locus-tag class description M1S42_00005 PF00308 Bacterial dnaA protein M1S42_00005 PF08299 Bacterial dnaA protein helix-turn-helix M1S42_00005 PF11638 DnaA N-terminal domain M1S42_00010 PF00712 DNA polymerase III beta subunit, N-terminal domain M1S42_00010 PF02767 DNA polymerase III beta subunit, central domain M1S42_00010 PF02768 DNA polymerase III beta subunit, C-terminal domain M1S42_00015 PF02463 RecF/RecN/SMC N terminal domain M1S42_00020 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M1S42_00020 PF18053 DNA gyrase B subunit insert domain M1S42_00020 PF01751 Toprim domain M1S42_00020 PF00204 DNA gyrase B M1S42_00020 PF00986 DNA gyrase B subunit, carboxyl terminus M1S42_00030 PF09335 SNARE associated Golgi protein M1S42_00035 PF00005 ABC transporter M1S42_00035 PF12848 ABC transporter M1S42_00055 PF01521 Iron-sulphur cluster biosynthesis M1S42_00060 PF00561 alpha/beta hydrolase fold M1S42_00065 PF03702 Anhydro-N-acetylmuramic acid kinase M1S42_00070 PF00579 tRNA synthetases class I (W and Y) M1S42_00110 PF00209 Sodium:neurotransmitter symporter family M1S42_00120 PF01029 NusB family M1S42_00120 PF01189 16S rRNA methyltransferase RsmB/F M1S42_00125 PF00551 Formyl transferase M1S42_00125 PF02911 Formyl transferase, C-terminal domain M1S42_00130 PF00920 Dehydratase family M1S42_00145 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M1S42_00145 PF03466 LysR substrate binding domain M1S42_00150 PF00860 Permease family M1S42_00155 PF00311 Phosphoenolpyruvate carboxylase M1S42_00160 PF08361 MAATS-type transcriptional repressor, C-terminal region M1S42_00160 PF00440 Bacterial regulatory proteins, tetR family M1S42_00165 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion M1S42_00170 PF00873 AcrB/AcrD/AcrF family M1S42_00180 PF00684 DnaJ central domain M1S42_00180 PF00226 DnaJ domain M1S42_00180 PF01556 DnaJ C terminal domain M1S42_00190 PF01113 Dihydrodipicolinate reductase, N-terminus M1S42_00190 PF05173 Dihydrodipicolinate reductase, C-terminus M1S42_00200 PF07690 Major Facilitator Superfamily M1S42_00205 PF00248 Aldo/keto reductase family M1S42_00210 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M1S42_00210 PF03466 LysR substrate binding domain M1S42_00225 PF00392 Bacterial regulatory proteins, gntR family M1S42_00225 PF00155 Aminotransferase class I and II M1S42_00230 PF00107 Zinc-binding dehydrogenase M1S42_00230 PF08240 Alcohol dehydrogenase GroES-like domain M1S42_00235 PF03352 Methyladenine glycosylase M1S42_00250 PF10576 Iron-sulfur binding domain of endonuclease III M1S42_00250 PF00633 Helix-hairpin-helix motif M1S42_00250 PF00730 HhH-GPD superfamily base excision DNA repair protein M1S42_00250 PF14815 NUDIX domain M1S42_00265 PF07043 Protein of unknown function (DUF1328) M1S42_00270 PF03692 Putative zinc- or iron-chelating domain M1S42_00275 PF07995 Glucose / Sorbosone dehydrogenase M1S42_00280 PF12002 MgsA AAA+ ATPase C terminal M1S42_00280 PF16193 AAA C-terminal domain M1S42_00280 PF00004 ATPase family associated with various cellular activities (AAA) M1S42_00285 PF01226 Formate/nitrite transporter M1S42_00295 PF01259 SAICAR synthetase M1S42_00305 PF00701 Dihydrodipicolinate synthetase family M1S42_00310 PF00857 Isochorismatase family M1S42_00315 PF01758 Sodium Bile acid symporter family M1S42_00320 PF01554 MatE M1S42_00325 PF04463 Protein of unknown function (DUF523) M1S42_00330 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily M1S42_00340 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily M1S42_00345 PF14497 Glutathione S-transferase, C-terminal domain M1S42_00345 PF02798 Glutathione S-transferase, N-terminal domain M1S42_00355 PF00324 Amino acid permease M1S42_00365 PF02492 CobW/HypB/UreG, nucleotide-binding domain M1S42_00365 PF07683 Cobalamin synthesis protein cobW C-terminal domain M1S42_00375 PF00392 Bacterial regulatory proteins, gntR family M1S42_00375 PF07702 UTRA domain M1S42_00380 PF05962 HutD M1S42_00385 PF17392 Urocanase C-terminal domain M1S42_00385 PF17391 Urocanase N-terminal domain M1S42_00385 PF01175 Urocanase Rossmann-like domain M1S42_00390 PF00221 Aromatic amino acid lyase M1S42_00395 PF00324 Amino acid permease M1S42_00400 PF01979 Amidohydrolase family M1S42_00405 PF00491 Arginase family M1S42_00420 PF01177 Asp/Glu/Hydantoin racemase M1S42_00425 PF01380 SIS domain M1S42_00430 PF14602 Hexapeptide repeat of succinyl-transferase M1S42_00430 PF00132 Bacterial transferase hexapeptide (six repeats) M1S42_00430 PF12804 MobA-like NTP transferase domain M1S42_00435 PF04608 Phosphatidylglycerophosphatase A M1S42_00440 PF02769 AIR synthase related protein, C-terminal domain M1S42_00440 PF00586 AIR synthase related protein, N-terminal domain M1S42_00445 PF01029 NusB family M1S42_00450 PF00885 6,7-dimethyl-8-ribityllumazine synthase M1S42_00455 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase M1S42_00455 PF00925 GTP cyclohydrolase II M1S42_00480 PF02580 D-Tyr-tRNA(Tyr) deacylase M1S42_00485 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family M1S42_00485 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain M1S42_00490 PF00581 Rhodanese-like domain M1S42_00495 PF02666 Phosphatidylserine decarboxylase M1S42_00500 PF03069 Acetamidase/Formamidase family M1S42_00520 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M1S42_00520 PF00512 His Kinase A (phospho-acceptor) domain M1S42_00520 PF00989 PAS fold M1S42_00520 PF11808 Phosphate regulon sensor protein PhoR M1S42_00525 PF00072 Response regulator receiver domain M1S42_00525 PF00486 Transcriptional regulatory protein, C terminal M1S42_00535 PF00106 short chain dehydrogenase M1S42_00540 PF01554 MatE M1S42_00545 PF00155 Aminotransferase class I and II M1S42_00550 PF04286 Protein of unknown function (DUF445) M1S42_00565 PF04262 Glutamate-cysteine ligase M1S42_00570 PF02600 Disulfide bond formation protein DsbB M1S42_00575 PF10106 Uncharacterized protein conserved in bacteria (DUF2345) M1S42_00575 PF04717 Type VI secretion system, phage-baseplate injector M1S42_00575 PF13296 Putative type VI secretion system Rhs element Vgr M1S42_00580 PF00877 NlpC/P60 family M1S42_00580 PF01476 LysM domain M1S42_00595 PF05728 Uncharacterised protein family (UPF0227) M1S42_00600 PF01751 Toprim domain M1S42_00600 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M1S42_00600 PF00986 DNA gyrase B subunit, carboxyl terminus M1S42_00600 PF00204 DNA gyrase B M1S42_00605 PF00106 short chain dehydrogenase M1S42_00610 PF04115 Ureidoglycolate lyase M1S42_00615 PF03561 Allantoicase repeat M1S42_00620 PF01494 FAD binding domain M1S42_00630 PF00860 Permease family M1S42_00635 PF00576 HIUase/Transthyretin family M1S42_00665 PF02683 Cytochrome C biogenesis protein transmembrane region M1S42_00665 PF11412 Disulphide bond corrector protein DsbC M1S42_00670 PF00990 Diguanylate cyclase, GGDEF domain M1S42_00670 PF07694 5TMR of 5TMR-LYT M1S42_00675 PF07859 alpha/beta hydrolase fold M1S42_00685 PF03960 ArsC family M1S42_00690 PF03372 Endonuclease/Exonuclease/phosphatase family M1S42_00695 PF00156 Phosphoribosyl transferase domain M1S42_00700 PF00593 TonB dependent receptor M1S42_00700 PF07715 TonB-dependent Receptor Plug Domain M1S42_00710 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain M1S42_00710 PF02951 Prokaryotic glutathione synthetase, N-terminal domain M1S42_00715 PF04101 Glycosyltransferase family 28 C-terminal domain M1S42_00715 PF03033 Glycosyltransferase family 28 N-terminal domain M1S42_00720 PF02875 Mur ligase family, glutamate ligase domain M1S42_00720 PF01225 Mur ligase family, catalytic domain M1S42_00720 PF08245 Mur ligase middle domain M1S42_00725 PF01820 D-ala D-ala ligase N-terminus M1S42_00725 PF07478 D-ala D-ala ligase C-terminus M1S42_00730 PF03799 Cell division protein FtsQ M1S42_00730 PF08478 POTRA domain, FtsQ-type M1S42_00735 PF02491 SHS2 domain inserted in FTSA M1S42_00740 PF12327 FtsZ family, C-terminal domain M1S42_00740 PF00091 Tubulin/FtsZ family, GTPase domain M1S42_00745 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase M1S42_00755 PF01551 Peptidase family M23 M1S42_00760 PF17831 Pyruvate dehydrogenase E1 component middle domain M1S42_00760 PF00456 Transketolase, thiamine diphosphate binding domain M1S42_00765 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) M1S42_00765 PF00364 Biotin-requiring enzyme M1S42_00765 PF02817 e3 binding domain M1S42_00775 PF01169 Uncharacterized protein family UPF0016 M1S42_00780 PF00593 TonB dependent receptor M1S42_00780 PF07715 TonB-dependent Receptor Plug Domain M1S42_00785 PF00258 Flavodoxin M1S42_00785 PF01613 Flavin reductase like domain M1S42_00790 PF03692 Putative zinc- or iron-chelating domain M1S42_00795 PF00478 IMP dehydrogenase / GMP reductase domain M1S42_00795 PF00571 CBS domain M1S42_00800 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain M1S42_00800 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I M1S42_00800 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II M1S42_00800 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III M1S42_00805 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region M1S42_00805 PF01243 Pyridoxamine 5'-phosphate oxidase M1S42_00810 PF01368 DHH family M1S42_00810 PF02272 DHHA1 domain M1S42_00810 PF17768 RecJ OB domain M1S42_00830 PF00724 NADH:flavin oxidoreductase / NADH oxidase family M1S42_00835 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) M1S42_00840 PF04452 RNA methyltransferase M1S42_00845 PF00924 Mechanosensitive ion channel M1S42_00855 PF00501 AMP-binding enzyme M1S42_00855 PF13193 AMP-binding enzyme C-terminal domain M1S42_00855 PF16177 Acetyl-coenzyme A synthetase N-terminus M1S42_00860 PF00857 Isochorismatase family M1S42_00865 PF01037 Lrp/AsnC ligand binding domain M1S42_00870 PF00872 Transposase, Mutator family M1S42_00875 PF00296 Luciferase-like monooxygenase M1S42_00880 PF03358 NADPH-dependent FMN reductase M1S42_00890 PF00072 Response regulator receiver domain M1S42_00890 PF00196 Bacterial regulatory proteins, luxR family M1S42_00900 PF00512 His Kinase A (phospho-acceptor) domain M1S42_00900 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M1S42_00900 PF00672 HAMP domain M1S42_00900 PF01627 Hpt domain M1S42_00900 PF00072 Response regulator receiver domain M1S42_00905 PF04341 Protein of unknown function, DUF485 M1S42_00910 PF00474 Sodium:solute symporter family M1S42_00920 PF02028 BCCT, betaine/carnitine/choline family transporter M1S42_00930 PF00990 Diguanylate cyclase, GGDEF domain M1S42_00940 PF17755 UvrA DNA-binding domain M1S42_00940 PF17760 UvrA interaction domain M1S42_00940 PF00005 ABC transporter M1S42_00945 PF00440 Bacterial regulatory proteins, tetR family M1S42_00945 PF16925 Tetracyclin repressor-like, C-terminal domain M1S42_00950 PF08240 Alcohol dehydrogenase GroES-like domain M1S42_00950 PF00107 Zinc-binding dehydrogenase M1S42_00960 PF06942 GlpM protein M1S42_00965 PF03070 TENA/THI-4/PQQC family M1S42_00965 PF02581 Thiamine monophosphate synthase M1S42_00965 PF08543 Phosphomethylpyrimidine kinase M1S42_00975 PF07690 Major Facilitator Superfamily M1S42_00980 PF00436 Single-strand binding protein family M1S42_00990 PF03591 AzlC protein M1S42_01000 PF00324 Amino acid permease M1S42_01005 PF00155 Aminotransferase class I and II M1S42_01005 PF00392 Bacterial regulatory proteins, gntR family M1S42_01010 PF00202 Aminotransferase class-III M1S42_01015 PF00171 Aldehyde dehydrogenase family M1S42_01020 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M1S42_01025 PF00857 Isochorismatase family M1S42_01030 PF05726 Pirin C-terminal cupin domain M1S42_01030 PF02678 Pirin M1S42_01035 PF01593 Flavin containing amine oxidoreductase M1S42_01055 PF07690 Major Facilitator Superfamily M1S42_01060 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M1S42_01060 PF03466 LysR substrate binding domain M1S42_01080 PF00248 Aldo/keto reductase family M1S42_01085 PF02311 AraC-like ligand binding domain M1S42_01085 PF12833 Helix-turn-helix domain M1S42_01115 PF01638 HxlR-like helix-turn-helix M1S42_01120 PF02525 Flavodoxin-like fold M1S42_01140 PF02705 K+ potassium transporter M1S42_01165 PF00230 Major intrinsic protein M1S42_01180 PF00977 Histidine biosynthesis protein M1S42_01185 PF01636 Phosphotransferase enzyme family M1S42_01200 PF03992 Antibiotic biosynthesis monooxygenase M1S42_01215 PF00977 Histidine biosynthesis protein M1S42_01230 PF00117 Glutamine amidotransferase class-I M1S42_01235 PF00475 Imidazoleglycerol-phosphate dehydratase M1S42_01255 PF00583 Acetyltransferase (GNAT) family M1S42_01260 PF13336 Acetyl-CoA hydrolase/transferase C-terminal domain M1S42_01260 PF02550 Acetyl-CoA hydrolase/transferase N-terminal domain M1S42_01270 PF00512 His Kinase A (phospho-acceptor) domain M1S42_01270 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M1S42_01270 PF00672 HAMP domain M1S42_01275 PF00486 Transcriptional regulatory protein, C terminal M1S42_01275 PF00072 Response regulator receiver domain M1S42_01280 PF09371 Tex-like protein N-terminal domain M1S42_01280 PF16921 Tex protein YqgF-like domain M1S42_01280 PF17674 HHH domain M1S42_01280 PF00575 S1 RNA binding domain M1S42_01285 PF01740 STAS domain M1S42_01285 PF00916 Sulfate permease family M1S42_01290 PF00106 short chain dehydrogenase M1S42_01295 PF01053 Cys/Met metabolism PLP-dependent enzyme M1S42_01300 PF00005 ABC transporter M1S42_01300 PF12848 ABC transporter M1S42_01325 PF04191 Phospholipid methyltransferase M1S42_01345 PF00529 HlyD membrane-fusion protein of T1SS M1S42_01345 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion M1S42_01350 PF00873 AcrB/AcrD/AcrF family M1S42_01355 PF01545 Cation efflux family M1S42_01385 PF00324 Amino acid permease M1S42_01400 PF00749 tRNA synthetases class I (E and Q), catalytic domain M1S42_01415 PF01795 MraW methylase family M1S42_01425 PF00905 Penicillin binding protein transpeptidase domain M1S42_01425 PF03717 Penicillin-binding Protein dimerisation domain M1S42_01430 PF08245 Mur ligase middle domain M1S42_01430 PF02875 Mur ligase family, glutamate ligase domain M1S42_01430 PF01225 Mur ligase family, catalytic domain M1S42_01435 PF08245 Mur ligase middle domain M1S42_01435 PF02875 Mur ligase family, glutamate ligase domain M1S42_01435 PF01225 Mur ligase family, catalytic domain M1S42_01440 PF00953 Glycosyl transferase family 4 M1S42_01450 PF13847 Methyltransferase domain M1S42_01455 PF17092 Penicillin-binding protein OB-like domain M1S42_01455 PF00905 Penicillin binding protein transpeptidase domain M1S42_01455 PF00912 Transglycosylase M1S42_01460 PF11104 Type IV pilus assembly protein PilM; M1S42_01465 PF05137 Fimbrial assembly protein (PilN) M1S42_01470 PF04350 Pilus assembly protein, PilO M1S42_01480 PF11741 AMIN domain M1S42_01480 PF00263 Bacterial type II and III secretion system protein M1S42_01480 PF03958 Bacterial type II/III secretion system short domain M1S42_01480 PF07660 Secretin and TonB N terminus short domain M1S42_01485 PF01202 Shikimate kinase M1S42_01490 PF01761 3-dehydroquinate synthase M1S42_01500 PF00310 Glutamine amidotransferases class-II M1S42_01500 PF04898 Glutamate synthase central domain M1S42_01500 PF01645 Conserved region in glutamate synthase M1S42_01500 PF01493 GXGXG motif M1S42_01505 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster M1S42_01505 PF07992 Pyridine nucleotide-disulphide oxidoreductase M1S42_01515 PF04011 LemA family M1S42_01520 PF04536 TPM domain M1S42_01530 PF00114 Pilin (bacterial filament) M1S42_01530 PF07963 Prokaryotic N-terminal methylation motif M1S42_01540 PF15864 Protein glycosylation ligase M1S42_01540 PF04932 O-Antigen ligase M1S42_01540 PF11846 Virulence factor membrane-bound polymerase, C-terminal M1S42_01550 PF00210 Ferritin-like domain M1S42_01555 PF04324 BFD-like [2Fe-2S] binding domain M1S42_01560 PF01042 Endoribonuclease L-PSP M1S42_01565 PF13291 ACT domain M1S42_01565 PF02824 TGS domain M1S42_01565 PF04607 Region found in RelA / SpoT proteins M1S42_01575 PF01192 RNA polymerase Rpb6 M1S42_01580 PF00625 Guanylate kinase M1S42_01585 PF02401 LytB protein M1S42_01625 PF00886 Ribosomal protein S16 M1S42_01630 PF05239 PRC-barrel domain M1S42_01630 PF01782 RimM N-terminal domain M1S42_01635 PF01746 tRNA (Guanine-1)-methyltransferase M1S42_01640 PF01245 Ribosomal protein L19 M1S42_01645 PF00561 alpha/beta hydrolase fold M1S42_01650 PF03280 Proteobacterial lipase chaperone protein M1S42_01655 PF01509 TruB family pseudouridylate synthase (N terminal domain) M1S42_01655 PF16198 tRNA pseudouridylate synthase B C-terminal domain M1S42_01655 PF09157 Pseudouridine synthase II TruB, C-terminal M1S42_01660 PF01925 Sulfite exporter TauE/SafE M1S42_01670 PF00892 EamA-like transporter family M1S42_01675 PF00892 EamA-like transporter family M1S42_01680 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain M1S42_01680 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain M1S42_01685 PF01565 FAD binding domain M1S42_01685 PF02913 FAD linked oxidases, C-terminal domain M1S42_01695 PF03992 Antibiotic biosynthesis monooxygenase M1S42_01700 PF02525 Flavodoxin-like fold M1S42_01710 PF07690 Major Facilitator Superfamily M1S42_01715 PF12805 FUSC-like inner membrane protein yccS M1S42_01720 PF00080 Copper/zinc superoxide dismutase (SODC) M1S42_01725 PF01594 AI-2E family transporter M1S42_01730 PF13614 AAA domain M1S42_01760 PF00324 Amino acid permease M1S42_01765 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain M1S42_01765 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase M1S42_01770 PF00202 Aminotransferase class-III M1S42_01775 PF04958 Arginine N-succinyltransferase beta subunit M1S42_01780 PF00171 Aldehyde dehydrogenase family M1S42_01785 PF04996 Succinylarginine dihydrolase M1S42_01790 PF04952 Succinylglutamate desuccinylase / Aspartoacylase family M1S42_01805 PF00082 Subtilase family M1S42_01805 PF05922 Peptidase inhibitor I9 M1S42_01820 PF03466 LysR substrate binding domain M1S42_01820 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M1S42_01825 PF00892 EamA-like transporter family M1S42_01835 PF05746 DALR anticodon binding domain M1S42_01835 PF02092 Glycyl-tRNA synthetase beta subunit M1S42_01840 PF02091 Glycyl-tRNA synthetase alpha subunit M1S42_01865 PF00571 CBS domain M1S42_01870 PF04024 PspC domain M1S42_01880 PF02771 Acyl-CoA dehydrogenase, N-terminal domain M1S42_01880 PF12806 Acetyl-CoA dehydrogenase C-terminal like M1S42_01880 PF00441 Acyl-CoA dehydrogenase, C-terminal domain M1S42_01880 PF02770 Acyl-CoA dehydrogenase, middle domain M1S42_01890 PF18317 Shikimate 5'-dehydrogenase C-terminal domain M1S42_01890 PF01488 Shikimate / quinate 5-dehydrogenase M1S42_01890 PF08501 Shikimate dehydrogenase substrate binding domain M1S42_01895 PF01218 Coproporphyrinogen III oxidase M1S42_01900 PF00925 GTP cyclohydrolase II M1S42_01905 PF13292 1-deoxy-D-xylulose-5-phosphate synthase M1S42_01905 PF02779 Transketolase, pyrimidine binding domain M1S42_01905 PF02780 Transketolase, C-terminal domain M1S42_01910 PF00459 Inositol monophosphatase family M1S42_01915 PF03880 DbpA RNA binding domain M1S42_01915 PF12343 Cold shock protein DEAD box A M1S42_01915 PF00271 Helicase conserved C-terminal domain M1S42_01915 PF00270 DEAD/DEAH box helicase M1S42_01925 PF00005 ABC transporter M1S42_01930 PF02405 Permease MlaE M1S42_01940 PF05494 MlaC protein M1S42_01950 PF01544 CorA-like Mg2+ transporter protein M1S42_01955 PF03641 Possible lysine decarboxylase M1S42_01960 PF00293 NUDIX domain M1S42_01965 PF00156 Phosphoribosyl transferase domain M1S42_01970 PF00270 DEAD/DEAH box helicase M1S42_01970 PF00271 Helicase conserved C-terminal domain M1S42_01970 PF17191 RecG wedge domain M1S42_01985 PF01553 Acyltransferase M1S42_01995 PF00375 Sodium:dicarboxylate symporter family M1S42_02005 PF01926 50S ribosome-binding GTPase M1S42_02010 PF02082 Transcriptional regulator M1S42_02015 PF00175 Oxidoreductase NAD-binding domain M1S42_02015 PF00042 Globin M1S42_02015 PF00970 Oxidoreductase FAD-binding domain M1S42_02020 PF05872 Bacterial protein of unknown function (DUF853) M1S42_02025 PF01053 Cys/Met metabolism PLP-dependent enzyme M1S42_02030 PF00117 Glutamine amidotransferase class-I M1S42_02035 PF00338 Ribosomal protein S10p/S20e M1S42_02040 PF00297 Ribosomal protein L3 M1S42_02045 PF00573 Ribosomal protein L4/L1 family M1S42_02050 PF00276 Ribosomal protein L23 M1S42_02055 PF03947 Ribosomal Proteins L2, C-terminal domain M1S42_02055 PF00181 Ribosomal Proteins L2, RNA binding domain M1S42_02060 PF00203 Ribosomal protein S19 M1S42_02065 PF00237 Ribosomal protein L22p/L17e M1S42_02075 PF00252 Ribosomal protein L16p/L10e M1S42_02080 PF00831 Ribosomal L29 protein M1S42_02085 PF00366 Ribosomal protein S17 M1S42_02090 PF00238 Ribosomal protein L14p/L23e M1S42_02095 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 M1S42_02095 PF00467 KOW motif M1S42_02100 PF00281 Ribosomal protein L5 M1S42_02100 PF00673 ribosomal L5P family C-terminus M1S42_02105 PF00253 Ribosomal protein S14p/S29e M1S42_02110 PF00410 Ribosomal protein S8 M1S42_02115 PF00347 Ribosomal protein L6 M1S42_02120 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast M1S42_02125 PF00333 Ribosomal protein S5, N-terminal domain M1S42_02125 PF03719 Ribosomal protein S5, C-terminal domain M1S42_02130 PF00327 Ribosomal protein L30p/L7e M1S42_02135 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A M1S42_02140 PF00344 SecY translocase M1S42_02145 PF00444 Ribosomal protein L36 M1S42_02150 PF00416 Ribosomal protein S13/S18 M1S42_02155 PF00411 Ribosomal protein S11 M1S42_02160 PF00163 Ribosomal protein S4/S9 N-terminal domain M1S42_02160 PF01479 S4 domain M1S42_02165 PF01000 RNA polymerase Rpb3/RpoA insert domain M1S42_02165 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain M1S42_02165 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain M1S42_02170 PF01196 Ribosomal protein L17 M1S42_02175 PF00743 Flavin-binding monooxygenase-like M1S42_02180 PF02771 Acyl-CoA dehydrogenase, N-terminal domain M1S42_02180 PF02770 Acyl-CoA dehydrogenase, middle domain M1S42_02180 PF00441 Acyl-CoA dehydrogenase, C-terminal domain M1S42_02185 