locus-tag class description M1S47_00005 PF00308 Bacterial dnaA protein M1S47_00005 PF08299 Bacterial dnaA protein helix-turn-helix M1S47_00005 PF11638 DnaA N-terminal domain M1S47_00010 PF00712 DNA polymerase III beta subunit, N-terminal domain M1S47_00010 PF02767 DNA polymerase III beta subunit, central domain M1S47_00010 PF02768 DNA polymerase III beta subunit, C-terminal domain M1S47_00015 PF02463 RecF/RecN/SMC N terminal domain M1S47_00020 PF00204 DNA gyrase B M1S47_00020 PF00986 DNA gyrase B subunit, carboxyl terminus M1S47_00020 PF18053 DNA gyrase B subunit insert domain M1S47_00020 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M1S47_00020 PF01751 Toprim domain M1S47_00030 PF09335 SNARE associated Golgi protein M1S47_00035 PF00005 ABC transporter M1S47_00035 PF12848 ABC transporter M1S47_00055 PF01521 Iron-sulphur cluster biosynthesis M1S47_00060 PF00561 alpha/beta hydrolase fold M1S47_00065 PF03702 Anhydro-N-acetylmuramic acid kinase M1S47_00070 PF00579 tRNA synthetases class I (W and Y) M1S47_00110 PF00209 Sodium:neurotransmitter symporter family M1S47_00120 PF01189 16S rRNA methyltransferase RsmB/F M1S47_00120 PF01029 NusB family M1S47_00125 PF02911 Formyl transferase, C-terminal domain M1S47_00125 PF00551 Formyl transferase M1S47_00130 PF00920 Dehydratase family M1S47_00145 PF03466 LysR substrate binding domain M1S47_00145 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M1S47_00150 PF00860 Permease family M1S47_00155 PF00311 Phosphoenolpyruvate carboxylase M1S47_00160 PF08361 MAATS-type transcriptional repressor, C-terminal region M1S47_00160 PF00440 Bacterial regulatory proteins, tetR family M1S47_00165 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion M1S47_00170 PF00873 AcrB/AcrD/AcrF family M1S47_00180 PF00226 DnaJ domain M1S47_00180 PF00684 DnaJ central domain M1S47_00180 PF01556 DnaJ C terminal domain M1S47_00190 PF01113 Dihydrodipicolinate reductase, N-terminus M1S47_00190 PF05173 Dihydrodipicolinate reductase, C-terminus M1S47_00200 PF07690 Major Facilitator Superfamily M1S47_00205 PF00248 Aldo/keto reductase family M1S47_00210 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M1S47_00210 PF03466 LysR substrate binding domain M1S47_00225 PF00392 Bacterial regulatory proteins, gntR family M1S47_00225 PF00155 Aminotransferase class I and II M1S47_00230 PF08240 Alcohol dehydrogenase GroES-like domain M1S47_00230 PF00107 Zinc-binding dehydrogenase M1S47_00235 PF03352 Methyladenine glycosylase M1S47_00250 PF00730 HhH-GPD superfamily base excision DNA repair protein M1S47_00250 PF14815 NUDIX domain M1S47_00250 PF10576 Iron-sulfur binding domain of endonuclease III M1S47_00250 PF00633 Helix-hairpin-helix motif M1S47_00265 PF07043 Protein of unknown function (DUF1328) M1S47_00270 PF03692 Putative zinc- or iron-chelating domain M1S47_00275 PF07995 Glucose / Sorbosone dehydrogenase M1S47_00280 PF00004 ATPase family associated with various cellular activities (AAA) M1S47_00280 PF16193 AAA C-terminal domain M1S47_00280 PF12002 MgsA AAA+ ATPase C terminal M1S47_00285 PF01226 Formate/nitrite transporter M1S47_00295 PF01259 SAICAR synthetase M1S47_00305 PF00701 Dihydrodipicolinate synthetase family M1S47_00310 PF00857 Isochorismatase family M1S47_00315 PF01758 Sodium Bile acid symporter family M1S47_00320 PF01554 MatE M1S47_00325 PF04463 Protein of unknown function (DUF523) M1S47_00330 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily M1S47_00340 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily M1S47_00345 PF02798 Glutathione S-transferase, N-terminal domain M1S47_00345 PF14497 Glutathione S-transferase, C-terminal domain M1S47_00355 PF00324 Amino acid permease M1S47_00365 PF07683 Cobalamin synthesis protein cobW C-terminal domain M1S47_00365 PF02492 CobW/HypB/UreG, nucleotide-binding domain M1S47_00375 PF00392 Bacterial regulatory proteins, gntR family M1S47_00375 PF07702 UTRA domain M1S47_00380 PF05962 HutD M1S47_00385 PF17392 Urocanase C-terminal domain M1S47_00385 PF01175 Urocanase Rossmann-like domain M1S47_00385 PF17391 Urocanase N-terminal domain M1S47_00390 PF00221 Aromatic amino acid lyase M1S47_00395 PF00324 Amino acid permease M1S47_00400 PF01979 Amidohydrolase family M1S47_00405 PF00491 Arginase family M1S47_00420 PF01177 Asp/Glu/Hydantoin racemase M1S47_00425 PF01380 SIS domain M1S47_00430 PF00132 Bacterial transferase hexapeptide (six repeats) M1S47_00430 PF14602 Hexapeptide repeat of succinyl-transferase M1S47_00430 PF12804 MobA-like NTP transferase domain M1S47_00435 PF04608 Phosphatidylglycerophosphatase A M1S47_00440 PF02769 AIR synthase related protein, C-terminal domain M1S47_00440 PF00586 AIR synthase related protein, N-terminal domain M1S47_00445 PF01029 NusB family M1S47_00450 PF00885 6,7-dimethyl-8-ribityllumazine synthase M1S47_00455 PF00925 GTP cyclohydrolase II M1S47_00455 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase M1S47_00480 PF02580 D-Tyr-tRNA(Tyr) deacylase M1S47_00485 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family M1S47_00485 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain M1S47_00490 PF00581 Rhodanese-like domain M1S47_00495 PF02666 Phosphatidylserine decarboxylase M1S47_00500 PF03069 Acetamidase/Formamidase family M1S47_00520 PF00512 His Kinase A (phospho-acceptor) domain M1S47_00520 PF11808 Phosphate regulon sensor protein PhoR M1S47_00520 PF00989 PAS fold M1S47_00520 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M1S47_00525 PF00072 Response regulator receiver domain M1S47_00525 PF00486 Transcriptional regulatory protein, C terminal M1S47_00535 PF00106 short chain dehydrogenase M1S47_00540 PF01554 MatE M1S47_00545 PF00155 Aminotransferase class I and II M1S47_00550 PF04286 Protein of unknown function (DUF445) M1S47_00565 PF04262 Glutamate-cysteine ligase M1S47_00570 PF02600 Disulfide bond formation protein DsbB M1S47_00575 PF04717 Type VI secretion system, phage-baseplate injector M1S47_00575 PF10106 Uncharacterized protein conserved in bacteria (DUF2345) M1S47_00575 PF13296 Putative type VI secretion system Rhs element Vgr M1S47_00580 PF00877 NlpC/P60 family M1S47_00580 PF01476 LysM domain M1S47_00595 PF05728 Uncharacterised protein family (UPF0227) M1S47_00600 PF01751 Toprim domain M1S47_00600 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M1S47_00600 PF00986 DNA gyrase B subunit, carboxyl terminus M1S47_00600 PF00204 DNA gyrase B M1S47_00605 PF00106 short chain dehydrogenase M1S47_00610 PF04115 Ureidoglycolate lyase M1S47_00615 PF03561 Allantoicase repeat M1S47_00620 PF01494 FAD binding domain M1S47_00630 PF00860 Permease family M1S47_00635 PF00576 HIUase/Transthyretin family M1S47_00665 PF11412 Disulphide bond corrector protein DsbC M1S47_00665 PF02683 Cytochrome C biogenesis protein transmembrane region M1S47_00670 PF00990 Diguanylate cyclase, GGDEF domain M1S47_00670 PF07694 5TMR of 5TMR-LYT M1S47_00675 PF07859 alpha/beta hydrolase fold M1S47_00685 PF03960 ArsC family M1S47_00690 PF03372 Endonuclease/Exonuclease/phosphatase family M1S47_00695 PF00156 Phosphoribosyl transferase domain M1S47_00700 PF00593 TonB dependent receptor M1S47_00700 PF07715 TonB-dependent Receptor Plug Domain M1S47_00710 PF02951 Prokaryotic glutathione synthetase, N-terminal domain M1S47_00710 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain M1S47_00715 PF03033 Glycosyltransferase family 28 N-terminal domain M1S47_00715 PF04101 Glycosyltransferase family 28 C-terminal domain M1S47_00720 PF08245 Mur ligase middle domain M1S47_00720 PF02875 Mur ligase family, glutamate ligase domain M1S47_00720 PF01225 Mur ligase family, catalytic domain M1S47_00725 PF07478 D-ala D-ala ligase C-terminus M1S47_00725 PF01820 D-ala D-ala ligase N-terminus M1S47_00730 PF08478 POTRA domain, FtsQ-type M1S47_00730 PF03799 Cell division protein FtsQ M1S47_00735 PF02491 SHS2 domain inserted in FTSA M1S47_00740 PF00091 Tubulin/FtsZ family, GTPase domain M1S47_00740 PF12327 FtsZ family, C-terminal domain M1S47_00745 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase M1S47_00755 PF01551 Peptidase family M23 M1S47_00760 PF17831 Pyruvate dehydrogenase E1 component middle domain M1S47_00760 PF00456 Transketolase, thiamine diphosphate binding domain M1S47_00765 PF02817 e3 binding domain M1S47_00765 PF00364 Biotin-requiring enzyme M1S47_00765 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) M1S47_00775 PF01169 Uncharacterized protein family UPF0016 M1S47_00785 PF00258 Flavodoxin M1S47_00785 PF01613 Flavin reductase like domain M1S47_00790 PF03692 Putative zinc- or iron-chelating domain M1S47_00795 PF00478 IMP dehydrogenase / GMP reductase domain M1S47_00795 PF00571 CBS domain M1S47_00800 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III M1S47_00800 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I M1S47_00800 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain M1S47_00800 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II M1S47_00805 PF01243 Pyridoxamine 5'-phosphate oxidase M1S47_00805 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region M1S47_00810 PF02272 DHHA1 domain M1S47_00810 PF01368 DHH family M1S47_00810 PF17768 RecJ OB domain M1S47_00830 PF00724 NADH:flavin oxidoreductase / NADH oxidase family M1S47_00835 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) M1S47_00840 PF04452 RNA methyltransferase M1S47_00845 PF00924 Mechanosensitive ion channel M1S47_00855 PF13193 AMP-binding enzyme C-terminal domain M1S47_00855 PF00501 AMP-binding enzyme M1S47_00855 PF16177 Acetyl-coenzyme A synthetase N-terminus M1S47_00860 PF00857 Isochorismatase family M1S47_00865 PF01037 Lrp/AsnC ligand binding domain M1S47_00870 PF00872 Transposase, Mutator family M1S47_00875 PF00296 Luciferase-like monooxygenase M1S47_00880 PF03358 NADPH-dependent FMN reductase M1S47_00885 PF00072 Response regulator receiver domain M1S47_00885 PF00196 Bacterial regulatory proteins, luxR family M1S47_00895 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M1S47_00895 PF00672 HAMP domain M1S47_00895 PF00072 Response regulator receiver domain M1S47_00895 PF00512 His Kinase A (phospho-acceptor) domain M1S47_00895 PF01627 Hpt domain M1S47_00900 PF04341 Protein of unknown function, DUF485 M1S47_00905 PF00474 Sodium:solute symporter family M1S47_00915 PF02028 BCCT, betaine/carnitine/choline family transporter M1S47_00925 PF00990 Diguanylate cyclase, GGDEF domain M1S47_00935 PF00005 ABC transporter M1S47_00935 PF17755 UvrA DNA-binding domain M1S47_00935 PF17760 UvrA interaction domain M1S47_00940 PF16925 Tetracyclin repressor-like, C-terminal domain M1S47_00940 PF00440 Bacterial regulatory proteins, tetR family M1S47_00945 PF08240 Alcohol dehydrogenase GroES-like domain M1S47_00945 PF00107 Zinc-binding dehydrogenase M1S47_00955 PF06942 GlpM protein M1S47_00960 PF08543 Phosphomethylpyrimidine kinase M1S47_00960 PF02581 Thiamine monophosphate synthase M1S47_00960 PF03070 TENA/THI-4/PQQC family M1S47_00970 PF07690 Major Facilitator Superfamily M1S47_00975 PF00436 Single-strand binding protein family M1S47_00985 PF03591 AzlC protein M1S47_00995 PF00324 Amino acid permease M1S47_01000 PF00392 Bacterial regulatory proteins, gntR family M1S47_01000 PF00155 Aminotransferase class I and II M1S47_01005 PF00202 Aminotransferase class-III M1S47_01010 PF00171 Aldehyde dehydrogenase family M1S47_01015 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M1S47_01020 PF00857 Isochorismatase family M1S47_01025 PF02678 Pirin M1S47_01025 PF05726 Pirin C-terminal cupin domain M1S47_01030 PF01593 Flavin containing amine oxidoreductase M1S47_01050 PF07690 Major Facilitator Superfamily M1S47_01055 PF03466 LysR substrate binding domain M1S47_01055 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M1S47_01075 PF00248 Aldo/keto reductase family M1S47_01080 PF12833 Helix-turn-helix domain M1S47_01080 PF02311 AraC-like ligand binding domain M1S47_01110 PF01638 HxlR-like helix-turn-helix M1S47_01115 PF02525 Flavodoxin-like fold M1S47_01135 PF02705 K+ potassium transporter M1S47_01160 PF00230 Major intrinsic protein M1S47_01175 PF00977 Histidine biosynthesis protein M1S47_01180 PF01636 Phosphotransferase enzyme family M1S47_01195 PF03992 Antibiotic biosynthesis monooxygenase M1S47_01210 PF00977 Histidine biosynthesis protein M1S47_01225 PF00117 Glutamine amidotransferase class-I M1S47_01230 PF00475 Imidazoleglycerol-phosphate dehydratase M1S47_01250 PF00583 Acetyltransferase (GNAT) family M1S47_01255 PF13336 Acetyl-CoA hydrolase/transferase C-terminal domain M1S47_01255 PF02550 Acetyl-CoA hydrolase/transferase N-terminal domain M1S47_01265 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M1S47_01265 PF00672 HAMP domain M1S47_01265 PF00512 His Kinase A (phospho-acceptor) domain M1S47_01270 PF00486 Transcriptional regulatory protein, C terminal M1S47_01270 PF00072 Response regulator receiver domain M1S47_01275 PF00575 S1 RNA binding domain M1S47_01275 PF09371 Tex-like protein N-terminal domain M1S47_01275 PF16921 Tex protein YqgF-like domain M1S47_01275 PF17674 HHH domain M1S47_01280 PF00916 Sulfate permease family M1S47_01280 PF01740 STAS domain M1S47_01285 PF00106 short chain dehydrogenase M1S47_01290 PF01053 Cys/Met metabolism PLP-dependent enzyme M1S47_01295 PF00005 ABC transporter M1S47_01295 PF12848 ABC transporter M1S47_01320 PF04191 Phospholipid methyltransferase M1S47_01340 PF00529 HlyD membrane-fusion protein of T1SS M1S47_01340 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion M1S47_01345 PF00873 AcrB/AcrD/AcrF family M1S47_01350 PF01545 Cation efflux family M1S47_01375 PF00324 Amino acid permease M1S47_01390 PF00749 tRNA synthetases class I (E and Q), catalytic domain M1S47_01405 PF01795 MraW methylase family M1S47_01415 PF03717 Penicillin-binding Protein dimerisation domain M1S47_01415 PF00905 Penicillin binding protein transpeptidase domain M1S47_01420 PF02875 Mur ligase family, glutamate ligase domain M1S47_01420 PF08245 Mur ligase middle domain M1S47_01420 PF01225 Mur ligase family, catalytic domain M1S47_01425 PF01225 Mur ligase family, catalytic domain M1S47_01425 PF02875 Mur ligase family, glutamate ligase domain M1S47_01425 PF08245 Mur ligase middle domain M1S47_01430 PF00953 Glycosyl transferase family 4 M1S47_01440 PF13847 Methyltransferase domain M1S47_01445 PF17092 Penicillin-binding protein OB-like domain M1S47_01445 PF00912 Transglycosylase M1S47_01445 PF00905 Penicillin binding protein transpeptidase domain M1S47_01450 PF11104 Type IV pilus assembly protein PilM; M1S47_01455 PF05137 Fimbrial assembly protein (PilN) M1S47_01460 PF04350 Pilus assembly protein, PilO M1S47_01470 PF11741 AMIN domain M1S47_01470 PF00263 Bacterial type II and III secretion system protein M1S47_01470 PF07660 Secretin and TonB N terminus short domain M1S47_01470 PF03958 Bacterial type II/III secretion system short domain M1S47_01475 PF01202 Shikimate kinase M1S47_01480 PF01761 3-dehydroquinate synthase M1S47_01490 PF01645 Conserved region in glutamate synthase M1S47_01490 PF01493 GXGXG motif M1S47_01490 PF00310 Glutamine amidotransferases class-II M1S47_01490 PF04898 Glutamate synthase central domain M1S47_01495 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster M1S47_01495 PF07992 Pyridine nucleotide-disulphide oxidoreductase M1S47_01505 PF04011 LemA family M1S47_01510 PF04536 TPM domain M1S47_01520 PF07963 Prokaryotic N-terminal methylation motif M1S47_01520 PF00114 Pilin (bacterial filament) M1S47_01530 PF15864 Protein glycosylation ligase M1S47_01530 PF04932 O-Antigen ligase M1S47_01530 PF11846 Virulence factor membrane-bound polymerase, C-terminal M1S47_01540 PF00210 Ferritin-like domain M1S47_01545 PF04324 BFD-like [2Fe-2S] binding domain M1S47_01550 PF01042 Endoribonuclease L-PSP M1S47_01555 PF04607 Region found in RelA / SpoT proteins M1S47_01555 PF13291 ACT domain M1S47_01555 PF02824 TGS domain M1S47_01565 PF01192 RNA polymerase Rpb6 M1S47_01570 PF00625 Guanylate kinase M1S47_01575 PF02401 LytB protein M1S47_01615 PF00886 Ribosomal protein S16 M1S47_01620 PF01782 RimM N-terminal domain M1S47_01620 PF05239 PRC-barrel domain M1S47_01625 PF01746 tRNA (Guanine-1)-methyltransferase M1S47_01630 PF01245 Ribosomal protein L19 M1S47_01635 PF00561 alpha/beta hydrolase fold M1S47_01640 PF03280 Proteobacterial lipase chaperone protein M1S47_01645 PF09157 Pseudouridine synthase II TruB, C-terminal M1S47_01645 PF01509 TruB family pseudouridylate synthase (N terminal domain) M1S47_01645 PF16198 tRNA pseudouridylate synthase B C-terminal domain M1S47_01650 PF01925 Sulfite exporter TauE/SafE M1S47_01660 PF00892 EamA-like transporter family M1S47_01665 PF00892 EamA-like transporter family M1S47_01670 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain M1S47_01670 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain M1S47_01675 PF02913 FAD linked oxidases, C-terminal domain M1S47_01675 PF01565 FAD binding domain M1S47_01685 PF03992 Antibiotic biosynthesis monooxygenase M1S47_01690 PF02525 Flavodoxin-like fold M1S47_01700 PF07690 Major Facilitator Superfamily M1S47_01705 PF12805 FUSC-like inner membrane protein yccS M1S47_01710 PF00080 Copper/zinc superoxide dismutase (SODC) M1S47_01715 PF01594 AI-2E family transporter M1S47_01720 PF13614 AAA domain M1S47_01750 PF00324 Amino acid permease M1S47_01755 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase M1S47_01755 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain M1S47_01760 PF00202 Aminotransferase class-III M1S47_01765 PF04958 Arginine N-succinyltransferase beta subunit M1S47_01770 PF00171 Aldehyde dehydrogenase family M1S47_01775 PF04996 Succinylarginine dihydrolase M1S47_01780 PF04952 Succinylglutamate desuccinylase / Aspartoacylase family M1S47_01795 PF05922 Peptidase inhibitor I9 M1S47_01795 PF00082 Subtilase family M1S47_01810 PF03466 LysR substrate binding domain M1S47_01810 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M1S47_01815 PF00892 EamA-like transporter family M1S47_01825 PF05746 DALR anticodon binding domain M1S47_01825 PF02092 Glycyl-tRNA synthetase beta subunit M1S47_01830 PF02091 Glycyl-tRNA synthetase alpha subunit M1S47_01855 PF00571 CBS domain M1S47_01860 PF04024 PspC domain M1S47_01870 PF00441 Acyl-CoA dehydrogenase, C-terminal domain M1S47_01870 PF12806 Acetyl-CoA dehydrogenase C-terminal like M1S47_01870 PF02770 Acyl-CoA dehydrogenase, middle domain M1S47_01870 PF02771 Acyl-CoA dehydrogenase, N-terminal domain M1S47_01880 PF18317 Shikimate 5'-dehydrogenase C-terminal domain M1S47_01880 PF01488 Shikimate / quinate 5-dehydrogenase M1S47_01880 PF08501 Shikimate dehydrogenase substrate binding domain M1S47_01885 PF01218 Coproporphyrinogen III oxidase M1S47_01890 PF00925 GTP cyclohydrolase II M1S47_01895 PF13292 1-deoxy-D-xylulose-5-phosphate synthase M1S47_01895 PF02779 Transketolase, pyrimidine binding domain M1S47_01895 PF02780 Transketolase, C-terminal domain M1S47_01900 PF00459 Inositol monophosphatase family M1S47_01905 PF03880 DbpA RNA binding domain M1S47_01905 PF00270 DEAD/DEAH box helicase M1S47_01905 PF12343 Cold shock protein DEAD box A M1S47_01905 PF00271 Helicase conserved C-terminal domain M1S47_01915 PF00005 ABC transporter M1S47_01920 PF02405 Permease MlaE M1S47_01930 PF05494 MlaC protein M1S47_01940 PF01544 CorA-like Mg2+ transporter protein M1S47_01945 PF03641 Possible lysine decarboxylase M1S47_01950 PF00293 NUDIX domain M1S47_01955 PF00156 Phosphoribosyl transferase domain M1S47_01960 PF00270 DEAD/DEAH box helicase M1S47_01960 PF00271 Helicase conserved C-terminal domain M1S47_01960 PF17191 RecG wedge domain M1S47_01975 PF01553 Acyltransferase M1S47_01985 PF00375 Sodium:dicarboxylate symporter family M1S47_01995 PF01926 50S ribosome-binding GTPase M1S47_02000 PF02082 Transcriptional regulator M1S47_02005 PF00042 Globin M1S47_02005 PF00970 Oxidoreductase FAD-binding domain M1S47_02005 PF00175 Oxidoreductase NAD-binding domain M1S47_02010 PF05872 Bacterial protein of unknown function (DUF853) M1S47_02015 PF01053 Cys/Met metabolism PLP-dependent enzyme M1S47_02020 PF00117 Glutamine amidotransferase class-I M1S47_02025 PF00338 Ribosomal protein S10p/S20e M1S47_02030 PF00297 Ribosomal protein L3 M1S47_02035 PF00573 Ribosomal protein L4/L1 family M1S47_02040 PF00276 Ribosomal protein L23 M1S47_02045 PF00181 Ribosomal Proteins L2, RNA binding domain M1S47_02045 PF03947 Ribosomal Proteins L2, C-terminal domain M1S47_02050 PF00203 Ribosomal protein S19 M1S47_02055 PF00237 Ribosomal protein L22p/L17e M1S47_02065 PF00252 Ribosomal protein L16p/L10e M1S47_02070 PF00831 Ribosomal L29 protein M1S47_02075 PF00366 Ribosomal protein S17 M1S47_02080 PF00238 Ribosomal protein L14p/L23e M1S47_02085 PF00467 KOW motif M1S47_02085 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 M1S47_02090 PF00673 ribosomal L5P family C-terminus M1S47_02090 PF00281 Ribosomal protein L5 M1S47_02095 PF00253 Ribosomal protein S14p/S29e M1S47_02100 PF00410 Ribosomal protein S8 M1S47_02105 PF00347 Ribosomal protein L6 M1S47_02110 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast M1S47_02115 PF03719 Ribosomal protein S5, C-terminal domain M1S47_02115 PF00333 Ribosomal protein S5, N-terminal domain M1S47_02120 PF00327 Ribosomal protein L30p/L7e M1S47_02125 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A M1S47_02130 PF00344 SecY translocase M1S47_02135 PF00444 Ribosomal protein L36 M1S47_02140 PF00416 Ribosomal protein S13/S18 M1S47_02145 PF00411 Ribosomal protein S11 M1S47_02150 PF00163 Ribosomal protein S4/S9 N-terminal domain M1S47_02150 PF01479 S4 domain M1S47_02155 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain M1S47_02155 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain M1S47_02155 PF01000 RNA polymerase Rpb3/RpoA insert domain M1S47_02160 PF01196 Ribosomal protein L17 M1S47_02165 PF00743 Flavin-binding monooxygenase-like M1S47_02170 PF02771 Acyl-CoA dehydrogenase, N-terminal domain M1S47_02170 PF00441 Acyl-CoA dehydrogenase, C-terminal domain M1S47_02170 PF02770 Acyl-CoA dehydrogenase, middle domain M1S47_02175 PF03937 Flavinator of succinate dehydrogenase M1S47_02205 PF09526 Probable metal-binding protein (DUF2387) M1S47_02210 PF01432 Peptidase family M3 M1S47_02215 PF17876 Cold shock domain M1S47_02215 PF00575 S1 RNA binding domain M1S47_02215 PF08461 Ribonuclease R winged-helix domain M1S47_02215 PF08206 Ribonuclease B OB domain M1S47_02215 PF00773 RNB domain M1S47_02255 PF01557 