locus-tag class description M1S48_00005 PF00308 Bacterial dnaA protein M1S48_00005 PF08299 Bacterial dnaA protein helix-turn-helix M1S48_00005 PF11638 DnaA N-terminal domain M1S48_00010 PF00712 DNA polymerase III beta subunit, N-terminal domain M1S48_00010 PF02767 DNA polymerase III beta subunit, central domain M1S48_00010 PF02768 DNA polymerase III beta subunit, C-terminal domain M1S48_00015 PF02463 RecF/RecN/SMC N terminal domain M1S48_00020 PF00204 DNA gyrase B M1S48_00020 PF00986 DNA gyrase B subunit, carboxyl terminus M1S48_00020 PF18053 DNA gyrase B subunit insert domain M1S48_00020 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M1S48_00020 PF01751 Toprim domain M1S48_00030 PF09335 SNARE associated Golgi protein M1S48_00035 PF00005 ABC transporter M1S48_00035 PF12848 ABC transporter M1S48_00055 PF01521 Iron-sulphur cluster biosynthesis M1S48_00060 PF00561 alpha/beta hydrolase fold M1S48_00065 PF03702 Anhydro-N-acetylmuramic acid kinase M1S48_00070 PF00579 tRNA synthetases class I (W and Y) M1S48_00110 PF00209 Sodium:neurotransmitter symporter family M1S48_00120 PF01189 16S rRNA methyltransferase RsmB/F M1S48_00120 PF01029 NusB family M1S48_00125 PF02911 Formyl transferase, C-terminal domain M1S48_00125 PF00551 Formyl transferase M1S48_00130 PF00920 Dehydratase family M1S48_00145 PF03466 LysR substrate binding domain M1S48_00145 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M1S48_00150 PF00860 Permease family M1S48_00155 PF00311 Phosphoenolpyruvate carboxylase M1S48_00160 PF08361 MAATS-type transcriptional repressor, C-terminal region M1S48_00160 PF00440 Bacterial regulatory proteins, tetR family M1S48_00165 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion M1S48_00170 PF00873 AcrB/AcrD/AcrF family M1S48_00180 PF01556 DnaJ C terminal domain M1S48_00180 PF00684 DnaJ central domain M1S48_00180 PF00226 DnaJ domain M1S48_00190 PF01113 Dihydrodipicolinate reductase, N-terminus M1S48_00190 PF05173 Dihydrodipicolinate reductase, C-terminus M1S48_00200 PF07690 Major Facilitator Superfamily M1S48_00205 PF00248 Aldo/keto reductase family M1S48_00225 PF00155 Aminotransferase class I and II M1S48_00225 PF00392 Bacterial regulatory proteins, gntR family M1S48_00230 PF00107 Zinc-binding dehydrogenase M1S48_00230 PF08240 Alcohol dehydrogenase GroES-like domain M1S48_00235 PF03352 Methyladenine glycosylase M1S48_00250 PF14815 NUDIX domain M1S48_00250 PF00633 Helix-hairpin-helix motif M1S48_00250 PF10576 Iron-sulfur binding domain of endonuclease III M1S48_00250 PF00730 HhH-GPD superfamily base excision DNA repair protein M1S48_00265 PF07043 Protein of unknown function (DUF1328) M1S48_00270 PF03692 Putative zinc- or iron-chelating domain M1S48_00275 PF07995 Glucose / Sorbosone dehydrogenase M1S48_00280 PF12002 MgsA AAA+ ATPase C terminal M1S48_00280 PF16193 AAA C-terminal domain M1S48_00280 PF00004 ATPase family associated with various cellular activities (AAA) M1S48_00285 PF01226 Formate/nitrite transporter M1S48_00295 PF01259 SAICAR synthetase M1S48_00305 PF00701 Dihydrodipicolinate synthetase family M1S48_00310 PF00857 Isochorismatase family M1S48_00315 PF01758 Sodium Bile acid symporter family M1S48_00320 PF01554 MatE M1S48_00325 PF04463 Protein of unknown function (DUF523) M1S48_00330 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily M1S48_00340 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily M1S48_00345 PF02798 Glutathione S-transferase, N-terminal domain M1S48_00345 PF14497 Glutathione S-transferase, C-terminal domain M1S48_00355 PF00324 Amino acid permease M1S48_00365 PF07683 Cobalamin synthesis protein cobW C-terminal domain M1S48_00365 PF02492 CobW/HypB/UreG, nucleotide-binding domain M1S48_00375 PF07702 UTRA domain M1S48_00375 PF00392 Bacterial regulatory proteins, gntR family M1S48_00380 PF05962 HutD M1S48_00385 PF01175 Urocanase Rossmann-like domain M1S48_00385 PF17392 Urocanase C-terminal domain M1S48_00385 PF17391 Urocanase N-terminal domain M1S48_00390 PF00221 Aromatic amino acid lyase M1S48_00395 PF00324 Amino acid permease M1S48_00400 PF01979 Amidohydrolase family M1S48_00405 PF00491 Arginase family M1S48_00420 PF01177 Asp/Glu/Hydantoin racemase M1S48_00425 PF01380 SIS domain M1S48_00430 PF00132 Bacterial transferase hexapeptide (six repeats) M1S48_00430 PF14602 Hexapeptide repeat of succinyl-transferase M1S48_00430 PF12804 MobA-like NTP transferase domain M1S48_00435 PF04608 Phosphatidylglycerophosphatase A M1S48_00440 PF02769 AIR synthase related protein, C-terminal domain M1S48_00440 PF00586 AIR synthase related protein, N-terminal domain M1S48_00445 PF01029 NusB family M1S48_00450 PF00885 6,7-dimethyl-8-ribityllumazine synthase M1S48_00455 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase M1S48_00455 PF00925 GTP cyclohydrolase II M1S48_00480 PF02580 D-Tyr-tRNA(Tyr) deacylase M1S48_00485 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family M1S48_00485 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain M1S48_00490 PF00581 Rhodanese-like domain M1S48_00495 PF02666 Phosphatidylserine decarboxylase M1S48_00500 PF03069 Acetamidase/Formamidase family M1S48_00520 PF11808 Phosphate regulon sensor protein PhoR M1S48_00520 PF00989 PAS fold M1S48_00520 PF00512 His Kinase A (phospho-acceptor) domain M1S48_00520 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M1S48_00525 PF00486 Transcriptional regulatory protein, C terminal M1S48_00525 PF00072 Response regulator receiver domain M1S48_00535 PF00106 short chain dehydrogenase M1S48_00540 PF01554 MatE M1S48_00545 PF00155 Aminotransferase class I and II M1S48_00550 PF04286 Protein of unknown function (DUF445) M1S48_00565 PF04262 Glutamate-cysteine ligase M1S48_00570 PF02600 Disulfide bond formation protein DsbB M1S48_00575 PF13296 Putative type VI secretion system Rhs element Vgr M1S48_00575 PF10106 Uncharacterized protein conserved in bacteria (DUF2345) M1S48_00575 PF04717 Type VI secretion system, phage-baseplate injector M1S48_00580 PF01476 LysM domain M1S48_00580 PF00877 NlpC/P60 family M1S48_00595 PF05728 Uncharacterised protein family (UPF0227) M1S48_00600 PF01751 Toprim domain M1S48_00600 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M1S48_00600 PF00986 DNA gyrase B subunit, carboxyl terminus M1S48_00600 PF00204 DNA gyrase B M1S48_00605 PF00106 short chain dehydrogenase M1S48_00610 PF04115 Ureidoglycolate lyase M1S48_00615 PF03561 Allantoicase repeat M1S48_00620 PF01494 FAD binding domain M1S48_00630 PF00860 Permease family M1S48_00635 PF00576 HIUase/Transthyretin family M1S48_00665 PF11412 Disulphide bond corrector protein DsbC M1S48_00665 PF02683 Cytochrome C biogenesis protein transmembrane region M1S48_00670 PF00990 Diguanylate cyclase, GGDEF domain M1S48_00670 PF07694 5TMR of 5TMR-LYT M1S48_00675 PF07859 alpha/beta hydrolase fold M1S48_00685 PF03960 ArsC family M1S48_00690 PF03372 Endonuclease/Exonuclease/phosphatase family M1S48_00695 PF00156 Phosphoribosyl transferase domain M1S48_00700 PF07715 TonB-dependent Receptor Plug Domain M1S48_00700 PF00593 TonB dependent receptor M1S48_00710 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain M1S48_00710 PF02951 Prokaryotic glutathione synthetase, N-terminal domain M1S48_00715 PF04101 Glycosyltransferase family 28 C-terminal domain M1S48_00715 PF03033 Glycosyltransferase family 28 N-terminal domain M1S48_00720 PF01225 Mur ligase family, catalytic domain M1S48_00720 PF08245 Mur ligase middle domain M1S48_00720 PF02875 Mur ligase family, glutamate ligase domain M1S48_00725 PF01820 D-ala D-ala ligase N-terminus M1S48_00725 PF07478 D-ala D-ala ligase C-terminus M1S48_00730 PF03799 Cell division protein FtsQ M1S48_00730 PF08478 POTRA domain, FtsQ-type M1S48_00735 PF02491 SHS2 domain inserted in FTSA M1S48_00740 PF12327 FtsZ family, C-terminal domain M1S48_00740 PF00091 Tubulin/FtsZ family, GTPase domain M1S48_00745 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase M1S48_00755 PF01551 Peptidase family M23 M1S48_00760 PF17831 Pyruvate dehydrogenase E1 component middle domain M1S48_00760 PF00456 Transketolase, thiamine diphosphate binding domain M1S48_00765 PF00364 Biotin-requiring enzyme M1S48_00765 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) M1S48_00765 PF02817 e3 binding domain M1S48_00775 PF01169 Uncharacterized protein family UPF0016 M1S48_00780 PF07715 TonB-dependent Receptor Plug Domain M1S48_00780 PF00593 TonB dependent receptor M1S48_00785 PF01613 Flavin reductase like domain M1S48_00785 PF00258 Flavodoxin M1S48_00790 PF03692 Putative zinc- or iron-chelating domain M1S48_00795 PF00571 CBS domain M1S48_00795 PF00478 IMP dehydrogenase / GMP reductase domain M1S48_00800 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain M1S48_00800 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III M1S48_00800 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II M1S48_00800 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I M1S48_00805 PF01243 Pyridoxamine 5'-phosphate oxidase M1S48_00805 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region M1S48_00810 PF17768 RecJ OB domain M1S48_00810 PF02272 DHHA1 domain M1S48_00810 PF01368 DHH family M1S48_00830 PF00724 NADH:flavin oxidoreductase / NADH oxidase family M1S48_00835 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) M1S48_00840 PF04452 RNA methyltransferase M1S48_00845 PF00924 Mechanosensitive ion channel M1S48_00855 PF00501 AMP-binding enzyme M1S48_00855 PF13193 AMP-binding enzyme C-terminal domain M1S48_00855 PF16177 Acetyl-coenzyme A synthetase N-terminus M1S48_00860 PF00857 Isochorismatase family M1S48_00865 PF01037 Lrp/AsnC ligand binding domain M1S48_00870 PF00872 Transposase, Mutator family M1S48_00875 PF00296 Luciferase-like monooxygenase M1S48_00880 PF03358 NADPH-dependent FMN reductase M1S48_00885 PF00072 Response regulator receiver domain M1S48_00885 PF00196 Bacterial regulatory proteins, luxR family M1S48_00895 PF01627 Hpt domain M1S48_00895 PF00512 His Kinase A (phospho-acceptor) domain M1S48_00895 PF00672 HAMP domain M1S48_00895 PF00072 Response regulator receiver domain M1S48_00895 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M1S48_00900 PF04341 Protein of unknown function, DUF485 M1S48_00905 PF00474 Sodium:solute symporter family M1S48_00915 PF02028 BCCT, betaine/carnitine/choline family transporter M1S48_00925 PF00990 Diguanylate cyclase, GGDEF domain M1S48_00935 PF17760 UvrA interaction domain M1S48_00935 PF17755 UvrA DNA-binding domain M1S48_00935 PF00005 ABC transporter M1S48_00940 PF00440 Bacterial regulatory proteins, tetR family M1S48_00940 PF16925 Tetracyclin repressor-like, C-terminal domain M1S48_00945 PF08240 Alcohol dehydrogenase GroES-like domain M1S48_00945 PF00107 Zinc-binding dehydrogenase M1S48_00955 PF06942 GlpM protein M1S48_00960 PF02581 Thiamine monophosphate synthase M1S48_00960 PF03070 TENA/THI-4/PQQC family M1S48_00960 PF08543 Phosphomethylpyrimidine kinase M1S48_00970 PF07690 Major Facilitator Superfamily M1S48_00975 PF00436 Single-strand binding protein family M1S48_00985 PF03591 AzlC protein M1S48_00995 PF00324 Amino acid permease M1S48_01000 PF00392 Bacterial regulatory proteins, gntR family M1S48_01000 PF00155 Aminotransferase class I and II M1S48_01005 PF00202 Aminotransferase class-III M1S48_01010 PF00171 Aldehyde dehydrogenase family M1S48_01015 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M1S48_01020 PF00857 Isochorismatase family M1S48_01025 PF02678 Pirin M1S48_01025 PF05726 Pirin C-terminal cupin domain M1S48_01030 PF01593 Flavin containing amine oxidoreductase M1S48_01050 PF07690 Major Facilitator Superfamily M1S48_01055 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M1S48_01055 PF03466 LysR substrate binding domain M1S48_01075 PF00248 Aldo/keto reductase family M1S48_01080 PF02311 AraC-like ligand binding domain M1S48_01080 PF12833 Helix-turn-helix domain M1S48_01110 PF01638 HxlR-like helix-turn-helix M1S48_01115 PF02525 Flavodoxin-like fold M1S48_01135 PF02705 K+ potassium transporter M1S48_01160 PF00230 Major intrinsic protein M1S48_01175 PF00977 Histidine biosynthesis protein M1S48_01180 PF01636 Phosphotransferase enzyme family M1S48_01195 PF03992 Antibiotic biosynthesis monooxygenase M1S48_01210 PF00977 Histidine biosynthesis protein M1S48_01225 PF00117 Glutamine amidotransferase class-I M1S48_01230 PF00475 Imidazoleglycerol-phosphate dehydratase M1S48_01250 PF00583 Acetyltransferase (GNAT) family M1S48_01255 PF02550 Acetyl-CoA hydrolase/transferase N-terminal domain M1S48_01255 PF13336 Acetyl-CoA hydrolase/transferase C-terminal domain M1S48_01265 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M1S48_01265 PF00672 HAMP domain M1S48_01265 PF00512 His Kinase A (phospho-acceptor) domain M1S48_01270 PF00486 Transcriptional regulatory protein, C terminal M1S48_01270 PF00072 Response regulator receiver domain M1S48_01275 PF16921 Tex protein YqgF-like domain M1S48_01275 PF00575 S1 RNA binding domain M1S48_01275 PF17674 HHH domain M1S48_01275 PF09371 Tex-like protein N-terminal domain M1S48_01280 PF00916 Sulfate permease family M1S48_01280 PF01740 STAS domain M1S48_01285 PF00106 short chain dehydrogenase M1S48_01290 PF01053 Cys/Met metabolism PLP-dependent enzyme M1S48_01295 PF12848 ABC transporter M1S48_01295 PF00005 ABC transporter M1S48_01320 PF04191 Phospholipid methyltransferase M1S48_01340 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion M1S48_01340 PF00529 HlyD membrane-fusion protein of T1SS M1S48_01345 PF00873 AcrB/AcrD/AcrF family M1S48_01350 PF01545 Cation efflux family M1S48_01380 PF00324 Amino acid permease M1S48_01395 PF00749 tRNA synthetases class I (E and Q), catalytic domain M1S48_01410 PF01795 MraW methylase family M1S48_01420 PF00905 Penicillin binding protein transpeptidase domain M1S48_01420 PF03717 Penicillin-binding Protein dimerisation domain M1S48_01425 PF02875 Mur ligase family, glutamate ligase domain M1S48_01425 PF08245 Mur ligase middle domain M1S48_01425 PF01225 Mur ligase family, catalytic domain M1S48_01430 PF01225 Mur ligase family, catalytic domain M1S48_01430 PF02875 Mur ligase family, glutamate ligase domain M1S48_01430 PF08245 Mur ligase middle domain M1S48_01435 PF00953 Glycosyl transferase family 4 M1S48_01445 PF13847 Methyltransferase domain M1S48_01450 PF17092 Penicillin-binding protein OB-like domain M1S48_01450 PF00912 Transglycosylase M1S48_01450 PF00905 Penicillin binding protein transpeptidase domain M1S48_01455 PF11104 Type IV pilus assembly protein PilM; M1S48_01460 PF05137 Fimbrial assembly protein (PilN) M1S48_01465 PF04350 Pilus assembly protein, PilO M1S48_01475 PF00263 Bacterial type II and III secretion system protein M1S48_01475 PF03958 Bacterial type II/III secretion system short domain M1S48_01475 PF07660 Secretin and TonB N terminus short domain M1S48_01475 PF11741 AMIN domain M1S48_01480 PF01202 Shikimate kinase M1S48_01485 PF01761 3-dehydroquinate synthase M1S48_01495 PF00310 Glutamine amidotransferases class-II M1S48_01495 PF04898 Glutamate synthase central domain M1S48_01495 PF01645 Conserved region in glutamate synthase M1S48_01495 PF01493 GXGXG motif M1S48_01500 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster M1S48_01500 PF07992 Pyridine nucleotide-disulphide oxidoreductase M1S48_01510 PF04011 LemA family M1S48_01515 PF04536 TPM domain M1S48_01525 PF07963 Prokaryotic N-terminal methylation motif M1S48_01525 PF00114 Pilin (bacterial filament) M1S48_01535 PF15864 Protein glycosylation ligase M1S48_01535 PF04932 O-Antigen ligase M1S48_01535 PF11846 Virulence factor membrane-bound polymerase, C-terminal M1S48_01540 PF00210 Ferritin-like domain M1S48_01545 PF04324 BFD-like [2Fe-2S] binding domain M1S48_01550 PF01042 Endoribonuclease L-PSP M1S48_01555 PF02824 TGS domain M1S48_01555 PF04607 Region found in RelA / SpoT proteins M1S48_01555 PF13291 ACT domain M1S48_01565 PF01192 RNA polymerase Rpb6 M1S48_01570 PF00625 Guanylate kinase M1S48_01575 PF02401 LytB protein M1S48_01615 PF00886 Ribosomal protein S16 M1S48_01620 PF01782 RimM N-terminal domain M1S48_01620 PF05239 PRC-barrel domain M1S48_01625 PF01746 tRNA (Guanine-1)-methyltransferase M1S48_01630 PF01245 Ribosomal protein L19 M1S48_01635 PF00561 alpha/beta hydrolase fold M1S48_01640 PF03280 Proteobacterial lipase chaperone protein M1S48_01645 PF01509 TruB family pseudouridylate synthase (N terminal domain) M1S48_01645 PF16198 tRNA pseudouridylate synthase B C-terminal domain M1S48_01645 PF09157 Pseudouridine synthase II TruB, C-terminal M1S48_01650 PF01925 Sulfite exporter TauE/SafE M1S48_01660 PF00892 EamA-like transporter family M1S48_01665 PF00892 EamA-like transporter family M1S48_01670 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain M1S48_01670 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain M1S48_01675 PF01565 FAD binding domain M1S48_01675 PF02913 FAD linked oxidases, C-terminal domain M1S48_01685 PF03992 Antibiotic biosynthesis monooxygenase M1S48_01690 PF02525 Flavodoxin-like fold M1S48_01700 PF07690 Major Facilitator Superfamily M1S48_01705 PF12805 FUSC-like inner membrane protein yccS M1S48_01710 PF00080 Copper/zinc superoxide dismutase (SODC) M1S48_01715 PF01594 AI-2E family transporter M1S48_01720 PF13614 AAA domain M1S48_01750 PF00324 Amino acid permease M1S48_01755 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase M1S48_01755 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain M1S48_01760 PF00202 Aminotransferase class-III M1S48_01765 PF04958 Arginine N-succinyltransferase beta subunit M1S48_01770 PF00171 Aldehyde dehydrogenase family M1S48_01775 PF04996 Succinylarginine dihydrolase M1S48_01780 PF04952 Succinylglutamate desuccinylase / Aspartoacylase family M1S48_01795 PF05922 Peptidase inhibitor I9 M1S48_01795 PF00082 Subtilase family M1S48_01810 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M1S48_01810 PF03466 LysR substrate binding domain M1S48_01815 PF00892 EamA-like transporter family M1S48_01825 PF02092 Glycyl-tRNA synthetase beta subunit M1S48_01825 PF05746 DALR anticodon binding domain M1S48_01830 PF02091 Glycyl-tRNA synthetase alpha subunit M1S48_01855 PF00571 CBS domain M1S48_01860 PF04024 PspC domain M1S48_01870 PF02770 Acyl-CoA dehydrogenase, middle domain M1S48_01870 PF02771 Acyl-CoA dehydrogenase, N-terminal domain M1S48_01870 PF12806 Acetyl-CoA dehydrogenase C-terminal like M1S48_01870 PF00441 Acyl-CoA dehydrogenase, C-terminal domain M1S48_01880 PF08501 Shikimate dehydrogenase substrate binding domain M1S48_01880 PF18317 Shikimate 5'-dehydrogenase C-terminal domain M1S48_01880 PF01488 Shikimate / quinate 5-dehydrogenase M1S48_01885 PF01218 Coproporphyrinogen III oxidase M1S48_01890 PF00925 GTP cyclohydrolase II M1S48_01895 PF13292 1-deoxy-D-xylulose-5-phosphate synthase M1S48_01895 PF02779 Transketolase, pyrimidine binding domain M1S48_01895 PF02780 Transketolase, C-terminal domain M1S48_01900 PF00459 Inositol monophosphatase family M1S48_01905 PF00271 Helicase conserved C-terminal domain M1S48_01905 PF00270 DEAD/DEAH box helicase M1S48_01905 PF03880 DbpA RNA binding domain M1S48_01905 PF12343 Cold shock protein DEAD box A M1S48_01915 PF00005 ABC transporter M1S48_01920 PF02405 Permease MlaE M1S48_01930 PF05494 MlaC protein M1S48_01940 PF01544 CorA-like Mg2+ transporter protein M1S48_01945 PF03641 Possible lysine decarboxylase M1S48_01950 PF00293 NUDIX domain M1S48_01955 PF00156 Phosphoribosyl transferase domain M1S48_01960 PF00270 DEAD/DEAH box helicase M1S48_01960 PF17191 RecG wedge domain M1S48_01960 PF00271 Helicase conserved C-terminal domain M1S48_01975 PF01553 Acyltransferase M1S48_01985 PF00375 Sodium:dicarboxylate symporter family M1S48_01995 PF01926 50S ribosome-binding GTPase M1S48_02000 PF02082 Transcriptional regulator M1S48_02005 PF00970 Oxidoreductase FAD-binding domain M1S48_02005 PF00042 Globin M1S48_02005 PF00175 Oxidoreductase NAD-binding domain M1S48_02010 PF05872 Bacterial protein of unknown function (DUF853) M1S48_02015 PF01053 Cys/Met metabolism PLP-dependent enzyme M1S48_02020 PF00117 Glutamine amidotransferase class-I M1S48_02025 PF00338 Ribosomal protein S10p/S20e M1S48_02030 PF00297 Ribosomal protein L3 M1S48_02035 PF00573 Ribosomal protein L4/L1 family M1S48_02040 PF00276 Ribosomal protein L23 M1S48_02045 PF00181 Ribosomal Proteins L2, RNA binding domain M1S48_02045 PF03947 Ribosomal Proteins L2, C-terminal domain M1S48_02050 PF00203 Ribosomal protein S19 M1S48_02055 PF00237 Ribosomal protein L22p/L17e M1S48_02065 PF00252 Ribosomal protein L16p/L10e M1S48_02070 PF00831 Ribosomal L29 protein M1S48_02075 PF00366 Ribosomal protein S17 M1S48_02080 PF00238 Ribosomal protein L14p/L23e M1S48_02085 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 M1S48_02085 PF00467 KOW motif M1S48_02090 PF00673 ribosomal L5P family C-terminus M1S48_02090 PF00281 Ribosomal protein L5 M1S48_02095 PF00253 Ribosomal protein S14p/S29e M1S48_02100 PF00410 Ribosomal protein S8 M1S48_02105 PF00347 Ribosomal protein L6 M1S48_02110 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast M1S48_02115 PF00333 Ribosomal protein S5, N-terminal domain M1S48_02115 PF03719 Ribosomal protein S5, C-terminal domain M1S48_02120 PF00327 Ribosomal protein L30p/L7e M1S48_02125 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A M1S48_02130 PF00344 SecY translocase M1S48_02135 PF00444 Ribosomal protein L36 M1S48_02140 PF00416 Ribosomal protein S13/S18 M1S48_02145 PF00411 Ribosomal protein S11 M1S48_02150 PF01479 S4 domain M1S48_02150 PF00163 Ribosomal protein S4/S9 N-terminal domain M1S48_02155 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain M1S48_02155 PF01000 RNA polymerase Rpb3/RpoA insert domain M1S48_02155 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain M1S48_02160 PF01196 Ribosomal protein L17 M1S48_02165 PF00743 Flavin-binding monooxygenase-like M1S48_02170 PF02770 Acyl-CoA dehydrogenase, middle domain M1S48_02170 PF02771 Acyl-CoA dehydrogenase, N-terminal domain M1S48_02170 PF00441 Acyl-CoA dehydrogenase, C-terminal domain M1S48_02175 PF03937 Flavinator of succinate dehydrogenase M1S48_02205 PF09526 Probable metal-binding protein (DUF2387) M1S48_02210 PF01432 Peptidase family M3 M1S48_02215 PF17876 Cold shock domain M1S48_02215 PF08461 Ribonuclease R winged-helix domain M1S48_02215 PF08206 Ribonuclease B OB domain M1S48_02215 PF00773 RNB domain M1S48_02215 PF00575 S1 RNA binding