locus-tag class description M1S39_00005 PF00308 Bacterial dnaA protein M1S39_00005 PF08299 Bacterial dnaA protein helix-turn-helix M1S39_00005 PF11638 DnaA N-terminal domain M1S39_00010 PF00712 DNA polymerase III beta subunit, N-terminal domain M1S39_00010 PF02767 DNA polymerase III beta subunit, central domain M1S39_00010 PF02768 DNA polymerase III beta subunit, C-terminal domain M1S39_00015 PF02463 RecF/RecN/SMC N terminal domain M1S39_00020 PF00204 DNA gyrase B M1S39_00020 PF00986 DNA gyrase B subunit, carboxyl terminus M1S39_00020 PF18053 DNA gyrase B subunit insert domain M1S39_00020 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M1S39_00020 PF01751 Toprim domain M1S39_00030 PF09335 SNARE associated Golgi protein M1S39_00035 PF00005 ABC transporter M1S39_00035 PF12848 ABC transporter M1S39_00055 PF01521 Iron-sulphur cluster biosynthesis M1S39_00060 PF00561 alpha/beta hydrolase fold M1S39_00065 PF03702 Anhydro-N-acetylmuramic acid kinase M1S39_00070 PF00579 tRNA synthetases class I (W and Y) M1S39_00110 PF00209 Sodium:neurotransmitter symporter family M1S39_00120 PF01189 16S rRNA methyltransferase RsmB/F M1S39_00120 PF01029 NusB family M1S39_00125 PF02911 Formyl transferase, C-terminal domain M1S39_00125 PF00551 Formyl transferase M1S39_00130 PF00920 Dehydratase family M1S39_00145 PF03466 LysR substrate binding domain M1S39_00145 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M1S39_00150 PF00860 Permease family M1S39_00155 PF00311 Phosphoenolpyruvate carboxylase M1S39_00160 PF08361 MAATS-type transcriptional repressor, C-terminal region M1S39_00160 PF00440 Bacterial regulatory proteins, tetR family M1S39_00165 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion M1S39_00170 PF00873 AcrB/AcrD/AcrF family M1S39_00180 PF00684 DnaJ central domain M1S39_00180 PF01556 DnaJ C terminal domain M1S39_00180 PF00226 DnaJ domain M1S39_00190 PF05173 Dihydrodipicolinate reductase, C-terminus M1S39_00190 PF01113 Dihydrodipicolinate reductase, N-terminus M1S39_00200 PF07690 Major Facilitator Superfamily M1S39_00205 PF00248 Aldo/keto reductase family M1S39_00210 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M1S39_00210 PF03466 LysR substrate binding domain M1S39_00225 PF00392 Bacterial regulatory proteins, gntR family M1S39_00225 PF00155 Aminotransferase class I and II M1S39_00230 PF08240 Alcohol dehydrogenase GroES-like domain M1S39_00230 PF00107 Zinc-binding dehydrogenase M1S39_00235 PF03352 Methyladenine glycosylase M1S39_00250 PF14815 NUDIX domain M1S39_00250 PF00730 HhH-GPD superfamily base excision DNA repair protein M1S39_00250 PF00633 Helix-hairpin-helix motif M1S39_00250 PF10576 Iron-sulfur binding domain of endonuclease III M1S39_00265 PF07043 Protein of unknown function (DUF1328) M1S39_00270 PF03692 Putative zinc- or iron-chelating domain M1S39_00275 PF07995 Glucose / Sorbosone dehydrogenase M1S39_00280 PF00004 ATPase family associated with various cellular activities (AAA) M1S39_00280 PF16193 AAA C-terminal domain M1S39_00280 PF12002 MgsA AAA+ ATPase C terminal M1S39_00285 PF01226 Formate/nitrite transporter M1S39_00295 PF01259 SAICAR synthetase M1S39_00305 PF00701 Dihydrodipicolinate synthetase family M1S39_00310 PF00857 Isochorismatase family M1S39_00315 PF01758 Sodium Bile acid symporter family M1S39_00320 PF01554 MatE M1S39_00325 PF04463 Protein of unknown function (DUF523) M1S39_00330 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily M1S39_00340 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily M1S39_00345 PF02798 Glutathione S-transferase, N-terminal domain M1S39_00345 PF14497 Glutathione S-transferase, C-terminal domain M1S39_00355 PF00324 Amino acid permease M1S39_00365 PF07683 Cobalamin synthesis protein cobW C-terminal domain M1S39_00365 PF02492 CobW/HypB/UreG, nucleotide-binding domain M1S39_00380 PF05962 HutD M1S39_00385 PF17392 Urocanase C-terminal domain M1S39_00385 PF17391 Urocanase N-terminal domain M1S39_00385 PF01175 Urocanase Rossmann-like domain M1S39_00390 PF00221 Aromatic amino acid lyase M1S39_00395 PF00324 Amino acid permease M1S39_00400 PF01979 Amidohydrolase family M1S39_00405 PF00491 Arginase family M1S39_00420 PF01177 Asp/Glu/Hydantoin racemase M1S39_00425 PF01380 SIS domain M1S39_00430 PF00132 Bacterial transferase hexapeptide (six repeats) M1S39_00430 PF14602 Hexapeptide repeat of succinyl-transferase M1S39_00430 PF12804 MobA-like NTP transferase domain M1S39_00435 PF04608 Phosphatidylglycerophosphatase A M1S39_00440 PF02769 AIR synthase related protein, C-terminal domain M1S39_00440 PF00586 AIR synthase related protein, N-terminal domain M1S39_00445 PF01029 NusB family M1S39_00450 PF00885 6,7-dimethyl-8-ribityllumazine synthase M1S39_00455 PF00925 GTP cyclohydrolase II M1S39_00455 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase M1S39_00480 PF02580 D-Tyr-tRNA(Tyr) deacylase M1S39_00485 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family M1S39_00485 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain M1S39_00490 PF00581 Rhodanese-like domain M1S39_00495 PF02666 Phosphatidylserine decarboxylase M1S39_00500 PF03069 Acetamidase/Formamidase family M1S39_00520 PF11808 Phosphate regulon sensor protein PhoR M1S39_00520 PF00989 PAS fold M1S39_00520 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M1S39_00520 PF00512 His Kinase A (phospho-acceptor) domain M1S39_00525 PF00486 Transcriptional regulatory protein, C terminal M1S39_00525 PF00072 Response regulator receiver domain M1S39_00535 PF00106 short chain dehydrogenase M1S39_00540 PF01554 MatE M1S39_00545 PF00155 Aminotransferase class I and II M1S39_00550 PF04286 Protein of unknown function (DUF445) M1S39_00565 PF04262 Glutamate-cysteine ligase M1S39_00570 PF02600 Disulfide bond formation protein DsbB M1S39_00575 PF04717 Type VI secretion system, phage-baseplate injector M1S39_00575 PF10106 Uncharacterized protein conserved in bacteria (DUF2345) M1S39_00575 PF13296 Putative type VI secretion system Rhs element Vgr M1S39_00580 PF00877 NlpC/P60 family M1S39_00580 PF01476 LysM domain M1S39_00595 PF05728 Uncharacterised protein family (UPF0227) M1S39_00600 PF01751 Toprim domain M1S39_00600 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M1S39_00600 PF00986 DNA gyrase B subunit, carboxyl terminus M1S39_00600 PF00204 DNA gyrase B M1S39_00605 PF00106 short chain dehydrogenase M1S39_00610 PF04115 Ureidoglycolate lyase M1S39_00615 PF03561 Allantoicase repeat M1S39_00620 PF01494 FAD binding domain M1S39_00630 PF00860 Permease family M1S39_00635 PF00576 HIUase/Transthyretin family M1S39_00665 PF11412 Disulphide bond corrector protein DsbC M1S39_00665 PF02683 Cytochrome C biogenesis protein transmembrane region M1S39_00670 PF00990 Diguanylate cyclase, GGDEF domain M1S39_00670 PF07694 5TMR of 5TMR-LYT M1S39_00675 PF07859 alpha/beta hydrolase fold M1S39_00685 PF03960 ArsC family M1S39_00690 PF03372 Endonuclease/Exonuclease/phosphatase family M1S39_00695 PF00156 Phosphoribosyl transferase domain M1S39_00700 PF00593 TonB dependent receptor M1S39_00700 PF07715 TonB-dependent Receptor Plug Domain M1S39_00710 PF02951 Prokaryotic glutathione synthetase, N-terminal domain M1S39_00710 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain M1S39_00715 PF03033 Glycosyltransferase family 28 N-terminal domain M1S39_00715 PF04101 Glycosyltransferase family 28 C-terminal domain M1S39_00720 PF08245 Mur ligase middle domain M1S39_00720 PF02875 Mur ligase family, glutamate ligase domain M1S39_00720 PF01225 Mur ligase family, catalytic domain M1S39_00725 PF01820 D-ala D-ala ligase N-terminus M1S39_00725 PF07478 D-ala D-ala ligase C-terminus M1S39_00730 PF08478 POTRA domain, FtsQ-type M1S39_00730 PF03799 Cell division protein FtsQ M1S39_00735 PF02491 SHS2 domain inserted in FTSA M1S39_00740 PF00091 Tubulin/FtsZ family, GTPase domain M1S39_00740 PF12327 FtsZ family, C-terminal domain M1S39_00745 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase M1S39_00755 PF01551 Peptidase family M23 M1S39_00760 PF00456 Transketolase, thiamine diphosphate binding domain M1S39_00760 PF17831 Pyruvate dehydrogenase E1 component middle domain M1S39_00765 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) M1S39_00765 PF00364 Biotin-requiring enzyme M1S39_00765 PF02817 e3 binding domain M1S39_00775 PF01169 Uncharacterized protein family UPF0016 M1S39_00795 PF00258 Flavodoxin M1S39_00795 PF01613 Flavin reductase like domain M1S39_00800 PF03692 Putative zinc- or iron-chelating domain M1S39_00805 PF00571 CBS domain M1S39_00805 PF00478 IMP dehydrogenase / GMP reductase domain M1S39_00810 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III M1S39_00810 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain M1S39_00810 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I M1S39_00810 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II M1S39_00815 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region M1S39_00815 PF01243 Pyridoxamine 5'-phosphate oxidase M1S39_00820 PF02272 DHHA1 domain M1S39_00820 PF17768 RecJ OB domain M1S39_00820 PF01368 DHH family M1S39_00840 PF00724 NADH:flavin oxidoreductase / NADH oxidase family M1S39_00845 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) M1S39_00850 PF04452 RNA methyltransferase M1S39_00855 PF00924 Mechanosensitive ion channel M1S39_00865 PF00501 AMP-binding enzyme M1S39_00865 PF13193 AMP-binding enzyme C-terminal domain M1S39_00865 PF16177 Acetyl-coenzyme A synthetase N-terminus M1S39_00870 PF00857 Isochorismatase family M1S39_00875 PF01037 Lrp/AsnC ligand binding domain M1S39_00880 PF00872 Transposase, Mutator family M1S39_00885 PF00296 Luciferase-like monooxygenase M1S39_00890 PF03358 NADPH-dependent FMN reductase M1S39_00895 PF00196 Bacterial regulatory proteins, luxR family M1S39_00895 PF00072 Response regulator receiver domain M1S39_00905 PF00672 HAMP domain M1S39_00905 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M1S39_00905 PF01627 Hpt domain M1S39_00905 PF00072 Response regulator receiver domain M1S39_00905 PF00512 His Kinase A (phospho-acceptor) domain M1S39_00910 PF04341 Protein of unknown function, DUF485 M1S39_00915 PF00474 Sodium:solute symporter family M1S39_00925 PF02028 BCCT, betaine/carnitine/choline family transporter M1S39_00935 PF00990 Diguanylate cyclase, GGDEF domain M1S39_00945 PF00005 ABC transporter M1S39_00945 PF17760 UvrA interaction domain M1S39_00945 PF17755 UvrA DNA-binding domain M1S39_00950 PF00440 Bacterial regulatory proteins, tetR family M1S39_00950 PF16925 Tetracyclin repressor-like, C-terminal domain M1S39_00955 PF00107 Zinc-binding dehydrogenase M1S39_00955 PF08240 Alcohol dehydrogenase GroES-like domain M1S39_00965 PF06942 GlpM protein M1S39_00970 PF02581 Thiamine monophosphate synthase M1S39_00970 PF03070 TENA/THI-4/PQQC family M1S39_00970 PF08543 Phosphomethylpyrimidine kinase M1S39_00980 PF07690 Major Facilitator Superfamily M1S39_00985 PF00436 Single-strand binding protein family M1S39_00995 PF03591 AzlC protein M1S39_01005 PF00324 Amino acid permease M1S39_01010 PF00155 Aminotransferase class I and II M1S39_01010 PF00392 Bacterial regulatory proteins, gntR family M1S39_01015 PF00202 Aminotransferase class-III M1S39_01020 PF00171 Aldehyde dehydrogenase family M1S39_01025 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M1S39_01030 PF00857 Isochorismatase family M1S39_01035 PF05726 Pirin C-terminal cupin domain M1S39_01035 PF02678 Pirin M1S39_01040 PF01593 Flavin containing amine oxidoreductase M1S39_01060 PF07690 Major Facilitator Superfamily M1S39_01065 PF03466 LysR substrate binding domain M1S39_01065 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M1S39_01085 PF00248 Aldo/keto reductase family M1S39_01090 PF02311 AraC-like ligand binding domain M1S39_01090 PF12833 Helix-turn-helix domain M1S39_01120 PF01638 HxlR-like helix-turn-helix M1S39_01125 PF02525 Flavodoxin-like fold M1S39_01150 PF02705 K+ potassium transporter M1S39_01175 PF00230 Major intrinsic protein M1S39_01190 PF00977 Histidine biosynthesis protein M1S39_01195 PF01636 Phosphotransferase enzyme family M1S39_01210 PF03992 Antibiotic biosynthesis monooxygenase M1S39_01225 PF00977 Histidine biosynthesis protein M1S39_01240 PF00117 Glutamine amidotransferase class-I M1S39_01245 PF00475 Imidazoleglycerol-phosphate dehydratase M1S39_01265 PF00583 Acetyltransferase (GNAT) family M1S39_01270 PF02550 Acetyl-CoA hydrolase/transferase N-terminal domain M1S39_01270 PF13336 Acetyl-CoA hydrolase/transferase C-terminal domain M1S39_01280 PF00672 HAMP domain M1S39_01280 PF00512 His Kinase A (phospho-acceptor) domain M1S39_01280 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M1S39_01285 PF00486 Transcriptional regulatory protein, C terminal M1S39_01285 PF00072 Response regulator receiver domain M1S39_01290 PF00575 S1 RNA binding domain M1S39_01290 PF09371 Tex-like protein N-terminal domain M1S39_01290 PF16921 Tex protein YqgF-like domain M1S39_01290 PF17674 HHH domain M1S39_01295 PF01740 STAS domain M1S39_01295 PF00916 Sulfate permease family M1S39_01300 PF00106 short chain dehydrogenase M1S39_01305 PF01053 Cys/Met metabolism PLP-dependent enzyme M1S39_01310 PF12848 ABC transporter M1S39_01310 PF00005 ABC transporter M1S39_01335 PF04191 Phospholipid methyltransferase M1S39_01355 PF00529 HlyD membrane-fusion protein of T1SS M1S39_01355 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion M1S39_01360 PF00873 AcrB/AcrD/AcrF family M1S39_01365 PF01545 Cation efflux family M1S39_01395 PF00324 Amino acid permease M1S39_01410 PF00749 tRNA synthetases class I (E and Q), catalytic domain M1S39_01425 PF01795 MraW methylase family M1S39_01435 PF00905 Penicillin binding protein transpeptidase domain M1S39_01435 PF03717 Penicillin-binding Protein dimerisation domain M1S39_01440 PF08245 Mur ligase middle domain M1S39_01440 PF02875 Mur ligase family, glutamate ligase domain M1S39_01440 PF01225 Mur ligase family, catalytic domain M1S39_01445 PF08245 Mur ligase middle domain M1S39_01445 PF02875 Mur ligase family, glutamate ligase domain M1S39_01445 PF01225 Mur ligase family, catalytic domain M1S39_01450 PF00953 Glycosyl transferase family 4 M1S39_01460 PF13847 Methyltransferase domain M1S39_01465 PF17092 Penicillin-binding protein OB-like domain M1S39_01465 PF00912 Transglycosylase M1S39_01465 PF00905 Penicillin binding protein transpeptidase domain M1S39_01470 PF11104 Type IV pilus assembly protein PilM; M1S39_01475 PF05137 Fimbrial assembly protein (PilN) M1S39_01480 PF04350 Pilus assembly protein, PilO M1S39_01490 PF00263 Bacterial type II and III secretion system protein M1S39_01490 PF03958 Bacterial type II/III secretion system short domain M1S39_01490 PF07660 Secretin and TonB N terminus short domain M1S39_01490 PF11741 AMIN domain M1S39_01495 PF01202 Shikimate kinase M1S39_01500 PF01761 3-dehydroquinate synthase M1S39_01510 PF04898 Glutamate synthase central domain M1S39_01510 PF01493 GXGXG motif M1S39_01510 PF01645 Conserved region in glutamate synthase M1S39_01510 PF00310 Glutamine amidotransferases class-II M1S39_01515 PF07992 Pyridine nucleotide-disulphide oxidoreductase M1S39_01515 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster M1S39_01525 PF04011 LemA family M1S39_01530 PF04536 TPM domain M1S39_01540 PF00114 Pilin (bacterial filament) M1S39_01540 PF07963 Prokaryotic N-terminal methylation motif M1S39_01550 PF15864 Protein glycosylation ligase M1S39_01550 PF04932 O-Antigen ligase M1S39_01550 PF11846 Virulence factor membrane-bound polymerase, C-terminal M1S39_01555 PF00210 Ferritin-like domain M1S39_01560 PF04324 BFD-like [2Fe-2S] binding domain M1S39_01565 PF01042 Endoribonuclease L-PSP M1S39_01570 PF02824 TGS domain M1S39_01570 PF13291 ACT domain M1S39_01570 PF04607 Region found in RelA / SpoT proteins M1S39_01580 PF01192 RNA polymerase Rpb6 M1S39_01585 PF00625 Guanylate kinase M1S39_01590 PF02401 LytB protein M1S39_01630 PF00886 Ribosomal protein S16 M1S39_01635 PF01782 RimM N-terminal domain M1S39_01635 PF05239 PRC-barrel domain M1S39_01640 PF01746 tRNA (Guanine-1)-methyltransferase M1S39_01645 PF01245 Ribosomal protein L19 M1S39_01650 PF00561 alpha/beta hydrolase fold M1S39_01655 PF03280 Proteobacterial lipase chaperone protein M1S39_01660 PF09157 Pseudouridine synthase II TruB, C-terminal M1S39_01660 PF16198 tRNA pseudouridylate synthase B C-terminal domain M1S39_01660 PF01509 TruB family pseudouridylate synthase (N terminal domain) M1S39_01665 PF01925 Sulfite exporter TauE/SafE M1S39_01675 PF00892 EamA-like transporter family M1S39_01680 PF00892 EamA-like transporter family M1S39_01685 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain M1S39_01685 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain M1S39_01690 PF02913 FAD linked oxidases, C-terminal domain M1S39_01690 PF01565 FAD binding domain M1S39_01700 PF03992 Antibiotic biosynthesis monooxygenase M1S39_01705 PF02525 Flavodoxin-like fold M1S39_01715 PF07690 Major Facilitator Superfamily M1S39_01720 PF12805 FUSC-like inner membrane protein yccS M1S39_01725 PF00080 Copper/zinc superoxide dismutase (SODC) M1S39_01730 PF01594 AI-2E family transporter M1S39_01735 PF13614 AAA domain M1S39_01765 PF00324 Amino acid permease M1S39_01770 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain M1S39_01770 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase M1S39_01775 PF00202 Aminotransferase class-III M1S39_01780 PF04958 Arginine N-succinyltransferase beta subunit M1S39_01785 PF00171 Aldehyde dehydrogenase family M1S39_01790 PF04996 Succinylarginine dihydrolase M1S39_01795 PF04952 Succinylglutamate desuccinylase / Aspartoacylase family M1S39_01810 PF00082 Subtilase family M1S39_01810 PF05922 Peptidase inhibitor I9 M1S39_01825 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M1S39_01825 PF03466 LysR substrate binding domain M1S39_01830 PF00892 EamA-like transporter family M1S39_01840 PF05746 DALR anticodon binding domain M1S39_01840 PF02092 Glycyl-tRNA synthetase beta subunit M1S39_01845 PF02091 Glycyl-tRNA synthetase alpha subunit M1S39_01870 PF00571 CBS domain M1S39_01875 PF04024 PspC domain M1S39_01885 PF00441 Acyl-CoA dehydrogenase, C-terminal domain M1S39_01885 PF12806 Acetyl-CoA dehydrogenase C-terminal like M1S39_01885 PF02771 Acyl-CoA dehydrogenase, N-terminal domain M1S39_01885 PF02770 Acyl-CoA dehydrogenase, middle domain M1S39_01895 PF08501 Shikimate dehydrogenase substrate binding domain M1S39_01895 PF01488 Shikimate / quinate 5-dehydrogenase M1S39_01895 PF18317 Shikimate 5'-dehydrogenase C-terminal domain M1S39_01900 PF01218 Coproporphyrinogen III oxidase M1S39_01905 PF00925 GTP cyclohydrolase II M1S39_01910 PF02779 Transketolase, pyrimidine binding domain M1S39_01910 PF13292 1-deoxy-D-xylulose-5-phosphate synthase M1S39_01910 PF02780 Transketolase, C-terminal domain M1S39_01915 PF00459 Inositol monophosphatase family M1S39_01920 PF00271 Helicase conserved C-terminal domain M1S39_01920 PF12343 Cold shock protein DEAD box A M1S39_01920 PF00270 DEAD/DEAH box helicase M1S39_01920 PF03880 DbpA RNA binding domain M1S39_01930 PF00005 ABC transporter M1S39_01935 PF02405 Permease MlaE M1S39_01945 PF05494 MlaC protein M1S39_01955 PF01544 CorA-like Mg2+ transporter protein M1S39_01960 PF03641 Possible lysine decarboxylase M1S39_01965 PF00293 NUDIX domain M1S39_01970 PF00156 Phosphoribosyl transferase domain M1S39_01975 PF00271 Helicase conserved C-terminal domain M1S39_01975 PF00270 DEAD/DEAH box helicase M1S39_01975 PF17191 RecG wedge domain M1S39_01990 PF01553 Acyltransferase M1S39_02000 PF00375 Sodium:dicarboxylate symporter family M1S39_02010 PF01926 50S ribosome-binding GTPase M1S39_02015 PF02082 Transcriptional regulator M1S39_02020 PF00970 Oxidoreductase FAD-binding domain M1S39_02020 PF00042 Globin M1S39_02020 PF00175 Oxidoreductase NAD-binding domain M1S39_02025 PF05872 Bacterial protein of unknown function (DUF853) M1S39_02030 PF01053 Cys/Met metabolism PLP-dependent enzyme M1S39_02035 PF00117 Glutamine amidotransferase class-I M1S39_02040 PF00338 Ribosomal protein S10p/S20e M1S39_02045 PF00297 Ribosomal protein L3 M1S39_02050 PF00573 Ribosomal protein L4/L1 family M1S39_02055 PF00276 Ribosomal protein L23 M1S39_02060 PF03947 Ribosomal Proteins L2, C-terminal domain M1S39_02060 PF00181 Ribosomal Proteins L2, RNA binding domain M1S39_02065 PF00203 Ribosomal protein S19 M1S39_02070 PF00237 Ribosomal protein L22p/L17e M1S39_02080 PF00252 Ribosomal protein L16p/L10e M1S39_02085 PF00831 Ribosomal L29 protein M1S39_02090 PF00366 Ribosomal protein S17 M1S39_02095 PF00238 Ribosomal protein L14p/L23e M1S39_02100 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 M1S39_02100 PF00467 KOW motif M1S39_02105 PF00673 ribosomal L5P family C-terminus M1S39_02105 PF00281 Ribosomal protein L5 M1S39_02110 PF00253 Ribosomal protein S14p/S29e M1S39_02115 PF00410 Ribosomal protein S8 M1S39_02120 PF00347 Ribosomal protein L6 M1S39_02125 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast M1S39_02130 PF03719 Ribosomal protein S5, C-terminal domain M1S39_02130 PF00333 Ribosomal protein S5, N-terminal domain M1S39_02135 PF00327 Ribosomal protein L30p/L7e M1S39_02140 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A M1S39_02145 PF00344 SecY translocase M1S39_02150 PF00444 Ribosomal protein L36 M1S39_02155 PF00416 Ribosomal protein S13/S18 M1S39_02160 PF00411 Ribosomal protein S11 M1S39_02165 PF00163 Ribosomal protein S4/S9 N-terminal domain M1S39_02165 PF01479 S4 domain M1S39_02170 PF01000 RNA polymerase Rpb3/RpoA insert domain M1S39_02170 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain M1S39_02170 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain M1S39_02175 PF01196 Ribosomal protein L17 M1S39_02180 PF00743 Flavin-binding monooxygenase-like M1S39_02185 PF00441 Acyl-CoA