locus-tag class description M1S54_00005 PF00308 Bacterial dnaA protein M1S54_00005 PF08299 Bacterial dnaA protein helix-turn-helix M1S54_00005 PF11638 DnaA N-terminal domain M1S54_00010 PF00712 DNA polymerase III beta subunit, N-terminal domain M1S54_00010 PF02767 DNA polymerase III beta subunit, central domain M1S54_00010 PF02768 DNA polymerase III beta subunit, C-terminal domain M1S54_00015 PF02463 RecF/RecN/SMC N terminal domain M1S54_00020 PF00204 DNA gyrase B M1S54_00020 PF00986 DNA gyrase B subunit, carboxyl terminus M1S54_00020 PF18053 DNA gyrase B subunit insert domain M1S54_00020 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M1S54_00020 PF01751 Toprim domain M1S54_00030 PF09335 SNARE associated Golgi protein M1S54_00035 PF00005 ABC transporter M1S54_00035 PF12848 ABC transporter M1S54_00055 PF01521 Iron-sulphur cluster biosynthesis M1S54_00060 PF00561 alpha/beta hydrolase fold M1S54_00065 PF03702 Anhydro-N-acetylmuramic acid kinase M1S54_00070 PF00579 tRNA synthetases class I (W and Y) M1S54_00110 PF00209 Sodium:neurotransmitter symporter family M1S54_00120 PF01189 16S rRNA methyltransferase RsmB/F M1S54_00120 PF01029 NusB family M1S54_00125 PF02911 Formyl transferase, C-terminal domain M1S54_00125 PF00551 Formyl transferase M1S54_00130 PF00920 Dehydratase family M1S54_00145 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M1S54_00145 PF03466 LysR substrate binding domain M1S54_00150 PF00860 Permease family M1S54_00155 PF00311 Phosphoenolpyruvate carboxylase M1S54_00160 PF08361 MAATS-type transcriptional repressor, C-terminal region M1S54_00160 PF00440 Bacterial regulatory proteins, tetR family M1S54_00165 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion M1S54_00170 PF00873 AcrB/AcrD/AcrF family M1S54_00180 PF00684 DnaJ central domain M1S54_00180 PF01556 DnaJ C terminal domain M1S54_00180 PF00226 DnaJ domain M1S54_00190 PF05173 Dihydrodipicolinate reductase, C-terminus M1S54_00190 PF01113 Dihydrodipicolinate reductase, N-terminus M1S54_00200 PF07690 Major Facilitator Superfamily M1S54_00205 PF00248 Aldo/keto reductase family M1S54_00210 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M1S54_00210 PF03466 LysR substrate binding domain M1S54_00225 PF00155 Aminotransferase class I and II M1S54_00225 PF00392 Bacterial regulatory proteins, gntR family M1S54_00230 PF08240 Alcohol dehydrogenase GroES-like domain M1S54_00230 PF00107 Zinc-binding dehydrogenase M1S54_00235 PF03352 Methyladenine glycosylase M1S54_00250 PF00730 HhH-GPD superfamily base excision DNA repair protein M1S54_00250 PF00633 Helix-hairpin-helix motif M1S54_00250 PF10576 Iron-sulfur binding domain of endonuclease III M1S54_00250 PF14815 NUDIX domain M1S54_00265 PF07043 Protein of unknown function (DUF1328) M1S54_00270 PF03692 Putative zinc- or iron-chelating domain M1S54_00275 PF07995 Glucose / Sorbosone dehydrogenase M1S54_00280 PF12002 MgsA AAA+ ATPase C terminal M1S54_00280 PF16193 AAA C-terminal domain M1S54_00280 PF00004 ATPase family associated with various cellular activities (AAA) M1S54_00285 PF01226 Formate/nitrite transporter M1S54_00295 PF01259 SAICAR synthetase M1S54_00305 PF00701 Dihydrodipicolinate synthetase family M1S54_00310 PF00857 Isochorismatase family M1S54_00315 PF01758 Sodium Bile acid symporter family M1S54_00320 PF01554 MatE M1S54_00325 PF04463 Protein of unknown function (DUF523) M1S54_00330 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily M1S54_00340 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily M1S54_00345 PF02798 Glutathione S-transferase, N-terminal domain M1S54_00345 PF14497 Glutathione S-transferase, C-terminal domain M1S54_00355 PF00324 Amino acid permease M1S54_00365 PF02492 CobW/HypB/UreG, nucleotide-binding domain M1S54_00365 PF07683 Cobalamin synthesis protein cobW C-terminal domain M1S54_00375 PF00392 Bacterial regulatory proteins, gntR family M1S54_00375 PF07702 UTRA domain M1S54_00380 PF05962 HutD M1S54_00385 PF01175 Urocanase Rossmann-like domain M1S54_00385 PF17392 Urocanase C-terminal domain M1S54_00385 PF17391 Urocanase N-terminal domain M1S54_00390 PF00221 Aromatic amino acid lyase M1S54_00395 PF00324 Amino acid permease M1S54_00400 PF01979 Amidohydrolase family M1S54_00405 PF00491 Arginase family M1S54_00420 PF01177 Asp/Glu/Hydantoin racemase M1S54_00425 PF01380 SIS domain M1S54_00430 PF14602 Hexapeptide repeat of succinyl-transferase M1S54_00430 PF00132 Bacterial transferase hexapeptide (six repeats) M1S54_00430 PF12804 MobA-like NTP transferase domain M1S54_00435 PF04608 Phosphatidylglycerophosphatase A M1S54_00440 PF02769 AIR synthase related protein, C-terminal domain M1S54_00440 PF00586 AIR synthase related protein, N-terminal domain M1S54_00445 PF01029 NusB family M1S54_00450 PF00885 6,7-dimethyl-8-ribityllumazine synthase M1S54_00455 PF00925 GTP cyclohydrolase II M1S54_00455 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase M1S54_00480 PF02580 D-Tyr-tRNA(Tyr) deacylase M1S54_00485 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family M1S54_00485 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain M1S54_00490 PF00581 Rhodanese-like domain M1S54_00495 PF02666 Phosphatidylserine decarboxylase M1S54_00500 PF03069 Acetamidase/Formamidase family M1S54_00520 PF11808 Phosphate regulon sensor protein PhoR M1S54_00520 PF00989 PAS fold M1S54_00520 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M1S54_00520 PF00512 His Kinase A (phospho-acceptor) domain M1S54_00525 PF00486 Transcriptional regulatory protein, C terminal M1S54_00525 PF00072 Response regulator receiver domain M1S54_00535 PF00106 short chain dehydrogenase M1S54_00540 PF01554 MatE M1S54_00545 PF00155 Aminotransferase class I and II M1S54_00550 PF04286 Protein of unknown function (DUF445) M1S54_00565 PF04262 Glutamate-cysteine ligase M1S54_00570 PF02600 Disulfide bond formation protein DsbB M1S54_00575 PF13296 Putative type VI secretion system Rhs element Vgr M1S54_00575 PF04717 Type VI secretion system, phage-baseplate injector M1S54_00575 PF10106 Uncharacterized protein conserved in bacteria (DUF2345) M1S54_00580 PF00877 NlpC/P60 family M1S54_00580 PF01476 LysM domain M1S54_00595 PF05728 Uncharacterised protein family (UPF0227) M1S54_00600 PF00204 DNA gyrase B M1S54_00600 PF00986 DNA gyrase B subunit, carboxyl terminus M1S54_00600 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M1S54_00600 PF01751 Toprim domain M1S54_00605 PF00106 short chain dehydrogenase M1S54_00610 PF04115 Ureidoglycolate lyase M1S54_00615 PF03561 Allantoicase repeat M1S54_00620 PF01494 FAD binding domain M1S54_00630 PF00860 Permease family M1S54_00635 PF00576 HIUase/Transthyretin family M1S54_00665 PF02683 Cytochrome C biogenesis protein transmembrane region M1S54_00665 PF11412 Disulphide bond corrector protein DsbC M1S54_00670 PF07694 5TMR of 5TMR-LYT M1S54_00670 PF00990 Diguanylate cyclase, GGDEF domain M1S54_00675 PF07859 alpha/beta hydrolase fold M1S54_00685 PF03960 ArsC family M1S54_00690 PF03372 Endonuclease/Exonuclease/phosphatase family M1S54_00695 PF00156 Phosphoribosyl transferase domain M1S54_00700 PF00593 TonB dependent receptor M1S54_00700 PF07715 TonB-dependent Receptor Plug Domain M1S54_00710 PF02951 Prokaryotic glutathione synthetase, N-terminal domain M1S54_00710 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain M1S54_00715 PF03033 Glycosyltransferase family 28 N-terminal domain M1S54_00715 PF04101 Glycosyltransferase family 28 C-terminal domain M1S54_00720 PF08245 Mur ligase middle domain M1S54_00720 PF01225 Mur ligase family, catalytic domain M1S54_00720 PF02875 Mur ligase family, glutamate ligase domain M1S54_00725 PF01820 D-ala D-ala ligase N-terminus M1S54_00725 PF07478 D-ala D-ala ligase C-terminus M1S54_00730 PF08478 POTRA domain, FtsQ-type M1S54_00730 PF03799 Cell division protein FtsQ M1S54_00735 PF02491 SHS2 domain inserted in FTSA M1S54_00740 PF00091 Tubulin/FtsZ family, GTPase domain M1S54_00740 PF12327 FtsZ family, C-terminal domain M1S54_00745 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase M1S54_00755 PF01551 Peptidase family M23 M1S54_00760 PF00456 Transketolase, thiamine diphosphate binding domain M1S54_00760 PF17831 Pyruvate dehydrogenase E1 component middle domain M1S54_00765 PF02817 e3 binding domain M1S54_00765 PF00364 Biotin-requiring enzyme M1S54_00765 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) M1S54_00775 PF01169 Uncharacterized protein family UPF0016 M1S54_00780 PF07715 TonB-dependent Receptor Plug Domain M1S54_00780 PF00593 TonB dependent receptor M1S54_00785 PF00258 Flavodoxin M1S54_00785 PF01613 Flavin reductase like domain M1S54_00790 PF03692 Putative zinc- or iron-chelating domain M1S54_00795 PF00478 IMP dehydrogenase / GMP reductase domain M1S54_00795 PF00571 CBS domain M1S54_00800 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III M1S54_00800 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I M1S54_00800 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain M1S54_00800 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II M1S54_00805 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region M1S54_00805 PF01243 Pyridoxamine 5'-phosphate oxidase M1S54_00810 PF02272 DHHA1 domain M1S54_00810 PF17768 RecJ OB domain M1S54_00810 PF01368 DHH family M1S54_00830 PF00724 NADH:flavin oxidoreductase / NADH oxidase family M1S54_00835 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) M1S54_00840 PF04452 RNA methyltransferase M1S54_00845 PF00924 Mechanosensitive ion channel M1S54_00855 PF16177 Acetyl-coenzyme A synthetase N-terminus M1S54_00855 PF00501 AMP-binding enzyme M1S54_00855 PF13193 AMP-binding enzyme C-terminal domain M1S54_00860 PF00857 Isochorismatase family M1S54_00865 PF01037 Lrp/AsnC ligand binding domain M1S54_00870 PF00872 Transposase, Mutator family M1S54_00875 PF00296 Luciferase-like monooxygenase M1S54_00880 PF03358 NADPH-dependent FMN reductase M1S54_00885 PF00196 Bacterial regulatory proteins, luxR family M1S54_00885 PF00072 Response regulator receiver domain M1S54_00895 PF00672 HAMP domain M1S54_00895 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M1S54_00895 PF01627 Hpt domain M1S54_00895 PF00072 Response regulator receiver domain M1S54_00895 PF00512 His Kinase A (phospho-acceptor) domain M1S54_00900 PF04341 Protein of unknown function, DUF485 M1S54_00905 PF00474 Sodium:solute symporter family M1S54_00915 PF02028 BCCT, betaine/carnitine/choline family transporter M1S54_00925 PF00990 Diguanylate cyclase, GGDEF domain M1S54_00935 PF17760 UvrA interaction domain M1S54_00935 PF17755 UvrA DNA-binding domain M1S54_00935 PF00005 ABC transporter M1S54_00940 PF00440 Bacterial regulatory proteins, tetR family M1S54_00940 PF16925 Tetracyclin repressor-like, C-terminal domain M1S54_00945 PF00107 Zinc-binding dehydrogenase M1S54_00945 PF08240 Alcohol dehydrogenase GroES-like domain M1S54_00960 PF06942 GlpM protein M1S54_00965 PF03070 TENA/THI-4/PQQC family M1S54_00965 PF02581 Thiamine monophosphate synthase M1S54_00965 PF08543 Phosphomethylpyrimidine kinase M1S54_00975 PF07690 Major Facilitator Superfamily M1S54_00980 PF00436 Single-strand binding protein family M1S54_00990 PF03591 AzlC protein M1S54_01000 PF00324 Amino acid permease M1S54_01005 PF00155 Aminotransferase class I and II M1S54_01005 PF00392 Bacterial regulatory proteins, gntR family M1S54_01010 PF00202 Aminotransferase class-III M1S54_01015 PF00171 Aldehyde dehydrogenase family M1S54_01020 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M1S54_01025 PF00857 Isochorismatase family M1S54_01030 PF02678 Pirin M1S54_01030 PF05726 Pirin C-terminal cupin domain M1S54_01035 PF01593 Flavin containing amine oxidoreductase M1S54_01055 PF07690 Major Facilitator Superfamily M1S54_01060 PF03466 LysR substrate binding domain M1S54_01060 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M1S54_01080 PF00248 Aldo/keto reductase family M1S54_01085 PF02311 AraC-like ligand binding domain M1S54_01085 PF12833 Helix-turn-helix domain M1S54_01115 PF01638 HxlR-like helix-turn-helix M1S54_01120 PF02525 Flavodoxin-like fold M1S54_01140 PF02705 K+ potassium transporter M1S54_01165 PF00230 Major intrinsic protein M1S54_01180 PF00977 Histidine biosynthesis protein M1S54_01185 PF01636 Phosphotransferase enzyme family M1S54_01200 PF03992 Antibiotic biosynthesis monooxygenase M1S54_01215 PF00977 Histidine biosynthesis protein M1S54_01230 PF00117 Glutamine amidotransferase class-I M1S54_01235 PF00475 Imidazoleglycerol-phosphate dehydratase M1S54_01255 PF00583 Acetyltransferase (GNAT) family M1S54_01260 PF13336 Acetyl-CoA hydrolase/transferase C-terminal domain M1S54_01260 PF02550 Acetyl-CoA hydrolase/transferase N-terminal domain M1S54_01270 PF00512 His Kinase A (phospho-acceptor) domain M1S54_01270 PF00672 HAMP domain M1S54_01270 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M1S54_01275 PF00486 Transcriptional regulatory protein, C terminal M1S54_01275 PF00072 Response regulator receiver domain M1S54_01280 PF16921 Tex protein YqgF-like domain M1S54_01280 PF09371 Tex-like protein N-terminal domain M1S54_01280 PF00575 S1 RNA binding domain M1S54_01280 PF17674 HHH domain M1S54_01285 PF00916 Sulfate permease family M1S54_01285 PF01740 STAS domain M1S54_01290 PF00106 short chain dehydrogenase M1S54_01295 PF01053 Cys/Met metabolism PLP-dependent enzyme M1S54_01300 PF12848 ABC transporter M1S54_01300 PF00005 ABC transporter M1S54_01325 PF04191 Phospholipid methyltransferase M1S54_01345 PF00529 HlyD membrane-fusion protein of T1SS M1S54_01345 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion M1S54_01350 PF00873 AcrB/AcrD/AcrF family M1S54_01355 PF01545 Cation efflux family M1S54_01385 PF00324 Amino acid permease M1S54_01400 PF00749 tRNA synthetases class I (E and Q), catalytic domain M1S54_01415 PF01795 MraW methylase family M1S54_01425 PF03717 Penicillin-binding Protein dimerisation domain M1S54_01425 PF00905 Penicillin binding protein transpeptidase domain M1S54_01430 PF01225 Mur ligase family, catalytic domain M1S54_01430 PF02875 Mur ligase family, glutamate ligase domain M1S54_01430 PF08245 Mur ligase middle domain M1S54_01435 PF01225 Mur ligase family, catalytic domain M1S54_01435 PF02875 Mur ligase family, glutamate ligase domain M1S54_01435 PF08245 Mur ligase middle domain M1S54_01440 PF00953 Glycosyl transferase family 4 M1S54_01450 PF13847 Methyltransferase domain M1S54_01455 PF17092 Penicillin-binding protein OB-like domain M1S54_01455 PF00912 Transglycosylase M1S54_01455 PF00905 Penicillin binding protein transpeptidase domain M1S54_01460 PF11104 Type IV pilus assembly protein PilM; M1S54_01465 PF05137 Fimbrial assembly protein (PilN) M1S54_01470 PF04350 Pilus assembly protein, PilO M1S54_01480 PF07660 Secretin and TonB N terminus short domain M1S54_01480 PF03958 Bacterial type II/III secretion system short domain M1S54_01480 PF00263 Bacterial type II and III secretion system protein M1S54_01480 PF11741 AMIN domain M1S54_01485 PF01202 Shikimate kinase M1S54_01490 PF01761 3-dehydroquinate synthase M1S54_01500 PF04898 Glutamate synthase central domain M1S54_01500 PF00310 Glutamine amidotransferases class-II M1S54_01500 PF01493 GXGXG motif M1S54_01500 PF01645 Conserved region in glutamate synthase M1S54_01505 PF07992 Pyridine nucleotide-disulphide oxidoreductase M1S54_01505 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster M1S54_01515 PF04011 LemA family M1S54_01520 PF04536 TPM domain M1S54_01530 PF07963 Prokaryotic N-terminal methylation motif M1S54_01530 PF00114 Pilin (bacterial filament) M1S54_01540 PF15864 Protein glycosylation ligase M1S54_01540 PF04932 O-Antigen ligase M1S54_01540 PF11846 Virulence factor membrane-bound polymerase, C-terminal M1S54_01550 PF00210 Ferritin-like domain M1S54_01555 PF04324 BFD-like [2Fe-2S] binding domain M1S54_01560 PF01042 Endoribonuclease L-PSP M1S54_01565 PF02824 TGS domain M1S54_01565 PF13291 ACT domain M1S54_01565 PF04607 Region found in RelA / SpoT proteins M1S54_01575 PF01192 RNA polymerase Rpb6 M1S54_01580 PF00625 Guanylate kinase M1S54_01585 PF02401 LytB protein M1S54_01625 PF00886 Ribosomal protein S16 M1S54_01630 PF05239 PRC-barrel domain M1S54_01630 PF01782 RimM N-terminal domain M1S54_01635 PF01746 tRNA (Guanine-1)-methyltransferase M1S54_01640 PF01245 Ribosomal protein L19 M1S54_01645 PF00561 alpha/beta hydrolase fold M1S54_01650 PF03280 Proteobacterial lipase chaperone protein M1S54_01655 PF16198 tRNA pseudouridylate synthase B C-terminal domain M1S54_01655 PF01509 TruB family pseudouridylate synthase (N terminal domain) M1S54_01655 PF09157 Pseudouridine synthase II TruB, C-terminal M1S54_01660 PF01925 Sulfite exporter TauE/SafE M1S54_01670 PF00892 EamA-like transporter family M1S54_01675 PF00892 EamA-like transporter family M1S54_01680 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain M1S54_01680 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain M1S54_01685 PF02913 FAD linked oxidases, C-terminal domain M1S54_01685 PF01565 FAD binding domain M1S54_01695 PF03992 Antibiotic biosynthesis monooxygenase M1S54_01700 PF02525 Flavodoxin-like fold M1S54_01710 PF07690 Major Facilitator Superfamily M1S54_01715 PF12805 FUSC-like inner membrane protein yccS M1S54_01720 PF00080 Copper/zinc superoxide dismutase (SODC) M1S54_01725 PF01594 AI-2E family transporter M1S54_01730 PF13614 AAA domain M1S54_01760 PF00324 Amino acid permease M1S54_01765 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain M1S54_01765 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase M1S54_01770 PF00202 Aminotransferase class-III M1S54_01775 PF04958 Arginine N-succinyltransferase beta subunit M1S54_01780 PF00171 Aldehyde dehydrogenase family M1S54_01785 PF04996 Succinylarginine dihydrolase M1S54_01790 PF04952 Succinylglutamate desuccinylase / Aspartoacylase family M1S54_01805 PF05922 Peptidase inhibitor I9 M1S54_01805 PF00082 Subtilase family M1S54_01820 PF03466 LysR substrate binding domain M1S54_01820 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M1S54_01825 PF00892 EamA-like transporter family M1S54_01835 PF05746 DALR anticodon binding domain M1S54_01835 PF02092 Glycyl-tRNA synthetase beta subunit M1S54_01840 PF02091 Glycyl-tRNA synthetase alpha subunit M1S54_01865 PF00571 CBS domain M1S54_01870 PF04024 PspC domain M1S54_01880 PF02771 Acyl-CoA dehydrogenase, N-terminal domain M1S54_01880 PF00441 Acyl-CoA dehydrogenase, C-terminal domain M1S54_01880 PF12806 Acetyl-CoA dehydrogenase C-terminal like M1S54_01880 PF02770 Acyl-CoA dehydrogenase, middle domain M1S54_01890 PF01488 Shikimate / quinate 5-dehydrogenase M1S54_01890 PF18317 Shikimate 5'-dehydrogenase C-terminal domain M1S54_01890 PF08501 Shikimate dehydrogenase substrate binding domain M1S54_01895 PF01218 Coproporphyrinogen III oxidase M1S54_01900 PF00925 GTP cyclohydrolase II M1S54_01905 PF13292 1-deoxy-D-xylulose-5-phosphate synthase M1S54_01905 PF02779 Transketolase, pyrimidine binding domain M1S54_01905 PF02780 Transketolase, C-terminal domain M1S54_01910 PF00459 Inositol monophosphatase family M1S54_01915 PF00270 DEAD/DEAH box helicase M1S54_01915 PF12343 Cold shock protein DEAD box A M1S54_01915 PF03880 DbpA RNA binding domain M1S54_01915 PF00271 Helicase conserved C-terminal domain M1S54_01925 PF00005 ABC transporter M1S54_01930 PF02405 Permease MlaE M1S54_01940 PF05494 MlaC protein M1S54_01950 PF01544 CorA-like Mg2+ transporter protein M1S54_01955 PF03641 Possible lysine decarboxylase M1S54_01960 PF00293 NUDIX domain M1S54_01965 PF00156 Phosphoribosyl transferase domain M1S54_01970 PF00270 DEAD/DEAH box helicase M1S54_01970 PF00271 Helicase conserved C-terminal domain M1S54_01970 PF17191 RecG wedge domain M1S54_01985 PF01553 Acyltransferase M1S54_01995 PF00375 Sodium:dicarboxylate symporter family M1S54_02005 PF01926 50S ribosome-binding GTPase M1S54_02010 PF02082 Transcriptional regulator M1S54_02015 PF00970 Oxidoreductase FAD-binding domain M1S54_02015 PF00042 Globin M1S54_02015 PF00175 Oxidoreductase NAD-binding domain M1S54_02020 PF05872 Bacterial protein of unknown function (DUF853) M1S54_02025 PF01053 Cys/Met metabolism PLP-dependent enzyme M1S54_02030 PF00117 Glutamine amidotransferase class-I M1S54_02035 PF00338 Ribosomal protein S10p/S20e M1S54_02040 PF00297 Ribosomal protein L3 M1S54_02045 PF00573 Ribosomal protein L4/L1 family M1S54_02050 PF00276 Ribosomal protein L23 M1S54_02055 PF00181 Ribosomal Proteins L2, RNA binding domain M1S54_02055 PF03947 Ribosomal Proteins L2, C-terminal domain M1S54_02060 PF00203 Ribosomal protein S19 M1S54_02065 PF00237 Ribosomal protein L22p/L17e M1S54_02075 PF00252 Ribosomal protein L16p/L10e M1S54_02080 PF00831 Ribosomal L29 protein M1S54_02085 PF00366 Ribosomal protein S17 M1S54_02090 PF00238 Ribosomal protein L14p/L23e M1S54_02095 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 M1S54_02095 PF00467 KOW motif M1S54_02100 PF00281 Ribosomal protein L5 M1S54_02100 PF00673 ribosomal L5P family C-terminus M1S54_02105 PF00253 Ribosomal protein S14p/S29e M1S54_02110 PF00410 Ribosomal protein S8 M1S54_02115 PF00347 Ribosomal protein L6 M1S54_02120 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast M1S54_02125 PF00333 Ribosomal protein S5, N-terminal domain M1S54_02125 PF03719 Ribosomal protein S5, C-terminal domain M1S54_02130 PF00327 Ribosomal protein L30p/L7e M1S54_02135 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A M1S54_02140 PF00344 SecY translocase M1S54_02145 PF00444 Ribosomal protein L36 M1S54_02150 PF00416 Ribosomal protein S13/S18 M1S54_02155 PF00411 Ribosomal protein S11 M1S54_02160 PF00163 Ribosomal protein S4/S9 N-terminal domain M1S54_02160 PF01479 S4 domain M1S54_02165 PF01000 RNA polymerase Rpb3/RpoA insert domain M1S54_02165 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain M1S54_02165 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain M1S54_02170 PF01196 Ribosomal protein L17 M1S54_02175 PF00743 Flavin-binding monooxygenase-like M1S54_02180 PF00441 Acyl-CoA dehydrogenase, C-terminal domain M1S54_02180 PF02770 Acyl-CoA dehydrogenase, middle domain M1S54_02180 PF02771 Acyl-CoA dehydrogenase, N-terminal domain M1S54_02185 PF03937 Flavinator of succinate dehydrogenase M1S54_02215 