domain M1S48_02260 PF01557 Fumarylacetoacetate (FAA) hydrolase family M1S48_02265 PF12833 Helix-turn-helix domain M1S48_02270 PF00892 EamA-like transporter family M1S48_02275 PF03631 Virulence factor BrkB M1S48_02280 PF03358 NADPH-dependent FMN reductase M1S48_02305 PF02130 Uncharacterized protein family UPF0054 M1S48_02310 PF02562 PhoH-like protein M1S48_02315 PF01938 TRAM domain M1S48_02315 PF04055 Radical SAM superfamily M1S48_02315 PF00919 Uncharacterized protein family UPF0004 M1S48_02320 PF01551 Peptidase family M23 M1S48_02320 PF10145 Phage-related minor tail protein M1S48_02320 PF01464 Transglycosylase SLT domain M1S48_02330 PF00056 lactate/malate dehydrogenase, NAD binding domain M1S48_02330 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain M1S48_02350 PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ M1S48_02355 PF01066 CDP-alcohol phosphatidyltransferase M1S48_02400 PF00441 Acyl-CoA dehydrogenase, C-terminal domain M1S48_02400 PF02770 Acyl-CoA dehydrogenase, middle domain M1S48_02400 PF02771 Acyl-CoA dehydrogenase, N-terminal domain M1S48_02405 PF17932 Tetracyclin repressor-like, C-terminal domain M1S48_02405 PF00440 Bacterial regulatory proteins, tetR family M1S48_02420 PF01039 Carboxyl transferase domain M1S48_02425 PF02771 Acyl-CoA dehydrogenase, N-terminal domain M1S48_02425 PF00441 Acyl-CoA dehydrogenase, C-terminal domain M1S48_02425 PF02770 Acyl-CoA dehydrogenase, middle domain M1S48_02435 PF02785 Biotin carboxylase C-terminal domain M1S48_02435 PF00289 Biotin carboxylase, N-terminal domain M1S48_02435 PF00364 Biotin-requiring enzyme M1S48_02435 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain M1S48_02445 PF04386 Stringent starvation protein B M1S48_02450 PF00043 Glutathione S-transferase, C-terminal domain M1S48_02450 PF13417 Glutathione S-transferase, N-terminal domain M1S48_02455 PF00380 Ribosomal protein S9/S16 M1S48_02460 PF00572 Ribosomal protein L13 M1S48_02465 PF04166 Pyridoxal phosphate biosynthetic protein PdxA M1S48_02470 PF00398 Ribosomal RNA adenine dimethylase M1S48_02475 PF00149 Calcineurin-like phosphoesterase M1S48_02495 PF16360 GTP-binding GTPase Middle Region M1S48_02495 PF13167 GTP-binding GTPase N-terminal M1S48_02495 PF01926 50S ribosome-binding GTPase M1S48_02505 PF13091 PLD-like domain M1S48_02510 PF00149 Calcineurin-like phosphoesterase M1S48_02510 PF10518 TAT (twin-arginine translocation) pathway signal sequence M1S48_02515 PF00691 OmpA family M1S48_02515 PF01389 OmpA-like transmembrane domain M1S48_02520 PF17152 Periplasmic sensor domain M1S48_02520 PF00990 Diguanylate cyclase, GGDEF domain M1S48_02555 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain M1S48_02555 PF07992 Pyridine nucleotide-disulphide oxidoreductase M1S48_02565 PF00753 Metallo-beta-lactamase superfamily M1S48_02565 PF04273 Putative phosphatase (DUF442) M1S48_02570 PF00561 alpha/beta hydrolase fold M1S48_02575 PF00085 Thioredoxin M1S48_02580 PF03061 Thioesterase superfamily M1S48_02590 PF04461 Protein of unknown function (DUF520) M1S48_02600 PF05430 S-adenosyl-L-methionine-dependent methyltransferase M1S48_02600 PF01266 FAD dependent oxidoreductase M1S48_02610 PF03795 YCII-related domain M1S48_02615 PF04279 Intracellular septation protein A M1S48_02620 PF02811 PHP domain M1S48_02625 PF01062 Bestrophin, RFP-TM, chloride channel M1S48_02630 PF04002 RadC-like JAB domain M1S48_02635 PF04127 DNA / pantothenate metabolism flavoprotein M1S48_02635 PF02441 Flavoprotein M1S48_02640 PF07549 SecD/SecF GG Motif M1S48_02640 PF02355 Protein export membrane protein M1S48_02645 PF07549 SecD/SecF GG Motif M1S48_02645 PF13721 SecD export protein N-terminal TM region M1S48_02645 PF02355 Protein export membrane protein M1S48_02650 PF02699 Preprotein translocase subunit M1S48_02655 PF01702 Queuine tRNA-ribosyltransferase M1S48_02670 PF02547 Queuosine biosynthesis protein M1S48_02700 PF00436 Single-strand binding protein family M1S48_02765 PF00717 Peptidase S24-like M1S48_02770 PF11798 IMS family HHH motif M1S48_02770 PF11799 impB/mucB/samB family C-terminal domain M1S48_02770 PF00817 impB/mucB/samB family M1S48_02770 PF13438 Domain of unknown function (DUF4113) M1S48_02855 PF01510 N-acetylmuramoyl-L-alanine amidase M1S48_02855 PF01471 Putative peptidoglycan binding domain M1S48_02910 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M1S48_02910 PF00512 His Kinase A (phospho-acceptor) domain M1S48_02910 PF07689 KaiB domain M1S48_02915 PF03710 Glutamate-ammonia ligase adenylyltransferase M1S48_02915 PF08335 GlnD PII-uridylyltransferase M1S48_02920 PF01063 Amino-transferase class IV M1S48_02935 PF01522 Polysaccharide deacetylase M1S48_02940 PF00535 Glycosyl transferase family 2 M1S48_02945 PF13439 Glycosyltransferase Family 4 M1S48_02945 PF00534 Glycosyl transferases group 1 M1S48_02970 PF11380 Stealth protein CR2, conserved region 2 M1S48_02970 PF17101 Stealth protein CR1, conserved region 1 M1S48_02970 PF17102 Stealth protein CR3, conserved region 3 M1S48_02975 PF01336 OB-fold nucleic acid binding domain M1S48_02975 PF00152 tRNA synthetases class II (D, K and N) M1S48_02975 PF02938 GAD domain M1S48_02985 PF00593 TonB dependent receptor M1S48_02985 PF07715 TonB-dependent Receptor Plug Domain M1S48_03005 PF06146 Phosphate-starvation-inducible E M1S48_03010 PF00043 Glutathione S-transferase, C-terminal domain M1S48_03010 PF02798 Glutathione S-transferase, N-terminal domain M1S48_03015 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M1S48_03015 PF03466 LysR substrate binding domain M1S48_03020 PF02771 Acyl-CoA dehydrogenase, N-terminal domain M1S48_03020 PF12806 Acetyl-CoA dehydrogenase C-terminal like M1S48_03020 PF00441 Acyl-CoA dehydrogenase, C-terminal domain M1S48_03020 PF02770 Acyl-CoA dehydrogenase, middle domain M1S48_03025 PF02770 Acyl-CoA dehydrogenase, middle domain M1S48_03025 PF02771 Acyl-CoA dehydrogenase, N-terminal domain M1S48_03025 PF12806 Acetyl-CoA dehydrogenase C-terminal like M1S48_03025 PF00441 Acyl-CoA dehydrogenase, C-terminal domain M1S48_03035 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M1S48_03035 PF00672 HAMP domain M1S48_03035 PF00512 His Kinase A (phospho-acceptor) domain M1S48_03040 PF00072 Response regulator receiver domain M1S48_03040 PF00486 Transcriptional regulatory protein, C terminal M1S48_03045 PF02696 Uncharacterized ACR, YdiU/UPF0061 family M1S48_03065 PF01923 Cobalamin adenosyltransferase M1S48_03070 PF07715 TonB-dependent Receptor Plug Domain M1S48_03070 PF00593 TonB dependent receptor M1S48_03075 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase M1S48_03080 PF00291 Pyridoxal-phosphate dependent enzyme M1S48_03105 PF00290 Tryptophan synthase alpha chain M1S48_03110 PF01039 Carboxyl transferase domain M1S48_03115 PF02875 Mur ligase family, glutamate ligase domain M1S48_03115 PF08245 Mur ligase middle domain M1S48_03130 PF00753 Metallo-beta-lactamase superfamily M1S48_03135 PF10417 C-terminal domain of 1-Cys peroxiredoxin M1S48_03135 PF00578 AhpC/TSA family M1S48_03140 PF01043 SecA preprotein cross-linking domain M1S48_03140 PF07517 SecA DEAD-like domain M1S48_03140 PF07516 SecA Wing and Scaffold domain M1S48_03140 PF02810 SEC-C motif M1S48_03150 PF00083 Sugar (and other) transporter M1S48_03150 PF07690 Major Facilitator Superfamily M1S48_03155 PF03006 Haemolysin-III related M1S48_03180 PF00378 Enoyl-CoA hydratase/isomerase M1S48_03180 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain M1S48_03180 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain M1S48_03185 PF02803 Thiolase, C-terminal domain M1S48_03185 PF00108 Thiolase, N-terminal domain M1S48_03190 PF12833 Helix-turn-helix domain M1S48_03190 PF02311 AraC-like ligand binding domain M1S48_03195 PF02515 CoA-transferase family III M1S48_03200 PF04966 Carbohydrate-selective porin, OprB family M1S48_03205 PF01011 PQQ enzyme repeat M1S48_03210 PF01077 Nitrite and sulphite reductase 4Fe-4S domain M1S48_03210 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain M1S48_03220 PF00893 Small Multidrug Resistance protein M1S48_03230 PF00108 Thiolase, N-terminal domain M1S48_03230 PF02803 Thiolase, C-terminal domain M1S48_03240 PF13505 Outer membrane protein beta-barrel domain M1S48_03240 PF00691 OmpA family M1S48_03250 PF01139 tRNA-splicing ligase RtcB M1S48_03255 PF00324 Amino acid permease M1S48_03260 PF05175 Methyltransferase small domain M1S48_03260 PF08468 Methyltransferase small domain N-terminal M1S48_03265 PF00860 Permease family M1S48_03270 PF00679 Elongation factor G C-terminus M1S48_03270 PF00009 Elongation factor Tu GTP binding domain M1S48_03270 PF03144 Elongation factor Tu domain 2 M1S48_03275 PF01741 Large-conductance mechanosensitive channel, MscL M1S48_03290 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain M1S48_03290 PF06827 Zinc finger found in FPG and IleRS M1S48_03290 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain M1S48_03295 PF02245 Methylpurine-DNA glycosylase (MPG) M1S48_03315 PF00724 NADH:flavin oxidoreductase / NADH oxidase family M1S48_03330 PF10411 Disulfide bond isomerase protein N-terminus M1S48_03330 PF13098 Thioredoxin-like domain M1S48_03335 PF01571 Aminomethyltransferase folate-binding domain M1S48_03345 PF04343 Protein of unknown function, DUF488 M1S48_03350 PF03831 PhnA domain M1S48_03350 PF08274 PhnA Zinc-Ribbon M1S48_03355 PF07411 Domain of unknown function (DUF1508) M1S48_03360 PF04073 Aminoacyl-tRNA editing domain M1S48_03360 PF03129 Anticodon binding domain M1S48_03360 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) M1S48_03365 PF00873 AcrB/AcrD/AcrF family M1S48_03380 PF00072 Response regulator receiver domain M1S48_03385 PF00072 Response regulator receiver domain M1S48_03390 PF01584 CheW-like domain M1S48_03395 PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term M1S48_03395 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain M1S48_03400 PF00072 Response regulator receiver domain M1S48_03400 PF01584 CheW-like domain M1S48_03400 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M1S48_03400 PF01627 Hpt domain M1S48_03410 PF01546 Peptidase family M20/M25/M40 M1S48_03410 PF07687 Peptidase dimerisation domain M1S48_03415 PF08085 Entericidin EcnA/B family M1S48_03425 PF04304 Protein of unknown function (DUF454) M1S48_03430 PF17969 L,D-transpeptidase C-terminal domain M1S48_03430 PF03734 L,D-transpeptidase catalytic domain M1S48_03470 PF00258 Flavodoxin M1S48_03470 PF00667 FAD binding domain M1S48_03470 PF00175 Oxidoreductase NAD-binding domain M1S48_03480 PF12805 FUSC-like inner membrane protein yccS M1S48_03485 PF07690 Major Facilitator Superfamily M1S48_03490 PF00881 Nitroreductase family M1S48_03505 PF01235 Sodium:alanine symporter family M1S48_03510 PF01734 Patatin-like phospholipase M1S48_03515 PF00291 Pyridoxal-phosphate dependent enzyme M1S48_03515 PF13291 ACT domain M1S48_03520 PF05992 SbmA/BacA-like family M1S48_03550 PF02934 GatB/GatE catalytic domain M1S48_03550 PF02637 GatB domain M1S48_03555 PF01425 Amidase M1S48_03560 PF02686 Glu-tRNAGln amidotransferase C subunit M1S48_03570 PF04085 rod shape-determining protein MreC M1S48_03575 PF04093 rod shape-determining protein MreD M1S48_03580 PF02545 Maf-like protein M1S48_03585 PF00575 S1 RNA binding domain M1S48_03585 PF10150 Ribonuclease E/G family M1S48_03595 PF06974 Protein of unknown function (DUF1298) M1S48_03595 PF03007 Wax ester synthase-like Acyl-CoA acyltransferase domain M1S48_03600 PF01507 Phosphoadenosine phosphosulfate reductase family M1S48_03615 PF02525 Flavodoxin-like fold M1S48_03635 PF02673 Bacitracin resistance protein BacA M1S48_03640 PF12833 Helix-turn-helix domain M1S48_03640 PF06719 AraC-type transcriptional regulator N-terminus M1S48_03645 PF08240 Alcohol dehydrogenase GroES-like domain M1S48_03645 PF14765 Polyketide synthase dehydratase M1S48_03645 PF00550 Phosphopantetheine attachment site M1S48_03645 PF08659 KR domain M1S48_03645 PF02801 Beta-ketoacyl synthase, C-terminal domain M1S48_03645 PF00698 Acyl transferase domain M1S48_03645 PF16197 Ketoacyl-synthetase C-terminal extension M1S48_03645 PF09277 Erythronolide synthase, docking M1S48_03645 PF08990 Erythronolide synthase docking M1S48_03645 PF00109 Beta-ketoacyl synthase, N-terminal domain M1S48_03650 PF01965 DJ-1/PfpI family M1S48_03660 PF00324 Amino acid permease M1S48_03665 PF04303 PrpF protein M1S48_03670 PF00348 Polyprenyl synthetase M1S48_03675 PF04237 YjbR M1S48_03680 PF01145 SPFH domain / Band 7 family M1S48_03690 PF01734 Patatin-like phospholipase M1S48_03710 PF08019 Phosphoethanolamine transferase EptA/EptB M1S48_03710 PF00884 Sulfatase M1S48_03715 PF00072 Response regulator receiver domain M1S48_03715 PF00486 Transcriptional regulatory protein, C terminal M1S48_03720 PF00512 His Kinase A (phospho-acceptor) domain M1S48_03720 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M1S48_03720 PF08521 Two-component sensor kinase N-terminal M1S48_03730 PF00909 Ammonium Transporter Family M1S48_03735 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M1S48_03735 PF03466 LysR substrate binding domain M1S48_03755 PF00133 tRNA synthetases class I (I, L, M and V) M1S48_03755 PF10458 Valyl tRNA synthetase tRNA binding arm M1S48_03755 PF08264 Anticodon-binding domain of tRNA M1S48_03775 PF01906 Putative heavy-metal-binding M1S48_03780 PF01906 Putative heavy-metal-binding M1S48_03785 PF02321 Outer membrane efflux protein M1S48_03790 PF00873 AcrB/AcrD/AcrF family M1S48_03795 PF00529 HlyD membrane-fusion protein of T1SS M1S48_03795 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion M1S48_03800 PF01569 PAP2 superfamily M1S48_03810 PF00348 Polyprenyl synthetase M1S48_03820 PF00829 Ribosomal prokaryotic L21 protein M1S48_03825 PF01016 Ribosomal L27 protein M1S48_03830 PF03548 Outer membrane lipoprotein carrier protein LolA M1S48_03840 PF02403 Seryl-tRNA synthetase N-terminal domain M1S48_03840 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) M1S48_03845 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases M1S48_03845 PF10414 Sirohaem synthase dimerisation region M1S48_03845 PF14824 Sirohaem biosynthesis protein central M1S48_03850 PF00588 SpoU rRNA Methylase family M1S48_03855 PF01638 HxlR-like helix-turn-helix M1S48_03860 PF03358 NADPH-dependent FMN reductase M1S48_03865 PF13520 Amino acid permease M1S48_03870 PF00465 Iron-containing alcohol dehydrogenase M1S48_03880 PF03099 Biotin/lipoate A/B protein ligase family M1S48_03885 PF04359 Protein of unknown function (DUF493) M1S48_03890 PF04545 Sigma-70, region 4 M1S48_03890 PF04539 Sigma-70 region 3 M1S48_03890 PF04542 Sigma-70 region 2 M1S48_03890 PF00140 Sigma-70 factor, region 1.2 M1S48_03890 PF03979 Sigma-70 factor, region 1.1 M1S48_03890 PF04546 Sigma-70, non-essential region M1S48_03910 PF17773 UPF0176 acylphosphatase like domain M1S48_03910 PF00581 Rhodanese-like domain M1S48_03920 PF00285 Citrate synthase, C-terminal domain M1S48_03925 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit M1S48_03930 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit M1S48_03935 PF02910 Fumarate reductase flavoprotein C-term M1S48_03935 PF00890 FAD binding domain M1S48_03940 PF13085 2Fe-2S iron-sulfur cluster binding domain M1S48_03955 PF00676 Dehydrogenase E1 component M1S48_03955 PF16870 2-oxoglutarate dehydrogenase C-terminal M1S48_03955 PF02779 Transketolase, pyrimidine binding domain M1S48_03955 PF16078 2-oxoglutarate dehydrogenase N-terminus M1S48_03960 PF02817 e3 binding domain M1S48_03960 PF00364 Biotin-requiring enzyme M1S48_03960 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) M1S48_03965 PF07992 Pyridine nucleotide-disulphide oxidoreductase M1S48_03965 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain M1S48_03970 PF08442 ATP-grasp domain M1S48_03970 PF00549 CoA-ligase M1S48_03975 PF02629 CoA binding domain M1S48_03975 PF00549 CoA-ligase M1S48_03980 PF00579 tRNA synthetases class I (W and Y) M1S48_03985 PF05661 Protein of unknown function (DUF808) M1S48_03990 PF04228 Putative neutral zinc metallopeptidase M1S48_03995 PF00999 Sodium/hydrogen exchanger family M1S48_04010 PF09587 Bacterial capsule synthesis protein PGA_cap M1S48_04020 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain M1S48_04025 PF00582 Universal stress protein family M1S48_04030 PF00132 Bacterial transferase hexapeptide (six repeats) M1S48_04035 PF01272 Transcription elongation factor, GreA/GreB, C-term M1S48_04035 PF03449 Transcription elongation factor, N-terminal M1S48_04040 PF02142 MGS-like domain M1S48_04040 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain M1S48_04040 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain M1S48_04045 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain M1S48_04045 PF00117 Glutamine amidotransferase class-I M1S48_04060 PF01985 CRS1 / YhbY (CRM) domain M1S48_04065 PF01728 FtsJ-like methyltransferase M1S48_04070 PF06480 FtsH Extracellular M1S48_04070 PF01434 Peptidase family M41 M1S48_04070 PF00004 ATPase family associated with various cellular activities (AAA) M1S48_04070 PF17862 AAA+ lid domain M1S48_04075 PF00809 Pterin binding enzyme M1S48_04095 PF09423 PhoD-like phosphatase M1S48_04095 PF16655 PhoD-like phosphatase, N-terminal domain M1S48_04110 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain M1S48_04110 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain M1S48_04125 PF00083 Sugar (and other) transporter M1S48_04130 PF02782 FGGY family of carbohydrate kinases, C-terminal domain M1S48_04130 PF00370 FGGY family of carbohydrate kinases, N-terminal domain M1S48_04135 PF01266 FAD dependent oxidoreductase M1S48_04135 PF16901 C-terminal domain of alpha-glycerophosphate oxidase M1S48_04140 PF00821 Phosphoenolpyruvate carboxykinase C-terminal P-loop domain M1S48_04140 PF17297 Phosphoenolpyruvate carboxykinase N-terminal domain M1S48_04145 PF00781 Diacylglycerol kinase catalytic domain M1S48_04150 PF00149 Calcineurin-like phosphoesterase M1S48_04160 PF00166 Chaperonin 10 Kd subunit M1S48_04165 PF00118 TCP-1/cpn60 chaperonin family M1S48_04170 PF01219 Prokaryotic diacylglycerol kinase M1S48_04180 PF03009 Glycerophosphoryl diester phosphodiesterase family M1S48_04185 PF00873 AcrB/AcrD/AcrF family M1S48_04195 PF01435 Peptidase family M48 M1S48_04200 PF01464 Transglycosylase SLT domain M1S48_04205 PF01171 PP-loop family M1S48_04215 PF00497 Bacterial extracellular solute-binding proteins, family 3 M1S48_04215 PF01464 Transglycosylase SLT domain M1S48_04220 PF01272 Transcription elongation factor, GreA/GreB, C-term M1S48_04220 PF03449 Transcription elongation factor, N-terminal M1S48_04235 PF00975 Thioesterase domain M1S48_04235 PF13193 AMP-binding enzyme C-terminal domain M1S48_04235 PF00501 AMP-binding enzyme M1S48_04235 PF00668 Condensation domain M1S48_04235 PF00550 Phosphopantetheine attachment site M1S48_04265 PF00881 Nitroreductase family M1S48_04280 PF02595 Glycerate kinase family M1S48_04285 PF00384 Molybdopterin oxidoreductase M1S48_04290 PF02634 FdhD/NarQ family M1S48_04295 PF06803 Protein of unknown function (DUF1232) M1S48_04300 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain M1S48_04300 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain M1S48_04300 PF11890 Domain of unknown function (DUF3410) M1S48_04305 PF00152 tRNA synthetases class II (D, K and N) M1S48_04315 PF18073 Rubredoxin metal binding domain M1S48_04320 PF00324 Amino acid permease M1S48_04330 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain M1S48_04330 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain M1S48_04335 PF01678 Diaminopimelate epimerase M1S48_04340 PF01810 LysE type translocator M1S48_04345 PF02899 Phage integrase, N-terminal SAM-like domain M1S48_04345 PF00589 Phage integrase family M1S48_04350 PF01012 Electron transfer flavoprotein domain M1S48_04355 PF01012 Electron transfer flavoprotein domain M1S48_04355 PF00766 Electron transfer flavoprotein FAD-binding domain M1S48_04360 PF03989 DNA gyrase C-terminal domain, beta-propeller M1S48_04360 PF00521 DNA gyrase/topoisomerase IV, subunit A M1S48_04375 PF00535 Glycosyl transferase family 2 M1S48_04395 PF13533 Biotin-lipoyl like M1S48_04405 PF00266 Aminotransferase class-V M1S48_04420 PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 M1S48_04430 PF12704 MacB-like periplasmic core domain M1S48_04430 PF02687 FtsX-like permease family M1S48_04435 PF00005 ABC transporter M1S48_04440 PF03772 Competence protein M1S48_04440 PF13567 Domain of unknown function (DUF4131) M1S48_04440 PF00753 Metallo-beta-lactamase superfamily M1S48_04450 PF06965 Na+/H+ antiporter 1 M1S48_04450 PF01343 Peptidase family S49 M1S48_04455 PF12697 Alpha/beta hydrolase family M1S48_04460 PF00551 Formyl transferase M1S48_04465 PF00586 AIR synthase related protein, N-terminal domain M1S48_04465 PF02769 AIR synthase related protein, C-terminal domain M1S48_04470 PF01594 AI-2E family transporter M1S48_04475 PF08299 Bacterial dnaA protein helix-turn-helix M1S48_04475 PF00308 Bacterial dnaA protein M1S48_04475 PF11638 DnaA N-terminal domain M1S48_04505 PF08032 RNA 2'-O ribose methyltransferase substrate binding M1S48_04505 PF00588 SpoU rRNA Methylase family M1S48_04510 PF00316 Fructose-1-6-bisphosphatase, N-terminal domain M1S48_04520 PF00691 OmpA family M1S48_04525 PF07676 WD40-like Beta Propeller Repeat M1S48_04525 PF04052 TolB amino-terminal domain M1S48_04535 PF02472 Biopolymer transport protein ExbD/TolR M1S48_04540 PF01618 MotA/TolQ/ExbB proton channel family M1S48_04545 PF03061 Thioesterase superfamily M1S48_04550 PF07687 Peptidase dimerisation domain M1S48_04550 PF01546 Peptidase family M20/M25/M40 M1S48_04555 PF17864 RuvB AAA lid domain M1S48_04555 PF05491 RuvB C-terminal winged helix domain M1S48_04555 PF05496 Holliday junction DNA helicase RuvB P-loop domain M1S48_04560 PF07499 RuvA, C-terminal domain M1S48_04560 PF01330 RuvA N terminal domain M1S48_04565 PF01966 HD domain M1S48_04570 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain M1S48_04570 PF18076 Formylglycinamide ribonucleotide amidotransferase N-terminal M1S48_04570 PF02769 AIR synthase related protein, C-terminal domain M1S48_04575 PF07690 Major Facilitator Superfamily M1S48_04580 PF01784 NIF3 (NGG1p interacting factor 3) M1S48_04585 PF00378 Enoyl-CoA hydratase/isomerase M1S48_04590 PF01467 Cytidylyltransferase-like M1S48_04590 PF00293 NUDIX domain M1S48_04600 