PF00309 Sigma-54 factor, Activator interacting domain (AID) KUE09_02490 PF04552 Sigma-54, DNA binding domain KUE09_02490 PF04963 Sigma-54 factor, core binding domain KUE09_02495 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein KUE09_02500 PF01722 BolA-like protein KUE09_02505 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) KUE09_02510 PF01634 ATP phosphoribosyltransferase KUE09_02515 PF00815 Histidinol dehydrogenase KUE09_02520 PF00155 Aminotransferase class I and II KUE09_02525 PF04715 Anthranilate synthase component I, N terminal region KUE09_02525 PF00425 chorismate binding enzyme KUE09_02565 PF00293 NUDIX domain KUE09_02570 PF00132 Bacterial transferase hexapeptide (six repeats) KUE09_02575 PF00814 Glycoprotease family KUE09_02580 PF04445 Putative SAM-dependent methyltransferase KUE09_02590 PF00756 Putative esterase KUE09_02600 PF00834 Ribulose-phosphate 3 epimerase family KUE09_02615 PF00394 Multicopper oxidase KUE09_02615 PF07731 Multicopper oxidase KUE09_02615 PF07732 Multicopper oxidase KUE09_02630 PF00893 Small Multidrug Resistance protein KUE09_02635 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain KUE09_02635 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain KUE09_02640 PF01960 ArgJ family KUE09_02645 PF02445 Quinolinate synthetase A protein KUE09_02670 PF00962 Adenosine/AMP deaminase KUE09_02680 PF08240 Alcohol dehydrogenase GroES-like domain KUE09_02680 PF00107 Zinc-binding dehydrogenase KUE09_02685 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KUE09_02685 PF03466 LysR substrate binding domain KUE09_02690 PF00441 Acyl-CoA dehydrogenase, C-terminal domain KUE09_02690 PF02770 Acyl-CoA dehydrogenase, middle domain KUE09_02690 PF02771 Acyl-CoA dehydrogenase, N-terminal domain KUE09_02695 PF07690 Major Facilitator Superfamily KUE09_02700 PF02515 CoA-transferase family III KUE09_02710 PF14537 Cytochrome c3 KUE09_02710 PF00890 FAD binding domain KUE09_02715 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KUE09_02715 PF03466 LysR substrate binding domain KUE09_02725 PF07690 Major Facilitator Superfamily KUE09_02730 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KUE09_02730 PF03466 LysR substrate binding domain KUE09_02740 PF01546 Peptidase family M20/M25/M40 KUE09_02740 PF07687 Peptidase dimerisation domain KUE09_02745 PF12833 Helix-turn-helix domain KUE09_02745 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term KUE09_02755 PF01810 LysE type translocator KUE09_02760 PF03466 LysR substrate binding domain KUE09_02760 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KUE09_02770 PF08267 Cobalamin-independent synthase, N-terminal domain KUE09_02770 PF01717 Cobalamin-independent synthase, Catalytic domain KUE09_02775 PF01613 Flavin reductase like domain KUE09_02780 PF16925 Tetracyclin repressor-like, C-terminal domain KUE09_02780 PF00440 Bacterial regulatory proteins, tetR family KUE09_02800 PF02567 Phenazine biosynthesis-like protein KUE09_02815 PF00268 Ribonucleotide reductase, small chain KUE09_02825 PF00317 Ribonucleotide reductase, all-alpha domain KUE09_02825 PF03477 ATP cone domain KUE09_02825 PF02867 Ribonucleotide reductase, barrel domain KUE09_02835 PF00486 Transcriptional regulatory protein, C terminal KUE09_02835 PF00072 Response regulator receiver domain KUE09_02840 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KUE09_02840 PF00512 His Kinase A (phospho-acceptor) domain KUE09_02840 PF00672 HAMP domain KUE09_02850 PF17151 Periplasmic sensor domain KUE09_02850 PF00990 Diguanylate cyclase, GGDEF domain KUE09_02855 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 KUE09_02860 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit KUE09_02865 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit KUE09_02865 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit KUE09_02875 PF10531 SLBB domain KUE09_02875 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit KUE09_02875 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region KUE09_02880 PF04879 Molybdopterin oxidoreductase Fe4S4 domain KUE09_02880 PF00384 Molybdopterin oxidoreductase KUE09_02880 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region KUE09_02885 PF00146 NADH dehydrogenase KUE09_02890 PF12838 4Fe-4S dicluster domain KUE09_02895 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 KUE09_02900 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L KUE09_02905 PF00361 Proton-conducting membrane transporter KUE09_02905 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus KUE09_02910 PF00361 Proton-conducting membrane transporter KUE09_02915 PF00361 Proton-conducting membrane transporter KUE09_02925 PF00313 'Cold-shock' DNA-binding domain KUE09_02930 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KUE09_02930 PF03466 LysR substrate binding domain KUE09_02935 PF00970 Oxidoreductase FAD-binding domain KUE09_02935 PF00175 Oxidoreductase NAD-binding domain KUE09_02950 PF05552 Conserved TM helix KUE09_02965 PF00291 Pyridoxal-phosphate dependent enzyme KUE09_02970 PF13533 Biotin-lipoyl like KUE09_02995 PF01588 Putative tRNA binding domain KUE09_02995 PF09334 tRNA synthetases class I (M) KUE09_03005 PF10609 NUBPL iron-transfer P-loop NTPase KUE09_03015 PF01048 Phosphorylase superfamily KUE09_03030 PF00692 dUTPase KUE09_03060 PF01207 Dihydrouridine synthase (Dus) KUE09_03070 PF02978 Signal peptide binding domain KUE09_03070 PF02881 SRP54-type protein, helical bundle domain KUE09_03070 PF00448 SRP54-type protein, GTPase domain KUE09_03075 PF03309 Type III pantothenate kinase KUE09_03085 PF01925 Sulfite exporter TauE/SafE KUE09_03095 PF02463 RecF/RecN/SMC N terminal domain KUE09_03095 PF06470 SMC proteins Flexible Hinge Domain KUE09_03105 PF12826 Helix-hairpin-helix motif KUE09_03105 PF03119 NAD-dependent DNA ligase C4 zinc finger domain KUE09_03105 PF01653 NAD-dependent DNA ligase adenylation domain KUE09_03105 PF00533 BRCA1 C Terminus (BRCT) domain KUE09_03105 PF03120 NAD-dependent DNA ligase OB-fold domain KUE09_03110 PF00210 Ferritin-like domain KUE09_03115 PF07690 Major Facilitator Superfamily KUE09_03120 PF00982 Glycosyltransferase family 20 KUE09_03125 PF02358 Trehalose-phosphatase KUE09_03130 PF08241 Methyltransferase domain KUE09_03130 PF12697 Alpha/beta hydrolase family KUE09_03135 PF00202 Aminotransferase class-III KUE09_03135 PF06968 Biotin and Thiamin Synthesis associated domain KUE09_03135 PF04055 Radical SAM superfamily KUE09_03140 PF00155 Aminotransferase class I and II KUE09_03155 PF01479 S4 domain KUE09_03155 PF00849 RNA pseudouridylate synthase KUE09_03160 PF04079 Segregation and condensation complex subunit ScpB KUE09_03165 PF02616 Segregation and condensation protein ScpA KUE09_03170 PF01300 Telomere recombination KUE09_03175 PF04315 Elongation factor P hydroxylase KUE09_03180 PF02620 Large ribosomal RNA subunit accumulation protein YceD KUE09_03185 PF01783 Ribosomal L32p protein family KUE09_03190 PF00698 Acyl transferase domain KUE09_03200 PF00550 Phosphopantetheine attachment site KUE09_03205 PF01476 LysM domain KUE09_03205 PF04972 BON domain KUE09_03210 PF02581 Thiamine monophosphate synthase KUE09_03210 PF08543 Phosphomethylpyrimidine kinase KUE09_03210 PF03070 TENA/THI-4/PQQC family KUE09_03220 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase KUE09_03235 PF02261 Aspartate decarboxylase KUE09_03240 PF01195 Peptidyl-tRNA hydrolase KUE09_03245 PF01386 Ribosomal L25p family KUE09_03250 PF14572 Phosphoribosyl synthetase-associated domain KUE09_03250 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase KUE09_03275 PF08544 GHMP kinases C terminal KUE09_03275 PF00288 GHMP kinases N terminal domain KUE09_03280 PF03550 Outer membrane lipoprotein LolB KUE09_03290 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain KUE09_03290 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain KUE09_03290 PF01488 Shikimate / quinate 5-dehydrogenase KUE09_03295 PF01807 CHC2 zinc finger KUE09_03295 PF10410 DnaB-helicase binding domain of primase KUE09_03295 PF08278 DNA primase DnaG DnaB-binding KUE09_03295 PF08275 DNA primase catalytic core, N-terminal domain KUE09_03300 PF13525 Outer membrane lipoprotein KUE09_03305 PF01479 S4 domain KUE09_03305 PF00849 RNA pseudouridylate synthase KUE09_03310 PF02578 Multi-copper polyphenol oxidoreductase laccase KUE09_03315 PF03358 NADPH-dependent FMN reductase KUE09_03320 PF01668 SmpB protein KUE09_03325 PF01467 Cytidylyltransferase-like KUE09_03330 PF00037 4Fe-4S binding domain KUE09_03350 PF03466 LysR substrate binding domain KUE09_03350 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KUE09_03355 PF00180 Isocitrate/isopropylmalate dehydrogenase KUE09_03360 PF02028 BCCT, betaine/carnitine/choline family transporter KUE09_03365 PF07859 alpha/beta hydrolase fold KUE09_03370 PF00848 Ring hydroxylating alpha subunit (catalytic domain) KUE09_03370 PF00355 Rieske [2Fe-2S] domain KUE09_03375 PF00171 Aldehyde dehydrogenase family KUE09_03380 PF00970 Oxidoreductase FAD-binding domain KUE09_03380 PF00175 Oxidoreductase NAD-binding domain KUE09_03380 PF00111 2Fe-2S iron-sulfur cluster binding domain KUE09_03395 PF02540 NAD synthase KUE09_03395 PF00795 Carbon-nitrogen hydrolase KUE09_03405 PF05726 Pirin C-terminal cupin domain KUE09_03405 PF02678 Pirin KUE09_03410 PF03653 Uncharacterised protein family (UPF0093) KUE09_03415 PF02801 Beta-ketoacyl synthase, C-terminal domain KUE09_03415 PF00109 Beta-ketoacyl synthase, N-terminal domain KUE09_03425 PF00164 Ribosomal protein S12/S23 KUE09_03430 PF00177 Ribosomal protein S7p/S5e KUE09_03435 PF03764 Elongation factor G, domain IV KUE09_03435 PF14492 Elongation Factor G, domain II KUE09_03435 PF00679 Elongation factor G C-terminus KUE09_03435 PF00009 Elongation factor Tu GTP binding domain KUE09_03435 PF03144 Elongation factor Tu domain 2 KUE09_03440 PF00009 Elongation factor Tu GTP binding domain KUE09_03440 PF03144 Elongation factor Tu domain 2 KUE09_03440 PF03143 Elongation factor Tu C-terminal domain KUE09_03455 PF00583 Acetyltransferase (GNAT) family KUE09_03460 PF04377 Arginine-tRNA-protein transferase, C terminus KUE09_03460 PF04376 Arginine-tRNA-protein transferase, N terminus KUE09_03465 PF03588 Leucyl/phenylalanyl-tRNA protein transferase KUE09_03470 PF07992 Pyridine nucleotide-disulphide oxidoreductase KUE09_03475 PF01580 FtsK/SpoIIIE family KUE09_03475 PF17854 FtsK alpha domain KUE09_03475 PF09397 Ftsk gamma domain KUE09_03475 PF13491 4TM region of DNA translocase FtsK/SpoIIIE KUE09_03480 PF01810 LysE type translocator KUE09_03495 PF03776 Septum formation topological specificity factor MinE KUE09_03500 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain KUE09_03505 PF03775 Septum formation inhibitor MinC, C-terminal domain KUE09_03515 PF01553 Acyltransferase KUE09_03520 PF00691 OmpA family KUE09_03520 PF13488 Glycine zipper KUE09_03525 PF13361 UvrD-like helicase C-terminal domain KUE09_03525 PF00580 UvrD/REP helicase N-terminal domain KUE09_03530 PF00692 dUTPase KUE09_03535 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I KUE09_03535 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II KUE09_03535 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III KUE09_03535 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain KUE09_03540 PF00696 Amino acid kinase family KUE09_03550 PF13230 Glutamine amidotransferases class-II KUE09_03555 PF01814 Hemerythrin HHE cation binding domain KUE09_03565 PF03658 RnfH family Ubiquitin KUE09_03570 PF04355 SmpA / OmlA family KUE09_03575 PF01475 Ferric uptake regulator family KUE09_03580 PF00437 Type II/IV secretion system protein KUE09_03585 PF00437 Type II/IV secretion system protein KUE09_03590 PF01168 Alanine racemase, N-terminal domain KUE09_03600 PF00149 Calcineurin-like phosphoesterase KUE09_03600 PF12320 Type 5 capsule protein repressor C-terminal domain KUE09_03620 PF08338 Domain of unknown function (DUF1731) KUE09_03620 PF01370 NAD dependent epimerase/dehydratase family KUE09_03625 PF01266 FAD dependent oxidoreductase KUE09_03630 PF00490 Delta-aminolevulinic acid dehydratase KUE09_03635 PF03061 Thioesterase superfamily KUE09_03640 PF13533 Biotin-lipoyl like KUE09_03645 PF07690 Major Facilitator Superfamily KUE09_03935 PF15919 HicB_like antitoxin of bacterial toxin-antitoxin system KUE09_03995 PF00589 Phage integrase family KUE09_03995 PF13356 Arm DNA-binding domain KUE09_04020 PF13438 Domain of unknown function (DUF4113) KUE09_04020 PF00817 impB/mucB/samB family KUE09_04020 PF11799 impB/mucB/samB family C-terminal domain KUE09_04025 PF00717 Peptidase S24-like KUE09_04085 PF02384 N-6 DNA Methylase KUE09_04085 PF12161 HsdM N-terminal domain KUE09_04095 PF08463 EcoEI R protein C-terminal KUE09_04095 PF00271 Helicase conserved C-terminal domain KUE09_04095 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) KUE09_04095 PF04851 Type III restriction enzyme, res subunit KUE09_04105 PF00083 Sugar (and other) transporter KUE09_04110 PF00701 Dihydrodipicolinate synthetase family KUE09_04120 PF04542 Sigma-70 region 2 KUE09_04120 PF08281 Sigma-70, region 4 KUE09_04130 PF07715 TonB-dependent Receptor Plug Domain KUE09_04130 PF00593 TonB dependent receptor KUE09_04140 PF04575 Protein of unknown function (DUF560) KUE09_04150 PF01126 Heme oxygenase KUE09_04175 PF13520 Amino acid permease KUE09_04180 PF02574 Homocysteine S-methyltransferase KUE09_04190 PF06039 Malate:quinone oxidoreductase (Mqo) KUE09_04195 PF05199 GMC oxidoreductase KUE09_04195 PF00732 GMC oxidoreductase KUE09_04200 PF00171 Aldehyde dehydrogenase family KUE09_04205 PF13977 BetI-type transcriptional repressor, C-terminal KUE09_04205 PF00440 Bacterial regulatory proteins, tetR family KUE09_04210 PF02028 BCCT, betaine/carnitine/choline family transporter KUE09_04215 PF02028 BCCT, betaine/carnitine/choline family transporter KUE09_04225 PF03061 Thioesterase superfamily KUE09_04235 PF02492 CobW/HypB/UreG, nucleotide-binding domain KUE09_04235 PF07683 Cobalamin synthesis protein cobW C-terminal domain KUE09_04240 PF00375 Sodium:dicarboxylate symporter family KUE09_04245 PF07152 YaeQ protein KUE09_04250 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase KUE09_04255 PF14883 Hypothetical glycosyl hydrolase family 13 KUE09_04255 PF01522 Polysaccharide deacetylase KUE09_04260 PF00535 Glycosyl transferase family 2 KUE09_04270 PF00378 Enoyl-CoA hydratase/isomerase KUE09_04285 PF09339 IclR helix-turn-helix domain KUE09_04285 PF01614 Bacterial transcriptional regulator KUE09_04290 PF00355 Rieske [2Fe-2S] domain KUE09_04300 PF00355 Rieske [2Fe-2S] domain KUE09_04310 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily KUE09_04315 PF07992 Pyridine nucleotide-disulphide oxidoreductase KUE09_04315 PF14759 Reductase C-terminal KUE09_04320 PF07690 Major Facilitator Superfamily KUE09_04330 PF12697 Alpha/beta hydrolase family KUE09_04340 PF01958 Domain of unknown function DUF108 KUE09_04340 PF03447 Homoserine dehydrogenase, NAD binding domain KUE09_04345 PF00171 Aldehyde dehydrogenase family KUE09_04350 PF00205 Thiamine pyrophosphate enzyme, central domain KUE09_04350 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain KUE09_04350 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain KUE09_04360 PF07690 Major Facilitator Superfamily KUE09_04365 PF01327 Polypeptide deformylase KUE09_04370 PF04960 Glutaminase KUE09_04375 PF02311 AraC-like ligand binding domain KUE09_04375 PF12833 Helix-turn-helix domain KUE09_04380 PF07690 Major Facilitator Superfamily KUE09_04385 PF01263 Aldose 1-epimerase KUE09_04395 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KUE09_04395 PF03466 LysR substrate binding domain KUE09_04405 PF07690 Major Facilitator Superfamily KUE09_04410 PF00456 Transketolase, thiamine diphosphate binding domain KUE09_04415 PF02780 Transketolase, C-terminal domain KUE09_04415 PF02779 Transketolase, pyrimidine binding domain KUE09_04420 PF02310 B12 binding domain KUE09_04420 PF02607 B12 binding domain KUE09_04420 PF02965 Vitamin B12 dependent methionine synthase, activation domain KUE09_04420 PF00809 Pterin binding enzyme KUE09_04420 PF02574 Homocysteine S-methyltransferase KUE09_04425 PF01384 Phosphate transporter family KUE09_04430 PF00291 Pyridoxal-phosphate dependent enzyme KUE09_04445 PF03781 Sulfatase-modifying factor enzyme 1 KUE09_04450 PF00884 Sulfatase KUE09_04460 PF01521 Iron-sulphur cluster biosynthesis KUE09_04460 PF01106 NifU-like domain KUE09_04465 PF07715 TonB-dependent Receptor Plug Domain KUE09_04465 PF00593 TonB dependent receptor KUE09_04475 PF00561 alpha/beta hydrolase fold KUE09_04480 PF00484 Carbonic anhydrase KUE09_04485 PF13472 GDSL-like Lipase/Acylhydrolase family KUE09_04490 PF00005 ABC transporter KUE09_04500 PF01694 Rhomboid family KUE09_04505 PF00912 Transglycosylase KUE09_04510 PF02503 Polyphosphate kinase middle domain KUE09_04510 PF13090 Polyphosphate kinase C-terminal domain 2 KUE09_04510 PF17941 Polyphosphate kinase C-terminal domain 1 KUE09_04510 PF13089 Polyphosphate kinase N-terminal domain KUE09_04525 PF03466 LysR substrate binding domain KUE09_04525 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KUE09_04530 PF00561 alpha/beta hydrolase fold KUE09_04535 PF18113 Rubredoxin binding C-terminal domain KUE09_04535 PF07992 Pyridine nucleotide-disulphide oxidoreductase KUE09_04540 PF00301 Rubredoxin KUE09_04555 PF01336 OB-fold nucleic acid binding domain KUE09_04555 PF00152 tRNA synthetases class II (D, K and N) KUE09_04560 PF14052 Capsule assembly protein Wzi KUE09_04570 PF01507 Phosphoadenosine phosphosulfate reductase family KUE09_04575 PF00009 Elongation factor Tu GTP binding domain KUE09_04590 PF03600 Citrate transporter KUE09_04595 PF00571 CBS domain KUE09_04595 PF01595 Cyclin M transmembrane N-terminal domain KUE09_04595 PF03471 Transporter associated domain KUE09_04600 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KUE09_04600 PF03466 LysR substrate binding domain KUE09_04605 PF00463 Isocitrate lyase family KUE09_04620 PF01774 UreD urease accessory protein KUE09_04625 PF00547 Urease, gamma subunit KUE09_04630 PF00699 Urease beta subunit KUE09_04635 PF01979 Amidohydrolase family KUE09_04635 PF00449 Urease alpha-subunit, N-terminal domain KUE09_04640 PF02814 UreE urease accessory protein, N-terminal domain KUE09_04640 PF05194 UreE urease accessory protein, C-terminal domain KUE09_04645 PF01730 UreF KUE09_04650 PF02492 CobW/HypB/UreG, nucleotide-binding domain KUE09_04665 PF03717 Penicillin-binding Protein dimerisation domain KUE09_04665 PF00905 Penicillin binding protein transpeptidase domain KUE09_04680 PF05191 Adenylate kinase, active site lid KUE09_04690 PF10576 Iron-sulfur binding domain of endonuclease III KUE09_04690 PF00633 Helix-hairpin-helix motif KUE09_04690 PF00730 HhH-GPD superfamily base excision DNA repair protein KUE09_04695 PF04060 Putative Fe-S cluster KUE09_04700 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain KUE09_04700 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase KUE09_04710 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase KUE09_04715 PF02590 Predicted SPOUT methyltransferase KUE09_04720 PF02190 ATP-dependent protease La (LON) substrate-binding domain KUE09_04720 PF05362 Lon protease (S16) C-terminal proteolytic domain KUE09_04720 PF00004 ATPase family associated with various cellular activities (AAA) KUE09_04725 PF01812 5-formyltetrahydrofolate cyclo-ligase family KUE09_04765 PF05195 Aminopeptidase P, N-terminal domain KUE09_04765 PF00557 Metallopeptidase family M24 KUE09_04770 PF01494 FAD binding domain KUE09_04775 PF01494 FAD binding domain KUE09_04785 PF13411 MerR HTH family regulatory protein KUE09_04795 PF01810 LysE type translocator KUE09_04800 PF03466 LysR substrate binding domain KUE09_04800 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KUE09_04810 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases KUE09_04815 PF02021 Uncharacterised protein family UPF0102 KUE09_04820 PF04972 BON domain KUE09_04830 PF09297 NADH pyrophosphatase zinc ribbon domain KUE09_04830 PF00293 NUDIX domain KUE09_04840 PF00929 Exonuclease KUE09_04845 PF01476 LysM domain KUE09_04845 PF01464 Transglycosylase SLT domain KUE09_04845 PF01476 LysM domain