dehydrogenase, C-terminal domain M1S39_02185 PF02770 Acyl-CoA dehydrogenase, middle domain M1S39_02185 PF02771 Acyl-CoA dehydrogenase, N-terminal domain M1S39_02190 PF03937 Flavinator of succinate dehydrogenase M1S39_02220 PF09526 Probable metal-binding protein (DUF2387) M1S39_02225 PF01432 Peptidase family M3 M1S39_02230 PF08461 Ribonuclease R winged-helix domain M1S39_02230 PF17876 Cold shock domain M1S39_02230 PF08206 Ribonuclease B OB domain M1S39_02230 PF00575 S1 RNA binding domain M1S39_02230 PF00773 RNB domain M1S39_02275 PF01557 Fumarylacetoacetate (FAA) hydrolase family M1S39_02280 PF12833 Helix-turn-helix domain M1S39_02285 PF00892 EamA-like transporter family M1S39_02290 PF03631 Virulence factor BrkB M1S39_02295 PF03358 NADPH-dependent FMN reductase M1S39_02320 PF02130 Uncharacterized protein family UPF0054 M1S39_02325 PF02562 PhoH-like protein M1S39_02330 PF01938 TRAM domain M1S39_02330 PF04055 Radical SAM superfamily M1S39_02330 PF00919 Uncharacterized protein family UPF0004 M1S39_02335 PF10145 Phage-related minor tail protein M1S39_02335 PF01464 Transglycosylase SLT domain M1S39_02335 PF01551 Peptidase family M23 M1S39_02345 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain M1S39_02345 PF00056 lactate/malate dehydrogenase, NAD binding domain M1S39_02365 PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ M1S39_02370 PF01066 CDP-alcohol phosphatidyltransferase M1S39_02415 PF00441 Acyl-CoA dehydrogenase, C-terminal domain M1S39_02415 PF02770 Acyl-CoA dehydrogenase, middle domain M1S39_02415 PF02771 Acyl-CoA dehydrogenase, N-terminal domain M1S39_02420 PF17932 Tetracyclin repressor-like, C-terminal domain M1S39_02420 PF00440 Bacterial regulatory proteins, tetR family M1S39_02435 PF01039 Carboxyl transferase domain M1S39_02440 PF02770 Acyl-CoA dehydrogenase, middle domain M1S39_02440 PF00441 Acyl-CoA dehydrogenase, C-terminal domain M1S39_02440 PF02771 Acyl-CoA dehydrogenase, N-terminal domain M1S39_02450 PF02785 Biotin carboxylase C-terminal domain M1S39_02450 PF00289 Biotin carboxylase, N-terminal domain M1S39_02450 PF00364 Biotin-requiring enzyme M1S39_02450 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain M1S39_02460 PF04386 Stringent starvation protein B M1S39_02465 PF00043 Glutathione S-transferase, C-terminal domain M1S39_02465 PF13417 Glutathione S-transferase, N-terminal domain M1S39_02470 PF00380 Ribosomal protein S9/S16 M1S39_02475 PF00572 Ribosomal protein L13 M1S39_02480 PF04166 Pyridoxal phosphate biosynthetic protein PdxA M1S39_02485 PF00398 Ribosomal RNA adenine dimethylase M1S39_02490 PF00149 Calcineurin-like phosphoesterase M1S39_02510 PF16360 GTP-binding GTPase Middle Region M1S39_02510 PF13167 GTP-binding GTPase N-terminal M1S39_02510 PF01926 50S ribosome-binding GTPase M1S39_02520 PF13091 PLD-like domain M1S39_02525 PF00149 Calcineurin-like phosphoesterase M1S39_02525 PF10518 TAT (twin-arginine translocation) pathway signal sequence M1S39_02530 PF00691 OmpA family M1S39_02530 PF01389 OmpA-like transmembrane domain M1S39_02535 PF17152 Periplasmic sensor domain M1S39_02535 PF00990 Diguanylate cyclase, GGDEF domain M1S39_02570 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain M1S39_02570 PF07992 Pyridine nucleotide-disulphide oxidoreductase M1S39_02580 PF04273 Putative phosphatase (DUF442) M1S39_02580 PF00753 Metallo-beta-lactamase superfamily M1S39_02585 PF00561 alpha/beta hydrolase fold M1S39_02590 PF00085 Thioredoxin M1S39_02595 PF03061 Thioesterase superfamily M1S39_02605 PF04461 Protein of unknown function (DUF520) M1S39_02615 PF05430 S-adenosyl-L-methionine-dependent methyltransferase M1S39_02615 PF01266 FAD dependent oxidoreductase M1S39_02625 PF03795 YCII-related domain M1S39_02630 PF04279 Intracellular septation protein A M1S39_02635 PF02811 PHP domain M1S39_02640 PF01062 Bestrophin, RFP-TM, chloride channel M1S39_02645 PF04002 RadC-like JAB domain M1S39_02650 PF02441 Flavoprotein M1S39_02650 PF04127 DNA / pantothenate metabolism flavoprotein M1S39_02655 PF02355 Protein export membrane protein M1S39_02655 PF07549 SecD/SecF GG Motif M1S39_02660 PF02355 Protein export membrane protein M1S39_02660 PF13721 SecD export protein N-terminal TM region M1S39_02660 PF07549 SecD/SecF GG Motif M1S39_02665 PF02699 Preprotein translocase subunit M1S39_02670 PF01702 Queuine tRNA-ribosyltransferase M1S39_02685 PF02547 Queuosine biosynthesis protein M1S39_02715 PF07689 KaiB domain M1S39_02715 PF00512 His Kinase A (phospho-acceptor) domain M1S39_02715 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M1S39_02720 PF08335 GlnD PII-uridylyltransferase M1S39_02720 PF03710 Glutamate-ammonia ligase adenylyltransferase M1S39_02725 PF01063 Amino-transferase class IV M1S39_02740 PF01522 Polysaccharide deacetylase M1S39_02745 PF00535 Glycosyl transferase family 2 M1S39_02750 PF00534 Glycosyl transferases group 1 M1S39_02750 PF13439 Glycosyltransferase Family 4 M1S39_02775 PF17101 Stealth protein CR1, conserved region 1 M1S39_02775 PF11380 Stealth protein CR2, conserved region 2 M1S39_02775 PF17102 Stealth protein CR3, conserved region 3 M1S39_02780 PF02938 GAD domain M1S39_02780 PF00152 tRNA synthetases class II (D, K and N) M1S39_02780 PF01336 OB-fold nucleic acid binding domain M1S39_02790 PF07715 TonB-dependent Receptor Plug Domain M1S39_02790 PF00593 TonB dependent receptor M1S39_02810 PF06146 Phosphate-starvation-inducible E M1S39_02815 PF02798 Glutathione S-transferase, N-terminal domain M1S39_02815 PF00043 Glutathione S-transferase, C-terminal domain M1S39_02820 PF03466 LysR substrate binding domain M1S39_02820 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M1S39_02825 PF12806 Acetyl-CoA dehydrogenase C-terminal like M1S39_02825 PF00441 Acyl-CoA dehydrogenase, C-terminal domain M1S39_02825 PF02771 Acyl-CoA dehydrogenase, N-terminal domain M1S39_02825 PF02770 Acyl-CoA dehydrogenase, middle domain M1S39_02830 PF12806 Acetyl-CoA dehydrogenase C-terminal like M1S39_02830 PF00441 Acyl-CoA dehydrogenase, C-terminal domain M1S39_02830 PF02770 Acyl-CoA dehydrogenase, middle domain M1S39_02830 PF02771 Acyl-CoA dehydrogenase, N-terminal domain M1S39_02840 PF00672 HAMP domain M1S39_02840 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M1S39_02840 PF00512 His Kinase A (phospho-acceptor) domain M1S39_02845 PF00486 Transcriptional regulatory protein, C terminal M1S39_02845 PF00072 Response regulator receiver domain M1S39_02850 PF02696 Uncharacterized ACR, YdiU/UPF0061 family M1S39_02870 PF01923 Cobalamin adenosyltransferase M1S39_02875 PF00593 TonB dependent receptor M1S39_02875 PF07715 TonB-dependent Receptor Plug Domain M1S39_02880 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase M1S39_02885 PF00291 Pyridoxal-phosphate dependent enzyme M1S39_02910 PF00290 Tryptophan synthase alpha chain M1S39_02915 PF01039 Carboxyl transferase domain M1S39_02920 PF02875 Mur ligase family, glutamate ligase domain M1S39_02920 PF08245 Mur ligase middle domain M1S39_02935 PF00753 Metallo-beta-lactamase superfamily M1S39_02940 PF10417 C-terminal domain of 1-Cys peroxiredoxin M1S39_02940 PF00578 AhpC/TSA family M1S39_02945 PF01043 SecA preprotein cross-linking domain M1S39_02945 PF07517 SecA DEAD-like domain M1S39_02945 PF07516 SecA Wing and Scaffold domain M1S39_02945 PF02810 SEC-C motif M1S39_02955 PF00083 Sugar (and other) transporter M1S39_02955 PF07690 Major Facilitator Superfamily M1S39_02960 PF03006 Haemolysin-III related M1S39_02985 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain M1S39_02985 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain M1S39_02985 PF00378 Enoyl-CoA hydratase/isomerase M1S39_02990 PF02803 Thiolase, C-terminal domain M1S39_02990 PF00108 Thiolase, N-terminal domain M1S39_02995 PF02311 AraC-like ligand binding domain M1S39_02995 PF12833 Helix-turn-helix domain M1S39_03000 PF02515 CoA-transferase family III M1S39_03005 PF04966 Carbohydrate-selective porin, OprB family M1S39_03010 PF01011 PQQ enzyme repeat M1S39_03015 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain M1S39_03015 PF01077 Nitrite and sulphite reductase 4Fe-4S domain M1S39_03025 PF00893 Small Multidrug Resistance protein M1S39_03035 PF02803 Thiolase, C-terminal domain M1S39_03035 PF00108 Thiolase, N-terminal domain M1S39_03045 PF13505 Outer membrane protein beta-barrel domain M1S39_03045 PF00691 OmpA family M1S39_03055 PF01139 tRNA-splicing ligase RtcB M1S39_03060 PF00324 Amino acid permease M1S39_03065 PF05175 Methyltransferase small domain M1S39_03065 PF08468 Methyltransferase small domain N-terminal M1S39_03070 PF00860 Permease family M1S39_03075 PF03144 Elongation factor Tu domain 2 M1S39_03075 PF00009 Elongation factor Tu GTP binding domain M1S39_03075 PF00679 Elongation factor G C-terminus M1S39_03080 PF01741 Large-conductance mechanosensitive channel, MscL M1S39_03095 PF06827 Zinc finger found in FPG and IleRS M1S39_03095 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain M1S39_03095 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain M1S39_03100 PF02245 Methylpurine-DNA glycosylase (MPG) M1S39_03120 PF00724 NADH:flavin oxidoreductase / NADH oxidase family M1S39_03135 PF13098 Thioredoxin-like domain M1S39_03135 PF10411 Disulfide bond isomerase protein N-terminus M1S39_03140 PF01571 Aminomethyltransferase folate-binding domain M1S39_03150 PF04343 Protein of unknown function, DUF488 M1S39_03155 PF03831 PhnA domain M1S39_03155 PF08274 PhnA Zinc-Ribbon M1S39_03160 PF07411 Domain of unknown function (DUF1508) M1S39_03165 PF04073 Aminoacyl-tRNA editing domain M1S39_03165 PF03129 Anticodon binding domain M1S39_03165 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) M1S39_03170 PF00873 AcrB/AcrD/AcrF family M1S39_03185 PF00072 Response regulator receiver domain M1S39_03190 PF00072 Response regulator receiver domain M1S39_03195 PF01584 CheW-like domain M1S39_03200 PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term M1S39_03200 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain M1S39_03205 PF01584 CheW-like domain M1S39_03205 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M1S39_03205 PF01627 Hpt domain M1S39_03205 PF00072 Response regulator receiver domain M1S39_03215 PF01546 Peptidase family M20/M25/M40 M1S39_03215 PF07687 Peptidase dimerisation domain M1S39_03220 PF08085 Entericidin EcnA/B family M1S39_03230 PF04304 Protein of unknown function (DUF454) M1S39_03235 PF17969 L,D-transpeptidase C-terminal domain M1S39_03235 PF03734 L,D-transpeptidase catalytic domain M1S39_03275 PF00175 Oxidoreductase NAD-binding domain M1S39_03275 PF00258 Flavodoxin M1S39_03275 PF00667 FAD binding domain M1S39_03285 PF12805 FUSC-like inner membrane protein yccS M1S39_03290 PF07690 Major Facilitator Superfamily M1S39_03295 PF00881 Nitroreductase family M1S39_03310 PF01235 Sodium:alanine symporter family M1S39_03315 PF01734 Patatin-like phospholipase M1S39_03320 PF13291 ACT domain M1S39_03320 PF00291 Pyridoxal-phosphate dependent enzyme M1S39_03325 PF05992 SbmA/BacA-like family M1S39_03360 PF02934 GatB/GatE catalytic domain M1S39_03360 PF02637 GatB domain M1S39_03365 PF01425 Amidase M1S39_03370 PF02686 Glu-tRNAGln amidotransferase C subunit M1S39_03380 PF04085 rod shape-determining protein MreC M1S39_03385 PF04093 rod shape-determining protein MreD M1S39_03390 PF02545 Maf-like protein M1S39_03395 PF00575 S1 RNA binding domain M1S39_03395 PF10150 Ribonuclease E/G family M1S39_03405 PF06974 Protein of unknown function (DUF1298) M1S39_03405 PF03007 Wax ester synthase-like Acyl-CoA acyltransferase domain M1S39_03410 PF01507 Phosphoadenosine phosphosulfate reductase family M1S39_03425 PF02525 Flavodoxin-like fold M1S39_03445 PF02673 Bacitracin resistance protein BacA M1S39_03450 PF06719 AraC-type transcriptional regulator N-terminus M1S39_03450 PF12833 Helix-turn-helix domain M1S39_03455 PF00698 Acyl transferase domain M1S39_03455 PF14765 Polyketide synthase dehydratase M1S39_03455 PF08659 KR domain M1S39_03455 PF00109 Beta-ketoacyl synthase, N-terminal domain M1S39_03455 PF00550 Phosphopantetheine attachment site M1S39_03455 PF09277 Erythronolide synthase, docking M1S39_03455 PF08990 Erythronolide synthase docking M1S39_03455 PF08240 Alcohol dehydrogenase GroES-like domain M1S39_03455 PF16197 Ketoacyl-synthetase C-terminal extension M1S39_03455 PF02801 Beta-ketoacyl synthase, C-terminal domain M1S39_03460 PF01965 DJ-1/PfpI family M1S39_03470 PF00324 Amino acid permease M1S39_03475 PF04303 PrpF protein M1S39_03480 PF00348 Polyprenyl synthetase M1S39_03485 PF04237 YjbR M1S39_03490 PF01145 SPFH domain / Band 7 family M1S39_03500 PF01734 Patatin-like phospholipase M1S39_03525 PF00486 Transcriptional regulatory protein, C terminal M1S39_03525 PF00072 Response regulator receiver domain M1S39_03530 PF08521 Two-component sensor kinase N-terminal M1S39_03530 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M1S39_03530 PF00512 His Kinase A (phospho-acceptor) domain M1S39_03540 PF00909 Ammonium Transporter Family M1S39_03545 PF03466 LysR substrate binding domain M1S39_03545 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M1S39_03565 PF10458 Valyl tRNA synthetase tRNA binding arm M1S39_03565 PF00133 tRNA synthetases class I (I, L, M and V) M1S39_03565 PF08264 Anticodon-binding domain of tRNA M1S39_03585 PF01906 Putative heavy-metal-binding M1S39_03590 PF01906 Putative heavy-metal-binding M1S39_03595 PF02321 Outer membrane efflux protein M1S39_03600 PF00873 AcrB/AcrD/AcrF family M1S39_03605 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion M1S39_03605 PF00529 HlyD membrane-fusion protein of T1SS M1S39_03610 PF01569 PAP2 superfamily M1S39_03620 PF00348 Polyprenyl synthetase M1S39_03630 PF00829 Ribosomal prokaryotic L21 protein M1S39_03635 PF01016 Ribosomal L27 protein M1S39_03640 PF03548 Outer membrane lipoprotein carrier protein LolA M1S39_03650 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) M1S39_03650 PF02403 Seryl-tRNA synthetase N-terminal domain M1S39_03655 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases M1S39_03655 PF14824 Sirohaem biosynthesis protein central M1S39_03655 PF10414 Sirohaem synthase dimerisation region M1S39_03660 PF00588 SpoU rRNA Methylase family M1S39_03665 PF01638 HxlR-like helix-turn-helix M1S39_03670 PF03358 NADPH-dependent FMN reductase M1S39_03675 PF13520 Amino acid permease M1S39_03680 PF00465 Iron-containing alcohol dehydrogenase M1S39_03690 PF03099 Biotin/lipoate A/B protein ligase family M1S39_03695 PF04359 Protein of unknown function (DUF493) M1S39_03700 PF04546 Sigma-70, non-essential region M1S39_03700 PF03979 Sigma-70 factor, region 1.1 M1S39_03700 PF00140 Sigma-70 factor, region 1.2 M1S39_03700 PF04542 Sigma-70 region 2 M1S39_03700 PF04545 Sigma-70, region 4 M1S39_03700 PF04539 Sigma-70 region 3 M1S39_03720 PF00581 Rhodanese-like domain M1S39_03720 PF17773 UPF0176 acylphosphatase like domain M1S39_03730 PF00285 Citrate synthase, C-terminal domain M1S39_03735 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit M1S39_03740 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit M1S39_03745 PF02910 Fumarate reductase flavoprotein C-term M1S39_03745 PF00890 FAD binding domain M1S39_03750 PF13085 2Fe-2S iron-sulfur cluster binding domain M1S39_03770 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) M1S39_03770 PF00364 Biotin-requiring enzyme M1S39_03770 PF02817 e3 binding domain M1S39_03775 PF07992 Pyridine nucleotide-disulphide oxidoreductase M1S39_03775 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain M1S39_03780 PF08442 ATP-grasp domain M1S39_03780 PF00549 CoA-ligase M1S39_03785 PF02629 CoA binding domain M1S39_03785 PF00549 CoA-ligase M1S39_03790 PF00579 tRNA synthetases class I (W and Y) M1S39_03795 PF05661 Protein of unknown function (DUF808) M1S39_03800 PF04228 Putative neutral zinc metallopeptidase M1S39_03805 PF00999 Sodium/hydrogen exchanger family M1S39_03820 PF09587 Bacterial capsule synthesis protein PGA_cap M1S39_03830 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain M1S39_03835 PF00582 Universal stress protein family M1S39_03840 PF00132 Bacterial transferase hexapeptide (six repeats) M1S39_03845 PF01272 Transcription elongation factor, GreA/GreB, C-term M1S39_03845 PF03449 Transcription elongation factor, N-terminal M1S39_03850 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain M1S39_03850 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain M1S39_03850 PF02142 MGS-like domain M1S39_03855 PF00117 Glutamine amidotransferase class-I M1S39_03855 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain M1S39_03870 PF01985 CRS1 / YhbY (CRM) domain M1S39_03875 PF01728 FtsJ-like methyltransferase M1S39_03880 PF00004 ATPase family associated with various cellular activities (AAA) M1S39_03880 PF17862 AAA+ lid domain M1S39_03880 PF06480 FtsH Extracellular M1S39_03880 PF01434 Peptidase family M41 M1S39_03885 PF00809 Pterin binding enzyme M1S39_03905 PF09423 PhoD-like phosphatase M1S39_03905 PF16655 PhoD-like phosphatase, N-terminal domain M1S39_03920 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain M1S39_03920 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain M1S39_03935 PF00083 Sugar (and other) transporter M1S39_03940 PF02782 FGGY family of carbohydrate kinases, C-terminal domain M1S39_03940 PF00370 FGGY family of carbohydrate kinases, N-terminal domain M1S39_03945 PF01266 FAD dependent oxidoreductase M1S39_03945 PF16901 C-terminal domain of alpha-glycerophosphate oxidase M1S39_03950 PF00821 Phosphoenolpyruvate carboxykinase C-terminal P-loop domain M1S39_03950 PF17297 Phosphoenolpyruvate carboxykinase N-terminal domain M1S39_03955 PF00781 Diacylglycerol kinase catalytic domain M1S39_03960 PF00149 Calcineurin-like phosphoesterase M1S39_03970 PF00166 Chaperonin 10 Kd subunit M1S39_03975 PF00118 TCP-1/cpn60 chaperonin family M1S39_03980 PF01219 Prokaryotic diacylglycerol kinase M1S39_03985 PF00753 Metallo-beta-lactamase superfamily M1S39_03990 PF03009 Glycerophosphoryl diester phosphodiesterase family M1S39_03995 PF00873 AcrB/AcrD/AcrF family M1S39_04005 PF01435 Peptidase family M48 M1S39_04010 PF01464 Transglycosylase SLT domain M1S39_04015 PF01171 PP-loop family M1S39_04030 PF01272 Transcription elongation factor, GreA/GreB, C-term M1S39_04030 PF03449 Transcription elongation factor, N-terminal M1S39_04045 PF00501 AMP-binding enzyme M1S39_04045 PF13193 AMP-binding enzyme C-terminal domain M1S39_04045 PF00668 Condensation domain M1S39_04045 PF00550 Phosphopantetheine attachment site M1S39_04045 PF00975 Thioesterase domain M1S39_04075 PF00881 Nitroreductase family M1S39_04090 PF02595 Glycerate kinase family M1S39_04095 PF00384 Molybdopterin oxidoreductase M1S39_04100 PF02634 FdhD/NarQ family M1S39_04105 PF06803 Protein of unknown function (DUF1232) M1S39_04110 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain M1S39_04110 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain M1S39_04110 PF11890 Domain of unknown function (DUF3410) M1S39_04115 PF00152 tRNA synthetases class II (D, K and N) M1S39_04125 PF18073 Rubredoxin metal binding domain M1S39_04130 PF00324 Amino acid permease M1S39_04140 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain M1S39_04140 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain M1S39_04145 PF01678 Diaminopimelate epimerase M1S39_04150 PF01810 LysE type translocator M1S39_04155 PF00589 Phage integrase family M1S39_04155 PF02899 Phage integrase, N-terminal SAM-like domain M1S39_04160 PF01012 Electron transfer flavoprotein domain M1S39_04165 PF00766 Electron transfer flavoprotein FAD-binding domain M1S39_04165 PF01012 Electron transfer flavoprotein domain M1S39_04170 PF00521 DNA gyrase/topoisomerase IV, subunit A M1S39_04170 PF03989 DNA gyrase C-terminal domain, beta-propeller M1S39_04185 PF00535 Glycosyl transferase family 2 M1S39_04205 PF13533 Biotin-lipoyl like M1S39_04215 PF00266 Aminotransferase class-V M1S39_04230 PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 M1S39_04240 PF02687 FtsX-like permease family M1S39_04240 PF12704 MacB-like periplasmic core domain M1S39_04245 PF00005 ABC transporter M1S39_04250 PF03772 Competence protein M1S39_04250 PF13567 Domain of unknown function (DUF4131) M1S39_04250 PF00753 Metallo-beta-lactamase superfamily M1S39_04260 PF06965 Na+/H+ antiporter 1 M1S39_04260 PF01343 Peptidase family S49 M1S39_04265 PF12697 Alpha/beta hydrolase family M1S39_04270 PF00551 Formyl transferase M1S39_04275 PF02769 AIR synthase related protein, C-terminal domain M1S39_04275 PF00586 AIR synthase related protein, N-terminal domain M1S39_04280 PF01594 AI-2E family transporter M1S39_04285 PF00308 Bacterial dnaA protein M1S39_04285 PF08299 Bacterial dnaA protein helix-turn-helix M1S39_04285 PF11638 DnaA N-terminal domain M1S39_04325 PF00588 SpoU rRNA Methylase family M1S39_04325 PF08032 RNA 2'-O ribose methyltransferase substrate binding M1S39_04330 PF00316 Fructose-1-6-bisphosphatase, N-terminal domain M1S39_04340 PF00691 OmpA family M1S39_04345 PF07676 WD40-like Beta Propeller Repeat M1S39_04345 PF04052 TolB amino-terminal domain M1S39_04355 PF02472 Biopolymer transport protein ExbD/TolR M1S39_04360 PF01618 MotA/TolQ/ExbB proton channel family M1S39_04365 PF03061 Thioesterase superfamily M1S39_04370 PF07687 Peptidase dimerisation domain M1S39_04370 PF01546 Peptidase family M20/M25/M40 M1S39_04375 PF17864 RuvB AAA lid domain M1S39_04375 PF05491 RuvB C-terminal winged helix domain M1S39_04375 PF05496 Holliday junction DNA helicase RuvB P-loop domain M1S39_04380 PF07499 RuvA, C-terminal domain M1S39_04380 PF01330 RuvA N terminal domain M1S39_04385 PF01966 HD domain M1S39_04390 PF02769 AIR synthase related protein, C-terminal domain M1S39_04390 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain M1S39_04390 PF18076 Formylglycinamide