locus-tag class description M1S28_00005 PF00308 Bacterial dnaA protein M1S28_00005 PF08299 Bacterial dnaA protein helix-turn-helix M1S28_00005 PF11638 DnaA N-terminal domain M1S28_00010 PF00712 DNA polymerase III beta subunit, N-terminal domain M1S28_00010 PF02767 DNA polymerase III beta subunit, central domain M1S28_00010 PF02768 DNA polymerase III beta subunit, C-terminal domain M1S28_00015 PF02463 RecF/RecN/SMC N terminal domain M1S28_00020 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M1S28_00020 PF18053 DNA gyrase B subunit insert domain M1S28_00020 PF01751 Toprim domain M1S28_00020 PF00204 DNA gyrase B M1S28_00020 PF00986 DNA gyrase B subunit, carboxyl terminus M1S28_00030 PF09335 SNARE associated Golgi protein M1S28_00035 PF00005 ABC transporter M1S28_00035 PF12848 ABC transporter M1S28_00055 PF01521 Iron-sulphur cluster biosynthesis M1S28_00060 PF00561 alpha/beta hydrolase fold M1S28_00065 PF03702 Anhydro-N-acetylmuramic acid kinase M1S28_00070 PF00579 tRNA synthetases class I (W and Y) M1S28_00110 PF00209 Sodium:neurotransmitter symporter family M1S28_00120 PF01189 16S rRNA methyltransferase RsmB/F M1S28_00120 PF01029 NusB family M1S28_00125 PF02911 Formyl transferase, C-terminal domain M1S28_00125 PF00551 Formyl transferase M1S28_00130 PF00920 Dehydratase family M1S28_00145 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M1S28_00145 PF03466 LysR substrate binding domain M1S28_00150 PF00860 Permease family M1S28_00155 PF00311 Phosphoenolpyruvate carboxylase M1S28_00160 PF08361 MAATS-type transcriptional repressor, C-terminal region M1S28_00160 PF00440 Bacterial regulatory proteins, tetR family M1S28_00165 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion M1S28_00170 PF00873 AcrB/AcrD/AcrF family M1S28_00180 PF00684 DnaJ central domain M1S28_00180 PF01556 DnaJ C terminal domain M1S28_00180 PF00226 DnaJ domain M1S28_00190 PF01113 Dihydrodipicolinate reductase, N-terminus M1S28_00190 PF05173 Dihydrodipicolinate reductase, C-terminus M1S28_00200 PF07690 Major Facilitator Superfamily M1S28_00205 PF00248 Aldo/keto reductase family M1S28_00210 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M1S28_00210 PF03466 LysR substrate binding domain M1S28_00225 PF00392 Bacterial regulatory proteins, gntR family M1S28_00225 PF00155 Aminotransferase class I and II M1S28_00230 PF08240 Alcohol dehydrogenase GroES-like domain M1S28_00230 PF00107 Zinc-binding dehydrogenase M1S28_00235 PF03352 Methyladenine glycosylase M1S28_00250 PF00730 HhH-GPD superfamily base excision DNA repair protein M1S28_00250 PF10576 Iron-sulfur binding domain of endonuclease III M1S28_00250 PF00633 Helix-hairpin-helix motif M1S28_00250 PF14815 NUDIX domain M1S28_00265 PF07043 Protein of unknown function (DUF1328) M1S28_00270 PF03692 Putative zinc- or iron-chelating domain M1S28_00275 PF07995 Glucose / Sorbosone dehydrogenase M1S28_00280 PF12002 MgsA AAA+ ATPase C terminal M1S28_00280 PF16193 AAA C-terminal domain M1S28_00280 PF00004 ATPase family associated with various cellular activities (AAA) M1S28_00285 PF01226 Formate/nitrite transporter M1S28_00295 PF01259 SAICAR synthetase M1S28_00305 PF00701 Dihydrodipicolinate synthetase family M1S28_00310 PF00857 Isochorismatase family M1S28_00315 PF01758 Sodium Bile acid symporter family M1S28_00320 PF01554 MatE M1S28_00325 PF04463 Protein of unknown function (DUF523) M1S28_00330 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily M1S28_00340 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily M1S28_00345 PF14497 Glutathione S-transferase, C-terminal domain M1S28_00345 PF02798 Glutathione S-transferase, N-terminal domain M1S28_00355 PF00324 Amino acid permease M1S28_00365 PF02492 CobW/HypB/UreG, nucleotide-binding domain M1S28_00365 PF07683 Cobalamin synthesis protein cobW C-terminal domain M1S28_00375 PF00392 Bacterial regulatory proteins, gntR family M1S28_00375 PF07702 UTRA domain M1S28_00380 PF05962 HutD M1S28_00385 PF17391 Urocanase N-terminal domain M1S28_00385 PF17392 Urocanase C-terminal domain M1S28_00385 PF01175 Urocanase Rossmann-like domain M1S28_00390 PF00221 Aromatic amino acid lyase M1S28_00395 PF00324 Amino acid permease M1S28_00400 PF01979 Amidohydrolase family M1S28_00405 PF00491 Arginase family M1S28_00420 PF01177 Asp/Glu/Hydantoin racemase M1S28_00425 PF01380 SIS domain M1S28_00430 PF12804 MobA-like NTP transferase domain M1S28_00430 PF00132 Bacterial transferase hexapeptide (six repeats) M1S28_00430 PF14602 Hexapeptide repeat of succinyl-transferase M1S28_00435 PF04608 Phosphatidylglycerophosphatase A M1S28_00440 PF00586 AIR synthase related protein, N-terminal domain M1S28_00440 PF02769 AIR synthase related protein, C-terminal domain M1S28_00445 PF01029 NusB family M1S28_00450 PF00885 6,7-dimethyl-8-ribityllumazine synthase M1S28_00455 PF00925 GTP cyclohydrolase II M1S28_00455 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase M1S28_00480 PF02580 D-Tyr-tRNA(Tyr) deacylase M1S28_00485 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family M1S28_00485 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain M1S28_00490 PF00581 Rhodanese-like domain M1S28_00495 PF02666 Phosphatidylserine decarboxylase M1S28_00500 PF03069 Acetamidase/Formamidase family M1S28_00520 PF11808 Phosphate regulon sensor protein PhoR M1S28_00520 PF00989 PAS fold M1S28_00520 PF00512 His Kinase A (phospho-acceptor) domain M1S28_00520 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M1S28_00525 PF00486 Transcriptional regulatory protein, C terminal M1S28_00525 PF00072 Response regulator receiver domain M1S28_00535 PF00106 short chain dehydrogenase M1S28_00540 PF01554 MatE M1S28_00545 PF00155 Aminotransferase class I and II M1S28_00550 PF04286 Protein of unknown function (DUF445) M1S28_00565 PF04262 Glutamate-cysteine ligase M1S28_00570 PF02600 Disulfide bond formation protein DsbB M1S28_00575 PF10106 Uncharacterized protein conserved in bacteria (DUF2345) M1S28_00575 PF13296 Putative type VI secretion system Rhs element Vgr M1S28_00575 PF04717 Type VI secretion system, phage-baseplate injector M1S28_00580 PF00877 NlpC/P60 family M1S28_00580 PF01476 LysM domain M1S28_00595 PF05728 Uncharacterised protein family (UPF0227) M1S28_00600 PF01751 Toprim domain M1S28_00600 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M1S28_00600 PF00986 DNA gyrase B subunit, carboxyl terminus M1S28_00600 PF00204 DNA gyrase B M1S28_00605 PF00106 short chain dehydrogenase M1S28_00610 PF04115 Ureidoglycolate lyase M1S28_00615 PF03561 Allantoicase repeat M1S28_00620 PF01494 FAD binding domain M1S28_00630 PF00860 Permease family M1S28_00635 PF00576 HIUase/Transthyretin family M1S28_00665 PF02683 Cytochrome C biogenesis protein transmembrane region M1S28_00665 PF11412 Disulphide bond corrector protein DsbC M1S28_00670 PF00990 Diguanylate cyclase, GGDEF domain M1S28_00670 PF07694 5TMR of 5TMR-LYT M1S28_00675 PF07859 alpha/beta hydrolase fold M1S28_00685 PF03960 ArsC family M1S28_00690 PF03372 Endonuclease/Exonuclease/phosphatase family M1S28_00695 PF00156 Phosphoribosyl transferase domain M1S28_00700 PF00593 TonB dependent receptor M1S28_00700 PF07715 TonB-dependent Receptor Plug Domain M1S28_00710 PF02951 Prokaryotic glutathione synthetase, N-terminal domain M1S28_00710 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain M1S28_00715 PF04101 Glycosyltransferase family 28 C-terminal domain M1S28_00715 PF03033 Glycosyltransferase family 28 N-terminal domain M1S28_00720 PF02875 Mur ligase family, glutamate ligase domain M1S28_00720 PF01225 Mur ligase family, catalytic domain M1S28_00720 PF08245 Mur ligase middle domain M1S28_00725 PF07478 D-ala D-ala ligase C-terminus M1S28_00725 PF01820 D-ala D-ala ligase N-terminus M1S28_00730 PF08478 POTRA domain, FtsQ-type M1S28_00730 PF03799 Cell division protein FtsQ M1S28_00735 PF02491 SHS2 domain inserted in FTSA M1S28_00740 PF00091 Tubulin/FtsZ family, GTPase domain M1S28_00740 PF12327 FtsZ family, C-terminal domain M1S28_00745 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase M1S28_00755 PF01551 Peptidase family M23 M1S28_00760 PF17831 Pyruvate dehydrogenase E1 component middle domain M1S28_00760 PF00456 Transketolase, thiamine diphosphate binding domain M1S28_00765 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) M1S28_00765 PF02817 e3 binding domain M1S28_00765 PF00364 Biotin-requiring enzyme M1S28_00775 PF01169 Uncharacterized protein family UPF0016 M1S28_00780 PF07715 TonB-dependent Receptor Plug Domain M1S28_00780 PF00593 TonB dependent receptor M1S28_00785 PF01613 Flavin reductase like domain M1S28_00785 PF00258 Flavodoxin M1S28_00790 PF03692 Putative zinc- or iron-chelating domain M1S28_00795 PF00571 CBS domain M1S28_00795 PF00478 IMP dehydrogenase / GMP reductase domain M1S28_00800 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I M1S28_00800 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II M1S28_00800 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain M1S28_00800 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III M1S28_00805 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region M1S28_00805 PF01243 Pyridoxamine 5'-phosphate oxidase M1S28_00810 PF01368 DHH family M1S28_00810 PF02272 DHHA1 domain M1S28_00810 PF17768 RecJ OB domain M1S28_00830 PF00724 NADH:flavin oxidoreductase / NADH oxidase family M1S28_00835 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) M1S28_00840 PF04452 RNA methyltransferase M1S28_00845 PF00924 Mechanosensitive ion channel M1S28_00855 PF13193 AMP-binding enzyme C-terminal domain M1S28_00855 PF00501 AMP-binding enzyme M1S28_00855 PF16177 Acetyl-coenzyme A synthetase N-terminus M1S28_00860 PF00857 Isochorismatase family M1S28_00865 PF01037 Lrp/AsnC ligand binding domain M1S28_00870 PF00872 Transposase, Mutator family M1S28_00875 PF00296 Luciferase-like monooxygenase M1S28_00880 PF03358 NADPH-dependent FMN reductase M1S28_00885 PF00072 Response regulator receiver domain M1S28_00885 PF00196 Bacterial regulatory proteins, luxR family M1S28_00895 PF00672 HAMP domain M1S28_00895 PF01627 Hpt domain M1S28_00895 PF00072 Response regulator receiver domain M1S28_00895 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M1S28_00895 PF00512 His Kinase A (phospho-acceptor) domain M1S28_00900 PF04341 Protein of unknown function, DUF485 M1S28_00905 PF00474 Sodium:solute symporter family M1S28_00915 PF02028 BCCT, betaine/carnitine/choline family transporter M1S28_00925 PF00990 Diguanylate cyclase, GGDEF domain M1S28_00935 PF00005 ABC transporter M1S28_00935 PF17755 UvrA DNA-binding domain M1S28_00935 PF17760 UvrA interaction domain M1S28_00940 PF16925 Tetracyclin repressor-like, C-terminal domain M1S28_00940 PF00440 Bacterial regulatory proteins, tetR family M1S28_00945 PF08240 Alcohol dehydrogenase GroES-like domain M1S28_00945 PF00107 Zinc-binding dehydrogenase M1S28_00955 PF06942 GlpM protein M1S28_00960 PF08543 Phosphomethylpyrimidine kinase M1S28_00960 PF03070 TENA/THI-4/PQQC family M1S28_00960 PF02581 Thiamine monophosphate synthase M1S28_00970 PF07690 Major Facilitator Superfamily M1S28_00975 PF00436 Single-strand binding protein family M1S28_00985 PF03591 AzlC protein M1S28_00995 PF00324 Amino acid permease M1S28_01000 PF00155 Aminotransferase class I and II M1S28_01000 PF00392 Bacterial regulatory proteins, gntR family M1S28_01005 PF00202 Aminotransferase class-III M1S28_01010 PF00171 Aldehyde dehydrogenase family M1S28_01015 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M1S28_01020 PF00857 Isochorismatase family M1S28_01025 PF02678 Pirin M1S28_01025 PF05726 Pirin C-terminal cupin domain M1S28_01030 PF01593 Flavin containing amine oxidoreductase M1S28_01050 PF07690 Major Facilitator Superfamily M1S28_01055 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M1S28_01055 PF03466 LysR substrate binding domain M1S28_01075 PF00248 Aldo/keto reductase family M1S28_01080 PF02311 AraC-like ligand binding domain M1S28_01080 PF12833 Helix-turn-helix domain M1S28_01110 PF01638 HxlR-like helix-turn-helix M1S28_01115 PF02525 Flavodoxin-like fold M1S28_01135 PF02705 K+ potassium transporter M1S28_01160 PF00230 Major intrinsic protein M1S28_01175 PF00977 Histidine biosynthesis protein M1S28_01180 PF01636 Phosphotransferase enzyme family M1S28_01195 PF03992 Antibiotic biosynthesis monooxygenase M1S28_01210 PF00977 Histidine biosynthesis protein M1S28_01225 PF00117 Glutamine amidotransferase class-I M1S28_01230 PF00475 Imidazoleglycerol-phosphate dehydratase M1S28_01250 PF00583 Acetyltransferase (GNAT) family M1S28_01255 PF02550 Acetyl-CoA hydrolase/transferase N-terminal domain M1S28_01255 PF13336 Acetyl-CoA hydrolase/transferase C-terminal domain M1S28_01265 PF00512 His Kinase A (phospho-acceptor) domain M1S28_01265 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M1S28_01265 PF00672 HAMP domain M1S28_01270 PF00486 Transcriptional regulatory protein, C terminal M1S28_01270 PF00072 Response regulator receiver domain M1S28_01275 PF09371 Tex-like protein N-terminal domain M1S28_01275 PF17674 HHH domain M1S28_01275 PF16921 Tex protein YqgF-like domain M1S28_01275 PF00575 S1 RNA binding domain M1S28_01280 PF01740 STAS domain M1S28_01280 PF00916 Sulfate permease family M1S28_01285 PF00106 short chain dehydrogenase M1S28_01290 PF01053 Cys/Met metabolism PLP-dependent enzyme M1S28_01295 PF00005 ABC transporter M1S28_01295 PF12848 ABC transporter M1S28_01320 PF04191 Phospholipid methyltransferase M1S28_01340 PF00529 HlyD membrane-fusion protein of T1SS M1S28_01340 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion M1S28_01345 PF00873 AcrB/AcrD/AcrF family M1S28_01350 PF01545 Cation efflux family M1S28_01380 PF00324 Amino acid permease M1S28_01395 PF00749 tRNA synthetases class I (E and Q), catalytic domain M1S28_01410 PF01795 MraW methylase family M1S28_01420 PF00905 Penicillin binding protein transpeptidase domain M1S28_01420 PF03717 Penicillin-binding Protein dimerisation domain M1S28_01425 PF08245 Mur ligase middle domain M1S28_01425 PF02875 Mur ligase family, glutamate ligase domain M1S28_01425 PF01225 Mur ligase family, catalytic domain M1S28_01430 PF08245 Mur ligase middle domain M1S28_01430 PF02875 Mur ligase family, glutamate ligase domain M1S28_01430 PF01225 Mur ligase family, catalytic domain M1S28_01435 PF00953 Glycosyl transferase family 4 M1S28_01445 PF13847 Methyltransferase domain M1S28_01450 PF00905 Penicillin binding protein transpeptidase domain M1S28_01450 PF17092 Penicillin-binding protein OB-like domain M1S28_01450 PF00912 Transglycosylase M1S28_01455 PF11104 Type IV pilus assembly protein PilM; M1S28_01460 PF05137 Fimbrial assembly protein (PilN) M1S28_01465 PF04350 Pilus assembly protein, PilO M1S28_01475 PF11741 AMIN domain M1S28_01475 PF00263 Bacterial type II and III secretion system protein M1S28_01475 PF03958 Bacterial type II/III secretion system short domain M1S28_01475 PF07660 Secretin and TonB N terminus short domain M1S28_01480 PF01202 Shikimate kinase M1S28_01485 PF01761 3-dehydroquinate synthase M1S28_01495 PF00310 Glutamine amidotransferases class-II M1S28_01495 PF04898 Glutamate synthase central domain M1S28_01495 PF01645 Conserved region in glutamate synthase M1S28_01495 PF01493 GXGXG motif M1S28_01500 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster M1S28_01500 PF07992 Pyridine nucleotide-disulphide oxidoreductase M1S28_01510 PF04011 LemA family M1S28_01515 PF04536 TPM domain M1S28_01525 PF07963 Prokaryotic N-terminal methylation motif M1S28_01525 PF00114 Pilin (bacterial filament) M1S28_01535 PF15864 Protein glycosylation ligase M1S28_01535 PF04932 O-Antigen ligase M1S28_01535 PF11846 Virulence factor membrane-bound polymerase, C-terminal M1S28_01545 PF00210 Ferritin-like domain M1S28_01550 PF04324 BFD-like [2Fe-2S] binding domain M1S28_01555 PF01042 Endoribonuclease L-PSP M1S28_01560 PF13291 ACT domain M1S28_01560 PF04607 Region found in RelA / SpoT proteins M1S28_01560 PF02824 TGS domain M1S28_01570 PF01192 RNA polymerase Rpb6 M1S28_01575 PF00625 Guanylate kinase M1S28_01580 PF02401 LytB protein M1S28_01620 PF00886 Ribosomal protein S16 M1S28_01625 PF01782 RimM N-terminal domain M1S28_01625 PF05239 PRC-barrel domain M1S28_01630 PF01746 tRNA (Guanine-1)-methyltransferase M1S28_01635 PF01245 Ribosomal protein L19 M1S28_01640 PF00561 alpha/beta hydrolase fold M1S28_01645 PF03280 Proteobacterial lipase chaperone protein M1S28_01650 PF16198 tRNA pseudouridylate synthase B C-terminal domain M1S28_01650 PF01509 TruB family pseudouridylate synthase (N terminal domain) M1S28_01650 PF09157 Pseudouridine synthase II TruB, C-terminal M1S28_01655 PF01925 Sulfite exporter TauE/SafE M1S28_01665 PF00892 EamA-like transporter family M1S28_01670 PF00892 EamA-like transporter family M1S28_01675 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain M1S28_01675 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain M1S28_01680 PF02913 FAD linked oxidases, C-terminal domain M1S28_01680 PF01565 FAD binding domain M1S28_01690 PF03992 Antibiotic biosynthesis monooxygenase M1S28_01695 PF02525 Flavodoxin-like fold M1S28_01705 PF07690 Major Facilitator Superfamily M1S28_01710 PF12805 FUSC-like inner membrane protein yccS M1S28_01715 PF00080 Copper/zinc superoxide dismutase (SODC) M1S28_01720 PF01594 AI-2E family transporter M1S28_01725 PF13614 AAA domain M1S28_01755 PF00324 Amino acid permease M1S28_01760 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase M1S28_01760 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain M1S28_01765 PF00202 Aminotransferase class-III M1S28_01770 PF04958 Arginine N-succinyltransferase beta subunit M1S28_01775 PF00171 Aldehyde dehydrogenase family M1S28_01780 PF04996 Succinylarginine dihydrolase M1S28_01785 PF04952 Succinylglutamate desuccinylase / Aspartoacylase family M1S28_01800 PF00082 Subtilase family M1S28_01800 PF05922 Peptidase inhibitor I9 M1S28_01815 PF03466 LysR substrate binding domain M1S28_01815 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M1S28_01820 PF00892 EamA-like transporter family M1S28_01830 PF02092 Glycyl-tRNA synthetase beta subunit M1S28_01830 PF05746 DALR anticodon binding domain M1S28_01835 PF02091 Glycyl-tRNA synthetase alpha subunit M1S28_01860 PF00571 CBS domain M1S28_01865 PF04024 PspC domain M1S28_01875 PF02771 Acyl-CoA dehydrogenase, N-terminal domain M1S28_01875 PF12806 Acetyl-CoA dehydrogenase C-terminal like M1S28_01875 PF00441 Acyl-CoA dehydrogenase, C-terminal domain M1S28_01875 PF02770 Acyl-CoA dehydrogenase, middle domain M1S28_01885 PF18317 Shikimate 5'-dehydrogenase C-terminal domain M1S28_01885 PF01488 Shikimate / quinate 5-dehydrogenase M1S28_01885 PF08501 Shikimate dehydrogenase substrate binding domain M1S28_01890 PF01218 Coproporphyrinogen III oxidase M1S28_01895 PF00925 GTP cyclohydrolase II M1S28_01900 PF02780 Transketolase, C-terminal domain M1S28_01900 PF02779 Transketolase, pyrimidine binding domain M1S28_01900 PF13292 1-deoxy-D-xylulose-5-phosphate synthase M1S28_01905 PF00459 Inositol monophosphatase family M1S28_01910 PF00271 Helicase conserved C-terminal domain M1S28_01910 PF12343 Cold shock protein DEAD box A M1S28_01910 PF00270 DEAD/DEAH box helicase M1S28_01910 PF03880 DbpA RNA binding domain M1S28_01920 PF00005 ABC transporter M1S28_01925 PF02405 Permease MlaE M1S28_01935 PF05494 MlaC protein M1S28_01945 PF01544 CorA-like Mg2+ transporter protein M1S28_01950 PF03641 Possible lysine decarboxylase M1S28_01955 PF00293 NUDIX domain M1S28_01960 PF00156 Phosphoribosyl transferase domain M1S28_01965 PF17191 RecG wedge domain M1S28_01965 PF00271 Helicase conserved C-terminal domain M1S28_01965 PF00270 DEAD/DEAH box helicase M1S28_01980 PF01553 Acyltransferase M1S28_01990 PF00375 Sodium:dicarboxylate symporter family M1S28_02000 PF01926 50S ribosome-binding GTPase M1S28_02005 PF02082 Transcriptional regulator M1S28_02010 PF00175 Oxidoreductase NAD-binding domain M1S28_02010 PF00042 Globin M1S28_02010 PF00970 Oxidoreductase FAD-binding domain M1S28_02015 PF05872 Bacterial protein of unknown function (DUF853) M1S28_02020 PF01053 Cys/Met metabolism PLP-dependent enzyme M1S28_02025 PF00117 Glutamine amidotransferase class-I M1S28_02030 PF00338 Ribosomal protein S10p/S20e M1S28_02035 PF00297 Ribosomal protein L3 M1S28_02040 PF00573 Ribosomal protein L4/L1 family M1S28_02045 PF00276 Ribosomal protein L23 M1S28_02050 PF03947 Ribosomal Proteins L2, C-terminal domain M1S28_02050 PF00181 Ribosomal Proteins L2, RNA binding domain M1S28_02055 PF00203 Ribosomal protein S19 M1S28_02060 PF00237 Ribosomal protein L22p/L17e M1S28_02070 PF00252 Ribosomal protein L16p/L10e M1S28_02075 PF00831 Ribosomal L29 protein M1S28_02080 PF00366 Ribosomal protein S17 M1S28_02085 PF00238 Ribosomal protein L14p/L23e M1S28_02090 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 M1S28_02090 PF00467 KOW motif M1S28_02095 PF00673 ribosomal L5P family C-terminus M1S28_02095 PF00281 Ribosomal protein L5 M1S28_02100 PF00253 Ribosomal protein S14p/S29e M1S28_02105 PF00410 Ribosomal protein S8 M1S28_02110 PF00347 Ribosomal protein L6 M1S28_02115 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast M1S28_02120 PF00333 Ribosomal protein S5, N-terminal domain M1S28_02120 PF03719 Ribosomal protein S5, C-terminal domain M1S28_02125 PF00327 Ribosomal protein L30p/L7e M1S28_02130 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A M1S28_02135 PF00344 SecY translocase M1S28_02140 PF00444 Ribosomal protein L36 M1S28_02145 PF00416 Ribosomal protein S13/S18 M1S28_02150 PF00411 Ribosomal protein S11 M1S28_02155 PF01479 S4 domain M1S28_02155 PF00163 Ribosomal protein S4/S9 N-terminal domain M1S28_02160 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain M1S28_02160 PF01000 RNA polymerase Rpb3/RpoA insert domain M1S28_02160 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain M1S28_02165 PF01196 Ribosomal protein