KUE09_04845 PF01464 Transglycosylase SLT domain KUE09_04850 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle KUE09_04855 PF00528 Binding-protein-dependent transport system inner membrane component KUE09_04860 PF00528 Binding-protein-dependent transport system inner membrane component KUE09_04860 PF12911 N-terminal TM domain of oligopeptide transport permease C KUE09_04865 PF08352 Oligopeptide/dipeptide transporter, C-terminal region KUE09_04865 PF00005 ABC transporter KUE09_04870 PF07992 Pyridine nucleotide-disulphide oxidoreductase KUE09_04870 PF00724 NADH:flavin oxidoreductase / NADH oxidase family KUE09_04880 PF00593 TonB dependent receptor KUE09_04880 PF07715 TonB-dependent Receptor Plug Domain KUE09_04890 PF00929 Exonuclease KUE09_04895 PF01979 Amidohydrolase family KUE09_04900 PF00990 Diguanylate cyclase, GGDEF domain KUE09_04900 PF00360 Phytochrome region KUE09_04900 PF01590 GAF domain KUE09_04900 PF00563 EAL domain KUE09_04905 PF00764 Arginosuccinate synthase KUE09_04915 PF00724 NADH:flavin oxidoreductase / NADH oxidase family KUE09_04915 PF07992 Pyridine nucleotide-disulphide oxidoreductase KUE09_04925 PF03180 NLPA lipoprotein KUE09_04940 PF00884 Sulfatase KUE09_04945 PF03781 Sulfatase-modifying factor enzyme 1 KUE09_04955 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KUE09_04955 PF03466 LysR substrate binding domain KUE09_04960 PF07690 Major Facilitator Superfamily KUE09_04975 PF00171 Aldehyde dehydrogenase family KUE09_04980 PF00465 Iron-containing alcohol dehydrogenase KUE09_04985 PF04444 Catechol dioxygenase N terminus KUE09_04985 PF00775 Dioxygenase KUE09_05000 PF01144 Coenzyme A transferase KUE09_05005 PF01144 Coenzyme A transferase KUE09_05010 PF02803 Thiolase, C-terminal domain KUE09_05010 PF00108 Thiolase, N-terminal domain KUE09_05025 PF03783 Curli production assembly/transport component CsgG KUE09_05035 PF05643 Putative bacterial lipoprotein (DUF799) KUE09_05050 PF00324 Amino acid permease KUE09_05055 PF01266 FAD dependent oxidoreductase KUE09_05060 PF00324 Amino acid permease KUE09_05070 PF07729 FCD domain KUE09_05070 PF00392 Bacterial regulatory proteins, gntR family KUE09_05080 PF00171 Aldehyde dehydrogenase family KUE09_05090 PF00202 Aminotransferase class-III KUE09_05095 PF04958 Arginine N-succinyltransferase beta subunit KUE09_05100 PF00324 Amino acid permease KUE09_05105 PF00171 Aldehyde dehydrogenase family KUE09_05110 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term KUE09_05110 PF12833 Helix-turn-helix domain KUE09_05115 PF00892 EamA-like transporter family KUE09_05120 PF08666 SAF domain KUE09_05120 PF04295 D-galactarate dehydratase / Altronate hydrolase, C terminus KUE09_05125 PF07690 Major Facilitator Superfamily KUE09_05130 PF13378 Enolase C-terminal domain-like KUE09_05135 PF00701 Dihydrodipicolinate synthetase family KUE09_05140 PF00171 Aldehyde dehydrogenase family KUE09_05145 PF07729 FCD domain KUE09_05145 PF00392 Bacterial regulatory proteins, gntR family KUE09_05150 PF07519 Tannase and feruloyl esterase KUE09_05165 PF03573 outer membrane porin, OprD family KUE09_05170 PF02771 Acyl-CoA dehydrogenase, N-terminal domain KUE09_05170 PF02770 Acyl-CoA dehydrogenase, middle domain KUE09_05170 PF00441 Acyl-CoA dehydrogenase, C-terminal domain KUE09_05180 PF00171 Aldehyde dehydrogenase family KUE09_05185 PF00378 Enoyl-CoA hydratase/isomerase KUE09_05190 PF07690 Major Facilitator Superfamily KUE09_05205 PF00175 Oxidoreductase NAD-binding domain KUE09_05205 PF00111 2Fe-2S iron-sulfur cluster binding domain KUE09_05210 PF00355 Rieske [2Fe-2S] domain KUE09_05220 PF03781 Sulfatase-modifying factor enzyme 1 KUE09_05225 PF00884 Sulfatase KUE09_05230 PF07690 Major Facilitator Superfamily KUE09_05235 PF03573 outer membrane porin, OprD family KUE09_05240 PF05199 GMC oxidoreductase KUE09_05245 PF07859 alpha/beta hydrolase fold KUE09_05250 PF00106 short chain dehydrogenase KUE09_05255 PF00743 Flavin-binding monooxygenase-like KUE09_05260 PF12833 Helix-turn-helix domain KUE09_05265 PF04072 Leucine carboxyl methyltransferase KUE09_05270 PF00743 Flavin-binding monooxygenase-like KUE09_05275 PF00106 short chain dehydrogenase KUE09_05285 PF17932 Tetracyclin repressor-like, C-terminal domain KUE09_05285 PF00440 Bacterial regulatory proteins, tetR family KUE09_05290 PF02678 Pirin KUE09_05290 PF17954 Quercetinase C-terminal cupin domain KUE09_05300 PF00106 short chain dehydrogenase KUE09_05305 PF00743 Flavin-binding monooxygenase-like KUE09_05315 PF00860 Permease family KUE09_05320 PF00962 Adenosine/AMP deaminase KUE09_05325 PF01292 Prokaryotic cytochrome b561 KUE09_05335 PF01351 Ribonuclease HII KUE09_05340 PF02599 Global regulator protein family KUE09_05345 PF13840 ACT domain KUE09_05345 PF01842 ACT domain KUE09_05345 PF00696 Amino acid kinase family KUE09_05440 PF03796 DnaB-like helicase C terminal domain KUE09_05440 PF00772 DnaB-like helicase N terminal domain KUE09_05625 PF09669 Phage regulatory protein Rha (Phage_pRha) KUE09_05625 PF10549 ORF11CD3 domain KUE09_05730 PF00817 impB/mucB/samB family KUE09_05730 PF13438 Domain of unknown function (DUF4113) KUE09_05730 PF11799 impB/mucB/samB family C-terminal domain KUE09_05735 PF00717 Peptidase S24-like KUE09_05750 PF00589 Phage integrase family KUE09_05750 PF13356 Arm DNA-binding domain KUE09_05755 PF02272 DHHA1 domain KUE09_05755 PF01411 tRNA synthetases class II (A) KUE09_05755 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain KUE09_05760 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain KUE09_05760 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain KUE09_05765 PF13393 Histidyl-tRNA synthetase KUE09_05770 PF00709 Adenylosuccinate synthetase KUE09_05785 PF00248 Aldo/keto reductase family KUE09_05790 PF00027 Cyclic nucleotide-binding domain KUE09_05790 PF13545 Crp-like helix-turn-helix domain KUE09_05800 PF02566 OsmC-like protein KUE09_05815 PF07724 AAA domain (Cdc48 subfamily) KUE09_05815 PF17871 AAA lid domain KUE09_05815 PF02861 Clp amino terminal domain, pathogenicity island component KUE09_05815 PF10431 C-terminal, D2-small domain, of ClpB protein KUE09_05815 PF00004 ATPase family associated with various cellular activities (AAA) KUE09_05830 PF01170 Putative RNA methylase family UPF0020 KUE09_05830 PF02926 THUMP domain KUE09_05830 PF10672 S-adenosylmethionine-dependent methyltransferase KUE09_05840 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain KUE09_05840 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain KUE09_05845 PF01979 Amidohydrolase family KUE09_05850 PF00691 OmpA family KUE09_05850 PF13488 Glycine zipper KUE09_05860 PF00043 Glutathione S-transferase, C-terminal domain KUE09_05860 PF13417 Glutathione S-transferase, N-terminal domain KUE09_05865 PF02390 Putative methyltransferase KUE09_05875 PF00043 Glutathione S-transferase, C-terminal domain KUE09_05875 PF02798 Glutathione S-transferase, N-terminal domain KUE09_05885 PF07992 Pyridine nucleotide-disulphide oxidoreductase KUE09_05885 PF13192 Thioredoxin domain KUE09_05905 PF10417 C-terminal domain of 1-Cys peroxiredoxin KUE09_05905 PF00578 AhpC/TSA family KUE09_05910 PF00270 DEAD/DEAH box helicase KUE09_05910 PF00271 Helicase conserved C-terminal domain KUE09_05910 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold KUE09_05910 PF04408 Helicase associated domain (HA2) KUE09_05910 PF11898 Domain of unknown function (DUF3418) KUE09_05915 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal KUE09_05915 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III KUE09_05925 PF07690 Major Facilitator Superfamily KUE09_05930 PF03594 Benzoate membrane transport protein KUE09_05935 PF00106 short chain dehydrogenase KUE09_05940 PF00970 Oxidoreductase FAD-binding domain KUE09_05940 PF00175 Oxidoreductase NAD-binding domain KUE09_05940 PF00111 2Fe-2S iron-sulfur cluster binding domain KUE09_05945 PF00866 Ring hydroxylating beta subunit KUE09_05950 PF00355 Rieske [2Fe-2S] domain KUE09_05950 PF00848 Ring hydroxylating alpha subunit (catalytic domain) KUE09_05960 PF03466 LysR substrate binding domain KUE09_05960 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KUE09_05970 PF00175 Oxidoreductase NAD-binding domain KUE09_05970 PF00111 2Fe-2S iron-sulfur cluster binding domain KUE09_05970 PF00970 Oxidoreductase FAD-binding domain KUE09_05980 PF02332 Methane/Phenol/Toluene Hydroxylase KUE09_05980 PF04945 YHS domain KUE09_05985 PF02406 MmoB/DmpM family KUE09_05990 PF02332 Methane/Phenol/Toluene Hydroxylase KUE09_05995 PF06099 Phenol hydroxylase subunit KUE09_06000 PF02954 Bacterial regulatory protein, Fis family KUE09_06000 PF02830 V4R domain KUE09_06000 PF06505 Activator of aromatic catabolism KUE09_06000 PF00158 Sigma-54 interaction domain KUE09_06010 PF00403 Heavy-metal-associated domain KUE09_06015 PF00376 MerR family regulatory protein KUE09_06015 PF09278 MerR, DNA binding KUE09_06050 PF02601 Exonuclease VII, large subunit KUE09_06050 PF13742 OB-fold nucleic acid binding domain KUE09_06080 PF01810 LysE type translocator KUE09_06085 PF00313 'Cold-shock' DNA-binding domain KUE09_06095 PF03807 NADP oxidoreductase coenzyme F420-dependent KUE09_06095 PF14748 Pyrroline-5-carboxylate reductase dimerisation KUE09_06120 PF07690 Major Facilitator Superfamily KUE09_06125 PF01638 HxlR-like helix-turn-helix KUE09_06195 PF01555 DNA methylase KUE09_06200 PF01726 LexA DNA binding domain KUE09_06200 PF00717 Peptidase S24-like KUE09_06300 PF06381 Protein of unknown function (DUF1073) KUE09_06320 PF09979 Uncharacterized protein conserved in bacteria (DUF2213) KUE09_06450 PF00589 Phage integrase family KUE09_06460 PF01406 tRNA synthetases class I (C) catalytic domain KUE09_06460 PF09190 DALR domain KUE09_06465 PF00571 CBS domain KUE09_06465 PF01380 SIS domain KUE09_06480 PF03968 OstA-like protein KUE09_06485 PF00005 ABC transporter KUE09_06485 PF12399 Branched-chain amino acid ATP-binding cassette transporter KUE09_06490 PF02321 Outer membrane efflux protein KUE09_06495 PF00664 ABC transporter transmembrane region KUE09_06495 PF00005 ABC transporter KUE09_06495 PF03412 Peptidase C39 family KUE09_06505 PF01205 Uncharacterized protein family UPF0029 KUE09_06510 PF00132 Bacterial transferase hexapeptide (six repeats) KUE09_06520 PF01596 O-methyltransferase KUE09_06530 PF11953 Domain of unknown function (DUF3470) KUE09_06530 PF00037 4Fe-4S binding domain KUE09_06540 PF05188 MutS domain II KUE09_06540 PF05192 MutS domain III KUE09_06540 PF05190 MutS family domain IV KUE09_06540 PF00488 MutS domain V KUE09_06540 PF01624 MutS domain I KUE09_06545 PF01037 Lrp/AsnC ligand binding domain KUE09_06550 PF00892 EamA-like transporter family KUE09_06555 PF00563 EAL domain KUE09_06555 PF00990 Diguanylate cyclase, GGDEF domain KUE09_06555 PF03707 Bacterial signalling protein N terminal repeat KUE09_06560 PF03279 Bacterial lipid A biosynthesis acyltransferase KUE09_06565 PF01544 CorA-like Mg2+ transporter protein KUE09_06580 PF07690 Major Facilitator Superfamily KUE09_06600 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain KUE09_06600 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain KUE09_06620 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KUE09_06620 PF03466 LysR substrate binding domain KUE09_06625 PF01566 Natural resistance-associated macrophage protein KUE09_06630 PF03746 LamB/YcsF family KUE09_06635 PF07286 Protein of unknown function (DUF1445) KUE09_06645 PF02785 Biotin carboxylase C-terminal domain KUE09_06645 PF00289 Biotin carboxylase, N-terminal domain KUE09_06645 PF00364 Biotin-requiring enzyme KUE09_06645 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain KUE09_06650 PF00654 Voltage gated chloride channel KUE09_06655 PF08479 POTRA domain, ShlB-type KUE09_06655 PF17287 POTRA domain KUE09_06655 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB KUE09_06660 PF13018 Extended Signal Peptide of Type V secretion system KUE09_06660 PF13332 Hemagglutinin repeat KUE09_06660 PF05860 haemagglutination activity domain KUE09_06660 PF04829 Pre-toxin domain with VENN motif KUE09_06670 PF00440 Bacterial regulatory proteins, tetR family KUE09_06680 PF08240 Alcohol dehydrogenase GroES-like domain KUE09_06680 PF13823 Alcohol dehydrogenase GroES-associated KUE09_06680 PF00107 Zinc-binding dehydrogenase KUE09_06695 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain KUE09_06695 PF02785 Biotin carboxylase C-terminal domain KUE09_06695 PF00289 Biotin carboxylase, N-terminal domain KUE09_06700 PF02525 Flavodoxin-like fold KUE09_06705 PF01638 HxlR-like helix-turn-helix KUE09_06715 PF08753 NikR C terminal nickel binding domain KUE09_06715 PF01402 Ribbon-helix-helix protein, copG family KUE09_06720 PF01425 Amidase KUE09_06725 PF00497 Bacterial extracellular solute-binding proteins, family 3 KUE09_06730 PF00005 ABC transporter KUE09_06745 PF10106 Uncharacterized protein conserved in bacteria (DUF2345) KUE09_06745 PF13296 Putative type VI secretion system Rhs element Vgr KUE09_06745 PF04717 Type VI secretion system, phage-baseplate injector KUE09_06800 PF05943 Type VI secretion protein, EvpB/VC_A0108, tail sheath KUE09_06815 PF05947 Type VI secretion system, TssF KUE09_06830 PF06744 Type VI secretion protein IcmF C-terminal KUE09_06830 PF06761 Intracellular multiplication and human macrophage-killing KUE09_06830 PF14331 ImcF-related N-terminal domain KUE09_06840 PF00691 OmpA family KUE09_06840 PF01389 OmpA-like transmembrane domain KUE09_06850 PF00004 ATPase family associated with various cellular activities (AAA) KUE09_06850 PF07724 AAA domain (Cdc48 subfamily) KUE09_06850 PF17871 AAA lid domain KUE09_06850 PF10431 C-terminal, D2-small domain, of ClpB protein KUE09_06855 PF06812 ImpA, N-terminal, type VI secretion system KUE09_06860 PF05936 Bacterial Type VI secretion, VC_A0110, EvfL, ImpJ, VasE KUE09_06880 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KUE09_06880 PF03466 LysR substrate binding domain KUE09_06890 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region KUE09_06895 PF07690 Major Facilitator Superfamily KUE09_06910 PF02677 Epoxyqueuosine reductase QueH KUE09_06920 PF00376 MerR family regulatory protein KUE09_06920 PF09278 MerR, DNA binding KUE09_06930 PF00701 Dihydrodipicolinate synthetase family KUE09_06940 PF00392 Bacterial regulatory proteins, gntR family KUE09_06945 PF05544 Proline racemase KUE09_06950 PF01266 FAD dependent oxidoreductase KUE09_06960 PF07992 Pyridine nucleotide-disulphide oxidoreductase KUE09_06960 PF04324 BFD-like [2Fe-2S] binding domain KUE09_06970 PF00083 Sugar (and other) transporter KUE09_06975 PF00171 Aldehyde dehydrogenase family KUE09_06980 PF13520 Amino acid permease KUE09_06985 PF03315 Serine dehydratase beta chain KUE09_06985 PF03313 Serine dehydratase alpha chain KUE09_06990 PF00171 Aldehyde dehydrogenase family KUE09_06990 PF01575 MaoC like domain KUE09_06995 PF05138 Phenylacetic acid catabolic protein KUE09_07000 PF06243 Phenylacetic acid degradation B KUE09_07005 PF05138 Phenylacetic acid catabolic protein KUE09_07010 PF01883 Iron-sulfur cluster assembly protein KUE09_07015 PF00175 Oxidoreductase NAD-binding domain KUE09_07015 PF00111 2Fe-2S iron-sulfur cluster binding domain KUE09_07015 PF00970 Oxidoreductase FAD-binding domain KUE09_07020 PF00378 Enoyl-CoA hydratase/isomerase KUE09_07025 PF00378 Enoyl-CoA hydratase/isomerase KUE09_07030 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain KUE09_07030 PF18321 3-hydroxybutyryl-CoA dehydrogenase reduced Rossmann-fold domain KUE09_07030 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain KUE09_07035 PF02803 Thiolase, C-terminal domain KUE09_07035 PF00108 Thiolase, N-terminal domain KUE09_07040 PF14535 AMP-binding enzyme C-terminal domain KUE09_07040 PF00501 AMP-binding enzyme KUE09_07045 PF07848 PaaX-like protein KUE09_07045 PF08223 PaaX-like protein C-terminal domain KUE09_07050 PF00132 Bacterial transferase hexapeptide (six repeats) KUE09_07055 PF03061 Thioesterase superfamily KUE09_07065 PF00271 Helicase conserved C-terminal domain KUE09_07065 PF12344 Ultra-violet resistance protein B KUE09_07065 PF02151 UvrB/uvrC motif KUE09_07065 PF17757 UvrB interaction domain KUE09_07065 PF04851 Type III restriction enzyme, res subunit KUE09_07080 PF12833 Helix-turn-helix domain KUE09_07080 PF06719 AraC-type transcriptional regulator N-terminus KUE09_07095 PF02515 CoA-transferase family III KUE09_07100 PF00682 HMGL-like KUE09_07105 PF07690 Major Facilitator Superfamily KUE09_07110 PF00199 Catalase KUE09_07115 PF01292 Prokaryotic cytochrome b561 KUE09_07135 PF12697 Alpha/beta hydrolase family KUE09_07140 PF01613 Flavin reductase like domain KUE09_07145 PF00296 Luciferase-like monooxygenase KUE09_07150 PF00171 Aldehyde dehydrogenase family KUE09_07160 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin KUE09_07170 PF00171 Aldehyde dehydrogenase family KUE09_07175 PF02627 Carboxymuconolactone decarboxylase family KUE09_07180 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KUE09_07180 PF03466 LysR substrate binding domain KUE09_07185 PF02525 Flavodoxin-like fold KUE09_07190 PF09339 IclR helix-turn-helix domain KUE09_07190 PF01614 Bacterial transcriptional regulator KUE09_07195 PF01494 FAD binding domain KUE09_07200 PF00392 Bacterial regulatory proteins, gntR family KUE09_07200 PF07702 UTRA domain KUE09_07210 PF00005 ABC transporter KUE09_07210 PF08402 TOBE domain KUE09_07215 PF00528 Binding-protein-dependent transport system inner membrane component KUE09_07220 PF01266 FAD dependent oxidoreductase KUE09_07225 PF00266 Aminotransferase class-V KUE09_07230 PF13419 Haloacid dehalogenase-like hydrolase KUE09_07235 PF07690 Major Facilitator Superfamily KUE09_07240 PF02770 Acyl-CoA dehydrogenase, middle domain KUE09_07240 PF02771 Acyl-CoA dehydrogenase, N-terminal domain KUE09_07240 PF00441 Acyl-CoA dehydrogenase, C-terminal domain KUE09_07245 PF02515 CoA-transferase family III KUE09_07250 PF09339 IclR helix-turn-helix domain KUE09_07255 PF00378 Enoyl-CoA hydratase/isomerase KUE09_07260 PF03060 Nitronate monooxygenase KUE09_07265 PF07690 Major Facilitator Superfamily KUE09_07270 PF09339 IclR helix-turn-helix domain KUE09_07275 PF02803 Thiolase, C-terminal domain KUE09_07275 PF00108 Thiolase, N-terminal domain KUE09_07280 PF18321 3-hydroxybutyryl-CoA dehydrogenase reduced Rossmann-fold domain KUE09_07280 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain KUE09_07280 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain KUE09_07290 PF00378 Enoyl-CoA hydratase/isomerase KUE09_07295 PF02770 Acyl-CoA dehydrogenase, middle domain KUE09_07295 PF00441 Acyl-CoA dehydrogenase, C-terminal domain KUE09_07295 PF02771 Acyl-CoA dehydrogenase, N-terminal domain KUE09_07300 PF07690 Major Facilitator Superfamily KUE09_07305 PF01144 Coenzyme A transferase KUE09_07310 PF01144 Coenzyme A transferase KUE09_07320 PF07690 Major Facilitator Superfamily KUE09_07330 PF02770 Acyl-CoA dehydrogenase, middle domain KUE09_07330 PF12806 Acetyl-CoA dehydrogenase C-terminal like KUE09_07330 PF00441 Acyl-CoA dehydrogenase, C-terminal domain KUE09_07330 PF02771 Acyl-CoA dehydrogenase, N-terminal domain KUE09_07345 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KUE09_07345 PF03466 LysR substrate binding domain KUE09_07350 PF00682 HMGL-like KUE09_07355 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain KUE09_07355 PF00364 Biotin-requiring enzyme KUE09_07355 PF02785 Biotin carboxylase C-terminal domain KUE09_07355 PF18140 Propionyl-coenzyme A carboxylase BT domain KUE09_07355 PF00289 Biotin carboxylase, N-terminal domain KUE09_07360 PF00378 Enoyl-CoA hydratase/isomerase KUE09_07365 PF01039 Carboxyl transferase domain KUE09_07370 PF02770 Acyl-CoA dehydrogenase, middle domain KUE09_07370 PF00441 Acyl-CoA dehydrogenase, C-terminal domain KUE09_07370 PF02771 Acyl-CoA dehydrogenase, N-terminal domain KUE09_07375 PF00440 Bacterial regulatory proteins, tetR family KUE09_07380 PF00501 AMP-binding enzyme KUE09_07380 PF13193 AMP-binding enzyme C-terminal domain KUE09_07400 PF03466 LysR substrate binding domain KUE09_07400 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KUE09_07435 PF18146 Damage-inducible protein CinA KH domain KUE09_07435 PF00994 Probable