ribonucleotide amidotransferase N-terminal M1S39_04395 PF07690 Major Facilitator Superfamily M1S39_04400 PF01784 NIF3 (NGG1p interacting factor 3) M1S39_04405 PF00378 Enoyl-CoA hydratase/isomerase M1S39_04410 PF00293 NUDIX domain M1S39_04410 PF01467 Cytidylyltransferase-like M1S39_04420 PF00578 AhpC/TSA family M1S39_04435 PF06508 Queuosine biosynthesis protein QueC M1S39_04445 PF00132 Bacterial transferase hexapeptide (six repeats) M1S39_04445 PF14602 Hexapeptide repeat of succinyl-transferase M1S39_04445 PF14805 Tetrahydrodipicolinate N-succinyltransferase N-terminal M1S39_04455 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M1S39_04455 PF03466 LysR substrate binding domain M1S39_04460 PF00005 ABC transporter M1S39_04460 PF12857 TOBE-like domain M1S39_04465 PF00528 Binding-protein-dependent transport system inner membrane component M1S39_04470 PF00528 Binding-protein-dependent transport system inner membrane component M1S39_04485 PF01063 Amino-transferase class IV M1S39_04490 PF02618 YceG-like family M1S39_04495 PF02223 Thymidylate kinase M1S39_04505 PF00890 FAD binding domain M1S39_04505 PF02910 Fumarate reductase flavoprotein C-term M1S39_04510 PF13180 PDZ domain M1S39_04520 PF00009 Elongation factor Tu GTP binding domain M1S39_04520 PF00679 Elongation factor G C-terminus M1S39_04520 PF03144 Elongation factor Tu domain 2 M1S39_04520 PF06421 GTP-binding protein LepA C-terminus M1S39_04525 PF10502 Signal peptidase, peptidase S26 M1S39_04535 PF00035 Double-stranded RNA binding motif M1S39_04535 PF14622 Ribonuclease-III-like M1S39_04540 PF01926 50S ribosome-binding GTPase M1S39_04540 PF07650 KH domain M1S39_04550 PF11967 Recombination protein O N terminal M1S39_04550 PF02565 Recombination protein O C terminal M1S39_04555 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ M1S39_04560 PF06175 tRNA-(MS[2]IO[6]A)-hydroxylase (MiaE) M1S39_04565 PF00106 short chain dehydrogenase M1S39_04595 PF00155 Aminotransferase class I and II M1S39_04605 PF00990 Diguanylate cyclase, GGDEF domain M1S39_04605 PF17151 Periplasmic sensor domain M1S39_04615 PF12344 Ultra-violet resistance protein B M1S39_04615 PF17757 UvrB interaction domain M1S39_04615 PF04851 Type III restriction enzyme, res subunit M1S39_04615 PF00271 Helicase conserved C-terminal domain M1S39_04615 PF02151 UvrB/uvrC motif M1S39_04625 PF00892 EamA-like transporter family M1S39_04630 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain M1S39_04630 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain M1S39_04645 PF01018 GTP1/OBG M1S39_04645 PF01926 50S ribosome-binding GTPase M1S39_04650 PF01472 PUA domain M1S39_04650 PF00696 Amino acid kinase family M1S39_04660 PF07759 Protein of unknown function (DUF1615) M1S39_04665 PF01207 Dihydrouridine synthase (Dus) M1S39_04670 PF03060 Nitronate monooxygenase M1S39_04685 PF02350 UDP-N-acetylglucosamine 2-epimerase M1S39_04715 PF00875 DNA photolyase M1S39_04715 PF03441 FAD binding domain of DNA photolyase M1S39_04720 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase M1S39_04725 PF07992 Pyridine nucleotide-disulphide oxidoreductase M1S39_04730 PF07943 Penicillin-binding protein 5, C-terminal domain M1S39_04730 PF00768 D-alanyl-D-alanine carboxypeptidase M1S39_04740 PF03971 Monomeric isocitrate dehydrogenase M1S39_04745 PF00849 RNA pseudouridylate synthase M1S39_04750 PF00180 Isocitrate/isopropylmalate dehydrogenase M1S39_04770 PF06779 Uncharacterised MFS-type transporter YbfB M1S39_04775 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M1S39_04775 PF03466 LysR substrate binding domain M1S39_04780 PF00375 Sodium:dicarboxylate symporter family M1S39_04785 PF02567 Phenazine biosynthesis-like protein M1S39_04790 PF00675 Insulinase (Peptidase family M16) M1S39_04790 PF05193 Peptidase M16 inactive domain M1S39_04815 PF02581 Thiamine monophosphate synthase M1S39_04820 PF00202 Aminotransferase class-III M1S39_04830 PF00849 RNA pseudouridylate synthase M1S39_04835 PF00271 Helicase conserved C-terminal domain M1S39_04835 PF12137 RNA polymerase recycling family C-terminal M1S39_04835 PF00176 SNF2 family N-terminal domain M1S39_04835 PF18339 RapA N-terminal Tudor like domain 1 M1S39_04835 PF18337 RapA N-terminal Tudor like domain M1S39_04845 PF00440 Bacterial regulatory proteins, tetR family M1S39_04850 PF00970 Oxidoreductase FAD-binding domain M1S39_04850 PF00111 2Fe-2S iron-sulfur cluster binding domain M1S39_04850 PF00175 Oxidoreductase NAD-binding domain M1S39_04865 PF17754 MftR C-terminal domain M1S39_04865 PF00440 Bacterial regulatory proteins, tetR family M1S39_04875 PF00202 Aminotransferase class-III M1S39_04880 PF00282 Pyridoxal-dependent decarboxylase conserved domain M1S39_04885 PF00171 Aldehyde dehydrogenase family M1S39_04890 PF01037 Lrp/AsnC ligand binding domain M1S39_04895 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain M1S39_04895 PF00205 Thiamine pyrophosphate enzyme, central domain M1S39_04895 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain M1S39_04900 PF00324 Amino acid permease M1S39_04905 PF12849 PBP superfamily domain M1S39_04910 PF00528 Binding-protein-dependent transport system inner membrane component M1S39_04915 PF00528 Binding-protein-dependent transport system inner membrane component M1S39_04920 PF00005 ABC transporter M1S39_04925 PF01343 Peptidase family S49 M1S39_04925 PF08496 Peptidase family S49 N-terminal M1S39_04940 PF08328 Adenylosuccinate lyase C-terminal M1S39_04940 PF00206 Lyase M1S39_04945 PF04356 Protein of unknown function (DUF489) M1S39_04955 PF00293 NUDIX domain M1S39_04955 PF13344 Haloacid dehalogenase-like hydrolase M1S39_04960 PF00132 Bacterial transferase hexapeptide (six repeats) M1S39_04965 PF00768 D-alanyl-D-alanine carboxypeptidase M1S39_04965 PF07943 Penicillin-binding protein 5, C-terminal domain M1S39_04980 PF01975 Survival protein SurE M1S39_04985 PF01476 LysM domain M1S39_04985 PF01551 Peptidase family M23 M1S39_04990 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M1S39_04990 PF03466 LysR substrate binding domain M1S39_04995 PF13654 AAA domain M1S39_04995 PF05362 Lon protease (S16) C-terminal proteolytic domain M1S39_05000 PF07690 Major Facilitator Superfamily M1S39_05005 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily M1S39_05010 PF13593 SBF-like CPA transporter family (DUF4137) M1S39_05015 PF01197 Ribosomal protein L31 M1S39_05030 PF04055 Radical SAM superfamily M1S39_05035 PF01132 Elongation factor P (EF-P) OB domain M1S39_05035 PF08207 Elongation factor P (EF-P) KOW-like domain M1S39_05035 PF09285 Elongation factor P, C-terminal M1S39_05040 PF13722 5TM C-terminal transporter carbon starvation CstA M1S39_05040 PF02554 Carbon starvation protein CstA M1S39_05045 PF04328 Selenoprotein, putative M1S39_05080 PF13556 PucR C-terminal helix-turn-helix domain M1S39_05080 PF06018 CodY GAF-like domain M1S39_05080 PF17853 GGDEF-like domain M1S39_05095 PF00171 Aldehyde dehydrogenase family M1S39_05100 PF00324 Amino acid permease M1S39_05105 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M1S39_05105 PF03466 LysR substrate binding domain M1S39_05110 PF02028 BCCT, betaine/carnitine/choline family transporter M1S39_05115 PF02028 BCCT, betaine/carnitine/choline family transporter M1S39_05120 PF00355 Rieske [2Fe-2S] domain M1S39_05120 PF00848 Ring hydroxylating alpha subunit (catalytic domain) M1S39_05125 PF00171 Aldehyde dehydrogenase family M1S39_05135 PF07992 Pyridine nucleotide-disulphide oxidoreductase M1S39_05135 PF18113 Rubredoxin binding C-terminal domain M1S39_05140 PF05430 S-adenosyl-L-methionine-dependent methyltransferase M1S39_05140 PF01266 FAD dependent oxidoreductase M1S39_05160 PF00892 EamA-like transporter family M1S39_05170 PF02604 Antitoxin Phd_YefM, type II toxin-antitoxin system M1S39_05175 PF00083 Sugar (and other) transporter M1S39_05180 PF13378 Enolase C-terminal domain-like M1S39_05180 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain M1S39_05185 PF08240 Alcohol dehydrogenase GroES-like domain M1S39_05185 PF00698 Acyl transferase domain M1S39_05185 PF08990 Erythronolide synthase docking M1S39_05185 PF09277 Erythronolide synthase, docking M1S39_05185 PF16197 Ketoacyl-synthetase C-terminal extension M1S39_05185 PF00109 Beta-ketoacyl synthase, N-terminal domain M1S39_05185 PF02801 Beta-ketoacyl synthase, C-terminal domain M1S39_05185 PF08659 KR domain M1S39_05185 PF00550 Phosphopantetheine attachment site M1S39_05185 PF14765 Polyketide synthase dehydratase M1S39_05190 PF00440 Bacterial regulatory proteins, tetR family M1S39_05210 PF02678 Pirin M1S39_05210 PF17954 Quercetinase C-terminal cupin domain M1S39_05220 PF13309 HTH domain M1S39_05220 PF08348 YheO-like PAS domain M1S39_05230 PF00668 Condensation domain M1S39_05230 PF13193 AMP-binding enzyme C-terminal domain M1S39_05230 PF00501 AMP-binding enzyme M1S39_05230 PF00550 Phosphopantetheine attachment site M1S39_05235 PF00668 Condensation domain M1S39_05235 PF13193 AMP-binding enzyme C-terminal domain M1S39_05235 PF00975 Thioesterase domain M1S39_05235 PF00550 Phosphopantetheine attachment site M1S39_05235 PF00501 AMP-binding enzyme M1S39_05240 PF01032 FecCD transport family M1S39_05245 PF01032 FecCD transport family M1S39_05250 PF00005 ABC transporter M1S39_05255 PF01497 Periplasmic binding protein M1S39_05260 PF00593 TonB dependent receptor M1S39_05260 PF07715 TonB-dependent Receptor Plug Domain M1S39_05265 PF13434 L-lysine 6-monooxygenase (NADPH-requiring) M1S39_05270 PF00501 AMP-binding enzyme M1S39_05270 PF00668 Condensation domain M1S39_05270 PF00550 Phosphopantetheine attachment site M1S39_05275 PF00501 AMP-binding enzyme M1S39_05275 PF13193 AMP-binding enzyme C-terminal domain M1S39_05280 PF00857 Isochorismatase family M1S39_05280 PF00550 Phosphopantetheine attachment site M1S39_05285 PF00282 Pyridoxal-dependent decarboxylase conserved domain M1S39_05295 PF00005 ABC transporter M1S39_05300 PF00005 ABC transporter M1S39_05305 PF00975 Thioesterase domain M1S39_05315 PF00425 chorismate binding enzyme M1S39_05325 PF01208 Uroporphyrinogen decarboxylase (URO-D) M1S39_05330 PF05675 Protein of unknown function (DUF817) M1S39_05345 PF00144 Beta-lactamase M1S39_05355 PF01227 GTP cyclohydrolase I M1S39_05360 PF01799 [2Fe-2S] binding domain M1S39_05360 PF00111 2Fe-2S iron-sulfur cluster binding domain M1S39_05365 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase M1S39_05365 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain M1S39_05380 PF00218 Indole-3-glycerol phosphate synthase M1S39_05385 PF00591 Glycosyl transferase family, a/b domain M1S39_05385 PF02885 Glycosyl transferase family, helical bundle domain M1S39_05390 PF07715 TonB-dependent Receptor Plug Domain M1S39_05390 PF00593 TonB dependent receptor M1S39_05395 PF11838 ERAP1-like C-terminal domain M1S39_05395 PF01433 Peptidase family M1 domain M1S39_05400 PF00117 Glutamine amidotransferase class-I M1S39_05410 PF00854 POT family M1S39_05415 PF00120 Glutamine synthetase, catalytic domain M1S39_05415 PF03951 Glutamine synthetase, beta-Grasp domain M1S39_05420 PF04345 Chorismate lyase M1S39_05425 PF01040 UbiA prenyltransferase family M1S39_05460 PF02777 Iron/manganese superoxide dismutases, C-terminal domain M1S39_05460 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain M1S39_05465 PF01784 NIF3 (NGG1p interacting factor 3) M1S39_05470 PF13180 PDZ domain M1S39_05475 PF01743 Poly A polymerase head domain M1S39_05475 PF12627 Probable RNA and SrmB- binding site of polymerase A M1S39_05480 PF01515 Phosphate acetyl/butaryl transferase M1S39_05480 PF00390 Malic enzyme, N-terminal domain M1S39_05480 PF03949 Malic enzyme, NAD binding domain M1S39_05485 PF00563 EAL domain M1S39_05485 PF00990 Diguanylate cyclase, GGDEF domain M1S39_05485 PF03707 Bacterial signalling protein N terminal repeat M1S39_05490 PF04452 RNA methyltransferase M1S39_05495 PF02219 Methylenetetrahydrofolate reductase M1S39_05500 PF05221 S-adenosyl-L-homocysteine hydrolase M1S39_05500 PF00670 S-adenosyl-L-homocysteine hydrolase, NAD binding domain M1S39_05515 PF00441 Acyl-CoA dehydrogenase, C-terminal domain M1S39_05515 PF02771 Acyl-CoA dehydrogenase, N-terminal domain M1S39_05515 PF09317 Domain of unknown function (DUF1974) M1S39_05520 PF04055 Radical SAM superfamily M1S39_05525 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain M1S39_05525 PF07992 Pyridine nucleotide-disulphide oxidoreductase M1S39_05535 PF07690 Major Facilitator Superfamily M1S39_05545 PF00557 Metallopeptidase family M24 M1S39_05555 PF00889 Elongation factor TS M1S39_05565 PF12833 Helix-turn-helix domain M1S39_05585 PF05036 Sporulation related domain M1S39_05585 PF03330 Lytic transglycolase M1S39_05590 PF13406 Transglycosylase SLT domain M1S39_05595 PF01098 Cell cycle protein M1S39_05605 PF14819 Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term M1S39_05605 PF14489 QueF-like protein M1S39_05610 PF01061 ABC-2 type transporter M1S39_05615 PF00005 ABC transporter M1S39_05645 PF00464 Serine hydroxymethyltransferase M1S39_05650 PF02321 Outer membrane efflux protein M1S39_05655 PF00873 AcrB/AcrD/AcrF family M1S39_05660 PF13533 Biotin-lipoyl like M1S39_05665 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M1S39_05665 PF03466 LysR substrate binding domain M1S39_05670 PF00497 Bacterial extracellular solute-binding proteins, family 3 M1S39_05675 PF00528 Binding-protein-dependent transport system inner membrane component M1S39_05680 PF00528 Binding-protein-dependent transport system inner membrane component M1S39_05685 PF00005 ABC transporter M1S39_05690 PF00893 Small Multidrug Resistance protein M1S39_05695 PF00037 4Fe-4S binding domain M1S39_05700 PF01136 Peptidase family U32 M1S39_05700 PF16325 Peptidase family U32 C-terminal domain M1S39_05705 PF00392 Bacterial regulatory proteins, gntR family M1S39_05705 PF00155 Aminotransferase class I and II M1S39_05710 PF02567 Phenazine biosynthesis-like protein M1S39_05715 PF00970 Oxidoreductase FAD-binding domain M1S39_05715 PF00175 Oxidoreductase NAD-binding domain M1S39_05720 PF18389 TrmO C-terminal domain M1S39_05720 PF01980 tRNA-methyltransferase O M1S39_05730 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain M1S39_05730 PF00437 Type II/IV secretion system protein M1S39_05740 PF00072 Response regulator receiver domain M1S39_05740 PF00486 Transcriptional regulatory protein, C terminal M1S39_05745 PF08521 Two-component sensor kinase N-terminal M1S39_05745 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M1S39_05745 PF00512 His Kinase A (phospho-acceptor) domain M1S39_05755 PF00293 NUDIX domain M1S39_05765 PF00912 Transglycosylase M1S39_05765 PF00905 Penicillin binding protein transpeptidase domain M1S39_05765 PF14814 Bifunctional transglycosylase second domain M1S39_05770 PF01513 ATP-NAD kinase M1S39_05775 PF07023 Protein of unknown function (DUF1315) M1S39_05780 PF02885 Glycosyl transferase family, helical bundle domain M1S39_05780 PF00591 Glycosyl transferase family, a/b domain M1S39_05785 PF00375 Sodium:dicarboxylate symporter family M1S39_05790 PF00441 Acyl-CoA dehydrogenase, C-terminal domain M1S39_05790 PF02770 Acyl-CoA dehydrogenase, middle domain M1S39_05790 PF02771 Acyl-CoA dehydrogenase, N-terminal domain M1S39_05795 PF00756 Putative esterase M1S39_05800 PF01817 Chorismate mutase type II M1S39_05800 PF00800 Prephenate dehydratase M1S39_05800 PF01842 ACT domain M1S39_05805 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) M1S39_05815 PF07687 Peptidase dimerisation domain M1S39_05815 PF01546 Peptidase family M20/M25/M40 M1S39_05820 PF12706 Beta-lactamase superfamily domain M1S39_05830 PF03883 Peroxide stress protein YaaA M1S39_05840 PF05690 Thiazole biosynthesis protein ThiG M1S39_05850 PF04241 Protein of unknown function (DUF423) M1S39_05855 PF04542 Sigma-70 region 2 M1S39_05855 PF00140 Sigma-70 factor, region 1.2 M1S39_05855 PF04545 Sigma-70, region 4 M1S39_05870 PF00313 'Cold-shock' DNA-binding domain M1S39_05875 PF00270 DEAD/DEAH box helicase M1S39_05875 PF00271 Helicase conserved C-terminal domain M1S39_05885 PF00881 Nitroreductase family M1S39_05890 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus M1S39_05890 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus M1S39_05900 PF00589 Phage integrase family M1S39_05995 PF01555 DNA methylase M1S39_06225 PF01180 Dihydroorotate dehydrogenase M1S39_06230 PF02674 Colicin V production protein M1S39_06235 PF00156 Phosphoribosyl transferase domain M1S39_06250 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain M1S39_06250 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain M1S39_06255 PF01435 Peptidase family M48 M1S39_06260 PF09424 Yqey-like protein M1S39_06265 PF01165 Ribosomal protein S21 M1S39_06270 PF00814 Glycoprotease family M1S39_06290 PF00069 Protein kinase domain M1S39_06315 PF03466 LysR substrate binding domain M1S39_06315 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M1S39_06320 PF00202 Aminotransferase class-III M1S39_06325 PF00171 Aldehyde dehydrogenase family M1S39_06330 PF00324 Amino acid permease M1S39_06360 PF04076 Bacterial OB fold (BOF) protein M1S39_06385 PF00561 alpha/beta hydrolase fold M1S39_06390 PF03616 Sodium/glutamate symporter M1S39_06405 PF13610 DDE domain M1S39_06420 PF00375 Sodium:dicarboxylate symporter family M1S39_06430 PF16123 Hydroxyacylglutathione hydrolase C-terminus M1S39_06430 PF00753 Metallo-beta-lactamase superfamily M1S39_06435 PF00528 Binding-protein-dependent transport system inner membrane component M1S39_06440 PF00005 ABC transporter M1S39_06440 PF09383 NIL domain M1S39_06445 PF03180 NLPA lipoprotein M1S39_06450 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain M1S39_06450 PF02844 Phosphoribosylglycinamide synthetase, N domain M1S39_06450 PF02843 Phosphoribosylglycinamide synthetase, C domain M1S39_06455 PF01808 AICARFT/IMPCHase bienzyme M1S39_06455 PF02142 MGS-like domain M1S39_06460 PF02954 Bacterial regulatory protein, Fis family M1S39_06480 PF01134 Glucose inhibited division protein A M1S39_06480 PF13932 GidA associated domain M1S39_06490 PF14403 Circularly permuted ATP-grasp type 2 M1S39_06500 PF08379 Bacterial transglutaminase-like N-terminal region M1S39_06500 PF01841 Transglutaminase-like superfamily M1S39_06510 PF01168 Alanine racemase, N-terminal domain M1S39_06510 PF00842 Alanine racemase, C-terminal domain M1S39_06515 PF03796 DnaB-like helicase C terminal domain M1S39_06515 PF00772 DnaB-like helicase N terminal domain M1S39_06520 PF03948 Ribosomal protein L9, C-terminal domain M1S39_06520 PF01281 Ribosomal protein L9, N-terminal domain M1S39_06525 PF01084 Ribosomal protein S18 M1S39_06530 PF01250 Ribosomal protein S6 M1S39_06535 PF01040 UbiA prenyltransferase family M1S39_06540 PF03626 Prokaryotic Cytochrome C oxidase subunit IV M1S39_06545 PF00510 Cytochrome c oxidase subunit III M1S39_06550 PF00115 Cytochrome C and Quinol oxidase polypeptide I M1S39_06555 PF00116 Cytochrome C oxidase subunit II, periplasmic domain M1S39_06555 PF06481 COX Aromatic Rich Motif M1S39_06565 PF00391 PEP-utilising enzyme, mobile domain M1S39_06565 PF02896 PEP-utilising enzyme, TIM barrel domain M1S39_06565 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain M1S39_06570 PF03618 Kinase/pyrophosphorylase M1S39_06580 PF14883 Hypothetical glycosyl hydrolase family 13 M1S39_06580 PF01522 Polysaccharide deacetylase M1S39_06585 PF00535 Glycosyl transferase family 2 M1S39_06590 PF13994 PgaD-like protein M1S39_06600 PF00296 Luciferase-like monooxygenase M1S39_06615 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M1S39_06615 PF03466 LysR substrate binding domain M1S39_06625 PF00472 RF-1 domain M1S39_06625 PF03462 PCRF domain M1S39_06635 PF00528 Binding-protein-dependent transport system inner membrane component M1S39_06640 PF09084 NMT1/THI5 like M1S39_06645 PF12833 Helix-turn-helix domain M1S39_06650 PF00106 short chain dehydrogenase M1S39_06655 PF00441 Acyl-CoA dehydrogenase, C-terminal domain M1S39_06655 PF02770 Acyl-CoA dehydrogenase, middle domain M1S39_06655 PF02771 Acyl-CoA dehydrogenase, N-terminal domain M1S39_06660 PF13193 AMP-binding enzyme C-terminal domain M1S39_06660 PF00501 AMP-binding enzyme M1S39_06665 PF01613 Flavin reductase like domain M1S39_06670 PF00899 ThiF family M1S39_06675 PF03109 ABC1 family M1S39_06690 PF03814 Potassium-transporting ATPase A subunit M1S39_06700 PF02669 K+-transporting ATPase, c chain M1S39_06705 PF13493 Domain of unknown function (DUF4118) M1S39_06705 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M1S39_06705 PF00512 His Kinase A (phospho-acceptor) domain M1S39_06705 PF02702 Osmosensitive K+ channel His kinase sensor domain M1S39_06710 PF00072 Response regulator receiver domain M1S39_06710 PF00486 Transcriptional regulatory protein, C terminal M1S39_06715 PF00120 Glutamine synthetase, catalytic domain M1S39_06725 PF03232 Ubiquinone biosynthesis protein COQ7 M1S39_06730 PF07690 Major Facilitator Superfamily M1S39_06735 PF01103 Surface antigen M1S39_06735 PF07244 Surface antigen variable number repeat M1S39_06735 PF17243 POTRA domain TamA domain 1 M1S39_06750 PF00330 Aconitase family (aconitate hydratase) M1S39_06750 PF06434 Aconitate hydratase 2 N-terminus M1S39_06750 PF11791 Aconitate B N-terminal domain M1S39_06760 PF00027 Cyclic nucleotide-binding domain M1S39_06760 PF00520 Ion transport protein M1S39_06765 PF07690 Major Facilitator Superfamily M1S39_06780 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M1S39_06780 PF03466 LysR substrate binding domain M1S39_06785 PF04284 Protein of unknown function (DUF441) M1S39_06795 PF00849 RNA pseudouridylate synthase M1S39_06795 PF01479 S4 domain M1S39_06810 PF00849 RNA pseudouridylate synthase M1S39_06810 PF01479 S4 domain M1S39_06815 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE M1S39_06820 