PF03937 Flavinator of succinate dehydrogenase M1S42_02215 PF09526 Probable metal-binding protein (DUF2387) M1S42_02220 PF01432 Peptidase family M3 M1S42_02225 PF00575 S1 RNA binding domain M1S42_02225 PF08206 Ribonuclease B OB domain M1S42_02225 PF08461 Ribonuclease R winged-helix domain M1S42_02225 PF17876 Cold shock domain M1S42_02225 PF00773 RNB domain M1S42_02275 PF01557 Fumarylacetoacetate (FAA) hydrolase family M1S42_02280 PF12833 Helix-turn-helix domain M1S42_02285 PF00892 EamA-like transporter family M1S42_02290 PF03631 Virulence factor BrkB M1S42_02295 PF03358 NADPH-dependent FMN reductase M1S42_02320 PF02130 Uncharacterized protein family UPF0054 M1S42_02325 PF02562 PhoH-like protein M1S42_02330 PF04055 Radical SAM superfamily M1S42_02330 PF01938 TRAM domain M1S42_02330 PF00919 Uncharacterized protein family UPF0004 M1S42_02335 PF01551 Peptidase family M23 M1S42_02335 PF01464 Transglycosylase SLT domain M1S42_02335 PF10145 Phage-related minor tail protein M1S42_02345 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain M1S42_02345 PF00056 lactate/malate dehydrogenase, NAD binding domain M1S42_02365 PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ M1S42_02370 PF01066 CDP-alcohol phosphatidyltransferase M1S42_02415 PF00441 Acyl-CoA dehydrogenase, C-terminal domain M1S42_02415 PF02771 Acyl-CoA dehydrogenase, N-terminal domain M1S42_02415 PF02770 Acyl-CoA dehydrogenase, middle domain M1S42_02420 PF17932 Tetracyclin repressor-like, C-terminal domain M1S42_02420 PF00440 Bacterial regulatory proteins, tetR family M1S42_02435 PF01039 Carboxyl transferase domain M1S42_02440 PF02771 Acyl-CoA dehydrogenase, N-terminal domain M1S42_02440 PF02770 Acyl-CoA dehydrogenase, middle domain M1S42_02440 PF00441 Acyl-CoA dehydrogenase, C-terminal domain M1S42_02450 PF00289 Biotin carboxylase, N-terminal domain M1S42_02450 PF02785 Biotin carboxylase C-terminal domain M1S42_02450 PF00364 Biotin-requiring enzyme M1S42_02450 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain M1S42_02460 PF04386 Stringent starvation protein B M1S42_02465 PF00043 Glutathione S-transferase, C-terminal domain M1S42_02465 PF13417 Glutathione S-transferase, N-terminal domain M1S42_02470 PF00380 Ribosomal protein S9/S16 M1S42_02475 PF00572 Ribosomal protein L13 M1S42_02480 PF04166 Pyridoxal phosphate biosynthetic protein PdxA M1S42_02485 PF00398 Ribosomal RNA adenine dimethylase M1S42_02490 PF00149 Calcineurin-like phosphoesterase M1S42_02510 PF16360 GTP-binding GTPase Middle Region M1S42_02510 PF13167 GTP-binding GTPase N-terminal M1S42_02510 PF01926 50S ribosome-binding GTPase M1S42_02520 PF13091 PLD-like domain M1S42_02525 PF10518 TAT (twin-arginine translocation) pathway signal sequence M1S42_02525 PF00149 Calcineurin-like phosphoesterase M1S42_02530 PF00691 OmpA family M1S42_02530 PF01389 OmpA-like transmembrane domain M1S42_02535 PF17152 Periplasmic sensor domain M1S42_02535 PF00990 Diguanylate cyclase, GGDEF domain M1S42_02570 PF07992 Pyridine nucleotide-disulphide oxidoreductase M1S42_02570 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain M1S42_02580 PF00753 Metallo-beta-lactamase superfamily M1S42_02580 PF04273 Putative phosphatase (DUF442) M1S42_02585 PF00561 alpha/beta hydrolase fold M1S42_02590 PF00085 Thioredoxin M1S42_02595 PF03061 Thioesterase superfamily M1S42_02605 PF04461 Protein of unknown function (DUF520) M1S42_02615 PF05430 S-adenosyl-L-methionine-dependent methyltransferase M1S42_02615 PF01266 FAD dependent oxidoreductase M1S42_02625 PF03795 YCII-related domain M1S42_02630 PF04279 Intracellular septation protein A M1S42_02635 PF02811 PHP domain M1S42_02640 PF01062 Bestrophin, RFP-TM, chloride channel M1S42_02645 PF04002 RadC-like JAB domain M1S42_02650 PF04127 DNA / pantothenate metabolism flavoprotein M1S42_02650 PF02441 Flavoprotein M1S42_02655 PF07549 SecD/SecF GG Motif M1S42_02655 PF02355 Protein export membrane protein M1S42_02660 PF07549 SecD/SecF GG Motif M1S42_02660 PF13721 SecD export protein N-terminal TM region M1S42_02660 PF02355 Protein export membrane protein M1S42_02665 PF02699 Preprotein translocase subunit M1S42_02670 PF01702 Queuine tRNA-ribosyltransferase M1S42_02685 PF02547 Queuosine biosynthesis protein M1S42_02710 PF03710 Glutamate-ammonia ligase adenylyltransferase M1S42_02710 PF08335 GlnD PII-uridylyltransferase M1S42_02715 PF01063 Amino-transferase class IV M1S42_02730 PF01522 Polysaccharide deacetylase M1S42_02735 PF00535 Glycosyl transferase family 2 M1S42_02740 PF00534 Glycosyl transferases group 1 M1S42_02740 PF13439 Glycosyltransferase Family 4 M1S42_02765 PF17101 Stealth protein CR1, conserved region 1 M1S42_02765 PF11380 Stealth protein CR2, conserved region 2 M1S42_02765 PF17102 Stealth protein CR3, conserved region 3 M1S42_02770 PF02938 GAD domain M1S42_02770 PF01336 OB-fold nucleic acid binding domain M1S42_02770 PF00152 tRNA synthetases class II (D, K and N) M1S42_02780 PF07715 TonB-dependent Receptor Plug Domain M1S42_02780 PF00593 TonB dependent receptor M1S42_02800 PF06146 Phosphate-starvation-inducible E M1S42_02805 PF00043 Glutathione S-transferase, C-terminal domain M1S42_02805 PF02798 Glutathione S-transferase, N-terminal domain M1S42_02810 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M1S42_02810 PF03466 LysR substrate binding domain M1S42_02815 PF02771 Acyl-CoA dehydrogenase, N-terminal domain M1S42_02815 PF02770 Acyl-CoA dehydrogenase, middle domain M1S42_02815 PF12806 Acetyl-CoA dehydrogenase C-terminal like M1S42_02815 PF00441 Acyl-CoA dehydrogenase, C-terminal domain M1S42_02820 PF00441 Acyl-CoA dehydrogenase, C-terminal domain M1S42_02820 PF12806 Acetyl-CoA dehydrogenase C-terminal like M1S42_02820 PF02770 Acyl-CoA dehydrogenase, middle domain M1S42_02820 PF02771 Acyl-CoA dehydrogenase, N-terminal domain M1S42_02830 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M1S42_02830 PF00512 His Kinase A (phospho-acceptor) domain M1S42_02830 PF00672 HAMP domain M1S42_02835 PF00072 Response regulator receiver domain M1S42_02835 PF00486 Transcriptional regulatory protein, C terminal M1S42_02840 PF02696 Uncharacterized ACR, YdiU/UPF0061 family M1S42_02860 PF01923 Cobalamin adenosyltransferase M1S42_02865 PF00593 TonB dependent receptor M1S42_02865 PF07715 TonB-dependent Receptor Plug Domain M1S42_02870 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase M1S42_02875 PF00291 Pyridoxal-phosphate dependent enzyme M1S42_02900 PF00290 Tryptophan synthase alpha chain M1S42_02905 PF01039 Carboxyl transferase domain M1S42_02910 PF02875 Mur ligase family, glutamate ligase domain M1S42_02910 PF08245 Mur ligase middle domain M1S42_02925 PF00753 Metallo-beta-lactamase superfamily M1S42_02930 PF00578 AhpC/TSA family M1S42_02930 PF10417 C-terminal domain of 1-Cys peroxiredoxin M1S42_02935 PF07516 SecA Wing and Scaffold domain M1S42_02935 PF01043 SecA preprotein cross-linking domain M1S42_02935 PF07517 SecA DEAD-like domain M1S42_02935 PF02810 SEC-C motif M1S42_02945 PF07690 Major Facilitator Superfamily M1S42_02945 PF00083 Sugar (and other) transporter M1S42_02950 PF03006 Haemolysin-III related M1S42_02975 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain M1S42_02975 PF00378 Enoyl-CoA hydratase/isomerase M1S42_02975 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain M1S42_02980 PF02803 Thiolase, C-terminal domain M1S42_02980 PF00108 Thiolase, N-terminal domain M1S42_02985 PF12833 Helix-turn-helix domain M1S42_02985 PF02311 AraC-like ligand binding domain M1S42_02990 PF02515 CoA-transferase family III M1S42_02995 PF04966 Carbohydrate-selective porin, OprB family M1S42_03000 PF01011 PQQ enzyme repeat M1S42_03005 PF01077 Nitrite and sulphite reductase 4Fe-4S domain M1S42_03005 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain M1S42_03015 PF00893 Small Multidrug Resistance protein M1S42_03025 PF00108 Thiolase, N-terminal domain M1S42_03025 PF02803 Thiolase, C-terminal domain M1S42_03035 PF13505 Outer membrane protein beta-barrel domain M1S42_03035 PF00691 OmpA family M1S42_03045 PF01139 tRNA-splicing ligase RtcB M1S42_03050 PF00324 Amino acid permease M1S42_03055 PF05175 Methyltransferase small domain M1S42_03055 PF08468 Methyltransferase small domain N-terminal M1S42_03060 PF00860 Permease family M1S42_03065 PF00679 Elongation factor G C-terminus M1S42_03065 PF00009 Elongation factor Tu GTP binding domain M1S42_03065 PF03144 Elongation factor Tu domain 2 M1S42_03070 PF01741 Large-conductance mechanosensitive channel, MscL M1S42_03085 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain M1S42_03085 PF06827 Zinc finger found in FPG and IleRS M1S42_03085 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain M1S42_03090 PF02245 Methylpurine-DNA glycosylase (MPG) M1S42_03110 PF00724 NADH:flavin oxidoreductase / NADH oxidase family M1S42_03125 PF10411 Disulfide bond isomerase protein N-terminus M1S42_03125 PF13098 Thioredoxin-like domain M1S42_03130 PF01571 Aminomethyltransferase folate-binding domain M1S42_03140 PF04343 Protein of unknown function, DUF488 M1S42_03145 PF03831 PhnA domain M1S42_03145 PF08274 PhnA Zinc-Ribbon M1S42_03150 PF07411 Domain of unknown function (DUF1508) M1S42_03155 PF03129 Anticodon binding domain M1S42_03155 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) M1S42_03155 PF04073 Aminoacyl-tRNA editing domain M1S42_03160 PF00873 AcrB/AcrD/AcrF family M1S42_03175 PF00072 Response regulator receiver domain M1S42_03180 PF00072 Response regulator receiver domain M1S42_03185 PF01584 CheW-like domain M1S42_03190 PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term M1S42_03190 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain M1S42_03195 PF01584 CheW-like domain M1S42_03195 PF00072 Response regulator receiver domain M1S42_03195 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M1S42_03195 PF01627 Hpt domain M1S42_03205 PF01546 Peptidase family M20/M25/M40 M1S42_03205 PF07687 Peptidase dimerisation domain M1S42_03210 PF08085 Entericidin EcnA/B family M1S42_03220 PF04304 Protein of unknown function (DUF454) M1S42_03225 PF03734 L,D-transpeptidase catalytic domain M1S42_03225 PF17969 L,D-transpeptidase C-terminal domain M1S42_03265 PF00258 Flavodoxin M1S42_03265 PF00667 FAD binding domain M1S42_03265 PF00175 Oxidoreductase NAD-binding domain M1S42_03275 PF12805 FUSC-like inner membrane protein yccS M1S42_03280 PF07690 Major Facilitator Superfamily M1S42_03285 PF00881 Nitroreductase family M1S42_03300 PF01235 Sodium:alanine symporter family M1S42_03305 PF01734 Patatin-like phospholipase M1S42_03310 PF00291 Pyridoxal-phosphate dependent enzyme M1S42_03310 PF13291 ACT domain M1S42_03315 PF05992 SbmA/BacA-like family M1S42_03345 PF02637 GatB domain M1S42_03345 PF02934 GatB/GatE catalytic domain M1S42_03350 PF01425 Amidase M1S42_03355 PF02686 Glu-tRNAGln amidotransferase C subunit M1S42_03365 PF04085 rod shape-determining protein MreC M1S42_03375 PF02545 Maf-like protein M1S42_03380 PF00575 S1 RNA binding domain M1S42_03380 PF10150 Ribonuclease E/G family M1S42_03390 PF03007 Wax ester synthase-like Acyl-CoA acyltransferase domain M1S42_03390 PF06974 Protein of unknown function (DUF1298) M1S42_03395 PF01507 Phosphoadenosine phosphosulfate reductase family M1S42_03410 PF02525 Flavodoxin-like fold M1S42_03430 PF02673 Bacitracin resistance protein BacA M1S42_03435 PF06719 AraC-type transcriptional regulator N-terminus M1S42_03435 PF12833 Helix-turn-helix domain M1S42_03440 PF14765 Polyketide synthase dehydratase M1S42_03440 PF00550 Phosphopantetheine attachment site M1S42_03440 PF08659 KR domain M1S42_03440 PF02801 Beta-ketoacyl synthase, C-terminal domain M1S42_03440 PF09277 Erythronolide synthase, docking M1S42_03440 PF08990 Erythronolide synthase docking M1S42_03440 PF08240 Alcohol dehydrogenase GroES-like domain M1S42_03440 PF00698 Acyl transferase domain M1S42_03440 PF00109 Beta-ketoacyl synthase, N-terminal domain M1S42_03440 PF16197 Ketoacyl-synthetase C-terminal extension M1S42_03445 PF01965 DJ-1/PfpI family M1S42_03455 PF00324 Amino acid permease M1S42_03460 PF04303 PrpF protein M1S42_03465 PF00348 Polyprenyl synthetase M1S42_03470 PF04237 YjbR M1S42_03475 PF01145 SPFH domain / Band 7 family M1S42_03485 PF01734 Patatin-like phospholipase M1S42_03505 PF08019 Phosphoethanolamine transferase EptA/EptB M1S42_03505 PF00884 Sulfatase M1S42_03510 PF00486 Transcriptional regulatory protein, C terminal M1S42_03510 PF00072 Response regulator receiver domain M1S42_03515 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M1S42_03515 PF00512 His Kinase A (phospho-acceptor) domain M1S42_03515 PF08521 Two-component sensor kinase N-terminal M1S42_03525 PF00909 Ammonium Transporter Family M1S42_03530 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M1S42_03530 PF03466 LysR substrate binding domain M1S42_03550 PF08264 Anticodon-binding domain of tRNA M1S42_03550 PF00133 tRNA synthetases class I (I, L, M and V) M1S42_03550 PF10458 Valyl tRNA synthetase tRNA binding arm M1S42_03570 PF01906 Putative heavy-metal-binding M1S42_03575 PF01906 Putative heavy-metal-binding M1S42_03580 PF02321 Outer membrane efflux protein M1S42_03585 PF00873 AcrB/AcrD/AcrF family M1S42_03590 PF00529 HlyD membrane-fusion protein of T1SS M1S42_03590 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion M1S42_03595 PF01569 PAP2 superfamily M1S42_03605 PF00348 Polyprenyl synthetase M1S42_03615 PF00829 Ribosomal prokaryotic L21 protein M1S42_03620 PF01016 Ribosomal L27 protein M1S42_03625 PF03548 Outer membrane lipoprotein carrier protein LolA M1S42_03635 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) M1S42_03635 PF02403 Seryl-tRNA synthetase N-terminal domain M1S42_03640 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases M1S42_03640 PF14824 Sirohaem biosynthesis protein central M1S42_03640 PF10414 Sirohaem synthase dimerisation region M1S42_03645 PF00588 SpoU rRNA Methylase family M1S42_03650 PF01638 HxlR-like helix-turn-helix M1S42_03655 PF03358 NADPH-dependent FMN reductase M1S42_03660 PF13520 Amino acid permease M1S42_03665 PF00465 Iron-containing alcohol dehydrogenase M1S42_03675 PF03099 Biotin/lipoate A/B protein ligase family M1S42_03680 PF04359 Protein of unknown function (DUF493) M1S42_03685 PF03979 Sigma-70 factor, region 1.1 M1S42_03685 PF00140 Sigma-70 factor, region 1.2 M1S42_03685 PF04542 Sigma-70 region 2 M1S42_03685 PF04539 Sigma-70 region 3 M1S42_03685 PF04545 Sigma-70, region 4 M1S42_03685 PF04546 Sigma-70, non-essential region M1S42_03705 PF00581 Rhodanese-like domain M1S42_03705 PF17773 UPF0176 acylphosphatase like domain M1S42_03715 PF00285 Citrate synthase, C-terminal domain M1S42_03720 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit M1S42_03725 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit M1S42_03730 PF00890 FAD binding domain M1S42_03730 PF02910 Fumarate reductase flavoprotein C-term M1S42_03735 PF13085 2Fe-2S iron-sulfur cluster binding domain M1S42_03750 PF02779 Transketolase, pyrimidine binding domain M1S42_03750 PF16870 2-oxoglutarate dehydrogenase C-terminal M1S42_03750 PF16078 2-oxoglutarate dehydrogenase N-terminus M1S42_03750 PF00676 Dehydrogenase E1 component M1S42_03755 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) M1S42_03755 PF00364 Biotin-requiring enzyme M1S42_03755 PF02817 e3 binding domain M1S42_03760 PF07992 Pyridine nucleotide-disulphide oxidoreductase M1S42_03760 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain M1S42_03765 PF08442 ATP-grasp domain M1S42_03765 PF00549 CoA-ligase M1S42_03770 PF02629 CoA binding domain M1S42_03770 PF00549 CoA-ligase M1S42_03775 PF00579 tRNA synthetases class I (W and Y) M1S42_03780 PF05661 Protein of unknown function (DUF808) M1S42_03785 PF04228 Putative neutral zinc metallopeptidase M1S42_03790 PF00999 Sodium/hydrogen exchanger family M1S42_03805 PF09587 Bacterial capsule synthesis protein PGA_cap M1S42_03815 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain M1S42_03820 PF00582 Universal stress protein family M1S42_03825 PF00132 Bacterial transferase hexapeptide (six repeats) M1S42_03830 PF01272 Transcription elongation factor, GreA/GreB, C-term M1S42_03830 PF03449 Transcription elongation factor, N-terminal M1S42_03835 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain M1S42_03835 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain M1S42_03835 PF02142 MGS-like domain M1S42_03840 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain M1S42_03840 PF00117 Glutamine amidotransferase class-I M1S42_03855 PF01985 CRS1 / YhbY (CRM) domain M1S42_03860 PF01728 FtsJ-like methyltransferase M1S42_03865 PF00004 ATPase family associated with various cellular activities (AAA) M1S42_03865 PF06480 FtsH Extracellular M1S42_03865 PF01434 Peptidase family M41 M1S42_03865 PF17862 AAA+ lid domain M1S42_03870 PF00809 Pterin binding enzyme M1S42_03890 PF09423 PhoD-like phosphatase M1S42_03890 PF16655 PhoD-like phosphatase, N-terminal domain M1S42_03905 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain M1S42_03905 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain M1S42_03920 PF00083 Sugar (and other) transporter M1S42_03925 PF00370 FGGY family of carbohydrate kinases, N-terminal domain M1S42_03925 PF02782 FGGY family of carbohydrate kinases, C-terminal domain M1S42_03930 PF01266 FAD dependent oxidoreductase M1S42_03930 PF16901 C-terminal domain of alpha-glycerophosphate oxidase M1S42_03935 PF00821 Phosphoenolpyruvate carboxykinase C-terminal P-loop domain M1S42_03935 PF17297 Phosphoenolpyruvate carboxykinase N-terminal domain M1S42_03940 PF00781 Diacylglycerol kinase catalytic domain M1S42_03945 PF00149 Calcineurin-like phosphoesterase M1S42_03955 PF00166 Chaperonin 10 Kd subunit M1S42_03960 PF00118 TCP-1/cpn60 chaperonin family M1S42_03965 PF01219 Prokaryotic diacylglycerol kinase M1S42_03975 PF03009 Glycerophosphoryl diester phosphodiesterase family M1S42_03980 PF00873 AcrB/AcrD/AcrF family M1S42_03990 PF01435 Peptidase family M48 M1S42_03995 PF01464 Transglycosylase SLT domain M1S42_04000 PF01171 PP-loop family M1S42_04010 PF00497 Bacterial extracellular solute-binding proteins, family 3 M1S42_04010 PF01464 Transglycosylase SLT domain M1S42_04015 PF01272 Transcription elongation factor, GreA/GreB, C-term M1S42_04015 PF03449 Transcription elongation factor, N-terminal M1S42_04030 PF13193 AMP-binding enzyme C-terminal domain M1S42_04030 PF00668 Condensation domain M1S42_04030 PF00550 Phosphopantetheine attachment site M1S42_04030 PF00501 AMP-binding enzyme M1S42_04030 PF00975 Thioesterase domain M1S42_04060 PF00881 Nitroreductase family M1S42_04075 PF02595 Glycerate kinase family M1S42_04080 PF00384 Molybdopterin oxidoreductase M1S42_04085 PF02634 FdhD/NarQ family M1S42_04090 PF06803 Protein of unknown function (DUF1232) M1S42_04095 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain M1S42_04095 PF11890 Domain of unknown function (DUF3410) M1S42_04095 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain M1S42_04100 PF00152 tRNA synthetases class II (D, K and N) M1S42_04110 PF18073 Rubredoxin metal binding domain M1S42_04115 PF00324 Amino acid permease M1S42_04125 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain M1S42_04125 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain M1S42_04130 PF01678 Diaminopimelate epimerase M1S42_04135 PF01810 LysE type translocator M1S42_04140 PF02899 Phage integrase, N-terminal SAM-like domain M1S42_04140 PF00589 Phage integrase family M1S42_04145 PF01012 Electron transfer flavoprotein domain M1S42_04150 PF01012 Electron transfer flavoprotein domain M1S42_04150 PF00766 Electron transfer flavoprotein FAD-binding domain M1S42_04155 PF00521 DNA gyrase/topoisomerase IV, subunit A M1S42_04155 PF03989 DNA gyrase C-terminal domain, beta-propeller M1S42_04170 PF00535 Glycosyl transferase family 2 M1S42_04190 PF13533 Biotin-lipoyl like M1S42_04200 PF00266 Aminotransferase class-V M1S42_04215 PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 M1S42_04225 PF02687 FtsX-like permease family M1S42_04225 PF12704 MacB-like periplasmic core domain M1S42_04230 PF00005 ABC transporter M1S42_04235 PF03772 Competence protein M1S42_04235 PF13567 Domain of unknown function (DUF4131) M1S42_04235 PF00753 Metallo-beta-lactamase superfamily M1S42_04245 PF06965 Na+/H+ antiporter 1 M1S42_04245 PF01343 Peptidase family S49 M1S42_04250 PF12697 Alpha/beta hydrolase family M1S42_04255 PF00551 Formyl transferase M1S42_04260 PF00586 AIR synthase related protein, N-terminal domain M1S42_04260 PF02769 AIR synthase related protein, C-terminal domain M1S42_04265 PF01594 AI-2E family transporter M1S42_04270 PF11638 DnaA N-terminal domain M1S42_04270 PF08299 Bacterial dnaA protein helix-turn-helix M1S42_04270 PF00308 Bacterial dnaA protein M1S42_04300 PF08032 RNA 2'-O ribose methyltransferase substrate binding M1S42_04300 PF00588 SpoU rRNA Methylase family M1S42_04315 PF00691 OmpA family M1S42_04320 PF07676 WD40-like Beta Propeller Repeat M1S42_04320 PF04052 TolB amino-terminal domain M1S42_04330 PF02472 Biopolymer transport protein ExbD/TolR M1S42_04335 PF01618 MotA/TolQ/ExbB proton channel family M1S42_04340 PF03061 Thioesterase superfamily M1S42_04345 PF07687 Peptidase dimerisation domain M1S42_04345 PF01546 Peptidase family M20/M25/M40 M1S42_04350 PF17864 RuvB AAA lid domain M1S42_04350 PF05491 RuvB C-terminal winged helix domain M1S42_04350 PF05496 Holliday junction DNA helicase RuvB P-loop domain M1S42_04355 PF07499 RuvA, C-terminal domain M1S42_04355 PF01330 RuvA N terminal domain M1S42_04360 PF01966 HD domain M1S42_04365 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain M1S42_04365 PF18076 Formylglycinamide ribonucleotide amidotransferase N-terminal M1S42_04365 PF02769 AIR synthase related protein, C-terminal domain M1S42_04370 PF07690 Major Facilitator Superfamily M1S42_04375 PF01784 NIF3 (NGG1p interacting factor 3) M1S42_04380 PF00378 Enoyl-CoA hydratase/isomerase M1S42_04385 PF01467 Cytidylyltransferase-like M1S42_04385 PF00293 NUDIX domain M1S42_04395 PF00578 AhpC/TSA family M1S42_04410 PF06508 Queuosine biosynthesis protein QueC M1S42_04420 PF14602 