molybdopterin binding domain KUE09_07435 PF02464 Competence-damaged protein KUE09_07445 PF18011 C-terminal domain found in long catalases KUE09_07445 PF00199 Catalase KUE09_07445 PF06628 Catalase-related immune-responsive KUE09_07470 PF00717 Peptidase S24-like KUE09_07480 PF01037 Lrp/AsnC ligand binding domain KUE09_07480 PF13404 AsnC-type helix-turn-helix domain KUE09_07490 PF00072 Response regulator receiver domain KUE09_07490 PF09308 LuxQ, periplasmic KUE09_07490 PF00512 His Kinase A (phospho-acceptor) domain KUE09_07490 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KUE09_07495 PF00072 Response regulator receiver domain KUE09_07500 PF02129 X-Pro dipeptidyl-peptidase (S15 family) KUE09_07510 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KUE09_07510 PF03466 LysR substrate binding domain KUE09_07515 PF07690 Major Facilitator Superfamily KUE09_07530 PF00528 Binding-protein-dependent transport system inner membrane component KUE09_07535 PF00528 Binding-protein-dependent transport system inner membrane component KUE09_07540 PF00005 ABC transporter KUE09_07545 PF00497 Bacterial extracellular solute-binding proteins, family 3 KUE09_07550 PF00497 Bacterial extracellular solute-binding proteins, family 3 KUE09_07560 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KUE09_07560 PF03466 LysR substrate binding domain KUE09_07565 PF01810 LysE type translocator KUE09_07570 PF00266 Aminotransferase class-V KUE09_07580 PF00132 Bacterial transferase hexapeptide (six repeats) KUE09_07585 PF00581 Rhodanese-like domain KUE09_07595 PF03466 LysR substrate binding domain KUE09_07595 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KUE09_07600 PF02798 Glutathione S-transferase, N-terminal domain KUE09_07605 PF02798 Glutathione S-transferase, N-terminal domain KUE09_07605 PF14834 Glutathione S-transferase, C-terminal domain KUE09_07610 PF03466 LysR substrate binding domain KUE09_07610 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KUE09_07615 PF03788 LrgA family KUE09_07620 PF04172 LrgB-like family KUE09_07625 PF00392 Bacterial regulatory proteins, gntR family KUE09_07625 PF00155 Aminotransferase class I and II KUE09_07645 PF00106 short chain dehydrogenase KUE09_07650 PF16957 Malonate decarboxylase, alpha subunit, transporter KUE09_07655 PF01874 ATP:dephospho-CoA triphosphoribosyl transferase KUE09_07660 PF06857 Malonate decarboxylase delta subunit (MdcD) KUE09_07665 PF01039 Carboxyl transferase domain KUE09_07675 PF10620 Phosphoribosyl-dephospho-CoA transferase MdcG KUE09_07680 PF00698 Acyl transferase domain KUE09_07695 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KUE09_07695 PF03466 LysR substrate binding domain KUE09_07700 PF00155 Aminotransferase class I and II KUE09_07700 PF00392 Bacterial regulatory proteins, gntR family KUE09_07710 PF02322 Cytochrome bd terminal oxidase subunit II KUE09_07715 PF01654 Cytochrome bd terminal oxidase subunit I KUE09_07725 PF08028 Acyl-CoA dehydrogenase, C-terminal domain KUE09_07725 PF02771 Acyl-CoA dehydrogenase, N-terminal domain KUE09_07725 PF02770 Acyl-CoA dehydrogenase, middle domain KUE09_07730 PF00296 Luciferase-like monooxygenase KUE09_07735 PF00083 Sugar (and other) transporter KUE09_07745 PF04069 Substrate binding domain of ABC-type glycine betaine transport system KUE09_07750 PF00005 ABC transporter KUE09_07755 PF00528 Binding-protein-dependent transport system inner membrane component KUE09_07760 PF02668 Taurine catabolism dioxygenase TauD, TfdA family KUE09_07765 PF01177 Asp/Glu/Hydantoin racemase KUE09_07770 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin KUE09_07780 PF03466 LysR substrate binding domain KUE09_07780 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KUE09_07790 PF13382 Adenine deaminase C-terminal domain KUE09_07790 PF01979 Amidohydrolase family KUE09_07800 PF03960 ArsC family KUE09_07805 PF01022 Bacterial regulatory protein, arsR family KUE09_07810 PF01758 Sodium Bile acid symporter family KUE09_07815 PF03466 LysR substrate binding domain KUE09_07815 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KUE09_07830 PF13192 Thioredoxin domain KUE09_07830 PF07992 Pyridine nucleotide-disulphide oxidoreductase KUE09_07845 PF00132 Bacterial transferase hexapeptide (six repeats) KUE09_07850 PF00588 SpoU rRNA Methylase family KUE09_07855 PF01336 OB-fold nucleic acid binding domain KUE09_07855 PF17657 Bacterial DNA polymerase III alpha subunit finger domain KUE09_07855 PF14579 Helix-hairpin-helix motif KUE09_07855 PF02811 PHP domain KUE09_07855 PF07733 Bacterial DNA polymerase III alpha NTPase domain KUE09_07860 PF00710 Asparaginase, N-terminal KUE09_07860 PF17763 Glutaminase/Asparaginase C-terminal domain KUE09_07865 PF00375 Sodium:dicarboxylate symporter family KUE09_07870 PF00155 Aminotransferase class I and II KUE09_07875 PF01641 SelR domain KUE09_07880 PF00255 Glutathione peroxidase KUE09_07885 PF12852 Cupin KUE09_07885 PF12833 Helix-turn-helix domain KUE09_07895 PF00155 Aminotransferase class I and II KUE09_07900 PF08335 GlnD PII-uridylyltransferase KUE09_07900 PF01966 HD domain KUE09_07900 PF01909 Nucleotidyltransferase domain KUE09_07905 PF02222 ATP-grasp domain KUE09_07915 PF05437 Branched-chain amino acid transport protein (AzlD) KUE09_07920 PF03591 AzlC protein KUE09_07945 PF06071 Protein of unknown function (DUF933) KUE09_07945 PF01926 50S ribosome-binding GTPase KUE09_07950 PF00528 Binding-protein-dependent transport system inner membrane component KUE09_07955 PF00005 ABC transporter KUE09_07955 PF09383 NIL domain KUE09_07960 PF03180 NLPA lipoprotein KUE09_07965 PF03180 NLPA lipoprotein KUE09_07970 PF00296 Luciferase-like monooxygenase KUE09_07980 PF02771 Acyl-CoA dehydrogenase, N-terminal domain KUE09_07980 PF08028 Acyl-CoA dehydrogenase, C-terminal domain KUE09_07995 PF00528 Binding-protein-dependent transport system inner membrane component KUE09_08000 PF00528 Binding-protein-dependent transport system inner membrane component KUE09_08005 PF00005 ABC transporter KUE09_08015 PF01037 Lrp/AsnC ligand binding domain KUE09_08020 PF01709 Transcriptional regulator KUE09_08030 PF00440 Bacterial regulatory proteins, tetR family KUE09_08050 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KUE09_08050 PF03466 LysR substrate binding domain KUE09_08065 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin KUE09_08075 PF00892 EamA-like transporter family KUE09_08095 PF13954 PapC N-terminal domain KUE09_08095 PF00577 Outer membrane usher protein KUE09_08095 PF13953 PapC C-terminal domain KUE09_08100 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain KUE09_08100 PF02753 Pili assembly chaperone PapD, C-terminal domain KUE09_08105 PF16970 Type-1 fimbrial protein, A KUE09_08120 PF04055 Radical SAM superfamily KUE09_08120 PF06968 Biotin and Thiamin Synthesis associated domain KUE09_08125 PF08331 Domain of unknown function (DUF1730) KUE09_08130 PF03853 YjeF-related protein N-terminus KUE09_08130 PF01256 Carbohydrate kinase KUE09_08135 PF02075 Crossover junction endodeoxyribonuclease RuvC KUE09_08150 PF00905 Penicillin binding protein transpeptidase domain KUE09_08170 PF02772 S-adenosylmethionine synthetase, central domain KUE09_08170 PF02773 S-adenosylmethionine synthetase, C-terminal domain KUE09_08170 PF00438 S-adenosylmethionine synthetase, N-terminal domain KUE09_08175 PF02779 Transketolase, pyrimidine binding domain KUE09_08175 PF02780 Transketolase, C-terminal domain KUE09_08175 PF00456 Transketolase, thiamine diphosphate binding domain KUE09_08185 PF04264 YceI-like domain KUE09_08195 PF09992 Phosphodiester glycosidase KUE09_08205 PF05958 tRNA (Uracil-5-)-methyltransferase KUE09_08210 PF04229 GrpB protein KUE09_08215 PF00171 Aldehyde dehydrogenase family KUE09_08215 PF14850 DNA-binding domain of Proline dehydrogenase KUE09_08215 PF18327 Proline utilization A proline dehydrogenase N-terminal domain KUE09_08215 PF01619 Proline dehydrogenase KUE09_08220 PF01037 Lrp/AsnC ligand binding domain KUE09_08225 PF00474 Sodium:solute symporter family KUE09_08230 PF02146 Sir2 family KUE09_08235 PF01597 Glycine cleavage H-protein KUE09_08240 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term KUE09_08240 PF12833 Helix-turn-helix domain KUE09_08250 PF00664 ABC transporter transmembrane region KUE09_08250 PF00005 ABC transporter KUE09_08255 PF09831 Uncharacterized protein conserved in bacteria (DUF2058) KUE09_08260 PF06912 Protein of unknown function (DUF1275) KUE09_08265 PF00375 Sodium:dicarboxylate symporter family KUE09_08280 PF08007 Cupin superfamily protein KUE09_08285 PF02545 Maf-like protein KUE09_08295 PF00162 Phosphoglycerate kinase KUE09_08305 PF01116 Fructose-bisphosphate aldolase class-II KUE09_08310 PF09312 SurA N-terminal domain KUE09_08310 PF00639 PPIC-type PPIASE domain KUE09_08315 PF03968 OstA-like protein KUE09_08315 PF04453 LPS transport system D KUE09_08320 PF01636 Phosphotransferase enzyme family KUE09_08325 PF00483 Nucleotidyl transferase KUE09_08330 PF02527 rRNA small subunit methyltransferase G KUE09_08335 PF13614 AAA domain KUE09_08340 PF02195 ParB-like nuclease domain KUE09_08340 PF17762 HTH domain found in ParB protein KUE09_08345 PF01618 MotA/TolQ/ExbB proton channel family KUE09_08355 PF00005 ABC transporter KUE09_08355 PF00664 ABC transporter transmembrane region KUE09_08360 PF02606 Tetraacyldisaccharide-1-P 4'-kinase KUE09_08365 PF02348 Cytidylyltransferase KUE09_08370 PF09115 DNA polymerase III, delta subunit, C terminal KUE09_08380 PF01026 TatD related DNase KUE09_08395 PF07963 Prokaryotic N-terminal methylation motif KUE09_08395 PF02501 Type II secretion system (T2SS), protein I KUE09_08400 PF11612 Type II secretion system (T2SS), protein J KUE09_08400 PF07963 Prokaryotic N-terminal methylation motif KUE09_08405 PF03934 Type II secretion system (T2SS), protein K KUE09_08415 PF03167 Uracil DNA glycosylase superfamily KUE09_08425 PF14437 MafB19-like deaminase KUE09_08435 PF02224 Cytidylate kinase KUE09_08440 PF00575 S1 RNA binding domain KUE09_08445 PF00216 Bacterial DNA-binding protein KUE09_08455 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family KUE09_08465 PF00743 Flavin-binding monooxygenase-like KUE09_08475 PF03969 AFG1-like ATPase KUE09_08480 PF01274 Malate synthase KUE09_08490 PF02472 Biopolymer transport protein ExbD/TolR KUE09_08495 PF02472 Biopolymer transport protein ExbD/TolR KUE09_08500 PF01618 MotA/TolQ/ExbB proton channel family KUE09_08510 PF07715 TonB-dependent Receptor Plug Domain KUE09_08510 PF00593 TonB dependent receptor KUE09_08520 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle KUE09_08530 PF01432 Peptidase family M3 KUE09_08535 PF00528 Binding-protein-dependent transport system inner membrane component KUE09_08540 PF00528 Binding-protein-dependent transport system inner membrane component KUE09_08545 PF08352 Oligopeptide/dipeptide transporter, C-terminal region KUE09_08545 PF00005 ABC transporter KUE09_08560 PF00459 Inositol monophosphatase family KUE09_08570 PF01649 Ribosomal protein S20 KUE09_08575 PF13460 NAD(P)H-binding KUE09_08580 PF03737 Aldolase/RraA KUE09_08600 PF02559 CarD-like/TRCF domain KUE09_08600 PF17757 UvrB interaction domain KUE09_08600 PF03461 TRCF domain KUE09_08600 PF00271 Helicase conserved C-terminal domain KUE09_08600 PF00270 DEAD/DEAH box helicase KUE09_08610 PF00211 Adenylate and Guanylate cyclase catalytic domain KUE09_08615 PF00111 2Fe-2S iron-sulfur cluster binding domain KUE09_08620 PF00012 Hsp70 protein KUE09_08625 PF07743 HSCB C-terminal oligomerisation domain KUE09_08625 PF00226 DnaJ domain KUE09_08630 PF01521 Iron-sulphur cluster biosynthesis KUE09_08635 PF01592 NifU-like N terminal domain KUE09_08640 PF00266 Aminotransferase class-V KUE09_08645 PF02082 Transcriptional regulator KUE09_08660 PF00216 Bacterial DNA-binding protein KUE09_08665 PF09312 SurA N-terminal domain KUE09_08665 PF00639 PPIC-type PPIASE domain KUE09_08670 PF12852 Cupin KUE09_08670 PF12833 Helix-turn-helix domain KUE09_08675 PF00487 Fatty acid desaturase KUE09_08680 PF02770 Acyl-CoA dehydrogenase, middle domain KUE09_08680 PF02771 Acyl-CoA dehydrogenase, N-terminal domain KUE09_08680 PF00441 Acyl-CoA dehydrogenase, C-terminal domain KUE09_08685 PF00441 Acyl-CoA dehydrogenase, C-terminal domain KUE09_08685 PF02770 Acyl-CoA dehydrogenase, middle domain KUE09_08685 PF02771 Acyl-CoA dehydrogenase, N-terminal domain KUE09_08690 PF03109 ABC1 family KUE09_08700 PF04073 Aminoacyl-tRNA editing domain KUE09_08705 PF06276 Ferric iron reductase FhuF-like transporter KUE09_08705 PF04183 IucA / IucC family KUE09_08710 PF13434 L-lysine 6-monooxygenase (NADPH-requiring) KUE09_08715 PF07690 Major Facilitator Superfamily KUE09_08720 PF06276 Ferric iron reductase FhuF-like transporter KUE09_08720 PF04183 IucA / IucC family KUE09_08725 PF06276 Ferric iron reductase FhuF-like transporter KUE09_08725 PF04183 IucA / IucC family KUE09_08735 PF03737 Aldolase/RraA KUE09_08740 PF07715 TonB-dependent Receptor Plug Domain KUE09_08740 PF00593 TonB dependent receptor KUE09_08765 PF13419 Haloacid dehalogenase-like hydrolase KUE09_08775 PF02283 Cobinamide kinase / cobinamide phosphate guanyltransferase KUE09_08780 PF02277 Phosphoribosyltransferase KUE09_08785 PF00300 Histidine phosphatase superfamily (branch 1) KUE09_08795 PF02654 Cobalamin-5-phosphate synthase KUE09_08800 PF00793 DAHP synthetase I family KUE09_08810 PF01925 Sulfite exporter TauE/SafE KUE09_08830 PF00593 TonB dependent receptor KUE09_08830 PF07715 TonB-dependent Receptor Plug Domain KUE09_08835 PF02684 Lipid-A-disaccharide synthetase KUE09_08845 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion KUE09_08850 PF00005 ABC transporter KUE09_08885 PF01230 HIT domain KUE09_08915 PF08241 Methyltransferase domain KUE09_08920 PF00561 alpha/beta hydrolase fold KUE09_08925 PF01053 Cys/Met metabolism PLP-dependent enzyme KUE09_08935 PF02575 YbaB/EbfC DNA-binding family KUE09_08940 PF02132 RecR protein KUE09_08940 PF13662 Toprim domain KUE09_08945 PF00570 HRDC domain KUE09_08945 PF01612 3'-5' exonuclease KUE09_08965 PF05166 YcgL domain KUE09_08975 PF17862 AAA+ lid domain KUE09_08975 PF01434 Peptidase family M41 KUE09_08975 PF00004 ATPase family associated with various cellular activities (AAA) KUE09_08985 PF00291 Pyridoxal-phosphate dependent enzyme KUE09_08990 PF05175 Methyltransferase small domain KUE09_08995 PF01264 Chorismate synthase KUE09_09000 PF08448 PAS fold KUE09_09000 PF00990 Diguanylate cyclase, GGDEF domain KUE09_09015 PF04055 Radical SAM superfamily KUE09_09020 PF00676 Dehydrogenase E1 component KUE09_09025 PF02779 Transketolase, pyrimidine binding domain KUE09_09025 PF02780 Transketolase, C-terminal domain KUE09_09030 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) KUE09_09030 PF00364 Biotin-requiring enzyme KUE09_09030 PF02817 e3 binding domain KUE09_09035 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain KUE09_09035 PF07992 Pyridine nucleotide-disulphide oxidoreductase KUE09_09040 PF00106 short chain dehydrogenase KUE09_09045 PF08240 Alcohol dehydrogenase GroES-like domain KUE09_09045 PF00107 Zinc-binding dehydrogenase KUE09_09050 PF01062 Bestrophin, RFP-TM, chloride channel KUE09_09055 PF02954 Bacterial regulatory protein, Fis family KUE09_09055 PF00158 Sigma-54 interaction domain KUE09_09055 PF00072 Response regulator receiver domain KUE09_09060 PF04273 Putative phosphatase (DUF442) KUE09_09060 PF00753 Metallo-beta-lactamase superfamily KUE09_09065 PF04273 Putative phosphatase (DUF442) KUE09_09065 PF00753 Metallo-beta-lactamase superfamily KUE09_09070 PF01925 Sulfite exporter TauE/SafE KUE09_09085 PF06445 GyrI-like small molecule binding domain KUE09_09085 PF12833 Helix-turn-helix domain KUE09_09090 PF01638 HxlR-like helix-turn-helix KUE09_09095 PF02525 Flavodoxin-like fold KUE09_09105 PF00392 Bacterial regulatory proteins, gntR family KUE09_09105 PF07702 UTRA domain KUE09_09125 PF00528 Binding-protein-dependent transport system inner membrane component KUE09_09130 PF00005 ABC transporter KUE09_09145 PF00083 Sugar (and other) transporter KUE09_09150 PF07715 TonB-dependent Receptor Plug Domain KUE09_09150 PF00593 TonB dependent receptor KUE09_09155 PF10415 Fumarase C C-terminus KUE09_09155 PF00206 Lyase KUE09_09170 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KUE09_09170 PF03466 LysR substrate binding domain KUE09_09175 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KUE09_09175 PF03466 LysR substrate binding domain KUE09_09180 PF02803 Thiolase, C-terminal domain KUE09_09180 PF00108 Thiolase, N-terminal domain KUE09_09185 PF02667 Short chain fatty acid transporter KUE09_09190 PF01144 Coenzyme A transferase KUE09_09195 PF01144 Coenzyme A transferase KUE09_09200 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KUE09_09200 PF03466 LysR substrate binding domain KUE09_09220 PF00440 Bacterial regulatory proteins, tetR family KUE09_09240 PF06719 AraC-type transcriptional regulator N-terminus KUE09_09240 PF12833 Helix-turn-helix domain KUE09_09245 PF07690 Major Facilitator Superfamily KUE09_09250 PF01738 Dienelactone hydrolase family KUE09_09265 PF01613 Flavin reductase like domain KUE09_09280 PF00175 Oxidoreductase NAD-binding domain KUE09_09280 PF00111 2Fe-2S iron-sulfur cluster binding domain KUE09_09280 PF00970 Oxidoreductase FAD-binding domain KUE09_09285 PF00866 Ring hydroxylating beta subunit KUE09_09290 PF00848 Ring hydroxylating alpha subunit (catalytic domain) KUE09_09290 PF00355 Rieske [2Fe-2S] domain KUE09_09295 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KUE09_09295 PF03459 TOBE domain KUE09_09305 PF00528 Binding-protein-dependent transport system inner membrane component KUE09_09310 PF03459 TOBE domain KUE09_09310 PF00005 ABC transporter KUE09_09315 PF00106 short chain dehydrogenase KUE09_09320 PF00550 Phosphopantetheine attachment site KUE09_09320 PF00857 Isochorismatase family KUE09_09330 PF00149 Calcineurin-like phosphoesterase KUE09_09335 PF13089 Polyphosphate kinase N-terminal domain KUE09_09335 PF17941 Polyphosphate kinase C-terminal domain 1 KUE09_09335 PF13090 Polyphosphate kinase C-terminal domain 2 KUE09_09335 PF02503 Polyphosphate kinase middle domain KUE09_09340 PF08042 PqqA family KUE09_09345 PF12706 Beta-lactamase superfamily domain KUE09_09350 PF03070 TENA/THI-4/PQQC family KUE09_09355 PF05402 Coenzyme PQQ synthesis protein D (PqqD) KUE09_09360 PF13186 Iron-sulfur cluster-binding domain KUE09_09360 PF04055 Radical SAM superfamily KUE09_09365 PF01244 Membrane dipeptidase (Peptidase family M19) KUE09_09380 PF13091 PLD-like domain KUE09_09395 PF00199 Catalase KUE09_09410 PF00107 Zinc-binding dehydrogenase KUE09_09410 PF08240 Alcohol dehydrogenase GroES-like domain KUE09_09425 PF00419 Fimbrial protein KUE09_09430 PF00577 Outer membrane usher protein KUE09_09430 PF13954 PapC N-terminal domain KUE09_09430 PF13953 PapC C-terminal domain KUE09_09435 PF02753 Pili assembly chaperone PapD, C-terminal domain KUE09_09435 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain KUE09_09440 PF16970 Type-1 fimbrial protein, A KUE09_09460 PF00296 Luciferase-like monooxygenase KUE09_09465 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle KUE09_09470 PF00528 Binding-protein-dependent transport system inner membrane component KUE09_09475 PF00528 Binding-protein-dependent transport system inner membrane component KUE09_09475 PF12911 N-terminal TM domain of oligopeptide transport permease C KUE09_09480 PF08352 Oligopeptide/dipeptide transporter, C-terminal region KUE09_09480 PF00005 ABC transporter KUE09_09485 PF08028 Acyl-CoA dehydrogenase, C-terminal domain KUE09_09485 PF02770 Acyl-CoA dehydrogenase, middle domain KUE09_09485 PF02771 Acyl-CoA dehydrogenase, N-terminal domain KUE09_09495 PF00664 ABC transporter transmembrane region KUE09_09495 PF00005 ABC transporter KUE09_09500 PF00664 ABC transporter transmembrane region KUE09_09500 PF00005 ABC transporter KUE09_09510 PF00593 TonB dependent receptor KUE09_09510 PF07715 TonB-dependent Receptor Plug Domain KUE09_09520 PF00296 Luciferase-like monooxygenase KUE09_09525 PF00158 Sigma-54 interaction domain KUE09_09530 PF00902 Sec-independent protein translocase protein (TatC) KUE09_09535 PF02416 mttA/Hcf106 