locus-tag class description M1S55_00005 PF00308 Bacterial dnaA protein M1S55_00005 PF08299 Bacterial dnaA protein helix-turn-helix M1S55_00005 PF11638 DnaA N-terminal domain M1S55_00010 PF00712 DNA polymerase III beta subunit, N-terminal domain M1S55_00010 PF02767 DNA polymerase III beta subunit, central domain M1S55_00010 PF02768 DNA polymerase III beta subunit, C-terminal domain M1S55_00015 PF02463 RecF/RecN/SMC N terminal domain M1S55_00020 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M1S55_00020 PF18053 DNA gyrase B subunit insert domain M1S55_00020 PF01751 Toprim domain M1S55_00020 PF00204 DNA gyrase B M1S55_00020 PF00986 DNA gyrase B subunit, carboxyl terminus M1S55_00030 PF09335 SNARE associated Golgi protein M1S55_00035 PF00005 ABC transporter M1S55_00035 PF12848 ABC transporter M1S55_00055 PF01521 Iron-sulphur cluster biosynthesis M1S55_00060 PF00561 alpha/beta hydrolase fold M1S55_00065 PF03702 Anhydro-N-acetylmuramic acid kinase M1S55_00070 PF00579 tRNA synthetases class I (W and Y) M1S55_00110 PF00209 Sodium:neurotransmitter symporter family M1S55_00120 PF01189 16S rRNA methyltransferase RsmB/F M1S55_00120 PF01029 NusB family M1S55_00125 PF02911 Formyl transferase, C-terminal domain M1S55_00125 PF00551 Formyl transferase M1S55_00130 PF00920 Dehydratase family M1S55_00145 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M1S55_00145 PF03466 LysR substrate binding domain M1S55_00150 PF00860 Permease family M1S55_00155 PF00311 Phosphoenolpyruvate carboxylase M1S55_00160 PF08361 MAATS-type transcriptional repressor, C-terminal region M1S55_00160 PF00440 Bacterial regulatory proteins, tetR family M1S55_00165 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion M1S55_00170 PF00873 AcrB/AcrD/AcrF family M1S55_00180 PF00684 DnaJ central domain M1S55_00180 PF01556 DnaJ C terminal domain M1S55_00180 PF00226 DnaJ domain M1S55_00190 PF01113 Dihydrodipicolinate reductase, N-terminus M1S55_00190 PF05173 Dihydrodipicolinate reductase, C-terminus M1S55_00200 PF07690 Major Facilitator Superfamily M1S55_00205 PF00248 Aldo/keto reductase family M1S55_00210 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M1S55_00210 PF03466 LysR substrate binding domain M1S55_00225 PF00392 Bacterial regulatory proteins, gntR family M1S55_00225 PF00155 Aminotransferase class I and II M1S55_00230 PF08240 Alcohol dehydrogenase GroES-like domain M1S55_00230 PF00107 Zinc-binding dehydrogenase M1S55_00235 PF03352 Methyladenine glycosylase M1S55_00250 PF00730 HhH-GPD superfamily base excision DNA repair protein M1S55_00250 PF10576 Iron-sulfur binding domain of endonuclease III M1S55_00250 PF00633 Helix-hairpin-helix motif M1S55_00250 PF14815 NUDIX domain M1S55_00265 PF07043 Protein of unknown function (DUF1328) M1S55_00270 PF03692 Putative zinc- or iron-chelating domain M1S55_00275 PF07995 Glucose / Sorbosone dehydrogenase M1S55_00280 PF12002 MgsA AAA+ ATPase C terminal M1S55_00280 PF16193 AAA C-terminal domain M1S55_00280 PF00004 ATPase family associated with various cellular activities (AAA) M1S55_00285 PF01226 Formate/nitrite transporter M1S55_00295 PF01259 SAICAR synthetase M1S55_00305 PF00701 Dihydrodipicolinate synthetase family M1S55_00310 PF00857 Isochorismatase family M1S55_00315 PF01758 Sodium Bile acid symporter family M1S55_00320 PF01554 MatE M1S55_00325 PF04463 Protein of unknown function (DUF523) M1S55_00330 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily M1S55_00340 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily M1S55_00345 PF14497 Glutathione S-transferase, C-terminal domain M1S55_00345 PF02798 Glutathione S-transferase, N-terminal domain M1S55_00355 PF00324 Amino acid permease M1S55_00365 PF02492 CobW/HypB/UreG, nucleotide-binding domain M1S55_00365 PF07683 Cobalamin synthesis protein cobW C-terminal domain M1S55_00375 PF00392 Bacterial regulatory proteins, gntR family M1S55_00375 PF07702 UTRA domain M1S55_00385 PF17391 Urocanase N-terminal domain M1S55_00385 PF17392 Urocanase C-terminal domain M1S55_00385 PF01175 Urocanase Rossmann-like domain M1S55_00390 PF00221 Aromatic amino acid lyase M1S55_00395 PF00324 Amino acid permease M1S55_00400 PF01979 Amidohydrolase family M1S55_00405 PF00491 Arginase family M1S55_00425 PF01177 Asp/Glu/Hydantoin racemase M1S55_00430 PF01380 SIS domain M1S55_00435 PF12804 MobA-like NTP transferase domain M1S55_00435 PF00132 Bacterial transferase hexapeptide (six repeats) M1S55_00435 PF14602 Hexapeptide repeat of succinyl-transferase M1S55_00440 PF04608 Phosphatidylglycerophosphatase A M1S55_00445 PF00586 AIR synthase related protein, N-terminal domain M1S55_00445 PF02769 AIR synthase related protein, C-terminal domain M1S55_00450 PF01029 NusB family M1S55_00455 PF00885 6,7-dimethyl-8-ribityllumazine synthase M1S55_00460 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase M1S55_00460 PF00925 GTP cyclohydrolase II M1S55_00485 PF02580 D-Tyr-tRNA(Tyr) deacylase M1S55_00490 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family M1S55_00490 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain M1S55_00495 PF00581 Rhodanese-like domain M1S55_00500 PF02666 Phosphatidylserine decarboxylase M1S55_00505 PF03069 Acetamidase/Formamidase family M1S55_00525 PF11808 Phosphate regulon sensor protein PhoR M1S55_00525 PF00989 PAS fold M1S55_00525 PF00512 His Kinase A (phospho-acceptor) domain M1S55_00525 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M1S55_00530 PF00486 Transcriptional regulatory protein, C terminal M1S55_00530 PF00072 Response regulator receiver domain M1S55_00540 PF00106 short chain dehydrogenase M1S55_00545 PF01554 MatE M1S55_00550 PF00155 Aminotransferase class I and II M1S55_00555 PF04286 Protein of unknown function (DUF445) M1S55_00570 PF04262 Glutamate-cysteine ligase M1S55_00575 PF02600 Disulfide bond formation protein DsbB M1S55_00580 PF10106 Uncharacterized protein conserved in bacteria (DUF2345) M1S55_00580 PF13296 Putative type VI secretion system Rhs element Vgr M1S55_00580 PF04717 Type VI secretion system, phage-baseplate injector M1S55_00585 PF00877 NlpC/P60 family M1S55_00585 PF01476 LysM domain M1S55_00600 PF05728 Uncharacterised protein family (UPF0227) M1S55_00605 PF01751 Toprim domain M1S55_00605 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M1S55_00605 PF00986 DNA gyrase B subunit, carboxyl terminus M1S55_00605 PF00204 DNA gyrase B M1S55_00610 PF00106 short chain dehydrogenase M1S55_00615 PF04115 Ureidoglycolate lyase M1S55_00620 PF03561 Allantoicase repeat M1S55_00625 PF01494 FAD binding domain M1S55_00635 PF00860 Permease family M1S55_00640 PF00576 HIUase/Transthyretin family M1S55_00670 PF02683 Cytochrome C biogenesis protein transmembrane region M1S55_00670 PF11412 Disulphide bond corrector protein DsbC M1S55_00675 PF00990 Diguanylate cyclase, GGDEF domain M1S55_00675 PF07694 5TMR of 5TMR-LYT M1S55_00680 PF07859 alpha/beta hydrolase fold M1S55_00690 PF03960 ArsC family M1S55_00695 PF03372 Endonuclease/Exonuclease/phosphatase family M1S55_00700 PF00156 Phosphoribosyl transferase domain M1S55_00705 PF07715 TonB-dependent Receptor Plug Domain M1S55_00705 PF00593 TonB dependent receptor M1S55_00715 PF02951 Prokaryotic glutathione synthetase, N-terminal domain M1S55_00715 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain M1S55_00720 PF03033 Glycosyltransferase family 28 N-terminal domain M1S55_00720 PF04101 Glycosyltransferase family 28 C-terminal domain M1S55_00725 PF01225 Mur ligase family, catalytic domain M1S55_00725 PF02875 Mur ligase family, glutamate ligase domain M1S55_00725 PF08245 Mur ligase middle domain M1S55_00730 PF07478 D-ala D-ala ligase C-terminus M1S55_00730 PF01820 D-ala D-ala ligase N-terminus M1S55_00735 PF03799 Cell division protein FtsQ M1S55_00735 PF08478 POTRA domain, FtsQ-type M1S55_00740 PF02491 SHS2 domain inserted in FTSA M1S55_00745 PF00091 Tubulin/FtsZ family, GTPase domain M1S55_00745 PF12327 FtsZ family, C-terminal domain M1S55_00750 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase M1S55_00760 PF01551 Peptidase family M23 M1S55_00765 PF00456 Transketolase, thiamine diphosphate binding domain M1S55_00765 PF17831 Pyruvate dehydrogenase E1 component middle domain M1S55_00770 PF02817 e3 binding domain M1S55_00770 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) M1S55_00770 PF00364 Biotin-requiring enzyme M1S55_00780 PF01169 Uncharacterized protein family UPF0016 M1S55_00800 PF00258 Flavodoxin M1S55_00800 PF01613 Flavin reductase like domain M1S55_00805 PF03692 Putative zinc- or iron-chelating domain M1S55_00810 PF00571 CBS domain M1S55_00810 PF00478 IMP dehydrogenase / GMP reductase domain M1S55_00815 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III M1S55_00815 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain M1S55_00815 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I M1S55_00815 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II M1S55_00820 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region M1S55_00820 PF01243 Pyridoxamine 5'-phosphate oxidase M1S55_00825 PF01368 DHH family M1S55_00825 PF17768 RecJ OB domain M1S55_00825 PF02272 DHHA1 domain M1S55_00845 PF00724 NADH:flavin oxidoreductase / NADH oxidase family M1S55_00850 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) M1S55_00855 PF04452 RNA methyltransferase M1S55_00860 PF00924 Mechanosensitive ion channel M1S55_00870 PF16177 Acetyl-coenzyme A synthetase N-terminus M1S55_00870 PF13193 AMP-binding enzyme C-terminal domain M1S55_00870 PF00501 AMP-binding enzyme M1S55_00875 PF00857 Isochorismatase family M1S55_00880 PF01037 Lrp/AsnC ligand binding domain M1S55_00885 PF00872 Transposase, Mutator family M1S55_00890 PF00296 Luciferase-like monooxygenase M1S55_00895 PF03358 NADPH-dependent FMN reductase M1S55_00900 PF00072 Response regulator receiver domain M1S55_00900 PF00196 Bacterial regulatory proteins, luxR family M1S55_00910 PF01627 Hpt domain M1S55_00910 PF00072 Response regulator receiver domain M1S55_00910 PF00512 His Kinase A (phospho-acceptor) domain M1S55_00910 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M1S55_00910 PF00672 HAMP domain M1S55_00915 PF04341 Protein of unknown function, DUF485 M1S55_00920 PF00474 Sodium:solute symporter family M1S55_00930 PF02028 BCCT, betaine/carnitine/choline family transporter M1S55_00940 PF00990 Diguanylate cyclase, GGDEF domain M1S55_00950 PF17755 UvrA DNA-binding domain M1S55_00950 PF17760 UvrA interaction domain M1S55_00950 PF00005 ABC transporter M1S55_00955 PF00440 Bacterial regulatory proteins, tetR family M1S55_00955 PF16925 Tetracyclin repressor-like, C-terminal domain M1S55_00960 PF00107 Zinc-binding dehydrogenase M1S55_00960 PF08240 Alcohol dehydrogenase GroES-like domain M1S55_00970 PF06942 GlpM protein M1S55_00975 PF08543 Phosphomethylpyrimidine kinase M1S55_00975 PF03070 TENA/THI-4/PQQC family M1S55_00975 PF02581 Thiamine monophosphate synthase M1S55_00985 PF07690 Major Facilitator Superfamily M1S55_00990 PF00436 Single-strand binding protein family M1S55_01000 PF03591 AzlC protein M1S55_01010 PF00324 Amino acid permease M1S55_01015 PF00155 Aminotransferase class I and II M1S55_01015 PF00392 Bacterial regulatory proteins, gntR family M1S55_01020 PF00202 Aminotransferase class-III M1S55_01025 PF00171 Aldehyde dehydrogenase family M1S55_01030 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M1S55_01035 PF00857 Isochorismatase family M1S55_01040 PF02678 Pirin M1S55_01040 PF05726 Pirin C-terminal cupin domain M1S55_01045 PF01593 Flavin containing amine oxidoreductase M1S55_01065 PF07690 Major Facilitator Superfamily M1S55_01070 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M1S55_01070 PF03466 LysR substrate binding domain M1S55_01090 PF00248 Aldo/keto reductase family M1S55_01095 PF12833 Helix-turn-helix domain M1S55_01095 PF02311 AraC-like ligand binding domain M1S55_01125 PF01638 HxlR-like helix-turn-helix M1S55_01130 PF02525 Flavodoxin-like fold M1S55_01155 PF02705 K+ potassium transporter M1S55_01180 PF00230 Major intrinsic protein M1S55_01195 PF00977 Histidine biosynthesis protein M1S55_01200 PF01636 Phosphotransferase enzyme family M1S55_01215 PF03992 Antibiotic biosynthesis monooxygenase M1S55_01230 PF00977 Histidine biosynthesis protein M1S55_01245 PF00117 Glutamine amidotransferase class-I M1S55_01250 PF00475 Imidazoleglycerol-phosphate dehydratase M1S55_01270 PF00583 Acetyltransferase (GNAT) family M1S55_01275 PF13336 Acetyl-CoA hydrolase/transferase C-terminal domain M1S55_01275 PF02550 Acetyl-CoA hydrolase/transferase N-terminal domain M1S55_01285 PF00672 HAMP domain M1S55_01285 PF00512 His Kinase A (phospho-acceptor) domain M1S55_01285 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M1S55_01290 PF00486 Transcriptional regulatory protein, C terminal M1S55_01290 PF00072 Response regulator receiver domain M1S55_01295 PF17674 HHH domain M1S55_01295 PF00575 S1 RNA binding domain M1S55_01295 PF09371 Tex-like protein N-terminal domain M1S55_01295 PF16921 Tex protein YqgF-like domain M1S55_01300 PF00916 Sulfate permease family M1S55_01300 PF01740 STAS domain M1S55_01305 PF00106 short chain dehydrogenase M1S55_01310 PF01053 Cys/Met metabolism PLP-dependent enzyme M1S55_01315 PF00005 ABC transporter M1S55_01315 PF12848 ABC transporter M1S55_01340 PF04191 Phospholipid methyltransferase M1S55_01360 PF00529 HlyD membrane-fusion protein of T1SS M1S55_01360 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion M1S55_01365 PF00873 AcrB/AcrD/AcrF family M1S55_01370 PF01545 Cation efflux family M1S55_01400 PF00324 Amino acid permease M1S55_01415 PF00749 tRNA synthetases class I (E and Q), catalytic domain M1S55_01430 PF01795 MraW methylase family M1S55_01440 PF00905 Penicillin binding protein transpeptidase domain M1S55_01440 PF03717 Penicillin-binding Protein dimerisation domain M1S55_01445 PF08245 Mur ligase middle domain M1S55_01445 PF02875 Mur ligase family, glutamate ligase domain M1S55_01445 PF01225 Mur ligase family, catalytic domain M1S55_01450 PF08245 Mur ligase middle domain M1S55_01450 PF02875 Mur ligase family, glutamate ligase domain M1S55_01450 PF01225 Mur ligase family, catalytic domain M1S55_01455 PF00953 Glycosyl transferase family 4 M1S55_01465 PF13847 Methyltransferase domain M1S55_01470 PF00912 Transglycosylase M1S55_01470 PF17092 Penicillin-binding protein OB-like domain M1S55_01470 PF00905 Penicillin binding protein transpeptidase domain M1S55_01475 PF11104 Type IV pilus assembly protein PilM; M1S55_01480 PF05137 Fimbrial assembly protein (PilN) M1S55_01485 PF04350 Pilus assembly protein, PilO M1S55_01495 PF11741 AMIN domain M1S55_01495 PF00263 Bacterial type II and III secretion system protein M1S55_01495 PF03958 Bacterial type II/III secretion system short domain M1S55_01495 PF07660 Secretin and TonB N terminus short domain M1S55_01500 PF01202 Shikimate kinase M1S55_01505 PF01761 3-dehydroquinate synthase M1S55_01515 PF00310 Glutamine amidotransferases class-II M1S55_01515 PF04898 Glutamate synthase central domain M1S55_01515 PF01645 Conserved region in glutamate synthase M1S55_01515 PF01493 GXGXG motif M1S55_01520 PF07992 Pyridine nucleotide-disulphide oxidoreductase M1S55_01520 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster M1S55_01530 PF04011 LemA family M1S55_01535 PF04536 TPM domain M1S55_01545 PF07963 Prokaryotic N-terminal methylation motif M1S55_01545 PF00114 Pilin (bacterial filament) M1S55_01555 PF15864 Protein glycosylation ligase M1S55_01555 PF04932 O-Antigen ligase M1S55_01555 PF11846 Virulence factor membrane-bound polymerase, C-terminal M1S55_01560 PF00210 Ferritin-like domain M1S55_01565 PF04324 BFD-like [2Fe-2S] binding domain M1S55_01570 PF01042 Endoribonuclease L-PSP M1S55_01575 PF13291 ACT domain M1S55_01575 PF04607 Region found in RelA / SpoT proteins M1S55_01575 PF02824 TGS domain M1S55_01585 PF01192 RNA polymerase Rpb6 M1S55_01590 PF00625 Guanylate kinase M1S55_01595 PF02401 LytB protein M1S55_01635 PF00886 Ribosomal protein S16 M1S55_01640 PF01782 RimM N-terminal domain M1S55_01640 PF05239 PRC-barrel domain M1S55_01645 PF01746 tRNA (Guanine-1)-methyltransferase M1S55_01650 PF01245 Ribosomal protein L19 M1S55_01655 PF00561 alpha/beta hydrolase fold M1S55_01660 PF03280 Proteobacterial lipase chaperone protein M1S55_01670 PF01925 Sulfite exporter TauE/SafE M1S55_01680 PF00892 EamA-like transporter family M1S55_01685 PF00892 EamA-like transporter family M1S55_01690 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain M1S55_01690 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain M1S55_01695 PF01565 FAD binding domain M1S55_01695 PF02913 FAD linked oxidases, C-terminal domain M1S55_01705 PF03992 Antibiotic biosynthesis monooxygenase M1S55_01710 PF02525 Flavodoxin-like fold M1S55_01720 PF07690 Major Facilitator Superfamily M1S55_01725 PF12805 FUSC-like inner membrane protein yccS M1S55_01730 PF00080 Copper/zinc superoxide dismutase (SODC) M1S55_01735 PF01594 AI-2E family transporter M1S55_01740 PF13614 AAA domain M1S55_01770 PF00324 Amino acid permease M1S55_01775 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase M1S55_01775 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain M1S55_01780 PF00202 Aminotransferase class-III M1S55_01785 PF04958 Arginine N-succinyltransferase beta subunit M1S55_01790 PF00171 Aldehyde dehydrogenase family M1S55_01795 PF04996 Succinylarginine dihydrolase M1S55_01800 PF04952 Succinylglutamate desuccinylase / Aspartoacylase family M1S55_01815 PF05922 Peptidase inhibitor I9 M1S55_01815 PF00082 Subtilase family M1S55_01830 PF03466 LysR substrate binding domain M1S55_01830 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M1S55_01835 PF00892 EamA-like transporter family M1S55_01845 PF02092 Glycyl-tRNA synthetase beta subunit M1S55_01845 PF05746 DALR anticodon binding domain M1S55_01850 PF02091 Glycyl-tRNA synthetase alpha subunit M1S55_01875 PF00571 CBS domain M1S55_01880 PF04024 PspC domain M1S55_01890 PF02771 Acyl-CoA dehydrogenase, N-terminal domain M1S55_01890 PF02770 Acyl-CoA dehydrogenase, middle domain M1S55_01890 PF12806 Acetyl-CoA dehydrogenase C-terminal like M1S55_01890 PF00441 Acyl-CoA dehydrogenase, C-terminal domain M1S55_01900 PF08501 Shikimate dehydrogenase substrate binding domain M1S55_01900 PF18317 Shikimate 5'-dehydrogenase C-terminal domain M1S55_01900 PF01488 Shikimate / quinate 5-dehydrogenase M1S55_01905 PF01218 Coproporphyrinogen III oxidase M1S55_01910 PF00925 GTP cyclohydrolase II M1S55_01915 PF02779 Transketolase, pyrimidine binding domain M1S55_01915 PF13292 1-deoxy-D-xylulose-5-phosphate synthase M1S55_01915 PF02780 Transketolase, C-terminal domain M1S55_01920 PF00459 Inositol monophosphatase family M1S55_01925 PF00270 DEAD/DEAH box helicase M1S55_01925 PF00271 Helicase conserved C-terminal domain M1S55_01925 PF12343 Cold shock protein DEAD box A M1S55_01925 PF03880 DbpA RNA binding domain M1S55_01935 PF00005 ABC transporter M1S55_01940 PF02405 Permease MlaE M1S55_01950 PF05494 MlaC protein M1S55_01960 PF01544 CorA-like Mg2+ transporter protein M1S55_01965 PF03641 Possible lysine decarboxylase M1S55_01970 PF00293 NUDIX domain M1S55_01975 PF00156 Phosphoribosyl transferase domain M1S55_01980 PF00271 Helicase conserved C-terminal domain M1S55_01980 PF17191 RecG wedge domain M1S55_01980 PF00270 DEAD/DEAH box helicase M1S55_02015 PF01926 50S ribosome-binding GTPase M1S55_02020 PF02082 Transcriptional regulator M1S55_02025 PF00175 Oxidoreductase NAD-binding domain M1S55_02025 PF00042 Globin M1S55_02025 PF00970 Oxidoreductase FAD-binding domain M1S55_02030 PF05872 Bacterial protein of unknown function (DUF853) M1S55_02035 PF01053 Cys/Met metabolism PLP-dependent enzyme M1S55_02040 PF00117 Glutamine amidotransferase class-I M1S55_02045 PF00338 Ribosomal protein S10p/S20e M1S55_02050 PF00297 Ribosomal protein L3 M1S55_02055 PF00573 Ribosomal protein L4/L1 family M1S55_02060 PF00276 Ribosomal protein L23 M1S55_02065 PF03947 Ribosomal Proteins L2, C-terminal domain M1S55_02065 PF00181 Ribosomal Proteins L2, RNA binding domain M1S55_02070 PF00203 Ribosomal protein S19 M1S55_02075 PF00237 Ribosomal protein L22p/L17e M1S55_02085 PF00252 Ribosomal protein L16p/L10e M1S55_02090 PF00831 Ribosomal L29 protein M1S55_02095 PF00366 Ribosomal protein S17 M1S55_02100 PF00238 Ribosomal protein L14p/L23e M1S55_02105 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 M1S55_02105 PF00467 KOW motif M1S55_02110 PF00673 ribosomal L5P family C-terminus M1S55_02110 PF00281 Ribosomal protein L5 M1S55_02115 PF00253 Ribosomal protein S14p/S29e M1S55_02120 PF00410 Ribosomal protein S8 M1S55_02125 PF00347 Ribosomal protein L6 M1S55_02130 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast M1S55_02135 PF03719 Ribosomal protein S5, C-terminal domain M1S55_02135 PF00333 Ribosomal protein S5, N-terminal domain M1S55_02140 PF00327 Ribosomal protein L30p/L7e M1S55_02145 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A M1S55_02150 PF00344 SecY translocase M1S55_02155 PF00444 Ribosomal protein L36 M1S55_02160 PF00416 Ribosomal protein S13/S18 M1S55_02165 PF00411 Ribosomal protein S11 M1S55_02170 PF00163 Ribosomal protein S4/S9 N-terminal domain M1S55_02170 PF01479 S4 domain M1S55_02175 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain M1S55_02175 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain M1S55_02175 PF01000 RNA polymerase Rpb3/RpoA insert domain M1S55_02180 PF01196 Ribosomal protein L17 M1S55_02185 PF00743 Flavin-binding monooxygenase-like M1S55_02190 PF02771 Acyl-CoA dehydrogenase, N-terminal domain M1S55_02190 PF02770 Acyl-CoA