PF09526 Probable metal-binding protein (DUF2387) M1S54_02220 PF01432 Peptidase family M3 M1S54_02225 PF00773 RNB domain M1S54_02225 PF17876 Cold shock domain M1S54_02225 PF08461 Ribonuclease R winged-helix domain M1S54_02225 PF08206 Ribonuclease B OB domain M1S54_02225 PF00575 S1 RNA binding domain M1S54_02270 PF01557 Fumarylacetoacetate (FAA) hydrolase family M1S54_02275 PF12833 Helix-turn-helix domain M1S54_02280 PF00892 EamA-like transporter family M1S54_02285 PF03631 Virulence factor BrkB M1S54_02290 PF03358 NADPH-dependent FMN reductase M1S54_02315 PF02130 Uncharacterized protein family UPF0054 M1S54_02320 PF02562 PhoH-like protein M1S54_02325 PF00919 Uncharacterized protein family UPF0004 M1S54_02325 PF04055 Radical SAM superfamily M1S54_02325 PF01938 TRAM domain M1S54_02330 PF10145 Phage-related minor tail protein M1S54_02330 PF01464 Transglycosylase SLT domain M1S54_02330 PF01551 Peptidase family M23 M1S54_02340 PF00056 lactate/malate dehydrogenase, NAD binding domain M1S54_02340 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain M1S54_02360 PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ M1S54_02365 PF01066 CDP-alcohol phosphatidyltransferase M1S54_02410 PF02771 Acyl-CoA dehydrogenase, N-terminal domain M1S54_02410 PF02770 Acyl-CoA dehydrogenase, middle domain M1S54_02410 PF00441 Acyl-CoA dehydrogenase, C-terminal domain M1S54_02415 PF17932 Tetracyclin repressor-like, C-terminal domain M1S54_02415 PF00440 Bacterial regulatory proteins, tetR family M1S54_02430 PF01039 Carboxyl transferase domain M1S54_02435 PF02771 Acyl-CoA dehydrogenase, N-terminal domain M1S54_02435 PF02770 Acyl-CoA dehydrogenase, middle domain M1S54_02435 PF00441 Acyl-CoA dehydrogenase, C-terminal domain M1S54_02445 PF02785 Biotin carboxylase C-terminal domain M1S54_02445 PF00289 Biotin carboxylase, N-terminal domain M1S54_02445 PF00364 Biotin-requiring enzyme M1S54_02445 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain M1S54_02455 PF04386 Stringent starvation protein B M1S54_02460 PF00043 Glutathione S-transferase, C-terminal domain M1S54_02460 PF13417 Glutathione S-transferase, N-terminal domain M1S54_02465 PF00380 Ribosomal protein S9/S16 M1S54_02470 PF00572 Ribosomal protein L13 M1S54_02475 PF04166 Pyridoxal phosphate biosynthetic protein PdxA M1S54_02480 PF00398 Ribosomal RNA adenine dimethylase M1S54_02485 PF00149 Calcineurin-like phosphoesterase M1S54_02505 PF13167 GTP-binding GTPase N-terminal M1S54_02505 PF01926 50S ribosome-binding GTPase M1S54_02505 PF16360 GTP-binding GTPase Middle Region M1S54_02515 PF13091 PLD-like domain M1S54_02520 PF10518 TAT (twin-arginine translocation) pathway signal sequence M1S54_02520 PF00149 Calcineurin-like phosphoesterase M1S54_02525 PF01389 OmpA-like transmembrane domain M1S54_02525 PF00691 OmpA family M1S54_02530 PF00990 Diguanylate cyclase, GGDEF domain M1S54_02530 PF17152 Periplasmic sensor domain M1S54_02565 PF07992 Pyridine nucleotide-disulphide oxidoreductase M1S54_02565 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain M1S54_02575 PF00753 Metallo-beta-lactamase superfamily M1S54_02575 PF04273 Putative phosphatase (DUF442) M1S54_02580 PF00561 alpha/beta hydrolase fold M1S54_02585 PF00085 Thioredoxin M1S54_02590 PF03061 Thioesterase superfamily M1S54_02600 PF04461 Protein of unknown function (DUF520) M1S54_02610 PF01266 FAD dependent oxidoreductase M1S54_02610 PF05430 S-adenosyl-L-methionine-dependent methyltransferase M1S54_02620 PF03795 YCII-related domain M1S54_02625 PF04279 Intracellular septation protein A M1S54_02630 PF02811 PHP domain M1S54_02635 PF01062 Bestrophin, RFP-TM, chloride channel M1S54_02640 PF04002 RadC-like JAB domain M1S54_02645 PF04127 DNA / pantothenate metabolism flavoprotein M1S54_02645 PF02441 Flavoprotein M1S54_02650 PF07549 SecD/SecF GG Motif M1S54_02650 PF02355 Protein export membrane protein M1S54_02655 PF13721 SecD export protein N-terminal TM region M1S54_02655 PF02355 Protein export membrane protein M1S54_02655 PF07549 SecD/SecF GG Motif M1S54_02660 PF02699 Preprotein translocase subunit M1S54_02665 PF01702 Queuine tRNA-ribosyltransferase M1S54_02680 PF02547 Queuosine biosynthesis protein M1S54_02690 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M1S54_02690 PF00512 His Kinase A (phospho-acceptor) domain M1S54_02690 PF07689 KaiB domain M1S54_02695 PF08335 GlnD PII-uridylyltransferase M1S54_02695 PF03710 Glutamate-ammonia ligase adenylyltransferase M1S54_02700 PF01063 Amino-transferase class IV M1S54_02715 PF01522 Polysaccharide deacetylase M1S54_02720 PF00535 Glycosyl transferase family 2 M1S54_02725 PF13439 Glycosyltransferase Family 4 M1S54_02725 PF00534 Glycosyl transferases group 1 M1S54_02750 PF17101 Stealth protein CR1, conserved region 1 M1S54_02750 PF11380 Stealth protein CR2, conserved region 2 M1S54_02750 PF17102 Stealth protein CR3, conserved region 3 M1S54_02755 PF01336 OB-fold nucleic acid binding domain M1S54_02755 PF02938 GAD domain M1S54_02755 PF00152 tRNA synthetases class II (D, K and N) M1S54_02765 PF00593 TonB dependent receptor M1S54_02765 PF07715 TonB-dependent Receptor Plug Domain M1S54_02785 PF06146 Phosphate-starvation-inducible E M1S54_02790 PF02798 Glutathione S-transferase, N-terminal domain M1S54_02790 PF00043 Glutathione S-transferase, C-terminal domain M1S54_02795 PF03466 LysR substrate binding domain M1S54_02795 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M1S54_02800 PF00441 Acyl-CoA dehydrogenase, C-terminal domain M1S54_02800 PF12806 Acetyl-CoA dehydrogenase C-terminal like M1S54_02800 PF02770 Acyl-CoA dehydrogenase, middle domain M1S54_02800 PF02771 Acyl-CoA dehydrogenase, N-terminal domain M1S54_02805 PF12806 Acetyl-CoA dehydrogenase C-terminal like M1S54_02805 PF02770 Acyl-CoA dehydrogenase, middle domain M1S54_02805 PF02771 Acyl-CoA dehydrogenase, N-terminal domain M1S54_02805 PF00441 Acyl-CoA dehydrogenase, C-terminal domain M1S54_02815 PF00672 HAMP domain M1S54_02815 PF00512 His Kinase A (phospho-acceptor) domain M1S54_02815 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M1S54_02820 PF00072 Response regulator receiver domain M1S54_02820 PF00486 Transcriptional regulatory protein, C terminal M1S54_02825 PF02696 Uncharacterized ACR, YdiU/UPF0061 family M1S54_02845 PF01923 Cobalamin adenosyltransferase M1S54_02850 PF07715 TonB-dependent Receptor Plug Domain M1S54_02850 PF00593 TonB dependent receptor M1S54_02855 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase M1S54_02860 PF00291 Pyridoxal-phosphate dependent enzyme M1S54_02885 PF00290 Tryptophan synthase alpha chain M1S54_02890 PF01039 Carboxyl transferase domain M1S54_02895 PF02875 Mur ligase family, glutamate ligase domain M1S54_02895 PF08245 Mur ligase middle domain M1S54_02910 PF00753 Metallo-beta-lactamase superfamily M1S54_02915 PF10417 C-terminal domain of 1-Cys peroxiredoxin M1S54_02915 PF00578 AhpC/TSA family M1S54_02920 PF01043 SecA preprotein cross-linking domain M1S54_02920 PF02810 SEC-C motif M1S54_02920 PF07517 SecA DEAD-like domain M1S54_02920 PF07516 SecA Wing and Scaffold domain M1S54_02930 PF07690 Major Facilitator Superfamily M1S54_02930 PF00083 Sugar (and other) transporter M1S54_02935 PF03006 Haemolysin-III related M1S54_02960 PF00378 Enoyl-CoA hydratase/isomerase M1S54_02960 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain M1S54_02960 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain M1S54_02965 PF00108 Thiolase, N-terminal domain M1S54_02965 PF02803 Thiolase, C-terminal domain M1S54_02970 PF02311 AraC-like ligand binding domain M1S54_02970 PF12833 Helix-turn-helix domain M1S54_02975 PF02515 CoA-transferase family III M1S54_02980 PF04966 Carbohydrate-selective porin, OprB family M1S54_02985 PF01011 PQQ enzyme repeat M1S54_02990 PF01077 Nitrite and sulphite reductase 4Fe-4S domain M1S54_02990 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain M1S54_03000 PF00893 Small Multidrug Resistance protein M1S54_03010 PF02803 Thiolase, C-terminal domain M1S54_03010 PF00108 Thiolase, N-terminal domain M1S54_03020 PF13505 Outer membrane protein beta-barrel domain M1S54_03020 PF00691 OmpA family M1S54_03030 PF01139 tRNA-splicing ligase RtcB M1S54_03035 PF00324 Amino acid permease M1S54_03040 PF08468 Methyltransferase small domain N-terminal M1S54_03040 PF05175 Methyltransferase small domain M1S54_03045 PF00860 Permease family M1S54_03050 PF00679 Elongation factor G C-terminus M1S54_03050 PF03144 Elongation factor Tu domain 2 M1S54_03050 PF00009 Elongation factor Tu GTP binding domain M1S54_03055 PF01741 Large-conductance mechanosensitive channel, MscL M1S54_03070 PF06827 Zinc finger found in FPG and IleRS M1S54_03070 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain M1S54_03070 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain M1S54_03075 PF02245 Methylpurine-DNA glycosylase (MPG) M1S54_03095 PF00724 NADH:flavin oxidoreductase / NADH oxidase family M1S54_03110 PF13098 Thioredoxin-like domain M1S54_03110 PF10411 Disulfide bond isomerase protein N-terminus M1S54_03115 PF01571 Aminomethyltransferase folate-binding domain M1S54_03125 PF04343 Protein of unknown function, DUF488 M1S54_03130 PF08274 PhnA Zinc-Ribbon M1S54_03130 PF03831 PhnA domain M1S54_03135 PF07411 Domain of unknown function (DUF1508) M1S54_03140 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) M1S54_03140 PF03129 Anticodon binding domain M1S54_03140 PF04073 Aminoacyl-tRNA editing domain M1S54_03145 PF00873 AcrB/AcrD/AcrF family M1S54_03160 PF00072 Response regulator receiver domain M1S54_03165 PF00072 Response regulator receiver domain M1S54_03170 PF01584 CheW-like domain M1S54_03175 PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term M1S54_03175 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain M1S54_03180 PF00072 Response regulator receiver domain M1S54_03180 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M1S54_03180 PF01584 CheW-like domain M1S54_03180 PF01627 Hpt domain M1S54_03190 PF07687 Peptidase dimerisation domain M1S54_03190 PF01546 Peptidase family M20/M25/M40 M1S54_03195 PF08085 Entericidin EcnA/B family M1S54_03205 PF04304 Protein of unknown function (DUF454) M1S54_03210 PF17969 L,D-transpeptidase C-terminal domain M1S54_03210 PF03734 L,D-transpeptidase catalytic domain M1S54_03250 PF00258 Flavodoxin M1S54_03250 PF00175 Oxidoreductase NAD-binding domain M1S54_03250 PF00667 FAD binding domain M1S54_03260 PF12805 FUSC-like inner membrane protein yccS M1S54_03265 PF07690 Major Facilitator Superfamily M1S54_03270 PF00881 Nitroreductase family M1S54_03285 PF01235 Sodium:alanine symporter family M1S54_03290 PF01734 Patatin-like phospholipase M1S54_03295 PF13291 ACT domain M1S54_03295 PF00291 Pyridoxal-phosphate dependent enzyme M1S54_03300 PF05992 SbmA/BacA-like family M1S54_03335 PF02934 GatB/GatE catalytic domain M1S54_03335 PF02637 GatB domain M1S54_03340 PF01425 Amidase M1S54_03345 PF02686 Glu-tRNAGln amidotransferase C subunit M1S54_03355 PF04085 rod shape-determining protein MreC M1S54_03360 PF04093 rod shape-determining protein MreD M1S54_03365 PF02545 Maf-like protein M1S54_03370 PF00575 S1 RNA binding domain M1S54_03370 PF10150 Ribonuclease E/G family M1S54_03380 PF06974 Protein of unknown function (DUF1298) M1S54_03380 PF03007 Wax ester synthase-like Acyl-CoA acyltransferase domain M1S54_03385 PF01507 Phosphoadenosine phosphosulfate reductase family M1S54_03400 PF02525 Flavodoxin-like fold M1S54_03420 PF02673 Bacitracin resistance protein BacA M1S54_03425 PF12833 Helix-turn-helix domain M1S54_03425 PF06719 AraC-type transcriptional regulator N-terminus M1S54_03430 PF08240 Alcohol dehydrogenase GroES-like domain M1S54_03430 PF14765 Polyketide synthase dehydratase M1S54_03430 PF00550 Phosphopantetheine attachment site M1S54_03430 PF08659 KR domain M1S54_03430 PF02801 Beta-ketoacyl synthase, C-terminal domain M1S54_03430 PF00698 Acyl transferase domain M1S54_03430 PF16197 Ketoacyl-synthetase C-terminal extension M1S54_03430 PF09277 Erythronolide synthase, docking M1S54_03430 PF08990 Erythronolide synthase docking M1S54_03430 PF00109 Beta-ketoacyl synthase, N-terminal domain M1S54_03435 PF01965 DJ-1/PfpI family M1S54_03445 PF00324 Amino acid permease M1S54_03450 PF04303 PrpF protein M1S54_03455 PF00348 Polyprenyl synthetase M1S54_03460 PF04237 YjbR M1S54_03465 PF01145 SPFH domain / Band 7 family M1S54_03475 PF01734 Patatin-like phospholipase M1S54_03495 PF00884 Sulfatase M1S54_03495 PF08019 Phosphoethanolamine transferase EptA/EptB M1S54_03500 PF00072 Response regulator receiver domain M1S54_03500 PF00486 Transcriptional regulatory protein, C terminal M1S54_03505 PF00512 His Kinase A (phospho-acceptor) domain M1S54_03505 PF08521 Two-component sensor kinase N-terminal M1S54_03505 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M1S54_03515 PF00909 Ammonium Transporter Family M1S54_03520 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M1S54_03520 PF03466 LysR substrate binding domain M1S54_03540 PF10458 Valyl tRNA synthetase tRNA binding arm M1S54_03540 PF00133 tRNA synthetases class I (I, L, M and V) M1S54_03540 PF08264 Anticodon-binding domain of tRNA M1S54_03560 PF01906 Putative heavy-metal-binding M1S54_03565 PF01906 Putative heavy-metal-binding M1S54_03570 PF02321 Outer membrane efflux protein M1S54_03575 PF00873 AcrB/AcrD/AcrF family M1S54_03580 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion M1S54_03580 PF00529 HlyD membrane-fusion protein of T1SS M1S54_03585 PF01569 PAP2 superfamily M1S54_03595 PF00348 Polyprenyl synthetase M1S54_03605 PF00829 Ribosomal prokaryotic L21 protein M1S54_03610 PF01016 Ribosomal L27 protein M1S54_03625 PF02403 Seryl-tRNA synthetase N-terminal domain M1S54_03625 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) M1S54_03630 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases M1S54_03630 PF10414 Sirohaem synthase dimerisation region M1S54_03630 PF14824 Sirohaem biosynthesis protein central M1S54_03635 PF00588 SpoU rRNA Methylase family M1S54_03640 PF01638 HxlR-like helix-turn-helix M1S54_03645 PF03358 NADPH-dependent FMN reductase M1S54_03650 PF13520 Amino acid permease M1S54_03655 PF00465 Iron-containing alcohol dehydrogenase M1S54_03665 PF03099 Biotin/lipoate A/B protein ligase family M1S54_03670 PF04359 Protein of unknown function (DUF493) M1S54_03675 PF04546 Sigma-70, non-essential region M1S54_03675 PF00140 Sigma-70 factor, region 1.2 M1S54_03675 PF04542 Sigma-70 region 2 M1S54_03675 PF04539 Sigma-70 region 3 M1S54_03675 PF04545 Sigma-70, region 4 M1S54_03675 PF03979 Sigma-70 factor, region 1.1 M1S54_03695 PF00581 Rhodanese-like domain M1S54_03695 PF17773 UPF0176 acylphosphatase like domain M1S54_03705 PF00285 Citrate synthase, C-terminal domain M1S54_03710 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit M1S54_03715 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit M1S54_03720 PF00890 FAD binding domain M1S54_03720 PF02910 Fumarate reductase flavoprotein C-term M1S54_03725 PF13085 2Fe-2S iron-sulfur cluster binding domain M1S54_03740 PF16078 2-oxoglutarate dehydrogenase N-terminus M1S54_03740 PF02779 Transketolase, pyrimidine binding domain M1S54_03740 PF00676 Dehydrogenase E1 component M1S54_03740 PF16870 2-oxoglutarate dehydrogenase C-terminal M1S54_03745 PF02817 e3 binding domain M1S54_03745 PF00364 Biotin-requiring enzyme M1S54_03745 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) M1S54_03750 PF07992 Pyridine nucleotide-disulphide oxidoreductase M1S54_03750 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain M1S54_03755 PF00549 CoA-ligase M1S54_03755 PF08442 ATP-grasp domain M1S54_03760 PF00549 CoA-ligase M1S54_03760 PF02629 CoA binding domain M1S54_03765 PF00579 tRNA synthetases class I (W and Y) M1S54_03770 PF05661 Protein of unknown function (DUF808) M1S54_03775 PF04228 Putative neutral zinc metallopeptidase M1S54_03780 PF00999 Sodium/hydrogen exchanger family M1S54_03795 PF09587 Bacterial capsule synthesis protein PGA_cap M1S54_03805 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain M1S54_03810 PF00582 Universal stress protein family M1S54_03815 PF00132 Bacterial transferase hexapeptide (six repeats) M1S54_03820 PF03449 Transcription elongation factor, N-terminal M1S54_03820 PF01272 Transcription elongation factor, GreA/GreB, C-term M1S54_03825 PF02142 MGS-like domain M1S54_03825 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain M1S54_03825 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain M1S54_03830 PF00117 Glutamine amidotransferase class-I M1S54_03830 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain M1S54_03845 PF01985 CRS1 / YhbY (CRM) domain M1S54_03850 PF01728 FtsJ-like methyltransferase M1S54_03855 PF17862 AAA+ lid domain M1S54_03855 PF06480 FtsH Extracellular M1S54_03855 PF01434 Peptidase family M41 M1S54_03855 PF00004 ATPase family associated with various cellular activities (AAA) M1S54_03860 PF00809 Pterin binding enzyme M1S54_03880 PF09423 PhoD-like phosphatase M1S54_03880 PF16655 PhoD-like phosphatase, N-terminal domain M1S54_03895 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain M1S54_03895 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain M1S54_03910 PF00083 Sugar (and other) transporter M1S54_03915 PF00370 FGGY family of carbohydrate kinases, N-terminal domain M1S54_03915 PF02782 FGGY family of carbohydrate kinases, C-terminal domain M1S54_03920 PF01266 FAD dependent oxidoreductase M1S54_03920 PF16901 C-terminal domain of alpha-glycerophosphate oxidase M1S54_03925 PF00821 Phosphoenolpyruvate carboxykinase C-terminal P-loop domain M1S54_03925 PF17297 Phosphoenolpyruvate carboxykinase N-terminal domain M1S54_03930 PF00781 Diacylglycerol kinase catalytic domain M1S54_03935 PF00149 Calcineurin-like phosphoesterase M1S54_03945 PF00166 Chaperonin 10 Kd subunit M1S54_03950 PF00118 TCP-1/cpn60 chaperonin family M1S54_03955 PF01219 Prokaryotic diacylglycerol kinase M1S54_03965 PF03009 Glycerophosphoryl diester phosphodiesterase family M1S54_03970 PF00873 AcrB/AcrD/AcrF family M1S54_03980 PF01435 Peptidase family M48 M1S54_03985 PF01464 Transglycosylase SLT domain M1S54_03990 PF01171 PP-loop family M1S54_04000 PF01464 Transglycosylase SLT domain M1S54_04000 PF00497 Bacterial extracellular solute-binding proteins, family 3 M1S54_04005 PF03449 Transcription elongation factor, N-terminal M1S54_04005 PF01272 Transcription elongation factor, GreA/GreB, C-term M1S54_04020 PF00501 AMP-binding enzyme M1S54_04020 PF00668 Condensation domain M1S54_04020 PF00550 Phosphopantetheine attachment site M1S54_04020 PF00975 Thioesterase domain M1S54_04020 PF13193 AMP-binding enzyme C-terminal domain M1S54_04050 PF00881 Nitroreductase family M1S54_04065 PF02595 Glycerate kinase family M1S54_04070 PF00384 Molybdopterin oxidoreductase M1S54_04075 PF02634 FdhD/NarQ family M1S54_04080 PF06803 Protein of unknown function (DUF1232) M1S54_04085 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain M1S54_04085 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain M1S54_04085 PF11890 Domain of unknown function (DUF3410) M1S54_04090 PF00152 tRNA synthetases class II (D, K and N) M1S54_04100 PF18073 Rubredoxin metal binding domain M1S54_04105 PF00324 Amino acid permease M1S54_04115 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain M1S54_04115 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain M1S54_04120 PF01678 Diaminopimelate epimerase M1S54_04125 PF01810 LysE type translocator M1S54_04130 PF00589 Phage integrase family M1S54_04130 PF02899 Phage integrase, N-terminal SAM-like domain M1S54_04135 PF01012 Electron transfer flavoprotein domain M1S54_04140 PF00766 Electron transfer flavoprotein FAD-binding domain M1S54_04140 PF01012 Electron transfer flavoprotein domain M1S54_04145 PF00521 DNA gyrase/topoisomerase IV, subunit A M1S54_04145 PF03989 DNA gyrase C-terminal domain, beta-propeller M1S54_04160 PF00535 Glycosyl transferase family 2 M1S54_04180 PF13533 Biotin-lipoyl like M1S54_04190 PF00266 Aminotransferase class-V M1S54_04205 PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 M1S54_04215 PF02687 FtsX-like permease family M1S54_04215 PF12704 MacB-like periplasmic core domain M1S54_04220 PF00005 ABC transporter M1S54_04225 PF13567 Domain of unknown function (DUF4131) M1S54_04225 PF03772 Competence protein M1S54_04225 PF00753 Metallo-beta-lactamase superfamily M1S54_04235 PF01343 Peptidase family S49 M1S54_04235 PF06965 Na+/H+ antiporter 1 M1S54_04240 PF12697 Alpha/beta hydrolase family M1S54_04245 PF00551 Formyl transferase M1S54_04250 PF00586 AIR synthase related protein, N-terminal domain M1S54_04250 PF02769 AIR synthase related protein, C-terminal domain M1S54_04255 PF01594 AI-2E family transporter M1S54_04260 PF00308 Bacterial dnaA protein M1S54_04260 PF08299 Bacterial dnaA protein helix-turn-helix M1S54_04260 PF11638 DnaA N-terminal domain M1S54_04290 PF08032 RNA 2'-O ribose methyltransferase substrate binding M1S54_04290 PF00588 SpoU rRNA Methylase family M1S54_04295 PF00316 Fructose-1-6-bisphosphatase, N-terminal domain M1S54_04305 PF00691 OmpA family M1S54_04310 PF07676 WD40-like Beta Propeller Repeat M1S54_04310 PF04052 TolB amino-terminal domain M1S54_04320 PF02472 Biopolymer transport protein ExbD/TolR M1S54_04325 PF01618 MotA/TolQ/ExbB proton channel family M1S54_04330 PF03061 Thioesterase superfamily M1S54_04335 PF07687 Peptidase dimerisation domain M1S54_04335 PF01546 Peptidase family M20/M25/M40 M1S54_04340 PF17864 RuvB AAA lid domain M1S54_04340 PF05491 RuvB C-terminal winged helix domain M1S54_04340 PF05496 Holliday junction DNA helicase RuvB P-loop domain M1S54_04345 PF07499 RuvA, C-terminal domain M1S54_04345 PF01330 RuvA N terminal domain M1S54_04350 PF01966 HD domain M1S54_04355 PF18076 Formylglycinamide ribonucleotide amidotransferase N-terminal M1S54_04355 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain M1S54_04355 PF02769 AIR synthase related protein, C-terminal domain M1S54_04360 PF07690 Major Facilitator Superfamily M1S54_04365 PF01784 NIF3 (NGG1p interacting factor 3) M1S54_04370 PF00378 Enoyl-CoA hydratase/isomerase M1S54_04375 PF01467 Cytidylyltransferase-like M1S54_04375 PF00293 NUDIX domain M1S54_04385 PF00578 