family KUE09_09540 PF02416 mttA/Hcf106 family KUE09_09545 PF00005 ABC transporter KUE09_09550 PF00528 Binding-protein-dependent transport system inner membrane component KUE09_09555 PF00528 Binding-protein-dependent transport system inner membrane component KUE09_09560 PF09084 NMT1/THI5 like KUE09_09565 PF00296 Luciferase-like monooxygenase KUE09_09570 PF03544 Gram-negative bacterial TonB protein C-terminal KUE09_09575 PF01618 MotA/TolQ/ExbB proton channel family KUE09_09580 PF02472 Biopolymer transport protein ExbD/TolR KUE09_09585 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle KUE09_09595 PF00593 TonB dependent receptor KUE09_09595 PF07715 TonB-dependent Receptor Plug Domain KUE09_09600 PF00296 Luciferase-like monooxygenase KUE09_09605 PF00005 ABC transporter KUE09_09605 PF17755 UvrA DNA-binding domain KUE09_09605 PF17760 UvrA interaction domain KUE09_09610 PF00873 AcrB/AcrD/AcrF family KUE09_09615 PF00529 HlyD membrane-fusion protein of T1SS KUE09_09615 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion KUE09_09620 PF00072 Response regulator receiver domain KUE09_09620 PF00486 Transcriptional regulatory protein, C terminal KUE09_09625 PF16527 Two-component sensor protein CpxA, periplasmic domain KUE09_09625 PF00672 HAMP domain KUE09_09625 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KUE09_09625 PF00512 His Kinase A (phospho-acceptor) domain KUE09_09635 PF12833 Helix-turn-helix domain KUE09_09635 PF02311 AraC-like ligand binding domain KUE09_09640 PF12146 Serine aminopeptidase, S33 KUE09_09675 PF02824 TGS domain KUE09_09675 PF04607 Region found in RelA / SpoT proteins KUE09_09675 PF13291 ACT domain KUE09_09685 PF01975 Survival protein SurE KUE09_09720 PF07690 Major Facilitator Superfamily KUE09_09725 PF13533 Biotin-lipoyl like KUE09_09740 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family KUE09_09745 PF14572 Phosphoribosyl synthetase-associated domain KUE09_09745 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase KUE09_09765 PF00005 ABC transporter KUE09_09770 PF01032 FecCD transport family KUE09_09780 PF08240 Alcohol dehydrogenase GroES-like domain KUE09_09780 PF00107 Zinc-binding dehydrogenase KUE09_09795 PF06719 AraC-type transcriptional regulator N-terminus KUE09_09795 PF12833 Helix-turn-helix domain KUE09_09800 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase KUE09_09800 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase KUE09_09805 PF07690 Major Facilitator Superfamily KUE09_09810 PF01370 NAD dependent epimerase/dehydratase family KUE09_09815 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KUE09_09815 PF03466 LysR substrate binding domain KUE09_09825 PF00920 Dehydratase family KUE09_09830 PF00171 Aldehyde dehydrogenase family KUE09_09845 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion KUE09_09845 PF00529 HlyD membrane-fusion protein of T1SS KUE09_09860 PF01557 Fumarylacetoacetate (FAA) hydrolase family KUE09_09865 PF13417 Glutathione S-transferase, N-terminal domain KUE09_09870 PF01494 FAD binding domain KUE09_09875 PF07883 Cupin domain KUE09_09880 PF03466 LysR substrate binding domain KUE09_09880 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KUE09_09895 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KUE09_09895 PF03466 LysR substrate binding domain KUE09_09905 PF08450 SMP-30/Gluconolactonase/LRE-like region KUE09_09910 PF00392 Bacterial regulatory proteins, gntR family KUE09_09910 PF07702 UTRA domain KUE09_09920 PF04909 Amidohydrolase KUE09_09925 PF07690 Major Facilitator Superfamily KUE09_09950 PF13360 PQQ-like domain KUE09_09955 PF01638 HxlR-like helix-turn-helix KUE09_09960 PF00107 Zinc-binding dehydrogenase KUE09_09960 PF08240 Alcohol dehydrogenase GroES-like domain KUE09_09965 PF02798 Glutathione S-transferase, N-terminal domain KUE09_09965 PF00043 Glutathione S-transferase, C-terminal domain KUE09_09970 PF07681 DoxX KUE09_09975 PF02525 Flavodoxin-like fold KUE09_09980 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KUE09_09980 PF03466 LysR substrate binding domain KUE09_10030 PF08359 YsiA-like protein, C-terminal region KUE09_10030 PF00440 Bacterial regulatory proteins, tetR family KUE09_10035 PF12706 Beta-lactamase superfamily domain KUE09_10045 PF07992 Pyridine nucleotide-disulphide oxidoreductase KUE09_10055 PF00376 MerR family regulatory protein KUE09_10055 PF09278 MerR, DNA binding KUE09_10060 PF01872 RibD C-terminal domain KUE09_10065 PF00106 short chain dehydrogenase KUE09_10070 PF00724 NADH:flavin oxidoreductase / NADH oxidase family KUE09_10070 PF07992 Pyridine nucleotide-disulphide oxidoreductase KUE09_10075 PF01047 MarR family KUE09_10080 PF07859 alpha/beta hydrolase fold KUE09_10095 PF00199 Catalase KUE09_10095 PF06628 Catalase-related immune-responsive KUE09_10100 PF00561 alpha/beta hydrolase fold KUE09_10110 PF00171 Aldehyde dehydrogenase family KUE09_10115 PF08240 Alcohol dehydrogenase GroES-like domain KUE09_10115 PF00107 Zinc-binding dehydrogenase KUE09_10120 PF00474 Sodium:solute symporter family KUE09_10125 PF04341 Protein of unknown function, DUF485 KUE09_10130 PF13193 AMP-binding enzyme C-terminal domain KUE09_10130 PF00501 AMP-binding enzyme KUE09_10135 PF06506 Propionate catabolism activator KUE09_10135 PF02954 Bacterial regulatory protein, Fis family KUE09_10135 PF00158 Sigma-54 interaction domain KUE09_10145 PF02770 Acyl-CoA dehydrogenase, middle domain KUE09_10145 PF02771 Acyl-CoA dehydrogenase, N-terminal domain KUE09_10145 PF00441 Acyl-CoA dehydrogenase, C-terminal domain KUE09_10160 PF01636 Phosphotransferase enzyme family KUE09_10165 PF00171 Aldehyde dehydrogenase family KUE09_10175 PF07690 Major Facilitator Superfamily KUE09_10180 PF00920 Dehydratase family KUE09_10185 PF07729 FCD domain KUE09_10185 PF00392 Bacterial regulatory proteins, gntR family KUE09_10195 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KUE09_10195 PF03466 LysR substrate binding domain KUE09_10200 PF13378 Enolase C-terminal domain-like KUE09_10200 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain KUE09_10205 PF02426 Muconolactone delta-isomerase KUE09_10210 PF00775 Dioxygenase KUE09_10210 PF04444 Catechol dioxygenase N terminus KUE09_10215 PF01144 Coenzyme A transferase KUE09_10220 PF01144 Coenzyme A transferase KUE09_10225 PF02803 Thiolase, C-terminal domain KUE09_10225 PF00108 Thiolase, N-terminal domain KUE09_10230 PF12146 Serine aminopeptidase, S33 KUE09_10235 PF00171 Aldehyde dehydrogenase family KUE09_10245 PF02728 Copper amine oxidase, N3 domain KUE09_10245 PF01179 Copper amine oxidase, enzyme domain KUE09_10245 PF07833 Copper amine oxidase N-terminal domain KUE09_10245 PF02727 Copper amine oxidase, N2 domain KUE09_10250 PF02311 AraC-like ligand binding domain KUE09_10250 PF12833 Helix-turn-helix domain KUE09_10255 PF01613 Flavin reductase like domain KUE09_10260 PF00175 Oxidoreductase NAD-binding domain KUE09_10260 PF00111 2Fe-2S iron-sulfur cluster binding domain KUE09_10275 PF00848 Ring hydroxylating alpha subunit (catalytic domain) KUE09_10275 PF00355 Rieske [2Fe-2S] domain KUE09_10290 PF08028 Acyl-CoA dehydrogenase, C-terminal domain KUE09_10295 PF01425 Amidase KUE09_10305 PF07690 Major Facilitator Superfamily KUE09_10315 PF00106 short chain dehydrogenase KUE09_10330 PF00441 Acyl-CoA dehydrogenase, C-terminal domain KUE09_10330 PF02770 Acyl-CoA dehydrogenase, middle domain KUE09_10330 PF02771 Acyl-CoA dehydrogenase, N-terminal domain KUE09_10335 PF03466 LysR substrate binding domain KUE09_10335 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KUE09_10340 PF09339 IclR helix-turn-helix domain KUE09_10340 PF01614 Bacterial transcriptional regulator KUE09_10345 PF00753 Metallo-beta-lactamase superfamily KUE09_10355 PF04143 Sulphur transport KUE09_10365 PF13360 PQQ-like domain KUE09_10365 PF01011 PQQ enzyme repeat KUE09_10370 PF04966 Carbohydrate-selective porin, OprB family KUE09_10375 PF05048 Periplasmic copper-binding protein (NosD) KUE09_10380 PF01487 Type I 3-dehydroquinase KUE09_10385 PF00775 Dioxygenase KUE09_10390 PF00775 Dioxygenase KUE09_10390 PF12391 Protocatechuate 3,4-dioxygenase beta subunit N terminal KUE09_10395 PF02627 Carboxymuconolactone decarboxylase family KUE09_10400 PF07690 Major Facilitator Superfamily KUE09_10405 PF00561 alpha/beta hydrolase fold KUE09_10410 PF10397 Adenylosuccinate lyase C-terminus KUE09_10410 PF00206 Lyase KUE09_10415 PF00108 Thiolase, N-terminal domain KUE09_10415 PF02803 Thiolase, C-terminal domain KUE09_10420 PF01144 Coenzyme A transferase KUE09_10425 PF01144 Coenzyme A transferase KUE09_10430 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase KUE09_10435 PF04977 Septum formation initiator KUE09_10445 PF03952 Enolase, N-terminal domain KUE09_10445 PF00113 Enolase, C-terminal TIM barrel domain KUE09_10450 PF00793 DAHP synthetase I family KUE09_10455 PF06418 CTP synthase N-terminus KUE09_10455 PF00117 Glutamine amidotransferase class-I KUE09_10485 PF07992 Pyridine nucleotide-disulphide oxidoreductase KUE09_10485 PF00724 NADH:flavin oxidoreductase / NADH oxidase family KUE09_10500 PF00793 DAHP synthetase I family KUE09_10505 PF02694 Uncharacterised BCR, YnfA/UPF0060 family KUE09_10510 PF17871 AAA lid domain KUE09_10510 PF00004 ATPase family associated with various cellular activities (AAA) KUE09_10510 PF07724 AAA domain (Cdc48 subfamily) KUE09_10510 PF02861 Clp amino terminal domain, pathogenicity island component KUE09_10510 PF10431 C-terminal, D2-small domain, of ClpB protein KUE09_10515 PF02617 ATP-dependent Clp protease adaptor protein ClpS KUE09_10525 PF01118 Semialdehyde dehydrogenase, NAD binding domain KUE09_10525 PF02774 Semialdehyde dehydrogenase, dimerisation domain KUE09_10540 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) KUE09_10545 PF00291 Pyridoxal-phosphate dependent enzyme KUE09_10545 PF00585 C-terminal regulatory domain of Threonine dehydratase KUE09_10550 PF02254 TrkA-N domain KUE09_10550 PF02080 TrkA-C domain KUE09_10555 PF02386 Cation transport protein KUE09_10560 PF02253 Phospholipase A1 KUE09_10565 PF08367 Peptidase M16C associated KUE09_10565 PF00675 Insulinase (Peptidase family M16) KUE09_10565 PF05193 Peptidase M16 inactive domain KUE09_10570 PF07715 TonB-dependent Receptor Plug Domain KUE09_10570 PF00593 TonB dependent receptor KUE09_10575 PF00294 pfkB family carbohydrate kinase KUE09_10585 PF07290 Protein of unknown function (DUF1449) KUE09_10595 PF01654 Cytochrome bd terminal oxidase subunit I KUE09_10600 PF02322 Cytochrome bd terminal oxidase subunit II KUE09_10605 PF08173 Membrane bound YbgT-like protein KUE09_10615 PF09829 Uncharacterized protein conserved in bacteria (DUF2057) KUE09_10625 PF02881 SRP54-type protein, helical bundle domain KUE09_10625 PF00448 SRP54-type protein, GTPase domain KUE09_10650 PF00478 IMP dehydrogenase / GMP reductase domain KUE09_10650 PF00571 CBS domain KUE09_10655 PF00202 Aminotransferase class-III KUE09_10660 PF00462 Glutaredoxin KUE09_10670 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KUE09_10670 PF03466 LysR substrate binding domain KUE09_10675 PF00557 Metallopeptidase family M24 KUE09_10680 PF05525 Branched-chain amino acid transport protein KUE09_10705 PF00391 PEP-utilising enzyme, mobile domain KUE09_10705 PF00381 PTS HPr component phosphorylation site KUE09_10705 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 KUE09_10705 PF05524 PEP-utilising enzyme, N-terminal KUE09_10705 PF02896 PEP-utilising enzyme, TIM barrel domain KUE09_10710 PF00294 pfkB family carbohydrate kinase KUE09_10715 PF02378 Phosphotransferase system, EIIC KUE09_10715 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit KUE09_10730 PF00563 EAL domain KUE09_10730 PF00990 Diguanylate cyclase, GGDEF domain KUE09_10730 PF03707 Bacterial signalling protein N terminal repeat KUE09_10740 PF07995 Glucose / Sorbosone dehydrogenase KUE09_10755 PF01740 STAS domain KUE09_10755 PF00916 Sulfate permease family KUE09_10760 PF00082 Subtilase family KUE09_10760 PF05922 Peptidase inhibitor I9 KUE09_10770 PF00324 Amino acid permease KUE09_10775 PF00266 Aminotransferase class-V KUE09_10780 PF01037 Lrp/AsnC ligand binding domain KUE09_10805 PF13419 Haloacid dehalogenase-like hydrolase KUE09_10810 PF01479 S4 domain KUE09_10815 PF00154 recA bacterial DNA recombination protein KUE09_10820 PF02631 RecX family KUE09_10835 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 KUE09_10835 PF00132 Bacterial transferase hexapeptide (six repeats) KUE09_10840 PF07977 FabA-like domain KUE09_10845 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD KUE09_10845 PF00132 Bacterial transferase hexapeptide (six repeats) KUE09_10855 PF07244 Surface antigen variable number repeat KUE09_10855 PF01103 Surface antigen KUE09_10860 PF13180 PDZ domain KUE09_10860 PF17820 PDZ domain KUE09_10860 PF02163 Peptidase family M50 KUE09_10865 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain KUE09_10865 PF13288 DXP reductoisomerase C-terminal domain KUE09_10865 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase KUE09_10875 PF01255 Putative undecaprenyl diphosphate synthase KUE09_10880 PF01765 Ribosome recycling factor KUE09_10885 PF00696 Amino acid kinase family KUE09_10890 PF00919 Uncharacterized protein family UPF0004 KUE09_10890 PF18693 TRAM domain KUE09_10890 PF04055 Radical SAM superfamily KUE09_10900 PF00989 PAS fold KUE09_10900 PF00512 His Kinase A (phospho-acceptor) domain KUE09_10900 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KUE09_10905 PF00158 Sigma-54 interaction domain KUE09_10905 PF00072 Response regulator receiver domain KUE09_10905 PF02954 Bacterial regulatory protein, Fis family KUE09_10910 PF00440 Bacterial regulatory proteins, tetR family KUE09_10915 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain KUE09_10915 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain KUE09_10925 PF02542 YgbB family KUE09_10935 PF01266 FAD dependent oxidoreductase KUE09_10955 PF00206 Lyase KUE09_10955 PF10415 Fumarase C C-terminus KUE09_10960 PF16363 GDP-mannose 4,6 dehydratase KUE09_10965 PF02635 DsrE/DsrF-like family KUE09_10985 PF00892 EamA-like transporter family KUE09_10990 PF00392 Bacterial regulatory proteins, gntR family KUE09_10990 PF00155 Aminotransferase class I and II KUE09_10995 PF01638 HxlR-like helix-turn-helix KUE09_11000 PF00994 Probable molybdopterin binding domain KUE09_11000 PF03454 MoeA C-terminal region (domain IV) KUE09_11000 PF03453 MoeA N-terminal region (domain I and II) KUE09_11005 PF01967 MoaC family KUE09_11005 PF00994 Probable molybdopterin binding domain KUE09_11010 PF02391 MoaE protein KUE09_11020 PF04055 Radical SAM superfamily KUE09_11020 PF06463 Molybdenum Cofactor Synthesis C KUE09_11025 PF01568 Molydopterin dinucleotide binding domain KUE09_11025 PF00384 Molybdopterin oxidoreductase KUE09_11025 PF04879 Molybdopterin oxidoreductase Fe4S4 domain KUE09_11030 PF12804 MobA-like NTP transferase domain KUE09_11035 PF04879 Molybdopterin oxidoreductase Fe4S4 domain KUE09_11035 PF04324 BFD-like [2Fe-2S] binding domain KUE09_11035 PF00384 Molybdopterin oxidoreductase KUE09_11035 PF01568 Molydopterin dinucleotide binding domain KUE09_11040 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain KUE09_11040 PF04324 BFD-like [2Fe-2S] binding domain KUE09_11040 PF01077 Nitrite and sulphite reductase 4Fe-4S domain KUE09_11040 PF07992 Pyridine nucleotide-disulphide oxidoreductase KUE09_11040 PF18267 Rubredoxin NAD+ reductase C-terminal domain KUE09_11045 PF04324 BFD-like [2Fe-2S] binding domain KUE09_11045 PF01077 Nitrite and sulphite reductase 4Fe-4S domain KUE09_11045 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain KUE09_11045 PF07992 Pyridine nucleotide-disulphide oxidoreductase KUE09_11045 PF13806 Rieske-like [2Fe-2S] domain KUE09_11045 PF18267 Rubredoxin NAD+ reductase C-terminal domain KUE09_11055 PF00486 Transcriptional regulatory protein, C terminal KUE09_11055 PF00072 Response regulator receiver domain KUE09_11060 PF00005 ABC transporter KUE09_11070 PF13438 Domain of unknown function (DUF4113) KUE09_11070 PF00817 impB/mucB/samB family KUE09_11070 PF11799 impB/mucB/samB family C-terminal domain KUE09_11075 PF01220 Dehydroquinase class II KUE09_11080 PF00364 Biotin-requiring enzyme KUE09_11085 PF00289 Biotin carboxylase, N-terminal domain KUE09_11085 PF02785 Biotin carboxylase C-terminal domain KUE09_11085 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain KUE09_11095 PF12832 MFS_1 like family KUE09_11135 PF07484 Phage Tail Collar Domain KUE09_11135 PF08400 Prophage tail fibre N-terminal KUE09_11135 PF03335 Phage tail fibre repeat KUE09_11435 PF01645 Conserved region in glutamate synthase KUE09_11450 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain KUE09_11450 PF01565 FAD binding domain KUE09_11455 PF01451 Low molecular weight phosphotyrosine protein phosphatase KUE09_11465 PF00465 Iron-containing alcohol dehydrogenase KUE09_11470 PF03061 Thioesterase superfamily KUE09_11475 PF05506 Domain of unknown function (DUF756) KUE09_11475 PF04185 Phosphoesterase family KUE09_11480 PF12168 DNA polymerase III subunits tau domain IV DnaB-binding KUE09_11480 PF12169 DNA polymerase III subunits gamma and tau domain III KUE09_11480 PF12170 DNA polymerase III tau subunit V interacting with alpha KUE09_11495 PF07690 Major Facilitator Superfamily KUE09_11505 PF00144 Beta-lactamase KUE09_11510 PF01575 MaoC like domain KUE09_11520 PF02803 Thiolase, C-terminal domain KUE09_11520 PF00108 Thiolase, N-terminal domain KUE09_11530 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KUE09_11530 PF03466 LysR substrate binding domain KUE09_11535 PF00923 Transaldolase/Fructose-6-phosphate aldolase KUE09_11540 PF01810 LysE type translocator KUE09_11545 PF01037 Lrp/AsnC ligand binding domain KUE09_11550 PF03594 Benzoate membrane transport protein KUE09_11555 PF02308 MgtC family KUE09_11560 PF00690 Cation transporter/ATPase, N-terminus KUE09_11560 PF00689 Cation transporting ATPase, C-terminus KUE09_11585 PF00582 Universal stress protein family KUE09_11590 PF00005 ABC transporter KUE09_11590 PF12848 ABC transporter KUE09_11610 PF00593 TonB dependent receptor KUE09_11610 PF07715 TonB-dependent Receptor Plug Domain KUE09_11640 PF00924 Mechanosensitive ion channel KUE09_11645 PF07715 TonB-dependent Receptor Plug Domain KUE09_11645 PF00593 TonB dependent receptor KUE09_11675 PF01494 FAD binding domain KUE09_11695 PF07690 Major Facilitator Superfamily KUE09_11700 PF07690 Major Facilitator Superfamily KUE09_11705 PF07992 Pyridine nucleotide-disulphide oxidoreductase KUE09_11705 PF14759 Reductase C-terminal KUE09_11710 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase KUE09_11715 PF00106 short chain dehydrogenase KUE09_11720 PF00355 Rieske [2Fe-2S] domain KUE09_11725 PF00866 Ring hydroxylating beta subunit KUE09_11730 PF00848 Ring hydroxylating alpha subunit (catalytic domain) KUE09_11730 PF00355 Rieske [2Fe-2S] domain KUE09_11735 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KUE09_11735 PF03466 LysR substrate binding domain KUE09_11740 PF00561 alpha/beta hydrolase fold KUE09_11745 PF03573 outer membrane porin, OprD family KUE09_11750 PF07836 DmpG-like communication domain KUE09_11750 PF00682 HMGL-like KUE09_11755 PF01118 Semialdehyde dehydrogenase, NAD binding domain KUE09_11755 PF09290 Prokaryotic acetaldehyde dehydrogenase, dimerisation KUE09_11760 PF01557 Fumarylacetoacetate (FAA) hydrolase family KUE09_11770 PF07690 Major Facilitator Superfamily KUE09_11775 PF12706 Beta-lactamase superfamily domain KUE09_11785 PF02656 Domain of unknown function (DUF202) KUE09_11800 PF00664 ABC transporter transmembrane region KUE09_11800 PF00005 ABC transporter KUE09_11800 PF03412 Peptidase C39 family KUE09_11805 PF02321 Outer membrane efflux protein KUE09_11815 PF00691 OmpA family KUE09_11815 PF01389 OmpA-like transmembrane domain KUE09_11840 PF00691 OmpA family KUE09_11840 PF01389 OmpA-like transmembrane domain KUE09_11845 PF05658 Head domain of trimeric autotransporter adhesin KUE09_11845 PF05662 Coiled stalk of trimeric autotransporter adhesin KUE09_11845 PF13018 Extended Signal Peptide of Type V secretion system KUE09_11845 PF03895 YadA-like membrane anchor domain KUE09_11860 