PF00578 AhpC/TSA family M1S48_04615 PF06508 Queuosine biosynthesis protein QueC M1S48_04625 PF00132 Bacterial transferase hexapeptide (six repeats) M1S48_04625 PF14602 Hexapeptide repeat of succinyl-transferase M1S48_04625 PF14805 Tetrahydrodipicolinate N-succinyltransferase N-terminal M1S48_04635 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M1S48_04635 PF03466 LysR substrate binding domain M1S48_04640 PF00005 ABC transporter M1S48_04640 PF12857 TOBE-like domain M1S48_04645 PF00528 Binding-protein-dependent transport system inner membrane component M1S48_04650 PF00528 Binding-protein-dependent transport system inner membrane component M1S48_04665 PF01063 Amino-transferase class IV M1S48_04670 PF02618 YceG-like family M1S48_04675 PF02223 Thymidylate kinase M1S48_04685 PF02910 Fumarate reductase flavoprotein C-term M1S48_04685 PF00890 FAD binding domain M1S48_04690 PF13180 PDZ domain M1S48_04700 PF00679 Elongation factor G C-terminus M1S48_04700 PF06421 GTP-binding protein LepA C-terminus M1S48_04700 PF03144 Elongation factor Tu domain 2 M1S48_04700 PF00009 Elongation factor Tu GTP binding domain M1S48_04705 PF10502 Signal peptidase, peptidase S26 M1S48_04715 PF00035 Double-stranded RNA binding motif M1S48_04715 PF14622 Ribonuclease-III-like M1S48_04720 PF01926 50S ribosome-binding GTPase M1S48_04720 PF07650 KH domain M1S48_04730 PF02565 Recombination protein O C terminal M1S48_04730 PF11967 Recombination protein O N terminal M1S48_04735 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ M1S48_04740 PF06175 tRNA-(MS[2]IO[6]A)-hydroxylase (MiaE) M1S48_04745 PF00106 short chain dehydrogenase M1S48_04775 PF00155 Aminotransferase class I and II M1S48_04785 PF17151 Periplasmic sensor domain M1S48_04785 PF00990 Diguanylate cyclase, GGDEF domain M1S48_04795 PF04851 Type III restriction enzyme, res subunit M1S48_04795 PF00271 Helicase conserved C-terminal domain M1S48_04795 PF02151 UvrB/uvrC motif M1S48_04795 PF17757 UvrB interaction domain M1S48_04795 PF12344 Ultra-violet resistance protein B M1S48_04805 PF00892 EamA-like transporter family M1S48_04810 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain M1S48_04810 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain M1S48_04825 PF01018 GTP1/OBG M1S48_04825 PF01926 50S ribosome-binding GTPase M1S48_04830 PF00696 Amino acid kinase family M1S48_04830 PF01472 PUA domain M1S48_04840 PF07759 Protein of unknown function (DUF1615) M1S48_04845 PF01207 Dihydrouridine synthase (Dus) M1S48_04850 PF03060 Nitronate monooxygenase M1S48_04865 PF02350 UDP-N-acetylglucosamine 2-epimerase M1S48_04905 PF03441 FAD binding domain of DNA photolyase M1S48_04905 PF00875 DNA photolyase M1S48_04910 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase M1S48_04915 PF07992 Pyridine nucleotide-disulphide oxidoreductase M1S48_04920 PF07943 Penicillin-binding protein 5, C-terminal domain M1S48_04920 PF00768 D-alanyl-D-alanine carboxypeptidase M1S48_04930 PF03971 Monomeric isocitrate dehydrogenase M1S48_04935 PF00849 RNA pseudouridylate synthase M1S48_04940 PF00180 Isocitrate/isopropylmalate dehydrogenase M1S48_04960 PF06779 Uncharacterised MFS-type transporter YbfB M1S48_04965 PF03466 LysR substrate binding domain M1S48_04965 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M1S48_04970 PF00375 Sodium:dicarboxylate symporter family M1S48_04975 PF02567 Phenazine biosynthesis-like protein M1S48_04980 PF00675 Insulinase (Peptidase family M16) M1S48_04980 PF05193 Peptidase M16 inactive domain M1S48_05005 PF02581 Thiamine monophosphate synthase M1S48_05010 PF00202 Aminotransferase class-III M1S48_05020 PF00849 RNA pseudouridylate synthase M1S48_05025 PF00271 Helicase conserved C-terminal domain M1S48_05025 PF12137 RNA polymerase recycling family C-terminal M1S48_05025 PF00176 SNF2 family N-terminal domain M1S48_05025 PF18339 RapA N-terminal Tudor like domain 1 M1S48_05025 PF18337 RapA N-terminal Tudor like domain M1S48_05035 PF00440 Bacterial regulatory proteins, tetR family M1S48_05040 PF00970 Oxidoreductase FAD-binding domain M1S48_05040 PF00111 2Fe-2S iron-sulfur cluster binding domain M1S48_05040 PF00175 Oxidoreductase NAD-binding domain M1S48_05045 PF00487 Fatty acid desaturase M1S48_05055 PF17754 MftR C-terminal domain M1S48_05055 PF00440 Bacterial regulatory proteins, tetR family M1S48_05065 PF00202 Aminotransferase class-III M1S48_05070 PF00282 Pyridoxal-dependent decarboxylase conserved domain M1S48_05075 PF00171 Aldehyde dehydrogenase family M1S48_05080 PF01037 Lrp/AsnC ligand binding domain M1S48_05085 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain M1S48_05085 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain M1S48_05085 PF00205 Thiamine pyrophosphate enzyme, central domain M1S48_05090 PF00324 Amino acid permease M1S48_05095 PF12849 PBP superfamily domain M1S48_05100 PF00528 Binding-protein-dependent transport system inner membrane component M1S48_05105 PF00528 Binding-protein-dependent transport system inner membrane component M1S48_05110 PF00005 ABC transporter M1S48_05115 PF08496 Peptidase family S49 N-terminal M1S48_05115 PF01343 Peptidase family S49 M1S48_05130 PF00206 Lyase M1S48_05130 PF08328 Adenylosuccinate lyase C-terminal M1S48_05135 PF04356 Protein of unknown function (DUF489) M1S48_05145 PF00293 NUDIX domain M1S48_05145 PF13344 Haloacid dehalogenase-like hydrolase M1S48_05150 PF00132 Bacterial transferase hexapeptide (six repeats) M1S48_05155 PF07943 Penicillin-binding protein 5, C-terminal domain M1S48_05155 PF00768 D-alanyl-D-alanine carboxypeptidase M1S48_05170 PF01975 Survival protein SurE M1S48_05175 PF01476 LysM domain M1S48_05175 PF01551 Peptidase family M23 M1S48_05180 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M1S48_05180 PF03466 LysR substrate binding domain M1S48_05185 PF13654 AAA domain M1S48_05185 PF05362 Lon protease (S16) C-terminal proteolytic domain M1S48_05190 PF07690 Major Facilitator Superfamily M1S48_05195 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily M1S48_05200 PF13593 SBF-like CPA transporter family (DUF4137) M1S48_05205 PF01197 Ribosomal protein L31 M1S48_05220 PF04055 Radical SAM superfamily M1S48_05225 PF01132 Elongation factor P (EF-P) OB domain M1S48_05225 PF08207 Elongation factor P (EF-P) KOW-like domain M1S48_05225 PF09285 Elongation factor P, C-terminal M1S48_05230 PF02554 Carbon starvation protein CstA M1S48_05230 PF13722 5TM C-terminal transporter carbon starvation CstA M1S48_05235 PF04328 Selenoprotein, putative M1S48_05270 PF13556 PucR C-terminal helix-turn-helix domain M1S48_05270 PF06018 CodY GAF-like domain M1S48_05270 PF17853 GGDEF-like domain M1S48_05285 PF00171 Aldehyde dehydrogenase family M1S48_05290 PF00324 Amino acid permease M1S48_05295 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M1S48_05295 PF03466 LysR substrate binding domain M1S48_05300 PF02028 BCCT, betaine/carnitine/choline family transporter M1S48_05305 PF02028 BCCT, betaine/carnitine/choline family transporter M1S48_05310 PF00355 Rieske [2Fe-2S] domain M1S48_05310 PF00848 Ring hydroxylating alpha subunit (catalytic domain) M1S48_05315 PF00171 Aldehyde dehydrogenase family M1S48_05325 PF07992 Pyridine nucleotide-disulphide oxidoreductase M1S48_05325 PF18113 Rubredoxin binding C-terminal domain M1S48_05330 PF01266 FAD dependent oxidoreductase M1S48_05330 PF05430 S-adenosyl-L-methionine-dependent methyltransferase M1S48_05350 PF00892 EamA-like transporter family M1S48_05360 PF02604 Antitoxin Phd_YefM, type II toxin-antitoxin system M1S48_05365 PF00083 Sugar (and other) transporter M1S48_05370 PF13378 Enolase C-terminal domain-like M1S48_05370 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain M1S48_05375 PF00109 Beta-ketoacyl synthase, N-terminal domain M1S48_05375 PF00698 Acyl transferase domain M1S48_05375 PF08240 Alcohol dehydrogenase GroES-like domain M1S48_05375 PF08990 Erythronolide synthase docking M1S48_05375 PF09277 Erythronolide synthase, docking M1S48_05375 PF16197 Ketoacyl-synthetase C-terminal extension M1S48_05375 PF02801 Beta-ketoacyl synthase, C-terminal domain M1S48_05375 PF08659 KR domain M1S48_05375 PF00550 Phosphopantetheine attachment site M1S48_05375 PF14765 Polyketide synthase dehydratase M1S48_05380 PF00440 Bacterial regulatory proteins, tetR family M1S48_05400 PF02678 Pirin M1S48_05400 PF17954 Quercetinase C-terminal cupin domain M1S48_05410 PF13309 HTH domain M1S48_05410 PF08348 YheO-like PAS domain M1S48_05420 PF13193 AMP-binding enzyme C-terminal domain M1S48_05420 PF00550 Phosphopantetheine attachment site M1S48_05420 PF00668 Condensation domain M1S48_05420 PF00501 AMP-binding enzyme M1S48_05425 PF13193 AMP-binding enzyme C-terminal domain M1S48_05425 PF00668 Condensation domain M1S48_05425 PF00975 Thioesterase domain M1S48_05425 PF00501 AMP-binding enzyme M1S48_05425 PF00550 Phosphopantetheine attachment site M1S48_05430 PF01032 FecCD transport family M1S48_05435 PF01032 FecCD transport family M1S48_05440 PF00005 ABC transporter M1S48_05445 PF01497 Periplasmic binding protein M1S48_05450 PF07715 TonB-dependent Receptor Plug Domain M1S48_05450 PF00593 TonB dependent receptor M1S48_05455 PF13434 L-lysine 6-monooxygenase (NADPH-requiring) M1S48_05460 PF00550 Phosphopantetheine attachment site M1S48_05460 PF00501 AMP-binding enzyme M1S48_05460 PF00668 Condensation domain M1S48_05465 PF00501 AMP-binding enzyme M1S48_05465 PF13193 AMP-binding enzyme C-terminal domain M1S48_05470 PF00857 Isochorismatase family M1S48_05470 PF00550 Phosphopantetheine attachment site M1S48_05475 PF00282 Pyridoxal-dependent decarboxylase conserved domain M1S48_05485 PF00005 ABC transporter M1S48_05490 PF00005 ABC transporter M1S48_05495 PF00975 Thioesterase domain M1S48_05505 PF00425 chorismate binding enzyme M1S48_05515 PF01208 Uroporphyrinogen decarboxylase (URO-D) M1S48_05520 PF05675 Protein of unknown function (DUF817) M1S48_05535 PF00144 Beta-lactamase M1S48_05545 PF01227 GTP cyclohydrolase I M1S48_05550 PF01799 [2Fe-2S] binding domain M1S48_05550 PF00111 2Fe-2S iron-sulfur cluster binding domain M1S48_05555 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain M1S48_05555 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase M1S48_05570 PF00218 Indole-3-glycerol phosphate synthase M1S48_05575 PF02885 Glycosyl transferase family, helical bundle domain M1S48_05575 PF00591 Glycosyl transferase family, a/b domain M1S48_05580 PF07715 TonB-dependent Receptor Plug Domain M1S48_05580 PF00593 TonB dependent receptor M1S48_05585 PF11838 ERAP1-like C-terminal domain M1S48_05585 PF01433 Peptidase family M1 domain M1S48_05590 PF00117 Glutamine amidotransferase class-I M1S48_05600 PF00854 POT family M1S48_05605 PF00120 Glutamine synthetase, catalytic domain M1S48_05605 PF03951 Glutamine synthetase, beta-Grasp domain M1S48_05610 PF04345 Chorismate lyase M1S48_05615 PF01040 UbiA prenyltransferase family M1S48_05650 PF02777 Iron/manganese superoxide dismutases, C-terminal domain M1S48_05650 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain M1S48_05655 PF01784 NIF3 (NGG1p interacting factor 3) M1S48_05660 PF13180 PDZ domain M1S48_05665 PF12627 Probable RNA and SrmB- binding site of polymerase A M1S48_05665 PF01743 Poly A polymerase head domain M1S48_05670 PF01515 Phosphate acetyl/butaryl transferase M1S48_05670 PF00390 Malic enzyme, N-terminal domain M1S48_05670 PF03949 Malic enzyme, NAD binding domain M1S48_05675 PF00990 Diguanylate cyclase, GGDEF domain M1S48_05675 PF00563 EAL domain M1S48_05675 PF03707 Bacterial signalling protein N terminal repeat M1S48_05680 PF04452 RNA methyltransferase M1S48_05685 PF02219 Methylenetetrahydrofolate reductase M1S48_05690 PF05221 S-adenosyl-L-homocysteine hydrolase M1S48_05690 PF00670 S-adenosyl-L-homocysteine hydrolase, NAD binding domain M1S48_05705 PF00441 Acyl-CoA dehydrogenase, C-terminal domain M1S48_05705 PF02771 Acyl-CoA dehydrogenase, N-terminal domain M1S48_05705 PF09317 Domain of unknown function (DUF1974) M1S48_05710 PF04055 Radical SAM superfamily M1S48_05715 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain M1S48_05715 PF07992 Pyridine nucleotide-disulphide oxidoreductase M1S48_05725 PF07690 Major Facilitator Superfamily M1S48_05735 PF00557 Metallopeptidase family M24 M1S48_05740 PF00318 Ribosomal protein S2 M1S48_05745 PF00889 Elongation factor TS M1S48_05755 PF12833 Helix-turn-helix domain M1S48_05775 PF03330 Lytic transglycolase M1S48_05775 PF05036 Sporulation related domain M1S48_05780 PF13406 Transglycosylase SLT domain M1S48_05785 PF01098 Cell cycle protein M1S48_05795 PF14819 Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term M1S48_05795 PF14489 QueF-like protein M1S48_05800 PF01061 ABC-2 type transporter M1S48_05805 PF00005 ABC transporter M1S48_05835 PF00464 Serine hydroxymethyltransferase M1S48_05840 PF02321 Outer membrane efflux protein M1S48_05845 PF00873 AcrB/AcrD/AcrF family M1S48_05850 PF13533 Biotin-lipoyl like M1S48_05855 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M1S48_05855 PF03466 LysR substrate binding domain M1S48_05860 PF00497 Bacterial extracellular solute-binding proteins, family 3 M1S48_05865 PF00528 Binding-protein-dependent transport system inner membrane component M1S48_05870 PF00528 Binding-protein-dependent transport system inner membrane component M1S48_05875 PF00005 ABC transporter M1S48_05880 PF00893 Small Multidrug Resistance protein M1S48_05885 PF00037 4Fe-4S binding domain M1S48_05890 PF16325 Peptidase family U32 C-terminal domain M1S48_05890 PF01136 Peptidase family U32 M1S48_05895 PF00392 Bacterial regulatory proteins, gntR family M1S48_05895 PF00155 Aminotransferase class I and II M1S48_05900 PF02567 Phenazine biosynthesis-like protein M1S48_05905 PF00175 Oxidoreductase NAD-binding domain M1S48_05905 PF00970 Oxidoreductase FAD-binding domain M1S48_05910 PF18389 TrmO C-terminal domain M1S48_05910 PF01980 tRNA-methyltransferase O M1S48_05920 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain M1S48_05920 PF00437 Type II/IV secretion system protein M1S48_05930 PF00486 Transcriptional regulatory protein, C terminal M1S48_05930 PF00072 Response regulator receiver domain M1S48_05935 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M1S48_05935 PF00512 His Kinase A (phospho-acceptor) domain M1S48_05935 PF08521 Two-component sensor kinase N-terminal M1S48_05945 PF00293 NUDIX domain M1S48_05955 PF00905 Penicillin binding protein transpeptidase domain M1S48_05955 PF14814 Bifunctional transglycosylase second domain M1S48_05955 PF00912 Transglycosylase M1S48_05960 PF01513 ATP-NAD kinase M1S48_05965 PF07023 Protein of unknown function (DUF1315) M1S48_05970 PF02885 Glycosyl transferase family, helical bundle domain M1S48_05970 PF00591 Glycosyl transferase family, a/b domain M1S48_05975 PF00375 Sodium:dicarboxylate symporter family M1S48_05980 PF02771 Acyl-CoA dehydrogenase, N-terminal domain M1S48_05980 PF00441 Acyl-CoA dehydrogenase, C-terminal domain M1S48_05980 PF02770 Acyl-CoA dehydrogenase, middle domain M1S48_05985 PF00756 Putative esterase M1S48_05990 PF01842 ACT domain M1S48_05990 PF01817 Chorismate mutase type II M1S48_05990 PF00800 Prephenate dehydratase M1S48_05995 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) M1S48_06005 PF07687 Peptidase dimerisation domain M1S48_06005 PF01546 Peptidase family M20/M25/M40 M1S48_06010 PF12706 Beta-lactamase superfamily domain M1S48_06020 PF03883 Peroxide stress protein YaaA M1S48_06030 PF05690 Thiazole biosynthesis protein ThiG M1S48_06040 PF04241 Protein of unknown function (DUF423) M1S48_06045 PF04545 Sigma-70, region 4 M1S48_06045 PF04542 Sigma-70 region 2 M1S48_06045 PF00140 Sigma-70 factor, region 1.2 M1S48_06060 PF00313 'Cold-shock' DNA-binding domain M1S48_06065 PF00270 DEAD/DEAH box helicase M1S48_06065 PF00271 Helicase conserved C-terminal domain M1S48_06075 PF00881 Nitroreductase family M1S48_06080 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus M1S48_06080 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus M1S48_06100 PF01180 Dihydroorotate dehydrogenase M1S48_06105 PF02674 Colicin V production protein M1S48_06110 PF00156 Phosphoribosyl transferase domain M1S48_06125 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain M1S48_06125 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain M1S48_06130 PF01435 Peptidase family M48 M1S48_06135 PF09424 Yqey-like protein M1S48_06140 PF01165 Ribosomal protein S21 M1S48_06145 PF00814 Glycoprotease family M1S48_06165 PF00069 Protein kinase domain M1S48_06190 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M1S48_06190 PF03466 LysR substrate binding domain M1S48_06195 PF00202 Aminotransferase class-III M1S48_06200 PF00171 Aldehyde dehydrogenase family M1S48_06205 PF00324 Amino acid permease M1S48_06235 PF04076 Bacterial OB fold (BOF) protein M1S48_06260 PF00561 alpha/beta hydrolase fold M1S48_06265 PF03616 Sodium/glutamate symporter M1S48_06275 PF07729 FCD domain M1S48_06275 PF00392 Bacterial regulatory proteins, gntR family M1S48_06325 PF08946 Osmosensory transporter coiled coil M1S48_06325 PF00083 Sugar (and other) transporter M1S48_06350 PF00155 Aminotransferase class I and II M1S48_06355 PF06826 Predicted Permease Membrane Region M1S48_06355 PF02080 TrkA-C domain M1S48_06365 PF04403 Paraquat-inducible protein A M1S48_06370 PF02470 MlaD protein M1S48_06380 PF01177 Asp/Glu/Hydantoin racemase M1S48_06385 PF00892 EamA-like transporter family M1S48_06390 PF07995 Glucose / Sorbosone dehydrogenase M1S48_06400 PF13610 DDE domain M1S48_06415 PF13610 DDE domain M1S48_06425 PF00132 Bacterial transferase hexapeptide (six repeats) M1S48_06430 PF13610 DDE domain M1S48_06435 PF00893 Small Multidrug Resistance protein M1S48_06440 PF00809 Pterin binding enzyme M1S48_06455 PF07091 Ribosomal RNA methyltransferase (FmrO) M1S48_06470 PF00005 ABC transporter M1S48_06470 PF12848 ABC transporter M1S48_06475 PF01636 Phosphotransferase enzyme family M1S48_06485 PF03050 Transposase IS66 family M1S48_06485 PF13817 IS66 C-terminal element M1S48_06485 PF13007 Transposase C of IS166 homeodomain M1S48_06485 PF13005 zinc-finger binding domain of transposase IS66 M1S48_06510 PF13610 DDE domain M1S48_06525 PF00375 Sodium:dicarboxylate symporter family M1S48_06535 PF16123 Hydroxyacylglutathione hydrolase C-terminus M1S48_06535 PF00753 Metallo-beta-lactamase superfamily M1S48_06540 PF00528 Binding-protein-dependent transport system inner membrane component M1S48_06545 PF09383 NIL domain M1S48_06545 PF00005 ABC transporter M1S48_06550 PF03180 NLPA lipoprotein M1S48_06555 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain M1S48_06555 PF02843 Phosphoribosylglycinamide synthetase, C domain M1S48_06555 PF02844 Phosphoribosylglycinamide synthetase, N domain M1S48_06560 PF01808 AICARFT/IMPCHase bienzyme M1S48_06560 PF02142 MGS-like domain M1S48_06565 PF02954 Bacterial regulatory protein, Fis family M1S48_06585 PF01134 Glucose inhibited division protein A M1S48_06585 PF13932 GidA associated domain M1S48_06595 PF14403 Circularly permuted ATP-grasp type 2 M1S48_06605 PF01841 Transglutaminase-like superfamily M1S48_06605 PF08379 Bacterial transglutaminase-like N-terminal region M1S48_06615 PF00842 Alanine racemase, C-terminal domain M1S48_06615 PF01168 Alanine racemase, N-terminal domain M1S48_06620 PF00772 DnaB-like helicase N terminal domain M1S48_06620 PF03796 DnaB-like helicase C terminal domain M1S48_06625 PF03948 Ribosomal protein L9, C-terminal domain M1S48_06625 PF01281 Ribosomal protein L9, N-terminal domain M1S48_06630 PF01084 Ribosomal protein S18 M1S48_06635 PF01250 Ribosomal protein S6 M1S48_06640 PF01040 UbiA prenyltransferase family M1S48_06645 PF03626 Prokaryotic Cytochrome C oxidase subunit IV M1S48_06650 PF00510 Cytochrome c oxidase subunit III M1S48_06655 PF00115 Cytochrome C and Quinol oxidase polypeptide I M1S48_06660 PF06481 COX Aromatic Rich Motif M1S48_06660 PF00116 Cytochrome C oxidase subunit II, periplasmic domain M1S48_06670 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain M1S48_06670 PF02896 PEP-utilising enzyme, TIM barrel domain M1S48_06670 PF00391 PEP-utilising enzyme, mobile domain M1S48_06675 PF03618 Kinase/pyrophosphorylase M1S48_06685 PF01522 Polysaccharide deacetylase M1S48_06685 PF14883 Hypothetical glycosyl hydrolase family 13 M1S48_06690 PF00535 Glycosyl transferase family 2 M1S48_06695 PF13994 PgaD-like protein M1S48_06705 PF00296 Luciferase-like monooxygenase M1S48_06720 PF03466 LysR substrate binding domain M1S48_06720 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M1S48_06730 PF00472 RF-1 domain M1S48_06730 PF03462 PCRF domain M1S48_06735 PF17827 PrmC N-terminal domain M1S48_06735 PF13847 Methyltransferase domain M1S48_06740 PF00528 Binding-protein-dependent transport system inner membrane component M1S48_06745 PF09084 NMT1/THI5 like M1S48_06750 PF12833 Helix-turn-helix domain M1S48_06755 PF00106 short chain dehydrogenase M1S48_06760 PF02770 Acyl-CoA dehydrogenase, middle domain M1S48_06760 PF02771 Acyl-CoA dehydrogenase, N-terminal domain M1S48_06760 PF00441 Acyl-CoA dehydrogenase, C-terminal domain M1S48_06765 PF13193 AMP-binding enzyme C-terminal domain M1S48_06765 PF00501 AMP-binding enzyme M1S48_06770 PF01613 Flavin reductase like domain M1S48_06775 PF00899 ThiF family M1S48_06780 PF03109 ABC1 family M1S48_06795 PF03814 Potassium-transporting ATPase A subunit M1S48_06805 PF02669 K+-transporting ATPase, c chain M1S48_06810 PF02702 Osmosensitive K+ channel His kinase sensor domain M1S48_06810 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M1S48_06810 PF13493 Domain of unknown function (DUF4118) M1S48_06810 PF00512 His Kinase A (phospho-acceptor) domain M1S48_06815 PF00486 Transcriptional regulatory protein, C terminal M1S48_06815 PF00072 Response regulator receiver domain M1S48_06820 PF00120 Glutamine synthetase, catalytic domain M1S48_06830 PF03232 Ubiquinone biosynthesis protein COQ7 M1S48_06835 PF07690 Major Facilitator Superfamily M1S48_06840 PF01103 Surface antigen M1S48_06840 PF17243 POTRA domain TamA domain 1 M1S48_06840 PF07244 Surface antigen variable number repeat M1S48_06855 PF06434 Aconitate hydratase 2 N-terminus M1S48_06855 PF00330 Aconitase family (aconitate hydratase) M1S48_06855 PF11791 Aconitate B N-terminal domain M1S48_06865 PF00027 Cyclic nucleotide-binding domain M1S48_06865 PF00520 Ion transport protein M1S48_06870 