AhpC/TSA family M1S54_04400 PF06508 Queuosine biosynthesis protein QueC M1S54_04410 PF00132 Bacterial transferase hexapeptide (six repeats) M1S54_04410 PF14602 Hexapeptide repeat of succinyl-transferase M1S54_04410 PF14805 Tetrahydrodipicolinate N-succinyltransferase N-terminal M1S54_04420 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M1S54_04420 PF03466 LysR substrate binding domain M1S54_04425 PF12857 TOBE-like domain M1S54_04425 PF00005 ABC transporter M1S54_04430 PF00528 Binding-protein-dependent transport system inner membrane component M1S54_04435 PF00528 Binding-protein-dependent transport system inner membrane component M1S54_04450 PF01063 Amino-transferase class IV M1S54_04455 PF02618 YceG-like family M1S54_04460 PF02223 Thymidylate kinase M1S54_04470 PF00890 FAD binding domain M1S54_04470 PF02910 Fumarate reductase flavoprotein C-term M1S54_04475 PF13180 PDZ domain M1S54_04485 PF06421 GTP-binding protein LepA C-terminus M1S54_04485 PF00009 Elongation factor Tu GTP binding domain M1S54_04485 PF03144 Elongation factor Tu domain 2 M1S54_04485 PF00679 Elongation factor G C-terminus M1S54_04490 PF10502 Signal peptidase, peptidase S26 M1S54_04500 PF14622 Ribonuclease-III-like M1S54_04500 PF00035 Double-stranded RNA binding motif M1S54_04505 PF07650 KH domain M1S54_04505 PF01926 50S ribosome-binding GTPase M1S54_04515 PF11967 Recombination protein O N terminal M1S54_04515 PF02565 Recombination protein O C terminal M1S54_04520 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ M1S54_04525 PF06175 tRNA-(MS[2]IO[6]A)-hydroxylase (MiaE) M1S54_04530 PF00106 short chain dehydrogenase M1S54_04560 PF00155 Aminotransferase class I and II M1S54_04570 PF00990 Diguanylate cyclase, GGDEF domain M1S54_04570 PF17151 Periplasmic sensor domain M1S54_04580 PF00271 Helicase conserved C-terminal domain M1S54_04580 PF04851 Type III restriction enzyme, res subunit M1S54_04580 PF02151 UvrB/uvrC motif M1S54_04580 PF12344 Ultra-violet resistance protein B M1S54_04580 PF17757 UvrB interaction domain M1S54_04590 PF00892 EamA-like transporter family M1S54_04595 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain M1S54_04595 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain M1S54_04610 PF01018 GTP1/OBG M1S54_04610 PF01926 50S ribosome-binding GTPase M1S54_04615 PF00696 Amino acid kinase family M1S54_04615 PF01472 PUA domain M1S54_04625 PF07759 Protein of unknown function (DUF1615) M1S54_04630 PF01207 Dihydrouridine synthase (Dus) M1S54_04635 PF03060 Nitronate monooxygenase M1S54_04650 PF02350 UDP-N-acetylglucosamine 2-epimerase M1S54_04680 PF00875 DNA photolyase M1S54_04680 PF03441 FAD binding domain of DNA photolyase M1S54_04685 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase M1S54_04690 PF07992 Pyridine nucleotide-disulphide oxidoreductase M1S54_04695 PF07943 Penicillin-binding protein 5, C-terminal domain M1S54_04695 PF00768 D-alanyl-D-alanine carboxypeptidase M1S54_04705 PF03971 Monomeric isocitrate dehydrogenase M1S54_04710 PF00849 RNA pseudouridylate synthase M1S54_04715 PF00180 Isocitrate/isopropylmalate dehydrogenase M1S54_04735 PF06779 Uncharacterised MFS-type transporter YbfB M1S54_04740 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M1S54_04740 PF03466 LysR substrate binding domain M1S54_04745 PF00375 Sodium:dicarboxylate symporter family M1S54_04750 PF02567 Phenazine biosynthesis-like protein M1S54_04755 PF05193 Peptidase M16 inactive domain M1S54_04755 PF00675 Insulinase (Peptidase family M16) M1S54_04780 PF02581 Thiamine monophosphate synthase M1S54_04785 PF00202 Aminotransferase class-III M1S54_04795 PF00849 RNA pseudouridylate synthase M1S54_04800 PF18337 RapA N-terminal Tudor like domain M1S54_04800 PF00271 Helicase conserved C-terminal domain M1S54_04800 PF00176 SNF2 family N-terminal domain M1S54_04800 PF12137 RNA polymerase recycling family C-terminal M1S54_04800 PF18339 RapA N-terminal Tudor like domain 1 M1S54_04810 PF00440 Bacterial regulatory proteins, tetR family M1S54_04815 PF00970 Oxidoreductase FAD-binding domain M1S54_04815 PF00111 2Fe-2S iron-sulfur cluster binding domain M1S54_04815 PF00175 Oxidoreductase NAD-binding domain M1S54_04820 PF00487 Fatty acid desaturase M1S54_04830 PF17754 MftR C-terminal domain M1S54_04830 PF00440 Bacterial regulatory proteins, tetR family M1S54_04840 PF00202 Aminotransferase class-III M1S54_04845 PF00282 Pyridoxal-dependent decarboxylase conserved domain M1S54_04850 PF00171 Aldehyde dehydrogenase family M1S54_04855 PF01037 Lrp/AsnC ligand binding domain M1S54_04860 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain M1S54_04860 PF00205 Thiamine pyrophosphate enzyme, central domain M1S54_04860 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain M1S54_04865 PF00324 Amino acid permease M1S54_04870 PF12849 PBP superfamily domain M1S54_04875 PF00528 Binding-protein-dependent transport system inner membrane component M1S54_04880 PF00528 Binding-protein-dependent transport system inner membrane component M1S54_04885 PF00005 ABC transporter M1S54_04890 PF08496 Peptidase family S49 N-terminal M1S54_04890 PF01343 Peptidase family S49 M1S54_04905 PF00206 Lyase M1S54_04905 PF08328 Adenylosuccinate lyase C-terminal M1S54_04910 PF04356 Protein of unknown function (DUF489) M1S54_04920 PF13344 Haloacid dehalogenase-like hydrolase M1S54_04920 PF00293 NUDIX domain M1S54_04925 PF00132 Bacterial transferase hexapeptide (six repeats) M1S54_04930 PF07943 Penicillin-binding protein 5, C-terminal domain M1S54_04930 PF00768 D-alanyl-D-alanine carboxypeptidase M1S54_04945 PF01975 Survival protein SurE M1S54_04950 PF01476 LysM domain M1S54_04950 PF01551 Peptidase family M23 M1S54_04955 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M1S54_04955 PF03466 LysR substrate binding domain M1S54_04960 PF13654 AAA domain M1S54_04960 PF05362 Lon protease (S16) C-terminal proteolytic domain M1S54_04965 PF07690 Major Facilitator Superfamily M1S54_04970 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily M1S54_04975 PF13593 SBF-like CPA transporter family (DUF4137) M1S54_04980 PF01197 Ribosomal protein L31 M1S54_04995 PF04055 Radical SAM superfamily M1S54_05000 PF01132 Elongation factor P (EF-P) OB domain M1S54_05000 PF08207 Elongation factor P (EF-P) KOW-like domain M1S54_05000 PF09285 Elongation factor P, C-terminal M1S54_05005 PF02554 Carbon starvation protein CstA M1S54_05005 PF13722 5TM C-terminal transporter carbon starvation CstA M1S54_05010 PF04328 Selenoprotein, putative M1S54_05045 PF17853 GGDEF-like domain M1S54_05045 PF13556 PucR C-terminal helix-turn-helix domain M1S54_05045 PF06018 CodY GAF-like domain M1S54_05060 PF00171 Aldehyde dehydrogenase family M1S54_05065 PF00324 Amino acid permease M1S54_05070 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M1S54_05070 PF03466 LysR substrate binding domain M1S54_05075 PF02028 BCCT, betaine/carnitine/choline family transporter M1S54_05080 PF02028 BCCT, betaine/carnitine/choline family transporter M1S54_05085 PF00355 Rieske [2Fe-2S] domain M1S54_05085 PF00848 Ring hydroxylating alpha subunit (catalytic domain) M1S54_05090 PF00171 Aldehyde dehydrogenase family M1S54_05100 PF07992 Pyridine nucleotide-disulphide oxidoreductase M1S54_05100 PF18113 Rubredoxin binding C-terminal domain M1S54_05105 PF05430 S-adenosyl-L-methionine-dependent methyltransferase M1S54_05105 PF01266 FAD dependent oxidoreductase M1S54_05125 PF00892 EamA-like transporter family M1S54_05135 PF02604 Antitoxin Phd_YefM, type II toxin-antitoxin system M1S54_05140 PF00083 Sugar (and other) transporter M1S54_05145 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain M1S54_05145 PF13378 Enolase C-terminal domain-like M1S54_05150 PF08240 Alcohol dehydrogenase GroES-like domain M1S54_05150 PF08990 Erythronolide synthase docking M1S54_05150 PF08659 KR domain M1S54_05150 PF02801 Beta-ketoacyl synthase, C-terminal domain M1S54_05150 PF00109 Beta-ketoacyl synthase, N-terminal domain M1S54_05150 PF16197 Ketoacyl-synthetase C-terminal extension M1S54_05150 PF14765 Polyketide synthase dehydratase M1S54_05150 PF09277 Erythronolide synthase, docking M1S54_05150 PF00698 Acyl transferase domain M1S54_05150 PF00550 Phosphopantetheine attachment site M1S54_05155 PF00440 Bacterial regulatory proteins, tetR family M1S54_05175 PF02678 Pirin M1S54_05175 PF17954 Quercetinase C-terminal cupin domain M1S54_05185 PF13309 HTH domain M1S54_05185 PF08348 YheO-like PAS domain M1S54_05195 PF00501 AMP-binding enzyme M1S54_05195 PF13193 AMP-binding enzyme C-terminal domain M1S54_05195 PF00668 Condensation domain M1S54_05195 PF00550 Phosphopantetheine attachment site M1S54_05200 PF00975 Thioesterase domain M1S54_05200 PF00668 Condensation domain M1S54_05200 PF13193 AMP-binding enzyme C-terminal domain M1S54_05200 PF00501 AMP-binding enzyme M1S54_05200 PF00550 Phosphopantetheine attachment site M1S54_05205 PF01032 FecCD transport family M1S54_05210 PF01032 FecCD transport family M1S54_05215 PF00005 ABC transporter M1S54_05220 PF01497 Periplasmic binding protein M1S54_05225 PF07715 TonB-dependent Receptor Plug Domain M1S54_05225 PF00593 TonB dependent receptor M1S54_05230 PF13434 L-lysine 6-monooxygenase (NADPH-requiring) M1S54_05235 PF00501 AMP-binding enzyme M1S54_05235 PF00668 Condensation domain M1S54_05235 PF00550 Phosphopantetheine attachment site M1S54_05240 PF13193 AMP-binding enzyme C-terminal domain M1S54_05240 PF00501 AMP-binding enzyme M1S54_05245 PF00857 Isochorismatase family M1S54_05245 PF00550 Phosphopantetheine attachment site M1S54_05250 PF00282 Pyridoxal-dependent decarboxylase conserved domain M1S54_05260 PF00005 ABC transporter M1S54_05265 PF00005 ABC transporter M1S54_05270 PF00975 Thioesterase domain M1S54_05280 PF00425 chorismate binding enzyme M1S54_05290 PF01208 Uroporphyrinogen decarboxylase (URO-D) M1S54_05295 PF05675 Protein of unknown function (DUF817) M1S54_05310 PF00144 Beta-lactamase M1S54_05320 PF01227 GTP cyclohydrolase I M1S54_05325 PF01799 [2Fe-2S] binding domain M1S54_05325 PF00111 2Fe-2S iron-sulfur cluster binding domain M1S54_05330 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain M1S54_05330 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase M1S54_05345 PF00218 Indole-3-glycerol phosphate synthase M1S54_05350 PF02885 Glycosyl transferase family, helical bundle domain M1S54_05350 PF00591 Glycosyl transferase family, a/b domain M1S54_05355 PF07715 TonB-dependent Receptor Plug Domain M1S54_05355 PF00593 TonB dependent receptor M1S54_05360 PF11838 ERAP1-like C-terminal domain M1S54_05360 PF01433 Peptidase family M1 domain M1S54_05365 PF00117 Glutamine amidotransferase class-I M1S54_05710 PF13356 Arm DNA-binding domain M1S54_05710 PF00589 Phage integrase family M1S54_05720 PF00854 POT family M1S54_05725 PF00120 Glutamine synthetase, catalytic domain M1S54_05725 PF03951 Glutamine synthetase, beta-Grasp domain M1S54_05730 PF04345 Chorismate lyase M1S54_05735 PF01040 UbiA prenyltransferase family M1S54_05770 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain M1S54_05770 PF02777 Iron/manganese superoxide dismutases, C-terminal domain M1S54_05775 PF01784 NIF3 (NGG1p interacting factor 3) M1S54_05780 PF13180 PDZ domain M1S54_05785 PF12627 Probable RNA and SrmB- binding site of polymerase A M1S54_05785 PF01743 Poly A polymerase head domain M1S54_05790 PF03949 Malic enzyme, NAD binding domain M1S54_05790 PF01515 Phosphate acetyl/butaryl transferase M1S54_05790 PF00390 Malic enzyme, N-terminal domain M1S54_05795 PF00563 EAL domain M1S54_05795 PF03707 Bacterial signalling protein N terminal repeat M1S54_05795 PF00990 Diguanylate cyclase, GGDEF domain M1S54_05800 PF04452 RNA methyltransferase M1S54_05805 PF02219 Methylenetetrahydrofolate reductase M1S54_05810 PF00670 S-adenosyl-L-homocysteine hydrolase, NAD binding domain M1S54_05810 PF05221 S-adenosyl-L-homocysteine hydrolase M1S54_05825 PF00441 Acyl-CoA dehydrogenase, C-terminal domain M1S54_05825 PF09317 Domain of unknown function (DUF1974) M1S54_05825 PF02771 Acyl-CoA dehydrogenase, N-terminal domain M1S54_05830 PF04055 Radical SAM superfamily M1S54_05835 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain M1S54_05835 PF07992 Pyridine nucleotide-disulphide oxidoreductase M1S54_05845 PF07690 Major Facilitator Superfamily M1S54_05855 PF00557 Metallopeptidase family M24 M1S54_05860 PF00318 Ribosomal protein S2 M1S54_05865 PF00889 Elongation factor TS M1S54_05875 PF12833 Helix-turn-helix domain M1S54_05895 PF03330 Lytic transglycolase M1S54_05895 PF05036 Sporulation related domain M1S54_05900 PF13406 Transglycosylase SLT domain M1S54_05905 PF01098 Cell cycle protein M1S54_05915 PF14489 QueF-like protein M1S54_05915 PF14819 Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term M1S54_05920 PF01061 ABC-2 type transporter M1S54_05925 PF00005 ABC transporter M1S54_05955 PF00464 Serine hydroxymethyltransferase M1S54_05960 PF02321 Outer membrane efflux protein M1S54_05965 PF00873 AcrB/AcrD/AcrF family M1S54_05970 PF13533 Biotin-lipoyl like M1S54_05975 PF03466 LysR substrate binding domain M1S54_05975 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M1S54_05980 PF00497 Bacterial extracellular solute-binding proteins, family 3 M1S54_05985 PF00528 Binding-protein-dependent transport system inner membrane component M1S54_05990 PF00528 Binding-protein-dependent transport system inner membrane component M1S54_05995 PF00005 ABC transporter M1S54_06000 PF00893 Small Multidrug Resistance protein M1S54_06005 PF00037 4Fe-4S binding domain M1S54_06010 PF01136 Peptidase family U32 M1S54_06010 PF16325 Peptidase family U32 C-terminal domain M1S54_06015 PF00155 Aminotransferase class I and II M1S54_06015 PF00392 Bacterial regulatory proteins, gntR family M1S54_06020 PF02567 Phenazine biosynthesis-like protein M1S54_06025 PF00175 Oxidoreductase NAD-binding domain M1S54_06025 PF00970 Oxidoreductase FAD-binding domain M1S54_06030 PF01980 tRNA-methyltransferase O M1S54_06030 PF18389 TrmO C-terminal domain M1S54_06040 PF00437 Type II/IV secretion system protein M1S54_06040 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain M1S54_06050 PF00072 Response regulator receiver domain M1S54_06050 PF00486 Transcriptional regulatory protein, C terminal M1S54_06055 PF08521 Two-component sensor kinase N-terminal M1S54_06055 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M1S54_06055 PF00512 His Kinase A (phospho-acceptor) domain M1S54_06065 PF00293 NUDIX domain M1S54_06075 PF00912 Transglycosylase M1S54_06075 PF00905 Penicillin binding protein transpeptidase domain M1S54_06075 PF14814 Bifunctional transglycosylase second domain M1S54_06080 PF01513 ATP-NAD kinase M1S54_06085 PF07023 Protein of unknown function (DUF1315) M1S54_06090 PF02885 Glycosyl transferase family, helical bundle domain M1S54_06090 PF00591 Glycosyl transferase family, a/b domain M1S54_06095 PF00375 Sodium:dicarboxylate symporter family M1S54_06100 PF00441 Acyl-CoA dehydrogenase, C-terminal domain M1S54_06100 PF02770 Acyl-CoA dehydrogenase, middle domain M1S54_06100 PF02771 Acyl-CoA dehydrogenase, N-terminal domain M1S54_06105 PF00756 Putative esterase M1S54_06110 PF01817 Chorismate mutase type II M1S54_06110 PF00800 Prephenate dehydratase M1S54_06110 PF01842 ACT domain M1S54_06115 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) M1S54_06125 PF07687 Peptidase dimerisation domain M1S54_06125 PF01546 Peptidase family M20/M25/M40 M1S54_06130 PF12706 Beta-lactamase superfamily domain M1S54_06140 PF03883 Peroxide stress protein YaaA M1S54_06150 PF05690 Thiazole biosynthesis protein ThiG M1S54_06160 PF04241 Protein of unknown function (DUF423) M1S54_06165 PF04545 Sigma-70, region 4 M1S54_06165 PF00140 Sigma-70 factor, region 1.2 M1S54_06165 PF04542 Sigma-70 region 2 M1S54_06180 PF00313 'Cold-shock' DNA-binding domain M1S54_06185 PF00270 DEAD/DEAH box helicase M1S54_06185 PF00271 Helicase conserved C-terminal domain M1S54_06195 PF00881 Nitroreductase family M1S54_06200 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus M1S54_06200 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus M1S54_06210 PF00589 Phage integrase family M1S54_06550 PF01180 Dihydroorotate dehydrogenase M1S54_06555 PF02674 Colicin V production protein M1S54_06560 PF00156 Phosphoribosyl transferase domain M1S54_06575 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain M1S54_06575 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain M1S54_06580 PF01435 Peptidase family M48 M1S54_06585 PF09424 Yqey-like protein M1S54_06590 PF01165 Ribosomal protein S21 M1S54_06595 PF00814 Glycoprotease family M1S54_06615 PF00069 Protein kinase domain M1S54_06640 PF03466 LysR substrate binding domain M1S54_06640 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M1S54_06645 PF00202 Aminotransferase class-III M1S54_06650 PF00171 Aldehyde dehydrogenase family M1S54_06655 PF00324 Amino acid permease M1S54_06685 PF04076 Bacterial OB fold (BOF) protein M1S54_06710 PF00561 alpha/beta hydrolase fold M1S54_06715 PF03616 Sodium/glutamate symporter M1S54_06725 PF00392 Bacterial regulatory proteins, gntR family M1S54_06725 PF07729 FCD domain M1S54_06775 PF08946 Osmosensory transporter coiled coil M1S54_06775 PF00083 Sugar (and other) transporter M1S54_06800 PF00155 Aminotransferase class I and II M1S54_06810 PF13610 DDE domain M1S54_06825 PF00132 Bacterial transferase hexapeptide (six repeats) M1S54_06835 PF00893 Small Multidrug Resistance protein M1S54_06840 PF00809 Pterin binding enzyme M1S54_06855 PF07091 Ribosomal RNA methyltransferase (FmrO) M1S54_06870 PF12848 ABC transporter M1S54_06870 PF00005 ABC transporter M1S54_06875 PF01636 Phosphotransferase enzyme family M1S54_06885 PF13817 IS66 C-terminal element M1S54_06885 PF13005 zinc-finger binding domain of transposase IS66 M1S54_06885 PF13007 Transposase C of IS166 homeodomain M1S54_06885 PF03050 Transposase IS66 family M1S54_06900 PF13610 DDE domain M1S54_06915 PF00375 Sodium:dicarboxylate symporter family M1S54_06925 PF00753 Metallo-beta-lactamase superfamily M1S54_06925 PF16123 Hydroxyacylglutathione hydrolase C-terminus M1S54_06930 PF00528 Binding-protein-dependent transport system inner membrane component M1S54_06935 PF09383 NIL domain M1S54_06935 PF00005 ABC transporter M1S54_06940 PF03180 NLPA lipoprotein M1S54_06945 PF02843 Phosphoribosylglycinamide synthetase, C domain M1S54_06945 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain M1S54_06945 PF02844 Phosphoribosylglycinamide synthetase, N domain M1S54_06950 PF02142 MGS-like domain M1S54_06950 PF01808 AICARFT/IMPCHase bienzyme M1S54_06955 PF02954 Bacterial regulatory protein, Fis family M1S54_06975 PF13932 GidA associated domain M1S54_06975 PF01134 Glucose inhibited division protein A M1S54_06985 PF14403 Circularly permuted ATP-grasp type 2 M1S54_06995 PF08379 Bacterial transglutaminase-like N-terminal region M1S54_06995 PF01841 Transglutaminase-like superfamily M1S54_07005 PF00842 Alanine racemase, C-terminal domain M1S54_07005 PF01168 Alanine racemase, N-terminal domain M1S54_07010 PF00772 DnaB-like helicase N terminal domain M1S54_07010 PF03796 DnaB-like helicase C terminal domain M1S54_07015 PF03948 Ribosomal protein L9, C-terminal domain M1S54_07015 PF01281 Ribosomal protein L9, N-terminal domain M1S54_07020 PF01084 Ribosomal protein S18 M1S54_07025 PF01250 Ribosomal protein S6 M1S54_07030 PF01040 UbiA prenyltransferase family M1S54_07035 PF03626 Prokaryotic Cytochrome C oxidase subunit IV M1S54_07040 PF00510 Cytochrome c oxidase subunit III M1S54_07045 PF00115 Cytochrome C and Quinol oxidase polypeptide I M1S54_07050 PF00116 Cytochrome C oxidase subunit II, periplasmic domain M1S54_07050 PF06481 COX Aromatic Rich Motif M1S54_07060 PF00391 PEP-utilising enzyme, mobile domain M1S54_07060 PF02896 PEP-utilising enzyme, TIM barrel domain M1S54_07060 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain M1S54_07065 PF03618 Kinase/pyrophosphorylase M1S54_07075 PF01522 Polysaccharide deacetylase M1S54_07075 PF14883 Hypothetical glycosyl hydrolase family 13 M1S54_07080 PF00535 Glycosyl transferase family 2 M1S54_07085 PF13994 PgaD-like protein M1S54_07095 PF00296 Luciferase-like monooxygenase M1S54_07110 PF03466 LysR substrate binding domain M1S54_07110 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M1S54_07120 PF03462 PCRF domain M1S54_07120 PF00472 RF-1 domain M1S54_07125 PF17827 PrmC N-terminal domain M1S54_07125 PF13847 Methyltransferase domain M1S54_07130 PF00528 Binding-protein-dependent transport system inner membrane component M1S54_07135 PF09084 NMT1/THI5 like M1S54_07140 PF12833 Helix-turn-helix domain M1S54_07145 PF00106 short chain dehydrogenase M1S54_07150 PF02770 Acyl-CoA dehydrogenase, middle domain M1S54_07150 PF00441 Acyl-CoA dehydrogenase, C-terminal domain M1S54_07150 PF02771 Acyl-CoA dehydrogenase, N-terminal domain M1S54_07155 PF00501 AMP-binding enzyme M1S54_07155 PF13193 AMP-binding enzyme C-terminal domain M1S54_07160 PF01613 Flavin reductase like domain M1S54_07165 PF00899 ThiF family M1S54_07170 PF03109 ABC1 family M1S54_07185 PF03814 Potassium-transporting ATPase A subunit M1S54_07195 PF02669 K+-transporting ATPase, c chain M1S54_07200 PF13493 Domain of unknown function (DUF4118) M1S54_07200 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M1S54_07200 PF00512 His Kinase A (phospho-acceptor) domain M1S54_07200 PF02702 Osmosensitive K+ channel His kinase sensor domain M1S54_07205 PF00072 Response regulator receiver domain M1S54_07205 PF00486 Transcriptional regulatory protein, C terminal M1S54_07210 PF00120 Glutamine synthetase, catalytic domain M1S54_07220 PF03232 Ubiquinone biosynthesis protein COQ7 M1S54_07225 PF07690 Major Facilitator Superfamily M1S54_07230 PF01103 Surface antigen M1S54_07230 PF07244 Surface antigen variable number repeat M1S54_07230 PF17243 POTRA domain TamA domain 1 M1S54_07245 PF00330 Aconitase family (aconitate hydratase) M1S54_07245 PF06434 Aconitate hydratase 2 N-terminus M1S54_07245 PF11791 Aconitate B N-terminal domain M1S54_07255 PF00027 Cyclic nucleotide-binding domain M1S54_07255 PF00520 Ion transport protein M1S54_07260 PF07690 Major Facilitator Superfamily M1S54_07355 PF10124 Mu-like prophage major