PF01037 Lrp/AsnC ligand binding domain KUE09_11865 PF01817 Chorismate mutase type II KUE09_11885 PF11940 Domain of unknown function (DUF3458) Ig-like fold KUE09_11885 PF17432 Domain of unknown function (DUF3458_C) ARM repeats KUE09_11885 PF01433 Peptidase family M1 domain KUE09_11900 PF02110 Hydroxyethylthiazole kinase family KUE09_11905 PF06445 GyrI-like small molecule binding domain KUE09_11915 PF05970 PIF1-like helicase KUE09_11915 PF14493 Helix-turn-helix domain KUE09_11920 PF00465 Iron-containing alcohol dehydrogenase KUE09_11935 PF00171 Aldehyde dehydrogenase family KUE09_11940 PF13520 Amino acid permease KUE09_11945 PF06751 Ethanolamine ammonia lyase large subunit (EutB) KUE09_11950 PF05985 Ethanolamine ammonia-lyase light chain (EutC) KUE09_11955 PF00117 Glutamine amidotransferase class-I KUE09_11955 PF00958 GMP synthase C terminal domain KUE09_11955 PF02540 NAD synthase KUE09_11960 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain KUE09_11960 PF00749 tRNA synthetases class I (E and Q), catalytic domain KUE09_11965 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD KUE09_11970 PF00149 Calcineurin-like phosphoesterase KUE09_11980 PF00881 Nitroreductase family KUE09_11990 PF17209 Hfq protein KUE09_12000 PF01119 DNA mismatch repair protein, C-terminal domain KUE09_12000 PF08676 MutL C terminal dimerisation domain KUE09_12005 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE KUE09_12010 PF00849 RNA pseudouridylate synthase KUE09_12010 PF01479 S4 domain KUE09_12025 PF00849 RNA pseudouridylate synthase KUE09_12025 PF01479 S4 domain KUE09_12035 PF04284 Protein of unknown function (DUF441) KUE09_12040 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KUE09_12040 PF03466 LysR substrate binding domain KUE09_12060 PF07690 Major Facilitator Superfamily KUE09_12065 PF00027 Cyclic nucleotide-binding domain KUE09_12065 PF00520 Ion transport protein KUE09_12075 PF06434 Aconitate hydratase 2 N-terminus KUE09_12075 PF00330 Aconitase family (aconitate hydratase) KUE09_12075 PF11791 Aconitate B N-terminal domain KUE09_12090 PF01103 Surface antigen KUE09_12090 PF07244 Surface antigen variable number repeat KUE09_12090 PF17243 POTRA domain TamA domain 1 KUE09_12095 PF07690 Major Facilitator Superfamily KUE09_12100 PF03232 Ubiquinone biosynthesis protein COQ7 KUE09_12110 PF00120 Glutamine synthetase, catalytic domain KUE09_12115 PF00072 Response regulator receiver domain KUE09_12115 PF00486 Transcriptional regulatory protein, C terminal KUE09_12120 PF13493 Domain of unknown function (DUF4118) KUE09_12120 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KUE09_12120 PF00512 His Kinase A (phospho-acceptor) domain KUE09_12120 PF02702 Osmosensitive K+ channel His kinase sensor domain KUE09_12125 PF02669 K+-transporting ATPase, c chain KUE09_12135 PF03814 Potassium-transporting ATPase A subunit KUE09_12150 PF03109 ABC1 family KUE09_12155 PF00899 ThiF family KUE09_12160 PF01613 Flavin reductase like domain KUE09_12165 PF00501 AMP-binding enzyme KUE09_12165 PF13193 AMP-binding enzyme C-terminal domain KUE09_12170 PF02771 Acyl-CoA dehydrogenase, N-terminal domain KUE09_12170 PF00441 Acyl-CoA dehydrogenase, C-terminal domain KUE09_12170 PF02770 Acyl-CoA dehydrogenase, middle domain KUE09_12175 PF00106 short chain dehydrogenase KUE09_12180 PF12833 Helix-turn-helix domain KUE09_12185 PF13847 Methyltransferase domain KUE09_12185 PF17827 PrmC N-terminal domain KUE09_12190 PF00472 RF-1 domain KUE09_12190 PF03462 PCRF domain KUE09_12200 PF03466 LysR substrate binding domain KUE09_12200 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KUE09_12215 PF00296 Luciferase-like monooxygenase KUE09_12225 PF13994 PgaD-like protein KUE09_12230 PF00535 Glycosyl transferase family 2 KUE09_12235 PF14883 Hypothetical glycosyl hydrolase family 13 KUE09_12235 PF01522 Polysaccharide deacetylase KUE09_12245 PF03618 Kinase/pyrophosphorylase KUE09_12250 PF00391 PEP-utilising enzyme, mobile domain KUE09_12250 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain KUE09_12250 PF02896 PEP-utilising enzyme, TIM barrel domain KUE09_12260 PF06481 COX Aromatic Rich Motif KUE09_12260 PF00116 Cytochrome C oxidase subunit II, periplasmic domain KUE09_12265 PF00115 Cytochrome C and Quinol oxidase polypeptide I KUE09_12270 PF00510 Cytochrome c oxidase subunit III KUE09_12275 PF03626 Prokaryotic Cytochrome C oxidase subunit IV KUE09_12280 PF01040 UbiA prenyltransferase family KUE09_12285 PF01250 Ribosomal protein S6 KUE09_12290 PF01084 Ribosomal protein S18 KUE09_12295 PF03948 Ribosomal protein L9, C-terminal domain KUE09_12295 PF01281 Ribosomal protein L9, N-terminal domain KUE09_12300 PF03796 DnaB-like helicase C terminal domain KUE09_12300 PF00772 DnaB-like helicase N terminal domain KUE09_12305 PF00842 Alanine racemase, C-terminal domain KUE09_12305 PF01168 Alanine racemase, N-terminal domain KUE09_12315 PF01841 Transglutaminase-like superfamily KUE09_12315 PF08379 Bacterial transglutaminase-like N-terminal region KUE09_12325 PF14403 Circularly permuted ATP-grasp type 2 KUE09_12335 PF13932 GidA associated domain KUE09_12335 PF01134 Glucose inhibited division protein A KUE09_12355 PF02954 Bacterial regulatory protein, Fis family KUE09_12360 PF01808 AICARFT/IMPCHase bienzyme KUE09_12360 PF02142 MGS-like domain KUE09_12365 PF02844 Phosphoribosylglycinamide synthetase, N domain KUE09_12365 PF02843 Phosphoribosylglycinamide synthetase, C domain KUE09_12365 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain KUE09_12370 PF03180 NLPA lipoprotein KUE09_12375 PF09383 NIL domain KUE09_12375 PF00005 ABC transporter KUE09_12380 PF00528 Binding-protein-dependent transport system inner membrane component KUE09_12385 PF00753 Metallo-beta-lactamase superfamily KUE09_12385 PF16123 Hydroxyacylglutathione hydrolase C-terminus KUE09_12395 PF00375 Sodium:dicarboxylate symporter family KUE09_12415 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KUE09_12415 PF03466 LysR substrate binding domain KUE09_12420 PF07690 Major Facilitator Superfamily KUE09_12425 PF01494 FAD binding domain KUE09_12435 PF17932 Tetracyclin repressor-like, C-terminal domain KUE09_12435 PF00440 Bacterial regulatory proteins, tetR family KUE09_12445 PF07995 Glucose / Sorbosone dehydrogenase KUE09_12450 PF00892 EamA-like transporter family KUE09_12455 PF01177 Asp/Glu/Hydantoin racemase KUE09_12460 PF00085 Thioredoxin KUE09_12460 PF07992 Pyridine nucleotide-disulphide oxidoreductase KUE09_12475 PF02470 MlaD protein KUE09_12480 PF04403 Paraquat-inducible protein A KUE09_12510 PF00293 NUDIX domain KUE09_12515 PF00083 Sugar (and other) transporter KUE09_12515 PF08946 Osmosensory transporter coiled coil KUE09_12565 PF00392 Bacterial regulatory proteins, gntR family KUE09_12565 PF07729 FCD domain KUE09_12575 PF03616 Sodium/glutamate symporter KUE09_12580 PF00561 alpha/beta hydrolase fold KUE09_12605 PF04076 Bacterial OB fold (BOF) protein KUE09_12615 PF13649 Methyltransferase domain KUE09_12635 PF00324 Amino acid permease KUE09_12640 PF00171 Aldehyde dehydrogenase family KUE09_12645 PF00202 Aminotransferase class-III KUE09_12650 PF03466 LysR substrate binding domain KUE09_12650 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KUE09_12690 PF04829 Pre-toxin domain with VENN motif KUE09_12690 PF05860 haemagglutination activity domain KUE09_12690 PF13332 Hemagglutinin repeat KUE09_12690 PF13018 Extended Signal Peptide of Type V secretion system KUE09_12690 PF04829 Pre-toxin domain with VENN motif KUE09_12690 PF05860 haemagglutination activity domain KUE09_12690 PF13332 Hemagglutinin repeat KUE09_12690 PF13018 Extended Signal Peptide of Type V secretion system KUE09_12695 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB KUE09_12695 PF08479 POTRA domain, ShlB-type KUE09_12695 PF17287 POTRA domain KUE09_12720 PF03793 PASTA domain KUE09_12720 PF00069 Protein kinase domain KUE09_12740 PF00814 Glycoprotease family KUE09_12745 PF01165 Ribosomal protein S21 KUE09_12750 PF09424 Yqey-like protein KUE09_12755 PF01435 Peptidase family M48 KUE09_12760 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain KUE09_12760 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain KUE09_12775 PF00156 Phosphoribosyl transferase domain KUE09_12780 PF02674 Colicin V production protein KUE09_12785 PF01180 Dihydroorotate dehydrogenase KUE09_12805 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus KUE09_12805 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus KUE09_12810 PF00881 Nitroreductase family KUE09_12820 PF00270 DEAD/DEAH box helicase KUE09_12820 PF00271 Helicase conserved C-terminal domain KUE09_12825 PF00313 'Cold-shock' DNA-binding domain KUE09_12835 PF00140 Sigma-70 factor, region 1.2 KUE09_12835 PF04542 Sigma-70 region 2 KUE09_12835 PF04545 Sigma-70, region 4 KUE09_12840 PF04241 Protein of unknown function (DUF423) KUE09_12850 PF05690 Thiazole biosynthesis protein ThiG KUE09_12860 PF03883 Peroxide stress protein YaaA KUE09_12870 PF00158 Sigma-54 interaction domain KUE09_12870 PF06956 Regulator of RNA terminal phosphate cyclase KUE09_12875 PF00753 Metallo-beta-lactamase superfamily KUE09_12880 PF01139 tRNA-splicing ligase RtcB KUE09_12895 PF05189 RNA 3'-terminal phosphate cyclase (RTC), insert domain KUE09_12895 PF01137 RNA 3'-terminal phosphate cyclase KUE09_12900 PF01546 Peptidase family M20/M25/M40 KUE09_12900 PF07687 Peptidase dimerisation domain KUE09_12910 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) KUE09_12915 PF01817 Chorismate mutase type II KUE09_12915 PF01842 ACT domain KUE09_12915 PF00800 Prephenate dehydratase KUE09_12920 PF00756 Putative esterase KUE09_12925 PF00441 Acyl-CoA dehydrogenase, C-terminal domain KUE09_12925 PF02771 Acyl-CoA dehydrogenase, N-terminal domain KUE09_12925 PF02770 Acyl-CoA dehydrogenase, middle domain KUE09_12930 PF00375 Sodium:dicarboxylate symporter family KUE09_12935 PF00591 Glycosyl transferase family, a/b domain KUE09_12935 PF02885 Glycosyl transferase family, helical bundle domain KUE09_12940 PF07023 Protein of unknown function (DUF1315) KUE09_12945 PF01513 ATP-NAD kinase KUE09_12950 PF00905 Penicillin binding protein transpeptidase domain KUE09_12950 PF00912 Transglycosylase KUE09_12950 PF14814 Bifunctional transglycosylase second domain KUE09_12960 PF00293 NUDIX domain KUE09_12970 PF08521 Two-component sensor kinase N-terminal KUE09_12970 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KUE09_12970 PF00512 His Kinase A (phospho-acceptor) domain KUE09_12975 PF00486 Transcriptional regulatory protein, C terminal KUE09_12975 PF00072 Response regulator receiver domain KUE09_12985 PF00437 Type II/IV secretion system protein KUE09_12985 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain KUE09_12995 PF01980 tRNA-methyltransferase O KUE09_12995 PF18389 TrmO C-terminal domain KUE09_13000 PF00970 Oxidoreductase FAD-binding domain KUE09_13000 PF00175 Oxidoreductase NAD-binding domain KUE09_13005 PF02567 Phenazine biosynthesis-like protein KUE09_13010 PF00155 Aminotransferase class I and II KUE09_13010 PF00392 Bacterial regulatory proteins, gntR family KUE09_13015 PF16325 Peptidase family U32 C-terminal domain KUE09_13015 PF01136 Peptidase family U32 KUE09_13020 PF00037 4Fe-4S binding domain KUE09_13025 PF00893 Small Multidrug Resistance protein KUE09_13030 PF00005 ABC transporter KUE09_13035 PF00528 Binding-protein-dependent transport system inner membrane component KUE09_13040 PF00528 Binding-protein-dependent transport system inner membrane component KUE09_13045 PF00497 Bacterial extracellular solute-binding proteins, family 3 KUE09_13050 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KUE09_13050 PF03466 LysR substrate binding domain KUE09_13055 PF13533 Biotin-lipoyl like KUE09_13060 PF00873 AcrB/AcrD/AcrF family KUE09_13065 PF02321 Outer membrane efflux protein KUE09_13070 PF00464 Serine hydroxymethyltransferase KUE09_13100 PF00005 ABC transporter KUE09_13105 PF01061 ABC-2 type transporter KUE09_13110 PF14489 QueF-like protein KUE09_13110 PF14819 Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term KUE09_13120 PF01098 Cell cycle protein KUE09_13125 PF13406 Transglycosylase SLT domain KUE09_13130 PF05036 Sporulation related domain KUE09_13130 PF03330 Lytic transglycolase KUE09_13150 PF12833 Helix-turn-helix domain KUE09_13160 PF00889 Elongation factor TS KUE09_13165 PF00318 Ribosomal protein S2 KUE09_13170 PF00557 Metallopeptidase family M24 KUE09_13180 PF07690 Major Facilitator Superfamily KUE09_13190 PF07992 Pyridine nucleotide-disulphide oxidoreductase KUE09_13190 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain KUE09_13195 PF04055 Radical SAM superfamily KUE09_13200 PF09317 Domain of unknown function (DUF1974) KUE09_13200 PF02771 Acyl-CoA dehydrogenase, N-terminal domain KUE09_13200 PF00441 Acyl-CoA dehydrogenase, C-terminal domain KUE09_13215 PF00670 S-adenosyl-L-homocysteine hydrolase, NAD binding domain KUE09_13215 PF05221 S-adenosyl-L-homocysteine hydrolase KUE09_13220 PF02219 Methylenetetrahydrofolate reductase KUE09_13225 PF04452 RNA methyltransferase KUE09_13230 PF00563 EAL domain KUE09_13230 PF00990 Diguanylate cyclase, GGDEF domain KUE09_13230 PF03707 Bacterial signalling protein N terminal repeat KUE09_13235 PF00390 Malic enzyme, N-terminal domain KUE09_13235 PF03949 Malic enzyme, NAD binding domain KUE09_13235 PF01515 Phosphate acetyl/butaryl transferase KUE09_13240 PF12627 Probable RNA and SrmB- binding site of polymerase A KUE09_13240 PF01743 Poly A polymerase head domain KUE09_13245 PF13180 PDZ domain KUE09_13250 PF01784 NIF3 (NGG1p interacting factor 3) KUE09_13255 PF02777 Iron/manganese superoxide dismutases, C-terminal domain KUE09_13255 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain KUE09_13290 PF01040 UbiA prenyltransferase family KUE09_13295 PF04345 Chorismate lyase KUE09_13300 PF00120 Glutamine synthetase, catalytic domain KUE09_13300 PF03951 Glutamine synthetase, beta-Grasp domain KUE09_13305 PF00854 POT family KUE09_13315 PF00117 Glutamine amidotransferase class-I KUE09_13320 PF11838 ERAP1-like C-terminal domain KUE09_13320 PF01433 Peptidase family M1 domain KUE09_13325 PF07715 TonB-dependent Receptor Plug Domain KUE09_13325 PF00593 TonB dependent receptor KUE09_13330 PF00591 Glycosyl transferase family, a/b domain KUE09_13330 PF02885 Glycosyl transferase family, helical bundle domain KUE09_13335 PF00218 Indole-3-glycerol phosphate synthase KUE09_13340 PF01713 Smr domain KUE09_13350 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase KUE09_13350 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain KUE09_13355 PF00111 2Fe-2S iron-sulfur cluster binding domain KUE09_13355 PF01799 [2Fe-2S] binding domain KUE09_13360 PF01227 GTP cyclohydrolase I KUE09_13365 PF00144 Beta-lactamase KUE09_13380 PF05675 Protein of unknown function (DUF817) KUE09_13385 PF01208 Uroporphyrinogen decarboxylase (URO-D) KUE09_13395 PF00425 chorismate binding enzyme KUE09_13400 PF17837 4'-phosphopantetheinyl transferase N-terminal domain KUE09_13400 PF01648 4'-phosphopantetheinyl transferase superfamily KUE09_13405 PF00975 Thioesterase domain KUE09_13410 PF00005 ABC transporter KUE09_13415 PF00005 ABC transporter KUE09_13420 PF00282 Pyridoxal-dependent decarboxylase conserved domain KUE09_13425 PF00857 Isochorismatase family KUE09_13425 PF00550 Phosphopantetheine attachment site KUE09_13430 PF00501 AMP-binding enzyme KUE09_13430 PF13193 AMP-binding enzyme C-terminal domain KUE09_13435 PF00501 AMP-binding enzyme KUE09_13435 PF00668 Condensation domain KUE09_13435 PF00550 Phosphopantetheine attachment site KUE09_13440 PF13434 L-lysine 6-monooxygenase (NADPH-requiring) KUE09_13445 PF07715 TonB-dependent Receptor Plug Domain KUE09_13445 PF00593 TonB dependent receptor KUE09_13450 PF01497 Periplasmic binding protein KUE09_13455 PF00005 ABC transporter KUE09_13460 PF01032 FecCD transport family KUE09_13465 PF01032 FecCD transport family KUE09_13470 PF00501 AMP-binding enzyme KUE09_13470 PF13193 AMP-binding enzyme C-terminal domain KUE09_13470 PF00668 Condensation domain KUE09_13470 PF00550 Phosphopantetheine attachment site KUE09_13470 PF00975 Thioesterase domain KUE09_13475 PF00501 AMP-binding enzyme KUE09_13475 PF13193 AMP-binding enzyme C-terminal domain KUE09_13475 PF00668 Condensation domain KUE09_13475 PF00550 Phosphopantetheine attachment site KUE09_13485 PF08348 YheO-like PAS domain KUE09_13485 PF13309 HTH domain KUE09_13490 PF00291 Pyridoxal-phosphate dependent enzyme KUE09_13495 PF02678 Pirin KUE09_13495 PF17954 Quercetinase C-terminal cupin domain KUE09_13535 PF04328 Selenoprotein, putative KUE09_13540 PF02554 Carbon starvation protein CstA KUE09_13540 PF13722 5TM C-terminal transporter carbon starvation CstA KUE09_13545 PF09285 Elongation factor P, C-terminal KUE09_13545 PF08207 Elongation factor P (EF-P) KOW-like domain KUE09_13545 PF01132 Elongation factor P (EF-P) OB domain KUE09_13550 PF04055 Radical SAM superfamily KUE09_13560 PF12792 CSS motif domain associated with EAL KUE09_13560 PF00563 EAL domain KUE09_13565 PF01197 Ribosomal protein L31 KUE09_13570 PF13593 SBF-like CPA transporter family (DUF4137) KUE09_13575 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily KUE09_13580 PF07690 Major Facilitator Superfamily KUE09_13585 PF05362 Lon protease (S16) C-terminal proteolytic domain KUE09_13585 PF13654 AAA domain KUE09_13590 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KUE09_13590 PF03466 LysR substrate binding domain KUE09_13595 PF01476 LysM domain KUE09_13595 PF01551 Peptidase family M23 KUE09_13600 PF01975 Survival protein SurE KUE09_13615 PF00768 D-alanyl-D-alanine carboxypeptidase KUE09_13615 PF07943 Penicillin-binding protein 5, C-terminal domain KUE09_13620 PF00132 Bacterial transferase hexapeptide (six repeats) KUE09_13625 PF00293 NUDIX domain KUE09_13625 PF13344 Haloacid dehalogenase-like hydrolase KUE09_13635 PF04356 Protein of unknown function (DUF489) KUE09_13640 PF00206 Lyase KUE09_13640 PF08328 Adenylosuccinate lyase C-terminal KUE09_13655 PF01343 Peptidase family S49 KUE09_13655 PF08496 Peptidase family S49 N-terminal KUE09_13660 PF00005 ABC transporter KUE09_13665 PF00528 Binding-protein-dependent transport system inner membrane component KUE09_13670 PF00528 Binding-protein-dependent transport system inner membrane component KUE09_13675 PF12849 PBP superfamily domain KUE09_13680 PF00324 Amino acid permease KUE09_13685 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain KUE09_13685 PF00205 Thiamine pyrophosphate enzyme, central domain KUE09_13685 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain KUE09_13690 PF01037 Lrp/AsnC ligand binding domain KUE09_13695 PF00171 Aldehyde dehydrogenase family KUE09_13700 PF00282 Pyridoxal-dependent decarboxylase conserved domain KUE09_13705 PF00202 Aminotransferase class-III KUE09_13715 PF17754 MftR C-terminal domain KUE09_13715 PF00440 Bacterial regulatory proteins, tetR family KUE09_13725 PF00487 Fatty acid desaturase KUE09_13730 PF00111 2Fe-2S iron-sulfur cluster binding domain KUE09_13730 PF00175 Oxidoreductase NAD-binding domain KUE09_13730 PF00970 Oxidoreductase FAD-binding domain KUE09_13735 PF00440 Bacterial regulatory proteins, tetR family KUE09_13745 PF18339 RapA N-terminal Tudor like domain 1 KUE09_13745 PF18337 RapA N-terminal Tudor like domain KUE09_13745 PF00176 SNF2 family N-terminal domain KUE09_13745 PF12137 RNA polymerase recycling family C-terminal KUE09_13745 PF00271 Helicase conserved C-terminal domain KUE09_13750 PF00849 RNA pseudouridylate synthase KUE09_13760 PF00202 Aminotransferase class-III KUE09_13765 PF02581 Thiamine monophosphate synthase KUE09_13775 PF09615 CRISPR-associated protein (Cas_Csy3) KUE09_13780 PF09614 CRISPR-associated protein (Cas_Csy2) KUE09_13785 PF09611 CRISPR-associated protein (Cas_Csy1) KUE09_13795 PF01867 CRISPR associated protein Cas1 KUE09_13820 PF00675 Insulinase (Peptidase family M16) KUE09_13820 PF05193 Peptidase M16 inactive domain KUE09_13825 PF02567 Phenazine biosynthesis-like protein KUE09_13830 PF00375 Sodium:dicarboxylate symporter family KUE09_13835 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KUE09_13835 PF03466 LysR substrate