PF07690 Major Facilitator Superfamily M1S48_06885 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M1S48_06885 PF03466 LysR substrate binding domain M1S48_06890 PF04284 Protein of unknown function (DUF441) M1S48_06900 PF01479 S4 domain M1S48_06900 PF00849 RNA pseudouridylate synthase M1S48_06915 PF00849 RNA pseudouridylate synthase M1S48_06915 PF01479 S4 domain M1S48_06920 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE M1S48_06925 PF08676 MutL C terminal dimerisation domain M1S48_06925 PF01119 DNA mismatch repair protein, C-terminal domain M1S48_06935 PF17209 Hfq protein M1S48_06945 PF00881 Nitroreductase family M1S48_06955 PF00149 Calcineurin-like phosphoesterase M1S48_06960 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD M1S48_06965 PF00749 tRNA synthetases class I (E and Q), catalytic domain M1S48_06965 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain M1S48_06970 PF00117 Glutamine amidotransferase class-I M1S48_06970 PF00958 GMP synthase C terminal domain M1S48_06970 PF02540 NAD synthase M1S48_06975 PF05985 Ethanolamine ammonia-lyase light chain (EutC) M1S48_06980 PF06751 Ethanolamine ammonia lyase large subunit (EutB) M1S48_06985 PF13520 Amino acid permease M1S48_06990 PF00171 Aldehyde dehydrogenase family M1S48_07005 PF00465 Iron-containing alcohol dehydrogenase M1S48_07010 PF05970 PIF1-like helicase M1S48_07010 PF14493 Helix-turn-helix domain M1S48_07020 PF06445 GyrI-like small molecule binding domain M1S48_07025 PF02110 Hydroxyethylthiazole kinase family M1S48_07040 PF01433 Peptidase family M1 domain M1S48_07040 PF17432 Domain of unknown function (DUF3458_C) ARM repeats M1S48_07040 PF11940 Domain of unknown function (DUF3458) Ig-like fold M1S48_07050 PF00106 short chain dehydrogenase M1S48_07060 PF01817 Chorismate mutase type II M1S48_07065 PF01037 Lrp/AsnC ligand binding domain M1S48_07080 PF00440 Bacterial regulatory proteins, tetR family M1S48_07085 PF00593 TonB dependent receptor M1S48_07085 PF07715 TonB-dependent Receptor Plug Domain M1S48_07090 PF00924 Mechanosensitive ion channel M1S48_07130 PF07715 TonB-dependent Receptor Plug Domain M1S48_07130 PF00593 TonB dependent receptor M1S48_07150 PF00005 ABC transporter M1S48_07150 PF12848 ABC transporter M1S48_07155 PF00582 Universal stress protein family M1S48_07180 PF00689 Cation transporting ATPase, C-terminus M1S48_07180 PF00690 Cation transporter/ATPase, N-terminus M1S48_07185 PF02308 MgtC family M1S48_07190 PF03594 Benzoate membrane transport protein M1S48_07195 PF01037 Lrp/AsnC ligand binding domain M1S48_07200 PF01810 LysE type translocator M1S48_07205 PF00923 Transaldolase/Fructose-6-phosphate aldolase M1S48_07210 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M1S48_07210 PF03466 LysR substrate binding domain M1S48_07220 PF02803 Thiolase, C-terminal domain M1S48_07220 PF00108 Thiolase, N-terminal domain M1S48_07230 PF01575 MaoC like domain M1S48_07235 PF00144 Beta-lactamase M1S48_07245 PF07690 Major Facilitator Superfamily M1S48_07250 PF12170 DNA polymerase III tau subunit V interacting with alpha M1S48_07250 PF12169 DNA polymerase III subunits gamma and tau domain III M1S48_07250 PF12168 DNA polymerase III subunits tau domain IV DnaB-binding M1S48_07255 PF04185 Phosphoesterase family M1S48_07255 PF05506 Domain of unknown function (DUF756) M1S48_07260 PF03061 Thioesterase superfamily M1S48_07265 PF00465 Iron-containing alcohol dehydrogenase M1S48_07275 PF01451 Low molecular weight phosphotyrosine protein phosphatase M1S48_07280 PF01565 FAD binding domain M1S48_07280 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain M1S48_07295 PF01645 Conserved region in glutamate synthase M1S48_07625 PF12832 MFS_1 like family M1S48_07635 PF02785 Biotin carboxylase C-terminal domain M1S48_07635 PF00289 Biotin carboxylase, N-terminal domain M1S48_07635 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain M1S48_07640 PF00364 Biotin-requiring enzyme M1S48_07645 PF01220 Dehydroquinase class II M1S48_07650 PF00817 impB/mucB/samB family M1S48_07650 PF13438 Domain of unknown function (DUF4113) M1S48_07650 PF11799 impB/mucB/samB family C-terminal domain M1S48_07660 PF00005 ABC transporter M1S48_07665 PF00072 Response regulator receiver domain M1S48_07665 PF00486 Transcriptional regulatory protein, C terminal M1S48_07675 PF07992 Pyridine nucleotide-disulphide oxidoreductase M1S48_07675 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain M1S48_07675 PF01077 Nitrite and sulphite reductase 4Fe-4S domain M1S48_07675 PF04324 BFD-like [2Fe-2S] binding domain M1S48_07675 PF18267 Rubredoxin NAD+ reductase C-terminal domain M1S48_07675 PF13806 Rieske-like [2Fe-2S] domain M1S48_07680 PF07992 Pyridine nucleotide-disulphide oxidoreductase M1S48_07680 PF18267 Rubredoxin NAD+ reductase C-terminal domain M1S48_07680 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain M1S48_07680 PF01077 Nitrite and sulphite reductase 4Fe-4S domain M1S48_07680 PF04324 BFD-like [2Fe-2S] binding domain M1S48_07685 PF04324 BFD-like [2Fe-2S] binding domain M1S48_07685 PF00384 Molybdopterin oxidoreductase M1S48_07685 PF01568 Molydopterin dinucleotide binding domain M1S48_07685 PF04879 Molybdopterin oxidoreductase Fe4S4 domain M1S48_07690 PF12804 MobA-like NTP transferase domain M1S48_07695 PF01568 Molydopterin dinucleotide binding domain M1S48_07695 PF04879 Molybdopterin oxidoreductase Fe4S4 domain M1S48_07695 PF00384 Molybdopterin oxidoreductase M1S48_07700 PF04055 Radical SAM superfamily M1S48_07700 PF06463 Molybdenum Cofactor Synthesis C M1S48_07710 PF02391 MoaE protein M1S48_07715 PF01967 MoaC family M1S48_07715 PF00994 Probable molybdopterin binding domain M1S48_07720 PF03454 MoeA C-terminal region (domain IV) M1S48_07720 PF03453 MoeA N-terminal region (domain I and II) M1S48_07720 PF00994 Probable molybdopterin binding domain M1S48_07725 PF01638 HxlR-like helix-turn-helix M1S48_07730 PF00155 Aminotransferase class I and II M1S48_07730 PF00392 Bacterial regulatory proteins, gntR family M1S48_07735 PF00892 EamA-like transporter family M1S48_07755 PF02635 DsrE/DsrF-like family M1S48_07760 PF16363 GDP-mannose 4,6 dehydratase M1S48_07765 PF10415 Fumarase C C-terminus M1S48_07765 PF00206 Lyase M1S48_07785 PF01266 FAD dependent oxidoreductase M1S48_07795 PF02542 YgbB family M1S48_07805 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain M1S48_07805 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain M1S48_07825 PF02954 Bacterial regulatory protein, Fis family M1S48_07825 PF00072 Response regulator receiver domain M1S48_07825 PF00158 Sigma-54 interaction domain M1S48_07830 PF00989 PAS fold M1S48_07830 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M1S48_07830 PF00512 His Kinase A (phospho-acceptor) domain M1S48_07835 PF04055 Radical SAM superfamily M1S48_07835 PF00919 Uncharacterized protein family UPF0004 M1S48_07835 PF18693 TRAM domain M1S48_07840 PF00696 Amino acid kinase family M1S48_07845 PF01765 Ribosome recycling factor M1S48_07850 PF01255 Putative undecaprenyl diphosphate synthase M1S48_07860 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain M1S48_07860 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase M1S48_07860 PF13288 DXP reductoisomerase C-terminal domain M1S48_07865 PF13180 PDZ domain M1S48_07865 PF17820 PDZ domain M1S48_07865 PF02163 Peptidase family M50 M1S48_07870 PF07244 Surface antigen variable number repeat M1S48_07870 PF01103 Surface antigen M1S48_07880 PF00132 Bacterial transferase hexapeptide (six repeats) M1S48_07880 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD M1S48_07885 PF07977 FabA-like domain M1S48_07890 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 M1S48_07890 PF00132 Bacterial transferase hexapeptide (six repeats) M1S48_07905 PF02631 RecX family M1S48_07910 PF00154 recA bacterial DNA recombination protein M1S48_07915 PF01479 S4 domain M1S48_07920 PF13419 Haloacid dehalogenase-like hydrolase M1S48_07945 PF01037 Lrp/AsnC ligand binding domain M1S48_07950 PF00266 Aminotransferase class-V M1S48_07955 PF00324 Amino acid permease M1S48_07970 PF05922 Peptidase inhibitor I9 M1S48_07970 PF00082 Subtilase family M1S48_07975 PF01740 STAS domain M1S48_07975 PF00916 Sulfate permease family M1S48_07980 PF02586 SOS response associated peptidase (SRAP) M1S48_07985 PF07995 Glucose / Sorbosone dehydrogenase M1S48_07995 PF00563 EAL domain M1S48_07995 PF00990 Diguanylate cyclase, GGDEF domain M1S48_07995 PF03707 Bacterial signalling protein N terminal repeat M1S48_08015 PF02378 Phosphotransferase system, EIIC M1S48_08015 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit M1S48_08020 PF00294 pfkB family carbohydrate kinase M1S48_08025 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 M1S48_08025 PF02896 PEP-utilising enzyme, TIM barrel domain M1S48_08025 PF00391 PEP-utilising enzyme, mobile domain M1S48_08025 PF05524 PEP-utilising enzyme, N-terminal M1S48_08025 PF00381 PTS HPr component phosphorylation site M1S48_08050 PF05525 Branched-chain amino acid transport protein M1S48_08055 PF00557 Metallopeptidase family M24 M1S48_08060 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M1S48_08060 PF03466 LysR substrate binding domain M1S48_08070 PF00462 Glutaredoxin M1S48_08075 PF00202 Aminotransferase class-III M1S48_08080 PF00571 CBS domain M1S48_08080 PF00478 IMP dehydrogenase / GMP reductase domain M1S48_08105 PF00448 SRP54-type protein, GTPase domain M1S48_08105 PF02881 SRP54-type protein, helical bundle domain M1S48_08115 PF09829 Uncharacterized protein conserved in bacteria (DUF2057) M1S48_08130 PF08173 Membrane bound YbgT-like protein M1S48_08135 PF02322 Cytochrome bd terminal oxidase subunit II M1S48_08140 PF01654 Cytochrome bd terminal oxidase subunit I M1S48_08150 PF07290 Protein of unknown function (DUF1449) M1S48_08160 PF00294 pfkB family carbohydrate kinase M1S48_08165 PF07715 TonB-dependent Receptor Plug Domain M1S48_08165 PF00593 TonB dependent receptor M1S48_08170 PF05193 Peptidase M16 inactive domain M1S48_08170 PF00675 Insulinase (Peptidase family M16) M1S48_08170 PF08367 Peptidase M16C associated M1S48_08175 PF02253 Phospholipase A1 M1S48_08180 PF02386 Cation transport protein M1S48_08185 PF02080 TrkA-C domain M1S48_08185 PF02254 TrkA-N domain M1S48_08190 PF00585 C-terminal regulatory domain of Threonine dehydratase M1S48_08190 PF00291 Pyridoxal-phosphate dependent enzyme M1S48_08195 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) M1S48_08210 PF01118 Semialdehyde dehydrogenase, NAD binding domain M1S48_08210 PF02774 Semialdehyde dehydrogenase, dimerisation domain M1S48_08220 PF02617 ATP-dependent Clp protease adaptor protein ClpS M1S48_08225 PF07724 AAA domain (Cdc48 subfamily) M1S48_08225 PF17871 AAA lid domain M1S48_08225 PF02861 Clp amino terminal domain, pathogenicity island component M1S48_08225 PF10431 C-terminal, D2-small domain, of ClpB protein M1S48_08225 PF00004 ATPase family associated with various cellular activities (AAA) M1S48_08230 PF02694 Uncharacterised BCR, YnfA/UPF0060 family M1S48_08235 PF00793 DAHP synthetase I family M1S48_08250 PF00724 NADH:flavin oxidoreductase / NADH oxidase family M1S48_08250 PF07992 Pyridine nucleotide-disulphide oxidoreductase M1S48_08280 PF06418 CTP synthase N-terminus M1S48_08280 PF00117 Glutamine amidotransferase class-I M1S48_08285 PF00793 DAHP synthetase I family M1S48_08290 PF03952 Enolase, N-terminal domain M1S48_08290 PF00113 Enolase, C-terminal TIM barrel domain M1S48_08295 PF04239 Protein of unknown function (DUF421) M1S48_08300 PF04977 Septum formation initiator M1S48_08305 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase M1S48_08310 PF01144 Coenzyme A transferase M1S48_08315 PF01144 Coenzyme A transferase M1S48_08320 PF00108 Thiolase, N-terminal domain M1S48_08320 PF02803 Thiolase, C-terminal domain M1S48_08325 PF10397 Adenylosuccinate lyase C-terminus M1S48_08325 PF00206 Lyase M1S48_08330 PF00561 alpha/beta hydrolase fold M1S48_08335 PF07690 Major Facilitator Superfamily M1S48_08340 PF02627 Carboxymuconolactone decarboxylase family M1S48_08345 PF00775 Dioxygenase M1S48_08345 PF12391 Protocatechuate 3,4-dioxygenase beta subunit N terminal M1S48_08350 PF00775 Dioxygenase M1S48_08355 PF01487 Type I 3-dehydroquinase M1S48_08360 PF05048 Periplasmic copper-binding protein (NosD) M1S48_08365 PF04966 Carbohydrate-selective porin, OprB family M1S48_08370 PF13360 PQQ-like domain M1S48_08370 PF01011 PQQ enzyme repeat M1S48_08380 PF04143 Sulphur transport M1S48_08390 PF00753 Metallo-beta-lactamase superfamily M1S48_08395 PF01614 Bacterial transcriptional regulator M1S48_08395 PF09339 IclR helix-turn-helix domain M1S48_08400 PF03466 LysR substrate binding domain M1S48_08400 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M1S48_08405 PF02770 Acyl-CoA dehydrogenase, middle domain M1S48_08405 PF02771 Acyl-CoA dehydrogenase, N-terminal domain M1S48_08405 PF00441 Acyl-CoA dehydrogenase, C-terminal domain M1S48_08420 PF00106 short chain dehydrogenase M1S48_08430 PF07690 Major Facilitator Superfamily M1S48_08440 PF01425 Amidase M1S48_08445 PF08028 Acyl-CoA dehydrogenase, C-terminal domain M1S48_08460 PF00848 Ring hydroxylating alpha subunit (catalytic domain) M1S48_08460 PF00355 Rieske [2Fe-2S] domain M1S48_08475 PF00111 2Fe-2S iron-sulfur cluster binding domain M1S48_08475 PF00175 Oxidoreductase NAD-binding domain M1S48_08480 PF01613 Flavin reductase like domain M1S48_08485 PF02311 AraC-like ligand binding domain M1S48_08485 PF12833 Helix-turn-helix domain M1S48_08490 PF02728 Copper amine oxidase, N3 domain M1S48_08490 PF02727 Copper amine oxidase, N2 domain M1S48_08490 PF07833 Copper amine oxidase N-terminal domain M1S48_08490 PF01179 Copper amine oxidase, enzyme domain M1S48_08500 PF00171 Aldehyde dehydrogenase family M1S48_08505 PF01804 Penicillin amidase M1S48_08510 PF12146 Serine aminopeptidase, S33 M1S48_08515 PF02803 Thiolase, C-terminal domain M1S48_08515 PF00108 Thiolase, N-terminal domain M1S48_08520 PF01144 Coenzyme A transferase M1S48_08525 PF01144 Coenzyme A transferase M1S48_08530 PF04444 Catechol dioxygenase N terminus M1S48_08530 PF00775 Dioxygenase M1S48_08535 PF02426 Muconolactone delta-isomerase M1S48_08540 PF13378 Enolase C-terminal domain-like M1S48_08540 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain M1S48_08545 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M1S48_08545 PF03466 LysR substrate binding domain M1S48_08555 PF00392 Bacterial regulatory proteins, gntR family M1S48_08555 PF07729 FCD domain M1S48_08560 PF00920 Dehydratase family M1S48_08565 PF07690 Major Facilitator Superfamily M1S48_08575 PF00171 Aldehyde dehydrogenase family M1S48_08595 PF00441 Acyl-CoA dehydrogenase, C-terminal domain M1S48_08595 PF02771 Acyl-CoA dehydrogenase, N-terminal domain M1S48_08595 PF02770 Acyl-CoA dehydrogenase, middle domain M1S48_08605 PF02954 Bacterial regulatory protein, Fis family M1S48_08605 PF06506 Propionate catabolism activator M1S48_08605 PF00158 Sigma-54 interaction domain M1S48_08610 PF00501 AMP-binding enzyme M1S48_08610 PF13193 AMP-binding enzyme C-terminal domain M1S48_08615 PF04341 Protein of unknown function, DUF485 M1S48_08620 PF00474 Sodium:solute symporter family M1S48_08625 PF08240 Alcohol dehydrogenase GroES-like domain M1S48_08625 PF00107 Zinc-binding dehydrogenase M1S48_08630 PF00171 Aldehyde dehydrogenase family M1S48_08640 PF00561 alpha/beta hydrolase fold M1S48_08645 PF00199 Catalase M1S48_08645 PF06628 Catalase-related immune-responsive M1S48_08660 PF07859 alpha/beta hydrolase fold M1S48_08665 PF01047 MarR family M1S48_08670 PF00724 NADH:flavin oxidoreductase / NADH oxidase family M1S48_08670 PF07992 Pyridine nucleotide-disulphide oxidoreductase M1S48_08675 PF00106 short chain dehydrogenase M1S48_08680 PF01872 RibD C-terminal domain M1S48_08685 PF00376 MerR family regulatory protein M1S48_08685 PF09278 MerR, DNA binding M1S48_08695 PF07992 Pyridine nucleotide-disulphide oxidoreductase M1S48_08705 PF12706 Beta-lactamase superfamily domain M1S48_08710 PF08359 YsiA-like protein, C-terminal region M1S48_08710 PF00440 Bacterial regulatory proteins, tetR family M1S48_08720 PF00857 Isochorismatase family M1S48_08725 PF03466 LysR substrate binding domain M1S48_08725 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M1S48_08730 PF07995 Glucose / Sorbosone dehydrogenase M1S48_08735 PF00999 Sodium/hydrogen exchanger family M1S48_08735 PF02254 TrkA-N domain M1S48_08745 PF01546 Peptidase family M20/M25/M40 M1S48_08745 PF07687 Peptidase dimerisation domain M1S48_08755 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB M1S48_08755 PF17287 POTRA domain M1S48_08755 PF08479 POTRA domain, ShlB-type M1S48_08760 PF13018 Extended Signal Peptide of Type V secretion system M1S48_08760 PF13332 Hemagglutinin repeat M1S48_08760 PF05860 haemagglutination activity domain M1S48_08760 PF04829 Pre-toxin domain with VENN motif M1S48_08775 PF07690 Major Facilitator Superfamily M1S48_08780 PF04909 Amidohydrolase M1S48_08790 PF00392 Bacterial regulatory proteins, gntR family M1S48_08790 PF07702 UTRA domain M1S48_08795 PF08450 SMP-30/Gluconolactonase/LRE-like region M1S48_08805 PF03466 LysR substrate binding domain M1S48_08805 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M1S48_08825 PF07690 Major Facilitator Superfamily M1S48_08830 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain M1S48_08830 PF01842 ACT domain M1S48_08830 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain M1S48_08835 PF03737 Aldolase/RraA M1S48_08955 PF01555 DNA methylase M1S48_09140 PF01476 LysM domain M1S48_09140 PF08525 Opacity-associated protein A N-terminal motif M1S48_09140 PF01551 Peptidase family M23 M1S48_09210 PF00529 HlyD membrane-fusion protein of T1SS M1S48_09210 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion M1S48_09225 PF00171 Aldehyde dehydrogenase family M1S48_09240 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M1S48_09240 PF03466 LysR substrate binding domain M1S48_09245 PF01370 NAD dependent epimerase/dehydratase family M1S48_09250 PF07690 Major Facilitator Superfamily M1S48_09255 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase M1S48_09255 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase M1S48_09260 PF06719 AraC-type transcriptional regulator N-terminus M1S48_09260 PF12833 Helix-turn-helix domain M1S48_09275 PF00107 Zinc-binding dehydrogenase M1S48_09275 PF08240 Alcohol dehydrogenase GroES-like domain M1S48_09285 PF01032 FecCD transport family M1S48_09290 PF00005 ABC transporter M1S48_09310 PF14572 Phosphoribosyl synthetase-associated domain M1S48_09310 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase M1S48_09315 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family M1S48_09390 PF00196 Bacterial regulatory proteins, luxR family M1S48_09395 PF01425 Amidase M1S48_09400 PF13533 Biotin-lipoyl like M1S48_09405 PF07690 Major Facilitator Superfamily M1S48_09430 PF01975 Survival protein SurE M1S48_09440 PF02824 TGS domain M1S48_09440 PF13291 ACT domain M1S48_09440 PF04607 Region found in RelA / SpoT proteins M1S48_09490 PF12146 Serine aminopeptidase, S33 M1S48_09495 PF12833 Helix-turn-helix domain M1S48_09495 PF02311 AraC-like ligand binding domain M1S48_09505 PF16527 Two-component sensor protein CpxA, periplasmic domain M1S48_09505 PF00512 His Kinase A (phospho-acceptor) domain M1S48_09505 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M1S48_09505 PF00672 HAMP domain M1S48_09510 PF00072 Response regulator receiver domain M1S48_09510 PF00486 Transcriptional regulatory protein, C terminal M1S48_09515 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion M1S48_09515 PF00529 HlyD membrane-fusion protein of T1SS M1S48_09520 PF00873 AcrB/AcrD/AcrF family M1S48_09525 PF02321 Outer membrane efflux protein M1S48_09530 PF12146 Serine aminopeptidase, S33 M1S48_09535 PF00743 Flavin-binding monooxygenase-like M1S48_09540 PF01593 Flavin containing amine oxidoreductase M1S48_09555 PF01266 FAD dependent oxidoreductase M1S48_09575 PF16970 Type-1 fimbrial protein, A M1S48_09585 PF02753 Pili assembly chaperone PapD, C-terminal domain M1S48_09585 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain M1S48_09590 PF13953 PapC C-terminal domain M1S48_09590 PF13954 PapC N-terminal domain M1S48_09590 PF00577 Outer membrane usher protein M1S48_09595 PF00419 Fimbrial protein M1S48_09605 PF00107 Zinc-binding dehydrogenase M1S48_09605 PF08240 Alcohol dehydrogenase GroES-like domain M1S48_09615 PF00199 Catalase M1S48_09630 PF13091 PLD-like domain M1S48_09645 PF01244 Membrane dipeptidase (Peptidase family M19) M1S48_09650 PF04055 Radical SAM superfamily M1S48_09650 PF13186 Iron-sulfur cluster-binding domain M1S48_09655 PF05402 Coenzyme PQQ synthesis protein D (PqqD) M1S48_09660 PF03070 TENA/THI-4/PQQC family M1S48_09665 PF12706 Beta-lactamase superfamily domain M1S48_09670 PF08042 PqqA family M1S48_09675 PF17941 Polyphosphate kinase C-terminal domain 1 M1S48_09675 PF02503 Polyphosphate kinase middle domain M1S48_09675 PF13090 Polyphosphate kinase C-terminal domain 2 M1S48_09675 PF13089 Polyphosphate kinase N-terminal domain M1S48_09680 PF00149 Calcineurin-like phosphoesterase M1S48_09690 PF00857 Isochorismatase family M1S48_09690 PF00550 Phosphopantetheine attachment site M1S48_09695 PF00106 short chain dehydrogenase M1S48_09700 PF00005 ABC transporter M1S48_09700 PF03459 TOBE domain M1S48_09705 PF00528 Binding-protein-dependent transport system inner membrane component M1S48_09715 PF03459 TOBE domain M1S48_09715 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M1S48_09720 PF00848 Ring hydroxylating alpha subunit (catalytic domain) M1S48_09720 PF00355 Rieske [2Fe-2S] domain M1S48_09725 PF00866 Ring hydroxylating beta subunit M1S48_09730 PF00175 Oxidoreductase NAD-binding domain M1S48_09730 PF00111 2Fe-2S iron-sulfur cluster binding domain M1S48_09730 PF00970 Oxidoreductase FAD-binding domain M1S48_09735 PF12833 Helix-turn-helix domain M1S48_09735 PF14525 AraC-binding-like domain M1S48_09745 PF01613 Flavin reductase like domain M1S48_09760 PF01738 Dienelactone hydrolase family M1S48_09765 PF07690 Major Facilitator Superfamily M1S48_09770 PF06719 AraC-type transcriptional regulator N-terminus M1S48_09770 PF12833 Helix-turn-helix domain M1S48_09795 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M1S48_09795 PF03466 LysR substrate binding domain M1S48_09800 