dehydrogenase, middle domain M1S55_02190 PF00441 Acyl-CoA dehydrogenase, C-terminal domain M1S55_02195 PF03937 Flavinator of succinate dehydrogenase M1S55_02225 PF09526 Probable metal-binding protein (DUF2387) M1S55_02230 PF01432 Peptidase family M3 M1S55_02235 PF00575 S1 RNA binding domain M1S55_02235 PF00773 RNB domain M1S55_02235 PF08461 Ribonuclease R winged-helix domain M1S55_02235 PF17876 Cold shock domain M1S55_02235 PF08206 Ribonuclease B OB domain M1S55_02280 PF01557 Fumarylacetoacetate (FAA) hydrolase family M1S55_02285 PF12833 Helix-turn-helix domain M1S55_02290 PF00892 EamA-like transporter family M1S55_02295 PF03631 Virulence factor BrkB M1S55_02300 PF03358 NADPH-dependent FMN reductase M1S55_02325 PF02130 Uncharacterized protein family UPF0054 M1S55_02330 PF02562 PhoH-like protein M1S55_02335 PF04055 Radical SAM superfamily M1S55_02335 PF01938 TRAM domain M1S55_02335 PF00919 Uncharacterized protein family UPF0004 M1S55_02340 PF01551 Peptidase family M23 M1S55_02340 PF01464 Transglycosylase SLT domain M1S55_02340 PF10145 Phage-related minor tail protein M1S55_02350 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain M1S55_02350 PF00056 lactate/malate dehydrogenase, NAD binding domain M1S55_02370 PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ M1S55_02375 PF01066 CDP-alcohol phosphatidyltransferase M1S55_02420 PF00441 Acyl-CoA dehydrogenase, C-terminal domain M1S55_02420 PF02770 Acyl-CoA dehydrogenase, middle domain M1S55_02420 PF02771 Acyl-CoA dehydrogenase, N-terminal domain M1S55_02425 PF17932 Tetracyclin repressor-like, C-terminal domain M1S55_02425 PF00440 Bacterial regulatory proteins, tetR family M1S55_02440 PF01039 Carboxyl transferase domain M1S55_02445 PF02771 Acyl-CoA dehydrogenase, N-terminal domain M1S55_02445 PF02770 Acyl-CoA dehydrogenase, middle domain M1S55_02445 PF00441 Acyl-CoA dehydrogenase, C-terminal domain M1S55_02455 PF02785 Biotin carboxylase C-terminal domain M1S55_02455 PF00289 Biotin carboxylase, N-terminal domain M1S55_02455 PF00364 Biotin-requiring enzyme M1S55_02455 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain M1S55_02465 PF04386 Stringent starvation protein B M1S55_02470 PF00043 Glutathione S-transferase, C-terminal domain M1S55_02470 PF13417 Glutathione S-transferase, N-terminal domain M1S55_02475 PF00380 Ribosomal protein S9/S16 M1S55_02480 PF00572 Ribosomal protein L13 M1S55_02485 PF04166 Pyridoxal phosphate biosynthetic protein PdxA M1S55_02490 PF00398 Ribosomal RNA adenine dimethylase M1S55_02495 PF00149 Calcineurin-like phosphoesterase M1S55_02515 PF13167 GTP-binding GTPase N-terminal M1S55_02515 PF01926 50S ribosome-binding GTPase M1S55_02515 PF16360 GTP-binding GTPase Middle Region M1S55_02525 PF13091 PLD-like domain M1S55_02530 PF00149 Calcineurin-like phosphoesterase M1S55_02530 PF10518 TAT (twin-arginine translocation) pathway signal sequence M1S55_02535 PF01389 OmpA-like transmembrane domain M1S55_02535 PF00691 OmpA family M1S55_02540 PF17152 Periplasmic sensor domain M1S55_02540 PF00990 Diguanylate cyclase, GGDEF domain M1S55_02575 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain M1S55_02575 PF07992 Pyridine nucleotide-disulphide oxidoreductase M1S55_02585 PF00753 Metallo-beta-lactamase superfamily M1S55_02585 PF04273 Putative phosphatase (DUF442) M1S55_02590 PF00561 alpha/beta hydrolase fold M1S55_02595 PF00085 Thioredoxin M1S55_02600 PF03061 Thioesterase superfamily M1S55_02610 PF04461 Protein of unknown function (DUF520) M1S55_02620 PF05430 S-adenosyl-L-methionine-dependent methyltransferase M1S55_02620 PF01266 FAD dependent oxidoreductase M1S55_02630 PF03795 YCII-related domain M1S55_02635 PF04279 Intracellular septation protein A M1S55_02640 PF02811 PHP domain M1S55_02645 PF01062 Bestrophin, RFP-TM, chloride channel M1S55_02650 PF04002 RadC-like JAB domain M1S55_02655 PF04127 DNA / pantothenate metabolism flavoprotein M1S55_02655 PF02441 Flavoprotein M1S55_02660 PF07549 SecD/SecF GG Motif M1S55_02660 PF02355 Protein export membrane protein M1S55_02665 PF07549 SecD/SecF GG Motif M1S55_02665 PF02355 Protein export membrane protein M1S55_02665 PF13721 SecD export protein N-terminal TM region M1S55_02670 PF02699 Preprotein translocase subunit M1S55_02675 PF01702 Queuine tRNA-ribosyltransferase M1S55_02690 PF02547 Queuosine biosynthesis protein M1S55_02720 PF07689 KaiB domain M1S55_02720 PF00512 His Kinase A (phospho-acceptor) domain M1S55_02720 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M1S55_02725 PF03710 Glutamate-ammonia ligase adenylyltransferase M1S55_02725 PF08335 GlnD PII-uridylyltransferase M1S55_02730 PF01063 Amino-transferase class IV M1S55_02745 PF01522 Polysaccharide deacetylase M1S55_02750 PF00535 Glycosyl transferase family 2 M1S55_02755 PF13439 Glycosyltransferase Family 4 M1S55_02755 PF00534 Glycosyl transferases group 1 M1S55_02780 PF17102 Stealth protein CR3, conserved region 3 M1S55_02780 PF11380 Stealth protein CR2, conserved region 2 M1S55_02780 PF17101 Stealth protein CR1, conserved region 1 M1S55_02785 PF02938 GAD domain M1S55_02785 PF00152 tRNA synthetases class II (D, K and N) M1S55_02785 PF01336 OB-fold nucleic acid binding domain M1S55_02795 PF07715 TonB-dependent Receptor Plug Domain M1S55_02795 PF00593 TonB dependent receptor M1S55_02815 PF06146 Phosphate-starvation-inducible E M1S55_02820 PF00043 Glutathione S-transferase, C-terminal domain M1S55_02820 PF02798 Glutathione S-transferase, N-terminal domain M1S55_02825 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M1S55_02825 PF03466 LysR substrate binding domain M1S55_02830 PF02770 Acyl-CoA dehydrogenase, middle domain M1S55_02830 PF02771 Acyl-CoA dehydrogenase, N-terminal domain M1S55_02830 PF12806 Acetyl-CoA dehydrogenase C-terminal like M1S55_02830 PF00441 Acyl-CoA dehydrogenase, C-terminal domain M1S55_02835 PF02770 Acyl-CoA dehydrogenase, middle domain M1S55_02835 PF12806 Acetyl-CoA dehydrogenase C-terminal like M1S55_02835 PF00441 Acyl-CoA dehydrogenase, C-terminal domain M1S55_02835 PF02771 Acyl-CoA dehydrogenase, N-terminal domain M1S55_02845 PF00512 His Kinase A (phospho-acceptor) domain M1S55_02845 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M1S55_02845 PF00672 HAMP domain M1S55_02850 PF00486 Transcriptional regulatory protein, C terminal M1S55_02850 PF00072 Response regulator receiver domain M1S55_02855 PF02696 Uncharacterized ACR, YdiU/UPF0061 family M1S55_02875 PF01923 Cobalamin adenosyltransferase M1S55_02880 PF00593 TonB dependent receptor M1S55_02880 PF07715 TonB-dependent Receptor Plug Domain M1S55_02885 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase M1S55_02890 PF00291 Pyridoxal-phosphate dependent enzyme M1S55_02915 PF00290 Tryptophan synthase alpha chain M1S55_02920 PF01039 Carboxyl transferase domain M1S55_02925 PF02875 Mur ligase family, glutamate ligase domain M1S55_02925 PF08245 Mur ligase middle domain M1S55_02940 PF00753 Metallo-beta-lactamase superfamily M1S55_02945 PF00578 AhpC/TSA family M1S55_02945 PF10417 C-terminal domain of 1-Cys peroxiredoxin M1S55_02950 PF07517 SecA DEAD-like domain M1S55_02950 PF02810 SEC-C motif M1S55_02950 PF01043 SecA preprotein cross-linking domain M1S55_02950 PF07516 SecA Wing and Scaffold domain M1S55_02960 PF00083 Sugar (and other) transporter M1S55_02960 PF07690 Major Facilitator Superfamily M1S55_02965 PF03006 Haemolysin-III related M1S55_02990 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain M1S55_02990 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain M1S55_02990 PF00378 Enoyl-CoA hydratase/isomerase M1S55_02995 PF02803 Thiolase, C-terminal domain M1S55_02995 PF00108 Thiolase, N-terminal domain M1S55_03000 PF12833 Helix-turn-helix domain M1S55_03000 PF02311 AraC-like ligand binding domain M1S55_03005 PF02515 CoA-transferase family III M1S55_03010 PF04966 Carbohydrate-selective porin, OprB family M1S55_03015 PF01011 PQQ enzyme repeat M1S55_03020 PF01077 Nitrite and sulphite reductase 4Fe-4S domain M1S55_03020 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain M1S55_03030 PF00893 Small Multidrug Resistance protein M1S55_03040 PF02803 Thiolase, C-terminal domain M1S55_03040 PF00108 Thiolase, N-terminal domain M1S55_03050 PF13505 Outer membrane protein beta-barrel domain M1S55_03050 PF00691 OmpA family M1S55_03060 PF01139 tRNA-splicing ligase RtcB M1S55_03065 PF00324 Amino acid permease M1S55_03070 PF05175 Methyltransferase small domain M1S55_03070 PF08468 Methyltransferase small domain N-terminal M1S55_03075 PF00860 Permease family M1S55_03080 PF00009 Elongation factor Tu GTP binding domain M1S55_03080 PF00679 Elongation factor G C-terminus M1S55_03080 PF03144 Elongation factor Tu domain 2 M1S55_03085 PF01741 Large-conductance mechanosensitive channel, MscL M1S55_03100 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain M1S55_03100 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain M1S55_03100 PF06827 Zinc finger found in FPG and IleRS M1S55_03105 PF02245 Methylpurine-DNA glycosylase (MPG) M1S55_03125 PF00724 NADH:flavin oxidoreductase / NADH oxidase family M1S55_03140 PF13098 Thioredoxin-like domain M1S55_03140 PF10411 Disulfide bond isomerase protein N-terminus M1S55_03145 PF01571 Aminomethyltransferase folate-binding domain M1S55_03155 PF04343 Protein of unknown function, DUF488 M1S55_03160 PF03831 PhnA domain M1S55_03160 PF08274 PhnA Zinc-Ribbon M1S55_03165 PF07411 Domain of unknown function (DUF1508) M1S55_03170 PF04073 Aminoacyl-tRNA editing domain M1S55_03170 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) M1S55_03170 PF03129 Anticodon binding domain M1S55_03175 PF00873 AcrB/AcrD/AcrF family M1S55_03190 PF00072 Response regulator receiver domain M1S55_03195 PF00072 Response regulator receiver domain M1S55_03200 PF01584 CheW-like domain M1S55_03205 PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term M1S55_03205 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain M1S55_03210 PF01627 Hpt domain M1S55_03210 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M1S55_03210 PF01584 CheW-like domain M1S55_03210 PF00072 Response regulator receiver domain M1S55_03220 PF01546 Peptidase family M20/M25/M40 M1S55_03220 PF07687 Peptidase dimerisation domain M1S55_03225 PF08085 Entericidin EcnA/B family M1S55_03235 PF04304 Protein of unknown function (DUF454) M1S55_03240 PF17969 L,D-transpeptidase C-terminal domain M1S55_03240 PF03734 L,D-transpeptidase catalytic domain M1S55_03280 PF00667 FAD binding domain M1S55_03280 PF00258 Flavodoxin M1S55_03280 PF00175 Oxidoreductase NAD-binding domain M1S55_03290 PF12805 FUSC-like inner membrane protein yccS M1S55_03295 PF07690 Major Facilitator Superfamily M1S55_03300 PF00881 Nitroreductase family M1S55_03315 PF01235 Sodium:alanine symporter family M1S55_03320 PF01734 Patatin-like phospholipase M1S55_03325 PF13291 ACT domain M1S55_03325 PF00291 Pyridoxal-phosphate dependent enzyme M1S55_03330 PF05992 SbmA/BacA-like family M1S55_03360 PF02934 GatB/GatE catalytic domain M1S55_03360 PF02637 GatB domain M1S55_03365 PF01425 Amidase M1S55_03370 PF02686 Glu-tRNAGln amidotransferase C subunit M1S55_03380 PF04085 rod shape-determining protein MreC M1S55_03385 PF04093 rod shape-determining protein MreD M1S55_03390 PF02545 Maf-like protein M1S55_03395 PF10150 Ribonuclease E/G family M1S55_03395 PF00575 S1 RNA binding domain M1S55_03405 PF06974 Protein of unknown function (DUF1298) M1S55_03405 PF03007 Wax ester synthase-like Acyl-CoA acyltransferase domain M1S55_03410 PF01507 Phosphoadenosine phosphosulfate reductase family M1S55_03425 PF02525 Flavodoxin-like fold M1S55_03445 PF02673 Bacitracin resistance protein BacA M1S55_03450 PF06719 AraC-type transcriptional regulator N-terminus M1S55_03450 PF12833 Helix-turn-helix domain M1S55_03455 PF00109 Beta-ketoacyl synthase, N-terminal domain M1S55_03455 PF02801 Beta-ketoacyl synthase, C-terminal domain M1S55_03455 PF08659 KR domain M1S55_03455 PF00550 Phosphopantetheine attachment site M1S55_03455 PF14765 Polyketide synthase dehydratase M1S55_03455 PF16197 Ketoacyl-synthetase C-terminal extension M1S55_03455 PF08990 Erythronolide synthase docking M1S55_03455 PF00698 Acyl transferase domain M1S55_03455 PF08240 Alcohol dehydrogenase GroES-like domain M1S55_03455 PF09277 Erythronolide synthase, docking M1S55_03460 PF01965 DJ-1/PfpI family M1S55_03470 PF00324 Amino acid permease M1S55_03475 PF04303 PrpF protein M1S55_03480 PF00348 Polyprenyl synthetase M1S55_03485 PF04237 YjbR M1S55_03490 PF01145 SPFH domain / Band 7 family M1S55_03500 PF01734 Patatin-like phospholipase M1S55_03525 PF00072 Response regulator receiver domain M1S55_03525 PF00486 Transcriptional regulatory protein, C terminal M1S55_03530 PF08521 Two-component sensor kinase N-terminal M1S55_03530 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M1S55_03530 PF00512 His Kinase A (phospho-acceptor) domain M1S55_03540 PF00909 Ammonium Transporter Family M1S55_03545 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M1S55_03545 PF03466 LysR substrate binding domain M1S55_03565 PF08264 Anticodon-binding domain of tRNA M1S55_03565 PF00133 tRNA synthetases class I (I, L, M and V) M1S55_03565 PF10458 Valyl tRNA synthetase tRNA binding arm M1S55_03585 PF01906 Putative heavy-metal-binding M1S55_03590 PF01906 Putative heavy-metal-binding M1S55_03595 PF02321 Outer membrane efflux protein M1S55_03600 PF00873 AcrB/AcrD/AcrF family M1S55_03605 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion M1S55_03605 PF00529 HlyD membrane-fusion protein of T1SS M1S55_03610 PF01569 PAP2 superfamily M1S55_03620 PF00348 Polyprenyl synthetase M1S55_03630 PF00829 Ribosomal prokaryotic L21 protein M1S55_03635 PF01016 Ribosomal L27 protein M1S55_03640 PF03548 Outer membrane lipoprotein carrier protein LolA M1S55_03650 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) M1S55_03650 PF02403 Seryl-tRNA synthetase N-terminal domain M1S55_03655 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases M1S55_03655 PF14824 Sirohaem biosynthesis protein central M1S55_03655 PF10414 Sirohaem synthase dimerisation region M1S55_03660 PF00588 SpoU rRNA Methylase family M1S55_03665 PF01638 HxlR-like helix-turn-helix M1S55_03670 PF03358 NADPH-dependent FMN reductase M1S55_03675 PF13520 Amino acid permease M1S55_03680 PF00465 Iron-containing alcohol dehydrogenase M1S55_03690 PF03099 Biotin/lipoate A/B protein ligase family M1S55_03695 PF04359 Protein of unknown function (DUF493) M1S55_03700 PF04539 Sigma-70 region 3 M1S55_03700 PF04542 Sigma-70 region 2 M1S55_03700 PF04545 Sigma-70, region 4 M1S55_03700 PF03979 Sigma-70 factor, region 1.1 M1S55_03700 PF00140 Sigma-70 factor, region 1.2 M1S55_03700 PF04546 Sigma-70, non-essential region M1S55_03720 PF00581 Rhodanese-like domain M1S55_03720 PF17773 UPF0176 acylphosphatase like domain M1S55_03730 PF00285 Citrate synthase, C-terminal domain M1S55_03735 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit M1S55_03740 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit M1S55_03745 PF02910 Fumarate reductase flavoprotein C-term M1S55_03745 PF00890 FAD binding domain M1S55_03750 PF13085 2Fe-2S iron-sulfur cluster binding domain M1S55_03765 PF00676 Dehydrogenase E1 component M1S55_03765 PF16870 2-oxoglutarate dehydrogenase C-terminal M1S55_03765 PF02779 Transketolase, pyrimidine binding domain M1S55_03765 PF16078 2-oxoglutarate dehydrogenase N-terminus M1S55_03770 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) M1S55_03770 PF00364 Biotin-requiring enzyme M1S55_03770 PF02817 e3 binding domain M1S55_03775 PF07992 Pyridine nucleotide-disulphide oxidoreductase M1S55_03775 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain M1S55_03780 PF08442 ATP-grasp domain M1S55_03780 PF00549 CoA-ligase M1S55_03785 PF00549 CoA-ligase M1S55_03785 PF02629 CoA binding domain M1S55_03790 PF00579 tRNA synthetases class I (W and Y) M1S55_03795 PF05661 Protein of unknown function (DUF808) M1S55_03800 PF04228 Putative neutral zinc metallopeptidase M1S55_03805 PF00999 Sodium/hydrogen exchanger family M1S55_03820 PF09587 Bacterial capsule synthesis protein PGA_cap M1S55_03830 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain M1S55_03835 PF00582 Universal stress protein family M1S55_03840 PF00132 Bacterial transferase hexapeptide (six repeats) M1S55_03845 PF01272 Transcription elongation factor, GreA/GreB, C-term M1S55_03845 PF03449 Transcription elongation factor, N-terminal M1S55_03850 PF02142 MGS-like domain M1S55_03850 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain M1S55_03850 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain M1S55_03855 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain M1S55_03855 PF00117 Glutamine amidotransferase class-I M1S55_03870 PF01985 CRS1 / YhbY (CRM) domain M1S55_03875 PF01728 FtsJ-like methyltransferase M1S55_03880 PF00004 ATPase family associated with various cellular activities (AAA) M1S55_03880 PF17862 AAA+ lid domain M1S55_03880 PF06480 FtsH Extracellular M1S55_03880 PF01434 Peptidase family M41 M1S55_03885 PF00809 Pterin binding enzyme M1S55_03905 PF09423 PhoD-like phosphatase M1S55_03905 PF16655 PhoD-like phosphatase, N-terminal domain M1S55_03920 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain M1S55_03920 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain M1S55_03935 PF00083 Sugar (and other) transporter M1S55_03940 PF02782 FGGY family of carbohydrate kinases, C-terminal domain M1S55_03940 PF00370 FGGY family of carbohydrate kinases, N-terminal domain M1S55_03945 PF01266 FAD dependent oxidoreductase M1S55_03945 PF16901 C-terminal domain of alpha-glycerophosphate oxidase M1S55_03950 PF00821 Phosphoenolpyruvate carboxykinase C-terminal P-loop domain M1S55_03950 PF17297 Phosphoenolpyruvate carboxykinase N-terminal domain M1S55_03955 PF00781 Diacylglycerol kinase catalytic domain M1S55_03960 PF00149 Calcineurin-like phosphoesterase M1S55_03970 PF00166 Chaperonin 10 Kd subunit M1S55_03975 PF00118 TCP-1/cpn60 chaperonin family M1S55_03980 PF01219 Prokaryotic diacylglycerol kinase M1S55_03985 PF00753 Metallo-beta-lactamase superfamily M1S55_03990 PF03009 Glycerophosphoryl diester phosphodiesterase family M1S55_03995 PF00873 AcrB/AcrD/AcrF family M1S55_04005 PF01435 Peptidase family M48 M1S55_04010 PF01464 Transglycosylase SLT domain M1S55_04015 PF01171 PP-loop family M1S55_04025 PF01464 Transglycosylase SLT domain M1S55_04025 PF00497 Bacterial extracellular solute-binding proteins, family 3 M1S55_04030 PF03449 Transcription elongation factor, N-terminal M1S55_04030 PF01272 Transcription elongation factor, GreA/GreB, C-term M1S55_04045 PF00975 Thioesterase domain M1S55_04045 PF00501 AMP-binding enzyme M1S55_04045 PF00550 Phosphopantetheine attachment site M1S55_04045 PF13193 AMP-binding enzyme C-terminal domain M1S55_04045 PF00668 Condensation domain M1S55_04075 PF00881 Nitroreductase family M1S55_04090 PF02595 Glycerate kinase family M1S55_04095 PF00384 Molybdopterin oxidoreductase M1S55_04100 PF02634 FdhD/NarQ family M1S55_04105 PF06803 Protein of unknown function (DUF1232) M1S55_04110 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain M1S55_04110 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain M1S55_04110 PF11890 Domain of unknown function (DUF3410) M1S55_04115 PF00152 tRNA synthetases class II (D, K and N) M1S55_04125 PF18073 Rubredoxin metal binding domain M1S55_04130 PF00324 Amino acid permease M1S55_04140 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain M1S55_04140 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain M1S55_04145 PF01678 Diaminopimelate epimerase M1S55_04150 PF01810 LysE type translocator M1S55_04155 PF02899 Phage integrase, N-terminal SAM-like domain M1S55_04155 PF00589 Phage integrase family M1S55_04160 PF01012 Electron transfer flavoprotein domain M1S55_04165 PF01012 Electron transfer flavoprotein domain M1S55_04165 PF00766 Electron transfer flavoprotein FAD-binding domain M1S55_04170 PF03989 DNA gyrase C-terminal domain, beta-propeller M1S55_04170 PF00521 DNA gyrase/topoisomerase IV, subunit A M1S55_04185 PF00535 Glycosyl transferase family 2 M1S55_04205 PF13533 Biotin-lipoyl like M1S55_04215 PF00266 Aminotransferase class-V M1S55_04230 PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 M1S55_04240 PF02687 FtsX-like permease family M1S55_04240 PF12704 MacB-like periplasmic core domain M1S55_04245 PF00005 ABC transporter M1S55_04250 PF13567 Domain of unknown function (DUF4131) M1S55_04250 PF03772 Competence protein M1S55_04250 PF00753 Metallo-beta-lactamase superfamily M1S55_04260 PF01343 Peptidase family S49 M1S55_04260 PF06965 Na+/H+ antiporter 1 M1S55_04265 PF12697 Alpha/beta hydrolase family M1S55_04270 PF00551 Formyl transferase M1S55_04275 PF02769 AIR synthase related protein, C-terminal domain M1S55_04275 PF00586 AIR synthase related protein, N-terminal domain M1S55_04280 PF01594 AI-2E family transporter M1S55_04285 PF00308 Bacterial dnaA protein M1S55_04285 PF11638 DnaA N-terminal domain M1S55_04285 PF08299 Bacterial dnaA protein helix-turn-helix M1S55_04325 PF08032 RNA 2'-O ribose methyltransferase substrate binding M1S55_04325 PF00588 SpoU rRNA Methylase family M1S55_04330 PF00316 Fructose-1-6-bisphosphatase, N-terminal domain M1S55_04340 PF00691 OmpA family M1S55_04345 PF07676 WD40-like Beta Propeller Repeat M1S55_04345 PF04052 TolB amino-terminal domain M1S55_04355 PF02472 Biopolymer transport protein ExbD/TolR M1S55_04360 PF01618 MotA/TolQ/ExbB proton channel family M1S55_04365 PF03061 Thioesterase superfamily M1S55_04370 PF01546 Peptidase family M20/M25/M40 M1S55_04370 PF07687 Peptidase