L17 M1S28_02170 PF00743 Flavin-binding monooxygenase-like M1S28_02175 PF00441 Acyl-CoA dehydrogenase, C-terminal domain M1S28_02175 PF02770 Acyl-CoA dehydrogenase, middle domain M1S28_02175 PF02771 Acyl-CoA dehydrogenase, N-terminal domain M1S28_02180 PF03937 Flavinator of succinate dehydrogenase M1S28_02210 PF09526 Probable metal-binding protein (DUF2387) M1S28_02215 PF01432 Peptidase family M3 M1S28_02220 PF17876 Cold shock domain M1S28_02220 PF08461 Ribonuclease R winged-helix domain M1S28_02220 PF08206 Ribonuclease B OB domain M1S28_02220 PF00575 S1 RNA binding domain M1S28_02220 PF00773 RNB domain M1S28_02260 PF01557 Fumarylacetoacetate (FAA) hydrolase family M1S28_02265 PF12833 Helix-turn-helix domain M1S28_02270 PF00892 EamA-like transporter family M1S28_02275 PF03631 Virulence factor BrkB M1S28_02280 PF03358 NADPH-dependent FMN reductase M1S28_02305 PF02130 Uncharacterized protein family UPF0054 M1S28_02310 PF02562 PhoH-like protein M1S28_02315 PF04055 Radical SAM superfamily M1S28_02315 PF01938 TRAM domain M1S28_02315 PF00919 Uncharacterized protein family UPF0004 M1S28_02320 PF01551 Peptidase family M23 M1S28_02320 PF10145 Phage-related minor tail protein M1S28_02320 PF01464 Transglycosylase SLT domain M1S28_02330 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain M1S28_02330 PF00056 lactate/malate dehydrogenase, NAD binding domain M1S28_02350 PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ M1S28_02355 PF01066 CDP-alcohol phosphatidyltransferase M1S28_02400 PF00441 Acyl-CoA dehydrogenase, C-terminal domain M1S28_02400 PF02770 Acyl-CoA dehydrogenase, middle domain M1S28_02400 PF02771 Acyl-CoA dehydrogenase, N-terminal domain M1S28_02405 PF17932 Tetracyclin repressor-like, C-terminal domain M1S28_02405 PF00440 Bacterial regulatory proteins, tetR family M1S28_02420 PF01039 Carboxyl transferase domain M1S28_02425 PF02770 Acyl-CoA dehydrogenase, middle domain M1S28_02425 PF02771 Acyl-CoA dehydrogenase, N-terminal domain M1S28_02425 PF00441 Acyl-CoA dehydrogenase, C-terminal domain M1S28_02435 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain M1S28_02435 PF00364 Biotin-requiring enzyme M1S28_02435 PF02785 Biotin carboxylase C-terminal domain M1S28_02435 PF00289 Biotin carboxylase, N-terminal domain M1S28_02445 PF04386 Stringent starvation protein B M1S28_02450 PF00043 Glutathione S-transferase, C-terminal domain M1S28_02450 PF13417 Glutathione S-transferase, N-terminal domain M1S28_02455 PF00380 Ribosomal protein S9/S16 M1S28_02460 PF00572 Ribosomal protein L13 M1S28_02465 PF04166 Pyridoxal phosphate biosynthetic protein PdxA M1S28_02470 PF00398 Ribosomal RNA adenine dimethylase M1S28_02475 PF00149 Calcineurin-like phosphoesterase M1S28_02495 PF16360 GTP-binding GTPase Middle Region M1S28_02495 PF13167 GTP-binding GTPase N-terminal M1S28_02495 PF01926 50S ribosome-binding GTPase M1S28_02505 PF13091 PLD-like domain M1S28_02510 PF00149 Calcineurin-like phosphoesterase M1S28_02510 PF10518 TAT (twin-arginine translocation) pathway signal sequence M1S28_02515 PF00691 OmpA family M1S28_02515 PF01389 OmpA-like transmembrane domain M1S28_02520 PF00990 Diguanylate cyclase, GGDEF domain M1S28_02520 PF17152 Periplasmic sensor domain M1S28_02555 PF07992 Pyridine nucleotide-disulphide oxidoreductase M1S28_02555 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain M1S28_02565 PF04273 Putative phosphatase (DUF442) M1S28_02565 PF00753 Metallo-beta-lactamase superfamily M1S28_02570 PF00561 alpha/beta hydrolase fold M1S28_02575 PF00085 Thioredoxin M1S28_02580 PF03061 Thioesterase superfamily M1S28_02590 PF04461 Protein of unknown function (DUF520) M1S28_02600 PF05430 S-adenosyl-L-methionine-dependent methyltransferase M1S28_02600 PF01266 FAD dependent oxidoreductase M1S28_02610 PF03795 YCII-related domain M1S28_02615 PF04279 Intracellular septation protein A M1S28_02620 PF02811 PHP domain M1S28_02625 PF01062 Bestrophin, RFP-TM, chloride channel M1S28_02630 PF04002 RadC-like JAB domain M1S28_02635 PF02441 Flavoprotein M1S28_02635 PF04127 DNA / pantothenate metabolism flavoprotein M1S28_02640 PF07549 SecD/SecF GG Motif M1S28_02640 PF02355 Protein export membrane protein M1S28_02645 PF07549 SecD/SecF GG Motif M1S28_02645 PF13721 SecD export protein N-terminal TM region M1S28_02645 PF02355 Protein export membrane protein M1S28_02650 PF02699 Preprotein translocase subunit M1S28_02655 PF01702 Queuine tRNA-ribosyltransferase M1S28_02670 PF02547 Queuosine biosynthesis protein M1S28_02680 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M1S28_02680 PF00512 His Kinase A (phospho-acceptor) domain M1S28_02680 PF07689 KaiB domain M1S28_02685 PF08335 GlnD PII-uridylyltransferase M1S28_02685 PF03710 Glutamate-ammonia ligase adenylyltransferase M1S28_02690 PF01063 Amino-transferase class IV M1S28_02705 PF01522 Polysaccharide deacetylase M1S28_02710 PF00535 Glycosyl transferase family 2 M1S28_02715 PF13439 Glycosyltransferase Family 4 M1S28_02715 PF00534 Glycosyl transferases group 1 M1S28_02740 PF11380 Stealth protein CR2, conserved region 2 M1S28_02740 PF17101 Stealth protein CR1, conserved region 1 M1S28_02740 PF17102 Stealth protein CR3, conserved region 3 M1S28_02745 PF02938 GAD domain M1S28_02745 PF00152 tRNA synthetases class II (D, K and N) M1S28_02745 PF01336 OB-fold nucleic acid binding domain M1S28_02755 PF07715 TonB-dependent Receptor Plug Domain M1S28_02755 PF00593 TonB dependent receptor M1S28_02775 PF06146 Phosphate-starvation-inducible E M1S28_02780 PF00043 Glutathione S-transferase, C-terminal domain M1S28_02780 PF02798 Glutathione S-transferase, N-terminal domain M1S28_02785 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M1S28_02785 PF03466 LysR substrate binding domain M1S28_02790 PF02770 Acyl-CoA dehydrogenase, middle domain M1S28_02790 PF02771 Acyl-CoA dehydrogenase, N-terminal domain M1S28_02790 PF12806 Acetyl-CoA dehydrogenase C-terminal like M1S28_02790 PF00441 Acyl-CoA dehydrogenase, C-terminal domain M1S28_02795 PF02771 Acyl-CoA dehydrogenase, N-terminal domain M1S28_02795 PF02770 Acyl-CoA dehydrogenase, middle domain M1S28_02795 PF00441 Acyl-CoA dehydrogenase, C-terminal domain M1S28_02795 PF12806 Acetyl-CoA dehydrogenase C-terminal like M1S28_02805 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M1S28_02805 PF00672 HAMP domain M1S28_02805 PF00512 His Kinase A (phospho-acceptor) domain M1S28_02810 PF00072 Response regulator receiver domain M1S28_02810 PF00486 Transcriptional regulatory protein, C terminal M1S28_02815 PF02696 Uncharacterized ACR, YdiU/UPF0061 family M1S28_02835 PF01923 Cobalamin adenosyltransferase M1S28_02840 PF00593 TonB dependent receptor M1S28_02840 PF07715 TonB-dependent Receptor Plug Domain M1S28_02845 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase M1S28_02850 PF00291 Pyridoxal-phosphate dependent enzyme M1S28_02875 PF00290 Tryptophan synthase alpha chain M1S28_02880 PF01039 Carboxyl transferase domain M1S28_02885 PF02875 Mur ligase family, glutamate ligase domain M1S28_02885 PF08245 Mur ligase middle domain M1S28_02900 PF00753 Metallo-beta-lactamase superfamily M1S28_02905 PF00578 AhpC/TSA family M1S28_02905 PF10417 C-terminal domain of 1-Cys peroxiredoxin M1S28_02910 PF07516 SecA Wing and Scaffold domain M1S28_02910 PF02810 SEC-C motif M1S28_02910 PF07517 SecA DEAD-like domain M1S28_02910 PF01043 SecA preprotein cross-linking domain M1S28_02920 PF07690 Major Facilitator Superfamily M1S28_02920 PF00083 Sugar (and other) transporter M1S28_02925 PF03006 Haemolysin-III related M1S28_02950 PF00378 Enoyl-CoA hydratase/isomerase M1S28_02950 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain M1S28_02950 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain M1S28_02955 PF00108 Thiolase, N-terminal domain M1S28_02955 PF02803 Thiolase, C-terminal domain M1S28_02960 PF02311 AraC-like ligand binding domain M1S28_02960 PF12833 Helix-turn-helix domain M1S28_02965 PF02515 CoA-transferase family III M1S28_02970 PF04966 Carbohydrate-selective porin, OprB family M1S28_02975 PF01011 PQQ enzyme repeat M1S28_02980 PF01077 Nitrite and sulphite reductase 4Fe-4S domain M1S28_02980 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain M1S28_02990 PF00893 Small Multidrug Resistance protein M1S28_03000 PF02803 Thiolase, C-terminal domain M1S28_03000 PF00108 Thiolase, N-terminal domain M1S28_03010 PF13505 Outer membrane protein beta-barrel domain M1S28_03010 PF00691 OmpA family M1S28_03020 PF01139 tRNA-splicing ligase RtcB M1S28_03025 PF00324 Amino acid permease M1S28_03030 PF08468 Methyltransferase small domain N-terminal M1S28_03030 PF05175 Methyltransferase small domain M1S28_03035 PF00860 Permease family M1S28_03040 PF00679 Elongation factor G C-terminus M1S28_03040 PF00009 Elongation factor Tu GTP binding domain M1S28_03040 PF03144 Elongation factor Tu domain 2 M1S28_03045 PF01741 Large-conductance mechanosensitive channel, MscL M1S28_03060 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain M1S28_03060 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain M1S28_03060 PF06827 Zinc finger found in FPG and IleRS M1S28_03065 PF02245 Methylpurine-DNA glycosylase (MPG) M1S28_03085 PF00724 NADH:flavin oxidoreductase / NADH oxidase family M1S28_03100 PF10411 Disulfide bond isomerase protein N-terminus M1S28_03100 PF13098 Thioredoxin-like domain M1S28_03105 PF01571 Aminomethyltransferase folate-binding domain M1S28_03115 PF04343 Protein of unknown function, DUF488 M1S28_03120 PF08274 PhnA Zinc-Ribbon M1S28_03120 PF03831 PhnA domain M1S28_03125 PF07411 Domain of unknown function (DUF1508) M1S28_03130 PF04073 Aminoacyl-tRNA editing domain M1S28_03130 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) M1S28_03130 PF03129 Anticodon binding domain M1S28_03135 PF00873 AcrB/AcrD/AcrF family M1S28_03150 PF00072 Response regulator receiver domain M1S28_03155 PF00072 Response regulator receiver domain M1S28_03160 PF01584 CheW-like domain M1S28_03165 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain M1S28_03165 PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term M1S28_03170 PF01584 CheW-like domain M1S28_03170 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M1S28_03170 PF01627 Hpt domain M1S28_03170 PF00072 Response regulator receiver domain M1S28_03180 PF01546 Peptidase family M20/M25/M40 M1S28_03180 PF07687 Peptidase dimerisation domain M1S28_03185 PF08085 Entericidin EcnA/B family M1S28_03195 PF04304 Protein of unknown function (DUF454) M1S28_03200 PF03734 L,D-transpeptidase catalytic domain M1S28_03200 PF17969 L,D-transpeptidase C-terminal domain M1S28_03240 PF00258 Flavodoxin M1S28_03240 PF00667 FAD binding domain M1S28_03240 PF00175 Oxidoreductase NAD-binding domain M1S28_03250 PF12805 FUSC-like inner membrane protein yccS M1S28_03255 PF07690 Major Facilitator Superfamily M1S28_03260 PF00881 Nitroreductase family M1S28_03275 PF01235 Sodium:alanine symporter family M1S28_03280 PF01734 Patatin-like phospholipase M1S28_03285 PF00291 Pyridoxal-phosphate dependent enzyme M1S28_03285 PF13291 ACT domain M1S28_03290 PF05992 SbmA/BacA-like family M1S28_03320 PF02934 GatB/GatE catalytic domain M1S28_03320 PF02637 GatB domain M1S28_03325 PF01425 Amidase M1S28_03330 PF02686 Glu-tRNAGln amidotransferase C subunit M1S28_03340 PF04085 rod shape-determining protein MreC M1S28_03345 PF04093 rod shape-determining protein MreD M1S28_03350 PF02545 Maf-like protein M1S28_03355 PF10150 Ribonuclease E/G family M1S28_03355 PF00575 S1 RNA binding domain M1S28_03365 PF03007 Wax ester synthase-like Acyl-CoA acyltransferase domain M1S28_03365 PF06974 Protein of unknown function (DUF1298) M1S28_03370 PF01507 Phosphoadenosine phosphosulfate reductase family M1S28_03385 PF02525 Flavodoxin-like fold M1S28_03405 PF02673 Bacitracin resistance protein BacA M1S28_03410 PF06719 AraC-type transcriptional regulator N-terminus M1S28_03410 PF12833 Helix-turn-helix domain M1S28_03415 PF02801 Beta-ketoacyl synthase, C-terminal domain M1S28_03415 PF08659 KR domain M1S28_03415 PF00550 Phosphopantetheine attachment site M1S28_03415 PF14765 Polyketide synthase dehydratase M1S28_03415 PF00109 Beta-ketoacyl synthase, N-terminal domain M1S28_03415 PF16197 Ketoacyl-synthetase C-terminal extension M1S28_03415 PF08990 Erythronolide synthase docking M1S28_03415 PF00698 Acyl transferase domain M1S28_03415 PF09277 Erythronolide synthase, docking M1S28_03415 PF08240 Alcohol dehydrogenase GroES-like domain M1S28_03420 PF01965 DJ-1/PfpI family M1S28_03430 PF00324 Amino acid permease M1S28_03435 PF04303 PrpF protein M1S28_03440 PF00348 Polyprenyl synthetase M1S28_03445 PF04237 YjbR M1S28_03450 PF01145 SPFH domain / Band 7 family M1S28_03460 PF01734 Patatin-like phospholipase M1S28_03480 PF08019 Phosphoethanolamine transferase EptA/EptB M1S28_03480 PF00884 Sulfatase M1S28_03485 PF00072 Response regulator receiver domain M1S28_03485 PF00486 Transcriptional regulatory protein, C terminal M1S28_03490 PF00512 His Kinase A (phospho-acceptor) domain M1S28_03490 PF08521 Two-component sensor kinase N-terminal M1S28_03490 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M1S28_03500 PF00909 Ammonium Transporter Family M1S28_03505 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M1S28_03505 PF03466 LysR substrate binding domain M1S28_03525 PF08264 Anticodon-binding domain of tRNA M1S28_03525 PF00133 tRNA synthetases class I (I, L, M and V) M1S28_03525 PF10458 Valyl tRNA synthetase tRNA binding arm M1S28_03545 PF01906 Putative heavy-metal-binding M1S28_03550 PF01906 Putative heavy-metal-binding M1S28_03555 PF02321 Outer membrane efflux protein M1S28_03560 PF00873 AcrB/AcrD/AcrF family M1S28_03565 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion M1S28_03565 PF00529 HlyD membrane-fusion protein of T1SS M1S28_03570 PF01569 PAP2 superfamily M1S28_03580 PF00348 Polyprenyl synthetase M1S28_03590 PF00829 Ribosomal prokaryotic L21 protein M1S28_03595 PF01016 Ribosomal L27 protein M1S28_03600 PF03548 Outer membrane lipoprotein carrier protein LolA M1S28_03610 PF02403 Seryl-tRNA synthetase N-terminal domain M1S28_03610 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) M1S28_03615 PF10414 Sirohaem synthase dimerisation region M1S28_03615 PF14824 Sirohaem biosynthesis protein central M1S28_03615 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases M1S28_03620 PF00588 SpoU rRNA Methylase family M1S28_03625 PF01638 HxlR-like helix-turn-helix M1S28_03630 PF03358 NADPH-dependent FMN reductase M1S28_03635 PF13520 Amino acid permease M1S28_03640 PF00465 Iron-containing alcohol dehydrogenase M1S28_03650 PF03099 Biotin/lipoate A/B protein ligase family M1S28_03655 PF04359 Protein of unknown function (DUF493) M1S28_03660 PF04539 Sigma-70 region 3 M1S28_03660 PF04542 Sigma-70 region 2 M1S28_03660 PF04545 Sigma-70, region 4 M1S28_03660 PF03979 Sigma-70 factor, region 1.1 M1S28_03660 PF00140 Sigma-70 factor, region 1.2 M1S28_03660 PF04546 Sigma-70, non-essential region M1S28_03680 PF00581 Rhodanese-like domain M1S28_03680 PF17773 UPF0176 acylphosphatase like domain M1S28_03690 PF00285 Citrate synthase, C-terminal domain M1S28_03695 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit M1S28_03700 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit M1S28_03705 PF00890 FAD binding domain M1S28_03705 PF02910 Fumarate reductase flavoprotein C-term M1S28_03710 PF13085 2Fe-2S iron-sulfur cluster binding domain M1S28_03725 PF16078 2-oxoglutarate dehydrogenase N-terminus M1S28_03725 PF00676 Dehydrogenase E1 component M1S28_03725 PF16870 2-oxoglutarate dehydrogenase C-terminal M1S28_03725 PF02779 Transketolase, pyrimidine binding domain M1S28_03730 PF00364 Biotin-requiring enzyme M1S28_03730 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) M1S28_03730 PF02817 e3 binding domain M1S28_03735 PF07992 Pyridine nucleotide-disulphide oxidoreductase M1S28_03735 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain M1S28_03740 PF00549 CoA-ligase M1S28_03740 PF08442 ATP-grasp domain M1S28_03745 PF02629 CoA binding domain M1S28_03745 PF00549 CoA-ligase M1S28_03750 PF00579 tRNA synthetases class I (W and Y) M1S28_03755 PF05661 Protein of unknown function (DUF808) M1S28_03760 PF04228 Putative neutral zinc metallopeptidase M1S28_03765 PF00999 Sodium/hydrogen exchanger family M1S28_03780 PF09587 Bacterial capsule synthesis protein PGA_cap M1S28_03790 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain M1S28_03795 PF00582 Universal stress protein family M1S28_03800 PF00132 Bacterial transferase hexapeptide (six repeats) M1S28_03805 PF01272 Transcription elongation factor, GreA/GreB, C-term M1S28_03805 PF03449 Transcription elongation factor, N-terminal M1S28_03810 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain M1S28_03810 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain M1S28_03810 PF02142 MGS-like domain M1S28_03815 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain M1S28_03815 PF00117 Glutamine amidotransferase class-I M1S28_03830 PF01985 CRS1 / YhbY (CRM) domain M1S28_03835 PF01728 FtsJ-like methyltransferase M1S28_03840 PF01434 Peptidase family M41 M1S28_03840 PF17862 AAA+ lid domain M1S28_03840 PF06480 FtsH Extracellular M1S28_03840 PF00004 ATPase family associated with various cellular activities (AAA) M1S28_03845 PF00809 Pterin binding enzyme M1S28_03865 PF16655 PhoD-like phosphatase, N-terminal domain M1S28_03865 PF09423 PhoD-like phosphatase M1S28_03880 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain M1S28_03880 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain M1S28_03895 PF00083 Sugar (and other) transporter M1S28_03900 PF02782 FGGY family of carbohydrate kinases, C-terminal domain M1S28_03900 PF00370 FGGY family of carbohydrate kinases, N-terminal domain M1S28_03905 PF01266 FAD dependent oxidoreductase M1S28_03905 PF16901 C-terminal domain of alpha-glycerophosphate oxidase M1S28_03910 PF00821 Phosphoenolpyruvate carboxykinase C-terminal P-loop domain M1S28_03910 PF17297 Phosphoenolpyruvate carboxykinase N-terminal domain M1S28_03915 PF00781 Diacylglycerol kinase catalytic domain M1S28_03920 PF00149 Calcineurin-like phosphoesterase M1S28_03930 PF00166 Chaperonin 10 Kd subunit M1S28_03935 PF00118 TCP-1/cpn60 chaperonin family M1S28_03940 PF01219 Prokaryotic diacylglycerol kinase M1S28_03950 PF03009 Glycerophosphoryl diester phosphodiesterase family M1S28_03955 PF00873 AcrB/AcrD/AcrF family M1S28_03965 PF01435 Peptidase family M48 M1S28_03970 PF01464 Transglycosylase SLT domain M1S28_03975 PF01171 PP-loop family M1S28_03985 PF00497 Bacterial extracellular solute-binding proteins, family 3 M1S28_03985 PF01464 Transglycosylase SLT domain M1S28_03990 PF01272 Transcription elongation factor, GreA/GreB, C-term M1S28_03990 PF03449 Transcription elongation factor, N-terminal M1S28_04005 PF00550 Phosphopantetheine attachment site M1S28_04005 PF00975 Thioesterase domain M1S28_04005 PF00501 AMP-binding enzyme M1S28_04005 PF13193 AMP-binding enzyme C-terminal domain M1S28_04005 PF00668 Condensation domain M1S28_04035 PF00881 Nitroreductase family M1S28_04050 PF02595 Glycerate kinase family M1S28_04055 PF00384 Molybdopterin oxidoreductase M1S28_04060 PF02634 FdhD/NarQ family M1S28_04065 PF06803 Protein of unknown function (DUF1232) M1S28_04070 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain M1S28_04070 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain M1S28_04070 PF11890 Domain of unknown function (DUF3410) M1S28_04075 PF00152 tRNA synthetases class II (D, K and N) M1S28_04085 PF18073 Rubredoxin metal binding domain M1S28_04090 PF00324 Amino acid permease M1S28_04100 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain M1S28_04100 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain M1S28_04105 PF01678 Diaminopimelate epimerase M1S28_04110 PF01810 LysE type translocator M1S28_04115 PF02899 Phage integrase, N-terminal SAM-like domain M1S28_04115 PF00589 Phage integrase family M1S28_04120 PF01012 Electron transfer flavoprotein domain M1S28_04125 PF01012 Electron transfer flavoprotein domain M1S28_04125 PF00766 Electron transfer flavoprotein FAD-binding domain M1S28_04130 PF03989 DNA gyrase C-terminal domain, beta-propeller M1S28_04130 PF00521 DNA gyrase/topoisomerase IV, subunit A M1S28_04145 PF00535 Glycosyl transferase family 2 M1S28_04165 PF13533 Biotin-lipoyl like M1S28_04175 PF00266 Aminotransferase class-V M1S28_04190 PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 M1S28_04200 PF02687 FtsX-like permease family M1S28_04200 PF12704 MacB-like periplasmic core domain M1S28_04205 PF00005 ABC transporter M1S28_04210 PF03772 Competence protein M1S28_04210 PF13567 Domain of unknown function (DUF4131) M1S28_04210 PF00753 Metallo-beta-lactamase superfamily M1S28_04220 PF01343 Peptidase family S49 M1S28_04220 PF06965 Na+/H+ antiporter 1 M1S28_04225 PF12697 Alpha/beta hydrolase family M1S28_04235 PF00586 AIR synthase related protein, N-terminal domain M1S28_04235 PF02769 AIR synthase related protein, C-terminal domain M1S28_04240 PF01594 AI-2E family transporter M1S28_04245 PF00308 Bacterial dnaA protein M1S28_04245 PF08299 Bacterial dnaA protein helix-turn-helix M1S28_04245 PF11638 DnaA N-terminal domain M1S28_04275 PF00588 SpoU rRNA Methylase family M1S28_04275 PF08032 RNA 2'-O ribose methyltransferase substrate binding M1S28_04280 PF00316 Fructose-1-6-bisphosphatase, N-terminal domain M1S28_04290 PF00691 OmpA family M1S28_04295 PF07676 WD40-like Beta Propeller Repeat M1S28_04295 PF04052 TolB amino-terminal domain M1S28_04305 PF02472 Biopolymer transport protein ExbD/TolR M1S28_04310 PF01618 MotA/TolQ/ExbB proton channel family M1S28_04315 PF03061 Thioesterase superfamily M1S28_04320 PF01546 Peptidase family M20/M25/M40 M1S28_04320 PF07687 Peptidase dimerisation domain M1S28_04325 PF05496 Holliday junction DNA helicase RuvB P-loop domain M1S28_04325 PF05491 RuvB