PF01144 Coenzyme A transferase M1S48_09805 PF01144 Coenzyme A transferase M1S48_09810 PF02667 Short chain fatty acid transporter M1S48_09815 PF00108 Thiolase, N-terminal domain M1S48_09815 PF02803 Thiolase, C-terminal domain M1S48_09820 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M1S48_09820 PF03466 LysR substrate binding domain M1S48_09825 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M1S48_09825 PF03466 LysR substrate binding domain M1S48_09840 PF00206 Lyase M1S48_09840 PF10415 Fumarase C C-terminus M1S48_09845 PF07715 TonB-dependent Receptor Plug Domain M1S48_09845 PF00593 TonB dependent receptor M1S48_09850 PF00083 Sugar (and other) transporter M1S48_09865 PF00005 ABC transporter M1S48_09870 PF00528 Binding-protein-dependent transport system inner membrane component M1S48_09875 PF04069 Substrate binding domain of ABC-type glycine betaine transport system M1S48_09890 PF07702 UTRA domain M1S48_09890 PF00392 Bacterial regulatory proteins, gntR family M1S48_09900 PF02525 Flavodoxin-like fold M1S48_09905 PF01638 HxlR-like helix-turn-helix M1S48_09910 PF06445 GyrI-like small molecule binding domain M1S48_09910 PF12833 Helix-turn-helix domain M1S48_09925 PF01925 Sulfite exporter TauE/SafE M1S48_09940 PF04273 Putative phosphatase (DUF442) M1S48_09940 PF00753 Metallo-beta-lactamase superfamily M1S48_09945 PF00158 Sigma-54 interaction domain M1S48_09945 PF00072 Response regulator receiver domain M1S48_09945 PF02954 Bacterial regulatory protein, Fis family M1S48_09950 PF01062 Bestrophin, RFP-TM, chloride channel M1S48_09955 PF00107 Zinc-binding dehydrogenase M1S48_09955 PF08240 Alcohol dehydrogenase GroES-like domain M1S48_09960 PF00106 short chain dehydrogenase M1S48_09965 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain M1S48_09965 PF07992 Pyridine nucleotide-disulphide oxidoreductase M1S48_09970 PF02817 e3 binding domain M1S48_09970 PF00364 Biotin-requiring enzyme M1S48_09970 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) M1S48_09975 PF02780 Transketolase, C-terminal domain M1S48_09975 PF02779 Transketolase, pyrimidine binding domain M1S48_09980 PF00676 Dehydrogenase E1 component M1S48_10000 PF08448 PAS fold M1S48_10000 PF00990 Diguanylate cyclase, GGDEF domain M1S48_10005 PF01264 Chorismate synthase M1S48_10010 PF05175 Methyltransferase small domain M1S48_10015 PF00291 Pyridoxal-phosphate dependent enzyme M1S48_10025 PF17862 AAA+ lid domain M1S48_10025 PF00004 ATPase family associated with various cellular activities (AAA) M1S48_10025 PF01434 Peptidase family M41 M1S48_10035 PF05166 YcgL domain M1S48_10055 PF00570 HRDC domain M1S48_10055 PF01612 3'-5' exonuclease M1S48_10060 PF02132 RecR protein M1S48_10060 PF13662 Toprim domain M1S48_10065 PF02575 YbaB/EbfC DNA-binding family M1S48_10075 PF01053 Cys/Met metabolism PLP-dependent enzyme M1S48_10080 PF00561 alpha/beta hydrolase fold M1S48_10085 PF08241 Methyltransferase domain M1S48_10115 PF01230 HIT domain M1S48_10150 PF00005 ABC transporter M1S48_10155 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion M1S48_10165 PF02684 Lipid-A-disaccharide synthetase M1S48_10170 PF00593 TonB dependent receptor M1S48_10170 PF07715 TonB-dependent Receptor Plug Domain M1S48_10190 PF01925 Sulfite exporter TauE/SafE M1S48_10195 PF00793 DAHP synthetase I family M1S48_10200 PF02654 Cobalamin-5-phosphate synthase M1S48_10215 PF02277 Phosphoribosyltransferase M1S48_10220 PF02283 Cobinamide kinase / cobinamide phosphate guanyltransferase M1S48_10230 PF13419 Haloacid dehalogenase-like hydrolase M1S48_10255 PF07715 TonB-dependent Receptor Plug Domain M1S48_10255 PF00593 TonB dependent receptor M1S48_10270 PF06276 Ferric iron reductase FhuF-like transporter M1S48_10270 PF04183 IucA / IucC family M1S48_10275 PF04183 IucA / IucC family M1S48_10275 PF06276 Ferric iron reductase FhuF-like transporter M1S48_10280 PF07690 Major Facilitator Superfamily M1S48_10285 PF13434 L-lysine 6-monooxygenase (NADPH-requiring) M1S48_10290 PF04183 IucA / IucC family M1S48_10290 PF06276 Ferric iron reductase FhuF-like transporter M1S48_10295 PF04073 Aminoacyl-tRNA editing domain M1S48_10305 PF03109 ABC1 family M1S48_10310 PF00441 Acyl-CoA dehydrogenase, C-terminal domain M1S48_10310 PF02771 Acyl-CoA dehydrogenase, N-terminal domain M1S48_10310 PF02770 Acyl-CoA dehydrogenase, middle domain M1S48_10315 PF00441 Acyl-CoA dehydrogenase, C-terminal domain M1S48_10315 PF02770 Acyl-CoA dehydrogenase, middle domain M1S48_10315 PF02771 Acyl-CoA dehydrogenase, N-terminal domain M1S48_10320 PF00487 Fatty acid desaturase M1S48_10325 PF12852 Cupin M1S48_10325 PF12833 Helix-turn-helix domain M1S48_10330 PF00639 PPIC-type PPIASE domain M1S48_10330 PF09312 SurA N-terminal domain M1S48_10335 PF00216 Bacterial DNA-binding protein M1S48_10350 PF02082 Transcriptional regulator M1S48_10355 PF00266 Aminotransferase class-V M1S48_10360 PF01592 NifU-like N terminal domain M1S48_10365 PF01521 Iron-sulphur cluster biosynthesis M1S48_10370 PF00226 DnaJ domain M1S48_10370 PF07743 HSCB C-terminal oligomerisation domain M1S48_10375 PF00012 Hsp70 protein M1S48_10380 PF00111 2Fe-2S iron-sulfur cluster binding domain M1S48_10385 PF00211 Adenylate and Guanylate cyclase catalytic domain M1S48_10395 PF17757 UvrB interaction domain M1S48_10395 PF00271 Helicase conserved C-terminal domain M1S48_10395 PF00270 DEAD/DEAH box helicase M1S48_10395 PF02559 CarD-like/TRCF domain M1S48_10395 PF03461 TRCF domain M1S48_10415 PF03737 Aldolase/RraA M1S48_10420 PF13460 NAD(P)H-binding M1S48_10425 PF01649 Ribosomal protein S20 M1S48_10435 PF00459 Inositol monophosphatase family M1S48_10450 PF00005 ABC transporter M1S48_10450 PF08352 Oligopeptide/dipeptide transporter, C-terminal region M1S48_10455 PF00528 Binding-protein-dependent transport system inner membrane component M1S48_10460 PF00528 Binding-protein-dependent transport system inner membrane component M1S48_10465 PF01432 Peptidase family M3 M1S48_10485 PF00593 TonB dependent receptor M1S48_10485 PF07715 TonB-dependent Receptor Plug Domain M1S48_10495 PF01618 MotA/TolQ/ExbB proton channel family M1S48_10500 PF02472 Biopolymer transport protein ExbD/TolR M1S48_10505 PF02472 Biopolymer transport protein ExbD/TolR M1S48_10515 PF01274 Malate synthase M1S48_10520 PF03969 AFG1-like ATPase M1S48_10530 PF00743 Flavin-binding monooxygenase-like M1S48_10540 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family M1S48_10550 PF00216 Bacterial DNA-binding protein M1S48_10555 PF00575 S1 RNA binding domain M1S48_10560 PF02224 Cytidylate kinase M1S48_10570 PF14437 MafB19-like deaminase M1S48_10580 PF03167 Uracil DNA glycosylase superfamily M1S48_10590 PF03934 Type II secretion system (T2SS), protein K M1S48_10595 PF07963 Prokaryotic N-terminal methylation motif M1S48_10595 PF11612 Type II secretion system (T2SS), protein J M1S48_10600 PF07963 Prokaryotic N-terminal methylation motif M1S48_10600 PF02501 Type II secretion system (T2SS), protein I M1S48_10615 PF01026 TatD related DNase M1S48_10625 PF09115 DNA polymerase III, delta subunit, C terminal M1S48_10630 PF02348 Cytidylyltransferase M1S48_10635 PF02606 Tetraacyldisaccharide-1-P 4'-kinase M1S48_10640 PF00664 ABC transporter transmembrane region M1S48_10640 PF00005 ABC transporter M1S48_10650 PF01618 MotA/TolQ/ExbB proton channel family M1S48_10655 PF17762 HTH domain found in ParB protein M1S48_10655 PF02195 ParB-like nuclease domain M1S48_10660 PF13614 AAA domain M1S48_10665 PF02527 rRNA small subunit methyltransferase G M1S48_10670 PF00483 Nucleotidyl transferase M1S48_10675 PF01636 Phosphotransferase enzyme family M1S48_10680 PF04453 LPS transport system D M1S48_10680 PF03968 OstA-like protein M1S48_10685 PF00639 PPIC-type PPIASE domain M1S48_10685 PF09312 SurA N-terminal domain M1S48_10690 PF01116 Fructose-bisphosphate aldolase class-II M1S48_10700 PF00162 Phosphoglycerate kinase M1S48_10710 PF02545 Maf-like protein M1S48_10715 PF08007 Cupin superfamily protein M1S48_10730 PF00375 Sodium:dicarboxylate symporter family M1S48_10735 PF06912 Protein of unknown function (DUF1275) M1S48_10740 PF09831 Uncharacterized protein conserved in bacteria (DUF2058) M1S48_10745 PF00664 ABC transporter transmembrane region M1S48_10745 PF00005 ABC transporter M1S48_10755 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term M1S48_10755 PF12833 Helix-turn-helix domain M1S48_10760 PF01597 Glycine cleavage H-protein M1S48_10765 PF02146 Sir2 family M1S48_10770 PF00474 Sodium:solute symporter family M1S48_10775 PF01037 Lrp/AsnC ligand binding domain M1S48_10780 PF00171 Aldehyde dehydrogenase family M1S48_10780 PF01619 Proline dehydrogenase M1S48_10780 PF14850 DNA-binding domain of Proline dehydrogenase M1S48_10780 PF18327 Proline utilization A proline dehydrogenase N-terminal domain M1S48_10785 PF04229 GrpB protein M1S48_10790 PF05958 tRNA (Uracil-5-)-methyltransferase M1S48_10800 PF09992 Phosphodiester glycosidase M1S48_10810 PF04264 YceI-like domain M1S48_10820 PF02780 Transketolase, C-terminal domain M1S48_10820 PF00456 Transketolase, thiamine diphosphate binding domain M1S48_10820 PF02779 Transketolase, pyrimidine binding domain M1S48_10825 PF02773 S-adenosylmethionine synthetase, C-terminal domain M1S48_10825 PF02772 S-adenosylmethionine synthetase, central domain M1S48_10825 PF00438 S-adenosylmethionine synthetase, N-terminal domain M1S48_10845 PF00905 Penicillin binding protein transpeptidase domain M1S48_10860 PF02075 Crossover junction endodeoxyribonuclease RuvC M1S48_10865 PF01256 Carbohydrate kinase M1S48_10865 PF03853 YjeF-related protein N-terminus M1S48_10870 PF08331 Domain of unknown function (DUF1730) M1S48_10875 PF04055 Radical SAM superfamily M1S48_10875 PF06968 Biotin and Thiamin Synthesis associated domain M1S48_10890 PF16970 Type-1 fimbrial protein, A M1S48_10895 PF02753 Pili assembly chaperone PapD, C-terminal domain M1S48_10895 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain M1S48_10900 PF13953 PapC C-terminal domain M1S48_10900 PF00577 Outer membrane usher protein M1S48_10900 PF13954 PapC N-terminal domain M1S48_10920 PF00892 EamA-like transporter family M1S48_10940 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin M1S48_10950 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M1S48_10950 PF03466 LysR substrate binding domain M1S48_10970 PF00440 Bacterial regulatory proteins, tetR family M1S48_10980 PF01709 Transcriptional regulator M1S48_10985 PF01037 Lrp/AsnC ligand binding domain M1S48_10995 PF00005 ABC transporter M1S48_11000 PF00528 Binding-protein-dependent transport system inner membrane component M1S48_11005 PF00528 Binding-protein-dependent transport system inner membrane component M1S48_11020 PF08028 Acyl-CoA dehydrogenase, C-terminal domain M1S48_11020 PF02771 Acyl-CoA dehydrogenase, N-terminal domain M1S48_11030 PF00296 Luciferase-like monooxygenase M1S48_11035 PF03180 NLPA lipoprotein M1S48_11040 PF03180 NLPA lipoprotein M1S48_11045 PF09383 NIL domain M1S48_11045 PF00005 ABC transporter M1S48_11050 PF00528 Binding-protein-dependent transport system inner membrane component M1S48_11055 PF01926 50S ribosome-binding GTPase M1S48_11055 PF06071 Protein of unknown function (DUF933) M1S48_11080 PF03591 AzlC protein M1S48_11085 PF05437 Branched-chain amino acid transport protein (AzlD) M1S48_11095 PF02222 ATP-grasp domain M1S48_11100 PF01909 Nucleotidyltransferase domain M1S48_11100 PF01966 HD domain M1S48_11100 PF08335 GlnD PII-uridylyltransferase M1S48_11105 PF00155 Aminotransferase class I and II M1S48_11115 PF12833 Helix-turn-helix domain M1S48_11115 PF12852 Cupin M1S48_11120 PF00255 Glutathione peroxidase M1S48_11125 PF01641 SelR domain M1S48_11130 PF00155 Aminotransferase class I and II M1S48_11135 PF00375 Sodium:dicarboxylate symporter family M1S48_11140 PF00710 Asparaginase, N-terminal M1S48_11140 PF17763 Glutaminase/Asparaginase C-terminal domain M1S48_11145 PF01336 OB-fold nucleic acid binding domain M1S48_11145 PF17657 Bacterial DNA polymerase III alpha subunit finger domain M1S48_11145 PF07733 Bacterial DNA polymerase III alpha NTPase domain M1S48_11145 PF14579 Helix-hairpin-helix motif M1S48_11145 PF02811 PHP domain M1S48_11150 PF00588 SpoU rRNA Methylase family M1S48_11155 PF00132 Bacterial transferase hexapeptide (six repeats) M1S48_11185 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M1S48_11185 PF03466 LysR substrate binding domain M1S48_11190 PF01758 Sodium Bile acid symporter family M1S48_11195 PF01022 Bacterial regulatory protein, arsR family M1S48_11200 PF03960 ArsC family M1S48_11210 PF13382 Adenine deaminase C-terminal domain M1S48_11210 PF01979 Amidohydrolase family M1S48_11220 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M1S48_11220 PF03466 LysR substrate binding domain M1S48_11230 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin M1S48_11235 PF01177 Asp/Glu/Hydantoin racemase M1S48_11240 PF02668 Taurine catabolism dioxygenase TauD, TfdA family M1S48_11245 PF00528 Binding-protein-dependent transport system inner membrane component M1S48_11250 PF00005 ABC transporter M1S48_11255 PF04069 Substrate binding domain of ABC-type glycine betaine transport system M1S48_11265 PF00083 Sugar (and other) transporter M1S48_11270 PF00296 Luciferase-like monooxygenase M1S48_11275 PF08028 Acyl-CoA dehydrogenase, C-terminal domain M1S48_11275 PF02770 Acyl-CoA dehydrogenase, middle domain M1S48_11275 PF02771 Acyl-CoA dehydrogenase, N-terminal domain M1S48_11285 PF01654 Cytochrome bd terminal oxidase subunit I M1S48_11290 PF02322 Cytochrome bd terminal oxidase subunit II M1S48_11300 PF00392 Bacterial regulatory proteins, gntR family M1S48_11300 PF00155 Aminotransferase class I and II M1S48_11305 PF03466 LysR substrate binding domain M1S48_11305 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M1S48_11320 PF00698 Acyl transferase domain M1S48_11325 PF10620 Phosphoribosyl-dephospho-CoA transferase MdcG M1S48_11335 PF01039 Carboxyl transferase domain M1S48_11340 PF06857 Malonate decarboxylase delta subunit (MdcD) M1S48_11345 PF01874 ATP:dephospho-CoA triphosphoribosyl transferase M1S48_11350 PF16957 Malonate decarboxylase, alpha subunit, transporter M1S48_11355 PF07690 Major Facilitator Superfamily M1S48_11370 PF00392 Bacterial regulatory proteins, gntR family M1S48_11370 PF00155 Aminotransferase class I and II M1S48_11375 PF04172 LrgB-like family M1S48_11380 PF03788 LrgA family M1S48_11385 PF03466 LysR substrate binding domain M1S48_11385 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M1S48_11390 PF02798 Glutathione S-transferase, N-terminal domain M1S48_11390 PF14834 Glutathione S-transferase, C-terminal domain M1S48_11395 PF02798 Glutathione S-transferase, N-terminal domain M1S48_11400 PF03466 LysR substrate binding domain M1S48_11400 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M1S48_11410 PF00581 Rhodanese-like domain M1S48_11415 PF00132 Bacterial transferase hexapeptide (six repeats) M1S48_11425 PF00266 Aminotransferase class-V M1S48_11435 PF01810 LysE type translocator M1S48_11455 PF00497 Bacterial extracellular solute-binding proteins, family 3 M1S48_11460 PF00005 ABC transporter M1S48_11465 PF00528 Binding-protein-dependent transport system inner membrane component M1S48_11470 PF00528 Binding-protein-dependent transport system inner membrane component M1S48_11485 PF00072 Response regulator receiver domain M1S48_11490 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M1S48_11490 PF00512 His Kinase A (phospho-acceptor) domain M1S48_11490 PF09308 LuxQ, periplasmic M1S48_11490 PF00072 Response regulator receiver domain M1S48_11500 PF01037 Lrp/AsnC ligand binding domain M1S48_11500 PF13404 AsnC-type helix-turn-helix domain M1S48_11510 PF00717 Peptidase S24-like M1S48_11545 PF18011 C-terminal domain found in long catalases M1S48_11545 PF00199 Catalase M1S48_11545 PF06628 Catalase-related immune-responsive M1S48_11555 PF02464 Competence-damaged protein M1S48_11555 PF18146 Damage-inducible protein CinA KH domain M1S48_11555 PF00994 Probable molybdopterin binding domain M1S48_11590 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M1S48_11590 PF03466 LysR substrate binding domain M1S48_11620 PF13193 AMP-binding enzyme C-terminal domain M1S48_11620 PF00501 AMP-binding enzyme M1S48_11625 PF00440 Bacterial regulatory proteins, tetR family M1S48_11630 PF02771 Acyl-CoA dehydrogenase, N-terminal domain M1S48_11630 PF00441 Acyl-CoA dehydrogenase, C-terminal domain M1S48_11630 PF02770 Acyl-CoA dehydrogenase, middle domain M1S48_11635 PF01039 Carboxyl transferase domain M1S48_11640 PF00378 Enoyl-CoA hydratase/isomerase M1S48_11645 PF02785 Biotin carboxylase C-terminal domain M1S48_11645 PF18140 Propionyl-coenzyme A carboxylase BT domain M1S48_11645 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain M1S48_11645 PF00364 Biotin-requiring enzyme M1S48_11645 PF00289 Biotin carboxylase, N-terminal domain M1S48_11650 PF00682 HMGL-like M1S48_11655 PF03466 LysR substrate binding domain M1S48_11655 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M1S48_11670 PF02770 Acyl-CoA dehydrogenase, middle domain M1S48_11670 PF12806 Acetyl-CoA dehydrogenase C-terminal like M1S48_11670 PF00441 Acyl-CoA dehydrogenase, C-terminal domain M1S48_11670 PF02771 Acyl-CoA dehydrogenase, N-terminal domain M1S48_11680 PF07690 Major Facilitator Superfamily M1S48_11690 PF01144 Coenzyme A transferase M1S48_11695 PF01144 Coenzyme A transferase M1S48_11700 PF07690 Major Facilitator Superfamily M1S48_11705 PF02770 Acyl-CoA dehydrogenase, middle domain M1S48_11705 PF02771 Acyl-CoA dehydrogenase, N-terminal domain M1S48_11705 PF00441 Acyl-CoA dehydrogenase, C-terminal domain M1S48_11710 PF00378 Enoyl-CoA hydratase/isomerase M1S48_11720 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain M1S48_11720 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain M1S48_11720 PF18321 3-hydroxybutyryl-CoA dehydrogenase reduced Rossmann-fold domain M1S48_11725 PF00108 Thiolase, N-terminal domain M1S48_11725 PF02803 Thiolase, C-terminal domain M1S48_11730 PF09339 IclR helix-turn-helix domain M1S48_11735 PF07690 Major Facilitator Superfamily M1S48_11740 PF03060 Nitronate monooxygenase M1S48_11745 PF00378 Enoyl-CoA hydratase/isomerase M1S48_11750 PF09339 IclR helix-turn-helix domain M1S48_11755 PF02515 CoA-transferase family III M1S48_11760 PF02771 Acyl-CoA dehydrogenase, N-terminal domain M1S48_11760 PF02770 Acyl-CoA dehydrogenase, middle domain M1S48_11760 PF00441 Acyl-CoA dehydrogenase, C-terminal domain M1S48_11765 PF07690 Major Facilitator Superfamily M1S48_11770 PF13419 Haloacid dehalogenase-like hydrolase M1S48_11775 PF00266 Aminotransferase class-V M1S48_11780 PF01266 FAD dependent oxidoreductase M1S48_11785 PF00528 Binding-protein-dependent transport system inner membrane component M1S48_11790 PF00005 ABC transporter M1S48_11790 PF08402 TOBE domain M1S48_11800 PF00392 Bacterial regulatory proteins, gntR family M1S48_11800 PF07702 UTRA domain M1S48_11805 PF01494 FAD binding domain M1S48_11810 PF01614 Bacterial transcriptional regulator M1S48_11810 PF09339 IclR helix-turn-helix domain M1S48_11815 PF02525 Flavodoxin-like fold M1S48_11820 PF03466 LysR substrate binding domain M1S48_11820 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M1S48_11825 PF02627 Carboxymuconolactone decarboxylase family M1S48_11830 PF00171 Aldehyde dehydrogenase family M1S48_11840 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin M1S48_11850 PF00171 Aldehyde dehydrogenase family M1S48_11855 PF00296 Luciferase-like monooxygenase M1S48_11860 PF01613 Flavin reductase like domain M1S48_11865 PF12697 Alpha/beta hydrolase family M1S48_11885 PF01292 Prokaryotic cytochrome b561 M1S48_11890 PF00199 Catalase M1S48_11925 PF03061 Thioesterase superfamily M1S48_11930 PF00132 Bacterial transferase hexapeptide (six repeats) M1S48_11935 PF07848 PaaX-like protein M1S48_11935 PF08223 PaaX-like protein C-terminal domain M1S48_11940 PF00501 AMP-binding enzyme M1S48_11940 PF14535 AMP-binding enzyme C-terminal domain M1S48_11945 PF00108 Thiolase, N-terminal domain M1S48_11945 PF02803 Thiolase, C-terminal domain M1S48_11950 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain M1S48_11950 PF18321 3-hydroxybutyryl-CoA dehydrogenase reduced Rossmann-fold domain M1S48_11950 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain M1S48_11955 PF00378 Enoyl-CoA hydratase/isomerase M1S48_11960 PF00378 Enoyl-CoA hydratase/isomerase M1S48_11965 PF00111 2Fe-2S iron-sulfur cluster binding domain M1S48_11965 PF00175 Oxidoreductase NAD-binding domain M1S48_11965 PF00970 Oxidoreductase FAD-binding domain M1S48_11970 PF01883 Iron-sulfur cluster assembly protein M1S48_11975 PF05138 Phenylacetic acid catabolic protein M1S48_11980 PF06243 Phenylacetic acid degradation B M1S48_11985 PF05138 Phenylacetic acid catabolic protein M1S48_11990 PF00171 Aldehyde dehydrogenase family M1S48_11990 PF01575 MaoC like domain M1S48_11995 PF03313 Serine dehydratase alpha chain M1S48_11995 PF03315 Serine dehydratase beta chain M1S48_12000 PF13520 Amino acid permease M1S48_12005 PF00171 Aldehyde dehydrogenase family M1S48_12010 PF00083 Sugar (and other) transporter M1S48_12020 PF04324 BFD-like [2Fe-2S] binding domain M1S48_12020 PF07992 Pyridine nucleotide-disulphide oxidoreductase M1S48_12030 PF01266 FAD dependent oxidoreductase M1S48_12035 PF05544 Proline racemase M1S48_12040 PF00392 Bacterial regulatory proteins, gntR family M1S48_12050 PF00701 Dihydrodipicolinate synthetase family M1S48_12060 PF00376 MerR family regulatory protein M1S48_12060 PF09278 MerR, DNA binding M1S48_12075 PF02677 Epoxyqueuosine reductase QueH M1S48_12090 PF07690 Major Facilitator Superfamily M1S48_12095 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region M1S48_12105 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M1S48_12105 PF03466 LysR substrate binding domain M1S48_12125 PF05936 Bacterial Type VI secretion, VC_A0110, EvfL, ImpJ, VasE M1S48_12130 PF06812 ImpA, N-terminal, type VI secretion system M1S48_12135 PF00004 ATPase family associated with various cellular activities (AAA) M1S48_12135 PF07724 AAA domain (Cdc48 subfamily) M1S48_12135 PF17871 AAA lid domain M1S48_12135 PF10431 C-terminal, D2-small domain, of ClpB protein M1S48_12150 PF01389 OmpA-like transmembrane domain M1S48_12150 PF00691 OmpA family M1S48_12160 PF06761 Intracellular multiplication and human