Fumarylacetoacetate (FAA) hydrolase family M1S47_02260 PF12833 Helix-turn-helix domain M1S47_02265 PF00892 EamA-like transporter family M1S47_02270 PF03631 Virulence factor BrkB M1S47_02275 PF03358 NADPH-dependent FMN reductase M1S47_02300 PF02130 Uncharacterized protein family UPF0054 M1S47_02305 PF02562 PhoH-like protein M1S47_02310 PF04055 Radical SAM superfamily M1S47_02310 PF01938 TRAM domain M1S47_02310 PF00919 Uncharacterized protein family UPF0004 M1S47_02315 PF10145 Phage-related minor tail protein M1S47_02315 PF01464 Transglycosylase SLT domain M1S47_02315 PF01551 Peptidase family M23 M1S47_02325 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain M1S47_02325 PF00056 lactate/malate dehydrogenase, NAD binding domain M1S47_02345 PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ M1S47_02350 PF01066 CDP-alcohol phosphatidyltransferase M1S47_02395 PF00441 Acyl-CoA dehydrogenase, C-terminal domain M1S47_02395 PF02770 Acyl-CoA dehydrogenase, middle domain M1S47_02395 PF02771 Acyl-CoA dehydrogenase, N-terminal domain M1S47_02400 PF17932 Tetracyclin repressor-like, C-terminal domain M1S47_02400 PF00440 Bacterial regulatory proteins, tetR family M1S47_02415 PF01039 Carboxyl transferase domain M1S47_02420 PF02771 Acyl-CoA dehydrogenase, N-terminal domain M1S47_02420 PF02770 Acyl-CoA dehydrogenase, middle domain M1S47_02420 PF00441 Acyl-CoA dehydrogenase, C-terminal domain M1S47_02430 PF02785 Biotin carboxylase C-terminal domain M1S47_02430 PF00289 Biotin carboxylase, N-terminal domain M1S47_02430 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain M1S47_02430 PF00364 Biotin-requiring enzyme M1S47_02440 PF04386 Stringent starvation protein B M1S47_02445 PF00043 Glutathione S-transferase, C-terminal domain M1S47_02445 PF13417 Glutathione S-transferase, N-terminal domain M1S47_02450 PF00380 Ribosomal protein S9/S16 M1S47_02455 PF00572 Ribosomal protein L13 M1S47_02460 PF04166 Pyridoxal phosphate biosynthetic protein PdxA M1S47_02465 PF00398 Ribosomal RNA adenine dimethylase M1S47_02470 PF00149 Calcineurin-like phosphoesterase M1S47_02490 PF13167 GTP-binding GTPase N-terminal M1S47_02490 PF01926 50S ribosome-binding GTPase M1S47_02490 PF16360 GTP-binding GTPase Middle Region M1S47_02500 PF13091 PLD-like domain M1S47_02505 PF10518 TAT (twin-arginine translocation) pathway signal sequence M1S47_02505 PF00149 Calcineurin-like phosphoesterase M1S47_02510 PF01389 OmpA-like transmembrane domain M1S47_02510 PF00691 OmpA family M1S47_02515 PF00990 Diguanylate cyclase, GGDEF domain M1S47_02515 PF17152 Periplasmic sensor domain M1S47_02550 PF07992 Pyridine nucleotide-disulphide oxidoreductase M1S47_02550 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain M1S47_02560 PF04273 Putative phosphatase (DUF442) M1S47_02560 PF00753 Metallo-beta-lactamase superfamily M1S47_02565 PF00561 alpha/beta hydrolase fold M1S47_02570 PF00085 Thioredoxin M1S47_02575 PF03061 Thioesterase superfamily M1S47_02585 PF04461 Protein of unknown function (DUF520) M1S47_02595 PF01266 FAD dependent oxidoreductase M1S47_02595 PF05430 S-adenosyl-L-methionine-dependent methyltransferase M1S47_02605 PF03795 YCII-related domain M1S47_02610 PF04279 Intracellular septation protein A M1S47_02615 PF02811 PHP domain M1S47_02620 PF01062 Bestrophin, RFP-TM, chloride channel M1S47_02625 PF04002 RadC-like JAB domain M1S47_02630 PF04127 DNA / pantothenate metabolism flavoprotein M1S47_02630 PF02441 Flavoprotein M1S47_02635 PF07549 SecD/SecF GG Motif M1S47_02635 PF02355 Protein export membrane protein M1S47_02640 PF07549 SecD/SecF GG Motif M1S47_02640 PF13721 SecD export protein N-terminal TM region M1S47_02640 PF02355 Protein export membrane protein M1S47_02645 PF02699 Preprotein translocase subunit M1S47_02650 PF01702 Queuine tRNA-ribosyltransferase M1S47_02665 PF02547 Queuosine biosynthesis protein M1S47_02675 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M1S47_02675 PF07689 KaiB domain M1S47_02675 PF00512 His Kinase A (phospho-acceptor) domain M1S47_02680 PF03710 Glutamate-ammonia ligase adenylyltransferase M1S47_02680 PF08335 GlnD PII-uridylyltransferase M1S47_02685 PF01063 Amino-transferase class IV M1S47_02700 PF01522 Polysaccharide deacetylase M1S47_02705 PF00535 Glycosyl transferase family 2 M1S47_02710 PF13439 Glycosyltransferase Family 4 M1S47_02710 PF00534 Glycosyl transferases group 1 M1S47_02735 PF17101 Stealth protein CR1, conserved region 1 M1S47_02735 PF17102 Stealth protein CR3, conserved region 3 M1S47_02735 PF11380 Stealth protein CR2, conserved region 2 M1S47_02740 PF02938 GAD domain M1S47_02740 PF00152 tRNA synthetases class II (D, K and N) M1S47_02740 PF01336 OB-fold nucleic acid binding domain M1S47_02750 PF07715 TonB-dependent Receptor Plug Domain M1S47_02750 PF00593 TonB dependent receptor M1S47_02770 PF06146 Phosphate-starvation-inducible E M1S47_02775 PF02798 Glutathione S-transferase, N-terminal domain M1S47_02775 PF00043 Glutathione S-transferase, C-terminal domain M1S47_02780 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M1S47_02780 PF03466 LysR substrate binding domain M1S47_02785 PF00441 Acyl-CoA dehydrogenase, C-terminal domain M1S47_02785 PF02771 Acyl-CoA dehydrogenase, N-terminal domain M1S47_02785 PF02770 Acyl-CoA dehydrogenase, middle domain M1S47_02785 PF12806 Acetyl-CoA dehydrogenase C-terminal like M1S47_02790 PF02771 Acyl-CoA dehydrogenase, N-terminal domain M1S47_02790 PF02770 Acyl-CoA dehydrogenase, middle domain M1S47_02790 PF00441 Acyl-CoA dehydrogenase, C-terminal domain M1S47_02790 PF12806 Acetyl-CoA dehydrogenase C-terminal like M1S47_02800 PF00672 HAMP domain M1S47_02800 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M1S47_02800 PF00512 His Kinase A (phospho-acceptor) domain M1S47_02805 PF00072 Response regulator receiver domain M1S47_02805 PF00486 Transcriptional regulatory protein, C terminal M1S47_02810 PF02696 Uncharacterized ACR, YdiU/UPF0061 family M1S47_02830 PF01923 Cobalamin adenosyltransferase M1S47_02835 PF00593 TonB dependent receptor M1S47_02835 PF07715 TonB-dependent Receptor Plug Domain M1S47_02840 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase M1S47_02845 PF00291 Pyridoxal-phosphate dependent enzyme M1S47_02870 PF00290 Tryptophan synthase alpha chain M1S47_02875 PF01039 Carboxyl transferase domain M1S47_02880 PF08245 Mur ligase middle domain M1S47_02880 PF02875 Mur ligase family, glutamate ligase domain M1S47_02895 PF00753 Metallo-beta-lactamase superfamily M1S47_02900 PF00578 AhpC/TSA family M1S47_02900 PF10417 C-terminal domain of 1-Cys peroxiredoxin M1S47_02905 PF07516 SecA Wing and Scaffold domain M1S47_02905 PF02810 SEC-C motif M1S47_02905 PF07517 SecA DEAD-like domain M1S47_02905 PF01043 SecA preprotein cross-linking domain M1S47_02915 PF07690 Major Facilitator Superfamily M1S47_02915 PF00083 Sugar (and other) transporter M1S47_02920 PF03006 Haemolysin-III related M1S47_02945 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain M1S47_02945 PF00378 Enoyl-CoA hydratase/isomerase M1S47_02945 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain M1S47_02950 PF02803 Thiolase, C-terminal domain M1S47_02950 PF00108 Thiolase, N-terminal domain M1S47_02955 PF02311 AraC-like ligand binding domain M1S47_02955 PF12833 Helix-turn-helix domain M1S47_02960 PF02515 CoA-transferase family III M1S47_02965 PF04966 Carbohydrate-selective porin, OprB family M1S47_02970 PF01011 PQQ enzyme repeat M1S47_02975 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain M1S47_02975 PF01077 Nitrite and sulphite reductase 4Fe-4S domain M1S47_02985 PF00893 Small Multidrug Resistance protein M1S47_02995 PF00108 Thiolase, N-terminal domain M1S47_02995 PF02803 Thiolase, C-terminal domain M1S47_03005 PF13505 Outer membrane protein beta-barrel domain M1S47_03005 PF00691 OmpA family M1S47_03015 PF01139 tRNA-splicing ligase RtcB M1S47_03020 PF00324 Amino acid permease M1S47_03025 PF08468 Methyltransferase small domain N-terminal M1S47_03025 PF05175 Methyltransferase small domain M1S47_03030 PF00860 Permease family M1S47_03035 PF00679 Elongation factor G C-terminus M1S47_03035 PF03144 Elongation factor Tu domain 2 M1S47_03035 PF00009 Elongation factor Tu GTP binding domain M1S47_03040 PF01741 Large-conductance mechanosensitive channel, MscL M1S47_03055 PF06827 Zinc finger found in FPG and IleRS M1S47_03055 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain M1S47_03055 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain M1S47_03060 PF02245 Methylpurine-DNA glycosylase (MPG) M1S47_03080 PF00724 NADH:flavin oxidoreductase / NADH oxidase family M1S47_03095 PF10411 Disulfide bond isomerase protein N-terminus M1S47_03095 PF13098 Thioredoxin-like domain M1S47_03100 PF01571 Aminomethyltransferase folate-binding domain M1S47_03110 PF04343 Protein of unknown function, DUF488 M1S47_03115 PF03831 PhnA domain M1S47_03115 PF08274 PhnA Zinc-Ribbon M1S47_03120 PF07411 Domain of unknown function (DUF1508) M1S47_03125 PF03129 Anticodon binding domain M1S47_03125 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) M1S47_03125 PF04073 Aminoacyl-tRNA editing domain M1S47_03130 PF00873 AcrB/AcrD/AcrF family M1S47_03145 PF00072 Response regulator receiver domain M1S47_03150 PF00072 Response regulator receiver domain M1S47_03155 PF01584 CheW-like domain M1S47_03160 PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term M1S47_03160 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain M1S47_03165 PF00072 Response regulator receiver domain M1S47_03165 PF01627 Hpt domain M1S47_03165 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M1S47_03165 PF01584 CheW-like domain M1S47_03175 PF01546 Peptidase family M20/M25/M40 M1S47_03175 PF07687 Peptidase dimerisation domain M1S47_03180 PF08085 Entericidin EcnA/B family M1S47_03190 PF04304 Protein of unknown function (DUF454) M1S47_03195 PF17969 L,D-transpeptidase C-terminal domain M1S47_03195 PF03734 L,D-transpeptidase catalytic domain M1S47_03235 PF00258 Flavodoxin M1S47_03235 PF00175 Oxidoreductase NAD-binding domain M1S47_03235 PF00667 FAD binding domain M1S47_03245 PF12805 FUSC-like inner membrane protein yccS M1S47_03250 PF07690 Major Facilitator Superfamily M1S47_03255 PF00881 Nitroreductase family M1S47_03270 PF01235 Sodium:alanine symporter family M1S47_03275 PF01734 Patatin-like phospholipase M1S47_03280 PF13291 ACT domain M1S47_03280 PF00291 Pyridoxal-phosphate dependent enzyme M1S47_03285 PF05992 SbmA/BacA-like family M1S47_03315 PF02934 GatB/GatE catalytic domain M1S47_03315 PF02637 GatB domain M1S47_03320 PF01425 Amidase M1S47_03325 PF02686 Glu-tRNAGln amidotransferase C subunit M1S47_03335 PF04085 rod shape-determining protein MreC M1S47_03340 PF04093 rod shape-determining protein MreD M1S47_03345 PF02545 Maf-like protein M1S47_03350 PF00575 S1 RNA binding domain M1S47_03350 PF10150 Ribonuclease E/G family M1S47_03360 PF06974 Protein of unknown function (DUF1298) M1S47_03360 PF03007 Wax ester synthase-like Acyl-CoA acyltransferase domain M1S47_03365 PF01507 Phosphoadenosine phosphosulfate reductase family M1S47_03380 PF02525 Flavodoxin-like fold M1S47_03400 PF02673 Bacitracin resistance protein BacA M1S47_03405 PF12833 Helix-turn-helix domain M1S47_03405 PF06719 AraC-type transcriptional regulator N-terminus M1S47_03410 PF09277 Erythronolide synthase, docking M1S47_03410 PF00698 Acyl transferase domain M1S47_03410 PF08240 Alcohol dehydrogenase GroES-like domain M1S47_03410 PF14765 Polyketide synthase dehydratase M1S47_03410 PF08990 Erythronolide synthase docking M1S47_03410 PF08659 KR domain M1S47_03410 PF02801 Beta-ketoacyl synthase, C-terminal domain M1S47_03410 PF00109 Beta-ketoacyl synthase, N-terminal domain M1S47_03410 PF16197 Ketoacyl-synthetase C-terminal extension M1S47_03410 PF00550 Phosphopantetheine attachment site M1S47_03415 PF01965 DJ-1/PfpI family M1S47_03425 PF00324 Amino acid permease M1S47_03430 PF04303 PrpF protein M1S47_03435 PF00348 Polyprenyl synthetase M1S47_03440 PF04237 YjbR M1S47_03445 PF01145 SPFH domain / Band 7 family M1S47_03455 PF01734 Patatin-like phospholipase M1S47_03475 PF08019 Phosphoethanolamine transferase EptA/EptB M1S47_03475 PF00884 Sulfatase M1S47_03480 PF00072 Response regulator receiver domain M1S47_03480 PF00486 Transcriptional regulatory protein, C terminal M1S47_03485 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M1S47_03485 PF00512 His Kinase A (phospho-acceptor) domain M1S47_03485 PF08521 Two-component sensor kinase N-terminal M1S47_03495 PF00909 Ammonium Transporter Family M1S47_03500 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M1S47_03500 PF03466 LysR substrate binding domain M1S47_03520 PF10458 Valyl tRNA synthetase tRNA binding arm M1S47_03520 PF00133 tRNA synthetases class I (I, L, M and V) M1S47_03520 PF08264 Anticodon-binding domain of tRNA M1S47_03540 PF01906 Putative heavy-metal-binding M1S47_03545 PF01906 Putative heavy-metal-binding M1S47_03550 PF02321 Outer membrane efflux protein M1S47_03555 PF00873 AcrB/AcrD/AcrF family M1S47_03560 PF00529 HlyD membrane-fusion protein of T1SS M1S47_03560 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion M1S47_03565 PF01569 PAP2 superfamily M1S47_03575 PF00348 Polyprenyl synthetase M1S47_03585 PF00829 Ribosomal prokaryotic L21 protein M1S47_03590 PF01016 Ribosomal L27 protein M1S47_03595 PF03548 Outer membrane lipoprotein carrier protein LolA M1S47_03605 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) M1S47_03605 PF02403 Seryl-tRNA synthetase N-terminal domain M1S47_03610 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases M1S47_03610 PF10414 Sirohaem synthase dimerisation region M1S47_03610 PF14824 Sirohaem biosynthesis protein central M1S47_03615 PF00588 SpoU rRNA Methylase family M1S47_03620 PF01638 HxlR-like helix-turn-helix M1S47_03625 PF03358 NADPH-dependent FMN reductase M1S47_03630 PF13520 Amino acid permease M1S47_03635 PF00465 Iron-containing alcohol dehydrogenase M1S47_03645 PF03099 Biotin/lipoate A/B protein ligase family M1S47_03650 PF04359 Protein of unknown function (DUF493) M1S47_03655 PF03979 Sigma-70 factor, region 1.1 M1S47_03655 PF04545 Sigma-70, region 4 M1S47_03655 PF04539 Sigma-70 region 3 M1S47_03655 PF04542 Sigma-70 region 2 M1S47_03655 PF00140 Sigma-70 factor, region 1.2 M1S47_03655 PF04546 Sigma-70, non-essential region M1S47_03675 PF17773 UPF0176 acylphosphatase like domain M1S47_03675 PF00581 Rhodanese-like domain M1S47_03685 PF00285 Citrate synthase, C-terminal domain M1S47_03690 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit M1S47_03695 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit M1S47_03700 PF00890 FAD binding domain M1S47_03700 PF02910 Fumarate reductase flavoprotein C-term M1S47_03705 PF13085 2Fe-2S iron-sulfur cluster binding domain M1S47_03720 PF16078 2-oxoglutarate dehydrogenase N-terminus M1S47_03720 PF00676 Dehydrogenase E1 component M1S47_03720 PF16870 2-oxoglutarate dehydrogenase C-terminal M1S47_03720 PF02779 Transketolase, pyrimidine binding domain M1S47_03725 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) M1S47_03725 PF00364 Biotin-requiring enzyme M1S47_03725 PF02817 e3 binding domain M1S47_03730 PF07992 Pyridine nucleotide-disulphide oxidoreductase M1S47_03730 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain M1S47_03735 PF00549 CoA-ligase M1S47_03735 PF08442 ATP-grasp domain M1S47_03740 PF00549 CoA-ligase M1S47_03740 PF02629 CoA binding domain M1S47_03745 PF00579 tRNA synthetases class I (W and Y) M1S47_03750 PF05661 Protein of unknown function (DUF808) M1S47_03755 PF04228 Putative neutral zinc metallopeptidase M1S47_03760 PF00999 Sodium/hydrogen exchanger family M1S47_03775 PF09587 Bacterial capsule synthesis protein PGA_cap M1S47_03785 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain M1S47_03790 PF00582 Universal stress protein family M1S47_03795 PF00132 Bacterial transferase hexapeptide (six repeats) M1S47_03800 PF03449 Transcription elongation factor, N-terminal M1S47_03800 PF01272 Transcription elongation factor, GreA/GreB, C-term M1S47_03805 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain M1S47_03805 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain M1S47_03805 PF02142 MGS-like domain M1S47_03810 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain M1S47_03810 PF00117 Glutamine amidotransferase class-I M1S47_03825 PF01985 CRS1 / YhbY (CRM) domain M1S47_03830 PF01728 FtsJ-like methyltransferase M1S47_03835 PF01434 Peptidase family M41 M1S47_03835 PF00004 ATPase family associated with various cellular activities (AAA) M1S47_03835 PF06480 FtsH Extracellular M1S47_03835 PF17862 AAA+ lid domain M1S47_03840 PF00809 Pterin binding enzyme M1S47_03860 PF16655 PhoD-like phosphatase, N-terminal domain M1S47_03860 PF09423 PhoD-like phosphatase M1S47_03875 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain M1S47_03875 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain M1S47_03890 PF00083 Sugar (and other) transporter M1S47_03895 PF02782 FGGY family of carbohydrate kinases, C-terminal domain M1S47_03895 PF00370 FGGY family of carbohydrate kinases, N-terminal domain M1S47_03900 PF01266 FAD dependent oxidoreductase M1S47_03900 PF16901 C-terminal domain of alpha-glycerophosphate oxidase M1S47_03905 PF00821 Phosphoenolpyruvate carboxykinase C-terminal P-loop domain M1S47_03905 PF17297 Phosphoenolpyruvate carboxykinase N-terminal domain M1S47_03910 PF00781 Diacylglycerol kinase catalytic domain M1S47_03915 PF00149 Calcineurin-like phosphoesterase M1S47_03925 PF00166 Chaperonin 10 Kd subunit M1S47_03930 PF00118 TCP-1/cpn60 chaperonin family M1S47_03935 PF01219 Prokaryotic diacylglycerol kinase M1S47_03945 PF03009 Glycerophosphoryl diester phosphodiesterase family M1S47_03960 PF01435 Peptidase family M48 M1S47_03965 PF01464 Transglycosylase SLT domain M1S47_03970 PF01171 PP-loop family M1S47_03980 PF00497 Bacterial extracellular solute-binding proteins, family 3 M1S47_03980 PF01464 Transglycosylase SLT domain M1S47_03985 PF03449 Transcription elongation factor, N-terminal M1S47_03985 PF01272 Transcription elongation factor, GreA/GreB, C-term M1S47_04000 PF00501 AMP-binding enzyme M1S47_04000 PF13193 AMP-binding enzyme C-terminal domain M1S47_04000 PF00668 Condensation domain M1S47_04000 PF00550 Phosphopantetheine attachment site M1S47_04000 PF00975 Thioesterase domain M1S47_04030 PF00881 Nitroreductase family M1S47_04045 PF02595 Glycerate kinase family M1S47_04050 PF00384 Molybdopterin oxidoreductase M1S47_04055 PF02634 FdhD/NarQ family M1S47_04065 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain M1S47_04065 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain M1S47_04065 PF11890 Domain of unknown function (DUF3410) M1S47_04070 PF00152 tRNA synthetases class II (D, K and N) M1S47_04080 PF18073 Rubredoxin metal binding domain M1S47_04085 PF00324 Amino acid permease M1S47_04095 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain M1S47_04095 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain M1S47_04100 PF01678 Diaminopimelate epimerase M1S47_04105 PF01810 LysE type translocator M1S47_04110 PF00589 Phage integrase family M1S47_04110 PF02899 Phage integrase, N-terminal SAM-like domain M1S47_04115 PF01012 Electron transfer flavoprotein domain M1S47_04120 PF01012 Electron transfer flavoprotein domain M1S47_04120 PF00766 Electron transfer flavoprotein FAD-binding domain M1S47_04125 PF00521 DNA gyrase/topoisomerase IV, subunit A M1S47_04125 PF03989 DNA gyrase C-terminal domain, beta-propeller M1S47_04140 PF00535 Glycosyl transferase family 2 M1S47_04160 PF13533 Biotin-lipoyl like M1S47_04170 PF00266 Aminotransferase class-V M1S47_04185 PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 M1S47_04195 PF02687 FtsX-like permease family M1S47_04195 PF12704 MacB-like periplasmic core domain M1S47_04200 PF00005 ABC transporter M1S47_04205 PF00753 Metallo-beta-lactamase superfamily M1S47_04205 PF13567 Domain of unknown function (DUF4131) M1S47_04205 PF03772 Competence protein M1S47_04215 PF01343 Peptidase family S49 M1S47_04215 PF06965 Na+/H+ antiporter 1 M1S47_04220 PF12697 Alpha/beta hydrolase family M1S47_04225 PF00551 Formyl transferase M1S47_04230 PF00586 AIR synthase related protein, N-terminal domain M1S47_04230 PF02769 AIR synthase related protein, C-terminal domain M1S47_04235 PF01594 AI-2E family transporter M1S47_04240 PF11638 DnaA N-terminal domain M1S47_04240 PF08299 Bacterial dnaA protein helix-turn-helix M1S47_04240 PF00308 Bacterial dnaA protein M1S47_04270 PF08032 RNA 2'-O ribose methyltransferase substrate binding M1S47_04270 PF00588 SpoU rRNA Methylase family M1S47_04275 PF00316 Fructose-1-6-bisphosphatase, N-terminal domain M1S47_04285 PF00691 OmpA family M1S47_04290 PF04052 TolB amino-terminal domain M1S47_04290 PF07676 WD40-like Beta Propeller Repeat M1S47_04300 PF02472 Biopolymer transport protein ExbD/TolR M1S47_04305 PF01618 MotA/TolQ/ExbB proton channel family M1S47_04310 PF03061 Thioesterase superfamily M1S47_04315 PF07687 Peptidase dimerisation domain M1S47_04315 PF01546 Peptidase family M20/M25/M40 M1S47_04320 PF05496 Holliday junction DNA helicase RuvB P-loop domain M1S47_04320 PF17864 RuvB AAA lid domain M1S47_04320 PF05491 RuvB C-terminal winged helix domain M1S47_04325 PF07499 RuvA, C-terminal domain M1S47_04325 PF01330 RuvA N terminal domain M1S47_04330 PF01966 HD domain M1S47_04335 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain M1S47_04335 PF18076 Formylglycinamide ribonucleotide amidotransferase N-terminal M1S47_04335 PF02769 AIR synthase related protein, C-terminal domain M1S47_04340 PF07690 Major Facilitator Superfamily M1S47_04345 PF01784 NIF3 (NGG1p interacting factor 3) M1S47_04350 PF00378 Enoyl-CoA hydratase/isomerase M1S47_04355 PF01467 Cytidylyltransferase-like M1S47_04355 PF00293 NUDIX domain M1S47_04365 PF00578 AhpC/TSA family M1S47_04380 PF06508 Queuosine biosynthesis protein QueC M1S47_04390 PF14602 Hexapeptide repeat of succinyl-transferase M1S47_04390 PF00132 Bacterial transferase hexapeptide (six repeats) M1S47_04390 PF14805 Tetrahydrodipicolinate N-succinyltransferase N-terminal M1S47_04400 PF03466 LysR substrate binding domain M1S47_04400 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M1S47_04405 PF12857 TOBE-like domain M1S47_04405 PF00005 ABC transporter M1S47_04410 PF00528 Binding-protein-dependent transport system inner membrane component M1S47_04415 