Hexapeptide repeat of succinyl-transferase M1S42_04420 PF14805 Tetrahydrodipicolinate N-succinyltransferase N-terminal M1S42_04420 PF00132 Bacterial transferase hexapeptide (six repeats) M1S42_04430 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M1S42_04430 PF03466 LysR substrate binding domain M1S42_04435 PF00005 ABC transporter M1S42_04435 PF12857 TOBE-like domain M1S42_04440 PF00528 Binding-protein-dependent transport system inner membrane component M1S42_04445 PF00528 Binding-protein-dependent transport system inner membrane component M1S42_04460 PF01063 Amino-transferase class IV M1S42_04465 PF02618 YceG-like family M1S42_04470 PF02223 Thymidylate kinase M1S42_04480 PF00890 FAD binding domain M1S42_04480 PF02910 Fumarate reductase flavoprotein C-term M1S42_04485 PF13180 PDZ domain M1S42_04495 PF00679 Elongation factor G C-terminus M1S42_04495 PF06421 GTP-binding protein LepA C-terminus M1S42_04495 PF03144 Elongation factor Tu domain 2 M1S42_04495 PF00009 Elongation factor Tu GTP binding domain M1S42_04500 PF10502 Signal peptidase, peptidase S26 M1S42_04510 PF14622 Ribonuclease-III-like M1S42_04510 PF00035 Double-stranded RNA binding motif M1S42_04515 PF07650 KH domain M1S42_04515 PF01926 50S ribosome-binding GTPase M1S42_04525 PF11967 Recombination protein O N terminal M1S42_04525 PF02565 Recombination protein O C terminal M1S42_04530 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ M1S42_04535 PF06175 tRNA-(MS[2]IO[6]A)-hydroxylase (MiaE) M1S42_04540 PF00106 short chain dehydrogenase M1S42_04570 PF00155 Aminotransferase class I and II M1S42_04580 PF17151 Periplasmic sensor domain M1S42_04580 PF00990 Diguanylate cyclase, GGDEF domain M1S42_04590 PF12344 Ultra-violet resistance protein B M1S42_04590 PF04851 Type III restriction enzyme, res subunit M1S42_04590 PF02151 UvrB/uvrC motif M1S42_04590 PF17757 UvrB interaction domain M1S42_04590 PF00271 Helicase conserved C-terminal domain M1S42_04600 PF00892 EamA-like transporter family M1S42_04605 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain M1S42_04605 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain M1S42_04620 PF01018 GTP1/OBG M1S42_04620 PF01926 50S ribosome-binding GTPase M1S42_04625 PF01472 PUA domain M1S42_04625 PF00696 Amino acid kinase family M1S42_04635 PF07759 Protein of unknown function (DUF1615) M1S42_04640 PF01207 Dihydrouridine synthase (Dus) M1S42_04645 PF03060 Nitronate monooxygenase M1S42_04660 PF02350 UDP-N-acetylglucosamine 2-epimerase M1S42_04690 PF03441 FAD binding domain of DNA photolyase M1S42_04690 PF00875 DNA photolyase M1S42_04695 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase M1S42_04700 PF07992 Pyridine nucleotide-disulphide oxidoreductase M1S42_04705 PF07943 Penicillin-binding protein 5, C-terminal domain M1S42_04705 PF00768 D-alanyl-D-alanine carboxypeptidase M1S42_04715 PF03971 Monomeric isocitrate dehydrogenase M1S42_04720 PF00849 RNA pseudouridylate synthase M1S42_04725 PF00180 Isocitrate/isopropylmalate dehydrogenase M1S42_04745 PF06779 Uncharacterised MFS-type transporter YbfB M1S42_04750 PF03466 LysR substrate binding domain M1S42_04750 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M1S42_04755 PF00375 Sodium:dicarboxylate symporter family M1S42_04760 PF02567 Phenazine biosynthesis-like protein M1S42_04765 PF00675 Insulinase (Peptidase family M16) M1S42_04765 PF05193 Peptidase M16 inactive domain M1S42_04790 PF02581 Thiamine monophosphate synthase M1S42_04795 PF00202 Aminotransferase class-III M1S42_04805 PF00849 RNA pseudouridylate synthase M1S42_04810 PF18339 RapA N-terminal Tudor like domain 1 M1S42_04810 PF00176 SNF2 family N-terminal domain M1S42_04810 PF00271 Helicase conserved C-terminal domain M1S42_04810 PF18337 RapA N-terminal Tudor like domain M1S42_04810 PF12137 RNA polymerase recycling family C-terminal M1S42_04820 PF00440 Bacterial regulatory proteins, tetR family M1S42_04825 PF00175 Oxidoreductase NAD-binding domain M1S42_04825 PF00111 2Fe-2S iron-sulfur cluster binding domain M1S42_04825 PF00970 Oxidoreductase FAD-binding domain M1S42_04830 PF00487 Fatty acid desaturase M1S42_04840 PF00440 Bacterial regulatory proteins, tetR family M1S42_04840 PF17754 MftR C-terminal domain M1S42_04850 PF00202 Aminotransferase class-III M1S42_04855 PF00282 Pyridoxal-dependent decarboxylase conserved domain M1S42_04860 PF00171 Aldehyde dehydrogenase family M1S42_04865 PF01037 Lrp/AsnC ligand binding domain M1S42_04870 PF00205 Thiamine pyrophosphate enzyme, central domain M1S42_04870 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain M1S42_04870 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain M1S42_04875 PF00324 Amino acid permease M1S42_04880 PF12849 PBP superfamily domain M1S42_04885 PF00528 Binding-protein-dependent transport system inner membrane component M1S42_04890 PF00528 Binding-protein-dependent transport system inner membrane component M1S42_04895 PF00005 ABC transporter M1S42_04900 PF01343 Peptidase family S49 M1S42_04900 PF08496 Peptidase family S49 N-terminal M1S42_04915 PF00206 Lyase M1S42_04915 PF08328 Adenylosuccinate lyase C-terminal M1S42_04920 PF04356 Protein of unknown function (DUF489) M1S42_04930 PF00293 NUDIX domain M1S42_04930 PF13344 Haloacid dehalogenase-like hydrolase M1S42_04935 PF00132 Bacterial transferase hexapeptide (six repeats) M1S42_04940 PF07943 Penicillin-binding protein 5, C-terminal domain M1S42_04940 PF00768 D-alanyl-D-alanine carboxypeptidase M1S42_04955 PF01975 Survival protein SurE M1S42_04960 PF01476 LysM domain M1S42_04960 PF01551 Peptidase family M23 M1S42_04965 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M1S42_04965 PF03466 LysR substrate binding domain M1S42_04970 PF13654 AAA domain M1S42_04970 PF05362 Lon protease (S16) C-terminal proteolytic domain M1S42_04975 PF07690 Major Facilitator Superfamily M1S42_04980 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily M1S42_04985 PF13593 SBF-like CPA transporter family (DUF4137) M1S42_04990 PF01197 Ribosomal protein L31 M1S42_05005 PF04055 Radical SAM superfamily M1S42_05010 PF09285 Elongation factor P, C-terminal M1S42_05010 PF01132 Elongation factor P (EF-P) OB domain M1S42_05010 PF08207 Elongation factor P (EF-P) KOW-like domain M1S42_05015 PF02554 Carbon starvation protein CstA M1S42_05015 PF13722 5TM C-terminal transporter carbon starvation CstA M1S42_05020 PF04328 Selenoprotein, putative M1S42_05055 PF06018 CodY GAF-like domain M1S42_05055 PF17853 GGDEF-like domain M1S42_05055 PF13556 PucR C-terminal helix-turn-helix domain M1S42_05070 PF00171 Aldehyde dehydrogenase family M1S42_05075 PF00324 Amino acid permease M1S42_05080 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M1S42_05080 PF03466 LysR substrate binding domain M1S42_05085 PF02028 BCCT, betaine/carnitine/choline family transporter M1S42_05090 PF02028 BCCT, betaine/carnitine/choline family transporter M1S42_05095 PF00355 Rieske [2Fe-2S] domain M1S42_05095 PF00848 Ring hydroxylating alpha subunit (catalytic domain) M1S42_05100 PF00171 Aldehyde dehydrogenase family M1S42_05110 PF18113 Rubredoxin binding C-terminal domain M1S42_05110 PF07992 Pyridine nucleotide-disulphide oxidoreductase M1S42_05115 PF01266 FAD dependent oxidoreductase M1S42_05115 PF05430 S-adenosyl-L-methionine-dependent methyltransferase M1S42_05135 PF00892 EamA-like transporter family M1S42_05145 PF02604 Antitoxin Phd_YefM, type II toxin-antitoxin system M1S42_05150 PF00083 Sugar (and other) transporter M1S42_05155 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain M1S42_05155 PF13378 Enolase C-terminal domain-like M1S42_05160 PF16197 Ketoacyl-synthetase C-terminal extension M1S42_05160 PF00698 Acyl transferase domain M1S42_05160 PF08240 Alcohol dehydrogenase GroES-like domain M1S42_05160 PF08990 Erythronolide synthase docking M1S42_05160 PF09277 Erythronolide synthase, docking M1S42_05160 PF00109 Beta-ketoacyl synthase, N-terminal domain M1S42_05160 PF02801 Beta-ketoacyl synthase, C-terminal domain M1S42_05160 PF08659 KR domain M1S42_05160 PF00550 Phosphopantetheine attachment site M1S42_05160 PF14765 Polyketide synthase dehydratase M1S42_05165 PF00440 Bacterial regulatory proteins, tetR family M1S42_05185 PF17954 Quercetinase C-terminal cupin domain M1S42_05185 PF02678 Pirin M1S42_05195 PF08348 YheO-like PAS domain M1S42_05195 PF13309 HTH domain M1S42_05205 PF00668 Condensation domain M1S42_05205 PF00550 Phosphopantetheine attachment site M1S42_05205 PF13193 AMP-binding enzyme C-terminal domain M1S42_05205 PF00501 AMP-binding enzyme M1S42_05210 PF00550 Phosphopantetheine attachment site M1S42_05210 PF13193 AMP-binding enzyme C-terminal domain M1S42_05210 PF00975 Thioesterase domain M1S42_05210 PF00501 AMP-binding enzyme M1S42_05210 PF00668 Condensation domain M1S42_05215 PF01032 FecCD transport family M1S42_05220 PF01032 FecCD transport family M1S42_05225 PF00005 ABC transporter M1S42_05230 PF01497 Periplasmic binding protein M1S42_05235 PF07715 TonB-dependent Receptor Plug Domain M1S42_05235 PF00593 TonB dependent receptor M1S42_05240 PF13434 L-lysine 6-monooxygenase (NADPH-requiring) M1S42_05245 PF00501 AMP-binding enzyme M1S42_05245 PF00668 Condensation domain M1S42_05245 PF00550 Phosphopantetheine attachment site M1S42_05250 PF00501 AMP-binding enzyme M1S42_05250 PF13193 AMP-binding enzyme C-terminal domain M1S42_05255 PF00550 Phosphopantetheine attachment site M1S42_05255 PF00857 Isochorismatase family M1S42_05260 PF00282 Pyridoxal-dependent decarboxylase conserved domain M1S42_05270 PF00005 ABC transporter M1S42_05275 PF00005 ABC transporter M1S42_05280 PF00975 Thioesterase domain M1S42_05290 PF00425 chorismate binding enzyme M1S42_05300 PF01208 Uroporphyrinogen decarboxylase (URO-D) M1S42_05305 PF05675 Protein of unknown function (DUF817) M1S42_05320 PF00144 Beta-lactamase M1S42_05330 PF01227 GTP cyclohydrolase I M1S42_05335 PF00111 2Fe-2S iron-sulfur cluster binding domain M1S42_05335 PF01799 [2Fe-2S] binding domain M1S42_05340 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain M1S42_05340 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase M1S42_05355 PF00218 Indole-3-glycerol phosphate synthase M1S42_05360 PF00591 Glycosyl transferase family, a/b domain M1S42_05360 PF02885 Glycosyl transferase family, helical bundle domain M1S42_05365 PF07715 TonB-dependent Receptor Plug Domain M1S42_05365 PF00593 TonB dependent receptor M1S42_05370 PF11838 ERAP1-like C-terminal domain M1S42_05370 PF01433 Peptidase family M1 domain M1S42_05375 PF00117 Glutamine amidotransferase class-I M1S42_05385 PF00854 POT family M1S42_05390 PF00120 Glutamine synthetase, catalytic domain M1S42_05390 PF03951 Glutamine synthetase, beta-Grasp domain M1S42_05395 PF04345 Chorismate lyase M1S42_05400 PF01040 UbiA prenyltransferase family M1S42_05435 PF02777 Iron/manganese superoxide dismutases, C-terminal domain M1S42_05435 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain M1S42_05440 PF01784 NIF3 (NGG1p interacting factor 3) M1S42_05445 PF13180 PDZ domain M1S42_05450 PF01743 Poly A polymerase head domain M1S42_05450 PF12627 Probable RNA and SrmB- binding site of polymerase A M1S42_05455 PF00390 Malic enzyme, N-terminal domain M1S42_05455 PF03949 Malic enzyme, NAD binding domain M1S42_05455 PF01515 Phosphate acetyl/butaryl transferase M1S42_05460 PF00563 EAL domain M1S42_05460 PF00990 Diguanylate cyclase, GGDEF domain M1S42_05460 PF03707 Bacterial signalling protein N terminal repeat M1S42_05465 PF04452 RNA methyltransferase M1S42_05470 PF02219 Methylenetetrahydrofolate reductase M1S42_05475 PF05221 S-adenosyl-L-homocysteine hydrolase M1S42_05475 PF00670 S-adenosyl-L-homocysteine hydrolase, NAD binding domain M1S42_05490 PF00441 Acyl-CoA dehydrogenase, C-terminal domain M1S42_05490 PF02771 Acyl-CoA dehydrogenase, N-terminal domain M1S42_05490 PF09317 Domain of unknown function (DUF1974) M1S42_05495 PF04055 Radical SAM superfamily M1S42_05500 PF07992 Pyridine nucleotide-disulphide oxidoreductase M1S42_05500 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain M1S42_05510 PF07690 Major Facilitator Superfamily M1S42_05520 PF00557 Metallopeptidase family M24 M1S42_05525 PF00318 Ribosomal protein S2 M1S42_05530 PF00889 Elongation factor TS M1S42_05540 PF12833 Helix-turn-helix domain M1S42_05560 PF03330 Lytic transglycolase M1S42_05560 PF05036 Sporulation related domain M1S42_05565 PF13406 Transglycosylase SLT domain M1S42_05570 PF01098 Cell cycle protein M1S42_05580 PF14489 QueF-like protein M1S42_05580 PF14819 Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term M1S42_05585 PF01061 ABC-2 type transporter M1S42_05590 PF00005 ABC transporter M1S42_05620 PF00464 Serine hydroxymethyltransferase M1S42_05625 PF02321 Outer membrane efflux protein M1S42_05630 PF00873 AcrB/AcrD/AcrF family M1S42_05635 PF13533 Biotin-lipoyl like M1S42_05640 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M1S42_05640 PF03466 LysR substrate binding domain M1S42_05645 PF00497 Bacterial extracellular solute-binding proteins, family 3 M1S42_05650 PF00528 Binding-protein-dependent transport system inner membrane component M1S42_05655 PF00528 Binding-protein-dependent transport system inner membrane component M1S42_05660 PF00005 ABC transporter M1S42_05665 PF00893 Small Multidrug Resistance protein M1S42_05670 PF00037 4Fe-4S binding domain M1S42_05675 PF01136 Peptidase family U32 M1S42_05675 PF16325 Peptidase family U32 C-terminal domain M1S42_05680 PF00392 Bacterial regulatory proteins, gntR family M1S42_05680 PF00155 Aminotransferase class I and II M1S42_05685 PF02567 Phenazine biosynthesis-like protein M1S42_05690 PF00970 Oxidoreductase FAD-binding domain M1S42_05690 PF00175 Oxidoreductase NAD-binding domain M1S42_05695 PF01980 tRNA-methyltransferase O M1S42_05695 PF18389 TrmO C-terminal domain M1S42_05705 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain M1S42_05705 PF00437 Type II/IV secretion system protein M1S42_05715 PF00072 Response regulator receiver domain M1S42_05715 PF00486 Transcriptional regulatory protein, C terminal M1S42_05720 PF08521 Two-component sensor kinase N-terminal M1S42_05720 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M1S42_05720 PF00512 His Kinase A (phospho-acceptor) domain M1S42_05730 PF00293 NUDIX domain M1S42_05740 PF00912 Transglycosylase M1S42_05740 PF00905 Penicillin binding protein transpeptidase domain M1S42_05740 PF14814 Bifunctional transglycosylase second domain M1S42_05745 PF01513 ATP-NAD kinase M1S42_05750 PF07023 Protein of unknown function (DUF1315) M1S42_05755 PF00591 Glycosyl transferase family, a/b domain M1S42_05755 PF02885 Glycosyl transferase family, helical bundle domain M1S42_05760 PF00375 Sodium:dicarboxylate symporter family M1S42_05765 PF02771 Acyl-CoA dehydrogenase, N-terminal domain M1S42_05765 PF00441 Acyl-CoA dehydrogenase, C-terminal domain M1S42_05765 PF02770 Acyl-CoA dehydrogenase, middle domain M1S42_05770 PF00756 Putative esterase M1S42_05775 PF01842 ACT domain M1S42_05775 PF01817 Chorismate mutase type II M1S42_05775 PF00800 Prephenate dehydratase M1S42_05780 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) M1S42_05790 PF01546 Peptidase family M20/M25/M40 M1S42_05790 PF07687 Peptidase dimerisation domain M1S42_05795 PF12706 Beta-lactamase superfamily domain M1S42_05805 PF03883 Peroxide stress protein YaaA M1S42_05815 PF05690 Thiazole biosynthesis protein ThiG M1S42_05825 PF04241 Protein of unknown function (DUF423) M1S42_05830 PF04545 Sigma-70, region 4 M1S42_05830 PF04542 Sigma-70 region 2 M1S42_05830 PF00140 Sigma-70 factor, region 1.2 M1S42_05845 PF00313 'Cold-shock' DNA-binding domain M1S42_05850 PF00270 DEAD/DEAH box helicase M1S42_05850 PF00271 Helicase conserved C-terminal domain M1S42_05860 PF00881 Nitroreductase family M1S42_05865 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus M1S42_05865 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus M1S42_05875 PF00589 Phage integrase family M1S42_05970 PF01555 DNA methylase M1S42_06205 PF01180 Dihydroorotate dehydrogenase M1S42_06210 PF02674 Colicin V production protein M1S42_06215 PF00156 Phosphoribosyl transferase domain M1S42_06230 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain M1S42_06230 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain M1S42_06235 PF01435 Peptidase family M48 M1S42_06240 PF09424 Yqey-like protein M1S42_06245 PF01165 Ribosomal protein S21 M1S42_06250 PF00814 Glycoprotease family M1S42_06270 PF00069 Protein kinase domain M1S42_06295 PF03466 LysR substrate binding domain M1S42_06295 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M1S42_06300 PF00202 Aminotransferase class-III M1S42_06305 PF00171 Aldehyde dehydrogenase family M1S42_06310 PF00324 Amino acid permease M1S42_06340 PF04076 Bacterial OB fold (BOF) protein M1S42_06365 PF00561 alpha/beta hydrolase fold M1S42_06370 PF03616 Sodium/glutamate symporter M1S42_06380 PF00392 Bacterial regulatory proteins, gntR family M1S42_06380 PF07729 FCD domain M1S42_06430 PF08946 Osmosensory transporter coiled coil M1S42_06430 PF00083 Sugar (and other) transporter M1S42_06455 PF00155 Aminotransferase class I and II M1S42_06460 PF06826 Predicted Permease Membrane Region M1S42_06460 PF02080 TrkA-C domain M1S42_06470 PF04403 Paraquat-inducible protein A M1S42_06475 PF02470 MlaD protein M1S42_06485 PF01177 Asp/Glu/Hydantoin racemase M1S42_06490 PF00892 EamA-like transporter family M1S42_06495 PF07995 Glucose / Sorbosone dehydrogenase M1S42_06505 PF13610 DDE domain M1S42_06520 PF00005 ABC transporter M1S42_06520 PF12848 ABC transporter M1S42_06525 PF01636 Phosphotransferase enzyme family M1S42_06535 PF13005 zinc-finger binding domain of transposase IS66 M1S42_06535 PF03050 Transposase IS66 family M1S42_06535 PF13817 IS66 C-terminal element M1S42_06535 PF13007 Transposase C of IS166 homeodomain M1S42_06540 PF13610 DDE domain M1S42_06545 PF01037 Lrp/AsnC ligand binding domain M1S42_06560 PF00440 Bacterial regulatory proteins, tetR family M1S42_06565 PF00593 TonB dependent receptor M1S42_06565 PF07715 TonB-dependent Receptor Plug Domain M1S42_06570 PF00924 Mechanosensitive ion channel M1S42_06605 PF07715 TonB-dependent Receptor Plug Domain M1S42_06605 PF00593 TonB dependent receptor M1S42_06625 PF00005 ABC transporter M1S42_06625 PF12848 ABC transporter M1S42_06630 PF00582 Universal stress protein family M1S42_06655 PF00690 Cation transporter/ATPase, N-terminus M1S42_06655 PF00689 Cation transporting ATPase, C-terminus M1S42_06660 PF02308 MgtC family M1S42_06665 PF03594 Benzoate membrane transport protein M1S42_06670 PF01037 Lrp/AsnC ligand binding domain M1S42_06675 PF01810 LysE type translocator M1S42_06680 PF00923 Transaldolase/Fructose-6-phosphate aldolase M1S42_06685 PF03466 LysR substrate binding domain M1S42_06685 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M1S42_06695 PF00108 Thiolase, N-terminal domain M1S42_06695 PF02803 Thiolase, C-terminal domain M1S42_06705 PF01575 MaoC like domain M1S42_06710 PF00144 Beta-lactamase M1S42_06720 PF07690 Major Facilitator Superfamily M1S42_06725 PF12169 DNA polymerase III subunits gamma and tau domain III M1S42_06725 PF12168 DNA polymerase III subunits tau domain IV DnaB-binding M1S42_06725 PF12170 DNA polymerase III tau subunit V interacting with alpha M1S42_06730 PF05506 Domain of unknown function (DUF756) M1S42_06730 PF04185 Phosphoesterase family M1S42_06735 PF03061 Thioesterase superfamily M1S42_06740 PF00465 Iron-containing alcohol dehydrogenase M1S42_06750 PF01451 Low molecular weight phosphotyrosine protein phosphatase M1S42_06755 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain M1S42_06755 PF01565 FAD binding domain M1S42_06770 PF01645 Conserved region in glutamate synthase M1S42_07060 PF15919 HicB_like antitoxin of bacterial toxin-antitoxin system M1S42_07095 PF01476 LysM domain M1S42_07095 PF08525 Opacity-associated protein A N-terminal motif M1S42_07095 PF01551 Peptidase family M23 M1S42_07165 PF12832 MFS_1 like family M1S42_07175 PF02785 Biotin carboxylase C-terminal domain M1S42_07175 PF00289 Biotin carboxylase, N-terminal domain M1S42_07175 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain M1S42_07180 PF00364 Biotin-requiring enzyme M1S42_07185 PF01220 Dehydroquinase class II M1S42_07190 PF13438 Domain of unknown function (DUF4113) M1S42_07190 PF00817 impB/mucB/samB family M1S42_07190 PF11799 impB/mucB/samB family C-terminal domain M1S42_07200 PF00005 ABC transporter M1S42_07205 PF00072 Response regulator receiver domain M1S42_07205 PF00486 Transcriptional regulatory protein, C terminal M1S42_07215 PF07992 Pyridine nucleotide-disulphide oxidoreductase M1S42_07215 PF04324 BFD-like [2Fe-2S] binding domain M1S42_07215 PF01077 Nitrite and sulphite reductase 4Fe-4S domain M1S42_07215 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain M1S42_07215 PF13806 Rieske-like [2Fe-2S] domain M1S42_07215 PF18267 Rubredoxin NAD+ reductase C-terminal domain M1S42_07220 PF04324 BFD-like [2Fe-2S] binding domain M1S42_07220 PF01077 Nitrite and sulphite reductase 4Fe-4S domain M1S42_07220 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain M1S42_07220 PF07992 Pyridine nucleotide-disulphide oxidoreductase M1S42_07220 PF18267 Rubredoxin NAD+ reductase C-terminal domain M1S42_07225 PF04324 BFD-like [2Fe-2S] binding domain M1S42_07225 PF04879 Molybdopterin oxidoreductase Fe4S4 domain M1S42_07225 PF00384 Molybdopterin oxidoreductase M1S42_07225 PF01568 Molydopterin dinucleotide binding domain M1S42_07230 PF12804 MobA-like NTP transferase domain M1S42_07235 PF04879 Molybdopterin oxidoreductase Fe4S4 domain M1S42_07235 PF00384 Molybdopterin oxidoreductase M1S42_07235 PF01568 Molydopterin dinucleotide binding domain M1S42_07240 PF06463 Molybdenum Cofactor Synthesis C M1S42_07240 PF04055 Radical SAM superfamily M1S42_07250 PF02391 MoaE protein M1S42_07255 PF00994 Probable molybdopterin binding domain M1S42_07255 PF01967 MoaC family M1S42_07260 PF03453 MoeA N-terminal region (domain I and II) M1S42_07260 PF03454 MoeA C-terminal region (domain IV) M1S42_07260 PF00994 Probable molybdopterin binding domain M1S42_07265 PF01638 HxlR-like helix-turn-helix