head subunit gpT M1S54_07370 PF05069 Phage virion morphogenesis family M1S54_07375 PF04233 Phage Mu protein F like protein M1S54_07380 PF06074 Protein of unknown function (DUF935) M1S54_07395 PF03237 Terminase-like family M1S54_07400 PF11985 Protein of unknown function (DUF3486) M1S54_07430 PF10502 Signal peptidase, peptidase S26 M1S54_07460 PF01471 Putative peptidoglycan binding domain M1S54_07460 PF13401 AAA domain M1S54_07490 PF00216 Bacterial DNA-binding protein M1S54_07535 PF03466 LysR substrate binding domain M1S54_07535 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M1S54_07540 PF04284 Protein of unknown function (DUF441) M1S54_07550 PF00849 RNA pseudouridylate synthase M1S54_07550 PF01479 S4 domain M1S54_07565 PF01479 S4 domain M1S54_07565 PF00849 RNA pseudouridylate synthase M1S54_07570 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE M1S54_07575 PF08676 MutL C terminal dimerisation domain M1S54_07575 PF01119 DNA mismatch repair protein, C-terminal domain M1S54_07585 PF17209 Hfq protein M1S54_07595 PF00881 Nitroreductase family M1S54_07605 PF00149 Calcineurin-like phosphoesterase M1S54_07610 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD M1S54_07615 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain M1S54_07615 PF00749 tRNA synthetases class I (E and Q), catalytic domain M1S54_07620 PF00117 Glutamine amidotransferase class-I M1S54_07620 PF00958 GMP synthase C terminal domain M1S54_07620 PF02540 NAD synthase M1S54_07625 PF05985 Ethanolamine ammonia-lyase light chain (EutC) M1S54_07630 PF06751 Ethanolamine ammonia lyase large subunit (EutB) M1S54_07635 PF13520 Amino acid permease M1S54_07640 PF00171 Aldehyde dehydrogenase family M1S54_07655 PF00465 Iron-containing alcohol dehydrogenase M1S54_07660 PF14493 Helix-turn-helix domain M1S54_07660 PF05970 PIF1-like helicase M1S54_07670 PF06445 GyrI-like small molecule binding domain M1S54_07675 PF02110 Hydroxyethylthiazole kinase family M1S54_07690 PF11940 Domain of unknown function (DUF3458) Ig-like fold M1S54_07690 PF17432 Domain of unknown function (DUF3458_C) ARM repeats M1S54_07690 PF01433 Peptidase family M1 domain M1S54_07700 PF00106 short chain dehydrogenase M1S54_07710 PF01817 Chorismate mutase type II M1S54_07715 PF01037 Lrp/AsnC ligand binding domain M1S54_07730 PF00440 Bacterial regulatory proteins, tetR family M1S54_07735 PF00593 TonB dependent receptor M1S54_07735 PF07715 TonB-dependent Receptor Plug Domain M1S54_07740 PF00924 Mechanosensitive ion channel M1S54_07795 PF00005 ABC transporter M1S54_07795 PF12848 ABC transporter M1S54_07800 PF00582 Universal stress protein family M1S54_07825 PF00690 Cation transporter/ATPase, N-terminus M1S54_07825 PF00689 Cation transporting ATPase, C-terminus M1S54_07830 PF02308 MgtC family M1S54_07835 PF03594 Benzoate membrane transport protein M1S54_07840 PF01037 Lrp/AsnC ligand binding domain M1S54_07845 PF01810 LysE type translocator M1S54_07850 PF00923 Transaldolase/Fructose-6-phosphate aldolase M1S54_07855 PF03466 LysR substrate binding domain M1S54_07855 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M1S54_07865 PF02803 Thiolase, C-terminal domain M1S54_07865 PF00108 Thiolase, N-terminal domain M1S54_07875 PF01575 MaoC like domain M1S54_07880 PF00144 Beta-lactamase M1S54_07890 PF07690 Major Facilitator Superfamily M1S54_07895 PF12170 DNA polymerase III tau subunit V interacting with alpha M1S54_07895 PF12168 DNA polymerase III subunits tau domain IV DnaB-binding M1S54_07895 PF12169 DNA polymerase III subunits gamma and tau domain III M1S54_07900 PF04185 Phosphoesterase family M1S54_07900 PF05506 Domain of unknown function (DUF756) M1S54_07905 PF03061 Thioesterase superfamily M1S54_07910 PF00465 Iron-containing alcohol dehydrogenase M1S54_07920 PF01451 Low molecular weight phosphotyrosine protein phosphatase M1S54_07925 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain M1S54_07925 PF01565 FAD binding domain M1S54_07940 PF01645 Conserved region in glutamate synthase M1S54_07960 PF12832 MFS_1 like family M1S54_07970 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain M1S54_07970 PF02785 Biotin carboxylase C-terminal domain M1S54_07970 PF00289 Biotin carboxylase, N-terminal domain M1S54_07975 PF00364 Biotin-requiring enzyme M1S54_07980 PF01220 Dehydroquinase class II M1S54_07985 PF13438 Domain of unknown function (DUF4113) M1S54_07985 PF11799 impB/mucB/samB family C-terminal domain M1S54_07985 PF00817 impB/mucB/samB family M1S54_07995 PF00005 ABC transporter M1S54_08000 PF00072 Response regulator receiver domain M1S54_08000 PF00486 Transcriptional regulatory protein, C terminal M1S54_08010 PF07992 Pyridine nucleotide-disulphide oxidoreductase M1S54_08010 PF01077 Nitrite and sulphite reductase 4Fe-4S domain M1S54_08010 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain M1S54_08010 PF13806 Rieske-like [2Fe-2S] domain M1S54_08010 PF18267 Rubredoxin NAD+ reductase C-terminal domain M1S54_08010 PF04324 BFD-like [2Fe-2S] binding domain M1S54_08015 PF01077 Nitrite and sulphite reductase 4Fe-4S domain M1S54_08015 PF07992 Pyridine nucleotide-disulphide oxidoreductase M1S54_08015 PF18267 Rubredoxin NAD+ reductase C-terminal domain M1S54_08015 PF04324 BFD-like [2Fe-2S] binding domain M1S54_08015 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain M1S54_08020 PF04324 BFD-like [2Fe-2S] binding domain M1S54_08020 PF04879 Molybdopterin oxidoreductase Fe4S4 domain M1S54_08020 PF00384 Molybdopterin oxidoreductase M1S54_08020 PF01568 Molydopterin dinucleotide binding domain M1S54_08025 PF12804 MobA-like NTP transferase domain M1S54_08030 PF00384 Molybdopterin oxidoreductase M1S54_08030 PF04879 Molybdopterin oxidoreductase Fe4S4 domain M1S54_08030 PF01568 Molydopterin dinucleotide binding domain M1S54_08035 PF06463 Molybdenum Cofactor Synthesis C M1S54_08035 PF04055 Radical SAM superfamily M1S54_08045 PF02391 MoaE protein M1S54_08050 PF01967 MoaC family M1S54_08050 PF00994 Probable molybdopterin binding domain M1S54_08055 PF00994 Probable molybdopterin binding domain M1S54_08055 PF03454 MoeA C-terminal region (domain IV) M1S54_08055 PF03453 MoeA N-terminal region (domain I and II) M1S54_08060 PF01638 HxlR-like helix-turn-helix M1S54_08065 PF00155 Aminotransferase class I and II M1S54_08065 PF00392 Bacterial regulatory proteins, gntR family M1S54_08070 PF00892 EamA-like transporter family M1S54_08090 PF02635 DsrE/DsrF-like family M1S54_08095 PF16363 GDP-mannose 4,6 dehydratase M1S54_08100 PF10415 Fumarase C C-terminus M1S54_08100 PF00206 Lyase M1S54_08120 PF01266 FAD dependent oxidoreductase M1S54_08130 PF02542 YgbB family M1S54_08140 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain M1S54_08140 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain M1S54_08160 PF00158 Sigma-54 interaction domain M1S54_08160 PF00072 Response regulator receiver domain M1S54_08160 PF02954 Bacterial regulatory protein, Fis family M1S54_08165 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M1S54_08165 PF00989 PAS fold M1S54_08165 PF00512 His Kinase A (phospho-acceptor) domain M1S54_08170 PF18693 TRAM domain M1S54_08170 PF04055 Radical SAM superfamily M1S54_08170 PF00919 Uncharacterized protein family UPF0004 M1S54_08175 PF00696 Amino acid kinase family M1S54_08180 PF01765 Ribosome recycling factor M1S54_08185 PF01255 Putative undecaprenyl diphosphate synthase M1S54_08195 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain M1S54_08195 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase M1S54_08195 PF13288 DXP reductoisomerase C-terminal domain M1S54_08205 PF01103 Surface antigen M1S54_08205 PF07244 Surface antigen variable number repeat M1S54_08215 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD M1S54_08215 PF00132 Bacterial transferase hexapeptide (six repeats) M1S54_08220 PF07977 FabA-like domain M1S54_08225 PF00132 Bacterial transferase hexapeptide (six repeats) M1S54_08225 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 M1S54_08240 PF02631 RecX family M1S54_08245 PF00154 recA bacterial DNA recombination protein M1S54_08250 PF01479 S4 domain M1S54_08255 PF13419 Haloacid dehalogenase-like hydrolase M1S54_08280 PF01037 Lrp/AsnC ligand binding domain M1S54_08285 PF00266 Aminotransferase class-V M1S54_08290 PF00324 Amino acid permease M1S54_08305 PF05922 Peptidase inhibitor I9 M1S54_08305 PF00082 Subtilase family M1S54_08310 PF01740 STAS domain M1S54_08310 PF00916 Sulfate permease family M1S54_08315 PF02586 SOS response associated peptidase (SRAP) M1S54_08320 PF07995 Glucose / Sorbosone dehydrogenase M1S54_08330 PF03707 Bacterial signalling protein N terminal repeat M1S54_08330 PF00990 Diguanylate cyclase, GGDEF domain M1S54_08330 PF00563 EAL domain M1S54_08350 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit M1S54_08350 PF02378 Phosphotransferase system, EIIC M1S54_08355 PF00294 pfkB family carbohydrate kinase M1S54_08360 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 M1S54_08360 PF00381 PTS HPr component phosphorylation site M1S54_08360 PF02896 PEP-utilising enzyme, TIM barrel domain M1S54_08360 PF00391 PEP-utilising enzyme, mobile domain M1S54_08360 PF05524 PEP-utilising enzyme, N-terminal M1S54_08385 PF05525 Branched-chain amino acid transport protein M1S54_08390 PF00557 Metallopeptidase family M24 M1S54_08395 PF03466 LysR substrate binding domain M1S54_08395 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M1S54_08405 PF00462 Glutaredoxin M1S54_08410 PF00202 Aminotransferase class-III M1S54_08415 PF00478 IMP dehydrogenase / GMP reductase domain M1S54_08415 PF00571 CBS domain M1S54_08440 PF02881 SRP54-type protein, helical bundle domain M1S54_08440 PF00448 SRP54-type protein, GTPase domain M1S54_08450 PF09829 Uncharacterized protein conserved in bacteria (DUF2057) M1S54_08465 PF08173 Membrane bound YbgT-like protein M1S54_08470 PF02322 Cytochrome bd terminal oxidase subunit II M1S54_08475 PF01654 Cytochrome bd terminal oxidase subunit I M1S54_08485 PF07290 Protein of unknown function (DUF1449) M1S54_08495 PF00294 pfkB family carbohydrate kinase M1S54_08500 PF07715 TonB-dependent Receptor Plug Domain M1S54_08500 PF00593 TonB dependent receptor M1S54_08505 PF08367 Peptidase M16C associated M1S54_08505 PF00675 Insulinase (Peptidase family M16) M1S54_08505 PF05193 Peptidase M16 inactive domain M1S54_08510 PF02253 Phospholipase A1 M1S54_08515 PF02386 Cation transport protein M1S54_08520 PF02080 TrkA-C domain M1S54_08520 PF02254 TrkA-N domain M1S54_08525 PF00585 C-terminal regulatory domain of Threonine dehydratase M1S54_08525 PF00291 Pyridoxal-phosphate dependent enzyme M1S54_08530 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) M1S54_08545 PF02774 Semialdehyde dehydrogenase, dimerisation domain M1S54_08545 PF01118 Semialdehyde dehydrogenase, NAD binding domain M1S54_08555 PF02617 ATP-dependent Clp protease adaptor protein ClpS M1S54_08560 PF17871 AAA lid domain M1S54_08560 PF02861 Clp amino terminal domain, pathogenicity island component M1S54_08560 PF10431 C-terminal, D2-small domain, of ClpB protein M1S54_08560 PF00004 ATPase family associated with various cellular activities (AAA) M1S54_08560 PF07724 AAA domain (Cdc48 subfamily) M1S54_08565 PF02694 Uncharacterised BCR, YnfA/UPF0060 family M1S54_08570 PF00793 DAHP synthetase I family M1S54_08585 PF00724 NADH:flavin oxidoreductase / NADH oxidase family M1S54_08585 PF07992 Pyridine nucleotide-disulphide oxidoreductase M1S54_08615 PF06418 CTP synthase N-terminus M1S54_08615 PF00117 Glutamine amidotransferase class-I M1S54_08620 PF00793 DAHP synthetase I family M1S54_08625 PF00113 Enolase, C-terminal TIM barrel domain M1S54_08625 PF03952 Enolase, N-terminal domain M1S54_08630 PF04239 Protein of unknown function (DUF421) M1S54_08635 PF04977 Septum formation initiator M1S54_08640 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase M1S54_08645 PF01144 Coenzyme A transferase M1S54_08650 PF01144 Coenzyme A transferase M1S54_08655 PF00108 Thiolase, N-terminal domain M1S54_08655 PF02803 Thiolase, C-terminal domain M1S54_08660 PF10397 Adenylosuccinate lyase C-terminus M1S54_08660 PF00206 Lyase M1S54_08665 PF00561 alpha/beta hydrolase fold M1S54_08670 PF07690 Major Facilitator Superfamily M1S54_08675 PF02627 Carboxymuconolactone decarboxylase family M1S54_08680 PF12391 Protocatechuate 3,4-dioxygenase beta subunit N terminal M1S54_08680 PF00775 Dioxygenase M1S54_08685 PF00775 Dioxygenase M1S54_08690 PF01487 Type I 3-dehydroquinase M1S54_08695 PF05048 Periplasmic copper-binding protein (NosD) M1S54_08700 PF04966 Carbohydrate-selective porin, OprB family M1S54_08705 PF01011 PQQ enzyme repeat M1S54_08705 PF13360 PQQ-like domain M1S54_08715 PF04143 Sulphur transport M1S54_08725 PF00753 Metallo-beta-lactamase superfamily M1S54_08730 PF09339 IclR helix-turn-helix domain M1S54_08730 PF01614 Bacterial transcriptional regulator M1S54_08735 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M1S54_08735 PF03466 LysR substrate binding domain M1S54_08755 PF00106 short chain dehydrogenase M1S54_08765 PF07690 Major Facilitator Superfamily M1S54_08775 PF01425 Amidase M1S54_08780 PF08028 Acyl-CoA dehydrogenase, C-terminal domain M1S54_08795 PF00848 Ring hydroxylating alpha subunit (catalytic domain) M1S54_08795 PF00355 Rieske [2Fe-2S] domain M1S54_08810 PF00111 2Fe-2S iron-sulfur cluster binding domain M1S54_08810 PF00175 Oxidoreductase NAD-binding domain M1S54_08815 PF01613 Flavin reductase like domain M1S54_08820 PF02311 AraC-like ligand binding domain M1S54_08820 PF12833 Helix-turn-helix domain M1S54_08825 PF02728 Copper amine oxidase, N3 domain M1S54_08825 PF02727 Copper amine oxidase, N2 domain M1S54_08825 PF07833 Copper amine oxidase N-terminal domain M1S54_08825 PF01179 Copper amine oxidase, enzyme domain M1S54_08835 PF00171 Aldehyde dehydrogenase family M1S54_08840 PF01804 Penicillin amidase M1S54_08845 PF12146 Serine aminopeptidase, S33 M1S54_08850 PF02803 Thiolase, C-terminal domain M1S54_08850 PF00108 Thiolase, N-terminal domain M1S54_08855 PF01144 Coenzyme A transferase M1S54_08860 PF01144 Coenzyme A transferase M1S54_08865 PF00775 Dioxygenase M1S54_08865 PF04444 Catechol dioxygenase N terminus M1S54_08870 PF02426 Muconolactone delta-isomerase M1S54_08875 PF13378 Enolase C-terminal domain-like M1S54_08875 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain M1S54_08880 PF03466 LysR substrate binding domain M1S54_08880 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M1S54_08890 PF07729 FCD domain M1S54_08890 PF00392 Bacterial regulatory proteins, gntR family M1S54_08895 PF00920 Dehydratase family M1S54_08900 PF07690 Major Facilitator Superfamily M1S54_08910 PF00171 Aldehyde dehydrogenase family M1S54_08930 PF00441 Acyl-CoA dehydrogenase, C-terminal domain M1S54_08930 PF02770 Acyl-CoA dehydrogenase, middle domain M1S54_08930 PF02771 Acyl-CoA dehydrogenase, N-terminal domain M1S54_08940 PF02954 Bacterial regulatory protein, Fis family M1S54_08940 PF06506 Propionate catabolism activator M1S54_08940 PF00158 Sigma-54 interaction domain M1S54_08945 PF00501 AMP-binding enzyme M1S54_08945 PF13193 AMP-binding enzyme C-terminal domain M1S54_08950 PF04341 Protein of unknown function, DUF485 M1S54_08955 PF00474 Sodium:solute symporter family M1S54_08960 PF00107 Zinc-binding dehydrogenase M1S54_08960 PF08240 Alcohol dehydrogenase GroES-like domain M1S54_08965 PF00171 Aldehyde dehydrogenase family M1S54_08975 PF00561 alpha/beta hydrolase fold M1S54_08980 PF00199 Catalase M1S54_08980 PF06628 Catalase-related immune-responsive M1S54_08995 PF07859 alpha/beta hydrolase fold M1S54_09000 PF01047 MarR family M1S54_09005 PF00724 NADH:flavin oxidoreductase / NADH oxidase family M1S54_09005 PF07992 Pyridine nucleotide-disulphide oxidoreductase M1S54_09010 PF00106 short chain dehydrogenase M1S54_09015 PF01872 RibD C-terminal domain M1S54_09020 PF00376 MerR family regulatory protein M1S54_09020 PF09278 MerR, DNA binding M1S54_09030 PF07992 Pyridine nucleotide-disulphide oxidoreductase M1S54_09040 PF12706 Beta-lactamase superfamily domain M1S54_09045 PF00440 Bacterial regulatory proteins, tetR family M1S54_09045 PF08359 YsiA-like protein, C-terminal region M1S54_09055 PF00857 Isochorismatase family M1S54_09060 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M1S54_09060 PF03466 LysR substrate binding domain M1S54_09065 PF07995 Glucose / Sorbosone dehydrogenase M1S54_09070 PF00999 Sodium/hydrogen exchanger family M1S54_09070 PF02254 TrkA-N domain M1S54_09080 PF01546 Peptidase family M20/M25/M40 M1S54_09080 PF07687 Peptidase dimerisation domain M1S54_09090 PF08479 POTRA domain, ShlB-type M1S54_09090 PF17287 POTRA domain M1S54_09090 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB M1S54_09095 PF13332 Hemagglutinin repeat M1S54_09095 PF13018 Extended Signal Peptide of Type V secretion system M1S54_09095 PF05860 haemagglutination activity domain M1S54_09095 PF04829 Pre-toxin domain with VENN motif M1S54_09110 PF07690 Major Facilitator Superfamily M1S54_09115 PF04909 Amidohydrolase M1S54_09125 PF07702 UTRA domain M1S54_09125 PF00392 Bacterial regulatory proteins, gntR family M1S54_09130 PF08450 SMP-30/Gluconolactonase/LRE-like region M1S54_09140 PF03466 LysR substrate binding domain M1S54_09140 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M1S54_09160 PF07690 Major Facilitator Superfamily M1S54_09165 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain M1S54_09165 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain M1S54_09165 PF01842 ACT domain M1S54_09170 PF03737 Aldolase/RraA M1S54_09200 PF00529 HlyD membrane-fusion protein of T1SS M1S54_09200 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion M1S54_09215 PF00171 Aldehyde dehydrogenase family M1S54_09220 PF00920 Dehydratase family M1S54_09230 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M1S54_09230 PF03466 LysR substrate binding domain M1S54_09235 PF01370 NAD dependent epimerase/dehydratase family M1S54_09240 PF07690 Major Facilitator Superfamily M1S54_09245 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase M1S54_09245 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase M1S54_09250 PF06719 AraC-type transcriptional regulator N-terminus M1S54_09250 PF12833 Helix-turn-helix domain M1S54_09265 PF00107 Zinc-binding dehydrogenase M1S54_09265 PF08240 Alcohol dehydrogenase GroES-like domain M1S54_09275 PF01032 FecCD transport family M1S54_09280 PF00005 ABC transporter M1S54_09300 PF14572 Phosphoribosyl synthetase-associated domain M1S54_09300 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase M1S54_09305 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family M1S54_09380 PF00196 Bacterial regulatory proteins, luxR family M1S54_09385 PF01425 Amidase M1S54_09390 PF13533 Biotin-lipoyl like M1S54_09395 PF07690 Major Facilitator Superfamily M1S54_09420 PF01975 Survival protein SurE M1S54_09430 PF13291 ACT domain M1S54_09430 PF04607 Region found in RelA / SpoT proteins M1S54_09430 PF02824 TGS domain M1S54_09480 PF12146 Serine aminopeptidase, S33 M1S54_09485 PF02311 AraC-like ligand binding domain M1S54_09485 PF12833 Helix-turn-helix domain M1S54_09495 PF16527 Two-component sensor protein CpxA, periplasmic domain M1S54_09495 PF00672 HAMP domain M1S54_09495 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M1S54_09495 PF00512 His Kinase A (phospho-acceptor) domain M1S54_09500 PF00486 Transcriptional regulatory protein, C terminal M1S54_09500 PF00072 Response regulator receiver domain M1S54_09505 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion M1S54_09505 PF00529 HlyD membrane-fusion protein of T1SS M1S54_09510 PF00873 AcrB/AcrD/AcrF family M1S54_09515 PF02321 Outer membrane efflux protein M1S54_09520 PF12146 Serine aminopeptidase, S33 M1S54_09525 PF00743 Flavin-binding monooxygenase-like M1S54_09530 PF01593 Flavin containing amine oxidoreductase M1S54_09545 PF01266 FAD dependent oxidoreductase M1S54_09565 PF16970 Type-1 fimbrial protein, A M1S54_09575 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain M1S54_09575 PF02753 Pili assembly chaperone PapD, C-terminal domain M1S54_09580 PF00577 Outer membrane usher protein M1S54_09580 PF13953 PapC C-terminal domain M1S54_09580 PF13954 PapC N-terminal domain M1S54_09585 PF00419 Fimbrial protein M1S54_09595 PF08240 Alcohol dehydrogenase GroES-like domain M1S54_09595 PF00107 Zinc-binding dehydrogenase M1S54_09605 PF00199 Catalase M1S54_09620 PF13091 PLD-like domain M1S54_09640 PF01244 Membrane dipeptidase (Peptidase family M19) M1S54_09645 PF04055 Radical SAM superfamily M1S54_09645 PF13186 Iron-sulfur cluster-binding domain M1S54_09650 PF05402 Coenzyme PQQ synthesis protein D (PqqD) M1S54_09655 PF03070 TENA/THI-4/PQQC family M1S54_09660 PF12706 Beta-lactamase superfamily domain M1S54_09665 PF08042 PqqA family M1S54_09670 PF13090 Polyphosphate kinase C-terminal domain 2 M1S54_09670 PF13089 Polyphosphate kinase N-terminal domain M1S54_09670 PF02503 Polyphosphate kinase middle domain M1S54_09670 PF17941 Polyphosphate kinase C-terminal domain 1 M1S54_09675 PF00149 Calcineurin-like phosphoesterase M1S54_09685 PF00857 Isochorismatase family M1S54_09685 PF00550 Phosphopantetheine attachment site M1S54_09690 PF00106 short chain dehydrogenase M1S54_09695 PF03459 TOBE domain M1S54_09695 PF00005 ABC transporter M1S54_09700 PF00528 Binding-protein-dependent transport system inner membrane component M1S54_09710 PF03459 TOBE domain M1S54_09710 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M1S54_09715 PF00848 Ring hydroxylating alpha subunit (catalytic domain) M1S54_09715 PF00355 Rieske [2Fe-2S] domain M1S54_09720 PF00866 Ring hydroxylating beta subunit M1S54_09725 PF00175 Oxidoreductase NAD-binding domain M1S54_09725 PF00111 2Fe-2S iron-sulfur cluster binding domain M1S54_09725 PF00970 Oxidoreductase FAD-binding domain M1S54_09730 PF14525 AraC-binding-like domain M1S54_09730 PF12833 Helix-turn-helix domain M1S54_09740 PF01613 Flavin reductase like domain M1S54_09755 PF01738 Dienelactone hydrolase family M1S54_09760 PF07690 Major Facilitator Superfamily M1S54_09765 PF12833 Helix-turn-helix domain M1S54_09765 PF06719 AraC-type transcriptional regulator N-terminus M1S54_09790 PF03466 LysR substrate