binding domain KUE09_13840 PF06779 Uncharacterised MFS-type transporter YbfB KUE09_13860 PF00180 Isocitrate/isopropylmalate dehydrogenase KUE09_13865 PF00849 RNA pseudouridylate synthase KUE09_13870 PF03971 Monomeric isocitrate dehydrogenase KUE09_13880 PF07943 Penicillin-binding protein 5, C-terminal domain KUE09_13880 PF00768 D-alanyl-D-alanine carboxypeptidase KUE09_13885 PF07992 Pyridine nucleotide-disulphide oxidoreductase KUE09_13890 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase KUE09_13895 PF03441 FAD binding domain of DNA photolyase KUE09_13895 PF00875 DNA photolyase KUE09_13925 PF02350 UDP-N-acetylglucosamine 2-epimerase KUE09_13940 PF03060 Nitronate monooxygenase KUE09_13945 PF01207 Dihydrouridine synthase (Dus) KUE09_13950 PF07759 Protein of unknown function (DUF1615) KUE09_13960 PF01472 PUA domain KUE09_13960 PF00696 Amino acid kinase family KUE09_13965 PF01926 50S ribosome-binding GTPase KUE09_13965 PF01018 GTP1/OBG KUE09_13980 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain KUE09_13980 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain KUE09_13985 PF00892 EamA-like transporter family KUE09_13995 PF12344 Ultra-violet resistance protein B KUE09_13995 PF17757 UvrB interaction domain KUE09_13995 PF04851 Type III restriction enzyme, res subunit KUE09_13995 PF02151 UvrB/uvrC motif KUE09_13995 PF00271 Helicase conserved C-terminal domain KUE09_14005 PF17151 Periplasmic sensor domain KUE09_14005 PF00990 Diguanylate cyclase, GGDEF domain KUE09_14015 PF00155 Aminotransferase class I and II KUE09_14045 PF00106 short chain dehydrogenase KUE09_14050 PF06175 tRNA-(MS[2]IO[6]A)-hydroxylase (MiaE) KUE09_14055 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ KUE09_14060 PF11967 Recombination protein O N terminal KUE09_14060 PF02565 Recombination protein O C terminal KUE09_14070 PF07650 KH domain KUE09_14070 PF01926 50S ribosome-binding GTPase KUE09_14075 PF00035 Double-stranded RNA binding motif KUE09_14075 PF14622 Ribonuclease-III-like KUE09_14085 PF10502 Signal peptidase, peptidase S26 KUE09_14090 PF03144 Elongation factor Tu domain 2 KUE09_14090 PF00009 Elongation factor Tu GTP binding domain KUE09_14090 PF00679 Elongation factor G C-terminus KUE09_14090 PF06421 GTP-binding protein LepA C-terminus KUE09_14100 PF13180 PDZ domain KUE09_14105 PF02910 Fumarate reductase flavoprotein C-term KUE09_14105 PF00890 FAD binding domain KUE09_14115 PF02223 Thymidylate kinase KUE09_14120 PF02618 YceG-like family KUE09_14125 PF01063 Amino-transferase class IV KUE09_14140 PF00528 Binding-protein-dependent transport system inner membrane component KUE09_14145 PF00528 Binding-protein-dependent transport system inner membrane component KUE09_14150 PF00005 ABC transporter KUE09_14150 PF12857 TOBE-like domain KUE09_14155 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KUE09_14155 PF03466 LysR substrate binding domain KUE09_14165 PF14805 Tetrahydrodipicolinate N-succinyltransferase N-terminal KUE09_14165 PF14602 Hexapeptide repeat of succinyl-transferase KUE09_14165 PF00132 Bacterial transferase hexapeptide (six repeats) KUE09_14175 PF06508 Queuosine biosynthesis protein QueC KUE09_14190 PF00578 AhpC/TSA family KUE09_14200 PF00293 NUDIX domain KUE09_14200 PF01467 Cytidylyltransferase-like KUE09_14205 PF00378 Enoyl-CoA hydratase/isomerase KUE09_14210 PF01784 NIF3 (NGG1p interacting factor 3) KUE09_14215 PF07690 Major Facilitator Superfamily KUE09_14220 PF18076 Formylglycinamide ribonucleotide amidotransferase N-terminal KUE09_14220 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain KUE09_14220 PF02769 AIR synthase related protein, C-terminal domain KUE09_14225 PF01966 HD domain KUE09_14230 PF01330 RuvA N terminal domain KUE09_14230 PF07499 RuvA, C-terminal domain KUE09_14235 PF17864 RuvB AAA lid domain KUE09_14235 PF05491 RuvB C-terminal winged helix domain KUE09_14235 PF05496 Holliday junction DNA helicase RuvB P-loop domain KUE09_14240 PF07687 Peptidase dimerisation domain KUE09_14240 PF01546 Peptidase family M20/M25/M40 KUE09_14245 PF03061 Thioesterase superfamily KUE09_14250 PF01618 MotA/TolQ/ExbB proton channel family KUE09_14255 PF02472 Biopolymer transport protein ExbD/TolR KUE09_14265 PF04052 TolB amino-terminal domain KUE09_14265 PF07676 WD40-like Beta Propeller Repeat KUE09_14270 PF00691 OmpA family KUE09_14280 PF00316 Fructose-1-6-bisphosphatase, N-terminal domain KUE09_14285 PF00588 SpoU rRNA Methylase family KUE09_14285 PF08032 RNA 2'-O ribose methyltransferase substrate binding KUE09_14315 PF00308 Bacterial dnaA protein KUE09_14315 PF08299 Bacterial dnaA protein helix-turn-helix KUE09_14315 PF11638 DnaA N-terminal domain KUE09_14320 PF01594 AI-2E family transporter KUE09_14325 PF00586 AIR synthase related protein, N-terminal domain KUE09_14325 PF02769 AIR synthase related protein, C-terminal domain KUE09_14330 PF00551 Formyl transferase KUE09_14335 PF12697 Alpha/beta hydrolase family KUE09_14340 PF06965 Na+/H+ antiporter 1 KUE09_14340 PF01343 Peptidase family S49 KUE09_14350 PF03772 Competence protein KUE09_14350 PF13567 Domain of unknown function (DUF4131) KUE09_14350 PF00753 Metallo-beta-lactamase superfamily KUE09_14355 PF00005 ABC transporter KUE09_14360 PF02687 FtsX-like permease family KUE09_14360 PF12704 MacB-like periplasmic core domain KUE09_14370 PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 KUE09_14385 PF00266 Aminotransferase class-V KUE09_14395 PF13533 Biotin-lipoyl like KUE09_14415 PF00535 Glycosyl transferase family 2 KUE09_14440 PF03989 DNA gyrase C-terminal domain, beta-propeller KUE09_14440 PF00521 DNA gyrase/topoisomerase IV, subunit A KUE09_14445 PF00766 Electron transfer flavoprotein FAD-binding domain KUE09_14445 PF01012 Electron transfer flavoprotein domain KUE09_14450 PF01012 Electron transfer flavoprotein domain KUE09_14455 PF02899 Phage integrase, N-terminal SAM-like domain KUE09_14455 PF00589 Phage integrase family KUE09_14460 PF01810 LysE type translocator KUE09_14465 PF01678 Diaminopimelate epimerase KUE09_14470 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain KUE09_14470 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain KUE09_14480 PF00324 Amino acid permease KUE09_14485 PF18073 Rubredoxin metal binding domain KUE09_14495 PF00152 tRNA synthetases class II (D, K and N) KUE09_14500 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain KUE09_14500 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain KUE09_14500 PF11890 Domain of unknown function (DUF3410) KUE09_14505 PF06803 Protein of unknown function (DUF1232) KUE09_14510 PF02634 FdhD/NarQ family KUE09_14515 PF00384 Molybdopterin oxidoreductase KUE09_14520 PF02595 Glycerate kinase family KUE09_14535 PF00881 Nitroreductase family KUE09_14565 PF09857 Putative toxin of bacterial toxin-antitoxin pair KUE09_14575 PF00668 Condensation domain KUE09_14575 PF13193 AMP-binding enzyme C-terminal domain KUE09_14575 PF00501 AMP-binding enzyme KUE09_14575 PF00975 Thioesterase domain KUE09_14575 PF00550 Phosphopantetheine attachment site KUE09_14590 PF03449 Transcription elongation factor, N-terminal KUE09_14590 PF01272 Transcription elongation factor, GreA/GreB, C-term KUE09_14600 PF01464 Transglycosylase SLT domain KUE09_14600 PF00497 Bacterial extracellular solute-binding proteins, family 3 KUE09_14610 PF01171 PP-loop family KUE09_14615 PF01464 Transglycosylase SLT domain KUE09_14620 PF01435 Peptidase family M48 KUE09_14630 PF00873 AcrB/AcrD/AcrF family KUE09_14635 PF03009 Glycerophosphoryl diester phosphodiesterase family KUE09_14645 PF01219 Prokaryotic diacylglycerol kinase KUE09_14650 PF00118 TCP-1/cpn60 chaperonin family KUE09_14655 PF00166 Chaperonin 10 Kd subunit KUE09_14660 PF00149 Calcineurin-like phosphoesterase KUE09_14665 PF00781 Diacylglycerol kinase catalytic domain KUE09_14670 PF00821 Phosphoenolpyruvate carboxykinase C-terminal P-loop domain KUE09_14670 PF17297 Phosphoenolpyruvate carboxykinase N-terminal domain KUE09_14675 PF16901 C-terminal domain of alpha-glycerophosphate oxidase KUE09_14675 PF01266 FAD dependent oxidoreductase KUE09_14680 PF00370 FGGY family of carbohydrate kinases, N-terminal domain KUE09_14680 PF02782 FGGY family of carbohydrate kinases, C-terminal domain KUE09_14685 PF00083 Sugar (and other) transporter KUE09_14700 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain KUE09_14700 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain KUE09_14715 PF09423 PhoD-like phosphatase KUE09_14715 PF16655 PhoD-like phosphatase, N-terminal domain KUE09_14735 PF00809 Pterin binding enzyme KUE09_14740 PF00004 ATPase family associated with various cellular activities (AAA) KUE09_14740 PF17862 AAA+ lid domain KUE09_14740 PF06480 FtsH Extracellular KUE09_14740 PF01434 Peptidase family M41 KUE09_14745 PF01728 FtsJ-like methyltransferase KUE09_14750 PF01985 CRS1 / YhbY (CRM) domain KUE09_14765 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain KUE09_14765 PF00117 Glutamine amidotransferase class-I KUE09_14770 PF02142 MGS-like domain KUE09_14770 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain KUE09_14770 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain KUE09_14775 PF03449 Transcription elongation factor, N-terminal KUE09_14775 PF01272 Transcription elongation factor, GreA/GreB, C-term KUE09_14780 PF00132 Bacterial transferase hexapeptide (six repeats) KUE09_14785 PF00582 Universal stress protein family KUE09_14790 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain KUE09_14800 PF09587 Bacterial capsule synthesis protein PGA_cap KUE09_14815 PF00999 Sodium/hydrogen exchanger family KUE09_14820 PF04228 Putative neutral zinc metallopeptidase KUE09_14825 PF05661 Protein of unknown function (DUF808) KUE09_14830 PF00579 tRNA synthetases class I (W and Y) KUE09_14835 PF02629 CoA binding domain KUE09_14835 PF00549 CoA-ligase KUE09_14840 PF00549 CoA-ligase KUE09_14840 PF08442 ATP-grasp domain KUE09_14845 PF07992 Pyridine nucleotide-disulphide oxidoreductase KUE09_14845 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain KUE09_14850 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) KUE09_14850 PF00364 Biotin-requiring enzyme KUE09_14850 PF02817 e3 binding domain KUE09_14855 PF16078 2-oxoglutarate dehydrogenase N-terminus KUE09_14855 PF00676 Dehydrogenase E1 component KUE09_14855 PF16870 2-oxoglutarate dehydrogenase C-terminal KUE09_14855 PF02779 Transketolase, pyrimidine binding domain KUE09_14870 PF13085 2Fe-2S iron-sulfur cluster binding domain KUE09_14875 PF02910 Fumarate reductase flavoprotein C-term KUE09_14875 PF00890 FAD binding domain KUE09_14880 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit KUE09_14885 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit KUE09_14890 PF00285 Citrate synthase, C-terminal domain KUE09_14900 PF00581 Rhodanese-like domain KUE09_14900 PF17773 UPF0176 acylphosphatase like domain KUE09_14915 PF04545 Sigma-70, region 4 KUE09_14915 PF04539 Sigma-70 region 3 KUE09_14915 PF03979 Sigma-70 factor, region 1.1 KUE09_14915 PF04546 Sigma-70, non-essential region KUE09_14915 PF04542 Sigma-70 region 2 KUE09_14915 PF00140 Sigma-70 factor, region 1.2 KUE09_14920 PF04359 Protein of unknown function (DUF493) KUE09_14925 PF03099 Biotin/lipoate A/B protein ligase family KUE09_14935 PF00465 Iron-containing alcohol dehydrogenase KUE09_14940 PF13520 Amino acid permease KUE09_14945 PF03358 NADPH-dependent FMN reductase KUE09_14950 PF01638 HxlR-like helix-turn-helix KUE09_14955 PF00588 SpoU rRNA Methylase family KUE09_14960 PF10414 Sirohaem synthase dimerisation region KUE09_14960 PF14824 Sirohaem biosynthesis protein central KUE09_14960 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases KUE09_14965 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) KUE09_14965 PF02403 Seryl-tRNA synthetase N-terminal domain KUE09_14975 PF03548 Outer membrane lipoprotein carrier protein LolA KUE09_14980 PF01016 Ribosomal L27 protein KUE09_14985 PF00829 Ribosomal prokaryotic L21 protein KUE09_14995 PF00348 Polyprenyl synthetase KUE09_15005 PF01569 PAP2 superfamily KUE09_15010 PF00529 HlyD membrane-fusion protein of T1SS KUE09_15010 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion KUE09_15015 PF00873 AcrB/AcrD/AcrF family KUE09_15020 PF02321 Outer membrane efflux protein KUE09_15025 PF01906 Putative heavy-metal-binding KUE09_15030 PF01906 Putative heavy-metal-binding KUE09_15050 PF08264 Anticodon-binding domain of tRNA KUE09_15050 PF00133 tRNA synthetases class I (I, L, M and V) KUE09_15050 PF10458 Valyl tRNA synthetase tRNA binding arm KUE09_15070 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KUE09_15070 PF03466 LysR substrate binding domain KUE09_15075 PF00909 Ammonium Transporter Family KUE09_15085 PF00512 His Kinase A (phospho-acceptor) domain KUE09_15085 PF08521 Two-component sensor kinase N-terminal KUE09_15085 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KUE09_15090 PF00072 Response regulator receiver domain KUE09_15090 PF00486 Transcriptional regulatory protein, C terminal KUE09_15095 PF08019 Phosphoethanolamine transferase EptA/EptB KUE09_15095 PF00884 Sulfatase KUE09_15115 PF01734 Patatin-like phospholipase KUE09_15125 PF01145 SPFH domain / Band 7 family KUE09_15130 PF04237 YjbR KUE09_15135 PF00348 Polyprenyl synthetase KUE09_15140 PF04303 PrpF protein KUE09_15145 PF00324 Amino acid permease KUE09_15155 PF01965 DJ-1/PfpI family KUE09_15160 PF08240 Alcohol dehydrogenase GroES-like domain KUE09_15160 PF08990 Erythronolide synthase docking KUE09_15160 PF09277 Erythronolide synthase, docking KUE09_15160 PF16197 Ketoacyl-synthetase C-terminal extension KUE09_15160 PF00109 Beta-ketoacyl synthase, N-terminal domain KUE09_15160 PF02801 Beta-ketoacyl synthase, C-terminal domain KUE09_15160 PF08659 KR domain KUE09_15160 PF00550 Phosphopantetheine attachment site KUE09_15160 PF14765 Polyketide synthase dehydratase KUE09_15160 PF00698 Acyl transferase domain KUE09_15165 PF06719 AraC-type transcriptional regulator N-terminus KUE09_15165 PF12833 Helix-turn-helix domain KUE09_15170 PF02673 Bacitracin resistance protein BacA KUE09_15190 PF02525 Flavodoxin-like fold KUE09_15205 PF01507 Phosphoadenosine phosphosulfate reductase family KUE09_15210 PF06974 Protein of unknown function (DUF1298) KUE09_15210 PF03007 Wax ester synthase-like Acyl-CoA acyltransferase domain KUE09_15220 PF00575 S1 RNA binding domain KUE09_15220 PF10150 Ribonuclease E/G family KUE09_15225 PF02545 Maf-like protein KUE09_15230 PF04093 rod shape-determining protein MreD KUE09_15235 PF04085 rod shape-determining protein MreC KUE09_15245 PF02686 Glu-tRNAGln amidotransferase C subunit KUE09_15250 PF01425 Amidase KUE09_15255 PF02934 GatB/GatE catalytic domain KUE09_15255 PF02637 GatB domain KUE09_15280 PF01431 Peptidase family M13 KUE09_15280 PF05649 Peptidase family M13 KUE09_15285 PF05992 SbmA/BacA-like family KUE09_15290 PF13291 ACT domain KUE09_15290 PF00291 Pyridoxal-phosphate dependent enzyme KUE09_15295 PF01734 Patatin-like phospholipase KUE09_15315 PF00881 Nitroreductase family KUE09_15320 PF07690 Major Facilitator Superfamily KUE09_15325 PF12805 FUSC-like inner membrane protein yccS KUE09_15335 PF00175 Oxidoreductase NAD-binding domain KUE09_15335 PF00258 Flavodoxin KUE09_15335 PF00667 FAD binding domain KUE09_15375 PF17969 L,D-transpeptidase C-terminal domain KUE09_15375 PF03734 L,D-transpeptidase catalytic domain KUE09_15380 PF04304 Protein of unknown function (DUF454) KUE09_15390 PF08085 Entericidin EcnA/B family KUE09_15395 PF01546 Peptidase family M20/M25/M40 KUE09_15395 PF07687 Peptidase dimerisation domain KUE09_15405 PF01627 Hpt domain KUE09_15405 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KUE09_15405 PF00072 Response regulator receiver domain KUE09_15405 PF01584 CheW-like domain KUE09_15410 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain KUE09_15410 PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term KUE09_15415 PF01584 CheW-like domain KUE09_15420 PF00072 Response regulator receiver domain KUE09_15425 PF00072 Response regulator receiver domain KUE09_15440 PF00873 AcrB/AcrD/AcrF family KUE09_15445 PF03129 Anticodon binding domain KUE09_15445 PF04073 Aminoacyl-tRNA editing domain KUE09_15445 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) KUE09_15450 PF07411 Domain of unknown function (DUF1508) KUE09_15455 PF03831 PhnA domain KUE09_15455 PF08274 PhnA Zinc-Ribbon KUE09_15460 PF04343 Protein of unknown function, DUF488 KUE09_15470 PF01571 Aminomethyltransferase folate-binding domain KUE09_15475 PF10411 Disulfide bond isomerase protein N-terminus KUE09_15475 PF13098 Thioredoxin-like domain KUE09_15485 PF03547 Membrane transport protein KUE09_15490 PF00724 NADH:flavin oxidoreductase / NADH oxidase family KUE09_15495 PF00593 TonB dependent receptor KUE09_15495 PF07715 TonB-dependent Receptor Plug Domain KUE09_15500 PF02245 Methylpurine-DNA glycosylase (MPG) KUE09_15505 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain KUE09_15505 PF06827 Zinc finger found in FPG and IleRS KUE09_15505 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain KUE09_15520 PF01741 Large-conductance mechanosensitive channel, MscL KUE09_15525 PF00679 Elongation factor G C-terminus KUE09_15525 PF03144 Elongation factor Tu domain 2 KUE09_15525 PF00009 Elongation factor Tu GTP binding domain KUE09_15530 PF00860 Permease family KUE09_15535 PF08468 Methyltransferase small domain N-terminal KUE09_15535 PF05175 Methyltransferase small domain KUE09_15540 PF00324 Amino acid permease KUE09_15545 PF01139 tRNA-splicing ligase RtcB KUE09_15555 PF13505 Outer membrane protein beta-barrel domain KUE09_15555 PF00691 OmpA family KUE09_15565 PF02803 Thiolase, C-terminal domain KUE09_15565 PF00108 Thiolase, N-terminal domain KUE09_15575 PF00893 Small Multidrug Resistance protein KUE09_15585 PF01077 Nitrite and sulphite reductase 4Fe-4S domain KUE09_15585 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain KUE09_15590 PF01011 PQQ enzyme repeat KUE09_15595 PF04966 Carbohydrate-selective porin, OprB family KUE09_15600 PF02515 CoA-transferase family III KUE09_15605 PF12833 Helix-turn-helix domain KUE09_15605 PF02311 AraC-like ligand binding domain KUE09_15610 PF02803 Thiolase, C-terminal domain KUE09_15610 PF00108 Thiolase, N-terminal domain KUE09_15615 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain KUE09_15615 PF00378 Enoyl-CoA hydratase/isomerase KUE09_15615 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain KUE09_15630 PF13673 Acetyltransferase (GNAT) domain KUE09_15640 PF03006 Haemolysin-III related KUE09_15645 PF00083 Sugar (and other) transporter KUE09_15645 PF07690 Major Facilitator Superfamily KUE09_15655 PF01043 SecA preprotein cross-linking domain KUE09_15655 PF07516 SecA Wing and Scaffold domain KUE09_15655 PF02810 SEC-C motif KUE09_15655 PF07517 SecA DEAD-like domain KUE09_15660 PF10417 C-terminal domain of 1-Cys peroxiredoxin KUE09_15660 PF00578 AhpC/TSA family KUE09_15665 PF00753 Metallo-beta-lactamase superfamily KUE09_15680 PF02875 Mur ligase family, glutamate ligase domain KUE09_15680 PF08245 Mur ligase middle domain KUE09_15685 PF01039 Carboxyl transferase domain KUE09_15690 PF00290 Tryptophan synthase alpha chain KUE09_15715 PF00291 Pyridoxal-phosphate dependent enzyme KUE09_15720 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase KUE09_15725 PF07715 TonB-dependent Receptor Plug Domain KUE09_15725 PF00593 TonB dependent receptor KUE09_15730 PF01923 Cobalamin adenosyltransferase KUE09_15750 PF02696 Uncharacterized ACR, YdiU/UPF0061 family KUE09_15755 PF00072 Response regulator receiver domain KUE09_15755 PF00486 Transcriptional regulatory protein, C terminal KUE09_15760 PF00672 HAMP domain KUE09_15760 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KUE09_15760 PF00512 His Kinase A (phospho-acceptor) domain KUE09_15770 PF12806 Acetyl-CoA dehydrogenase C-terminal like KUE09_15770 PF00441 Acyl-CoA dehydrogenase, C-terminal domain KUE09_15770 PF02771 Acyl-CoA dehydrogenase, N-terminal domain KUE09_15770 PF02770 Acyl-CoA dehydrogenase, middle domain KUE09_15775 PF00441 Acyl-CoA dehydrogenase, C-terminal domain KUE09_15775 PF12806 Acetyl-CoA dehydrogenase C-terminal like KUE09_15775 