M1S42_07270 PF00392 Bacterial regulatory proteins, gntR family M1S42_07270 PF00155 Aminotransferase class I and II M1S42_07275 PF00892 EamA-like transporter family M1S42_07295 PF02635 DsrE/DsrF-like family M1S42_07300 PF16363 GDP-mannose 4,6 dehydratase M1S42_07305 PF10415 Fumarase C C-terminus M1S42_07305 PF00206 Lyase M1S42_07325 PF01266 FAD dependent oxidoreductase M1S42_07335 PF02542 YgbB family M1S42_07345 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain M1S42_07345 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain M1S42_07365 PF02954 Bacterial regulatory protein, Fis family M1S42_07365 PF00072 Response regulator receiver domain M1S42_07365 PF00158 Sigma-54 interaction domain M1S42_07370 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M1S42_07370 PF00512 His Kinase A (phospho-acceptor) domain M1S42_07370 PF00989 PAS fold M1S42_07375 PF04055 Radical SAM superfamily M1S42_07375 PF18693 TRAM domain M1S42_07375 PF00919 Uncharacterized protein family UPF0004 M1S42_07380 PF00696 Amino acid kinase family M1S42_07385 PF01765 Ribosome recycling factor M1S42_07390 PF01255 Putative undecaprenyl diphosphate synthase M1S42_07400 PF13288 DXP reductoisomerase C-terminal domain M1S42_07400 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase M1S42_07400 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain M1S42_07405 PF13180 PDZ domain M1S42_07405 PF17820 PDZ domain M1S42_07405 PF02163 Peptidase family M50 M1S42_07410 PF07244 Surface antigen variable number repeat M1S42_07410 PF01103 Surface antigen M1S42_07420 PF00132 Bacterial transferase hexapeptide (six repeats) M1S42_07420 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD M1S42_07425 PF07977 FabA-like domain M1S42_07430 PF00132 Bacterial transferase hexapeptide (six repeats) M1S42_07430 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 M1S42_07445 PF02631 RecX family M1S42_07450 PF00154 recA bacterial DNA recombination protein M1S42_07455 PF01479 S4 domain M1S42_07460 PF13419 Haloacid dehalogenase-like hydrolase M1S42_07485 PF01037 Lrp/AsnC ligand binding domain M1S42_07490 PF00266 Aminotransferase class-V M1S42_07495 PF00324 Amino acid permease M1S42_07510 PF00082 Subtilase family M1S42_07510 PF05922 Peptidase inhibitor I9 M1S42_07515 PF00916 Sulfate permease family M1S42_07515 PF01740 STAS domain M1S42_07520 PF02586 SOS response associated peptidase (SRAP) M1S42_07525 PF07995 Glucose / Sorbosone dehydrogenase M1S42_07535 PF00990 Diguanylate cyclase, GGDEF domain M1S42_07535 PF03707 Bacterial signalling protein N terminal repeat M1S42_07535 PF00563 EAL domain M1S42_07555 PF02378 Phosphotransferase system, EIIC M1S42_07555 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit M1S42_07560 PF00294 pfkB family carbohydrate kinase M1S42_07565 PF00381 PTS HPr component phosphorylation site M1S42_07565 PF00391 PEP-utilising enzyme, mobile domain M1S42_07565 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 M1S42_07565 PF05524 PEP-utilising enzyme, N-terminal M1S42_07565 PF02896 PEP-utilising enzyme, TIM barrel domain M1S42_07590 PF05525 Branched-chain amino acid transport protein M1S42_07595 PF00557 Metallopeptidase family M24 M1S42_07600 PF03466 LysR substrate binding domain M1S42_07600 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M1S42_07610 PF00462 Glutaredoxin M1S42_07615 PF00202 Aminotransferase class-III M1S42_07620 PF00478 IMP dehydrogenase / GMP reductase domain M1S42_07620 PF00571 CBS domain M1S42_07645 PF02881 SRP54-type protein, helical bundle domain M1S42_07645 PF00448 SRP54-type protein, GTPase domain M1S42_07670 PF08173 Membrane bound YbgT-like protein M1S42_07675 PF02322 Cytochrome bd terminal oxidase subunit II M1S42_07680 PF01654 Cytochrome bd terminal oxidase subunit I M1S42_07690 PF07290 Protein of unknown function (DUF1449) M1S42_07700 PF00294 pfkB family carbohydrate kinase M1S42_07705 PF00593 TonB dependent receptor M1S42_07705 PF07715 TonB-dependent Receptor Plug Domain M1S42_07710 PF05193 Peptidase M16 inactive domain M1S42_07710 PF00675 Insulinase (Peptidase family M16) M1S42_07710 PF08367 Peptidase M16C associated M1S42_07715 PF02253 Phospholipase A1 M1S42_07720 PF02386 Cation transport protein M1S42_07725 PF02254 TrkA-N domain M1S42_07725 PF02080 TrkA-C domain M1S42_07730 PF00291 Pyridoxal-phosphate dependent enzyme M1S42_07730 PF00585 C-terminal regulatory domain of Threonine dehydratase M1S42_07735 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) M1S42_07750 PF01118 Semialdehyde dehydrogenase, NAD binding domain M1S42_07750 PF02774 Semialdehyde dehydrogenase, dimerisation domain M1S42_07760 PF02617 ATP-dependent Clp protease adaptor protein ClpS M1S42_07765 PF10431 C-terminal, D2-small domain, of ClpB protein M1S42_07765 PF02861 Clp amino terminal domain, pathogenicity island component M1S42_07765 PF00004 ATPase family associated with various cellular activities (AAA) M1S42_07765 PF17871 AAA lid domain M1S42_07765 PF07724 AAA domain (Cdc48 subfamily) M1S42_07770 PF02694 Uncharacterised BCR, YnfA/UPF0060 family M1S42_07775 PF00793 DAHP synthetase I family M1S42_07790 PF00724 NADH:flavin oxidoreductase / NADH oxidase family M1S42_07790 PF07992 Pyridine nucleotide-disulphide oxidoreductase M1S42_07825 PF00793 DAHP synthetase I family M1S42_07830 PF03952 Enolase, N-terminal domain M1S42_07830 PF00113 Enolase, C-terminal TIM barrel domain M1S42_07840 PF04977 Septum formation initiator M1S42_07845 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase M1S42_07850 PF01144 Coenzyme A transferase M1S42_07855 PF01144 Coenzyme A transferase M1S42_07860 PF02803 Thiolase, C-terminal domain M1S42_07860 PF00108 Thiolase, N-terminal domain M1S42_07865 PF00206 Lyase M1S42_07865 PF10397 Adenylosuccinate lyase C-terminus M1S42_07870 PF00561 alpha/beta hydrolase fold M1S42_07875 PF07690 Major Facilitator Superfamily M1S42_07880 PF02627 Carboxymuconolactone decarboxylase family M1S42_07885 PF00775 Dioxygenase M1S42_07885 PF12391 Protocatechuate 3,4-dioxygenase beta subunit N terminal M1S42_07890 PF00775 Dioxygenase M1S42_07895 PF01487 Type I 3-dehydroquinase M1S42_07900 PF05048 Periplasmic copper-binding protein (NosD) M1S42_07905 PF04966 Carbohydrate-selective porin, OprB family M1S42_07910 PF13360 PQQ-like domain M1S42_07910 PF01011 PQQ enzyme repeat M1S42_07920 PF04143 Sulphur transport M1S42_07930 PF00753 Metallo-beta-lactamase superfamily M1S42_07935 PF09339 IclR helix-turn-helix domain M1S42_07935 PF01614 Bacterial transcriptional regulator M1S42_07940 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M1S42_07940 PF03466 LysR substrate binding domain M1S42_07945 PF00441 Acyl-CoA dehydrogenase, C-terminal domain M1S42_07945 PF02770 Acyl-CoA dehydrogenase, middle domain M1S42_07945 PF02771 Acyl-CoA dehydrogenase, N-terminal domain M1S42_07960 PF00106 short chain dehydrogenase M1S42_07970 PF07690 Major Facilitator Superfamily M1S42_07980 PF01425 Amidase M1S42_07985 PF08028 Acyl-CoA dehydrogenase, C-terminal domain M1S42_08000 PF00848 Ring hydroxylating alpha subunit (catalytic domain) M1S42_08000 PF00355 Rieske [2Fe-2S] domain M1S42_08015 PF00111 2Fe-2S iron-sulfur cluster binding domain M1S42_08015 PF00175 Oxidoreductase NAD-binding domain M1S42_08020 PF01613 Flavin reductase like domain M1S42_08025 PF02311 AraC-like ligand binding domain M1S42_08025 PF12833 Helix-turn-helix domain M1S42_08030 PF02727 Copper amine oxidase, N2 domain M1S42_08030 PF07833 Copper amine oxidase N-terminal domain M1S42_08030 PF01179 Copper amine oxidase, enzyme domain M1S42_08030 PF02728 Copper amine oxidase, N3 domain M1S42_08040 PF00171 Aldehyde dehydrogenase family M1S42_08045 PF01804 Penicillin amidase M1S42_08050 PF12146 Serine aminopeptidase, S33 M1S42_08055 PF02803 Thiolase, C-terminal domain M1S42_08055 PF00108 Thiolase, N-terminal domain M1S42_08060 PF01144 Coenzyme A transferase M1S42_08065 PF01144 Coenzyme A transferase M1S42_08070 PF04444 Catechol dioxygenase N terminus M1S42_08070 PF00775 Dioxygenase M1S42_08075 PF02426 Muconolactone delta-isomerase M1S42_08080 PF13378 Enolase C-terminal domain-like M1S42_08080 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain M1S42_08085 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M1S42_08085 PF03466 LysR substrate binding domain M1S42_08095 PF07729 FCD domain M1S42_08095 PF00392 Bacterial regulatory proteins, gntR family M1S42_08100 PF00920 Dehydratase family M1S42_08105 PF07690 Major Facilitator Superfamily M1S42_08115 PF00171 Aldehyde dehydrogenase family M1S42_08135 PF00441 Acyl-CoA dehydrogenase, C-terminal domain M1S42_08135 PF02770 Acyl-CoA dehydrogenase, middle domain M1S42_08135 PF02771 Acyl-CoA dehydrogenase, N-terminal domain M1S42_08145 PF02954 Bacterial regulatory protein, Fis family M1S42_08145 PF06506 Propionate catabolism activator M1S42_08145 PF00158 Sigma-54 interaction domain M1S42_08150 PF13193 AMP-binding enzyme C-terminal domain M1S42_08150 PF00501 AMP-binding enzyme M1S42_08155 PF04341 Protein of unknown function, DUF485 M1S42_08160 PF00474 Sodium:solute symporter family M1S42_08165 PF08240 Alcohol dehydrogenase GroES-like domain M1S42_08165 PF00107 Zinc-binding dehydrogenase M1S42_08180 PF00561 alpha/beta hydrolase fold M1S42_08185 PF00199 Catalase M1S42_08185 PF06628 Catalase-related immune-responsive M1S42_08200 PF07859 alpha/beta hydrolase fold M1S42_08205 PF01047 MarR family M1S42_08210 PF00724 NADH:flavin oxidoreductase / NADH oxidase family M1S42_08210 PF07992 Pyridine nucleotide-disulphide oxidoreductase M1S42_08215 PF00106 short chain dehydrogenase M1S42_08220 PF01872 RibD C-terminal domain M1S42_08225 PF09278 MerR, DNA binding M1S42_08225 PF00376 MerR family regulatory protein M1S42_08235 PF07992 Pyridine nucleotide-disulphide oxidoreductase M1S42_08245 PF12706 Beta-lactamase superfamily domain M1S42_08250 PF00440 Bacterial regulatory proteins, tetR family M1S42_08250 PF08359 YsiA-like protein, C-terminal region M1S42_08260 PF00857 Isochorismatase family M1S42_08265 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M1S42_08265 PF03466 LysR substrate binding domain M1S42_08270 PF07995 Glucose / Sorbosone dehydrogenase M1S42_08275 PF00999 Sodium/hydrogen exchanger family M1S42_08275 PF02254 TrkA-N domain M1S42_08285 PF01546 Peptidase family M20/M25/M40 M1S42_08285 PF07687 Peptidase dimerisation domain M1S42_08295 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB M1S42_08295 PF08479 POTRA domain, ShlB-type M1S42_08295 PF17287 POTRA domain M1S42_08300 PF13018 Extended Signal Peptide of Type V secretion system M1S42_08300 PF13332 Hemagglutinin repeat M1S42_08300 PF05860 haemagglutination activity domain M1S42_08300 PF04829 Pre-toxin domain with VENN motif M1S42_08315 PF07690 Major Facilitator Superfamily M1S42_08320 PF04909 Amidohydrolase M1S42_08330 PF07702 UTRA domain M1S42_08330 PF00392 Bacterial regulatory proteins, gntR family M1S42_08335 PF08450 SMP-30/Gluconolactonase/LRE-like region M1S42_08345 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M1S42_08345 PF03466 LysR substrate binding domain M1S42_08365 PF07690 Major Facilitator Superfamily M1S42_08370 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain M1S42_08370 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain M1S42_08370 PF01842 ACT domain M1S42_08375 PF03737 Aldolase/RraA M1S42_08405 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion M1S42_08405 PF00529 HlyD membrane-fusion protein of T1SS M1S42_08420 PF00171 Aldehyde dehydrogenase family M1S42_08425 PF00920 Dehydratase family M1S42_08435 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M1S42_08435 PF03466 LysR substrate binding domain M1S42_08440 PF01370 NAD dependent epimerase/dehydratase family M1S42_08445 PF07690 Major Facilitator Superfamily M1S42_08450 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase M1S42_08450 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase M1S42_08455 PF12833 Helix-turn-helix domain M1S42_08455 PF06719 AraC-type transcriptional regulator N-terminus M1S42_08470 PF08240 Alcohol dehydrogenase GroES-like domain M1S42_08470 PF00107 Zinc-binding dehydrogenase M1S42_08480 PF01032 FecCD transport family M1S42_08485 PF00005 ABC transporter M1S42_08505 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase M1S42_08505 PF14572 Phosphoribosyl synthetase-associated domain M1S42_08510 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family M1S42_08585 PF00196 Bacterial regulatory proteins, luxR family M1S42_08590 PF01425 Amidase M1S42_08595 PF13533 Biotin-lipoyl like M1S42_08600 PF07690 Major Facilitator Superfamily M1S42_08625 PF01975 Survival protein SurE M1S42_08635 PF13291 ACT domain M1S42_08635 PF04607 Region found in RelA / SpoT proteins M1S42_08635 PF02824 TGS domain M1S42_08685 PF12146 Serine aminopeptidase, S33 M1S42_08690 PF12833 Helix-turn-helix domain M1S42_08690 PF02311 AraC-like ligand binding domain M1S42_08705 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M1S42_08705 PF00512 His Kinase A (phospho-acceptor) domain M1S42_08705 PF16527 Two-component sensor protein CpxA, periplasmic domain M1S42_08705 PF00672 HAMP domain M1S42_08710 PF00072 Response regulator receiver domain M1S42_08710 PF00486 Transcriptional regulatory protein, C terminal M1S42_08715 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion M1S42_08715 PF00529 HlyD membrane-fusion protein of T1SS M1S42_08720 PF00873 AcrB/AcrD/AcrF family M1S42_08725 PF02321 Outer membrane efflux protein M1S42_08730 PF12146 Serine aminopeptidase, S33 M1S42_08735 PF00743 Flavin-binding monooxygenase-like M1S42_08740 PF01593 Flavin containing amine oxidoreductase M1S42_08755 PF01266 FAD dependent oxidoreductase M1S42_08775 PF16970 Type-1 fimbrial protein, A M1S42_08785 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain M1S42_08785 PF02753 Pili assembly chaperone PapD, C-terminal domain M1S42_08790 PF00577 Outer membrane usher protein M1S42_08790 PF13954 PapC N-terminal domain M1S42_08790 PF13953 PapC C-terminal domain M1S42_08795 PF00419 Fimbrial protein M1S42_08805 PF00107 Zinc-binding dehydrogenase M1S42_08805 PF08240 Alcohol dehydrogenase GroES-like domain M1S42_08815 PF00199 Catalase M1S42_08830 PF13091 PLD-like domain M1S42_08845 PF01244 Membrane dipeptidase (Peptidase family M19) M1S42_08850 PF04055 Radical SAM superfamily M1S42_08850 PF13186 Iron-sulfur cluster-binding domain M1S42_08855 PF05402 Coenzyme PQQ synthesis protein D (PqqD) M1S42_08860 PF03070 TENA/THI-4/PQQC family M1S42_08865 PF12706 Beta-lactamase superfamily domain M1S42_08870 PF08042 PqqA family M1S42_08875 PF17941 Polyphosphate kinase C-terminal domain 1 M1S42_08875 PF02503 Polyphosphate kinase middle domain M1S42_08875 PF13089 Polyphosphate kinase N-terminal domain M1S42_08875 PF13090 Polyphosphate kinase C-terminal domain 2 M1S42_08890 PF00857 Isochorismatase family M1S42_08890 PF00550 Phosphopantetheine attachment site M1S42_08895 PF00106 short chain dehydrogenase M1S42_08900 PF00005 ABC transporter M1S42_08900 PF03459 TOBE domain M1S42_08905 PF00528 Binding-protein-dependent transport system inner membrane component M1S42_08915 PF03459 TOBE domain M1S42_08915 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M1S42_08920 PF00848 Ring hydroxylating alpha subunit (catalytic domain) M1S42_08920 PF00355 Rieske [2Fe-2S] domain M1S42_08925 PF00866 Ring hydroxylating beta subunit M1S42_08930 PF00970 Oxidoreductase FAD-binding domain M1S42_08930 PF00111 2Fe-2S iron-sulfur cluster binding domain M1S42_08930 PF00175 Oxidoreductase NAD-binding domain M1S42_08935 PF14525 AraC-binding-like domain M1S42_08935 PF12833 Helix-turn-helix domain M1S42_08945 PF01613 Flavin reductase like domain M1S42_08960 PF01738 Dienelactone hydrolase family M1S42_08965 PF07690 Major Facilitator Superfamily M1S42_08970 PF12833 Helix-turn-helix domain M1S42_08970 PF06719 AraC-type transcriptional regulator N-terminus M1S42_08995 PF03466 LysR substrate binding domain M1S42_08995 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M1S42_09000 PF01144 Coenzyme A transferase M1S42_09005 PF01144 Coenzyme A transferase M1S42_09010 PF02667 Short chain fatty acid transporter M1S42_09015 PF00108 Thiolase, N-terminal domain M1S42_09015 PF02803 Thiolase, C-terminal domain M1S42_09020 PF03466 LysR substrate binding domain M1S42_09020 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M1S42_09025 PF03466 LysR substrate binding domain M1S42_09025 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M1S42_09040 PF10415 Fumarase C C-terminus M1S42_09040 PF00206 Lyase M1S42_09045 PF00593 TonB dependent receptor M1S42_09045 PF07715 TonB-dependent Receptor Plug Domain M1S42_09050 PF00083 Sugar (and other) transporter M1S42_09065 PF00005 ABC transporter M1S42_09070 PF00528 Binding-protein-dependent transport system inner membrane component M1S42_09075 PF04069 Substrate binding domain of ABC-type glycine betaine transport system M1S42_09090 PF00392 Bacterial regulatory proteins, gntR family M1S42_09090 PF07702 UTRA domain M1S42_09100 PF02525 Flavodoxin-like fold M1S42_09105 PF01638 HxlR-like helix-turn-helix M1S42_09110 PF06445 GyrI-like small molecule binding domain M1S42_09110 PF12833 Helix-turn-helix domain M1S42_09125 PF01925 Sulfite exporter TauE/SafE M1S42_09140 PF04273 Putative phosphatase (DUF442) M1S42_09140 PF00753 Metallo-beta-lactamase superfamily M1S42_09145 PF02954 Bacterial regulatory protein, Fis family M1S42_09145 PF00158 Sigma-54 interaction domain M1S42_09145 PF00072 Response regulator receiver domain M1S42_09150 PF01062 Bestrophin, RFP-TM, chloride channel M1S42_09155 PF08240 Alcohol dehydrogenase GroES-like domain M1S42_09155 PF00107 Zinc-binding dehydrogenase M1S42_09160 PF00106 short chain dehydrogenase M1S42_09165 PF07992 Pyridine nucleotide-disulphide oxidoreductase M1S42_09165 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain M1S42_09170 PF02817 e3 binding domain M1S42_09170 PF00364 Biotin-requiring enzyme M1S42_09170 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) M1S42_09175 PF02780 Transketolase, C-terminal domain M1S42_09175 PF02779 Transketolase, pyrimidine binding domain M1S42_09180 PF00676 Dehydrogenase E1 component M1S42_09185 PF04055 Radical SAM superfamily M1S42_09200 PF08448 PAS fold M1S42_09200 PF00990 Diguanylate cyclase, GGDEF domain M1S42_09205 PF01264 Chorismate synthase M1S42_09210 PF05175 Methyltransferase small domain M1S42_09215 PF00291 Pyridoxal-phosphate dependent enzyme M1S42_09225 PF00004 ATPase family associated with various cellular activities (AAA) M1S42_09225 PF17862 AAA+ lid domain M1S42_09225 PF01434 Peptidase family M41 M1S42_09235 PF05166 YcgL domain M1S42_09255 PF01612 3'-5' exonuclease M1S42_09255 PF00570 HRDC domain M1S42_09260 PF13662 Toprim domain M1S42_09260 PF02132 RecR protein M1S42_09265 PF02575 YbaB/EbfC DNA-binding family M1S42_09275 PF01053 Cys/Met metabolism PLP-dependent enzyme M1S42_09280 PF00561 alpha/beta hydrolase fold M1S42_09285 PF08241 Methyltransferase domain M1S42_09315 PF01230 HIT domain M1S42_09350 PF00005 ABC transporter M1S42_09355 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion M1S42_09365 PF02684 Lipid-A-disaccharide synthetase M1S42_09370 PF07715 TonB-dependent Receptor Plug Domain M1S42_09370 PF00593 TonB dependent receptor M1S42_09390 PF01925 Sulfite exporter TauE/SafE M1S42_09395 PF00793 DAHP synthetase I family M1S42_09400 PF02654 Cobalamin-5-phosphate synthase M1S42_09415 PF02277 Phosphoribosyltransferase M1S42_09420 PF02283 Cobinamide kinase / cobinamide phosphate guanyltransferase M1S42_09430 PF13419 Haloacid dehalogenase-like hydrolase M1S42_09455 PF00593 TonB dependent receptor M1S42_09455 PF07715 TonB-dependent Receptor Plug Domain M1S42_09470 PF06276 Ferric iron reductase FhuF-like transporter M1S42_09470 PF04183 IucA / IucC family M1S42_09475 PF06276 Ferric iron reductase FhuF-like transporter M1S42_09475 PF04183 IucA / IucC family M1S42_09480 PF07690 Major Facilitator Superfamily M1S42_09485 PF13434 L-lysine 6-monooxygenase (NADPH-requiring) M1S42_09490 PF06276 Ferric iron reductase FhuF-like transporter M1S42_09490 PF04183 IucA / IucC family M1S42_09495 PF04073 Aminoacyl-tRNA editing domain M1S42_09505 PF03109 ABC1 family M1S42_09510 PF02770 Acyl-CoA dehydrogenase, middle domain M1S42_09510 PF02771 Acyl-CoA dehydrogenase, N-terminal domain M1S42_09510 PF00441 Acyl-CoA dehydrogenase, C-terminal domain M1S42_09515 PF00441 Acyl-CoA dehydrogenase, C-terminal domain M1S42_09515 PF02770 Acyl-CoA dehydrogenase, middle domain M1S42_09515 PF02771 Acyl-CoA dehydrogenase, N-terminal domain M1S42_09520 PF00487 Fatty acid desaturase M1S42_09525 PF12852 Cupin M1S42_09525 PF12833 Helix-turn-helix domain M1S42_09530 PF09312 SurA N-terminal domain M1S42_09530 PF00639 PPIC-type PPIASE domain M1S42_09535 PF00216 Bacterial DNA-binding protein M1S42_09550 PF02082 Transcriptional regulator M1S42_09555 PF00266 Aminotransferase class-V M1S42_09560 PF01592 NifU-like N terminal domain M1S42_09565 PF01521 Iron-sulphur cluster biosynthesis M1S42_09570 PF07743 HSCB C-terminal oligomerisation domain M1S42_09570 PF00226 DnaJ domain M1S42_09575 PF00012 Hsp70 protein M1S42_09580 PF00111 2Fe-2S iron-sulfur cluster binding domain M1S42_09585 PF00211 Adenylate and Guanylate cyclase catalytic domain M1S42_09595 PF00270 DEAD/DEAH box helicase M1S42_09595 PF17757 UvrB interaction domain M1S42_09595 PF02559 CarD-like/TRCF domain M1S42_09595 PF03461 TRCF domain M1S42_09595 PF00271 Helicase conserved C-terminal domain M1S42_09625 PF03737 Aldolase/RraA M1S42_09630 PF13460 NAD(P)H-binding M1S42_09635 PF01649 Ribosomal protein S20 M1S42_09645 PF00459 Inositol monophosphatase family M1S42_09660 PF00005 ABC transporter M1S42_09660 PF08352 Oligopeptide/dipeptide transporter, C-terminal region M1S42_09665 PF00528 Binding-protein-dependent transport system inner membrane component M1S42_09670 PF00528 Binding-protein-dependent transport system inner membrane component M1S42_09675 PF01432 Peptidase family M3 M1S42_09695 PF07715 TonB-dependent Receptor Plug Domain M1S42_09695 PF00593 TonB dependent receptor M1S42_09705 PF01618 MotA/TolQ/ExbB proton