PF01119 DNA mismatch repair protein, C-terminal domain M1S39_06820 PF08676 MutL C terminal dimerisation domain M1S39_06830 PF17209 Hfq protein M1S39_06840 PF00881 Nitroreductase family M1S39_06850 PF00149 Calcineurin-like phosphoesterase M1S39_06855 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD M1S39_06860 PF00749 tRNA synthetases class I (E and Q), catalytic domain M1S39_06860 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain M1S39_06865 PF00117 Glutamine amidotransferase class-I M1S39_06865 PF00958 GMP synthase C terminal domain M1S39_06865 PF02540 NAD synthase M1S39_06870 PF05985 Ethanolamine ammonia-lyase light chain (EutC) M1S39_06880 PF13520 Amino acid permease M1S39_06885 PF00171 Aldehyde dehydrogenase family M1S39_06900 PF00465 Iron-containing alcohol dehydrogenase M1S39_06905 PF14493 Helix-turn-helix domain M1S39_06905 PF05970 PIF1-like helicase M1S39_06915 PF06445 GyrI-like small molecule binding domain M1S39_06920 PF02110 Hydroxyethylthiazole kinase family M1S39_06935 PF01433 Peptidase family M1 domain M1S39_06935 PF17432 Domain of unknown function (DUF3458_C) ARM repeats M1S39_06935 PF11940 Domain of unknown function (DUF3458) Ig-like fold M1S39_06945 PF00106 short chain dehydrogenase M1S39_06955 PF01817 Chorismate mutase type II M1S39_06960 PF01037 Lrp/AsnC ligand binding domain M1S39_06975 PF00440 Bacterial regulatory proteins, tetR family M1S39_06980 PF07715 TonB-dependent Receptor Plug Domain M1S39_06980 PF00593 TonB dependent receptor M1S39_06985 PF00924 Mechanosensitive ion channel M1S39_07020 PF00593 TonB dependent receptor M1S39_07020 PF07715 TonB-dependent Receptor Plug Domain M1S39_07040 PF00005 ABC transporter M1S39_07040 PF12848 ABC transporter M1S39_07045 PF00582 Universal stress protein family M1S39_07070 PF00690 Cation transporter/ATPase, N-terminus M1S39_07070 PF00689 Cation transporting ATPase, C-terminus M1S39_07075 PF02308 MgtC family M1S39_07080 PF03594 Benzoate membrane transport protein M1S39_07085 PF01037 Lrp/AsnC ligand binding domain M1S39_07090 PF01810 LysE type translocator M1S39_07095 PF00923 Transaldolase/Fructose-6-phosphate aldolase M1S39_07100 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M1S39_07100 PF03466 LysR substrate binding domain M1S39_07110 PF00108 Thiolase, N-terminal domain M1S39_07110 PF02803 Thiolase, C-terminal domain M1S39_07120 PF01575 MaoC like domain M1S39_07125 PF00144 Beta-lactamase M1S39_07135 PF07690 Major Facilitator Superfamily M1S39_07140 PF12168 DNA polymerase III subunits tau domain IV DnaB-binding M1S39_07140 PF12170 DNA polymerase III tau subunit V interacting with alpha M1S39_07140 PF12169 DNA polymerase III subunits gamma and tau domain III M1S39_07145 PF05506 Domain of unknown function (DUF756) M1S39_07145 PF04185 Phosphoesterase family M1S39_07150 PF03061 Thioesterase superfamily M1S39_07155 PF00465 Iron-containing alcohol dehydrogenase M1S39_07165 PF01451 Low molecular weight phosphotyrosine protein phosphatase M1S39_07170 PF01565 FAD binding domain M1S39_07170 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain M1S39_07185 PF01645 Conserved region in glutamate synthase M1S39_07285 PF01555 DNA methylase M1S39_07560 PF12832 MFS_1 like family M1S39_07570 PF02785 Biotin carboxylase C-terminal domain M1S39_07570 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain M1S39_07570 PF00289 Biotin carboxylase, N-terminal domain M1S39_07575 PF00364 Biotin-requiring enzyme M1S39_07580 PF01220 Dehydroquinase class II M1S39_07585 PF11799 impB/mucB/samB family C-terminal domain M1S39_07585 PF13438 Domain of unknown function (DUF4113) M1S39_07585 PF00817 impB/mucB/samB family M1S39_07595 PF00005 ABC transporter M1S39_07600 PF00072 Response regulator receiver domain M1S39_07600 PF00486 Transcriptional regulatory protein, C terminal M1S39_07610 PF04324 BFD-like [2Fe-2S] binding domain M1S39_07610 PF01077 Nitrite and sulphite reductase 4Fe-4S domain M1S39_07610 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain M1S39_07610 PF07992 Pyridine nucleotide-disulphide oxidoreductase M1S39_07610 PF13806 Rieske-like [2Fe-2S] domain M1S39_07610 PF18267 Rubredoxin NAD+ reductase C-terminal domain M1S39_07615 PF04324 BFD-like [2Fe-2S] binding domain M1S39_07615 PF01077 Nitrite and sulphite reductase 4Fe-4S domain M1S39_07615 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain M1S39_07615 PF07992 Pyridine nucleotide-disulphide oxidoreductase M1S39_07615 PF18267 Rubredoxin NAD+ reductase C-terminal domain M1S39_07620 PF01568 Molydopterin dinucleotide binding domain M1S39_07620 PF04324 BFD-like [2Fe-2S] binding domain M1S39_07620 PF04879 Molybdopterin oxidoreductase Fe4S4 domain M1S39_07620 PF00384 Molybdopterin oxidoreductase M1S39_07625 PF12804 MobA-like NTP transferase domain M1S39_07630 PF04879 Molybdopterin oxidoreductase Fe4S4 domain M1S39_07630 PF00384 Molybdopterin oxidoreductase M1S39_07630 PF01568 Molydopterin dinucleotide binding domain M1S39_07635 PF06463 Molybdenum Cofactor Synthesis C M1S39_07635 PF04055 Radical SAM superfamily M1S39_07645 PF02391 MoaE protein M1S39_07650 PF01967 MoaC family M1S39_07650 PF00994 Probable molybdopterin binding domain M1S39_07655 PF03453 MoeA N-terminal region (domain I and II) M1S39_07655 PF00994 Probable molybdopterin binding domain M1S39_07655 PF03454 MoeA C-terminal region (domain IV) M1S39_07660 PF01638 HxlR-like helix-turn-helix M1S39_07665 PF00155 Aminotransferase class I and II M1S39_07665 PF00392 Bacterial regulatory proteins, gntR family M1S39_07670 PF00892 EamA-like transporter family M1S39_07690 PF02635 DsrE/DsrF-like family M1S39_07695 PF16363 GDP-mannose 4,6 dehydratase M1S39_07700 PF00206 Lyase M1S39_07700 PF10415 Fumarase C C-terminus M1S39_07720 PF01266 FAD dependent oxidoreductase M1S39_07730 PF02542 YgbB family M1S39_07740 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain M1S39_07740 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain M1S39_07760 PF00072 Response regulator receiver domain M1S39_07760 PF00158 Sigma-54 interaction domain M1S39_07760 PF02954 Bacterial regulatory protein, Fis family M1S39_07765 PF00512 His Kinase A (phospho-acceptor) domain M1S39_07765 PF00989 PAS fold M1S39_07765 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M1S39_07770 PF04055 Radical SAM superfamily M1S39_07770 PF18693 TRAM domain M1S39_07770 PF00919 Uncharacterized protein family UPF0004 M1S39_07775 PF00696 Amino acid kinase family M1S39_07780 PF01765 Ribosome recycling factor M1S39_07785 PF01255 Putative undecaprenyl diphosphate synthase M1S39_07795 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain M1S39_07795 PF13288 DXP reductoisomerase C-terminal domain M1S39_07795 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase M1S39_07800 PF02163 Peptidase family M50 M1S39_07800 PF17820 PDZ domain M1S39_07800 PF13180 PDZ domain M1S39_07805 PF07244 Surface antigen variable number repeat M1S39_07805 PF01103 Surface antigen M1S39_07815 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD M1S39_07815 PF00132 Bacterial transferase hexapeptide (six repeats) M1S39_07820 PF07977 FabA-like domain M1S39_07825 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 M1S39_07825 PF00132 Bacterial transferase hexapeptide (six repeats) M1S39_07840 PF02631 RecX family M1S39_07845 PF00154 recA bacterial DNA recombination protein M1S39_07850 PF01479 S4 domain M1S39_07855 PF13419 Haloacid dehalogenase-like hydrolase M1S39_07880 PF01037 Lrp/AsnC ligand binding domain M1S39_07885 PF00266 Aminotransferase class-V M1S39_07890 PF00324 Amino acid permease M1S39_07905 PF05922 Peptidase inhibitor I9 M1S39_07905 PF00082 Subtilase family M1S39_07910 PF00916 Sulfate permease family M1S39_07910 PF01740 STAS domain M1S39_07915 PF02586 SOS response associated peptidase (SRAP) M1S39_07920 PF07995 Glucose / Sorbosone dehydrogenase M1S39_07930 PF00990 Diguanylate cyclase, GGDEF domain M1S39_07930 PF00563 EAL domain M1S39_07930 PF03707 Bacterial signalling protein N terminal repeat M1S39_07950 PF02378 Phosphotransferase system, EIIC M1S39_07950 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit M1S39_07955 PF00294 pfkB family carbohydrate kinase M1S39_07960 PF00381 PTS HPr component phosphorylation site M1S39_07960 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 M1S39_07960 PF05524 PEP-utilising enzyme, N-terminal M1S39_07960 PF00391 PEP-utilising enzyme, mobile domain M1S39_07960 PF02896 PEP-utilising enzyme, TIM barrel domain M1S39_07985 PF05525 Branched-chain amino acid transport protein M1S39_07990 PF00557 Metallopeptidase family M24 M1S39_07995 PF03466 LysR substrate binding domain M1S39_07995 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M1S39_08005 PF00462 Glutaredoxin M1S39_08010 PF00202 Aminotransferase class-III M1S39_08015 PF00571 CBS domain M1S39_08015 PF00478 IMP dehydrogenase / GMP reductase domain M1S39_08040 PF02881 SRP54-type protein, helical bundle domain M1S39_08040 PF00448 SRP54-type protein, GTPase domain M1S39_08050 PF09829 Uncharacterized protein conserved in bacteria (DUF2057) M1S39_08065 PF08173 Membrane bound YbgT-like protein M1S39_08070 PF02322 Cytochrome bd terminal oxidase subunit II M1S39_08085 PF07290 Protein of unknown function (DUF1449) M1S39_08095 PF00294 pfkB family carbohydrate kinase M1S39_08100 PF00593 TonB dependent receptor M1S39_08100 PF07715 TonB-dependent Receptor Plug Domain M1S39_08105 PF00675 Insulinase (Peptidase family M16) M1S39_08105 PF08367 Peptidase M16C associated M1S39_08105 PF05193 Peptidase M16 inactive domain M1S39_08110 PF02253 Phospholipase A1 M1S39_08115 PF02386 Cation transport protein M1S39_08120 PF02080 TrkA-C domain M1S39_08120 PF02254 TrkA-N domain M1S39_08125 PF00585 C-terminal regulatory domain of Threonine dehydratase M1S39_08125 PF00291 Pyridoxal-phosphate dependent enzyme M1S39_08130 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) M1S39_08145 PF02774 Semialdehyde dehydrogenase, dimerisation domain M1S39_08145 PF01118 Semialdehyde dehydrogenase, NAD binding domain M1S39_08155 PF02617 ATP-dependent Clp protease adaptor protein ClpS M1S39_08160 PF10431 C-terminal, D2-small domain, of ClpB protein M1S39_08160 PF00004 ATPase family associated with various cellular activities (AAA) M1S39_08160 PF07724 AAA domain (Cdc48 subfamily) M1S39_08160 PF17871 AAA lid domain M1S39_08160 PF02861 Clp amino terminal domain, pathogenicity island component M1S39_08165 PF02694 Uncharacterised BCR, YnfA/UPF0060 family M1S39_08170 PF00793 DAHP synthetase I family M1S39_08185 PF00724 NADH:flavin oxidoreductase / NADH oxidase family M1S39_08185 PF07992 Pyridine nucleotide-disulphide oxidoreductase M1S39_08215 PF00117 Glutamine amidotransferase class-I M1S39_08215 PF06418 CTP synthase N-terminus M1S39_08220 PF00793 DAHP synthetase I family M1S39_08225 PF00113 Enolase, C-terminal TIM barrel domain M1S39_08225 PF03952 Enolase, N-terminal domain M1S39_08230 PF04239 Protein of unknown function (DUF421) M1S39_08235 PF04977 Septum formation initiator M1S39_08240 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase M1S39_08245 PF01144 Coenzyme A transferase M1S39_08250 PF01144 Coenzyme A transferase M1S39_08255 PF00108 Thiolase, N-terminal domain M1S39_08255 PF02803 Thiolase, C-terminal domain M1S39_08260 PF00206 Lyase M1S39_08260 PF10397 Adenylosuccinate lyase C-terminus M1S39_08265 PF00561 alpha/beta hydrolase fold M1S39_08270 PF07690 Major Facilitator Superfamily M1S39_08275 PF02627 Carboxymuconolactone decarboxylase family M1S39_08280 PF12391 Protocatechuate 3,4-dioxygenase beta subunit N terminal M1S39_08280 PF00775 Dioxygenase M1S39_08285 PF00775 Dioxygenase M1S39_08290 PF01487 Type I 3-dehydroquinase M1S39_08295 PF05048 Periplasmic copper-binding protein (NosD) M1S39_08300 PF04966 Carbohydrate-selective porin, OprB family M1S39_08305 PF13360 PQQ-like domain M1S39_08305 PF01011 PQQ enzyme repeat M1S39_08315 PF04143 Sulphur transport M1S39_08325 PF00753 Metallo-beta-lactamase superfamily M1S39_08330 PF09339 IclR helix-turn-helix domain M1S39_08330 PF01614 Bacterial transcriptional regulator M1S39_08335 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M1S39_08335 PF03466 LysR substrate binding domain M1S39_08340 PF02771 Acyl-CoA dehydrogenase, N-terminal domain M1S39_08340 PF00441 Acyl-CoA dehydrogenase, C-terminal domain M1S39_08340 PF02770 Acyl-CoA dehydrogenase, middle domain M1S39_08355 PF00106 short chain dehydrogenase M1S39_08365 PF07690 Major Facilitator Superfamily M1S39_08375 PF01425 Amidase M1S39_08380 PF08028 Acyl-CoA dehydrogenase, C-terminal domain M1S39_08395 PF00848 Ring hydroxylating alpha subunit (catalytic domain) M1S39_08395 PF00355 Rieske [2Fe-2S] domain M1S39_08410 PF00175 Oxidoreductase NAD-binding domain M1S39_08410 PF00111 2Fe-2S iron-sulfur cluster binding domain M1S39_08415 PF01613 Flavin reductase like domain M1S39_08420 PF12833 Helix-turn-helix domain M1S39_08420 PF02311 AraC-like ligand binding domain M1S39_08425 PF02728 Copper amine oxidase, N3 domain M1S39_08425 PF02727 Copper amine oxidase, N2 domain M1S39_08425 PF07833 Copper amine oxidase N-terminal domain M1S39_08425 PF01179 Copper amine oxidase, enzyme domain M1S39_08435 PF00171 Aldehyde dehydrogenase family M1S39_08440 PF01804 Penicillin amidase M1S39_08445 PF12146 Serine aminopeptidase, S33 M1S39_08450 PF02803 Thiolase, C-terminal domain M1S39_08450 PF00108 Thiolase, N-terminal domain M1S39_08455 PF01144 Coenzyme A transferase M1S39_08460 PF01144 Coenzyme A transferase M1S39_08470 PF04444 Catechol dioxygenase N terminus M1S39_08470 PF00775 Dioxygenase M1S39_08475 PF02426 Muconolactone delta-isomerase M1S39_08480 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain M1S39_08480 PF13378 Enolase C-terminal domain-like M1S39_08485 PF03466 LysR substrate binding domain M1S39_08485 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M1S39_08495 PF00392 Bacterial regulatory proteins, gntR family M1S39_08495 PF07729 FCD domain M1S39_08500 PF00920 Dehydratase family M1S39_08505 PF07690 Major Facilitator Superfamily M1S39_08515 PF00171 Aldehyde dehydrogenase family M1S39_08535 PF00441 Acyl-CoA dehydrogenase, C-terminal domain M1S39_08535 PF02770 Acyl-CoA dehydrogenase, middle domain M1S39_08535 PF02771 Acyl-CoA dehydrogenase, N-terminal domain M1S39_08545 PF06506 Propionate catabolism activator M1S39_08545 PF00158 Sigma-54 interaction domain M1S39_08545 PF02954 Bacterial regulatory protein, Fis family M1S39_08550 PF13193 AMP-binding enzyme C-terminal domain M1S39_08550 PF00501 AMP-binding enzyme M1S39_08555 PF04341 Protein of unknown function, DUF485 M1S39_08560 PF00474 Sodium:solute symporter family M1S39_08565 PF08240 Alcohol dehydrogenase GroES-like domain M1S39_08565 PF00107 Zinc-binding dehydrogenase M1S39_08570 PF00171 Aldehyde dehydrogenase family M1S39_08580 PF00561 alpha/beta hydrolase fold M1S39_08585 PF06628 Catalase-related immune-responsive M1S39_08585 PF00199 Catalase M1S39_08600 PF07859 alpha/beta hydrolase fold M1S39_08605 PF01047 MarR family M1S39_08610 PF00724 NADH:flavin oxidoreductase / NADH oxidase family M1S39_08610 PF07992 Pyridine nucleotide-disulphide oxidoreductase M1S39_08615 PF00106 short chain dehydrogenase M1S39_08620 PF01872 RibD C-terminal domain M1S39_08625 PF00376 MerR family regulatory protein M1S39_08625 PF09278 MerR, DNA binding M1S39_08635 PF07992 Pyridine nucleotide-disulphide oxidoreductase M1S39_08645 PF12706 Beta-lactamase superfamily domain M1S39_08650 PF00440 Bacterial regulatory proteins, tetR family M1S39_08650 PF08359 YsiA-like protein, C-terminal region M1S39_08660 PF00857 Isochorismatase family M1S39_08665 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M1S39_08665 PF03466 LysR substrate binding domain M1S39_08670 PF07995 Glucose / Sorbosone dehydrogenase M1S39_08675 PF00999 Sodium/hydrogen exchanger family M1S39_08675 PF02254 TrkA-N domain M1S39_08685 PF07687 Peptidase dimerisation domain M1S39_08685 PF01546 Peptidase family M20/M25/M40 M1S39_08695 PF08479 POTRA domain, ShlB-type M1S39_08695 PF17287 POTRA domain M1S39_08695 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB M1S39_08700 PF13018 Extended Signal Peptide of Type V secretion system M1S39_08700 PF13332 Hemagglutinin repeat M1S39_08700 PF05860 haemagglutination activity domain M1S39_08700 PF04829 Pre-toxin domain with VENN motif M1S39_08715 PF07690 Major Facilitator Superfamily M1S39_08720 PF04909 Amidohydrolase M1S39_08730 PF00392 Bacterial regulatory proteins, gntR family M1S39_08730 PF07702 UTRA domain M1S39_08735 PF08450 SMP-30/Gluconolactonase/LRE-like region M1S39_08745 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M1S39_08745 PF03466 LysR substrate binding domain M1S39_08765 PF07690 Major Facilitator Superfamily M1S39_08770 PF01842 ACT domain M1S39_08770 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain M1S39_08770 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain M1S39_08775 PF03737 Aldolase/RraA M1S39_08805 PF00529 HlyD membrane-fusion protein of T1SS M1S39_08805 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion M1S39_08820 PF00171 Aldehyde dehydrogenase family M1S39_08825 PF00171 Aldehyde dehydrogenase family M1S39_08830 PF00920 Dehydratase family M1S39_08840 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M1S39_08840 PF03466 LysR substrate binding domain M1S39_08845 PF01370 NAD dependent epimerase/dehydratase family M1S39_08850 PF07690 Major Facilitator Superfamily M1S39_08855 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase M1S39_08855 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase M1S39_08860 PF12833 Helix-turn-helix domain M1S39_08860 PF06719 AraC-type transcriptional regulator N-terminus M1S39_08875 PF08240 Alcohol dehydrogenase GroES-like domain M1S39_08875 PF00107 Zinc-binding dehydrogenase M1S39_08885 PF01032 FecCD transport family M1S39_08890 PF00005 ABC transporter M1S39_08910 PF14572 Phosphoribosyl synthetase-associated domain M1S39_08910 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase M1S39_08915 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family M1S39_08990 PF00196 Bacterial regulatory proteins, luxR family M1S39_08995 PF01425 Amidase M1S39_09000 PF13533 Biotin-lipoyl like M1S39_09005 PF07690 Major Facilitator Superfamily M1S39_09030 PF01975 Survival protein SurE M1S39_09040 PF02824 TGS domain M1S39_09040 PF13291 ACT domain M1S39_09040 PF04607 Region found in RelA / SpoT proteins M1S39_09090 PF12146 Serine aminopeptidase, S33 M1S39_09095 PF12833 Helix-turn-helix domain M1S39_09095 PF02311 AraC-like ligand binding domain M1S39_09105 PF16527 Two-component sensor protein CpxA, periplasmic domain M1S39_09105 PF00672 HAMP domain M1S39_09105 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M1S39_09105 PF00512 His Kinase A (phospho-acceptor) domain M1S39_09125 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion M1S39_09125 PF00529 HlyD membrane-fusion protein of T1SS M1S39_09130 PF00873 AcrB/AcrD/AcrF family M1S39_09135 PF02321 Outer membrane efflux protein M1S39_09140 PF12146 Serine aminopeptidase, S33 M1S39_09145 PF00743 Flavin-binding monooxygenase-like M1S39_09150 PF01593 Flavin containing amine oxidoreductase M1S39_09165 PF01266 FAD dependent oxidoreductase M1S39_09185 PF16970 Type-1 fimbrial protein, A M1S39_09195 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain M1S39_09195 PF02753 Pili assembly chaperone PapD, C-terminal domain M1S39_09200 PF13953 PapC C-terminal domain M1S39_09200 PF13954 PapC N-terminal domain M1S39_09200 PF00577 Outer membrane usher protein M1S39_09205 PF00419 Fimbrial protein M1S39_09215 PF08240 Alcohol dehydrogenase GroES-like domain M1S39_09215 PF00107 Zinc-binding dehydrogenase M1S39_09225 PF00199 Catalase M1S39_09240 PF13091 PLD-like domain M1S39_09255 PF01244 Membrane dipeptidase (Peptidase family M19) M1S39_09260 PF04055 Radical SAM superfamily M1S39_09260 PF13186 Iron-sulfur cluster-binding domain M1S39_09265 PF05402 Coenzyme PQQ synthesis protein D (PqqD) M1S39_09270 PF03070 TENA/THI-4/PQQC family M1S39_09275 PF12706 Beta-lactamase superfamily domain M1S39_09280 PF08042 PqqA family M1S39_09285 PF02503 Polyphosphate kinase middle domain M1S39_09285 PF13089 Polyphosphate kinase N-terminal domain M1S39_09285 PF17941 Polyphosphate kinase C-terminal domain 1 M1S39_09285 PF13090 Polyphosphate kinase C-terminal domain 2 M1S39_09290 PF00149 Calcineurin-like phosphoesterase M1S39_09300 PF00857 Isochorismatase family M1S39_09300 PF00550 Phosphopantetheine attachment site M1S39_09305 PF00106 short chain dehydrogenase M1S39_09310 PF03459 TOBE domain M1S39_09310 PF00005 ABC transporter M1S39_09315 PF00528 Binding-protein-dependent transport system inner membrane component M1S39_09325 PF03459 TOBE domain M1S39_09325 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M1S39_09330 PF00848 Ring hydroxylating alpha subunit (catalytic domain) M1S39_09330 PF00355 Rieske [2Fe-2S] domain M1S39_09335 PF00866 Ring hydroxylating beta subunit M1S39_09340 PF00111 2Fe-2S iron-sulfur cluster binding domain M1S39_09340 PF00175 Oxidoreductase NAD-binding domain M1S39_09340 PF00970 Oxidoreductase FAD-binding domain M1S39_09345 PF12833 Helix-turn-helix domain M1S39_09345 PF14525 AraC-binding-like domain M1S39_09355 PF01613 Flavin reductase like domain M1S39_09370 PF01738 Dienelactone hydrolase family M1S39_09375 PF07690 Major Facilitator Superfamily M1S39_09380 PF06719 AraC-type transcriptional regulator N-terminus M1S39_09380 PF12833 Helix-turn-helix domain M1S39_09405 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M1S39_09405 PF03466 LysR substrate binding domain M1S39_09410 PF01144 Coenzyme A transferase M1S39_09415 PF01144 Coenzyme A transferase M1S39_09420 PF02667 Short chain fatty acid transporter M1S39_09425 PF00108 Thiolase, N-terminal