PF02770 Acyl-CoA dehydrogenase, middle domain KUE09_15775 PF02771 Acyl-CoA dehydrogenase, N-terminal domain KUE09_15780 PF06146 Phosphate-starvation-inducible E KUE09_15800 PF00593 TonB dependent receptor KUE09_15800 PF07715 TonB-dependent Receptor Plug Domain KUE09_15810 PF00152 tRNA synthetases class II (D, K and N) KUE09_15810 PF02938 GAD domain KUE09_15810 PF01336 OB-fold nucleic acid binding domain KUE09_15825 PF00535 Glycosyl transferase family 2 KUE09_15830 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase KUE09_15835 PF00483 Nucleotidyl transferase KUE09_15840 PF04321 RmlD substrate binding domain KUE09_15845 PF16363 GDP-mannose 4,6 dehydratase KUE09_15860 PF01522 Polysaccharide deacetylase KUE09_15870 PF01063 Amino-transferase class IV KUE09_15875 PF08335 GlnD PII-uridylyltransferase KUE09_15875 PF03710 Glutamate-ammonia ligase adenylyltransferase KUE09_15880 PF00672 HAMP domain KUE09_15880 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KUE09_15880 PF00512 His Kinase A (phospho-acceptor) domain KUE09_15880 PF13426 PAS domain KUE09_15890 PF02547 Queuosine biosynthesis protein KUE09_15905 PF01702 Queuine tRNA-ribosyltransferase KUE09_15910 PF02699 Preprotein translocase subunit KUE09_15915 PF13721 SecD export protein N-terminal TM region KUE09_15915 PF07549 SecD/SecF GG Motif KUE09_15915 PF02355 Protein export membrane protein KUE09_15920 PF07549 SecD/SecF GG Motif KUE09_15920 PF02355 Protein export membrane protein KUE09_15925 PF04127 DNA / pantothenate metabolism flavoprotein KUE09_15925 PF02441 Flavoprotein KUE09_15930 PF04002 RadC-like JAB domain KUE09_15935 PF01062 Bestrophin, RFP-TM, chloride channel KUE09_15940 PF02811 PHP domain KUE09_15945 PF04279 Intracellular septation protein A KUE09_15950 PF03795 YCII-related domain KUE09_15960 PF05430 S-adenosyl-L-methionine-dependent methyltransferase KUE09_15960 PF01266 FAD dependent oxidoreductase KUE09_15970 PF04461 Protein of unknown function (DUF520) KUE09_15980 PF03061 Thioesterase superfamily KUE09_15985 PF00085 Thioredoxin KUE09_15990 PF00561 alpha/beta hydrolase fold KUE09_15995 PF00753 Metallo-beta-lactamase superfamily KUE09_15995 PF04273 Putative phosphatase (DUF442) KUE09_16005 PF07992 Pyridine nucleotide-disulphide oxidoreductase KUE09_16005 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain KUE09_16040 PF17152 Periplasmic sensor domain KUE09_16040 PF00990 Diguanylate cyclase, GGDEF domain KUE09_16045 PF00691 OmpA family KUE09_16045 PF01389 OmpA-like transmembrane domain KUE09_16050 PF00149 Calcineurin-like phosphoesterase KUE09_16050 PF10518 TAT (twin-arginine translocation) pathway signal sequence KUE09_16055 PF13091 PLD-like domain KUE09_16065 PF16360 GTP-binding GTPase Middle Region KUE09_16065 PF13167 GTP-binding GTPase N-terminal KUE09_16065 PF01926 50S ribosome-binding GTPase KUE09_16085 PF00149 Calcineurin-like phosphoesterase KUE09_16090 PF00398 Ribosomal RNA adenine dimethylase KUE09_16095 PF04166 Pyridoxal phosphate biosynthetic protein PdxA KUE09_16100 PF00572 Ribosomal protein L13 KUE09_16105 PF00380 Ribosomal protein S9/S16 KUE09_16110 PF13417 Glutathione S-transferase, N-terminal domain KUE09_16110 PF00043 Glutathione S-transferase, C-terminal domain KUE09_16115 PF04386 Stringent starvation protein B KUE09_16125 PF02785 Biotin carboxylase C-terminal domain KUE09_16125 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain KUE09_16125 PF00289 Biotin carboxylase, N-terminal domain KUE09_16125 PF00364 Biotin-requiring enzyme KUE09_16135 PF02771 Acyl-CoA dehydrogenase, N-terminal domain KUE09_16135 PF02770 Acyl-CoA dehydrogenase, middle domain KUE09_16135 PF00441 Acyl-CoA dehydrogenase, C-terminal domain KUE09_16140 PF01039 Carboxyl transferase domain KUE09_16155 PF00440 Bacterial regulatory proteins, tetR family KUE09_16155 PF17932 Tetracyclin repressor-like, C-terminal domain KUE09_16215 PF00795 Carbon-nitrogen hydrolase KUE09_16225 PF01047 MarR family KUE09_16230 PF02566 OsmC-like protein KUE09_16235 PF00437 Type II/IV secretion system protein KUE09_16255 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain KUE09_16255 PF01612 3'-5' exonuclease KUE09_16255 PF00476 DNA polymerase family A KUE09_16255 PF01367 5'-3' exonuclease, C-terminal SAM fold KUE09_16260 PF02325 YGGT family KUE09_16265 PF03807 NADP oxidoreductase coenzyme F420-dependent KUE09_16265 PF14748 Pyrroline-5-carboxylate reductase dimerisation KUE09_16270 PF01171 PP-loop family KUE09_16270 PF09179 TilS substrate binding domain KUE09_16270 PF11734 TilS substrate C-terminal domain KUE09_16275 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit KUE09_16280 PF02541 Ppx/GppA phosphatase family KUE09_16285 PF00085 Thioredoxin KUE09_16290 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain KUE09_16290 PF07498 Rho termination factor, N-terminal domain KUE09_16290 PF07497 Rho termination factor, RNA-binding domain KUE09_16305 PF00216 Bacterial DNA-binding protein KUE09_16310 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain KUE09_16310 PF01588 Putative tRNA binding domain KUE09_16310 PF03483 B3/4 domain KUE09_16310 PF03147 Ferredoxin-fold anticodon binding domain KUE09_16310 PF03484 tRNA synthetase B5 domain KUE09_16315 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain KUE09_16315 PF01409 tRNA synthetases class II core domain (F) KUE09_16335 PF00453 Ribosomal protein L20 KUE09_16340 PF01632 Ribosomal protein L35 KUE09_16345 PF07690 Major Facilitator Superfamily KUE09_16350 PF09335 SNARE associated Golgi protein KUE09_16355 PF00043 Glutathione S-transferase, C-terminal domain KUE09_16355 PF02798 Glutathione S-transferase, N-terminal domain KUE09_16360 PF05198 Translation initiation factor IF-3, N-terminal domain KUE09_16360 PF00707 Translation initiation factor IF-3, C-terminal domain KUE09_16365 PF02824 TGS domain KUE09_16365 PF03129 Anticodon binding domain KUE09_16365 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) KUE09_16365 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain KUE09_16370 PF00501 AMP-binding enzyme KUE09_16370 PF13193 AMP-binding enzyme C-terminal domain KUE09_16375 PF04751 Protein of unknown function (DUF615) KUE09_16380 PF00381 PTS HPr component phosphorylation site KUE09_16385 PF03668 P-loop ATPase protein family KUE09_16390 PF02569 Pantoate-beta-alanine ligase KUE09_16395 PF02548 Ketopantoate hydroxymethyltransferase KUE09_16400 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) KUE09_16405 PF12627 Probable RNA and SrmB- binding site of polymerase A KUE09_16405 PF12626 Polymerase A arginine-rich C-terminus KUE09_16405 PF01743 Poly A polymerase head domain KUE09_16415 PF03819 MazG nucleotide pyrophosphohydrolase domain KUE09_16425 PF02824 TGS domain KUE09_16425 PF13291 ACT domain KUE09_16425 PF04607 Region found in RelA / SpoT proteins KUE09_16430 PF05958 tRNA (Uracil-5-)-methyltransferase KUE09_16440 PF00291 Pyridoxal-phosphate dependent enzyme KUE09_16445 PF00672 HAMP domain KUE09_16445 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KUE09_16445 PF00512 His Kinase A (phospho-acceptor) domain KUE09_16445 PF01627 Hpt domain KUE09_16445 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) KUE09_16445 PF00072 Response regulator receiver domain KUE09_16450 PF00378 Enoyl-CoA hydratase/isomerase KUE09_16455 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase KUE09_16455 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase KUE09_16460 PF01261 Xylose isomerase-like TIM barrel KUE09_16470 PF00106 short chain dehydrogenase KUE09_16475 PF02233 NAD(P) transhydrogenase beta subunit KUE09_16480 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch KUE09_16485 PF01262 Alanine dehydrogenase/PNT, C-terminal domain KUE09_16485 PF05222 Alanine dehydrogenase/PNT, N-terminal domain KUE09_16490 PF00892 EamA-like transporter family KUE09_16500 PF07690 Major Facilitator Superfamily KUE09_16515 PF03358 NADPH-dependent FMN reductase KUE09_16520 PF01758 Sodium Bile acid symporter family KUE09_16530 PF01022 Bacterial regulatory protein, arsR family KUE09_16535 PF03960 ArsC family KUE09_16545 PF00873 AcrB/AcrD/AcrF family KUE09_16550 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion KUE09_16565 PF07664 Ferrous iron transport protein B C terminus KUE09_16565 PF02421 Ferrous iron transport protein B KUE09_16565 PF07670 Nucleoside recognition KUE09_16575 PF01545 Cation efflux family KUE09_16580 PF13411 MerR HTH family regulatory protein KUE09_16590 PF07732 Multicopper oxidase KUE09_16590 PF07731 Multicopper oxidase KUE09_16590 PF00394 Multicopper oxidase KUE09_16600 PF00486 Transcriptional regulatory protein, C terminal KUE09_16600 PF00072 Response regulator receiver domain KUE09_16605 PF00512 His Kinase A (phospho-acceptor) domain KUE09_16605 PF00672 HAMP domain KUE09_16605 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KUE09_16610 PF04945 YHS domain KUE09_16695 PF00589 Phage integrase family KUE09_16700 PF01207 Dihydrouridine synthase (Dus) KUE09_16710 PF03466 LysR substrate binding domain KUE09_16710 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KUE09_16720 PF00899 ThiF family KUE09_16730 PF00330 Aconitase family (aconitate hydratase) KUE09_16730 PF00694 Aconitase C-terminal domain KUE09_16735 PF01026 TatD related DNase KUE09_16750 PF00009 Elongation factor Tu GTP binding domain KUE09_16750 PF03144 Elongation factor Tu domain 2 KUE09_16750 PF16658 Class II release factor RF3, C-terminal domain KUE09_16775 PF10106 Uncharacterized protein conserved in bacteria (DUF2345) KUE09_16775 PF04717 Type VI secretion system, phage-baseplate injector KUE09_16775 PF13296 Putative type VI secretion system Rhs element Vgr KUE09_16795 PF03707 Bacterial signalling protein N terminal repeat KUE09_16795 PF00990 Diguanylate cyclase, GGDEF domain KUE09_16795 PF00563 EAL domain KUE09_16800 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain KUE09_16800 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain KUE09_16805 PF10369 Small subunit of acetolactate synthase KUE09_16810 PF00205 Thiamine pyrophosphate enzyme, central domain KUE09_16810 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain KUE09_16810 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain KUE09_16820 PF09334 tRNA synthetases class I (M) KUE09_16820 PF08264 Anticodon-binding domain of tRNA KUE09_16820 PF00133 tRNA synthetases class I (I, L, M and V) KUE09_16820 PF13603 Leucyl-tRNA synthetase, Domain 2 KUE09_16835 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion KUE09_16840 PF00005 ABC transporter KUE09_16840 PF02687 FtsX-like permease family KUE09_16840 PF12704 MacB-like periplasmic core domain KUE09_16845 PF02321 Outer membrane efflux protein KUE09_16860 PF00929 Exonuclease KUE09_16865 PF03193 RsgA GTPase KUE09_16875 PF00462 Glutaredoxin KUE09_16880 PF02556 Preprotein translocase subunit SecB KUE09_16890 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal KUE09_16890 PF01926 50S ribosome-binding GTPase KUE09_16895 PF13360 PQQ-like domain KUE09_16905 PF03129 Anticodon binding domain KUE09_16905 PF13393 Histidyl-tRNA synthetase KUE09_16910 PF04551 GcpE protein KUE09_16915 PF13464 Domain of unknown function (DUF4115) KUE09_16925 PF04055 Radical SAM superfamily KUE09_16930 PF00334 Nucleoside diphosphate kinase KUE09_16935 PF04384 Iron-sulphur cluster assembly KUE09_16940 PF01569 PAP2 superfamily KUE09_16945 PF13439 Glycosyltransferase Family 4 KUE09_16945 PF00534 Glycosyl transferases group 1 KUE09_16950 PF11818 C-terminal domain of tail specific protease (DUF3340) KUE09_16950 PF00595 PDZ domain KUE09_16950 PF03572 Peptidase family S41 KUE09_16950 PF17804 Tail specific protease N-terminal domain KUE09_16955 PF00933 Glycosyl hydrolase family 3 N terminal domain KUE09_16965 PF00561 alpha/beta hydrolase fold KUE09_16970 PF00171 Aldehyde dehydrogenase family KUE09_16975 PF00171 Aldehyde dehydrogenase family KUE09_16980 PF01202 Shikimate kinase KUE09_16985 PF02447 GntP family permease KUE09_16990 PF01081 KDPG and KHG aldolase KUE09_16995 PF00920 Dehydratase family KUE09_17000 PF00871 Acetokinase family KUE09_17005 PF07085 DRTGG domain KUE09_17005 PF01515 Phosphate acetyl/butaryl transferase KUE09_17010 PF05681 Fumarate hydratase (Fumerase) KUE09_17010 PF05683 Fumarase C-terminus KUE09_17025 PF07724 AAA domain (Cdc48 subfamily) KUE09_17025 PF10431 C-terminal, D2-small domain, of ClpB protein KUE09_17025 PF06689 ClpX C4-type zinc finger KUE09_17030 PF00574 Clp protease KUE09_17035 PF05697 Bacterial trigger factor protein (TF) KUE09_17035 PF05698 Bacterial trigger factor protein (TF) C-terminus KUE09_17035 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase KUE09_17040 PF07715 TonB-dependent Receptor Plug Domain KUE09_17040 PF00593 TonB dependent receptor KUE09_17045 PF13640 2OG-Fe(II) oxygenase superfamily KUE09_17045 PF18331 PKHD-type hydroxylase C-terminal domain KUE09_17050 PF08502 LeuA allosteric (dimerisation) domain KUE09_17050 PF00682 HMGL-like KUE09_17055 PF00561 alpha/beta hydrolase fold KUE09_17060 PF07021 Methionine biosynthesis protein MetW KUE09_17060 PF00561 alpha/beta hydrolase fold KUE09_17075 PF01725 Ham1 family KUE09_17085 PF02416 mttA/Hcf106 family KUE09_17090 PF02416 mttA/Hcf106 family KUE09_17095 PF00902 Sec-independent protein translocase protein (TatC) KUE09_17115 PF01790 Prolipoprotein diacylglyceryl transferase KUE09_17130 PF00303 Thymidylate synthase KUE09_17135 PF00186 Dihydrofolate reductase KUE09_17145 PF01625 Peptide methionine sulfoxide reductase KUE09_17155 PF01618 MotA/TolQ/ExbB proton channel family KUE09_17165 PF01842 ACT domain KUE09_17165 PF00551 Formyl transferase KUE09_17175 PF00171 Aldehyde dehydrogenase family KUE09_17180 PF00830 Ribosomal L28 family KUE09_17185 PF00471 Ribosomal protein L33 KUE09_17190 PF00999 Sodium/hydrogen exchanger family KUE09_17190 PF02254 TrkA-N domain KUE09_17210 PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) KUE09_17215 PF00580 UvrD/REP helicase N-terminal domain KUE09_17215 PF13361 UvrD-like helicase C-terminal domain KUE09_17230 PF01751 Toprim domain KUE09_17230 PF01396 Topoisomerase DNA binding C4 zinc finger KUE09_17230 PF08272 Topoisomerase I zinc-ribbon-like KUE09_17230 PF01131 DNA topoisomerase KUE09_17240 PF01638 HxlR-like helix-turn-helix KUE09_17245 PF08240 Alcohol dehydrogenase GroES-like domain KUE09_17245 PF00107 Zinc-binding dehydrogenase KUE09_17250 PF04102 SlyX KUE09_17255 PF00005 ABC transporter KUE09_17255 PF16326 ABC transporter C-terminal domain KUE09_17255 PF12848 ABC transporter KUE09_17265 PF01810 LysE type translocator KUE09_17270 PF03279 Bacterial lipid A biosynthesis acyltransferase KUE09_17280 PF00375 Sodium:dicarboxylate symporter family KUE09_17290 PF01118 Semialdehyde dehydrogenase, NAD binding domain KUE09_17290 PF02774 Semialdehyde dehydrogenase, dimerisation domain KUE09_17310 PF01416 tRNA pseudouridine synthase KUE09_17320 PF01176 Translation initiation factor 1A / IF-1 KUE09_17335 PF00180 Isocitrate/isopropylmalate dehydrogenase KUE09_17345 PF00694 Aconitase C-terminal domain KUE09_17350 PF00330 Aconitase family (aconitate hydratase) KUE09_17360 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KUE09_17360 PF03466 LysR substrate binding domain KUE09_17370 PF00293 NUDIX domain KUE09_17375 PF02896 PEP-utilising enzyme, TIM barrel domain KUE09_17375 PF00391 PEP-utilising enzyme, mobile domain KUE09_17375 PF01590 GAF domain KUE09_17375 PF05524 PEP-utilising enzyme, N-terminal KUE09_17380 PF00141 Peroxidase KUE09_17385 PF12706 Beta-lactamase superfamily domain KUE09_17390 PF03466 LysR substrate binding domain KUE09_17390 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KUE09_17400 PF02798 Glutathione S-transferase, N-terminal domain KUE09_17405 PF08279 HTH domain KUE09_17405 PF13280 WYL domain KUE09_17410 PF13419 Haloacid dehalogenase-like hydrolase KUE09_17415 PF01479 S4 domain KUE09_17415 PF00849 RNA pseudouridylate synthase KUE09_17420 PF00575 S1 RNA binding domain KUE09_17420 PF12111 Polyribonucleotide phosphorylase C terminal KUE09_17420 PF10150 Ribonuclease E/G family KUE09_17425 PF00501 AMP-binding enzyme KUE09_17425 PF13193 AMP-binding enzyme C-terminal domain KUE09_17440 PF03466 LysR substrate binding domain KUE09_17440 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KUE09_17445 PF00106 short chain dehydrogenase KUE09_17450 PF06969 HemN C-terminal domain KUE09_17450 PF04055 Radical SAM superfamily KUE09_17460 PF01554 MatE KUE09_17465 PF08028 Acyl-CoA dehydrogenase, C-terminal domain KUE09_17465 PF02770 Acyl-CoA dehydrogenase, middle domain KUE09_17465 PF02771 Acyl-CoA dehydrogenase, N-terminal domain KUE09_17470 PF08028 Acyl-CoA dehydrogenase, C-terminal domain KUE09_17470 PF02771 Acyl-CoA dehydrogenase, N-terminal domain KUE09_17475 PF03109 ABC1 family KUE09_17480 PF01197 Ribosomal protein L31 KUE09_17495 PF02537 CrcB-like protein, Camphor Resistance (CrcB) KUE09_17505 PF07992 Pyridine nucleotide-disulphide oxidoreductase KUE09_17505 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster KUE09_17505 PF13247 4Fe-4S dicluster domain KUE09_17515 PF03884 DNA gyrase inhibitor YacG KUE09_17520 PF00753 Metallo-beta-lactamase superfamily KUE09_17525 PF00762 Ferrochelatase KUE09_17535 PF01177 Asp/Glu/Hydantoin racemase KUE09_17555 PF01206 Sulfurtransferase TusA KUE09_17560 PF00571 CBS domain KUE09_17560 PF03471 Transporter associated domain KUE09_17565 PF00795 Carbon-nitrogen hydrolase KUE09_17570 PF01588 Putative tRNA binding domain KUE09_17580 PF08334 Type II secretion system (T2SS), protein G KUE09_17580 PF07963 Prokaryotic N-terminal methylation motif KUE09_17585 PF00482 Type II secretion system (T2SS), protein F KUE09_17590 PF00271 Helicase conserved C-terminal domain KUE09_17590 PF17764 3′ DNA-binding domain (3′BD) KUE09_17590 PF18074 Primosomal protein N C-terminal domain KUE09_17590 PF18319 PriA DNA helicase Cys-rich region (CRR) domain KUE09_17590 PF00270 DEAD/DEAH box helicase KUE09_17595 PF00999 Sodium/hydrogen exchanger family KUE09_17595 PF02254 TrkA-N domain KUE09_17600 PF01430 Hsp33 protein KUE09_17610 PF00226 DnaJ domain KUE09_17610 PF01556 DnaJ C terminal domain KUE09_17620 PF01544 CorA-like Mg2+ transporter protein KUE09_17625 PF00575 S1 RNA binding domain KUE09_17625 PF03725 3' exoribonuclease family, domain 2 KUE09_17625 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain KUE09_17625 PF00013 KH domain KUE09_17625 PF01138 3' exoribonuclease family, domain 1 KUE09_17630 PF00312 Ribosomal protein S15 KUE09_17635 PF00144 Beta-lactamase KUE09_17640 PF13538 UvrD-like helicase C-terminal domain KUE09_17645 PF12705 PD-(D/E)XK nuclease superfamily KUE09_17645 PF00580 UvrD/REP helicase N-terminal domain KUE09_17645 PF13361 UvrD-like helicase C-terminal domain KUE09_17650 PF17946 RecC C-terminal domain KUE09_17660 PF03976 Polyphosphate kinase 2 (PPK2) KUE09_17670 PF01209 ubiE/COQ5 methyltransferase family KUE09_17680 PF03109 ABC1 family KUE09_17685 PF01494 FAD binding domain KUE09_17690 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily KUE09_17700 PF01502 Phosphoribosyl-AMP cyclohydrolase KUE09_17715 PF13244 Domain of unknown function (DUF4040) KUE09_17715 PF04039 Domain related to MnhB subunit of Na+/H+ antiporter KUE09_17715 PF00361 Proton-conducting membrane transporter KUE09_17715 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus KUE09_17720 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L KUE09_17725 PF00361 Proton-conducting membrane transporter KUE09_17730 PF01899 Na+/H+ ion antiporter subunit KUE09_17735 PF04066 Multiple resistance and pH regulation protein F (MrpF / PhaF) KUE09_17740 PF03334 Na+/H+ antiporter subunit KUE09_17745 PF02033 Ribosome-binding factor A KUE09_17750 PF00009 Elongation factor Tu GTP binding domain KUE09_17750 PF11987 Translation-initiation factor 2 KUE09_17750 PF08364 Bacterial translation initiation factor IF-2 associated region KUE09_17750 PF04760 Translation initiation factor IF-2, N-terminal region KUE09_17755 PF13184 NusA-like KH domain KUE09_17755 PF00575 S1 RNA binding domain KUE09_17755 PF08529 NusA N-terminal domain KUE09_17760 PF17384 RimP C-terminal SH3 domain KUE09_17760 PF02576 RimP N-terminal domain