dimerisation domain M1S55_04375 PF05496 Holliday junction DNA helicase RuvB P-loop domain M1S55_04375 PF05491 RuvB C-terminal winged helix domain M1S55_04375 PF17864 RuvB AAA lid domain M1S55_04380 PF01330 RuvA N terminal domain M1S55_04380 PF07499 RuvA, C-terminal domain M1S55_04385 PF01966 HD domain M1S55_04390 PF02769 AIR synthase related protein, C-terminal domain M1S55_04390 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain M1S55_04390 PF18076 Formylglycinamide ribonucleotide amidotransferase N-terminal M1S55_04395 PF07690 Major Facilitator Superfamily M1S55_04400 PF01784 NIF3 (NGG1p interacting factor 3) M1S55_04405 PF00378 Enoyl-CoA hydratase/isomerase M1S55_04410 PF01467 Cytidylyltransferase-like M1S55_04410 PF00293 NUDIX domain M1S55_04420 PF00578 AhpC/TSA family M1S55_04435 PF06508 Queuosine biosynthesis protein QueC M1S55_04445 PF00132 Bacterial transferase hexapeptide (six repeats) M1S55_04445 PF14602 Hexapeptide repeat of succinyl-transferase M1S55_04445 PF14805 Tetrahydrodipicolinate N-succinyltransferase N-terminal M1S55_04455 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M1S55_04455 PF03466 LysR substrate binding domain M1S55_04460 PF00005 ABC transporter M1S55_04460 PF12857 TOBE-like domain M1S55_04465 PF00528 Binding-protein-dependent transport system inner membrane component M1S55_04470 PF00528 Binding-protein-dependent transport system inner membrane component M1S55_04485 PF01063 Amino-transferase class IV M1S55_04490 PF02618 YceG-like family M1S55_04495 PF02223 Thymidylate kinase M1S55_04505 PF00890 FAD binding domain M1S55_04505 PF02910 Fumarate reductase flavoprotein C-term M1S55_04510 PF13180 PDZ domain M1S55_04520 PF00679 Elongation factor G C-terminus M1S55_04520 PF00009 Elongation factor Tu GTP binding domain M1S55_04520 PF03144 Elongation factor Tu domain 2 M1S55_04520 PF06421 GTP-binding protein LepA C-terminus M1S55_04525 PF10502 Signal peptidase, peptidase S26 M1S55_04535 PF00035 Double-stranded RNA binding motif M1S55_04535 PF14622 Ribonuclease-III-like M1S55_04540 PF07650 KH domain M1S55_04540 PF01926 50S ribosome-binding GTPase M1S55_04550 PF02565 Recombination protein O C terminal M1S55_04550 PF11967 Recombination protein O N terminal M1S55_04555 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ M1S55_04560 PF06175 tRNA-(MS[2]IO[6]A)-hydroxylase (MiaE) M1S55_04565 PF00106 short chain dehydrogenase M1S55_04595 PF00155 Aminotransferase class I and II M1S55_04605 PF17151 Periplasmic sensor domain M1S55_04605 PF00990 Diguanylate cyclase, GGDEF domain M1S55_04615 PF00271 Helicase conserved C-terminal domain M1S55_04615 PF04851 Type III restriction enzyme, res subunit M1S55_04615 PF02151 UvrB/uvrC motif M1S55_04615 PF12344 Ultra-violet resistance protein B M1S55_04615 PF17757 UvrB interaction domain M1S55_04625 PF00892 EamA-like transporter family M1S55_04630 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain M1S55_04630 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain M1S55_04645 PF01018 GTP1/OBG M1S55_04645 PF01926 50S ribosome-binding GTPase M1S55_04650 PF00696 Amino acid kinase family M1S55_04650 PF01472 PUA domain M1S55_04660 PF07759 Protein of unknown function (DUF1615) M1S55_04665 PF01207 Dihydrouridine synthase (Dus) M1S55_04670 PF03060 Nitronate monooxygenase M1S55_04685 PF02350 UDP-N-acetylglucosamine 2-epimerase M1S55_04715 PF03441 FAD binding domain of DNA photolyase M1S55_04715 PF00875 DNA photolyase M1S55_04720 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase M1S55_04730 PF07943 Penicillin-binding protein 5, C-terminal domain M1S55_04730 PF00768 D-alanyl-D-alanine carboxypeptidase M1S55_04740 PF03971 Monomeric isocitrate dehydrogenase M1S55_04745 PF00849 RNA pseudouridylate synthase M1S55_04750 PF00180 Isocitrate/isopropylmalate dehydrogenase M1S55_04770 PF06779 Uncharacterised MFS-type transporter YbfB M1S55_04775 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M1S55_04775 PF03466 LysR substrate binding domain M1S55_04780 PF00375 Sodium:dicarboxylate symporter family M1S55_04785 PF02567 Phenazine biosynthesis-like protein M1S55_04790 PF00675 Insulinase (Peptidase family M16) M1S55_04790 PF05193 Peptidase M16 inactive domain M1S55_04815 PF02581 Thiamine monophosphate synthase M1S55_04820 PF00202 Aminotransferase class-III M1S55_04830 PF00849 RNA pseudouridylate synthase M1S55_04835 PF18337 RapA N-terminal Tudor like domain M1S55_04835 PF12137 RNA polymerase recycling family C-terminal M1S55_04835 PF00176 SNF2 family N-terminal domain M1S55_04835 PF18339 RapA N-terminal Tudor like domain 1 M1S55_04835 PF00271 Helicase conserved C-terminal domain M1S55_04845 PF00440 Bacterial regulatory proteins, tetR family M1S55_04850 PF00111 2Fe-2S iron-sulfur cluster binding domain M1S55_04850 PF00175 Oxidoreductase NAD-binding domain M1S55_04850 PF00970 Oxidoreductase FAD-binding domain M1S55_04855 PF00487 Fatty acid desaturase M1S55_04865 PF17754 MftR C-terminal domain M1S55_04865 PF00440 Bacterial regulatory proteins, tetR family M1S55_04880 PF00282 Pyridoxal-dependent decarboxylase conserved domain M1S55_04885 PF00171 Aldehyde dehydrogenase family M1S55_04890 PF01037 Lrp/AsnC ligand binding domain M1S55_04895 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain M1S55_04895 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain M1S55_04895 PF00205 Thiamine pyrophosphate enzyme, central domain M1S55_04900 PF00324 Amino acid permease M1S55_04905 PF12849 PBP superfamily domain M1S55_04910 PF00528 Binding-protein-dependent transport system inner membrane component M1S55_04915 PF00528 Binding-protein-dependent transport system inner membrane component M1S55_04920 PF00005 ABC transporter M1S55_04925 PF01343 Peptidase family S49 M1S55_04925 PF08496 Peptidase family S49 N-terminal M1S55_04940 PF00206 Lyase M1S55_04940 PF08328 Adenylosuccinate lyase C-terminal M1S55_04945 PF04356 Protein of unknown function (DUF489) M1S55_04955 PF00293 NUDIX domain M1S55_04955 PF13344 Haloacid dehalogenase-like hydrolase M1S55_04960 PF00132 Bacterial transferase hexapeptide (six repeats) M1S55_04965 PF00768 D-alanyl-D-alanine carboxypeptidase M1S55_04965 PF07943 Penicillin-binding protein 5, C-terminal domain M1S55_04980 PF01975 Survival protein SurE M1S55_04985 PF01476 LysM domain M1S55_04985 PF01551 Peptidase family M23 M1S55_04990 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M1S55_04990 PF03466 LysR substrate binding domain M1S55_04995 PF13654 AAA domain M1S55_04995 PF05362 Lon protease (S16) C-terminal proteolytic domain M1S55_05000 PF07690 Major Facilitator Superfamily M1S55_05005 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily M1S55_05010 PF13593 SBF-like CPA transporter family (DUF4137) M1S55_05015 PF01197 Ribosomal protein L31 M1S55_05030 PF04055 Radical SAM superfamily M1S55_05035 PF01132 Elongation factor P (EF-P) OB domain M1S55_05035 PF08207 Elongation factor P (EF-P) KOW-like domain M1S55_05035 PF09285 Elongation factor P, C-terminal M1S55_05040 PF13722 5TM C-terminal transporter carbon starvation CstA M1S55_05040 PF02554 Carbon starvation protein CstA M1S55_05045 PF04328 Selenoprotein, putative M1S55_05080 PF13556 PucR C-terminal helix-turn-helix domain M1S55_05080 PF06018 CodY GAF-like domain M1S55_05080 PF17853 GGDEF-like domain M1S55_05095 PF00171 Aldehyde dehydrogenase family M1S55_05100 PF00324 Amino acid permease M1S55_05105 PF03466 LysR substrate binding domain M1S55_05105 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M1S55_05110 PF02028 BCCT, betaine/carnitine/choline family transporter M1S55_05115 PF02028 BCCT, betaine/carnitine/choline family transporter M1S55_05120 PF00848 Ring hydroxylating alpha subunit (catalytic domain) M1S55_05120 PF00355 Rieske [2Fe-2S] domain M1S55_05125 PF00171 Aldehyde dehydrogenase family M1S55_05135 PF18113 Rubredoxin binding C-terminal domain M1S55_05135 PF07992 Pyridine nucleotide-disulphide oxidoreductase M1S55_05140 PF01266 FAD dependent oxidoreductase M1S55_05140 PF05430 S-adenosyl-L-methionine-dependent methyltransferase M1S55_05160 PF00892 EamA-like transporter family M1S55_05170 PF02604 Antitoxin Phd_YefM, type II toxin-antitoxin system M1S55_05175 PF00083 Sugar (and other) transporter M1S55_05180 PF13378 Enolase C-terminal domain-like M1S55_05180 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain M1S55_05185 PF08240 Alcohol dehydrogenase GroES-like domain M1S55_05185 PF14765 Polyketide synthase dehydratase M1S55_05185 PF08990 Erythronolide synthase docking M1S55_05185 PF00698 Acyl transferase domain M1S55_05185 PF09277 Erythronolide synthase, docking M1S55_05185 PF00550 Phosphopantetheine attachment site M1S55_05185 PF00109 Beta-ketoacyl synthase, N-terminal domain M1S55_05185 PF02801 Beta-ketoacyl synthase, C-terminal domain M1S55_05185 PF08659 KR domain M1S55_05185 PF16197 Ketoacyl-synthetase C-terminal extension M1S55_05190 PF00440 Bacterial regulatory proteins, tetR family M1S55_05210 PF17954 Quercetinase C-terminal cupin domain M1S55_05210 PF02678 Pirin M1S55_05220 PF13309 HTH domain M1S55_05220 PF08348 YheO-like PAS domain M1S55_05230 PF00501 AMP-binding enzyme M1S55_05230 PF13193 AMP-binding enzyme C-terminal domain M1S55_05230 PF00668 Condensation domain M1S55_05230 PF00550 Phosphopantetheine attachment site M1S55_05235 PF00501 AMP-binding enzyme M1S55_05235 PF13193 AMP-binding enzyme C-terminal domain M1S55_05235 PF00668 Condensation domain M1S55_05235 PF00550 Phosphopantetheine attachment site M1S55_05235 PF00975 Thioesterase domain M1S55_05240 PF01032 FecCD transport family M1S55_05245 PF01032 FecCD transport family M1S55_05250 PF00005 ABC transporter M1S55_05255 PF01497 Periplasmic binding protein M1S55_05260 PF00593 TonB dependent receptor M1S55_05260 PF07715 TonB-dependent Receptor Plug Domain M1S55_05265 PF13434 L-lysine 6-monooxygenase (NADPH-requiring) M1S55_05270 PF00668 Condensation domain M1S55_05270 PF00550 Phosphopantetheine attachment site M1S55_05270 PF00501 AMP-binding enzyme M1S55_05275 PF00501 AMP-binding enzyme M1S55_05275 PF13193 AMP-binding enzyme C-terminal domain M1S55_05280 PF00857 Isochorismatase family M1S55_05280 PF00550 Phosphopantetheine attachment site M1S55_05285 PF00282 Pyridoxal-dependent decarboxylase conserved domain M1S55_05295 PF00005 ABC transporter M1S55_05300 PF00005 ABC transporter M1S55_05305 PF00975 Thioesterase domain M1S55_05315 PF00425 chorismate binding enzyme M1S55_05325 PF01208 Uroporphyrinogen decarboxylase (URO-D) M1S55_05330 PF05675 Protein of unknown function (DUF817) M1S55_05345 PF00144 Beta-lactamase M1S55_05355 PF01227 GTP cyclohydrolase I M1S55_05360 PF00111 2Fe-2S iron-sulfur cluster binding domain M1S55_05360 PF01799 [2Fe-2S] binding domain M1S55_05365 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain M1S55_05365 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase M1S55_05380 PF00218 Indole-3-glycerol phosphate synthase M1S55_05385 PF02885 Glycosyl transferase family, helical bundle domain M1S55_05385 PF00591 Glycosyl transferase family, a/b domain M1S55_05390 PF07715 TonB-dependent Receptor Plug Domain M1S55_05390 PF00593 TonB dependent receptor M1S55_05395 PF11838 ERAP1-like C-terminal domain M1S55_05395 PF01433 Peptidase family M1 domain M1S55_05400 PF00117 Glutamine amidotransferase class-I M1S55_05410 PF00854 POT family M1S55_05415 PF00120 Glutamine synthetase, catalytic domain M1S55_05415 PF03951 Glutamine synthetase, beta-Grasp domain M1S55_05420 PF04345 Chorismate lyase M1S55_05425 PF01040 UbiA prenyltransferase family M1S55_05460 PF02777 Iron/manganese superoxide dismutases, C-terminal domain M1S55_05460 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain M1S55_05465 PF01784 NIF3 (NGG1p interacting factor 3) M1S55_05470 PF13180 PDZ domain M1S55_05475 PF12627 Probable RNA and SrmB- binding site of polymerase A M1S55_05475 PF01743 Poly A polymerase head domain M1S55_05480 PF03949 Malic enzyme, NAD binding domain M1S55_05480 PF01515 Phosphate acetyl/butaryl transferase M1S55_05480 PF00390 Malic enzyme, N-terminal domain M1S55_05485 PF00563 EAL domain M1S55_05485 PF00990 Diguanylate cyclase, GGDEF domain M1S55_05485 PF03707 Bacterial signalling protein N terminal repeat M1S55_05490 PF04452 RNA methyltransferase M1S55_05495 PF02219 Methylenetetrahydrofolate reductase M1S55_05500 PF05221 S-adenosyl-L-homocysteine hydrolase M1S55_05500 PF00670 S-adenosyl-L-homocysteine hydrolase, NAD binding domain M1S55_05515 PF02771 Acyl-CoA dehydrogenase, N-terminal domain M1S55_05515 PF00441 Acyl-CoA dehydrogenase, C-terminal domain M1S55_05515 PF09317 Domain of unknown function (DUF1974) M1S55_05520 PF04055 Radical SAM superfamily M1S55_05525 PF07992 Pyridine nucleotide-disulphide oxidoreductase M1S55_05525 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain M1S55_05535 PF07690 Major Facilitator Superfamily M1S55_05545 PF00557 Metallopeptidase family M24 M1S55_05550 PF00318 Ribosomal protein S2 M1S55_05555 PF00889 Elongation factor TS M1S55_05565 PF12833 Helix-turn-helix domain M1S55_05585 PF03330 Lytic transglycolase M1S55_05585 PF05036 Sporulation related domain M1S55_05590 PF13406 Transglycosylase SLT domain M1S55_05595 PF01098 Cell cycle protein M1S55_05605 PF14489 QueF-like protein M1S55_05605 PF14819 Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term M1S55_05610 PF01061 ABC-2 type transporter M1S55_05615 PF00005 ABC transporter M1S55_05645 PF00464 Serine hydroxymethyltransferase M1S55_05650 PF02321 Outer membrane efflux protein M1S55_05655 PF00873 AcrB/AcrD/AcrF family M1S55_05660 PF13533 Biotin-lipoyl like M1S55_05665 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M1S55_05665 PF03466 LysR substrate binding domain M1S55_05670 PF00497 Bacterial extracellular solute-binding proteins, family 3 M1S55_05675 PF00528 Binding-protein-dependent transport system inner membrane component M1S55_05680 PF00528 Binding-protein-dependent transport system inner membrane component M1S55_05685 PF00005 ABC transporter M1S55_05690 PF00893 Small Multidrug Resistance protein M1S55_05695 PF00037 4Fe-4S binding domain M1S55_05700 PF16325 Peptidase family U32 C-terminal domain M1S55_05700 PF01136 Peptidase family U32 M1S55_05705 PF00392 Bacterial regulatory proteins, gntR family M1S55_05705 PF00155 Aminotransferase class I and II M1S55_05710 PF02567 Phenazine biosynthesis-like protein M1S55_05715 PF00970 Oxidoreductase FAD-binding domain M1S55_05715 PF00175 Oxidoreductase NAD-binding domain M1S55_05720 PF18389 TrmO C-terminal domain M1S55_05720 PF01980 tRNA-methyltransferase O M1S55_05730 PF00437 Type II/IV secretion system protein M1S55_05730 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain M1S55_05740 PF00486 Transcriptional regulatory protein, C terminal M1S55_05740 PF00072 Response regulator receiver domain M1S55_05755 PF00293 NUDIX domain M1S55_05765 PF00905 Penicillin binding protein transpeptidase domain M1S55_05765 PF14814 Bifunctional transglycosylase second domain M1S55_05765 PF00912 Transglycosylase M1S55_05770 PF01513 ATP-NAD kinase M1S55_05775 PF07023 Protein of unknown function (DUF1315) M1S55_05780 PF02885 Glycosyl transferase family, helical bundle domain M1S55_05780 PF00591 Glycosyl transferase family, a/b domain M1S55_05785 PF00375 Sodium:dicarboxylate symporter family M1S55_05790 PF02771 Acyl-CoA dehydrogenase, N-terminal domain M1S55_05790 PF00441 Acyl-CoA dehydrogenase, C-terminal domain M1S55_05790 PF02770 Acyl-CoA dehydrogenase, middle domain M1S55_05795 PF00756 Putative esterase M1S55_05800 PF01817 Chorismate mutase type II M1S55_05800 PF01842 ACT domain M1S55_05800 PF00800 Prephenate dehydratase M1S55_05805 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) M1S55_05815 PF01546 Peptidase family M20/M25/M40 M1S55_05815 PF07687 Peptidase dimerisation domain M1S55_05820 PF12706 Beta-lactamase superfamily domain M1S55_05830 PF03883 Peroxide stress protein YaaA M1S55_05840 PF05690 Thiazole biosynthesis protein ThiG M1S55_05850 PF04241 Protein of unknown function (DUF423) M1S55_05855 PF00140 Sigma-70 factor, region 1.2 M1S55_05855 PF04542 Sigma-70 region 2 M1S55_05855 PF04545 Sigma-70, region 4 M1S55_05870 PF00313 'Cold-shock' DNA-binding domain M1S55_05875 PF00270 DEAD/DEAH box helicase M1S55_05875 PF00271 Helicase conserved C-terminal domain M1S55_05885 PF00881 Nitroreductase family M1S55_05890 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus M1S55_05890 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus M1S55_05900 PF00589 Phage integrase family M1S55_06110 PF01180 Dihydroorotate dehydrogenase M1S55_06115 PF02674 Colicin V production protein M1S55_06120 PF00156 Phosphoribosyl transferase domain M1S55_06135 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain M1S55_06135 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain M1S55_06140 PF01435 Peptidase family M48 M1S55_06145 PF09424 Yqey-like protein M1S55_06150 PF01165 Ribosomal protein S21 M1S55_06155 PF00814 Glycoprotease family M1S55_06175 PF00069 Protein kinase domain M1S55_06200 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M1S55_06200 PF03466 LysR substrate binding domain M1S55_06205 PF00202 Aminotransferase class-III M1S55_06210 PF00171 Aldehyde dehydrogenase family M1S55_06215 PF00324 Amino acid permease M1S55_06245 PF04076 Bacterial OB fold (BOF) protein M1S55_06270 PF00561 alpha/beta hydrolase fold M1S55_06275 PF03616 Sodium/glutamate symporter M1S55_06285 PF00392 Bacterial regulatory proteins, gntR family M1S55_06285 PF07729 FCD domain M1S55_06335 PF08946 Osmosensory transporter coiled coil M1S55_06335 PF00083 Sugar (and other) transporter M1S55_06360 PF00155 Aminotransferase class I and II M1S55_06365 PF06826 Predicted Permease Membrane Region M1S55_06365 PF02080 TrkA-C domain M1S55_06375 PF04403 Paraquat-inducible protein A M1S55_06380 PF02470 MlaD protein M1S55_06390 PF01177 Asp/Glu/Hydantoin racemase M1S55_06395 PF00892 EamA-like transporter family M1S55_06400 PF07995 Glucose / Sorbosone dehydrogenase M1S55_06410 PF13610 DDE domain M1S55_06425 PF13610 DDE domain M1S55_06440 PF00132 Bacterial transferase hexapeptide (six repeats) M1S55_06450 PF00893 Small Multidrug Resistance protein M1S55_06455 PF00809 Pterin binding enzyme M1S55_06470 PF07091 Ribosomal RNA methyltransferase (FmrO) M1S55_06485 PF00005 ABC transporter M1S55_06485 PF12848 ABC transporter M1S55_06490 PF01636 Phosphotransferase enzyme family M1S55_06500 PF13817 IS66 C-terminal element M1S55_06500 PF03050 Transposase IS66 family M1S55_06500 PF13007 Transposase C of IS166 homeodomain M1S55_06500 PF13005 zinc-finger binding domain of transposase IS66 M1S55_06525 PF13610 DDE domain M1S55_06540 PF00375 Sodium:dicarboxylate symporter family M1S55_06550 PF00753 Metallo-beta-lactamase superfamily M1S55_06550 PF16123 Hydroxyacylglutathione hydrolase C-terminus M1S55_06555 PF00528 Binding-protein-dependent transport system inner membrane component M1S55_06560 PF00005 ABC transporter M1S55_06560 PF09383 NIL domain M1S55_06570 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain M1S55_06570 PF02843 Phosphoribosylglycinamide synthetase, C domain M1S55_06570 PF02844 Phosphoribosylglycinamide synthetase, N domain M1S55_06575 PF01808 AICARFT/IMPCHase bienzyme M1S55_06575 PF02142 MGS-like domain M1S55_06580 PF02954 Bacterial regulatory protein, Fis family M1S55_06600 PF01134 Glucose inhibited division protein A M1S55_06600 PF13932 GidA associated domain M1S55_06610 PF14403 Circularly permuted ATP-grasp type 2 M1S55_06620 PF01841 Transglutaminase-like superfamily M1S55_06620 PF08379 Bacterial transglutaminase-like N-terminal region M1S55_06630 PF01168 Alanine racemase, N-terminal domain M1S55_06630 PF00842 Alanine racemase, C-terminal domain M1S55_06635 PF00772 DnaB-like helicase N terminal domain M1S55_06635 PF03796 DnaB-like helicase C terminal domain M1S55_06640 PF03948 Ribosomal protein L9, C-terminal domain M1S55_06640 PF01281 Ribosomal protein L9, N-terminal domain M1S55_06645 PF01084 Ribosomal protein S18 M1S55_06650 PF01250 Ribosomal protein S6 M1S55_06655 PF01040 UbiA prenyltransferase family M1S55_06660 PF03626 Prokaryotic Cytochrome C oxidase subunit IV M1S55_06665 PF00510 Cytochrome c oxidase subunit III M1S55_06670 PF00115 Cytochrome C and Quinol oxidase polypeptide I M1S55_06675 PF00116 Cytochrome C oxidase subunit II, periplasmic domain M1S55_06675 PF06481 COX Aromatic Rich Motif M1S55_06685 PF00391 PEP-utilising enzyme, mobile domain M1S55_06685 PF02896 PEP-utilising enzyme, TIM barrel domain M1S55_06685 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain M1S55_06690 PF03618 Kinase/pyrophosphorylase M1S55_06700 PF14883 Hypothetical glycosyl hydrolase family 13 M1S55_06700 PF01522 Polysaccharide deacetylase M1S55_06710 PF13994 PgaD-like protein M1S55_06720 PF00296 Luciferase-like monooxygenase M1S55_06735 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M1S55_06735 PF03466 LysR substrate binding domain M1S55_06745 PF03462 PCRF domain M1S55_06745 PF00472 RF-1 domain M1S55_06750 PF17827 PrmC N-terminal domain M1S55_06750 PF13847 Methyltransferase domain M1S55_06755 PF00528 Binding-protein-dependent transport system inner membrane component M1S55_06760 PF09084 NMT1/THI5 like M1S55_06765 PF12833 Helix-turn-helix domain M1S55_06770 PF00106 short chain dehydrogenase M1S55_06775 PF02770 Acyl-CoA dehydrogenase, middle domain M1S55_06775 PF00441 Acyl-CoA dehydrogenase, C-terminal domain M1S55_06775 PF02771 Acyl-CoA dehydrogenase, N-terminal domain M1S55_06780 PF13193 AMP-binding enzyme C-terminal domain M1S55_06780 PF00501 AMP-binding enzyme M1S55_06785 