binding domain M1S54_09790 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M1S54_09795 PF01144 Coenzyme A transferase M1S54_09800 PF01144 Coenzyme A transferase M1S54_09805 PF02667 Short chain fatty acid transporter M1S54_09810 PF02803 Thiolase, C-terminal domain M1S54_09810 PF00108 Thiolase, N-terminal domain M1S54_09815 PF03466 LysR substrate binding domain M1S54_09815 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M1S54_09820 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M1S54_09820 PF03466 LysR substrate binding domain M1S54_09835 PF10415 Fumarase C C-terminus M1S54_09835 PF00206 Lyase M1S54_09840 PF07715 TonB-dependent Receptor Plug Domain M1S54_09840 PF00593 TonB dependent receptor M1S54_09845 PF00083 Sugar (and other) transporter M1S54_09860 PF00005 ABC transporter M1S54_09865 PF00528 Binding-protein-dependent transport system inner membrane component M1S54_09870 PF04069 Substrate binding domain of ABC-type glycine betaine transport system M1S54_09885 PF00392 Bacterial regulatory proteins, gntR family M1S54_09885 PF07702 UTRA domain M1S54_09895 PF02525 Flavodoxin-like fold M1S54_09900 PF01638 HxlR-like helix-turn-helix M1S54_09905 PF06445 GyrI-like small molecule binding domain M1S54_09905 PF12833 Helix-turn-helix domain M1S54_09920 PF01925 Sulfite exporter TauE/SafE M1S54_09935 PF04273 Putative phosphatase (DUF442) M1S54_09935 PF00753 Metallo-beta-lactamase superfamily M1S54_09940 PF02954 Bacterial regulatory protein, Fis family M1S54_09940 PF00072 Response regulator receiver domain M1S54_09940 PF00158 Sigma-54 interaction domain M1S54_09945 PF01062 Bestrophin, RFP-TM, chloride channel M1S54_09950 PF08240 Alcohol dehydrogenase GroES-like domain M1S54_09950 PF00107 Zinc-binding dehydrogenase M1S54_09955 PF00106 short chain dehydrogenase M1S54_09960 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain M1S54_09960 PF07992 Pyridine nucleotide-disulphide oxidoreductase M1S54_09965 PF02817 e3 binding domain M1S54_09965 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) M1S54_09965 PF00364 Biotin-requiring enzyme M1S54_09970 PF02780 Transketolase, C-terminal domain M1S54_09970 PF02779 Transketolase, pyrimidine binding domain M1S54_09975 PF00676 Dehydrogenase E1 component M1S54_09980 PF04055 Radical SAM superfamily M1S54_09995 PF08448 PAS fold M1S54_09995 PF00990 Diguanylate cyclase, GGDEF domain M1S54_10000 PF01264 Chorismate synthase M1S54_10005 PF05175 Methyltransferase small domain M1S54_10010 PF00291 Pyridoxal-phosphate dependent enzyme M1S54_10020 PF01434 Peptidase family M41 M1S54_10020 PF17862 AAA+ lid domain M1S54_10020 PF00004 ATPase family associated with various cellular activities (AAA) M1S54_10030 PF05166 YcgL domain M1S54_10050 PF01612 3'-5' exonuclease M1S54_10050 PF00570 HRDC domain M1S54_10055 PF02132 RecR protein M1S54_10055 PF13662 Toprim domain M1S54_10060 PF02575 YbaB/EbfC DNA-binding family M1S54_10070 PF01053 Cys/Met metabolism PLP-dependent enzyme M1S54_10075 PF00561 alpha/beta hydrolase fold M1S54_10080 PF08241 Methyltransferase domain M1S54_10110 PF01230 HIT domain M1S54_10145 PF00005 ABC transporter M1S54_10150 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion M1S54_10160 PF02684 Lipid-A-disaccharide synthetase M1S54_10165 PF07715 TonB-dependent Receptor Plug Domain M1S54_10165 PF00593 TonB dependent receptor M1S54_10185 PF01925 Sulfite exporter TauE/SafE M1S54_10190 PF00793 DAHP synthetase I family M1S54_10195 PF02654 Cobalamin-5-phosphate synthase M1S54_10210 PF02277 Phosphoribosyltransferase M1S54_10215 PF02283 Cobinamide kinase / cobinamide phosphate guanyltransferase M1S54_10225 PF13419 Haloacid dehalogenase-like hydrolase M1S54_10250 PF07715 TonB-dependent Receptor Plug Domain M1S54_10250 PF00593 TonB dependent receptor M1S54_10265 PF04183 IucA / IucC family M1S54_10265 PF06276 Ferric iron reductase FhuF-like transporter M1S54_10270 PF06276 Ferric iron reductase FhuF-like transporter M1S54_10270 PF04183 IucA / IucC family M1S54_10275 PF07690 Major Facilitator Superfamily M1S54_10280 PF13434 L-lysine 6-monooxygenase (NADPH-requiring) M1S54_10285 PF06276 Ferric iron reductase FhuF-like transporter M1S54_10285 PF04183 IucA / IucC family M1S54_10290 PF04073 Aminoacyl-tRNA editing domain M1S54_10305 PF03109 ABC1 family M1S54_10310 PF00441 Acyl-CoA dehydrogenase, C-terminal domain M1S54_10310 PF02770 Acyl-CoA dehydrogenase, middle domain M1S54_10310 PF02771 Acyl-CoA dehydrogenase, N-terminal domain M1S54_10315 PF02770 Acyl-CoA dehydrogenase, middle domain M1S54_10315 PF00441 Acyl-CoA dehydrogenase, C-terminal domain M1S54_10315 PF02771 Acyl-CoA dehydrogenase, N-terminal domain M1S54_10320 PF00487 Fatty acid desaturase M1S54_10325 PF12852 Cupin M1S54_10325 PF12833 Helix-turn-helix domain M1S54_10330 PF00639 PPIC-type PPIASE domain M1S54_10330 PF09312 SurA N-terminal domain M1S54_10335 PF00216 Bacterial DNA-binding protein M1S54_10350 PF02082 Transcriptional regulator M1S54_10355 PF00266 Aminotransferase class-V M1S54_10360 PF01592 NifU-like N terminal domain M1S54_10365 PF01521 Iron-sulphur cluster biosynthesis M1S54_10370 PF07743 HSCB C-terminal oligomerisation domain M1S54_10370 PF00226 DnaJ domain M1S54_10375 PF00012 Hsp70 protein M1S54_10380 PF00111 2Fe-2S iron-sulfur cluster binding domain M1S54_10385 PF00211 Adenylate and Guanylate cyclase catalytic domain M1S54_10395 PF02559 CarD-like/TRCF domain M1S54_10395 PF00270 DEAD/DEAH box helicase M1S54_10395 PF00271 Helicase conserved C-terminal domain M1S54_10395 PF17757 UvrB interaction domain M1S54_10395 PF03461 TRCF domain M1S54_10415 PF03737 Aldolase/RraA M1S54_10420 PF13460 NAD(P)H-binding M1S54_10425 PF01649 Ribosomal protein S20 M1S54_10435 PF00459 Inositol monophosphatase family M1S54_10450 PF00005 ABC transporter M1S54_10450 PF08352 Oligopeptide/dipeptide transporter, C-terminal region M1S54_10455 PF00528 Binding-protein-dependent transport system inner membrane component M1S54_10460 PF00528 Binding-protein-dependent transport system inner membrane component M1S54_10465 PF01432 Peptidase family M3 M1S54_10505 PF01618 MotA/TolQ/ExbB proton channel family M1S54_10510 PF02472 Biopolymer transport protein ExbD/TolR M1S54_10515 PF02472 Biopolymer transport protein ExbD/TolR M1S54_10525 PF01274 Malate synthase M1S54_10530 PF03969 AFG1-like ATPase M1S54_10540 PF00743 Flavin-binding monooxygenase-like M1S54_10550 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family M1S54_10560 PF00216 Bacterial DNA-binding protein M1S54_10565 PF00575 S1 RNA binding domain M1S54_10570 PF02224 Cytidylate kinase M1S54_10580 PF14437 MafB19-like deaminase M1S54_10590 PF03167 Uracil DNA glycosylase superfamily M1S54_10600 PF03934 Type II secretion system (T2SS), protein K M1S54_10605 PF11612 Type II secretion system (T2SS), protein J M1S54_10605 PF07963 Prokaryotic N-terminal methylation motif M1S54_10610 PF02501 Type II secretion system (T2SS), protein I M1S54_10610 PF07963 Prokaryotic N-terminal methylation motif M1S54_10625 PF01026 TatD related DNase M1S54_10635 PF09115 DNA polymerase III, delta subunit, C terminal M1S54_10640 PF02348 Cytidylyltransferase M1S54_10645 PF02606 Tetraacyldisaccharide-1-P 4'-kinase M1S54_10650 PF00664 ABC transporter transmembrane region M1S54_10650 PF00005 ABC transporter M1S54_10660 PF01618 MotA/TolQ/ExbB proton channel family M1S54_10665 PF02195 ParB-like nuclease domain M1S54_10665 PF17762 HTH domain found in ParB protein M1S54_10670 PF13614 AAA domain M1S54_10675 PF02527 rRNA small subunit methyltransferase G M1S54_10680 PF00483 Nucleotidyl transferase M1S54_10685 PF01636 Phosphotransferase enzyme family M1S54_10690 PF04453 LPS transport system D M1S54_10690 PF03968 OstA-like protein M1S54_10695 PF00639 PPIC-type PPIASE domain M1S54_10695 PF09312 SurA N-terminal domain M1S54_10700 PF01116 Fructose-bisphosphate aldolase class-II M1S54_10710 PF00162 Phosphoglycerate kinase M1S54_10720 PF02545 Maf-like protein M1S54_10725 PF08007 Cupin superfamily protein M1S54_10740 PF00375 Sodium:dicarboxylate symporter family M1S54_10745 PF06912 Protein of unknown function (DUF1275) M1S54_10750 PF09831 Uncharacterized protein conserved in bacteria (DUF2058) M1S54_10755 PF00005 ABC transporter M1S54_10755 PF00664 ABC transporter transmembrane region M1S54_10765 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term M1S54_10765 PF12833 Helix-turn-helix domain M1S54_10770 PF01597 Glycine cleavage H-protein M1S54_10775 PF02146 Sir2 family M1S54_10780 PF00474 Sodium:solute symporter family M1S54_10785 PF01037 Lrp/AsnC ligand binding domain M1S54_10790 PF14850 DNA-binding domain of Proline dehydrogenase M1S54_10790 PF01619 Proline dehydrogenase M1S54_10790 PF00171 Aldehyde dehydrogenase family M1S54_10790 PF18327 Proline utilization A proline dehydrogenase N-terminal domain M1S54_10795 PF04229 GrpB protein M1S54_10800 PF05958 tRNA (Uracil-5-)-methyltransferase M1S54_10810 PF09992 Phosphodiester glycosidase M1S54_10820 PF04264 YceI-like domain M1S54_10835 PF02773 S-adenosylmethionine synthetase, C-terminal domain M1S54_10835 PF02772 S-adenosylmethionine synthetase, central domain M1S54_10835 PF00438 S-adenosylmethionine synthetase, N-terminal domain M1S54_10855 PF00905 Penicillin binding protein transpeptidase domain M1S54_10870 PF02075 Crossover junction endodeoxyribonuclease RuvC M1S54_10875 PF03853 YjeF-related protein N-terminus M1S54_10875 PF01256 Carbohydrate kinase M1S54_10880 PF08331 Domain of unknown function (DUF1730) M1S54_10885 PF06968 Biotin and Thiamin Synthesis associated domain M1S54_10885 PF04055 Radical SAM superfamily M1S54_10900 PF16970 Type-1 fimbrial protein, A M1S54_10905 PF02753 Pili assembly chaperone PapD, C-terminal domain M1S54_10905 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain M1S54_10910 PF00577 Outer membrane usher protein M1S54_10910 PF13953 PapC C-terminal domain M1S54_10910 PF13954 PapC N-terminal domain M1S54_10930 PF00892 EamA-like transporter family M1S54_10940 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin M1S54_10950 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M1S54_10950 PF03466 LysR substrate binding domain M1S54_10970 PF00440 Bacterial regulatory proteins, tetR family M1S54_10980 PF01709 Transcriptional regulator M1S54_10985 PF01037 Lrp/AsnC ligand binding domain M1S54_11000 PF00005 ABC transporter M1S54_11005 PF00528 Binding-protein-dependent transport system inner membrane component M1S54_11010 PF00528 Binding-protein-dependent transport system inner membrane component M1S54_11025 PF08028 Acyl-CoA dehydrogenase, C-terminal domain M1S54_11025 PF02771 Acyl-CoA dehydrogenase, N-terminal domain M1S54_11035 PF00296 Luciferase-like monooxygenase M1S54_11040 PF03180 NLPA lipoprotein M1S54_11060 PF00005 ABC transporter M1S54_11060 PF09383 NIL domain M1S54_11065 PF00528 Binding-protein-dependent transport system inner membrane component M1S54_11070 PF01926 50S ribosome-binding GTPase M1S54_11070 PF06071 Protein of unknown function (DUF933) M1S54_11095 PF03591 AzlC protein M1S54_11100 PF05437 Branched-chain amino acid transport protein (AzlD) M1S54_11110 PF02222 ATP-grasp domain M1S54_11115 PF01966 HD domain M1S54_11115 PF08335 GlnD PII-uridylyltransferase M1S54_11115 PF01909 Nucleotidyltransferase domain M1S54_11120 PF00155 Aminotransferase class I and II M1S54_11130 PF12833 Helix-turn-helix domain M1S54_11130 PF12852 Cupin M1S54_11135 PF00255 Glutathione peroxidase M1S54_11140 PF01641 SelR domain M1S54_11145 PF00155 Aminotransferase class I and II M1S54_11150 PF00375 Sodium:dicarboxylate symporter family M1S54_11155 PF00710 Asparaginase, N-terminal M1S54_11155 PF17763 Glutaminase/Asparaginase C-terminal domain M1S54_11160 PF07733 Bacterial DNA polymerase III alpha NTPase domain M1S54_11160 PF17657 Bacterial DNA polymerase III alpha subunit finger domain M1S54_11160 PF14579 Helix-hairpin-helix motif M1S54_11160 PF01336 OB-fold nucleic acid binding domain M1S54_11160 PF02811 PHP domain M1S54_11165 PF00588 SpoU rRNA Methylase family M1S54_11170 PF00132 Bacterial transferase hexapeptide (six repeats) M1S54_11185 PF07992 Pyridine nucleotide-disulphide oxidoreductase M1S54_11185 PF13192 Thioredoxin domain M1S54_11200 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M1S54_11200 PF03466 LysR substrate binding domain M1S54_11205 PF01758 Sodium Bile acid symporter family M1S54_11210 PF01022 Bacterial regulatory protein, arsR family M1S54_11215 PF03960 ArsC family M1S54_11225 PF13382 Adenine deaminase C-terminal domain M1S54_11225 PF01979 Amidohydrolase family M1S54_11255 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin M1S54_11260 PF01177 Asp/Glu/Hydantoin racemase M1S54_11265 PF02668 Taurine catabolism dioxygenase TauD, TfdA family M1S54_11270 PF00528 Binding-protein-dependent transport system inner membrane component M1S54_11275 PF00005 ABC transporter M1S54_11280 PF04069 Substrate binding domain of ABC-type glycine betaine transport system M1S54_11290 PF00083 Sugar (and other) transporter M1S54_11295 PF00296 Luciferase-like monooxygenase M1S54_11300 PF08028 Acyl-CoA dehydrogenase, C-terminal domain M1S54_11300 PF02770 Acyl-CoA dehydrogenase, middle domain M1S54_11300 PF02771 Acyl-CoA dehydrogenase, N-terminal domain M1S54_11310 PF01654 Cytochrome bd terminal oxidase subunit I M1S54_11315 PF02322 Cytochrome bd terminal oxidase subunit II M1S54_11325 PF00392 Bacterial regulatory proteins, gntR family M1S54_11325 PF00155 Aminotransferase class I and II M1S54_11330 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M1S54_11330 PF03466 LysR substrate binding domain M1S54_11345 PF00698 Acyl transferase domain M1S54_11350 PF10620 Phosphoribosyl-dephospho-CoA transferase MdcG M1S54_11360 PF01039 Carboxyl transferase domain M1S54_11365 PF06857 Malonate decarboxylase delta subunit (MdcD) M1S54_11370 PF01874 ATP:dephospho-CoA triphosphoribosyl transferase M1S54_11375 PF16957 Malonate decarboxylase, alpha subunit, transporter M1S54_11380 PF07690 Major Facilitator Superfamily M1S54_11395 PF00392 Bacterial regulatory proteins, gntR family M1S54_11395 PF00155 Aminotransferase class I and II M1S54_11400 PF04172 LrgB-like family M1S54_11405 PF03788 LrgA family M1S54_11410 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M1S54_11410 PF03466 LysR substrate binding domain M1S54_11415 PF14834 Glutathione S-transferase, C-terminal domain M1S54_11415 PF02798 Glutathione S-transferase, N-terminal domain M1S54_11420 PF02798 Glutathione S-transferase, N-terminal domain M1S54_11425 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M1S54_11425 PF03466 LysR substrate binding domain M1S54_11435 PF00581 Rhodanese-like domain M1S54_11440 PF00132 Bacterial transferase hexapeptide (six repeats) M1S54_11450 PF00266 Aminotransferase class-V M1S54_11460 PF01810 LysE type translocator M1S54_11465 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M1S54_11465 PF03466 LysR substrate binding domain M1S54_11475 PF00497 Bacterial extracellular solute-binding proteins, family 3 M1S54_11480 PF00497 Bacterial extracellular solute-binding proteins, family 3 M1S54_11485 PF00005 ABC transporter M1S54_11490 PF00528 Binding-protein-dependent transport system inner membrane component M1S54_11495 PF00528 Binding-protein-dependent transport system inner membrane component M1S54_11510 PF00072 Response regulator receiver domain M1S54_11515 PF00072 Response regulator receiver domain M1S54_11515 PF09308 LuxQ, periplasmic M1S54_11515 PF00512 His Kinase A (phospho-acceptor) domain M1S54_11515 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M1S54_11525 PF13404 AsnC-type helix-turn-helix domain M1S54_11525 PF01037 Lrp/AsnC ligand binding domain M1S54_11535 PF00717 Peptidase S24-like M1S54_11560 PF06628 Catalase-related immune-responsive M1S54_11560 PF00199 Catalase M1S54_11560 PF18011 C-terminal domain found in long catalases M1S54_11570 PF02464 Competence-damaged protein M1S54_11570 PF18146 Damage-inducible protein CinA KH domain M1S54_11570 PF00994 Probable molybdopterin binding domain M1S54_11605 PF03466 LysR substrate binding domain M1S54_11605 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M1S54_11625 PF00501 AMP-binding enzyme M1S54_11625 PF13193 AMP-binding enzyme C-terminal domain M1S54_11630 PF00440 Bacterial regulatory proteins, tetR family M1S54_11635 PF02771 Acyl-CoA dehydrogenase, N-terminal domain M1S54_11635 PF00441 Acyl-CoA dehydrogenase, C-terminal domain M1S54_11635 PF02770 Acyl-CoA dehydrogenase, middle domain M1S54_11640 PF01039 Carboxyl transferase domain M1S54_11645 PF00378 Enoyl-CoA hydratase/isomerase M1S54_11650 PF02785 Biotin carboxylase C-terminal domain M1S54_11650 PF18140 Propionyl-coenzyme A carboxylase BT domain M1S54_11650 PF00289 Biotin carboxylase, N-terminal domain M1S54_11650 PF00364 Biotin-requiring enzyme M1S54_11650 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain M1S54_11655 PF00682 HMGL-like M1S54_11660 PF03466 LysR substrate binding domain M1S54_11660 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M1S54_11675 PF02771 Acyl-CoA dehydrogenase, N-terminal domain M1S54_11675 PF02770 Acyl-CoA dehydrogenase, middle domain M1S54_11675 PF12806 Acetyl-CoA dehydrogenase C-terminal like M1S54_11675 PF00441 Acyl-CoA dehydrogenase, C-terminal domain M1S54_11685 PF07690 Major Facilitator Superfamily M1S54_11695 PF01144 Coenzyme A transferase M1S54_11700 PF01144 Coenzyme A transferase M1S54_11705 PF07690 Major Facilitator Superfamily M1S54_11710 PF00441 Acyl-CoA dehydrogenase, C-terminal domain M1S54_11710 PF02770 Acyl-CoA dehydrogenase, middle domain M1S54_11710 PF02771 Acyl-CoA dehydrogenase, N-terminal domain M1S54_11715 PF00378 Enoyl-CoA hydratase/isomerase M1S54_11725 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain M1S54_11725 PF18321 3-hydroxybutyryl-CoA dehydrogenase reduced Rossmann-fold domain M1S54_11725 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain M1S54_11730 PF00108 Thiolase, N-terminal domain M1S54_11730 PF02803 Thiolase, C-terminal domain M1S54_11735 PF09339 IclR helix-turn-helix domain M1S54_11740 PF07690 Major Facilitator Superfamily M1S54_11745 PF03060 Nitronate monooxygenase M1S54_11750 PF00378 Enoyl-CoA hydratase/isomerase M1S54_11755 PF09339 IclR helix-turn-helix domain M1S54_11760 PF02515 CoA-transferase family III M1S54_11765 PF02770 Acyl-CoA dehydrogenase, middle domain M1S54_11765 PF00441 Acyl-CoA dehydrogenase, C-terminal domain M1S54_11765 PF02771 Acyl-CoA dehydrogenase, N-terminal domain M1S54_11770 PF07690 Major Facilitator Superfamily M1S54_11775 PF13419 Haloacid dehalogenase-like hydrolase M1S54_11780 PF00266 Aminotransferase class-V M1S54_11785 PF01266 FAD dependent oxidoreductase M1S54_11790 PF00528 Binding-protein-dependent transport system inner membrane component M1S54_11795 PF00005 ABC transporter M1S54_11795 PF08402 TOBE domain M1S54_11805 PF00392 Bacterial regulatory proteins, gntR family M1S54_11805 PF07702 UTRA domain M1S54_11810 PF01494 FAD binding domain M1S54_11815 PF09339 IclR helix-turn-helix domain M1S54_11815 PF01614 Bacterial transcriptional regulator M1S54_11820 PF02525 Flavodoxin-like fold M1S54_11825 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M1S54_11825 PF03466 LysR substrate binding domain M1S54_11830 PF02627 Carboxymuconolactone decarboxylase family M1S54_11835 PF00171 Aldehyde dehydrogenase family M1S54_11845 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin M1S54_11855 PF00171 Aldehyde dehydrogenase family M1S54_11860 PF00296 Luciferase-like monooxygenase M1S54_11865 PF01613 Flavin reductase like domain M1S54_11870 PF12697 Alpha/beta hydrolase family M1S54_11890 PF01292 Prokaryotic cytochrome b561 M1S54_11895 PF00199 Catalase M1S54_11930 PF03061 Thioesterase superfamily M1S54_11935 PF00132 Bacterial transferase hexapeptide (six repeats) M1S54_11940 PF08223 PaaX-like protein C-terminal domain M1S54_11940 PF07848 PaaX-like protein M1S54_11945 PF00501 AMP-binding enzyme M1S54_11945 PF14535 AMP-binding enzyme C-terminal domain M1S54_11950 PF02803 Thiolase, C-terminal domain M1S54_11950 PF00108 Thiolase, N-terminal domain M1S54_11955 PF18321 3-hydroxybutyryl-CoA dehydrogenase reduced Rossmann-fold domain M1S54_11955 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain M1S54_11955 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain M1S54_11960 PF00378 Enoyl-CoA hydratase/isomerase M1S54_11965 PF00378 Enoyl-CoA hydratase/isomerase M1S54_11970 PF00970 Oxidoreductase FAD-binding domain M1S54_11970 PF00111 2Fe-2S iron-sulfur cluster binding domain M1S54_11970 PF00175 Oxidoreductase NAD-binding domain M1S54_11975 PF01883 Iron-sulfur cluster assembly protein M1S54_11980 PF05138 Phenylacetic acid catabolic protein M1S54_11985 PF06243 Phenylacetic acid degradation B M1S54_11990 PF05138 Phenylacetic acid catabolic protein M1S54_11995 PF00171 Aldehyde dehydrogenase family M1S54_11995 PF01575 MaoC like domain M1S54_12000 PF03313 Serine dehydratase alpha chain M1S54_12000 PF03315 Serine dehydratase beta chain M1S54_12005 PF13520 Amino acid permease M1S54_12010 PF00171 Aldehyde dehydrogenase family M1S54_12015 PF00083 Sugar (and other) transporter M1S54_12025 PF04324 BFD-like [2Fe-2S] binding domain M1S54_12025 PF07992 Pyridine nucleotide-disulphide oxidoreductase M1S54_12035 PF01266 FAD dependent oxidoreductase M1S54_12040 PF05544 Proline racemase M1S54_12045 PF00392 Bacterial regulatory proteins, gntR family M1S54_12055 PF00701 Dihydrodipicolinate synthetase family M1S54_12065 PF00376 MerR family regulatory protein M1S54_12065 PF09278 MerR, DNA binding M1S54_12080 PF02677 Epoxyqueuosine reductase QueH M1S54_12095 PF07690 Major Facilitator Superfamily M1S54_12100 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region M1S54_12110 PF03466 LysR substrate binding domain M1S54_12110 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M1S54_12130 PF05936 Bacterial Type VI secretion, VC_A0110, EvfL, ImpJ, VasE M1S54_12135 PF06812 ImpA, N-terminal, type VI secretion system M1S54_12180 PF05947 Type VI secretion system, TssF M1S54_12195 PF05943 Type VI secretion protein, EvpB/VC_A0108, tail sheath M1S54_12220 PF00005 ABC transporter M1S54_12225 PF00497 Bacterial extracellular