domain M1S39_09425 PF02803 Thiolase, C-terminal domain M1S39_09430 PF03466 LysR substrate binding domain M1S39_09430 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M1S39_09435 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M1S39_09435 PF03466 LysR substrate binding domain M1S39_09450 PF00206 Lyase M1S39_09450 PF10415 Fumarase C C-terminus M1S39_09455 PF07715 TonB-dependent Receptor Plug Domain M1S39_09455 PF00593 TonB dependent receptor M1S39_09460 PF00083 Sugar (and other) transporter M1S39_09475 PF00005 ABC transporter M1S39_09480 PF00528 Binding-protein-dependent transport system inner membrane component M1S39_09485 PF04069 Substrate binding domain of ABC-type glycine betaine transport system M1S39_09500 PF00392 Bacterial regulatory proteins, gntR family M1S39_09500 PF07702 UTRA domain M1S39_09510 PF02525 Flavodoxin-like fold M1S39_09515 PF01638 HxlR-like helix-turn-helix M1S39_09520 PF12833 Helix-turn-helix domain M1S39_09520 PF06445 GyrI-like small molecule binding domain M1S39_09535 PF01925 Sulfite exporter TauE/SafE M1S39_09550 PF00753 Metallo-beta-lactamase superfamily M1S39_09550 PF04273 Putative phosphatase (DUF442) M1S39_09555 PF00158 Sigma-54 interaction domain M1S39_09555 PF00072 Response regulator receiver domain M1S39_09555 PF02954 Bacterial regulatory protein, Fis family M1S39_09560 PF01062 Bestrophin, RFP-TM, chloride channel M1S39_09565 PF08240 Alcohol dehydrogenase GroES-like domain M1S39_09565 PF00107 Zinc-binding dehydrogenase M1S39_09570 PF00106 short chain dehydrogenase M1S39_09575 PF07992 Pyridine nucleotide-disulphide oxidoreductase M1S39_09575 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain M1S39_09580 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) M1S39_09580 PF00364 Biotin-requiring enzyme M1S39_09580 PF02817 e3 binding domain M1S39_09585 PF02779 Transketolase, pyrimidine binding domain M1S39_09585 PF02780 Transketolase, C-terminal domain M1S39_09590 PF00676 Dehydrogenase E1 component M1S39_09595 PF04055 Radical SAM superfamily M1S39_09610 PF08448 PAS fold M1S39_09610 PF00990 Diguanylate cyclase, GGDEF domain M1S39_09615 PF01264 Chorismate synthase M1S39_09620 PF05175 Methyltransferase small domain M1S39_09625 PF00291 Pyridoxal-phosphate dependent enzyme M1S39_09635 PF00004 ATPase family associated with various cellular activities (AAA) M1S39_09635 PF17862 AAA+ lid domain M1S39_09635 PF01434 Peptidase family M41 M1S39_09645 PF05166 YcgL domain M1S39_09665 PF01612 3'-5' exonuclease M1S39_09665 PF00570 HRDC domain M1S39_09670 PF02132 RecR protein M1S39_09670 PF13662 Toprim domain M1S39_09675 PF02575 YbaB/EbfC DNA-binding family M1S39_09685 PF01053 Cys/Met metabolism PLP-dependent enzyme M1S39_09690 PF00561 alpha/beta hydrolase fold M1S39_09695 PF08241 Methyltransferase domain M1S39_09725 PF01230 HIT domain M1S39_09760 PF00005 ABC transporter M1S39_09765 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion M1S39_09775 PF02684 Lipid-A-disaccharide synthetase M1S39_09780 PF00593 TonB dependent receptor M1S39_09780 PF07715 TonB-dependent Receptor Plug Domain M1S39_09800 PF01925 Sulfite exporter TauE/SafE M1S39_09805 PF00793 DAHP synthetase I family M1S39_09810 PF02654 Cobalamin-5-phosphate synthase M1S39_09825 PF02277 Phosphoribosyltransferase M1S39_09830 PF02283 Cobinamide kinase / cobinamide phosphate guanyltransferase M1S39_09840 PF13419 Haloacid dehalogenase-like hydrolase M1S39_09865 PF07715 TonB-dependent Receptor Plug Domain M1S39_09865 PF00593 TonB dependent receptor M1S39_09880 PF04183 IucA / IucC family M1S39_09880 PF06276 Ferric iron reductase FhuF-like transporter M1S39_09885 PF06276 Ferric iron reductase FhuF-like transporter M1S39_09885 PF04183 IucA / IucC family M1S39_09890 PF07690 Major Facilitator Superfamily M1S39_09895 PF13434 L-lysine 6-monooxygenase (NADPH-requiring) M1S39_09900 PF04183 IucA / IucC family M1S39_09900 PF06276 Ferric iron reductase FhuF-like transporter M1S39_09905 PF04073 Aminoacyl-tRNA editing domain M1S39_09915 PF03109 ABC1 family M1S39_09920 PF02771 Acyl-CoA dehydrogenase, N-terminal domain M1S39_09920 PF00441 Acyl-CoA dehydrogenase, C-terminal domain M1S39_09920 PF02770 Acyl-CoA dehydrogenase, middle domain M1S39_09925 PF02770 Acyl-CoA dehydrogenase, middle domain M1S39_09925 PF02771 Acyl-CoA dehydrogenase, N-terminal domain M1S39_09925 PF00441 Acyl-CoA dehydrogenase, C-terminal domain M1S39_09930 PF00487 Fatty acid desaturase M1S39_09935 PF12852 Cupin M1S39_09935 PF12833 Helix-turn-helix domain M1S39_09940 PF09312 SurA N-terminal domain M1S39_09940 PF00639 PPIC-type PPIASE domain M1S39_09945 PF00216 Bacterial DNA-binding protein M1S39_09960 PF02082 Transcriptional regulator M1S39_09965 PF00266 Aminotransferase class-V M1S39_09970 PF01592 NifU-like N terminal domain M1S39_09975 PF01521 Iron-sulphur cluster biosynthesis M1S39_09980 PF07743 HSCB C-terminal oligomerisation domain M1S39_09980 PF00226 DnaJ domain M1S39_09985 PF00012 Hsp70 protein M1S39_09990 PF00111 2Fe-2S iron-sulfur cluster binding domain M1S39_09995 PF00211 Adenylate and Guanylate cyclase catalytic domain M1S39_10005 PF00270 DEAD/DEAH box helicase M1S39_10005 PF00271 Helicase conserved C-terminal domain M1S39_10005 PF03461 TRCF domain M1S39_10005 PF17757 UvrB interaction domain M1S39_10005 PF02559 CarD-like/TRCF domain M1S39_10025 PF03737 Aldolase/RraA M1S39_10030 PF13460 NAD(P)H-binding M1S39_10035 PF01649 Ribosomal protein S20 M1S39_10045 PF00459 Inositol monophosphatase family M1S39_10060 PF00005 ABC transporter M1S39_10060 PF08352 Oligopeptide/dipeptide transporter, C-terminal region M1S39_10065 PF00528 Binding-protein-dependent transport system inner membrane component M1S39_10070 PF00528 Binding-protein-dependent transport system inner membrane component M1S39_10075 PF01432 Peptidase family M3 M1S39_10095 PF07715 TonB-dependent Receptor Plug Domain M1S39_10095 PF00593 TonB dependent receptor M1S39_10105 PF01618 MotA/TolQ/ExbB proton channel family M1S39_10110 PF02472 Biopolymer transport protein ExbD/TolR M1S39_10115 PF02472 Biopolymer transport protein ExbD/TolR M1S39_10125 PF01274 Malate synthase M1S39_10130 PF03969 AFG1-like ATPase M1S39_10140 PF00743 Flavin-binding monooxygenase-like M1S39_10150 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family M1S39_10160 PF00216 Bacterial DNA-binding protein M1S39_10165 PF00575 S1 RNA binding domain M1S39_10170 PF02224 Cytidylate kinase M1S39_10180 PF14437 MafB19-like deaminase M1S39_10190 PF03167 Uracil DNA glycosylase superfamily M1S39_10200 PF03934 Type II secretion system (T2SS), protein K M1S39_10205 PF11612 Type II secretion system (T2SS), protein J M1S39_10205 PF07963 Prokaryotic N-terminal methylation motif M1S39_10210 PF07963 Prokaryotic N-terminal methylation motif M1S39_10210 PF02501 Type II secretion system (T2SS), protein I M1S39_10225 PF01026 TatD related DNase M1S39_10235 PF09115 DNA polymerase III, delta subunit, C terminal M1S39_10240 PF02348 Cytidylyltransferase M1S39_10245 PF02606 Tetraacyldisaccharide-1-P 4'-kinase M1S39_10250 PF00005 ABC transporter M1S39_10250 PF00664 ABC transporter transmembrane region M1S39_10260 PF01618 MotA/TolQ/ExbB proton channel family M1S39_10265 PF17762 HTH domain found in ParB protein M1S39_10265 PF02195 ParB-like nuclease domain M1S39_10270 PF13614 AAA domain M1S39_10275 PF02527 rRNA small subunit methyltransferase G M1S39_10280 PF00483 Nucleotidyl transferase M1S39_10285 PF01636 Phosphotransferase enzyme family M1S39_10290 PF04453 LPS transport system D M1S39_10290 PF03968 OstA-like protein M1S39_10295 PF00639 PPIC-type PPIASE domain M1S39_10295 PF09312 SurA N-terminal domain M1S39_10300 PF01116 Fructose-bisphosphate aldolase class-II M1S39_10310 PF00162 Phosphoglycerate kinase M1S39_10320 PF02545 Maf-like protein M1S39_10325 PF08007 Cupin superfamily protein M1S39_10340 PF00375 Sodium:dicarboxylate symporter family M1S39_10345 PF06912 Protein of unknown function (DUF1275) M1S39_10350 PF09831 Uncharacterized protein conserved in bacteria (DUF2058) M1S39_10355 PF00664 ABC transporter transmembrane region M1S39_10355 PF00005 ABC transporter M1S39_10365 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term M1S39_10365 PF12833 Helix-turn-helix domain M1S39_10370 PF01597 Glycine cleavage H-protein M1S39_10375 PF02146 Sir2 family M1S39_10380 PF00474 Sodium:solute symporter family M1S39_10385 PF01037 Lrp/AsnC ligand binding domain M1S39_10390 PF00171 Aldehyde dehydrogenase family M1S39_10390 PF01619 Proline dehydrogenase M1S39_10390 PF14850 DNA-binding domain of Proline dehydrogenase M1S39_10390 PF18327 Proline utilization A proline dehydrogenase N-terminal domain M1S39_10395 PF04229 GrpB protein M1S39_10400 PF05958 tRNA (Uracil-5-)-methyltransferase M1S39_10410 PF09992 Phosphodiester glycosidase M1S39_10420 PF04264 YceI-like domain M1S39_10430 PF02779 Transketolase, pyrimidine binding domain M1S39_10430 PF02780 Transketolase, C-terminal domain M1S39_10430 PF00456 Transketolase, thiamine diphosphate binding domain M1S39_10435 PF02773 S-adenosylmethionine synthetase, C-terminal domain M1S39_10435 PF02772 S-adenosylmethionine synthetase, central domain M1S39_10435 PF00438 S-adenosylmethionine synthetase, N-terminal domain M1S39_10460 PF00905 Penicillin binding protein transpeptidase domain M1S39_10475 PF02075 Crossover junction endodeoxyribonuclease RuvC M1S39_10480 PF03853 YjeF-related protein N-terminus M1S39_10480 PF01256 Carbohydrate kinase M1S39_10485 PF08331 Domain of unknown function (DUF1730) M1S39_10490 PF06968 Biotin and Thiamin Synthesis associated domain M1S39_10490 PF04055 Radical SAM superfamily M1S39_10505 PF16970 Type-1 fimbrial protein, A M1S39_10510 PF02753 Pili assembly chaperone PapD, C-terminal domain M1S39_10510 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain M1S39_10535 PF00892 EamA-like transporter family M1S39_10545 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin M1S39_10555 PF03466 LysR substrate binding domain M1S39_10555 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M1S39_10575 PF00440 Bacterial regulatory proteins, tetR family M1S39_10585 PF01709 Transcriptional regulator M1S39_10590 PF01037 Lrp/AsnC ligand binding domain M1S39_10600 PF00005 ABC transporter M1S39_10605 PF00528 Binding-protein-dependent transport system inner membrane component M1S39_10610 PF00528 Binding-protein-dependent transport system inner membrane component M1S39_10625 PF08028 Acyl-CoA dehydrogenase, C-terminal domain M1S39_10625 PF02771 Acyl-CoA dehydrogenase, N-terminal domain M1S39_10635 PF00296 Luciferase-like monooxygenase M1S39_10640 PF03180 NLPA lipoprotein M1S39_10645 PF03180 NLPA lipoprotein M1S39_10650 PF00005 ABC transporter M1S39_10650 PF09383 NIL domain M1S39_10655 PF00528 Binding-protein-dependent transport system inner membrane component M1S39_10660 PF01926 50S ribosome-binding GTPase M1S39_10660 PF06071 Protein of unknown function (DUF933) M1S39_10685 PF03591 AzlC protein M1S39_10690 PF05437 Branched-chain amino acid transport protein (AzlD) M1S39_10700 PF02222 ATP-grasp domain M1S39_10705 PF08335 GlnD PII-uridylyltransferase M1S39_10705 PF01966 HD domain M1S39_10705 PF01909 Nucleotidyltransferase domain M1S39_10710 PF00155 Aminotransferase class I and II M1S39_10720 PF12852 Cupin M1S39_10720 PF12833 Helix-turn-helix domain M1S39_10725 PF00255 Glutathione peroxidase M1S39_10730 PF01641 SelR domain M1S39_10735 PF00155 Aminotransferase class I and II M1S39_10740 PF00375 Sodium:dicarboxylate symporter family M1S39_10745 PF00710 Asparaginase, N-terminal M1S39_10745 PF17763 Glutaminase/Asparaginase C-terminal domain M1S39_10750 PF14579 Helix-hairpin-helix motif M1S39_10750 PF17657 Bacterial DNA polymerase III alpha subunit finger domain M1S39_10750 PF01336 OB-fold nucleic acid binding domain M1S39_10750 PF02811 PHP domain M1S39_10750 PF07733 Bacterial DNA polymerase III alpha NTPase domain M1S39_10755 PF00588 SpoU rRNA Methylase family M1S39_10760 PF00132 Bacterial transferase hexapeptide (six repeats) M1S39_10780 PF07992 Pyridine nucleotide-disulphide oxidoreductase M1S39_10780 PF13192 Thioredoxin domain M1S39_10795 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M1S39_10795 PF03466 LysR substrate binding domain M1S39_10800 PF01758 Sodium Bile acid symporter family M1S39_10805 PF01022 Bacterial regulatory protein, arsR family M1S39_10810 PF03960 ArsC family M1S39_10820 PF13382 Adenine deaminase C-terminal domain M1S39_10820 PF01979 Amidohydrolase family M1S39_10830 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M1S39_10830 PF03466 LysR substrate binding domain M1S39_10840 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin M1S39_10845 PF01177 Asp/Glu/Hydantoin racemase M1S39_10850 PF02668 Taurine catabolism dioxygenase TauD, TfdA family M1S39_10855 PF00528 Binding-protein-dependent transport system inner membrane component M1S39_10860 PF00005 ABC transporter M1S39_10865 PF04069 Substrate binding domain of ABC-type glycine betaine transport system M1S39_10875 PF00083 Sugar (and other) transporter M1S39_10880 PF00296 Luciferase-like monooxygenase M1S39_10885 PF02770 Acyl-CoA dehydrogenase, middle domain M1S39_10885 PF02771 Acyl-CoA dehydrogenase, N-terminal domain M1S39_10885 PF08028 Acyl-CoA dehydrogenase, C-terminal domain M1S39_10895 PF01654 Cytochrome bd terminal oxidase subunit I M1S39_10900 PF02322 Cytochrome bd terminal oxidase subunit II M1S39_10910 PF00155 Aminotransferase class I and II M1S39_10910 PF00392 Bacterial regulatory proteins, gntR family M1S39_10915 PF03466 LysR substrate binding domain M1S39_10915 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M1S39_10930 PF00698 Acyl transferase domain M1S39_10935 PF10620 Phosphoribosyl-dephospho-CoA transferase MdcG M1S39_10945 PF01039 Carboxyl transferase domain M1S39_10950 PF06857 Malonate decarboxylase delta subunit (MdcD) M1S39_10955 PF01874 ATP:dephospho-CoA triphosphoribosyl transferase M1S39_10960 PF16957 Malonate decarboxylase, alpha subunit, transporter M1S39_10965 PF07690 Major Facilitator Superfamily M1S39_10980 PF00392 Bacterial regulatory proteins, gntR family M1S39_10980 PF00155 Aminotransferase class I and II M1S39_10985 PF04172 LrgB-like family M1S39_10990 PF03788 LrgA family M1S39_10995 PF03466 LysR substrate binding domain M1S39_10995 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M1S39_11000 PF14834 Glutathione S-transferase, C-terminal domain M1S39_11000 PF02798 Glutathione S-transferase, N-terminal domain M1S39_11005 PF02798 Glutathione S-transferase, N-terminal domain M1S39_11010 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M1S39_11010 PF03466 LysR substrate binding domain M1S39_11020 PF00581 Rhodanese-like domain M1S39_11025 PF00132 Bacterial transferase hexapeptide (six repeats) M1S39_11035 PF00266 Aminotransferase class-V M1S39_11045 PF01810 LysE type translocator M1S39_11050 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M1S39_11050 PF03466 LysR substrate binding domain M1S39_11060 PF00497 Bacterial extracellular solute-binding proteins, family 3 M1S39_11065 PF00497 Bacterial extracellular solute-binding proteins, family 3 M1S39_11070 PF00005 ABC transporter M1S39_11075 PF00528 Binding-protein-dependent transport system inner membrane component M1S39_11080 PF00528 Binding-protein-dependent transport system inner membrane component M1S39_11095 PF00072 Response regulator receiver domain M1S39_11100 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M1S39_11100 PF00512 His Kinase A (phospho-acceptor) domain M1S39_11100 PF09308 LuxQ, periplasmic M1S39_11100 PF00072 Response regulator receiver domain M1S39_11110 PF01037 Lrp/AsnC ligand binding domain M1S39_11110 PF13404 AsnC-type helix-turn-helix domain M1S39_11120 PF00717 Peptidase S24-like M1S39_11150 PF18011 C-terminal domain found in long catalases M1S39_11150 PF06628 Catalase-related immune-responsive M1S39_11150 PF00199 Catalase M1S39_11160 PF18146 Damage-inducible protein CinA KH domain M1S39_11160 PF00994 Probable molybdopterin binding domain M1S39_11160 PF02464 Competence-damaged protein M1S39_11195 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M1S39_11195 PF03466 LysR substrate binding domain M1S39_11215 PF00501 AMP-binding enzyme M1S39_11215 PF13193 AMP-binding enzyme C-terminal domain M1S39_11220 PF00440 Bacterial regulatory proteins, tetR family M1S39_11225 PF00441 Acyl-CoA dehydrogenase, C-terminal domain M1S39_11225 PF02771 Acyl-CoA dehydrogenase, N-terminal domain M1S39_11225 PF02770 Acyl-CoA dehydrogenase, middle domain M1S39_11230 PF01039 Carboxyl transferase domain M1S39_11235 PF00378 Enoyl-CoA hydratase/isomerase M1S39_11240 PF18140 Propionyl-coenzyme A carboxylase BT domain M1S39_11240 PF00289 Biotin carboxylase, N-terminal domain M1S39_11240 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain M1S39_11240 PF00364 Biotin-requiring enzyme M1S39_11240 PF02785 Biotin carboxylase C-terminal domain M1S39_11245 PF00682 HMGL-like M1S39_11250 PF03466 LysR substrate binding domain M1S39_11250 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M1S39_11265 PF00441 Acyl-CoA dehydrogenase, C-terminal domain M1S39_11265 PF12806 Acetyl-CoA dehydrogenase C-terminal like M1S39_11265 PF02770 Acyl-CoA dehydrogenase, middle domain M1S39_11265 PF02771 Acyl-CoA dehydrogenase, N-terminal domain M1S39_11275 PF07690 Major Facilitator Superfamily M1S39_11285 PF01144 Coenzyme A transferase M1S39_11290 PF01144 Coenzyme A transferase M1S39_11295 PF07690 Major Facilitator Superfamily M1S39_11300 PF02770 Acyl-CoA dehydrogenase, middle domain M1S39_11300 PF02771 Acyl-CoA dehydrogenase, N-terminal domain M1S39_11300 PF00441 Acyl-CoA dehydrogenase, C-terminal domain M1S39_11305 PF00378 Enoyl-CoA hydratase/isomerase M1S39_11315 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain M1S39_11315 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain M1S39_11315 PF18321 3-hydroxybutyryl-CoA dehydrogenase reduced Rossmann-fold domain M1S39_11320 PF02803 Thiolase, C-terminal domain M1S39_11320 PF00108 Thiolase, N-terminal domain M1S39_11325 PF09339 IclR helix-turn-helix domain M1S39_11330 PF07690 Major Facilitator Superfamily M1S39_11335 PF03060 Nitronate monooxygenase M1S39_11340 PF00378 Enoyl-CoA hydratase/isomerase M1S39_11345 PF09339 IclR helix-turn-helix domain M1S39_11350 PF02515 CoA-transferase family III M1S39_11355 PF02770 Acyl-CoA dehydrogenase, middle domain M1S39_11355 PF02771 Acyl-CoA dehydrogenase, N-terminal domain M1S39_11355 PF00441 Acyl-CoA dehydrogenase, C-terminal domain M1S39_11360 PF07690 Major Facilitator Superfamily M1S39_11365 PF13419 Haloacid dehalogenase-like hydrolase M1S39_11370 PF00266 Aminotransferase class-V M1S39_11375 PF01266 FAD dependent oxidoreductase M1S39_11380 PF00528 Binding-protein-dependent transport system inner membrane component M1S39_11385 PF00005 ABC transporter M1S39_11385 PF08402 TOBE domain M1S39_11395 PF00392 Bacterial regulatory proteins, gntR family M1S39_11395 PF07702 UTRA domain M1S39_11400 PF01494 FAD binding domain M1S39_11405 PF09339 IclR helix-turn-helix domain M1S39_11405 PF01614 Bacterial transcriptional regulator M1S39_11410 PF02525 Flavodoxin-like fold M1S39_11415 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M1S39_11415 PF03466 LysR substrate binding domain M1S39_11420 PF02627 Carboxymuconolactone decarboxylase family M1S39_11425 PF00171 Aldehyde dehydrogenase family M1S39_11435 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin M1S39_11445 PF00171 Aldehyde dehydrogenase family M1S39_11450 PF00296 Luciferase-like monooxygenase M1S39_11455 PF01613 Flavin reductase like domain M1S39_11460 PF12697 Alpha/beta hydrolase family M1S39_11480 PF01292 Prokaryotic cytochrome b561 M1S39_11485 PF00199 Catalase M1S39_11520 PF03061 Thioesterase superfamily M1S39_11525 PF00132 Bacterial transferase hexapeptide (six repeats) M1S39_11530 PF08223 PaaX-like protein C-terminal domain M1S39_11530 PF07848 PaaX-like protein M1S39_11535 PF00501 AMP-binding enzyme M1S39_11535 PF14535 AMP-binding enzyme C-terminal domain M1S39_11540 PF02803 Thiolase, C-terminal domain M1S39_11540 PF00108 Thiolase, N-terminal domain M1S39_11545 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain M1S39_11545 PF18321 3-hydroxybutyryl-CoA dehydrogenase reduced Rossmann-fold domain M1S39_11545 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain M1S39_11550 PF00378 Enoyl-CoA hydratase/isomerase M1S39_11555 PF00378 Enoyl-CoA hydratase/isomerase M1S39_11560 PF00111 2Fe-2S iron-sulfur cluster binding domain M1S39_11560 PF00175 Oxidoreductase NAD-binding domain M1S39_11560 PF00970 Oxidoreductase FAD-binding domain M1S39_11565 PF01883 Iron-sulfur cluster assembly protein M1S39_11570 PF05138 Phenylacetic acid catabolic protein M1S39_11575 PF06243 Phenylacetic acid degradation B M1S39_11580 PF05138 Phenylacetic acid catabolic protein M1S39_11585 PF01575 MaoC like domain M1S39_11585 PF00171 Aldehyde dehydrogenase family M1S39_11590 PF03313 Serine dehydratase alpha chain M1S39_11590 PF03315 Serine dehydratase beta chain M1S39_11595 PF13520 Amino acid permease M1S39_11600 PF00171 Aldehyde dehydrogenase family M1S39_11605 PF00083 Sugar (and other) transporter M1S39_11615 PF04324 BFD-like [2Fe-2S] binding domain M1S39_11615 PF07992 Pyridine nucleotide-disulphide oxidoreductase M1S39_11625 PF01266 FAD dependent oxidoreductase M1S39_11630 PF05544 Proline racemase M1S39_11635 PF00392 Bacterial regulatory proteins, gntR family M1S39_11645 PF00701 Dihydrodipicolinate synthetase family M1S39_11655 PF09278 MerR, DNA binding M1S39_11655 PF00376 MerR family regulatory protein M1S39_11670 PF02677 Epoxyqueuosine reductase QueH M1S39_11685 PF07690 Major Facilitator Superfamily M1S39_11690 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region M1S39_11700 