PF00528 Binding-protein-dependent transport system inner membrane component M1S47_04430 PF01063 Amino-transferase class IV M1S47_04435 PF02618 YceG-like family M1S47_04440 PF02223 Thymidylate kinase M1S47_04450 PF02910 Fumarate reductase flavoprotein C-term M1S47_04450 PF00890 FAD binding domain M1S47_04455 PF13180 PDZ domain M1S47_04465 PF03144 Elongation factor Tu domain 2 M1S47_04465 PF06421 GTP-binding protein LepA C-terminus M1S47_04465 PF00679 Elongation factor G C-terminus M1S47_04465 PF00009 Elongation factor Tu GTP binding domain M1S47_04470 PF10502 Signal peptidase, peptidase S26 M1S47_04480 PF00035 Double-stranded RNA binding motif M1S47_04480 PF14622 Ribonuclease-III-like M1S47_04485 PF07650 KH domain M1S47_04485 PF01926 50S ribosome-binding GTPase M1S47_04495 PF02565 Recombination protein O C terminal M1S47_04495 PF11967 Recombination protein O N terminal M1S47_04500 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ M1S47_04505 PF06175 tRNA-(MS[2]IO[6]A)-hydroxylase (MiaE) M1S47_04510 PF00106 short chain dehydrogenase M1S47_04540 PF00155 Aminotransferase class I and II M1S47_04550 PF17151 Periplasmic sensor domain M1S47_04550 PF00990 Diguanylate cyclase, GGDEF domain M1S47_04560 PF02151 UvrB/uvrC motif M1S47_04560 PF12344 Ultra-violet resistance protein B M1S47_04560 PF17757 UvrB interaction domain M1S47_04560 PF04851 Type III restriction enzyme, res subunit M1S47_04560 PF00271 Helicase conserved C-terminal domain M1S47_04570 PF00892 EamA-like transporter family M1S47_04575 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain M1S47_04575 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain M1S47_04590 PF01926 50S ribosome-binding GTPase M1S47_04590 PF01018 GTP1/OBG M1S47_04595 PF01472 PUA domain M1S47_04595 PF00696 Amino acid kinase family M1S47_04605 PF07759 Protein of unknown function (DUF1615) M1S47_04610 PF01207 Dihydrouridine synthase (Dus) M1S47_04615 PF03060 Nitronate monooxygenase M1S47_04630 PF02350 UDP-N-acetylglucosamine 2-epimerase M1S47_04660 PF00875 DNA photolyase M1S47_04660 PF03441 FAD binding domain of DNA photolyase M1S47_04665 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase M1S47_04670 PF07992 Pyridine nucleotide-disulphide oxidoreductase M1S47_04675 PF07943 Penicillin-binding protein 5, C-terminal domain M1S47_04675 PF00768 D-alanyl-D-alanine carboxypeptidase M1S47_04685 PF03971 Monomeric isocitrate dehydrogenase M1S47_04690 PF00849 RNA pseudouridylate synthase M1S47_04695 PF00180 Isocitrate/isopropylmalate dehydrogenase M1S47_04715 PF06779 Uncharacterised MFS-type transporter YbfB M1S47_04720 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M1S47_04720 PF03466 LysR substrate binding domain M1S47_04725 PF00375 Sodium:dicarboxylate symporter family M1S47_04730 PF02567 Phenazine biosynthesis-like protein M1S47_04735 PF05193 Peptidase M16 inactive domain M1S47_04735 PF00675 Insulinase (Peptidase family M16) M1S47_04760 PF02581 Thiamine monophosphate synthase M1S47_04780 PF18339 RapA N-terminal Tudor like domain 1 M1S47_04780 PF18337 RapA N-terminal Tudor like domain M1S47_04780 PF12137 RNA polymerase recycling family C-terminal M1S47_04780 PF00271 Helicase conserved C-terminal domain M1S47_04780 PF00176 SNF2 family N-terminal domain M1S47_04790 PF00440 Bacterial regulatory proteins, tetR family M1S47_04795 PF00970 Oxidoreductase FAD-binding domain M1S47_04795 PF00175 Oxidoreductase NAD-binding domain M1S47_04795 PF00111 2Fe-2S iron-sulfur cluster binding domain M1S47_04800 PF00487 Fatty acid desaturase M1S47_04810 PF17754 MftR C-terminal domain M1S47_04810 PF00440 Bacterial regulatory proteins, tetR family M1S47_04820 PF00202 Aminotransferase class-III M1S47_04825 PF00282 Pyridoxal-dependent decarboxylase conserved domain M1S47_04830 PF00171 Aldehyde dehydrogenase family M1S47_04835 PF01037 Lrp/AsnC ligand binding domain M1S47_04840 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain M1S47_04840 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain M1S47_04840 PF00205 Thiamine pyrophosphate enzyme, central domain M1S47_04845 PF00324 Amino acid permease M1S47_04850 PF12849 PBP superfamily domain M1S47_04855 PF00528 Binding-protein-dependent transport system inner membrane component M1S47_04860 PF00528 Binding-protein-dependent transport system inner membrane component M1S47_04865 PF00005 ABC transporter M1S47_04870 PF08496 Peptidase family S49 N-terminal M1S47_04870 PF01343 Peptidase family S49 M1S47_04885 PF00206 Lyase M1S47_04885 PF08328 Adenylosuccinate lyase C-terminal M1S47_04890 PF04356 Protein of unknown function (DUF489) M1S47_04900 PF00293 NUDIX domain M1S47_04900 PF13344 Haloacid dehalogenase-like hydrolase M1S47_04905 PF00132 Bacterial transferase hexapeptide (six repeats) M1S47_04910 PF07943 Penicillin-binding protein 5, C-terminal domain M1S47_04910 PF00768 D-alanyl-D-alanine carboxypeptidase M1S47_04925 PF01975 Survival protein SurE M1S47_04930 PF01476 LysM domain M1S47_04930 PF01551 Peptidase family M23 M1S47_04935 PF03466 LysR substrate binding domain M1S47_04935 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M1S47_04940 PF05362 Lon protease (S16) C-terminal proteolytic domain M1S47_04940 PF13654 AAA domain M1S47_04945 PF07690 Major Facilitator Superfamily M1S47_04950 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily M1S47_04955 PF13593 SBF-like CPA transporter family (DUF4137) M1S47_04960 PF01197 Ribosomal protein L31 M1S47_04975 PF04055 Radical SAM superfamily M1S47_04980 PF08207 Elongation factor P (EF-P) KOW-like domain M1S47_04980 PF09285 Elongation factor P, C-terminal M1S47_04980 PF01132 Elongation factor P (EF-P) OB domain M1S47_04985 PF02554 Carbon starvation protein CstA M1S47_04985 PF13722 5TM C-terminal transporter carbon starvation CstA M1S47_04990 PF04328 Selenoprotein, putative M1S47_05025 PF06018 CodY GAF-like domain M1S47_05025 PF17853 GGDEF-like domain M1S47_05025 PF13556 PucR C-terminal helix-turn-helix domain M1S47_05040 PF00171 Aldehyde dehydrogenase family M1S47_05045 PF00324 Amino acid permease M1S47_05050 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M1S47_05050 PF03466 LysR substrate binding domain M1S47_05055 PF02028 BCCT, betaine/carnitine/choline family transporter M1S47_05060 PF02028 BCCT, betaine/carnitine/choline family transporter M1S47_05065 PF00355 Rieske [2Fe-2S] domain M1S47_05065 PF00848 Ring hydroxylating alpha subunit (catalytic domain) M1S47_05070 PF00171 Aldehyde dehydrogenase family M1S47_05080 PF07992 Pyridine nucleotide-disulphide oxidoreductase M1S47_05080 PF18113 Rubredoxin binding C-terminal domain M1S47_05085 PF01266 FAD dependent oxidoreductase M1S47_05085 PF05430 S-adenosyl-L-methionine-dependent methyltransferase M1S47_05105 PF00892 EamA-like transporter family M1S47_05115 PF02604 Antitoxin Phd_YefM, type II toxin-antitoxin system M1S47_05120 PF00083 Sugar (and other) transporter M1S47_05125 PF13378 Enolase C-terminal domain-like M1S47_05125 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain M1S47_05130 PF00550 Phosphopantetheine attachment site M1S47_05130 PF08659 KR domain M1S47_05130 PF02801 Beta-ketoacyl synthase, C-terminal domain M1S47_05130 PF00109 Beta-ketoacyl synthase, N-terminal domain M1S47_05130 PF16197 Ketoacyl-synthetase C-terminal extension M1S47_05130 PF14765 Polyketide synthase dehydratase M1S47_05130 PF08990 Erythronolide synthase docking M1S47_05130 PF08240 Alcohol dehydrogenase GroES-like domain M1S47_05130 PF00698 Acyl transferase domain M1S47_05130 PF09277 Erythronolide synthase, docking M1S47_05135 PF00440 Bacterial regulatory proteins, tetR family M1S47_05155 PF17954 Quercetinase C-terminal cupin domain M1S47_05155 PF02678 Pirin M1S47_05165 PF13309 HTH domain M1S47_05165 PF08348 YheO-like PAS domain M1S47_05175 PF00501 AMP-binding enzyme M1S47_05175 PF13193 AMP-binding enzyme C-terminal domain M1S47_05175 PF00668 Condensation domain M1S47_05175 PF00550 Phosphopantetheine attachment site M1S47_05180 PF00975 Thioesterase domain M1S47_05180 PF00501 AMP-binding enzyme M1S47_05180 PF13193 AMP-binding enzyme C-terminal domain M1S47_05180 PF00668 Condensation domain M1S47_05180 PF00550 Phosphopantetheine attachment site M1S47_05185 PF01032 FecCD transport family M1S47_05190 PF01032 FecCD transport family M1S47_05195 PF00005 ABC transporter M1S47_05200 PF01497 Periplasmic binding protein M1S47_05205 PF07715 TonB-dependent Receptor Plug Domain M1S47_05205 PF00593 TonB dependent receptor M1S47_05210 PF13434 L-lysine 6-monooxygenase (NADPH-requiring) M1S47_05215 PF00550 Phosphopantetheine attachment site M1S47_05215 PF00668 Condensation domain M1S47_05215 PF00501 AMP-binding enzyme M1S47_05220 PF13193 AMP-binding enzyme C-terminal domain M1S47_05220 PF00501 AMP-binding enzyme M1S47_05225 PF00550 Phosphopantetheine attachment site M1S47_05225 PF00857 Isochorismatase family M1S47_05230 PF00282 Pyridoxal-dependent decarboxylase conserved domain M1S47_05240 PF00005 ABC transporter M1S47_05245 PF00005 ABC transporter M1S47_05250 PF00975 Thioesterase domain M1S47_05260 PF00425 chorismate binding enzyme M1S47_05270 PF01208 Uroporphyrinogen decarboxylase (URO-D) M1S47_05275 PF05675 Protein of unknown function (DUF817) M1S47_05290 PF00144 Beta-lactamase M1S47_05300 PF01227 GTP cyclohydrolase I M1S47_05305 PF00111 2Fe-2S iron-sulfur cluster binding domain M1S47_05305 PF01799 [2Fe-2S] binding domain M1S47_05310 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain M1S47_05310 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase M1S47_05325 PF00218 Indole-3-glycerol phosphate synthase M1S47_05330 PF00591 Glycosyl transferase family, a/b domain M1S47_05330 PF02885 Glycosyl transferase family, helical bundle domain M1S47_05335 PF07715 TonB-dependent Receptor Plug Domain M1S47_05335 PF00593 TonB dependent receptor M1S47_05340 PF11838 ERAP1-like C-terminal domain M1S47_05340 PF01433 Peptidase family M1 domain M1S47_05345 PF00117 Glutamine amidotransferase class-I M1S47_05355 PF00854 POT family M1S47_05360 PF00120 Glutamine synthetase, catalytic domain M1S47_05360 PF03951 Glutamine synthetase, beta-Grasp domain M1S47_05365 PF04345 Chorismate lyase M1S47_05370 PF01040 UbiA prenyltransferase family M1S47_05405 PF02777 Iron/manganese superoxide dismutases, C-terminal domain M1S47_05405 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain M1S47_05410 PF01784 NIF3 (NGG1p interacting factor 3) M1S47_05415 PF13180 PDZ domain M1S47_05420 PF01743 Poly A polymerase head domain M1S47_05420 PF12627 Probable RNA and SrmB- binding site of polymerase A M1S47_05425 PF00390 Malic enzyme, N-terminal domain M1S47_05425 PF01515 Phosphate acetyl/butaryl transferase M1S47_05425 PF03949 Malic enzyme, NAD binding domain M1S47_05430 PF00563 EAL domain M1S47_05430 PF00990 Diguanylate cyclase, GGDEF domain M1S47_05430 PF03707 Bacterial signalling protein N terminal repeat M1S47_05435 PF04452 RNA methyltransferase M1S47_05440 PF02219 Methylenetetrahydrofolate reductase M1S47_05445 PF05221 S-adenosyl-L-homocysteine hydrolase M1S47_05445 PF00670 S-adenosyl-L-homocysteine hydrolase, NAD binding domain M1S47_05460 PF00441 Acyl-CoA dehydrogenase, C-terminal domain M1S47_05460 PF02771 Acyl-CoA dehydrogenase, N-terminal domain M1S47_05460 PF09317 Domain of unknown function (DUF1974) M1S47_05465 PF04055 Radical SAM superfamily M1S47_05470 PF07992 Pyridine nucleotide-disulphide oxidoreductase M1S47_05470 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain M1S47_05480 PF07690 Major Facilitator Superfamily M1S47_05490 PF00557 Metallopeptidase family M24 M1S47_05495 PF00318 Ribosomal protein S2 M1S47_05500 PF00889 Elongation factor TS M1S47_05510 PF12833 Helix-turn-helix domain M1S47_05530 PF05036 Sporulation related domain M1S47_05530 PF03330 Lytic transglycolase M1S47_05535 PF13406 Transglycosylase SLT domain M1S47_05540 PF01098 Cell cycle protein M1S47_05550 PF14489 QueF-like protein M1S47_05550 PF14819 Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term M1S47_05555 PF01061 ABC-2 type transporter M1S47_05560 PF00005 ABC transporter M1S47_05590 PF00464 Serine hydroxymethyltransferase M1S47_05595 PF02321 Outer membrane efflux protein M1S47_05600 PF00873 AcrB/AcrD/AcrF family M1S47_05605 PF13533 Biotin-lipoyl like M1S47_05610 PF03466 LysR substrate binding domain M1S47_05610 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M1S47_05615 PF00497 Bacterial extracellular solute-binding proteins, family 3 M1S47_05620 PF00528 Binding-protein-dependent transport system inner membrane component M1S47_05625 PF00528 Binding-protein-dependent transport system inner membrane component M1S47_05630 PF00005 ABC transporter M1S47_05635 PF00893 Small Multidrug Resistance protein M1S47_05640 PF00037 4Fe-4S binding domain M1S47_05645 PF16325 Peptidase family U32 C-terminal domain M1S47_05645 PF01136 Peptidase family U32 M1S47_05650 PF00155 Aminotransferase class I and II M1S47_05650 PF00392 Bacterial regulatory proteins, gntR family M1S47_05655 PF02567 Phenazine biosynthesis-like protein M1S47_05660 PF00970 Oxidoreductase FAD-binding domain M1S47_05660 PF00175 Oxidoreductase NAD-binding domain M1S47_05665 PF01980 tRNA-methyltransferase O M1S47_05665 PF18389 TrmO C-terminal domain M1S47_05675 PF00437 Type II/IV secretion system protein M1S47_05675 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain M1S47_05685 PF00072 Response regulator receiver domain M1S47_05685 PF00486 Transcriptional regulatory protein, C terminal M1S47_05690 PF08521 Two-component sensor kinase N-terminal M1S47_05690 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M1S47_05690 PF00512 His Kinase A (phospho-acceptor) domain M1S47_05700 PF00293 NUDIX domain M1S47_05710 PF14814 Bifunctional transglycosylase second domain M1S47_05710 PF00912 Transglycosylase M1S47_05710 PF00905 Penicillin binding protein transpeptidase domain M1S47_05715 PF01513 ATP-NAD kinase M1S47_05720 PF07023 Protein of unknown function (DUF1315) M1S47_05725 PF02885 Glycosyl transferase family, helical bundle domain M1S47_05725 PF00591 Glycosyl transferase family, a/b domain M1S47_05730 PF00375 Sodium:dicarboxylate symporter family M1S47_05735 PF00441 Acyl-CoA dehydrogenase, C-terminal domain M1S47_05735 PF02770 Acyl-CoA dehydrogenase, middle domain M1S47_05735 PF02771 Acyl-CoA dehydrogenase, N-terminal domain M1S47_05740 PF00756 Putative esterase M1S47_05745 PF01842 ACT domain M1S47_05745 PF01817 Chorismate mutase type II M1S47_05745 PF00800 Prephenate dehydratase M1S47_05750 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) M1S47_05760 PF07687 Peptidase dimerisation domain M1S47_05760 PF01546 Peptidase family M20/M25/M40 M1S47_05765 PF12706 Beta-lactamase superfamily domain M1S47_05775 PF03883 Peroxide stress protein YaaA M1S47_05785 PF05690 Thiazole biosynthesis protein ThiG M1S47_05795 PF04241 Protein of unknown function (DUF423) M1S47_05800 PF04542 Sigma-70 region 2 M1S47_05800 PF00140 Sigma-70 factor, region 1.2 M1S47_05800 PF04545 Sigma-70, region 4 M1S47_05815 PF00313 'Cold-shock' DNA-binding domain M1S47_05820 PF00271 Helicase conserved C-terminal domain M1S47_05820 PF00270 DEAD/DEAH box helicase M1S47_05830 PF00881 Nitroreductase family M1S47_05835 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus M1S47_05835 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus M1S47_05845 PF00589 Phage integrase family M1S47_05940 PF01555 DNA methylase M1S47_06175 PF01180 Dihydroorotate dehydrogenase M1S47_06180 PF02674 Colicin V production protein M1S47_06185 PF00156 Phosphoribosyl transferase domain M1S47_06200 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain M1S47_06200 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain M1S47_06205 PF01435 Peptidase family M48 M1S47_06210 PF09424 Yqey-like protein M1S47_06215 PF01165 Ribosomal protein S21 M1S47_06220 PF00814 Glycoprotease family M1S47_06240 PF00069 Protein kinase domain M1S47_06265 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M1S47_06265 PF03466 LysR substrate binding domain M1S47_06270 PF00202 Aminotransferase class-III M1S47_06275 PF00171 Aldehyde dehydrogenase family M1S47_06280 PF00324 Amino acid permease M1S47_06310 PF04076 Bacterial OB fold (BOF) protein M1S47_06335 PF00561 alpha/beta hydrolase fold M1S47_06340 PF03616 Sodium/glutamate symporter M1S47_06350 PF07729 FCD domain M1S47_06350 PF00392 Bacterial regulatory proteins, gntR family M1S47_06400 PF08946 Osmosensory transporter coiled coil M1S47_06400 PF00083 Sugar (and other) transporter M1S47_06425 PF00155 Aminotransferase class I and II M1S47_06430 PF02080 TrkA-C domain M1S47_06430 PF06826 Predicted Permease Membrane Region M1S47_06440 PF04403 Paraquat-inducible protein A M1S47_06445 PF02470 MlaD protein M1S47_06455 PF01177 Asp/Glu/Hydantoin racemase M1S47_06460 PF00892 EamA-like transporter family M1S47_06465 PF07995 Glucose / Sorbosone dehydrogenase M1S47_06475 PF13610 DDE domain M1S47_06485 PF01636 Phosphotransferase enzyme family M1S47_06490 PF13610 DDE domain M1S47_06505 PF00132 Bacterial transferase hexapeptide (six repeats) M1S47_06515 PF00893 Small Multidrug Resistance protein M1S47_06520 PF00809 Pterin binding enzyme M1S47_06535 PF07091 Ribosomal RNA methyltransferase (FmrO) M1S47_06550 PF12848 ABC transporter M1S47_06550 PF00005 ABC transporter M1S47_06555 PF01636 Phosphotransferase enzyme family M1S47_06565 PF03050 Transposase IS66 family M1S47_06565 PF13817 IS66 C-terminal element M1S47_06565 PF13007 Transposase C of IS166 homeodomain M1S47_06565 PF13005 zinc-finger binding domain of transposase IS66 M1S47_06570 PF13610 DDE domain M1S47_06585 PF13419 Haloacid dehalogenase-like hydrolase M1S47_06595 PF13296 Putative type VI secretion system Rhs element Vgr M1S47_06595 PF04717 Type VI secretion system, phage-baseplate injector M1S47_06595 PF10106 Uncharacterized protein conserved in bacteria (DUF2345) M1S47_06600 PF05593 RHS Repeat M1S47_06600 PF03527 RHS protein M1S47_06615 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M1S47_06615 PF03466 LysR substrate binding domain M1S47_06620 PF01566 Natural resistance-associated macrophage protein M1S47_06625 PF03746 LamB/YcsF family M1S47_06630 PF07286 Protein of unknown function (DUF1445) M1S47_06640 PF00364 Biotin-requiring enzyme M1S47_06640 PF00289 Biotin carboxylase, N-terminal domain M1S47_06640 PF02785 Biotin carboxylase C-terminal domain M1S47_06640 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain M1S47_06645 PF00654 Voltage gated chloride channel M1S47_06665 PF00440 Bacterial regulatory proteins, tetR family M1S47_06675 PF08240 Alcohol dehydrogenase GroES-like domain M1S47_06675 PF13823 Alcohol dehydrogenase GroES-associated M1S47_06675 PF00107 Zinc-binding dehydrogenase M1S47_06690 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain M1S47_06690 PF02785 Biotin carboxylase C-terminal domain M1S47_06690 PF00289 Biotin carboxylase, N-terminal domain M1S47_06695 PF02525 Flavodoxin-like fold M1S47_06715 PF01402 Ribbon-helix-helix protein, copG family M1S47_06715 PF08753 NikR C terminal nickel binding domain M1S47_06720 PF01425 Amidase M1S47_06725 PF00497 Bacterial extracellular solute-binding proteins, family 3 M1S47_06730 PF00005 ABC transporter M1S47_06755 PF05943 Type VI secretion protein, EvpB/VC_A0108, tail sheath M1S47_06770 PF05947 Type VI secretion system, TssF M1S47_06785 PF14331 ImcF-related N-terminal domain M1S47_06785 PF06761 Intracellular multiplication and human macrophage-killing M1S47_06785 PF06744 Type VI secretion protein IcmF C-terminal M1S47_06795 PF00691 OmpA family M1S47_06795 PF01389 OmpA-like transmembrane domain M1S47_06810 PF00004 ATPase family associated with various cellular activities (AAA) M1S47_06810 PF10431 C-terminal, D2-small domain, of ClpB protein M1S47_06810 PF17871 AAA lid domain M1S47_06810 PF07724 AAA domain (Cdc48 subfamily) M1S47_06815 PF06812 ImpA, N-terminal, type VI secretion system M1S47_06820 PF05936 Bacterial Type VI secretion, VC_A0110, EvfL, ImpJ, VasE M1S47_06840 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M1S47_06840 PF03466 LysR substrate binding domain M1S47_06850 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region M1S47_06855 PF07690 Major Facilitator Superfamily M1S47_06870 PF02677 Epoxyqueuosine reductase QueH M1S47_06885 PF00376 MerR family regulatory protein M1S47_06885 PF09278 MerR, DNA binding M1S47_06895 PF00701 Dihydrodipicolinate synthetase family M1S47_06905 PF00392 Bacterial regulatory proteins, gntR family M1S47_06910 PF05544 Proline racemase M1S47_06915 PF01266 FAD dependent oxidoreductase M1S47_06925 PF07992 Pyridine nucleotide-disulphide oxidoreductase M1S47_06925 PF04324 BFD-like [2Fe-2S] binding domain M1S47_06935 PF00083 Sugar (and other) transporter M1S47_06940 PF00171 Aldehyde dehydrogenase family M1S47_06945 PF13520 Amino acid permease M1S47_06950 PF03313 Serine dehydratase alpha chain M1S47_06950 PF03315 Serine dehydratase beta chain M1S47_06955 PF01575 MaoC like domain M1S47_06955 PF00171 Aldehyde dehydrogenase family M1S47_06960 PF05138 Phenylacetic acid catabolic protein M1S47_06965 PF06243 Phenylacetic acid degradation B M1S47_06970 PF05138 Phenylacetic acid catabolic protein M1S47_06975 PF01883 Iron-sulfur cluster assembly protein M1S47_06980 PF00970 Oxidoreductase FAD-binding domain M1S47_06980 PF00111 2Fe-2S iron-sulfur cluster binding domain M1S47_06980 PF00175 Oxidoreductase NAD-binding domain M1S47_06985 PF00378 Enoyl-CoA hydratase/isomerase M1S47_06990 PF00378 Enoyl-CoA hydratase/isomerase M1S47_06995 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain M1S47_06995 PF18321 3-hydroxybutyryl-CoA dehydrogenase reduced Rossmann-fold domain M1S47_06995 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain M1S47_07000 PF00108 Thiolase, N-terminal domain M1S47_07000 PF02803 Thiolase, C-terminal domain M1S47_07005 PF14535 AMP-binding enzyme C-terminal domain M1S47_07005 PF00501 AMP-binding enzyme M1S47_07010 PF08223 PaaX-like protein C-terminal domain M1S47_07010 PF07848 PaaX-like protein M1S47_07015 PF00132 Bacterial transferase hexapeptide (six repeats) M1S47_07020 PF03061 Thioesterase superfamily M1S47_07055 PF00199 Catalase M1S47_07060 PF01292 Prokaryotic cytochrome b561 M1S47_07080 PF12697 Alpha/beta hydrolase family M1S47_07085 PF01613 Flavin reductase like domain M1S47_07090 PF00296 Luciferase-like monooxygenase M1S47_07095 PF00171 Aldehyde dehydrogenase family