PF01613 Flavin reductase like domain M1S55_06790 PF00899 ThiF family M1S55_06795 PF03109 ABC1 family M1S55_06810 PF03814 Potassium-transporting ATPase A subunit M1S55_06820 PF02669 K+-transporting ATPase, c chain M1S55_06825 PF02702 Osmosensitive K+ channel His kinase sensor domain M1S55_06825 PF00512 His Kinase A (phospho-acceptor) domain M1S55_06825 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M1S55_06825 PF13493 Domain of unknown function (DUF4118) M1S55_06830 PF00072 Response regulator receiver domain M1S55_06830 PF00486 Transcriptional regulatory protein, C terminal M1S55_06835 PF00120 Glutamine synthetase, catalytic domain M1S55_06845 PF03232 Ubiquinone biosynthesis protein COQ7 M1S55_06850 PF07690 Major Facilitator Superfamily M1S55_06855 PF17243 POTRA domain TamA domain 1 M1S55_06855 PF07244 Surface antigen variable number repeat M1S55_06855 PF01103 Surface antigen M1S55_06870 PF11791 Aconitate B N-terminal domain M1S55_06870 PF06434 Aconitate hydratase 2 N-terminus M1S55_06870 PF00330 Aconitase family (aconitate hydratase) M1S55_06880 PF00520 Ion transport protein M1S55_06880 PF00027 Cyclic nucleotide-binding domain M1S55_06885 PF07690 Major Facilitator Superfamily M1S55_06900 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M1S55_06900 PF03466 LysR substrate binding domain M1S55_06905 PF04284 Protein of unknown function (DUF441) M1S55_06915 PF00849 RNA pseudouridylate synthase M1S55_06915 PF01479 S4 domain M1S55_06930 PF00849 RNA pseudouridylate synthase M1S55_06930 PF01479 S4 domain M1S55_06935 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE M1S55_06940 PF01119 DNA mismatch repair protein, C-terminal domain M1S55_06940 PF08676 MutL C terminal dimerisation domain M1S55_06950 PF17209 Hfq protein M1S55_06960 PF00881 Nitroreductase family M1S55_06970 PF00149 Calcineurin-like phosphoesterase M1S55_06975 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD M1S55_06980 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain M1S55_06980 PF00749 tRNA synthetases class I (E and Q), catalytic domain M1S55_06985 PF00958 GMP synthase C terminal domain M1S55_06985 PF00117 Glutamine amidotransferase class-I M1S55_06985 PF02540 NAD synthase M1S55_06990 PF05985 Ethanolamine ammonia-lyase light chain (EutC) M1S55_06995 PF06751 Ethanolamine ammonia lyase large subunit (EutB) M1S55_07000 PF13520 Amino acid permease M1S55_07005 PF00171 Aldehyde dehydrogenase family M1S55_07020 PF00465 Iron-containing alcohol dehydrogenase M1S55_07025 PF14493 Helix-turn-helix domain M1S55_07025 PF05970 PIF1-like helicase M1S55_07035 PF06445 GyrI-like small molecule binding domain M1S55_07040 PF02110 Hydroxyethylthiazole kinase family M1S55_07055 PF01433 Peptidase family M1 domain M1S55_07055 PF17432 Domain of unknown function (DUF3458_C) ARM repeats M1S55_07055 PF11940 Domain of unknown function (DUF3458) Ig-like fold M1S55_07065 PF00106 short chain dehydrogenase M1S55_07075 PF01817 Chorismate mutase type II M1S55_07080 PF01037 Lrp/AsnC ligand binding domain M1S55_07095 PF00440 Bacterial regulatory proteins, tetR family M1S55_07100 PF07715 TonB-dependent Receptor Plug Domain M1S55_07100 PF00593 TonB dependent receptor M1S55_07105 PF00924 Mechanosensitive ion channel M1S55_07140 PF07715 TonB-dependent Receptor Plug Domain M1S55_07140 PF00593 TonB dependent receptor M1S55_07160 PF00005 ABC transporter M1S55_07160 PF12848 ABC transporter M1S55_07165 PF00582 Universal stress protein family M1S55_07190 PF00689 Cation transporting ATPase, C-terminus M1S55_07190 PF00690 Cation transporter/ATPase, N-terminus M1S55_07195 PF02308 MgtC family M1S55_07200 PF03594 Benzoate membrane transport protein M1S55_07205 PF01037 Lrp/AsnC ligand binding domain M1S55_07210 PF01810 LysE type translocator M1S55_07215 PF00923 Transaldolase/Fructose-6-phosphate aldolase M1S55_07220 PF03466 LysR substrate binding domain M1S55_07220 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M1S55_07230 PF00108 Thiolase, N-terminal domain M1S55_07230 PF02803 Thiolase, C-terminal domain M1S55_07240 PF01575 MaoC like domain M1S55_07245 PF00144 Beta-lactamase M1S55_07255 PF07690 Major Facilitator Superfamily M1S55_07260 PF12169 DNA polymerase III subunits gamma and tau domain III M1S55_07260 PF12168 DNA polymerase III subunits tau domain IV DnaB-binding M1S55_07260 PF12170 DNA polymerase III tau subunit V interacting with alpha M1S55_07265 PF05506 Domain of unknown function (DUF756) M1S55_07265 PF04185 Phosphoesterase family M1S55_07270 PF03061 Thioesterase superfamily M1S55_07275 PF00465 Iron-containing alcohol dehydrogenase M1S55_07285 PF01451 Low molecular weight phosphotyrosine protein phosphatase M1S55_07290 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain M1S55_07290 PF01565 FAD binding domain M1S55_07305 PF01645 Conserved region in glutamate synthase M1S55_07410 PF01555 DNA methylase M1S55_07580 PF08525 Opacity-associated protein A N-terminal motif M1S55_07580 PF01476 LysM domain M1S55_07580 PF01551 Peptidase family M23 M1S55_07670 PF12832 MFS_1 like family M1S55_07680 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain M1S55_07680 PF00289 Biotin carboxylase, N-terminal domain M1S55_07680 PF02785 Biotin carboxylase C-terminal domain M1S55_07685 PF00364 Biotin-requiring enzyme M1S55_07690 PF01220 Dehydroquinase class II M1S55_07695 PF11799 impB/mucB/samB family C-terminal domain M1S55_07695 PF00817 impB/mucB/samB family M1S55_07695 PF13438 Domain of unknown function (DUF4113) M1S55_07705 PF00005 ABC transporter M1S55_07710 PF00072 Response regulator receiver domain M1S55_07710 PF00486 Transcriptional regulatory protein, C terminal M1S55_07720 PF04324 BFD-like [2Fe-2S] binding domain M1S55_07720 PF01077 Nitrite and sulphite reductase 4Fe-4S domain M1S55_07720 PF18267 Rubredoxin NAD+ reductase C-terminal domain M1S55_07720 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain M1S55_07720 PF13806 Rieske-like [2Fe-2S] domain M1S55_07720 PF07992 Pyridine nucleotide-disulphide oxidoreductase M1S55_07725 PF01077 Nitrite and sulphite reductase 4Fe-4S domain M1S55_07725 PF18267 Rubredoxin NAD+ reductase C-terminal domain M1S55_07725 PF07992 Pyridine nucleotide-disulphide oxidoreductase M1S55_07725 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain M1S55_07725 PF04324 BFD-like [2Fe-2S] binding domain M1S55_07730 PF04879 Molybdopterin oxidoreductase Fe4S4 domain M1S55_07730 PF00384 Molybdopterin oxidoreductase M1S55_07730 PF04324 BFD-like [2Fe-2S] binding domain M1S55_07730 PF01568 Molydopterin dinucleotide binding domain M1S55_07735 PF12804 MobA-like NTP transferase domain M1S55_07740 PF04879 Molybdopterin oxidoreductase Fe4S4 domain M1S55_07740 PF00384 Molybdopterin oxidoreductase M1S55_07740 PF01568 Molydopterin dinucleotide binding domain M1S55_07745 PF06463 Molybdenum Cofactor Synthesis C M1S55_07745 PF04055 Radical SAM superfamily M1S55_07755 PF02391 MoaE protein M1S55_07770 PF01638 HxlR-like helix-turn-helix M1S55_07775 PF00155 Aminotransferase class I and II M1S55_07775 PF00392 Bacterial regulatory proteins, gntR family M1S55_07780 PF00892 EamA-like transporter family M1S55_07800 PF02635 DsrE/DsrF-like family M1S55_07805 PF16363 GDP-mannose 4,6 dehydratase M1S55_07810 PF00206 Lyase M1S55_07810 PF10415 Fumarase C C-terminus M1S55_07830 PF01266 FAD dependent oxidoreductase M1S55_07840 PF02542 YgbB family M1S55_07850 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain M1S55_07850 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain M1S55_07870 PF00072 Response regulator receiver domain M1S55_07870 PF02954 Bacterial regulatory protein, Fis family M1S55_07870 PF00158 Sigma-54 interaction domain M1S55_07875 PF00989 PAS fold M1S55_07875 PF00512 His Kinase A (phospho-acceptor) domain M1S55_07875 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M1S55_07880 PF18693 TRAM domain M1S55_07880 PF00919 Uncharacterized protein family UPF0004 M1S55_07880 PF04055 Radical SAM superfamily M1S55_07885 PF00696 Amino acid kinase family M1S55_07890 PF01765 Ribosome recycling factor M1S55_07895 PF01255 Putative undecaprenyl diphosphate synthase M1S55_07905 PF13288 DXP reductoisomerase C-terminal domain M1S55_07905 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain M1S55_07905 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase M1S55_07910 PF13180 PDZ domain M1S55_07910 PF17820 PDZ domain M1S55_07910 PF02163 Peptidase family M50 M1S55_07915 PF01103 Surface antigen M1S55_07915 PF07244 Surface antigen variable number repeat M1S55_07925 PF00132 Bacterial transferase hexapeptide (six repeats) M1S55_07925 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD M1S55_07930 PF07977 FabA-like domain M1S55_07935 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 M1S55_07935 PF00132 Bacterial transferase hexapeptide (six repeats) M1S55_07950 PF02631 RecX family M1S55_07955 PF00154 recA bacterial DNA recombination protein M1S55_07960 PF01479 S4 domain M1S55_07965 PF13419 Haloacid dehalogenase-like hydrolase M1S55_07990 PF01037 Lrp/AsnC ligand binding domain M1S55_07995 PF00266 Aminotransferase class-V M1S55_08000 PF00324 Amino acid permease M1S55_08015 PF05922 Peptidase inhibitor I9 M1S55_08015 PF00082 Subtilase family M1S55_08020 PF01740 STAS domain M1S55_08020 PF00916 Sulfate permease family M1S55_08025 PF02586 SOS response associated peptidase (SRAP) M1S55_08030 PF07995 Glucose / Sorbosone dehydrogenase M1S55_08040 PF00990 Diguanylate cyclase, GGDEF domain M1S55_08040 PF03707 Bacterial signalling protein N terminal repeat M1S55_08040 PF00563 EAL domain M1S55_08060 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit M1S55_08060 PF02378 Phosphotransferase system, EIIC M1S55_08065 PF00294 pfkB family carbohydrate kinase M1S55_08070 PF00391 PEP-utilising enzyme, mobile domain M1S55_08070 PF00381 PTS HPr component phosphorylation site M1S55_08070 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 M1S55_08070 PF05524 PEP-utilising enzyme, N-terminal M1S55_08070 PF02896 PEP-utilising enzyme, TIM barrel domain M1S55_08095 PF05525 Branched-chain amino acid transport protein M1S55_08100 PF00557 Metallopeptidase family M24 M1S55_08105 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M1S55_08105 PF03466 LysR substrate binding domain M1S55_08115 PF00462 Glutaredoxin M1S55_08120 PF00202 Aminotransferase class-III M1S55_08125 PF00478 IMP dehydrogenase / GMP reductase domain M1S55_08125 PF00571 CBS domain M1S55_08150 PF00448 SRP54-type protein, GTPase domain M1S55_08150 PF02881 SRP54-type protein, helical bundle domain M1S55_08160 PF09829 Uncharacterized protein conserved in bacteria (DUF2057) M1S55_08175 PF08173 Membrane bound YbgT-like protein M1S55_08180 PF02322 Cytochrome bd terminal oxidase subunit II M1S55_08185 PF01654 Cytochrome bd terminal oxidase subunit I M1S55_08195 PF07290 Protein of unknown function (DUF1449) M1S55_08205 PF00294 pfkB family carbohydrate kinase M1S55_08210 PF00593 TonB dependent receptor M1S55_08210 PF07715 TonB-dependent Receptor Plug Domain M1S55_08215 PF08367 Peptidase M16C associated M1S55_08215 PF00675 Insulinase (Peptidase family M16) M1S55_08215 PF05193 Peptidase M16 inactive domain M1S55_08220 PF02253 Phospholipase A1 M1S55_08225 PF02386 Cation transport protein M1S55_08230 PF02080 TrkA-C domain M1S55_08230 PF02254 TrkA-N domain M1S55_08235 PF00585 C-terminal regulatory domain of Threonine dehydratase M1S55_08235 PF00291 Pyridoxal-phosphate dependent enzyme M1S55_08240 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) M1S55_08255 PF01118 Semialdehyde dehydrogenase, NAD binding domain M1S55_08255 PF02774 Semialdehyde dehydrogenase, dimerisation domain M1S55_08265 PF02617 ATP-dependent Clp protease adaptor protein ClpS M1S55_08270 PF07724 AAA domain (Cdc48 subfamily) M1S55_08270 PF17871 AAA lid domain M1S55_08270 PF10431 C-terminal, D2-small domain, of ClpB protein M1S55_08270 PF02861 Clp amino terminal domain, pathogenicity island component M1S55_08270 PF00004 ATPase family associated with various cellular activities (AAA) M1S55_08280 PF00793 DAHP synthetase I family M1S55_08295 PF07992 Pyridine nucleotide-disulphide oxidoreductase M1S55_08295 PF00724 NADH:flavin oxidoreductase / NADH oxidase family M1S55_08325 PF06418 CTP synthase N-terminus M1S55_08325 PF00117 Glutamine amidotransferase class-I M1S55_08330 PF00793 DAHP synthetase I family M1S55_08335 PF03952 Enolase, N-terminal domain M1S55_08335 PF00113 Enolase, C-terminal TIM barrel domain M1S55_08340 PF04239 Protein of unknown function (DUF421) M1S55_08345 PF04977 Septum formation initiator M1S55_08350 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase M1S55_08365 PF02803 Thiolase, C-terminal domain M1S55_08365 PF00108 Thiolase, N-terminal domain M1S55_08370 PF00206 Lyase M1S55_08370 PF10397 Adenylosuccinate lyase C-terminus M1S55_08375 PF00561 alpha/beta hydrolase fold M1S55_08380 PF07690 Major Facilitator Superfamily M1S55_08385 PF02627 Carboxymuconolactone decarboxylase family M1S55_08390 PF00775 Dioxygenase M1S55_08390 PF12391 Protocatechuate 3,4-dioxygenase beta subunit N terminal M1S55_08395 PF00775 Dioxygenase M1S55_08400 PF01487 Type I 3-dehydroquinase M1S55_08405 PF05048 Periplasmic copper-binding protein (NosD) M1S55_08410 PF04966 Carbohydrate-selective porin, OprB family M1S55_08415 PF01011 PQQ enzyme repeat M1S55_08415 PF13360 PQQ-like domain M1S55_08425 PF04143 Sulphur transport M1S55_08435 PF00753 Metallo-beta-lactamase superfamily M1S55_08440 PF01614 Bacterial transcriptional regulator M1S55_08440 PF09339 IclR helix-turn-helix domain M1S55_08445 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M1S55_08445 PF03466 LysR substrate binding domain M1S55_08450 PF02771 Acyl-CoA dehydrogenase, N-terminal domain M1S55_08450 PF02770 Acyl-CoA dehydrogenase, middle domain M1S55_08450 PF00441 Acyl-CoA dehydrogenase, C-terminal domain M1S55_08475 PF07690 Major Facilitator Superfamily M1S55_08485 PF01425 Amidase M1S55_08490 PF08028 Acyl-CoA dehydrogenase, C-terminal domain M1S55_08505 PF00848 Ring hydroxylating alpha subunit (catalytic domain) M1S55_08505 PF00355 Rieske [2Fe-2S] domain M1S55_08520 PF00175 Oxidoreductase NAD-binding domain M1S55_08520 PF00111 2Fe-2S iron-sulfur cluster binding domain M1S55_08525 PF01613 Flavin reductase like domain M1S55_08530 PF02311 AraC-like ligand binding domain M1S55_08530 PF12833 Helix-turn-helix domain M1S55_08535 PF01179 Copper amine oxidase, enzyme domain M1S55_08535 PF07833 Copper amine oxidase N-terminal domain M1S55_08535 PF02727 Copper amine oxidase, N2 domain M1S55_08535 PF02728 Copper amine oxidase, N3 domain M1S55_08545 PF00171 Aldehyde dehydrogenase family M1S55_08550 PF01804 Penicillin amidase M1S55_08555 PF12146 Serine aminopeptidase, S33 M1S55_08565 PF01144 Coenzyme A transferase M1S55_08575 PF00775 Dioxygenase M1S55_08575 PF04444 Catechol dioxygenase N terminus M1S55_08580 PF02426 Muconolactone delta-isomerase M1S55_08585 PF13378 Enolase C-terminal domain-like M1S55_08585 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain M1S55_08590 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M1S55_08590 PF03466 LysR substrate binding domain M1S55_08600 PF07729 FCD domain M1S55_08600 PF00392 Bacterial regulatory proteins, gntR family M1S55_08605 PF00920 Dehydratase family M1S55_08610 PF07690 Major Facilitator Superfamily M1S55_08640 PF02771 Acyl-CoA dehydrogenase, N-terminal domain M1S55_08640 PF02770 Acyl-CoA dehydrogenase, middle domain M1S55_08640 PF00441 Acyl-CoA dehydrogenase, C-terminal domain M1S55_08650 PF06506 Propionate catabolism activator M1S55_08650 PF02954 Bacterial regulatory protein, Fis family M1S55_08650 PF00158 Sigma-54 interaction domain M1S55_08655 PF13193 AMP-binding enzyme C-terminal domain M1S55_08655 PF00501 AMP-binding enzyme M1S55_08660 PF04341 Protein of unknown function, DUF485 M1S55_08665 PF00474 Sodium:solute symporter family M1S55_08670 PF08240 Alcohol dehydrogenase GroES-like domain M1S55_08670 PF00107 Zinc-binding dehydrogenase M1S55_08675 PF00171 Aldehyde dehydrogenase family M1S55_08685 PF00561 alpha/beta hydrolase fold M1S55_08690 PF00199 Catalase M1S55_08690 PF06628 Catalase-related immune-responsive M1S55_08705 PF07859 alpha/beta hydrolase fold M1S55_08710 PF01047 MarR family M1S55_08715 PF00724 NADH:flavin oxidoreductase / NADH oxidase family M1S55_08715 PF07992 Pyridine nucleotide-disulphide oxidoreductase M1S55_08720 PF00106 short chain dehydrogenase M1S55_08725 PF01872 RibD C-terminal domain M1S55_08730 PF00376 MerR family regulatory protein M1S55_08730 PF09278 MerR, DNA binding M1S55_08740 PF07992 Pyridine nucleotide-disulphide oxidoreductase M1S55_08750 PF12706 Beta-lactamase superfamily domain M1S55_08755 PF08359 YsiA-like protein, C-terminal region M1S55_08755 PF00440 Bacterial regulatory proteins, tetR family M1S55_08765 PF00857 Isochorismatase family M1S55_08775 PF07995 Glucose / Sorbosone dehydrogenase M1S55_08790 PF01546 Peptidase family M20/M25/M40 M1S55_08790 PF07687 Peptidase dimerisation domain M1S55_08800 PF08479 POTRA domain, ShlB-type M1S55_08800 PF17287 POTRA domain M1S55_08800 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB M1S55_08820 PF07690 Major Facilitator Superfamily M1S55_08825 PF04909 Amidohydrolase M1S55_08835 PF00392 Bacterial regulatory proteins, gntR family M1S55_08835 PF07702 UTRA domain M1S55_08840 PF08450 SMP-30/Gluconolactonase/LRE-like region M1S55_08890 PF03737 Aldolase/RraA M1S55_08920 PF00529 HlyD membrane-fusion protein of T1SS M1S55_08920 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion M1S55_08935 PF00171 Aldehyde dehydrogenase family M1S55_08940 PF00171 Aldehyde dehydrogenase family M1S55_08945 PF00920 Dehydratase family M1S55_08955 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M1S55_08955 PF03466 LysR substrate binding domain M1S55_08960 PF01370 NAD dependent epimerase/dehydratase family M1S55_08965 PF07690 Major Facilitator Superfamily M1S55_08970 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase M1S55_08970 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase M1S55_08975 PF06719 AraC-type transcriptional regulator N-terminus M1S55_08975 PF12833 Helix-turn-helix domain M1S55_08990 PF08240 Alcohol dehydrogenase GroES-like domain M1S55_08990 PF00107 Zinc-binding dehydrogenase M1S55_09000 PF01032 FecCD transport family M1S55_09005 PF00005 ABC transporter M1S55_09025 PF14572 Phosphoribosyl synthetase-associated domain M1S55_09025 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase M1S55_09030 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family M1S55_09105 PF00196 Bacterial regulatory proteins, luxR family M1S55_09110 PF01425 Amidase M1S55_09115 PF13533 Biotin-lipoyl like M1S55_09120 PF07690 Major Facilitator Superfamily M1S55_09145 PF01975 Survival protein SurE M1S55_09155 PF13291 ACT domain M1S55_09155 PF04607 Region found in RelA / SpoT proteins M1S55_09155 PF02824 TGS domain M1S55_09205 PF12146 Serine aminopeptidase, S33 M1S55_09210 PF02311 AraC-like ligand binding domain M1S55_09210 PF12833 Helix-turn-helix domain M1S55_09250 PF00529 HlyD membrane-fusion protein of T1SS M1S55_09250 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion M1S55_09255 PF00873 AcrB/AcrD/AcrF family M1S55_09260 PF02321 Outer membrane efflux protein M1S55_09265 PF12146 Serine aminopeptidase, S33 M1S55_09270 PF00743 Flavin-binding monooxygenase-like M1S55_09275 PF01593 Flavin containing amine oxidoreductase M1S55_09290 PF01266 FAD dependent oxidoreductase M1S55_09310 PF16970 Type-1 fimbrial protein, A M1S55_09320 PF02753 Pili assembly chaperone PapD, C-terminal domain M1S55_09320 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain M1S55_09325 PF13954 PapC N-terminal domain M1S55_09325 PF00577 Outer membrane usher protein M1S55_09325 PF13953 PapC C-terminal domain M1S55_09330 PF00419 Fimbrial protein M1S55_09340 PF00107 Zinc-binding dehydrogenase M1S55_09340 PF08240 Alcohol dehydrogenase GroES-like domain M1S55_09350 PF00199 Catalase M1S55_09365 PF13091 PLD-like domain M1S55_09380 PF01244 Membrane dipeptidase (Peptidase family M19) M1S55_09385 PF04055 Radical SAM superfamily M1S55_09385 PF13186 Iron-sulfur cluster-binding domain M1S55_09390 PF05402 Coenzyme PQQ synthesis protein D (PqqD) M1S55_09395 PF03070 TENA/THI-4/PQQC family M1S55_09400 PF12706 Beta-lactamase superfamily domain M1S55_09405 PF08042 PqqA family M1S55_09410 PF13090 Polyphosphate kinase C-terminal domain 2 M1S55_09410 PF17941 Polyphosphate kinase C-terminal domain 1 M1S55_09410 PF13089 Polyphosphate kinase N-terminal domain M1S55_09410 PF02503 Polyphosphate kinase middle domain M1S55_09415 PF00149 Calcineurin-like phosphoesterase M1S55_09425 PF00857 Isochorismatase family M1S55_09425 PF00550 Phosphopantetheine attachment site M1S55_09430 PF00106 short chain dehydrogenase M1S55_09435 PF03459 TOBE domain M1S55_09435 PF00005 ABC transporter M1S55_09440 PF00528 Binding-protein-dependent transport system inner membrane component M1S55_09450 PF03459 TOBE domain M1S55_09450 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M1S55_09455 PF00848 Ring hydroxylating alpha subunit (catalytic domain) M1S55_09455 PF00355 Rieske [2Fe-2S] domain M1S55_09460 PF00866 Ring hydroxylating beta subunit M1S55_09465 PF00111 2Fe-2S iron-sulfur cluster binding domain M1S55_09465 PF00175 Oxidoreductase NAD-binding domain M1S55_09465 PF00970 Oxidoreductase FAD-binding domain M1S55_09470 PF14525 AraC-binding-like domain M1S55_09470 PF12833 Helix-turn-helix domain M1S55_09480 PF01613 Flavin reductase like domain M1S55_09495 PF01738 Dienelactone hydrolase family M1S55_09500 PF07690 Major