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M1S39_11700 PF03466 LysR substrate binding domain M1S39_11720 PF05936 Bacterial Type VI secretion, VC_A0110, EvfL, ImpJ, VasE M1S39_11725 PF06812 ImpA, N-terminal, type VI secretion system M1S39_11730 PF10431 C-terminal, D2-small domain, of ClpB protein M1S39_11730 PF17871 AAA lid domain M1S39_11730 PF07724 AAA domain (Cdc48 subfamily) M1S39_11730 PF00004 ATPase family associated with various cellular activities (AAA) M1S39_11745 PF01389 OmpA-like transmembrane domain M1S39_11745 PF00691 OmpA family M1S39_11755 PF14331 ImcF-related N-terminal domain M1S39_11755 PF06761 Intracellular multiplication and human macrophage-killing M1S39_11755 PF06744 Type VI secretion protein IcmF C-terminal M1S39_11770 PF05947 Type VI secretion system, TssF M1S39_11785 PF05943 Type VI secretion protein, EvpB/VC_A0108, tail sheath M1S39_11810 PF00005 ABC transporter M1S39_11815 PF00497 Bacterial extracellular solute-binding proteins, family 3 M1S39_11820 PF01425 Amidase M1S39_11825 PF01402 Ribbon-helix-helix protein, copG family M1S39_11825 PF08753 NikR C terminal nickel binding domain M1S39_11845 PF02525 Flavodoxin-like fold M1S39_11850 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain M1S39_11850 PF00289 Biotin carboxylase, N-terminal domain M1S39_11850 PF02785 Biotin carboxylase C-terminal domain M1S39_11865 PF00107 Zinc-binding dehydrogenase M1S39_11865 PF08240 Alcohol dehydrogenase GroES-like domain M1S39_11865 PF13823 Alcohol dehydrogenase GroES-associated M1S39_11875 PF00440 Bacterial regulatory proteins, tetR family M1S39_11895 PF00654 Voltage gated chloride channel M1S39_11900 PF00289 Biotin carboxylase, N-terminal domain M1S39_11900 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain M1S39_11900 PF02785 Biotin carboxylase C-terminal domain M1S39_11900 PF00364 Biotin-requiring enzyme M1S39_11910 PF07286 Protein of unknown function (DUF1445) M1S39_11915 PF03746 LamB/YcsF family M1S39_11920 PF01566 Natural resistance-associated macrophage protein M1S39_11925 PF03466 LysR substrate binding domain M1S39_11925 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M1S39_11940 PF05593 RHS Repeat M1S39_11940 PF03527 RHS protein M1S39_11945 PF13296 Putative type VI secretion system Rhs element Vgr M1S39_11945 PF04717 Type VI secretion system, phage-baseplate injector M1S39_11945 PF10106 Uncharacterized protein conserved in bacteria (DUF2345) M1S39_11960 PF03050 Transposase IS66 family M1S39_11960 PF13817 IS66 C-terminal element M1S39_11960 PF13007 Transposase C of IS166 homeodomain M1S39_11960 PF13005 zinc-finger binding domain of transposase IS66 M1S39_11970 PF13419 Haloacid dehalogenase-like hydrolase M1S39_11990 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain M1S39_11990 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain M1S39_12010 PF07690 Major Facilitator Superfamily M1S39_12025 PF03279 Bacterial lipid A biosynthesis acyltransferase M1S39_12030 PF00563 EAL domain M1S39_12030 PF00990 Diguanylate cyclase, GGDEF domain M1S39_12030 PF03707 Bacterial signalling protein N terminal repeat M1S39_12035 PF00892 EamA-like transporter family M1S39_12040 PF01037 Lrp/AsnC ligand binding domain M1S39_12045 PF05190 MutS family domain IV M1S39_12045 PF05192 MutS domain III M1S39_12045 PF00488 MutS domain V M1S39_12045 PF01624 MutS domain I M1S39_12045 PF05188 MutS domain II M1S39_12055 PF11953 Domain of unknown function (DUF3470) M1S39_12055 PF00037 4Fe-4S binding domain M1S39_12065 PF01596 O-methyltransferase M1S39_12075 PF00132 Bacterial transferase hexapeptide (six repeats) M1S39_12080 PF01205 Uncharacterized protein family UPF0029 M1S39_12090 PF00664 ABC transporter transmembrane region M1S39_12090 PF00005 ABC transporter M1S39_12090 PF03412 Peptidase C39 family M1S39_12095 PF02321 Outer membrane efflux protein M1S39_12100 PF12399 Branched-chain amino acid ATP-binding cassette transporter M1S39_12100 PF00005 ABC transporter M1S39_12105 PF03968 OstA-like protein M1S39_12120 PF01380 SIS domain M1S39_12120 PF00571 CBS domain M1S39_12125 PF01406 tRNA synthetases class I (C) catalytic domain M1S39_12125 PF09190 DALR domain M1S39_12150 PF01638 HxlR-like helix-turn-helix M1S39_12155 PF07690 Major Facilitator Superfamily M1S39_12180 PF14748 Pyrroline-5-carboxylate reductase dimerisation M1S39_12180 PF03807 NADP oxidoreductase coenzyme F420-dependent M1S39_12190 PF00313 'Cold-shock' DNA-binding domain M1S39_12195 PF01810 LysE type translocator M1S39_12225 PF02601 Exonuclease VII, large subunit M1S39_12225 PF13742 OB-fold nucleic acid binding domain M1S39_12260 PF09278 MerR, DNA binding M1S39_12260 PF00376 MerR family regulatory protein M1S39_12265 PF00403 Heavy-metal-associated domain M1S39_12270 PF00403 Heavy-metal-associated domain M1S39_12275 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M1S39_12275 PF03466 LysR substrate binding domain M1S39_12285 PF00355 Rieske [2Fe-2S] domain M1S39_12285 PF00848 Ring hydroxylating alpha subunit (catalytic domain) M1S39_12290 PF00866 Ring hydroxylating beta subunit M1S39_12295 PF00111 2Fe-2S iron-sulfur cluster binding domain M1S39_12295 PF00175 Oxidoreductase NAD-binding domain M1S39_12295 PF00970 Oxidoreductase FAD-binding domain M1S39_12300 PF00106 short chain dehydrogenase M1S39_12305 PF03594 Benzoate membrane transport protein M1S39_12310 PF07690 Major Facilitator Superfamily M1S39_12320 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III M1S39_12320 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal M1S39_12325 PF04408 Helicase associated domain (HA2) M1S39_12325 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold M1S39_12325 PF00270 DEAD/DEAH box helicase M1S39_12325 PF11898 Domain of unknown function (DUF3418) M1S39_12325 PF00271 Helicase conserved C-terminal domain M1S39_12330 PF10417 C-terminal domain of 1-Cys peroxiredoxin M1S39_12330 PF00578 AhpC/TSA family M1S39_12360 PF00043 Glutathione S-transferase, C-terminal domain M1S39_12360 PF02798 Glutathione S-transferase, N-terminal domain M1S39_12370 PF02390 Putative methyltransferase M1S39_12375 PF00043 Glutathione S-transferase, C-terminal domain M1S39_12375 PF13417 Glutathione S-transferase, N-terminal domain M1S39_12385 PF13488 Glycine zipper M1S39_12385 PF00691 OmpA family M1S39_12390 PF01979 Amidohydrolase family M1S39_12395 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain M1S39_12395 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain M1S39_12405 PF10672 S-adenosylmethionine-dependent methyltransferase M1S39_12405 PF01170 Putative RNA methylase family UPF0020 M1S39_12405 PF02926 THUMP domain M1S39_12420 PF10431 C-terminal, D2-small domain, of ClpB protein M1S39_12420 PF02861 Clp amino terminal domain, pathogenicity island component M1S39_12420 PF17871 AAA lid domain M1S39_12420 PF07724 AAA domain (Cdc48 subfamily) M1S39_12420 PF00004 ATPase family associated with various cellular activities (AAA) M1S39_12435 PF02566 OsmC-like protein M1S39_12445 PF13545 Crp-like helix-turn-helix domain M1S39_12445 PF00027 Cyclic nucleotide-binding domain M1S39_12455 PF00248 Aldo/keto reductase family M1S39_12470 PF00709 Adenylosuccinate synthetase M1S39_12475 PF13393 Histidyl-tRNA synthetase M1S39_12480 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain M1S39_12480 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain M1S39_12485 PF02272 DHHA1 domain M1S39_12485 PF01411 tRNA synthetases class II (A) M1S39_12485 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain M1S39_12490 PF00696 Amino acid kinase family M1S39_12490 PF01842 ACT domain M1S39_12490 PF13840 ACT domain M1S39_12495 PF02599 Global regulator protein family M1S39_12500 PF01351 Ribonuclease HII M1S39_12510 PF01292 Prokaryotic cytochrome b561 M1S39_12515 PF00962 Adenosine/AMP deaminase M1S39_12520 PF00860 Permease family M1S39_12530 PF00743 Flavin-binding monooxygenase-like M1S39_12535 PF00106 short chain dehydrogenase M1S39_12545 PF17954 Quercetinase C-terminal cupin domain M1S39_12545 PF02678 Pirin M1S39_12550 PF17932 Tetracyclin repressor-like, C-terminal domain M1S39_12550 PF00440 Bacterial regulatory proteins, tetR family M1S39_12560 PF00106 short chain dehydrogenase M1S39_12570 PF13610 DDE domain M1S39_12580 PF07729 FCD domain M1S39_12580 PF00392 Bacterial regulatory proteins, gntR family M1S39_12590 PF00324 Amino acid permease M1S39_12595 PF01266 FAD dependent oxidoreductase M1S39_12600 PF00324 Amino acid permease M1S39_12640 PF03527 RHS protein M1S39_12640 PF05593 RHS Repeat M1S39_12645 PF04717 Type VI secretion system, phage-baseplate injector M1S39_12645 PF10106 Uncharacterized protein conserved in bacteria (DUF2345) M1S39_12645 PF13296 Putative type VI secretion system Rhs element Vgr M1S39_12665 PF03180 NLPA lipoprotein M1S39_12670 PF05987 Bacterial protein of unknown function (DUF898) M1S39_12685 PF00724 NADH:flavin oxidoreductase / NADH oxidase family M1S39_12685 PF07992 Pyridine nucleotide-disulphide oxidoreductase M1S39_12690 PF00764 Arginosuccinate synthase M1S39_12695 PF00563 EAL domain M1S39_12695 PF01590 GAF domain M1S39_12695 PF00990 Diguanylate cyclase, GGDEF domain M1S39_12695 PF00360 Phytochrome region M1S39_12700 PF01979 Amidohydrolase family M1S39_12705 PF00929 Exonuclease M1S39_12715 PF07715 TonB-dependent Receptor Plug Domain M1S39_12715 PF00593 TonB dependent receptor M1S39_12720 PF00724 NADH:flavin oxidoreductase / NADH oxidase family M1S39_12720 PF07992 Pyridine nucleotide-disulphide oxidoreductase M1S39_12725 PF00005 ABC transporter M1S39_12725 PF08352 Oligopeptide/dipeptide transporter, C-terminal region M1S39_12730 PF00528 Binding-protein-dependent transport system inner membrane component M1S39_12730 PF12911 N-terminal TM domain of oligopeptide transport permease C M1S39_12735 PF00528 Binding-protein-dependent transport system inner membrane component M1S39_12740 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle M1S39_12745 PF01464 Transglycosylase SLT domain M1S39_12745 PF01476 LysM domain M1S39_12745 PF01464 Transglycosylase SLT domain M1S39_12745 PF01476 LysM domain M1S39_12750 PF00929 Exonuclease M1S39_12760 PF09297 NADH pyrophosphatase zinc ribbon domain M1S39_12760 PF00293 NUDIX domain M1S39_12770 PF04972 BON domain M1S39_12775 PF02021 Uncharacterised protein family UPF0102 M1S39_12780 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases M1S39_12790 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M1S39_12790 PF03466 LysR substrate binding domain M1S39_12795 PF01810 LysE type translocator M1S39_12805 PF13411 MerR HTH family regulatory protein M1S39_12815 PF01494 FAD binding domain M1S39_12820 PF01494 FAD binding domain M1S39_12825 PF05195 Aminopeptidase P, N-terminal domain M1S39_12825 PF00557 Metallopeptidase family M24 M1S39_12910 PF01551 Peptidase family M23 M1S39_12910 PF08525 Opacity-associated protein A N-terminal motif M1S39_12910 PF01476 LysM domain M1S39_13235 PF01812 5-formyltetrahydrofolate cyclo-ligase family M1S39_13240 PF00691 OmpA family M1S39_13240 PF04355 SmpA / OmlA family M1S39_13245 PF13018 Extended Signal Peptide of Type V secretion system M1S39_13245 PF05662 Coiled stalk of trimeric autotransporter adhesin M1S39_13245 PF03895 YadA-like membrane anchor domain M1S39_13245 PF05658 Head domain of trimeric autotransporter adhesin M1S39_13250 PF05362 Lon protease (S16) C-terminal proteolytic domain M1S39_13250 PF00004 ATPase family associated with various cellular activities (AAA) M1S39_13250 PF02190 ATP-dependent protease La (LON) substrate-binding domain M1S39_13255 PF02590 Predicted SPOUT methyltransferase M1S39_13260 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase M1S39_13270 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase M1S39_13270 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain M1S39_13275 PF04060 Putative Fe-S cluster M1S39_13280 PF00633 Helix-hairpin-helix motif M1S39_13280 PF10576 Iron-sulfur binding domain of endonuclease III M1S39_13280 PF00730 HhH-GPD superfamily base excision DNA repair protein M1S39_13290 PF05191 Adenylate kinase, active site lid M1S39_13305 PF03717 Penicillin-binding Protein dimerisation domain M1S39_13305 PF00905 Penicillin binding protein transpeptidase domain M1S39_13320 PF02492 CobW/HypB/UreG, nucleotide-binding domain M1S39_13325 PF01730 UreF M1S39_13330 PF02814 UreE urease accessory protein, N-terminal domain M1S39_13330 PF05194 UreE urease accessory protein, C-terminal domain M1S39_13335 PF01979 Amidohydrolase family M1S39_13335 PF00449 Urease alpha-subunit, N-terminal domain M1S39_13340 PF00699 Urease beta subunit M1S39_13345 PF00547 Urease, gamma subunit M1S39_13350 PF01774 UreD urease accessory protein M1S39_13365 PF00463 Isocitrate lyase family M1S39_13370 PF03466 LysR substrate binding domain M1S39_13370 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M1S39_13375 PF01595 Cyclin M transmembrane N-terminal domain M1S39_13375 PF03471 Transporter associated domain M1S39_13375 PF00571 CBS domain M1S39_13380 PF03600 Citrate transporter M1S39_13395 PF00009 Elongation factor Tu GTP binding domain M1S39_13400 PF01507 Phosphoadenosine phosphosulfate reductase family M1S39_13410 PF14052 Capsule assembly protein Wzi M1S39_13430 PF00301 Rubredoxin M1S39_13435 PF07992 Pyridine nucleotide-disulphide oxidoreductase M1S39_13435 PF18113 Rubredoxin binding C-terminal domain M1S39_13440 PF00561 alpha/beta hydrolase fold M1S39_13445 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M1S39_13445 PF03466 LysR substrate binding domain M1S39_13455 PF13089 Polyphosphate kinase N-terminal domain M1S39_13455 PF17941 Polyphosphate kinase C-terminal domain 1 M1S39_13455 PF13090 Polyphosphate kinase C-terminal domain 2 M1S39_13455 PF02503 Polyphosphate kinase middle domain M1S39_13460 PF00912 Transglycosylase M1S39_13465 PF01694 Rhomboid family M1S39_13475 PF00005 ABC transporter M1S39_13480 PF13472 GDSL-like Lipase/Acylhydrolase family M1S39_13485 PF00484 Carbonic anhydrase M1S39_13490 PF00561 alpha/beta hydrolase fold M1S39_13500 PF00593 TonB dependent receptor M1S39_13500 PF07715 TonB-dependent Receptor Plug Domain M1S39_13505 PF01106 NifU-like domain M1S39_13505 PF01521 Iron-sulphur cluster biosynthesis M1S39_13515 PF00884 Sulfatase M1S39_13520 PF03781 Sulfatase-modifying factor enzyme 1 M1S39_13535 PF00291 Pyridoxal-phosphate dependent enzyme M1S39_13540 PF01384 Phosphate transporter family M1S39_13545 PF02574 Homocysteine S-methyltransferase M1S39_13545 PF00809 Pterin binding enzyme M1S39_13545 PF02965 Vitamin B12 dependent methionine synthase, activation domain M1S39_13545 PF02607 B12 binding domain M1S39_13545 PF02310 B12 binding domain M1S39_13550 PF02780 Transketolase, C-terminal domain M1S39_13550 PF02779 Transketolase, pyrimidine binding domain M1S39_13555 PF00456 Transketolase, thiamine diphosphate binding domain M1S39_13560 PF07690 Major Facilitator Superfamily M1S39_13570 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M1S39_13570 PF03466 LysR substrate binding domain M1S39_13580 PF01263 Aldose 1-epimerase M1S39_13585 PF07690 Major Facilitator Superfamily M1S39_13590 PF12833 Helix-turn-helix domain M1S39_13590 PF02311 AraC-like ligand binding domain M1S39_13595 PF04960 Glutaminase M1S39_13600 PF01327 Polypeptide deformylase M1S39_13605 PF07690 Major Facilitator Superfamily M1S39_13615 PF00205 Thiamine pyrophosphate enzyme, central domain M1S39_13615 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain M1S39_13615 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain M1S39_13620 PF00171 Aldehyde dehydrogenase family M1S39_13625 PF01958 Domain of unknown function DUF108 M1S39_13625 PF03447 Homoserine dehydrogenase, NAD binding domain M1S39_13635 PF12697 Alpha/beta hydrolase family M1S39_13645 PF07690 Major Facilitator Superfamily M1S39_13650 PF07992 Pyridine nucleotide-disulphide oxidoreductase M1S39_13650 PF14759 Reductase C-terminal M1S39_13655 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily M1S39_13665 PF00355 Rieske [2Fe-2S] domain M1S39_13675 PF00355 Rieske [2Fe-2S] domain M1S39_13680 PF01614 Bacterial transcriptional regulator M1S39_13680 PF09339 IclR helix-turn-helix domain M1S39_13695 PF00378 Enoyl-CoA hydratase/isomerase M1S39_13705 PF00535 Glycosyl transferase family 2 M1S39_13710 PF14883 Hypothetical glycosyl hydrolase family 13 M1S39_13710 PF01522 Polysaccharide deacetylase M1S39_13715 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase M1S39_13720 PF07152 YaeQ protein M1S39_13725 PF00375 Sodium:dicarboxylate symporter family M1S39_13730 PF07683 Cobalamin synthesis protein cobW C-terminal domain M1S39_13730 PF02492 CobW/HypB/UreG, nucleotide-binding domain M1S39_13740 PF03061 Thioesterase superfamily M1S39_13750 PF02028 BCCT, betaine/carnitine/choline family transporter M1S39_13755 PF02028 BCCT, betaine/carnitine/choline family transporter M1S39_13760 PF13977 BetI-type transcriptional repressor, C-terminal M1S39_13760 PF00440 Bacterial regulatory proteins, tetR family M1S39_13765 PF00171 Aldehyde dehydrogenase family M1S39_13770 PF05199 GMC oxidoreductase M1S39_13770 PF00732 GMC oxidoreductase M1S39_13775 PF06039 Malate:quinone oxidoreductase (Mqo) M1S39_13785 PF02574 Homocysteine S-methyltransferase M1S39_13790 PF13520 Amino acid permease M1S39_13815 PF00701 Dihydrodipicolinate synthetase family M1S39_13820 PF00083 Sugar (and other) transporter M1S39_13890 PF10544 T5orf172 domain M1S39_13895 PF13614 AAA domain M1S39_14000 PF02767 DNA polymerase III beta subunit, central domain M1S39_14000 PF02768 DNA polymerase III beta subunit, C-terminal domain M1S39_14000 PF00712 DNA polymerase III beta subunit, N-terminal domain M1S39_14040 PF05016 ParE toxin of type II toxin-antitoxin system, parDE M1S39_14190 PF07007 Lysozyme inhibitor LprI M1S39_14235 PF01695 IstB-like ATP binding protein M1S39_14245 PF00145 C-5 cytosine-specific DNA methylase M1S39_14290 PF01381 Helix-turn-helix M1S39_14290 PF00717 Peptidase S24-like M1S39_14325 PF00929 Exonuclease M1S39_14400 PF07690 Major Facilitator Superfamily M1S39_14405 PF13533 Biotin-lipoyl like M1S39_14410 PF03061 Thioesterase superfamily M1S39_14415 PF00490 Delta-aminolevulinic acid dehydratase M1S39_14420 PF01266 FAD dependent oxidoreductase M1S39_14425 PF08338 Domain of unknown function (DUF1731) M1S39_14425 PF01370 NAD dependent epimerase/dehydratase family M1S39_14445 PF00149 Calcineurin-like phosphoesterase M1S39_14445 PF12320 Type 5 capsule protein repressor C-terminal domain M1S39_14455 PF01168 Alanine racemase, N-terminal domain M1S39_14460 PF00437 Type II/IV secretion system protein M1S39_14465 PF00437 Type II/IV secretion system protein M1S39_14470 PF01475 Ferric uptake regulator family M1S39_14475 PF04355 SmpA / OmlA family M1S39_14490 PF01814 Hemerythrin HHE cation binding domain M1S39_14495 PF13230 Glutamine amidotransferases class-II M1S39_14505 PF00696 Amino acid kinase family M1S39_14510 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I M1S39_14510 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II M1S39_14510 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III M1S39_14510 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain M1S39_14515 PF00692 dUTPase M1S39_14520 PF00580 UvrD/REP helicase N-terminal domain M1S39_14520 PF13361 UvrD-like helicase C-terminal domain M1S39_14525 PF00691 OmpA family M1S39_14525 PF13488 Glycine zipper M1S39_14530 PF01553 Acyltransferase M1S39_14540 PF03775 Septum formation inhibitor MinC, C-terminal domain M1S39_14545 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain M1S39_14550 PF03776 Septum formation topological specificity factor MinE M1S39_14570 PF01810 LysE type translocator M1S39_14575 PF13491 4TM region of DNA translocase FtsK/SpoIIIE M1S39_14575 PF17854 FtsK alpha domain M1S39_14575 PF09397 Ftsk gamma domain M1S39_14575 PF01580 FtsK/SpoIIIE family M1S39_14580 PF07992 Pyridine nucleotide-disulphide oxidoreductase M1S39_14585 PF03588 Leucyl/phenylalanyl-tRNA protein transferase M1S39_14590 PF04376 Arginine-tRNA-protein transferase, N terminus M1S39_14590 PF04377 Arginine-tRNA-protein transferase, C terminus M1S39_14595 PF00583 Acetyltransferase (GNAT) family M1S39_14610 PF00009 Elongation factor Tu GTP binding domain M1S39_14610 PF03144 Elongation factor Tu domain 2 M1S39_14610 PF03143 Elongation factor Tu C-terminal domain M1S39_14615 PF03764 Elongation factor G, domain IV M1S39_14615 PF14492 Elongation Factor G, domain II M1S39_14615 PF00009 Elongation factor Tu GTP binding domain M1S39_14615 PF03144 Elongation factor Tu domain 2 M1S39_14615 PF00679 Elongation factor G C-terminus M1S39_14620 PF00177 Ribosomal protein S7p/S5e M1S39_14625 PF00164 Ribosomal protein S12/S23 M1S39_14635 PF00109 Beta-ketoacyl synthase, N-terminal domain M1S39_14635 PF02801 Beta-ketoacyl synthase, C-terminal domain M1S39_14640 PF03653 Uncharacterised protein family (UPF0093) M1S39_14645 PF02678 Pirin M1S39_14645 PF05726 Pirin C-terminal cupin domain M1S39_14655 PF00795 Carbon-nitrogen hydrolase M1S39_14655 PF02540 NAD synthase M1S39_14670 PF00970 Oxidoreductase FAD-binding domain M1S39_14670 PF00175 Oxidoreductase NAD-binding domain M1S39_14670 PF00111 2Fe-2S iron-sulfur cluster binding domain M1S39_14675 PF00171 Aldehyde dehydrogenase family M1S39_14680 PF00355 Rieske [2Fe-2S] domain M1S39_14680 PF00848 Ring hydroxylating alpha subunit (catalytic domain) M1S39_14685 PF07859 alpha/beta hydrolase fold M1S39_14690 PF02028 BCCT, betaine/carnitine/choline family transporter M1S39_14695 PF00180 Isocitrate/isopropylmalate dehydrogenase M1S39_14700 PF03466 LysR substrate binding domain M1S39_14700 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M1S39_14720 PF00037 4Fe-4S binding domain M1S39_14725 PF01467 Cytidylyltransferase-like M1S39_14730 PF01668 SmpB