channel family M1S42_09710 PF02472 Biopolymer transport protein ExbD/TolR M1S42_09715 PF02472 Biopolymer transport protein ExbD/TolR M1S42_09725 PF01274 Malate synthase M1S42_09730 PF03969 AFG1-like ATPase M1S42_09740 PF00743 Flavin-binding monooxygenase-like M1S42_09750 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family M1S42_09760 PF00216 Bacterial DNA-binding protein M1S42_09765 PF00575 S1 RNA binding domain M1S42_09770 PF02224 Cytidylate kinase M1S42_09780 PF14437 MafB19-like deaminase M1S42_09790 PF03167 Uracil DNA glycosylase superfamily M1S42_09800 PF03934 Type II secretion system (T2SS), protein K M1S42_09805 PF11612 Type II secretion system (T2SS), protein J M1S42_09805 PF07963 Prokaryotic N-terminal methylation motif M1S42_09810 PF02501 Type II secretion system (T2SS), protein I M1S42_09810 PF07963 Prokaryotic N-terminal methylation motif M1S42_09825 PF01026 TatD related DNase M1S42_09835 PF09115 DNA polymerase III, delta subunit, C terminal M1S42_09840 PF02348 Cytidylyltransferase M1S42_09845 PF02606 Tetraacyldisaccharide-1-P 4'-kinase M1S42_09850 PF00664 ABC transporter transmembrane region M1S42_09850 PF00005 ABC transporter M1S42_09860 PF01618 MotA/TolQ/ExbB proton channel family M1S42_09865 PF02195 ParB-like nuclease domain M1S42_09865 PF17762 HTH domain found in ParB protein M1S42_09870 PF13614 AAA domain M1S42_09875 PF02527 rRNA small subunit methyltransferase G M1S42_09880 PF00483 Nucleotidyl transferase M1S42_09885 PF01636 Phosphotransferase enzyme family M1S42_09890 PF04453 LPS transport system D M1S42_09890 PF03968 OstA-like protein M1S42_09895 PF00639 PPIC-type PPIASE domain M1S42_09895 PF09312 SurA N-terminal domain M1S42_09900 PF01116 Fructose-bisphosphate aldolase class-II M1S42_09910 PF00162 Phosphoglycerate kinase M1S42_09920 PF02545 Maf-like protein M1S42_09925 PF08007 Cupin superfamily protein M1S42_09940 PF00375 Sodium:dicarboxylate symporter family M1S42_09945 PF06912 Protein of unknown function (DUF1275) M1S42_09950 PF09831 Uncharacterized protein conserved in bacteria (DUF2058) M1S42_09955 PF00005 ABC transporter M1S42_09955 PF00664 ABC transporter transmembrane region M1S42_09965 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term M1S42_09965 PF12833 Helix-turn-helix domain M1S42_09970 PF01597 Glycine cleavage H-protein M1S42_09975 PF02146 Sir2 family M1S42_09980 PF00474 Sodium:solute symporter family M1S42_09985 PF01037 Lrp/AsnC ligand binding domain M1S42_09990 PF14850 DNA-binding domain of Proline dehydrogenase M1S42_09990 PF18327 Proline utilization A proline dehydrogenase N-terminal domain M1S42_09990 PF00171 Aldehyde dehydrogenase family M1S42_09990 PF01619 Proline dehydrogenase M1S42_09995 PF04229 GrpB protein M1S42_10000 PF05958 tRNA (Uracil-5-)-methyltransferase M1S42_10010 PF09992 Phosphodiester glycosidase M1S42_10020 PF04264 YceI-like domain M1S42_10030 PF02779 Transketolase, pyrimidine binding domain M1S42_10030 PF02780 Transketolase, C-terminal domain M1S42_10030 PF00456 Transketolase, thiamine diphosphate binding domain M1S42_10035 PF00438 S-adenosylmethionine synthetase, N-terminal domain M1S42_10035 PF02773 S-adenosylmethionine synthetase, C-terminal domain M1S42_10035 PF02772 S-adenosylmethionine synthetase, central domain M1S42_10055 PF00905 Penicillin binding protein transpeptidase domain M1S42_10070 PF02075 Crossover junction endodeoxyribonuclease RuvC M1S42_10075 PF01256 Carbohydrate kinase M1S42_10075 PF03853 YjeF-related protein N-terminus M1S42_10080 PF08331 Domain of unknown function (DUF1730) M1S42_10085 PF06968 Biotin and Thiamin Synthesis associated domain M1S42_10085 PF04055 Radical SAM superfamily M1S42_10100 PF16970 Type-1 fimbrial protein, A M1S42_10105 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain M1S42_10105 PF02753 Pili assembly chaperone PapD, C-terminal domain M1S42_10110 PF13954 PapC N-terminal domain M1S42_10110 PF00577 Outer membrane usher protein M1S42_10110 PF13953 PapC C-terminal domain M1S42_10130 PF00892 EamA-like transporter family M1S42_10140 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin M1S42_10150 PF03466 LysR substrate binding domain M1S42_10150 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M1S42_10170 PF00440 Bacterial regulatory proteins, tetR family M1S42_10180 PF01709 Transcriptional regulator M1S42_10185 PF01037 Lrp/AsnC ligand binding domain M1S42_10200 PF00005 ABC transporter M1S42_10205 PF00528 Binding-protein-dependent transport system inner membrane component M1S42_10210 PF00528 Binding-protein-dependent transport system inner membrane component M1S42_10225 PF02771 Acyl-CoA dehydrogenase, N-terminal domain M1S42_10225 PF08028 Acyl-CoA dehydrogenase, C-terminal domain M1S42_10235 PF00296 Luciferase-like monooxygenase M1S42_10240 PF03180 NLPA lipoprotein M1S42_10245 PF03180 NLPA lipoprotein M1S42_10250 PF00005 ABC transporter M1S42_10250 PF09383 NIL domain M1S42_10255 PF00528 Binding-protein-dependent transport system inner membrane component M1S42_10260 PF01926 50S ribosome-binding GTPase M1S42_10260 PF06071 Protein of unknown function (DUF933) M1S42_10285 PF03591 AzlC protein M1S42_10290 PF05437 Branched-chain amino acid transport protein (AzlD) M1S42_10300 PF02222 ATP-grasp domain M1S42_10305 PF01909 Nucleotidyltransferase domain M1S42_10305 PF01966 HD domain M1S42_10305 PF08335 GlnD PII-uridylyltransferase M1S42_10310 PF00155 Aminotransferase class I and II M1S42_10320 PF12833 Helix-turn-helix domain M1S42_10320 PF12852 Cupin M1S42_10325 PF00255 Glutathione peroxidase M1S42_10330 PF01641 SelR domain M1S42_10335 PF00155 Aminotransferase class I and II M1S42_10340 PF00375 Sodium:dicarboxylate symporter family M1S42_10345 PF00710 Asparaginase, N-terminal M1S42_10345 PF17763 Glutaminase/Asparaginase C-terminal domain M1S42_10350 PF17657 Bacterial DNA polymerase III alpha subunit finger domain M1S42_10350 PF14579 Helix-hairpin-helix motif M1S42_10350 PF02811 PHP domain M1S42_10350 PF01336 OB-fold nucleic acid binding domain M1S42_10350 PF07733 Bacterial DNA polymerase III alpha NTPase domain M1S42_10355 PF00588 SpoU rRNA Methylase family M1S42_10360 PF00132 Bacterial transferase hexapeptide (six repeats) M1S42_10375 PF07992 Pyridine nucleotide-disulphide oxidoreductase M1S42_10375 PF13192 Thioredoxin domain M1S42_10390 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M1S42_10390 PF03466 LysR substrate binding domain M1S42_10395 PF01758 Sodium Bile acid symporter family M1S42_10400 PF01022 Bacterial regulatory protein, arsR family M1S42_10405 PF03960 ArsC family M1S42_10415 PF13382 Adenine deaminase C-terminal domain M1S42_10415 PF01979 Amidohydrolase family M1S42_10425 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M1S42_10425 PF03466 LysR substrate binding domain M1S42_10435 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin M1S42_10440 PF01177 Asp/Glu/Hydantoin racemase M1S42_10445 PF02668 Taurine catabolism dioxygenase TauD, TfdA family M1S42_10450 PF00528 Binding-protein-dependent transport system inner membrane component M1S42_10455 PF00005 ABC transporter M1S42_10460 PF04069 Substrate binding domain of ABC-type glycine betaine transport system M1S42_10470 PF00083 Sugar (and other) transporter M1S42_10475 PF00296 Luciferase-like monooxygenase M1S42_10480 PF08028 Acyl-CoA dehydrogenase, C-terminal domain M1S42_10480 PF02770 Acyl-CoA dehydrogenase, middle domain M1S42_10480 PF02771 Acyl-CoA dehydrogenase, N-terminal domain M1S42_10495 PF01654 Cytochrome bd terminal oxidase subunit I M1S42_10500 PF02322 Cytochrome bd terminal oxidase subunit II M1S42_10510 PF00155 Aminotransferase class I and II M1S42_10510 PF00392 Bacterial regulatory proteins, gntR family M1S42_10515 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M1S42_10515 PF03466 LysR substrate binding domain M1S42_10530 PF00698 Acyl transferase domain M1S42_10535 PF10620 Phosphoribosyl-dephospho-CoA transferase MdcG M1S42_10545 PF01039 Carboxyl transferase domain M1S42_10550 PF06857 Malonate decarboxylase delta subunit (MdcD) M1S42_10555 PF01874 ATP:dephospho-CoA triphosphoribosyl transferase M1S42_10560 PF16957 Malonate decarboxylase, alpha subunit, transporter M1S42_10565 PF07690 Major Facilitator Superfamily M1S42_10580 PF00392 Bacterial regulatory proteins, gntR family M1S42_10580 PF00155 Aminotransferase class I and II M1S42_10585 PF04172 LrgB-like family M1S42_10590 PF03788 LrgA family M1S42_10595 PF03466 LysR substrate binding domain M1S42_10595 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M1S42_10600 PF14834 Glutathione S-transferase, C-terminal domain M1S42_10600 PF02798 Glutathione S-transferase, N-terminal domain M1S42_10605 PF02798 Glutathione S-transferase, N-terminal domain M1S42_10610 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M1S42_10610 PF03466 LysR substrate binding domain M1S42_10620 PF00581 Rhodanese-like domain M1S42_10625 PF00132 Bacterial transferase hexapeptide (six repeats) M1S42_10635 PF00266 Aminotransferase class-V M1S42_10645 PF01810 LysE type translocator M1S42_10650 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M1S42_10650 PF03466 LysR substrate binding domain M1S42_10660 PF00497 Bacterial extracellular solute-binding proteins, family 3 M1S42_10665 PF00497 Bacterial extracellular solute-binding proteins, family 3 M1S42_10670 PF00005 ABC transporter M1S42_10675 PF00528 Binding-protein-dependent transport system inner membrane component M1S42_10680 PF00528 Binding-protein-dependent transport system inner membrane component M1S42_10695 PF00072 Response regulator receiver domain M1S42_10700 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M1S42_10700 PF00512 His Kinase A (phospho-acceptor) domain M1S42_10700 PF09308 LuxQ, periplasmic M1S42_10700 PF00072 Response regulator receiver domain M1S42_10710 PF01037 Lrp/AsnC ligand binding domain M1S42_10710 PF13404 AsnC-type helix-turn-helix domain M1S42_10720 PF00717 Peptidase S24-like M1S42_10745 PF18011 C-terminal domain found in long catalases M1S42_10745 PF06628 Catalase-related immune-responsive M1S42_10745 PF00199 Catalase M1S42_10755 PF18146 Damage-inducible protein CinA KH domain M1S42_10755 PF02464 Competence-damaged protein M1S42_10755 PF00994 Probable molybdopterin binding domain M1S42_10790 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M1S42_10790 PF03466 LysR substrate binding domain M1S42_10815 PF00501 AMP-binding enzyme M1S42_10815 PF13193 AMP-binding enzyme C-terminal domain M1S42_10820 PF00440 Bacterial regulatory proteins, tetR family M1S42_10825 PF00441 Acyl-CoA dehydrogenase, C-terminal domain M1S42_10825 PF02770 Acyl-CoA dehydrogenase, middle domain M1S42_10825 PF02771 Acyl-CoA dehydrogenase, N-terminal domain M1S42_10830 PF01039 Carboxyl transferase domain M1S42_10835 PF00378 Enoyl-CoA hydratase/isomerase M1S42_10840 PF18140 Propionyl-coenzyme A carboxylase BT domain M1S42_10840 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain M1S42_10840 PF02785 Biotin carboxylase C-terminal domain M1S42_10840 PF00289 Biotin carboxylase, N-terminal domain M1S42_10840 PF00364 Biotin-requiring enzyme M1S42_10845 PF00682 HMGL-like M1S42_10850 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M1S42_10850 PF03466 LysR substrate binding domain M1S42_10865 PF12806 Acetyl-CoA dehydrogenase C-terminal like M1S42_10865 PF02771 Acyl-CoA dehydrogenase, N-terminal domain M1S42_10865 PF00441 Acyl-CoA dehydrogenase, C-terminal domain M1S42_10865 PF02770 Acyl-CoA dehydrogenase, middle domain M1S42_10875 PF07690 Major Facilitator Superfamily M1S42_10885 PF01144 Coenzyme A transferase M1S42_10890 PF01144 Coenzyme A transferase M1S42_10895 PF07690 Major Facilitator Superfamily M1S42_10900 PF02771 Acyl-CoA dehydrogenase, N-terminal domain M1S42_10900 PF00441 Acyl-CoA dehydrogenase, C-terminal domain M1S42_10900 PF02770 Acyl-CoA dehydrogenase, middle domain M1S42_10905 PF00378 Enoyl-CoA hydratase/isomerase M1S42_10915 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain M1S42_10915 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain M1S42_10915 PF18321 3-hydroxybutyryl-CoA dehydrogenase reduced Rossmann-fold domain M1S42_10920 PF02803 Thiolase, C-terminal domain M1S42_10920 PF00108 Thiolase, N-terminal domain M1S42_10925 PF09339 IclR helix-turn-helix domain M1S42_10930 PF07690 Major Facilitator Superfamily M1S42_10935 PF03060 Nitronate monooxygenase M1S42_10940 PF00378 Enoyl-CoA hydratase/isomerase M1S42_10945 PF09339 IclR helix-turn-helix domain M1S42_10950 PF02515 CoA-transferase family III M1S42_10955 PF02771 Acyl-CoA dehydrogenase, N-terminal domain M1S42_10955 PF02770 Acyl-CoA dehydrogenase, middle domain M1S42_10955 PF00441 Acyl-CoA dehydrogenase, C-terminal domain M1S42_10960 PF07690 Major Facilitator Superfamily M1S42_10965 PF13419 Haloacid dehalogenase-like hydrolase M1S42_10970 PF00266 Aminotransferase class-V M1S42_10975 PF01266 FAD dependent oxidoreductase M1S42_10980 PF00528 Binding-protein-dependent transport system inner membrane component M1S42_10985 PF00005 ABC transporter M1S42_10985 PF08402 TOBE domain M1S42_10995 PF00392 Bacterial regulatory proteins, gntR family M1S42_10995 PF07702 UTRA domain M1S42_11000 PF01494 FAD binding domain M1S42_11005 PF01614 Bacterial transcriptional regulator M1S42_11005 PF09339 IclR helix-turn-helix domain M1S42_11010 PF02525 Flavodoxin-like fold M1S42_11015 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M1S42_11015 PF03466 LysR substrate binding domain M1S42_11020 PF02627 Carboxymuconolactone decarboxylase family M1S42_11025 PF00171 Aldehyde dehydrogenase family M1S42_11035 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin M1S42_11045 PF00171 Aldehyde dehydrogenase family M1S42_11050 PF00296 Luciferase-like monooxygenase M1S42_11055 PF01613 Flavin reductase like domain M1S42_11060 PF12697 Alpha/beta hydrolase family M1S42_11080 PF01292 Prokaryotic cytochrome b561 M1S42_11085 PF00199 Catalase M1S42_11120 PF03061 Thioesterase superfamily M1S42_11125 PF00132 Bacterial transferase hexapeptide (six repeats) M1S42_11130 PF07848 PaaX-like protein M1S42_11130 PF08223 PaaX-like protein C-terminal domain M1S42_11135 PF00501 AMP-binding enzyme M1S42_11135 PF14535 AMP-binding enzyme C-terminal domain M1S42_11140 PF00108 Thiolase, N-terminal domain M1S42_11140 PF02803 Thiolase, C-terminal domain M1S42_11145 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain M1S42_11145 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain M1S42_11145 PF18321 3-hydroxybutyryl-CoA dehydrogenase reduced Rossmann-fold domain M1S42_11150 PF00378 Enoyl-CoA hydratase/isomerase M1S42_11155 PF00378 Enoyl-CoA hydratase/isomerase M1S42_11160 PF00175 Oxidoreductase NAD-binding domain M1S42_11160 PF00970 Oxidoreductase FAD-binding domain M1S42_11160 PF00111 2Fe-2S iron-sulfur cluster binding domain M1S42_11165 PF01883 Iron-sulfur cluster assembly protein M1S42_11170 PF05138 Phenylacetic acid catabolic protein M1S42_11175 PF06243 Phenylacetic acid degradation B M1S42_11180 PF05138 Phenylacetic acid catabolic protein M1S42_11185 PF00171 Aldehyde dehydrogenase family M1S42_11185 PF01575 MaoC like domain M1S42_11190 PF03313 Serine dehydratase alpha chain M1S42_11190 PF03315 Serine dehydratase beta chain M1S42_11195 PF13520 Amino acid permease M1S42_11200 PF00171 Aldehyde dehydrogenase family M1S42_11205 PF00083 Sugar (and other) transporter M1S42_11215 PF07992 Pyridine nucleotide-disulphide oxidoreductase M1S42_11215 PF04324 BFD-like [2Fe-2S] binding domain M1S42_11225 PF01266 FAD dependent oxidoreductase M1S42_11230 PF05544 Proline racemase M1S42_11235 PF00392 Bacterial regulatory proteins, gntR family M1S42_11245 PF00701 Dihydrodipicolinate synthetase family M1S42_11255 PF00376 MerR family regulatory protein M1S42_11255 PF09278 MerR, DNA binding M1S42_11270 PF02677 Epoxyqueuosine reductase QueH M1S42_11285 PF07690 Major Facilitator Superfamily M1S42_11290 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region M1S42_11300 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M1S42_11300 PF03466 LysR substrate binding domain M1S42_11320 PF05936 Bacterial Type VI secretion, VC_A0110, EvfL, ImpJ, VasE M1S42_11325 PF06812 ImpA, N-terminal, type VI secretion system M1S42_11330 PF00004 ATPase family associated with various cellular activities (AAA) M1S42_11330 PF07724 AAA domain (Cdc48 subfamily) M1S42_11330 PF17871 AAA lid domain M1S42_11330 PF10431 C-terminal, D2-small domain, of ClpB protein M1S42_11345 PF00691 OmpA family M1S42_11345 PF01389 OmpA-like transmembrane domain M1S42_11355 PF06761 Intracellular multiplication and human macrophage-killing M1S42_11355 PF14331 ImcF-related N-terminal domain M1S42_11355 PF06744 Type VI secretion protein IcmF C-terminal M1S42_11370 PF05947 Type VI secretion system, TssF M1S42_11385 PF05943 Type VI secretion protein, EvpB/VC_A0108, tail sheath M1S42_11410 PF00005 ABC transporter M1S42_11415 PF00497 Bacterial extracellular solute-binding proteins, family 3 M1S42_11420 PF01425 Amidase M1S42_11425 PF01402 Ribbon-helix-helix protein, copG family M1S42_11425 PF08753 NikR C terminal nickel binding domain M1S42_11445 PF02525 Flavodoxin-like fold M1S42_11450 PF02785 Biotin carboxylase C-terminal domain M1S42_11450 PF00289 Biotin carboxylase, N-terminal domain M1S42_11450 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain M1S42_11465 PF08240 Alcohol dehydrogenase GroES-like domain M1S42_11465 PF13823 Alcohol dehydrogenase GroES-associated M1S42_11465 PF00107 Zinc-binding dehydrogenase M1S42_11475 PF00440 Bacterial regulatory proteins, tetR family M1S42_11495 PF00654 Voltage gated chloride channel M1S42_11500 PF02785 Biotin carboxylase C-terminal domain M1S42_11500 PF00289 Biotin carboxylase, N-terminal domain M1S42_11500 PF00364 Biotin-requiring enzyme M1S42_11500 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain M1S42_11510 PF07286 Protein of unknown function (DUF1445) M1S42_11515 PF03746 LamB/YcsF family M1S42_11520 PF01566 Natural resistance-associated macrophage protein M1S42_11525 PF03466 LysR substrate binding domain M1S42_11525 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M1S42_11540 PF05593 RHS Repeat M1S42_11540 PF03527 RHS protein M1S42_11545 PF13296 Putative type VI secretion system Rhs element Vgr M1S42_11545 PF04717 Type VI secretion system, phage-baseplate injector M1S42_11545 PF10106 Uncharacterized protein conserved in bacteria (DUF2345) M1S42_11555 PF13419 Haloacid dehalogenase-like hydrolase M1S42_11575 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain M1S42_11575 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain M1S42_11595 PF07690 Major Facilitator Superfamily M1S42_11610 PF03279 Bacterial lipid A biosynthesis acyltransferase M1S42_11615 PF00563 EAL domain M1S42_11615 PF03707 Bacterial signalling protein N terminal repeat M1S42_11615 PF00990 Diguanylate cyclase, GGDEF domain M1S42_11620 PF00892 EamA-like transporter family M1S42_11625 PF01037 Lrp/AsnC ligand binding domain M1S42_11630 PF01624 MutS domain I M1S42_11630 PF05188 MutS domain II M1S42_11630 PF05192 MutS domain III M1S42_11630 PF00488 MutS domain V M1S42_11630 PF05190 MutS family domain IV M1S42_11640 PF00037 4Fe-4S binding domain M1S42_11640 PF11953 Domain of unknown function (DUF3470) M1S42_11650 PF01596 O-methyltransferase M1S42_11660 PF00132 Bacterial transferase hexapeptide (six repeats) M1S42_11665 PF01205 Uncharacterized protein family UPF0029 M1S42_11675 PF03412 Peptidase C39 family M1S42_11675 PF00664 ABC transporter transmembrane region M1S42_11675 PF00005 ABC transporter M1S42_11680 PF02321 Outer membrane efflux protein M1S42_11685 PF12399 Branched-chain amino acid ATP-binding cassette transporter M1S42_11685 PF00005 ABC transporter M1S42_11690 PF03968 OstA-like protein M1S42_11705 PF00571 CBS domain M1S42_11705 PF01380 SIS domain M1S42_11710 PF09190 DALR domain M1S42_11710 PF01406 tRNA synthetases class I (C) catalytic domain M1S42_11735 PF01638 HxlR-like helix-turn-helix M1S42_11740 PF07690 Major Facilitator Superfamily M1S42_11765 PF14748 Pyrroline-5-carboxylate reductase dimerisation M1S42_11765 PF03807 NADP oxidoreductase coenzyme F420-dependent M1S42_11775 PF00313 'Cold-shock' DNA-binding domain M1S42_11780 PF01810 LysE type translocator M1S42_11810 PF02601 Exonuclease VII, large subunit M1S42_11810 PF13742 OB-fold nucleic acid binding domain M1S42_11845 PF00376 MerR family regulatory protein M1S42_11845 PF09278 MerR, DNA binding M1S42_11850 PF00403 Heavy-metal-associated domain M1S42_11855 PF00403 Heavy-metal-associated domain M1S42_11860 PF03466 LysR substrate binding domain M1S42_11860 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M1S42_11870 PF00355 Rieske [2Fe-2S] domain M1S42_11870 PF00848 Ring hydroxylating alpha subunit (catalytic domain) M1S42_11880 PF00970 Oxidoreductase FAD-binding domain M1S42_11880 PF00111 2Fe-2S iron-sulfur cluster binding domain M1S42_11880 PF00175 Oxidoreductase NAD-binding domain M1S42_11885 PF00106 short chain dehydrogenase M1S42_11890 PF03594 Benzoate membrane transport protein M1S42_11895 PF07690 Major Facilitator Superfamily M1S42_11905 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III M1S42_11905 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal M1S42_11910 PF00270 DEAD/DEAH box helicase M1S42_11910 PF04408 Helicase associated domain (HA2) M1S42_11910 PF00271 Helicase conserved C-terminal domain M1S42_11910 PF11898 Domain of unknown function (DUF3418) M1S42_11910 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold M1S42_11915 PF10417 C-terminal domain of 1-Cys peroxiredoxin M1S42_11915 PF00578 AhpC/TSA family M1S42_11935 PF07992 Pyridine nucleotide-disulphide oxidoreductase M1S42_11935 PF13192 Thioredoxin domain M1S42_11945 PF00043 Glutathione S-transferase, C-terminal domain M1S42_11945 PF02798 Glutathione S-transferase, N-terminal domain M1S42_11955 PF02390 Putative methyltransferase M1S42_11960 PF00043 Glutathione S-transferase, C-terminal domain M1S42_11960 PF13417 Glutathione S-transferase, N-terminal domain M1S42_11970 PF13488 Glycine zipper M1S42_11970 PF00691 OmpA family M1S42_11975 PF01979 Amidohydrolase