Facilitator Superfamily M1S55_09505 PF06719 AraC-type transcriptional regulator N-terminus M1S55_09505 PF12833 Helix-turn-helix domain M1S55_09535 PF03466 LysR substrate binding domain M1S55_09535 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M1S55_09540 PF01144 Coenzyme A transferase M1S55_09545 PF01144 Coenzyme A transferase M1S55_09550 PF02667 Short chain fatty acid transporter M1S55_09555 PF00108 Thiolase, N-terminal domain M1S55_09555 PF02803 Thiolase, C-terminal domain M1S55_09560 PF03466 LysR substrate binding domain M1S55_09560 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M1S55_09565 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M1S55_09565 PF03466 LysR substrate binding domain M1S55_09580 PF10415 Fumarase C C-terminus M1S55_09580 PF00206 Lyase M1S55_09585 PF07715 TonB-dependent Receptor Plug Domain M1S55_09585 PF00593 TonB dependent receptor M1S55_09590 PF00083 Sugar (and other) transporter M1S55_09605 PF00005 ABC transporter M1S55_09610 PF00528 Binding-protein-dependent transport system inner membrane component M1S55_09630 PF07702 UTRA domain M1S55_09630 PF00392 Bacterial regulatory proteins, gntR family M1S55_09640 PF02525 Flavodoxin-like fold M1S55_09645 PF01638 HxlR-like helix-turn-helix M1S55_09650 PF12833 Helix-turn-helix domain M1S55_09650 PF06445 GyrI-like small molecule binding domain M1S55_09665 PF01925 Sulfite exporter TauE/SafE M1S55_09685 PF00158 Sigma-54 interaction domain M1S55_09685 PF00072 Response regulator receiver domain M1S55_09685 PF02954 Bacterial regulatory protein, Fis family M1S55_09690 PF01062 Bestrophin, RFP-TM, chloride channel M1S55_09695 PF08240 Alcohol dehydrogenase GroES-like domain M1S55_09695 PF00107 Zinc-binding dehydrogenase M1S55_09700 PF00106 short chain dehydrogenase M1S55_09705 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain M1S55_09705 PF07992 Pyridine nucleotide-disulphide oxidoreductase M1S55_09710 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) M1S55_09710 PF02817 e3 binding domain M1S55_09710 PF00364 Biotin-requiring enzyme M1S55_09715 PF02779 Transketolase, pyrimidine binding domain M1S55_09715 PF02780 Transketolase, C-terminal domain M1S55_09720 PF00676 Dehydrogenase E1 component M1S55_09725 PF04055 Radical SAM superfamily M1S55_09740 PF00990 Diguanylate cyclase, GGDEF domain M1S55_09740 PF08448 PAS fold M1S55_09745 PF01264 Chorismate synthase M1S55_09750 PF05175 Methyltransferase small domain M1S55_09755 PF00291 Pyridoxal-phosphate dependent enzyme M1S55_09765 PF00004 ATPase family associated with various cellular activities (AAA) M1S55_09765 PF17862 AAA+ lid domain M1S55_09765 PF01434 Peptidase family M41 M1S55_09775 PF05166 YcgL domain M1S55_09795 PF00570 HRDC domain M1S55_09795 PF01612 3'-5' exonuclease M1S55_09800 PF13662 Toprim domain M1S55_09800 PF02132 RecR protein M1S55_09805 PF02575 YbaB/EbfC DNA-binding family M1S55_09815 PF01053 Cys/Met metabolism PLP-dependent enzyme M1S55_09820 PF00561 alpha/beta hydrolase fold M1S55_09825 PF08241 Methyltransferase domain M1S55_09855 PF01230 HIT domain M1S55_09890 PF00005 ABC transporter M1S55_09895 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion M1S55_09905 PF02684 Lipid-A-disaccharide synthetase M1S55_09910 PF00593 TonB dependent receptor M1S55_09910 PF07715 TonB-dependent Receptor Plug Domain M1S55_09930 PF01925 Sulfite exporter TauE/SafE M1S55_09935 PF00793 DAHP synthetase I family M1S55_09940 PF02654 Cobalamin-5-phosphate synthase M1S55_09955 PF02277 Phosphoribosyltransferase M1S55_09960 PF02283 Cobinamide kinase / cobinamide phosphate guanyltransferase M1S55_09970 PF13419 Haloacid dehalogenase-like hydrolase M1S55_09995 PF00593 TonB dependent receptor M1S55_09995 PF07715 TonB-dependent Receptor Plug Domain M1S55_10010 PF06276 Ferric iron reductase FhuF-like transporter M1S55_10010 PF04183 IucA / IucC family M1S55_10015 PF06276 Ferric iron reductase FhuF-like transporter M1S55_10015 PF04183 IucA / IucC family M1S55_10020 PF07690 Major Facilitator Superfamily M1S55_10025 PF13434 L-lysine 6-monooxygenase (NADPH-requiring) M1S55_10030 PF06276 Ferric iron reductase FhuF-like transporter M1S55_10030 PF04183 IucA / IucC family M1S55_10035 PF04073 Aminoacyl-tRNA editing domain M1S55_10045 PF03109 ABC1 family M1S55_10050 PF02770 Acyl-CoA dehydrogenase, middle domain M1S55_10050 PF02771 Acyl-CoA dehydrogenase, N-terminal domain M1S55_10050 PF00441 Acyl-CoA dehydrogenase, C-terminal domain M1S55_10055 PF00441 Acyl-CoA dehydrogenase, C-terminal domain M1S55_10055 PF02770 Acyl-CoA dehydrogenase, middle domain M1S55_10055 PF02771 Acyl-CoA dehydrogenase, N-terminal domain M1S55_10060 PF00487 Fatty acid desaturase M1S55_10065 PF12833 Helix-turn-helix domain M1S55_10065 PF12852 Cupin M1S55_10070 PF00639 PPIC-type PPIASE domain M1S55_10070 PF09312 SurA N-terminal domain M1S55_10075 PF00216 Bacterial DNA-binding protein M1S55_10090 PF02082 Transcriptional regulator M1S55_10095 PF00266 Aminotransferase class-V M1S55_10100 PF01592 NifU-like N terminal domain M1S55_10105 PF01521 Iron-sulphur cluster biosynthesis M1S55_10110 PF07743 HSCB C-terminal oligomerisation domain M1S55_10110 PF00226 DnaJ domain M1S55_10115 PF00012 Hsp70 protein M1S55_10120 PF00111 2Fe-2S iron-sulfur cluster binding domain M1S55_10125 PF00211 Adenylate and Guanylate cyclase catalytic domain M1S55_10135 PF02559 CarD-like/TRCF domain M1S55_10135 PF00270 DEAD/DEAH box helicase M1S55_10135 PF00271 Helicase conserved C-terminal domain M1S55_10135 PF17757 UvrB interaction domain M1S55_10135 PF03461 TRCF domain M1S55_10155 PF03737 Aldolase/RraA M1S55_10160 PF13460 NAD(P)H-binding M1S55_10165 PF01649 Ribosomal protein S20 M1S55_10175 PF00459 Inositol monophosphatase family M1S55_10190 PF00005 ABC transporter M1S55_10190 PF08352 Oligopeptide/dipeptide transporter, C-terminal region M1S55_10195 PF00528 Binding-protein-dependent transport system inner membrane component M1S55_10200 PF00528 Binding-protein-dependent transport system inner membrane component M1S55_10205 PF01432 Peptidase family M3 M1S55_10245 PF01618 MotA/TolQ/ExbB proton channel family M1S55_10250 PF02472 Biopolymer transport protein ExbD/TolR M1S55_10255 PF02472 Biopolymer transport protein ExbD/TolR M1S55_10265 PF01274 Malate synthase M1S55_10270 PF03969 AFG1-like ATPase M1S55_10280 PF00743 Flavin-binding monooxygenase-like M1S55_10290 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family M1S55_10300 PF00216 Bacterial DNA-binding protein M1S55_10305 PF00575 S1 RNA binding domain M1S55_10310 PF02224 Cytidylate kinase M1S55_10320 PF14437 MafB19-like deaminase M1S55_10330 PF03167 Uracil DNA glycosylase superfamily M1S55_10340 PF03934 Type II secretion system (T2SS), protein K M1S55_10345 PF07963 Prokaryotic N-terminal methylation motif M1S55_10345 PF11612 Type II secretion system (T2SS), protein J M1S55_10350 PF07963 Prokaryotic N-terminal methylation motif M1S55_10350 PF02501 Type II secretion system (T2SS), protein I M1S55_10365 PF01026 TatD related DNase M1S55_10375 PF09115 DNA polymerase III, delta subunit, C terminal M1S55_10380 PF02348 Cytidylyltransferase M1S55_10385 PF02606 Tetraacyldisaccharide-1-P 4'-kinase M1S55_10390 PF00664 ABC transporter transmembrane region M1S55_10390 PF00005 ABC transporter M1S55_10400 PF01618 MotA/TolQ/ExbB proton channel family M1S55_10405 PF17762 HTH domain found in ParB protein M1S55_10405 PF02195 ParB-like nuclease domain M1S55_10410 PF13614 AAA domain M1S55_10415 PF02527 rRNA small subunit methyltransferase G M1S55_10420 PF00483 Nucleotidyl transferase M1S55_10425 PF01636 Phosphotransferase enzyme family M1S55_10430 PF04453 LPS transport system D M1S55_10430 PF03968 OstA-like protein M1S55_10435 PF00639 PPIC-type PPIASE domain M1S55_10435 PF09312 SurA N-terminal domain M1S55_10440 PF01116 Fructose-bisphosphate aldolase class-II M1S55_10450 PF00162 Phosphoglycerate kinase M1S55_10460 PF02545 Maf-like protein M1S55_10465 PF08007 Cupin superfamily protein M1S55_10480 PF00375 Sodium:dicarboxylate symporter family M1S55_10485 PF06912 Protein of unknown function (DUF1275) M1S55_10490 PF09831 Uncharacterized protein conserved in bacteria (DUF2058) M1S55_10495 PF00664 ABC transporter transmembrane region M1S55_10495 PF00005 ABC transporter M1S55_10505 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term M1S55_10505 PF12833 Helix-turn-helix domain M1S55_10510 PF01597 Glycine cleavage H-protein M1S55_10515 PF02146 Sir2 family M1S55_10520 PF00474 Sodium:solute symporter family M1S55_10525 PF01037 Lrp/AsnC ligand binding domain M1S55_10535 PF04229 GrpB protein M1S55_10540 PF05958 tRNA (Uracil-5-)-methyltransferase M1S55_10550 PF09992 Phosphodiester glycosidase M1S55_10560 PF04264 YceI-like domain M1S55_10570 PF00456 Transketolase, thiamine diphosphate binding domain M1S55_10570 PF02779 Transketolase, pyrimidine binding domain M1S55_10570 PF02780 Transketolase, C-terminal domain M1S55_10575 PF02772 S-adenosylmethionine synthetase, central domain M1S55_10575 PF00438 S-adenosylmethionine synthetase, N-terminal domain M1S55_10575 PF02773 S-adenosylmethionine synthetase, C-terminal domain M1S55_10600 PF00905 Penicillin binding protein transpeptidase domain M1S55_10615 PF02075 Crossover junction endodeoxyribonuclease RuvC M1S55_10620 PF01256 Carbohydrate kinase M1S55_10620 PF03853 YjeF-related protein N-terminus M1S55_10625 PF08331 Domain of unknown function (DUF1730) M1S55_10630 PF06968 Biotin and Thiamin Synthesis associated domain M1S55_10630 PF04055 Radical SAM superfamily M1S55_10645 PF16970 Type-1 fimbrial protein, A M1S55_10650 PF02753 Pili assembly chaperone PapD, C-terminal domain M1S55_10650 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain M1S55_10655 PF13954 PapC N-terminal domain M1S55_10655 PF13953 PapC C-terminal domain M1S55_10655 PF00577 Outer membrane usher protein M1S55_10675 PF00892 EamA-like transporter family M1S55_10685 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin M1S55_10695 PF03466 LysR substrate binding domain M1S55_10695 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M1S55_10715 PF00440 Bacterial regulatory proteins, tetR family M1S55_10725 PF01709 Transcriptional regulator M1S55_10730 PF01037 Lrp/AsnC ligand binding domain M1S55_10740 PF00005 ABC transporter M1S55_10745 PF00528 Binding-protein-dependent transport system inner membrane component M1S55_10750 PF00528 Binding-protein-dependent transport system inner membrane component M1S55_10765 PF08028 Acyl-CoA dehydrogenase, C-terminal domain M1S55_10765 PF02771 Acyl-CoA dehydrogenase, N-terminal domain M1S55_10775 PF00296 Luciferase-like monooxygenase M1S55_10780 PF03180 NLPA lipoprotein M1S55_10785 PF03180 NLPA lipoprotein M1S55_10790 PF09383 NIL domain M1S55_10790 PF00005 ABC transporter M1S55_10795 PF00528 Binding-protein-dependent transport system inner membrane component M1S55_10800 PF01926 50S ribosome-binding GTPase M1S55_10800 PF06071 Protein of unknown function (DUF933) M1S55_10840 PF02222 ATP-grasp domain M1S55_10845 PF01909 Nucleotidyltransferase domain M1S55_10845 PF01966 HD domain M1S55_10845 PF08335 GlnD PII-uridylyltransferase M1S55_10850 PF00155 Aminotransferase class I and II M1S55_10860 PF12852 Cupin M1S55_10860 PF12833 Helix-turn-helix domain M1S55_10865 PF00255 Glutathione peroxidase M1S55_10870 PF01641 SelR domain M1S55_10875 PF00155 Aminotransferase class I and II M1S55_10880 PF00375 Sodium:dicarboxylate symporter family M1S55_10885 PF00710 Asparaginase, N-terminal M1S55_10885 PF17763 Glutaminase/Asparaginase C-terminal domain M1S55_10890 PF07733 Bacterial DNA polymerase III alpha NTPase domain M1S55_10890 PF14579 Helix-hairpin-helix motif M1S55_10890 PF02811 PHP domain M1S55_10890 PF01336 OB-fold nucleic acid binding domain M1S55_10890 PF17657 Bacterial DNA polymerase III alpha subunit finger domain M1S55_10895 PF00588 SpoU rRNA Methylase family M1S55_10900 PF00132 Bacterial transferase hexapeptide (six repeats) M1S55_10940 PF01022 Bacterial regulatory protein, arsR family M1S55_10945 PF03960 ArsC family M1S55_10955 PF13382 Adenine deaminase C-terminal domain M1S55_10955 PF01979 Amidohydrolase family M1S55_10965 PF03466 LysR substrate binding domain M1S55_10965 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M1S55_10975 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin M1S55_10980 PF01177 Asp/Glu/Hydantoin racemase M1S55_10985 PF02668 Taurine catabolism dioxygenase TauD, TfdA family M1S55_10990 PF00528 Binding-protein-dependent transport system inner membrane component M1S55_10995 PF00005 ABC transporter M1S55_11000 PF04069 Substrate binding domain of ABC-type glycine betaine transport system M1S55_11010 PF00083 Sugar (and other) transporter M1S55_11015 PF00296 Luciferase-like monooxygenase M1S55_11020 PF02771 Acyl-CoA dehydrogenase, N-terminal domain M1S55_11020 PF08028 Acyl-CoA dehydrogenase, C-terminal domain M1S55_11020 PF02770 Acyl-CoA dehydrogenase, middle domain M1S55_11030 PF01654 Cytochrome bd terminal oxidase subunit I M1S55_11035 PF02322 Cytochrome bd terminal oxidase subunit II M1S55_11045 PF00392 Bacterial regulatory proteins, gntR family M1S55_11045 PF00155 Aminotransferase class I and II M1S55_11050 PF03466 LysR substrate binding domain M1S55_11050 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M1S55_11065 PF00698 Acyl transferase domain M1S55_11070 PF10620 Phosphoribosyl-dephospho-CoA transferase MdcG M1S55_11080 PF01039 Carboxyl transferase domain M1S55_11085 PF06857 Malonate decarboxylase delta subunit (MdcD) M1S55_11090 PF01874 ATP:dephospho-CoA triphosphoribosyl transferase M1S55_11095 PF16957 Malonate decarboxylase, alpha subunit, transporter M1S55_11100 PF07690 Major Facilitator Superfamily M1S55_11115 PF00155 Aminotransferase class I and II M1S55_11115 PF00392 Bacterial regulatory proteins, gntR family M1S55_11120 PF04172 LrgB-like family M1S55_11125 PF03788 LrgA family M1S55_11130 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M1S55_11130 PF03466 LysR substrate binding domain M1S55_11135 PF02798 Glutathione S-transferase, N-terminal domain M1S55_11135 PF14834 Glutathione S-transferase, C-terminal domain M1S55_11140 PF02798 Glutathione S-transferase, N-terminal domain M1S55_11145 PF03466 LysR substrate binding domain M1S55_11145 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M1S55_11155 PF00581 Rhodanese-like domain M1S55_11160 PF00132 Bacterial transferase hexapeptide (six repeats) M1S55_11170 PF00266 Aminotransferase class-V M1S55_11180 PF01810 LysE type translocator M1S55_11185 PF03466 LysR substrate binding domain M1S55_11185 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M1S55_11195 PF00497 Bacterial extracellular solute-binding proteins, family 3 M1S55_11200 PF00497 Bacterial extracellular solute-binding proteins, family 3 M1S55_11205 PF00005 ABC transporter M1S55_11210 PF00528 Binding-protein-dependent transport system inner membrane component M1S55_11215 PF00528 Binding-protein-dependent transport system inner membrane component M1S55_11230 PF00072 Response regulator receiver domain M1S55_11245 PF13404 AsnC-type helix-turn-helix domain M1S55_11245 PF01037 Lrp/AsnC ligand binding domain M1S55_11255 PF00717 Peptidase S24-like M1S55_11280 PF06628 Catalase-related immune-responsive M1S55_11280 PF18011 C-terminal domain found in long catalases M1S55_11280 PF00199 Catalase M1S55_11290 PF00994 Probable molybdopterin binding domain M1S55_11290 PF18146 Damage-inducible protein CinA KH domain M1S55_11290 PF02464 Competence-damaged protein M1S55_11325 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M1S55_11325 PF03466 LysR substrate binding domain M1S55_11345 PF00501 AMP-binding enzyme M1S55_11345 PF13193 AMP-binding enzyme C-terminal domain M1S55_11355 PF00440 Bacterial regulatory proteins, tetR family M1S55_11360 PF02771 Acyl-CoA dehydrogenase, N-terminal domain M1S55_11360 PF02770 Acyl-CoA dehydrogenase, middle domain M1S55_11360 PF00441 Acyl-CoA dehydrogenase, C-terminal domain M1S55_11365 PF01039 Carboxyl transferase domain M1S55_11370 PF00378 Enoyl-CoA hydratase/isomerase M1S55_11375 PF18140 Propionyl-coenzyme A carboxylase BT domain M1S55_11375 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain M1S55_11375 PF00364 Biotin-requiring enzyme M1S55_11375 PF00289 Biotin carboxylase, N-terminal domain M1S55_11375 PF02785 Biotin carboxylase C-terminal domain M1S55_11380 PF00682 HMGL-like M1S55_11385 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M1S55_11385 PF03466 LysR substrate binding domain M1S55_11400 PF00441 Acyl-CoA dehydrogenase, C-terminal domain M1S55_11400 PF02771 Acyl-CoA dehydrogenase, N-terminal domain M1S55_11400 PF02770 Acyl-CoA dehydrogenase, middle domain M1S55_11400 PF12806 Acetyl-CoA dehydrogenase C-terminal like M1S55_11410 PF07690 Major Facilitator Superfamily M1S55_11420 PF01144 Coenzyme A transferase M1S55_11425 PF01144 Coenzyme A transferase M1S55_11430 PF07690 Major Facilitator Superfamily M1S55_11435 PF00441 Acyl-CoA dehydrogenase, C-terminal domain M1S55_11435 PF02770 Acyl-CoA dehydrogenase, middle domain M1S55_11435 PF02771 Acyl-CoA dehydrogenase, N-terminal domain M1S55_11440 PF00378 Enoyl-CoA hydratase/isomerase M1S55_11450 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain M1S55_11450 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain M1S55_11450 PF18321 3-hydroxybutyryl-CoA dehydrogenase reduced Rossmann-fold domain M1S55_11455 PF02803 Thiolase, C-terminal domain M1S55_11455 PF00108 Thiolase, N-terminal domain M1S55_11460 PF09339 IclR helix-turn-helix domain M1S55_11465 PF07690 Major Facilitator Superfamily M1S55_11470 PF03060 Nitronate monooxygenase M1S55_11475 PF00378 Enoyl-CoA hydratase/isomerase M1S55_11480 PF09339 IclR helix-turn-helix domain M1S55_11485 PF02515 CoA-transferase family III M1S55_11490 PF00441 Acyl-CoA dehydrogenase, C-terminal domain M1S55_11490 PF02771 Acyl-CoA dehydrogenase, N-terminal domain M1S55_11490 PF02770 Acyl-CoA dehydrogenase, middle domain M1S55_11495 PF07690 Major Facilitator Superfamily M1S55_11500 PF13419 Haloacid dehalogenase-like hydrolase M1S55_11505 PF00266 Aminotransferase class-V M1S55_11510 PF01266 FAD dependent oxidoreductase M1S55_11515 PF00528 Binding-protein-dependent transport system inner membrane component M1S55_11520 PF00005 ABC transporter M1S55_11520 PF08402 TOBE domain M1S55_11530 PF07702 UTRA domain M1S55_11530 PF00392 Bacterial regulatory proteins, gntR family M1S55_11535 PF01494 FAD binding domain M1S55_11540 PF01614 Bacterial transcriptional regulator M1S55_11540 PF09339 IclR helix-turn-helix domain M1S55_11545 PF02525 Flavodoxin-like fold M1S55_11550 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M1S55_11550 PF03466 LysR substrate binding domain M1S55_11555 PF02627 Carboxymuconolactone decarboxylase family M1S55_11560 PF00171 Aldehyde dehydrogenase family M1S55_11570 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin M1S55_11580 PF00171 Aldehyde dehydrogenase family M1S55_11585 PF00296 Luciferase-like monooxygenase M1S55_11590 PF01613 Flavin reductase like domain M1S55_11595 PF12697 Alpha/beta hydrolase family M1S55_11615 PF01292 Prokaryotic cytochrome b561 M1S55_11620 PF00199 Catalase M1S55_11655 PF03061 Thioesterase superfamily M1S55_11660 PF00132 Bacterial transferase hexapeptide (six repeats) M1S55_11665 PF07848 PaaX-like protein M1S55_11665 PF08223 PaaX-like protein C-terminal domain M1S55_11670 PF00501 AMP-binding enzyme M1S55_11670 PF14535 AMP-binding enzyme C-terminal domain M1S55_11675 PF00108 Thiolase, N-terminal domain M1S55_11675 PF02803 Thiolase, C-terminal domain M1S55_11680 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain M1S55_11680 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain M1S55_11680 PF18321 3-hydroxybutyryl-CoA dehydrogenase reduced Rossmann-fold domain M1S55_11685 PF00378 Enoyl-CoA hydratase/isomerase M1S55_11690 PF00378 Enoyl-CoA hydratase/isomerase M1S55_11700 PF01883 Iron-sulfur cluster assembly protein M1S55_11705 PF05138 Phenylacetic acid catabolic protein M1S55_11710 PF06243 Phenylacetic acid degradation B M1S55_11715 PF05138 Phenylacetic acid catabolic protein M1S55_11720 PF00171 Aldehyde dehydrogenase family M1S55_11720 PF01575 MaoC like domain M1S55_11725 PF03313 Serine dehydratase alpha chain M1S55_11725 PF03315 Serine dehydratase beta chain M1S55_11730 PF13520 Amino acid permease M1S55_11735 PF00171 Aldehyde dehydrogenase family M1S55_11740 PF00083 Sugar (and other) transporter M1S55_11750 PF04324 BFD-like [2Fe-2S] binding domain M1S55_11750 PF07992 Pyridine nucleotide-disulphide oxidoreductase M1S55_11760 PF01266 FAD dependent oxidoreductase M1S55_11765 PF05544 Proline racemase M1S55_11770 PF00392 Bacterial regulatory proteins, gntR family M1S55_11780 PF00701 Dihydrodipicolinate synthetase family M1S55_11790 PF00376 MerR family regulatory protein M1S55_11790 PF09278 MerR, DNA binding M1S55_11805 PF02677 Epoxyqueuosine reductase QueH M1S55_11820 PF07690 Major Facilitator Superfamily M1S55_11825 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region M1S55_11835 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M1S55_11835 PF03466 LysR substrate binding domain M1S55_11855 PF05936 Bacterial Type VI secretion, VC_A0110, EvfL, ImpJ, VasE M1S55_11860 PF06812 ImpA, N-terminal, type VI secretion system M1S55_11865 PF00004 ATPase family associated with various cellular activities (AAA) M1S55_11865 PF07724 AAA domain (Cdc48 subfamily) M1S55_11865 PF17871 AAA lid domain M1S55_11865 PF10431 C-terminal, D2-small domain, of ClpB protein M1S55_11880 PF00691 OmpA family M1S55_11880 PF01389 OmpA-like transmembrane