protein M1S39_14735 PF03358 NADPH-dependent FMN reductase M1S39_14740 PF02578 Multi-copper polyphenol oxidoreductase laccase M1S39_14745 PF00849 RNA pseudouridylate synthase M1S39_14745 PF01479 S4 domain M1S39_14750 PF13525 Outer membrane lipoprotein M1S39_14755 PF08275 DNA primase catalytic core, N-terminal domain M1S39_14755 PF01807 CHC2 zinc finger M1S39_14755 PF10410 DnaB-helicase binding domain of primase M1S39_14755 PF08278 DNA primase DnaG DnaB-binding M1S39_14760 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain M1S39_14760 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain M1S39_14760 PF01488 Shikimate / quinate 5-dehydrogenase M1S39_14770 PF03550 Outer membrane lipoprotein LolB M1S39_14775 PF08544 GHMP kinases C terminal M1S39_14775 PF00288 GHMP kinases N terminal domain M1S39_14800 PF14572 Phosphoribosyl synthetase-associated domain M1S39_14800 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase M1S39_14805 PF01386 Ribosomal L25p family M1S39_14810 PF01195 Peptidyl-tRNA hydrolase M1S39_14815 PF02261 Aspartate decarboxylase M1S39_14830 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase M1S39_14840 PF08543 Phosphomethylpyrimidine kinase M1S39_14840 PF03070 TENA/THI-4/PQQC family M1S39_14840 PF02581 Thiamine monophosphate synthase M1S39_14845 PF01476 LysM domain M1S39_14845 PF04972 BON domain M1S39_14850 PF00550 Phosphopantetheine attachment site M1S39_14860 PF00698 Acyl transferase domain M1S39_14865 PF01783 Ribosomal L32p protein family M1S39_14870 PF02620 Large ribosomal RNA subunit accumulation protein YceD M1S39_14875 PF04315 Elongation factor P hydroxylase M1S39_14880 PF01300 Telomere recombination M1S39_14885 PF02616 Segregation and condensation protein ScpA M1S39_14890 PF04079 Segregation and condensation complex subunit ScpB M1S39_14895 PF00849 RNA pseudouridylate synthase M1S39_14895 PF01479 S4 domain M1S39_14910 PF00155 Aminotransferase class I and II M1S39_14915 PF04055 Radical SAM superfamily M1S39_14915 PF06968 Biotin and Thiamin Synthesis associated domain M1S39_14915 PF00202 Aminotransferase class-III M1S39_14920 PF12697 Alpha/beta hydrolase family M1S39_14920 PF08241 Methyltransferase domain M1S39_14925 PF02358 Trehalose-phosphatase M1S39_14930 PF00982 Glycosyltransferase family 20 M1S39_14935 PF07690 Major Facilitator Superfamily M1S39_14940 PF00210 Ferritin-like domain M1S39_14945 PF03120 NAD-dependent DNA ligase OB-fold domain M1S39_14945 PF03119 NAD-dependent DNA ligase C4 zinc finger domain M1S39_14945 PF12826 Helix-hairpin-helix motif M1S39_14945 PF00533 BRCA1 C Terminus (BRCT) domain M1S39_14945 PF01653 NAD-dependent DNA ligase adenylation domain M1S39_14955 PF06470 SMC proteins Flexible Hinge Domain M1S39_14955 PF02463 RecF/RecN/SMC N terminal domain M1S39_14965 PF01925 Sulfite exporter TauE/SafE M1S39_14975 PF03309 Type III pantothenate kinase M1S39_14980 PF02881 SRP54-type protein, helical bundle domain M1S39_14980 PF00448 SRP54-type protein, GTPase domain M1S39_14980 PF02978 Signal peptide binding domain M1S39_14990 PF01207 Dihydrouridine synthase (Dus) M1S39_15020 PF00692 dUTPase M1S39_15035 PF01048 Phosphorylase superfamily M1S39_15040 PF10609 NUBPL iron-transfer P-loop NTPase M1S39_15050 PF09334 tRNA synthetases class I (M) M1S39_15050 PF01588 Putative tRNA binding domain M1S39_15075 PF13533 Biotin-lipoyl like M1S39_15080 PF00291 Pyridoxal-phosphate dependent enzyme M1S39_15095 PF05552 Conserved TM helix M1S39_15110 PF00970 Oxidoreductase FAD-binding domain M1S39_15110 PF00175 Oxidoreductase NAD-binding domain M1S39_15115 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M1S39_15115 PF03466 LysR substrate binding domain M1S39_15120 PF00313 'Cold-shock' DNA-binding domain M1S39_15130 PF00361 Proton-conducting membrane transporter M1S39_15135 PF00361 Proton-conducting membrane transporter M1S39_15140 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus M1S39_15140 PF00361 Proton-conducting membrane transporter M1S39_15145 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L M1S39_15150 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 M1S39_15155 PF12838 4Fe-4S dicluster domain M1S39_15160 PF00146 NADH dehydrogenase M1S39_15165 PF00384 Molybdopterin oxidoreductase M1S39_15165 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region M1S39_15165 PF04879 Molybdopterin oxidoreductase Fe4S4 domain M1S39_15170 PF10531 SLBB domain M1S39_15170 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region M1S39_15170 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit M1S39_15180 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit M1S39_15180 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit M1S39_15185 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit M1S39_15190 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 M1S39_15195 PF00990 Diguanylate cyclase, GGDEF domain M1S39_15195 PF17151 Periplasmic sensor domain M1S39_15205 PF00672 HAMP domain M1S39_15205 PF00512 His Kinase A (phospho-acceptor) domain M1S39_15205 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M1S39_15210 PF00486 Transcriptional regulatory protein, C terminal M1S39_15210 PF00072 Response regulator receiver domain M1S39_15220 PF03477 ATP cone domain M1S39_15220 PF02867 Ribonucleotide reductase, barrel domain M1S39_15220 PF00317 Ribonucleotide reductase, all-alpha domain M1S39_15230 PF00268 Ribonucleotide reductase, small chain M1S39_15240 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M1S39_15240 PF00512 His Kinase A (phospho-acceptor) domain M1S39_15240 PF13755 Sensor N-terminal transmembrane domain M1S39_15240 PF13756 Stimulus-sensing domain M1S39_15240 PF00672 HAMP domain M1S39_15310 PF13360 PQQ-like domain M1S39_15310 PF01011 PQQ enzyme repeat M1S39_15335 PF02567 Phenazine biosynthesis-like protein M1S39_15360 PF01613 Flavin reductase like domain M1S39_15365 PF08267 Cobalamin-independent synthase, N-terminal domain M1S39_15365 PF01717 Cobalamin-independent synthase, Catalytic domain M1S39_15375 PF03466 LysR substrate binding domain M1S39_15375 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M1S39_15380 PF01810 LysE type translocator M1S39_15390 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term M1S39_15390 PF12833 Helix-turn-helix domain M1S39_15395 PF01546 Peptidase family M20/M25/M40 M1S39_15395 PF07687 Peptidase dimerisation domain M1S39_15405 PF03466 LysR substrate binding domain M1S39_15405 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M1S39_15410 PF07690 Major Facilitator Superfamily M1S39_15420 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M1S39_15420 PF03466 LysR substrate binding domain M1S39_15425 PF00890 FAD binding domain M1S39_15425 PF14537 Cytochrome c3 M1S39_15435 PF02515 CoA-transferase family III M1S39_15440 PF07690 Major Facilitator Superfamily M1S39_15445 PF00441 Acyl-CoA dehydrogenase, C-terminal domain M1S39_15445 PF02770 Acyl-CoA dehydrogenase, middle domain M1S39_15445 PF02771 Acyl-CoA dehydrogenase, N-terminal domain M1S39_15450 PF03466 LysR substrate binding domain M1S39_15450 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M1S39_15455 PF08240 Alcohol dehydrogenase GroES-like domain M1S39_15455 PF00107 Zinc-binding dehydrogenase M1S39_15460 PF00962 Adenosine/AMP deaminase M1S39_15485 PF02445 Quinolinate synthetase A protein M1S39_15490 PF01960 ArgJ family M1S39_15495 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain M1S39_15495 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain M1S39_15500 PF00893 Small Multidrug Resistance protein M1S39_15510 PF05275 Copper resistance protein B precursor (CopB) M1S39_15515 PF07732 Multicopper oxidase M1S39_15515 PF00394 Multicopper oxidase M1S39_15515 PF07731 Multicopper oxidase M1S39_15530 PF00834 Ribulose-phosphate 3 epimerase family M1S39_15540 PF00756 Putative esterase M1S39_15550 PF04445 Putative SAM-dependent methyltransferase M1S39_15555 PF00814 Glycoprotease family M1S39_15560 PF00132 Bacterial transferase hexapeptide (six repeats) M1S39_15565 PF00293 NUDIX domain M1S39_15605 PF04715 Anthranilate synthase component I, N terminal region M1S39_15605 PF00425 chorismate binding enzyme M1S39_15610 PF00155 Aminotransferase class I and II M1S39_15615 PF00815 Histidinol dehydrogenase M1S39_15620 PF01634 ATP phosphoribosyltransferase M1S39_15625 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) M1S39_15630 PF01722 BolA-like protein M1S39_15635 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein M1S39_15640 PF00309 Sigma-54 factor, Activator interacting domain (AID) M1S39_15640 PF04963 Sigma-54 factor, core binding domain M1S39_15640 PF04552 Sigma-54, DNA binding domain M1S39_15685 PF00795 Carbon-nitrogen hydrolase M1S39_15695 PF01047 MarR family M1S39_15700 PF02566 OsmC-like protein M1S39_15705 PF00437 Type II/IV secretion system protein M1S39_15725 PF01367 5'-3' exonuclease, C-terminal SAM fold M1S39_15725 PF00476 DNA polymerase family A M1S39_15725 PF01612 3'-5' exonuclease M1S39_15725 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain M1S39_15730 PF02325 YGGT family M1S39_15735 PF14748 Pyrroline-5-carboxylate reductase dimerisation M1S39_15735 PF03807 NADP oxidoreductase coenzyme F420-dependent M1S39_15740 PF09179 TilS substrate binding domain M1S39_15740 PF01171 PP-loop family M1S39_15740 PF11734 TilS substrate C-terminal domain M1S39_15745 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit M1S39_15750 PF02541 Ppx/GppA phosphatase family M1S39_15755 PF00085 Thioredoxin M1S39_15760 PF07498 Rho termination factor, N-terminal domain M1S39_15760 PF07497 Rho termination factor, RNA-binding domain M1S39_15760 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain M1S39_15775 PF00216 Bacterial DNA-binding protein M1S39_15780 PF03147 Ferredoxin-fold anticodon binding domain M1S39_15780 PF01588 Putative tRNA binding domain M1S39_15780 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain M1S39_15780 PF03483 B3/4 domain M1S39_15780 PF03484 tRNA synthetase B5 domain M1S39_15785 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain M1S39_15785 PF01409 tRNA synthetases class II core domain (F) M1S39_15805 PF00453 Ribosomal protein L20 M1S39_15810 PF01632 Ribosomal protein L35 M1S39_15825 PF09335 SNARE associated Golgi protein M1S39_15830 PF02798 Glutathione S-transferase, N-terminal domain M1S39_15830 PF00043 Glutathione S-transferase, C-terminal domain M1S39_15835 PF05198 Translation initiation factor IF-3, N-terminal domain M1S39_15835 PF00707 Translation initiation factor IF-3, C-terminal domain M1S39_15840 PF03129 Anticodon binding domain M1S39_15840 PF02824 TGS domain M1S39_15840 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) M1S39_15840 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain M1S39_15845 PF13193 AMP-binding enzyme C-terminal domain M1S39_15845 PF00501 AMP-binding enzyme M1S39_15850 PF04751 Protein of unknown function (DUF615) M1S39_15855 PF00381 PTS HPr component phosphorylation site M1S39_15860 PF03668 P-loop ATPase protein family M1S39_15865 PF02569 Pantoate-beta-alanine ligase M1S39_15870 PF02548 Ketopantoate hydroxymethyltransferase M1S39_15875 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) M1S39_15880 PF12627 Probable RNA and SrmB- binding site of polymerase A M1S39_15880 PF01743 Poly A polymerase head domain M1S39_15880 PF12626 Polymerase A arginine-rich C-terminus M1S39_15890 PF03819 MazG nucleotide pyrophosphohydrolase domain M1S39_15900 PF02824 TGS domain M1S39_15900 PF13291 ACT domain M1S39_15900 PF04607 Region found in RelA / SpoT proteins M1S39_15905 PF05958 tRNA (Uracil-5-)-methyltransferase M1S39_15915 PF00291 Pyridoxal-phosphate dependent enzyme M1S39_15920 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) M1S39_15920 PF00072 Response regulator receiver domain M1S39_15920 PF01627 Hpt domain M1S39_15920 PF00512 His Kinase A (phospho-acceptor) domain M1S39_15920 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M1S39_15920 PF00672 HAMP domain M1S39_15925 PF00378 Enoyl-CoA hydratase/isomerase M1S39_15930 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase M1S39_15930 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase M1S39_15935 PF01261 Xylose isomerase-like TIM barrel M1S39_15945 PF00106 short chain dehydrogenase M1S39_15950 PF02233 NAD(P) transhydrogenase beta subunit M1S39_15955 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch M1S39_15960 PF01262 Alanine dehydrogenase/PNT, C-terminal domain M1S39_15960 PF05222 Alanine dehydrogenase/PNT, N-terminal domain M1S39_15965 PF00892 EamA-like transporter family M1S39_15975 PF07690 Major Facilitator Superfamily M1S39_15980 PF01207 Dihydrouridine synthase (Dus) M1S39_15990 PF03466 LysR substrate binding domain M1S39_15990 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M1S39_16000 PF00899 ThiF family M1S39_16010 PF00330 Aconitase family (aconitate hydratase) M1S39_16010 PF00694 Aconitase C-terminal domain M1S39_16015 PF01026 TatD related DNase M1S39_16030 PF00009 Elongation factor Tu GTP binding domain M1S39_16030 PF03144 Elongation factor Tu domain 2 M1S39_16030 PF16658 Class II release factor RF3, C-terminal domain M1S39_16050 PF00990 Diguanylate cyclase, GGDEF domain M1S39_16050 PF00563 EAL domain M1S39_16050 PF03707 Bacterial signalling protein N terminal repeat M1S39_16055 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain M1S39_16055 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain M1S39_16060 PF10369 Small subunit of acetolactate synthase M1S39_16065 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain M1S39_16065 PF00205 Thiamine pyrophosphate enzyme, central domain M1S39_16065 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain M1S39_16075 PF00133 tRNA synthetases class I (I, L, M and V) M1S39_16075 PF09334 tRNA synthetases class I (M) M1S39_16075 PF13603 Leucyl-tRNA synthetase, Domain 2 M1S39_16075 PF08264 Anticodon-binding domain of tRNA M1S39_16090 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion M1S39_16095 PF00005 ABC transporter M1S39_16095 PF02687 FtsX-like permease family M1S39_16095 PF12704 MacB-like periplasmic core domain M1S39_16100 PF02321 Outer membrane efflux protein M1S39_16115 PF00929 Exonuclease M1S39_16120 PF03193 RsgA GTPase M1S39_16130 PF00462 Glutaredoxin M1S39_16135 PF02556 Preprotein translocase subunit SecB M1S39_16150 PF02801 Beta-ketoacyl synthase, C-terminal domain M1S39_16150 PF00109 Beta-ketoacyl synthase, N-terminal domain M1S39_16165 PF00109 Beta-ketoacyl synthase, N-terminal domain M1S39_16165 PF02801 Beta-ketoacyl synthase, C-terminal domain M1S39_16175 PF04820 Tryptophan halogenase M1S39_16195 PF00221 Aromatic amino acid lyase M1S39_16210 PF00501 AMP-binding enzyme M1S39_16210 PF13193 AMP-binding enzyme C-terminal domain M1S39_16220 PF00550 Phosphopantetheine attachment site M1S39_16225 PF00550 Phosphopantetheine attachment site M1S39_16240 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal M1S39_16240 PF01926 50S ribosome-binding GTPase M1S39_16245 PF13360 PQQ-like domain M1S39_16255 PF03129 Anticodon binding domain M1S39_16255 PF13393 Histidyl-tRNA synthetase M1S39_16260 PF04551 GcpE protein M1S39_16265 PF13464 Domain of unknown function (DUF4115) M1S39_16275 PF04055 Radical SAM superfamily M1S39_16280 PF00334 Nucleoside diphosphate kinase M1S39_16285 PF04384 Iron-sulphur cluster assembly M1S39_16290 PF01569 PAP2 superfamily M1S39_16295 PF13439 Glycosyltransferase Family 4 M1S39_16295 PF00534 Glycosyl transferases group 1 M1S39_16300 PF17804 Tail specific protease N-terminal domain M1S39_16300 PF11818 C-terminal domain of tail specific protease (DUF3340) M1S39_16300 PF00595 PDZ domain M1S39_16300 PF03572 Peptidase family S41 M1S39_16305 PF00933 Glycosyl hydrolase family 3 N terminal domain M1S39_16315 PF00561 alpha/beta hydrolase fold M1S39_16320 PF00171 Aldehyde dehydrogenase family M1S39_16325 PF00171 Aldehyde dehydrogenase family M1S39_16330 PF01202 Shikimate kinase M1S39_16335 PF02447 GntP family permease M1S39_16340 PF01081 KDPG and KHG aldolase M1S39_16345 PF00920 Dehydratase family M1S39_16350 PF00871 Acetokinase family M1S39_16355 PF01515 Phosphate acetyl/butaryl transferase M1S39_16355 PF07085 DRTGG domain M1S39_16360 PF05681 Fumarate hydratase (Fumerase) M1S39_16360 PF05683 Fumarase C-terminus M1S39_16375 PF06689 ClpX C4-type zinc finger M1S39_16375 PF07724 AAA domain (Cdc48 subfamily) M1S39_16375 PF10431 C-terminal, D2-small domain, of ClpB protein M1S39_16380 PF00574 Clp protease M1S39_16385 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase M1S39_16385 PF05698 Bacterial trigger factor protein (TF) C-terminus M1S39_16385 PF05697 Bacterial trigger factor protein (TF) M1S39_16390 PF07715 TonB-dependent Receptor Plug Domain M1S39_16390 PF00593 TonB dependent receptor M1S39_16395 PF13640 2OG-Fe(II) oxygenase superfamily M1S39_16395 PF18331 PKHD-type hydroxylase C-terminal domain M1S39_16400 PF08502 LeuA allosteric (dimerisation) domain M1S39_16400 PF00682 HMGL-like M1S39_16405 PF00561 alpha/beta hydrolase fold M1S39_16410 PF00561 alpha/beta hydrolase fold M1S39_16410 PF07021 Methionine biosynthesis protein MetW M1S39_16420 PF01725 Ham1 family M1S39_16430 PF02416 mttA/Hcf106 family M1S39_16435 PF02416 mttA/Hcf106 family M1S39_16440 PF00902 Sec-independent protein translocase protein (TatC) M1S39_16460 PF01790 Prolipoprotein diacylglyceryl transferase M1S39_16475 PF00303 Thymidylate synthase M1S39_16480 PF00186 Dihydrofolate reductase M1S39_16490 PF01625 Peptide methionine sulfoxide reductase M1S39_16500 PF01618 MotA/TolQ/ExbB proton channel family M1S39_16510 PF01842 ACT domain M1S39_16510 PF00551 Formyl transferase M1S39_16520 PF00171 Aldehyde dehydrogenase family M1S39_16525 PF00830 Ribosomal L28 family M1S39_16530 PF00471 Ribosomal protein L33 M1S39_16535 PF02254 TrkA-N domain M1S39_16535 PF00999 Sodium/hydrogen exchanger family M1S39_16555 PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) M1S39_16560 PF13361 UvrD-like helicase C-terminal domain M1S39_16560 PF00580 UvrD/REP helicase N-terminal domain M1S39_16575 PF01131 DNA topoisomerase M1S39_16575 PF08272 Topoisomerase I zinc-ribbon-like M1S39_16575 PF01396 Topoisomerase DNA binding C4 zinc finger M1S39_16575 PF01751 Toprim domain M1S39_16585 PF01638 HxlR-like helix-turn-helix M1S39_16590 PF08240 Alcohol dehydrogenase GroES-like domain M1S39_16590 PF00107 Zinc-binding dehydrogenase M1S39_16595 PF04102 SlyX M1S39_16600 PF12848 ABC transporter M1S39_16600 PF00005 ABC transporter M1S39_16600 PF16326 ABC transporter C-terminal domain M1S39_16605 PF01810 LysE type translocator M1S39_16610 PF03279 Bacterial lipid A biosynthesis acyltransferase M1S39_16620 PF00375 Sodium:dicarboxylate symporter family M1S39_16630 PF01118 Semialdehyde dehydrogenase, NAD binding domain M1S39_16630 PF02774 Semialdehyde dehydrogenase, dimerisation domain M1S39_16650 PF01416 tRNA pseudouridine synthase M1S39_16660 PF01176 Translation initiation factor 1A / IF-1 M1S39_16675 PF00180 Isocitrate/isopropylmalate dehydrogenase M1S39_16685 PF00694 Aconitase C-terminal domain M1S39_16690 PF00330 Aconitase family (aconitate hydratase) M1S39_16700 PF03466 LysR substrate binding domain M1S39_16700 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M1S39_16720 PF00293 NUDIX domain M1S39_16725 PF01590 GAF domain M1S39_16725 PF05524 PEP-utilising enzyme, N-terminal M1S39_16725 PF00391 PEP-utilising enzyme, mobile domain M1S39_16725 PF02896 PEP-utilising enzyme, TIM barrel domain M1S39_16730 PF00141 Peroxidase M1S39_16735 PF12706 Beta-lactamase superfamily domain M1S39_16740 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M1S39_16740 PF03466 LysR substrate binding domain M1S39_16750 PF02798 Glutathione S-transferase, N-terminal domain M1S39_16755 PF08279 HTH domain M1S39_16755 PF13280 WYL domain M1S39_16760 PF13419 Haloacid dehalogenase-like hydrolase M1S39_16765 PF00849 RNA pseudouridylate synthase M1S39_16765 PF01479 S4 domain M1S39_16770 PF00575 S1 RNA binding domain M1S39_16770 PF10150 Ribonuclease E/G family M1S39_16770 PF12111 Polyribonucleotide phosphorylase C terminal M1S39_16775 PF00501 AMP-binding enzyme M1S39_16775 PF13193 AMP-binding enzyme C-terminal domain M1S39_16790 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M1S39_16790 PF03466 LysR substrate binding domain M1S39_16795 PF00106 short chain dehydrogenase M1S39_16800 PF04055 Radical SAM superfamily M1S39_16800 PF06969 HemN C-terminal domain M1S39_16810 PF01554 MatE M1S39_16820 PF08028 Acyl-CoA dehydrogenase, C-terminal domain M1S39_16820 PF02771 Acyl-CoA dehydrogenase, N-terminal domain M1S39_16825 PF03109 ABC1 family M1S39_16830 PF01197 Ribosomal protein L31 M1S39_16845 PF02537 CrcB-like protein, Camphor Resistance (CrcB) M1S39_16865 PF03884 DNA gyrase inhibitor YacG M1S39_16870 PF00753 Metallo-beta-lactamase superfamily M1S39_16875 PF00762 Ferrochelatase M1S39_16885 PF01177 Asp/Glu/Hydantoin racemase M1S39_16900 PF01206 Sulfurtransferase TusA M1S39_16905 PF03471 Transporter associated domain M1S39_16905 PF00571 CBS domain M1S39_16910 PF00795 Carbon-nitrogen hydrolase M1S39_16915 PF01588 Putative tRNA binding domain M1S39_16925 PF07963 Prokaryotic N-terminal methylation motif M1S39_16925 PF08334 Type II secretion system (T2SS), protein G M1S39_16930 PF00482 Type II secretion system (T2SS), protein F M1S39_16935 PF00271 Helicase conserved C-terminal domain M1S39_16935 PF17764 3′ DNA-binding domain (3′BD) M1S39_16935 PF18074 Primosomal protein N C-terminal domain M1S39_16935 PF18319 PriA DNA helicase Cys-rich region (CRR) domain M1S39_16935 PF00270 DEAD/DEAH box helicase M1S39_16940 PF00999 Sodium/hydrogen exchanger family M1S39_16940 PF02254 TrkA-N domain M1S39_16945 PF01430 Hsp33 protein M1S39_16955 PF01556 DnaJ C terminal domain M1S39_16955 