C-terminal winged helix domain M1S28_04325 PF17864 RuvB AAA lid domain M1S28_04330 PF07499 RuvA, C-terminal domain M1S28_04330 PF01330 RuvA N terminal domain M1S28_04335 PF01966 HD domain M1S28_04340 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain M1S28_04340 PF02769 AIR synthase related protein, C-terminal domain M1S28_04340 PF18076 Formylglycinamide ribonucleotide amidotransferase N-terminal M1S28_04345 PF07690 Major Facilitator Superfamily M1S28_04350 PF01784 NIF3 (NGG1p interacting factor 3) M1S28_04355 PF00378 Enoyl-CoA hydratase/isomerase M1S28_04360 PF01467 Cytidylyltransferase-like M1S28_04360 PF00293 NUDIX domain M1S28_04370 PF00578 AhpC/TSA family M1S28_04385 PF06508 Queuosine biosynthesis protein QueC M1S28_04395 PF00132 Bacterial transferase hexapeptide (six repeats) M1S28_04395 PF14602 Hexapeptide repeat of succinyl-transferase M1S28_04395 PF14805 Tetrahydrodipicolinate N-succinyltransferase N-terminal M1S28_04405 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M1S28_04405 PF03466 LysR substrate binding domain M1S28_04410 PF12857 TOBE-like domain M1S28_04410 PF00005 ABC transporter M1S28_04415 PF00528 Binding-protein-dependent transport system inner membrane component M1S28_04420 PF00528 Binding-protein-dependent transport system inner membrane component M1S28_04435 PF01063 Amino-transferase class IV M1S28_04440 PF02618 YceG-like family M1S28_04445 PF02223 Thymidylate kinase M1S28_04455 PF02910 Fumarate reductase flavoprotein C-term M1S28_04455 PF00890 FAD binding domain M1S28_04460 PF13180 PDZ domain M1S28_04470 PF00009 Elongation factor Tu GTP binding domain M1S28_04470 PF03144 Elongation factor Tu domain 2 M1S28_04470 PF06421 GTP-binding protein LepA C-terminus M1S28_04470 PF00679 Elongation factor G C-terminus M1S28_04475 PF10502 Signal peptidase, peptidase S26 M1S28_04485 PF00035 Double-stranded RNA binding motif M1S28_04485 PF14622 Ribonuclease-III-like M1S28_04490 PF07650 KH domain M1S28_04490 PF01926 50S ribosome-binding GTPase M1S28_04500 PF02565 Recombination protein O C terminal M1S28_04500 PF11967 Recombination protein O N terminal M1S28_04505 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ M1S28_04510 PF06175 tRNA-(MS[2]IO[6]A)-hydroxylase (MiaE) M1S28_04515 PF00106 short chain dehydrogenase M1S28_04545 PF00155 Aminotransferase class I and II M1S28_04555 PF17151 Periplasmic sensor domain M1S28_04555 PF00990 Diguanylate cyclase, GGDEF domain M1S28_04565 PF02151 UvrB/uvrC motif M1S28_04565 PF04851 Type III restriction enzyme, res subunit M1S28_04565 PF12344 Ultra-violet resistance protein B M1S28_04565 PF17757 UvrB interaction domain M1S28_04565 PF00271 Helicase conserved C-terminal domain M1S28_04575 PF00892 EamA-like transporter family M1S28_04580 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain M1S28_04580 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain M1S28_04595 PF01018 GTP1/OBG M1S28_04595 PF01926 50S ribosome-binding GTPase M1S28_04600 PF00696 Amino acid kinase family M1S28_04600 PF01472 PUA domain M1S28_04610 PF07759 Protein of unknown function (DUF1615) M1S28_04615 PF01207 Dihydrouridine synthase (Dus) M1S28_04620 PF03060 Nitronate monooxygenase M1S28_04635 PF02350 UDP-N-acetylglucosamine 2-epimerase M1S28_04665 PF00875 DNA photolyase M1S28_04665 PF03441 FAD binding domain of DNA photolyase M1S28_04670 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase M1S28_04675 PF07992 Pyridine nucleotide-disulphide oxidoreductase M1S28_04680 PF07943 Penicillin-binding protein 5, C-terminal domain M1S28_04680 PF00768 D-alanyl-D-alanine carboxypeptidase M1S28_04690 PF03971 Monomeric isocitrate dehydrogenase M1S28_04695 PF00849 RNA pseudouridylate synthase M1S28_04700 PF00180 Isocitrate/isopropylmalate dehydrogenase M1S28_04720 PF06779 Uncharacterised MFS-type transporter YbfB M1S28_04725 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M1S28_04725 PF03466 LysR substrate binding domain M1S28_04730 PF00375 Sodium:dicarboxylate symporter family M1S28_04735 PF02567 Phenazine biosynthesis-like protein M1S28_04740 PF00675 Insulinase (Peptidase family M16) M1S28_04740 PF05193 Peptidase M16 inactive domain M1S28_04765 PF02581 Thiamine monophosphate synthase M1S28_04770 PF00202 Aminotransferase class-III M1S28_04780 PF00849 RNA pseudouridylate synthase M1S28_04785 PF12137 RNA polymerase recycling family C-terminal M1S28_04785 PF00271 Helicase conserved C-terminal domain M1S28_04785 PF00176 SNF2 family N-terminal domain M1S28_04785 PF18337 RapA N-terminal Tudor like domain M1S28_04785 PF18339 RapA N-terminal Tudor like domain 1 M1S28_04795 PF00440 Bacterial regulatory proteins, tetR family M1S28_04800 PF00175 Oxidoreductase NAD-binding domain M1S28_04800 PF00970 Oxidoreductase FAD-binding domain M1S28_04800 PF00111 2Fe-2S iron-sulfur cluster binding domain M1S28_04805 PF00487 Fatty acid desaturase M1S28_04815 PF00440 Bacterial regulatory proteins, tetR family M1S28_04815 PF17754 MftR C-terminal domain M1S28_04825 PF00202 Aminotransferase class-III M1S28_04830 PF00282 Pyridoxal-dependent decarboxylase conserved domain M1S28_04835 PF00171 Aldehyde dehydrogenase family M1S28_04840 PF01037 Lrp/AsnC ligand binding domain M1S28_04845 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain M1S28_04845 PF00205 Thiamine pyrophosphate enzyme, central domain M1S28_04845 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain M1S28_04850 PF00324 Amino acid permease M1S28_04855 PF12849 PBP superfamily domain M1S28_04860 PF00528 Binding-protein-dependent transport system inner membrane component M1S28_04865 PF00528 Binding-protein-dependent transport system inner membrane component M1S28_04870 PF00005 ABC transporter M1S28_04875 PF01343 Peptidase family S49 M1S28_04875 PF08496 Peptidase family S49 N-terminal M1S28_04890 PF08328 Adenylosuccinate lyase C-terminal M1S28_04890 PF00206 Lyase M1S28_04895 PF04356 Protein of unknown function (DUF489) M1S28_04905 PF13344 Haloacid dehalogenase-like hydrolase M1S28_04905 PF00293 NUDIX domain M1S28_04910 PF00132 Bacterial transferase hexapeptide (six repeats) M1S28_04915 PF07943 Penicillin-binding protein 5, C-terminal domain M1S28_04915 PF00768 D-alanyl-D-alanine carboxypeptidase M1S28_04930 PF01975 Survival protein SurE M1S28_04935 PF01476 LysM domain M1S28_04935 PF01551 Peptidase family M23 M1S28_04940 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M1S28_04940 PF03466 LysR substrate binding domain M1S28_04945 PF13654 AAA domain M1S28_04945 PF05362 Lon protease (S16) C-terminal proteolytic domain M1S28_04950 PF07690 Major Facilitator Superfamily M1S28_04955 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily M1S28_04960 PF13593 SBF-like CPA transporter family (DUF4137) M1S28_04965 PF01197 Ribosomal protein L31 M1S28_04980 PF04055 Radical SAM superfamily M1S28_04985 PF08207 Elongation factor P (EF-P) KOW-like domain M1S28_04985 PF01132 Elongation factor P (EF-P) OB domain M1S28_04985 PF09285 Elongation factor P, C-terminal M1S28_04990 PF13722 5TM C-terminal transporter carbon starvation CstA M1S28_04990 PF02554 Carbon starvation protein CstA M1S28_04995 PF04328 Selenoprotein, putative M1S28_05030 PF13556 PucR C-terminal helix-turn-helix domain M1S28_05030 PF17853 GGDEF-like domain M1S28_05030 PF06018 CodY GAF-like domain M1S28_05045 PF00171 Aldehyde dehydrogenase family M1S28_05050 PF00324 Amino acid permease M1S28_05055 PF03466 LysR substrate binding domain M1S28_05055 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M1S28_05060 PF02028 BCCT, betaine/carnitine/choline family transporter M1S28_05065 PF02028 BCCT, betaine/carnitine/choline family transporter M1S28_05070 PF00355 Rieske [2Fe-2S] domain M1S28_05070 PF00848 Ring hydroxylating alpha subunit (catalytic domain) M1S28_05075 PF00171 Aldehyde dehydrogenase family M1S28_05085 PF07992 Pyridine nucleotide-disulphide oxidoreductase M1S28_05085 PF18113 Rubredoxin binding C-terminal domain M1S28_05090 PF01266 FAD dependent oxidoreductase M1S28_05090 PF05430 S-adenosyl-L-methionine-dependent methyltransferase M1S28_05110 PF00892 EamA-like transporter family M1S28_05120 PF02604 Antitoxin Phd_YefM, type II toxin-antitoxin system M1S28_05125 PF00083 Sugar (and other) transporter M1S28_05130 PF13378 Enolase C-terminal domain-like M1S28_05130 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain M1S28_05135 PF14765 Polyketide synthase dehydratase M1S28_05135 PF00550 Phosphopantetheine attachment site M1S28_05135 PF00109 Beta-ketoacyl synthase, N-terminal domain M1S28_05135 PF00698 Acyl transferase domain M1S28_05135 PF08240 Alcohol dehydrogenase GroES-like domain M1S28_05135 PF08990 Erythronolide synthase docking M1S28_05135 PF08659 KR domain M1S28_05135 PF02801 Beta-ketoacyl synthase, C-terminal domain M1S28_05135 PF09277 Erythronolide synthase, docking M1S28_05135 PF16197 Ketoacyl-synthetase C-terminal extension M1S28_05140 PF00440 Bacterial regulatory proteins, tetR family M1S28_05160 PF02678 Pirin M1S28_05160 PF17954 Quercetinase C-terminal cupin domain M1S28_05170 PF13309 HTH domain M1S28_05170 PF08348 YheO-like PAS domain M1S28_05180 PF00668 Condensation domain M1S28_05180 PF00550 Phosphopantetheine attachment site M1S28_05180 PF13193 AMP-binding enzyme C-terminal domain M1S28_05180 PF00501 AMP-binding enzyme M1S28_05185 PF00501 AMP-binding enzyme M1S28_05185 PF00550 Phosphopantetheine attachment site M1S28_05185 PF00975 Thioesterase domain M1S28_05185 PF13193 AMP-binding enzyme C-terminal domain M1S28_05185 PF00668 Condensation domain M1S28_05190 PF01032 FecCD transport family M1S28_05195 PF01032 FecCD transport family M1S28_05200 PF00005 ABC transporter M1S28_05205 PF01497 Periplasmic binding protein M1S28_05210 PF07715 TonB-dependent Receptor Plug Domain M1S28_05210 PF00593 TonB dependent receptor M1S28_05215 PF13434 L-lysine 6-monooxygenase (NADPH-requiring) M1S28_05220 PF00501 AMP-binding enzyme M1S28_05220 PF00668 Condensation domain M1S28_05220 PF00550 Phosphopantetheine attachment site M1S28_05225 PF00501 AMP-binding enzyme M1S28_05225 PF13193 AMP-binding enzyme C-terminal domain M1S28_05230 PF00857 Isochorismatase family M1S28_05230 PF00550 Phosphopantetheine attachment site M1S28_05235 PF00282 Pyridoxal-dependent decarboxylase conserved domain M1S28_05245 PF00005 ABC transporter M1S28_05250 PF00005 ABC transporter M1S28_05255 PF00975 Thioesterase domain M1S28_05265 PF00425 chorismate binding enzyme M1S28_05275 PF01208 Uroporphyrinogen decarboxylase (URO-D) M1S28_05280 PF05675 Protein of unknown function (DUF817) M1S28_05295 PF00144 Beta-lactamase M1S28_05305 PF01227 GTP cyclohydrolase I M1S28_05310 PF00111 2Fe-2S iron-sulfur cluster binding domain M1S28_05310 PF01799 [2Fe-2S] binding domain M1S28_05315 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain M1S28_05315 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase M1S28_05330 PF00218 Indole-3-glycerol phosphate synthase M1S28_05335 PF02885 Glycosyl transferase family, helical bundle domain M1S28_05335 PF00591 Glycosyl transferase family, a/b domain M1S28_05340 PF07715 TonB-dependent Receptor Plug Domain M1S28_05340 PF00593 TonB dependent receptor M1S28_05345 PF11838 ERAP1-like C-terminal domain M1S28_05345 PF01433 Peptidase family M1 domain M1S28_05350 PF00117 Glutamine amidotransferase class-I M1S28_05360 PF00854 POT family M1S28_05365 PF03951 Glutamine synthetase, beta-Grasp domain M1S28_05365 PF00120 Glutamine synthetase, catalytic domain M1S28_05370 PF04345 Chorismate lyase M1S28_05375 PF01040 UbiA prenyltransferase family M1S28_05410 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain M1S28_05410 PF02777 Iron/manganese superoxide dismutases, C-terminal domain M1S28_05415 PF01784 NIF3 (NGG1p interacting factor 3) M1S28_05420 PF13180 PDZ domain M1S28_05425 PF01743 Poly A polymerase head domain M1S28_05425 PF12627 Probable RNA and SrmB- binding site of polymerase A M1S28_05430 PF00390 Malic enzyme, N-terminal domain M1S28_05430 PF03949 Malic enzyme, NAD binding domain M1S28_05430 PF01515 Phosphate acetyl/butaryl transferase M1S28_05435 PF00563 EAL domain M1S28_05435 PF03707 Bacterial signalling protein N terminal repeat M1S28_05435 PF00990 Diguanylate cyclase, GGDEF domain M1S28_05440 PF04452 RNA methyltransferase M1S28_05445 PF02219 Methylenetetrahydrofolate reductase M1S28_05450 PF05221 S-adenosyl-L-homocysteine hydrolase M1S28_05450 PF00670 S-adenosyl-L-homocysteine hydrolase, NAD binding domain M1S28_05465 PF09317 Domain of unknown function (DUF1974) M1S28_05465 PF00441 Acyl-CoA dehydrogenase, C-terminal domain M1S28_05465 PF02771 Acyl-CoA dehydrogenase, N-terminal domain M1S28_05470 PF04055 Radical SAM superfamily M1S28_05475 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain M1S28_05475 PF07992 Pyridine nucleotide-disulphide oxidoreductase M1S28_05485 PF07690 Major Facilitator Superfamily M1S28_05495 PF00557 Metallopeptidase family M24 M1S28_05500 PF00318 Ribosomal protein S2 M1S28_05505 PF00889 Elongation factor TS M1S28_05515 PF12833 Helix-turn-helix domain M1S28_05535 PF03330 Lytic transglycolase M1S28_05535 PF05036 Sporulation related domain M1S28_05540 PF13406 Transglycosylase SLT domain M1S28_05545 PF01098 Cell cycle protein M1S28_05555 PF14489 QueF-like protein M1S28_05555 PF14819 Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term M1S28_05560 PF01061 ABC-2 type transporter M1S28_05565 PF00005 ABC transporter M1S28_05595 PF00464 Serine hydroxymethyltransferase M1S28_05600 PF02321 Outer membrane efflux protein M1S28_05605 PF00873 AcrB/AcrD/AcrF family M1S28_05610 PF13533 Biotin-lipoyl like M1S28_05615 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M1S28_05615 PF03466 LysR substrate binding domain M1S28_05620 PF00497 Bacterial extracellular solute-binding proteins, family 3 M1S28_05625 PF00528 Binding-protein-dependent transport system inner membrane component M1S28_05630 PF00528 Binding-protein-dependent transport system inner membrane component M1S28_05635 PF00005 ABC transporter M1S28_05640 PF00893 Small Multidrug Resistance protein M1S28_05645 PF00037 4Fe-4S binding domain M1S28_05650 PF01136 Peptidase family U32 M1S28_05650 PF16325 Peptidase family U32 C-terminal domain M1S28_05655 PF00155 Aminotransferase class I and II M1S28_05655 PF00392 Bacterial regulatory proteins, gntR family M1S28_05660 PF02567 Phenazine biosynthesis-like protein M1S28_05665 PF00175 Oxidoreductase NAD-binding domain M1S28_05665 PF00970 Oxidoreductase FAD-binding domain M1S28_05670 PF01980 tRNA-methyltransferase O M1S28_05670 PF18389 TrmO C-terminal domain M1S28_05680 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain M1S28_05680 PF00437 Type II/IV secretion system protein M1S28_05690 PF00486 Transcriptional regulatory protein, C terminal M1S28_05690 PF00072 Response regulator receiver domain M1S28_05695 PF00512 His Kinase A (phospho-acceptor) domain M1S28_05695 PF08521 Two-component sensor kinase N-terminal M1S28_05695 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M1S28_05705 PF00293 NUDIX domain M1S28_05715 PF14814 Bifunctional transglycosylase second domain M1S28_05715 PF00905 Penicillin binding protein transpeptidase domain M1S28_05715 PF00912 Transglycosylase M1S28_05720 PF01513 ATP-NAD kinase M1S28_05725 PF07023 Protein of unknown function (DUF1315) M1S28_05730 PF00591 Glycosyl transferase family, a/b domain M1S28_05730 PF02885 Glycosyl transferase family, helical bundle domain M1S28_05735 PF00375 Sodium:dicarboxylate symporter family M1S28_05740 PF02770 Acyl-CoA dehydrogenase, middle domain M1S28_05740 PF00441 Acyl-CoA dehydrogenase, C-terminal domain M1S28_05740 PF02771 Acyl-CoA dehydrogenase, N-terminal domain M1S28_05745 PF00756 Putative esterase M1S28_05750 PF01817 Chorismate mutase type II M1S28_05750 PF01842 ACT domain M1S28_05750 PF00800 Prephenate dehydratase M1S28_05755 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) M1S28_05765 PF07687 Peptidase dimerisation domain M1S28_05765 PF01546 Peptidase family M20/M25/M40 M1S28_05770 PF12706 Beta-lactamase superfamily domain M1S28_05780 PF03883 Peroxide stress protein YaaA M1S28_05790 PF05690 Thiazole biosynthesis protein ThiG M1S28_05800 PF04241 Protein of unknown function (DUF423) M1S28_05805 PF04545 Sigma-70, region 4 M1S28_05805 PF04542 Sigma-70 region 2 M1S28_05805 PF00140 Sigma-70 factor, region 1.2 M1S28_05820 PF00313 'Cold-shock' DNA-binding domain M1S28_05825 PF00270 DEAD/DEAH box helicase M1S28_05825 PF00271 Helicase conserved C-terminal domain M1S28_05835 PF00881 Nitroreductase family M1S28_05840 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus M1S28_05840 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus M1S28_05850 PF00589 Phage integrase family M1S28_06185 PF01180 Dihydroorotate dehydrogenase M1S28_06190 PF02674 Colicin V production protein M1S28_06195 PF00156 Phosphoribosyl transferase domain M1S28_06210 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain M1S28_06210 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain M1S28_06215 PF01435 Peptidase family M48 M1S28_06220 PF09424 Yqey-like protein M1S28_06225 PF01165 Ribosomal protein S21 M1S28_06230 PF00814 Glycoprotease family M1S28_06250 PF00069 Protein kinase domain M1S28_06275 PF03466 LysR substrate binding domain M1S28_06275 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M1S28_06280 PF00202 Aminotransferase class-III M1S28_06285 PF00171 Aldehyde dehydrogenase family M1S28_06290 PF00324 Amino acid permease M1S28_06320 PF04076 Bacterial OB fold (BOF) protein M1S28_06345 PF00561 alpha/beta hydrolase fold M1S28_06350 PF03616 Sodium/glutamate symporter M1S28_06360 PF07729 FCD domain M1S28_06360 PF00392 Bacterial regulatory proteins, gntR family M1S28_06395 PF13610 DDE domain M1S28_06405 PF01636 Phosphotransferase enzyme family M1S28_06410 PF13610 DDE domain M1S28_06425 PF00132 Bacterial transferase hexapeptide (six repeats) M1S28_06435 PF00893 Small Multidrug Resistance protein M1S28_06440 PF00809 Pterin binding enzyme M1S28_06455 PF07091 Ribosomal RNA methyltransferase (FmrO) M1S28_06470 PF00005 ABC transporter M1S28_06470 PF12848 ABC transporter M1S28_06475 PF01636 Phosphotransferase enzyme family M1S28_06485 PF13007 Transposase C of IS166 homeodomain M1S28_06485 PF13005 zinc-finger binding domain of transposase IS66 M1S28_06485 PF13817 IS66 C-terminal element M1S28_06485 PF03050 Transposase IS66 family M1S28_06490 PF13610 DDE domain M1S28_06500 PF01292 Prokaryotic cytochrome b561 M1S28_06520 PF12697 Alpha/beta hydrolase family M1S28_06525 PF01613 Flavin reductase like domain M1S28_06530 PF00296 Luciferase-like monooxygenase M1S28_06535 PF00171 Aldehyde dehydrogenase family M1S28_06545 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin M1S28_06555 PF00171 Aldehyde dehydrogenase family M1S28_06560 PF02627 Carboxymuconolactone decarboxylase family M1S28_06565 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M1S28_06565 PF03466 LysR substrate binding domain M1S28_06570 PF02525 Flavodoxin-like fold M1S28_06575 PF09339 IclR helix-turn-helix domain M1S28_06575 PF01614 Bacterial transcriptional regulator M1S28_06580 PF01494 FAD binding domain M1S28_06585 PF07702 UTRA domain M1S28_06585 PF00392 Bacterial regulatory proteins, gntR family M1S28_06595 PF00005 ABC transporter M1S28_06595 PF08402 TOBE domain M1S28_06600 PF00528 Binding-protein-dependent transport system inner membrane component M1S28_06605 PF01266 FAD dependent oxidoreductase M1S28_06610 PF00266 Aminotransferase class-V M1S28_06615 PF13419 Haloacid dehalogenase-like hydrolase M1S28_06620 PF07690 Major Facilitator Superfamily M1S28_06625 PF02771 Acyl-CoA dehydrogenase, N-terminal domain M1S28_06625 PF00441 Acyl-CoA dehydrogenase, C-terminal domain M1S28_06625 PF02770 Acyl-CoA dehydrogenase, middle domain M1S28_06630 PF02515 CoA-transferase family III M1S28_06635 PF09339 IclR helix-turn-helix domain M1S28_06640 PF00378 Enoyl-CoA hydratase/isomerase M1S28_06645 PF03060 Nitronate monooxygenase M1S28_06650 PF07690 Major Facilitator Superfamily M1S28_06655 PF09339 IclR helix-turn-helix domain M1S28_06660 PF00108 Thiolase, N-terminal domain M1S28_06660 PF02803 Thiolase, C-terminal domain M1S28_06665 PF18321 3-hydroxybutyryl-CoA dehydrogenase reduced Rossmann-fold domain M1S28_06665 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain M1S28_06665 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain M1S28_06675 PF00378 Enoyl-CoA hydratase/isomerase M1S28_06680 PF02771 Acyl-CoA dehydrogenase, N-terminal domain M1S28_06680 PF00441 Acyl-CoA dehydrogenase, C-terminal domain M1S28_06680 PF02770 Acyl-CoA dehydrogenase, middle domain M1S28_06685 PF07690 Major Facilitator Superfamily M1S28_06690 PF01144 Coenzyme A transferase M1S28_06695 PF01144 Coenzyme A transferase M1S28_06705 PF07690 Major Facilitator Superfamily M1S28_06715 PF12806 Acetyl-CoA dehydrogenase C-terminal like M1S28_06715 PF02770 Acyl-CoA dehydrogenase, middle domain M1S28_06715 PF00441 Acyl-CoA dehydrogenase, C-terminal domain M1S28_06715 PF02771 Acyl-CoA dehydrogenase, N-terminal domain M1S28_06730 PF03466 LysR substrate binding domain M1S28_06730 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M1S28_06735 PF00682 HMGL-like M1S28_06740 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain M1S28_06740 PF00364 Biotin-requiring enzyme M1S28_06740 PF18140 Propionyl-coenzyme A carboxylase BT domain M1S28_06740 PF00289 Biotin carboxylase, N-terminal domain M1S28_06740 PF02785 Biotin carboxylase C-terminal domain M1S28_06745 PF00378 Enoyl-CoA hydratase/isomerase M1S28_06750 PF01039 Carboxyl transferase domain M1S28_06755 PF02771 Acyl-CoA dehydrogenase, N-terminal domain M1S28_06755 PF02770 Acyl-CoA dehydrogenase, middle domain M1S28_06755 PF00441 Acyl-CoA dehydrogenase, C-terminal domain M1S28_06760 PF00440 Bacterial regulatory proteins, tetR family M1S28_06765 PF13193 AMP-binding enzyme C-terminal domain