macrophage-killing M1S48_12160 PF14331 ImcF-related N-terminal domain M1S48_12160 PF06744 Type VI secretion protein IcmF C-terminal M1S48_12175 PF05947 Type VI secretion system, TssF M1S48_12190 PF05943 Type VI secretion protein, EvpB/VC_A0108, tail sheath M1S48_12215 PF00005 ABC transporter M1S48_12220 PF00497 Bacterial extracellular solute-binding proteins, family 3 M1S48_12225 PF01425 Amidase M1S48_12230 PF01402 Ribbon-helix-helix protein, copG family M1S48_12230 PF08753 NikR C terminal nickel binding domain M1S48_12250 PF02525 Flavodoxin-like fold M1S48_12255 PF02785 Biotin carboxylase C-terminal domain M1S48_12255 PF00289 Biotin carboxylase, N-terminal domain M1S48_12255 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain M1S48_12270 PF08240 Alcohol dehydrogenase GroES-like domain M1S48_12270 PF13823 Alcohol dehydrogenase GroES-associated M1S48_12270 PF00107 Zinc-binding dehydrogenase M1S48_12280 PF00440 Bacterial regulatory proteins, tetR family M1S48_12300 PF00654 Voltage gated chloride channel M1S48_12305 PF00289 Biotin carboxylase, N-terminal domain M1S48_12305 PF00364 Biotin-requiring enzyme M1S48_12305 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain M1S48_12305 PF02785 Biotin carboxylase C-terminal domain M1S48_12315 PF07286 Protein of unknown function (DUF1445) M1S48_12320 PF03746 LamB/YcsF family M1S48_12325 PF01566 Natural resistance-associated macrophage protein M1S48_12330 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M1S48_12330 PF03466 LysR substrate binding domain M1S48_12345 PF03527 RHS protein M1S48_12345 PF05593 RHS Repeat M1S48_12350 PF13296 Putative type VI secretion system Rhs element Vgr M1S48_12350 PF10106 Uncharacterized protein conserved in bacteria (DUF2345) M1S48_12350 PF04717 Type VI secretion system, phage-baseplate injector M1S48_12360 PF13419 Haloacid dehalogenase-like hydrolase M1S48_12380 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain M1S48_12380 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain M1S48_12400 PF07690 Major Facilitator Superfamily M1S48_12415 PF03279 Bacterial lipid A biosynthesis acyltransferase M1S48_12420 PF00563 EAL domain M1S48_12420 PF00990 Diguanylate cyclase, GGDEF domain M1S48_12420 PF03707 Bacterial signalling protein N terminal repeat M1S48_12425 PF00892 EamA-like transporter family M1S48_12430 PF01037 Lrp/AsnC ligand binding domain M1S48_12435 PF05188 MutS domain II M1S48_12435 PF05192 MutS domain III M1S48_12435 PF00488 MutS domain V M1S48_12435 PF05190 MutS family domain IV M1S48_12435 PF01624 MutS domain I M1S48_12445 PF11953 Domain of unknown function (DUF3470) M1S48_12445 PF00037 4Fe-4S binding domain M1S48_12455 PF01596 O-methyltransferase M1S48_12465 PF00132 Bacterial transferase hexapeptide (six repeats) M1S48_12470 PF01205 Uncharacterized protein family UPF0029 M1S48_12480 PF00664 ABC transporter transmembrane region M1S48_12480 PF00005 ABC transporter M1S48_12480 PF03412 Peptidase C39 family M1S48_12485 PF02321 Outer membrane efflux protein M1S48_12490 PF00005 ABC transporter M1S48_12490 PF12399 Branched-chain amino acid ATP-binding cassette transporter M1S48_12495 PF03968 OstA-like protein M1S48_12510 PF00571 CBS domain M1S48_12510 PF01380 SIS domain M1S48_12515 PF01406 tRNA synthetases class I (C) catalytic domain M1S48_12515 PF09190 DALR domain M1S48_12540 PF01638 HxlR-like helix-turn-helix M1S48_12545 PF07690 Major Facilitator Superfamily M1S48_12580 PF00313 'Cold-shock' DNA-binding domain M1S48_12585 PF01810 LysE type translocator M1S48_12615 PF02601 Exonuclease VII, large subunit M1S48_12615 PF13742 OB-fold nucleic acid binding domain M1S48_12650 PF09278 MerR, DNA binding M1S48_12650 PF00376 MerR family regulatory protein M1S48_12655 PF00403 Heavy-metal-associated domain M1S48_12660 PF00403 Heavy-metal-associated domain M1S48_12665 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M1S48_12665 PF03466 LysR substrate binding domain M1S48_12675 PF00848 Ring hydroxylating alpha subunit (catalytic domain) M1S48_12675 PF00355 Rieske [2Fe-2S] domain M1S48_12680 PF00866 Ring hydroxylating beta subunit M1S48_12685 PF00970 Oxidoreductase FAD-binding domain M1S48_12685 PF00111 2Fe-2S iron-sulfur cluster binding domain M1S48_12685 PF00175 Oxidoreductase NAD-binding domain M1S48_12690 PF00106 short chain dehydrogenase M1S48_12695 PF03594 Benzoate membrane transport protein M1S48_12700 PF07690 Major Facilitator Superfamily M1S48_12710 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal M1S48_12710 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III M1S48_12715 PF00270 DEAD/DEAH box helicase M1S48_12715 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold M1S48_12715 PF11898 Domain of unknown function (DUF3418) M1S48_12715 PF00271 Helicase conserved C-terminal domain M1S48_12715 PF04408 Helicase associated domain (HA2) M1S48_12720 PF10417 C-terminal domain of 1-Cys peroxiredoxin M1S48_12720 PF00578 AhpC/TSA family M1S48_12740 PF07992 Pyridine nucleotide-disulphide oxidoreductase M1S48_12740 PF13192 Thioredoxin domain M1S48_12750 PF02798 Glutathione S-transferase, N-terminal domain M1S48_12750 PF00043 Glutathione S-transferase, C-terminal domain M1S48_12760 PF02390 Putative methyltransferase M1S48_12765 PF00043 Glutathione S-transferase, C-terminal domain M1S48_12765 PF13417 Glutathione S-transferase, N-terminal domain M1S48_12775 PF13488 Glycine zipper M1S48_12775 PF00691 OmpA family M1S48_12780 PF01979 Amidohydrolase family M1S48_12785 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain M1S48_12785 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain M1S48_12795 PF10672 S-adenosylmethionine-dependent methyltransferase M1S48_12795 PF02926 THUMP domain M1S48_12795 PF01170 Putative RNA methylase family UPF0020 M1S48_12810 PF17871 AAA lid domain M1S48_12810 PF07724 AAA domain (Cdc48 subfamily) M1S48_12810 PF00004 ATPase family associated with various cellular activities (AAA) M1S48_12810 PF10431 C-terminal, D2-small domain, of ClpB protein M1S48_12810 PF02861 Clp amino terminal domain, pathogenicity island component M1S48_12825 PF02566 OsmC-like protein M1S48_12835 PF00027 Cyclic nucleotide-binding domain M1S48_12835 PF13545 Crp-like helix-turn-helix domain M1S48_12860 PF00709 Adenylosuccinate synthetase M1S48_12865 PF13393 Histidyl-tRNA synthetase M1S48_12870 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain M1S48_12870 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain M1S48_12875 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain M1S48_12875 PF02272 DHHA1 domain M1S48_12875 PF01411 tRNA synthetases class II (A) M1S48_12880 PF00696 Amino acid kinase family M1S48_12880 PF01842 ACT domain M1S48_12880 PF13840 ACT domain M1S48_12885 PF02599 Global regulator protein family M1S48_12890 PF01351 Ribonuclease HII M1S48_12900 PF01292 Prokaryotic cytochrome b561 M1S48_12905 PF00962 Adenosine/AMP deaminase M1S48_12910 PF00860 Permease family M1S48_12920 PF00743 Flavin-binding monooxygenase-like M1S48_12925 PF00106 short chain dehydrogenase M1S48_12935 PF02678 Pirin M1S48_12935 PF17954 Quercetinase C-terminal cupin domain M1S48_12940 PF00440 Bacterial regulatory proteins, tetR family M1S48_12940 PF17932 Tetracyclin repressor-like, C-terminal domain M1S48_12950 PF00106 short chain dehydrogenase M1S48_12960 PF13610 DDE domain M1S48_12970 PF00239 Resolvase, N terminal domain M1S48_12970 PF02796 Helix-turn-helix domain of resolvase M1S48_12975 PF00563 EAL domain M1S48_12975 PF11809 Domain of unknown function (DUF3330) M1S48_12985 PF00589 Phage integrase family M1S48_12985 PF13495 Phage integrase, N-terminal SAM-like domain M1S48_12990 PF00583 Acetyltransferase (GNAT) family M1S48_13010 PF00893 Small Multidrug Resistance protein M1S48_13015 PF00809 Pterin binding enzyme M1S48_13035 PF13610 DDE domain M1S48_13040 PF01636 Phosphotransferase enzyme family M1S48_13055 PF13610 DDE domain M1S48_13060 PF02796 Helix-turn-helix domain of resolvase M1S48_13060 PF00239 Resolvase, N terminal domain M1S48_13070 PF13610 DDE domain M1S48_13080 PF00239 Resolvase, N terminal domain M1S48_13080 PF02796 Helix-turn-helix domain of resolvase M1S48_13085 PF13610 DDE domain M1S48_13095 PF04958 Arginine N-succinyltransferase beta subunit M1S48_13100 PF00202 Aminotransferase class-III M1S48_13110 PF00171 Aldehyde dehydrogenase family M1S48_13120 PF07729 FCD domain M1S48_13120 PF00392 Bacterial regulatory proteins, gntR family M1S48_13130 PF00324 Amino acid permease M1S48_13135 PF01266 FAD dependent oxidoreductase M1S48_13140 PF00324 Amino acid permease M1S48_13180 PF03527 RHS protein M1S48_13180 PF05593 RHS Repeat M1S48_13185 PF04717 Type VI secretion system, phage-baseplate injector M1S48_13185 PF10106 Uncharacterized protein conserved in bacteria (DUF2345) M1S48_13185 PF13296 Putative type VI secretion system Rhs element Vgr M1S48_13205 PF03180 NLPA lipoprotein M1S48_13210 PF05987 Bacterial protein of unknown function (DUF898) M1S48_13225 PF00724 NADH:flavin oxidoreductase / NADH oxidase family M1S48_13225 PF07992 Pyridine nucleotide-disulphide oxidoreductase M1S48_13230 PF00764 Arginosuccinate synthase M1S48_13235 PF00563 EAL domain M1S48_13235 PF01590 GAF domain M1S48_13235 PF00990 Diguanylate cyclase, GGDEF domain M1S48_13235 PF00360 Phytochrome region M1S48_13240 PF01979 Amidohydrolase family M1S48_13245 PF00929 Exonuclease M1S48_13255 PF00593 TonB dependent receptor M1S48_13255 PF07715 TonB-dependent Receptor Plug Domain M1S48_13260 PF00724 NADH:flavin oxidoreductase / NADH oxidase family M1S48_13260 PF07992 Pyridine nucleotide-disulphide oxidoreductase M1S48_13265 PF08352 Oligopeptide/dipeptide transporter, C-terminal region M1S48_13265 PF00005 ABC transporter M1S48_13270 PF12911 N-terminal TM domain of oligopeptide transport permease C M1S48_13270 PF00528 Binding-protein-dependent transport system inner membrane component M1S48_13275 PF00528 Binding-protein-dependent transport system inner membrane component M1S48_13280 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle M1S48_13285 PF01476 LysM domain M1S48_13285 PF01464 Transglycosylase SLT domain M1S48_13285 PF01476 LysM domain M1S48_13285 PF01464 Transglycosylase SLT domain M1S48_13290 PF00929 Exonuclease M1S48_13300 PF09297 NADH pyrophosphatase zinc ribbon domain M1S48_13300 PF00293 NUDIX domain M1S48_13310 PF04972 BON domain M1S48_13315 PF02021 Uncharacterised protein family UPF0102 M1S48_13320 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases M1S48_13330 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M1S48_13330 PF03466 LysR substrate binding domain M1S48_13335 PF01810 LysE type translocator M1S48_13345 PF13411 MerR HTH family regulatory protein M1S48_13355 PF01494 FAD binding domain M1S48_13360 PF01494 FAD binding domain M1S48_13365 PF05195 Aminopeptidase P, N-terminal domain M1S48_13365 PF00557 Metallopeptidase family M24 M1S48_13405 PF08019 Phosphoethanolamine transferase EptA/EptB M1S48_13405 PF00884 Sulfatase M1S48_13450 PF01476 LysM domain M1S48_13450 PF08525 Opacity-associated protein A N-terminal motif M1S48_13450 PF01551 Peptidase family M23 M1S48_13775 PF01812 5-formyltetrahydrofolate cyclo-ligase family M1S48_13780 PF00691 OmpA family M1S48_13780 PF04355 SmpA / OmlA family M1S48_13785 PF05662 Coiled stalk of trimeric autotransporter adhesin M1S48_13785 PF05658 Head domain of trimeric autotransporter adhesin M1S48_13785 PF13018 Extended Signal Peptide of Type V secretion system M1S48_13785 PF03895 YadA-like membrane anchor domain M1S48_13790 PF05362 Lon protease (S16) C-terminal proteolytic domain M1S48_13790 PF00004 ATPase family associated with various cellular activities (AAA) M1S48_13790 PF02190 ATP-dependent protease La (LON) substrate-binding domain M1S48_13795 PF02590 Predicted SPOUT methyltransferase M1S48_13800 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase M1S48_13810 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain M1S48_13810 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase M1S48_13815 PF04060 Putative Fe-S cluster M1S48_13820 PF10576 Iron-sulfur binding domain of endonuclease III M1S48_13820 PF00633 Helix-hairpin-helix motif M1S48_13820 PF00730 HhH-GPD superfamily base excision DNA repair protein M1S48_13830 PF05191 Adenylate kinase, active site lid M1S48_13845 PF03717 Penicillin-binding Protein dimerisation domain M1S48_13845 PF00905 Penicillin binding protein transpeptidase domain M1S48_13860 PF02492 CobW/HypB/UreG, nucleotide-binding domain M1S48_13865 PF01730 UreF M1S48_13870 PF05194 UreE urease accessory protein, C-terminal domain M1S48_13870 PF02814 UreE urease accessory protein, N-terminal domain M1S48_13875 PF01979 Amidohydrolase family M1S48_13875 PF00449 Urease alpha-subunit, N-terminal domain M1S48_13880 PF00699 Urease beta subunit M1S48_13885 PF00547 Urease, gamma subunit M1S48_13890 PF01774 UreD urease accessory protein M1S48_13905 PF00463 Isocitrate lyase family M1S48_13910 PF03466 LysR substrate binding domain M1S48_13910 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M1S48_13915 PF03471 Transporter associated domain M1S48_13915 PF01595 Cyclin M transmembrane N-terminal domain M1S48_13915 PF00571 CBS domain M1S48_13920 PF03600 Citrate transporter M1S48_13935 PF00009 Elongation factor Tu GTP binding domain M1S48_13940 PF01507 Phosphoadenosine phosphosulfate reductase family M1S48_13950 PF14052 Capsule assembly protein Wzi M1S48_13955 PF00152 tRNA synthetases class II (D, K and N) M1S48_13955 PF01336 OB-fold nucleic acid binding domain M1S48_13970 PF00301 Rubredoxin M1S48_13975 PF07992 Pyridine nucleotide-disulphide oxidoreductase M1S48_13975 PF18113 Rubredoxin binding C-terminal domain M1S48_13980 PF00561 alpha/beta hydrolase fold M1S48_13985 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M1S48_13985 PF03466 LysR substrate binding domain M1S48_13995 PF13090 Polyphosphate kinase C-terminal domain 2 M1S48_13995 PF02503 Polyphosphate kinase middle domain M1S48_13995 PF17941 Polyphosphate kinase C-terminal domain 1 M1S48_13995 PF13089 Polyphosphate kinase N-terminal domain M1S48_14000 PF00912 Transglycosylase M1S48_14005 PF01694 Rhomboid family M1S48_14015 PF00005 ABC transporter M1S48_14020 PF13472 GDSL-like Lipase/Acylhydrolase family M1S48_14025 PF00484 Carbonic anhydrase M1S48_14030 PF00561 alpha/beta hydrolase fold M1S48_14040 PF07715 TonB-dependent Receptor Plug Domain M1S48_14040 PF00593 TonB dependent receptor M1S48_14045 PF01521 Iron-sulphur cluster biosynthesis M1S48_14045 PF01106 NifU-like domain M1S48_14055 PF00884 Sulfatase M1S48_14060 PF03781 Sulfatase-modifying factor enzyme 1 M1S48_14075 PF00291 Pyridoxal-phosphate dependent enzyme M1S48_14080 PF01384 Phosphate transporter family M1S48_14085 PF02965 Vitamin B12 dependent methionine synthase, activation domain M1S48_14085 PF02607 B12 binding domain M1S48_14085 PF02310 B12 binding domain M1S48_14085 PF02574 Homocysteine S-methyltransferase M1S48_14085 PF00809 Pterin binding enzyme M1S48_14090 PF02779 Transketolase, pyrimidine binding domain M1S48_14090 PF02780 Transketolase, C-terminal domain M1S48_14095 PF00456 Transketolase, thiamine diphosphate binding domain M1S48_14100 PF07690 Major Facilitator Superfamily M1S48_14110 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M1S48_14110 PF03466 LysR substrate binding domain M1S48_14120 PF01263 Aldose 1-epimerase M1S48_14125 PF07690 Major Facilitator Superfamily M1S48_14130 PF02311 AraC-like ligand binding domain M1S48_14130 PF12833 Helix-turn-helix domain M1S48_14135 PF04960 Glutaminase M1S48_14140 PF01327 Polypeptide deformylase M1S48_14145 PF07690 Major Facilitator Superfamily M1S48_14155 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain M1S48_14155 PF00205 Thiamine pyrophosphate enzyme, central domain M1S48_14155 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain M1S48_14160 PF00171 Aldehyde dehydrogenase family M1S48_14165 PF01958 Domain of unknown function DUF108 M1S48_14165 PF03447 Homoserine dehydrogenase, NAD binding domain M1S48_14175 PF12697 Alpha/beta hydrolase family M1S48_14185 PF07690 Major Facilitator Superfamily M1S48_14190 PF14759 Reductase C-terminal M1S48_14190 PF07992 Pyridine nucleotide-disulphide oxidoreductase M1S48_14195 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily M1S48_14205 PF00355 Rieske [2Fe-2S] domain M1S48_14215 PF00355 Rieske [2Fe-2S] domain M1S48_14220 PF09339 IclR helix-turn-helix domain M1S48_14220 PF01614 Bacterial transcriptional regulator M1S48_14235 PF00378 Enoyl-CoA hydratase/isomerase M1S48_14245 PF00535 Glycosyl transferase family 2 M1S48_14250 PF01522 Polysaccharide deacetylase M1S48_14250 PF14883 Hypothetical glycosyl hydrolase family 13 M1S48_14255 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase M1S48_14260 PF07152 YaeQ protein M1S48_14265 PF00375 Sodium:dicarboxylate symporter family M1S48_14270 PF02492 CobW/HypB/UreG, nucleotide-binding domain M1S48_14270 PF07683 Cobalamin synthesis protein cobW C-terminal domain M1S48_14280 PF03061 Thioesterase superfamily M1S48_14290 PF02028 BCCT, betaine/carnitine/choline family transporter M1S48_14295 PF02028 BCCT, betaine/carnitine/choline family transporter M1S48_14300 PF13977 BetI-type transcriptional repressor, C-terminal M1S48_14300 PF00440 Bacterial regulatory proteins, tetR family M1S48_14305 PF00171 Aldehyde dehydrogenase family M1S48_14310 PF05199 GMC oxidoreductase M1S48_14310 PF00732 GMC oxidoreductase M1S48_14315 PF06039 Malate:quinone oxidoreductase (Mqo) M1S48_14325 PF02574 Homocysteine S-methyltransferase M1S48_14330 PF13520 Amino acid permease M1S48_14355 PF00701 Dihydrodipicolinate synthetase family M1S48_14360 PF00083 Sugar (and other) transporter M1S48_14430 PF10544 T5orf172 domain M1S48_14435 PF13614 AAA domain M1S48_14455 PF00905 Penicillin binding protein transpeptidase domain M1S48_14535 PF02768 DNA polymerase III beta subunit, C-terminal domain M1S48_14535 PF00712 DNA polymerase III beta subunit, N-terminal domain M1S48_14535 PF02767 DNA polymerase III beta subunit, central domain M1S48_14575 PF05016 ParE toxin of type II toxin-antitoxin system, parDE M1S48_14730 PF07007 Lysozyme inhibitor LprI M1S48_14775 PF01695 IstB-like ATP binding protein M1S48_14785 PF00145 C-5 cytosine-specific DNA methylase M1S48_14830 PF01381 Helix-turn-helix M1S48_14830 PF00717 Peptidase S24-like M1S48_14865 PF00929 Exonuclease M1S48_14940 PF07690 Major Facilitator Superfamily M1S48_14945 PF13533 Biotin-lipoyl like M1S48_14950 PF03061 Thioesterase superfamily M1S48_14955 PF00490 Delta-aminolevulinic acid dehydratase M1S48_14960 PF01266 FAD dependent oxidoreductase M1S48_14965 PF08338 Domain of unknown function (DUF1731) M1S48_14965 PF01370 NAD dependent epimerase/dehydratase family M1S48_14985 PF00149 Calcineurin-like phosphoesterase M1S48_14985 PF12320 Type 5 capsule protein repressor C-terminal domain M1S48_14995 PF01168 Alanine racemase, N-terminal domain M1S48_15000 PF00437 Type II/IV secretion system protein M1S48_15005 PF00437 Type II/IV secretion system protein M1S48_15010 PF01475 Ferric uptake regulator family M1S48_15015 PF04355 SmpA / OmlA family M1S48_15020 PF03658 RnfH family Ubiquitin M1S48_15030 PF01814 Hemerythrin HHE cation binding domain M1S48_15035 PF13230 Glutamine amidotransferases class-II M1S48_15050 PF00696 Amino acid kinase family M1S48_15055 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I M1S48_15055 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II M1S48_15055 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III M1S48_15055 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain M1S48_15060 PF00692 dUTPase M1S48_15065 PF00580 UvrD/REP helicase N-terminal domain M1S48_15065 PF13361 UvrD-like helicase C-terminal domain M1S48_15070 PF13488 Glycine zipper M1S48_15070 PF00691 OmpA family M1S48_15075 PF01553 Acyltransferase M1S48_15085 PF03775 Septum formation inhibitor MinC, C-terminal domain M1S48_15090 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain M1S48_15095 PF03776 Septum formation topological specificity factor MinE M1S48_15110 PF01810 LysE type translocator M1S48_15115 PF17854 FtsK alpha domain M1S48_15115 PF09397 Ftsk gamma domain M1S48_15115 PF13491 4TM region of DNA translocase FtsK/SpoIIIE M1S48_15115 PF01580 FtsK/SpoIIIE family M1S48_15120 PF07992 Pyridine nucleotide-disulphide oxidoreductase M1S48_15125 PF03588 Leucyl/phenylalanyl-tRNA protein transferase M1S48_15130 PF04377 Arginine-tRNA-protein transferase, C terminus M1S48_15130 PF04376 Arginine-tRNA-protein transferase, N terminus M1S48_15135 PF00583 Acetyltransferase (GNAT) family M1S48_15150 PF03143 Elongation factor Tu C-terminal domain M1S48_15150 PF03144 Elongation factor Tu domain 2 M1S48_15150 PF00009 Elongation factor Tu GTP binding domain M1S48_15155 PF14492 Elongation Factor G, domain II M1S48_15155 PF00679 Elongation factor G C-terminus M1S48_15155 PF03144 Elongation factor Tu domain 2 M1S48_15155 PF00009 Elongation factor Tu GTP binding domain M1S48_15155 PF03764 Elongation factor G, domain IV M1S48_15160 PF00177 Ribosomal protein S7p/S5e M1S48_15165 PF00164 Ribosomal protein S12/S23 M1S48_15175 PF00109 Beta-ketoacyl synthase, N-terminal domain M1S48_15175 PF02801 Beta-ketoacyl synthase, C-terminal domain M1S48_15180 PF03653 Uncharacterised protein family (UPF0093) M1S48_15185 PF02678 Pirin M1S48_15185 PF05726 Pirin C-terminal cupin domain M1S48_15195 PF00795 Carbon-nitrogen hydrolase M1S48_15195 PF02540 NAD synthase M1S48_15210 PF00970 Oxidoreductase FAD-binding domain M1S48_15210 PF00111 2Fe-2S iron-sulfur cluster binding domain M1S48_15210 PF00175 Oxidoreductase NAD-binding domain M1S48_15215 PF00171 Aldehyde dehydrogenase family M1S48_15220 PF00848 Ring hydroxylating alpha subunit (catalytic domain) M1S48_15220 PF00355 Rieske [2Fe-2S] domain M1S48_15225 PF07859 alpha/beta hydrolase fold M1S48_15230 PF02028 BCCT, betaine/carnitine/choline family transporter M1S48_15235 PF00180 Isocitrate/isopropylmalate dehydrogenase M1S48_15240 PF03466 LysR substrate binding domain M1S48_15240 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M1S48_15260 PF00037 4Fe-4S binding domain M1S48_15265 PF01467 Cytidylyltransferase-like M1S48_15270 PF01668 SmpB protein M1S48_15275 PF03358 NADPH-dependent FMN reductase M1S48_15280 PF02578 Multi-copper polyphenol oxidoreductase laccase M1S48_15285 PF00849 RNA pseudouridylate