family M1S42_11980 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain M1S42_11980 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain M1S42_11990 PF10672 S-adenosylmethionine-dependent methyltransferase M1S42_11990 PF02926 THUMP domain M1S42_11990 PF01170 Putative RNA methylase family UPF0020 M1S42_12005 PF17871 AAA lid domain M1S42_12005 PF00004 ATPase family associated with various cellular activities (AAA) M1S42_12005 PF10431 C-terminal, D2-small domain, of ClpB protein M1S42_12005 PF02861 Clp amino terminal domain, pathogenicity island component M1S42_12005 PF07724 AAA domain (Cdc48 subfamily) M1S42_12020 PF02566 OsmC-like protein M1S42_12030 PF00027 Cyclic nucleotide-binding domain M1S42_12030 PF13545 Crp-like helix-turn-helix domain M1S42_12040 PF00248 Aldo/keto reductase family M1S42_12055 PF00709 Adenylosuccinate synthetase M1S42_12060 PF13393 Histidyl-tRNA synthetase M1S42_12065 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain M1S42_12065 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain M1S42_12070 PF02272 DHHA1 domain M1S42_12070 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain M1S42_12070 PF01411 tRNA synthetases class II (A) M1S42_12075 PF13840 ACT domain M1S42_12075 PF01842 ACT domain M1S42_12075 PF00696 Amino acid kinase family M1S42_12080 PF02599 Global regulator protein family M1S42_12085 PF01351 Ribonuclease HII M1S42_12095 PF01292 Prokaryotic cytochrome b561 M1S42_12100 PF00962 Adenosine/AMP deaminase M1S42_12105 PF00860 Permease family M1S42_12115 PF00743 Flavin-binding monooxygenase-like M1S42_12120 PF00106 short chain dehydrogenase M1S42_12130 PF17954 Quercetinase C-terminal cupin domain M1S42_12130 PF02678 Pirin M1S42_12135 PF00440 Bacterial regulatory proteins, tetR family M1S42_12135 PF17932 Tetracyclin repressor-like, C-terminal domain M1S42_12150 PF13610 DDE domain M1S42_12155 PF01817 Chorismate mutase type II M1S42_12165 PF00106 short chain dehydrogenase M1S42_12175 PF01433 Peptidase family M1 domain M1S42_12175 PF11940 Domain of unknown function (DUF3458) Ig-like fold M1S42_12175 PF17432 Domain of unknown function (DUF3458_C) ARM repeats M1S42_12190 PF02110 Hydroxyethylthiazole kinase family M1S42_12195 PF06445 GyrI-like small molecule binding domain M1S42_12205 PF14493 Helix-turn-helix domain M1S42_12205 PF05970 PIF1-like helicase M1S42_12210 PF00465 Iron-containing alcohol dehydrogenase M1S42_12225 PF00171 Aldehyde dehydrogenase family M1S42_12230 PF13520 Amino acid permease M1S42_12235 PF06751 Ethanolamine ammonia lyase large subunit (EutB) M1S42_12240 PF05985 Ethanolamine ammonia-lyase light chain (EutC) M1S42_12245 PF00958 GMP synthase C terminal domain M1S42_12245 PF02540 NAD synthase M1S42_12245 PF00117 Glutamine amidotransferase class-I M1S42_12250 PF00749 tRNA synthetases class I (E and Q), catalytic domain M1S42_12250 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain M1S42_12255 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD M1S42_12260 PF00149 Calcineurin-like phosphoesterase M1S42_12270 PF00881 Nitroreductase family M1S42_12280 PF17209 Hfq protein M1S42_12290 PF01119 DNA mismatch repair protein, C-terminal domain M1S42_12290 PF08676 MutL C terminal dimerisation domain M1S42_12295 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE M1S42_12300 PF01479 S4 domain M1S42_12300 PF00849 RNA pseudouridylate synthase M1S42_12315 PF00849 RNA pseudouridylate synthase M1S42_12315 PF01479 S4 domain M1S42_12325 PF04284 Protein of unknown function (DUF441) M1S42_12330 PF03466 LysR substrate binding domain M1S42_12330 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M1S42_12345 PF07690 Major Facilitator Superfamily M1S42_12350 PF00027 Cyclic nucleotide-binding domain M1S42_12350 PF00520 Ion transport protein M1S42_12360 PF06434 Aconitate hydratase 2 N-terminus M1S42_12360 PF00330 Aconitase family (aconitate hydratase) M1S42_12360 PF11791 Aconitate B N-terminal domain M1S42_12375 PF01103 Surface antigen M1S42_12375 PF07244 Surface antigen variable number repeat M1S42_12375 PF17243 POTRA domain TamA domain 1 M1S42_12380 PF07690 Major Facilitator Superfamily M1S42_12385 PF03232 Ubiquinone biosynthesis protein COQ7 M1S42_12395 PF00120 Glutamine synthetase, catalytic domain M1S42_12400 PF00072 Response regulator receiver domain M1S42_12400 PF00486 Transcriptional regulatory protein, C terminal M1S42_12405 PF02702 Osmosensitive K+ channel His kinase sensor domain M1S42_12405 PF00512 His Kinase A (phospho-acceptor) domain M1S42_12405 PF13493 Domain of unknown function (DUF4118) M1S42_12405 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M1S42_12410 PF02669 K+-transporting ATPase, c chain M1S42_12420 PF03814 Potassium-transporting ATPase A subunit M1S42_12435 PF03109 ABC1 family M1S42_12440 PF00899 ThiF family M1S42_12445 PF01613 Flavin reductase like domain M1S42_12450 PF13193 AMP-binding enzyme C-terminal domain M1S42_12450 PF00501 AMP-binding enzyme M1S42_12455 PF02771 Acyl-CoA dehydrogenase, N-terminal domain M1S42_12455 PF02770 Acyl-CoA dehydrogenase, middle domain M1S42_12455 PF00441 Acyl-CoA dehydrogenase, C-terminal domain M1S42_12460 PF00106 short chain dehydrogenase M1S42_12465 PF12833 Helix-turn-helix domain M1S42_12470 PF09084 NMT1/THI5 like M1S42_12475 PF00528 Binding-protein-dependent transport system inner membrane component M1S42_12480 PF13847 Methyltransferase domain M1S42_12480 PF17827 PrmC N-terminal domain M1S42_12485 PF03462 PCRF domain M1S42_12485 PF00472 RF-1 domain M1S42_12495 PF03466 LysR substrate binding domain M1S42_12495 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M1S42_12510 PF00296 Luciferase-like monooxygenase M1S42_12520 PF13994 PgaD-like protein M1S42_12525 PF00535 Glycosyl transferase family 2 M1S42_12530 PF14883 Hypothetical glycosyl hydrolase family 13 M1S42_12530 PF01522 Polysaccharide deacetylase M1S42_12540 PF03618 Kinase/pyrophosphorylase M1S42_12545 PF02896 PEP-utilising enzyme, TIM barrel domain M1S42_12545 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain M1S42_12545 PF00391 PEP-utilising enzyme, mobile domain M1S42_12555 PF06481 COX Aromatic Rich Motif M1S42_12555 PF00116 Cytochrome C oxidase subunit II, periplasmic domain M1S42_12560 PF00115 Cytochrome C and Quinol oxidase polypeptide I M1S42_12565 PF00510 Cytochrome c oxidase subunit III M1S42_12570 PF03626 Prokaryotic Cytochrome C oxidase subunit IV M1S42_12575 PF01040 UbiA prenyltransferase family M1S42_12580 PF01250 Ribosomal protein S6 M1S42_12585 PF01084 Ribosomal protein S18 M1S42_12590 PF01281 Ribosomal protein L9, N-terminal domain M1S42_12590 PF03948 Ribosomal protein L9, C-terminal domain M1S42_12595 PF00772 DnaB-like helicase N terminal domain M1S42_12595 PF03796 DnaB-like helicase C terminal domain M1S42_12600 PF00842 Alanine racemase, C-terminal domain M1S42_12600 PF01168 Alanine racemase, N-terminal domain M1S42_12610 PF08379 Bacterial transglutaminase-like N-terminal region M1S42_12610 PF01841 Transglutaminase-like superfamily M1S42_12620 PF14403 Circularly permuted ATP-grasp type 2 M1S42_12630 PF13932 GidA associated domain M1S42_12630 PF01134 Glucose inhibited division protein A M1S42_12650 PF02954 Bacterial regulatory protein, Fis family M1S42_12655 PF01808 AICARFT/IMPCHase bienzyme M1S42_12655 PF02142 MGS-like domain M1S42_12660 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain M1S42_12660 PF02843 Phosphoribosylglycinamide synthetase, C domain M1S42_12660 PF02844 Phosphoribosylglycinamide synthetase, N domain M1S42_12665 PF03180 NLPA lipoprotein M1S42_12670 PF09383 NIL domain M1S42_12670 PF00005 ABC transporter M1S42_12675 PF00528 Binding-protein-dependent transport system inner membrane component M1S42_12680 PF00753 Metallo-beta-lactamase superfamily M1S42_12680 PF16123 Hydroxyacylglutathione hydrolase C-terminus M1S42_12690 PF00375 Sodium:dicarboxylate symporter family M1S42_12715 PF07729 FCD domain M1S42_12715 PF00392 Bacterial regulatory proteins, gntR family M1S42_12725 PF00324 Amino acid permease M1S42_12730 PF01266 FAD dependent oxidoreductase M1S42_12735 PF00324 Amino acid permease M1S42_12775 PF03527 RHS protein M1S42_12775 PF05593 RHS Repeat M1S42_12800 PF03180 NLPA lipoprotein M1S42_12805 PF05987 Bacterial protein of unknown function (DUF898) M1S42_12820 PF07992 Pyridine nucleotide-disulphide oxidoreductase M1S42_12820 PF00724 NADH:flavin oxidoreductase / NADH oxidase family M1S42_12825 PF00764 Arginosuccinate synthase M1S42_12830 PF01590 GAF domain M1S42_12830 PF00990 Diguanylate cyclase, GGDEF domain M1S42_12830 PF00360 Phytochrome region M1S42_12830 PF00563 EAL domain M1S42_12835 PF01979 Amidohydrolase family M1S42_12840 PF00929 Exonuclease M1S42_12850 PF00593 TonB dependent receptor M1S42_12850 PF07715 TonB-dependent Receptor Plug Domain M1S42_12855 PF00724 NADH:flavin oxidoreductase / NADH oxidase family M1S42_12855 PF07992 Pyridine nucleotide-disulphide oxidoreductase M1S42_12860 PF00005 ABC transporter M1S42_12860 PF08352 Oligopeptide/dipeptide transporter, C-terminal region M1S42_12865 PF00528 Binding-protein-dependent transport system inner membrane component M1S42_12865 PF12911 N-terminal TM domain of oligopeptide transport permease C M1S42_12870 PF00528 Binding-protein-dependent transport system inner membrane component M1S42_12875 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle M1S42_12880 PF01464 Transglycosylase SLT domain M1S42_12880 PF01476 LysM domain M1S42_12880 PF01464 Transglycosylase SLT domain M1S42_12880 PF01476 LysM domain M1S42_12885 PF00929 Exonuclease M1S42_12895 PF00293 NUDIX domain M1S42_12895 PF09297 NADH pyrophosphatase zinc ribbon domain M1S42_12905 PF04972 BON domain M1S42_12910 PF02021 Uncharacterised protein family UPF0102 M1S42_12915 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases M1S42_12925 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M1S42_12925 PF03466 LysR substrate binding domain M1S42_12930 PF01810 LysE type translocator M1S42_12940 PF13411 MerR HTH family regulatory protein M1S42_12950 PF01494 FAD binding domain M1S42_12955 PF01494 FAD binding domain M1S42_12960 PF05195 Aminopeptidase P, N-terminal domain M1S42_12960 PF00557 Metallopeptidase family M24 M1S42_13045 PF01464 Transglycosylase SLT domain M1S42_13045 PF10145 Phage-related minor tail protein M1S42_13045 PF01551 Peptidase family M23 M1S42_13105 PF04860 Phage portal protein M1S42_13205 PF03796 DnaB-like helicase C terminal domain M1S42_13205 PF00772 DnaB-like helicase N terminal domain M1S42_13220 PF00717 Peptidase S24-like M1S42_13220 PF01726 LexA DNA binding domain M1S42_13275 PF00884 Sulfatase M1S42_13275 PF08019 Phosphoethanolamine transferase EptA/EptB M1S42_13320 PF01551 Peptidase family M23 M1S42_13320 PF08525 Opacity-associated protein A N-terminal motif M1S42_13320 PF01476 LysM domain M1S42_13645 PF01812 5-formyltetrahydrofolate cyclo-ligase family M1S42_13650 PF00691 OmpA family M1S42_13650 PF04355 SmpA / OmlA family M1S42_13655 PF13018 Extended Signal Peptide of Type V secretion system M1S42_13655 PF03895 YadA-like membrane anchor domain M1S42_13655 PF05662 Coiled stalk of trimeric autotransporter adhesin M1S42_13655 PF05658 Head domain of trimeric autotransporter adhesin M1S42_13660 PF00004 ATPase family associated with various cellular activities (AAA) M1S42_13660 PF05362 Lon protease (S16) C-terminal proteolytic domain M1S42_13660 PF02190 ATP-dependent protease La (LON) substrate-binding domain M1S42_13665 PF02590 Predicted SPOUT methyltransferase M1S42_13670 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase M1S42_13680 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain M1S42_13680 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase M1S42_13685 PF04060 Putative Fe-S cluster M1S42_13690 PF10576 Iron-sulfur binding domain of endonuclease III M1S42_13690 PF00730 HhH-GPD superfamily base excision DNA repair protein M1S42_13690 PF00633 Helix-hairpin-helix motif M1S42_13700 PF05191 Adenylate kinase, active site lid M1S42_13715 PF03717 Penicillin-binding Protein dimerisation domain M1S42_13715 PF00905 Penicillin binding protein transpeptidase domain M1S42_13730 PF02492 CobW/HypB/UreG, nucleotide-binding domain M1S42_13735 PF01730 UreF M1S42_13740 PF05194 UreE urease accessory protein, C-terminal domain M1S42_13740 PF02814 UreE urease accessory protein, N-terminal domain M1S42_13745 PF01979 Amidohydrolase family M1S42_13745 PF00449 Urease alpha-subunit, N-terminal domain M1S42_13750 PF00699 Urease beta subunit M1S42_13755 PF00547 Urease, gamma subunit M1S42_13760 PF01774 UreD urease accessory protein M1S42_13775 PF00463 Isocitrate lyase family M1S42_13780 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M1S42_13780 PF03466 LysR substrate binding domain M1S42_13785 PF00571 CBS domain M1S42_13785 PF03471 Transporter associated domain M1S42_13785 PF01595 Cyclin M transmembrane N-terminal domain M1S42_13790 PF03600 Citrate transporter M1S42_13805 PF00009 Elongation factor Tu GTP binding domain M1S42_13810 PF01507 Phosphoadenosine phosphosulfate reductase family M1S42_13820 PF14052 Capsule assembly protein Wzi M1S42_13825 PF01336 OB-fold nucleic acid binding domain M1S42_13825 PF00152 tRNA synthetases class II (D, K and N) M1S42_13840 PF00301 Rubredoxin M1S42_13845 PF18113 Rubredoxin binding C-terminal domain M1S42_13845 PF07992 Pyridine nucleotide-disulphide oxidoreductase M1S42_13850 PF00561 alpha/beta hydrolase fold M1S42_13855 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M1S42_13855 PF03466 LysR substrate binding domain M1S42_13865 PF17941 Polyphosphate kinase C-terminal domain 1 M1S42_13865 PF13090 Polyphosphate kinase C-terminal domain 2 M1S42_13865 PF13089 Polyphosphate kinase N-terminal domain M1S42_13865 PF02503 Polyphosphate kinase middle domain M1S42_13870 PF00912 Transglycosylase M1S42_13875 PF01694 Rhomboid family M1S42_13885 PF00005 ABC transporter M1S42_13890 PF13472 GDSL-like Lipase/Acylhydrolase family M1S42_13895 PF00484 Carbonic anhydrase M1S42_13900 PF00561 alpha/beta hydrolase fold M1S42_13910 PF00593 TonB dependent receptor M1S42_13910 PF07715 TonB-dependent Receptor Plug Domain M1S42_13915 PF01521 Iron-sulphur cluster biosynthesis M1S42_13915 PF01106 NifU-like domain M1S42_13925 PF00884 Sulfatase M1S42_13930 PF03781 Sulfatase-modifying factor enzyme 1 M1S42_13945 PF00291 Pyridoxal-phosphate dependent enzyme M1S42_13950 PF01384 Phosphate transporter family M1S42_13955 PF00809 Pterin binding enzyme M1S42_13955 PF02574 Homocysteine S-methyltransferase M1S42_13955 PF02607 B12 binding domain M1S42_13955 PF02310 B12 binding domain M1S42_13955 PF02965 Vitamin B12 dependent methionine synthase, activation domain M1S42_13960 PF02779 Transketolase, pyrimidine binding domain M1S42_13960 PF02780 Transketolase, C-terminal domain M1S42_13965 PF00456 Transketolase, thiamine diphosphate binding domain M1S42_13970 PF07690 Major Facilitator Superfamily M1S42_13980 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M1S42_13980 PF03466 LysR substrate binding domain M1S42_13990 PF01263 Aldose 1-epimerase M1S42_13995 PF07690 Major Facilitator Superfamily M1S42_14000 PF02311 AraC-like ligand binding domain M1S42_14000 PF12833 Helix-turn-helix domain M1S42_14010 PF01327 Polypeptide deformylase M1S42_14015 PF07690 Major Facilitator Superfamily M1S42_14025 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain M1S42_14025 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain M1S42_14025 PF00205 Thiamine pyrophosphate enzyme, central domain M1S42_14030 PF00171 Aldehyde dehydrogenase family M1S42_14035 PF01958 Domain of unknown function DUF108 M1S42_14035 PF03447 Homoserine dehydrogenase, NAD binding domain M1S42_14045 PF12697 Alpha/beta hydrolase family M1S42_14055 PF07690 Major Facilitator Superfamily M1S42_14060 PF07992 Pyridine nucleotide-disulphide oxidoreductase M1S42_14060 PF14759 Reductase C-terminal M1S42_14065 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily M1S42_14075 PF00355 Rieske [2Fe-2S] domain M1S42_14085 PF00355 Rieske [2Fe-2S] domain M1S42_14090 PF09339 IclR helix-turn-helix domain M1S42_14090 PF01614 Bacterial transcriptional regulator M1S42_14115 PF10544 T5orf172 domain M1S42_14120 PF13614 AAA domain M1S42_14140 PF00905 Penicillin binding protein transpeptidase domain M1S42_14220 PF02768 DNA polymerase III beta subunit, C-terminal domain M1S42_14220 PF00712 DNA polymerase III beta subunit, N-terminal domain M1S42_14220 PF02767 DNA polymerase III beta subunit, central domain M1S42_14260 PF05016 ParE toxin of type II toxin-antitoxin system, parDE M1S42_14410 PF07007 Lysozyme inhibitor LprI M1S42_14455 PF01695 IstB-like ATP binding protein M1S42_14465 PF00145 C-5 cytosine-specific DNA methylase M1S42_14510 PF01381 Helix-turn-helix M1S42_14510 PF00717 Peptidase S24-like M1S42_14545 PF00929 Exonuclease M1S42_14620 PF07690 Major Facilitator Superfamily M1S42_14625 PF13533 Biotin-lipoyl like M1S42_14630 PF03061 Thioesterase superfamily M1S42_14635 PF00490 Delta-aminolevulinic acid dehydratase M1S42_14640 PF01266 FAD dependent oxidoreductase M1S42_14645 PF01370 NAD dependent epimerase/dehydratase family M1S42_14645 PF08338 Domain of unknown function (DUF1731) M1S42_14665 PF00149 Calcineurin-like phosphoesterase M1S42_14665 PF12320 Type 5 capsule protein repressor C-terminal domain M1S42_14675 PF01168 Alanine racemase, N-terminal domain M1S42_14680 PF00437 Type II/IV secretion system protein M1S42_14685 PF00437 Type II/IV secretion system protein M1S42_14690 PF01475 Ferric uptake regulator family M1S42_14695 PF04355 SmpA / OmlA family M1S42_14700 PF03658 RnfH family Ubiquitin M1S42_14710 PF01814 Hemerythrin HHE cation binding domain M1S42_14715 PF13230 Glutamine amidotransferases class-II M1S42_14725 PF00696 Amino acid kinase family M1S42_14730 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II M1S42_14730 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I M1S42_14730 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain M1S42_14730 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III M1S42_14735 PF00692 dUTPase M1S42_14740 PF00580 UvrD/REP helicase N-terminal domain M1S42_14740 PF13361 UvrD-like helicase C-terminal domain M1S42_14745 PF00691 OmpA family M1S42_14745 PF13488 Glycine zipper M1S42_14750 PF01553 Acyltransferase M1S42_14760 PF03775 Septum formation inhibitor MinC, C-terminal domain M1S42_14765 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain M1S42_14770 PF03776 Septum formation topological specificity factor MinE M1S42_14790 PF01810 LysE type translocator M1S42_14800 PF07992 Pyridine nucleotide-disulphide oxidoreductase M1S42_14805 PF03588 Leucyl/phenylalanyl-tRNA protein transferase M1S42_14810 PF04377 Arginine-tRNA-protein transferase, C terminus M1S42_14810 PF04376 Arginine-tRNA-protein transferase, N terminus M1S42_14815 PF00583 Acetyltransferase (GNAT) family M1S42_14830 PF00009 Elongation factor Tu GTP binding domain M1S42_14830 PF03144 Elongation factor Tu domain 2 M1S42_14830 PF03143 Elongation factor Tu C-terminal domain M1S42_14835 PF00679 Elongation factor G C-terminus M1S42_14835 PF14492 Elongation Factor G, domain II M1S42_14835 PF03764 Elongation factor G, domain IV M1S42_14835 PF00009 Elongation factor Tu GTP binding domain M1S42_14835 PF03144 Elongation factor Tu domain 2 M1S42_14840 PF00177 Ribosomal protein S7p/S5e M1S42_14845 PF00164 Ribosomal protein S12/S23 M1S42_14855 PF02801 Beta-ketoacyl synthase, C-terminal domain M1S42_14855 PF00109 Beta-ketoacyl synthase, N-terminal domain M1S42_14860 PF03653 Uncharacterised protein family (UPF0093) M1S42_14865 PF02678 Pirin M1S42_14865 PF05726 Pirin C-terminal cupin domain M1S42_14875 PF00795 Carbon-nitrogen hydrolase M1S42_14875 PF02540 NAD synthase M1S42_14890 PF00175 Oxidoreductase NAD-binding domain M1S42_14890 PF00970 Oxidoreductase FAD-binding domain M1S42_14890 PF00111 2Fe-2S iron-sulfur cluster binding domain M1S42_14895 PF00171 Aldehyde dehydrogenase family M1S42_14900 PF00848 Ring hydroxylating alpha subunit (catalytic domain) M1S42_14900 PF00355 Rieske [2Fe-2S] domain M1S42_14905 PF07859 alpha/beta hydrolase fold M1S42_14910 PF02028 BCCT, betaine/carnitine/choline family transporter M1S42_14915 PF00180 Isocitrate/isopropylmalate dehydrogenase M1S42_14920 PF03466 LysR substrate binding domain M1S42_14920 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M1S42_14940 PF00037 4Fe-4S binding domain M1S42_14945 PF01467 Cytidylyltransferase-like M1S42_14950 PF01668 SmpB protein M1S42_14955 PF03358 NADPH-dependent FMN reductase M1S42_14960 PF02578 Multi-copper polyphenol oxidoreductase laccase M1S42_14965 PF01479 S4 domain M1S42_14965 PF00849 RNA pseudouridylate synthase M1S42_14970 PF13525 Outer membrane lipoprotein M1S42_14975 PF10410 DnaB-helicase binding domain of primase M1S42_14975 PF08278 DNA primase DnaG DnaB-binding M1S42_14975 PF08275 DNA primase catalytic core, N-terminal domain M1S42_14975 PF01807 CHC2 zinc finger M1S42_14980 PF01488 Shikimate / quinate 5-dehydrogenase M1S42_14980 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain M1S42_14980 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain M1S42_14990 PF03550 Outer membrane lipoprotein LolB M1S42_14995 PF08544 GHMP kinases C terminal M1S42_14995 PF00288 GHMP kinases N terminal domain M1S42_15020 PF14572 Phosphoribosyl synthetase-associated domain M1S42_15020 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase M1S42_15025 PF01386 Ribosomal L25p family M1S42_15030 PF01195 Peptidyl-tRNA hydrolase M1S42_15035 PF02261 Aspartate decarboxylase M1S42_15050 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase M1S42_15060 PF02581 Thiamine monophosphate synthase M1S42_15060 PF08543 Phosphomethylpyrimidine kinase M1S42_15060 PF03070 TENA/THI-4/PQQC family M1S42_15065 PF04972 BON domain M1S42_15065 PF01476 LysM domain M1S42_15070 PF00550 Phosphopantetheine attachment site M1S42_15080 PF00698 Acyl transferase domain M1S42_15085 PF01783 Ribosomal L32p protein family M1S42_15090 PF02620 Large ribosomal RNA subunit accumulation protein YceD M1S42_15095 PF04315 Elongation factor P hydroxylase M1S42_15100 