M1S28_06765 PF00501 AMP-binding enzyme M1S28_06790 PF03466 LysR substrate binding domain M1S28_06790 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M1S28_06825 PF18146 Damage-inducible protein CinA KH domain M1S28_06825 PF02464 Competence-damaged protein M1S28_06825 PF00994 Probable molybdopterin binding domain M1S28_06835 PF00199 Catalase M1S28_06835 PF06628 Catalase-related immune-responsive M1S28_06835 PF18011 C-terminal domain found in long catalases M1S28_06860 PF00717 Peptidase S24-like M1S28_06870 PF13404 AsnC-type helix-turn-helix domain M1S28_06870 PF01037 Lrp/AsnC ligand binding domain M1S28_06880 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M1S28_06880 PF00512 His Kinase A (phospho-acceptor) domain M1S28_06880 PF09308 LuxQ, periplasmic M1S28_06880 PF00072 Response regulator receiver domain M1S28_06885 PF00072 Response regulator receiver domain M1S28_06900 PF00528 Binding-protein-dependent transport system inner membrane component M1S28_06905 PF00528 Binding-protein-dependent transport system inner membrane component M1S28_06910 PF00005 ABC transporter M1S28_06915 PF00497 Bacterial extracellular solute-binding proteins, family 3 M1S28_06920 PF00497 Bacterial extracellular solute-binding proteins, family 3 M1S28_06930 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M1S28_06930 PF03466 LysR substrate binding domain M1S28_06935 PF01810 LysE type translocator M1S28_06945 PF00266 Aminotransferase class-V M1S28_06955 PF00132 Bacterial transferase hexapeptide (six repeats) M1S28_06960 PF00581 Rhodanese-like domain M1S28_06970 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M1S28_06970 PF03466 LysR substrate binding domain M1S28_06975 PF02798 Glutathione S-transferase, N-terminal domain M1S28_06980 PF14834 Glutathione S-transferase, C-terminal domain M1S28_06980 PF02798 Glutathione S-transferase, N-terminal domain M1S28_06985 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M1S28_06985 PF03466 LysR substrate binding domain M1S28_06990 PF03788 LrgA family M1S28_06995 PF04172 LrgB-like family M1S28_07000 PF00155 Aminotransferase class I and II M1S28_07000 PF00392 Bacterial regulatory proteins, gntR family M1S28_07015 PF07690 Major Facilitator Superfamily M1S28_07020 PF16957 Malonate decarboxylase, alpha subunit, transporter M1S28_07025 PF01874 ATP:dephospho-CoA triphosphoribosyl transferase M1S28_07030 PF06857 Malonate decarboxylase delta subunit (MdcD) M1S28_07035 PF01039 Carboxyl transferase domain M1S28_07045 PF10620 Phosphoribosyl-dephospho-CoA transferase MdcG M1S28_07050 PF00698 Acyl transferase domain M1S28_07065 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M1S28_07065 PF03466 LysR substrate binding domain M1S28_07070 PF00155 Aminotransferase class I and II M1S28_07070 PF00392 Bacterial regulatory proteins, gntR family M1S28_07080 PF02322 Cytochrome bd terminal oxidase subunit II M1S28_07085 PF01654 Cytochrome bd terminal oxidase subunit I M1S28_07095 PF02770 Acyl-CoA dehydrogenase, middle domain M1S28_07095 PF08028 Acyl-CoA dehydrogenase, C-terminal domain M1S28_07095 PF02771 Acyl-CoA dehydrogenase, N-terminal domain M1S28_07100 PF00296 Luciferase-like monooxygenase M1S28_07105 PF00083 Sugar (and other) transporter M1S28_07115 PF04069 Substrate binding domain of ABC-type glycine betaine transport system M1S28_07120 PF00005 ABC transporter M1S28_07125 PF00528 Binding-protein-dependent transport system inner membrane component M1S28_07130 PF02668 Taurine catabolism dioxygenase TauD, TfdA family M1S28_07135 PF01177 Asp/Glu/Hydantoin racemase M1S28_07140 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin M1S28_07150 PF03466 LysR substrate binding domain M1S28_07150 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M1S28_07160 PF01979 Amidohydrolase family M1S28_07160 PF13382 Adenine deaminase C-terminal domain M1S28_07170 PF03960 ArsC family M1S28_07175 PF01022 Bacterial regulatory protein, arsR family M1S28_07180 PF01758 Sodium Bile acid symporter family M1S28_07185 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M1S28_07185 PF03466 LysR substrate binding domain M1S28_07200 PF07992 Pyridine nucleotide-disulphide oxidoreductase M1S28_07200 PF13192 Thioredoxin domain M1S28_07215 PF00132 Bacterial transferase hexapeptide (six repeats) M1S28_07220 PF00588 SpoU rRNA Methylase family M1S28_07225 PF17657 Bacterial DNA polymerase III alpha subunit finger domain M1S28_07225 PF14579 Helix-hairpin-helix motif M1S28_07225 PF02811 PHP domain M1S28_07225 PF01336 OB-fold nucleic acid binding domain M1S28_07225 PF07733 Bacterial DNA polymerase III alpha NTPase domain M1S28_07230 PF00710 Asparaginase, N-terminal M1S28_07230 PF17763 Glutaminase/Asparaginase C-terminal domain M1S28_07235 PF00375 Sodium:dicarboxylate symporter family M1S28_07240 PF00155 Aminotransferase class I and II M1S28_07245 PF01641 SelR domain M1S28_07250 PF00255 Glutathione peroxidase M1S28_07255 PF12852 Cupin M1S28_07255 PF12833 Helix-turn-helix domain M1S28_07265 PF00155 Aminotransferase class I and II M1S28_07270 PF08335 GlnD PII-uridylyltransferase M1S28_07270 PF01966 HD domain M1S28_07270 PF01909 Nucleotidyltransferase domain M1S28_07275 PF02222 ATP-grasp domain M1S28_07285 PF05437 Branched-chain amino acid transport protein (AzlD) M1S28_07290 PF03591 AzlC protein M1S28_07315 PF06071 Protein of unknown function (DUF933) M1S28_07315 PF01926 50S ribosome-binding GTPase M1S28_07320 PF00528 Binding-protein-dependent transport system inner membrane component M1S28_07340 PF03180 NLPA lipoprotein M1S28_07345 PF03180 NLPA lipoprotein M1S28_07350 PF00296 Luciferase-like monooxygenase M1S28_07360 PF08028 Acyl-CoA dehydrogenase, C-terminal domain M1S28_07360 PF02771 Acyl-CoA dehydrogenase, N-terminal domain M1S28_07375 PF00528 Binding-protein-dependent transport system inner membrane component M1S28_07380 PF00528 Binding-protein-dependent transport system inner membrane component M1S28_07385 PF00005 ABC transporter M1S28_07400 PF01037 Lrp/AsnC ligand binding domain M1S28_07405 PF01709 Transcriptional regulator M1S28_07415 PF00440 Bacterial regulatory proteins, tetR family M1S28_07435 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M1S28_07435 PF03466 LysR substrate binding domain M1S28_07445 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin M1S28_07455 PF00892 EamA-like transporter family M1S28_07475 PF00577 Outer membrane usher protein M1S28_07475 PF13953 PapC C-terminal domain M1S28_07475 PF13954 PapC N-terminal domain M1S28_07480 PF02753 Pili assembly chaperone PapD, C-terminal domain M1S28_07480 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain M1S28_07485 PF16970 Type-1 fimbrial protein, A M1S28_07500 PF06968 Biotin and Thiamin Synthesis associated domain M1S28_07500 PF04055 Radical SAM superfamily M1S28_07505 PF08331 Domain of unknown function (DUF1730) M1S28_07510 PF03853 YjeF-related protein N-terminus M1S28_07510 PF01256 Carbohydrate kinase M1S28_07515 PF02075 Crossover junction endodeoxyribonuclease RuvC M1S28_07530 PF00905 Penicillin binding protein transpeptidase domain M1S28_07550 PF00438 S-adenosylmethionine synthetase, N-terminal domain M1S28_07550 PF02773 S-adenosylmethionine synthetase, C-terminal domain M1S28_07550 PF02772 S-adenosylmethionine synthetase, central domain M1S28_07555 PF02779 Transketolase, pyrimidine binding domain M1S28_07555 PF02780 Transketolase, C-terminal domain M1S28_07555 PF00456 Transketolase, thiamine diphosphate binding domain M1S28_07565 PF04264 YceI-like domain M1S28_07575 PF09992 Phosphodiester glycosidase M1S28_07585 PF05958 tRNA (Uracil-5-)-methyltransferase M1S28_07590 PF04229 GrpB protein M1S28_07595 PF18327 Proline utilization A proline dehydrogenase N-terminal domain M1S28_07595 PF01619 Proline dehydrogenase M1S28_07595 PF14850 DNA-binding domain of Proline dehydrogenase M1S28_07595 PF00171 Aldehyde dehydrogenase family M1S28_07600 PF01037 Lrp/AsnC ligand binding domain M1S28_07605 PF00474 Sodium:solute symporter family M1S28_07610 PF02146 Sir2 family M1S28_07615 PF01597 Glycine cleavage H-protein M1S28_07620 PF12833 Helix-turn-helix domain M1S28_07620 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term M1S28_07630 PF00664 ABC transporter transmembrane region M1S28_07630 PF00005 ABC transporter M1S28_07635 PF09831 Uncharacterized protein conserved in bacteria (DUF2058) M1S28_07640 PF06912 Protein of unknown function (DUF1275) M1S28_07645 PF00375 Sodium:dicarboxylate symporter family M1S28_07660 PF08007 Cupin superfamily protein M1S28_07665 PF02545 Maf-like protein M1S28_07675 PF00162 Phosphoglycerate kinase M1S28_07685 PF01116 Fructose-bisphosphate aldolase class-II M1S28_07690 PF00639 PPIC-type PPIASE domain M1S28_07690 PF09312 SurA N-terminal domain M1S28_07695 PF03968 OstA-like protein M1S28_07695 PF04453 LPS transport system D M1S28_07700 PF01636 Phosphotransferase enzyme family M1S28_07705 PF00483 Nucleotidyl transferase M1S28_07710 PF02527 rRNA small subunit methyltransferase G M1S28_07715 PF13614 AAA domain M1S28_07720 PF02195 ParB-like nuclease domain M1S28_07720 PF17762 HTH domain found in ParB protein M1S28_07725 PF01618 MotA/TolQ/ExbB proton channel family M1S28_07735 PF00664 ABC transporter transmembrane region M1S28_07735 PF00005 ABC transporter M1S28_07740 PF02606 Tetraacyldisaccharide-1-P 4'-kinase M1S28_07745 PF02348 Cytidylyltransferase M1S28_07750 PF09115 DNA polymerase III, delta subunit, C terminal M1S28_07760 PF01026 TatD related DNase M1S28_07775 PF07963 Prokaryotic N-terminal methylation motif M1S28_07775 PF02501 Type II secretion system (T2SS), protein I M1S28_07780 PF11612 Type II secretion system (T2SS), protein J M1S28_07780 PF07963 Prokaryotic N-terminal methylation motif M1S28_07785 PF03934 Type II secretion system (T2SS), protein K M1S28_07795 PF03167 Uracil DNA glycosylase superfamily M1S28_07805 PF14437 MafB19-like deaminase M1S28_07815 PF02224 Cytidylate kinase M1S28_07820 PF00575 S1 RNA binding domain M1S28_07825 PF00216 Bacterial DNA-binding protein M1S28_07835 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family M1S28_07845 PF00743 Flavin-binding monooxygenase-like M1S28_07855 PF03969 AFG1-like ATPase M1S28_07860 PF01274 Malate synthase M1S28_07870 PF02472 Biopolymer transport protein ExbD/TolR M1S28_07875 PF02472 Biopolymer transport protein ExbD/TolR M1S28_07880 PF01618 MotA/TolQ/ExbB proton channel family M1S28_07890 PF00593 TonB dependent receptor M1S28_07890 PF07715 TonB-dependent Receptor Plug Domain M1S28_07910 PF01432 Peptidase family M3 M1S28_07915 PF00528 Binding-protein-dependent transport system inner membrane component M1S28_07920 PF00528 Binding-protein-dependent transport system inner membrane component M1S28_07925 PF00005 ABC transporter M1S28_07925 PF08352 Oligopeptide/dipeptide transporter, C-terminal region M1S28_07940 PF00459 Inositol monophosphatase family M1S28_07950 PF01649 Ribosomal protein S20 M1S28_07955 PF13460 NAD(P)H-binding M1S28_07960 PF03737 Aldolase/RraA M1S28_07990 PF17757 UvrB interaction domain M1S28_07990 PF03461 TRCF domain M1S28_07990 PF00271 Helicase conserved C-terminal domain M1S28_07990 PF00270 DEAD/DEAH box helicase M1S28_07990 PF02559 CarD-like/TRCF domain M1S28_08000 PF00211 Adenylate and Guanylate cyclase catalytic domain M1S28_08005 PF00111 2Fe-2S iron-sulfur cluster binding domain M1S28_08010 PF00012 Hsp70 protein M1S28_08015 PF00226 DnaJ domain M1S28_08015 PF07743 HSCB C-terminal oligomerisation domain M1S28_08020 PF01521 Iron-sulphur cluster biosynthesis M1S28_08025 PF01592 NifU-like N terminal domain M1S28_08030 PF00266 Aminotransferase class-V M1S28_08035 PF02082 Transcriptional regulator M1S28_08050 PF00216 Bacterial DNA-binding protein M1S28_08055 PF00639 PPIC-type PPIASE domain M1S28_08055 PF09312 SurA N-terminal domain M1S28_08060 PF12852 Cupin M1S28_08060 PF12833 Helix-turn-helix domain M1S28_08065 PF00487 Fatty acid desaturase M1S28_08070 PF02771 Acyl-CoA dehydrogenase, N-terminal domain M1S28_08070 PF00441 Acyl-CoA dehydrogenase, C-terminal domain M1S28_08070 PF02770 Acyl-CoA dehydrogenase, middle domain M1S28_08075 PF02771 Acyl-CoA dehydrogenase, N-terminal domain M1S28_08075 PF02770 Acyl-CoA dehydrogenase, middle domain M1S28_08075 PF00441 Acyl-CoA dehydrogenase, C-terminal domain M1S28_08080 PF03109 ABC1 family M1S28_08090 PF04073 Aminoacyl-tRNA editing domain M1S28_08095 PF06276 Ferric iron reductase FhuF-like transporter M1S28_08095 PF04183 IucA / IucC family M1S28_08100 PF13434 L-lysine 6-monooxygenase (NADPH-requiring) M1S28_08105 PF07690 Major Facilitator Superfamily M1S28_08110 PF04183 IucA / IucC family M1S28_08110 PF06276 Ferric iron reductase FhuF-like transporter M1S28_08115 PF04183 IucA / IucC family M1S28_08115 PF06276 Ferric iron reductase FhuF-like transporter M1S28_08130 PF07715 TonB-dependent Receptor Plug Domain M1S28_08130 PF00593 TonB dependent receptor M1S28_08155 PF13419 Haloacid dehalogenase-like hydrolase M1S28_08165 PF02283 Cobinamide kinase / cobinamide phosphate guanyltransferase M1S28_08170 PF02277 Phosphoribosyltransferase M1S28_08185 PF02654 Cobalamin-5-phosphate synthase M1S28_08190 PF00793 DAHP synthetase I family M1S28_08195 PF01925 Sulfite exporter TauE/SafE M1S28_08215 PF00593 TonB dependent receptor M1S28_08215 PF07715 TonB-dependent Receptor Plug Domain M1S28_08220 PF02684 Lipid-A-disaccharide synthetase M1S28_08230 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion M1S28_08235 PF00005 ABC transporter M1S28_08270 PF01230 HIT domain M1S28_08300 PF08241 Methyltransferase domain M1S28_08305 PF00561 alpha/beta hydrolase fold M1S28_08310 PF01053 Cys/Met metabolism PLP-dependent enzyme M1S28_08320 PF02575 YbaB/EbfC DNA-binding family M1S28_08325 PF02132 RecR protein M1S28_08325 PF13662 Toprim domain M1S28_08330 PF01612 3'-5' exonuclease M1S28_08330 PF00570 HRDC domain M1S28_08350 PF05166 YcgL domain M1S28_08360 PF01434 Peptidase family M41 M1S28_08360 PF17862 AAA+ lid domain M1S28_08360 PF00004 ATPase family associated with various cellular activities (AAA) M1S28_08370 PF00291 Pyridoxal-phosphate dependent enzyme M1S28_08375 PF05175 Methyltransferase small domain M1S28_08380 PF01264 Chorismate synthase M1S28_08385 PF08448 PAS fold M1S28_08385 PF00990 Diguanylate cyclase, GGDEF domain M1S28_08400 PF04055 Radical SAM superfamily M1S28_08405 PF00676 Dehydrogenase E1 component M1S28_08410 PF02779 Transketolase, pyrimidine binding domain M1S28_08410 PF02780 Transketolase, C-terminal domain M1S28_08415 PF02817 e3 binding domain M1S28_08415 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) M1S28_08415 PF00364 Biotin-requiring enzyme M1S28_08420 PF07992 Pyridine nucleotide-disulphide oxidoreductase M1S28_08420 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain M1S28_08425 PF00106 short chain dehydrogenase M1S28_08430 PF08240 Alcohol dehydrogenase GroES-like domain M1S28_08430 PF00107 Zinc-binding dehydrogenase M1S28_08435 PF01062 Bestrophin, RFP-TM, chloride channel M1S28_08440 PF02954 Bacterial regulatory protein, Fis family M1S28_08440 PF00072 Response regulator receiver domain M1S28_08440 PF00158 Sigma-54 interaction domain M1S28_08445 PF04273 Putative phosphatase (DUF442) M1S28_08445 PF00753 Metallo-beta-lactamase superfamily M1S28_08460 PF01925 Sulfite exporter TauE/SafE M1S28_08475 PF06445 GyrI-like small molecule binding domain M1S28_08475 PF12833 Helix-turn-helix domain M1S28_08480 PF01638 HxlR-like helix-turn-helix M1S28_08485 PF02525 Flavodoxin-like fold M1S28_08495 PF00392 Bacterial regulatory proteins, gntR family M1S28_08495 PF07702 UTRA domain M1S28_08510 PF04069 Substrate binding domain of ABC-type glycine betaine transport system M1S28_08515 PF00528 Binding-protein-dependent transport system inner membrane component M1S28_08520 PF00005 ABC transporter M1S28_08535 PF00083 Sugar (and other) transporter M1S28_08540 PF00593 TonB dependent receptor M1S28_08540 PF07715 TonB-dependent Receptor Plug Domain M1S28_08545 PF00206 Lyase M1S28_08545 PF10415 Fumarase C C-terminus M1S28_08560 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M1S28_08560 PF03466 LysR substrate binding domain M1S28_08565 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M1S28_08565 PF03466 LysR substrate binding domain M1S28_08570 PF00108 Thiolase, N-terminal domain M1S28_08570 PF02803 Thiolase, C-terminal domain M1S28_08575 PF02667 Short chain fatty acid transporter M1S28_08580 PF01144 Coenzyme A transferase M1S28_08585 PF01144 Coenzyme A transferase M1S28_08590 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M1S28_08590 PF03466 LysR substrate binding domain M1S28_08615 PF06719 AraC-type transcriptional regulator N-terminus M1S28_08615 PF12833 Helix-turn-helix domain M1S28_08620 PF07690 Major Facilitator Superfamily M1S28_08625 PF01738 Dienelactone hydrolase family M1S28_08640 PF01613 Flavin reductase like domain M1S28_08650 PF14525 AraC-binding-like domain M1S28_08650 PF12833 Helix-turn-helix domain M1S28_08655 PF00970 Oxidoreductase FAD-binding domain M1S28_08655 PF00111 2Fe-2S iron-sulfur cluster binding domain M1S28_08655 PF00175 Oxidoreductase NAD-binding domain M1S28_08660 PF00866 Ring hydroxylating beta subunit M1S28_08665 PF00355 Rieske [2Fe-2S] domain M1S28_08665 PF00848 Ring hydroxylating alpha subunit (catalytic domain) M1S28_08670 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M1S28_08670 PF03459 TOBE domain M1S28_08680 PF00528 Binding-protein-dependent transport system inner membrane component M1S28_08685 PF00005 ABC transporter M1S28_08685 PF03459 TOBE domain M1S28_08690 PF00106 short chain dehydrogenase M1S28_08695 PF00550 Phosphopantetheine attachment site M1S28_08695 PF00857 Isochorismatase family M1S28_08705 PF00149 Calcineurin-like phosphoesterase M1S28_08710 PF02503 Polyphosphate kinase middle domain M1S28_08710 PF13090 Polyphosphate kinase C-terminal domain 2 M1S28_08710 PF17941 Polyphosphate kinase C-terminal domain 1 M1S28_08710 PF13089 Polyphosphate kinase N-terminal domain M1S28_08715 PF08042 PqqA family M1S28_08720 PF12706 Beta-lactamase superfamily domain M1S28_08725 PF03070 TENA/THI-4/PQQC family M1S28_08730 PF05402 Coenzyme PQQ synthesis protein D (PqqD) M1S28_08735 PF13186 Iron-sulfur cluster-binding domain M1S28_08735 PF04055 Radical SAM superfamily M1S28_08740 PF01244 Membrane dipeptidase (Peptidase family M19) M1S28_08755 PF13091 PLD-like domain M1S28_08770 PF00199 Catalase M1S28_08780 PF08240 Alcohol dehydrogenase GroES-like domain M1S28_08780 PF00107 Zinc-binding dehydrogenase M1S28_08790 PF00419 Fimbrial protein M1S28_08795 PF13953 PapC C-terminal domain M1S28_08795 PF13954 PapC N-terminal domain M1S28_08795 PF00577 Outer membrane usher protein M1S28_08800 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain M1S28_08800 PF02753 Pili assembly chaperone PapD, C-terminal domain M1S28_08810 PF16970 Type-1 fimbrial protein, A M1S28_08830 PF01266 FAD dependent oxidoreductase M1S28_08845 PF01593 Flavin containing amine oxidoreductase M1S28_08850 PF00743 Flavin-binding monooxygenase-like M1S28_08855 PF12146 Serine aminopeptidase, S33 M1S28_08860 PF02321 Outer membrane efflux protein M1S28_08865 PF00873 AcrB/AcrD/AcrF family M1S28_08870 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion M1S28_08870 PF00529 HlyD membrane-fusion protein of T1SS M1S28_08875 PF00072 Response regulator receiver domain M1S28_08875 PF00486 Transcriptional regulatory protein, C terminal M1S28_08880 PF16527 Two-component sensor protein CpxA, periplasmic domain M1S28_08880 PF00672 HAMP domain M1S28_08880 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M1S28_08880 PF00512 His Kinase A (phospho-acceptor) domain M1S28_08895 PF02311 AraC-like ligand binding domain M1S28_08895 PF12833 Helix-turn-helix domain M1S28_08900 PF12146 Serine aminopeptidase, S33 M1S28_08950 PF02824 TGS domain M1S28_08950 PF04607 Region found in RelA / SpoT proteins M1S28_08950 PF13291 ACT domain M1S28_08960 PF01975 Survival protein SurE M1S28_08985 PF07690 Major Facilitator Superfamily M1S28_08990 PF13533 Biotin-lipoyl like M1S28_08995 PF01425 Amidase M1S28_09000 PF00196 Bacterial regulatory proteins, luxR family M1S28_09075 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family M1S28_09080 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase M1S28_09080 PF14572 Phosphoribosyl synthetase-associated domain M1S28_09100 PF00005 ABC transporter M1S28_09105 PF01032 FecCD transport family M1S28_09115 PF08240 Alcohol dehydrogenase GroES-like domain M1S28_09115 PF00107 Zinc-binding dehydrogenase M1S28_09130 PF12833 Helix-turn-helix domain M1S28_09130 PF06719 AraC-type transcriptional regulator N-terminus M1S28_09135 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase M1S28_09135 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase M1S28_09140 PF07690 Major Facilitator Superfamily M1S28_09145 PF01370 NAD dependent epimerase/dehydratase family M1S28_09155 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M1S28_09155 PF03466 LysR substrate binding domain M1S28_09165 PF00920 Dehydratase family M1S28_09170 PF00171 Aldehyde dehydrogenase family M1S28_09185 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion M1S28_09185 PF00529 HlyD membrane-fusion protein of T1SS M1S28_09220 PF03737 Aldolase/RraA M1S28_09225 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain M1S28_09225 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain M1S28_09225 PF01842 ACT domain M1S28_09230 PF07690 Major Facilitator Superfamily M1S28_09250 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M1S28_09250 PF03466 LysR substrate binding domain M1S28_09260 PF08450 SMP-30/Gluconolactonase/LRE-like region M1S28_09265 PF07702 UTRA domain M1S28_09265 PF00392 Bacterial regulatory proteins, gntR family M1S28_09275 PF04909 Amidohydrolase M1S28_09280 PF07690 Major Facilitator Superfamily M1S28_09295 PF13018 Extended Signal Peptide of Type V