synthase M1S48_15285 PF01479 S4 domain M1S48_15290 PF13525 Outer membrane lipoprotein M1S48_15295 PF08275 DNA primase catalytic core, N-terminal domain M1S48_15295 PF10410 DnaB-helicase binding domain of primase M1S48_15295 PF01807 CHC2 zinc finger M1S48_15295 PF08278 DNA primase DnaG DnaB-binding M1S48_15300 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain M1S48_15300 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain M1S48_15300 PF01488 Shikimate / quinate 5-dehydrogenase M1S48_15310 PF03550 Outer membrane lipoprotein LolB M1S48_15315 PF08544 GHMP kinases C terminal M1S48_15315 PF00288 GHMP kinases N terminal domain M1S48_15340 PF14572 Phosphoribosyl synthetase-associated domain M1S48_15340 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase M1S48_15345 PF01386 Ribosomal L25p family M1S48_15350 PF01195 Peptidyl-tRNA hydrolase M1S48_15355 PF02261 Aspartate decarboxylase M1S48_15370 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase M1S48_15380 PF03070 TENA/THI-4/PQQC family M1S48_15380 PF02581 Thiamine monophosphate synthase M1S48_15380 PF08543 Phosphomethylpyrimidine kinase M1S48_15385 PF04972 BON domain M1S48_15385 PF01476 LysM domain M1S48_15390 PF00550 Phosphopantetheine attachment site M1S48_15400 PF00698 Acyl transferase domain M1S48_15405 PF01783 Ribosomal L32p protein family M1S48_15410 PF02620 Large ribosomal RNA subunit accumulation protein YceD M1S48_15415 PF04315 Elongation factor P hydroxylase M1S48_15420 PF01300 Telomere recombination M1S48_15425 PF02616 Segregation and condensation protein ScpA M1S48_15430 PF04079 Segregation and condensation complex subunit ScpB M1S48_15435 PF01479 S4 domain M1S48_15435 PF00849 RNA pseudouridylate synthase M1S48_15450 PF00155 Aminotransferase class I and II M1S48_15455 PF00202 Aminotransferase class-III M1S48_15455 PF06968 Biotin and Thiamin Synthesis associated domain M1S48_15455 PF04055 Radical SAM superfamily M1S48_15460 PF08241 Methyltransferase domain M1S48_15460 PF12697 Alpha/beta hydrolase family M1S48_15465 PF02358 Trehalose-phosphatase M1S48_15470 PF00982 Glycosyltransferase family 20 M1S48_15475 PF07690 Major Facilitator Superfamily M1S48_15480 PF00210 Ferritin-like domain M1S48_15485 PF03119 NAD-dependent DNA ligase C4 zinc finger domain M1S48_15485 PF03120 NAD-dependent DNA ligase OB-fold domain M1S48_15485 PF01653 NAD-dependent DNA ligase adenylation domain M1S48_15485 PF00533 BRCA1 C Terminus (BRCT) domain M1S48_15485 PF12826 Helix-hairpin-helix motif M1S48_15495 PF02463 RecF/RecN/SMC N terminal domain M1S48_15495 PF06470 SMC proteins Flexible Hinge Domain M1S48_15505 PF01925 Sulfite exporter TauE/SafE M1S48_15515 PF03309 Type III pantothenate kinase M1S48_15520 PF00448 SRP54-type protein, GTPase domain M1S48_15520 PF02881 SRP54-type protein, helical bundle domain M1S48_15520 PF02978 Signal peptide binding domain M1S48_15530 PF01207 Dihydrouridine synthase (Dus) M1S48_15560 PF00692 dUTPase M1S48_15575 PF01048 Phosphorylase superfamily M1S48_15580 PF10609 NUBPL iron-transfer P-loop NTPase M1S48_15590 PF01588 Putative tRNA binding domain M1S48_15590 PF09334 tRNA synthetases class I (M) M1S48_15615 PF13533 Biotin-lipoyl like M1S48_15620 PF00291 Pyridoxal-phosphate dependent enzyme M1S48_15635 PF05552 Conserved TM helix M1S48_15650 PF00970 Oxidoreductase FAD-binding domain M1S48_15650 PF00175 Oxidoreductase NAD-binding domain M1S48_15655 PF03466 LysR substrate binding domain M1S48_15655 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M1S48_15660 PF00313 'Cold-shock' DNA-binding domain M1S48_15670 PF00361 Proton-conducting membrane transporter M1S48_15675 PF00361 Proton-conducting membrane transporter M1S48_15680 PF00361 Proton-conducting membrane transporter M1S48_15680 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus M1S48_15685 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L M1S48_15690 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 M1S48_15695 PF12838 4Fe-4S dicluster domain M1S48_15700 PF00146 NADH dehydrogenase M1S48_15705 PF00384 Molybdopterin oxidoreductase M1S48_15705 PF04879 Molybdopterin oxidoreductase Fe4S4 domain M1S48_15705 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region M1S48_15710 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit M1S48_15710 PF10531 SLBB domain M1S48_15710 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region M1S48_15720 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit M1S48_15720 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit M1S48_15725 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit M1S48_15730 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 M1S48_15735 PF17151 Periplasmic sensor domain M1S48_15735 PF00990 Diguanylate cyclase, GGDEF domain M1S48_15745 PF00512 His Kinase A (phospho-acceptor) domain M1S48_15745 PF00672 HAMP domain M1S48_15745 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M1S48_15750 PF00486 Transcriptional regulatory protein, C terminal M1S48_15750 PF00072 Response regulator receiver domain M1S48_15760 PF02867 Ribonucleotide reductase, barrel domain M1S48_15760 PF00317 Ribonucleotide reductase, all-alpha domain M1S48_15760 PF03477 ATP cone domain M1S48_15770 PF00268 Ribonucleotide reductase, small chain M1S48_15780 PF00672 HAMP domain M1S48_15780 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M1S48_15780 PF00512 His Kinase A (phospho-acceptor) domain M1S48_15780 PF13755 Sensor N-terminal transmembrane domain M1S48_15780 PF13756 Stimulus-sensing domain M1S48_15850 PF13360 PQQ-like domain M1S48_15850 PF01011 PQQ enzyme repeat M1S48_15875 PF02567 Phenazine biosynthesis-like protein M1S48_15900 PF01613 Flavin reductase like domain M1S48_15905 PF08267 Cobalamin-independent synthase, N-terminal domain M1S48_15905 PF01717 Cobalamin-independent synthase, Catalytic domain M1S48_15915 PF03466 LysR substrate binding domain M1S48_15915 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M1S48_15920 PF01810 LysE type translocator M1S48_15930 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term M1S48_15930 PF12833 Helix-turn-helix domain M1S48_15935 PF07687 Peptidase dimerisation domain M1S48_15935 PF01546 Peptidase family M20/M25/M40 M1S48_15945 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M1S48_15945 PF03466 LysR substrate binding domain M1S48_15950 PF07690 Major Facilitator Superfamily M1S48_15960 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M1S48_15960 PF03466 LysR substrate binding domain M1S48_15965 PF00890 FAD binding domain M1S48_15965 PF14537 Cytochrome c3 M1S48_15975 PF02515 CoA-transferase family III M1S48_15980 PF07690 Major Facilitator Superfamily M1S48_15985 PF00441 Acyl-CoA dehydrogenase, C-terminal domain M1S48_15985 PF02770 Acyl-CoA dehydrogenase, middle domain M1S48_15985 PF02771 Acyl-CoA dehydrogenase, N-terminal domain M1S48_15990 PF03466 LysR substrate binding domain M1S48_15990 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M1S48_15995 PF00107 Zinc-binding dehydrogenase M1S48_15995 PF08240 Alcohol dehydrogenase GroES-like domain M1S48_16000 PF00962 Adenosine/AMP deaminase M1S48_16025 PF02445 Quinolinate synthetase A protein M1S48_16030 PF01960 ArgJ family M1S48_16035 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain M1S48_16035 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain M1S48_16040 PF00893 Small Multidrug Resistance protein M1S48_16050 PF05275 Copper resistance protein B precursor (CopB) M1S48_16055 PF07732 Multicopper oxidase M1S48_16055 PF00394 Multicopper oxidase M1S48_16055 PF07731 Multicopper oxidase M1S48_16070 PF00834 Ribulose-phosphate 3 epimerase family M1S48_16080 PF00756 Putative esterase M1S48_16090 PF04445 Putative SAM-dependent methyltransferase M1S48_16095 PF00814 Glycoprotease family M1S48_16100 PF00132 Bacterial transferase hexapeptide (six repeats) M1S48_16105 PF00293 NUDIX domain M1S48_16145 PF04715 Anthranilate synthase component I, N terminal region M1S48_16145 PF00425 chorismate binding enzyme M1S48_16150 PF00155 Aminotransferase class I and II M1S48_16155 PF00815 Histidinol dehydrogenase M1S48_16160 PF01634 ATP phosphoribosyltransferase M1S48_16165 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) M1S48_16170 PF01722 BolA-like protein M1S48_16175 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein M1S48_16180 PF00309 Sigma-54 factor, Activator interacting domain (AID) M1S48_16180 PF04963 Sigma-54 factor, core binding domain M1S48_16180 PF04552 Sigma-54, DNA binding domain M1S48_16225 PF00795 Carbon-nitrogen hydrolase M1S48_16235 PF01047 MarR family M1S48_16245 PF00437 Type II/IV secretion system protein M1S48_16265 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain M1S48_16265 PF00476 DNA polymerase family A M1S48_16265 PF01612 3'-5' exonuclease M1S48_16265 PF01367 5'-3' exonuclease, C-terminal SAM fold M1S48_16270 PF02325 YGGT family M1S48_16275 PF03807 NADP oxidoreductase coenzyme F420-dependent M1S48_16275 PF14748 Pyrroline-5-carboxylate reductase dimerisation M1S48_16280 PF01171 PP-loop family M1S48_16280 PF09179 TilS substrate binding domain M1S48_16280 PF11734 TilS substrate C-terminal domain M1S48_16285 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit M1S48_16290 PF02541 Ppx/GppA phosphatase family M1S48_16295 PF00085 Thioredoxin M1S48_16300 PF07497 Rho termination factor, RNA-binding domain M1S48_16300 PF07498 Rho termination factor, N-terminal domain M1S48_16300 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain M1S48_16315 PF00216 Bacterial DNA-binding protein M1S48_16320 PF03483 B3/4 domain M1S48_16320 PF03484 tRNA synthetase B5 domain M1S48_16320 PF03147 Ferredoxin-fold anticodon binding domain M1S48_16320 PF01588 Putative tRNA binding domain M1S48_16320 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain M1S48_16325 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain M1S48_16325 PF01409 tRNA synthetases class II core domain (F) M1S48_16345 PF00453 Ribosomal protein L20 M1S48_16350 PF01632 Ribosomal protein L35 M1S48_16360 PF07690 Major Facilitator Superfamily M1S48_16365 PF09335 SNARE associated Golgi protein M1S48_16370 PF02798 Glutathione S-transferase, N-terminal domain M1S48_16370 PF00043 Glutathione S-transferase, C-terminal domain M1S48_16375 PF05198 Translation initiation factor IF-3, N-terminal domain M1S48_16375 PF00707 Translation initiation factor IF-3, C-terminal domain M1S48_16380 PF03129 Anticodon binding domain M1S48_16380 PF02824 TGS domain M1S48_16380 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) M1S48_16380 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain M1S48_16385 PF00501 AMP-binding enzyme M1S48_16385 PF13193 AMP-binding enzyme C-terminal domain M1S48_16390 PF04751 Protein of unknown function (DUF615) M1S48_16395 PF00381 PTS HPr component phosphorylation site M1S48_16400 PF03668 P-loop ATPase protein family M1S48_16405 PF02569 Pantoate-beta-alanine ligase M1S48_16410 PF02548 Ketopantoate hydroxymethyltransferase M1S48_16415 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) M1S48_16420 PF01743 Poly A polymerase head domain M1S48_16420 PF12626 Polymerase A arginine-rich C-terminus M1S48_16420 PF12627 Probable RNA and SrmB- binding site of polymerase A M1S48_16430 PF03819 MazG nucleotide pyrophosphohydrolase domain M1S48_16440 PF13291 ACT domain M1S48_16440 PF04607 Region found in RelA / SpoT proteins M1S48_16440 PF02824 TGS domain M1S48_16445 PF05958 tRNA (Uracil-5-)-methyltransferase M1S48_16455 PF00291 Pyridoxal-phosphate dependent enzyme M1S48_16460 PF00672 HAMP domain M1S48_16460 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M1S48_16460 PF00512 His Kinase A (phospho-acceptor) domain M1S48_16460 PF01627 Hpt domain M1S48_16460 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) M1S48_16460 PF00072 Response regulator receiver domain M1S48_16465 PF00378 Enoyl-CoA hydratase/isomerase M1S48_16470 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase M1S48_16470 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase M1S48_16475 PF01261 Xylose isomerase-like TIM barrel M1S48_16485 PF00106 short chain dehydrogenase M1S48_16490 PF02233 NAD(P) transhydrogenase beta subunit M1S48_16495 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch M1S48_16500 PF01262 Alanine dehydrogenase/PNT, C-terminal domain M1S48_16500 PF05222 Alanine dehydrogenase/PNT, N-terminal domain M1S48_16505 PF00892 EamA-like transporter family M1S48_16515 PF07690 Major Facilitator Superfamily M1S48_16520 PF01207 Dihydrouridine synthase (Dus) M1S48_16530 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M1S48_16530 PF03466 LysR substrate binding domain M1S48_16540 PF00899 ThiF family M1S48_16550 PF00694 Aconitase C-terminal domain M1S48_16550 PF00330 Aconitase family (aconitate hydratase) M1S48_16555 PF01026 TatD related DNase M1S48_16570 PF03144 Elongation factor Tu domain 2 M1S48_16570 PF16658 Class II release factor RF3, C-terminal domain M1S48_16570 PF00009 Elongation factor Tu GTP binding domain M1S48_16590 PF00990 Diguanylate cyclase, GGDEF domain M1S48_16590 PF00563 EAL domain M1S48_16590 PF03707 Bacterial signalling protein N terminal repeat M1S48_16595 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain M1S48_16595 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain M1S48_16600 PF10369 Small subunit of acetolactate synthase M1S48_16605 PF00205 Thiamine pyrophosphate enzyme, central domain M1S48_16605 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain M1S48_16605 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain M1S48_16615 PF08264 Anticodon-binding domain of tRNA M1S48_16615 PF00133 tRNA synthetases class I (I, L, M and V) M1S48_16615 PF13603 Leucyl-tRNA synthetase, Domain 2 M1S48_16615 PF09334 tRNA synthetases class I (M) M1S48_16630 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion M1S48_16635 PF02687 FtsX-like permease family M1S48_16635 PF00005 ABC transporter M1S48_16635 PF12704 MacB-like periplasmic core domain M1S48_16640 PF02321 Outer membrane efflux protein M1S48_16655 PF00929 Exonuclease M1S48_16660 PF03193 RsgA GTPase M1S48_16670 PF00462 Glutaredoxin M1S48_16675 PF02556 Preprotein translocase subunit SecB M1S48_16690 PF00109 Beta-ketoacyl synthase, N-terminal domain M1S48_16690 PF02801 Beta-ketoacyl synthase, C-terminal domain M1S48_16705 PF00109 Beta-ketoacyl synthase, N-terminal domain M1S48_16705 PF02801 Beta-ketoacyl synthase, C-terminal domain M1S48_16715 PF04820 Tryptophan halogenase M1S48_16735 PF00221 Aromatic amino acid lyase M1S48_16760 PF00550 Phosphopantetheine attachment site M1S48_16765 PF00550 Phosphopantetheine attachment site M1S48_16780 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal M1S48_16780 PF01926 50S ribosome-binding GTPase M1S48_16785 PF13360 PQQ-like domain M1S48_16795 PF13393 Histidyl-tRNA synthetase M1S48_16795 PF03129 Anticodon binding domain M1S48_16800 PF04551 GcpE protein M1S48_16805 PF13464 Domain of unknown function (DUF4115) M1S48_16815 PF04055 Radical SAM superfamily M1S48_16820 PF00334 Nucleoside diphosphate kinase M1S48_16825 PF04384 Iron-sulphur cluster assembly M1S48_16830 PF01569 PAP2 superfamily M1S48_16835 PF00534 Glycosyl transferases group 1 M1S48_16835 PF13439 Glycosyltransferase Family 4 M1S48_16840 PF17804 Tail specific protease N-terminal domain M1S48_16840 PF03572 Peptidase family S41 M1S48_16840 PF00595 PDZ domain M1S48_16840 PF11818 C-terminal domain of tail specific protease (DUF3340) M1S48_16845 PF00933 Glycosyl hydrolase family 3 N terminal domain M1S48_16855 PF00561 alpha/beta hydrolase fold M1S48_16860 PF00171 Aldehyde dehydrogenase family M1S48_16865 PF00171 Aldehyde dehydrogenase family M1S48_16870 PF01202 Shikimate kinase M1S48_16875 PF02447 GntP family permease M1S48_16880 PF01081 KDPG and KHG aldolase M1S48_16885 PF00920 Dehydratase family M1S48_16890 PF00871 Acetokinase family M1S48_16895 PF07085 DRTGG domain M1S48_16895 PF01515 Phosphate acetyl/butaryl transferase M1S48_16900 PF05681 Fumarate hydratase (Fumerase) M1S48_16900 PF05683 Fumarase C-terminus M1S48_16915 PF07724 AAA domain (Cdc48 subfamily) M1S48_16915 PF10431 C-terminal, D2-small domain, of ClpB protein M1S48_16915 PF06689 ClpX C4-type zinc finger M1S48_16920 PF00574 Clp protease M1S48_16925 PF05697 Bacterial trigger factor protein (TF) M1S48_16925 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase M1S48_16925 PF05698 Bacterial trigger factor protein (TF) C-terminus M1S48_16930 PF07715 TonB-dependent Receptor Plug Domain M1S48_16930 PF00593 TonB dependent receptor M1S48_16935 PF18331 PKHD-type hydroxylase C-terminal domain M1S48_16935 PF13640 2OG-Fe(II) oxygenase superfamily M1S48_16940 PF00682 HMGL-like M1S48_16940 PF08502 LeuA allosteric (dimerisation) domain M1S48_16945 PF00561 alpha/beta hydrolase fold M1S48_16950 PF00561 alpha/beta hydrolase fold M1S48_16950 PF07021 Methionine biosynthesis protein MetW M1S48_16960 PF01725 Ham1 family M1S48_16970 PF02416 mttA/Hcf106 family M1S48_16975 PF02416 mttA/Hcf106 family M1S48_16980 PF00902 Sec-independent protein translocase protein (TatC) M1S48_17000 PF01790 Prolipoprotein diacylglyceryl transferase M1S48_17015 PF00303 Thymidylate synthase M1S48_17020 PF00186 Dihydrofolate reductase M1S48_17030 PF01625 Peptide methionine sulfoxide reductase M1S48_17040 PF01618 MotA/TolQ/ExbB proton channel family M1S48_17050 PF00551 Formyl transferase M1S48_17050 PF01842 ACT domain M1S48_17060 PF00171 Aldehyde dehydrogenase family M1S48_17065 PF00830 Ribosomal L28 family M1S48_17070 PF00471 Ribosomal protein L33 M1S48_17075 PF00999 Sodium/hydrogen exchanger family M1S48_17075 PF02254 TrkA-N domain M1S48_17095 PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) M1S48_17100 PF00580 UvrD/REP helicase N-terminal domain M1S48_17100 PF13361 UvrD-like helicase C-terminal domain M1S48_17115 PF01751 Toprim domain M1S48_17115 PF01396 Topoisomerase DNA binding C4 zinc finger M1S48_17115 PF08272 Topoisomerase I zinc-ribbon-like M1S48_17115 PF01131 DNA topoisomerase M1S48_17125 PF01638 HxlR-like helix-turn-helix M1S48_17130 PF08240 Alcohol dehydrogenase GroES-like domain M1S48_17130 PF00107 Zinc-binding dehydrogenase M1S48_17135 PF04102 SlyX M1S48_17140 PF00005 ABC transporter M1S48_17140 PF16326 ABC transporter C-terminal domain M1S48_17140 PF12848 ABC transporter M1S48_17145 PF01810 LysE type translocator M1S48_17150 PF03279 Bacterial lipid A biosynthesis acyltransferase M1S48_17160 PF00375 Sodium:dicarboxylate symporter family M1S48_17170 PF02774 Semialdehyde dehydrogenase, dimerisation domain M1S48_17170 PF01118 Semialdehyde dehydrogenase, NAD binding domain M1S48_17190 PF01416 tRNA pseudouridine synthase M1S48_17200 PF01176 Translation initiation factor 1A / IF-1 M1S48_17215 PF00180 Isocitrate/isopropylmalate dehydrogenase M1S48_17225 PF00694 Aconitase C-terminal domain M1S48_17230 PF00330 Aconitase family (aconitate hydratase) M1S48_17240 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M1S48_17240 PF03466 LysR substrate binding domain M1S48_17260 PF00293 NUDIX domain M1S48_17265 PF01590 GAF domain M1S48_17265 PF05524 PEP-utilising enzyme, N-terminal M1S48_17265 PF00391 PEP-utilising enzyme, mobile domain M1S48_17265 PF02896 PEP-utilising enzyme, TIM barrel domain M1S48_17270 PF00141 Peroxidase M1S48_17275 PF12706 Beta-lactamase superfamily domain M1S48_17280 PF03466 LysR substrate binding domain M1S48_17280 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M1S48_17290 PF02798 Glutathione S-transferase, N-terminal domain M1S48_17295 PF08279 HTH domain M1S48_17295 PF13280 WYL domain M1S48_17300 PF13419 Haloacid dehalogenase-like hydrolase M1S48_17305 PF00849 RNA pseudouridylate synthase M1S48_17305 PF01479 S4 domain M1S48_17310 PF12111 Polyribonucleotide phosphorylase C terminal M1S48_17310 PF10150 Ribonuclease E/G family M1S48_17310 PF00575 S1 RNA binding domain M1S48_17315 PF00501 AMP-binding enzyme M1S48_17315 PF13193 AMP-binding enzyme C-terminal domain M1S48_17330 PF03466 LysR substrate binding domain M1S48_17330 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M1S48_17335 PF00106 short chain dehydrogenase M1S48_17340 PF04055 Radical SAM superfamily M1S48_17340 PF06969 HemN C-terminal domain M1S48_17350 PF01554 MatE M1S48_17355 PF02771 Acyl-CoA dehydrogenase, N-terminal domain M1S48_17355 PF02770 Acyl-CoA dehydrogenase, middle domain M1S48_17355 PF08028 Acyl-CoA dehydrogenase, C-terminal domain M1S48_17360 PF02771 Acyl-CoA dehydrogenase, N-terminal domain M1S48_17360 PF08028 Acyl-CoA dehydrogenase, C-terminal domain M1S48_17365 PF03109 ABC1 family M1S48_17370 PF01197 Ribosomal protein L31 M1S48_17385 PF02537 CrcB-like protein, Camphor Resistance (CrcB) M1S48_17405 PF03884 DNA gyrase inhibitor YacG M1S48_17410 PF00753 Metallo-beta-lactamase superfamily M1S48_17415 PF00762 Ferrochelatase M1S48_17425 PF01177 Asp/Glu/Hydantoin racemase M1S48_17440 PF01206 Sulfurtransferase TusA M1S48_17445 PF03471 Transporter associated domain M1S48_17445 PF00571 CBS domain M1S48_17450 PF00795 Carbon-nitrogen hydrolase M1S48_17455 PF01588 Putative tRNA binding domain M1S48_17465 PF07963 Prokaryotic N-terminal methylation motif M1S48_17465 PF08334 Type II secretion system (T2SS), protein G M1S48_17470 PF00482 Type II secretion system (T2SS), protein F M1S48_17475 PF18074 Primosomal protein N C-terminal domain M1S48_17475 PF18319 PriA DNA helicase Cys-rich region (CRR) domain M1S48_17475 PF17764 3′ DNA-binding domain (3′BD) M1S48_17475 PF00271 Helicase conserved C-terminal domain M1S48_17475 PF00270 DEAD/DEAH box helicase M1S48_17480 PF00999 Sodium/hydrogen exchanger family M1S48_17480 PF02254 TrkA-N domain M1S48_17485 PF01430 Hsp33 protein M1S48_17515 PF01544 CorA-like Mg2+ transporter protein M1S48_17520 PF01138 3' exoribonuclease family, domain 1 M1S48_17520 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain M1S48_17520 PF00575 S1 RNA binding domain M1S48_17520 PF03725 3' exoribonuclease family, domain 2 M1S48_17520 PF00013 KH domain M1S48_17525 PF00312 Ribosomal protein S15 M1S48_17530 PF00144 Beta-lactamase M1S48_17535 PF13538 UvrD-like helicase C-terminal domain M1S48_17540 PF12705 PD-(D/E)XK nuclease superfamily M1S48_17540 PF00580 UvrD/REP helicase N-terminal domain M1S48_17540 PF13361 UvrD-like helicase C-terminal domain M1S48_17545 PF17946 RecC C-terminal domain M1S48_17555 PF03976 Polyphosphate kinase 2 (PPK2) M1S48_17565 