M1S47_07105 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin M1S47_07115 PF00171 Aldehyde dehydrogenase family M1S47_07120 PF02627 Carboxymuconolactone decarboxylase family M1S47_07125 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M1S47_07125 PF03466 LysR substrate binding domain M1S47_07130 PF02525 Flavodoxin-like fold M1S47_07135 PF09339 IclR helix-turn-helix domain M1S47_07135 PF01614 Bacterial transcriptional regulator M1S47_07140 PF01494 FAD binding domain M1S47_07145 PF07702 UTRA domain M1S47_07145 PF00392 Bacterial regulatory proteins, gntR family M1S47_07155 PF08402 TOBE domain M1S47_07155 PF00005 ABC transporter M1S47_07160 PF00528 Binding-protein-dependent transport system inner membrane component M1S47_07165 PF01266 FAD dependent oxidoreductase M1S47_07170 PF00266 Aminotransferase class-V M1S47_07175 PF13419 Haloacid dehalogenase-like hydrolase M1S47_07180 PF07690 Major Facilitator Superfamily M1S47_07185 PF00441 Acyl-CoA dehydrogenase, C-terminal domain M1S47_07185 PF02770 Acyl-CoA dehydrogenase, middle domain M1S47_07185 PF02771 Acyl-CoA dehydrogenase, N-terminal domain M1S47_07190 PF02515 CoA-transferase family III M1S47_07195 PF09339 IclR helix-turn-helix domain M1S47_07200 PF00378 Enoyl-CoA hydratase/isomerase M1S47_07205 PF03060 Nitronate monooxygenase M1S47_07210 PF07690 Major Facilitator Superfamily M1S47_07215 PF09339 IclR helix-turn-helix domain M1S47_07220 PF00108 Thiolase, N-terminal domain M1S47_07220 PF02803 Thiolase, C-terminal domain M1S47_07225 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain M1S47_07225 PF18321 3-hydroxybutyryl-CoA dehydrogenase reduced Rossmann-fold domain M1S47_07225 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain M1S47_07235 PF00378 Enoyl-CoA hydratase/isomerase M1S47_07240 PF02771 Acyl-CoA dehydrogenase, N-terminal domain M1S47_07240 PF02770 Acyl-CoA dehydrogenase, middle domain M1S47_07240 PF00441 Acyl-CoA dehydrogenase, C-terminal domain M1S47_07245 PF07690 Major Facilitator Superfamily M1S47_07250 PF01144 Coenzyme A transferase M1S47_07255 PF01144 Coenzyme A transferase M1S47_07265 PF07690 Major Facilitator Superfamily M1S47_07275 PF00441 Acyl-CoA dehydrogenase, C-terminal domain M1S47_07275 PF02770 Acyl-CoA dehydrogenase, middle domain M1S47_07275 PF02771 Acyl-CoA dehydrogenase, N-terminal domain M1S47_07275 PF12806 Acetyl-CoA dehydrogenase C-terminal like M1S47_07290 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M1S47_07290 PF03466 LysR substrate binding domain M1S47_07295 PF00682 HMGL-like M1S47_07300 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain M1S47_07300 PF18140 Propionyl-coenzyme A carboxylase BT domain M1S47_07300 PF00289 Biotin carboxylase, N-terminal domain M1S47_07300 PF00364 Biotin-requiring enzyme M1S47_07300 PF02785 Biotin carboxylase C-terminal domain M1S47_07305 PF00378 Enoyl-CoA hydratase/isomerase M1S47_07310 PF01039 Carboxyl transferase domain M1S47_07315 PF02771 Acyl-CoA dehydrogenase, N-terminal domain M1S47_07315 PF00441 Acyl-CoA dehydrogenase, C-terminal domain M1S47_07315 PF02770 Acyl-CoA dehydrogenase, middle domain M1S47_07320 PF00440 Bacterial regulatory proteins, tetR family M1S47_07325 PF13193 AMP-binding enzyme C-terminal domain M1S47_07325 PF00501 AMP-binding enzyme M1S47_07350 PF03466 LysR substrate binding domain M1S47_07350 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M1S47_07385 PF18146 Damage-inducible protein CinA KH domain M1S47_07385 PF00994 Probable molybdopterin binding domain M1S47_07385 PF02464 Competence-damaged protein M1S47_07395 PF00199 Catalase M1S47_07395 PF18011 C-terminal domain found in long catalases M1S47_07395 PF06628 Catalase-related immune-responsive M1S47_07420 PF00717 Peptidase S24-like M1S47_07430 PF01037 Lrp/AsnC ligand binding domain M1S47_07430 PF13404 AsnC-type helix-turn-helix domain M1S47_07440 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M1S47_07440 PF00512 His Kinase A (phospho-acceptor) domain M1S47_07440 PF09308 LuxQ, periplasmic M1S47_07440 PF00072 Response regulator receiver domain M1S47_07445 PF00072 Response regulator receiver domain M1S47_07460 PF00528 Binding-protein-dependent transport system inner membrane component M1S47_07465 PF00528 Binding-protein-dependent transport system inner membrane component M1S47_07470 PF00005 ABC transporter M1S47_07475 PF00497 Bacterial extracellular solute-binding proteins, family 3 M1S47_07480 PF00497 Bacterial extracellular solute-binding proteins, family 3 M1S47_07490 PF03466 LysR substrate binding domain M1S47_07490 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M1S47_07495 PF01810 LysE type translocator M1S47_07505 PF00266 Aminotransferase class-V M1S47_07515 PF00132 Bacterial transferase hexapeptide (six repeats) M1S47_07520 PF00581 Rhodanese-like domain M1S47_07530 PF03466 LysR substrate binding domain M1S47_07530 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M1S47_07535 PF02798 Glutathione S-transferase, N-terminal domain M1S47_07540 PF02798 Glutathione S-transferase, N-terminal domain M1S47_07540 PF14834 Glutathione S-transferase, C-terminal domain M1S47_07545 PF03466 LysR substrate binding domain M1S47_07545 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M1S47_07550 PF03788 LrgA family M1S47_07555 PF04172 LrgB-like family M1S47_07560 PF00155 Aminotransferase class I and II M1S47_07560 PF00392 Bacterial regulatory proteins, gntR family M1S47_07575 PF07690 Major Facilitator Superfamily M1S47_07580 PF16957 Malonate decarboxylase, alpha subunit, transporter M1S47_07585 PF01874 ATP:dephospho-CoA triphosphoribosyl transferase M1S47_07590 PF06857 Malonate decarboxylase delta subunit (MdcD) M1S47_07595 PF01039 Carboxyl transferase domain M1S47_07605 PF10620 Phosphoribosyl-dephospho-CoA transferase MdcG M1S47_07610 PF00698 Acyl transferase domain M1S47_07625 PF03466 LysR substrate binding domain M1S47_07625 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M1S47_07630 PF00155 Aminotransferase class I and II M1S47_07630 PF00392 Bacterial regulatory proteins, gntR family M1S47_07640 PF02322 Cytochrome bd terminal oxidase subunit II M1S47_07645 PF01654 Cytochrome bd terminal oxidase subunit I M1S47_07655 PF02770 Acyl-CoA dehydrogenase, middle domain M1S47_07655 PF08028 Acyl-CoA dehydrogenase, C-terminal domain M1S47_07655 PF02771 Acyl-CoA dehydrogenase, N-terminal domain M1S47_07660 PF00296 Luciferase-like monooxygenase M1S47_07665 PF00083 Sugar (and other) transporter M1S47_07675 PF04069 Substrate binding domain of ABC-type glycine betaine transport system M1S47_07680 PF00005 ABC transporter M1S47_07685 PF00528 Binding-protein-dependent transport system inner membrane component M1S47_07690 PF02668 Taurine catabolism dioxygenase TauD, TfdA family M1S47_07695 PF01177 Asp/Glu/Hydantoin racemase M1S47_07700 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin M1S47_07710 PF03466 LysR substrate binding domain M1S47_07710 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M1S47_07720 PF13382 Adenine deaminase C-terminal domain M1S47_07720 PF01979 Amidohydrolase family M1S47_07730 PF03960 ArsC family M1S47_07735 PF01022 Bacterial regulatory protein, arsR family M1S47_07740 PF01758 Sodium Bile acid symporter family M1S47_07745 PF03466 LysR substrate binding domain M1S47_07745 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M1S47_07760 PF13192 Thioredoxin domain M1S47_07760 PF07992 Pyridine nucleotide-disulphide oxidoreductase M1S47_07775 PF00132 Bacterial transferase hexapeptide (six repeats) M1S47_07780 PF00588 SpoU rRNA Methylase family M1S47_07785 PF17657 Bacterial DNA polymerase III alpha subunit finger domain M1S47_07785 PF01336 OB-fold nucleic acid binding domain M1S47_07785 PF02811 PHP domain M1S47_07785 PF14579 Helix-hairpin-helix motif M1S47_07785 PF07733 Bacterial DNA polymerase III alpha NTPase domain M1S47_07790 PF17763 Glutaminase/Asparaginase C-terminal domain M1S47_07790 PF00710 Asparaginase, N-terminal M1S47_07795 PF00375 Sodium:dicarboxylate symporter family M1S47_07800 PF00155 Aminotransferase class I and II M1S47_07805 PF01641 SelR domain M1S47_07810 PF00255 Glutathione peroxidase M1S47_07815 PF12852 Cupin M1S47_07815 PF12833 Helix-turn-helix domain M1S47_07825 PF00155 Aminotransferase class I and II M1S47_07830 PF08335 GlnD PII-uridylyltransferase M1S47_07830 PF01909 Nucleotidyltransferase domain M1S47_07830 PF01966 HD domain M1S47_07835 PF02222 ATP-grasp domain M1S47_07845 PF05437 Branched-chain amino acid transport protein (AzlD) M1S47_07850 PF03591 AzlC protein M1S47_07875 PF06071 Protein of unknown function (DUF933) M1S47_07875 PF01926 50S ribosome-binding GTPase M1S47_07880 PF00528 Binding-protein-dependent transport system inner membrane component M1S47_07900 PF03180 NLPA lipoprotein M1S47_07905 PF03180 NLPA lipoprotein M1S47_07910 PF00296 Luciferase-like monooxygenase M1S47_07920 PF02771 Acyl-CoA dehydrogenase, N-terminal domain M1S47_07920 PF08028 Acyl-CoA dehydrogenase, C-terminal domain M1S47_07935 PF00528 Binding-protein-dependent transport system inner membrane component M1S47_07940 PF00528 Binding-protein-dependent transport system inner membrane component M1S47_07945 PF00005 ABC transporter M1S47_07960 PF01037 Lrp/AsnC ligand binding domain M1S47_07965 PF01709 Transcriptional regulator M1S47_07975 PF00440 Bacterial regulatory proteins, tetR family M1S47_07995 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M1S47_07995 PF03466 LysR substrate binding domain M1S47_08005 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin M1S47_08015 PF00892 EamA-like transporter family M1S47_08035 PF00577 Outer membrane usher protein M1S47_08035 PF13954 PapC N-terminal domain M1S47_08035 PF13953 PapC C-terminal domain M1S47_08040 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain M1S47_08040 PF02753 Pili assembly chaperone PapD, C-terminal domain M1S47_08045 PF16970 Type-1 fimbrial protein, A M1S47_08060 PF06968 Biotin and Thiamin Synthesis associated domain M1S47_08060 PF04055 Radical SAM superfamily M1S47_08065 PF08331 Domain of unknown function (DUF1730) M1S47_08075 PF02075 Crossover junction endodeoxyribonuclease RuvC M1S47_08090 PF00905 Penicillin binding protein transpeptidase domain M1S47_08110 PF02773 S-adenosylmethionine synthetase, C-terminal domain M1S47_08110 PF02772 S-adenosylmethionine synthetase, central domain M1S47_08110 PF00438 S-adenosylmethionine synthetase, N-terminal domain M1S47_08115 PF02779 Transketolase, pyrimidine binding domain M1S47_08115 PF02780 Transketolase, C-terminal domain M1S47_08115 PF00456 Transketolase, thiamine diphosphate binding domain M1S47_08125 PF04264 YceI-like domain M1S47_08135 PF09992 Phosphodiester glycosidase M1S47_08145 PF05958 tRNA (Uracil-5-)-methyltransferase M1S47_08150 PF04229 GrpB protein M1S47_08155 PF14850 DNA-binding domain of Proline dehydrogenase M1S47_08155 PF00171 Aldehyde dehydrogenase family M1S47_08155 PF01619 Proline dehydrogenase M1S47_08155 PF18327 Proline utilization A proline dehydrogenase N-terminal domain M1S47_08160 PF01037 Lrp/AsnC ligand binding domain M1S47_08165 PF00474 Sodium:solute symporter family M1S47_08170 PF02146 Sir2 family M1S47_08175 PF01597 Glycine cleavage H-protein M1S47_08180 PF12833 Helix-turn-helix domain M1S47_08180 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term M1S47_08190 PF00005 ABC transporter M1S47_08190 PF00664 ABC transporter transmembrane region M1S47_08195 PF09831 Uncharacterized protein conserved in bacteria (DUF2058) M1S47_08200 PF06912 Protein of unknown function (DUF1275) M1S47_08205 PF00375 Sodium:dicarboxylate symporter family M1S47_08220 PF08007 Cupin superfamily protein M1S47_08225 PF02545 Maf-like protein M1S47_08235 PF00162 Phosphoglycerate kinase M1S47_08245 PF01116 Fructose-bisphosphate aldolase class-II M1S47_08250 PF09312 SurA N-terminal domain M1S47_08250 PF00639 PPIC-type PPIASE domain M1S47_08255 PF04453 LPS transport system D M1S47_08255 PF03968 OstA-like protein M1S47_08260 PF01636 Phosphotransferase enzyme family M1S47_08265 PF00483 Nucleotidyl transferase M1S47_08270 PF02527 rRNA small subunit methyltransferase G M1S47_08275 PF13614 AAA domain M1S47_08280 PF17762 HTH domain found in ParB protein M1S47_08280 PF02195 ParB-like nuclease domain M1S47_08285 PF01618 MotA/TolQ/ExbB proton channel family M1S47_08295 PF00005 ABC transporter M1S47_08295 PF00664 ABC transporter transmembrane region M1S47_08300 PF02606 Tetraacyldisaccharide-1-P 4'-kinase M1S47_08305 PF02348 Cytidylyltransferase M1S47_08310 PF09115 DNA polymerase III, delta subunit, C terminal M1S47_08320 PF01026 TatD related DNase M1S47_08335 PF02501 Type II secretion system (T2SS), protein I M1S47_08335 PF07963 Prokaryotic N-terminal methylation motif M1S47_08340 PF07963 Prokaryotic N-terminal methylation motif M1S47_08340 PF11612 Type II secretion system (T2SS), protein J M1S47_08345 PF03934 Type II secretion system (T2SS), protein K M1S47_08355 PF03167 Uracil DNA glycosylase superfamily M1S47_08365 PF14437 MafB19-like deaminase M1S47_08375 PF02224 Cytidylate kinase M1S47_08380 PF00575 S1 RNA binding domain M1S47_08385 PF00216 Bacterial DNA-binding protein M1S47_08395 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family M1S47_08405 PF00743 Flavin-binding monooxygenase-like M1S47_08415 PF03969 AFG1-like ATPase M1S47_08420 PF01274 Malate synthase M1S47_08430 PF02472 Biopolymer transport protein ExbD/TolR M1S47_08435 PF02472 Biopolymer transport protein ExbD/TolR M1S47_08440 PF01618 MotA/TolQ/ExbB proton channel family M1S47_08450 PF07715 TonB-dependent Receptor Plug Domain M1S47_08450 PF00593 TonB dependent receptor M1S47_08470 PF01432 Peptidase family M3 M1S47_08475 PF00528 Binding-protein-dependent transport system inner membrane component M1S47_08480 PF00528 Binding-protein-dependent transport system inner membrane component M1S47_08485 PF08352 Oligopeptide/dipeptide transporter, C-terminal region M1S47_08485 PF00005 ABC transporter M1S47_08500 PF00459 Inositol monophosphatase family M1S47_08510 PF01649 Ribosomal protein S20 M1S47_08515 PF13460 NAD(P)H-binding M1S47_08520 PF03737 Aldolase/RraA M1S47_08550 PF03461 TRCF domain M1S47_08550 PF02559 CarD-like/TRCF domain M1S47_08550 PF00270 DEAD/DEAH box helicase M1S47_08550 PF00271 Helicase conserved C-terminal domain M1S47_08550 PF17757 UvrB interaction domain M1S47_08560 PF00211 Adenylate and Guanylate cyclase catalytic domain M1S47_08565 PF00111 2Fe-2S iron-sulfur cluster binding domain M1S47_08570 PF00012 Hsp70 protein M1S47_08575 PF07743 HSCB C-terminal oligomerisation domain M1S47_08575 PF00226 DnaJ domain M1S47_08580 PF01521 Iron-sulphur cluster biosynthesis M1S47_08585 PF01592 NifU-like N terminal domain M1S47_08590 PF00266 Aminotransferase class-V M1S47_08595 PF02082 Transcriptional regulator M1S47_08610 PF00216 Bacterial DNA-binding protein M1S47_08615 PF00639 PPIC-type PPIASE domain M1S47_08615 PF09312 SurA N-terminal domain M1S47_08620 PF12852 Cupin M1S47_08620 PF12833 Helix-turn-helix domain M1S47_08625 PF00487 Fatty acid desaturase M1S47_08630 PF02771 Acyl-CoA dehydrogenase, N-terminal domain M1S47_08630 PF02770 Acyl-CoA dehydrogenase, middle domain M1S47_08630 PF00441 Acyl-CoA dehydrogenase, C-terminal domain M1S47_08635 PF02771 Acyl-CoA dehydrogenase, N-terminal domain M1S47_08635 PF02770 Acyl-CoA dehydrogenase, middle domain M1S47_08635 PF00441 Acyl-CoA dehydrogenase, C-terminal domain M1S47_08640 PF03109 ABC1 family M1S47_08650 PF04073 Aminoacyl-tRNA editing domain M1S47_08655 PF04183 IucA / IucC family M1S47_08655 PF06276 Ferric iron reductase FhuF-like transporter M1S47_08660 PF13434 L-lysine 6-monooxygenase (NADPH-requiring) M1S47_08665 PF07690 Major Facilitator Superfamily M1S47_08670 PF06276 Ferric iron reductase FhuF-like transporter M1S47_08670 PF04183 IucA / IucC family M1S47_08675 PF06276 Ferric iron reductase FhuF-like transporter M1S47_08675 PF04183 IucA / IucC family M1S47_08690 PF07715 TonB-dependent Receptor Plug Domain M1S47_08690 PF00593 TonB dependent receptor M1S47_08715 PF13419 Haloacid dehalogenase-like hydrolase M1S47_08725 PF02283 Cobinamide kinase / cobinamide phosphate guanyltransferase M1S47_08730 PF02277 Phosphoribosyltransferase M1S47_08745 PF02654 Cobalamin-5-phosphate synthase M1S47_08750 PF00793 DAHP synthetase I family M1S47_08755 PF01925 Sulfite exporter TauE/SafE M1S47_08775 PF07715 TonB-dependent Receptor Plug Domain M1S47_08775 PF00593 TonB dependent receptor M1S47_08780 PF02684 Lipid-A-disaccharide synthetase M1S47_08790 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion M1S47_08795 PF00005 ABC transporter M1S47_08830 PF01230 HIT domain M1S47_08860 PF08241 Methyltransferase domain M1S47_08865 PF00561 alpha/beta hydrolase fold M1S47_08870 PF01053 Cys/Met metabolism PLP-dependent enzyme M1S47_08880 PF02575 YbaB/EbfC DNA-binding family M1S47_08885 PF02132 RecR protein M1S47_08885 PF13662 Toprim domain M1S47_08890 PF01612 3'-5' exonuclease M1S47_08890 PF00570 HRDC domain M1S47_08910 PF05166 YcgL domain M1S47_08920 PF00004 ATPase family associated with various cellular activities (AAA) M1S47_08920 PF17862 AAA+ lid domain M1S47_08920 PF01434 Peptidase family M41 M1S47_08930 PF00291 Pyridoxal-phosphate dependent enzyme M1S47_08935 PF05175 Methyltransferase small domain M1S47_08940 PF01264 Chorismate synthase M1S47_08945 PF00990 Diguanylate cyclase, GGDEF domain M1S47_08945 PF08448 PAS fold M1S47_08960 PF04055 Radical SAM superfamily M1S47_08965 PF00676 Dehydrogenase E1 component M1S47_08970 PF02780 Transketolase, C-terminal domain M1S47_08970 PF02779 Transketolase, pyrimidine binding domain M1S47_08975 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) M1S47_08975 PF00364 Biotin-requiring enzyme M1S47_08975 PF02817 e3 binding domain M1S47_08980 PF07992 Pyridine nucleotide-disulphide oxidoreductase M1S47_08980 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain M1S47_08985 PF00106 short chain dehydrogenase M1S47_08990 PF00107 Zinc-binding dehydrogenase M1S47_08990 PF08240 Alcohol dehydrogenase GroES-like domain M1S47_08995 PF01062 Bestrophin, RFP-TM, chloride channel M1S47_09000 PF00072 Response regulator receiver domain M1S47_09000 PF00158 Sigma-54 interaction domain M1S47_09000 PF02954 Bacterial regulatory protein, Fis family M1S47_09005 PF00753 Metallo-beta-lactamase superfamily M1S47_09005 PF04273 Putative phosphatase (DUF442) M1S47_09020 PF01925 Sulfite exporter TauE/SafE M1S47_09035 PF12833 Helix-turn-helix domain M1S47_09035 PF06445 GyrI-like small molecule binding domain M1S47_09040 PF01638 HxlR-like helix-turn-helix M1S47_09045 PF02525 Flavodoxin-like fold M1S47_09055 PF00392 Bacterial regulatory proteins, gntR family M1S47_09055 PF07702 UTRA domain M1S47_09070 PF04069 Substrate binding domain of ABC-type glycine betaine transport system M1S47_09075 PF00528 Binding-protein-dependent transport system inner membrane component M1S47_09080 PF00005 ABC transporter M1S47_09095 PF00083 Sugar (and other) transporter M1S47_09100 PF07715 TonB-dependent Receptor Plug Domain M1S47_09100 PF00593 TonB dependent receptor M1S47_09105 PF00206 Lyase M1S47_09105 PF10415 Fumarase C C-terminus M1S47_09120 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M1S47_09120 PF03466 LysR substrate binding domain M1S47_09125 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M1S47_09125 PF03466 LysR substrate binding domain M1S47_09130 PF00108 Thiolase, N-terminal domain M1S47_09130 PF02803 Thiolase, C-terminal domain M1S47_09135 PF02667 Short chain fatty acid transporter M1S47_09140 PF01144 Coenzyme A transferase M1S47_09145 PF01144 Coenzyme A transferase M1S47_09150 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M1S47_09150 PF03466 LysR substrate binding domain M1S47_09175 PF06719 AraC-type transcriptional regulator N-terminus M1S47_09175 PF12833 Helix-turn-helix domain M1S47_09180 PF07690 Major Facilitator Superfamily M1S47_09200 PF01613 Flavin reductase like domain M1S47_09210 PF14525 AraC-binding-like domain M1S47_09210 PF12833 Helix-turn-helix domain M1S47_09215 PF00970 Oxidoreductase FAD-binding domain M1S47_09215 PF00111 2Fe-2S iron-sulfur cluster binding domain M1S47_09215 PF00175 Oxidoreductase NAD-binding domain M1S47_09220 PF00866 Ring hydroxylating beta subunit M1S47_09225 PF00848 Ring hydroxylating alpha subunit (catalytic domain) M1S47_09225 PF00355 Rieske [2Fe-2S] domain M1S47_09230 PF03459 TOBE domain M1S47_09230 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M1S47_09240 PF00528 Binding-protein-dependent transport system inner membrane component M1S47_09245 PF00005 ABC transporter M1S47_09245 PF03459 TOBE domain M1S47_09250 PF00106 short chain dehydrogenase M1S47_09255 PF00857 Isochorismatase family M1S47_09255 PF00550 Phosphopantetheine attachment site M1S47_09265 PF00149 Calcineurin-like phosphoesterase M1S47_09270 PF13090 Polyphosphate kinase C-terminal domain 2 M1S47_09270 PF02503 Polyphosphate kinase middle domain M1S47_09270 PF17941 Polyphosphate kinase C-terminal domain 1 M1S47_09270 PF13089 Polyphosphate kinase N-terminal domain M1S47_09275 PF08042 PqqA family M1S47_09280 PF12706 Beta-lactamase superfamily domain M1S47_09285 PF03070 TENA/THI-4/PQQC family M1S47_09290 PF05402 Coenzyme PQQ synthesis protein D (PqqD) M1S47_09295 PF04055 Radical SAM superfamily M1S47_09295 PF13186 Iron-sulfur cluster-binding domain M1S47_09300 PF01244 Membrane dipeptidase (Peptidase family M19) M1S47_09315 PF13091 PLD-like domain M1S47_09330 PF00199 Catalase M1S47_09340 PF00107 Zinc-binding dehydrogenase M1S47_09340 PF08240 Alcohol dehydrogenase GroES-like domain M1S47_09350 PF00419 Fimbrial protein M1S47_09355 PF00577 Outer membrane usher protein M1S47_09355 PF13954 PapC N-terminal domain M1S47_09355 PF13953 PapC C-terminal domain M1S47_09360 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain M1S47_09360 PF02753 Pili assembly chaperone PapD, C-terminal domain M1S47_09370 PF16970 Type-1 fimbrial protein, A M1S47_09390 PF01266 FAD dependent oxidoreductase M1S47_09405 PF01593 Flavin containing amine oxidoreductase M1S47_09425 PF12146 Serine aminopeptidase, S33 M1S47_09430 PF02321 Outer membrane efflux protein M1S47_09435 PF00873 AcrB/AcrD/AcrF family M1S47_09440 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion M1S47_09440 PF00529 HlyD membrane-fusion protein of T1SS M1S47_09445 PF00486 Transcriptional regulatory protein, C terminal M1S47_09445 PF00072 Response