domain M1S55_11890 PF06761 Intracellular multiplication and human macrophage-killing M1S55_11890 PF14331 ImcF-related N-terminal domain M1S55_11890 PF06744 Type VI secretion protein IcmF C-terminal M1S55_11905 PF05947 Type VI secretion system, TssF M1S55_11920 PF05943 Type VI secretion protein, EvpB/VC_A0108, tail sheath M1S55_11945 PF00005 ABC transporter M1S55_11950 PF00497 Bacterial extracellular solute-binding proteins, family 3 M1S55_11955 PF01425 Amidase M1S55_11960 PF01402 Ribbon-helix-helix protein, copG family M1S55_11960 PF08753 NikR C terminal nickel binding domain M1S55_11980 PF02525 Flavodoxin-like fold M1S55_11985 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain M1S55_11985 PF02785 Biotin carboxylase C-terminal domain M1S55_11985 PF00289 Biotin carboxylase, N-terminal domain M1S55_12000 PF08240 Alcohol dehydrogenase GroES-like domain M1S55_12000 PF13823 Alcohol dehydrogenase GroES-associated M1S55_12000 PF00107 Zinc-binding dehydrogenase M1S55_12010 PF00440 Bacterial regulatory proteins, tetR family M1S55_12030 PF00654 Voltage gated chloride channel M1S55_12035 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain M1S55_12035 PF02785 Biotin carboxylase C-terminal domain M1S55_12035 PF00364 Biotin-requiring enzyme M1S55_12035 PF00289 Biotin carboxylase, N-terminal domain M1S55_12045 PF07286 Protein of unknown function (DUF1445) M1S55_12050 PF03746 LamB/YcsF family M1S55_12055 PF01566 Natural resistance-associated macrophage protein M1S55_12060 PF03466 LysR substrate binding domain M1S55_12060 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M1S55_12075 PF05593 RHS Repeat M1S55_12075 PF03527 RHS protein M1S55_12090 PF13419 Haloacid dehalogenase-like hydrolase M1S55_12110 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain M1S55_12110 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain M1S55_12130 PF07690 Major Facilitator Superfamily M1S55_12145 PF03279 Bacterial lipid A biosynthesis acyltransferase M1S55_12150 PF00990 Diguanylate cyclase, GGDEF domain M1S55_12150 PF00563 EAL domain M1S55_12150 PF03707 Bacterial signalling protein N terminal repeat M1S55_12155 PF00892 EamA-like transporter family M1S55_12160 PF01037 Lrp/AsnC ligand binding domain M1S55_12165 PF05188 MutS domain II M1S55_12165 PF05192 MutS domain III M1S55_12165 PF05190 MutS family domain IV M1S55_12165 PF00488 MutS domain V M1S55_12165 PF01624 MutS domain I M1S55_12175 PF11953 Domain of unknown function (DUF3470) M1S55_12175 PF00037 4Fe-4S binding domain M1S55_12185 PF01596 O-methyltransferase M1S55_12195 PF00132 Bacterial transferase hexapeptide (six repeats) M1S55_12200 PF01205 Uncharacterized protein family UPF0029 M1S55_12210 PF03412 Peptidase C39 family M1S55_12210 PF00005 ABC transporter M1S55_12210 PF00664 ABC transporter transmembrane region M1S55_12215 PF02321 Outer membrane efflux protein M1S55_12220 PF12399 Branched-chain amino acid ATP-binding cassette transporter M1S55_12220 PF00005 ABC transporter M1S55_12225 PF03968 OstA-like protein M1S55_12240 PF01380 SIS domain M1S55_12240 PF00571 CBS domain M1S55_12245 PF09190 DALR domain M1S55_12245 PF01406 tRNA synthetases class I (C) catalytic domain M1S55_12270 PF01638 HxlR-like helix-turn-helix M1S55_12275 PF07690 Major Facilitator Superfamily M1S55_12300 PF14748 Pyrroline-5-carboxylate reductase dimerisation M1S55_12300 PF03807 NADP oxidoreductase coenzyme F420-dependent M1S55_12310 PF00313 'Cold-shock' DNA-binding domain M1S55_12315 PF01810 LysE type translocator M1S55_12345 PF02601 Exonuclease VII, large subunit M1S55_12345 PF13742 OB-fold nucleic acid binding domain M1S55_12380 PF00376 MerR family regulatory protein M1S55_12380 PF09278 MerR, DNA binding M1S55_12385 PF00403 Heavy-metal-associated domain M1S55_12390 PF00403 Heavy-metal-associated domain M1S55_12395 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M1S55_12395 PF03466 LysR substrate binding domain M1S55_12405 PF00355 Rieske [2Fe-2S] domain M1S55_12405 PF00848 Ring hydroxylating alpha subunit (catalytic domain) M1S55_12410 PF00866 Ring hydroxylating beta subunit M1S55_12415 PF00175 Oxidoreductase NAD-binding domain M1S55_12415 PF00111 2Fe-2S iron-sulfur cluster binding domain M1S55_12415 PF00970 Oxidoreductase FAD-binding domain M1S55_12420 PF00106 short chain dehydrogenase M1S55_12425 PF03594 Benzoate membrane transport protein M1S55_12430 PF07690 Major Facilitator Superfamily M1S55_12440 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III M1S55_12440 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal M1S55_12445 PF11898 Domain of unknown function (DUF3418) M1S55_12445 PF04408 Helicase associated domain (HA2) M1S55_12445 PF00271 Helicase conserved C-terminal domain M1S55_12445 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold M1S55_12445 PF00270 DEAD/DEAH box helicase M1S55_12450 PF10417 C-terminal domain of 1-Cys peroxiredoxin M1S55_12450 PF00578 AhpC/TSA family M1S55_12480 PF00043 Glutathione S-transferase, C-terminal domain M1S55_12480 PF02798 Glutathione S-transferase, N-terminal domain M1S55_12490 PF02390 Putative methyltransferase M1S55_12495 PF00043 Glutathione S-transferase, C-terminal domain M1S55_12495 PF13417 Glutathione S-transferase, N-terminal domain M1S55_12505 PF00691 OmpA family M1S55_12505 PF13488 Glycine zipper M1S55_12510 PF01979 Amidohydrolase family M1S55_12515 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain M1S55_12515 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain M1S55_12525 PF02926 THUMP domain M1S55_12525 PF01170 Putative RNA methylase family UPF0020 M1S55_12525 PF10672 S-adenosylmethionine-dependent methyltransferase M1S55_12540 PF10431 C-terminal, D2-small domain, of ClpB protein M1S55_12540 PF02861 Clp amino terminal domain, pathogenicity island component M1S55_12540 PF17871 AAA lid domain M1S55_12540 PF07724 AAA domain (Cdc48 subfamily) M1S55_12540 PF00004 ATPase family associated with various cellular activities (AAA) M1S55_12555 PF02566 OsmC-like protein M1S55_12565 PF00027 Cyclic nucleotide-binding domain M1S55_12565 PF13545 Crp-like helix-turn-helix domain M1S55_12575 PF00248 Aldo/keto reductase family M1S55_12590 PF00709 Adenylosuccinate synthetase M1S55_12595 PF13393 Histidyl-tRNA synthetase M1S55_12600 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain M1S55_12600 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain M1S55_12605 PF01411 tRNA synthetases class II (A) M1S55_12605 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain M1S55_12605 PF02272 DHHA1 domain M1S55_12610 PF13840 ACT domain M1S55_12610 PF00696 Amino acid kinase family M1S55_12610 PF01842 ACT domain M1S55_12615 PF02599 Global regulator protein family M1S55_12620 PF01351 Ribonuclease HII M1S55_12630 PF01292 Prokaryotic cytochrome b561 M1S55_12635 PF00962 Adenosine/AMP deaminase M1S55_12640 PF00860 Permease family M1S55_12650 PF00743 Flavin-binding monooxygenase-like M1S55_12655 PF00106 short chain dehydrogenase M1S55_12665 PF17954 Quercetinase C-terminal cupin domain M1S55_12665 PF02678 Pirin M1S55_12670 PF00440 Bacterial regulatory proteins, tetR family M1S55_12670 PF17932 Tetracyclin repressor-like, C-terminal domain M1S55_12680 PF00106 short chain dehydrogenase M1S55_12700 PF02796 Helix-turn-helix domain of resolvase M1S55_12700 PF00239 Resolvase, N terminal domain M1S55_12705 PF11809 Domain of unknown function (DUF3330) M1S55_12705 PF00563 EAL domain M1S55_12715 PF13610 DDE domain M1S55_12735 PF13610 DDE domain M1S55_12740 PF02796 Helix-turn-helix domain of resolvase M1S55_12740 PF00239 Resolvase, N terminal domain M1S55_12750 PF13610 DDE domain M1S55_12760 PF02796 Helix-turn-helix domain of resolvase M1S55_12760 PF00239 Resolvase, N terminal domain M1S55_12765 PF13610 DDE domain M1S55_12775 PF04958 Arginine N-succinyltransferase beta subunit M1S55_12780 PF00202 Aminotransferase class-III M1S55_12790 PF00171 Aldehyde dehydrogenase family M1S55_12800 PF07729 FCD domain M1S55_12800 PF00392 Bacterial regulatory proteins, gntR family M1S55_12810 PF00324 Amino acid permease M1S55_12815 PF01266 FAD dependent oxidoreductase M1S55_12820 PF00324 Amino acid permease M1S55_12860 PF05593 RHS Repeat M1S55_12860 PF03527 RHS protein M1S55_12885 PF03180 NLPA lipoprotein M1S55_12890 PF05987 Bacterial protein of unknown function (DUF898) M1S55_12905 PF00724 NADH:flavin oxidoreductase / NADH oxidase family M1S55_12905 PF07992 Pyridine nucleotide-disulphide oxidoreductase M1S55_12910 PF00764 Arginosuccinate synthase M1S55_12915 PF00990 Diguanylate cyclase, GGDEF domain M1S55_12915 PF01590 GAF domain M1S55_12915 PF00563 EAL domain M1S55_12915 PF00360 Phytochrome region M1S55_12920 PF01979 Amidohydrolase family M1S55_12925 PF00929 Exonuclease M1S55_12935 PF00593 TonB dependent receptor M1S55_12935 PF07715 TonB-dependent Receptor Plug Domain M1S55_12940 PF07992 Pyridine nucleotide-disulphide oxidoreductase M1S55_12940 PF00724 NADH:flavin oxidoreductase / NADH oxidase family M1S55_12945 PF08352 Oligopeptide/dipeptide transporter, C-terminal region M1S55_12945 PF00005 ABC transporter M1S55_12950 PF00528 Binding-protein-dependent transport system inner membrane component M1S55_12950 PF12911 N-terminal TM domain of oligopeptide transport permease C M1S55_12955 PF00528 Binding-protein-dependent transport system inner membrane component M1S55_12960 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle M1S55_12965 PF01476 LysM domain M1S55_12965 PF01464 Transglycosylase SLT domain M1S55_12965 PF01476 LysM domain M1S55_12965 PF01464 Transglycosylase SLT domain M1S55_12970 PF00929 Exonuclease M1S55_12980 PF00293 NUDIX domain M1S55_12980 PF09297 NADH pyrophosphatase zinc ribbon domain M1S55_12990 PF04972 BON domain M1S55_12995 PF02021 Uncharacterised protein family UPF0102 M1S55_13000 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases M1S55_13010 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M1S55_13010 PF03466 LysR substrate binding domain M1S55_13015 PF01810 LysE type translocator M1S55_13025 PF13411 MerR HTH family regulatory protein M1S55_13035 PF01494 FAD binding domain M1S55_13040 PF01494 FAD binding domain M1S55_13045 PF00557 Metallopeptidase family M24 M1S55_13045 PF05195 Aminopeptidase P, N-terminal domain M1S55_13135 PF01464 Transglycosylase SLT domain M1S55_13135 PF01551 Peptidase family M23 M1S55_13135 PF10145 Phage-related minor tail protein M1S55_13195 PF04860 Phage portal protein M1S55_13295 PF00772 DnaB-like helicase N terminal domain M1S55_13295 PF03796 DnaB-like helicase C terminal domain M1S55_13310 PF01726 LexA DNA binding domain M1S55_13310 PF00717 Peptidase S24-like M1S55_13415 PF01551 Peptidase family M23 M1S55_13415 PF01476 LysM domain M1S55_13415 PF08525 Opacity-associated protein A N-terminal motif M1S55_13740 PF01812 5-formyltetrahydrofolate cyclo-ligase family M1S55_13745 PF00691 OmpA family M1S55_13745 PF04355 SmpA / OmlA family M1S55_13750 PF05662 Coiled stalk of trimeric autotransporter adhesin M1S55_13750 PF13018 Extended Signal Peptide of Type V secretion system M1S55_13750 PF03895 YadA-like membrane anchor domain M1S55_13750 PF05658 Head domain of trimeric autotransporter adhesin M1S55_13755 PF00004 ATPase family associated with various cellular activities (AAA) M1S55_13755 PF05362 Lon protease (S16) C-terminal proteolytic domain M1S55_13755 PF02190 ATP-dependent protease La (LON) substrate-binding domain M1S55_13760 PF02590 Predicted SPOUT methyltransferase M1S55_13765 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase M1S55_13775 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase M1S55_13775 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain M1S55_13780 PF04060 Putative Fe-S cluster M1S55_13785 PF10576 Iron-sulfur binding domain of endonuclease III M1S55_13785 PF00633 Helix-hairpin-helix motif M1S55_13785 PF00730 HhH-GPD superfamily base excision DNA repair protein M1S55_13795 PF05191 Adenylate kinase, active site lid M1S55_13810 PF00905 Penicillin binding protein transpeptidase domain M1S55_13810 PF03717 Penicillin-binding Protein dimerisation domain M1S55_13830 PF01730 UreF M1S55_13835 PF05194 UreE urease accessory protein, C-terminal domain M1S55_13835 PF02814 UreE urease accessory protein, N-terminal domain M1S55_13840 PF01979 Amidohydrolase family M1S55_13840 PF00449 Urease alpha-subunit, N-terminal domain M1S55_13845 PF00699 Urease beta subunit M1S55_13850 PF00547 Urease, gamma subunit M1S55_13855 PF01774 UreD urease accessory protein M1S55_13870 PF00463 Isocitrate lyase family M1S55_13875 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M1S55_13875 PF03466 LysR substrate binding domain M1S55_13880 PF00571 CBS domain M1S55_13880 PF01595 Cyclin M transmembrane N-terminal domain M1S55_13880 PF03471 Transporter associated domain M1S55_13885 PF03600 Citrate transporter M1S55_13900 PF00009 Elongation factor Tu GTP binding domain M1S55_13905 PF01507 Phosphoadenosine phosphosulfate reductase family M1S55_13915 PF14052 Capsule assembly protein Wzi M1S55_13920 PF00152 tRNA synthetases class II (D, K and N) M1S55_13920 PF01336 OB-fold nucleic acid binding domain M1S55_13935 PF00301 Rubredoxin M1S55_13940 PF07992 Pyridine nucleotide-disulphide oxidoreductase M1S55_13940 PF18113 Rubredoxin binding C-terminal domain M1S55_13945 PF00561 alpha/beta hydrolase fold M1S55_13950 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M1S55_13950 PF03466 LysR substrate binding domain M1S55_13960 PF13089 Polyphosphate kinase N-terminal domain M1S55_13960 PF02503 Polyphosphate kinase middle domain M1S55_13960 PF13090 Polyphosphate kinase C-terminal domain 2 M1S55_13960 PF17941 Polyphosphate kinase C-terminal domain 1 M1S55_13965 PF00912 Transglycosylase M1S55_13970 PF01694 Rhomboid family M1S55_13980 PF00005 ABC transporter M1S55_13985 PF13472 GDSL-like Lipase/Acylhydrolase family M1S55_13990 PF00484 Carbonic anhydrase M1S55_14010 PF01521 Iron-sulphur cluster biosynthesis M1S55_14010 PF01106 NifU-like domain M1S55_14020 PF00884 Sulfatase M1S55_14025 PF03781 Sulfatase-modifying factor enzyme 1 M1S55_14045 PF01384 Phosphate transporter family M1S55_14050 PF02965 Vitamin B12 dependent methionine synthase, activation domain M1S55_14050 PF02310 B12 binding domain M1S55_14050 PF02607 B12 binding domain M1S55_14050 PF00809 Pterin binding enzyme M1S55_14050 PF02574 Homocysteine S-methyltransferase M1S55_14055 PF02780 Transketolase, C-terminal domain M1S55_14055 PF02779 Transketolase, pyrimidine binding domain M1S55_14060 PF00456 Transketolase, thiamine diphosphate binding domain M1S55_14065 PF07690 Major Facilitator Superfamily M1S55_14075 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M1S55_14075 PF03466 LysR substrate binding domain M1S55_14085 PF01263 Aldose 1-epimerase M1S55_14090 PF07690 Major Facilitator Superfamily M1S55_14095 PF02311 AraC-like ligand binding domain M1S55_14095 PF12833 Helix-turn-helix domain M1S55_14100 PF04960 Glutaminase M1S55_14105 PF01327 Polypeptide deformylase M1S55_14110 PF07690 Major Facilitator Superfamily M1S55_14120 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain M1S55_14120 PF00205 Thiamine pyrophosphate enzyme, central domain M1S55_14120 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain M1S55_14125 PF00171 Aldehyde dehydrogenase family M1S55_14130 PF01958 Domain of unknown function DUF108 M1S55_14130 PF03447 Homoserine dehydrogenase, NAD binding domain M1S55_14140 PF12697 Alpha/beta hydrolase family M1S55_14150 PF07690 Major Facilitator Superfamily M1S55_14155 PF07992 Pyridine nucleotide-disulphide oxidoreductase M1S55_14155 PF14759 Reductase C-terminal M1S55_14160 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily M1S55_14170 PF00355 Rieske [2Fe-2S] domain M1S55_14180 PF00355 Rieske [2Fe-2S] domain M1S55_14185 PF01614 Bacterial transcriptional regulator M1S55_14185 PF09339 IclR helix-turn-helix domain M1S55_14210 PF00535 Glycosyl transferase family 2 M1S55_14220 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase M1S55_14225 PF07152 YaeQ protein M1S55_14230 PF00375 Sodium:dicarboxylate symporter family M1S55_14235 PF02492 CobW/HypB/UreG, nucleotide-binding domain M1S55_14235 PF07683 Cobalamin synthesis protein cobW C-terminal domain M1S55_14245 PF03061 Thioesterase superfamily M1S55_14260 PF02028 BCCT, betaine/carnitine/choline family transporter M1S55_14265 PF00440 Bacterial regulatory proteins, tetR family M1S55_14265 PF13977 BetI-type transcriptional repressor, C-terminal M1S55_14270 PF00171 Aldehyde dehydrogenase family M1S55_14280 PF06039 Malate:quinone oxidoreductase (Mqo) M1S55_14290 PF02574 Homocysteine S-methyltransferase M1S55_14295 PF13520 Amino acid permease M1S55_14320 PF00701 Dihydrodipicolinate synthetase family M1S55_14325 PF00083 Sugar (and other) transporter M1S55_14405 PF10544 T5orf172 domain M1S55_14410 PF13614 AAA domain M1S55_14430 PF00905 Penicillin binding protein transpeptidase domain M1S55_14550 PF05016 ParE toxin of type II toxin-antitoxin system, parDE M1S55_14695 PF07007 Lysozyme inhibitor LprI M1S55_14740 PF01695 IstB-like ATP binding protein M1S55_14750 PF00145 C-5 cytosine-specific DNA methylase M1S55_14795 PF01381 Helix-turn-helix M1S55_14795 PF00717 Peptidase S24-like M1S55_14830 PF00929 Exonuclease M1S55_14910 PF07690 Major Facilitator Superfamily M1S55_14915 PF13533 Biotin-lipoyl like M1S55_14920 PF03061 Thioesterase superfamily M1S55_14925 PF00490 Delta-aminolevulinic acid dehydratase M1S55_14930 PF01266 FAD dependent oxidoreductase M1S55_14935 PF01370 NAD dependent epimerase/dehydratase family M1S55_14935 PF08338 Domain of unknown function (DUF1731) M1S55_14955 PF12320 Type 5 capsule protein repressor C-terminal domain M1S55_14955 PF00149 Calcineurin-like phosphoesterase M1S55_14965 PF01168 Alanine racemase, N-terminal domain M1S55_14970 PF00437 Type II/IV secretion system protein M1S55_14975 PF00437 Type II/IV secretion system protein M1S55_14980 PF01475 Ferric uptake regulator family M1S55_14985 PF04355 SmpA / OmlA family M1S55_14990 PF03658 RnfH family Ubiquitin M1S55_15000 PF01814 Hemerythrin HHE cation binding domain M1S55_15005 PF13230 Glutamine amidotransferases class-II M1S55_15015 PF00696 Amino acid kinase family M1S55_15020 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain M1S55_15020 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III M1S55_15020 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I M1S55_15020 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II M1S55_15025 PF00692 dUTPase M1S55_15030 PF00580 UvrD/REP helicase N-terminal domain M1S55_15030 PF13361 UvrD-like helicase C-terminal domain M1S55_15035 PF00691 OmpA family M1S55_15035 PF13488 Glycine zipper M1S55_15040 PF01553 Acyltransferase M1S55_15050 PF03775 Septum formation inhibitor MinC, C-terminal domain M1S55_15055 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain M1S55_15060 PF03776 Septum formation topological specificity factor MinE M1S55_15075 PF01810 LysE type translocator M1S55_15080 PF13491 4TM region of DNA translocase FtsK/SpoIIIE M1S55_15080 PF17854 FtsK alpha domain M1S55_15080 PF09397 Ftsk gamma domain M1S55_15080 PF01580 FtsK/SpoIIIE family M1S55_15085 PF07992 Pyridine nucleotide-disulphide oxidoreductase M1S55_15090 PF03588 Leucyl/phenylalanyl-tRNA protein transferase M1S55_15095 PF04377 Arginine-tRNA-protein transferase, C terminus M1S55_15095 PF04376 Arginine-tRNA-protein transferase, N terminus M1S55_15100 PF00583 Acetyltransferase (GNAT) family M1S55_15115 PF00009 Elongation factor Tu GTP binding domain M1S55_15115 PF03144 Elongation factor Tu domain 2 M1S55_15115 PF03143 Elongation factor Tu C-terminal domain M1S55_15120 PF00679 Elongation factor G C-terminus M1S55_15120 PF14492 Elongation Factor G, domain II M1S55_15120 PF03764 Elongation factor G, domain IV M1S55_15120 PF03144 Elongation factor Tu domain 2 M1S55_15120 PF00009 Elongation factor Tu GTP binding domain M1S55_15125 PF00177 Ribosomal protein S7p/S5e M1S55_15130 PF00164 Ribosomal protein S12/S23 M1S55_15140 PF00109 Beta-ketoacyl synthase, N-terminal domain M1S55_15140 PF02801 Beta-ketoacyl synthase, C-terminal domain M1S55_15145 PF03653 Uncharacterised protein family (UPF0093) M1S55_15150 PF02678 Pirin M1S55_15150 PF05726 Pirin C-terminal cupin domain M1S55_15160 PF00795 Carbon-nitrogen hydrolase M1S55_15160 PF02540 NAD synthase M1S55_15175 PF00970 Oxidoreductase FAD-binding domain M1S55_15175 PF00111 2Fe-2S iron-sulfur cluster binding domain M1S55_15175 PF00175 Oxidoreductase NAD-binding domain M1S55_15180 PF00171 Aldehyde dehydrogenase family M1S55_15185 PF00355 Rieske [2Fe-2S] domain M1S55_15185 PF00848 Ring hydroxylating alpha subunit (catalytic domain) M1S55_15190 PF07859 alpha/beta hydrolase fold M1S55_15195 PF02028 BCCT, betaine/carnitine/choline family transporter M1S55_15200 PF00180 Isocitrate/isopropylmalate dehydrogenase M1S55_15205 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M1S55_15205 PF03466 LysR substrate binding domain M1S55_15225 PF00037 4Fe-4S binding domain M1S55_15230 PF01467 Cytidylyltransferase-like M1S55_15235 PF01668 SmpB protein M1S55_15240 PF03358 NADPH-dependent FMN reductase M1S55_15245 PF02578 Multi-copper polyphenol oxidoreductase laccase M1S55_15250 PF00849 RNA pseudouridylate synthase M1S55_15250 PF01479 S4 domain M1S55_15255 PF13525 Outer membrane lipoprotein M1S55_15260 PF08275 DNA primase catalytic core, N-terminal domain M1S55_15260 PF08278 DNA primase DnaG DnaB-binding M1S55_15260 PF10410 DnaB-helicase binding domain of primase M1S55_15260 PF01807 CHC2 zinc finger M1S55_15265 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain M1S55_15265 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain M1S55_15265 PF01488 Shikimate / quinate 5-dehydrogenase M1S55_15275 PF03550 Outer membrane lipoprotein LolB M1S55_15280 PF08544 GHMP kinases C terminal M1S55_15280 PF00288 GHMP kinases N terminal domain M1S55_15305 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase M1S55_15305 PF14572 Phosphoribosyl synthetase-associated domain M1S55_15310 PF01386 Ribosomal L25p family M1S55_15315 PF01195 Peptidyl-tRNA hydrolase M1S55_15320 PF02261 Aspartate decarboxylase M1S55_15335 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase M1S55_15345 PF02581 Thiamine monophosphate synthase M1S55_15345 PF03070 TENA/THI-4/PQQC family M1S55_15345 PF08543 Phosphomethylpyrimidine kinase M1S55_15350 PF04972 BON domain M1S55_15350 PF01476 LysM domain M1S55_15355 PF00550 Phosphopantetheine attachment site M1S55_15365 PF00698 Acyl transferase domain M1S55_15370 PF01783 Ribosomal L32p protein family M1S55_15375 PF02620 Large ribosomal RNA subunit accumulation protein YceD M1S55_15380 PF04315 Elongation factor P hydroxylase M1S55_15385 PF01300 Telomere recombination M1S55_15390 PF02616 Segregation and condensation protein ScpA M1S55_15395 PF04079 Segregation and condensation complex subunit ScpB M1S55_15400 PF01479 S4 domain M1S55_15400 PF00849 RNA pseudouridylate synthase M1S55_15415 PF00155 Aminotransferase class I and II M1S55_15420 PF00202 Aminotransferase class-III M1S55_15420 PF06968 Biotin and Thiamin Synthesis associated domain M1S55_15420 PF04055 Radical SAM superfamily M1S55_15425 PF12697 Alpha/beta hydrolase family M1S55_15425 PF08241 Methyltransferase domain M1S55_15435 PF00982 Glycosyltransferase family 20 M1S55_15440 PF07690 Major Facilitator Superfamily M1S55_15445 PF00210 Ferritin-like domain M1S55_15450 PF00533 BRCA1 C Terminus (BRCT) domain M1S55_15450 PF01653 NAD-dependent DNA ligase adenylation domain M1S55_15450 PF03120 NAD-dependent DNA ligase OB-fold domain M1S55_15450 PF03119 NAD-dependent DNA ligase C4 zinc finger domain M1S55_15450 PF12826 Helix-hairpin-helix motif M1S55_15460 PF02463 RecF/RecN/SMC N terminal domain M1S55_15460 PF06470 SMC proteins Flexible Hinge Domain M1S55_15470 PF01925 Sulfite exporter TauE/SafE M1S55_15480 PF03309 Type III pantothenate kinase M1S55_15485 PF00448 SRP54-type protein, GTPase domain M1S55_15485 PF02881 SRP54-type protein, helical bundle domain M1S55_15485 PF02978 Signal peptide binding domain M1S55_15495 PF01207 Dihydrouridine synthase (Dus) M1S55_15525 PF00692 dUTPase M1S55_15540 PF01048 Phosphorylase superfamily M1S55_15545 PF10609 NUBPL iron-transfer P-loop NTPase M1S55_15555 PF09334 tRNA synthetases class I (M) M1S55_15555 PF01588 Putative tRNA binding domain M1S55_15580 PF13533 Biotin-lipoyl like M1S55_15585 PF00291 Pyridoxal-phosphate dependent enzyme M1S55_15605 PF05552 Conserved TM helix M1S55_15625 PF00175 Oxidoreductase NAD-binding domain M1S55_15625 PF00970 Oxidoreductase FAD-binding domain M1S55_15630 PF03466 LysR substrate binding domain M1S55_15630 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M1S55_15635 PF00313 'Cold-shock' DNA-binding domain M1S55_15645 PF00361 Proton-conducting membrane transporter M1S55_15650 PF00361 Proton-conducting membrane transporter M1S55_15655 PF00361 Proton-conducting membrane transporter M1S55_15655 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus M1S55_15660 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L M1S55_15665 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 M1S55_15670 PF12838 4Fe-4S dicluster domain M1S55_15675 PF00146 NADH dehydrogenase M1S55_15680 PF04879 Molybdopterin oxidoreductase Fe4S4 domain M1S55_15680 PF00384 Molybdopterin oxidoreductase M1S55_15680 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region M1S55_15685 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit M1S55_15685 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region M1S55_15685 PF10531 SLBB domain M1S55_15695 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit M1S55_15695 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit M1S55_15700 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit M1S55_15705 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 M1S55_15710 PF17151 Periplasmic sensor domain M1S55_15710 PF00990 Diguanylate cyclase, GGDEF domain M1S55_15720 PF00512 His Kinase A (phospho-acceptor) domain M1S55_15720 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M1S55_15720 PF00672 HAMP domain M1S55_15725 PF00072 Response regulator receiver domain M1S55_15725 PF00486 Transcriptional regulatory protein, C terminal M1S55_15735 PF00317 Ribonucleotide reductase, all-alpha domain M1S55_15735 PF03477 ATP cone domain M1S55_15735 PF02867 Ribonucleotide reductase, barrel domain M1S55_15745 PF00268 Ribonucleotide reductase, small chain M1S55_15755 PF00672 HAMP domain M1S55_15755 PF00512 His Kinase A (phospho-acceptor) domain M1S55_15755 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M1S55_15755 PF13755 Sensor N-terminal transmembrane domain M1S55_15755 PF13756 Stimulus-sensing domain M1S55_15825 PF13360 PQQ-like domain M1S55_15825 PF01011 PQQ enzyme repeat M1S55_15850 PF02567 Phenazine biosynthesis-like protein M1S55_15875 PF01613 Flavin reductase like domain M1S55_15880 PF08267 Cobalamin-independent synthase, N-terminal domain M1S55_15880 PF01717 Cobalamin-independent synthase, Catalytic domain M1S55_15890 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M1S55_15890 PF03466 LysR substrate binding domain M1S55_15895 PF01810 LysE type translocator M1S55_15905 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term M1S55_15905 PF12833 Helix-turn-helix domain M1S55_15910 PF07687 Peptidase dimerisation domain M1S55_15910 PF01546 Peptidase family M20/M25/M40 M1S55_15920 PF03466 LysR substrate binding domain M1S55_15920 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M1S55_15925 PF07690 Major Facilitator Superfamily M1S55_15935 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M1S55_15935 PF03466 LysR substrate binding domain M1S55_15940 PF14537 Cytochrome c3 M1S55_15940 PF00890 FAD binding domain M1S55_15950 PF02515 CoA-transferase family III M1S55_15955 PF07690 Major Facilitator Superfamily M1S55_15960 PF02770 Acyl-CoA dehydrogenase, middle domain M1S55_15960 PF02771 Acyl-CoA dehydrogenase, N-terminal domain M1S55_15960 PF00441 Acyl-CoA dehydrogenase, C-terminal domain M1S55_15965 PF03466 LysR substrate binding domain M1S55_15965 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M1S55_15970 PF00107 Zinc-binding dehydrogenase M1S55_15970 PF08240 Alcohol dehydrogenase GroES-like domain M1S55_15975 PF00962 Adenosine/AMP deaminase M1S55_16000 PF02445 Quinolinate synthetase A protein M1S55_16005 PF01960 ArgJ family M1S55_16015 PF00893 Small Multidrug Resistance protein M1S55_16025 PF05275 Copper resistance protein B precursor (CopB) M1S55_16030 PF00394 Multicopper oxidase M1S55_16030 PF07731 Multicopper oxidase M1S55_16030 PF07732 Multicopper oxidase M1S55_16045 PF00834 Ribulose-phosphate 3 epimerase family M1S55_16055 PF00756 Putative esterase M1S55_16065 PF04445 Putative SAM-dependent methyltransferase M1S55_16070 PF00814 Glycoprotease family M1S55_16075 PF00132 Bacterial transferase hexapeptide (six repeats) M1S55_16080 PF00293 NUDIX domain M1S55_16120 PF04715 Anthranilate synthase component I, N terminal region M1S55_16120 PF00425 chorismate binding enzyme M1S55_16125 PF00155 Aminotransferase class I and II M1S55_16130 PF00815 Histidinol dehydrogenase M1S55_16135 PF01634 ATP phosphoribosyltransferase M1S55_16145 PF01722 BolA-like protein M1S55_16150 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein M1S55_16200 PF00795 Carbon-nitrogen hydrolase M1S55_16210 PF01047 MarR family M1S55_16215 PF02566 OsmC-like protein M1S55_16220 PF00437 Type II/IV secretion system protein M1S55_16240 PF01367 5'-3' exonuclease, C-terminal SAM fold M1S55_16240 PF00476 DNA polymerase family A M1S55_16240 PF01612 3'-5' exonuclease M1S55_16240 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain M1S55_16245 PF02325 YGGT family M1S55_16250 PF03807 NADP oxidoreductase coenzyme F420-dependent M1S55_16250 PF14748 Pyrroline-5-carboxylate reductase dimerisation M1S55_16255 PF11734 TilS substrate C-terminal domain M1S55_16255 PF09179 TilS substrate binding domain M1S55_16255 PF01171 PP-loop family M1S55_16260 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit M1S55_16265 PF02541 Ppx/GppA phosphatase family M1S55_16270 PF00085 Thioredoxin M1S55_16275 PF07497 Rho termination factor, RNA-binding domain M1S55_16275 PF07498 Rho termination factor, N-terminal domain M1S55_16275 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain M1S55_16290 PF00216 Bacterial DNA-binding protein M1S55_16295 PF03483 B3/4 domain M1S55_16295 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain M1S55_16295 PF01588 Putative tRNA binding domain M1S55_16295 PF03147 Ferredoxin-fold anticodon binding domain M1S55_16295 PF03484 tRNA synthetase B5 domain M1S55_16300 PF01409 tRNA synthetases class II core domain (F) M1S55_16300 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain M1S55_16320 PF00453 Ribosomal protein L20 M1S55_16325 PF01632 Ribosomal protein L35 M1S55_16335 PF07690 Major Facilitator Superfamily M1S55_16340 PF09335 SNARE associated Golgi protein M1S55_16345 PF00043 Glutathione S-transferase, C-terminal domain M1S55_16345 PF02798 Glutathione S-transferase, N-terminal domain M1S55_16350 PF00707 Translation initiation factor IF-3, C-terminal domain M1S55_16350 PF05198 Translation initiation factor IF-3, N-terminal domain M1S55_16355 PF02824 TGS domain M1S55_16355 PF03129 Anticodon binding domain M1S55_16355 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain M1S55_16355 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) M1S55_16360 PF00501 AMP-binding enzyme M1S55_16360 PF13193 AMP-binding enzyme C-terminal domain M1S55_16365 PF04751 Protein of unknown function (DUF615) M1S55_16370 PF00381 PTS HPr component phosphorylation site M1S55_16375 PF03668 P-loop ATPase protein family M1S55_16380 PF02569 Pantoate-beta-alanine ligase M1S55_16385 PF02548 Ketopantoate hydroxymethyltransferase M1S55_16390 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) M1S55_16395 PF01743 Poly A polymerase head domain M1S55_16395 PF12626 Polymerase A arginine-rich C-terminus M1S55_16395 PF12627 Probable RNA and SrmB- binding site of polymerase A M1S55_16405 PF03819 MazG nucleotide pyrophosphohydrolase domain M1S55_16415 PF13291 ACT domain M1S55_16415 PF04607 Region found in RelA / SpoT proteins M1S55_16415 PF02824 TGS domain M1S55_16420 PF05958 tRNA (Uracil-5-)-methyltransferase M1S55_16430 PF00291 Pyridoxal-phosphate dependent enzyme M1S55_16435 PF00672 HAMP domain M1S55_16435 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M1S55_16435 PF00512 His Kinase A (phospho-acceptor) domain M1S55_16435 PF01627 Hpt domain M1S55_16435 PF00072 Response regulator receiver domain M1S55_16435 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) M1S55_16440 PF00378 Enoyl-CoA hydratase/isomerase M1S55_16445 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase M1S55_16445 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase M1S55_16450 PF01261 Xylose isomerase-like TIM barrel M1S55_16460 PF00106 short chain dehydrogenase M1S55_16465 PF02233 NAD(P) transhydrogenase beta subunit M1S55_16470 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch M1S55_16475 PF01262 Alanine dehydrogenase/PNT, C-terminal domain M1S55_16475 PF05222 Alanine dehydrogenase/PNT, N-terminal domain M1S55_16480 PF00892 EamA-like transporter family M1S55_16490 PF07690 Major Facilitator Superfamily M1S55_16495 PF01207 Dihydrouridine synthase (Dus) M1S55_16505 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M1S55_16505 PF03466 LysR substrate binding domain M1S55_16515 PF00899 ThiF family M1S55_16525 PF00694 Aconitase C-terminal domain M1S55_16525 PF00330 Aconitase family (aconitate hydratase) M1S55_16530 PF01026 TatD related DNase M1S55_16545 PF00009 Elongation factor Tu GTP binding domain M1S55_16545 PF03144 Elongation factor Tu domain 2 M1S55_16545 PF16658 Class II release factor RF3, C-terminal domain M1S55_16565 PF00990 Diguanylate cyclase, GGDEF domain M1S55_16565 PF03707 Bacterial signalling protein N terminal repeat M1S55_16565 PF00563 EAL domain M1S55_16570 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain M1S55_16570 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain M1S55_16575 PF10369 Small subunit of acetolactate synthase M1S55_16580 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain M1S55_16580 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain M1S55_16580 PF00205 Thiamine pyrophosphate enzyme, central domain M1S55_16590 PF08264 Anticodon-binding domain of tRNA M1S55_16590 PF00133 tRNA synthetases class I (I, L, M and V) M1S55_16590 PF09334 tRNA synthetases class I (M) M1S55_16590 PF13603 Leucyl-tRNA synthetase, Domain 2 M1S55_16605 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion M1S55_16610 PF00005 ABC transporter M1S55_16610 PF02687 FtsX-like permease family M1S55_16610 PF12704 MacB-like periplasmic core domain M1S55_16615 PF02321 Outer membrane efflux protein M1S55_16630 PF00929 Exonuclease M1S55_16635 PF03193 RsgA GTPase M1S55_16645 PF00462 Glutaredoxin M1S55_16650 PF02556 Preprotein translocase subunit SecB M1S55_16665 PF00109 Beta-ketoacyl synthase, N-terminal domain M1S55_16665 PF02801 Beta-ketoacyl synthase, C-terminal domain M1S55_16680 PF02801 Beta-ketoacyl synthase, C-terminal domain M1S55_16680 PF00109 Beta-ketoacyl synthase, N-terminal domain M1S55_16690 PF04820 Tryptophan halogenase M1S55_16710 PF00221 Aromatic amino acid lyase M1S55_16725 PF00501 AMP-binding enzyme M1S55_16725 PF13193 AMP-binding enzyme C-terminal domain M1S55_16735 PF00550 Phosphopantetheine attachment site M1S55_16740 PF00550 Phosphopantetheine attachment site M1S55_16755 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal M1S55_16755 PF01926 50S ribosome-binding GTPase M1S55_16760 PF13360 PQQ-like domain M1S55_16770 PF03129 Anticodon binding domain M1S55_16770 PF13393 Histidyl-tRNA synthetase M1S55_16775 PF04551 GcpE protein M1S55_16780 PF13464 Domain of unknown function (DUF4115) M1S55_16790 PF04055 Radical SAM superfamily M1S55_16795 PF00334 Nucleoside diphosphate kinase M1S55_16800 PF04384 Iron-sulphur cluster assembly M1S55_16805 PF01569 PAP2 superfamily M1S55_16810 PF13439 Glycosyltransferase Family 4 M1S55_16810 PF00534 Glycosyl transferases group 1 M1S55_16815 PF00595 PDZ domain M1S55_16815 PF17804 Tail specific protease N-terminal domain M1S55_16815 PF03572 Peptidase family S41 M1S55_16815 PF11818 C-terminal domain of tail specific protease (DUF3340) M1S55_16820 PF00933 Glycosyl hydrolase family 3 N terminal domain M1S55_16830 PF00561 alpha/beta hydrolase fold M1S55_16835 PF00171 Aldehyde dehydrogenase family M1S55_16840 PF00171 Aldehyde dehydrogenase family M1S55_16845 PF01202 Shikimate kinase M1S55_16850 PF02447 GntP family permease M1S55_16855 PF01081 KDPG and KHG aldolase M1S55_16860 PF00920 Dehydratase family M1S55_16865 PF00871 Acetokinase family M1S55_16870 PF07085 DRTGG domain M1S55_16870 PF01515 Phosphate acetyl/butaryl transferase M1S55_16875 PF05681 Fumarate hydratase (Fumerase) M1S55_16875 PF05683 Fumarase C-terminus M1S55_16890 PF07724 AAA domain (Cdc48 subfamily) M1S55_16890 PF10431 C-terminal, D2-small domain, of ClpB protein M1S55_16890 PF06689 ClpX C4-type zinc finger M1S55_16895 PF00574 Clp protease M1S55_16900 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase M1S55_16900 PF05698 Bacterial trigger factor protein (TF) C-terminus M1S55_16900 PF05697 Bacterial trigger factor protein (TF) M1S55_16905 PF07715 TonB-dependent Receptor Plug Domain M1S55_16905 PF00593 TonB dependent receptor M1S55_16910 PF18331 PKHD-type hydroxylase C-terminal domain M1S55_16910 PF13640 2OG-Fe(II) oxygenase superfamily M1S55_16915 PF00682 HMGL-like M1S55_16915 PF08502 LeuA allosteric (dimerisation) domain M1S55_16920 PF00561 alpha/beta hydrolase fold M1S55_16925 PF07021 Methionine biosynthesis protein MetW M1S55_16925 PF00561 alpha/beta hydrolase fold M1S55_16935 PF01725 Ham1 family M1S55_16945 PF02416 mttA/Hcf106 family M1S55_16950 PF02416 mttA/Hcf106 family M1S55_16955 PF00902 Sec-independent protein translocase protein (TatC) M1S55_16975 PF01790 Prolipoprotein diacylglyceryl transferase M1S55_16990 PF00303 Thymidylate synthase M1S55_16995 PF00186 Dihydrofolate reductase M1S55_17005 PF01625 Peptide methionine sulfoxide reductase M1S55_17015 PF01618 MotA/TolQ/ExbB proton channel family M1S55_17025 PF00551 Formyl transferase M1S55_17025 PF01842 ACT domain M1S55_17035 PF00171 Aldehyde dehydrogenase family M1S55_17040 PF00830 Ribosomal L28 family M1S55_17045 PF00471 Ribosomal protein L33 M1S55_17050 PF02254 TrkA-N domain M1S55_17050 PF00999 Sodium/hydrogen exchanger family M1S55_17070 PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) M1S55_17075 PF00580 UvrD/REP helicase N-terminal domain M1S55_17075 PF13361 UvrD-like helicase C-terminal domain M1S55_17090 PF01751 Toprim domain M1S55_17090 PF01396 Topoisomerase DNA binding C4 zinc finger M1S55_17090 PF08272 Topoisomerase I zinc-ribbon-like M1S55_17090 PF01131 DNA topoisomerase M1S55_17100 PF01638 HxlR-like helix-turn-helix M1S55_17105 PF08240 Alcohol dehydrogenase GroES-like domain M1S55_17105 PF00107 Zinc-binding dehydrogenase M1S55_17110 PF04102 SlyX M1S55_17115 PF00005 ABC transporter M1S55_17115 PF16326 ABC transporter C-terminal domain M1S55_17115 PF12848 ABC transporter M1S55_17120 PF01810 LysE type translocator M1S55_17125 PF03279 Bacterial lipid A biosynthesis acyltransferase M1S55_17135 PF00375 Sodium:dicarboxylate symporter family M1S55_17145 PF02774 Semialdehyde dehydrogenase, dimerisation domain M1S55_17145 PF01118 Semialdehyde dehydrogenase, NAD binding domain M1S55_17165 PF01416 tRNA pseudouridine synthase M1S55_17175 PF01176 Translation initiation factor 1A / IF-1 M1S55_17190 PF00180 Isocitrate/isopropylmalate dehydrogenase M1S55_17200 PF00694 Aconitase C-terminal domain M1S55_17205 PF00330 Aconitase family (aconitate hydratase) M1S55_17215 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M1S55_17215 PF03466 LysR substrate binding domain M1S55_17235 PF00293 NUDIX domain M1S55_17240 PF01590 GAF domain M1S55_17240 PF05524 PEP-utilising enzyme, N-terminal M1S55_17240 PF00391 PEP-utilising enzyme, mobile domain M1S55_17240 PF02896 PEP-utilising enzyme, TIM barrel domain M1S55_17245 PF00141 Peroxidase M1S55_17250 PF12706 Beta-lactamase superfamily domain M1S55_17265 PF02798 Glutathione S-transferase, N-terminal domain M1S55_17270 PF13280 WYL domain M1S55_17270 PF08279 HTH domain M1S55_17275 PF13419 Haloacid dehalogenase-like hydrolase M1S55_17280 PF00849 RNA pseudouridylate synthase M1S55_17280 PF01479 S4 domain M1S55_17285 PF12111 Polyribonucleotide phosphorylase C terminal M1S55_17285 PF10150 Ribonuclease E/G family M1S55_17285 PF00575 S1 RNA binding domain M1S55_17290 PF00501 AMP-binding enzyme M1S55_17290 PF13193 AMP-binding enzyme C-terminal domain M1S55_17305 PF03466 LysR substrate binding domain M1S55_17305 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M1S55_17310 PF00106 short chain dehydrogenase M1S55_17315 PF06969 HemN C-terminal domain M1S55_17315 PF04055 Radical SAM superfamily M1S55_17325 PF01554 MatE M1S55_17330 PF08028 Acyl-CoA dehydrogenase, C-terminal domain M1S55_17330 PF02770 Acyl-CoA dehydrogenase, middle domain M1S55_17330 PF02771 Acyl-CoA dehydrogenase, N-terminal domain M1S55_17335 PF08028 Acyl-CoA dehydrogenase, C-terminal domain M1S55_17335 PF02771 Acyl-CoA dehydrogenase, N-terminal domain M1S55_17340 PF03109 ABC1 family M1S55_17345 PF01197 Ribosomal protein L31 M1S55_17360 PF02537 CrcB-like protein, Camphor Resistance (CrcB) M1S55_17380 PF03884 DNA gyrase inhibitor YacG M1S55_17390 PF00762 Ferrochelatase M1S55_17400 PF01177 Asp/Glu/Hydantoin racemase M1S55_17415 PF01206 Sulfurtransferase TusA M1S55_17420 PF03471 Transporter associated domain M1S55_17420 PF00571 CBS domain M1S55_17425 PF00795 Carbon-nitrogen hydrolase M1S55_17430 PF01588 Putative tRNA binding domain M1S55_17440 PF08334 Type II secretion system (T2SS), protein G M1S55_17440 PF07963 Prokaryotic N-terminal methylation motif M1S55_17445 PF00482 Type II secretion system (T2SS), protein F M1S55_17450 PF18319 PriA DNA helicase Cys-rich region (CRR) domain M1S55_17450 PF00270 DEAD/DEAH box helicase M1S55_17450 PF00271 Helicase conserved C-terminal domain M1S55_17450 PF17764 3′ DNA-binding domain (3′BD) M1S55_17450 PF18074 Primosomal protein N C-terminal domain M1S55_17455 PF02254 TrkA-N domain M1S55_17455 PF00999 Sodium/hydrogen exchanger family M1S55_17460 PF01430 Hsp33 protein M1S55_17470 PF01556 DnaJ C terminal domain M1S55_17470 PF00226 DnaJ domain M1S55_17480 PF01544 CorA-like Mg2+ transporter protein M1S55_17485 PF00013 KH domain M1S55_17485 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain M1S55_17485 PF01138 3' exoribonuclease family, domain 1 M1S55_17485 PF03725 3' exoribonuclease family, domain 2 M1S55_17485 PF00575 S1 RNA binding domain M1S55_17490 PF00312 Ribosomal protein S15 M1S55_17495 PF00144 Beta-lactamase M1S55_17500 PF13538 UvrD-like helicase C-terminal domain M1S55_17505 PF12705 PD-(D/E)XK nuclease superfamily M1S55_17505 PF00580 UvrD/REP helicase N-terminal domain M1S55_17505 PF13361 UvrD-like helicase C-terminal domain M1S55_17510 PF17946 RecC C-terminal domain M1S55_17520 PF03976 Polyphosphate