PF01209 ubiE/COQ5 methyltransferase family M1S48_17575 PF03109 ABC1 family M1S48_17580 PF01494 FAD binding domain M1S48_17585 PF01502 Phosphoribosyl-AMP cyclohydrolase M1S48_17600 PF04039 Domain related to MnhB subunit of Na+/H+ antiporter M1S48_17600 PF13244 Domain of unknown function (DUF4040) M1S48_17600 PF00361 Proton-conducting membrane transporter M1S48_17600 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus M1S48_17605 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L M1S48_17610 PF00361 Proton-conducting membrane transporter M1S48_17615 PF01899 Na+/H+ ion antiporter subunit M1S48_17620 PF04066 Multiple resistance and pH regulation protein F (MrpF / PhaF) M1S48_17625 PF03334 Na+/H+ antiporter subunit M1S48_17630 PF02033 Ribosome-binding factor A M1S48_17635 PF08364 Bacterial translation initiation factor IF-2 associated region M1S48_17635 PF11987 Translation-initiation factor 2 M1S48_17635 PF04760 Translation initiation factor IF-2, N-terminal region M1S48_17635 PF00009 Elongation factor Tu GTP binding domain M1S48_17640 PF00575 S1 RNA binding domain M1S48_17640 PF13184 NusA-like KH domain M1S48_17640 PF08529 NusA N-terminal domain M1S48_17645 PF02576 RimP N-terminal domain M1S48_17645 PF17384 RimP C-terminal SH3 domain M1S48_17665 PF03840 Preprotein translocase SecG subunit M1S48_17670 PF00121 Triosephosphate isomerase M1S48_17675 PF00437 Type II/IV secretion system protein M1S48_17675 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain M1S48_17680 PF00482 Type II secretion system (T2SS), protein F M1S48_17690 PF01478 Type IV leader peptidase family M1S48_17690 PF06750 Bacterial Peptidase A24 N-terminal domain M1S48_17695 PF01121 Dephospho-CoA kinase M1S48_17705 PF00588 SpoU rRNA Methylase family M1S48_17705 PF08032 RNA 2'-O ribose methyltransferase substrate binding M1S48_17710 PF06865 Pyrimidine/purine nucleoside phosphorylase M1S48_17720 PF02463 RecF/RecN/SMC N terminal domain M1S48_17725 PF02622 Uncharacterized ACR, COG1678 M1S48_17730 PF03652 Holliday junction resolvase M1S48_17735 PF13533 Biotin-lipoyl like M1S48_17760 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain M1S48_17760 PF02805 Metal binding domain of Ada M1S48_17760 PF12833 Helix-turn-helix domain M1S48_17760 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain M1S48_17765 PF01066 CDP-alcohol phosphatidyltransferase M1S48_17775 PF01541 GIY-YIG catalytic domain M1S48_17775 PF02151 UvrB/uvrC motif M1S48_17775 PF08459 UvrC Helix-hairpin-helix N-terminal M1S48_17795 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain M1S48_17795 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain M1S48_17795 PF00378 Enoyl-CoA hydratase/isomerase M1S48_17800 PF02803 Thiolase, C-terminal domain M1S48_17800 PF00108 Thiolase, N-terminal domain M1S48_17820 PF09278 MerR, DNA binding M1S48_17820 PF00376 MerR family regulatory protein M1S48_17830 PF01323 DSBA-like thioredoxin domain M1S48_17845 PF00183 Hsp90 protein M1S48_17845 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M1S48_17860 PF03553 Na+/H+ antiporter family M1S48_17860 PF13726 Na+-H+ antiporter family M1S48_17865 PF00561 alpha/beta hydrolase fold M1S48_17885 PF00623 RNA polymerase Rpb1, domain 2 M1S48_17885 PF04997 RNA polymerase Rpb1, domain 1 M1S48_17885 PF04983 RNA polymerase Rpb1, domain 3 M1S48_17885 PF05000 RNA polymerase Rpb1, domain 4 M1S48_17885 PF04998 RNA polymerase Rpb1, domain 5 M1S48_17890 PF04563 RNA polymerase beta subunit M1S48_17890 PF04561 RNA polymerase Rpb2, domain 2 M1S48_17890 PF04565 RNA polymerase Rpb2, domain 3 M1S48_17890 PF10385 RNA polymerase beta subunit external 1 domain M1S48_17890 PF00562 RNA polymerase Rpb2, domain 6 M1S48_17890 PF04560 RNA polymerase Rpb2, domain 7 M1S48_17895 PF00542 Ribosomal protein L7/L12 C-terminal domain M1S48_17895 PF16320 Ribosomal protein L7/L12 dimerisation domain M1S48_17900 PF00466 Ribosomal protein L10 M1S48_17905 PF00687 Ribosomal protein L1p/L10e family M1S48_17910 PF00298 Ribosomal protein L11, RNA binding domain M1S48_17910 PF03946 Ribosomal protein L11, N-terminal domain M1S48_17915 PF00467 KOW motif M1S48_17915 PF02357 Transcription termination factor nusG M1S48_17920 PF00584 SecE/Sec61-gamma subunits of protein translocation complex M1S48_17930 PF00009 Elongation factor Tu GTP binding domain M1S48_17930 PF03144 Elongation factor Tu domain 2 M1S48_17930 PF03143 Elongation factor Tu C-terminal domain M1S48_17955 PF00425 chorismate binding enzyme M1S48_17955 PF04715 Anthranilate synthase component I, N terminal region M1S48_17960 PF13419 Haloacid dehalogenase-like hydrolase M1S48_17965 PF00498 FHA domain M1S48_17965 PF12401 Protein of unknown function (DUF2662) M1S48_17970 PF00263 Bacterial type II and III secretion system protein M1S48_17970 PF03958 Bacterial type II/III secretion system short domain M1S48_17985 PF00816 H-NS histone family M1S48_18010 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain M1S48_18010 PF03900 Porphobilinogen deaminase, C-terminal domain M1S48_18015 PF00072 Response regulator receiver domain M1S48_18015 PF04397 LytTr DNA-binding domain M1S48_18020 PF07694 5TMR of 5TMR-LYT M1S48_18020 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M1S48_18020 PF06580 Histidine kinase M1S48_18025 PF14698 Argininosuccinate lyase C-terminal M1S48_18025 PF00206 Lyase M1S48_18030 PF04362 Bacterial Fe(2+) trafficking M1S48_18035 PF01895 PhoU domain M1S48_18040 PF02321 Outer membrane efflux protein M1S48_18045 PF00892 EamA-like transporter family M1S48_18060 PF01964 Radical SAM ThiC family M1S48_18060 PF13667 ThiC-associated domain M1S48_18065 PF00293 NUDIX domain M1S48_18070 PF00149 Calcineurin-like phosphoesterase M1S48_18075 PF01258 Prokaryotic dksA/traR C4-type zinc finger M1S48_18080 PF00749 tRNA synthetases class I (E and Q), catalytic domain M1S48_18085 PF01098 Cell cycle protein M1S48_18090 PF08245 Mur ligase middle domain M1S48_18090 PF02875 Mur ligase family, glutamate ligase domain M1S48_18100 PF02421 Ferrous iron transport protein B M1S48_18100 PF07670 Nucleoside recognition M1S48_18100 PF07664 Ferrous iron transport protein B C terminus M1S48_18110 PF02899 Phage integrase, N-terminal SAM-like domain M1S48_18110 PF00589 Phage integrase family M1S48_18115 PF10411 Disulfide bond isomerase protein N-terminus M1S48_18115 PF13098 Thioredoxin-like domain M1S48_18120 PF01842 ACT domain M1S48_18120 PF00742 Homoserine dehydrogenase M1S48_18120 PF03447 Homoserine dehydrogenase, NAD binding domain M1S48_18125 PF00291 Pyridoxal-phosphate dependent enzyme M1S48_18130 PF00768 D-alanyl-D-alanine carboxypeptidase M1S48_18135 PF00196 Bacterial regulatory proteins, luxR family M1S48_18135 PF00072 Response regulator receiver domain M1S48_18140 PF00512 His Kinase A (phospho-acceptor) domain M1S48_18140 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M1S48_18145 PF02954 Bacterial regulatory protein, Fis family M1S48_18145 PF00072 Response regulator receiver domain M1S48_18145 PF00158 Sigma-54 interaction domain M1S48_18150 PF00595 PDZ domain M1S48_18150 PF03572 Peptidase family S41 M1S48_18155 PF01676 Metalloenzyme superfamily M1S48_18155 PF06415 BPG-independent PGAM N-terminus (iPGM_N) M1S48_18160 PF03739 Lipopolysaccharide export system permease LptF/LptG M1S48_18170 PF00883 Cytosol aminopeptidase family, catalytic domain M1S48_18170 PF02789 Cytosol aminopeptidase family, N-terminal domain M1S48_18190 PF00677 Lumazine binding domain M1S48_18200 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region M1S48_18200 PF01872 RibD C-terminal domain M1S48_18205 PF03477 ATP cone domain M1S48_18210 PF00909 Ammonium Transporter Family M1S48_18215 PF00543 Nitrogen regulatory protein P-II M1S48_18235 PF01636 Phosphotransferase enzyme family M1S48_18240 PF04655 Aminoglycoside/hydroxyurea antibiotic resistance kinase M1S48_18260 PF00440 Bacterial regulatory proteins, tetR family M1S48_18260 PF02909 Tetracyclin repressor-like, C-terminal domain M1S48_18265 PF07690 Major Facilitator Superfamily M1S48_18275 PF01740 STAS domain M1S48_18275 PF00916 Sulfate permease family M1S48_18280 PF00582 Universal stress protein family M1S48_18335 PF02899 Phage integrase, N-terminal SAM-like domain M1S48_18335 PF00589 Phage integrase family M1S48_18365 PF01740 STAS domain M1S48_18365 PF00916 Sulfate permease family M1S48_18370 PF00582 Universal stress protein family M1S48_18405 PF00155 Aminotransferase class I and II M1S48_18405 PF00392 Bacterial regulatory proteins, gntR family M1S48_18415 PF00701 Dihydrodipicolinate synthetase family M1S48_18430 PF03573 outer membrane porin, OprD family M1S48_18435 PF00719 Inorganic pyrophosphatase M1S48_18450 PF13193 AMP-binding enzyme C-terminal domain M1S48_18450 PF00501 AMP-binding enzyme M1S48_18455 PF00521 DNA gyrase/topoisomerase IV, subunit A M1S48_18455 PF03989 DNA gyrase C-terminal domain, beta-propeller M1S48_18460 PF07690 Major Facilitator Superfamily M1S48_18465 PF03458 UPF0126 domain M1S48_18470 PF02810 SEC-C motif M1S48_18475 PF03741 Integral membrane protein TerC family M1S48_18475 PF03471 Transporter associated domain M1S48_18480 PF03641 Possible lysine decarboxylase M1S48_18485 PF07690 Major Facilitator Superfamily M1S48_18495 PF00817 impB/mucB/samB family M1S48_18495 PF11799 impB/mucB/samB family C-terminal domain M1S48_18495 PF11798 IMS family HHH motif M1S48_18515 PF11842 Domain of unknown function (DUF3362) M1S48_18515 PF04055 Radical SAM superfamily M1S48_18515 PF08497 Radical SAM N-terminal M1S48_18535 PF03358 NADPH-dependent FMN reductase M1S48_18545 PF00291 Pyridoxal-phosphate dependent enzyme M1S48_18605 PF01327 Polypeptide deformylase M1S48_18615 PF02481 DNA recombination-mediator protein A M1S48_18615 PF17782 DprA winged helix domain M1S48_18620 PF01300 Telomere recombination M1S48_18625 PF00892 EamA-like transporter family M1S48_18630 PF00440 Bacterial regulatory proteins, tetR family M1S48_18635 PF07690 Major Facilitator Superfamily M1S48_18645 PF00255 Glutathione peroxidase M1S48_18655 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain M1S48_18660 PF02874 ATP synthase alpha/beta family, beta-barrel domain M1S48_18660 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain M1S48_18665 PF00231 ATP synthase M1S48_18670 PF02874 ATP synthase alpha/beta family, beta-barrel domain M1S48_18670 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain M1S48_18670 PF00306 ATP synthase alpha/beta chain, C terminal domain M1S48_18675 PF00213 ATP synthase delta (OSCP) subunit M1S48_18680 PF00430 ATP synthase B/B' CF(0) M1S48_18685 PF00137 ATP synthase subunit C M1S48_18690 PF00119 ATP synthase A chain M1S48_18710 PF00005 ABC transporter M1S48_18715 PF00950 ABC 3 transport family M1S48_18720 PF01810 LysE type translocator M1S48_18725 PF04261 Dyp-type peroxidase family M1S48_18735 PF00390 Malic enzyme, N-terminal domain M1S48_18735 PF03949 Malic enzyme, NAD binding domain M1S48_18740 PF00750 tRNA synthetases class I (R) M1S48_18740 PF03485 Arginyl tRNA synthetase N terminal domain M1S48_18740 PF05746 DALR anticodon binding domain M1S48_18760 PF02678 Pirin M1S48_18760 PF05726 Pirin C-terminal cupin domain M1S48_18770 PF03551 Transcriptional regulator PadR-like family M1S48_18775 PF13427 Domain of unknown function (DUF4111) M1S48_18775 PF01909 Nucleotidyltransferase domain M1S48_18780 PF00117 Glutamine amidotransferase class-I M1S48_18780 PF00958 GMP synthase C terminal domain M1S48_18780 PF02540 NAD synthase M1S48_18785 PF04286 Protein of unknown function (DUF445) M1S48_18790 PF07681 DoxX M1S48_18795 PF09335 SNARE associated Golgi protein M1S48_18810 PF13614 AAA domain M1S48_18820 PF01722 BolA-like protein M1S48_18835 PF01648 4'-phosphopantetheinyl transferase superfamily M1S48_18840 PF12697 Alpha/beta hydrolase family M1S48_18860 PF16197 Ketoacyl-synthetase C-terminal extension M1S48_18860 PF02801 Beta-ketoacyl synthase, C-terminal domain M1S48_18860 PF00109 Beta-ketoacyl synthase, N-terminal domain M1S48_18860 PF00975 Thioesterase domain M1S48_18860 PF14765 Polyketide synthase dehydratase M1S48_18860 PF08242 Methyltransferase domain M1S48_18860 PF00550 Phosphopantetheine attachment site M1S48_18865 PF02771 Acyl-CoA dehydrogenase, N-terminal domain M1S48_18865 PF02770 Acyl-CoA dehydrogenase, middle domain M1S48_18865 PF00441 Acyl-CoA dehydrogenase, C-terminal domain M1S48_18870 PF00501 AMP-binding enzyme M1S48_18875 PF03472 Autoinducer binding domain M1S48_18875 PF00196 Bacterial regulatory proteins, luxR family M1S48_18885 PF00765 Autoinducer synthase M1S48_18890 PF07690 Major Facilitator Superfamily M1S48_18890 PF00083 Sugar (and other) transporter M1S48_18895 PF00378 Enoyl-CoA hydratase/isomerase M1S48_18900 PF00378 Enoyl-CoA hydratase/isomerase M1S48_18905 PF02771 Acyl-CoA dehydrogenase, N-terminal domain M1S48_18905 PF02770 Acyl-CoA dehydrogenase, middle domain M1S48_18905 PF00441 Acyl-CoA dehydrogenase, C-terminal domain M1S48_18910 PF13193 AMP-binding enzyme C-terminal domain M1S48_18910 PF00501 AMP-binding enzyme M1S48_18915 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase M1S48_18915 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase M1S48_18920 PF00171 Aldehyde dehydrogenase family M1S48_18930 PF00324 Amino acid permease M1S48_18935 PF00324 Amino acid permease M1S48_18940 PF01042 Endoribonuclease L-PSP M1S48_18945 PF00842 Alanine racemase, C-terminal domain M1S48_18945 PF01168 Alanine racemase, N-terminal domain M1S48_18950 PF01266 FAD dependent oxidoreductase M1S48_18955 PF01037 Lrp/AsnC ligand binding domain M1S48_18965 PF00593 TonB dependent receptor M1S48_18965 PF07715 TonB-dependent Receptor Plug Domain M1S48_18980 PF00849 RNA pseudouridylate synthase M1S48_18995 PF00440 Bacterial regulatory proteins, tetR family M1S48_18995 PF08361 MAATS-type transcriptional repressor, C-terminal region M1S48_19005 PF00109 Beta-ketoacyl synthase, N-terminal domain M1S48_19005 PF02801 Beta-ketoacyl synthase, C-terminal domain M1S48_19040 PF00694 Aconitase C-terminal domain M1S48_19040 PF00330 Aconitase family (aconitate hydratase) M1S48_19045 PF00285 Citrate synthase, C-terminal domain M1S48_19055 PF07729 FCD domain M1S48_19055 PF00392 Bacterial regulatory proteins, gntR family M1S48_19065 PF00155 Aminotransferase class I and II M1S48_19070 PF01565 FAD binding domain M1S48_19070 PF09330 D-lactate dehydrogenase, membrane binding M1S48_19075 PF01070 FMN-dependent dehydrogenase M1S48_19080 PF07729 FCD domain M1S48_19080 PF00392 Bacterial regulatory proteins, gntR family M1S48_19085 PF02652 L-lactate permease M1S48_19090 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I M1S48_19090 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II M1S48_19090 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III M1S48_19090 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain M1S48_19095 PF16363 GDP-mannose 4,6 dehydratase M1S48_19100 PF00342 Phosphoglucose isomerase M1S48_19105 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain M1S48_19105 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain M1S48_19105 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain M1S48_19110 PF00483 Nucleotidyl transferase M1S48_19115 PF02397 Bacterial sugar transferase M1S48_19120 PF00535 Glycosyl transferase family 2 M1S48_19150 PF08666 SAF domain M1S48_19150 PF03102 NeuB family M1S48_19165 PF02348 Cytidylyltransferase M1S48_19170 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family M1S48_19175 PF02719 Polysaccharide biosynthesis protein M1S48_19180 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain M1S48_19180 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain M1S48_19180 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain M1S48_19185 PF10531 SLBB domain M1S48_19185 PF02563 Polysaccharide biosynthesis/export protein M1S48_19185 PF18412 Outer-membrane lipoprotein Wza C-terminal domain M1S48_19190 PF01451 Low molecular weight phosphotyrosine protein phosphatase M1S48_19195 PF13807 G-rich domain on putative tyrosine kinase M1S48_19195 PF02706 Chain length determinant protein M1S48_19195 PF13614 AAA domain M1S48_19200 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase M1S48_19200 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase M1S48_19205 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase M1S48_19205 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase M1S48_19210 PF03023 Lipid II flippase MurJ M1S48_19215 PF01510 N-acetylmuramoyl-L-alanine amidase M1S48_19220 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain M1S48_19220 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain M1S48_19230 PF05506 Domain of unknown function (DUF756) M1S48_19230 PF04185 Phosphoesterase family M1S48_19240 PF01138 3' exoribonuclease family, domain 1 M1S48_19240 PF03725 3' exoribonuclease family, domain 2 M1S48_19245 PF00487 Fatty acid desaturase M1S48_19250 PF00175 Oxidoreductase NAD-binding domain M1S48_19255 PF00440 Bacterial regulatory proteins, tetR family M1S48_19260 PF08360 QacR-like protein, C-terminal region M1S48_19260 PF00440 Bacterial regulatory proteins, tetR family M1S48_19265 PF01323 DSBA-like thioredoxin domain M1S48_19275 PF13419 Haloacid dehalogenase-like hydrolase M1S48_19280 PF00106 short chain dehydrogenase M1S48_19295 PF00696 Amino acid kinase family M1S48_19295 PF00583 Acetyltransferase (GNAT) family M1S48_19300 PF09084 NMT1/THI5 like M1S48_19305 PF09084 NMT1/THI5 like M1S48_19310 PF00296 Luciferase-like monooxygenase M1S48_19315 PF00528 Binding-protein-dependent transport system inner membrane component M1S48_19320 PF00005 ABC transporter M1S48_19325 PF08362 YcdC-like protein, C-terminal region M1S48_19325 PF00440 Bacterial regulatory proteins, tetR family M1S48_19330 PF01048 Phosphorylase superfamily M1S48_19340 PF01687 Riboflavin kinase M1S48_19340 PF06574 FAD synthetase M1S48_19345 PF00133 tRNA synthetases class I (I, L, M and V) M1S48_19345 PF06827 Zinc finger found in FPG and IleRS M1S48_19345 PF08264 Anticodon-binding domain of tRNA M1S48_19350 PF01252 Signal peptidase (SPase) II M1S48_19355 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase M1S48_19395 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD M1S48_19400 PF07859 alpha/beta hydrolase fold M1S48_19420 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M1S48_19420 PF03466 LysR substrate binding domain M1S48_19425 PF01025 GrpE M1S48_19430 PF00012 Hsp70 protein M1S48_19450 PF13406 Transglycosylase SLT domain M1S48_19455 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain M1S48_19455 PF02222 ATP-grasp domain M1S48_19460 PF00731 AIR carboxylase M1S48_19470 PF01225 Mur ligase family, catalytic domain M1S48_19470 PF08245 Mur ligase middle domain M1S48_19470 PF02875 Mur ligase family, glutamate ligase domain M1S48_19480 PF01569 PAP2 superfamily M1S48_19485 PF03741 Integral membrane protein TerC family M1S48_19495 PF03738 Glutathionylspermidine synthase preATP-grasp M1S48_19500 PF00355 Rieske [2Fe-2S] domain M1S48_19505 PF01979 Amidohydrolase family M1S48_19510 PF00156 Phosphoribosyl transferase domain M1S48_19520 PF10411 Disulfide bond isomerase protein N-terminus M1S48_19520 PF13098 Thioredoxin-like domain M1S48_19525 PF01545 Cation efflux family M1S48_19525 PF16916 Dimerisation domain of Zinc Transporter M1S48_19530 PF02583 Metal-sensitive transcriptional repressor M1S48_19535 PF01926 50S ribosome-binding GTPase M1S48_19535 PF12631 MnmE helical domain M1S48_19535 PF10396 GTP-binding protein TrmE N-terminus M1S48_19540 PF02096 60Kd inner membrane protein M1S48_19540 PF14849 YidC periplasmic domain M1S48_19545 PF01809 Putative membrane protein insertion efficiency factor M1S48_19550 PF00825 Ribonuclease P M1S48_19555 PF00468 Ribosomal protein L34 M1S48_19580 PF01807 CHC2 zinc finger M1S48_19580 PF08275 DNA primase catalytic core, N-terminal domain M1S48_19580 PF10410 DnaB-helicase binding domain of primase M1S48_19610 PF00625 Guanylate kinase M1S48_19625 PF07015 VirC1 protein M1S48_19635 PF00589 Phage integrase family M1S48_19635 PF02899 Phage integrase, N-terminal SAM-like domain M1S48_19675 PF02811 PHP domain M1S48_19675 PF14579 Helix-hairpin-helix motif M1S48_19675 PF17657 Bacterial DNA polymerase III alpha subunit finger domain M1S48_19675 PF07733 Bacterial DNA polymerase III alpha NTPase domain M1S48_19685 PF02811 PHP domain M1S48_19685 PF14579 Helix-hairpin-helix motif M1S48_19685 PF17657 Bacterial DNA polymerase III alpha subunit finger domain M1S48_19685 PF07733 Bacterial DNA polymerase III alpha NTPase domain M1S48_19700 PF01612 3'-5' exonuclease M1S48_19700 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain M1S48_19700 PF00476 DNA polymerase family A M1S48_19700 PF01367 5'-3' exonuclease, C-terminal SAM fold M1S48_19705 PF00154 recA bacterial DNA recombination protein M1S48_19705 PF03161 LAGLIDADG DNA endonuclease family M1S48_19730 PF02463 RecF/RecN/SMC N terminal domain M1S48_19730 PF06470 SMC proteins Flexible Hinge Domain M1S48_19750 PF02867 Ribonucleotide reductase, barrel domain M1S48_19750 PF03477 ATP cone domain M1S48_19750 PF00317 Ribonucleotide reductase, all-alpha domain M1S48_19755 PF00268 Ribonucleotide reductase, small chain M1S48_19795 PF00929 Exonuclease M1S48_19830 PF13737 Transposase DDE domain M1S48_19840 PF00440 Bacterial regulatory proteins, tetR family M1S48_19840 PF16925 Tetracyclin repressor-like, C-terminal domain M1S48_19850 PF00724 NADH:flavin oxidoreductase / NADH oxidase family M1S48_19860 PF00465 Iron-containing alcohol dehydrogenase M1S48_19875 PF00756 Putative esterase M1S48_19880 PF08240 Alcohol dehydrogenase GroES-like domain M1S48_19880 PF00107 Zinc-binding dehydrogenase M1S48_19885 PF02583 Metal-sensitive transcriptional repressor M1S48_19900 PF00107 Zinc-binding dehydrogenase M1S48_19900 PF08240 Alcohol dehydrogenase GroES-like domain M1S48_19900 PF13823 Alcohol dehydrogenase GroES-associated M1S48_19965 PF02216 B domain M1S48_19965 PF00746 LPXTG cell wall anchor motif M1S48_19965 PF01476 LysM domain M1S48_19965 PF03373 Octapeptide repeat M1S48_19965 PF04650 YSIRK type signal peptide M1S48_19980 PF02559 CarD-like/TRCF domain M1S48_19980 PF00270 DEAD/DEAH box helicase M1S48_19980 PF00271 Helicase conserved C-terminal domain M1S48_19980 PF03461 TRCF domain M1S48_19980 PF17757 UvrB interaction domain M1S48_20000 PF00005 ABC transporter M1S48_20000 PF09383 NIL domain