secretion system M1S28_09295 PF13332 Hemagglutinin repeat M1S28_09295 PF05860 haemagglutination activity domain M1S28_09295 PF04829 Pre-toxin domain with VENN motif M1S28_09300 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB M1S28_09300 PF17287 POTRA domain M1S28_09300 PF08479 POTRA domain, ShlB-type M1S28_09310 PF07687 Peptidase dimerisation domain M1S28_09310 PF01546 Peptidase family M20/M25/M40 M1S28_09330 PF02254 TrkA-N domain M1S28_09330 PF00999 Sodium/hydrogen exchanger family M1S28_09335 PF07995 Glucose / Sorbosone dehydrogenase M1S28_09340 PF03466 LysR substrate binding domain M1S28_09340 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M1S28_09345 PF00857 Isochorismatase family M1S28_09355 PF08359 YsiA-like protein, C-terminal region M1S28_09355 PF00440 Bacterial regulatory proteins, tetR family M1S28_09360 PF12706 Beta-lactamase superfamily domain M1S28_09370 PF07992 Pyridine nucleotide-disulphide oxidoreductase M1S28_09380 PF09278 MerR, DNA binding M1S28_09380 PF00376 MerR family regulatory protein M1S28_09385 PF01872 RibD C-terminal domain M1S28_09390 PF00106 short chain dehydrogenase M1S28_09395 PF00724 NADH:flavin oxidoreductase / NADH oxidase family M1S28_09395 PF07992 Pyridine nucleotide-disulphide oxidoreductase M1S28_09400 PF01047 MarR family M1S28_09405 PF07859 alpha/beta hydrolase fold M1S28_09420 PF06628 Catalase-related immune-responsive M1S28_09420 PF00199 Catalase M1S28_09425 PF00561 alpha/beta hydrolase fold M1S28_09435 PF00171 Aldehyde dehydrogenase family M1S28_09440 PF00107 Zinc-binding dehydrogenase M1S28_09440 PF08240 Alcohol dehydrogenase GroES-like domain M1S28_09445 PF00474 Sodium:solute symporter family M1S28_09450 PF04341 Protein of unknown function, DUF485 M1S28_09455 PF00501 AMP-binding enzyme M1S28_09455 PF13193 AMP-binding enzyme C-terminal domain M1S28_09460 PF06506 Propionate catabolism activator M1S28_09460 PF02954 Bacterial regulatory protein, Fis family M1S28_09460 PF00158 Sigma-54 interaction domain M1S28_09470 PF00441 Acyl-CoA dehydrogenase, C-terminal domain M1S28_09470 PF02770 Acyl-CoA dehydrogenase, middle domain M1S28_09470 PF02771 Acyl-CoA dehydrogenase, N-terminal domain M1S28_09490 PF00171 Aldehyde dehydrogenase family M1S28_09500 PF07690 Major Facilitator Superfamily M1S28_09505 PF00920 Dehydratase family M1S28_09510 PF00392 Bacterial regulatory proteins, gntR family M1S28_09510 PF07729 FCD domain M1S28_09520 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M1S28_09520 PF03466 LysR substrate binding domain M1S28_09525 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain M1S28_09525 PF13378 Enolase C-terminal domain-like M1S28_09530 PF02426 Muconolactone delta-isomerase M1S28_09535 PF04444 Catechol dioxygenase N terminus M1S28_09535 PF00775 Dioxygenase M1S28_09540 PF01144 Coenzyme A transferase M1S28_09545 PF01144 Coenzyme A transferase M1S28_09550 PF00108 Thiolase, N-terminal domain M1S28_09550 PF02803 Thiolase, C-terminal domain M1S28_09555 PF12146 Serine aminopeptidase, S33 M1S28_09560 PF01804 Penicillin amidase M1S28_09565 PF00171 Aldehyde dehydrogenase family M1S28_09575 PF02728 Copper amine oxidase, N3 domain M1S28_09575 PF07833 Copper amine oxidase N-terminal domain M1S28_09575 PF01179 Copper amine oxidase, enzyme domain M1S28_09575 PF02727 Copper amine oxidase, N2 domain M1S28_09580 PF02311 AraC-like ligand binding domain M1S28_09580 PF12833 Helix-turn-helix domain M1S28_09585 PF01613 Flavin reductase like domain M1S28_09590 PF00175 Oxidoreductase NAD-binding domain M1S28_09590 PF00111 2Fe-2S iron-sulfur cluster binding domain M1S28_09605 PF00848 Ring hydroxylating alpha subunit (catalytic domain) M1S28_09605 PF00355 Rieske [2Fe-2S] domain M1S28_09620 PF08028 Acyl-CoA dehydrogenase, C-terminal domain M1S28_09625 PF01425 Amidase M1S28_09635 PF07690 Major Facilitator Superfamily M1S28_09645 PF00106 short chain dehydrogenase M1S28_09660 PF02771 Acyl-CoA dehydrogenase, N-terminal domain M1S28_09660 PF02770 Acyl-CoA dehydrogenase, middle domain M1S28_09660 PF00441 Acyl-CoA dehydrogenase, C-terminal domain M1S28_09665 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M1S28_09665 PF03466 LysR substrate binding domain M1S28_09670 PF09339 IclR helix-turn-helix domain M1S28_09670 PF01614 Bacterial transcriptional regulator M1S28_09675 PF00753 Metallo-beta-lactamase superfamily M1S28_09685 PF04143 Sulphur transport M1S28_09695 PF01011 PQQ enzyme repeat M1S28_09695 PF13360 PQQ-like domain M1S28_09700 PF04966 Carbohydrate-selective porin, OprB family M1S28_09705 PF05048 Periplasmic copper-binding protein (NosD) M1S28_09710 PF01487 Type I 3-dehydroquinase M1S28_09715 PF00775 Dioxygenase M1S28_09720 PF00775 Dioxygenase M1S28_09720 PF12391 Protocatechuate 3,4-dioxygenase beta subunit N terminal M1S28_09725 PF02627 Carboxymuconolactone decarboxylase family M1S28_09730 PF07690 Major Facilitator Superfamily M1S28_09735 PF00561 alpha/beta hydrolase fold M1S28_09740 PF00206 Lyase M1S28_09740 PF10397 Adenylosuccinate lyase C-terminus M1S28_09745 PF00108 Thiolase, N-terminal domain M1S28_09745 PF02803 Thiolase, C-terminal domain M1S28_09750 PF01144 Coenzyme A transferase M1S28_09755 PF01144 Coenzyme A transferase M1S28_09760 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase M1S28_09765 PF04977 Septum formation initiator M1S28_09770 PF04239 Protein of unknown function (DUF421) M1S28_09775 PF00113 Enolase, C-terminal TIM barrel domain M1S28_09775 PF03952 Enolase, N-terminal domain M1S28_09780 PF00793 DAHP synthetase I family M1S28_09785 PF06418 CTP synthase N-terminus M1S28_09785 PF00117 Glutamine amidotransferase class-I M1S28_09815 PF00724 NADH:flavin oxidoreductase / NADH oxidase family M1S28_09815 PF07992 Pyridine nucleotide-disulphide oxidoreductase M1S28_09830 PF00793 DAHP synthetase I family M1S28_09835 PF02694 Uncharacterised BCR, YnfA/UPF0060 family M1S28_09840 PF00004 ATPase family associated with various cellular activities (AAA) M1S28_09840 PF17871 AAA lid domain M1S28_09840 PF02861 Clp amino terminal domain, pathogenicity island component M1S28_09840 PF10431 C-terminal, D2-small domain, of ClpB protein M1S28_09840 PF07724 AAA domain (Cdc48 subfamily) M1S28_09845 PF02617 ATP-dependent Clp protease adaptor protein ClpS M1S28_09855 PF01118 Semialdehyde dehydrogenase, NAD binding domain M1S28_09855 PF02774 Semialdehyde dehydrogenase, dimerisation domain M1S28_09870 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) M1S28_09875 PF00291 Pyridoxal-phosphate dependent enzyme M1S28_09875 PF00585 C-terminal regulatory domain of Threonine dehydratase M1S28_09880 PF02080 TrkA-C domain M1S28_09880 PF02254 TrkA-N domain M1S28_09885 PF02386 Cation transport protein M1S28_09890 PF02253 Phospholipase A1 M1S28_09895 PF05193 Peptidase M16 inactive domain M1S28_09895 PF00675 Insulinase (Peptidase family M16) M1S28_09895 PF08367 Peptidase M16C associated M1S28_09900 PF07715 TonB-dependent Receptor Plug Domain M1S28_09900 PF00593 TonB dependent receptor M1S28_09905 PF00294 pfkB family carbohydrate kinase M1S28_09915 PF07290 Protein of unknown function (DUF1449) M1S28_09925 PF01654 Cytochrome bd terminal oxidase subunit I M1S28_09930 PF02322 Cytochrome bd terminal oxidase subunit II M1S28_09935 PF08173 Membrane bound YbgT-like protein M1S28_09950 PF09829 Uncharacterized protein conserved in bacteria (DUF2057) M1S28_09960 PF00448 SRP54-type protein, GTPase domain M1S28_09960 PF02881 SRP54-type protein, helical bundle domain M1S28_09985 PF00478 IMP dehydrogenase / GMP reductase domain M1S28_09985 PF00571 CBS domain M1S28_09990 PF00202 Aminotransferase class-III M1S28_09995 PF00462 Glutaredoxin M1S28_10005 PF03466 LysR substrate binding domain M1S28_10005 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M1S28_10010 PF00557 Metallopeptidase family M24 M1S28_10015 PF05525 Branched-chain amino acid transport protein M1S28_10040 PF05524 PEP-utilising enzyme, N-terminal M1S28_10040 PF00391 PEP-utilising enzyme, mobile domain M1S28_10040 PF02896 PEP-utilising enzyme, TIM barrel domain M1S28_10040 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 M1S28_10040 PF00381 PTS HPr component phosphorylation site M1S28_10045 PF00294 pfkB family carbohydrate kinase M1S28_10050 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit M1S28_10050 PF02378 Phosphotransferase system, EIIC M1S28_10070 PF00563 EAL domain M1S28_10070 PF00990 Diguanylate cyclase, GGDEF domain M1S28_10070 PF03707 Bacterial signalling protein N terminal repeat M1S28_10080 PF07995 Glucose / Sorbosone dehydrogenase M1S28_10085 PF02586 SOS response associated peptidase (SRAP) M1S28_10090 PF00916 Sulfate permease family M1S28_10090 PF01740 STAS domain M1S28_10095 PF00082 Subtilase family M1S28_10095 PF05922 Peptidase inhibitor I9 M1S28_10110 PF00324 Amino acid permease M1S28_10115 PF00266 Aminotransferase class-V M1S28_10120 PF01037 Lrp/AsnC ligand binding domain M1S28_10145 PF13419 Haloacid dehalogenase-like hydrolase M1S28_10150 PF01479 S4 domain M1S28_10155 PF00154 recA bacterial DNA recombination protein M1S28_10160 PF02631 RecX family M1S28_10175 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 M1S28_10175 PF00132 Bacterial transferase hexapeptide (six repeats) M1S28_10180 PF07977 FabA-like domain M1S28_10185 PF00132 Bacterial transferase hexapeptide (six repeats) M1S28_10185 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD M1S28_10195 PF01103 Surface antigen M1S28_10195 PF07244 Surface antigen variable number repeat M1S28_10200 PF13180 PDZ domain M1S28_10200 PF17820 PDZ domain M1S28_10200 PF02163 Peptidase family M50 M1S28_10205 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase M1S28_10205 PF13288 DXP reductoisomerase C-terminal domain M1S28_10205 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain M1S28_10215 PF01255 Putative undecaprenyl diphosphate synthase M1S28_10220 PF01765 Ribosome recycling factor M1S28_10225 PF00696 Amino acid kinase family M1S28_10230 PF04055 Radical SAM superfamily M1S28_10230 PF18693 TRAM domain M1S28_10230 PF00919 Uncharacterized protein family UPF0004 M1S28_10235 PF00512 His Kinase A (phospho-acceptor) domain M1S28_10235 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M1S28_10235 PF00989 PAS fold M1S28_10240 PF02954 Bacterial regulatory protein, Fis family M1S28_10240 PF00072 Response regulator receiver domain M1S28_10240 PF00158 Sigma-54 interaction domain M1S28_10260 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain M1S28_10260 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain M1S28_10270 PF02542 YgbB family M1S28_10280 PF01266 FAD dependent oxidoreductase M1S28_10300 PF10415 Fumarase C C-terminus M1S28_10300 PF00206 Lyase M1S28_10305 PF16363 GDP-mannose 4,6 dehydratase M1S28_10310 PF02635 DsrE/DsrF-like family M1S28_10330 PF00892 EamA-like transporter family M1S28_10335 PF00155 Aminotransferase class I and II M1S28_10335 PF00392 Bacterial regulatory proteins, gntR family M1S28_10340 PF01638 HxlR-like helix-turn-helix M1S28_10345 PF03454 MoeA C-terminal region (domain IV) M1S28_10345 PF03453 MoeA N-terminal region (domain I and II) M1S28_10345 PF00994 Probable molybdopterin binding domain M1S28_10350 PF01967 MoaC family M1S28_10350 PF00994 Probable molybdopterin binding domain M1S28_10355 PF02391 MoaE protein M1S28_10365 PF06463 Molybdenum Cofactor Synthesis C M1S28_10365 PF04055 Radical SAM superfamily M1S28_10370 PF04879 Molybdopterin oxidoreductase Fe4S4 domain M1S28_10370 PF00384 Molybdopterin oxidoreductase M1S28_10370 PF01568 Molydopterin dinucleotide binding domain M1S28_10375 PF12804 MobA-like NTP transferase domain M1S28_10380 PF01568 Molydopterin dinucleotide binding domain M1S28_10380 PF04324 BFD-like [2Fe-2S] binding domain M1S28_10380 PF04879 Molybdopterin oxidoreductase Fe4S4 domain M1S28_10380 PF00384 Molybdopterin oxidoreductase M1S28_10385 PF04324 BFD-like [2Fe-2S] binding domain M1S28_10385 PF07992 Pyridine nucleotide-disulphide oxidoreductase M1S28_10385 PF18267 Rubredoxin NAD+ reductase C-terminal domain M1S28_10385 PF01077 Nitrite and sulphite reductase 4Fe-4S domain M1S28_10385 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain M1S28_10390 PF04324 BFD-like [2Fe-2S] binding domain M1S28_10390 PF01077 Nitrite and sulphite reductase 4Fe-4S domain M1S28_10390 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain M1S28_10390 PF07992 Pyridine nucleotide-disulphide oxidoreductase M1S28_10390 PF13806 Rieske-like [2Fe-2S] domain M1S28_10390 PF18267 Rubredoxin NAD+ reductase C-terminal domain M1S28_10400 PF00072 Response regulator receiver domain M1S28_10400 PF00486 Transcriptional regulatory protein, C terminal M1S28_10405 PF00005 ABC transporter M1S28_10415 PF13438 Domain of unknown function (DUF4113) M1S28_10415 PF00817 impB/mucB/samB family M1S28_10415 PF11799 impB/mucB/samB family C-terminal domain M1S28_10420 PF01220 Dehydroquinase class II M1S28_10425 PF00364 Biotin-requiring enzyme M1S28_10430 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain M1S28_10430 PF00289 Biotin carboxylase, N-terminal domain M1S28_10430 PF02785 Biotin carboxylase C-terminal domain M1S28_10440 PF12832 MFS_1 like family M1S28_10510 PF01476 LysM domain M1S28_10510 PF01551 Peptidase family M23 M1S28_10510 PF08525 Opacity-associated protein A N-terminal motif M1S28_10790 PF01645 Conserved region in glutamate synthase M1S28_10805 PF01565 FAD binding domain M1S28_10805 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain M1S28_10810 PF01451 Low molecular weight phosphotyrosine protein phosphatase M1S28_10820 PF00465 Iron-containing alcohol dehydrogenase M1S28_10825 PF03061 Thioesterase superfamily M1S28_10830 PF05506 Domain of unknown function (DUF756) M1S28_10830 PF04185 Phosphoesterase family M1S28_10835 PF12170 DNA polymerase III tau subunit V interacting with alpha M1S28_10835 PF12169 DNA polymerase III subunits gamma and tau domain III M1S28_10835 PF12168 DNA polymerase III subunits tau domain IV DnaB-binding M1S28_10840 PF07690 Major Facilitator Superfamily M1S28_10850 PF00144 Beta-lactamase M1S28_10855 PF01575 MaoC like domain M1S28_10865 PF02803 Thiolase, C-terminal domain M1S28_10865 PF00108 Thiolase, N-terminal domain M1S28_10875 PF03466 LysR substrate binding domain M1S28_10875 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M1S28_10880 PF00923 Transaldolase/Fructose-6-phosphate aldolase M1S28_10885 PF01810 LysE type translocator M1S28_10890 PF01037 Lrp/AsnC ligand binding domain M1S28_10895 PF03594 Benzoate membrane transport protein M1S28_10900 PF02308 MgtC family M1S28_10905 PF00689 Cation transporting ATPase, C-terminus M1S28_10905 PF00690 Cation transporter/ATPase, N-terminus M1S28_10930 PF00582 Universal stress protein family M1S28_10935 PF00005 ABC transporter M1S28_10935 PF12848 ABC transporter M1S28_10955 PF00593 TonB dependent receptor M1S28_10955 PF07715 TonB-dependent Receptor Plug Domain M1S28_10990 PF00924 Mechanosensitive ion channel M1S28_10995 PF07715 TonB-dependent Receptor Plug Domain M1S28_10995 PF00593 TonB dependent receptor M1S28_11000 PF00440 Bacterial regulatory proteins, tetR family M1S28_11015 PF01037 Lrp/AsnC ligand binding domain M1S28_11020 PF01817 Chorismate mutase type II M1S28_11030 PF00106 short chain dehydrogenase M1S28_11040 PF11940 Domain of unknown function (DUF3458) Ig-like fold M1S28_11040 PF17432 Domain of unknown function (DUF3458_C) ARM repeats M1S28_11040 PF01433 Peptidase family M1 domain M1S28_11055 PF02110 Hydroxyethylthiazole kinase family M1S28_11060 PF06445 GyrI-like small molecule binding domain M1S28_11070 PF14493 Helix-turn-helix domain M1S28_11070 PF05970 PIF1-like helicase M1S28_11075 PF00465 Iron-containing alcohol dehydrogenase M1S28_11090 PF00171 Aldehyde dehydrogenase family M1S28_11095 PF13520 Amino acid permease M1S28_11100 PF06751 Ethanolamine ammonia lyase large subunit (EutB) M1S28_11105 PF05985 Ethanolamine ammonia-lyase light chain (EutC) M1S28_11110 PF02540 NAD synthase M1S28_11110 PF00117 Glutamine amidotransferase class-I M1S28_11110 PF00958 GMP synthase C terminal domain M1S28_11115 PF00749 tRNA synthetases class I (E and Q), catalytic domain M1S28_11115 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain M1S28_11120 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD M1S28_11125 PF00149 Calcineurin-like phosphoesterase M1S28_11135 PF00881 Nitroreductase family M1S28_11145 PF17209 Hfq protein M1S28_11155 PF01119 DNA mismatch repair protein, C-terminal domain M1S28_11155 PF08676 MutL C terminal dimerisation domain M1S28_11160 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE M1S28_11165 PF01479 S4 domain M1S28_11165 PF00849 RNA pseudouridylate synthase M1S28_11180 PF01479 S4 domain M1S28_11180 PF00849 RNA pseudouridylate synthase M1S28_11190 PF04284 Protein of unknown function (DUF441) M1S28_11195 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M1S28_11195 PF03466 LysR substrate binding domain M1S28_11210 PF07690 Major Facilitator Superfamily M1S28_11215 PF00027 Cyclic nucleotide-binding domain M1S28_11215 PF00520 Ion transport protein M1S28_11225 PF00330 Aconitase family (aconitate hydratase) M1S28_11225 PF06434 Aconitate hydratase 2 N-terminus M1S28_11225 PF11791 Aconitate B N-terminal domain M1S28_11240 PF01103 Surface antigen M1S28_11240 PF07244 Surface antigen variable number repeat M1S28_11240 PF17243 POTRA domain TamA domain 1 M1S28_11245 PF07690 Major Facilitator Superfamily M1S28_11250 PF03232 Ubiquinone biosynthesis protein COQ7 M1S28_11260 PF00120 Glutamine synthetase, catalytic domain M1S28_11265 PF00072 Response regulator receiver domain M1S28_11265 PF00486 Transcriptional regulatory protein, C terminal M1S28_11270 PF02702 Osmosensitive K+ channel His kinase sensor domain M1S28_11270 PF00512 His Kinase A (phospho-acceptor) domain M1S28_11270 PF13493 Domain of unknown function (DUF4118) M1S28_11270 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M1S28_11275 PF02669 K+-transporting ATPase, c chain M1S28_11285 PF03814 Potassium-transporting ATPase A subunit M1S28_11300 PF03109 ABC1 family M1S28_11305 PF00899 ThiF family M1S28_11310 PF01613 Flavin reductase like domain M1S28_11315 PF13193 AMP-binding enzyme C-terminal domain M1S28_11315 PF00501 AMP-binding enzyme M1S28_11320 PF02770 Acyl-CoA dehydrogenase, middle domain M1S28_11320 PF02771 Acyl-CoA dehydrogenase, N-terminal domain M1S28_11320 PF00441 Acyl-CoA dehydrogenase, C-terminal domain M1S28_11325 PF00106 short chain dehydrogenase M1S28_11330 PF12833 Helix-turn-helix domain M1S28_11335 PF09084 NMT1/THI5 like M1S28_11340 PF00528 Binding-protein-dependent transport system inner membrane component M1S28_11345 PF13847 Methyltransferase domain M1S28_11345 PF17827 PrmC N-terminal domain M1S28_11350 PF03462 PCRF domain M1S28_11350 PF00472 RF-1 domain M1S28_11360 PF03466 LysR substrate binding domain M1S28_11360 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M1S28_11375 PF00296 Luciferase-like monooxygenase M1S28_11385 PF13994 PgaD-like protein M1S28_11390 PF00535 Glycosyl transferase family 2 M1S28_11395 PF14883 Hypothetical glycosyl hydrolase family 13 M1S28_11395 PF01522 Polysaccharide deacetylase M1S28_11405 PF03618 Kinase/pyrophosphorylase M1S28_11410 PF00391 PEP-utilising enzyme, mobile domain M1S28_11410 PF02896 PEP-utilising enzyme, TIM barrel domain M1S28_11410 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain M1S28_11420 PF00116 Cytochrome C oxidase subunit II, periplasmic domain M1S28_11420 PF06481 COX Aromatic Rich Motif M1S28_11425 PF00115 Cytochrome C and Quinol oxidase polypeptide I M1S28_11430 PF00510 Cytochrome c oxidase subunit III M1S28_11435 PF03626 Prokaryotic Cytochrome C oxidase subunit IV M1S28_11440 PF01040 UbiA prenyltransferase family M1S28_11445 PF01250 Ribosomal protein S6 M1S28_11450 PF01084 Ribosomal protein S18 M1S28_11455 PF03948 Ribosomal protein L9, C-terminal domain M1S28_11455 PF01281 Ribosomal protein L9, N-terminal domain M1S28_11460 PF00772 DnaB-like helicase N terminal domain M1S28_11460 PF03796 DnaB-like helicase C terminal domain M1S28_11465 PF01168 Alanine racemase, N-terminal domain M1S28_11465 PF00842 Alanine racemase, C-terminal domain M1S28_11475 PF08379 Bacterial transglutaminase-like N-terminal region M1S28_11475 PF01841 Transglutaminase-like superfamily M1S28_11485 PF14403 Circularly permuted ATP-grasp type 2 M1S28_11495 PF01134 Glucose inhibited division protein A M1S28_11495 PF13932 GidA associated domain M1S28_11515 PF02954 Bacterial regulatory protein, Fis family M1S28_11520 PF01808 AICARFT/IMPCHase bienzyme M1S28_11520 PF02142 MGS-like domain M1S28_11525 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain M1S28_11525 PF02843 Phosphoribosylglycinamide synthetase, C domain M1S28_11525 PF02844 Phosphoribosylglycinamide synthetase, N domain M1S28_11530 PF03180 NLPA lipoprotein M1S28_11535 PF09383 NIL domain M1S28_11535 PF00005 ABC transporter M1S28_11540 PF00528 Binding-protein-dependent transport system inner membrane component M1S28_11545 PF16123 Hydroxyacylglutathione hydrolase C-terminus M1S28_11545 PF00753 Metallo-beta-lactamase superfamily M1S28_11555 PF00375 Sodium:dicarboxylate symporter family M1S28_11570 PF13610 DDE domain M1S28_11585 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain M1S28_11585 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain M1S28_11605 PF07690 Major Facilitator Superfamily M1S28_11620 PF03279 Bacterial lipid A biosynthesis acyltransferase M1S28_11625 PF00990 Diguanylate cyclase, GGDEF domain M1S28_11625 PF00563 EAL domain M1S28_11625 PF03707 Bacterial signalling protein N terminal repeat M1S28_11630 PF00892 EamA-like transporter family M1S28_11635 PF01037 Lrp/AsnC ligand binding domain M1S28_11640 PF05192 MutS domain III M1S28_11640 PF00488 MutS domain V M1S28_11640 PF01624 MutS domain I M1S28_11640 PF05190 MutS family domain IV M1S28_11640 PF05188 MutS domain