kinase 2 (PPK2) M1S55_17530 PF01209 ubiE/COQ5 methyltransferase family M1S55_17550 PF01502 Phosphoribosyl-AMP cyclohydrolase M1S55_17565 PF13244 Domain of unknown function (DUF4040) M1S55_17565 PF04039 Domain related to MnhB subunit of Na+/H+ antiporter M1S55_17565 PF00361 Proton-conducting membrane transporter M1S55_17565 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus M1S55_17570 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L M1S55_17575 PF00361 Proton-conducting membrane transporter M1S55_17580 PF01899 Na+/H+ ion antiporter subunit M1S55_17585 PF04066 Multiple resistance and pH regulation protein F (MrpF / PhaF) M1S55_17590 PF03334 Na+/H+ antiporter subunit M1S55_17595 PF02033 Ribosome-binding factor A M1S55_17600 PF00009 Elongation factor Tu GTP binding domain M1S55_17600 PF04760 Translation initiation factor IF-2, N-terminal region M1S55_17600 PF08364 Bacterial translation initiation factor IF-2 associated region M1S55_17600 PF11987 Translation-initiation factor 2 M1S55_17605 PF13184 NusA-like KH domain M1S55_17605 PF08529 NusA N-terminal domain M1S55_17605 PF00575 S1 RNA binding domain M1S55_17610 PF17384 RimP C-terminal SH3 domain M1S55_17610 PF02576 RimP N-terminal domain M1S55_17630 PF03840 Preprotein translocase SecG subunit M1S55_17635 PF00121 Triosephosphate isomerase M1S55_17640 PF00437 Type II/IV secretion system protein M1S55_17640 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain M1S55_17645 PF00482 Type II secretion system (T2SS), protein F M1S55_17655 PF06750 Bacterial Peptidase A24 N-terminal domain M1S55_17655 PF01478 Type IV leader peptidase family M1S55_17660 PF01121 Dephospho-CoA kinase M1S55_17670 PF00588 SpoU rRNA Methylase family M1S55_17670 PF08032 RNA 2'-O ribose methyltransferase substrate binding M1S55_17675 PF06865 Pyrimidine/purine nucleoside phosphorylase M1S55_17685 PF02463 RecF/RecN/SMC N terminal domain M1S55_17690 PF02622 Uncharacterized ACR, COG1678 M1S55_17695 PF03652 Holliday junction resolvase M1S55_17700 PF13533 Biotin-lipoyl like M1S55_17725 PF12833 Helix-turn-helix domain M1S55_17725 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain M1S55_17725 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain M1S55_17725 PF02805 Metal binding domain of Ada M1S55_17730 PF01066 CDP-alcohol phosphatidyltransferase M1S55_17740 PF01541 GIY-YIG catalytic domain M1S55_17740 PF02151 UvrB/uvrC motif M1S55_17740 PF08459 UvrC Helix-hairpin-helix N-terminal M1S55_17760 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain M1S55_17760 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain M1S55_17760 PF00378 Enoyl-CoA hydratase/isomerase M1S55_17765 PF02803 Thiolase, C-terminal domain M1S55_17765 PF00108 Thiolase, N-terminal domain M1S55_17795 PF00376 MerR family regulatory protein M1S55_17795 PF09278 MerR, DNA binding M1S55_17805 PF01323 DSBA-like thioredoxin domain M1S55_17820 PF00183 Hsp90 protein M1S55_17820 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M1S55_17835 PF13726 Na+-H+ antiporter family M1S55_17835 PF03553 Na+/H+ antiporter family M1S55_17840 PF00561 alpha/beta hydrolase fold M1S55_17860 PF04983 RNA polymerase Rpb1, domain 3 M1S55_17860 PF00623 RNA polymerase Rpb1, domain 2 M1S55_17860 PF05000 RNA polymerase Rpb1, domain 4 M1S55_17860 PF04998 RNA polymerase Rpb1, domain 5 M1S55_17860 PF04997 RNA polymerase Rpb1, domain 1 M1S55_17865 PF04563 RNA polymerase beta subunit M1S55_17865 PF04561 RNA polymerase Rpb2, domain 2 M1S55_17865 PF04565 RNA polymerase Rpb2, domain 3 M1S55_17865 PF00562 RNA polymerase Rpb2, domain 6 M1S55_17865 PF04560 RNA polymerase Rpb2, domain 7 M1S55_17865 PF10385 RNA polymerase beta subunit external 1 domain M1S55_17870 PF00542 Ribosomal protein L7/L12 C-terminal domain M1S55_17870 PF16320 Ribosomal protein L7/L12 dimerisation domain M1S55_17875 PF00466 Ribosomal protein L10 M1S55_17880 PF00687 Ribosomal protein L1p/L10e family M1S55_17885 PF00298 Ribosomal protein L11, RNA binding domain M1S55_17885 PF03946 Ribosomal protein L11, N-terminal domain M1S55_17890 PF00467 KOW motif M1S55_17890 PF02357 Transcription termination factor nusG M1S55_17895 PF00584 SecE/Sec61-gamma subunits of protein translocation complex M1S55_17905 PF03143 Elongation factor Tu C-terminal domain M1S55_17905 PF03144 Elongation factor Tu domain 2 M1S55_17905 PF00009 Elongation factor Tu GTP binding domain M1S55_17930 PF04715 Anthranilate synthase component I, N terminal region M1S55_17930 PF00425 chorismate binding enzyme M1S55_17935 PF13419 Haloacid dehalogenase-like hydrolase M1S55_17940 PF12401 Protein of unknown function (DUF2662) M1S55_17940 PF00498 FHA domain M1S55_17945 PF00263 Bacterial type II and III secretion system protein M1S55_17945 PF03958 Bacterial type II/III secretion system short domain M1S55_17960 PF00816 H-NS histone family M1S55_17985 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain M1S55_17985 PF03900 Porphobilinogen deaminase, C-terminal domain M1S55_17990 PF00072 Response regulator receiver domain M1S55_17990 PF04397 LytTr DNA-binding domain M1S55_17995 PF06580 Histidine kinase M1S55_17995 PF07694 5TMR of 5TMR-LYT M1S55_17995 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M1S55_18000 PF00206 Lyase M1S55_18000 PF14698 Argininosuccinate lyase C-terminal M1S55_18005 PF04362 Bacterial Fe(2+) trafficking M1S55_18010 PF01895 PhoU domain M1S55_18015 PF02321 Outer membrane efflux protein M1S55_18020 PF00892 EamA-like transporter family M1S55_18035 PF13667 ThiC-associated domain M1S55_18035 PF01964 Radical SAM ThiC family M1S55_18040 PF00293 NUDIX domain M1S55_18045 PF00149 Calcineurin-like phosphoesterase M1S55_18050 PF01258 Prokaryotic dksA/traR C4-type zinc finger M1S55_18055 PF00749 tRNA synthetases class I (E and Q), catalytic domain M1S55_18060 PF01098 Cell cycle protein M1S55_18065 PF08245 Mur ligase middle domain M1S55_18065 PF02875 Mur ligase family, glutamate ligase domain M1S55_18075 PF07664 Ferrous iron transport protein B C terminus M1S55_18075 PF02421 Ferrous iron transport protein B M1S55_18075 PF07670 Nucleoside recognition M1S55_18085 PF02899 Phage integrase, N-terminal SAM-like domain M1S55_18085 PF00589 Phage integrase family M1S55_18090 PF10411 Disulfide bond isomerase protein N-terminus M1S55_18090 PF13098 Thioredoxin-like domain M1S55_18095 PF01842 ACT domain M1S55_18095 PF00742 Homoserine dehydrogenase M1S55_18095 PF03447 Homoserine dehydrogenase, NAD binding domain M1S55_18100 PF00291 Pyridoxal-phosphate dependent enzyme M1S55_18105 PF00768 D-alanyl-D-alanine carboxypeptidase M1S55_18110 PF00072 Response regulator receiver domain M1S55_18110 PF00196 Bacterial regulatory proteins, luxR family M1S55_18115 PF00512 His Kinase A (phospho-acceptor) domain M1S55_18115 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M1S55_18120 PF02954 Bacterial regulatory protein, Fis family M1S55_18120 PF00072 Response regulator receiver domain M1S55_18120 PF00158 Sigma-54 interaction domain M1S55_18125 PF00595 PDZ domain M1S55_18125 PF03572 Peptidase family S41 M1S55_18130 PF06415 BPG-independent PGAM N-terminus (iPGM_N) M1S55_18130 PF01676 Metalloenzyme superfamily M1S55_18135 PF03739 Lipopolysaccharide export system permease LptF/LptG M1S55_18145 PF00883 Cytosol aminopeptidase family, catalytic domain M1S55_18145 PF02789 Cytosol aminopeptidase family, N-terminal domain M1S55_18165 PF00677 Lumazine binding domain M1S55_18175 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region M1S55_18175 PF01872 RibD C-terminal domain M1S55_18180 PF03477 ATP cone domain M1S55_18185 PF00909 Ammonium Transporter Family M1S55_18190 PF00543 Nitrogen regulatory protein P-II M1S55_18210 PF01636 Phosphotransferase enzyme family M1S55_18215 PF04655 Aminoglycoside/hydroxyurea antibiotic resistance kinase M1S55_18235 PF00440 Bacterial regulatory proteins, tetR family M1S55_18235 PF02909 Tetracyclin repressor-like, C-terminal domain M1S55_18240 PF07690 Major Facilitator Superfamily M1S55_18250 PF01740 STAS domain M1S55_18250 PF00916 Sulfate permease family M1S55_18255 PF00582 Universal stress protein family M1S55_18285 PF00665 Integrase core domain M1S55_18295 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III M1S55_18295 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain M1S55_18295 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I M1S55_18295 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II M1S55_18300 PF00809 Pterin binding enzyme M1S55_18315 PF00665 Integrase core domain M1S55_18340 PF02899 Phage integrase, N-terminal SAM-like domain M1S55_18340 PF00589 Phage integrase family M1S55_18370 PF00916 Sulfate permease family M1S55_18370 PF01740 STAS domain M1S55_18375 PF00582 Universal stress protein family M1S55_18410 PF00155 Aminotransferase class I and II M1S55_18410 PF00392 Bacterial regulatory proteins, gntR family M1S55_18420 PF00701 Dihydrodipicolinate synthetase family M1S55_18435 PF03573 outer membrane porin, OprD family M1S55_18440 PF00719 Inorganic pyrophosphatase M1S55_18460 PF00521 DNA gyrase/topoisomerase IV, subunit A M1S55_18460 PF03989 DNA gyrase C-terminal domain, beta-propeller M1S55_18465 PF07690 Major Facilitator Superfamily M1S55_18470 PF03458 UPF0126 domain M1S55_18475 PF02810 SEC-C motif M1S55_18480 PF03471 Transporter associated domain M1S55_18480 PF03741 Integral membrane protein TerC family M1S55_18485 PF03641 Possible lysine decarboxylase M1S55_18490 PF07690 Major Facilitator Superfamily M1S55_18500 PF00817 impB/mucB/samB family M1S55_18500 PF11799 impB/mucB/samB family C-terminal domain M1S55_18500 PF11798 IMS family HHH motif M1S55_18520 PF08497 Radical SAM N-terminal M1S55_18520 PF04055 Radical SAM superfamily M1S55_18520 PF11842 Domain of unknown function (DUF3362) M1S55_18540 PF03358 NADPH-dependent FMN reductase M1S55_18550 PF00291 Pyridoxal-phosphate dependent enzyme M1S55_18610 PF01327 Polypeptide deformylase M1S55_18620 PF02481 DNA recombination-mediator protein A M1S55_18620 PF17782 DprA winged helix domain M1S55_18625 PF01300 Telomere recombination M1S55_18630 PF00892 EamA-like transporter family M1S55_18635 PF00440 Bacterial regulatory proteins, tetR family M1S55_18640 PF07690 Major Facilitator Superfamily M1S55_18650 PF00255 Glutathione peroxidase M1S55_18660 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain M1S55_18665 PF02874 ATP synthase alpha/beta family, beta-barrel domain M1S55_18665 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain M1S55_18670 PF00231 ATP synthase M1S55_18675 PF00306 ATP synthase alpha/beta chain, C terminal domain M1S55_18675 PF02874 ATP synthase alpha/beta family, beta-barrel domain M1S55_18675 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain M1S55_18680 PF00213 ATP synthase delta (OSCP) subunit M1S55_18685 PF00430 ATP synthase B/B' CF(0) M1S55_18690 PF00137 ATP synthase subunit C M1S55_18695 PF00119 ATP synthase A chain M1S55_18715 PF00005 ABC transporter M1S55_18720 PF00950 ABC 3 transport family M1S55_18725 PF01810 LysE type translocator M1S55_18730 PF04261 Dyp-type peroxidase family M1S55_18740 PF00390 Malic enzyme, N-terminal domain M1S55_18740 PF03949 Malic enzyme, NAD binding domain M1S55_18745 PF03485 Arginyl tRNA synthetase N terminal domain M1S55_18745 PF05746 DALR anticodon binding domain M1S55_18745 PF00750 tRNA synthetases class I (R) M1S55_18765 PF02678 Pirin M1S55_18765 PF05726 Pirin C-terminal cupin domain M1S55_18775 PF03551 Transcriptional regulator PadR-like family M1S55_18780 PF13427 Domain of unknown function (DUF4111) M1S55_18780 PF01909 Nucleotidyltransferase domain M1S55_18785 PF00117 Glutamine amidotransferase class-I M1S55_18785 PF00958 GMP synthase C terminal domain M1S55_18785 PF02540 NAD synthase M1S55_18790 PF04286 Protein of unknown function (DUF445) M1S55_18795 PF07681 DoxX M1S55_18800 PF09335 SNARE associated Golgi protein M1S55_18815 PF13614 AAA domain M1S55_18825 PF01722 BolA-like protein M1S55_18840 PF01648 4'-phosphopantetheinyl transferase superfamily M1S55_18845 PF12697 Alpha/beta hydrolase family M1S55_18865 PF16197 Ketoacyl-synthetase C-terminal extension M1S55_18865 PF02801 Beta-ketoacyl synthase, C-terminal domain M1S55_18865 PF00109 Beta-ketoacyl synthase, N-terminal domain M1S55_18865 PF00975 Thioesterase domain M1S55_18865 PF00550 Phosphopantetheine attachment site M1S55_18865 PF14765 Polyketide synthase dehydratase M1S55_18865 PF08242 Methyltransferase domain M1S55_18870 PF02771 Acyl-CoA dehydrogenase, N-terminal domain M1S55_18870 PF02770 Acyl-CoA dehydrogenase, middle domain M1S55_18870 PF00441 Acyl-CoA dehydrogenase, C-terminal domain M1S55_18875 PF00501 AMP-binding enzyme M1S55_18880 PF03472 Autoinducer binding domain M1S55_18880 PF00196 Bacterial regulatory proteins, luxR family M1S55_18890 PF00765 Autoinducer synthase M1S55_18895 PF00083 Sugar (and other) transporter M1S55_18895 PF07690 Major Facilitator Superfamily M1S55_18900 PF00378 Enoyl-CoA hydratase/isomerase M1S55_18905 PF00378 Enoyl-CoA hydratase/isomerase M1S55_18910 PF02771 Acyl-CoA dehydrogenase, N-terminal domain M1S55_18910 PF00441 Acyl-CoA dehydrogenase, C-terminal domain M1S55_18910 PF02770 Acyl-CoA dehydrogenase, middle domain M1S55_18915 PF00501 AMP-binding enzyme M1S55_18915 PF13193 AMP-binding enzyme C-terminal domain M1S55_18920 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase M1S55_18920 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase M1S55_18925 PF00171 Aldehyde dehydrogenase family M1S55_18935 PF00324 Amino acid permease M1S55_18940 PF00324 Amino acid permease M1S55_18945 PF01042 Endoribonuclease L-PSP M1S55_18950 PF00842 Alanine racemase, C-terminal domain M1S55_18950 PF01168 Alanine racemase, N-terminal domain M1S55_18955 PF01266 FAD dependent oxidoreductase M1S55_18960 PF01037 Lrp/AsnC ligand binding domain M1S55_18970 PF00593 TonB dependent receptor M1S55_18970 PF07715 TonB-dependent Receptor Plug Domain M1S55_18985 PF00849 RNA pseudouridylate synthase M1S55_19000 PF00440 Bacterial regulatory proteins, tetR family M1S55_19000 PF08361 MAATS-type transcriptional repressor, C-terminal region M1S55_19010 PF00109 Beta-ketoacyl synthase, N-terminal domain M1S55_19010 PF02801 Beta-ketoacyl synthase, C-terminal domain M1S55_19045 PF00694 Aconitase C-terminal domain M1S55_19045 PF00330 Aconitase family (aconitate hydratase) M1S55_19050 PF00285 Citrate synthase, C-terminal domain M1S55_19060 PF00392 Bacterial regulatory proteins, gntR family M1S55_19060 PF07729 FCD domain M1S55_19070 PF00155 Aminotransferase class I and II M1S55_19075 PF09330 D-lactate dehydrogenase, membrane binding M1S55_19075 PF01565 FAD binding domain M1S55_19080 PF01070 FMN-dependent dehydrogenase M1S55_19085 PF00392 Bacterial regulatory proteins, gntR family M1S55_19085 PF07729 FCD domain M1S55_19090 PF02652 L-lactate permease M1S55_19100 PF16363 GDP-mannose 4,6 dehydratase M1S55_19105 PF00342 Phosphoglucose isomerase M1S55_19120 PF02397 Bacterial sugar transferase M1S55_19125 PF00535 Glycosyl transferase family 2 M1S55_19155 PF08666 SAF domain M1S55_19155 PF03102 NeuB family M1S55_19170 PF02348 Cytidylyltransferase M1S55_19175 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family M1S55_19180 PF02719 Polysaccharide biosynthesis protein M1S55_19185 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain M1S55_19185 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain M1S55_19185 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain M1S55_19190 PF18412 Outer-membrane lipoprotein Wza C-terminal domain M1S55_19190 PF10531 SLBB domain M1S55_19190 PF02563 Polysaccharide biosynthesis/export protein M1S55_19195 PF01451 Low molecular weight phosphotyrosine protein phosphatase M1S55_19200 PF13614 AAA domain M1S55_19200 PF02706 Chain length determinant protein M1S55_19200 PF13807 G-rich domain on putative tyrosine kinase M1S55_19205 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase M1S55_19205 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase M1S55_19210 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase M1S55_19210 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase M1S55_19215 PF03023 Lipid II flippase MurJ M1S55_19220 PF01510 N-acetylmuramoyl-L-alanine amidase M1S55_19235 PF04185 Phosphoesterase family M1S55_19235 PF05506 Domain of unknown function (DUF756) M1S55_19245 PF03725 3' exoribonuclease family, domain 2 M1S55_19245 PF01138 3' exoribonuclease family, domain 1 M1S55_19250 PF00487 Fatty acid desaturase M1S55_19255 PF00175 Oxidoreductase NAD-binding domain M1S55_19260 PF00440 Bacterial regulatory proteins, tetR family M1S55_19265 PF00440 Bacterial regulatory proteins, tetR family M1S55_19265 PF08360 QacR-like protein, C-terminal region M1S55_19270 PF01323 DSBA-like thioredoxin domain M1S55_19280 PF13419 Haloacid dehalogenase-like hydrolase M1S55_19285 PF00106 short chain dehydrogenase M1S55_19305 PF09084 NMT1/THI5 like M1S55_19310 PF09084 NMT1/THI5 like M1S55_19315 PF00296 Luciferase-like monooxygenase M1S55_19320 PF00528 Binding-protein-dependent transport system inner membrane component M1S55_19325 PF00005 ABC transporter M1S55_19330 PF08362 YcdC-like protein, C-terminal region M1S55_19330 PF00440 Bacterial regulatory proteins, tetR family M1S55_19335 PF01048 Phosphorylase superfamily M1S55_19345 PF06574 FAD synthetase M1S55_19345 PF01687 Riboflavin kinase M1S55_19350 PF00133 tRNA synthetases class I (I, L, M and V) M1S55_19350 PF06827 Zinc finger found in FPG and IleRS M1S55_19350 PF08264 Anticodon-binding domain of tRNA M1S55_19355 PF01252 Signal peptidase (SPase) II M1S55_19360 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase M1S55_19400 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD M1S55_19405 PF07859 alpha/beta hydrolase fold M1S55_19425 PF03466 LysR substrate binding domain M1S55_19425 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M1S55_19430 PF01025 GrpE M1S55_19435 PF00012 Hsp70 protein M1S55_19455 PF13406 Transglycosylase SLT domain M1S55_19460 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain M1S55_19460 PF02222 ATP-grasp domain M1S55_19465 PF00731 AIR carboxylase M1S55_19485 PF01569 PAP2 superfamily M1S55_19490 PF03741 Integral membrane protein TerC family M1S55_19500 PF03738 Glutathionylspermidine synthase preATP-grasp M1S55_19505 PF00355 Rieske [2Fe-2S] domain M1S55_19510 PF01979 Amidohydrolase family M1S55_19515 PF00156 Phosphoribosyl transferase domain M1S55_19525 PF10411 Disulfide bond isomerase protein N-terminus M1S55_19525 PF13098 Thioredoxin-like domain M1S55_19530 PF01545 Cation efflux family M1S55_19530 PF16916 Dimerisation domain of Zinc Transporter M1S55_19535 PF02583 Metal-sensitive transcriptional repressor M1S55_19540 PF01926 50S ribosome-binding GTPase M1S55_19540 PF12631 MnmE helical domain M1S55_19540 PF10396 GTP-binding protein TrmE N-terminus M1S55_19550 PF01809 Putative membrane protein insertion efficiency factor M1S55_19555 PF00825 Ribonuclease P M1S55_19560 PF00468 Ribosomal protein L34 M1S55_19585 PF10410 DnaB-helicase binding domain of primase M1S55_19585 PF08275 DNA primase catalytic core, N-terminal domain M1S55_19585 PF01807 CHC2 zinc finger M1S55_19615 PF00625 Guanylate kinase M1S55_19630 PF07015 VirC1 protein M1S55_19640 PF00589 Phage integrase family M1S55_19640 PF02899 Phage integrase, N-terminal SAM-like domain M1S55_19675 PF14579 Helix-hairpin-helix motif M1S55_19675 PF02811 PHP domain M1S55_19675 PF17657 Bacterial DNA polymerase III alpha subunit finger domain M1S55_19675 PF07733 Bacterial DNA polymerase III alpha NTPase domain M1S55_19685 PF02811 PHP domain M1S55_19685 PF07733 Bacterial DNA polymerase III alpha NTPase domain M1S55_19685 PF17657 Bacterial DNA polymerase III alpha subunit finger domain M1S55_19685 PF14579 Helix-hairpin-helix motif M1S55_19700 PF01612 3'-5' exonuclease M1S55_19700 PF00476 DNA polymerase family A M1S55_19700 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain M1S55_19700 PF01367 5'-3' exonuclease, C-terminal SAM fold M1S55_19705 PF00154 recA bacterial DNA recombination protein M1S55_19705 PF03161 LAGLIDADG DNA endonuclease family M1S55_19730 PF02463 RecF/RecN/SMC N terminal domain M1S55_19730 PF06470 SMC proteins Flexible Hinge Domain M1S55_19750 PF02867 Ribonucleotide reductase, barrel domain M1S55_19750 PF00317 Ribonucleotide reductase, all-alpha domain M1S55_19750 PF03477 ATP cone domain M1S55_19755 PF00268 Ribonucleotide reductase, small chain M1S55_19795 PF00929 Exonuclease M1S55_19830 PF13737 Transposase DDE domain M1S55_19840 PF16925 Tetracyclin repressor-like, C-terminal domain M1S55_19840 PF00440 Bacterial regulatory proteins, tetR family M1S55_19850 PF00724 NADH:flavin oxidoreductase / NADH oxidase family M1S55_19860 PF00465 Iron-containing alcohol dehydrogenase M1S55_19875 PF00756 Putative esterase M1S55_19880 PF00107 Zinc-binding dehydrogenase M1S55_19880 PF08240 Alcohol dehydrogenase GroES-like domain M1S55_19885 PF02583 Metal-sensitive transcriptional repressor M1S55_19900 PF00107 Zinc-binding dehydrogenase M1S55_19900 PF08240 Alcohol dehydrogenase GroES-like domain M1S55_19900 PF13823 Alcohol dehydrogenase GroES-associated M1S55_19965 PF02216 B domain M1S55_19965 PF00746 LPXTG cell wall anchor motif M1S55_19965 PF01476 LysM domain M1S55_19965 PF03373 Octapeptide repeat M1S55_19965 PF04650 YSIRK type signal peptide M1S55_19980 PF02559 CarD-like/TRCF domain M1S55_19980 PF00270 DEAD/DEAH box helicase M1S55_19980 PF00271 Helicase conserved C-terminal domain M1S55_19980 PF03461 TRCF domain M1S55_19980 PF17757 UvrB interaction domain M1S55_20000 PF00005 ABC transporter M1S55_20000 PF09383 NIL domain