PF00226 DnaJ domain M1S39_16965 PF01544 CorA-like Mg2+ transporter protein M1S39_16970 PF01138 3' exoribonuclease family, domain 1 M1S39_16970 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain M1S39_16970 PF00013 KH domain M1S39_16970 PF00575 S1 RNA binding domain M1S39_16970 PF03725 3' exoribonuclease family, domain 2 M1S39_16975 PF00312 Ribosomal protein S15 M1S39_16980 PF00144 Beta-lactamase M1S39_16985 PF13538 UvrD-like helicase C-terminal domain M1S39_16990 PF00580 UvrD/REP helicase N-terminal domain M1S39_16990 PF13361 UvrD-like helicase C-terminal domain M1S39_16990 PF12705 PD-(D/E)XK nuclease superfamily M1S39_16995 PF17946 RecC C-terminal domain M1S39_17005 PF03976 Polyphosphate kinase 2 (PPK2) M1S39_17015 PF01209 ubiE/COQ5 methyltransferase family M1S39_17025 PF03109 ABC1 family M1S39_17030 PF01494 FAD binding domain M1S39_17035 PF01502 Phosphoribosyl-AMP cyclohydrolase M1S39_17050 PF04039 Domain related to MnhB subunit of Na+/H+ antiporter M1S39_17050 PF00361 Proton-conducting membrane transporter M1S39_17050 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus M1S39_17050 PF13244 Domain of unknown function (DUF4040) M1S39_17055 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L M1S39_17060 PF00361 Proton-conducting membrane transporter M1S39_17065 PF01899 Na+/H+ ion antiporter subunit M1S39_17070 PF04066 Multiple resistance and pH regulation protein F (MrpF / PhaF) M1S39_17075 PF03334 Na+/H+ antiporter subunit M1S39_17080 PF02033 Ribosome-binding factor A M1S39_17085 PF00009 Elongation factor Tu GTP binding domain M1S39_17085 PF11987 Translation-initiation factor 2 M1S39_17085 PF08364 Bacterial translation initiation factor IF-2 associated region M1S39_17085 PF04760 Translation initiation factor IF-2, N-terminal region M1S39_17090 PF13184 NusA-like KH domain M1S39_17090 PF08529 NusA N-terminal domain M1S39_17090 PF00575 S1 RNA binding domain M1S39_17095 PF02576 RimP N-terminal domain M1S39_17095 PF17384 RimP C-terminal SH3 domain M1S39_17115 PF03840 Preprotein translocase SecG subunit M1S39_17120 PF00121 Triosephosphate isomerase M1S39_17125 PF00437 Type II/IV secretion system protein M1S39_17125 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain M1S39_17130 PF00482 Type II secretion system (T2SS), protein F M1S39_17140 PF06750 Bacterial Peptidase A24 N-terminal domain M1S39_17140 PF01478 Type IV leader peptidase family M1S39_17145 PF01121 Dephospho-CoA kinase M1S39_17155 PF00588 SpoU rRNA Methylase family M1S39_17155 PF08032 RNA 2'-O ribose methyltransferase substrate binding M1S39_17160 PF06865 Pyrimidine/purine nucleoside phosphorylase M1S39_17170 PF02463 RecF/RecN/SMC N terminal domain M1S39_17175 PF02622 Uncharacterized ACR, COG1678 M1S39_17180 PF03652 Holliday junction resolvase M1S39_17185 PF13533 Biotin-lipoyl like M1S39_17210 PF02805 Metal binding domain of Ada M1S39_17210 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain M1S39_17210 PF12833 Helix-turn-helix domain M1S39_17210 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain M1S39_17215 PF01066 CDP-alcohol phosphatidyltransferase M1S39_17225 PF08459 UvrC Helix-hairpin-helix N-terminal M1S39_17225 PF02151 UvrB/uvrC motif M1S39_17225 PF01541 GIY-YIG catalytic domain M1S39_17245 PF00378 Enoyl-CoA hydratase/isomerase M1S39_17245 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain M1S39_17245 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain M1S39_17250 PF02803 Thiolase, C-terminal domain M1S39_17250 PF00108 Thiolase, N-terminal domain M1S39_17270 PF00376 MerR family regulatory protein M1S39_17270 PF09278 MerR, DNA binding M1S39_17280 PF01323 DSBA-like thioredoxin domain M1S39_17295 PF00183 Hsp90 protein M1S39_17295 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M1S39_17310 PF13726 Na+-H+ antiporter family M1S39_17310 PF03553 Na+/H+ antiporter family M1S39_17315 PF00561 alpha/beta hydrolase fold M1S39_17335 PF04997 RNA polymerase Rpb1, domain 1 M1S39_17335 PF00623 RNA polymerase Rpb1, domain 2 M1S39_17335 PF04983 RNA polymerase Rpb1, domain 3 M1S39_17335 PF05000 RNA polymerase Rpb1, domain 4 M1S39_17335 PF04998 RNA polymerase Rpb1, domain 5 M1S39_17340 PF04563 RNA polymerase beta subunit M1S39_17340 PF04561 RNA polymerase Rpb2, domain 2 M1S39_17340 PF04565 RNA polymerase Rpb2, domain 3 M1S39_17340 PF10385 RNA polymerase beta subunit external 1 domain M1S39_17340 PF00562 RNA polymerase Rpb2, domain 6 M1S39_17340 PF04560 RNA polymerase Rpb2, domain 7 M1S39_17345 PF00542 Ribosomal protein L7/L12 C-terminal domain M1S39_17345 PF16320 Ribosomal protein L7/L12 dimerisation domain M1S39_17350 PF00466 Ribosomal protein L10 M1S39_17355 PF00687 Ribosomal protein L1p/L10e family M1S39_17360 PF00298 Ribosomal protein L11, RNA binding domain M1S39_17360 PF03946 Ribosomal protein L11, N-terminal domain M1S39_17365 PF02357 Transcription termination factor nusG M1S39_17365 PF00467 KOW motif M1S39_17370 PF00584 SecE/Sec61-gamma subunits of protein translocation complex M1S39_17380 PF03143 Elongation factor Tu C-terminal domain M1S39_17380 PF03144 Elongation factor Tu domain 2 M1S39_17380 PF00009 Elongation factor Tu GTP binding domain M1S39_17405 PF00425 chorismate binding enzyme M1S39_17405 PF04715 Anthranilate synthase component I, N terminal region M1S39_17410 PF13419 Haloacid dehalogenase-like hydrolase M1S39_17415 PF12401 Protein of unknown function (DUF2662) M1S39_17415 PF00498 FHA domain M1S39_17420 PF03958 Bacterial type II/III secretion system short domain M1S39_17420 PF00263 Bacterial type II and III secretion system protein M1S39_17435 PF00816 H-NS histone family M1S39_17460 PF03900 Porphobilinogen deaminase, C-terminal domain M1S39_17460 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain M1S39_17465 PF04397 LytTr DNA-binding domain M1S39_17465 PF00072 Response regulator receiver domain M1S39_17470 PF07694 5TMR of 5TMR-LYT M1S39_17470 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M1S39_17470 PF06580 Histidine kinase M1S39_17475 PF14698 Argininosuccinate lyase C-terminal M1S39_17475 PF00206 Lyase M1S39_17480 PF04362 Bacterial Fe(2+) trafficking M1S39_17485 PF01895 PhoU domain M1S39_17490 PF02321 Outer membrane efflux protein M1S39_17495 PF00892 EamA-like transporter family M1S39_17510 PF13667 ThiC-associated domain M1S39_17510 PF01964 Radical SAM ThiC family M1S39_17515 PF00293 NUDIX domain M1S39_17520 PF00149 Calcineurin-like phosphoesterase M1S39_17525 PF01258 Prokaryotic dksA/traR C4-type zinc finger M1S39_17530 PF00749 tRNA synthetases class I (E and Q), catalytic domain M1S39_17535 PF01098 Cell cycle protein M1S39_17540 PF02875 Mur ligase family, glutamate ligase domain M1S39_17540 PF08245 Mur ligase middle domain M1S39_17550 PF07664 Ferrous iron transport protein B C terminus M1S39_17550 PF02421 Ferrous iron transport protein B M1S39_17550 PF07670 Nucleoside recognition M1S39_17560 PF00589 Phage integrase family M1S39_17560 PF02899 Phage integrase, N-terminal SAM-like domain M1S39_17565 PF13098 Thioredoxin-like domain M1S39_17565 PF10411 Disulfide bond isomerase protein N-terminus M1S39_17570 PF00742 Homoserine dehydrogenase M1S39_17570 PF01842 ACT domain M1S39_17570 PF03447 Homoserine dehydrogenase, NAD binding domain M1S39_17575 PF00291 Pyridoxal-phosphate dependent enzyme M1S39_17580 PF00768 D-alanyl-D-alanine carboxypeptidase M1S39_17585 PF00072 Response regulator receiver domain M1S39_17585 PF00196 Bacterial regulatory proteins, luxR family M1S39_17590 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M1S39_17590 PF00512 His Kinase A (phospho-acceptor) domain M1S39_17595 PF02954 Bacterial regulatory protein, Fis family M1S39_17595 PF00072 Response regulator receiver domain M1S39_17595 PF00158 Sigma-54 interaction domain M1S39_17600 PF00595 PDZ domain M1S39_17600 PF03572 Peptidase family S41 M1S39_17605 PF06415 BPG-independent PGAM N-terminus (iPGM_N) M1S39_17605 PF01676 Metalloenzyme superfamily M1S39_17610 PF03739 Lipopolysaccharide export system permease LptF/LptG M1S39_17620 PF00883 Cytosol aminopeptidase family, catalytic domain M1S39_17620 PF02789 Cytosol aminopeptidase family, N-terminal domain M1S39_17640 PF00677 Lumazine binding domain M1S39_17650 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region M1S39_17650 PF01872 RibD C-terminal domain M1S39_17655 PF03477 ATP cone domain M1S39_17660 PF00909 Ammonium Transporter Family M1S39_17665 PF00543 Nitrogen regulatory protein P-II M1S39_17685 PF01636 Phosphotransferase enzyme family M1S39_17690 PF04655 Aminoglycoside/hydroxyurea antibiotic resistance kinase M1S39_17710 PF02909 Tetracyclin repressor-like, C-terminal domain M1S39_17710 PF00440 Bacterial regulatory proteins, tetR family M1S39_17715 PF07690 Major Facilitator Superfamily M1S39_17725 PF00916 Sulfate permease family M1S39_17725 PF01740 STAS domain M1S39_17750 PF00665 Integrase core domain M1S39_17760 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I M1S39_17760 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II M1S39_17760 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III M1S39_17760 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain M1S39_17765 PF00809 Pterin binding enzyme M1S39_17780 PF00665 Integrase core domain M1S39_17805 PF02899 Phage integrase, N-terminal SAM-like domain M1S39_17805 PF00589 Phage integrase family M1S39_17885 PF00155 Aminotransferase class I and II M1S39_17885 PF00392 Bacterial regulatory proteins, gntR family M1S39_17895 PF00701 Dihydrodipicolinate synthetase family M1S39_17910 PF03573 outer membrane porin, OprD family M1S39_17915 PF00719 Inorganic pyrophosphatase M1S39_17930 PF13193 AMP-binding enzyme C-terminal domain M1S39_17930 PF00501 AMP-binding enzyme M1S39_17935 PF03989 DNA gyrase C-terminal domain, beta-propeller M1S39_17935 PF00521 DNA gyrase/topoisomerase IV, subunit A M1S39_17940 PF07690 Major Facilitator Superfamily M1S39_17945 PF03458 UPF0126 domain M1S39_17950 PF02810 SEC-C motif M1S39_17955 PF03471 Transporter associated domain M1S39_17955 PF03741 Integral membrane protein TerC family M1S39_17960 PF03641 Possible lysine decarboxylase M1S39_17965 PF07690 Major Facilitator Superfamily M1S39_17975 PF00817 impB/mucB/samB family M1S39_17975 PF11799 impB/mucB/samB family C-terminal domain M1S39_17975 PF11798 IMS family HHH motif M1S39_17995 PF04055 Radical SAM superfamily M1S39_17995 PF08497 Radical SAM N-terminal M1S39_17995 PF11842 Domain of unknown function (DUF3362) M1S39_18015 PF03358 NADPH-dependent FMN reductase M1S39_18025 PF00291 Pyridoxal-phosphate dependent enzyme M1S39_18085 PF01327 Polypeptide deformylase M1S39_18095 PF02481 DNA recombination-mediator protein A M1S39_18095 PF17782 DprA winged helix domain M1S39_18100 PF01300 Telomere recombination M1S39_18105 PF00892 EamA-like transporter family M1S39_18110 PF00440 Bacterial regulatory proteins, tetR family M1S39_18115 PF07690 Major Facilitator Superfamily M1S39_18125 PF00255 Glutathione peroxidase M1S39_18135 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain M1S39_18140 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain M1S39_18140 PF02874 ATP synthase alpha/beta family, beta-barrel domain M1S39_18145 PF00231 ATP synthase M1S39_18150 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain M1S39_18150 PF00306 ATP synthase alpha/beta chain, C terminal domain M1S39_18150 PF02874 ATP synthase alpha/beta family, beta-barrel domain M1S39_18155 PF00213 ATP synthase delta (OSCP) subunit M1S39_18160 PF00430 ATP synthase B/B' CF(0) M1S39_18165 PF00137 ATP synthase subunit C M1S39_18170 PF00119 ATP synthase A chain M1S39_18190 PF00005 ABC transporter M1S39_18195 PF00950 ABC 3 transport family M1S39_18200 PF01810 LysE type translocator M1S39_18205 PF04261 Dyp-type peroxidase family M1S39_18215 PF03949 Malic enzyme, NAD binding domain M1S39_18215 PF00390 Malic enzyme, N-terminal domain M1S39_18220 PF05746 DALR anticodon binding domain M1S39_18220 PF00750 tRNA synthetases class I (R) M1S39_18220 PF03485 Arginyl tRNA synthetase N terminal domain M1S39_18240 PF02678 Pirin M1S39_18240 PF05726 Pirin C-terminal cupin domain M1S39_18250 PF03551 Transcriptional regulator PadR-like family M1S39_18255 PF13427 Domain of unknown function (DUF4111) M1S39_18255 PF01909 Nucleotidyltransferase domain M1S39_18260 PF02540 NAD synthase M1S39_18260 PF00958 GMP synthase C terminal domain M1S39_18260 PF00117 Glutamine amidotransferase class-I M1S39_18265 PF04286 Protein of unknown function (DUF445) M1S39_18270 PF07681 DoxX M1S39_18275 PF09335 SNARE associated Golgi protein M1S39_18290 PF13614 AAA domain M1S39_18300 PF01722 BolA-like protein M1S39_18315 PF01648 4'-phosphopantetheinyl transferase superfamily M1S39_18320 PF12697 Alpha/beta hydrolase family M1S39_18340 PF00109 Beta-ketoacyl synthase, N-terminal domain M1S39_18340 PF02801 Beta-ketoacyl synthase, C-terminal domain M1S39_18340 PF08242 Methyltransferase domain M1S39_18340 PF00550 Phosphopantetheine attachment site M1S39_18340 PF14765 Polyketide synthase dehydratase M1S39_18340 PF00975 Thioesterase domain M1S39_18340 PF16197 Ketoacyl-synthetase C-terminal extension M1S39_18345 PF00441 Acyl-CoA dehydrogenase, C-terminal domain M1S39_18345 PF02770 Acyl-CoA dehydrogenase, middle domain M1S39_18345 PF02771 Acyl-CoA dehydrogenase, N-terminal domain M1S39_18350 PF00501 AMP-binding enzyme M1S39_18355 PF03472 Autoinducer binding domain M1S39_18355 PF00196 Bacterial regulatory proteins, luxR family M1S39_18365 PF00765 Autoinducer synthase M1S39_18370 PF00083 Sugar (and other) transporter M1S39_18370 PF07690 Major Facilitator Superfamily M1S39_18375 PF00378 Enoyl-CoA hydratase/isomerase M1S39_18380 PF00378 Enoyl-CoA hydratase/isomerase M1S39_18385 PF02771 Acyl-CoA dehydrogenase, N-terminal domain M1S39_18385 PF02770 Acyl-CoA dehydrogenase, middle domain M1S39_18385 PF00441 Acyl-CoA dehydrogenase, C-terminal domain M1S39_18390 PF13193 AMP-binding enzyme C-terminal domain M1S39_18390 PF00501 AMP-binding enzyme M1S39_18395 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase M1S39_18395 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase M1S39_18400 PF00171 Aldehyde dehydrogenase family M1S39_18410 PF00324 Amino acid permease M1S39_18415 PF00324 Amino acid permease M1S39_18420 PF01042 Endoribonuclease L-PSP M1S39_18425 PF00842 Alanine racemase, C-terminal domain M1S39_18425 PF01168 Alanine racemase, N-terminal domain M1S39_18430 PF01266 FAD dependent oxidoreductase M1S39_18435 PF01037 Lrp/AsnC ligand binding domain M1S39_18445 PF00593 TonB dependent receptor M1S39_18445 PF07715 TonB-dependent Receptor Plug Domain M1S39_18460 PF00849 RNA pseudouridylate synthase M1S39_18475 PF00440 Bacterial regulatory proteins, tetR family M1S39_18475 PF08361 MAATS-type transcriptional repressor, C-terminal region M1S39_18485 PF02801 Beta-ketoacyl synthase, C-terminal domain M1S39_18485 PF00109 Beta-ketoacyl synthase, N-terminal domain M1S39_18520 PF00330 Aconitase family (aconitate hydratase) M1S39_18520 PF00694 Aconitase C-terminal domain M1S39_18525 PF00285 Citrate synthase, C-terminal domain M1S39_18535 PF00392 Bacterial regulatory proteins, gntR family M1S39_18535 PF07729 FCD domain M1S39_18545 PF00155 Aminotransferase class I and II M1S39_18550 PF09330 D-lactate dehydrogenase, membrane binding M1S39_18550 PF01565 FAD binding domain M1S39_18555 PF01070 FMN-dependent dehydrogenase M1S39_18560 PF00392 Bacterial regulatory proteins, gntR family M1S39_18560 PF07729 FCD domain M1S39_18565 PF02652 L-lactate permease M1S39_18570 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III M1S39_18570 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II M1S39_18570 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I M1S39_18570 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain M1S39_18575 PF16363 GDP-mannose 4,6 dehydratase M1S39_18580 PF00342 Phosphoglucose isomerase M1S39_18585 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain M1S39_18585 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain M1S39_18585 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain M1S39_18590 PF00483 Nucleotidyl transferase M1S39_18595 PF02397 Bacterial sugar transferase M1S39_18600 PF00535 Glycosyl transferase family 2 M1S39_18630 PF08666 SAF domain M1S39_18630 PF03102 NeuB family M1S39_18645 PF02348 Cytidylyltransferase M1S39_18650 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family M1S39_18655 PF02719 Polysaccharide biosynthesis protein M1S39_18660 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain M1S39_18660 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain M1S39_18660 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain M1S39_18665 PF10531 SLBB domain M1S39_18665 PF02563 Polysaccharide biosynthesis/export protein M1S39_18665 PF18412 Outer-membrane lipoprotein Wza C-terminal domain M1S39_18670 PF01451 Low molecular weight phosphotyrosine protein phosphatase M1S39_18675 PF02706 Chain length determinant protein M1S39_18675 PF13807 G-rich domain on putative tyrosine kinase M1S39_18675 PF13614 AAA domain M1S39_18680 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase M1S39_18680 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase M1S39_18685 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase M1S39_18685 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase M1S39_18690 PF03023 Lipid II flippase MurJ M1S39_18695 PF01510 N-acetylmuramoyl-L-alanine amidase M1S39_18700 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain M1S39_18700 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain M1S39_18710 PF05506 Domain of unknown function (DUF756) M1S39_18710 PF04185 Phosphoesterase family M1S39_18720 PF01138 3' exoribonuclease family, domain 1 M1S39_18720 PF03725 3' exoribonuclease family, domain 2 M1S39_18725 PF00487 Fatty acid desaturase M1S39_18730 PF00175 Oxidoreductase NAD-binding domain M1S39_18735 PF00440 Bacterial regulatory proteins, tetR family M1S39_18740 PF08360 QacR-like protein, C-terminal region M1S39_18740 PF00440 Bacterial regulatory proteins, tetR family M1S39_18745 PF01323 DSBA-like thioredoxin domain M1S39_18755 PF13419 Haloacid dehalogenase-like hydrolase M1S39_18760 PF00106 short chain dehydrogenase M1S39_18775 PF00583 Acetyltransferase (GNAT) family M1S39_18775 PF00696 Amino acid kinase family M1S39_18780 PF09084 NMT1/THI5 like M1S39_18785 PF09084 NMT1/THI5 like M1S39_18790 PF00296 Luciferase-like monooxygenase M1S39_18795 PF00528 Binding-protein-dependent transport system inner membrane component M1S39_18800 PF00005 ABC transporter M1S39_18805 PF00440 Bacterial regulatory proteins, tetR family M1S39_18805 PF08362 YcdC-like protein, C-terminal region M1S39_18810 PF01048 Phosphorylase superfamily M1S39_18820 PF06574 FAD synthetase M1S39_18820 PF01687 Riboflavin kinase M1S39_18825 PF06827 Zinc finger found in FPG and IleRS M1S39_18825 PF00133 tRNA synthetases class I (I, L, M and V) M1S39_18825 PF08264 Anticodon-binding domain of tRNA M1S39_18830 PF01252 Signal peptidase (SPase) II M1S39_18835 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase M1S39_18875 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD M1S39_18880 PF07859 alpha/beta hydrolase fold M1S39_18900 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M1S39_18900 PF03466 LysR substrate binding domain M1S39_18905 PF01025 GrpE M1S39_18910 PF00012 Hsp70 protein M1S39_18930 PF13406 Transglycosylase SLT domain M1S39_18935 PF02222 ATP-grasp domain M1S39_18935 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain M1S39_18940 PF00731 AIR carboxylase M1S39_18950 PF01225 Mur ligase family, catalytic domain M1S39_18950 PF02875 Mur ligase family, glutamate ligase domain M1S39_18950 PF08245 Mur ligase middle domain M1S39_18960 PF01569 PAP2 superfamily M1S39_18965 PF03741 Integral membrane protein TerC family M1S39_18975 PF03738 Glutathionylspermidine synthase preATP-grasp M1S39_18980 PF00355 Rieske [2Fe-2S] domain M1S39_18985 PF01979 Amidohydrolase family M1S39_18990 PF00156 Phosphoribosyl transferase domain M1S39_19000 PF10411 Disulfide bond isomerase protein N-terminus M1S39_19000 PF13098 Thioredoxin-like domain M1S39_19005 PF01545 Cation efflux family M1S39_19005 PF16916 Dimerisation domain of Zinc Transporter M1S39_19010 PF02583 Metal-sensitive transcriptional repressor M1S39_19015 PF01926 50S ribosome-binding GTPase M1S39_19015 PF12631 MnmE helical domain M1S39_19015 PF10396 GTP-binding protein TrmE N-terminus M1S39_19020 PF02096 60Kd inner membrane protein M1S39_19020 PF14849 YidC periplasmic domain M1S39_19025 PF01809 Putative membrane protein insertion efficiency factor M1S39_19030 PF00825 Ribonuclease P M1S39_19035 PF00468 Ribosomal protein L34 M1S39_19040 PF13614 AAA domain M1S39_19045 PF17762 HTH domain found in ParB protein M1S39_19045 PF02195 ParB-like nuclease domain M1S39_19060 PF05816 Toxic anion resistance protein (TelA) M1S39_19200 PF18272 single-stranded DNA binding TraI N-terminal subdomain M1S39_19200 PF07057 DNA helicase TraI M1S39_19200 PF18340 DNA relaxase TraI 2B/2B-like domain M1S39_19200 PF08751 TrwC relaxase M1S39_19240 PF02796 Helix-turn-helix domain of resolvase M1S39_19240 PF00239 Resolvase, N terminal domain M1S39_19255 PF01464 Transglycosylase SLT domain M1S39_19290 PF10411 Disulfide bond isomerase protein N-terminus M1S39_19290 PF13098 Thioredoxin-like domain M1S39_19325 PF06834 TraU protein M1S39_19335 PF06986 Type-1V conjugative transfer system mating pair stabilisation M1S39_19350 PF06122 Conjugative relaxosome accessory transposon protein M1S39_19370 PF11799 impB/mucB/samB family C-terminal domain M1S39_19370 PF13438 Domain of unknown function (DUF4113) M1S39_19370 PF00817 impB/mucB/samB family M1S39_19460 PF00565 Staphylococcal nuclease homologue M1S39_19465 PF00816 H-NS histone family