II M1S28_11650 PF11953 Domain of unknown function (DUF3470) M1S28_11650 PF00037 4Fe-4S binding domain M1S28_11660 PF01596 O-methyltransferase M1S28_11670 PF00132 Bacterial transferase hexapeptide (six repeats) M1S28_11675 PF01205 Uncharacterized protein family UPF0029 M1S28_11685 PF00664 ABC transporter transmembrane region M1S28_11685 PF00005 ABC transporter M1S28_11685 PF03412 Peptidase C39 family M1S28_11690 PF02321 Outer membrane efflux protein M1S28_11695 PF00005 ABC transporter M1S28_11695 PF12399 Branched-chain amino acid ATP-binding cassette transporter M1S28_11700 PF03968 OstA-like protein M1S28_11715 PF00571 CBS domain M1S28_11715 PF01380 SIS domain M1S28_11720 PF09190 DALR domain M1S28_11720 PF01406 tRNA synthetases class I (C) catalytic domain M1S28_11745 PF01638 HxlR-like helix-turn-helix M1S28_11750 PF07690 Major Facilitator Superfamily M1S28_11775 PF14748 Pyrroline-5-carboxylate reductase dimerisation M1S28_11775 PF03807 NADP oxidoreductase coenzyme F420-dependent M1S28_11785 PF00313 'Cold-shock' DNA-binding domain M1S28_11790 PF01810 LysE type translocator M1S28_11820 PF02601 Exonuclease VII, large subunit M1S28_11820 PF13742 OB-fold nucleic acid binding domain M1S28_11855 PF09278 MerR, DNA binding M1S28_11855 PF00376 MerR family regulatory protein M1S28_11860 PF00403 Heavy-metal-associated domain M1S28_11865 PF00403 Heavy-metal-associated domain M1S28_11870 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M1S28_11870 PF03466 LysR substrate binding domain M1S28_11880 PF00355 Rieske [2Fe-2S] domain M1S28_11880 PF00848 Ring hydroxylating alpha subunit (catalytic domain) M1S28_11885 PF00866 Ring hydroxylating beta subunit M1S28_11890 PF00175 Oxidoreductase NAD-binding domain M1S28_11890 PF00111 2Fe-2S iron-sulfur cluster binding domain M1S28_11890 PF00970 Oxidoreductase FAD-binding domain M1S28_11895 PF00106 short chain dehydrogenase M1S28_11900 PF03594 Benzoate membrane transport protein M1S28_11905 PF07690 Major Facilitator Superfamily M1S28_11915 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III M1S28_11915 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal M1S28_11920 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold M1S28_11920 PF00270 DEAD/DEAH box helicase M1S28_11920 PF00271 Helicase conserved C-terminal domain M1S28_11920 PF11898 Domain of unknown function (DUF3418) M1S28_11920 PF04408 Helicase associated domain (HA2) M1S28_11925 PF10417 C-terminal domain of 1-Cys peroxiredoxin M1S28_11925 PF00578 AhpC/TSA family M1S28_11945 PF13192 Thioredoxin domain M1S28_11945 PF07992 Pyridine nucleotide-disulphide oxidoreductase M1S28_11955 PF00043 Glutathione S-transferase, C-terminal domain M1S28_11955 PF02798 Glutathione S-transferase, N-terminal domain M1S28_11965 PF02390 Putative methyltransferase M1S28_11970 PF00043 Glutathione S-transferase, C-terminal domain M1S28_11970 PF13417 Glutathione S-transferase, N-terminal domain M1S28_11980 PF00691 OmpA family M1S28_11980 PF13488 Glycine zipper M1S28_11985 PF01979 Amidohydrolase family M1S28_11990 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain M1S28_11990 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain M1S28_12000 PF10672 S-adenosylmethionine-dependent methyltransferase M1S28_12000 PF02926 THUMP domain M1S28_12000 PF01170 Putative RNA methylase family UPF0020 M1S28_12015 PF07724 AAA domain (Cdc48 subfamily) M1S28_12015 PF00004 ATPase family associated with various cellular activities (AAA) M1S28_12015 PF10431 C-terminal, D2-small domain, of ClpB protein M1S28_12015 PF17871 AAA lid domain M1S28_12015 PF02861 Clp amino terminal domain, pathogenicity island component M1S28_12030 PF02566 OsmC-like protein M1S28_12040 PF00027 Cyclic nucleotide-binding domain M1S28_12040 PF13545 Crp-like helix-turn-helix domain M1S28_12050 PF00248 Aldo/keto reductase family M1S28_12065 PF00709 Adenylosuccinate synthetase M1S28_12070 PF13393 Histidyl-tRNA synthetase M1S28_12075 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain M1S28_12075 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain M1S28_12080 PF01411 tRNA synthetases class II (A) M1S28_12080 PF02272 DHHA1 domain M1S28_12080 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain M1S28_12085 PF00696 Amino acid kinase family M1S28_12085 PF13840 ACT domain M1S28_12085 PF01842 ACT domain M1S28_12090 PF02599 Global regulator protein family M1S28_12095 PF01351 Ribonuclease HII M1S28_12105 PF01292 Prokaryotic cytochrome b561 M1S28_12110 PF00962 Adenosine/AMP deaminase M1S28_12115 PF00860 Permease family M1S28_12125 PF00743 Flavin-binding monooxygenase-like M1S28_12130 PF00106 short chain dehydrogenase M1S28_12140 PF02678 Pirin M1S28_12140 PF17954 Quercetinase C-terminal cupin domain M1S28_12145 PF17932 Tetracyclin repressor-like, C-terminal domain M1S28_12145 PF00440 Bacterial regulatory proteins, tetR family M1S28_12155 PF00106 short chain dehydrogenase M1S28_12165 PF13610 DDE domain M1S28_12175 PF01266 FAD dependent oxidoreductase M1S28_12180 PF00324 Amino acid permease M1S28_12220 PF03527 RHS protein M1S28_12220 PF05593 RHS Repeat M1S28_12225 PF13296 Putative type VI secretion system Rhs element Vgr M1S28_12225 PF10106 Uncharacterized protein conserved in bacteria (DUF2345) M1S28_12225 PF04717 Type VI secretion system, phage-baseplate injector M1S28_12245 PF03180 NLPA lipoprotein M1S28_12250 PF05987 Bacterial protein of unknown function (DUF898) M1S28_12265 PF07992 Pyridine nucleotide-disulphide oxidoreductase M1S28_12265 PF00724 NADH:flavin oxidoreductase / NADH oxidase family M1S28_12270 PF00764 Arginosuccinate synthase M1S28_12275 PF00563 EAL domain M1S28_12275 PF01590 GAF domain M1S28_12275 PF00990 Diguanylate cyclase, GGDEF domain M1S28_12275 PF00360 Phytochrome region M1S28_12280 PF01979 Amidohydrolase family M1S28_12285 PF00929 Exonuclease M1S28_12295 PF00593 TonB dependent receptor M1S28_12295 PF07715 TonB-dependent Receptor Plug Domain M1S28_12300 PF00724 NADH:flavin oxidoreductase / NADH oxidase family M1S28_12300 PF07992 Pyridine nucleotide-disulphide oxidoreductase M1S28_12305 PF00005 ABC transporter M1S28_12305 PF08352 Oligopeptide/dipeptide transporter, C-terminal region M1S28_12310 PF12911 N-terminal TM domain of oligopeptide transport permease C M1S28_12310 PF00528 Binding-protein-dependent transport system inner membrane component M1S28_12315 PF00528 Binding-protein-dependent transport system inner membrane component M1S28_12320 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle M1S28_12325 PF01464 Transglycosylase SLT domain M1S28_12325 PF01464 Transglycosylase SLT domain M1S28_12325 PF01476 LysM domain M1S28_12325 PF01476 LysM domain M1S28_12330 PF00929 Exonuclease M1S28_12340 PF00293 NUDIX domain M1S28_12340 PF09297 NADH pyrophosphatase zinc ribbon domain M1S28_12350 PF04972 BON domain M1S28_12355 PF02021 Uncharacterised protein family UPF0102 M1S28_12360 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases M1S28_12370 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M1S28_12370 PF03466 LysR substrate binding domain M1S28_12375 PF01810 LysE type translocator M1S28_12385 PF13411 MerR HTH family regulatory protein M1S28_12395 PF01494 FAD binding domain M1S28_12400 PF01494 FAD binding domain M1S28_12405 PF05195 Aminopeptidase P, N-terminal domain M1S28_12405 PF00557 Metallopeptidase family M24 M1S28_12490 PF10145 Phage-related minor tail protein M1S28_12490 PF01551 Peptidase family M23 M1S28_12490 PF01464 Transglycosylase SLT domain M1S28_12550 PF04860 Phage portal protein M1S28_12650 PF00772 DnaB-like helicase N terminal domain M1S28_12650 PF03796 DnaB-like helicase C terminal domain M1S28_12665 PF00717 Peptidase S24-like M1S28_12665 PF01726 LexA DNA binding domain M1S28_12720 PF00884 Sulfatase M1S28_12720 PF08019 Phosphoethanolamine transferase EptA/EptB M1S28_12765 PF01476 LysM domain M1S28_12765 PF08525 Opacity-associated protein A N-terminal motif M1S28_12765 PF01551 Peptidase family M23 M1S28_13090 PF01812 5-formyltetrahydrofolate cyclo-ligase family M1S28_13095 PF00691 OmpA family M1S28_13095 PF04355 SmpA / OmlA family M1S28_13100 PF13018 Extended Signal Peptide of Type V secretion system M1S28_13100 PF03895 YadA-like membrane anchor domain M1S28_13100 PF05662 Coiled stalk of trimeric autotransporter adhesin M1S28_13100 PF05658 Head domain of trimeric autotransporter adhesin M1S28_13105 PF02190 ATP-dependent protease La (LON) substrate-binding domain M1S28_13105 PF00004 ATPase family associated with various cellular activities (AAA) M1S28_13105 PF05362 Lon protease (S16) C-terminal proteolytic domain M1S28_13110 PF02590 Predicted SPOUT methyltransferase M1S28_13115 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase M1S28_13125 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain M1S28_13125 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase M1S28_13130 PF04060 Putative Fe-S cluster M1S28_13135 PF10576 Iron-sulfur binding domain of endonuclease III M1S28_13135 PF00633 Helix-hairpin-helix motif M1S28_13135 PF00730 HhH-GPD superfamily base excision DNA repair protein M1S28_13145 PF05191 Adenylate kinase, active site lid M1S28_13160 PF03717 Penicillin-binding Protein dimerisation domain M1S28_13160 PF00905 Penicillin binding protein transpeptidase domain M1S28_13175 PF02492 CobW/HypB/UreG, nucleotide-binding domain M1S28_13180 PF01730 UreF M1S28_13185 PF05194 UreE urease accessory protein, C-terminal domain M1S28_13185 PF02814 UreE urease accessory protein, N-terminal domain M1S28_13190 PF00449 Urease alpha-subunit, N-terminal domain M1S28_13190 PF01979 Amidohydrolase family M1S28_13195 PF00699 Urease beta subunit M1S28_13200 PF00547 Urease, gamma subunit M1S28_13205 PF01774 UreD urease accessory protein M1S28_13220 PF00463 Isocitrate lyase family M1S28_13225 PF03466 LysR substrate binding domain M1S28_13225 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M1S28_13230 PF03471 Transporter associated domain M1S28_13230 PF00571 CBS domain M1S28_13230 PF01595 Cyclin M transmembrane N-terminal domain M1S28_13235 PF03600 Citrate transporter M1S28_13250 PF00009 Elongation factor Tu GTP binding domain M1S28_13255 PF01507 Phosphoadenosine phosphosulfate reductase family M1S28_13265 PF14052 Capsule assembly protein Wzi M1S28_13270 PF01336 OB-fold nucleic acid binding domain M1S28_13270 PF00152 tRNA synthetases class II (D, K and N) M1S28_13285 PF00301 Rubredoxin M1S28_13290 PF07992 Pyridine nucleotide-disulphide oxidoreductase M1S28_13290 PF18113 Rubredoxin binding C-terminal domain M1S28_13295 PF00561 alpha/beta hydrolase fold M1S28_13300 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M1S28_13300 PF03466 LysR substrate binding domain M1S28_13310 PF02503 Polyphosphate kinase middle domain M1S28_13310 PF13090 Polyphosphate kinase C-terminal domain 2 M1S28_13310 PF17941 Polyphosphate kinase C-terminal domain 1 M1S28_13310 PF13089 Polyphosphate kinase N-terminal domain M1S28_13315 PF00912 Transglycosylase M1S28_13320 PF01694 Rhomboid family M1S28_13330 PF00005 ABC transporter M1S28_13335 PF13472 GDSL-like Lipase/Acylhydrolase family M1S28_13340 PF00484 Carbonic anhydrase M1S28_13345 PF00561 alpha/beta hydrolase fold M1S28_13355 PF00593 TonB dependent receptor M1S28_13355 PF07715 TonB-dependent Receptor Plug Domain M1S28_13360 PF01106 NifU-like domain M1S28_13360 PF01521 Iron-sulphur cluster biosynthesis M1S28_13370 PF00884 Sulfatase M1S28_13375 PF03781 Sulfatase-modifying factor enzyme 1 M1S28_13390 PF00291 Pyridoxal-phosphate dependent enzyme M1S28_13395 PF01384 Phosphate transporter family M1S28_13400 PF02965 Vitamin B12 dependent methionine synthase, activation domain M1S28_13400 PF02310 B12 binding domain M1S28_13400 PF02607 B12 binding domain M1S28_13400 PF00809 Pterin binding enzyme M1S28_13400 PF02574 Homocysteine S-methyltransferase M1S28_13405 PF02779 Transketolase, pyrimidine binding domain M1S28_13405 PF02780 Transketolase, C-terminal domain M1S28_13410 PF00456 Transketolase, thiamine diphosphate binding domain M1S28_13415 PF07690 Major Facilitator Superfamily M1S28_13425 PF03466 LysR substrate binding domain M1S28_13425 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M1S28_13435 PF01263 Aldose 1-epimerase M1S28_13440 PF07690 Major Facilitator Superfamily M1S28_13445 PF02311 AraC-like ligand binding domain M1S28_13445 PF12833 Helix-turn-helix domain M1S28_13450 PF04960 Glutaminase M1S28_13455 PF01327 Polypeptide deformylase M1S28_13460 PF07690 Major Facilitator Superfamily M1S28_13470 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain M1S28_13470 PF00205 Thiamine pyrophosphate enzyme, central domain M1S28_13470 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain M1S28_13475 PF00171 Aldehyde dehydrogenase family M1S28_13480 PF01958 Domain of unknown function DUF108 M1S28_13480 PF03447 Homoserine dehydrogenase, NAD binding domain M1S28_13490 PF12697 Alpha/beta hydrolase family M1S28_13500 PF07690 Major Facilitator Superfamily M1S28_13505 PF14759 Reductase C-terminal M1S28_13505 PF07992 Pyridine nucleotide-disulphide oxidoreductase M1S28_13510 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily M1S28_13520 PF00355 Rieske [2Fe-2S] domain M1S28_13530 PF00355 Rieske [2Fe-2S] domain M1S28_13535 PF01614 Bacterial transcriptional regulator M1S28_13535 PF09339 IclR helix-turn-helix domain M1S28_13550 PF00378 Enoyl-CoA hydratase/isomerase M1S28_13560 PF00535 Glycosyl transferase family 2 M1S28_13565 PF01522 Polysaccharide deacetylase M1S28_13565 PF14883 Hypothetical glycosyl hydrolase family 13 M1S28_13570 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase M1S28_13575 PF07152 YaeQ protein M1S28_13580 PF00375 Sodium:dicarboxylate symporter family M1S28_13585 PF02492 CobW/HypB/UreG, nucleotide-binding domain M1S28_13585 PF07683 Cobalamin synthesis protein cobW C-terminal domain M1S28_13595 PF03061 Thioesterase superfamily M1S28_13605 PF02028 BCCT, betaine/carnitine/choline family transporter M1S28_13610 PF02028 BCCT, betaine/carnitine/choline family transporter M1S28_13615 PF13977 BetI-type transcriptional repressor, C-terminal M1S28_13615 PF00440 Bacterial regulatory proteins, tetR family M1S28_13620 PF00171 Aldehyde dehydrogenase family M1S28_13625 PF05199 GMC oxidoreductase M1S28_13625 PF00732 GMC oxidoreductase M1S28_13630 PF06039 Malate:quinone oxidoreductase (Mqo) M1S28_13640 PF02574 Homocysteine S-methyltransferase M1S28_13645 PF13520 Amino acid permease M1S28_13670 PF01126 Heme oxygenase M1S28_13680 PF04575 Protein of unknown function (DUF560) M1S28_13690 PF07715 TonB-dependent Receptor Plug Domain M1S28_13690 PF00593 TonB dependent receptor M1S28_13700 PF08281 Sigma-70, region 4 M1S28_13700 PF04542 Sigma-70 region 2 M1S28_13710 PF00701 Dihydrodipicolinate synthetase family M1S28_13715 PF00083 Sugar (and other) transporter M1S28_13735 PF01026 TatD related DNase M1S28_13750 PF07693 KAP family P-loop domain M1S28_13770 PF00436 Single-strand binding protein family M1S28_13825 PF13356 Arm DNA-binding domain M1S28_13825 PF00589 Phage integrase family M1S28_13915 PF02768 DNA polymerase III beta subunit, C-terminal domain M1S28_13915 PF02767 DNA polymerase III beta subunit, central domain M1S28_13915 PF00712 DNA polymerase III beta subunit, N-terminal domain M1S28_13955 PF05016 ParE toxin of type II toxin-antitoxin system, parDE M1S28_14105 PF07007 Lysozyme inhibitor LprI M1S28_14150 PF01695 IstB-like ATP binding protein M1S28_14160 PF00145 C-5 cytosine-specific DNA methylase M1S28_14205 PF00717 Peptidase S24-like M1S28_14205 PF01381 Helix-turn-helix M1S28_14240 PF00929 Exonuclease M1S28_14315 PF07690 Major Facilitator Superfamily M1S28_14320 PF13533 Biotin-lipoyl like M1S28_14325 PF03061 Thioesterase superfamily M1S28_14330 PF00490 Delta-aminolevulinic acid dehydratase M1S28_14335 PF01266 FAD dependent oxidoreductase M1S28_14340 PF08338 Domain of unknown function (DUF1731) M1S28_14340 PF01370 NAD dependent epimerase/dehydratase family M1S28_14360 PF00149 Calcineurin-like phosphoesterase M1S28_14360 PF12320 Type 5 capsule protein repressor C-terminal domain M1S28_14370 PF01168 Alanine racemase, N-terminal domain M1S28_14375 PF00437 Type II/IV secretion system protein M1S28_14380 PF00437 Type II/IV secretion system protein M1S28_14385 PF01475 Ferric uptake regulator family M1S28_14390 PF04355 SmpA / OmlA family M1S28_14395 PF03658 RnfH family Ubiquitin M1S28_14405 PF01814 Hemerythrin HHE cation binding domain M1S28_14410 PF13230 Glutamine amidotransferases class-II M1S28_14420 PF00696 Amino acid kinase family M1S28_14425 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I M1S28_14425 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II M1S28_14425 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III M1S28_14425 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain M1S28_14430 PF00692 dUTPase M1S28_14435 PF13361 UvrD-like helicase C-terminal domain M1S28_14435 PF00580 UvrD/REP helicase N-terminal domain M1S28_14440 PF13488 Glycine zipper M1S28_14440 PF00691 OmpA family M1S28_14445 PF01553 Acyltransferase M1S28_14455 PF03775 Septum formation inhibitor MinC, C-terminal domain M1S28_14460 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain M1S28_14465 PF03776 Septum formation topological specificity factor MinE M1S28_14480 PF01810 LysE type translocator M1S28_14485 PF09397 Ftsk gamma domain M1S28_14485 PF17854 FtsK alpha domain M1S28_14485 PF01580 FtsK/SpoIIIE family M1S28_14485 PF13491 4TM region of DNA translocase FtsK/SpoIIIE M1S28_14490 PF07992 Pyridine nucleotide-disulphide oxidoreductase M1S28_14495 PF03588 Leucyl/phenylalanyl-tRNA protein transferase M1S28_14500 PF04377 Arginine-tRNA-protein transferase, C terminus M1S28_14500 PF04376 Arginine-tRNA-protein transferase, N terminus M1S28_14505 PF00583 Acetyltransferase (GNAT) family M1S28_14520 PF00009 Elongation factor Tu GTP binding domain M1S28_14520 PF03144 Elongation factor Tu domain 2 M1S28_14520 PF03143 Elongation factor Tu C-terminal domain M1S28_14525 PF00009 Elongation factor Tu GTP binding domain M1S28_14525 PF03144 Elongation factor Tu domain 2 M1S28_14525 PF03764 Elongation factor G, domain IV M1S28_14525 PF00679 Elongation factor G C-terminus M1S28_14525 PF14492 Elongation Factor G, domain II M1S28_14530 PF00177 Ribosomal protein S7p/S5e M1S28_14535 PF00164 Ribosomal protein S12/S23 M1S28_14545 PF00109 Beta-ketoacyl synthase, N-terminal domain M1S28_14545 PF02801 Beta-ketoacyl synthase, C-terminal domain M1S28_14550 PF03653 Uncharacterised protein family (UPF0093) M1S28_14555 PF02678 Pirin M1S28_14555 PF05726 Pirin C-terminal cupin domain M1S28_14565 PF00795 Carbon-nitrogen hydrolase M1S28_14565 PF02540 NAD synthase M1S28_14580 PF00175 Oxidoreductase NAD-binding domain M1S28_14580 PF00970 Oxidoreductase FAD-binding domain M1S28_14580 PF00111 2Fe-2S iron-sulfur cluster binding domain M1S28_14585 PF00171 Aldehyde dehydrogenase family M1S28_14590 PF00355 Rieske [2Fe-2S] domain M1S28_14590 PF00848 Ring hydroxylating alpha subunit (catalytic domain) M1S28_14595 PF07859 alpha/beta hydrolase fold M1S28_14600 PF02028 BCCT, betaine/carnitine/choline family transporter M1S28_14605 PF00180 Isocitrate/isopropylmalate dehydrogenase M1S28_14610 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M1S28_14610 PF03466 LysR substrate binding domain M1S28_14630 PF00037 4Fe-4S binding domain M1S28_14635 PF01467 Cytidylyltransferase-like M1S28_14640 PF01668 SmpB protein M1S28_14645 PF03358 NADPH-dependent FMN reductase M1S28_14650 PF02578 Multi-copper polyphenol oxidoreductase laccase M1S28_14655 PF00849 RNA pseudouridylate synthase M1S28_14655 PF01479 S4 domain M1S28_14660 PF13525 Outer membrane lipoprotein M1S28_14665 PF10410 DnaB-helicase binding domain of primase M1S28_14665 PF08278 DNA primase DnaG DnaB-binding M1S28_14665 PF08275 DNA primase catalytic core, N-terminal domain M1S28_14665 PF01807 CHC2 zinc finger M1S28_14670 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain M1S28_14670 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain M1S28_14670 PF01488 Shikimate / quinate 5-dehydrogenase M1S28_14680 PF03550 Outer membrane lipoprotein LolB M1S28_14685 PF00288 GHMP kinases N terminal domain M1S28_14685 PF08544 GHMP kinases C terminal M1S28_14710 PF14572 Phosphoribosyl synthetase-associated domain M1S28_14710 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase M1S28_14715 PF01386 Ribosomal L25p family M1S28_14720 PF01195 Peptidyl-tRNA hydrolase M1S28_14725 PF02261 Aspartate decarboxylase M1S28_14740 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase M1S28_14750 PF02581 Thiamine monophosphate synthase M1S28_14750 PF08543 Phosphomethylpyrimidine kinase M1S28_14750 PF03070 TENA/THI-4/PQQC family M1S28_14755 PF01476 LysM domain M1S28_14755 PF04972 BON domain M1S28_14760 PF00550 Phosphopantetheine attachment site M1S28_14770 PF00698 Acyl transferase domain M1S28_14775 PF01783 Ribosomal L32p protein family M1S28_14780 PF02620 Large ribosomal RNA subunit accumulation protein YceD M1S28_14785 PF04315 Elongation factor P hydroxylase M1S28_14790 PF01300 Telomere recombination M1S28_14795 PF02616 Segregation and condensation protein ScpA M1S28_14800 PF04079 Segregation and condensation complex subunit ScpB M1S28_14805 PF00849 RNA pseudouridylate synthase M1S28_14805 PF01479 S4 domain M1S28_14820 PF00155 Aminotransferase class I and II M1S28_14825 PF00202 Aminotransferase class-III M1S28_14825 PF06968 Biotin and Thiamin Synthesis associated domain M1S28_14825 PF04055 Radical SAM superfamily M1S28_14830 PF08241 Methyltransferase domain M1S28_14830 PF12697 Alpha/beta hydrolase family M1S28_14835 PF02358 Trehalose-phosphatase M1S28_14840 PF00982 Glycosyltransferase family 20 M1S28_14845 PF07690 Major Facilitator Superfamily M1S28_14850 PF00210 Ferritin-like domain M1S28_14855 PF03120 NAD-dependent DNA ligase OB-fold domain M1S28_14855 