regulator receiver domain M1S47_09450 PF00672 HAMP domain M1S47_09450 PF16527 Two-component sensor protein CpxA, periplasmic domain M1S47_09450 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M1S47_09450 PF00512 His Kinase A (phospho-acceptor) domain M1S47_09465 PF02311 AraC-like ligand binding domain M1S47_09465 PF12833 Helix-turn-helix domain M1S47_09470 PF12146 Serine aminopeptidase, S33 M1S47_09520 PF04607 Region found in RelA / SpoT proteins M1S47_09520 PF02824 TGS domain M1S47_09520 PF13291 ACT domain M1S47_09530 PF01975 Survival protein SurE M1S47_09555 PF07690 Major Facilitator Superfamily M1S47_09560 PF13533 Biotin-lipoyl like M1S47_09565 PF01425 Amidase M1S47_09570 PF00196 Bacterial regulatory proteins, luxR family M1S47_09645 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family M1S47_09650 PF14572 Phosphoribosyl synthetase-associated domain M1S47_09650 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase M1S47_09670 PF00005 ABC transporter M1S47_09675 PF01032 FecCD transport family M1S47_09685 PF08240 Alcohol dehydrogenase GroES-like domain M1S47_09685 PF00107 Zinc-binding dehydrogenase M1S47_09700 PF12833 Helix-turn-helix domain M1S47_09700 PF06719 AraC-type transcriptional regulator N-terminus M1S47_09705 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase M1S47_09705 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase M1S47_09710 PF07690 Major Facilitator Superfamily M1S47_09715 PF01370 NAD dependent epimerase/dehydratase family M1S47_09725 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M1S47_09725 PF03466 LysR substrate binding domain M1S47_09735 PF00920 Dehydratase family M1S47_09740 PF00171 Aldehyde dehydrogenase family M1S47_09755 PF00529 HlyD membrane-fusion protein of T1SS M1S47_09755 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion M1S47_09790 PF03737 Aldolase/RraA M1S47_09795 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain M1S47_09795 PF01842 ACT domain M1S47_09795 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain M1S47_09800 PF07690 Major Facilitator Superfamily M1S47_09820 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M1S47_09820 PF03466 LysR substrate binding domain M1S47_09830 PF08450 SMP-30/Gluconolactonase/LRE-like region M1S47_09835 PF00392 Bacterial regulatory proteins, gntR family M1S47_09835 PF07702 UTRA domain M1S47_09845 PF04909 Amidohydrolase M1S47_09850 PF07690 Major Facilitator Superfamily M1S47_09865 PF04829 Pre-toxin domain with VENN motif M1S47_09865 PF13332 Hemagglutinin repeat M1S47_09865 PF05860 haemagglutination activity domain M1S47_09865 PF13018 Extended Signal Peptide of Type V secretion system M1S47_09870 PF08479 POTRA domain, ShlB-type M1S47_09870 PF17287 POTRA domain M1S47_09870 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB M1S47_09880 PF07687 Peptidase dimerisation domain M1S47_09880 PF01546 Peptidase family M20/M25/M40 M1S47_09890 PF00999 Sodium/hydrogen exchanger family M1S47_09890 PF02254 TrkA-N domain M1S47_09895 PF07995 Glucose / Sorbosone dehydrogenase M1S47_09900 PF03466 LysR substrate binding domain M1S47_09900 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M1S47_09905 PF00857 Isochorismatase family M1S47_09915 PF08359 YsiA-like protein, C-terminal region M1S47_09915 PF00440 Bacterial regulatory proteins, tetR family M1S47_09920 PF12706 Beta-lactamase superfamily domain M1S47_09930 PF07992 Pyridine nucleotide-disulphide oxidoreductase M1S47_09940 PF09278 MerR, DNA binding M1S47_09940 PF00376 MerR family regulatory protein M1S47_09945 PF01872 RibD C-terminal domain M1S47_09950 PF00106 short chain dehydrogenase M1S47_09955 PF00724 NADH:flavin oxidoreductase / NADH oxidase family M1S47_09955 PF07992 Pyridine nucleotide-disulphide oxidoreductase M1S47_09960 PF01047 MarR family M1S47_09965 PF07859 alpha/beta hydrolase fold M1S47_09980 PF00199 Catalase M1S47_09980 PF06628 Catalase-related immune-responsive M1S47_09985 PF00561 alpha/beta hydrolase fold M1S47_09995 PF00171 Aldehyde dehydrogenase family M1S47_10000 PF08240 Alcohol dehydrogenase GroES-like domain M1S47_10000 PF00107 Zinc-binding dehydrogenase M1S47_10005 PF00474 Sodium:solute symporter family M1S47_10010 PF04341 Protein of unknown function, DUF485 M1S47_10015 PF00501 AMP-binding enzyme M1S47_10015 PF13193 AMP-binding enzyme C-terminal domain M1S47_10020 PF00158 Sigma-54 interaction domain M1S47_10020 PF06506 Propionate catabolism activator M1S47_10020 PF02954 Bacterial regulatory protein, Fis family M1S47_10030 PF02770 Acyl-CoA dehydrogenase, middle domain M1S47_10030 PF02771 Acyl-CoA dehydrogenase, N-terminal domain M1S47_10030 PF00441 Acyl-CoA dehydrogenase, C-terminal domain M1S47_10050 PF00171 Aldehyde dehydrogenase family M1S47_10060 PF07690 Major Facilitator Superfamily M1S47_10065 PF00920 Dehydratase family M1S47_10070 PF07729 FCD domain M1S47_10070 PF00392 Bacterial regulatory proteins, gntR family M1S47_10080 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M1S47_10080 PF03466 LysR substrate binding domain M1S47_10085 PF13378 Enolase C-terminal domain-like M1S47_10085 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain M1S47_10090 PF02426 Muconolactone delta-isomerase M1S47_10095 PF00775 Dioxygenase M1S47_10095 PF04444 Catechol dioxygenase N terminus M1S47_10100 PF01144 Coenzyme A transferase M1S47_10105 PF01144 Coenzyme A transferase M1S47_10110 PF02803 Thiolase, C-terminal domain M1S47_10110 PF00108 Thiolase, N-terminal domain M1S47_10115 PF12146 Serine aminopeptidase, S33 M1S47_10120 PF01804 Penicillin amidase M1S47_10125 PF00171 Aldehyde dehydrogenase family M1S47_10135 PF01179 Copper amine oxidase, enzyme domain M1S47_10135 PF07833 Copper amine oxidase N-terminal domain M1S47_10135 PF02728 Copper amine oxidase, N3 domain M1S47_10135 PF02727 Copper amine oxidase, N2 domain M1S47_10140 PF12833 Helix-turn-helix domain M1S47_10140 PF02311 AraC-like ligand binding domain M1S47_10145 PF01613 Flavin reductase like domain M1S47_10150 PF00111 2Fe-2S iron-sulfur cluster binding domain M1S47_10150 PF00175 Oxidoreductase NAD-binding domain M1S47_10165 PF00355 Rieske [2Fe-2S] domain M1S47_10165 PF00848 Ring hydroxylating alpha subunit (catalytic domain) M1S47_10180 PF08028 Acyl-CoA dehydrogenase, C-terminal domain M1S47_10185 PF01425 Amidase M1S47_10195 PF07690 Major Facilitator Superfamily M1S47_10205 PF00106 short chain dehydrogenase M1S47_10220 PF00441 Acyl-CoA dehydrogenase, C-terminal domain M1S47_10220 PF02771 Acyl-CoA dehydrogenase, N-terminal domain M1S47_10220 PF02770 Acyl-CoA dehydrogenase, middle domain M1S47_10225 PF03466 LysR substrate binding domain M1S47_10225 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M1S47_10230 PF09339 IclR helix-turn-helix domain M1S47_10230 PF01614 Bacterial transcriptional regulator M1S47_10235 PF00753 Metallo-beta-lactamase superfamily M1S47_10245 PF04143 Sulphur transport M1S47_10260 PF04966 Carbohydrate-selective porin, OprB family M1S47_10265 PF05048 Periplasmic copper-binding protein (NosD) M1S47_10270 PF01487 Type I 3-dehydroquinase M1S47_10275 PF00775 Dioxygenase M1S47_10280 PF00775 Dioxygenase M1S47_10280 PF12391 Protocatechuate 3,4-dioxygenase beta subunit N terminal M1S47_10285 PF02627 Carboxymuconolactone decarboxylase family M1S47_10290 PF07690 Major Facilitator Superfamily M1S47_10295 PF00561 alpha/beta hydrolase fold M1S47_10300 PF10397 Adenylosuccinate lyase C-terminus M1S47_10300 PF00206 Lyase M1S47_10305 PF00108 Thiolase, N-terminal domain M1S47_10305 PF02803 Thiolase, C-terminal domain M1S47_10310 PF01144 Coenzyme A transferase M1S47_10315 PF01144 Coenzyme A transferase M1S47_10320 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase M1S47_10325 PF04977 Septum formation initiator M1S47_10330 PF04239 Protein of unknown function (DUF421) M1S47_10335 PF00113 Enolase, C-terminal TIM barrel domain M1S47_10335 PF03952 Enolase, N-terminal domain M1S47_10340 PF00793 DAHP synthetase I family M1S47_10345 PF06418 CTP synthase N-terminus M1S47_10345 PF00117 Glutamine amidotransferase class-I M1S47_10375 PF00724 NADH:flavin oxidoreductase / NADH oxidase family M1S47_10375 PF07992 Pyridine nucleotide-disulphide oxidoreductase M1S47_10390 PF00793 DAHP synthetase I family M1S47_10395 PF02694 Uncharacterised BCR, YnfA/UPF0060 family M1S47_10400 PF10431 C-terminal, D2-small domain, of ClpB protein M1S47_10400 PF00004 ATPase family associated with various cellular activities (AAA) M1S47_10400 PF07724 AAA domain (Cdc48 subfamily) M1S47_10400 PF17871 AAA lid domain M1S47_10400 PF02861 Clp amino terminal domain, pathogenicity island component M1S47_10405 PF02617 ATP-dependent Clp protease adaptor protein ClpS M1S47_10415 PF02774 Semialdehyde dehydrogenase, dimerisation domain M1S47_10415 PF01118 Semialdehyde dehydrogenase, NAD binding domain M1S47_10430 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) M1S47_10435 PF00585 C-terminal regulatory domain of Threonine dehydratase M1S47_10435 PF00291 Pyridoxal-phosphate dependent enzyme M1S47_10440 PF02080 TrkA-C domain M1S47_10440 PF02254 TrkA-N domain M1S47_10445 PF02386 Cation transport protein M1S47_10450 PF02253 Phospholipase A1 M1S47_10455 PF05193 Peptidase M16 inactive domain M1S47_10455 PF08367 Peptidase M16C associated M1S47_10455 PF00675 Insulinase (Peptidase family M16) M1S47_10460 PF00593 TonB dependent receptor M1S47_10460 PF07715 TonB-dependent Receptor Plug Domain M1S47_10465 PF00294 pfkB family carbohydrate kinase M1S47_10475 PF07290 Protein of unknown function (DUF1449) M1S47_10485 PF01654 Cytochrome bd terminal oxidase subunit I M1S47_10490 PF02322 Cytochrome bd terminal oxidase subunit II M1S47_10495 PF08173 Membrane bound YbgT-like protein M1S47_10510 PF09829 Uncharacterized protein conserved in bacteria (DUF2057) M1S47_10520 PF00448 SRP54-type protein, GTPase domain M1S47_10520 PF02881 SRP54-type protein, helical bundle domain M1S47_10545 PF00478 IMP dehydrogenase / GMP reductase domain M1S47_10545 PF00571 CBS domain M1S47_10550 PF00202 Aminotransferase class-III M1S47_10555 PF00462 Glutaredoxin M1S47_10565 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M1S47_10565 PF03466 LysR substrate binding domain M1S47_10570 PF00557 Metallopeptidase family M24 M1S47_10575 PF05525 Branched-chain amino acid transport protein M1S47_10600 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 M1S47_10600 PF00391 PEP-utilising enzyme, mobile domain M1S47_10600 PF05524 PEP-utilising enzyme, N-terminal M1S47_10600 PF02896 PEP-utilising enzyme, TIM barrel domain M1S47_10600 PF00381 PTS HPr component phosphorylation site M1S47_10605 PF00294 pfkB family carbohydrate kinase M1S47_10610 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit M1S47_10610 PF02378 Phosphotransferase system, EIIC M1S47_10630 PF00990 Diguanylate cyclase, GGDEF domain M1S47_10630 PF03707 Bacterial signalling protein N terminal repeat M1S47_10630 PF00563 EAL domain M1S47_10640 PF07995 Glucose / Sorbosone dehydrogenase M1S47_10645 PF02586 SOS response associated peptidase (SRAP) M1S47_10650 PF01740 STAS domain M1S47_10650 PF00916 Sulfate permease family M1S47_10655 PF05922 Peptidase inhibitor I9 M1S47_10655 PF00082 Subtilase family M1S47_10670 PF00324 Amino acid permease M1S47_10675 PF00266 Aminotransferase class-V M1S47_10680 PF01037 Lrp/AsnC ligand binding domain M1S47_10705 PF13419 Haloacid dehalogenase-like hydrolase M1S47_10710 PF01479 S4 domain M1S47_10715 PF00154 recA bacterial DNA recombination protein M1S47_10720 PF02631 RecX family M1S47_10735 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 M1S47_10735 PF00132 Bacterial transferase hexapeptide (six repeats) M1S47_10740 PF07977 FabA-like domain M1S47_10745 PF00132 Bacterial transferase hexapeptide (six repeats) M1S47_10745 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD M1S47_10755 PF01103 Surface antigen M1S47_10755 PF07244 Surface antigen variable number repeat M1S47_10760 PF17820 PDZ domain M1S47_10760 PF02163 Peptidase family M50 M1S47_10760 PF13180 PDZ domain M1S47_10765 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain M1S47_10765 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase M1S47_10765 PF13288 DXP reductoisomerase C-terminal domain M1S47_10775 PF01255 Putative undecaprenyl diphosphate synthase M1S47_10780 PF01765 Ribosome recycling factor M1S47_10785 PF00696 Amino acid kinase family M1S47_10790 PF00919 Uncharacterized protein family UPF0004 M1S47_10790 PF18693 TRAM domain M1S47_10790 PF04055 Radical SAM superfamily M1S47_10795 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M1S47_10795 PF00989 PAS fold M1S47_10795 PF00512 His Kinase A (phospho-acceptor) domain M1S47_10800 PF02954 Bacterial regulatory protein, Fis family M1S47_10800 PF00072 Response regulator receiver domain M1S47_10800 PF00158 Sigma-54 interaction domain M1S47_10820 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain M1S47_10820 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain M1S47_10830 PF02542 YgbB family M1S47_10840 PF01266 FAD dependent oxidoreductase M1S47_10860 PF10415 Fumarase C C-terminus M1S47_10860 PF00206 Lyase M1S47_10865 PF16363 GDP-mannose 4,6 dehydratase M1S47_10870 PF02635 DsrE/DsrF-like family M1S47_10890 PF00892 EamA-like transporter family M1S47_10895 PF00392 Bacterial regulatory proteins, gntR family M1S47_10895 PF00155 Aminotransferase class I and II M1S47_10900 PF01638 HxlR-like helix-turn-helix M1S47_10905 PF00994 Probable molybdopterin binding domain M1S47_10905 PF03454 MoeA C-terminal region (domain IV) M1S47_10905 PF03453 MoeA N-terminal region (domain I and II) M1S47_10910 PF00994 Probable molybdopterin binding domain M1S47_10910 PF01967 MoaC family M1S47_10915 PF02391 MoaE protein M1S47_10925 PF04055 Radical SAM superfamily M1S47_10925 PF06463 Molybdenum Cofactor Synthesis C M1S47_10930 PF04879 Molybdopterin oxidoreductase Fe4S4 domain M1S47_10930 PF00384 Molybdopterin oxidoreductase M1S47_10930 PF01568 Molydopterin dinucleotide binding domain M1S47_10935 PF12804 MobA-like NTP transferase domain M1S47_10940 PF01568 Molydopterin dinucleotide binding domain M1S47_10940 PF00384 Molybdopterin oxidoreductase M1S47_10940 PF04879 Molybdopterin oxidoreductase Fe4S4 domain M1S47_10940 PF04324 BFD-like [2Fe-2S] binding domain M1S47_10945 PF01077 Nitrite and sulphite reductase 4Fe-4S domain M1S47_10945 PF04324 BFD-like [2Fe-2S] binding domain M1S47_10945 PF07992 Pyridine nucleotide-disulphide oxidoreductase M1S47_10945 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain M1S47_10945 PF18267 Rubredoxin NAD+ reductase C-terminal domain M1S47_10960 PF00486 Transcriptional regulatory protein, C terminal M1S47_10960 PF00072 Response regulator receiver domain M1S47_10965 PF00005 ABC transporter M1S47_10975 PF11799 impB/mucB/samB family C-terminal domain M1S47_10975 PF00817 impB/mucB/samB family M1S47_10975 PF13438 Domain of unknown function (DUF4113) M1S47_10980 PF01220 Dehydroquinase class II M1S47_10985 PF00364 Biotin-requiring enzyme M1S47_10990 PF02785 Biotin carboxylase C-terminal domain M1S47_10990 PF00289 Biotin carboxylase, N-terminal domain M1S47_10990 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain M1S47_11000 PF12832 MFS_1 like family M1S47_11065 PF01476 LysM domain M1S47_11065 PF08525 Opacity-associated protein A N-terminal motif M1S47_11065 PF01551 Peptidase family M23 M1S47_11250 PF01555 DNA methylase M1S47_11280 PF12161 HsdM N-terminal domain M1S47_11280 PF02384 N-6 DNA Methylase M1S47_11350 PF01645 Conserved region in glutamate synthase M1S47_11365 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain M1S47_11365 PF01565 FAD binding domain M1S47_11370 PF01451 Low molecular weight phosphotyrosine protein phosphatase M1S47_11380 PF00465 Iron-containing alcohol dehydrogenase M1S47_11385 PF03061 Thioesterase superfamily M1S47_11390 PF05506 Domain of unknown function (DUF756) M1S47_11390 PF04185 Phosphoesterase family M1S47_11400 PF07690 Major Facilitator Superfamily M1S47_11410 PF00144 Beta-lactamase M1S47_11415 PF01575 MaoC like domain M1S47_11425 PF02803 Thiolase, C-terminal domain M1S47_11425 PF00108 Thiolase, N-terminal domain M1S47_11435 PF03466 LysR substrate binding domain M1S47_11435 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M1S47_11440 PF00923 Transaldolase/Fructose-6-phosphate aldolase M1S47_11445 PF01810 LysE type translocator M1S47_11450 PF01037 Lrp/AsnC ligand binding domain M1S47_11455 PF03594 Benzoate membrane transport protein M1S47_11460 PF02308 MgtC family M1S47_11465 PF00689 Cation transporting ATPase, C-terminus M1S47_11465 PF00690 Cation transporter/ATPase, N-terminus M1S47_11490 PF00582 Universal stress protein family M1S47_11495 PF00005 ABC transporter M1S47_11495 PF12848 ABC transporter M1S47_11515 PF00593 TonB dependent receptor M1S47_11515 PF07715 TonB-dependent Receptor Plug Domain M1S47_11550 PF00924 Mechanosensitive ion channel M1S47_11555 PF07715 TonB-dependent Receptor Plug Domain M1S47_11555 PF00593 TonB dependent receptor M1S47_11560 PF00440 Bacterial regulatory proteins, tetR family M1S47_11575 PF01037 Lrp/AsnC ligand binding domain M1S47_11580 PF01817 Chorismate mutase type II M1S47_11590 PF00106 short chain dehydrogenase M1S47_11600 PF11940 Domain of unknown function (DUF3458) Ig-like fold M1S47_11600 PF17432 Domain of unknown function (DUF3458_C) ARM repeats M1S47_11600 PF01433 Peptidase family M1 domain M1S47_11615 PF02110 Hydroxyethylthiazole kinase family M1S47_11620 PF06445 GyrI-like small molecule binding domain M1S47_11630 PF05970 PIF1-like helicase M1S47_11630 PF14493 Helix-turn-helix domain M1S47_11635 PF00465 Iron-containing alcohol dehydrogenase M1S47_11650 PF00171 Aldehyde dehydrogenase family M1S47_11655 PF13520 Amino acid permease M1S47_11660 PF06751 Ethanolamine ammonia lyase large subunit (EutB) M1S47_11665 PF05985 Ethanolamine ammonia-lyase light chain (EutC) M1S47_11670 PF00958 GMP synthase C terminal domain M1S47_11670 PF02540 NAD synthase M1S47_11670 PF00117 Glutamine amidotransferase class-I M1S47_11675 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain M1S47_11675 PF00749 tRNA synthetases class I (E and Q), catalytic domain M1S47_11680 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD M1S47_11685 PF00149 Calcineurin-like phosphoesterase M1S47_11695 PF00881 Nitroreductase family M1S47_11705 PF17209 Hfq protein M1S47_11715 PF01119 DNA mismatch repair protein, C-terminal domain M1S47_11715 PF08676 MutL C terminal dimerisation domain M1S47_11720 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE M1S47_11725 PF01479 S4 domain M1S47_11725 PF00849 RNA pseudouridylate synthase M1S47_11740 PF00849 RNA pseudouridylate synthase M1S47_11740 PF01479 S4 domain M1S47_11750 PF04284 Protein of unknown function (DUF441) M1S47_11755 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M1S47_11755 PF03466 LysR substrate binding domain M1S47_11770 PF07690 Major Facilitator Superfamily M1S47_11775 PF00520 Ion transport protein M1S47_11775 PF00027 Cyclic nucleotide-binding domain M1S47_11785 PF00330 Aconitase family (aconitate hydratase) M1S47_11785 PF11791 Aconitate B N-terminal domain M1S47_11785 PF06434 Aconitate hydratase 2 N-terminus M1S47_11800 PF01103 Surface antigen M1S47_11800 PF07244 Surface antigen variable number repeat M1S47_11800 PF17243 POTRA domain TamA domain 1 M1S47_11805 PF07690 Major Facilitator Superfamily M1S47_11810 PF03232 Ubiquinone biosynthesis protein COQ7 M1S47_11820 PF00120 Glutamine synthetase, catalytic domain M1S47_11825 PF00072 Response regulator receiver domain M1S47_11825 PF00486 Transcriptional regulatory protein, C terminal M1S47_11830 PF00512 His Kinase A (phospho-acceptor) domain M1S47_11830 PF13493 Domain of unknown function (DUF4118) M1S47_11830 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M1S47_11830 PF02702 Osmosensitive K+ channel His kinase sensor domain M1S47_11835 PF02669 K+-transporting ATPase, c chain M1S47_11845 PF03814 Potassium-transporting ATPase A subunit M1S47_11860 PF03109 ABC1 family M1S47_11865 PF00899 ThiF family M1S47_11870 PF01613 Flavin reductase like domain M1S47_11875 PF13193 AMP-binding enzyme C-terminal domain M1S47_11875 PF00501 AMP-binding enzyme M1S47_11890 PF12833 Helix-turn-helix domain M1S47_11895 PF09084 NMT1/THI5 like M1S47_11900 PF00528 Binding-protein-dependent transport system inner membrane component M1S47_11905 PF13847 Methyltransferase domain M1S47_11905 PF17827 PrmC N-terminal domain M1S47_11910 PF03462 PCRF domain M1S47_11910 PF00472 RF-1 domain M1S47_11920 PF03466 LysR substrate binding domain M1S47_11920 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M1S47_11935 PF00296 Luciferase-like monooxygenase M1S47_11945 PF13994 PgaD-like protein M1S47_11950 PF00535 Glycosyl transferase family 2 M1S47_11965 PF03618 Kinase/pyrophosphorylase M1S47_11970 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain M1S47_11970 PF00391 PEP-utilising enzyme, mobile domain M1S47_11970 PF02896 PEP-utilising enzyme, TIM barrel domain M1S47_11980 PF00116 Cytochrome C oxidase subunit II, periplasmic domain M1S47_11980 PF06481 COX Aromatic Rich Motif M1S47_11985 PF00115 Cytochrome C and Quinol oxidase polypeptide I M1S47_11990 PF00510 Cytochrome c oxidase subunit III M1S47_11995 PF03626 Prokaryotic Cytochrome C oxidase subunit IV M1S47_12000 PF01040 UbiA prenyltransferase family M1S47_12005 PF01250 Ribosomal protein S6 M1S47_12010 PF01084 Ribosomal protein S18 M1S47_12015 PF03948 Ribosomal protein L9, C-terminal domain M1S47_12015 PF01281 Ribosomal protein L9, N-terminal domain M1S47_12020 PF03796 DnaB-like helicase C terminal domain M1S47_12020 PF00772 DnaB-like helicase N terminal domain M1S47_12025 PF00842 Alanine racemase, C-terminal domain M1S47_12025 PF01168 Alanine racemase, N-terminal domain M1S47_12035 PF08379 Bacterial transglutaminase-like N-terminal region M1S47_12035 PF01841 Transglutaminase-like superfamily M1S47_12045 PF14403 Circularly permuted ATP-grasp type 2 M1S47_12055 PF01134 Glucose inhibited division protein A M1S47_12055 PF13932 GidA associated domain M1S47_12075 PF02954 Bacterial regulatory protein, Fis family M1S47_12080 PF01808 AICARFT/IMPCHase bienzyme M1S47_12080 PF02142 MGS-like domain M1S47_12085 PF02844 Phosphoribosylglycinamide synthetase, N domain M1S47_12085 PF02843 Phosphoribosylglycinamide synthetase, C domain M1S47_12085 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain M1S47_12090 