solute-binding proteins, family 3 M1S54_12230 PF01425 Amidase M1S54_12235 PF08753 NikR C terminal nickel binding domain M1S54_12235 PF01402 Ribbon-helix-helix protein, copG family M1S54_12255 PF02525 Flavodoxin-like fold M1S54_12260 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain M1S54_12260 PF00289 Biotin carboxylase, N-terminal domain M1S54_12260 PF02785 Biotin carboxylase C-terminal domain M1S54_12275 PF13823 Alcohol dehydrogenase GroES-associated M1S54_12275 PF00107 Zinc-binding dehydrogenase M1S54_12275 PF08240 Alcohol dehydrogenase GroES-like domain M1S54_12285 PF00440 Bacterial regulatory proteins, tetR family M1S54_12305 PF00654 Voltage gated chloride channel M1S54_12310 PF00289 Biotin carboxylase, N-terminal domain M1S54_12310 PF00364 Biotin-requiring enzyme M1S54_12310 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain M1S54_12310 PF02785 Biotin carboxylase C-terminal domain M1S54_12320 PF07286 Protein of unknown function (DUF1445) M1S54_12325 PF03746 LamB/YcsF family M1S54_12330 PF01566 Natural resistance-associated macrophage protein M1S54_12335 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M1S54_12335 PF03466 LysR substrate binding domain M1S54_12350 PF05593 RHS Repeat M1S54_12350 PF03527 RHS protein M1S54_12355 PF13296 Putative type VI secretion system Rhs element Vgr M1S54_12355 PF10106 Uncharacterized protein conserved in bacteria (DUF2345) M1S54_12355 PF04717 Type VI secretion system, phage-baseplate injector M1S54_12365 PF13419 Haloacid dehalogenase-like hydrolase M1S54_12385 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain M1S54_12385 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain M1S54_12405 PF07690 Major Facilitator Superfamily M1S54_12420 PF03279 Bacterial lipid A biosynthesis acyltransferase M1S54_12425 PF00563 EAL domain M1S54_12425 PF03707 Bacterial signalling protein N terminal repeat M1S54_12425 PF00990 Diguanylate cyclase, GGDEF domain M1S54_12435 PF00892 EamA-like transporter family M1S54_12440 PF01037 Lrp/AsnC ligand binding domain M1S54_12445 PF05192 MutS domain III M1S54_12445 PF05188 MutS domain II M1S54_12445 PF01624 MutS domain I M1S54_12445 PF05190 MutS family domain IV M1S54_12445 PF00488 MutS domain V M1S54_12455 PF00037 4Fe-4S binding domain M1S54_12455 PF11953 Domain of unknown function (DUF3470) M1S54_12465 PF01596 O-methyltransferase M1S54_12475 PF00132 Bacterial transferase hexapeptide (six repeats) M1S54_12480 PF01205 Uncharacterized protein family UPF0029 M1S54_12490 PF00664 ABC transporter transmembrane region M1S54_12490 PF00005 ABC transporter M1S54_12490 PF03412 Peptidase C39 family M1S54_12495 PF02321 Outer membrane efflux protein M1S54_12500 PF00005 ABC transporter M1S54_12500 PF12399 Branched-chain amino acid ATP-binding cassette transporter M1S54_12505 PF03968 OstA-like protein M1S54_12520 PF00571 CBS domain M1S54_12520 PF01380 SIS domain M1S54_12525 PF09190 DALR domain M1S54_12525 PF01406 tRNA synthetases class I (C) catalytic domain M1S54_12560 PF01638 HxlR-like helix-turn-helix M1S54_12565 PF07690 Major Facilitator Superfamily M1S54_12590 PF14748 Pyrroline-5-carboxylate reductase dimerisation M1S54_12590 PF03807 NADP oxidoreductase coenzyme F420-dependent M1S54_12600 PF00313 'Cold-shock' DNA-binding domain M1S54_12605 PF01810 LysE type translocator M1S54_12640 PF02601 Exonuclease VII, large subunit M1S54_12640 PF13742 OB-fold nucleic acid binding domain M1S54_12675 PF09278 MerR, DNA binding M1S54_12675 PF00376 MerR family regulatory protein M1S54_12680 PF00403 Heavy-metal-associated domain M1S54_12685 PF00403 Heavy-metal-associated domain M1S54_12690 PF03466 LysR substrate binding domain M1S54_12690 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M1S54_12700 PF00848 Ring hydroxylating alpha subunit (catalytic domain) M1S54_12700 PF00355 Rieske [2Fe-2S] domain M1S54_12705 PF00866 Ring hydroxylating beta subunit M1S54_12710 PF00970 Oxidoreductase FAD-binding domain M1S54_12710 PF00111 2Fe-2S iron-sulfur cluster binding domain M1S54_12710 PF00175 Oxidoreductase NAD-binding domain M1S54_12715 PF00106 short chain dehydrogenase M1S54_12720 PF03594 Benzoate membrane transport protein M1S54_12725 PF07690 Major Facilitator Superfamily M1S54_12735 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal M1S54_12735 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III M1S54_12740 PF00270 DEAD/DEAH box helicase M1S54_12740 PF11898 Domain of unknown function (DUF3418) M1S54_12740 PF04408 Helicase associated domain (HA2) M1S54_12740 PF00271 Helicase conserved C-terminal domain M1S54_12740 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold M1S54_12745 PF10417 C-terminal domain of 1-Cys peroxiredoxin M1S54_12745 PF00578 AhpC/TSA family M1S54_12765 PF13192 Thioredoxin domain M1S54_12765 PF07992 Pyridine nucleotide-disulphide oxidoreductase M1S54_12775 PF00043 Glutathione S-transferase, C-terminal domain M1S54_12775 PF02798 Glutathione S-transferase, N-terminal domain M1S54_12785 PF02390 Putative methyltransferase M1S54_12790 PF13417 Glutathione S-transferase, N-terminal domain M1S54_12790 PF00043 Glutathione S-transferase, C-terminal domain M1S54_12800 PF00691 OmpA family M1S54_12800 PF13488 Glycine zipper M1S54_12805 PF01979 Amidohydrolase family M1S54_12810 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain M1S54_12810 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain M1S54_12820 PF10672 S-adenosylmethionine-dependent methyltransferase M1S54_12820 PF02926 THUMP domain M1S54_12820 PF01170 Putative RNA methylase family UPF0020 M1S54_12835 PF00004 ATPase family associated with various cellular activities (AAA) M1S54_12835 PF07724 AAA domain (Cdc48 subfamily) M1S54_12835 PF17871 AAA lid domain M1S54_12835 PF02861 Clp amino terminal domain, pathogenicity island component M1S54_12835 PF10431 C-terminal, D2-small domain, of ClpB protein M1S54_12850 PF02566 OsmC-like protein M1S54_12860 PF13545 Crp-like helix-turn-helix domain M1S54_12860 PF00027 Cyclic nucleotide-binding domain M1S54_12870 PF00248 Aldo/keto reductase family M1S54_12885 PF00709 Adenylosuccinate synthetase M1S54_12890 PF13393 Histidyl-tRNA synthetase M1S54_12895 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain M1S54_12895 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain M1S54_12900 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain M1S54_12900 PF01411 tRNA synthetases class II (A) M1S54_12900 PF02272 DHHA1 domain M1S54_12905 PF01842 ACT domain M1S54_12905 PF13840 ACT domain M1S54_12905 PF00696 Amino acid kinase family M1S54_12910 PF02599 Global regulator protein family M1S54_12915 PF01351 Ribonuclease HII M1S54_12925 PF01292 Prokaryotic cytochrome b561 M1S54_12930 PF00962 Adenosine/AMP deaminase M1S54_12935 PF00860 Permease family M1S54_12945 PF00743 Flavin-binding monooxygenase-like M1S54_12950 PF00106 short chain dehydrogenase M1S54_12960 PF17954 Quercetinase C-terminal cupin domain M1S54_12960 PF02678 Pirin M1S54_12965 PF17932 Tetracyclin repressor-like, C-terminal domain M1S54_12965 PF00440 Bacterial regulatory proteins, tetR family M1S54_12975 PF00106 short chain dehydrogenase M1S54_12985 PF13610 DDE domain M1S54_12995 PF00239 Resolvase, N terminal domain M1S54_12995 PF02796 Helix-turn-helix domain of resolvase M1S54_13000 PF00563 EAL domain M1S54_13000 PF11809 Domain of unknown function (DUF3330) M1S54_13010 PF13495 Phage integrase, N-terminal SAM-like domain M1S54_13010 PF00589 Phage integrase family M1S54_13015 PF13610 DDE domain M1S54_13020 PF01636 Phosphotransferase enzyme family M1S54_13035 PF13610 DDE domain M1S54_13040 PF00239 Resolvase, N terminal domain M1S54_13040 PF02796 Helix-turn-helix domain of resolvase M1S54_13050 PF13610 DDE domain M1S54_13060 PF02796 Helix-turn-helix domain of resolvase M1S54_13060 PF00239 Resolvase, N terminal domain M1S54_13065 PF13610 DDE domain M1S54_13075 PF04958 Arginine N-succinyltransferase beta subunit M1S54_13080 PF00202 Aminotransferase class-III M1S54_13100 PF00392 Bacterial regulatory proteins, gntR family M1S54_13100 PF07729 FCD domain M1S54_13110 PF00324 Amino acid permease M1S54_13115 PF01266 FAD dependent oxidoreductase M1S54_13120 PF00324 Amino acid permease M1S54_13160 PF05593 RHS Repeat M1S54_13160 PF03527 RHS protein M1S54_13165 PF13296 Putative type VI secretion system Rhs element Vgr M1S54_13165 PF10106 Uncharacterized protein conserved in bacteria (DUF2345) M1S54_13165 PF04717 Type VI secretion system, phage-baseplate injector M1S54_13185 PF03180 NLPA lipoprotein M1S54_13190 PF05987 Bacterial protein of unknown function (DUF898) M1S54_13205 PF00724 NADH:flavin oxidoreductase / NADH oxidase family M1S54_13205 PF07992 Pyridine nucleotide-disulphide oxidoreductase M1S54_13210 PF00764 Arginosuccinate synthase M1S54_13215 PF00360 Phytochrome region M1S54_13215 PF00990 Diguanylate cyclase, GGDEF domain M1S54_13215 PF01590 GAF domain M1S54_13215 PF00563 EAL domain M1S54_13220 PF01979 Amidohydrolase family M1S54_13225 PF00929 Exonuclease M1S54_13235 PF00593 TonB dependent receptor M1S54_13235 PF07715 TonB-dependent Receptor Plug Domain M1S54_13240 PF00724 NADH:flavin oxidoreductase / NADH oxidase family M1S54_13240 PF07992 Pyridine nucleotide-disulphide oxidoreductase M1S54_13245 PF00005 ABC transporter M1S54_13245 PF08352 Oligopeptide/dipeptide transporter, C-terminal region M1S54_13250 PF00528 Binding-protein-dependent transport system inner membrane component M1S54_13250 PF12911 N-terminal TM domain of oligopeptide transport permease C M1S54_13255 PF00528 Binding-protein-dependent transport system inner membrane component M1S54_13260 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle M1S54_13265 PF01464 Transglycosylase SLT domain M1S54_13265 PF01476 LysM domain M1S54_13265 PF01464 Transglycosylase SLT domain M1S54_13265 PF01476 LysM domain M1S54_13270 PF00929 Exonuclease M1S54_13280 PF00293 NUDIX domain M1S54_13280 PF09297 NADH pyrophosphatase zinc ribbon domain M1S54_13290 PF04972 BON domain M1S54_13295 PF02021 Uncharacterised protein family UPF0102 M1S54_13300 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases M1S54_13310 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M1S54_13310 PF03466 LysR substrate binding domain M1S54_13315 PF01810 LysE type translocator M1S54_13325 PF13411 MerR HTH family regulatory protein M1S54_13335 PF01494 FAD binding domain M1S54_13340 PF01494 FAD binding domain M1S54_13345 PF00557 Metallopeptidase family M24 M1S54_13345 PF05195 Aminopeptidase P, N-terminal domain M1S54_13430 PF01464 Transglycosylase SLT domain M1S54_13430 PF10145 Phage-related minor tail protein M1S54_13430 PF01551 Peptidase family M23 M1S54_13490 PF04860 Phage portal protein M1S54_13590 PF00772 DnaB-like helicase N terminal domain M1S54_13590 PF03796 DnaB-like helicase C terminal domain M1S54_13610 PF00717 Peptidase S24-like M1S54_13610 PF01726 LexA DNA binding domain M1S54_13665 PF00884 Sulfatase M1S54_13665 PF08019 Phosphoethanolamine transferase EptA/EptB M1S54_13710 PF01551 Peptidase family M23 M1S54_13710 PF08525 Opacity-associated protein A N-terminal motif M1S54_13710 PF01476 LysM domain M1S54_14035 PF01812 5-formyltetrahydrofolate cyclo-ligase family M1S54_14040 PF00691 OmpA family M1S54_14040 PF04355 SmpA / OmlA family M1S54_14045 PF05662 Coiled stalk of trimeric autotransporter adhesin M1S54_14045 PF13018 Extended Signal Peptide of Type V secretion system M1S54_14045 PF03895 YadA-like membrane anchor domain M1S54_14045 PF05658 Head domain of trimeric autotransporter adhesin M1S54_14050 PF00004 ATPase family associated with various cellular activities (AAA) M1S54_14050 PF05362 Lon protease (S16) C-terminal proteolytic domain M1S54_14050 PF02190 ATP-dependent protease La (LON) substrate-binding domain M1S54_14055 PF02590 Predicted SPOUT methyltransferase M1S54_14060 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase M1S54_14070 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain M1S54_14070 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase M1S54_14075 PF04060 Putative Fe-S cluster M1S54_14080 PF10576 Iron-sulfur binding domain of endonuclease III M1S54_14080 PF00633 Helix-hairpin-helix motif M1S54_14080 PF00730 HhH-GPD superfamily base excision DNA repair protein M1S54_14090 PF05191 Adenylate kinase, active site lid M1S54_14105 PF03717 Penicillin-binding Protein dimerisation domain M1S54_14105 PF00905 Penicillin binding protein transpeptidase domain M1S54_14120 PF02492 CobW/HypB/UreG, nucleotide-binding domain M1S54_14125 PF01730 UreF M1S54_14130 PF05194 UreE urease accessory protein, C-terminal domain M1S54_14130 PF02814 UreE urease accessory protein, N-terminal domain M1S54_14135 PF00449 Urease alpha-subunit, N-terminal domain M1S54_14135 PF01979 Amidohydrolase family M1S54_14140 PF00699 Urease beta subunit M1S54_14145 PF00547 Urease, gamma subunit M1S54_14150 PF01774 UreD urease accessory protein M1S54_14165 PF00463 Isocitrate lyase family M1S54_14170 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M1S54_14170 PF03466 LysR substrate binding domain M1S54_14175 PF01595 Cyclin M transmembrane N-terminal domain M1S54_14175 PF03471 Transporter associated domain M1S54_14175 PF00571 CBS domain M1S54_14180 PF03600 Citrate transporter M1S54_14195 PF00009 Elongation factor Tu GTP binding domain M1S54_14200 PF01507 Phosphoadenosine phosphosulfate reductase family M1S54_14210 PF14052 Capsule assembly protein Wzi M1S54_14215 PF00152 tRNA synthetases class II (D, K and N) M1S54_14215 PF01336 OB-fold nucleic acid binding domain M1S54_14230 PF00301 Rubredoxin M1S54_14235 PF07992 Pyridine nucleotide-disulphide oxidoreductase M1S54_14235 PF18113 Rubredoxin binding C-terminal domain M1S54_14240 PF00561 alpha/beta hydrolase fold M1S54_14245 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M1S54_14245 PF03466 LysR substrate binding domain M1S54_14255 PF13090 Polyphosphate kinase C-terminal domain 2 M1S54_14255 PF17941 Polyphosphate kinase C-terminal domain 1 M1S54_14255 PF13089 Polyphosphate kinase N-terminal domain M1S54_14255 PF02503 Polyphosphate kinase middle domain M1S54_14260 PF00912 Transglycosylase M1S54_14265 PF01694 Rhomboid family M1S54_14275 PF00005 ABC transporter M1S54_14280 PF13472 GDSL-like Lipase/Acylhydrolase family M1S54_14285 PF00484 Carbonic anhydrase M1S54_14290 PF00561 alpha/beta hydrolase fold M1S54_14300 PF07715 TonB-dependent Receptor Plug Domain M1S54_14300 PF00593 TonB dependent receptor M1S54_14305 PF01521 Iron-sulphur cluster biosynthesis M1S54_14305 PF01106 NifU-like domain M1S54_14315 PF00884 Sulfatase M1S54_14320 PF03781 Sulfatase-modifying factor enzyme 1 M1S54_14335 PF00291 Pyridoxal-phosphate dependent enzyme M1S54_14340 PF01384 Phosphate transporter family M1S54_14345 PF00809 Pterin binding enzyme M1S54_14345 PF02965 Vitamin B12 dependent methionine synthase, activation domain M1S54_14345 PF02607 B12 binding domain M1S54_14345 PF02310 B12 binding domain M1S54_14345 PF02574 Homocysteine S-methyltransferase M1S54_14350 PF02779 Transketolase, pyrimidine binding domain M1S54_14350 PF02780 Transketolase, C-terminal domain M1S54_14355 PF00456 Transketolase, thiamine diphosphate binding domain M1S54_14360 PF07690 Major Facilitator Superfamily M1S54_14370 PF03466 LysR substrate binding domain M1S54_14370 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M1S54_14380 PF01263 Aldose 1-epimerase M1S54_14385 PF07690 Major Facilitator Superfamily M1S54_14390 PF12833 Helix-turn-helix domain M1S54_14390 PF02311 AraC-like ligand binding domain M1S54_14395 PF04960 Glutaminase M1S54_14400 PF01327 Polypeptide deformylase M1S54_14405 PF07690 Major Facilitator Superfamily M1S54_14415 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain M1S54_14415 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain M1S54_14415 PF00205 Thiamine pyrophosphate enzyme, central domain M1S54_14420 PF00171 Aldehyde dehydrogenase family M1S54_14425 PF01958 Domain of unknown function DUF108 M1S54_14425 PF03447 Homoserine dehydrogenase, NAD binding domain M1S54_14435 PF12697 Alpha/beta hydrolase family M1S54_14445 PF07690 Major Facilitator Superfamily M1S54_14450 PF07992 Pyridine nucleotide-disulphide oxidoreductase M1S54_14450 PF14759 Reductase C-terminal M1S54_14455 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily M1S54_14465 PF00355 Rieske [2Fe-2S] domain M1S54_14475 PF00355 Rieske [2Fe-2S] domain M1S54_14480 PF09339 IclR helix-turn-helix domain M1S54_14480 PF01614 Bacterial transcriptional regulator M1S54_14495 PF00378 Enoyl-CoA hydratase/isomerase M1S54_14505 PF00535 Glycosyl transferase family 2 M1S54_14510 PF14883 Hypothetical glycosyl hydrolase family 13 M1S54_14510 PF01522 Polysaccharide deacetylase M1S54_14515 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase M1S54_14520 PF07152 YaeQ protein M1S54_14525 PF00375 Sodium:dicarboxylate symporter family M1S54_14530 PF02492 CobW/HypB/UreG, nucleotide-binding domain M1S54_14530 PF07683 Cobalamin synthesis protein cobW C-terminal domain M1S54_14540 PF03061 Thioesterase superfamily M1S54_14550 PF02028 BCCT, betaine/carnitine/choline family transporter M1S54_14555 PF02028 BCCT, betaine/carnitine/choline family transporter M1S54_14560 PF13977 BetI-type transcriptional repressor, C-terminal M1S54_14560 PF00440 Bacterial regulatory proteins, tetR family M1S54_14565 PF00171 Aldehyde dehydrogenase family M1S54_14570 PF00732 GMC oxidoreductase M1S54_14570 PF05199 GMC oxidoreductase M1S54_14575 PF06039 Malate:quinone oxidoreductase (Mqo) M1S54_14585 PF02574 Homocysteine S-methyltransferase M1S54_14590 PF13520 Amino acid permease M1S54_14615 PF01126 Heme oxygenase M1S54_14625 PF04575 Protein of unknown function (DUF560) M1S54_14635 PF07715 TonB-dependent Receptor Plug Domain M1S54_14635 PF00593 TonB dependent receptor M1S54_14645 PF04542 Sigma-70 region 2 M1S54_14645 PF08281 Sigma-70, region 4 M1S54_14655 PF00701 Dihydrodipicolinate synthetase family M1S54_14660 PF00083 Sugar (and other) transporter M1S54_14680 PF01026 TatD related DNase M1S54_14695 PF07693 KAP family P-loop domain M1S54_14715 PF00436 Single-strand binding protein family M1S54_14770 PF00589 Phage integrase family M1S54_14770 PF13356 Arm DNA-binding domain M1S54_14810 PF10544 T5orf172 domain M1S54_14815 PF13614 AAA domain M1S54_14835 PF00905 Penicillin binding protein transpeptidase domain M1S54_14935 PF00712 DNA polymerase III beta subunit, N-terminal domain M1S54_14935 PF02767 DNA polymerase III beta subunit, central domain M1S54_14935 PF02768 DNA polymerase III beta subunit, C-terminal domain M1S54_14975 PF05016 ParE toxin of type II toxin-antitoxin system, parDE M1S54_15175 PF01695 IstB-like ATP binding protein M1S54_15185 PF00145 C-5 cytosine-specific DNA methylase M1S54_15265 PF00929 Exonuclease M1S54_15340 PF07690 Major Facilitator Superfamily M1S54_15345 PF13533 Biotin-lipoyl like M1S54_15350 PF03061 Thioesterase superfamily M1S54_15355 PF00490 Delta-aminolevulinic acid dehydratase M1S54_15360 PF01266 FAD dependent oxidoreductase M1S54_15365 PF08338 Domain of unknown function (DUF1731) M1S54_15365 PF01370 NAD dependent epimerase/dehydratase family M1S54_15385 PF12320 Type 5 capsule protein repressor C-terminal domain M1S54_15385 PF00149 Calcineurin-like phosphoesterase M1S54_15395 PF01168 Alanine racemase, N-terminal domain M1S54_15400 PF00437 Type II/IV secretion system protein M1S54_15405 PF00437 Type II/IV secretion system protein M1S54_15410 PF01475 Ferric uptake regulator family M1S54_15415 PF04355 SmpA / OmlA family M1S54_15420 PF03658 RnfH family Ubiquitin M1S54_15430 PF01814 Hemerythrin HHE cation binding domain M1S54_15435 PF13230 Glutamine amidotransferases class-II M1S54_15445 PF00696 Amino acid kinase family M1S54_15450 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain M1S54_15450 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I M1S54_15450 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III M1S54_15450 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II M1S54_15455 PF00692 dUTPase M1S54_15460 PF00580 UvrD/REP helicase N-terminal domain M1S54_15460 PF13361 UvrD-like helicase C-terminal domain M1S54_15465 PF00691 OmpA family M1S54_15465 PF13488 Glycine zipper M1S54_15470 PF01553 Acyltransferase M1S54_15480 PF03775 Septum formation inhibitor MinC, C-terminal domain M1S54_15485 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain M1S54_15490 PF03776 Septum formation topological specificity factor MinE M1S54_15510 PF01810 LysE type translocator M1S54_15515 PF09397 Ftsk gamma domain M1S54_15515 PF17854 FtsK alpha domain M1S54_15515 PF13491 4TM region of DNA translocase FtsK/SpoIIIE M1S54_15515 PF01580 FtsK/SpoIIIE family M1S54_15520 PF07992 Pyridine nucleotide-disulphide oxidoreductase M1S54_15525 PF03588 Leucyl/phenylalanyl-tRNA protein transferase M1S54_15530 PF04377 Arginine-tRNA-protein transferase, C terminus M1S54_15530 PF04376 Arginine-tRNA-protein transferase, N terminus M1S54_15535 PF00583 Acetyltransferase (GNAT) family M1S54_15555 PF00679 Elongation factor G C-terminus M1S54_15555 PF14492 Elongation Factor G, domain II M1S54_15555 PF00009 Elongation factor Tu GTP binding domain M1S54_15555 PF03144 Elongation factor Tu domain 2 M1S54_15555 PF03764 Elongation factor G, domain IV M1S54_15560 PF00177 Ribosomal protein S7p/S5e M1S54_15565 PF00164 Ribosomal protein S12/S23 M1S54_15575 PF02801 Beta-ketoacyl synthase, C-terminal domain M1S54_15575 PF00109 Beta-ketoacyl synthase, N-terminal domain M1S54_15580 PF03653 Uncharacterised protein family (UPF0093) M1S54_15585 PF05726 Pirin C-terminal cupin domain M1S54_15585 PF02678 Pirin M1S54_15595 PF00795 Carbon-nitrogen hydrolase M1S54_15595 PF02540 NAD synthase M1S54_15610 PF00970 Oxidoreductase FAD-binding domain M1S54_15610 PF00111 2Fe-2S iron-sulfur cluster binding domain M1S54_15610 PF00175 Oxidoreductase NAD-binding domain M1S54_15615 PF00171 Aldehyde dehydrogenase family M1S54_15620 PF00355 Rieske [2Fe-2S] domain M1S54_15620 PF00848 Ring hydroxylating alpha subunit (catalytic domain) M1S54_15625 PF07859 alpha/beta hydrolase fold M1S54_15630 PF02028 BCCT, betaine/carnitine/choline family transporter M1S54_15635 PF00180 Isocitrate/isopropylmalate