PF12826 Helix-hairpin-helix motif M1S28_14855 PF03119 NAD-dependent DNA ligase C4 zinc finger domain M1S28_14855 PF01653 NAD-dependent DNA ligase adenylation domain M1S28_14855 PF00533 BRCA1 C Terminus (BRCT) domain M1S28_14865 PF06470 SMC proteins Flexible Hinge Domain M1S28_14865 PF02463 RecF/RecN/SMC N terminal domain M1S28_14875 PF01925 Sulfite exporter TauE/SafE M1S28_14885 PF03309 Type III pantothenate kinase M1S28_14890 PF02978 Signal peptide binding domain M1S28_14890 PF00448 SRP54-type protein, GTPase domain M1S28_14890 PF02881 SRP54-type protein, helical bundle domain M1S28_14900 PF01207 Dihydrouridine synthase (Dus) M1S28_14940 PF00692 dUTPase M1S28_14955 PF01048 Phosphorylase superfamily M1S28_14960 PF10609 NUBPL iron-transfer P-loop NTPase M1S28_14970 PF09334 tRNA synthetases class I (M) M1S28_14970 PF01588 Putative tRNA binding domain M1S28_14995 PF13533 Biotin-lipoyl like M1S28_15000 PF00291 Pyridoxal-phosphate dependent enzyme M1S28_15015 PF05552 Conserved TM helix M1S28_15030 PF00970 Oxidoreductase FAD-binding domain M1S28_15030 PF00175 Oxidoreductase NAD-binding domain M1S28_15035 PF03466 LysR substrate binding domain M1S28_15035 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M1S28_15040 PF00313 'Cold-shock' DNA-binding domain M1S28_15050 PF00361 Proton-conducting membrane transporter M1S28_15055 PF00361 Proton-conducting membrane transporter M1S28_15060 PF00361 Proton-conducting membrane transporter M1S28_15060 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus M1S28_15065 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L M1S28_15070 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 M1S28_15075 PF12838 4Fe-4S dicluster domain M1S28_15080 PF00146 NADH dehydrogenase M1S28_15085 PF04879 Molybdopterin oxidoreductase Fe4S4 domain M1S28_15085 PF00384 Molybdopterin oxidoreductase M1S28_15085 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region M1S28_15090 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit M1S28_15090 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region M1S28_15090 PF10531 SLBB domain M1S28_15100 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit M1S28_15100 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit M1S28_15105 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit M1S28_15110 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 M1S28_15115 PF00990 Diguanylate cyclase, GGDEF domain M1S28_15115 PF17151 Periplasmic sensor domain M1S28_15125 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M1S28_15125 PF00512 His Kinase A (phospho-acceptor) domain M1S28_15125 PF00672 HAMP domain M1S28_15130 PF00072 Response regulator receiver domain M1S28_15130 PF00486 Transcriptional regulatory protein, C terminal M1S28_15140 PF02867 Ribonucleotide reductase, barrel domain M1S28_15140 PF00317 Ribonucleotide reductase, all-alpha domain M1S28_15140 PF03477 ATP cone domain M1S28_15150 PF00268 Ribonucleotide reductase, small chain M1S28_15160 PF00672 HAMP domain M1S28_15160 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M1S28_15160 PF00512 His Kinase A (phospho-acceptor) domain M1S28_15160 PF13756 Stimulus-sensing domain M1S28_15160 PF13755 Sensor N-terminal transmembrane domain M1S28_15230 PF01011 PQQ enzyme repeat M1S28_15230 PF13360 PQQ-like domain M1S28_15255 PF02567 Phenazine biosynthesis-like protein M1S28_15280 PF01613 Flavin reductase like domain M1S28_15285 PF08267 Cobalamin-independent synthase, N-terminal domain M1S28_15285 PF01717 Cobalamin-independent synthase, Catalytic domain M1S28_15295 PF03466 LysR substrate binding domain M1S28_15295 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M1S28_15300 PF01810 LysE type translocator M1S28_15310 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term M1S28_15310 PF12833 Helix-turn-helix domain M1S28_15315 PF07687 Peptidase dimerisation domain M1S28_15315 PF01546 Peptidase family M20/M25/M40 M1S28_15325 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M1S28_15325 PF03466 LysR substrate binding domain M1S28_15330 PF07690 Major Facilitator Superfamily M1S28_15340 PF03466 LysR substrate binding domain M1S28_15340 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M1S28_15345 PF00890 FAD binding domain M1S28_15345 PF14537 Cytochrome c3 M1S28_15355 PF02515 CoA-transferase family III M1S28_15360 PF07690 Major Facilitator Superfamily M1S28_15365 PF00441 Acyl-CoA dehydrogenase, C-terminal domain M1S28_15365 PF02771 Acyl-CoA dehydrogenase, N-terminal domain M1S28_15365 PF02770 Acyl-CoA dehydrogenase, middle domain M1S28_15370 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M1S28_15370 PF03466 LysR substrate binding domain M1S28_15375 PF08240 Alcohol dehydrogenase GroES-like domain M1S28_15375 PF00107 Zinc-binding dehydrogenase M1S28_15380 PF00962 Adenosine/AMP deaminase M1S28_15405 PF02445 Quinolinate synthetase A protein M1S28_15410 PF01960 ArgJ family M1S28_15415 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain M1S28_15415 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain M1S28_15420 PF00893 Small Multidrug Resistance protein M1S28_15430 PF05275 Copper resistance protein B precursor (CopB) M1S28_15435 PF00394 Multicopper oxidase M1S28_15435 PF07732 Multicopper oxidase M1S28_15435 PF07731 Multicopper oxidase M1S28_15450 PF00834 Ribulose-phosphate 3 epimerase family M1S28_15460 PF00756 Putative esterase M1S28_15470 PF04445 Putative SAM-dependent methyltransferase M1S28_15475 PF00814 Glycoprotease family M1S28_15480 PF00132 Bacterial transferase hexapeptide (six repeats) M1S28_15485 PF00293 NUDIX domain M1S28_15525 PF04715 Anthranilate synthase component I, N terminal region M1S28_15525 PF00425 chorismate binding enzyme M1S28_15530 PF00155 Aminotransferase class I and II M1S28_15535 PF00815 Histidinol dehydrogenase M1S28_15540 PF01634 ATP phosphoribosyltransferase M1S28_15545 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) M1S28_15550 PF01722 BolA-like protein M1S28_15555 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein M1S28_15560 PF00309 Sigma-54 factor, Activator interacting domain (AID) M1S28_15560 PF04552 Sigma-54, DNA binding domain M1S28_15560 PF04963 Sigma-54 factor, core binding domain M1S28_15605 PF00795 Carbon-nitrogen hydrolase M1S28_15615 PF01047 MarR family M1S28_15620 PF02566 OsmC-like protein M1S28_15625 PF00437 Type II/IV secretion system protein M1S28_15645 PF01612 3'-5' exonuclease M1S28_15645 PF00476 DNA polymerase family A M1S28_15645 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain M1S28_15645 PF01367 5'-3' exonuclease, C-terminal SAM fold M1S28_15650 PF02325 YGGT family M1S28_15655 PF03807 NADP oxidoreductase coenzyme F420-dependent M1S28_15655 PF14748 Pyrroline-5-carboxylate reductase dimerisation M1S28_15660 PF09179 TilS substrate binding domain M1S28_15660 PF11734 TilS substrate C-terminal domain M1S28_15660 PF01171 PP-loop family M1S28_15665 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit M1S28_15670 PF02541 Ppx/GppA phosphatase family M1S28_15675 PF00085 Thioredoxin M1S28_15680 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain M1S28_15680 PF07498 Rho termination factor, N-terminal domain M1S28_15680 PF07497 Rho termination factor, RNA-binding domain M1S28_15695 PF00216 Bacterial DNA-binding protein M1S28_15700 PF03483 B3/4 domain M1S28_15700 PF03484 tRNA synthetase B5 domain M1S28_15700 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain M1S28_15700 PF03147 Ferredoxin-fold anticodon binding domain M1S28_15700 PF01588 Putative tRNA binding domain M1S28_15705 PF01409 tRNA synthetases class II core domain (F) M1S28_15705 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain M1S28_15725 PF00453 Ribosomal protein L20 M1S28_15730 PF01632 Ribosomal protein L35 M1S28_15740 PF07690 Major Facilitator Superfamily M1S28_15745 PF09335 SNARE associated Golgi protein M1S28_15750 PF00043 Glutathione S-transferase, C-terminal domain M1S28_15750 PF02798 Glutathione S-transferase, N-terminal domain M1S28_15755 PF05198 Translation initiation factor IF-3, N-terminal domain M1S28_15755 PF00707 Translation initiation factor IF-3, C-terminal domain M1S28_15760 PF02824 TGS domain M1S28_15760 PF03129 Anticodon binding domain M1S28_15760 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) M1S28_15760 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain M1S28_15765 PF13193 AMP-binding enzyme C-terminal domain M1S28_15765 PF00501 AMP-binding enzyme M1S28_15770 PF04751 Protein of unknown function (DUF615) M1S28_15775 PF00381 PTS HPr component phosphorylation site M1S28_15780 PF03668 P-loop ATPase protein family M1S28_15785 PF02569 Pantoate-beta-alanine ligase M1S28_15790 PF02548 Ketopantoate hydroxymethyltransferase M1S28_15795 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) M1S28_15800 PF01743 Poly A polymerase head domain M1S28_15800 PF12627 Probable RNA and SrmB- binding site of polymerase A M1S28_15800 PF12626 Polymerase A arginine-rich C-terminus M1S28_15810 PF03819 MazG nucleotide pyrophosphohydrolase domain M1S28_15820 PF04607 Region found in RelA / SpoT proteins M1S28_15820 PF13291 ACT domain M1S28_15820 PF02824 TGS domain M1S28_15825 PF05958 tRNA (Uracil-5-)-methyltransferase M1S28_15835 PF00291 Pyridoxal-phosphate dependent enzyme M1S28_15840 PF01627 Hpt domain M1S28_15840 PF00672 HAMP domain M1S28_15840 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M1S28_15840 PF00512 His Kinase A (phospho-acceptor) domain M1S28_15840 PF00072 Response regulator receiver domain M1S28_15840 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) M1S28_15845 PF00378 Enoyl-CoA hydratase/isomerase M1S28_15850 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase M1S28_15850 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase M1S28_15855 PF01261 Xylose isomerase-like TIM barrel M1S28_15865 PF00106 short chain dehydrogenase M1S28_15870 PF02233 NAD(P) transhydrogenase beta subunit M1S28_15875 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch M1S28_15880 PF01262 Alanine dehydrogenase/PNT, C-terminal domain M1S28_15880 PF05222 Alanine dehydrogenase/PNT, N-terminal domain M1S28_15885 PF00892 EamA-like transporter family M1S28_15895 PF07690 Major Facilitator Superfamily M1S28_15900 PF01207 Dihydrouridine synthase (Dus) M1S28_15910 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M1S28_15910 PF03466 LysR substrate binding domain M1S28_15920 PF00899 ThiF family M1S28_15930 PF00694 Aconitase C-terminal domain M1S28_15930 PF00330 Aconitase family (aconitate hydratase) M1S28_15935 PF01026 TatD related DNase M1S28_15950 PF16658 Class II release factor RF3, C-terminal domain M1S28_15950 PF03144 Elongation factor Tu domain 2 M1S28_15950 PF00009 Elongation factor Tu GTP binding domain M1S28_15970 PF03707 Bacterial signalling protein N terminal repeat M1S28_15970 PF00990 Diguanylate cyclase, GGDEF domain M1S28_15970 PF00563 EAL domain M1S28_15975 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain M1S28_15975 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain M1S28_15980 PF10369 Small subunit of acetolactate synthase M1S28_15985 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain M1S28_15985 PF00205 Thiamine pyrophosphate enzyme, central domain M1S28_15985 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain M1S28_15995 PF08264 Anticodon-binding domain of tRNA M1S28_15995 PF00133 tRNA synthetases class I (I, L, M and V) M1S28_15995 PF13603 Leucyl-tRNA synthetase, Domain 2 M1S28_15995 PF09334 tRNA synthetases class I (M) M1S28_16010 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion M1S28_16015 PF12704 MacB-like periplasmic core domain M1S28_16015 PF02687 FtsX-like permease family M1S28_16015 PF00005 ABC transporter M1S28_16020 PF02321 Outer membrane efflux protein M1S28_16035 PF00929 Exonuclease M1S28_16040 PF03193 RsgA GTPase M1S28_16050 PF00462 Glutaredoxin M1S28_16055 PF02556 Preprotein translocase subunit SecB M1S28_16070 PF00109 Beta-ketoacyl synthase, N-terminal domain M1S28_16070 PF02801 Beta-ketoacyl synthase, C-terminal domain M1S28_16085 PF00109 Beta-ketoacyl synthase, N-terminal domain M1S28_16085 PF02801 Beta-ketoacyl synthase, C-terminal domain M1S28_16095 PF04820 Tryptophan halogenase M1S28_16115 PF00221 Aromatic amino acid lyase M1S28_16130 PF13193 AMP-binding enzyme C-terminal domain M1S28_16130 PF00501 AMP-binding enzyme M1S28_16140 PF00550 Phosphopantetheine attachment site M1S28_16145 PF00550 Phosphopantetheine attachment site M1S28_16160 PF01926 50S ribosome-binding GTPase M1S28_16160 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal M1S28_16165 PF13360 PQQ-like domain M1S28_16175 PF03129 Anticodon binding domain M1S28_16175 PF13393 Histidyl-tRNA synthetase M1S28_16180 PF04551 GcpE protein M1S28_16185 PF13464 Domain of unknown function (DUF4115) M1S28_16195 PF04055 Radical SAM superfamily M1S28_16200 PF00334 Nucleoside diphosphate kinase M1S28_16205 PF04384 Iron-sulphur cluster assembly M1S28_16210 PF01569 PAP2 superfamily M1S28_16215 PF13439 Glycosyltransferase Family 4 M1S28_16215 PF00534 Glycosyl transferases group 1 M1S28_16220 PF00595 PDZ domain M1S28_16220 PF17804 Tail specific protease N-terminal domain M1S28_16220 PF03572 Peptidase family S41 M1S28_16220 PF11818 C-terminal domain of tail specific protease (DUF3340) M1S28_16225 PF00933 Glycosyl hydrolase family 3 N terminal domain M1S28_16235 PF00561 alpha/beta hydrolase fold M1S28_16240 PF00171 Aldehyde dehydrogenase family M1S28_16245 PF00171 Aldehyde dehydrogenase family M1S28_16250 PF01202 Shikimate kinase M1S28_16255 PF02447 GntP family permease M1S28_16260 PF01081 KDPG and KHG aldolase M1S28_16265 PF00920 Dehydratase family M1S28_16270 PF00871 Acetokinase family M1S28_16275 PF07085 DRTGG domain M1S28_16275 PF01515 Phosphate acetyl/butaryl transferase M1S28_16280 PF05681 Fumarate hydratase (Fumerase) M1S28_16280 PF05683 Fumarase C-terminus M1S28_16295 PF07724 AAA domain (Cdc48 subfamily) M1S28_16295 PF10431 C-terminal, D2-small domain, of ClpB protein M1S28_16295 PF06689 ClpX C4-type zinc finger M1S28_16300 PF00574 Clp protease M1S28_16305 PF05697 Bacterial trigger factor protein (TF) M1S28_16305 PF05698 Bacterial trigger factor protein (TF) C-terminus M1S28_16305 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase M1S28_16310 PF00593 TonB dependent receptor M1S28_16310 PF07715 TonB-dependent Receptor Plug Domain M1S28_16315 PF13640 2OG-Fe(II) oxygenase superfamily M1S28_16315 PF18331 PKHD-type hydroxylase C-terminal domain M1S28_16320 PF00682 HMGL-like M1S28_16320 PF08502 LeuA allosteric (dimerisation) domain M1S28_16325 PF00561 alpha/beta hydrolase fold M1S28_16330 PF00561 alpha/beta hydrolase fold M1S28_16330 PF07021 Methionine biosynthesis protein MetW M1S28_16340 PF01725 Ham1 family M1S28_16350 PF02416 mttA/Hcf106 family M1S28_16355 PF02416 mttA/Hcf106 family M1S28_16360 PF00902 Sec-independent protein translocase protein (TatC) M1S28_16380 PF01790 Prolipoprotein diacylglyceryl transferase M1S28_16395 PF00303 Thymidylate synthase M1S28_16400 PF00186 Dihydrofolate reductase M1S28_16410 PF01625 Peptide methionine sulfoxide reductase M1S28_16420 PF01618 MotA/TolQ/ExbB proton channel family M1S28_16430 PF00551 Formyl transferase M1S28_16430 PF01842 ACT domain M1S28_16440 PF00171 Aldehyde dehydrogenase family M1S28_16445 PF00830 Ribosomal L28 family M1S28_16450 PF00471 Ribosomal protein L33 M1S28_16455 PF02254 TrkA-N domain M1S28_16455 PF00999 Sodium/hydrogen exchanger family M1S28_16475 PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) M1S28_16495 PF01396 Topoisomerase DNA binding C4 zinc finger M1S28_16495 PF01751 Toprim domain M1S28_16495 PF01131 DNA topoisomerase M1S28_16495 PF08272 Topoisomerase I zinc-ribbon-like M1S28_16505 PF01638 HxlR-like helix-turn-helix M1S28_16510 PF08240 Alcohol dehydrogenase GroES-like domain M1S28_16510 PF00107 Zinc-binding dehydrogenase M1S28_16515 PF04102 SlyX M1S28_16520 PF00005 ABC transporter M1S28_16520 PF16326 ABC transporter C-terminal domain M1S28_16520 PF12848 ABC transporter M1S28_16525 PF01810 LysE type translocator M1S28_16530 PF03279 Bacterial lipid A biosynthesis acyltransferase M1S28_16540 PF00375 Sodium:dicarboxylate symporter family M1S28_16550 PF01118 Semialdehyde dehydrogenase, NAD binding domain M1S28_16550 PF02774 Semialdehyde dehydrogenase, dimerisation domain M1S28_16570 PF01416 tRNA pseudouridine synthase M1S28_16580 PF01176 Translation initiation factor 1A / IF-1 M1S28_16595 PF00180 Isocitrate/isopropylmalate dehydrogenase M1S28_16605 PF00694 Aconitase C-terminal domain M1S28_16610 PF00330 Aconitase family (aconitate hydratase) M1S28_16620 PF03466 LysR substrate binding domain M1S28_16620 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M1S28_16640 PF00293 NUDIX domain M1S28_16645 PF01590 GAF domain M1S28_16645 PF05524 PEP-utilising enzyme, N-terminal M1S28_16645 PF02896 PEP-utilising enzyme, TIM barrel domain M1S28_16645 PF00391 PEP-utilising enzyme, mobile domain M1S28_16650 PF00141 Peroxidase M1S28_16655 PF12706 Beta-lactamase superfamily domain M1S28_16660 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M1S28_16660 PF03466 LysR substrate binding domain M1S28_16670 PF02798 Glutathione S-transferase, N-terminal domain M1S28_16675 PF08279 HTH domain M1S28_16675 PF13280 WYL domain M1S28_16680 PF13419 Haloacid dehalogenase-like hydrolase M1S28_16685 PF00849 RNA pseudouridylate synthase M1S28_16685 PF01479 S4 domain M1S28_16690 PF00575 S1 RNA binding domain M1S28_16690 PF10150 Ribonuclease E/G family M1S28_16690 PF12111 Polyribonucleotide phosphorylase C terminal M1S28_16695 PF00501 AMP-binding enzyme M1S28_16695 PF13193 AMP-binding enzyme C-terminal domain M1S28_16710 PF03466 LysR substrate binding domain M1S28_16710 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M1S28_16715 PF00106 short chain dehydrogenase M1S28_16720 PF04055 Radical SAM superfamily M1S28_16720 PF06969 HemN C-terminal domain M1S28_16730 PF01554 MatE M1S28_16735 PF08028 Acyl-CoA dehydrogenase, C-terminal domain M1S28_16735 PF02770 Acyl-CoA dehydrogenase, middle domain M1S28_16735 PF02771 Acyl-CoA dehydrogenase, N-terminal domain M1S28_16740 PF08028 Acyl-CoA dehydrogenase, C-terminal domain M1S28_16740 PF02771 Acyl-CoA dehydrogenase, N-terminal domain M1S28_16745 PF03109 ABC1 family M1S28_16750 PF01197 Ribosomal protein L31 M1S28_16765 PF02537 CrcB-like protein, Camphor Resistance (CrcB) M1S28_16785 PF03884 DNA gyrase inhibitor YacG M1S28_16790 PF00753 Metallo-beta-lactamase superfamily M1S28_16795 PF00762 Ferrochelatase M1S28_16805 PF01177 Asp/Glu/Hydantoin racemase M1S28_16820 PF01206 Sulfurtransferase TusA M1S28_16825 PF00571 CBS domain M1S28_16825 PF03471 Transporter associated domain M1S28_16830 PF00795 Carbon-nitrogen hydrolase M1S28_16835 PF01588 Putative tRNA binding domain M1S28_16845 PF08334 Type II secretion system (T2SS), protein G M1S28_16845 PF07963 Prokaryotic N-terminal methylation motif M1S28_16850 PF00482 Type II secretion system (T2SS), protein F M1S28_16855 PF17764 3′ DNA-binding domain (3′BD) M1S28_16855 PF18319 PriA DNA helicase Cys-rich region (CRR) domain M1S28_16855 PF18074 Primosomal protein N C-terminal domain M1S28_16855 PF00271 Helicase conserved C-terminal domain M1S28_16855 PF00270 DEAD/DEAH box helicase M1S28_16860 PF02254 TrkA-N domain M1S28_16860 PF00999 Sodium/hydrogen exchanger family M1S28_16865 PF01430 Hsp33 protein M1S28_16875 PF01556 DnaJ C terminal domain M1S28_16875 PF00226 DnaJ domain M1S28_16885 PF01544 CorA-like Mg2+ transporter protein M1S28_16890 PF03725 3' exoribonuclease family, domain 2 M1S28_16890 PF01138 3' exoribonuclease family, domain 1 M1S28_16890 PF00013 KH domain M1S28_16890 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain M1S28_16890 PF00575 S1 RNA binding domain M1S28_16895 PF00312 Ribosomal protein S15 M1S28_16900 PF00144 Beta-lactamase M1S28_16905 PF13538 UvrD-like helicase C-terminal domain M1S28_16910 PF13361 UvrD-like helicase C-terminal domain M1S28_16910 PF00580 UvrD/REP helicase N-terminal domain M1S28_16910 PF12705 PD-(D/E)XK nuclease superfamily M1S28_16915 PF17946 RecC C-terminal domain M1S28_16925 PF03976 Polyphosphate kinase 2 (PPK2) M1S28_16935 PF01209 ubiE/COQ5 methyltransferase family M1S28_16945 PF03109 ABC1 family M1S28_16950 PF01494 FAD binding domain M1S28_16955 PF01502 Phosphoribosyl-AMP cyclohydrolase M1S28_16970 PF13244 Domain of unknown function (DUF4040) M1S28_16970 PF04039 Domain related to MnhB subunit of Na+/H+ antiporter M1S28_16970 PF00361 Proton-conducting membrane transporter M1S28_16970 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus M1S28_16975 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L M1S28_16980 PF00361 Proton-conducting membrane transporter M1S28_16985 PF01899 Na+/H+ ion antiporter subunit M1S28_16990 PF04066 Multiple resistance and pH regulation protein F (MrpF / PhaF) M1S28_16995 PF03334 Na+/H+ antiporter subunit M1S28_17000 PF02033 Ribosome-binding factor A M1S28_17005 PF00009 Elongation factor Tu GTP binding domain M1S28_17005 PF08364 Bacterial translation initiation factor IF-2 associated region M1S28_17005 PF04760 Translation initiation factor IF-2, N-terminal region M1S28_17005 PF11987 Translation-initiation factor 2 M1S28_17010 PF13184 NusA-like KH domain M1S28_17010 PF08529 NusA N-terminal domain M1S28_17010 PF00575 S1 RNA binding domain M1S28_17015 PF02576 RimP N-terminal domain M1S28_17015 PF17384 RimP C-terminal SH3 domain M1S28_17035 PF03840 Preprotein translocase SecG subunit M1S28_17040 PF00121 Triosephosphate isomerase M1S28_17045 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain M1S28_17045 PF00437 Type II/IV secretion system protein M1S28_17050 PF00482 Type II secretion system (T2SS), protein F M1S28_17060 PF01478 Type IV leader peptidase family M1S28_17060 PF06750 Bacterial Peptidase A24 N-terminal domain M1S28_17065 