PF01300 Telomere recombination M1S42_15105 PF02616 Segregation and condensation protein ScpA M1S42_15110 PF04079 Segregation and condensation complex subunit ScpB M1S42_15115 PF00849 RNA pseudouridylate synthase M1S42_15115 PF01479 S4 domain M1S42_15130 PF00155 Aminotransferase class I and II M1S42_15135 PF00202 Aminotransferase class-III M1S42_15135 PF06968 Biotin and Thiamin Synthesis associated domain M1S42_15135 PF04055 Radical SAM superfamily M1S42_15140 PF12697 Alpha/beta hydrolase family M1S42_15140 PF08241 Methyltransferase domain M1S42_15145 PF02358 Trehalose-phosphatase M1S42_15150 PF00982 Glycosyltransferase family 20 M1S42_15155 PF07690 Major Facilitator Superfamily M1S42_15160 PF00210 Ferritin-like domain M1S42_15165 PF03120 NAD-dependent DNA ligase OB-fold domain M1S42_15165 PF12826 Helix-hairpin-helix motif M1S42_15165 PF03119 NAD-dependent DNA ligase C4 zinc finger domain M1S42_15165 PF01653 NAD-dependent DNA ligase adenylation domain M1S42_15165 PF00533 BRCA1 C Terminus (BRCT) domain M1S42_15175 PF06470 SMC proteins Flexible Hinge Domain M1S42_15175 PF02463 RecF/RecN/SMC N terminal domain M1S42_15185 PF01925 Sulfite exporter TauE/SafE M1S42_15195 PF03309 Type III pantothenate kinase M1S42_15200 PF02881 SRP54-type protein, helical bundle domain M1S42_15200 PF00448 SRP54-type protein, GTPase domain M1S42_15200 PF02978 Signal peptide binding domain M1S42_15210 PF01207 Dihydrouridine synthase (Dus) M1S42_15250 PF00692 dUTPase M1S42_15265 PF01048 Phosphorylase superfamily M1S42_15270 PF10609 NUBPL iron-transfer P-loop NTPase M1S42_15280 PF09334 tRNA synthetases class I (M) M1S42_15280 PF01588 Putative tRNA binding domain M1S42_15305 PF13533 Biotin-lipoyl like M1S42_15310 PF00291 Pyridoxal-phosphate dependent enzyme M1S42_15325 PF05552 Conserved TM helix M1S42_15340 PF00970 Oxidoreductase FAD-binding domain M1S42_15340 PF00175 Oxidoreductase NAD-binding domain M1S42_15345 PF03466 LysR substrate binding domain M1S42_15345 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M1S42_15350 PF00313 'Cold-shock' DNA-binding domain M1S42_15360 PF00361 Proton-conducting membrane transporter M1S42_15365 PF00361 Proton-conducting membrane transporter M1S42_15370 PF00361 Proton-conducting membrane transporter M1S42_15370 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus M1S42_15375 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L M1S42_15380 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 M1S42_15385 PF12838 4Fe-4S dicluster domain M1S42_15390 PF00146 NADH dehydrogenase M1S42_15395 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region M1S42_15395 PF04879 Molybdopterin oxidoreductase Fe4S4 domain M1S42_15395 PF00384 Molybdopterin oxidoreductase M1S42_15400 PF10531 SLBB domain M1S42_15400 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region M1S42_15400 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit M1S42_15410 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit M1S42_15410 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit M1S42_15415 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit M1S42_15420 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 M1S42_15425 PF00990 Diguanylate cyclase, GGDEF domain M1S42_15425 PF17151 Periplasmic sensor domain M1S42_15435 PF00672 HAMP domain M1S42_15435 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M1S42_15435 PF00512 His Kinase A (phospho-acceptor) domain M1S42_15440 PF00486 Transcriptional regulatory protein, C terminal M1S42_15440 PF00072 Response regulator receiver domain M1S42_15450 PF02867 Ribonucleotide reductase, barrel domain M1S42_15450 PF00317 Ribonucleotide reductase, all-alpha domain M1S42_15450 PF03477 ATP cone domain M1S42_15460 PF00268 Ribonucleotide reductase, small chain M1S42_15470 PF13756 Stimulus-sensing domain M1S42_15470 PF00512 His Kinase A (phospho-acceptor) domain M1S42_15470 PF13755 Sensor N-terminal transmembrane domain M1S42_15470 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M1S42_15470 PF00672 HAMP domain M1S42_15540 PF01011 PQQ enzyme repeat M1S42_15540 PF13360 PQQ-like domain M1S42_15565 PF02567 Phenazine biosynthesis-like protein M1S42_15590 PF01613 Flavin reductase like domain M1S42_15595 PF01717 Cobalamin-independent synthase, Catalytic domain M1S42_15595 PF08267 Cobalamin-independent synthase, N-terminal domain M1S42_15605 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M1S42_15605 PF03466 LysR substrate binding domain M1S42_15610 PF01810 LysE type translocator M1S42_15620 PF12833 Helix-turn-helix domain M1S42_15620 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term M1S42_15625 PF07687 Peptidase dimerisation domain M1S42_15625 PF01546 Peptidase family M20/M25/M40 M1S42_15635 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M1S42_15635 PF03466 LysR substrate binding domain M1S42_15640 PF07690 Major Facilitator Superfamily M1S42_15650 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M1S42_15650 PF03466 LysR substrate binding domain M1S42_15655 PF14537 Cytochrome c3 M1S42_15655 PF00890 FAD binding domain M1S42_15665 PF02515 CoA-transferase family III M1S42_15670 PF07690 Major Facilitator Superfamily M1S42_15675 PF00441 Acyl-CoA dehydrogenase, C-terminal domain M1S42_15675 PF02771 Acyl-CoA dehydrogenase, N-terminal domain M1S42_15675 PF02770 Acyl-CoA dehydrogenase, middle domain M1S42_15680 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M1S42_15680 PF03466 LysR substrate binding domain M1S42_15685 PF00107 Zinc-binding dehydrogenase M1S42_15685 PF08240 Alcohol dehydrogenase GroES-like domain M1S42_15690 PF00962 Adenosine/AMP deaminase M1S42_15715 PF02445 Quinolinate synthetase A protein M1S42_15720 PF01960 ArgJ family M1S42_15725 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain M1S42_15725 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain M1S42_15730 PF00893 Small Multidrug Resistance protein M1S42_15740 PF05275 Copper resistance protein B precursor (CopB) M1S42_15745 PF00394 Multicopper oxidase M1S42_15745 PF07731 Multicopper oxidase M1S42_15745 PF07732 Multicopper oxidase M1S42_15760 PF00834 Ribulose-phosphate 3 epimerase family M1S42_15770 PF00756 Putative esterase M1S42_15780 PF04445 Putative SAM-dependent methyltransferase M1S42_15785 PF00814 Glycoprotease family M1S42_15790 PF00132 Bacterial transferase hexapeptide (six repeats) M1S42_15795 PF00293 NUDIX domain M1S42_15835 PF00425 chorismate binding enzyme M1S42_15835 PF04715 Anthranilate synthase component I, N terminal region M1S42_15840 PF00155 Aminotransferase class I and II M1S42_15845 PF00815 Histidinol dehydrogenase M1S42_15850 PF01634 ATP phosphoribosyltransferase M1S42_15855 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) M1S42_15860 PF01722 BolA-like protein M1S42_15865 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein M1S42_15870 PF04963 Sigma-54 factor, core binding domain M1S42_15870 PF00309 Sigma-54 factor, Activator interacting domain (AID) M1S42_15870 PF04552 Sigma-54, DNA binding domain M1S42_15915 PF00795 Carbon-nitrogen hydrolase M1S42_15925 PF01047 MarR family M1S42_15930 PF02566 OsmC-like protein M1S42_15935 PF00437 Type II/IV secretion system protein M1S42_15955 PF01367 5'-3' exonuclease, C-terminal SAM fold M1S42_15955 PF01612 3'-5' exonuclease M1S42_15955 PF00476 DNA polymerase family A M1S42_15955 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain M1S42_15960 PF02325 YGGT family M1S42_15965 PF14748 Pyrroline-5-carboxylate reductase dimerisation M1S42_15965 PF03807 NADP oxidoreductase coenzyme F420-dependent M1S42_15970 PF11734 TilS substrate C-terminal domain M1S42_15970 PF09179 TilS substrate binding domain M1S42_15970 PF01171 PP-loop family M1S42_15975 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit M1S42_15980 PF02541 Ppx/GppA phosphatase family M1S42_15985 PF00085 Thioredoxin M1S42_15990 PF07497 Rho termination factor, RNA-binding domain M1S42_15990 PF07498 Rho termination factor, N-terminal domain M1S42_15990 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain M1S42_16005 PF00216 Bacterial DNA-binding protein M1S42_16010 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain M1S42_16010 PF03147 Ferredoxin-fold anticodon binding domain M1S42_16010 PF03484 tRNA synthetase B5 domain M1S42_16010 PF03483 B3/4 domain M1S42_16010 PF01588 Putative tRNA binding domain M1S42_16015 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain M1S42_16015 PF01409 tRNA synthetases class II core domain (F) M1S42_16035 PF00453 Ribosomal protein L20 M1S42_16040 PF01632 Ribosomal protein L35 M1S42_16050 PF07690 Major Facilitator Superfamily M1S42_16055 PF09335 SNARE associated Golgi protein M1S42_16060 PF00043 Glutathione S-transferase, C-terminal domain M1S42_16060 PF02798 Glutathione S-transferase, N-terminal domain M1S42_16065 PF00707 Translation initiation factor IF-3, C-terminal domain M1S42_16065 PF05198 Translation initiation factor IF-3, N-terminal domain M1S42_16070 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain M1S42_16070 PF02824 TGS domain M1S42_16070 PF03129 Anticodon binding domain M1S42_16070 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) M1S42_16075 PF00501 AMP-binding enzyme M1S42_16075 PF13193 AMP-binding enzyme C-terminal domain M1S42_16080 PF04751 Protein of unknown function (DUF615) M1S42_16085 PF00381 PTS HPr component phosphorylation site M1S42_16090 PF03668 P-loop ATPase protein family M1S42_16095 PF02569 Pantoate-beta-alanine ligase M1S42_16105 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) M1S42_16110 PF01743 Poly A polymerase head domain M1S42_16110 PF12626 Polymerase A arginine-rich C-terminus M1S42_16110 PF12627 Probable RNA and SrmB- binding site of polymerase A M1S42_16120 PF03819 MazG nucleotide pyrophosphohydrolase domain M1S42_16130 PF13291 ACT domain M1S42_16130 PF02824 TGS domain M1S42_16130 PF04607 Region found in RelA / SpoT proteins M1S42_16135 PF05958 tRNA (Uracil-5-)-methyltransferase M1S42_16145 PF00291 Pyridoxal-phosphate dependent enzyme M1S42_16150 PF00672 HAMP domain M1S42_16150 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M1S42_16150 PF00512 His Kinase A (phospho-acceptor) domain M1S42_16150 PF00072 Response regulator receiver domain M1S42_16150 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) M1S42_16150 PF01627 Hpt domain M1S42_16155 PF00378 Enoyl-CoA hydratase/isomerase M1S42_16160 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase M1S42_16160 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase M1S42_16165 PF01261 Xylose isomerase-like TIM barrel M1S42_16175 PF00106 short chain dehydrogenase M1S42_16180 PF02233 NAD(P) transhydrogenase beta subunit M1S42_16185 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch M1S42_16190 PF01262 Alanine dehydrogenase/PNT, C-terminal domain M1S42_16190 PF05222 Alanine dehydrogenase/PNT, N-terminal domain M1S42_16195 PF00892 EamA-like transporter family M1S42_16205 PF07690 Major Facilitator Superfamily M1S42_16210 PF01207 Dihydrouridine synthase (Dus) M1S42_16220 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M1S42_16220 PF03466 LysR substrate binding domain M1S42_16230 PF00899 ThiF family M1S42_16240 PF00330 Aconitase family (aconitate hydratase) M1S42_16240 PF00694 Aconitase C-terminal domain M1S42_16245 PF01026 TatD related DNase M1S42_16260 PF16658 Class II release factor RF3, C-terminal domain M1S42_16260 PF00009 Elongation factor Tu GTP binding domain M1S42_16260 PF03144 Elongation factor Tu domain 2 M1S42_16280 PF00563 EAL domain M1S42_16280 PF00990 Diguanylate cyclase, GGDEF domain M1S42_16280 PF03707 Bacterial signalling protein N terminal repeat M1S42_16285 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain M1S42_16285 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain M1S42_16290 PF10369 Small subunit of acetolactate synthase M1S42_16295 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain M1S42_16295 PF00205 Thiamine pyrophosphate enzyme, central domain M1S42_16295 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain M1S42_16305 PF00133 tRNA synthetases class I (I, L, M and V) M1S42_16305 PF08264 Anticodon-binding domain of tRNA M1S42_16305 PF13603 Leucyl-tRNA synthetase, Domain 2 M1S42_16305 PF09334 tRNA synthetases class I (M) M1S42_16320 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion M1S42_16325 PF02687 FtsX-like permease family M1S42_16325 PF12704 MacB-like periplasmic core domain M1S42_16325 PF00005 ABC transporter M1S42_16330 PF02321 Outer membrane efflux protein M1S42_16345 PF00929 Exonuclease M1S42_16350 PF03193 RsgA GTPase M1S42_16360 PF00462 Glutaredoxin M1S42_16365 PF02556 Preprotein translocase subunit SecB M1S42_16380 PF00109 Beta-ketoacyl synthase, N-terminal domain M1S42_16380 PF02801 Beta-ketoacyl synthase, C-terminal domain M1S42_16395 PF02801 Beta-ketoacyl synthase, C-terminal domain M1S42_16395 PF00109 Beta-ketoacyl synthase, N-terminal domain M1S42_16405 PF04820 Tryptophan halogenase M1S42_16425 PF00221 Aromatic amino acid lyase M1S42_16440 PF00501 AMP-binding enzyme M1S42_16440 PF13193 AMP-binding enzyme C-terminal domain M1S42_16450 PF00550 Phosphopantetheine attachment site M1S42_16455 PF00550 Phosphopantetheine attachment site M1S42_16470 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal M1S42_16470 PF01926 50S ribosome-binding GTPase M1S42_16475 PF13360 PQQ-like domain M1S42_16485 PF13393 Histidyl-tRNA synthetase M1S42_16485 PF03129 Anticodon binding domain M1S42_16490 PF04551 GcpE protein M1S42_16495 PF13464 Domain of unknown function (DUF4115) M1S42_16505 PF04055 Radical SAM superfamily M1S42_16510 PF00334 Nucleoside diphosphate kinase M1S42_16515 PF04384 Iron-sulphur cluster assembly M1S42_16520 PF01569 PAP2 superfamily M1S42_16525 PF13439 Glycosyltransferase Family 4 M1S42_16525 PF00534 Glycosyl transferases group 1 M1S42_16530 PF11818 C-terminal domain of tail specific protease (DUF3340) M1S42_16530 PF00595 PDZ domain M1S42_16530 PF17804 Tail specific protease N-terminal domain M1S42_16530 PF03572 Peptidase family S41 M1S42_16535 PF00933 Glycosyl hydrolase family 3 N terminal domain M1S42_16545 PF00561 alpha/beta hydrolase fold M1S42_16550 PF00171 Aldehyde dehydrogenase family M1S42_16555 PF00171 Aldehyde dehydrogenase family M1S42_16560 PF01202 Shikimate kinase M1S42_16565 PF02447 GntP family permease M1S42_16570 PF01081 KDPG and KHG aldolase M1S42_16575 PF00920 Dehydratase family M1S42_16580 PF00871 Acetokinase family M1S42_16585 PF07085 DRTGG domain M1S42_16585 PF01515 Phosphate acetyl/butaryl transferase M1S42_16590 PF05681 Fumarate hydratase (Fumerase) M1S42_16590 PF05683 Fumarase C-terminus M1S42_16605 PF06689 ClpX C4-type zinc finger M1S42_16605 PF10431 C-terminal, D2-small domain, of ClpB protein M1S42_16605 PF07724 AAA domain (Cdc48 subfamily) M1S42_16610 PF00574 Clp protease M1S42_16615 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase M1S42_16615 PF05698 Bacterial trigger factor protein (TF) C-terminus M1S42_16615 PF05697 Bacterial trigger factor protein (TF) M1S42_16620 PF07715 TonB-dependent Receptor Plug Domain M1S42_16620 PF00593 TonB dependent receptor M1S42_16625 PF13640 2OG-Fe(II) oxygenase superfamily M1S42_16625 PF18331 PKHD-type hydroxylase C-terminal domain M1S42_16630 PF08502 LeuA allosteric (dimerisation) domain M1S42_16630 PF00682 HMGL-like M1S42_16635 PF00561 alpha/beta hydrolase fold M1S42_16640 PF07021 Methionine biosynthesis protein MetW M1S42_16640 PF00561 alpha/beta hydrolase fold M1S42_16650 PF01725 Ham1 family M1S42_16660 PF02416 mttA/Hcf106 family M1S42_16665 PF02416 mttA/Hcf106 family M1S42_16670 PF00902 Sec-independent protein translocase protein (TatC) M1S42_16690 PF01790 Prolipoprotein diacylglyceryl transferase M1S42_16705 PF00303 Thymidylate synthase M1S42_16710 PF00186 Dihydrofolate reductase M1S42_16720 PF01625 Peptide methionine sulfoxide reductase M1S42_16730 PF01618 MotA/TolQ/ExbB proton channel family M1S42_16740 PF01842 ACT domain M1S42_16740 PF00551 Formyl transferase M1S42_16750 PF00171 Aldehyde dehydrogenase family M1S42_16755 PF00830 Ribosomal L28 family M1S42_16760 PF00471 Ribosomal protein L33 M1S42_16765 PF00999 Sodium/hydrogen exchanger family M1S42_16765 PF02254 TrkA-N domain M1S42_16785 PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) M1S42_16790 PF00580 UvrD/REP helicase N-terminal domain M1S42_16790 PF13361 UvrD-like helicase C-terminal domain M1S42_16805 PF08272 Topoisomerase I zinc-ribbon-like M1S42_16805 PF01131 DNA topoisomerase M1S42_16805 PF01751 Toprim domain M1S42_16805 PF01396 Topoisomerase DNA binding C4 zinc finger M1S42_16815 PF01638 HxlR-like helix-turn-helix M1S42_16820 PF08240 Alcohol dehydrogenase GroES-like domain M1S42_16820 PF00107 Zinc-binding dehydrogenase M1S42_16825 PF04102 SlyX M1S42_16830 PF12848 ABC transporter M1S42_16830 PF16326 ABC transporter C-terminal domain M1S42_16830 PF00005 ABC transporter M1S42_16835 PF01810 LysE type translocator M1S42_16840 PF03279 Bacterial lipid A biosynthesis acyltransferase M1S42_16850 PF00375 Sodium:dicarboxylate symporter family M1S42_16860 PF01118 Semialdehyde dehydrogenase, NAD binding domain M1S42_16860 PF02774 Semialdehyde dehydrogenase, dimerisation domain M1S42_16880 PF01416 tRNA pseudouridine synthase M1S42_16890 PF01176 Translation initiation factor 1A / IF-1 M1S42_16905 PF00180 Isocitrate/isopropylmalate dehydrogenase M1S42_16915 PF00694 Aconitase C-terminal domain M1S42_16920 PF00330 Aconitase family (aconitate hydratase) M1S42_16930 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M1S42_16930 PF03466 LysR substrate binding domain M1S42_16950 PF00293 NUDIX domain M1S42_16955 PF00391 PEP-utilising enzyme, mobile domain M1S42_16955 PF01590 GAF domain M1S42_16955 PF05524 PEP-utilising enzyme, N-terminal M1S42_16955 PF02896 PEP-utilising enzyme, TIM barrel domain M1S42_16960 PF00141 Peroxidase M1S42_16965 PF12706 Beta-lactamase superfamily domain M1S42_16970 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M1S42_16970 PF03466 LysR substrate binding domain M1S42_16980 PF02798 Glutathione S-transferase, N-terminal domain M1S42_16985 PF13280 WYL domain M1S42_16985 PF08279 HTH domain M1S42_16990 PF13419 Haloacid dehalogenase-like hydrolase M1S42_16995 PF00849 RNA pseudouridylate synthase M1S42_16995 PF01479 S4 domain M1S42_17000 PF12111 Polyribonucleotide phosphorylase C terminal M1S42_17000 PF10150 Ribonuclease E/G family M1S42_17000 PF00575 S1 RNA binding domain M1S42_17005 PF13193 AMP-binding enzyme C-terminal domain M1S42_17005 PF00501 AMP-binding enzyme M1S42_17020 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M1S42_17020 PF03466 LysR substrate binding domain M1S42_17025 PF00106 short chain dehydrogenase M1S42_17030 PF04055 Radical SAM superfamily M1S42_17030 PF06969 HemN C-terminal domain M1S42_17040 PF01554 MatE M1S42_17045 PF08028 Acyl-CoA dehydrogenase, C-terminal domain M1S42_17045 PF02770 Acyl-CoA dehydrogenase, middle domain M1S42_17045 PF02771 Acyl-CoA dehydrogenase, N-terminal domain M1S42_17050 PF08028 Acyl-CoA dehydrogenase, C-terminal domain M1S42_17050 PF02771 Acyl-CoA dehydrogenase, N-terminal domain M1S42_17055 PF03109 ABC1 family M1S42_17060 PF01197 Ribosomal protein L31 M1S42_17075 PF02537 CrcB-like protein, Camphor Resistance (CrcB) M1S42_17095 PF03884 DNA gyrase inhibitor YacG M1S42_17100 PF00753 Metallo-beta-lactamase superfamily M1S42_17105 PF00762 Ferrochelatase M1S42_17115 PF01177 Asp/Glu/Hydantoin racemase M1S42_17130 PF01206 Sulfurtransferase TusA M1S42_17135 PF00571 CBS domain M1S42_17135 PF03471 Transporter associated domain M1S42_17140 PF00795 Carbon-nitrogen hydrolase M1S42_17145 PF01588 Putative tRNA binding domain M1S42_17155 PF08334 Type II secretion system (T2SS), protein G M1S42_17155 PF07963 Prokaryotic N-terminal methylation motif M1S42_17160 PF00482 Type II secretion system (T2SS), protein F M1S42_17165 PF00271 Helicase conserved C-terminal domain M1S42_17165 PF17764 3′ DNA-binding domain (3′BD) M1S42_17165 PF18074 Primosomal protein N C-terminal domain M1S42_17165 PF18319 PriA DNA helicase Cys-rich region (CRR) domain M1S42_17165 PF00270 DEAD/DEAH box helicase M1S42_17170 PF00999 Sodium/hydrogen exchanger family M1S42_17170 PF02254 TrkA-N domain M1S42_17175 PF01430 Hsp33 protein M1S42_17185 PF00226 DnaJ domain M1S42_17185 PF01556 DnaJ C terminal domain M1S42_17195 PF01544 CorA-like Mg2+ transporter protein M1S42_17200 PF00013 KH domain M1S42_17200 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain M1S42_17200 PF01138 3' exoribonuclease family, domain 1 M1S42_17200 PF03725 3' exoribonuclease family, domain 2 M1S42_17200 PF00575 S1 RNA binding domain M1S42_17205 PF00312 Ribosomal protein S15 M1S42_17210 PF00144 Beta-lactamase M1S42_17215 PF13538 UvrD-like helicase C-terminal domain M1S42_17220 PF12705 PD-(D/E)XK nuclease superfamily M1S42_17220 PF00580 UvrD/REP helicase N-terminal domain M1S42_17220 PF13361 UvrD-like helicase C-terminal domain M1S42_17225 PF17946 RecC C-terminal domain M1S42_17235 PF03976 Polyphosphate kinase 2 (PPK2) M1S42_17245 PF01209 ubiE/COQ5 methyltransferase family M1S42_17255 PF03109 ABC1 family M1S42_17260 PF01494 FAD binding domain M1S42_17265 PF01502 Phosphoribosyl-AMP cyclohydrolase M1S42_17280 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus M1S42_17280 PF00361 Proton-conducting membrane transporter M1S42_17280 PF04039 Domain related to MnhB subunit of Na+/H+ antiporter M1S42_17280 PF13244 Domain of unknown function (DUF4040) M1S42_17285 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L M1S42_17290 PF00361 Proton-conducting membrane transporter M1S42_17295 PF01899 Na+/H+ ion antiporter subunit M1S42_17300 PF04066 Multiple resistance and pH regulation protein F (MrpF / PhaF) M1S42_17305 PF03334 Na+/H+ antiporter subunit M1S42_17310 PF02033 Ribosome-binding factor A M1S42_17315 PF00009 Elongation factor Tu GTP binding domain M1S42_17315 PF11987 Translation-initiation factor 2 M1S42_17315 PF04760 Translation initiation factor IF-2, N-terminal region M1S42_17315 PF08364 Bacterial translation initiation factor IF-2 associated region M1S42_17320 PF13184 NusA-like