dehydrogenase M1S54_15640 PF03466 LysR substrate binding domain M1S54_15640 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M1S54_15660 PF00037 4Fe-4S binding domain M1S54_15665 PF01467 Cytidylyltransferase-like M1S54_15670 PF01668 SmpB protein M1S54_15675 PF03358 NADPH-dependent FMN reductase M1S54_15680 PF02578 Multi-copper polyphenol oxidoreductase laccase M1S54_15685 PF01479 S4 domain M1S54_15685 PF00849 RNA pseudouridylate synthase M1S54_15690 PF13525 Outer membrane lipoprotein M1S54_15695 PF01807 CHC2 zinc finger M1S54_15695 PF08275 DNA primase catalytic core, N-terminal domain M1S54_15695 PF08278 DNA primase DnaG DnaB-binding M1S54_15695 PF10410 DnaB-helicase binding domain of primase M1S54_15700 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain M1S54_15700 PF01488 Shikimate / quinate 5-dehydrogenase M1S54_15700 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain M1S54_15710 PF03550 Outer membrane lipoprotein LolB M1S54_15715 PF08544 GHMP kinases C terminal M1S54_15715 PF00288 GHMP kinases N terminal domain M1S54_15740 PF14572 Phosphoribosyl synthetase-associated domain M1S54_15740 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase M1S54_15745 PF01386 Ribosomal L25p family M1S54_15750 PF01195 Peptidyl-tRNA hydrolase M1S54_15755 PF02261 Aspartate decarboxylase M1S54_15770 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase M1S54_15780 PF02581 Thiamine monophosphate synthase M1S54_15780 PF03070 TENA/THI-4/PQQC family M1S54_15780 PF08543 Phosphomethylpyrimidine kinase M1S54_15785 PF04972 BON domain M1S54_15785 PF01476 LysM domain M1S54_15790 PF00550 Phosphopantetheine attachment site M1S54_15800 PF00698 Acyl transferase domain M1S54_15805 PF01783 Ribosomal L32p protein family M1S54_15810 PF02620 Large ribosomal RNA subunit accumulation protein YceD M1S54_15815 PF04315 Elongation factor P hydroxylase M1S54_15820 PF01300 Telomere recombination M1S54_15825 PF02616 Segregation and condensation protein ScpA M1S54_15830 PF04079 Segregation and condensation complex subunit ScpB M1S54_15835 PF00849 RNA pseudouridylate synthase M1S54_15835 PF01479 S4 domain M1S54_15850 PF00155 Aminotransferase class I and II M1S54_15855 PF04055 Radical SAM superfamily M1S54_15855 PF00202 Aminotransferase class-III M1S54_15855 PF06968 Biotin and Thiamin Synthesis associated domain M1S54_15860 PF12697 Alpha/beta hydrolase family M1S54_15860 PF08241 Methyltransferase domain M1S54_15865 PF02358 Trehalose-phosphatase M1S54_15870 PF00982 Glycosyltransferase family 20 M1S54_15875 PF07690 Major Facilitator Superfamily M1S54_15880 PF00210 Ferritin-like domain M1S54_15885 PF03120 NAD-dependent DNA ligase OB-fold domain M1S54_15885 PF00533 BRCA1 C Terminus (BRCT) domain M1S54_15885 PF12826 Helix-hairpin-helix motif M1S54_15885 PF01653 NAD-dependent DNA ligase adenylation domain M1S54_15885 PF03119 NAD-dependent DNA ligase C4 zinc finger domain M1S54_15895 PF06470 SMC proteins Flexible Hinge Domain M1S54_15895 PF02463 RecF/RecN/SMC N terminal domain M1S54_15905 PF01925 Sulfite exporter TauE/SafE M1S54_15915 PF03309 Type III pantothenate kinase M1S54_15920 PF00448 SRP54-type protein, GTPase domain M1S54_15920 PF02978 Signal peptide binding domain M1S54_15920 PF02881 SRP54-type protein, helical bundle domain M1S54_15930 PF01207 Dihydrouridine synthase (Dus) M1S54_15960 PF00692 dUTPase M1S54_15975 PF01048 Phosphorylase superfamily M1S54_15980 PF10609 NUBPL iron-transfer P-loop NTPase M1S54_15990 PF01588 Putative tRNA binding domain M1S54_15990 PF09334 tRNA synthetases class I (M) M1S54_16015 PF13533 Biotin-lipoyl like M1S54_16020 PF00291 Pyridoxal-phosphate dependent enzyme M1S54_16035 PF05552 Conserved TM helix M1S54_16050 PF00175 Oxidoreductase NAD-binding domain M1S54_16050 PF00970 Oxidoreductase FAD-binding domain M1S54_16055 PF03466 LysR substrate binding domain M1S54_16055 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M1S54_16060 PF00313 'Cold-shock' DNA-binding domain M1S54_16070 PF00361 Proton-conducting membrane transporter M1S54_16075 PF00361 Proton-conducting membrane transporter M1S54_16080 PF00361 Proton-conducting membrane transporter M1S54_16080 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus M1S54_16085 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L M1S54_16090 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 M1S54_16095 PF12838 4Fe-4S dicluster domain M1S54_16100 PF00146 NADH dehydrogenase M1S54_16105 PF04879 Molybdopterin oxidoreductase Fe4S4 domain M1S54_16105 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region M1S54_16105 PF00384 Molybdopterin oxidoreductase M1S54_16110 PF10531 SLBB domain M1S54_16110 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region M1S54_16110 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit M1S54_16120 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit M1S54_16120 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit M1S54_16125 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit M1S54_16130 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 M1S54_16135 PF00990 Diguanylate cyclase, GGDEF domain M1S54_16135 PF17151 Periplasmic sensor domain M1S54_16145 PF00672 HAMP domain M1S54_16145 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M1S54_16145 PF00512 His Kinase A (phospho-acceptor) domain M1S54_16150 PF00072 Response regulator receiver domain M1S54_16150 PF00486 Transcriptional regulatory protein, C terminal M1S54_16160 PF03477 ATP cone domain M1S54_16160 PF02867 Ribonucleotide reductase, barrel domain M1S54_16160 PF00317 Ribonucleotide reductase, all-alpha domain M1S54_16170 PF00268 Ribonucleotide reductase, small chain M1S54_16180 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M1S54_16180 PF00512 His Kinase A (phospho-acceptor) domain M1S54_16180 PF13755 Sensor N-terminal transmembrane domain M1S54_16180 PF13756 Stimulus-sensing domain M1S54_16180 PF00672 HAMP domain M1S54_16250 PF01011 PQQ enzyme repeat M1S54_16250 PF13360 PQQ-like domain M1S54_16275 PF02567 Phenazine biosynthesis-like protein M1S54_16300 PF01613 Flavin reductase like domain M1S54_16305 PF08267 Cobalamin-independent synthase, N-terminal domain M1S54_16305 PF01717 Cobalamin-independent synthase, Catalytic domain M1S54_16315 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M1S54_16315 PF03466 LysR substrate binding domain M1S54_16320 PF01810 LysE type translocator M1S54_16330 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term M1S54_16330 PF12833 Helix-turn-helix domain M1S54_16335 PF01546 Peptidase family M20/M25/M40 M1S54_16335 PF07687 Peptidase dimerisation domain M1S54_16345 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M1S54_16345 PF03466 LysR substrate binding domain M1S54_16350 PF07690 Major Facilitator Superfamily M1S54_16360 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M1S54_16360 PF03466 LysR substrate binding domain M1S54_16365 PF14537 Cytochrome c3 M1S54_16365 PF00890 FAD binding domain M1S54_16375 PF02515 CoA-transferase family III M1S54_16380 PF07690 Major Facilitator Superfamily M1S54_16385 PF02771 Acyl-CoA dehydrogenase, N-terminal domain M1S54_16385 PF02770 Acyl-CoA dehydrogenase, middle domain M1S54_16385 PF00441 Acyl-CoA dehydrogenase, C-terminal domain M1S54_16390 PF03466 LysR substrate binding domain M1S54_16390 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M1S54_16395 PF00107 Zinc-binding dehydrogenase M1S54_16395 PF08240 Alcohol dehydrogenase GroES-like domain M1S54_16400 PF00962 Adenosine/AMP deaminase M1S54_16425 PF02445 Quinolinate synthetase A protein M1S54_16430 PF01960 ArgJ family M1S54_16435 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain M1S54_16435 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain M1S54_16440 PF00893 Small Multidrug Resistance protein M1S54_16450 PF05275 Copper resistance protein B precursor (CopB) M1S54_16455 PF07731 Multicopper oxidase M1S54_16455 PF00394 Multicopper oxidase M1S54_16455 PF07732 Multicopper oxidase M1S54_16470 PF00834 Ribulose-phosphate 3 epimerase family M1S54_16480 PF00756 Putative esterase M1S54_16490 PF04445 Putative SAM-dependent methyltransferase M1S54_16495 PF00814 Glycoprotease family M1S54_16500 PF00132 Bacterial transferase hexapeptide (six repeats) M1S54_16505 PF00293 NUDIX domain M1S54_16545 PF04715 Anthranilate synthase component I, N terminal region M1S54_16545 PF00425 chorismate binding enzyme M1S54_16550 PF00155 Aminotransferase class I and II M1S54_16555 PF00815 Histidinol dehydrogenase M1S54_16560 PF01634 ATP phosphoribosyltransferase M1S54_16565 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) M1S54_16570 PF01722 BolA-like protein M1S54_16575 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein M1S54_16580 PF04963 Sigma-54 factor, core binding domain M1S54_16580 PF04552 Sigma-54, DNA binding domain M1S54_16580 PF00309 Sigma-54 factor, Activator interacting domain (AID) M1S54_16625 PF00795 Carbon-nitrogen hydrolase M1S54_16635 PF01047 MarR family M1S54_16640 PF02566 OsmC-like protein M1S54_16645 PF00437 Type II/IV secretion system protein M1S54_16665 PF01612 3'-5' exonuclease M1S54_16665 PF00476 DNA polymerase family A M1S54_16665 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain M1S54_16665 PF01367 5'-3' exonuclease, C-terminal SAM fold M1S54_16670 PF02325 YGGT family M1S54_16675 PF14748 Pyrroline-5-carboxylate reductase dimerisation M1S54_16675 PF03807 NADP oxidoreductase coenzyme F420-dependent M1S54_16680 PF11734 TilS substrate C-terminal domain M1S54_16680 PF01171 PP-loop family M1S54_16680 PF09179 TilS substrate binding domain M1S54_16685 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit M1S54_16690 PF02541 Ppx/GppA phosphatase family M1S54_16695 PF00085 Thioredoxin M1S54_16700 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain M1S54_16700 PF07498 Rho termination factor, N-terminal domain M1S54_16700 PF07497 Rho termination factor, RNA-binding domain M1S54_16715 PF00216 Bacterial DNA-binding protein M1S54_16720 PF03483 B3/4 domain M1S54_16720 PF03484 tRNA synthetase B5 domain M1S54_16720 PF03147 Ferredoxin-fold anticodon binding domain M1S54_16720 PF01588 Putative tRNA binding domain M1S54_16720 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain M1S54_16725 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain M1S54_16725 PF01409 tRNA synthetases class II core domain (F) M1S54_16745 PF00453 Ribosomal protein L20 M1S54_16750 PF01632 Ribosomal protein L35 M1S54_16760 PF07690 Major Facilitator Superfamily M1S54_16765 PF09335 SNARE associated Golgi protein M1S54_16770 PF00043 Glutathione S-transferase, C-terminal domain M1S54_16770 PF02798 Glutathione S-transferase, N-terminal domain M1S54_16775 PF00707 Translation initiation factor IF-3, C-terminal domain M1S54_16775 PF05198 Translation initiation factor IF-3, N-terminal domain M1S54_16780 PF03129 Anticodon binding domain M1S54_16780 PF02824 TGS domain M1S54_16780 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) M1S54_16780 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain M1S54_16785 PF00501 AMP-binding enzyme M1S54_16785 PF13193 AMP-binding enzyme C-terminal domain M1S54_16790 PF04751 Protein of unknown function (DUF615) M1S54_16795 PF00381 PTS HPr component phosphorylation site M1S54_16800 PF03668 P-loop ATPase protein family M1S54_16805 PF02569 Pantoate-beta-alanine ligase M1S54_16810 PF02548 Ketopantoate hydroxymethyltransferase M1S54_16815 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) M1S54_16820 PF01743 Poly A polymerase head domain M1S54_16820 PF12626 Polymerase A arginine-rich C-terminus M1S54_16820 PF12627 Probable RNA and SrmB- binding site of polymerase A M1S54_16830 PF03819 MazG nucleotide pyrophosphohydrolase domain M1S54_16840 PF13291 ACT domain M1S54_16840 PF04607 Region found in RelA / SpoT proteins M1S54_16840 PF02824 TGS domain M1S54_16845 PF05958 tRNA (Uracil-5-)-methyltransferase M1S54_16855 PF00291 Pyridoxal-phosphate dependent enzyme M1S54_16860 PF00672 HAMP domain M1S54_16860 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M1S54_16860 PF00512 His Kinase A (phospho-acceptor) domain M1S54_16860 PF01627 Hpt domain M1S54_16860 PF00072 Response regulator receiver domain M1S54_16860 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) M1S54_16865 PF00378 Enoyl-CoA hydratase/isomerase M1S54_16870 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase M1S54_16870 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase M1S54_16875 PF01261 Xylose isomerase-like TIM barrel M1S54_16885 PF00106 short chain dehydrogenase M1S54_16890 PF02233 NAD(P) transhydrogenase beta subunit M1S54_16895 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch M1S54_16900 PF01262 Alanine dehydrogenase/PNT, C-terminal domain M1S54_16900 PF05222 Alanine dehydrogenase/PNT, N-terminal domain M1S54_16905 PF00892 EamA-like transporter family M1S54_16915 PF07690 Major Facilitator Superfamily M1S54_16920 PF01207 Dihydrouridine synthase (Dus) M1S54_16930 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M1S54_16930 PF03466 LysR substrate binding domain M1S54_16940 PF00899 ThiF family M1S54_16950 PF00330 Aconitase family (aconitate hydratase) M1S54_16950 PF00694 Aconitase C-terminal domain M1S54_16955 PF01026 TatD related DNase M1S54_16970 PF00009 Elongation factor Tu GTP binding domain M1S54_16970 PF03144 Elongation factor Tu domain 2 M1S54_16970 PF16658 Class II release factor RF3, C-terminal domain M1S54_16990 PF00563 EAL domain M1S54_16990 PF00990 Diguanylate cyclase, GGDEF domain M1S54_16990 PF03707 Bacterial signalling protein N terminal repeat M1S54_16995 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain M1S54_16995 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain M1S54_17000 PF10369 Small subunit of acetolactate synthase M1S54_17005 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain M1S54_17005 PF00205 Thiamine pyrophosphate enzyme, central domain M1S54_17005 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain M1S54_17015 PF08264 Anticodon-binding domain of tRNA M1S54_17015 PF00133 tRNA synthetases class I (I, L, M and V) M1S54_17015 PF13603 Leucyl-tRNA synthetase, Domain 2 M1S54_17015 PF09334 tRNA synthetases class I (M) M1S54_17030 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion M1S54_17035 PF00005 ABC transporter M1S54_17035 PF12704 MacB-like periplasmic core domain M1S54_17035 PF02687 FtsX-like permease family M1S54_17040 PF02321 Outer membrane efflux protein M1S54_17055 PF00929 Exonuclease M1S54_17060 PF03193 RsgA GTPase M1S54_17070 PF00462 Glutaredoxin M1S54_17075 PF02556 Preprotein translocase subunit SecB M1S54_17090 PF00109 Beta-ketoacyl synthase, N-terminal domain M1S54_17090 PF02801 Beta-ketoacyl synthase, C-terminal domain M1S54_17105 PF00109 Beta-ketoacyl synthase, N-terminal domain M1S54_17105 PF02801 Beta-ketoacyl synthase, C-terminal domain M1S54_17115 PF04820 Tryptophan halogenase M1S54_17135 PF00221 Aromatic amino acid lyase M1S54_17150 PF13193 AMP-binding enzyme C-terminal domain M1S54_17150 PF00501 AMP-binding enzyme M1S54_17160 PF00550 Phosphopantetheine attachment site M1S54_17165 PF00550 Phosphopantetheine attachment site M1S54_17180 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal M1S54_17180 PF01926 50S ribosome-binding GTPase M1S54_17185 PF13360 PQQ-like domain M1S54_17195 PF03129 Anticodon binding domain M1S54_17195 PF13393 Histidyl-tRNA synthetase M1S54_17200 PF04551 GcpE protein M1S54_17205 PF13464 Domain of unknown function (DUF4115) M1S54_17215 PF04055 Radical SAM superfamily M1S54_17220 PF00334 Nucleoside diphosphate kinase M1S54_17225 PF04384 Iron-sulphur cluster assembly M1S54_17230 PF01569 PAP2 superfamily M1S54_17235 PF13439 Glycosyltransferase Family 4 M1S54_17235 PF00534 Glycosyl transferases group 1 M1S54_17240 PF11818 C-terminal domain of tail specific protease (DUF3340) M1S54_17240 PF03572 Peptidase family S41 M1S54_17240 PF17804 Tail specific protease N-terminal domain M1S54_17240 PF00595 PDZ domain M1S54_17245 PF00933 Glycosyl hydrolase family 3 N terminal domain M1S54_17255 PF00561 alpha/beta hydrolase fold M1S54_17260 PF00171 Aldehyde dehydrogenase family M1S54_17265 PF00171 Aldehyde dehydrogenase family M1S54_17270 PF01202 Shikimate kinase M1S54_17275 PF02447 GntP family permease M1S54_17280 PF01081 KDPG and KHG aldolase M1S54_17285 PF00920 Dehydratase family M1S54_17290 PF00871 Acetokinase family M1S54_17295 PF07085 DRTGG domain M1S54_17295 PF01515 Phosphate acetyl/butaryl transferase M1S54_17300 PF05681 Fumarate hydratase (Fumerase) M1S54_17300 PF05683 Fumarase C-terminus M1S54_17315 PF06689 ClpX C4-type zinc finger M1S54_17315 PF07724 AAA domain (Cdc48 subfamily) M1S54_17315 PF10431 C-terminal, D2-small domain, of ClpB protein M1S54_17320 PF00574 Clp protease M1S54_17325 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase M1S54_17325 PF05698 Bacterial trigger factor protein (TF) C-terminus M1S54_17325 PF05697 Bacterial trigger factor protein (TF) M1S54_17330 PF07715 TonB-dependent Receptor Plug Domain M1S54_17330 PF00593 TonB dependent receptor M1S54_17335 PF13640 2OG-Fe(II) oxygenase superfamily M1S54_17335 PF18331 PKHD-type hydroxylase C-terminal domain M1S54_17340 PF00682 HMGL-like M1S54_17340 PF08502 LeuA allosteric (dimerisation) domain M1S54_17345 PF00561 alpha/beta hydrolase fold M1S54_17350 PF00561 alpha/beta hydrolase fold M1S54_17350 PF07021 Methionine biosynthesis protein MetW M1S54_17360 PF01725 Ham1 family M1S54_17370 PF02416 mttA/Hcf106 family M1S54_17375 PF02416 mttA/Hcf106 family M1S54_17380 PF00902 Sec-independent protein translocase protein (TatC) M1S54_17400 PF01790 Prolipoprotein diacylglyceryl transferase M1S54_17415 PF00303 Thymidylate synthase M1S54_17420 PF00186 Dihydrofolate reductase M1S54_17430 PF01625 Peptide methionine sulfoxide reductase M1S54_17440 PF01618 MotA/TolQ/ExbB proton channel family M1S54_17450 PF01842 ACT domain M1S54_17450 PF00551 Formyl transferase M1S54_17460 PF00171 Aldehyde dehydrogenase family M1S54_17465 PF00830 Ribosomal L28 family M1S54_17470 PF00471 Ribosomal protein L33 M1S54_17475 PF00999 Sodium/hydrogen exchanger family M1S54_17475 PF02254 TrkA-N domain M1S54_17495 PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) M1S54_17500 PF13361 UvrD-like helicase C-terminal domain M1S54_17500 PF00580 UvrD/REP helicase N-terminal domain M1S54_17515 PF08272 Topoisomerase I zinc-ribbon-like M1S54_17515 PF01131 DNA topoisomerase M1S54_17515 PF01751 Toprim domain M1S54_17515 PF01396 Topoisomerase DNA binding C4 zinc finger M1S54_17525 PF01638 HxlR-like helix-turn-helix M1S54_17530 PF08240 Alcohol dehydrogenase GroES-like domain M1S54_17530 PF00107 Zinc-binding dehydrogenase M1S54_17535 PF04102 SlyX M1S54_17540 PF12848 ABC transporter M1S54_17540 PF00005 ABC transporter M1S54_17540 PF16326 ABC transporter C-terminal domain M1S54_17545 PF01810 LysE type translocator M1S54_17550 PF03279 Bacterial lipid A biosynthesis acyltransferase M1S54_17560 PF00375 Sodium:dicarboxylate symporter family M1S54_17570 PF01118 Semialdehyde dehydrogenase, NAD binding domain M1S54_17570 PF02774 Semialdehyde dehydrogenase, dimerisation domain M1S54_17590 PF01416 tRNA pseudouridine synthase M1S54_17600 PF01176 Translation initiation factor 1A / IF-1 M1S54_17615 PF00180 Isocitrate/isopropylmalate dehydrogenase M1S54_17625 PF00694 Aconitase C-terminal domain M1S54_17630 PF00330 Aconitase family (aconitate hydratase) M1S54_17640 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M1S54_17640 PF03466 LysR substrate binding domain M1S54_17660 PF00293 NUDIX domain M1S54_17665 PF01590 GAF domain M1S54_17665 PF05524 PEP-utilising enzyme, N-terminal M1S54_17665 PF00391 PEP-utilising enzyme, mobile domain M1S54_17665 PF02896 PEP-utilising enzyme, TIM barrel domain M1S54_17670 PF00141 Peroxidase M1S54_17675 PF12706 Beta-lactamase superfamily domain M1S54_17680 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M1S54_17680 PF03466 LysR substrate binding domain M1S54_17690 PF02798 Glutathione S-transferase, N-terminal domain M1S54_17695 PF08279 HTH domain M1S54_17695 PF13280 WYL domain M1S54_17700 PF13419 Haloacid dehalogenase-like hydrolase M1S54_17705 PF00849 RNA pseudouridylate synthase M1S54_17705 PF01479 S4 domain M1S54_17710 PF12111 Polyribonucleotide phosphorylase C terminal M1S54_17710 PF10150 Ribonuclease E/G family M1S54_17710 PF00575 S1 RNA binding domain M1S54_17715 PF13193 AMP-binding enzyme C-terminal domain M1S54_17715 PF00501 AMP-binding enzyme M1S54_17730 PF03466 LysR substrate binding domain M1S54_17730 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M1S54_17735 PF00106 short chain dehydrogenase M1S54_17740 PF06969 HemN C-terminal domain M1S54_17740 PF04055 Radical SAM superfamily M1S54_17750 PF01554 MatE M1S54_17755 PF02770 Acyl-CoA dehydrogenase, middle domain M1S54_17755 PF02771 Acyl-CoA dehydrogenase, N-terminal domain M1S54_17755 PF08028 Acyl-CoA dehydrogenase, C-terminal domain M1S54_17760 PF02771 Acyl-CoA dehydrogenase, N-terminal domain M1S54_17760 PF08028 Acyl-CoA dehydrogenase, C-terminal domain M1S54_17765 PF03109 ABC1 family M1S54_17770 PF01197 Ribosomal protein L31 M1S54_17785 PF02537 CrcB-like protein, Camphor Resistance (CrcB) M1S54_17805 PF03884 DNA gyrase inhibitor YacG M1S54_17810 PF00753 Metallo-beta-lactamase superfamily M1S54_17815 PF00762 Ferrochelatase M1S54_17825 PF01177 Asp/Glu/Hydantoin racemase M1S54_17840 PF01206 Sulfurtransferase TusA M1S54_17845 PF00571 CBS domain M1S54_17845 PF03471 Transporter associated domain M1S54_17850 PF00795 Carbon-nitrogen hydrolase M1S54_17855 PF01588 Putative tRNA binding domain M1S54_17865 PF07963 Prokaryotic N-terminal methylation motif M1S54_17865 PF08334 Type II secretion system (T2SS), protein G M1S54_17870 PF00482 Type II secretion system (T2SS), protein F M1S54_17875 PF00270 DEAD/DEAH box helicase M1S54_17875 PF00271 Helicase conserved C-terminal domain M1S54_17875 PF17764 3′ DNA-binding domain (3′BD) M1S54_17875 PF18074 Primosomal protein N C-terminal domain M1S54_17875 PF18319 PriA DNA helicase Cys-rich region (CRR) domain M1S54_17880 PF02254 TrkA-N domain M1S54_17880 PF00999 Sodium/hydrogen exchanger family M1S54_17885 