PF01121 Dephospho-CoA kinase M1S28_17075 PF08032 RNA 2'-O ribose methyltransferase substrate binding M1S28_17075 PF00588 SpoU rRNA Methylase family M1S28_17080 PF06865 Pyrimidine/purine nucleoside phosphorylase M1S28_17090 PF02463 RecF/RecN/SMC N terminal domain M1S28_17095 PF02622 Uncharacterized ACR, COG1678 M1S28_17100 PF03652 Holliday junction resolvase M1S28_17105 PF13533 Biotin-lipoyl like M1S28_17130 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain M1S28_17130 PF02805 Metal binding domain of Ada M1S28_17130 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain M1S28_17130 PF12833 Helix-turn-helix domain M1S28_17135 PF01066 CDP-alcohol phosphatidyltransferase M1S28_17145 PF02151 UvrB/uvrC motif M1S28_17145 PF08459 UvrC Helix-hairpin-helix N-terminal M1S28_17145 PF01541 GIY-YIG catalytic domain M1S28_17165 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain M1S28_17165 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain M1S28_17165 PF00378 Enoyl-CoA hydratase/isomerase M1S28_17170 PF02803 Thiolase, C-terminal domain M1S28_17170 PF00108 Thiolase, N-terminal domain M1S28_17190 PF09278 MerR, DNA binding M1S28_17190 PF00376 MerR family regulatory protein M1S28_17200 PF01323 DSBA-like thioredoxin domain M1S28_17215 PF00183 Hsp90 protein M1S28_17215 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M1S28_17230 PF03553 Na+/H+ antiporter family M1S28_17230 PF13726 Na+-H+ antiporter family M1S28_17235 PF00561 alpha/beta hydrolase fold M1S28_17255 PF04997 RNA polymerase Rpb1, domain 1 M1S28_17255 PF00623 RNA polymerase Rpb1, domain 2 M1S28_17255 PF04983 RNA polymerase Rpb1, domain 3 M1S28_17255 PF05000 RNA polymerase Rpb1, domain 4 M1S28_17255 PF04998 RNA polymerase Rpb1, domain 5 M1S28_17260 PF04563 RNA polymerase beta subunit M1S28_17260 PF10385 RNA polymerase beta subunit external 1 domain M1S28_17260 PF00562 RNA polymerase Rpb2, domain 6 M1S28_17260 PF04560 RNA polymerase Rpb2, domain 7 M1S28_17260 PF04565 RNA polymerase Rpb2, domain 3 M1S28_17260 PF04561 RNA polymerase Rpb2, domain 2 M1S28_17265 PF00542 Ribosomal protein L7/L12 C-terminal domain M1S28_17265 PF16320 Ribosomal protein L7/L12 dimerisation domain M1S28_17270 PF00466 Ribosomal protein L10 M1S28_17275 PF00687 Ribosomal protein L1p/L10e family M1S28_17280 PF00298 Ribosomal protein L11, RNA binding domain M1S28_17280 PF03946 Ribosomal protein L11, N-terminal domain M1S28_17285 PF00467 KOW motif M1S28_17285 PF02357 Transcription termination factor nusG M1S28_17290 PF00584 SecE/Sec61-gamma subunits of protein translocation complex M1S28_17300 PF03144 Elongation factor Tu domain 2 M1S28_17300 PF00009 Elongation factor Tu GTP binding domain M1S28_17300 PF03143 Elongation factor Tu C-terminal domain M1S28_17325 PF00425 chorismate binding enzyme M1S28_17325 PF04715 Anthranilate synthase component I, N terminal region M1S28_17330 PF13419 Haloacid dehalogenase-like hydrolase M1S28_17335 PF12401 Protein of unknown function (DUF2662) M1S28_17335 PF00498 FHA domain M1S28_17340 PF00263 Bacterial type II and III secretion system protein M1S28_17340 PF03958 Bacterial type II/III secretion system short domain M1S28_17355 PF00816 H-NS histone family M1S28_17380 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain M1S28_17380 PF03900 Porphobilinogen deaminase, C-terminal domain M1S28_17385 PF04397 LytTr DNA-binding domain M1S28_17385 PF00072 Response regulator receiver domain M1S28_17390 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M1S28_17390 PF07694 5TMR of 5TMR-LYT M1S28_17390 PF06580 Histidine kinase M1S28_17395 PF14698 Argininosuccinate lyase C-terminal M1S28_17395 PF00206 Lyase M1S28_17400 PF04362 Bacterial Fe(2+) trafficking M1S28_17405 PF01895 PhoU domain M1S28_17410 PF02321 Outer membrane efflux protein M1S28_17415 PF00892 EamA-like transporter family M1S28_17430 PF13667 ThiC-associated domain M1S28_17430 PF01964 Radical SAM ThiC family M1S28_17435 PF00293 NUDIX domain M1S28_17440 PF00149 Calcineurin-like phosphoesterase M1S28_17445 PF01258 Prokaryotic dksA/traR C4-type zinc finger M1S28_17450 PF00749 tRNA synthetases class I (E and Q), catalytic domain M1S28_17455 PF01098 Cell cycle protein M1S28_17460 PF02875 Mur ligase family, glutamate ligase domain M1S28_17460 PF08245 Mur ligase middle domain M1S28_17470 PF07664 Ferrous iron transport protein B C terminus M1S28_17470 PF02421 Ferrous iron transport protein B M1S28_17470 PF07670 Nucleoside recognition M1S28_17480 PF02899 Phage integrase, N-terminal SAM-like domain M1S28_17480 PF00589 Phage integrase family M1S28_17485 PF10411 Disulfide bond isomerase protein N-terminus M1S28_17485 PF13098 Thioredoxin-like domain M1S28_17490 PF01842 ACT domain M1S28_17490 PF00742 Homoserine dehydrogenase M1S28_17490 PF03447 Homoserine dehydrogenase, NAD binding domain M1S28_17495 PF00291 Pyridoxal-phosphate dependent enzyme M1S28_17500 PF00768 D-alanyl-D-alanine carboxypeptidase M1S28_17505 PF00072 Response regulator receiver domain M1S28_17505 PF00196 Bacterial regulatory proteins, luxR family M1S28_17510 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M1S28_17510 PF00512 His Kinase A (phospho-acceptor) domain M1S28_17515 PF02954 Bacterial regulatory protein, Fis family M1S28_17515 PF00072 Response regulator receiver domain M1S28_17515 PF00158 Sigma-54 interaction domain M1S28_17520 PF00595 PDZ domain M1S28_17520 PF03572 Peptidase family S41 M1S28_17525 PF01676 Metalloenzyme superfamily M1S28_17525 PF06415 BPG-independent PGAM N-terminus (iPGM_N) M1S28_17530 PF03739 Lipopolysaccharide export system permease LptF/LptG M1S28_17540 PF02789 Cytosol aminopeptidase family, N-terminal domain M1S28_17540 PF00883 Cytosol aminopeptidase family, catalytic domain M1S28_17560 PF00677 Lumazine binding domain M1S28_17570 PF01872 RibD C-terminal domain M1S28_17570 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region M1S28_17575 PF03477 ATP cone domain M1S28_17580 PF00909 Ammonium Transporter Family M1S28_17585 PF00543 Nitrogen regulatory protein P-II M1S28_17605 PF01636 Phosphotransferase enzyme family M1S28_17610 PF04655 Aminoglycoside/hydroxyurea antibiotic resistance kinase M1S28_17630 PF02909 Tetracyclin repressor-like, C-terminal domain M1S28_17630 PF00440 Bacterial regulatory proteins, tetR family M1S28_17635 PF07690 Major Facilitator Superfamily M1S28_17645 PF01740 STAS domain M1S28_17645 PF00916 Sulfate permease family M1S28_17650 PF00582 Universal stress protein family M1S28_17670 PF00665 Integrase core domain M1S28_17685 PF00392 Bacterial regulatory proteins, gntR family M1S28_17685 PF00155 Aminotransferase class I and II M1S28_17695 PF00701 Dihydrodipicolinate synthetase family M1S28_17710 PF03573 outer membrane porin, OprD family M1S28_17715 PF00719 Inorganic pyrophosphatase M1S28_17730 PF00501 AMP-binding enzyme M1S28_17730 PF13193 AMP-binding enzyme C-terminal domain M1S28_17735 PF00521 DNA gyrase/topoisomerase IV, subunit A M1S28_17735 PF03989 DNA gyrase C-terminal domain, beta-propeller M1S28_17740 PF07690 Major Facilitator Superfamily M1S28_17745 PF03458 UPF0126 domain M1S28_17750 PF02810 SEC-C motif M1S28_17755 PF03471 Transporter associated domain M1S28_17755 PF03741 Integral membrane protein TerC family M1S28_17760 PF03641 Possible lysine decarboxylase M1S28_17765 PF07690 Major Facilitator Superfamily M1S28_17775 PF11798 IMS family HHH motif M1S28_17775 PF11799 impB/mucB/samB family C-terminal domain M1S28_17775 PF00817 impB/mucB/samB family M1S28_17795 PF04055 Radical SAM superfamily M1S28_17795 PF08497 Radical SAM N-terminal M1S28_17795 PF11842 Domain of unknown function (DUF3362) M1S28_17815 PF03358 NADPH-dependent FMN reductase M1S28_17825 PF00291 Pyridoxal-phosphate dependent enzyme M1S28_17885 PF01327 Polypeptide deformylase M1S28_17895 PF02481 DNA recombination-mediator protein A M1S28_17895 PF17782 DprA winged helix domain M1S28_17900 PF01300 Telomere recombination M1S28_17905 PF00892 EamA-like transporter family M1S28_17910 PF00440 Bacterial regulatory proteins, tetR family M1S28_17915 PF07690 Major Facilitator Superfamily M1S28_17925 PF00255 Glutathione peroxidase M1S28_17935 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain M1S28_17940 PF02874 ATP synthase alpha/beta family, beta-barrel domain M1S28_17940 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain M1S28_17945 PF00231 ATP synthase M1S28_17950 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain M1S28_17950 PF00306 ATP synthase alpha/beta chain, C terminal domain M1S28_17950 PF02874 ATP synthase alpha/beta family, beta-barrel domain M1S28_17955 PF00213 ATP synthase delta (OSCP) subunit M1S28_17960 PF00430 ATP synthase B/B' CF(0) M1S28_17965 PF00137 ATP synthase subunit C M1S28_17970 PF00119 ATP synthase A chain M1S28_17990 PF00005 ABC transporter M1S28_17995 PF00950 ABC 3 transport family M1S28_18000 PF01810 LysE type translocator M1S28_18005 PF04261 Dyp-type peroxidase family M1S28_18015 PF03949 Malic enzyme, NAD binding domain M1S28_18015 PF00390 Malic enzyme, N-terminal domain M1S28_18020 PF03485 Arginyl tRNA synthetase N terminal domain M1S28_18020 PF05746 DALR anticodon binding domain M1S28_18020 PF00750 tRNA synthetases class I (R) M1S28_18040 PF02678 Pirin M1S28_18040 PF05726 Pirin C-terminal cupin domain M1S28_18050 PF03551 Transcriptional regulator PadR-like family M1S28_18055 PF01909 Nucleotidyltransferase domain M1S28_18055 PF13427 Domain of unknown function (DUF4111) M1S28_18060 PF02540 NAD synthase M1S28_18060 PF00958 GMP synthase C terminal domain M1S28_18060 PF00117 Glutamine amidotransferase class-I M1S28_18065 PF04286 Protein of unknown function (DUF445) M1S28_18070 PF07681 DoxX M1S28_18075 PF09335 SNARE associated Golgi protein M1S28_18090 PF13614 AAA domain M1S28_18100 PF01722 BolA-like protein M1S28_18110 PF01648 4'-phosphopantetheinyl transferase superfamily M1S28_18115 PF12697 Alpha/beta hydrolase family M1S28_18135 PF00109 Beta-ketoacyl synthase, N-terminal domain M1S28_18135 PF16197 Ketoacyl-synthetase C-terminal extension M1S28_18135 PF02801 Beta-ketoacyl synthase, C-terminal domain M1S28_18135 PF08242 Methyltransferase domain M1S28_18135 PF00550 Phosphopantetheine attachment site M1S28_18135 PF14765 Polyketide synthase dehydratase M1S28_18135 PF00975 Thioesterase domain M1S28_18140 PF02771 Acyl-CoA dehydrogenase, N-terminal domain M1S28_18140 PF02770 Acyl-CoA dehydrogenase, middle domain M1S28_18140 PF00441 Acyl-CoA dehydrogenase, C-terminal domain M1S28_18145 PF00501 AMP-binding enzyme M1S28_18150 PF03472 Autoinducer binding domain M1S28_18150 PF00196 Bacterial regulatory proteins, luxR family M1S28_18160 PF00765 Autoinducer synthase M1S28_18165 PF07690 Major Facilitator Superfamily M1S28_18165 PF00083 Sugar (and other) transporter M1S28_18170 PF00378 Enoyl-CoA hydratase/isomerase M1S28_18175 PF00378 Enoyl-CoA hydratase/isomerase M1S28_18180 PF00441 Acyl-CoA dehydrogenase, C-terminal domain M1S28_18180 PF02770 Acyl-CoA dehydrogenase, middle domain M1S28_18180 PF02771 Acyl-CoA dehydrogenase, N-terminal domain M1S28_18185 PF13193 AMP-binding enzyme C-terminal domain M1S28_18185 PF00501 AMP-binding enzyme M1S28_18190 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase M1S28_18190 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase M1S28_18195 PF00171 Aldehyde dehydrogenase family M1S28_18205 PF00324 Amino acid permease M1S28_18210 PF00324 Amino acid permease M1S28_18215 PF01042 Endoribonuclease L-PSP M1S28_18220 PF00842 Alanine racemase, C-terminal domain M1S28_18220 PF01168 Alanine racemase, N-terminal domain M1S28_18225 PF01266 FAD dependent oxidoreductase M1S28_18230 PF01037 Lrp/AsnC ligand binding domain M1S28_18240 PF00593 TonB dependent receptor M1S28_18240 PF07715 TonB-dependent Receptor Plug Domain M1S28_18255 PF00849 RNA pseudouridylate synthase M1S28_18270 PF00440 Bacterial regulatory proteins, tetR family M1S28_18270 PF08361 MAATS-type transcriptional repressor, C-terminal region M1S28_18280 PF00109 Beta-ketoacyl synthase, N-terminal domain M1S28_18280 PF02801 Beta-ketoacyl synthase, C-terminal domain M1S28_18315 PF00694 Aconitase C-terminal domain M1S28_18315 PF00330 Aconitase family (aconitate hydratase) M1S28_18320 PF00285 Citrate synthase, C-terminal domain M1S28_18330 PF00392 Bacterial regulatory proteins, gntR family M1S28_18330 PF07729 FCD domain M1S28_18340 PF00155 Aminotransferase class I and II M1S28_18345 PF09330 D-lactate dehydrogenase, membrane binding M1S28_18345 PF01565 FAD binding domain M1S28_18350 PF01070 FMN-dependent dehydrogenase M1S28_18355 PF07729 FCD domain M1S28_18355 PF00392 Bacterial regulatory proteins, gntR family M1S28_18360 PF02652 L-lactate permease M1S28_18365 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I M1S28_18365 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III M1S28_18365 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain M1S28_18365 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II M1S28_18370 PF16363 GDP-mannose 4,6 dehydratase M1S28_18375 PF00342 Phosphoglucose isomerase M1S28_18380 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain M1S28_18380 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain M1S28_18380 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain M1S28_18385 PF00483 Nucleotidyl transferase M1S28_18390 PF02397 Bacterial sugar transferase M1S28_18395 PF00535 Glycosyl transferase family 2 M1S28_18425 PF08666 SAF domain M1S28_18425 PF03102 NeuB family M1S28_18440 PF02348 Cytidylyltransferase M1S28_18445 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family M1S28_18450 PF02719 Polysaccharide biosynthesis protein M1S28_18455 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain M1S28_18455 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain M1S28_18455 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain M1S28_18460 PF18412 Outer-membrane lipoprotein Wza C-terminal domain M1S28_18460 PF02563 Polysaccharide biosynthesis/export protein M1S28_18460 PF10531 SLBB domain M1S28_18465 PF01451 Low molecular weight phosphotyrosine protein phosphatase M1S28_18470 PF13614 AAA domain M1S28_18470 PF02706 Chain length determinant protein M1S28_18470 PF13807 G-rich domain on putative tyrosine kinase M1S28_18475 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase M1S28_18475 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase M1S28_18480 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase M1S28_18480 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase M1S28_18485 PF03023 Lipid II flippase MurJ M1S28_18490 PF01510 N-acetylmuramoyl-L-alanine amidase M1S28_18495 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain M1S28_18495 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain M1S28_18505 PF04185 Phosphoesterase family M1S28_18505 PF05506 Domain of unknown function (DUF756) M1S28_18515 PF01138 3' exoribonuclease family, domain 1 M1S28_18515 PF03725 3' exoribonuclease family, domain 2 M1S28_18520 PF00487 Fatty acid desaturase M1S28_18525 PF00175 Oxidoreductase NAD-binding domain M1S28_18530 PF00440 Bacterial regulatory proteins, tetR family M1S28_18535 PF08360 QacR-like protein, C-terminal region M1S28_18535 PF00440 Bacterial regulatory proteins, tetR family M1S28_18540 PF01323 DSBA-like thioredoxin domain M1S28_18550 PF13419 Haloacid dehalogenase-like hydrolase M1S28_18555 PF00106 short chain dehydrogenase M1S28_18570 PF00696 Amino acid kinase family M1S28_18570 PF00583 Acetyltransferase (GNAT) family M1S28_18575 PF09084 NMT1/THI5 like M1S28_18580 PF09084 NMT1/THI5 like M1S28_18585 PF00296 Luciferase-like monooxygenase M1S28_18590 PF00528 Binding-protein-dependent transport system inner membrane component M1S28_18595 PF00005 ABC transporter M1S28_18600 PF08362 YcdC-like protein, C-terminal region M1S28_18600 PF00440 Bacterial regulatory proteins, tetR family M1S28_18605 PF01048 Phosphorylase superfamily M1S28_18615 PF06574 FAD synthetase M1S28_18615 PF01687 Riboflavin kinase M1S28_18620 PF06827 Zinc finger found in FPG and IleRS M1S28_18620 PF00133 tRNA synthetases class I (I, L, M and V) M1S28_18620 PF08264 Anticodon-binding domain of tRNA M1S28_18625 PF01252 Signal peptidase (SPase) II M1S28_18630 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase M1S28_18670 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD M1S28_18675 PF07859 alpha/beta hydrolase fold M1S28_18695 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M1S28_18695 PF03466 LysR substrate binding domain M1S28_18700 PF01025 GrpE M1S28_18705 PF00012 Hsp70 protein M1S28_18725 PF13406 Transglycosylase SLT domain M1S28_18730 PF02222 ATP-grasp domain M1S28_18730 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain M1S28_18735 PF00731 AIR carboxylase M1S28_18745 PF08245 Mur ligase middle domain M1S28_18745 PF02875 Mur ligase family, glutamate ligase domain M1S28_18745 PF01225 Mur ligase family, catalytic domain M1S28_18755 PF01569 PAP2 superfamily M1S28_18760 PF03741 Integral membrane protein TerC family M1S28_18770 PF03738 Glutathionylspermidine synthase preATP-grasp M1S28_18775 PF00355 Rieske [2Fe-2S] domain M1S28_18780 PF01979 Amidohydrolase family M1S28_18785 PF00156 Phosphoribosyl transferase domain M1S28_18795 PF10411 Disulfide bond isomerase protein N-terminus M1S28_18795 PF13098 Thioredoxin-like domain M1S28_18800 PF16916 Dimerisation domain of Zinc Transporter M1S28_18800 PF01545 Cation efflux family M1S28_18805 PF02583 Metal-sensitive transcriptional repressor M1S28_18810 PF01926 50S ribosome-binding GTPase M1S28_18810 PF10396 GTP-binding protein TrmE N-terminus M1S28_18810 PF12631 MnmE helical domain M1S28_18815 PF02096 60Kd inner membrane protein M1S28_18815 PF14849 YidC periplasmic domain M1S28_18820 PF01809 Putative membrane protein insertion efficiency factor M1S28_18825 PF00825 Ribonuclease P M1S28_18830 PF00468 Ribosomal protein L34 M1S28_18835 PF01051 Initiator Replication protein M1S28_18860 PF07715 TonB-dependent Receptor Plug Domain M1S28_18860 PF00593 TonB dependent receptor M1S28_18880 PF05973 Phage derived protein Gp49-like (DUF891) M1S28_18895 PF03389 MobA/MobL family M1S28_18900 PF13614 AAA domain M1S28_18990 PF10544 T5orf172 domain M1S28_18995 PF13614 AAA domain M1S28_19015 PF00905 Penicillin binding protein transpeptidase domain M1S28_19060 PF00226 DnaJ domain M1S28_19060 PF01556 DnaJ C terminal domain M1S28_19060 PF00684 DnaJ central domain M1S28_19085 PF18272 single-stranded DNA binding TraI N-terminal subdomain M1S28_19085 PF07057 DNA helicase TraI M1S28_19085 PF18340 DNA relaxase TraI 2B/2B-like domain M1S28_19085 PF08751 TrwC relaxase M1S28_19140 PF00239 Resolvase, N terminal domain M1S28_19140 PF02796 Helix-turn-helix domain of resolvase M1S28_19190 PF13098 Thioredoxin-like domain M1S28_19190 PF10411 Disulfide bond isomerase protein N-terminus M1S28_19220 PF06834 TraU protein M1S28_19230 PF06986 Type-1V conjugative transfer system mating pair stabilisation M1S28_19240 PF06122 Conjugative relaxosome accessory transposon protein M1S28_19260 PF00817 impB/mucB/samB family M1S28_19260 PF11799 impB/mucB/samB family C-terminal domain M1S28_19260 PF13438 Domain of unknown function (DUF4113) M1S28_19310 PF00565 Staphylococcal nuclease homologue M1S28_19325 PF00816 H-NS histone family M1S28_19395 PF10410 DnaB-helicase binding domain of primase M1S28_19395 PF08275 DNA primase catalytic core, N-terminal domain M1S28_19395 PF01807 CHC2 zinc finger M1S28_19425 PF00625 Guanylate kinase M1S28_19440 PF07015 VirC1 protein M1S28_19450 PF00589 Phage integrase family M1S28_19450 PF02899 Phage integrase, N-terminal SAM-like domain M1S28_19485 PF14579 Helix-hairpin-helix motif M1S28_19485 PF17657 Bacterial DNA polymerase III alpha subunit finger domain M1S28_19485 PF07733 Bacterial DNA polymerase III alpha NTPase domain M1S28_19485 PF02811 PHP domain M1S28_19495 PF07733 Bacterial DNA polymerase III alpha NTPase domain M1S28_19495 PF17657 Bacterial DNA polymerase III alpha subunit finger domain M1S28_19495 PF14579 Helix-hairpin-helix motif M1S28_19495 PF02811 PHP domain M1S28_19510 PF01612 3'-5' exonuclease M1S28_19510 PF01367 5'-3' exonuclease, C-terminal SAM fold M1S28_19510 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain M1S28_19510 PF00476 DNA polymerase family A M1S28_19515 PF03161 LAGLIDADG DNA endonuclease family M1S28_19515 PF00154 recA bacterial DNA recombination protein M1S28_19540 PF02463 RecF/RecN/SMC N terminal domain M1S28_19540 PF06470 SMC proteins Flexible Hinge Domain M1S28_19560 PF00317 Ribonucleotide reductase, all-alpha domain M1S28_19560 PF03477 ATP cone domain M1S28_19560 PF02867 Ribonucleotide reductase, barrel domain M1S28_19565 PF00268 Ribonucleotide reductase, small chain M1S28_19605 PF00929 Exonuclease M1S28_19640 PF13737 Transposase DDE domain M1S28_19650 PF00440 Bacterial regulatory proteins, tetR family M1S28_19650 PF16925 Tetracyclin repressor-like, C-terminal domain M1S28_19660 PF00724 NADH:flavin oxidoreductase / NADH oxidase family M1S28_19670 PF00465 Iron-containing alcohol dehydrogenase M1S28_19685 PF00756 Putative esterase M1S28_19690 PF08240 Alcohol dehydrogenase GroES-like domain M1S28_19690 PF00107 Zinc-binding dehydrogenase M1S28_19695 PF02583 Metal-sensitive transcriptional repressor M1S28_19710 PF00107 Zinc-binding dehydrogenase M1S28_19710 PF08240 Alcohol dehydrogenase GroES-like domain M1S28_19710 PF13823 Alcohol dehydrogenase GroES-associated M1S28_19775 PF04650 YSIRK type signal peptide M1S28_19775 PF03373 Octapeptide repeat M1S28_19775 PF02216 B domain M1S28_19775 PF00746 LPXTG cell wall anchor motif M1S28_19775 PF01476 LysM domain M1S28_19790 PF03461 TRCF domain M1S28_19790 PF02559 CarD-like/TRCF domain M1S28_19790 PF00270 DEAD/DEAH box helicase M1S28_19790 PF00271 Helicase conserved C-terminal domain M1S28_19790 PF17757 UvrB interaction domain M1S28_19810 PF00005 ABC transporter M1S28_19810 PF09383 NIL domain