KUE09_17780 PF03840 Preprotein translocase SecG subunit KUE09_17785 PF00121 Triosephosphate isomerase KUE09_17790 PF00437 Type II/IV secretion system protein KUE09_17790 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain KUE09_17795 PF00482 Type II secretion system (T2SS), protein F KUE09_17800 PF06750 Bacterial Peptidase A24 N-terminal domain KUE09_17800 PF01478 Type IV leader peptidase family KUE09_17805 PF01121 Dephospho-CoA kinase KUE09_17815 PF00588 SpoU rRNA Methylase family KUE09_17815 PF08032 RNA 2'-O ribose methyltransferase substrate binding KUE09_17820 PF06865 Pyrimidine/purine nucleoside phosphorylase KUE09_17830 PF02463 RecF/RecN/SMC N terminal domain KUE09_17835 PF02622 Uncharacterized ACR, COG1678 KUE09_17840 PF03652 Holliday junction resolvase KUE09_17845 PF13533 Biotin-lipoyl like KUE09_17870 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain KUE09_17870 PF12833 Helix-turn-helix domain KUE09_17870 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain KUE09_17870 PF02805 Metal binding domain of Ada KUE09_17875 PF01066 CDP-alcohol phosphatidyltransferase KUE09_17885 PF01541 GIY-YIG catalytic domain KUE09_17885 PF02151 UvrB/uvrC motif KUE09_17885 PF08459 UvrC Helix-hairpin-helix N-terminal KUE09_17915 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain KUE09_17915 PF00378 Enoyl-CoA hydratase/isomerase KUE09_17915 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain KUE09_17920 PF02803 Thiolase, C-terminal domain KUE09_17920 PF00108 Thiolase, N-terminal domain KUE09_17940 PF09278 MerR, DNA binding KUE09_17940 PF00376 MerR family regulatory protein KUE09_17950 PF01323 DSBA-like thioredoxin domain KUE09_17965 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KUE09_17965 PF00183 Hsp90 protein KUE09_17980 PF03553 Na+/H+ antiporter family KUE09_17980 PF13726 Na+-H+ antiporter family KUE09_18005 PF05000 RNA polymerase Rpb1, domain 4 KUE09_18005 PF00623 RNA polymerase Rpb1, domain 2 KUE09_18005 PF04983 RNA polymerase Rpb1, domain 3 KUE09_18005 PF04998 RNA polymerase Rpb1, domain 5 KUE09_18005 PF04997 RNA polymerase Rpb1, domain 1 KUE09_18010 PF04565 RNA polymerase Rpb2, domain 3 KUE09_18010 PF10385 RNA polymerase beta subunit external 1 domain KUE09_18010 PF00562 RNA polymerase Rpb2, domain 6 KUE09_18010 PF04560 RNA polymerase Rpb2, domain 7 KUE09_18010 PF04563 RNA polymerase beta subunit KUE09_18010 PF04561 RNA polymerase Rpb2, domain 2 KUE09_18015 PF00542 Ribosomal protein L7/L12 C-terminal domain KUE09_18015 PF16320 Ribosomal protein L7/L12 dimerisation domain KUE09_18020 PF00466 Ribosomal protein L10 KUE09_18025 PF00687 Ribosomal protein L1p/L10e family KUE09_18030 PF00298 Ribosomal protein L11, RNA binding domain KUE09_18030 PF03946 Ribosomal protein L11, N-terminal domain KUE09_18035 PF00467 KOW motif KUE09_18035 PF02357 Transcription termination factor nusG KUE09_18040 PF00584 SecE/Sec61-gamma subunits of protein translocation complex KUE09_18050 PF00009 Elongation factor Tu GTP binding domain KUE09_18050 PF03144 Elongation factor Tu domain 2 KUE09_18050 PF03143 Elongation factor Tu C-terminal domain KUE09_18075 PF00425 chorismate binding enzyme KUE09_18075 PF04715 Anthranilate synthase component I, N terminal region KUE09_18080 PF13419 Haloacid dehalogenase-like hydrolase KUE09_18085 PF12401 Protein of unknown function (DUF2662) KUE09_18085 PF00498 FHA domain KUE09_18090 PF00263 Bacterial type II and III secretion system protein KUE09_18090 PF03958 Bacterial type II/III secretion system short domain KUE09_18105 PF00816 H-NS histone family KUE09_18130 PF03900 Porphobilinogen deaminase, C-terminal domain KUE09_18130 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain KUE09_18135 PF04397 LytTr DNA-binding domain KUE09_18135 PF00072 Response regulator receiver domain KUE09_18140 PF06580 Histidine kinase KUE09_18140 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KUE09_18140 PF07694 5TMR of 5TMR-LYT KUE09_18145 PF14698 Argininosuccinate lyase C-terminal KUE09_18145 PF00206 Lyase KUE09_18150 PF04362 Bacterial Fe(2+) trafficking KUE09_18155 PF01895 PhoU domain KUE09_18160 PF02321 Outer membrane efflux protein KUE09_18165 PF00892 EamA-like transporter family KUE09_18180 PF01964 Radical SAM ThiC family KUE09_18180 PF13667 ThiC-associated domain KUE09_18185 PF00293 NUDIX domain KUE09_18190 PF00149 Calcineurin-like phosphoesterase KUE09_18195 PF01258 Prokaryotic dksA/traR C4-type zinc finger KUE09_18200 PF00749 tRNA synthetases class I (E and Q), catalytic domain KUE09_18205 PF01098 Cell cycle protein KUE09_18210 PF02875 Mur ligase family, glutamate ligase domain KUE09_18210 PF08245 Mur ligase middle domain KUE09_18220 PF02421 Ferrous iron transport protein B KUE09_18220 PF07664 Ferrous iron transport protein B C terminus KUE09_18220 PF07670 Nucleoside recognition KUE09_18230 PF00589 Phage integrase family KUE09_18230 PF02899 Phage integrase, N-terminal SAM-like domain KUE09_18235 PF13098 Thioredoxin-like domain KUE09_18235 PF10411 Disulfide bond isomerase protein N-terminus KUE09_18240 PF03447 Homoserine dehydrogenase, NAD binding domain KUE09_18240 PF00742 Homoserine dehydrogenase KUE09_18240 PF01842 ACT domain KUE09_18245 PF00291 Pyridoxal-phosphate dependent enzyme KUE09_18250 PF00768 D-alanyl-D-alanine carboxypeptidase KUE09_18255 PF00072 Response regulator receiver domain KUE09_18255 PF00196 Bacterial regulatory proteins, luxR family KUE09_18260 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KUE09_18260 PF00512 His Kinase A (phospho-acceptor) domain KUE09_18265 PF00072 Response regulator receiver domain KUE09_18265 PF02954 Bacterial regulatory protein, Fis family KUE09_18265 PF00158 Sigma-54 interaction domain KUE09_18270 PF00595 PDZ domain KUE09_18270 PF03572 Peptidase family S41 KUE09_18275 PF06415 BPG-independent PGAM N-terminus (iPGM_N) KUE09_18275 PF01676 Metalloenzyme superfamily KUE09_18280 PF03739 Lipopolysaccharide export system permease LptF/LptG KUE09_18290 PF02789 Cytosol aminopeptidase family, N-terminal domain KUE09_18290 PF00883 Cytosol aminopeptidase family, catalytic domain KUE09_18310 PF00677 Lumazine binding domain KUE09_18320 PF01872 RibD C-terminal domain KUE09_18320 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region KUE09_18325 PF03477 ATP cone domain KUE09_18330 PF00909 Ammonium Transporter Family KUE09_18335 PF00543 Nitrogen regulatory protein P-II KUE09_18345 PF01078 Magnesium chelatase, subunit ChlI KUE09_18345 PF13335 Magnesium chelatase, subunit ChlI C-terminal KUE09_18360 PF00905 Penicillin binding protein transpeptidase domain KUE09_18385 PF00916 Sulfate permease family KUE09_18385 PF01740 STAS domain KUE09_18390 PF00582 Universal stress protein family KUE09_18420 PF00665 Integrase core domain KUE09_18430 PF13335 Magnesium chelatase, subunit ChlI C-terminal KUE09_18430 PF01078 Magnesium chelatase, subunit ChlI KUE09_18435 PF00392 Bacterial regulatory proteins, gntR family KUE09_18435 PF00155 Aminotransferase class I and II KUE09_18445 PF00701 Dihydrodipicolinate synthetase family KUE09_18455 PF03573 outer membrane porin, OprD family KUE09_18460 PF00719 Inorganic pyrophosphatase KUE09_18475 PF13193 AMP-binding enzyme C-terminal domain KUE09_18475 PF00501 AMP-binding enzyme KUE09_18480 PF00521 DNA gyrase/topoisomerase IV, subunit A KUE09_18480 PF03989 DNA gyrase C-terminal domain, beta-propeller KUE09_18485 PF07690 Major Facilitator Superfamily KUE09_18490 PF03458 UPF0126 domain KUE09_18495 PF02810 SEC-C motif KUE09_18500 PF03471 Transporter associated domain KUE09_18500 PF03741 Integral membrane protein TerC family KUE09_18505 PF03641 Possible lysine decarboxylase KUE09_18510 PF07690 Major Facilitator Superfamily KUE09_18520 PF00817 impB/mucB/samB family KUE09_18520 PF11798 IMS family HHH motif KUE09_18520 PF11799 impB/mucB/samB family C-terminal domain KUE09_18525 PF00072 Response regulator receiver domain KUE09_18525 PF00486 Transcriptional regulatory protein, C terminal KUE09_18530 PF00672 HAMP domain KUE09_18530 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KUE09_18530 PF00512 His Kinase A (phospho-acceptor) domain KUE09_18535 PF06123 Inner membrane protein CreD KUE09_18555 PF11842 Domain of unknown function (DUF3362) KUE09_18555 PF04055 Radical SAM superfamily KUE09_18555 PF08497 Radical SAM N-terminal KUE09_18575 PF03358 NADPH-dependent FMN reductase KUE09_18585 PF00291 Pyridoxal-phosphate dependent enzyme KUE09_18645 PF01327 Polypeptide deformylase KUE09_18655 PF17782 DprA winged helix domain KUE09_18655 PF02481 DNA recombination-mediator protein A KUE09_18660 PF01300 Telomere recombination KUE09_18665 PF00892 EamA-like transporter family KUE09_18670 PF00440 Bacterial regulatory proteins, tetR family KUE09_18675 PF07690 Major Facilitator Superfamily KUE09_18685 PF00255 Glutathione peroxidase KUE09_18695 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain KUE09_18700 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain KUE09_18700 PF02874 ATP synthase alpha/beta family, beta-barrel domain KUE09_18705 PF00231 ATP synthase KUE09_18710 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain KUE09_18710 PF00306 ATP synthase alpha/beta chain, C terminal domain KUE09_18710 PF02874 ATP synthase alpha/beta family, beta-barrel domain KUE09_18715 PF00213 ATP synthase delta (OSCP) subunit KUE09_18720 PF00430 ATP synthase B/B' CF(0) KUE09_18725 PF00137 ATP synthase subunit C KUE09_18730 PF00119 ATP synthase A chain KUE09_18750 PF00005 ABC transporter KUE09_18755 PF00950 ABC 3 transport family KUE09_18760 PF01810 LysE type translocator KUE09_18765 PF04261 Dyp-type peroxidase family KUE09_18770 PF00390 Malic enzyme, N-terminal domain KUE09_18770 PF03949 Malic enzyme, NAD binding domain KUE09_18775 PF03485 Arginyl tRNA synthetase N terminal domain KUE09_18775 PF05746 DALR anticodon binding domain KUE09_18775 PF00750 tRNA synthetases class I (R) KUE09_18795 PF02678 Pirin KUE09_18795 PF05726 Pirin C-terminal cupin domain KUE09_18805 PF03551 Transcriptional regulator PadR-like family KUE09_18810 PF13427 Domain of unknown function (DUF4111) KUE09_18810 PF01909 Nucleotidyltransferase domain KUE09_18815 PF02540 NAD synthase KUE09_18815 PF00117 Glutamine amidotransferase class-I KUE09_18815 PF00958 GMP synthase C terminal domain KUE09_18820 PF04286 Protein of unknown function (DUF445) KUE09_18825 PF07681 DoxX KUE09_18830 PF09335 SNARE associated Golgi protein KUE09_18845 PF13614 AAA domain KUE09_18855 PF01722 BolA-like protein KUE09_18870 PF01648 4'-phosphopantetheinyl transferase superfamily KUE09_18875 PF16363 GDP-mannose 4,6 dehydratase KUE09_18895 PF16197 Ketoacyl-synthetase C-terminal extension KUE09_18895 PF00109 Beta-ketoacyl synthase, N-terminal domain KUE09_18895 PF02801 Beta-ketoacyl synthase, C-terminal domain KUE09_18895 PF00550 Phosphopantetheine attachment site KUE09_18895 PF14765 Polyketide synthase dehydratase KUE09_18895 PF00975 Thioesterase domain KUE09_18895 PF08242 Methyltransferase domain KUE09_18900 PF02771 Acyl-CoA dehydrogenase, N-terminal domain KUE09_18900 PF02770 Acyl-CoA dehydrogenase, middle domain KUE09_18900 PF00441 Acyl-CoA dehydrogenase, C-terminal domain KUE09_18905 PF00501 AMP-binding enzyme KUE09_18910 PF00196 Bacterial regulatory proteins, luxR family KUE09_18910 PF03472 Autoinducer binding domain KUE09_18920 PF00765 Autoinducer synthase KUE09_18925 PF00083 Sugar (and other) transporter KUE09_18925 PF07690 Major Facilitator Superfamily KUE09_18930 PF00378 Enoyl-CoA hydratase/isomerase KUE09_18935 PF00378 Enoyl-CoA hydratase/isomerase KUE09_18940 PF00441 Acyl-CoA dehydrogenase, C-terminal domain KUE09_18940 PF02770 Acyl-CoA dehydrogenase, middle domain KUE09_18940 PF02771 Acyl-CoA dehydrogenase, N-terminal domain KUE09_18945 PF13193 AMP-binding enzyme C-terminal domain KUE09_18945 PF00501 AMP-binding enzyme KUE09_18950 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase KUE09_18950 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase KUE09_18965 PF00324 Amino acid permease KUE09_18970 PF00324 Amino acid permease KUE09_18975 PF01042 Endoribonuclease L-PSP KUE09_18980 PF01168 Alanine racemase, N-terminal domain KUE09_18980 PF00842 Alanine racemase, C-terminal domain KUE09_18985 PF01266 FAD dependent oxidoreductase KUE09_18990 PF01037 Lrp/AsnC ligand binding domain KUE09_19000 PF07715 TonB-dependent Receptor Plug Domain KUE09_19000 PF00593 TonB dependent receptor KUE09_19015 PF00849 RNA pseudouridylate synthase KUE09_19060 PF10106 Uncharacterized protein conserved in bacteria (DUF2345) KUE09_19060 PF04717 Type VI secretion system, phage-baseplate injector KUE09_19060 PF13296 Putative type VI secretion system Rhs element Vgr KUE09_19070 PF02801 Beta-ketoacyl synthase, C-terminal domain KUE09_19070 PF00109 Beta-ketoacyl synthase, N-terminal domain KUE09_19110 PF00694 Aconitase C-terminal domain KUE09_19110 PF00330 Aconitase family (aconitate hydratase) KUE09_19115 PF00285 Citrate synthase, C-terminal domain KUE09_19125 PF07729 FCD domain KUE09_19125 PF00392 Bacterial regulatory proteins, gntR family KUE09_19135 PF00155 Aminotransferase class I and II KUE09_19140 PF01565 FAD binding domain KUE09_19140 PF09330 D-lactate dehydrogenase, membrane binding KUE09_19145 PF01070 FMN-dependent dehydrogenase KUE09_19150 PF07729 FCD domain KUE09_19150 PF00392 Bacterial regulatory proteins, gntR family KUE09_19155 PF02652 L-lactate permease KUE09_19160 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I KUE09_19160 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II KUE09_19160 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain KUE09_19160 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III KUE09_19170 PF16363 GDP-mannose 4,6 dehydratase KUE09_19175 PF00342 Phosphoglucose isomerase KUE09_19180 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain KUE09_19180 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain KUE09_19180 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain KUE09_19185 PF00483 Nucleotidyl transferase KUE09_19190 PF02397 Bacterial sugar transferase KUE09_19195 PF00535 Glycosyl transferase family 2 KUE09_19200 PF00534 Glycosyl transferases group 1 KUE09_19205 PF00535 Glycosyl transferase family 2 KUE09_19215 PF01501 Glycosyl transferase family 8 KUE09_19215 PF00535 Glycosyl transferase family 2 KUE09_19225 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain KUE09_19225 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain KUE09_19225 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain KUE09_19230 PF02563 Polysaccharide biosynthesis/export protein KUE09_19230 PF10531 SLBB domain KUE09_19230 PF18412 Outer-membrane lipoprotein Wza C-terminal domain KUE09_19235 PF01451 Low molecular weight phosphotyrosine protein phosphatase KUE09_19240 PF13614 AAA domain KUE09_19240 PF13807 G-rich domain on putative tyrosine kinase KUE09_19240 PF02706 Chain length determinant protein KUE09_19245 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase KUE09_19245 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase KUE09_19250 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase KUE09_19250 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase KUE09_19255 PF03023 Lipid II flippase MurJ KUE09_19260 PF01510 N-acetylmuramoyl-L-alanine amidase KUE09_19265 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain KUE09_19265 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain KUE09_19275 PF04185 Phosphoesterase family KUE09_19275 PF05506 Domain of unknown function (DUF756) KUE09_19280 PF03725 3' exoribonuclease family, domain 2 KUE09_19280 PF01138 3' exoribonuclease family, domain 1 KUE09_19285 PF00487 Fatty acid desaturase KUE09_19290 PF00175 Oxidoreductase NAD-binding domain KUE09_19295 PF00440 Bacterial regulatory proteins, tetR family KUE09_19300 PF00440 Bacterial regulatory proteins, tetR family KUE09_19300 PF08360 QacR-like protein, C-terminal region KUE09_19305 PF01323 DSBA-like thioredoxin domain KUE09_19315 PF13419 Haloacid dehalogenase-like hydrolase KUE09_19320 PF00106 short chain dehydrogenase KUE09_19335 PF00696 Amino acid kinase family KUE09_19335 PF00583 Acetyltransferase (GNAT) family KUE09_19340 PF09084 NMT1/THI5 like KUE09_19345 PF09084 NMT1/THI5 like KUE09_19350 PF00296 Luciferase-like monooxygenase KUE09_19355 PF00528 Binding-protein-dependent transport system inner membrane component KUE09_19360 PF00005 ABC transporter KUE09_19365 PF08362 YcdC-like protein, C-terminal region KUE09_19365 PF00440 Bacterial regulatory proteins, tetR family KUE09_19370 PF01048 Phosphorylase superfamily KUE09_19380 PF06574 FAD synthetase KUE09_19380 PF01687 Riboflavin kinase KUE09_19385 PF06827 Zinc finger found in FPG and IleRS KUE09_19385 PF00133 tRNA synthetases class I (I, L, M and V) KUE09_19385 PF08264 Anticodon-binding domain of tRNA KUE09_19390 PF01252 Signal peptidase (SPase) II KUE09_19395 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase KUE09_19435 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD KUE09_19440 PF07859 alpha/beta hydrolase fold KUE09_19465 PF01025 GrpE KUE09_19470 PF00012 Hsp70 protein KUE09_19490 PF13406 Transglycosylase SLT domain KUE09_19495 PF02222 ATP-grasp domain KUE09_19495 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain KUE09_19500 PF00731 AIR carboxylase KUE09_19510 PF01225 Mur ligase family, catalytic domain KUE09_19510 PF08245 Mur ligase middle domain KUE09_19510 PF02875 Mur ligase family, glutamate ligase domain KUE09_19520 PF01569 PAP2 superfamily KUE09_19525 PF03741 Integral membrane protein TerC family KUE09_19535 PF03738 Glutathionylspermidine synthase preATP-grasp KUE09_19540 PF00355 Rieske [2Fe-2S] domain KUE09_19545 PF01979 Amidohydrolase family KUE09_19550 PF00156 Phosphoribosyl transferase domain KUE09_19560 PF10411 Disulfide bond isomerase protein N-terminus KUE09_19560 PF13098 Thioredoxin-like domain KUE09_19565 PF01545 Cation efflux family KUE09_19565 PF16916 Dimerisation domain of Zinc Transporter KUE09_19570 PF02583 Metal-sensitive transcriptional repressor KUE09_19575 PF10396 GTP-binding protein TrmE N-terminus KUE09_19575 PF12631 MnmE helical domain KUE09_19575 PF01926 50S ribosome-binding GTPase KUE09_19580 PF02096 60Kd inner membrane protein KUE09_19580 PF14849 YidC periplasmic domain KUE09_19585 PF01809 Putative membrane protein insertion efficiency factor KUE09_19590 PF00825 Ribonuclease P KUE09_19595 PF00468 Ribosomal protein L34 KUE09_19635 PF02899 Phage integrase, N-terminal SAM-like domain KUE09_19635 PF00589 Phage integrase family KUE09_19660 PF00665 Integrase core domain KUE09_19675 PF00809 Pterin binding enzyme KUE09_19685 PF07690 Major Facilitator Superfamily KUE09_19690 PF02909 Tetracyclin repressor-like, C-terminal domain KUE09_19690 PF00440 Bacterial regulatory proteins, tetR family KUE09_19710 PF04655 Aminoglycoside/hydroxyurea antibiotic resistance kinase KUE09_19715 PF01636 Phosphotransferase enzyme family KUE09_19730 PF01751 Toprim domain KUE09_19730 PF01396 Topoisomerase DNA binding C4 zinc finger KUE09_19730 PF01131 DNA topoisomerase KUE09_19795 PF13610 DDE domain KUE09_19840 PF13173 AAA domain KUE09_19840 PF13635 Domain of unknown function (DUF4143) KUE09_19850 PF13737 Transposase DDE domain KUE09_19880 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KUE09_19880 PF03466 LysR substrate binding domain KUE09_19890 PF13610 DDE domain KUE09_19910 PF01636 Phosphotransferase enzyme family KUE09_19915 PF13610 DDE domain KUE09_19920 PF02522 Aminoglycoside 3-N-acetyltransferase KUE09_19975 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain KUE09_19975 PF00437 Type II/IV secretion system protein KUE09_20025 PF13614 AAA domain KUE09_20030 PF17762 HTH domain found in ParB protein KUE09_20030 PF02195 ParB-like nuclease domain KUE09_20040 PF13438 Domain of unknown function (DUF4113) KUE09_20040 PF00817 impB/mucB/samB family KUE09_20040 PF11799 impB/mucB/samB family C-terminal domain KUE09_20040 PF11798 IMS family HHH motif KUE09_20045 PF00717 Peptidase S24-like KUE09_20070 PF01551 Peptidase family M23 KUE09_20070 PF04225 Opacity-associated protein A LysM-like domain KUE09_20185 PF13737 Transposase DDE domain KUE09_20255 PF01435 Peptidase family M48