PF01430 Hsp33 protein M1S54_17895 PF01556 DnaJ C terminal domain M1S54_17895 PF00226 DnaJ domain M1S54_17905 PF01544 CorA-like Mg2+ transporter protein M1S54_17910 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain M1S54_17910 PF01138 3' exoribonuclease family, domain 1 M1S54_17910 PF03725 3' exoribonuclease family, domain 2 M1S54_17910 PF00575 S1 RNA binding domain M1S54_17910 PF00013 KH domain M1S54_17915 PF00312 Ribosomal protein S15 M1S54_17920 PF00144 Beta-lactamase M1S54_17925 PF13538 UvrD-like helicase C-terminal domain M1S54_17930 PF00580 UvrD/REP helicase N-terminal domain M1S54_17930 PF13361 UvrD-like helicase C-terminal domain M1S54_17930 PF12705 PD-(D/E)XK nuclease superfamily M1S54_17935 PF17946 RecC C-terminal domain M1S54_17945 PF03976 Polyphosphate kinase 2 (PPK2) M1S54_17955 PF01209 ubiE/COQ5 methyltransferase family M1S54_17965 PF03109 ABC1 family M1S54_17970 PF01494 FAD binding domain M1S54_17975 PF01502 Phosphoribosyl-AMP cyclohydrolase M1S54_17990 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus M1S54_17990 PF00361 Proton-conducting membrane transporter M1S54_17990 PF13244 Domain of unknown function (DUF4040) M1S54_17990 PF04039 Domain related to MnhB subunit of Na+/H+ antiporter M1S54_17995 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L M1S54_18000 PF00361 Proton-conducting membrane transporter M1S54_18005 PF01899 Na+/H+ ion antiporter subunit M1S54_18010 PF04066 Multiple resistance and pH regulation protein F (MrpF / PhaF) M1S54_18015 PF03334 Na+/H+ antiporter subunit M1S54_18020 PF02033 Ribosome-binding factor A M1S54_18025 PF04760 Translation initiation factor IF-2, N-terminal region M1S54_18025 PF08364 Bacterial translation initiation factor IF-2 associated region M1S54_18025 PF11987 Translation-initiation factor 2 M1S54_18025 PF00009 Elongation factor Tu GTP binding domain M1S54_18030 PF08529 NusA N-terminal domain M1S54_18030 PF13184 NusA-like KH domain M1S54_18030 PF00575 S1 RNA binding domain M1S54_18035 PF02576 RimP N-terminal domain M1S54_18035 PF17384 RimP C-terminal SH3 domain M1S54_18055 PF03840 Preprotein translocase SecG subunit M1S54_18060 PF00121 Triosephosphate isomerase M1S54_18065 PF00437 Type II/IV secretion system protein M1S54_18065 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain M1S54_18070 PF00482 Type II secretion system (T2SS), protein F M1S54_18080 PF06750 Bacterial Peptidase A24 N-terminal domain M1S54_18080 PF01478 Type IV leader peptidase family M1S54_18085 PF01121 Dephospho-CoA kinase M1S54_18095 PF00588 SpoU rRNA Methylase family M1S54_18095 PF08032 RNA 2'-O ribose methyltransferase substrate binding M1S54_18100 PF06865 Pyrimidine/purine nucleoside phosphorylase M1S54_18110 PF02463 RecF/RecN/SMC N terminal domain M1S54_18115 PF02622 Uncharacterized ACR, COG1678 M1S54_18120 PF03652 Holliday junction resolvase M1S54_18125 PF13533 Biotin-lipoyl like M1S54_18150 PF02805 Metal binding domain of Ada M1S54_18150 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain M1S54_18150 PF12833 Helix-turn-helix domain M1S54_18150 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain M1S54_18155 PF01066 CDP-alcohol phosphatidyltransferase M1S54_18165 PF01541 GIY-YIG catalytic domain M1S54_18165 PF02151 UvrB/uvrC motif M1S54_18165 PF08459 UvrC Helix-hairpin-helix N-terminal M1S54_18185 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain M1S54_18185 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain M1S54_18185 PF00378 Enoyl-CoA hydratase/isomerase M1S54_18190 PF02803 Thiolase, C-terminal domain M1S54_18190 PF00108 Thiolase, N-terminal domain M1S54_18210 PF00376 MerR family regulatory protein M1S54_18210 PF09278 MerR, DNA binding M1S54_18220 PF01323 DSBA-like thioredoxin domain M1S54_18235 PF00183 Hsp90 protein M1S54_18235 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M1S54_18250 PF13726 Na+-H+ antiporter family M1S54_18250 PF03553 Na+/H+ antiporter family M1S54_18255 PF00561 alpha/beta hydrolase fold M1S54_18275 PF04983 RNA polymerase Rpb1, domain 3 M1S54_18275 PF04997 RNA polymerase Rpb1, domain 1 M1S54_18275 PF04998 RNA polymerase Rpb1, domain 5 M1S54_18275 PF00623 RNA polymerase Rpb1, domain 2 M1S54_18275 PF05000 RNA polymerase Rpb1, domain 4 M1S54_18280 PF04563 RNA polymerase beta subunit M1S54_18280 PF04561 RNA polymerase Rpb2, domain 2 M1S54_18280 PF04565 RNA polymerase Rpb2, domain 3 M1S54_18280 PF10385 RNA polymerase beta subunit external 1 domain M1S54_18280 PF00562 RNA polymerase Rpb2, domain 6 M1S54_18280 PF04560 RNA polymerase Rpb2, domain 7 M1S54_18285 PF00542 Ribosomal protein L7/L12 C-terminal domain M1S54_18285 PF16320 Ribosomal protein L7/L12 dimerisation domain M1S54_18290 PF00466 Ribosomal protein L10 M1S54_18295 PF00687 Ribosomal protein L1p/L10e family M1S54_18300 PF00298 Ribosomal protein L11, RNA binding domain M1S54_18300 PF03946 Ribosomal protein L11, N-terminal domain M1S54_18305 PF00467 KOW motif M1S54_18305 PF02357 Transcription termination factor nusG M1S54_18310 PF00584 SecE/Sec61-gamma subunits of protein translocation complex M1S54_18320 PF00009 Elongation factor Tu GTP binding domain M1S54_18320 PF03144 Elongation factor Tu domain 2 M1S54_18320 PF03143 Elongation factor Tu C-terminal domain M1S54_18345 PF04715 Anthranilate synthase component I, N terminal region M1S54_18345 PF00425 chorismate binding enzyme M1S54_18350 PF13419 Haloacid dehalogenase-like hydrolase M1S54_18355 PF12401 Protein of unknown function (DUF2662) M1S54_18355 PF00498 FHA domain M1S54_18360 PF03958 Bacterial type II/III secretion system short domain M1S54_18360 PF00263 Bacterial type II and III secretion system protein M1S54_18375 PF00816 H-NS histone family M1S54_18400 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain M1S54_18400 PF03900 Porphobilinogen deaminase, C-terminal domain M1S54_18405 PF04397 LytTr DNA-binding domain M1S54_18405 PF00072 Response regulator receiver domain M1S54_18410 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M1S54_18410 PF06580 Histidine kinase M1S54_18410 PF07694 5TMR of 5TMR-LYT M1S54_18415 PF00206 Lyase M1S54_18415 PF14698 Argininosuccinate lyase C-terminal M1S54_18420 PF04362 Bacterial Fe(2+) trafficking M1S54_18425 PF01895 PhoU domain M1S54_18430 PF02321 Outer membrane efflux protein M1S54_18435 PF00892 EamA-like transporter family M1S54_18450 PF01964 Radical SAM ThiC family M1S54_18450 PF13667 ThiC-associated domain M1S54_18455 PF00293 NUDIX domain M1S54_18460 PF00149 Calcineurin-like phosphoesterase M1S54_18465 PF01258 Prokaryotic dksA/traR C4-type zinc finger M1S54_18470 PF00749 tRNA synthetases class I (E and Q), catalytic domain M1S54_18475 PF01098 Cell cycle protein M1S54_18480 PF02875 Mur ligase family, glutamate ligase domain M1S54_18480 PF08245 Mur ligase middle domain M1S54_18490 PF07664 Ferrous iron transport protein B C terminus M1S54_18490 PF02421 Ferrous iron transport protein B M1S54_18490 PF07670 Nucleoside recognition M1S54_18500 PF02899 Phage integrase, N-terminal SAM-like domain M1S54_18500 PF00589 Phage integrase family M1S54_18505 PF10411 Disulfide bond isomerase protein N-terminus M1S54_18505 PF13098 Thioredoxin-like domain M1S54_18510 PF00742 Homoserine dehydrogenase M1S54_18510 PF03447 Homoserine dehydrogenase, NAD binding domain M1S54_18510 PF01842 ACT domain M1S54_18515 PF00291 Pyridoxal-phosphate dependent enzyme M1S54_18520 PF00768 D-alanyl-D-alanine carboxypeptidase M1S54_18525 PF00196 Bacterial regulatory proteins, luxR family M1S54_18525 PF00072 Response regulator receiver domain M1S54_18530 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M1S54_18530 PF00512 His Kinase A (phospho-acceptor) domain M1S54_18540 PF00595 PDZ domain M1S54_18540 PF03572 Peptidase family S41 M1S54_18545 PF06415 BPG-independent PGAM N-terminus (iPGM_N) M1S54_18545 PF01676 Metalloenzyme superfamily M1S54_18550 PF03739 Lipopolysaccharide export system permease LptF/LptG M1S54_18560 PF00883 Cytosol aminopeptidase family, catalytic domain M1S54_18560 PF02789 Cytosol aminopeptidase family, N-terminal domain M1S54_18580 PF00677 Lumazine binding domain M1S54_18590 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region M1S54_18590 PF01872 RibD C-terminal domain M1S54_18595 PF03477 ATP cone domain M1S54_18600 PF00909 Ammonium Transporter Family M1S54_18605 PF00543 Nitrogen regulatory protein P-II M1S54_18625 PF01636 Phosphotransferase enzyme family M1S54_18630 PF04655 Aminoglycoside/hydroxyurea antibiotic resistance kinase M1S54_18650 PF02909 Tetracyclin repressor-like, C-terminal domain M1S54_18650 PF00440 Bacterial regulatory proteins, tetR family M1S54_18655 PF07690 Major Facilitator Superfamily M1S54_18665 PF01740 STAS domain M1S54_18665 PF00916 Sulfate permease family M1S54_18670 PF00582 Universal stress protein family M1S54_18690 PF00665 Integrase core domain M1S54_18700 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain M1S54_18700 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III M1S54_18700 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II M1S54_18700 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I M1S54_18705 PF00809 Pterin binding enzyme M1S54_18720 PF00665 Integrase core domain M1S54_18745 PF02899 Phage integrase, N-terminal SAM-like domain M1S54_18745 PF00589 Phage integrase family M1S54_18775 PF00916 Sulfate permease family M1S54_18775 PF01740 STAS domain M1S54_18780 PF00582 Universal stress protein family M1S54_18800 PF00665 Integrase core domain M1S54_18815 PF00392 Bacterial regulatory proteins, gntR family M1S54_18815 PF00155 Aminotransferase class I and II M1S54_18825 PF00701 Dihydrodipicolinate synthetase family M1S54_18840 PF03573 outer membrane porin, OprD family M1S54_18845 PF00719 Inorganic pyrophosphatase M1S54_18860 PF00501 AMP-binding enzyme M1S54_18860 PF13193 AMP-binding enzyme C-terminal domain M1S54_18865 PF03989 DNA gyrase C-terminal domain, beta-propeller M1S54_18865 PF00521 DNA gyrase/topoisomerase IV, subunit A M1S54_18870 PF07690 Major Facilitator Superfamily M1S54_18875 PF03458 UPF0126 domain M1S54_18880 PF02810 SEC-C motif M1S54_18885 PF03471 Transporter associated domain M1S54_18885 PF03741 Integral membrane protein TerC family M1S54_18890 PF03641 Possible lysine decarboxylase M1S54_18895 PF07690 Major Facilitator Superfamily M1S54_18905 PF00817 impB/mucB/samB family M1S54_18905 PF11799 impB/mucB/samB family C-terminal domain M1S54_18905 PF11798 IMS family HHH motif M1S54_18925 PF04055 Radical SAM superfamily M1S54_18925 PF08497 Radical SAM N-terminal M1S54_18925 PF11842 Domain of unknown function (DUF3362) M1S54_18945 PF03358 NADPH-dependent FMN reductase M1S54_18955 PF00291 Pyridoxal-phosphate dependent enzyme M1S54_19015 PF01327 Polypeptide deformylase M1S54_19025 PF02481 DNA recombination-mediator protein A M1S54_19025 PF17782 DprA winged helix domain M1S54_19030 PF01300 Telomere recombination M1S54_19035 PF00892 EamA-like transporter family M1S54_19040 PF00440 Bacterial regulatory proteins, tetR family M1S54_19045 PF07690 Major Facilitator Superfamily M1S54_19055 PF00255 Glutathione peroxidase M1S54_19065 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain M1S54_19070 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain M1S54_19070 PF02874 ATP synthase alpha/beta family, beta-barrel domain M1S54_19075 PF00231 ATP synthase M1S54_19080 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain M1S54_19080 PF00306 ATP synthase alpha/beta chain, C terminal domain M1S54_19080 PF02874 ATP synthase alpha/beta family, beta-barrel domain M1S54_19085 PF00213 ATP synthase delta (OSCP) subunit M1S54_19090 PF00430 ATP synthase B/B' CF(0) M1S54_19095 PF00137 ATP synthase subunit C M1S54_19100 PF00119 ATP synthase A chain M1S54_19120 PF00005 ABC transporter M1S54_19125 PF00950 ABC 3 transport family M1S54_19130 PF01810 LysE type translocator M1S54_19135 PF04261 Dyp-type peroxidase family M1S54_19145 PF00390 Malic enzyme, N-terminal domain M1S54_19145 PF03949 Malic enzyme, NAD binding domain M1S54_19150 PF03485 Arginyl tRNA synthetase N terminal domain M1S54_19150 PF05746 DALR anticodon binding domain M1S54_19150 PF00750 tRNA synthetases class I (R) M1S54_19170 PF02678 Pirin M1S54_19170 PF05726 Pirin C-terminal cupin domain M1S54_19180 PF03551 Transcriptional regulator PadR-like family M1S54_19185 PF13427 Domain of unknown function (DUF4111) M1S54_19185 PF01909 Nucleotidyltransferase domain M1S54_19190 PF00117 Glutamine amidotransferase class-I M1S54_19190 PF00958 GMP synthase C terminal domain M1S54_19190 PF02540 NAD synthase M1S54_19195 PF04286 Protein of unknown function (DUF445) M1S54_19200 PF07681 DoxX M1S54_19205 PF09335 SNARE associated Golgi protein M1S54_19220 PF13614 AAA domain M1S54_19230 PF01722 BolA-like protein M1S54_19245 PF01648 4'-phosphopantetheinyl transferase superfamily M1S54_19250 PF12697 Alpha/beta hydrolase family M1S54_19270 PF00975 Thioesterase domain M1S54_19270 PF14765 Polyketide synthase dehydratase M1S54_19270 PF00550 Phosphopantetheine attachment site M1S54_19270 PF08242 Methyltransferase domain M1S54_19270 PF02801 Beta-ketoacyl synthase, C-terminal domain M1S54_19270 PF00109 Beta-ketoacyl synthase, N-terminal domain M1S54_19270 PF16197 Ketoacyl-synthetase C-terminal extension M1S54_19275 PF02771 Acyl-CoA dehydrogenase, N-terminal domain M1S54_19275 PF02770 Acyl-CoA dehydrogenase, middle domain M1S54_19275 PF00441 Acyl-CoA dehydrogenase, C-terminal domain M1S54_19280 PF00501 AMP-binding enzyme M1S54_19285 PF00196 Bacterial regulatory proteins, luxR family M1S54_19285 PF03472 Autoinducer binding domain M1S54_19295 PF00765 Autoinducer synthase M1S54_19300 PF07690 Major Facilitator Superfamily M1S54_19300 PF00083 Sugar (and other) transporter M1S54_19305 PF00378 Enoyl-CoA hydratase/isomerase M1S54_19310 PF00378 Enoyl-CoA hydratase/isomerase M1S54_19315 PF00441 Acyl-CoA dehydrogenase, C-terminal domain M1S54_19315 PF02771 Acyl-CoA dehydrogenase, N-terminal domain M1S54_19315 PF02770 Acyl-CoA dehydrogenase, middle domain M1S54_19320 PF13193 AMP-binding enzyme C-terminal domain M1S54_19320 PF00501 AMP-binding enzyme M1S54_19325 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase M1S54_19325 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase M1S54_19330 PF00171 Aldehyde dehydrogenase family M1S54_19340 PF00324 Amino acid permease M1S54_19345 PF00324 Amino acid permease M1S54_19350 PF01042 Endoribonuclease L-PSP M1S54_19355 PF00842 Alanine racemase, C-terminal domain M1S54_19355 PF01168 Alanine racemase, N-terminal domain M1S54_19360 PF01266 FAD dependent oxidoreductase M1S54_19365 PF01037 Lrp/AsnC ligand binding domain M1S54_19375 PF07715 TonB-dependent Receptor Plug Domain M1S54_19375 PF00593 TonB dependent receptor M1S54_19390 PF00849 RNA pseudouridylate synthase M1S54_19405 PF08361 MAATS-type transcriptional repressor, C-terminal region M1S54_19405 PF00440 Bacterial regulatory proteins, tetR family M1S54_19415 PF00109 Beta-ketoacyl synthase, N-terminal domain M1S54_19415 PF02801 Beta-ketoacyl synthase, C-terminal domain M1S54_19450 PF00694 Aconitase C-terminal domain M1S54_19450 PF00330 Aconitase family (aconitate hydratase) M1S54_19455 PF00285 Citrate synthase, C-terminal domain M1S54_19465 PF00392 Bacterial regulatory proteins, gntR family M1S54_19465 PF07729 FCD domain M1S54_19475 PF00155 Aminotransferase class I and II M1S54_19480 PF01565 FAD binding domain M1S54_19480 PF09330 D-lactate dehydrogenase, membrane binding M1S54_19485 PF01070 FMN-dependent dehydrogenase M1S54_19490 PF07729 FCD domain M1S54_19490 PF00392 Bacterial regulatory proteins, gntR family M1S54_19495 PF02652 L-lactate permease M1S54_19500 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I M1S54_19500 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II M1S54_19500 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III M1S54_19500 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain M1S54_19505 PF16363 GDP-mannose 4,6 dehydratase M1S54_19510 PF00342 Phosphoglucose isomerase M1S54_19515 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain M1S54_19515 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain M1S54_19515 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain M1S54_19520 PF00483 Nucleotidyl transferase M1S54_19525 PF02397 Bacterial sugar transferase M1S54_19545 PF07922 Glycosyltransferase family 52 M1S54_19550 PF01943 Polysaccharide biosynthesis protein M1S54_19555 PF02348 Cytidylyltransferase M1S54_19560 PF00483 Nucleotidyl transferase M1S54_19570 PF08666 SAF domain M1S54_19570 PF03102 NeuB family M1S54_19575 PF02350 UDP-N-acetylglucosamine 2-epimerase M1S54_19580 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family M1S54_19585 PF02719 Polysaccharide biosynthesis protein M1S54_19590 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain M1S54_19590 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain M1S54_19590 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain M1S54_19595 PF18412 Outer-membrane lipoprotein Wza C-terminal domain M1S54_19595 PF02563 Polysaccharide biosynthesis/export protein M1S54_19595 PF10531 SLBB domain M1S54_19600 PF01451 Low molecular weight phosphotyrosine protein phosphatase M1S54_19605 PF02706 Chain length determinant protein M1S54_19605 PF13807 G-rich domain on putative tyrosine kinase M1S54_19605 PF13614 AAA domain M1S54_19610 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase M1S54_19610 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase M1S54_19615 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase M1S54_19615 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase M1S54_19620 PF03023 Lipid II flippase MurJ M1S54_19625 PF01510 N-acetylmuramoyl-L-alanine amidase M1S54_19630 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain M1S54_19630 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain M1S54_19640 PF05506 Domain of unknown function (DUF756) M1S54_19640 PF04185 Phosphoesterase family M1S54_19650 PF01138 3' exoribonuclease family, domain 1 M1S54_19650 PF03725 3' exoribonuclease family, domain 2 M1S54_19655 PF00487 Fatty acid desaturase M1S54_19660 PF00175 Oxidoreductase NAD-binding domain M1S54_19665 PF00440 Bacterial regulatory proteins, tetR family M1S54_19670 PF00440 Bacterial regulatory proteins, tetR family M1S54_19670 PF08360 QacR-like protein, C-terminal region M1S54_19675 PF01323 DSBA-like thioredoxin domain M1S54_19685 PF13419 Haloacid dehalogenase-like hydrolase M1S54_19690 PF00106 short chain dehydrogenase M1S54_19705 PF00583 Acetyltransferase (GNAT) family M1S54_19705 PF00696 Amino acid kinase family M1S54_19710 PF09084 NMT1/THI5 like M1S54_19715 PF09084 NMT1/THI5 like M1S54_19720 PF00296 Luciferase-like monooxygenase M1S54_19725 PF00528 Binding-protein-dependent transport system inner membrane component M1S54_19730 PF00005 ABC transporter M1S54_19735 PF00440 Bacterial regulatory proteins, tetR family M1S54_19735 PF08362 YcdC-like protein, C-terminal region M1S54_19740 PF01048 Phosphorylase superfamily M1S54_19750 PF01687 Riboflavin kinase M1S54_19750 PF06574 FAD synthetase M1S54_19755 PF06827 Zinc finger found in FPG and IleRS M1S54_19755 PF08264 Anticodon-binding domain of tRNA M1S54_19755 PF00133 tRNA synthetases class I (I, L, M and V) M1S54_19760 PF01252 Signal peptidase (SPase) II M1S54_19765 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase M1S54_19805 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD M1S54_19810 PF07859 alpha/beta hydrolase fold M1S54_19830 PF03466 LysR substrate binding domain M1S54_19830 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M1S54_19835 PF01025 GrpE M1S54_19840 PF00012 Hsp70 protein M1S54_19860 PF13406 Transglycosylase SLT domain M1S54_19865 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain M1S54_19865 PF02222 ATP-grasp domain M1S54_19870 PF00731 AIR carboxylase M1S54_19880 PF08245 Mur ligase middle domain M1S54_19880 PF01225 Mur ligase family, catalytic domain M1S54_19880 PF02875 Mur ligase family, glutamate ligase domain M1S54_19890 PF01569 PAP2 superfamily M1S54_19895 PF03741 Integral membrane protein TerC family M1S54_19905 PF03738 Glutathionylspermidine synthase preATP-grasp M1S54_19910 PF00355 Rieske [2Fe-2S] domain M1S54_19915 PF01979 Amidohydrolase family M1S54_19920 PF00156 Phosphoribosyl transferase domain M1S54_19930 PF10411 Disulfide bond isomerase protein N-terminus M1S54_19930 PF13098 Thioredoxin-like domain M1S54_19935 PF01545 Cation efflux family M1S54_19935 PF16916 Dimerisation domain of Zinc Transporter M1S54_19940 PF02583 Metal-sensitive transcriptional repressor M1S54_19945 PF01926 50S ribosome-binding GTPase M1S54_19945 PF12631 MnmE helical domain M1S54_19945 PF10396 GTP-binding protein TrmE N-terminus M1S54_19950 PF02096 60Kd inner membrane protein M1S54_19950 PF14849 YidC periplasmic domain M1S54_19955 PF01809 Putative membrane protein insertion efficiency factor M1S54_19960 PF00825 Ribonuclease P M1S54_19965 PF00468 Ribosomal protein L34 M1S54_19970 PF13614 AAA domain M1S54_19975 PF17762 HTH domain found in ParB protein M1S54_19975 PF02195 ParB-like nuclease domain M1S54_19990 PF05816 Toxic anion resistance protein (TelA) M1S54_20085 PF00226 DnaJ domain M1S54_20085 PF01556 DnaJ C terminal domain M1S54_20085 PF00684 DnaJ central domain M1S54_20120 PF07057 DNA helicase TraI M1S54_20120 PF18272 single-stranded DNA binding TraI N-terminal subdomain M1S54_20120 PF18340 DNA relaxase TraI 2B/2B-like domain M1S54_20120 PF08751 TrwC relaxase M1S54_20155 PF02796 Helix-turn-helix domain of resolvase M1S54_20155 PF00239 Resolvase, N terminal domain M1S54_20170 PF01464 Transglycosylase SLT domain M1S54_20205 PF10411 Disulfide bond isomerase protein N-terminus M1S54_20205 PF13098 Thioredoxin-like domain M1S54_20240 PF06834 TraU protein M1S54_20250 PF06986 Type-1V conjugative transfer system mating pair stabilisation M1S54_20265 PF06122 Conjugative relaxosome accessory transposon protein M1S54_20285 PF13438 Domain of unknown function (DUF4113) M1S54_20285 PF11799 impB/mucB/samB family C-terminal domain M1S54_20285 PF00817 impB/mucB/samB family M1S54_20375 PF00565 Staphylococcal nuclease homologue M1S54_20380 PF00816 H-NS histone family