PF03180 NLPA lipoprotein M1S47_12095 PF00005 ABC transporter M1S47_12095 PF09383 NIL domain M1S47_12100 PF00528 Binding-protein-dependent transport system inner membrane component M1S47_12105 PF16123 Hydroxyacylglutathione hydrolase C-terminus M1S47_12105 PF00753 Metallo-beta-lactamase superfamily M1S47_12115 PF00375 Sodium:dicarboxylate symporter family M1S47_12130 PF13610 DDE domain M1S47_12145 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain M1S47_12145 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain M1S47_12165 PF07690 Major Facilitator Superfamily M1S47_12180 PF03279 Bacterial lipid A biosynthesis acyltransferase M1S47_12185 PF00990 Diguanylate cyclase, GGDEF domain M1S47_12185 PF00563 EAL domain M1S47_12185 PF03707 Bacterial signalling protein N terminal repeat M1S47_12190 PF00892 EamA-like transporter family M1S47_12195 PF01037 Lrp/AsnC ligand binding domain M1S47_12200 PF01624 MutS domain I M1S47_12200 PF05190 MutS family domain IV M1S47_12200 PF05192 MutS domain III M1S47_12200 PF05188 MutS domain II M1S47_12200 PF00488 MutS domain V M1S47_12210 PF00037 4Fe-4S binding domain M1S47_12210 PF11953 Domain of unknown function (DUF3470) M1S47_12220 PF01596 O-methyltransferase M1S47_12230 PF00132 Bacterial transferase hexapeptide (six repeats) M1S47_12235 PF01205 Uncharacterized protein family UPF0029 M1S47_12245 PF03412 Peptidase C39 family M1S47_12245 PF00664 ABC transporter transmembrane region M1S47_12245 PF00005 ABC transporter M1S47_12250 PF02321 Outer membrane efflux protein M1S47_12255 PF00005 ABC transporter M1S47_12255 PF12399 Branched-chain amino acid ATP-binding cassette transporter M1S47_12260 PF03968 OstA-like protein M1S47_12275 PF01380 SIS domain M1S47_12275 PF00571 CBS domain M1S47_12280 PF01406 tRNA synthetases class I (C) catalytic domain M1S47_12280 PF09190 DALR domain M1S47_12305 PF01638 HxlR-like helix-turn-helix M1S47_12310 PF07690 Major Facilitator Superfamily M1S47_12335 PF14748 Pyrroline-5-carboxylate reductase dimerisation M1S47_12335 PF03807 NADP oxidoreductase coenzyme F420-dependent M1S47_12345 PF00313 'Cold-shock' DNA-binding domain M1S47_12350 PF01810 LysE type translocator M1S47_12380 PF13742 OB-fold nucleic acid binding domain M1S47_12380 PF02601 Exonuclease VII, large subunit M1S47_12415 PF09278 MerR, DNA binding M1S47_12415 PF00376 MerR family regulatory protein M1S47_12420 PF00403 Heavy-metal-associated domain M1S47_12425 PF00403 Heavy-metal-associated domain M1S47_12430 PF03466 LysR substrate binding domain M1S47_12430 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M1S47_12440 PF00848 Ring hydroxylating alpha subunit (catalytic domain) M1S47_12440 PF00355 Rieske [2Fe-2S] domain M1S47_12445 PF00866 Ring hydroxylating beta subunit M1S47_12450 PF00111 2Fe-2S iron-sulfur cluster binding domain M1S47_12450 PF00970 Oxidoreductase FAD-binding domain M1S47_12450 PF00175 Oxidoreductase NAD-binding domain M1S47_12455 PF00106 short chain dehydrogenase M1S47_12460 PF03594 Benzoate membrane transport protein M1S47_12465 PF07690 Major Facilitator Superfamily M1S47_12475 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III M1S47_12475 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal M1S47_12480 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold M1S47_12480 PF00270 DEAD/DEAH box helicase M1S47_12480 PF11898 Domain of unknown function (DUF3418) M1S47_12480 PF00271 Helicase conserved C-terminal domain M1S47_12480 PF04408 Helicase associated domain (HA2) M1S47_12485 PF10417 C-terminal domain of 1-Cys peroxiredoxin M1S47_12485 PF00578 AhpC/TSA family M1S47_12505 PF07992 Pyridine nucleotide-disulphide oxidoreductase M1S47_12505 PF13192 Thioredoxin domain M1S47_12515 PF00043 Glutathione S-transferase, C-terminal domain M1S47_12515 PF02798 Glutathione S-transferase, N-terminal domain M1S47_12525 PF02390 Putative methyltransferase M1S47_12530 PF00043 Glutathione S-transferase, C-terminal domain M1S47_12530 PF13417 Glutathione S-transferase, N-terminal domain M1S47_12540 PF13488 Glycine zipper M1S47_12540 PF00691 OmpA family M1S47_12545 PF01979 Amidohydrolase family M1S47_12550 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain M1S47_12550 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain M1S47_12560 PF10672 S-adenosylmethionine-dependent methyltransferase M1S47_12560 PF02926 THUMP domain M1S47_12560 PF01170 Putative RNA methylase family UPF0020 M1S47_12575 PF02861 Clp amino terminal domain, pathogenicity island component M1S47_12575 PF17871 AAA lid domain M1S47_12575 PF00004 ATPase family associated with various cellular activities (AAA) M1S47_12575 PF10431 C-terminal, D2-small domain, of ClpB protein M1S47_12575 PF07724 AAA domain (Cdc48 subfamily) M1S47_12590 PF02566 OsmC-like protein M1S47_12600 PF00027 Cyclic nucleotide-binding domain M1S47_12600 PF13545 Crp-like helix-turn-helix domain M1S47_12610 PF00248 Aldo/keto reductase family M1S47_12625 PF00709 Adenylosuccinate synthetase M1S47_12630 PF13393 Histidyl-tRNA synthetase M1S47_12635 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain M1S47_12635 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain M1S47_12640 PF02272 DHHA1 domain M1S47_12640 PF01411 tRNA synthetases class II (A) M1S47_12640 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain M1S47_12645 PF00696 Amino acid kinase family M1S47_12645 PF01842 ACT domain M1S47_12645 PF13840 ACT domain M1S47_12650 PF02599 Global regulator protein family M1S47_12655 PF01351 Ribonuclease HII M1S47_12665 PF01292 Prokaryotic cytochrome b561 M1S47_12670 PF00962 Adenosine/AMP deaminase M1S47_12675 PF00860 Permease family M1S47_12685 PF00743 Flavin-binding monooxygenase-like M1S47_12690 PF00106 short chain dehydrogenase M1S47_12700 PF17954 Quercetinase C-terminal cupin domain M1S47_12700 PF02678 Pirin M1S47_12705 PF17932 Tetracyclin repressor-like, C-terminal domain M1S47_12705 PF00440 Bacterial regulatory proteins, tetR family M1S47_12715 PF00106 short chain dehydrogenase M1S47_12725 PF13610 DDE domain M1S47_12735 PF02796 Helix-turn-helix domain of resolvase M1S47_12735 PF00239 Resolvase, N terminal domain M1S47_12740 PF11809 Domain of unknown function (DUF3330) M1S47_12740 PF00563 EAL domain M1S47_12750 PF13495 Phage integrase, N-terminal SAM-like domain M1S47_12750 PF00589 Phage integrase family M1S47_12755 PF00583 Acetyltransferase (GNAT) family M1S47_12775 PF00893 Small Multidrug Resistance protein M1S47_12780 PF00809 Pterin binding enzyme M1S47_12800 PF13610 DDE domain M1S47_12805 PF01636 Phosphotransferase enzyme family M1S47_12820 PF13610 DDE domain M1S47_12825 PF02796 Helix-turn-helix domain of resolvase M1S47_12825 PF00239 Resolvase, N terminal domain M1S47_12845 PF02796 Helix-turn-helix domain of resolvase M1S47_12845 PF00239 Resolvase, N terminal domain M1S47_12850 PF13610 DDE domain M1S47_12860 PF04958 Arginine N-succinyltransferase beta subunit M1S47_12865 PF00202 Aminotransferase class-III M1S47_12875 PF00171 Aldehyde dehydrogenase family M1S47_12885 PF07729 FCD domain M1S47_12885 PF00392 Bacterial regulatory proteins, gntR family M1S47_12895 PF00324 Amino acid permease M1S47_12900 PF01266 FAD dependent oxidoreductase M1S47_12905 PF00324 Amino acid permease M1S47_12945 PF05593 RHS Repeat M1S47_12945 PF03527 RHS protein M1S47_12950 PF13296 Putative type VI secretion system Rhs element Vgr M1S47_12950 PF04717 Type VI secretion system, phage-baseplate injector M1S47_12950 PF10106 Uncharacterized protein conserved in bacteria (DUF2345) M1S47_12970 PF03180 NLPA lipoprotein M1S47_12975 PF05987 Bacterial protein of unknown function (DUF898) M1S47_12990 PF00724 NADH:flavin oxidoreductase / NADH oxidase family M1S47_12990 PF07992 Pyridine nucleotide-disulphide oxidoreductase M1S47_12995 PF00764 Arginosuccinate synthase M1S47_13000 PF00563 EAL domain M1S47_13000 PF01590 GAF domain M1S47_13000 PF00990 Diguanylate cyclase, GGDEF domain M1S47_13000 PF00360 Phytochrome region M1S47_13005 PF01979 Amidohydrolase family M1S47_13010 PF00929 Exonuclease M1S47_13020 PF00593 TonB dependent receptor M1S47_13020 PF07715 TonB-dependent Receptor Plug Domain M1S47_13025 PF07992 Pyridine nucleotide-disulphide oxidoreductase M1S47_13025 PF00724 NADH:flavin oxidoreductase / NADH oxidase family M1S47_13030 PF08352 Oligopeptide/dipeptide transporter, C-terminal region M1S47_13030 PF00005 ABC transporter M1S47_13035 PF12911 N-terminal TM domain of oligopeptide transport permease C M1S47_13035 PF00528 Binding-protein-dependent transport system inner membrane component M1S47_13040 PF00528 Binding-protein-dependent transport system inner membrane component M1S47_13045 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle M1S47_13050 PF01476 LysM domain M1S47_13050 PF01464 Transglycosylase SLT domain M1S47_13050 PF01476 LysM domain M1S47_13050 PF01464 Transglycosylase SLT domain M1S47_13055 PF00929 Exonuclease M1S47_13065 PF00293 NUDIX domain M1S47_13065 PF09297 NADH pyrophosphatase zinc ribbon domain M1S47_13075 PF04972 BON domain M1S47_13080 PF02021 Uncharacterised protein family UPF0102 M1S47_13085 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases M1S47_13095 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M1S47_13095 PF03466 LysR substrate binding domain M1S47_13100 PF01810 LysE type translocator M1S47_13110 PF13411 MerR HTH family regulatory protein M1S47_13120 PF01494 FAD binding domain M1S47_13125 PF01494 FAD binding domain M1S47_13130 PF05195 Aminopeptidase P, N-terminal domain M1S47_13130 PF00557 Metallopeptidase family M24 M1S47_13215 PF01464 Transglycosylase SLT domain M1S47_13215 PF01551 Peptidase family M23 M1S47_13215 PF10145 Phage-related minor tail protein M1S47_13275 PF04860 Phage portal protein M1S47_13375 PF03796 DnaB-like helicase C terminal domain M1S47_13375 PF00772 DnaB-like helicase N terminal domain M1S47_13390 PF00717 Peptidase S24-like M1S47_13390 PF01726 LexA DNA binding domain M1S47_13445 PF08019 Phosphoethanolamine transferase EptA/EptB M1S47_13445 PF00884 Sulfatase M1S47_13815 PF01812 5-formyltetrahydrofolate cyclo-ligase family M1S47_13820 PF04355 SmpA / OmlA family M1S47_13820 PF00691 OmpA family M1S47_13825 PF03895 YadA-like membrane anchor domain M1S47_13825 PF05662 Coiled stalk of trimeric autotransporter adhesin M1S47_13825 PF05658 Head domain of trimeric autotransporter adhesin M1S47_13825 PF13018 Extended Signal Peptide of Type V secretion system M1S47_13830 PF05362 Lon protease (S16) C-terminal proteolytic domain M1S47_13830 PF00004 ATPase family associated with various cellular activities (AAA) M1S47_13830 PF02190 ATP-dependent protease La (LON) substrate-binding domain M1S47_13835 PF02590 Predicted SPOUT methyltransferase M1S47_13840 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase M1S47_13850 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase M1S47_13850 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain M1S47_13855 PF04060 Putative Fe-S cluster M1S47_13860 PF10576 Iron-sulfur binding domain of endonuclease III M1S47_13860 PF00633 Helix-hairpin-helix motif M1S47_13860 PF00730 HhH-GPD superfamily base excision DNA repair protein M1S47_13870 PF05191 Adenylate kinase, active site lid M1S47_13885 PF00905 Penicillin binding protein transpeptidase domain M1S47_13885 PF03717 Penicillin-binding Protein dimerisation domain M1S47_13900 PF02492 CobW/HypB/UreG, nucleotide-binding domain M1S47_13905 PF01730 UreF M1S47_13910 PF05194 UreE urease accessory protein, C-terminal domain M1S47_13910 PF02814 UreE urease accessory protein, N-terminal domain M1S47_13920 PF00699 Urease beta subunit M1S47_13925 PF00547 Urease, gamma subunit M1S47_13930 PF01774 UreD urease accessory protein M1S47_13945 PF00463 Isocitrate lyase family M1S47_13950 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M1S47_13950 PF03466 LysR substrate binding domain M1S47_13955 PF03471 Transporter associated domain M1S47_13955 PF00571 CBS domain M1S47_13955 PF01595 Cyclin M transmembrane N-terminal domain M1S47_13960 PF03600 Citrate transporter M1S47_13975 PF00009 Elongation factor Tu GTP binding domain M1S47_13980 PF01507 Phosphoadenosine phosphosulfate reductase family M1S47_13990 PF14052 Capsule assembly protein Wzi M1S47_13995 PF01336 OB-fold nucleic acid binding domain M1S47_13995 PF00152 tRNA synthetases class II (D, K and N) M1S47_14010 PF00301 Rubredoxin M1S47_14015 PF18113 Rubredoxin binding C-terminal domain M1S47_14015 PF07992 Pyridine nucleotide-disulphide oxidoreductase M1S47_14020 PF00561 alpha/beta hydrolase fold M1S47_14025 PF03466 LysR substrate binding domain M1S47_14025 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M1S47_14035 PF02503 Polyphosphate kinase middle domain M1S47_14035 PF13090 Polyphosphate kinase C-terminal domain 2 M1S47_14035 PF17941 Polyphosphate kinase C-terminal domain 1 M1S47_14035 PF13089 Polyphosphate kinase N-terminal domain M1S47_14040 PF00912 Transglycosylase M1S47_14045 PF01694 Rhomboid family M1S47_14055 PF00005 ABC transporter M1S47_14060 PF13472 GDSL-like Lipase/Acylhydrolase family M1S47_14065 PF00484 Carbonic anhydrase M1S47_14070 PF00561 alpha/beta hydrolase fold M1S47_14080 PF00593 TonB dependent receptor M1S47_14080 PF07715 TonB-dependent Receptor Plug Domain M1S47_14085 PF01521 Iron-sulphur cluster biosynthesis M1S47_14085 PF01106 NifU-like domain M1S47_14095 PF00884 Sulfatase M1S47_14100 PF03781 Sulfatase-modifying factor enzyme 1 M1S47_14115 PF00291 Pyridoxal-phosphate dependent enzyme M1S47_14120 PF01384 Phosphate transporter family M1S47_14125 PF02607 B12 binding domain M1S47_14125 PF02965 Vitamin B12 dependent methionine synthase, activation domain M1S47_14125 PF02574 Homocysteine S-methyltransferase M1S47_14125 PF02310 B12 binding domain M1S47_14125 PF00809 Pterin binding enzyme M1S47_14130 PF02779 Transketolase, pyrimidine binding domain M1S47_14130 PF02780 Transketolase, C-terminal domain M1S47_14135 PF00456 Transketolase, thiamine diphosphate binding domain M1S47_14140 PF07690 Major Facilitator Superfamily M1S47_14150 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M1S47_14150 PF03466 LysR substrate binding domain M1S47_14160 PF01263 Aldose 1-epimerase M1S47_14165 PF07690 Major Facilitator Superfamily M1S47_14170 PF02311 AraC-like ligand binding domain M1S47_14170 PF12833 Helix-turn-helix domain M1S47_14175 PF04960 Glutaminase M1S47_14180 PF01327 Polypeptide deformylase M1S47_14185 PF07690 Major Facilitator Superfamily M1S47_14195 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain M1S47_14195 PF00205 Thiamine pyrophosphate enzyme, central domain M1S47_14195 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain M1S47_14200 PF00171 Aldehyde dehydrogenase family M1S47_14205 PF01958 Domain of unknown function DUF108 M1S47_14205 PF03447 Homoserine dehydrogenase, NAD binding domain M1S47_14215 PF12697 Alpha/beta hydrolase family M1S47_14225 PF07690 Major Facilitator Superfamily M1S47_14230 PF07992 Pyridine nucleotide-disulphide oxidoreductase M1S47_14230 PF14759 Reductase C-terminal M1S47_14235 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily M1S47_14245 PF00355 Rieske [2Fe-2S] domain M1S47_14255 PF00355 Rieske [2Fe-2S] domain M1S47_14260 PF09339 IclR helix-turn-helix domain M1S47_14260 PF01614 Bacterial transcriptional regulator M1S47_14275 PF00378 Enoyl-CoA hydratase/isomerase M1S47_14285 PF00535 Glycosyl transferase family 2 M1S47_14290 PF14883 Hypothetical glycosyl hydrolase family 13 M1S47_14290 PF01522 Polysaccharide deacetylase M1S47_14295 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase M1S47_14300 PF07152 YaeQ protein M1S47_14305 PF00375 Sodium:dicarboxylate symporter family M1S47_14310 PF02492 CobW/HypB/UreG, nucleotide-binding domain M1S47_14310 PF07683 Cobalamin synthesis protein cobW C-terminal domain M1S47_14320 PF03061 Thioesterase superfamily M1S47_14330 PF02028 BCCT, betaine/carnitine/choline family transporter M1S47_14335 PF02028 BCCT, betaine/carnitine/choline family transporter M1S47_14340 PF13977 BetI-type transcriptional repressor, C-terminal M1S47_14340 PF00440 Bacterial regulatory proteins, tetR family M1S47_14345 PF00171 Aldehyde dehydrogenase family M1S47_14350 PF05199 GMC oxidoreductase M1S47_14350 PF00732 GMC oxidoreductase M1S47_14355 PF06039 Malate:quinone oxidoreductase (Mqo) M1S47_14365 PF02574 Homocysteine S-methyltransferase M1S47_14370 PF13520 Amino acid permease M1S47_14395 PF01126 Heme oxygenase M1S47_14405 PF04575 Protein of unknown function (DUF560) M1S47_14415 PF00593 TonB dependent receptor M1S47_14415 PF07715 TonB-dependent Receptor Plug Domain M1S47_14425 PF04542 Sigma-70 region 2 M1S47_14425 PF08281 Sigma-70, region 4 M1S47_14435 PF00701 Dihydrodipicolinate synthetase family M1S47_14440 PF00083 Sugar (and other) transporter M1S47_14460 PF01026 TatD related DNase M1S47_14475 PF07693 KAP family P-loop domain M1S47_14570 PF00712 DNA polymerase III beta subunit, N-terminal domain M1S47_14570 PF02767 DNA polymerase III beta subunit, central domain M1S47_14570 PF02768 DNA polymerase III beta subunit, C-terminal domain M1S47_14610 PF05016 ParE toxin of type II toxin-antitoxin system, parDE M1S47_14760 PF07007 Lysozyme inhibitor LprI M1S47_14805 PF01695 IstB-like ATP binding protein M1S47_14815 PF00145 C-5 cytosine-specific DNA methylase M1S47_14860 PF01381 Helix-turn-helix M1S47_14860 PF00717 Peptidase S24-like M1S47_14895 PF00929 Exonuclease M1S47_14970 PF00436 Single-strand binding protein family M1S47_15025 PF13356 Arm DNA-binding domain M1S47_15025 PF00589 Phage integrase family M1S47_15040 PF07690 Major Facilitator Superfamily M1S47_15045 PF13533 Biotin-lipoyl like M1S47_15050 PF03061 Thioesterase superfamily M1S47_15055 PF00490 Delta-aminolevulinic acid dehydratase M1S47_15060 PF01266 FAD dependent oxidoreductase M1S47_15065 PF08338 Domain of unknown function (DUF1731) M1S47_15065 PF01370 NAD dependent epimerase/dehydratase family M1S47_15085 PF00149 Calcineurin-like phosphoesterase M1S47_15085 PF12320 Type 5 capsule protein repressor C-terminal domain M1S47_15110 PF07690 Major Facilitator Superfamily M1S47_15115 PF13533 Biotin-lipoyl like M1S47_15120 PF03061 Thioesterase superfamily M1S47_15125 PF00490 Delta-aminolevulinic acid dehydratase M1S47_15135 PF08338 Domain of unknown function (DUF1731) M1S47_15135 PF01370 NAD dependent epimerase/dehydratase family M1S47_15155 PF12320 Type 5 capsule protein repressor C-terminal domain M1S47_15155 PF00149 Calcineurin-like phosphoesterase M1S47_15165 PF01168 Alanine racemase, N-terminal domain M1S47_15170 PF00437 Type II/IV secretion system protein M1S47_15175 PF00437 Type II/IV secretion system protein M1S47_15180 PF01475 Ferric uptake regulator family M1S47_15185 PF04355 SmpA / OmlA family M1S47_15190 PF03658 RnfH family Ubiquitin M1S47_15200 PF01814 Hemerythrin HHE cation binding domain M1S47_15205 PF13230 Glutamine amidotransferases class-II M1S47_15215 PF00696 Amino acid kinase family M1S47_15220 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III M1S47_15220 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I M1S47_15220 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II M1S47_15220 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain M1S47_15225 PF00692 dUTPase M1S47_15230 PF00580 UvrD/REP helicase N-terminal domain M1S47_15230 PF13361 UvrD-like helicase C-terminal domain M1S47_15235 PF13488 Glycine zipper M1S47_15235 PF00691 OmpA family M1S47_15240 PF01553 Acyltransferase M1S47_15250 PF03775 Septum formation inhibitor MinC, C-terminal domain M1S47_15255 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain M1S47_15260 PF03776 Septum formation topological specificity factor MinE M1S47_15275 PF01810 LysE type translocator M1S47_15280 PF13491 4TM region of DNA translocase FtsK/SpoIIIE M1S47_15280 PF17854 FtsK alpha domain M1S47_15280 PF09397 Ftsk gamma domain M1S47_15280 PF01580 FtsK/SpoIIIE family M1S47_15285 PF07992 Pyridine nucleotide-disulphide oxidoreductase M1S47_15290 PF03588 Leucyl/phenylalanyl-tRNA protein transferase M1S47_15295 PF04377 Arginine-tRNA-protein transferase, C terminus M1S47_15295 PF04376 Arginine-tRNA-protein transferase, N terminus M1S47_15300 PF00583 Acetyltransferase (GNAT) family M1S47_15315 PF03143 Elongation factor Tu C-terminal domain M1S47_15315 PF03144 Elongation factor Tu domain 2 M1S47_15315 PF00009 Elongation factor Tu GTP binding domain M1S47_15320 PF00679 Elongation factor G C-terminus M1S47_15320 PF14492 Elongation Factor G, domain II M1S47_15320 PF03764 Elongation factor G, domain IV M1S47_15320 PF00009 Elongation factor Tu GTP binding domain M1S47_15320 PF03144 Elongation factor Tu domain 2 M1S47_15325 PF00177 Ribosomal protein S7p/S5e M1S47_15330 PF00164 Ribosomal protein S12/S23 M1S47_15340 PF00109 Beta-ketoacyl synthase, N-terminal domain M1S47_15340 PF02801 Beta-ketoacyl synthase, C-terminal domain M1S47_15345 PF03653 Uncharacterised protein family (UPF0093) M1S47_15350 PF02678 Pirin M1S47_15350 PF05726 Pirin C-terminal cupin domain M1S47_15360 PF02540 NAD synthase M1S47_15360 PF00795 Carbon-nitrogen hydrolase M1S47_15375 PF00111 2Fe-2S iron-sulfur cluster binding domain M1S47_15375 PF00175 Oxidoreductase NAD-binding domain M1S47_15375 PF00970 Oxidoreductase FAD-binding domain M1S47_15380 PF00171 Aldehyde dehydrogenase family M1S47_15385 PF00355 Rieske [2Fe-2S] domain M1S47_15385 PF00848 Ring hydroxylating alpha subunit (catalytic domain) M1S47_15390 PF07859 alpha/beta hydrolase fold M1S47_15395 PF02028 BCCT, betaine/carnitine/choline family transporter M1S47_15400 PF00180 Isocitrate/isopropylmalate dehydrogenase M1S47_15405 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M1S47_15405 PF03466 LysR substrate binding domain M1S47_15425 PF00037 4Fe-4S binding domain M1S47_15430 PF01467 Cytidylyltransferase-like M1S47_15435 PF01668 SmpB protein M1S47_15440 PF03358 NADPH-dependent FMN reductase M1S47_15445 PF02578 Multi-copper polyphenol oxidoreductase laccase M1S47_15450 PF00849 RNA pseudouridylate synthase M1S47_15450 PF01479 S4 domain M1S47_15455 PF13525 Outer membrane lipoprotein M1S47_15460 PF01807 CHC2 zinc finger M1S47_15460 PF08275 DNA primase catalytic core, N-terminal domain M1S47_15460 PF08278 DNA primase DnaG DnaB-binding M1S47_15460 PF10410 DnaB-helicase binding domain of primase M1S47_15465 PF01488 Shikimate / quinate 5-dehydrogenase M1S47_15465 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain M1S47_15465 