KH domain M1S42_17320 PF08529 NusA N-terminal domain M1S42_17320 PF00575 S1 RNA binding domain M1S42_17325 PF02576 RimP N-terminal domain M1S42_17325 PF17384 RimP C-terminal SH3 domain M1S42_17345 PF03840 Preprotein translocase SecG subunit M1S42_17350 PF00121 Triosephosphate isomerase M1S42_17355 PF00437 Type II/IV secretion system protein M1S42_17355 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain M1S42_17360 PF00482 Type II secretion system (T2SS), protein F M1S42_17370 PF06750 Bacterial Peptidase A24 N-terminal domain M1S42_17370 PF01478 Type IV leader peptidase family M1S42_17375 PF01121 Dephospho-CoA kinase M1S42_17385 PF00588 SpoU rRNA Methylase family M1S42_17385 PF08032 RNA 2'-O ribose methyltransferase substrate binding M1S42_17390 PF06865 Pyrimidine/purine nucleoside phosphorylase M1S42_17400 PF02463 RecF/RecN/SMC N terminal domain M1S42_17405 PF02622 Uncharacterized ACR, COG1678 M1S42_17410 PF03652 Holliday junction resolvase M1S42_17415 PF13533 Biotin-lipoyl like M1S42_17440 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain M1S42_17440 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain M1S42_17440 PF12833 Helix-turn-helix domain M1S42_17440 PF02805 Metal binding domain of Ada M1S42_17445 PF01066 CDP-alcohol phosphatidyltransferase M1S42_17455 PF01541 GIY-YIG catalytic domain M1S42_17455 PF02151 UvrB/uvrC motif M1S42_17455 PF08459 UvrC Helix-hairpin-helix N-terminal M1S42_17475 PF00378 Enoyl-CoA hydratase/isomerase M1S42_17475 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain M1S42_17475 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain M1S42_17480 PF02803 Thiolase, C-terminal domain M1S42_17480 PF00108 Thiolase, N-terminal domain M1S42_17500 PF09278 MerR, DNA binding M1S42_17500 PF00376 MerR family regulatory protein M1S42_17510 PF01323 DSBA-like thioredoxin domain M1S42_17525 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M1S42_17525 PF00183 Hsp90 protein M1S42_17540 PF13726 Na+-H+ antiporter family M1S42_17540 PF03553 Na+/H+ antiporter family M1S42_17545 PF00561 alpha/beta hydrolase fold M1S42_17565 PF05000 RNA polymerase Rpb1, domain 4 M1S42_17565 PF04997 RNA polymerase Rpb1, domain 1 M1S42_17565 PF04983 RNA polymerase Rpb1, domain 3 M1S42_17565 PF00623 RNA polymerase Rpb1, domain 2 M1S42_17565 PF04998 RNA polymerase Rpb1, domain 5 M1S42_17570 PF04565 RNA polymerase Rpb2, domain 3 M1S42_17570 PF10385 RNA polymerase beta subunit external 1 domain M1S42_17570 PF00562 RNA polymerase Rpb2, domain 6 M1S42_17570 PF04560 RNA polymerase Rpb2, domain 7 M1S42_17570 PF04563 RNA polymerase beta subunit M1S42_17570 PF04561 RNA polymerase Rpb2, domain 2 M1S42_17575 PF00542 Ribosomal protein L7/L12 C-terminal domain M1S42_17575 PF16320 Ribosomal protein L7/L12 dimerisation domain M1S42_17580 PF00466 Ribosomal protein L10 M1S42_17585 PF00687 Ribosomal protein L1p/L10e family M1S42_17590 PF00298 Ribosomal protein L11, RNA binding domain M1S42_17590 PF03946 Ribosomal protein L11, N-terminal domain M1S42_17595 PF00467 KOW motif M1S42_17595 PF02357 Transcription termination factor nusG M1S42_17600 PF00584 SecE/Sec61-gamma subunits of protein translocation complex M1S42_17635 PF00425 chorismate binding enzyme M1S42_17635 PF04715 Anthranilate synthase component I, N terminal region M1S42_17640 PF13419 Haloacid dehalogenase-like hydrolase M1S42_17645 PF00498 FHA domain M1S42_17645 PF12401 Protein of unknown function (DUF2662) M1S42_17650 PF00263 Bacterial type II and III secretion system protein M1S42_17650 PF03958 Bacterial type II/III secretion system short domain M1S42_17665 PF00816 H-NS histone family M1S42_17690 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain M1S42_17690 PF03900 Porphobilinogen deaminase, C-terminal domain M1S42_17695 PF04397 LytTr DNA-binding domain M1S42_17695 PF00072 Response regulator receiver domain M1S42_17700 PF07694 5TMR of 5TMR-LYT M1S42_17700 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M1S42_17700 PF06580 Histidine kinase M1S42_17705 PF14698 Argininosuccinate lyase C-terminal M1S42_17705 PF00206 Lyase M1S42_17710 PF04362 Bacterial Fe(2+) trafficking M1S42_17715 PF01895 PhoU domain M1S42_17720 PF02321 Outer membrane efflux protein M1S42_17725 PF00892 EamA-like transporter family M1S42_17740 PF01964 Radical SAM ThiC family M1S42_17740 PF13667 ThiC-associated domain M1S42_17745 PF00293 NUDIX domain M1S42_17750 PF00149 Calcineurin-like phosphoesterase M1S42_17755 PF01258 Prokaryotic dksA/traR C4-type zinc finger M1S42_17760 PF00749 tRNA synthetases class I (E and Q), catalytic domain M1S42_17765 PF01098 Cell cycle protein M1S42_17770 PF02875 Mur ligase family, glutamate ligase domain M1S42_17770 PF08245 Mur ligase middle domain M1S42_17780 PF07664 Ferrous iron transport protein B C terminus M1S42_17780 PF07670 Nucleoside recognition M1S42_17780 PF02421 Ferrous iron transport protein B M1S42_17790 PF00589 Phage integrase family M1S42_17790 PF02899 Phage integrase, N-terminal SAM-like domain M1S42_17795 PF13098 Thioredoxin-like domain M1S42_17795 PF10411 Disulfide bond isomerase protein N-terminus M1S42_17800 PF00742 Homoserine dehydrogenase M1S42_17800 PF03447 Homoserine dehydrogenase, NAD binding domain M1S42_17800 PF01842 ACT domain M1S42_17805 PF00291 Pyridoxal-phosphate dependent enzyme M1S42_17810 PF00768 D-alanyl-D-alanine carboxypeptidase M1S42_17815 PF00196 Bacterial regulatory proteins, luxR family M1S42_17815 PF00072 Response regulator receiver domain M1S42_17820 PF00512 His Kinase A (phospho-acceptor) domain M1S42_17820 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M1S42_17825 PF00158 Sigma-54 interaction domain M1S42_17825 PF00072 Response regulator receiver domain M1S42_17825 PF02954 Bacterial regulatory protein, Fis family M1S42_17830 PF03572 Peptidase family S41 M1S42_17830 PF00595 PDZ domain M1S42_17835 PF06415 BPG-independent PGAM N-terminus (iPGM_N) M1S42_17835 PF01676 Metalloenzyme superfamily M1S42_17840 PF03739 Lipopolysaccharide export system permease LptF/LptG M1S42_17850 PF02789 Cytosol aminopeptidase family, N-terminal domain M1S42_17850 PF00883 Cytosol aminopeptidase family, catalytic domain M1S42_17870 PF00677 Lumazine binding domain M1S42_17880 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region M1S42_17880 PF01872 RibD C-terminal domain M1S42_17885 PF03477 ATP cone domain M1S42_17890 PF00909 Ammonium Transporter Family M1S42_17895 PF00543 Nitrogen regulatory protein P-II M1S42_17915 PF01636 Phosphotransferase enzyme family M1S42_17920 PF04655 Aminoglycoside/hydroxyurea antibiotic resistance kinase M1S42_17940 PF02909 Tetracyclin repressor-like, C-terminal domain M1S42_17940 PF00440 Bacterial regulatory proteins, tetR family M1S42_17945 PF07690 Major Facilitator Superfamily M1S42_17955 PF00916 Sulfate permease family M1S42_17955 PF01740 STAS domain M1S42_17960 PF00582 Universal stress protein family M1S42_17980 PF00665 Integrase core domain M1S42_17995 PF00155 Aminotransferase class I and II M1S42_17995 PF00392 Bacterial regulatory proteins, gntR family M1S42_18005 PF00701 Dihydrodipicolinate synthetase family M1S42_18020 PF03573 outer membrane porin, OprD family M1S42_18025 PF00719 Inorganic pyrophosphatase M1S42_18040 PF00501 AMP-binding enzyme M1S42_18040 PF13193 AMP-binding enzyme C-terminal domain M1S42_18045 PF03989 DNA gyrase C-terminal domain, beta-propeller M1S42_18045 PF00521 DNA gyrase/topoisomerase IV, subunit A M1S42_18050 PF07690 Major Facilitator Superfamily M1S42_18055 PF03458 UPF0126 domain M1S42_18060 PF02810 SEC-C motif M1S42_18065 PF03741 Integral membrane protein TerC family M1S42_18065 PF03471 Transporter associated domain M1S42_18070 PF03641 Possible lysine decarboxylase M1S42_18075 PF07690 Major Facilitator Superfamily M1S42_18085 PF00817 impB/mucB/samB family M1S42_18085 PF11799 impB/mucB/samB family C-terminal domain M1S42_18085 PF11798 IMS family HHH motif M1S42_18105 PF11842 Domain of unknown function (DUF3362) M1S42_18105 PF04055 Radical SAM superfamily M1S42_18105 PF08497 Radical SAM N-terminal M1S42_18125 PF03358 NADPH-dependent FMN reductase M1S42_18135 PF00291 Pyridoxal-phosphate dependent enzyme M1S42_18195 PF01327 Polypeptide deformylase M1S42_18205 PF02481 DNA recombination-mediator protein A M1S42_18205 PF17782 DprA winged helix domain M1S42_18210 PF01300 Telomere recombination M1S42_18215 PF00892 EamA-like transporter family M1S42_18220 PF00440 Bacterial regulatory proteins, tetR family M1S42_18225 PF07690 Major Facilitator Superfamily M1S42_18235 PF00255 Glutathione peroxidase M1S42_18245 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain M1S42_18250 PF02874 ATP synthase alpha/beta family, beta-barrel domain M1S42_18250 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain M1S42_18255 PF00231 ATP synthase M1S42_18260 PF00306 ATP synthase alpha/beta chain, C terminal domain M1S42_18260 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain M1S42_18260 PF02874 ATP synthase alpha/beta family, beta-barrel domain M1S42_18265 PF00213 ATP synthase delta (OSCP) subunit M1S42_18270 PF00430 ATP synthase B/B' CF(0) M1S42_18275 PF00137 ATP synthase subunit C M1S42_18280 PF00119 ATP synthase A chain M1S42_18300 PF00005 ABC transporter M1S42_18305 PF00950 ABC 3 transport family M1S42_18310 PF01810 LysE type translocator M1S42_18315 PF04261 Dyp-type peroxidase family M1S42_18325 PF00390 Malic enzyme, N-terminal domain M1S42_18325 PF03949 Malic enzyme, NAD binding domain M1S42_18330 PF03485 Arginyl tRNA synthetase N terminal domain M1S42_18330 PF05746 DALR anticodon binding domain M1S42_18330 PF00750 tRNA synthetases class I (R) M1S42_18350 PF05726 Pirin C-terminal cupin domain M1S42_18350 PF02678 Pirin M1S42_18360 PF03551 Transcriptional regulator PadR-like family M1S42_18365 PF13427 Domain of unknown function (DUF4111) M1S42_18365 PF01909 Nucleotidyltransferase domain M1S42_18370 PF00117 Glutamine amidotransferase class-I M1S42_18370 PF00958 GMP synthase C terminal domain M1S42_18370 PF02540 NAD synthase M1S42_18375 PF04286 Protein of unknown function (DUF445) M1S42_18380 PF07681 DoxX M1S42_18385 PF09335 SNARE associated Golgi protein M1S42_18400 PF13614 AAA domain M1S42_18410 PF01722 BolA-like protein M1S42_18425 PF01648 4'-phosphopantetheinyl transferase superfamily M1S42_18430 PF12697 Alpha/beta hydrolase family M1S42_18450 PF16197 Ketoacyl-synthetase C-terminal extension M1S42_18450 PF00109 Beta-ketoacyl synthase, N-terminal domain M1S42_18450 PF00550 Phosphopantetheine attachment site M1S42_18450 PF00975 Thioesterase domain M1S42_18450 PF14765 Polyketide synthase dehydratase M1S42_18450 PF02801 Beta-ketoacyl synthase, C-terminal domain M1S42_18450 PF08242 Methyltransferase domain M1S42_18455 PF02771 Acyl-CoA dehydrogenase, N-terminal domain M1S42_18455 PF02770 Acyl-CoA dehydrogenase, middle domain M1S42_18455 PF00441 Acyl-CoA dehydrogenase, C-terminal domain M1S42_18460 PF00501 AMP-binding enzyme M1S42_18465 PF00196 Bacterial regulatory proteins, luxR family M1S42_18465 PF03472 Autoinducer binding domain M1S42_18475 PF00765 Autoinducer synthase M1S42_18480 PF07690 Major Facilitator Superfamily M1S42_18480 PF00083 Sugar (and other) transporter M1S42_18485 PF00378 Enoyl-CoA hydratase/isomerase M1S42_18490 PF00378 Enoyl-CoA hydratase/isomerase M1S42_18495 PF02770 Acyl-CoA dehydrogenase, middle domain M1S42_18495 PF00441 Acyl-CoA dehydrogenase, C-terminal domain M1S42_18495 PF02771 Acyl-CoA dehydrogenase, N-terminal domain M1S42_18500 PF13193 AMP-binding enzyme C-terminal domain M1S42_18500 PF00501 AMP-binding enzyme M1S42_18505 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase M1S42_18505 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase M1S42_18510 PF00171 Aldehyde dehydrogenase family M1S42_18520 PF00324 Amino acid permease M1S42_18525 PF00324 Amino acid permease M1S42_18530 PF01042 Endoribonuclease L-PSP M1S42_18535 PF00842 Alanine racemase, C-terminal domain M1S42_18535 PF01168 Alanine racemase, N-terminal domain M1S42_18540 PF01266 FAD dependent oxidoreductase M1S42_18545 PF01037 Lrp/AsnC ligand binding domain M1S42_18555 PF00593 TonB dependent receptor M1S42_18555 PF07715 TonB-dependent Receptor Plug Domain M1S42_18570 PF00849 RNA pseudouridylate synthase M1S42_18585 PF08361 MAATS-type transcriptional repressor, C-terminal region M1S42_18585 PF00440 Bacterial regulatory proteins, tetR family M1S42_18595 PF00109 Beta-ketoacyl synthase, N-terminal domain M1S42_18595 PF02801 Beta-ketoacyl synthase, C-terminal domain M1S42_18630 PF00694 Aconitase C-terminal domain M1S42_18630 PF00330 Aconitase family (aconitate hydratase) M1S42_18635 PF00285 Citrate synthase, C-terminal domain M1S42_18645 PF00392 Bacterial regulatory proteins, gntR family M1S42_18645 PF07729 FCD domain M1S42_18655 PF00155 Aminotransferase class I and II M1S42_18660 PF01565 FAD binding domain M1S42_18660 PF09330 D-lactate dehydrogenase, membrane binding M1S42_18665 PF01070 FMN-dependent dehydrogenase M1S42_18670 PF07729 FCD domain M1S42_18670 PF00392 Bacterial regulatory proteins, gntR family M1S42_18675 PF02652 L-lactate permease M1S42_18680 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I M1S42_18680 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II M1S42_18680 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III M1S42_18680 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain M1S42_18685 PF16363 GDP-mannose 4,6 dehydratase M1S42_18690 PF00342 Phosphoglucose isomerase M1S42_18695 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain M1S42_18695 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain M1S42_18695 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain M1S42_18700 PF00483 Nucleotidyl transferase M1S42_18705 PF02397 Bacterial sugar transferase M1S42_18710 PF00535 Glycosyl transferase family 2 M1S42_18740 PF03102 NeuB family M1S42_18740 PF08666 SAF domain M1S42_18755 PF02348 Cytidylyltransferase M1S42_18760 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family M1S42_18765 PF02719 Polysaccharide biosynthesis protein M1S42_18770 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain M1S42_18770 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain M1S42_18770 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain M1S42_18775 PF10531 SLBB domain M1S42_18775 PF02563 Polysaccharide biosynthesis/export protein M1S42_18775 PF18412 Outer-membrane lipoprotein Wza C-terminal domain M1S42_18780 PF01451 Low molecular weight phosphotyrosine protein phosphatase M1S42_18785 PF02706 Chain length determinant protein M1S42_18785 PF13807 G-rich domain on putative tyrosine kinase M1S42_18785 PF13614 AAA domain M1S42_18790 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase M1S42_18790 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase M1S42_18795 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase M1S42_18795 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase M1S42_18800 PF03023 Lipid II flippase MurJ M1S42_18805 PF01510 N-acetylmuramoyl-L-alanine amidase M1S42_18810 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain M1S42_18810 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain M1S42_18820 PF05506 Domain of unknown function (DUF756) M1S42_18820 PF04185 Phosphoesterase family M1S42_18830 PF03725 3' exoribonuclease family, domain 2 M1S42_18830 PF01138 3' exoribonuclease family, domain 1 M1S42_18835 PF00487 Fatty acid desaturase M1S42_18840 PF00175 Oxidoreductase NAD-binding domain M1S42_18845 PF00440 Bacterial regulatory proteins, tetR family M1S42_18850 PF00440 Bacterial regulatory proteins, tetR family M1S42_18850 PF08360 QacR-like protein, C-terminal region M1S42_18855 PF01323 DSBA-like thioredoxin domain M1S42_18865 PF13419 Haloacid dehalogenase-like hydrolase M1S42_18870 PF00106 short chain dehydrogenase M1S42_18885 PF00696 Amino acid kinase family M1S42_18885 PF00583 Acetyltransferase (GNAT) family M1S42_18890 PF09084 NMT1/THI5 like M1S42_18895 PF09084 NMT1/THI5 like M1S42_18900 PF00296 Luciferase-like monooxygenase M1S42_18905 PF00528 Binding-protein-dependent transport system inner membrane component M1S42_18910 PF00005 ABC transporter M1S42_18915 PF00440 Bacterial regulatory proteins, tetR family M1S42_18915 PF08362 YcdC-like protein, C-terminal region M1S42_18920 PF01048 Phosphorylase superfamily M1S42_18930 PF01687 Riboflavin kinase M1S42_18930 PF06574 FAD synthetase M1S42_18935 PF06827 Zinc finger found in FPG and IleRS M1S42_18935 PF08264 Anticodon-binding domain of tRNA M1S42_18935 PF00133 tRNA synthetases class I (I, L, M and V) M1S42_18940 PF01252 Signal peptidase (SPase) II M1S42_18945 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase M1S42_18985 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD M1S42_18990 PF07859 alpha/beta hydrolase fold M1S42_19010 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M1S42_19010 PF03466 LysR substrate binding domain M1S42_19015 PF01025 GrpE M1S42_19020 PF00012 Hsp70 protein M1S42_19040 PF13406 Transglycosylase SLT domain M1S42_19045 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain M1S42_19045 PF02222 ATP-grasp domain M1S42_19050 PF00731 AIR carboxylase M1S42_19060 PF08245 Mur ligase middle domain M1S42_19060 PF02875 Mur ligase family, glutamate ligase domain M1S42_19060 PF01225 Mur ligase family, catalytic domain M1S42_19070 PF01569 PAP2 superfamily M1S42_19075 PF03741 Integral membrane protein TerC family M1S42_19085 PF03738 Glutathionylspermidine synthase preATP-grasp M1S42_19090 PF00355 Rieske [2Fe-2S] domain M1S42_19095 PF01979 Amidohydrolase family M1S42_19100 PF00156 Phosphoribosyl transferase domain M1S42_19110 PF13098 Thioredoxin-like domain M1S42_19110 PF10411 Disulfide bond isomerase protein N-terminus M1S42_19115 PF16916 Dimerisation domain of Zinc Transporter M1S42_19115 PF01545 Cation efflux family M1S42_19120 PF02583 Metal-sensitive transcriptional repressor M1S42_19125 PF01926 50S ribosome-binding GTPase M1S42_19125 PF12631 MnmE helical domain M1S42_19125 PF10396 GTP-binding protein TrmE N-terminus M1S42_19130 PF02096 60Kd inner membrane protein M1S42_19130 PF14849 YidC periplasmic domain M1S42_19135 PF01809 Putative membrane protein insertion efficiency factor M1S42_19140 PF00825 Ribonuclease P M1S42_19145 PF00468 Ribosomal protein L34 M1S42_19170 PF01807 CHC2 zinc finger M1S42_19170 PF08275 DNA primase catalytic core, N-terminal domain M1S42_19170 PF10410 DnaB-helicase binding domain of primase M1S42_19200 PF00625 Guanylate kinase M1S42_19215 PF07015 VirC1 protein M1S42_19225 PF00589 Phage integrase family M1S42_19225 PF02899 Phage integrase, N-terminal SAM-like domain M1S42_19260 PF07733 Bacterial DNA polymerase III alpha NTPase domain M1S42_19260 PF14579 Helix-hairpin-helix motif M1S42_19260 PF02811 PHP domain M1S42_19260 PF17657 Bacterial DNA polymerase III alpha subunit finger domain M1S42_19270 PF02811 PHP domain M1S42_19270 PF14579 Helix-hairpin-helix motif M1S42_19270 PF07733 Bacterial DNA polymerase III alpha NTPase domain M1S42_19270 PF17657 Bacterial DNA polymerase III alpha subunit finger domain M1S42_19285 PF01612 3'-5' exonuclease M1S42_19285 PF00476 DNA polymerase family A M1S42_19285 PF01367 5'-3' exonuclease, C-terminal SAM fold M1S42_19285 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain M1S42_19290 PF03161 LAGLIDADG DNA endonuclease family M1S42_19290 PF00154 recA bacterial DNA recombination protein M1S42_19315 PF02463 RecF/RecN/SMC N terminal domain M1S42_19315 PF06470 SMC proteins Flexible Hinge Domain M1S42_19335 PF00317 Ribonucleotide reductase, all-alpha domain M1S42_19335 PF02867 Ribonucleotide reductase, barrel domain M1S42_19335 PF03477 ATP cone domain M1S42_19340 PF00268 Ribonucleotide reductase, small chain M1S42_19380 PF00929 Exonuclease M1S42_19415 PF13737 Transposase DDE domain M1S42_19425 PF16925 Tetracyclin repressor-like, C-terminal domain M1S42_19425 PF00440 Bacterial regulatory proteins, tetR family M1S42_19435 PF00724 NADH:flavin oxidoreductase / NADH oxidase family M1S42_19445 PF00465 Iron-containing alcohol dehydrogenase M1S42_19460 PF00756 Putative esterase M1S42_19465 PF08240 Alcohol dehydrogenase GroES-like domain M1S42_19465 PF00107 Zinc-binding dehydrogenase M1S42_19470 PF02583 Metal-sensitive transcriptional repressor M1S42_19485 PF13823 Alcohol dehydrogenase GroES-associated M1S42_19485 PF00107 Zinc-binding dehydrogenase M1S42_19485 PF08240 Alcohol dehydrogenase GroES-like domain M1S42_19550 PF02216 B domain M1S42_19550 PF00746 LPXTG cell wall anchor motif M1S42_19550 PF01476 LysM domain M1S42_19550 PF03373 Octapeptide repeat M1S42_19550 PF04650 YSIRK type signal peptide M1S42_19565 PF02559 CarD-like/TRCF domain M1S42_19565 PF00270 DEAD/DEAH box helicase M1S42_19565 PF00271 Helicase conserved C-terminal domain M1S42_19565 PF03461 TRCF domain M1S42_19565 PF17757 UvrB interaction domain M1S42_19585 PF00005 ABC transporter M1S42_19585 PF09383 NIL domain M1S42_19745 PF13614 AAA domain M1S42_19750 PF02195 ParB-like nuclease domain M1S42_19750 PF17762 HTH domain found in ParB protein M1S42_19765 PF05816 Toxic anion resistance protein (TelA) M1S42_19860 PF00226 DnaJ domain M1S42_19860 PF01556 DnaJ C terminal domain M1S42_19860 PF00684 DnaJ central domain M1S42_19895 PF18272 single-stranded DNA binding TraI N-terminal subdomain M1S42_19895 PF07057 DNA helicase TraI M1S42_19895 PF18340 DNA relaxase TraI 2B/2B-like domain M1S42_19895 PF08751 TrwC relaxase M1S42_19930 PF02796 Helix-turn-helix domain of resolvase M1S42_19930 PF00239 Resolvase, N terminal domain M1S42_19945 PF01464 Transglycosylase SLT domain M1S42_19980 PF10411 Disulfide bond isomerase protein N-terminus M1S42_19980 PF13098 Thioredoxin-like domain M1S42_20015 PF06834 TraU protein M1S42_20025 PF06986 Type-1V conjugative transfer system mating pair stabilisation M1S42_20040 PF06122 Conjugative relaxosome accessory transposon protein M1S42_20060 PF11799 impB/mucB/samB family C-terminal domain M1S42_20060 PF13438 Domain of unknown function (DUF4113) M1S42_20060 PF00817 impB/mucB/samB family M1S42_20150 PF00565 Staphylococcal nuclease homologue M1S42_20155 PF00816 H-NS histone family