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain M1S47_15475 PF03550 Outer membrane lipoprotein LolB M1S47_15480 PF00288 GHMP kinases N terminal domain M1S47_15480 PF08544 GHMP kinases C terminal M1S47_15490 PF14572 Phosphoribosyl synthetase-associated domain M1S47_15490 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase M1S47_15495 PF01386 Ribosomal L25p family M1S47_15500 PF01195 Peptidyl-tRNA hydrolase M1S47_15505 PF02261 Aspartate decarboxylase M1S47_15520 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase M1S47_15530 PF08543 Phosphomethylpyrimidine kinase M1S47_15530 PF03070 TENA/THI-4/PQQC family M1S47_15530 PF02581 Thiamine monophosphate synthase M1S47_15535 PF01476 LysM domain M1S47_15535 PF04972 BON domain M1S47_15540 PF00550 Phosphopantetheine attachment site M1S47_15550 PF00698 Acyl transferase domain M1S47_15555 PF01783 Ribosomal L32p protein family M1S47_15560 PF02620 Large ribosomal RNA subunit accumulation protein YceD M1S47_15565 PF04315 Elongation factor P hydroxylase M1S47_15570 PF01300 Telomere recombination M1S47_15575 PF02616 Segregation and condensation protein ScpA M1S47_15580 PF04079 Segregation and condensation complex subunit ScpB M1S47_15585 PF01479 S4 domain M1S47_15585 PF00849 RNA pseudouridylate synthase M1S47_15600 PF00155 Aminotransferase class I and II M1S47_15605 PF00202 Aminotransferase class-III M1S47_15605 PF06968 Biotin and Thiamin Synthesis associated domain M1S47_15605 PF04055 Radical SAM superfamily M1S47_15610 PF12697 Alpha/beta hydrolase family M1S47_15610 PF08241 Methyltransferase domain M1S47_15615 PF02358 Trehalose-phosphatase M1S47_15620 PF00982 Glycosyltransferase family 20 M1S47_15625 PF07690 Major Facilitator Superfamily M1S47_15630 PF00210 Ferritin-like domain M1S47_15635 PF12826 Helix-hairpin-helix motif M1S47_15635 PF03119 NAD-dependent DNA ligase C4 zinc finger domain M1S47_15635 PF01653 NAD-dependent DNA ligase adenylation domain M1S47_15635 PF00533 BRCA1 C Terminus (BRCT) domain M1S47_15635 PF03120 NAD-dependent DNA ligase OB-fold domain M1S47_15645 PF06470 SMC proteins Flexible Hinge Domain M1S47_15645 PF02463 RecF/RecN/SMC N terminal domain M1S47_15655 PF01925 Sulfite exporter TauE/SafE M1S47_15665 PF03309 Type III pantothenate kinase M1S47_15670 PF00448 SRP54-type protein, GTPase domain M1S47_15670 PF02881 SRP54-type protein, helical bundle domain M1S47_15670 PF02978 Signal peptide binding domain M1S47_15680 PF01207 Dihydrouridine synthase (Dus) M1S47_15720 PF00692 dUTPase M1S47_15735 PF01048 Phosphorylase superfamily M1S47_15740 PF10609 NUBPL iron-transfer P-loop NTPase M1S47_15750 PF09334 tRNA synthetases class I (M) M1S47_15750 PF01588 Putative tRNA binding domain M1S47_15775 PF13533 Biotin-lipoyl like M1S47_15780 PF00291 Pyridoxal-phosphate dependent enzyme M1S47_15795 PF05552 Conserved TM helix M1S47_15810 PF00970 Oxidoreductase FAD-binding domain M1S47_15810 PF00175 Oxidoreductase NAD-binding domain M1S47_15815 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M1S47_15815 PF03466 LysR substrate binding domain M1S47_15820 PF00313 'Cold-shock' DNA-binding domain M1S47_15830 PF00361 Proton-conducting membrane transporter M1S47_15835 PF00361 Proton-conducting membrane transporter M1S47_15840 PF00361 Proton-conducting membrane transporter M1S47_15840 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus M1S47_15845 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L M1S47_15850 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 M1S47_15855 PF12838 4Fe-4S dicluster domain M1S47_15860 PF00146 NADH dehydrogenase M1S47_15865 PF00384 Molybdopterin oxidoreductase M1S47_15865 PF04879 Molybdopterin oxidoreductase Fe4S4 domain M1S47_15865 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region M1S47_15870 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit M1S47_15870 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region M1S47_15870 PF10531 SLBB domain M1S47_15880 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit M1S47_15880 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit M1S47_15885 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit M1S47_15890 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 M1S47_15895 PF00990 Diguanylate cyclase, GGDEF domain M1S47_15895 PF17151 Periplasmic sensor domain M1S47_15905 PF00672 HAMP domain M1S47_15905 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M1S47_15905 PF00512 His Kinase A (phospho-acceptor) domain M1S47_15910 PF00072 Response regulator receiver domain M1S47_15910 PF00486 Transcriptional regulatory protein, C terminal M1S47_15920 PF03477 ATP cone domain M1S47_15920 PF00317 Ribonucleotide reductase, all-alpha domain M1S47_15920 PF02867 Ribonucleotide reductase, barrel domain M1S47_15930 PF00268 Ribonucleotide reductase, small chain M1S47_15940 PF00672 HAMP domain M1S47_15940 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M1S47_15940 PF00512 His Kinase A (phospho-acceptor) domain M1S47_15940 PF13755 Sensor N-terminal transmembrane domain M1S47_15940 PF13756 Stimulus-sensing domain M1S47_16010 PF13360 PQQ-like domain M1S47_16010 PF01011 PQQ enzyme repeat M1S47_16035 PF02567 Phenazine biosynthesis-like protein M1S47_16060 PF01613 Flavin reductase like domain M1S47_16065 PF08267 Cobalamin-independent synthase, N-terminal domain M1S47_16065 PF01717 Cobalamin-independent synthase, Catalytic domain M1S47_16075 PF03466 LysR substrate binding domain M1S47_16075 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M1S47_16080 PF01810 LysE type translocator M1S47_16090 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term M1S47_16090 PF12833 Helix-turn-helix domain M1S47_16095 PF07687 Peptidase dimerisation domain M1S47_16095 PF01546 Peptidase family M20/M25/M40 M1S47_16105 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M1S47_16105 PF03466 LysR substrate binding domain M1S47_16110 PF07690 Major Facilitator Superfamily M1S47_16120 PF03466 LysR substrate binding domain M1S47_16120 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M1S47_16125 PF00890 FAD binding domain M1S47_16125 PF14537 Cytochrome c3 M1S47_16135 PF02515 CoA-transferase family III M1S47_16140 PF07690 Major Facilitator Superfamily M1S47_16145 PF02771 Acyl-CoA dehydrogenase, N-terminal domain M1S47_16145 PF00441 Acyl-CoA dehydrogenase, C-terminal domain M1S47_16145 PF02770 Acyl-CoA dehydrogenase, middle domain M1S47_16150 PF03466 LysR substrate binding domain M1S47_16150 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M1S47_16155 PF08240 Alcohol dehydrogenase GroES-like domain M1S47_16155 PF00107 Zinc-binding dehydrogenase M1S47_16160 PF00962 Adenosine/AMP deaminase M1S47_16185 PF02445 Quinolinate synthetase A protein M1S47_16190 PF01960 ArgJ family M1S47_16195 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain M1S47_16195 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain M1S47_16200 PF00893 Small Multidrug Resistance protein M1S47_16210 PF05275 Copper resistance protein B precursor (CopB) M1S47_16215 PF07732 Multicopper oxidase M1S47_16215 PF07731 Multicopper oxidase M1S47_16215 PF00394 Multicopper oxidase M1S47_16230 PF00834 Ribulose-phosphate 3 epimerase family M1S47_16240 PF00756 Putative esterase M1S47_16250 PF04445 Putative SAM-dependent methyltransferase M1S47_16255 PF00814 Glycoprotease family M1S47_16260 PF00132 Bacterial transferase hexapeptide (six repeats) M1S47_16265 PF00293 NUDIX domain M1S47_16305 PF00425 chorismate binding enzyme M1S47_16305 PF04715 Anthranilate synthase component I, N terminal region M1S47_16310 PF00155 Aminotransferase class I and II M1S47_16315 PF00815 Histidinol dehydrogenase M1S47_16320 PF01634 ATP phosphoribosyltransferase M1S47_16325 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) M1S47_16330 PF01722 BolA-like protein M1S47_16335 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein M1S47_16340 PF04552 Sigma-54, DNA binding domain M1S47_16340 PF04963 Sigma-54 factor, core binding domain M1S47_16340 PF00309 Sigma-54 factor, Activator interacting domain (AID) M1S47_16385 PF00795 Carbon-nitrogen hydrolase M1S47_16395 PF01047 MarR family M1S47_16400 PF02566 OsmC-like protein M1S47_16405 PF00437 Type II/IV secretion system protein M1S47_16425 PF01367 5'-3' exonuclease, C-terminal SAM fold M1S47_16425 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain M1S47_16425 PF00476 DNA polymerase family A M1S47_16425 PF01612 3'-5' exonuclease M1S47_16430 PF02325 YGGT family M1S47_16435 PF03807 NADP oxidoreductase coenzyme F420-dependent M1S47_16435 PF14748 Pyrroline-5-carboxylate reductase dimerisation M1S47_16440 PF01171 PP-loop family M1S47_16440 PF11734 TilS substrate C-terminal domain M1S47_16440 PF09179 TilS substrate binding domain M1S47_16445 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit M1S47_16450 PF02541 Ppx/GppA phosphatase family M1S47_16455 PF00085 Thioredoxin M1S47_16460 PF07497 Rho termination factor, RNA-binding domain M1S47_16460 PF07498 Rho termination factor, N-terminal domain M1S47_16460 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain M1S47_16475 PF00216 Bacterial DNA-binding protein M1S47_16480 PF03484 tRNA synthetase B5 domain M1S47_16480 PF03483 B3/4 domain M1S47_16480 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain M1S47_16480 PF01588 Putative tRNA binding domain M1S47_16480 PF03147 Ferredoxin-fold anticodon binding domain M1S47_16505 PF00453 Ribosomal protein L20 M1S47_16510 PF01632 Ribosomal protein L35 M1S47_16520 PF07690 Major Facilitator Superfamily M1S47_16525 PF09335 SNARE associated Golgi protein M1S47_16530 PF00043 Glutathione S-transferase, C-terminal domain M1S47_16530 PF02798 Glutathione S-transferase, N-terminal domain M1S47_16535 PF00707 Translation initiation factor IF-3, C-terminal domain M1S47_16535 PF05198 Translation initiation factor IF-3, N-terminal domain M1S47_16540 PF03129 Anticodon binding domain M1S47_16540 PF02824 TGS domain M1S47_16540 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) M1S47_16540 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain M1S47_16545 PF13193 AMP-binding enzyme C-terminal domain M1S47_16545 PF00501 AMP-binding enzyme M1S47_16550 PF04751 Protein of unknown function (DUF615) M1S47_16555 PF00381 PTS HPr component phosphorylation site M1S47_16560 PF03668 P-loop ATPase protein family M1S47_16565 PF02569 Pantoate-beta-alanine ligase M1S47_16570 PF02548 Ketopantoate hydroxymethyltransferase M1S47_16575 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) M1S47_16580 PF01743 Poly A polymerase head domain M1S47_16580 PF12626 Polymerase A arginine-rich C-terminus M1S47_16580 PF12627 Probable RNA and SrmB- binding site of polymerase A M1S47_16590 PF03819 MazG nucleotide pyrophosphohydrolase domain M1S47_16600 PF13291 ACT domain M1S47_16600 PF04607 Region found in RelA / SpoT proteins M1S47_16600 PF02824 TGS domain M1S47_16605 PF05958 tRNA (Uracil-5-)-methyltransferase M1S47_16615 PF00291 Pyridoxal-phosphate dependent enzyme M1S47_16620 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) M1S47_16620 PF01627 Hpt domain M1S47_16620 PF00512 His Kinase A (phospho-acceptor) domain M1S47_16620 PF00072 Response regulator receiver domain M1S47_16620 PF00672 HAMP domain M1S47_16620 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M1S47_16625 PF00378 Enoyl-CoA hydratase/isomerase M1S47_16630 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase M1S47_16630 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase M1S47_16635 PF01261 Xylose isomerase-like TIM barrel M1S47_16645 PF00106 short chain dehydrogenase M1S47_16650 PF02233 NAD(P) transhydrogenase beta subunit M1S47_16655 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch M1S47_16660 PF01262 Alanine dehydrogenase/PNT, C-terminal domain M1S47_16660 PF05222 Alanine dehydrogenase/PNT, N-terminal domain M1S47_16665 PF00892 EamA-like transporter family M1S47_16675 PF07690 Major Facilitator Superfamily M1S47_16680 PF01207 Dihydrouridine synthase (Dus) M1S47_16690 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M1S47_16690 PF03466 LysR substrate binding domain M1S47_16700 PF00899 ThiF family M1S47_16710 PF00694 Aconitase C-terminal domain M1S47_16710 PF00330 Aconitase family (aconitate hydratase) M1S47_16715 PF01026 TatD related DNase M1S47_16730 PF00009 Elongation factor Tu GTP binding domain M1S47_16730 PF16658 Class II release factor RF3, C-terminal domain M1S47_16730 PF03144 Elongation factor Tu domain 2 M1S47_16750 PF03707 Bacterial signalling protein N terminal repeat M1S47_16750 PF00990 Diguanylate cyclase, GGDEF domain M1S47_16750 PF00563 EAL domain M1S47_16755 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain M1S47_16755 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain M1S47_16760 PF10369 Small subunit of acetolactate synthase M1S47_16765 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain M1S47_16765 PF00205 Thiamine pyrophosphate enzyme, central domain M1S47_16765 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain M1S47_16775 PF08264 Anticodon-binding domain of tRNA M1S47_16775 PF00133 tRNA synthetases class I (I, L, M and V) M1S47_16775 PF13603 Leucyl-tRNA synthetase, Domain 2 M1S47_16775 PF09334 tRNA synthetases class I (M) M1S47_16790 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion M1S47_16795 PF12704 MacB-like periplasmic core domain M1S47_16795 PF00005 ABC transporter M1S47_16795 PF02687 FtsX-like permease family M1S47_16800 PF02321 Outer membrane efflux protein M1S47_16815 PF00929 Exonuclease M1S47_16820 PF03193 RsgA GTPase M1S47_16830 PF00462 Glutaredoxin M1S47_16835 PF02556 Preprotein translocase subunit SecB M1S47_16850 PF00109 Beta-ketoacyl synthase, N-terminal domain M1S47_16850 PF02801 Beta-ketoacyl synthase, C-terminal domain M1S47_16865 PF02801 Beta-ketoacyl synthase, C-terminal domain M1S47_16865 PF00109 Beta-ketoacyl synthase, N-terminal domain M1S47_16875 PF04820 Tryptophan halogenase M1S47_16895 PF00221 Aromatic amino acid lyase M1S47_16910 PF00501 AMP-binding enzyme M1S47_16910 PF13193 AMP-binding enzyme C-terminal domain M1S47_16920 PF00550 Phosphopantetheine attachment site M1S47_16925 PF00550 Phosphopantetheine attachment site M1S47_16940 PF01926 50S ribosome-binding GTPase M1S47_16940 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal M1S47_16945 PF13360 PQQ-like domain M1S47_16955 PF13393 Histidyl-tRNA synthetase M1S47_16955 PF03129 Anticodon binding domain M1S47_16960 PF04551 GcpE protein M1S47_16965 PF13464 Domain of unknown function (DUF4115) M1S47_16975 PF04055 Radical SAM superfamily M1S47_16980 PF00334 Nucleoside diphosphate kinase M1S47_16985 PF04384 Iron-sulphur cluster assembly M1S47_16990 PF01569 PAP2 superfamily M1S47_16995 PF13439 Glycosyltransferase Family 4 M1S47_16995 PF00534 Glycosyl transferases group 1 M1S47_17000 PF17804 Tail specific protease N-terminal domain M1S47_17000 PF03572 Peptidase family S41 M1S47_17000 PF11818 C-terminal domain of tail specific protease (DUF3340) M1S47_17000 PF00595 PDZ domain M1S47_17005 PF00933 Glycosyl hydrolase family 3 N terminal domain M1S47_17015 PF00561 alpha/beta hydrolase fold M1S47_17020 PF00171 Aldehyde dehydrogenase family M1S47_17025 PF00171 Aldehyde dehydrogenase family M1S47_17030 PF01202 Shikimate kinase M1S47_17035 PF02447 GntP family permease M1S47_17040 PF01081 KDPG and KHG aldolase M1S47_17045 PF00920 Dehydratase family M1S47_17050 PF00871 Acetokinase family M1S47_17055 PF01515 Phosphate acetyl/butaryl transferase M1S47_17055 PF07085 DRTGG domain M1S47_17060 PF05683 Fumarase C-terminus M1S47_17060 PF05681 Fumarate hydratase (Fumerase) M1S47_17075 PF06689 ClpX C4-type zinc finger M1S47_17075 PF10431 C-terminal, D2-small domain, of ClpB protein M1S47_17075 PF07724 AAA domain (Cdc48 subfamily) M1S47_17080 PF00574 Clp protease M1S47_17085 PF05697 Bacterial trigger factor protein (TF) M1S47_17085 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase M1S47_17085 PF05698 Bacterial trigger factor protein (TF) C-terminus M1S47_17090 PF07715 TonB-dependent Receptor Plug Domain M1S47_17090 PF00593 TonB dependent receptor M1S47_17095 PF13640 2OG-Fe(II) oxygenase superfamily M1S47_17095 PF18331 PKHD-type hydroxylase C-terminal domain M1S47_17100 PF00682 HMGL-like M1S47_17100 PF08502 LeuA allosteric (dimerisation) domain M1S47_17105 PF00561 alpha/beta hydrolase fold M1S47_17110 PF00561 alpha/beta hydrolase fold M1S47_17110 PF07021 Methionine biosynthesis protein MetW M1S47_17120 PF01725 Ham1 family M1S47_17130 PF02416 mttA/Hcf106 family M1S47_17135 PF02416 mttA/Hcf106 family M1S47_17140 PF00902 Sec-independent protein translocase protein (TatC) M1S47_17160 PF01790 Prolipoprotein diacylglyceryl transferase M1S47_17175 PF00303 Thymidylate synthase M1S47_17180 PF00186 Dihydrofolate reductase M1S47_17190 PF01625 Peptide methionine sulfoxide reductase M1S47_17200 PF01618 MotA/TolQ/ExbB proton channel family M1S47_17210 PF01842 ACT domain M1S47_17210 PF00551 Formyl transferase M1S47_17220 PF00171 Aldehyde dehydrogenase family M1S47_17225 PF00830 Ribosomal L28 family M1S47_17230 PF00471 Ribosomal protein L33 M1S47_17235 PF00999 Sodium/hydrogen exchanger family M1S47_17235 PF02254 TrkA-N domain M1S47_17255 PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) M1S47_17260 PF00580 UvrD/REP helicase N-terminal domain M1S47_17260 PF13361 UvrD-like helicase C-terminal domain M1S47_17285 PF01638 HxlR-like helix-turn-helix M1S47_17290 PF08240 Alcohol dehydrogenase GroES-like domain M1S47_17290 PF00107 Zinc-binding dehydrogenase M1S47_17295 PF04102 SlyX M1S47_17300 PF12848 ABC transporter M1S47_17300 PF16326 ABC transporter C-terminal domain M1S47_17300 PF00005 ABC transporter M1S47_17305 PF01810 LysE type translocator M1S47_17310 PF03279 Bacterial lipid A biosynthesis acyltransferase M1S47_17320 PF00375 Sodium:dicarboxylate symporter family M1S47_17330 PF01118 Semialdehyde dehydrogenase, NAD binding domain M1S47_17330 PF02774 Semialdehyde dehydrogenase, dimerisation domain M1S47_17350 PF01416 tRNA pseudouridine synthase M1S47_17360 PF01176 Translation initiation factor 1A / IF-1 M1S47_17375 PF00180 Isocitrate/isopropylmalate dehydrogenase M1S47_17385 PF00694 Aconitase C-terminal domain M1S47_17390 PF00330 Aconitase family (aconitate hydratase) M1S47_17400 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M1S47_17400 PF03466 LysR substrate binding domain M1S47_17420 PF00293 NUDIX domain M1S47_17425 PF01590 GAF domain M1S47_17425 PF05524 PEP-utilising enzyme, N-terminal M1S47_17425 PF00391 PEP-utilising enzyme, mobile domain M1S47_17425 PF02896 PEP-utilising enzyme, TIM barrel domain M1S47_17430 PF00141 Peroxidase M1S47_17435 PF12706 Beta-lactamase superfamily domain M1S47_17440 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M1S47_17440 PF03466 LysR substrate binding domain M1S47_17450 PF02798 Glutathione S-transferase, N-terminal domain M1S47_17455 PF08279 HTH domain M1S47_17455 PF13280 WYL domain M1S47_17460 PF13419 Haloacid dehalogenase-like hydrolase M1S47_17465 PF00849 RNA pseudouridylate synthase M1S47_17465 PF01479 S4 domain M1S47_17470 PF12111 Polyribonucleotide phosphorylase C terminal M1S47_17470 PF10150 Ribonuclease E/G family M1S47_17470 PF00575 S1 RNA binding domain M1S47_17475 PF13193 AMP-binding enzyme C-terminal domain M1S47_17475 PF00501 AMP-binding enzyme M1S47_17490 PF03466 LysR substrate binding domain M1S47_17490 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M1S47_17495 PF00106 short chain dehydrogenase M1S47_17500 PF04055 Radical SAM superfamily M1S47_17500 PF06969 HemN C-terminal domain M1S47_17510 PF01554 MatE M1S47_17515 PF08028 Acyl-CoA dehydrogenase, C-terminal domain M1S47_17515 PF02770 Acyl-CoA dehydrogenase, middle domain M1S47_17515 PF02771 Acyl-CoA dehydrogenase, N-terminal domain M1S47_17520 PF02771 Acyl-CoA dehydrogenase, N-terminal domain M1S47_17520 PF08028 Acyl-CoA dehydrogenase, C-terminal domain M1S47_17525 PF03109 ABC1 family M1S47_17530 PF01197 Ribosomal protein L31 M1S47_17545 PF02537 CrcB-like protein, Camphor Resistance (CrcB) M1S47_17565 PF03884 DNA gyrase inhibitor YacG M1S47_17570 PF00753 Metallo-beta-lactamase superfamily M1S47_17575 PF00762 Ferrochelatase M1S47_17585 PF01177 Asp/Glu/Hydantoin racemase M1S47_17600 PF01206 Sulfurtransferase TusA M1S47_17605 PF00571 CBS domain M1S47_17605 PF03471 Transporter associated domain M1S47_17610 PF00795 Carbon-nitrogen hydrolase M1S47_17615 PF01588 Putative tRNA binding domain M1S47_17625 PF07963 Prokaryotic N-terminal methylation motif M1S47_17625 PF08334 Type II secretion system (T2SS), protein G M1S47_17630 PF00482 Type II secretion system (T2SS), protein F M1S47_17635 PF00270 DEAD/DEAH box helicase M1S47_17635 PF00271 Helicase conserved C-terminal domain M1S47_17635 PF17764 3′ DNA-binding domain (3′BD) M1S47_17635 PF18319 PriA DNA helicase Cys-rich region (CRR) domain M1S47_17635 PF18074 Primosomal protein N C-terminal domain M1S47_17640 PF02254 TrkA-N domain M1S47_17640 PF00999 Sodium/hydrogen exchanger family M1S47_17645 PF01430 Hsp33 protein M1S47_17655 PF00226 DnaJ domain M1S47_17655 PF01556 DnaJ C terminal domain M1S47_17665 PF01544 CorA-like Mg2+ transporter protein M1S47_17670 PF00575 S1 RNA binding domain M1S47_17670 PF01138 3' exoribonuclease family, domain 1 M1S47_17670 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain M1S47_17670 PF00013 KH domain M1S47_17670 PF03725 3' exoribonuclease family, domain 2 M1S47_17675 PF00312 Ribosomal protein S15 M1S47_17680 PF00144 Beta-lactamase M1S47_17685 PF13538 UvrD-like helicase C-terminal domain M1S47_17690 PF00580 UvrD/REP helicase N-terminal domain M1S47_17690 PF12705 PD-(D/E)XK nuclease superfamily M1S47_17690 PF13361 UvrD-like helicase C-terminal domain M1S47_17695 PF17946 RecC C-terminal domain M1S47_17705 PF03976 Polyphosphate kinase 2 (PPK2) M1S47_17715 PF01209 ubiE/COQ5 methyltransferase family M1S47_17725 PF03109 ABC1 family M1S47_17730 PF01494 FAD binding domain M1S47_17735 PF01502 Phosphoribosyl-AMP cyclohydrolase M1S47_17750 PF13244 Domain of unknown function (DUF4040) M1S47_17750 PF04039 Domain related to MnhB subunit of Na+/H+ antiporter M1S47_17750 PF00361 Proton-conducting membrane transporter M1S47_17750 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus M1S47_17755 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L M1S47_17760 PF00361 Proton-conducting membrane transporter M1S47_17765 PF01899 Na+/H+ ion antiporter subunit M1S47_17770 PF04066 Multiple resistance and pH regulation protein F (MrpF / PhaF) M1S47_17775 PF03334 Na+/H+ antiporter subunit M1S47_17780 PF02033 Ribosome-binding factor A M1S47_17785 PF04760 Translation initiation factor IF-2, N-terminal region M1S47_17785 PF08364 Bacterial translation initiation factor IF-2 associated region M1S47_17785 PF11987 Translation-initiation factor 2 M1S47_17785 PF00009 Elongation factor Tu GTP binding domain M1S47_17790 PF13184 NusA-like KH domain M1S47_17790 PF08529 NusA N-terminal domain M1S47_17790 PF00575 S1 RNA binding domain M1S47_17795 PF17384 RimP C-terminal SH3 domain M1S47_17795 PF02576 RimP N-terminal domain M1S47_17815 PF03840 Preprotein translocase SecG subunit M1S47_17820 PF00121 Triosephosphate isomerase M1S47_17825 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain M1S47_17825 PF00437 Type II/IV secretion system protein M1S47_17830 PF00482 Type II secretion system (T2SS), protein F M1S47_17840 PF06750 Bacterial Peptidase A24 N-terminal domain M1S47_17840 PF01478 Type IV leader peptidase family M1S47_17845 PF01121 Dephospho-CoA kinase M1S47_17855 PF00588 SpoU rRNA Methylase family M1S47_17855 PF08032 RNA 2'-O ribose methyltransferase substrate binding M1S47_17860 PF06865 Pyrimidine/purine nucleoside phosphorylase M1S47_17870 PF02463 RecF/RecN/SMC N terminal domain M1S47_17875 PF02622 Uncharacterized ACR, COG1678 M1S47_17880 PF03652 Holliday junction resolvase M1S47_17885 PF13533 Biotin-lipoyl like M1S47_17910 PF02805 Metal binding domain of Ada M1S47_17910 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain M1S47_17910 PF12833 Helix-turn-helix domain M1S47_17910 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain M1S47_17915 PF01066 CDP-alcohol phosphatidyltransferase M1S47_17925 PF01541 GIY-YIG catalytic domain M1S47_17925 PF02151 UvrB/uvrC motif M1S47_17925 PF08459 UvrC Helix-hairpin-helix N-terminal M1S47_17945 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain M1S47_17945 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain M1S47_17945 PF00378 Enoyl-CoA hydratase/isomerase M1S47_17950 PF02803 Thiolase, C-terminal domain M1S47_17950 PF00108 Thiolase, N-terminal domain M1S47_17970 PF09278 MerR, DNA binding M1S47_17970 PF00376 MerR family regulatory protein M1S47_17980 PF01323 DSBA-like thioredoxin domain M1S47_17995 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M1S47_17995 PF00183 Hsp90 protein M1S47_18010 PF13726 Na+-H+ antiporter family M1S47_18010 PF03553 Na+/H+ antiporter family M1S47_18015 PF00561 alpha/beta hydrolase fold M1S47_18035 PF04998 RNA polymerase Rpb1, domain 5 M1S47_18035 PF05000 RNA polymerase Rpb1, domain 4 M1S47_18035 PF04997 RNA polymerase Rpb1, domain 1 M1S47_18035 PF00623 RNA polymerase Rpb1, domain 2 M1S47_18035 PF04983 RNA polymerase Rpb1, domain 3 M1S47_18040 PF04565 RNA polymerase Rpb2, domain 3 M1S47_18040 PF04561 RNA polymerase Rpb2, domain 2 M1S47_18040 PF10385 RNA polymerase beta subunit external 1 domain M1S47_18040 PF00562 RNA polymerase Rpb2, domain 6 M1S47_18040 PF04560 RNA polymerase Rpb2, domain 7 M1S47_18040 PF04563 RNA polymerase beta subunit M1S47_18045 PF16320 Ribosomal protein L7/L12 dimerisation domain M1S47_18045 PF00542 Ribosomal protein L7/L12 C-terminal domain M1S47_18050 PF00466 Ribosomal protein L10 M1S47_18055 PF00687 Ribosomal protein L1p/L10e family M1S47_18060 PF00298 Ribosomal protein L11, RNA binding domain M1S47_18060 PF03946 Ribosomal protein L11, N-terminal domain M1S47_18065 PF00467 KOW motif M1S47_18065 PF02357 Transcription termination factor nusG M1S47_18070 PF00584 SecE/Sec61-gamma subunits of protein translocation complex M1S47_18080 PF00009 Elongation factor Tu GTP binding domain M1S47_18080 PF03143 Elongation factor Tu C-terminal domain M1S47_18080 PF03144 Elongation factor Tu domain 2 M1S47_18105 PF04715 Anthranilate synthase component I, N terminal region M1S47_18105 PF00425 chorismate binding enzyme M1S47_18110 PF13419 Haloacid dehalogenase-like hydrolase M1S47_18115 PF00498 FHA domain M1S47_18115 PF12401 Protein of unknown function (DUF2662) M1S47_18120 PF00263 Bacterial type II and III secretion system protein M1S47_18120 PF03958 Bacterial type II/III secretion system short domain M1S47_18135 PF00816 H-NS histone family M1S47_18160 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain M1S47_18160 PF03900 Porphobilinogen deaminase, C-terminal domain M1S47_18165 PF04397 LytTr DNA-binding domain M1S47_18165 PF00072 Response regulator receiver domain M1S47_18170 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M1S47_18170 PF06580 Histidine kinase M1S47_18170 PF07694 5TMR of 5TMR-LYT M1S47_18175 PF14698 Argininosuccinate lyase C-terminal M1S47_18175 PF00206 Lyase M1S47_18180 PF04362 Bacterial Fe(2+) trafficking M1S47_18185 PF01895 PhoU domain M1S47_18190 PF02321 Outer membrane efflux protein M1S47_18195 PF00892 EamA-like transporter family M1S47_18210 PF13667 ThiC-associated domain M1S47_18210 PF01964 Radical SAM ThiC family M1S47_18215 PF00293 NUDIX domain M1S47_18220 PF00149 Calcineurin-like phosphoesterase M1S47_18225 PF01258 Prokaryotic dksA/traR C4-type zinc finger M1S47_18230 PF00749 tRNA synthetases class I (E and Q), catalytic domain M1S47_18235 PF01098 Cell cycle protein M1S47_18240 PF02875 Mur ligase family, glutamate ligase domain M1S47_18240 PF08245 Mur ligase middle domain M1S47_18250 PF07664 Ferrous iron transport protein B C terminus M1S47_18250 PF02421 Ferrous iron transport protein B M1S47_18250 PF07670 Nucleoside recognition M1S47_18260 PF02899 Phage integrase, N-terminal SAM-like domain M1S47_18260 PF00589 Phage integrase family M1S47_18265 PF10411 Disulfide bond isomerase protein N-terminus M1S47_18265 PF13098 Thioredoxin-like domain M1S47_18270 PF01842 ACT domain M1S47_18270 PF00742 Homoserine dehydrogenase M1S47_18270 PF03447 Homoserine dehydrogenase, NAD binding domain M1S47_18275 PF00291 Pyridoxal-phosphate dependent enzyme M1S47_18280 PF00768 D-alanyl-D-alanine carboxypeptidase M1S47_18285 PF00196 Bacterial regulatory proteins, luxR family M1S47_18285 PF00072 Response regulator receiver domain M1S47_18290 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M1S47_18290 PF00512 His Kinase A (phospho-acceptor) domain M1S47_18295 PF02954 Bacterial regulatory protein, Fis family M1S47_18295 PF00072 Response regulator receiver domain M1S47_18295 PF00158 Sigma-54 interaction domain M1S47_18300 PF03572 Peptidase family S41 M1S47_18300 PF00595 PDZ domain M1S47_18305 PF01676 Metalloenzyme superfamily M1S47_18305 PF06415 BPG-independent PGAM N-terminus (iPGM_N) M1S47_18310 PF03739 Lipopolysaccharide export system permease LptF/LptG M1S47_18320 PF02789 Cytosol aminopeptidase family, N-terminal domain M1S47_18320 PF00883 Cytosol aminopeptidase family, catalytic domain M1S47_18340 PF00677 Lumazine binding domain M1S47_18350 PF01872 RibD C-terminal domain M1S47_18350 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region M1S47_18355 PF03477 ATP cone domain M1S47_18360 PF00909 Ammonium Transporter Family M1S47_18365 PF00543 Nitrogen regulatory protein P-II M1S47_18385 PF01636 Phosphotransferase enzyme family M1S47_18390 PF04655 Aminoglycoside/hydroxyurea antibiotic resistance kinase M1S47_18410 PF00440 Bacterial regulatory proteins, tetR family M1S47_18410 PF02909 Tetracyclin repressor-like, C-terminal domain M1S47_18415 PF07690 Major Facilitator Superfamily M1S47_18425 PF01740 STAS domain M1S47_18425 PF00916 Sulfate permease family M1S47_18430 PF00582 Universal stress protein family M1S47_18450 PF00665 Integrase core domain M1S47_18465 PF00155 Aminotransferase class I and II M1S47_18465 PF00392 Bacterial regulatory proteins, gntR family M1S47_18475 PF00701 Dihydrodipicolinate synthetase family M1S47_18490 PF03573 outer membrane porin, OprD family M1S47_18495 PF00719 Inorganic pyrophosphatase M1S47_18510 PF13193 AMP-binding enzyme C-terminal domain M1S47_18510 PF00501 AMP-binding enzyme M1S47_18515 PF03989 DNA gyrase C-terminal domain, beta-propeller M1S47_18515 PF00521 DNA gyrase/topoisomerase IV, subunit A M1S47_18520 PF07690 Major Facilitator Superfamily M1S47_18525 PF03458 UPF0126 domain M1S47_18530 PF02810 SEC-C motif M1S47_18535 PF03741 Integral membrane protein TerC family M1S47_18535 PF03471 Transporter associated domain M1S47_18540 PF03641 Possible lysine decarboxylase M1S47_18545 PF07690 Major Facilitator Superfamily M1S47_18555 PF00817 impB/mucB/samB family M1S47_18555 PF11799 impB/mucB/samB family C-terminal domain M1S47_18555 PF11798 IMS family HHH motif M1S47_18575 PF11842 Domain of unknown function (DUF3362) M1S47_18575 PF04055 Radical SAM superfamily M1S47_18575 PF08497 Radical SAM N-terminal M1S47_18595 PF03358 NADPH-dependent FMN reductase M1S47_18605 PF00291 Pyridoxal-phosphate dependent enzyme M1S47_18665 PF01327 Polypeptide deformylase M1S47_18675 PF17782 DprA winged helix domain M1S47_18675 PF02481 DNA recombination-mediator protein A M1S47_18680 PF01300 Telomere recombination M1S47_18685 PF00892 EamA-like transporter family M1S47_18690 PF00440 Bacterial regulatory proteins, tetR family M1S47_18695 PF07690 Major Facilitator Superfamily M1S47_18705 PF00255 Glutathione peroxidase M1S47_18715 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain M1S47_18720 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain M1S47_18720 PF02874 ATP synthase alpha/beta family, beta-barrel domain M1S47_18725 PF00231 ATP synthase M1S47_18730 PF02874 ATP synthase alpha/beta family, beta-barrel domain M1S47_18730 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain M1S47_18730 PF00306 ATP synthase alpha/beta chain, C terminal domain M1S47_18735 PF00213 ATP synthase delta (OSCP) subunit M1S47_18740 PF00430 ATP synthase B/B' CF(0) M1S47_18745 PF00137 ATP synthase subunit C M1S47_18750 PF00119 ATP synthase A chain M1S47_18770 PF00005 ABC transporter M1S47_18775 PF00950 ABC 3 transport family M1S47_18780 PF01810 LysE type translocator M1S47_18785 PF04261 Dyp-type peroxidase family M1S47_18795 PF00390 Malic enzyme, N-terminal domain M1S47_18795 PF03949 Malic enzyme, NAD binding domain M1S47_18800 PF03485 Arginyl tRNA synthetase N terminal domain M1S47_18800 PF00750 tRNA synthetases class I (R) M1S47_18800 PF05746 DALR anticodon binding domain M1S47_18820 PF05726 Pirin C-terminal cupin domain M1S47_18820 PF02678 Pirin M1S47_18830 PF03551 Transcriptional regulator PadR-like family M1S47_18835 PF13427 Domain of unknown function (DUF4111) M1S47_18835 PF01909 Nucleotidyltransferase domain M1S47_18840 PF00117 Glutamine amidotransferase class-I M1S47_18840 PF00958 GMP synthase C terminal domain M1S47_18840 PF02540 NAD synthase M1S47_18845 PF04286 Protein of unknown function (DUF445) M1S47_18850 PF07681 DoxX M1S47_18855 PF09335 SNARE associated Golgi protein M1S47_18870 PF13614 AAA domain M1S47_18880 PF01722 BolA-like protein M1S47_18890 PF01648 4'-phosphopantetheinyl transferase superfamily M1S47_18895 PF12697 Alpha/beta hydrolase family M1S47_18915 PF16197 Ketoacyl-synthetase C-terminal extension M1S47_18915 PF14765 Polyketide synthase dehydratase M1S47_18915 PF08242 Methyltransferase domain M1S47_18915 PF00975 Thioesterase domain M1S47_18915 PF00550 Phosphopantetheine attachment site M1S47_18915 PF00109 Beta-ketoacyl synthase, N-terminal domain M1S47_18915 PF02801 Beta-ketoacyl synthase, C-terminal domain M1S47_18920 PF02771 Acyl-CoA dehydrogenase, N-terminal domain M1S47_18920 PF02770 Acyl-CoA dehydrogenase, middle domain M1S47_18920 PF00441 Acyl-CoA dehydrogenase, C-terminal domain M1S47_18925 PF00501 AMP-binding enzyme M1S47_18930 PF03472 Autoinducer binding domain M1S47_18930 PF00196 Bacterial regulatory proteins, luxR family M1S47_18940 PF00765 Autoinducer synthase M1S47_18945 PF00083 Sugar (and other) transporter M1S47_18945 PF07690 Major Facilitator Superfamily M1S47_18950 PF00378 Enoyl-CoA hydratase/isomerase M1S47_18955 PF00378 Enoyl-CoA hydratase/isomerase M1S47_18960 PF02771 Acyl-CoA dehydrogenase, N-terminal domain M1S47_18960 PF02770 Acyl-CoA dehydrogenase, middle domain M1S47_18960 PF00441 Acyl-CoA dehydrogenase, C-terminal domain M1S47_18965 PF13193 AMP-binding enzyme C-terminal domain M1S47_18965 PF00501 AMP-binding enzyme M1S47_18970 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase M1S47_18970 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase M1S47_18975 PF00171 Aldehyde dehydrogenase family M1S47_18985 PF00324 Amino acid permease M1S47_18990 PF00324 Amino acid permease M1S47_18995 PF01042 Endoribonuclease L-PSP M1S47_19000 PF01168 Alanine racemase, N-terminal domain M1S47_19000 PF00842 Alanine racemase, C-terminal domain M1S47_19005 PF01266 FAD dependent oxidoreductase M1S47_19010 PF01037 Lrp/AsnC ligand binding domain M1S47_19020 PF00593 TonB dependent receptor M1S47_19020 PF07715 TonB-dependent Receptor Plug Domain M1S47_19035 PF00849 RNA pseudouridylate synthase M1S47_19050 PF08361 MAATS-type transcriptional repressor, C-terminal region M1S47_19050 PF00440 Bacterial regulatory proteins, tetR family M1S47_19060 PF00109 Beta-ketoacyl synthase, N-terminal domain M1S47_19060 PF02801 Beta-ketoacyl synthase, C-terminal domain M1S47_19095 PF00330 Aconitase family (aconitate hydratase) M1S47_19095 PF00694 Aconitase C-terminal domain M1S47_19100 PF00285 Citrate synthase, C-terminal domain M1S47_19110 PF00392 Bacterial regulatory proteins, gntR family M1S47_19110 PF07729 FCD domain M1S47_19120 PF00155 Aminotransferase class I and II M1S47_19125 PF09330 D-lactate dehydrogenase, membrane binding M1S47_19125 PF01565 FAD binding domain M1S47_19130 PF01070 FMN-dependent dehydrogenase M1S47_19135 PF00392 Bacterial regulatory proteins, gntR family M1S47_19135 PF07729 FCD domain M1S47_19140 PF02652 L-lactate permease M1S47_19145 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain M1S47_19145 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III M1S47_19145 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II M1S47_19145 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I M1S47_19150 PF16363 GDP-mannose 4,6 dehydratase M1S47_19155 PF00342 Phosphoglucose isomerase M1S47_19160 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain M1S47_19160 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain M1S47_19160 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain M1S47_19165 PF00483 Nucleotidyl transferase M1S47_19170 PF02397 Bacterial sugar transferase M1S47_19175 PF00535 Glycosyl transferase family 2 M1S47_19205 PF08666 SAF domain M1S47_19205 PF03102 NeuB family M1S47_19220 PF02348 Cytidylyltransferase M1S47_19225 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family M1S47_19230 PF02719 Polysaccharide biosynthesis protein M1S47_19235 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain M1S47_19235 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain M1S47_19235 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain M1S47_19240 PF18412 Outer-membrane lipoprotein Wza C-terminal domain M1S47_19240 PF10531 SLBB domain M1S47_19240 PF02563 Polysaccharide biosynthesis/export protein M1S47_19245 PF01451 Low molecular weight phosphotyrosine protein phosphatase M1S47_19250 PF13807 G-rich domain on putative tyrosine kinase M1S47_19250 PF13614 AAA domain M1S47_19250 PF02706 Chain length determinant protein M1S47_19255 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase M1S47_19255 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase M1S47_19260 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase M1S47_19260 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase M1S47_19265 PF03023 Lipid II flippase MurJ M1S47_19270 PF01510 N-acetylmuramoyl-L-alanine amidase M1S47_19275 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain M1S47_19275 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain M1S47_19285 PF05506 Domain of unknown function (DUF756) M1S47_19285 PF04185 Phosphoesterase family M1S47_19295 PF03725 3' exoribonuclease family, domain 2 M1S47_19295 PF01138 3' exoribonuclease family, domain 1 M1S47_19300 PF00487 Fatty acid desaturase M1S47_19305 PF00175 Oxidoreductase NAD-binding domain M1S47_19310 PF00440 Bacterial regulatory proteins, tetR family M1S47_19315 PF00440 Bacterial regulatory proteins, tetR family M1S47_19315 PF08360 QacR-like protein, C-terminal region M1S47_19320 PF01323 DSBA-like thioredoxin domain M1S47_19330 PF13419 Haloacid dehalogenase-like hydrolase M1S47_19335 PF00106 short chain dehydrogenase M1S47_19350 PF00696 Amino acid kinase family M1S47_19350 PF00583 Acetyltransferase (GNAT) family M1S47_19355 PF09084 NMT1/THI5 like M1S47_19360 PF09084 NMT1/THI5 like M1S47_19365 PF00296 Luciferase-like monooxygenase M1S47_19370 PF00528 Binding-protein-dependent transport system inner membrane component M1S47_19375 PF00005 ABC transporter M1S47_19380 PF00440 Bacterial regulatory proteins, tetR family M1S47_19380 PF08362 YcdC-like protein, C-terminal region M1S47_19385 PF01048 Phosphorylase superfamily M1S47_19395 PF01687 Riboflavin kinase M1S47_19395 PF06574 FAD synthetase M1S47_19400 PF06827 Zinc finger found in FPG and IleRS M1S47_19400 PF08264 Anticodon-binding domain of tRNA M1S47_19400 PF00133 tRNA synthetases class I (I, L, M and V) M1S47_19405 PF01252 Signal peptidase (SPase) II M1S47_19410 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase M1S47_19450 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD M1S47_19455 PF07859 alpha/beta hydrolase fold M1S47_19475 PF03466 LysR substrate binding domain M1S47_19475 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M1S47_19480 PF01025 GrpE M1S47_19485 PF00012 Hsp70 protein M1S47_19505 PF13406 Transglycosylase SLT domain M1S47_19510 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain M1S47_19510 PF02222 ATP-grasp domain M1S47_19515 PF00731 AIR carboxylase M1S47_19525 PF08245 Mur ligase middle domain M1S47_19525 PF02875 Mur ligase family, glutamate ligase domain M1S47_19525 PF01225 Mur ligase family, catalytic domain M1S47_19535 PF01569 PAP2 superfamily M1S47_19540 PF03741 Integral membrane protein TerC family M1S47_19550 PF03738 Glutathionylspermidine synthase preATP-grasp M1S47_19560 PF01979 Amidohydrolase family M1S47_19565 PF00156 Phosphoribosyl transferase domain M1S47_19575 PF10411 Disulfide bond isomerase protein N-terminus M1S47_19575 PF13098 Thioredoxin-like domain M1S47_19580 PF01545 Cation efflux family M1S47_19580 PF16916 Dimerisation domain of Zinc Transporter M1S47_19585 PF02583 Metal-sensitive transcriptional repressor M1S47_19590 PF10396 GTP-binding protein TrmE N-terminus M1S47_19590 PF12631 MnmE helical domain M1S47_19590 PF01926 50S ribosome-binding GTPase M1S47_19595 PF14849 YidC periplasmic domain M1S47_19595 PF02096 60Kd inner membrane protein M1S47_19600 PF01809 Putative membrane protein insertion efficiency factor M1S47_19605 PF00825 Ribonuclease P M1S47_19610 PF00468 Ribosomal protein L34 M1S47_19665 PF13438 Domain of unknown function (DUF4113) M1S47_19665 PF11799 impB/mucB/samB family C-terminal domain M1S47_19665 PF00817 impB/mucB/samB family M1S47_19685 PF06122 Conjugative relaxosome accessory transposon protein M1S47_19695 PF06986 Type-1V conjugative transfer system mating pair stabilisation M1S47_19705 PF06834 TraU protein M1S47_19735 PF13098 Thioredoxin-like domain M1S47_19735 PF10411 Disulfide bond isomerase protein N-terminus M1S47_19785 PF00239 Resolvase, N terminal domain M1S47_19785 PF02796 Helix-turn-helix domain of resolvase M1S47_19840 PF08751 TrwC relaxase M1S47_19840 PF18272 single-stranded DNA binding TraI N-terminal subdomain M1S47_19840 PF18340 DNA relaxase TraI 2B/2B-like domain M1S47_19840 PF07057 DNA helicase TraI M1S47_19865 PF00684 DnaJ central domain M1S47_19865 PF01556 DnaJ C terminal domain M1S47_19865 PF00226 DnaJ domain M1S47_19910 PF00905 Penicillin binding protein transpeptidase domain M1S47_19930 PF13614 AAA domain M1S47_19935 PF10544 T5orf172 domain M1S47_20015 PF13614 AAA domain M1S47_20065 PF00816 H-NS histone family M1S47_20090 PF07733 Bacterial DNA polymerase III alpha NTPase domain M1S47_20090 PF17657 Bacterial DNA polymerase III alpha subunit finger domain M1S47_20090 PF14579 Helix-hairpin-helix motif M1S47_20090 PF02811 PHP domain M1S47_20105 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain M1S47_20105 PF01367 5'-3' exonuclease, C-terminal SAM fold M1S47_20105 PF00476 DNA polymerase family A M1S47_20105 PF01612 3'-5' exonuclease M1S47_20110 PF00154 recA bacterial DNA recombination protein M1S47_20110 PF03161 LAGLIDADG DNA endonuclease family M1S47_20135 PF02463 RecF/RecN/SMC N terminal domain M1S47_20135 PF06470 SMC proteins Flexible Hinge Domain M1S47_20155 PF00317 Ribonucleotide reductase, all-alpha domain M1S47_20155 PF02867 Ribonucleotide reductase, barrel domain M1S47_20155 PF03477 ATP cone domain M1S47_20160 PF00268 Ribonucleotide reductase, small chain M1S47_20200 PF00929 Exonuclease M1S47_20235 PF13737 Transposase DDE domain M1S47_20245 PF16925 Tetracyclin repressor-like, C-terminal domain M1S47_20245 PF00440 Bacterial regulatory proteins, tetR family M1S47_20255 PF00724 NADH:flavin oxidoreductase / NADH oxidase family M1S47_20265 PF00465 Iron-containing alcohol dehydrogenase M1S47_20280 PF00756 Putative esterase M1S47_20285 PF08240 Alcohol dehydrogenase GroES-like domain M1S47_20285 PF00107 Zinc-binding dehydrogenase M1S47_20290 PF02583 Metal-sensitive transcriptional repressor M1S47_20305 PF00107 Zinc-binding dehydrogenase M1S47_20305 PF08240 Alcohol dehydrogenase GroES-like domain M1S47_20305 PF13823 Alcohol dehydrogenase GroES-associated M1S47_20370 PF02216 B domain M1S47_20370 PF00746 LPXTG cell wall anchor motif M1S47_20370 PF01476 LysM domain M1S47_20370 PF03373 Octapeptide repeat M1S47_20370 PF04650 YSIRK type signal peptide M1S47_20385 PF17757 UvrB interaction domain M1S47_20385 PF00271 Helicase conserved C-terminal domain M1S47_20385 PF03461 TRCF domain M1S47_20385 PF02559 CarD-like/TRCF domain M1S47_20385 PF00270 DEAD/DEAH box helicase M1S47_20405 PF00005 ABC transporter M1S47_20405 PF09383 NIL domain M1S47_20590 PF10410 DnaB-helicase binding domain of primase M1S47_20590 PF08275 DNA primase catalytic core, N-terminal domain M1S47_20590 PF01807 CHC2 zinc finger M1S47_20620 PF00625 Guanylate kinase M1S47_20635 PF07015 VirC1 protein M1S47_20645 PF02899 Phage integrase, N-terminal SAM-like domain M1S47_20645 PF00589 Phage integrase family