locus-tag class description M1S52_00005 PF00308 Bacterial dnaA protein M1S52_00005 PF08299 Bacterial dnaA protein helix-turn-helix M1S52_00005 PF11638 DnaA N-terminal domain M1S52_00010 PF00712 DNA polymerase III beta subunit, N-terminal domain M1S52_00010 PF02767 DNA polymerase III beta subunit, central domain M1S52_00010 PF02768 DNA polymerase III beta subunit, C-terminal domain M1S52_00015 PF02463 RecF/RecN/SMC N terminal domain M1S52_00020 PF00204 DNA gyrase B M1S52_00020 PF00986 DNA gyrase B subunit, carboxyl terminus M1S52_00020 PF18053 DNA gyrase B subunit insert domain M1S52_00020 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M1S52_00020 PF01751 Toprim domain M1S52_00030 PF09335 SNARE associated Golgi protein M1S52_00035 PF12848 ABC transporter M1S52_00035 PF00005 ABC transporter M1S52_00055 PF01521 Iron-sulphur cluster biosynthesis M1S52_00060 PF00561 alpha/beta hydrolase fold M1S52_00065 PF03702 Anhydro-N-acetylmuramic acid kinase M1S52_00070 PF00579 tRNA synthetases class I (W and Y) M1S52_00130 PF01189 16S rRNA methyltransferase RsmB/F M1S52_00130 PF01029 NusB family M1S52_00135 PF02911 Formyl transferase, C-terminal domain M1S52_00135 PF00551 Formyl transferase M1S52_00140 PF00920 Dehydratase family M1S52_00155 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M1S52_00155 PF03466 LysR substrate binding domain M1S52_00160 PF00860 Permease family M1S52_00165 PF00311 Phosphoenolpyruvate carboxylase M1S52_00170 PF08361 MAATS-type transcriptional repressor, C-terminal region M1S52_00170 PF00440 Bacterial regulatory proteins, tetR family M1S52_00175 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion M1S52_00180 PF00873 AcrB/AcrD/AcrF family M1S52_00190 PF00684 DnaJ central domain M1S52_00190 PF00226 DnaJ domain M1S52_00190 PF01556 DnaJ C terminal domain M1S52_00200 PF01113 Dihydrodipicolinate reductase, N-terminus M1S52_00200 PF05173 Dihydrodipicolinate reductase, C-terminus M1S52_00210 PF07690 Major Facilitator Superfamily M1S52_00215 PF00248 Aldo/keto reductase family M1S52_00220 PF03466 LysR substrate binding domain M1S52_00220 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M1S52_00235 PF00392 Bacterial regulatory proteins, gntR family M1S52_00235 PF00155 Aminotransferase class I and II M1S52_00240 PF00107 Zinc-binding dehydrogenase M1S52_00240 PF08240 Alcohol dehydrogenase GroES-like domain M1S52_00245 PF03352 Methyladenine glycosylase M1S52_00260 PF10576 Iron-sulfur binding domain of endonuclease III M1S52_00260 PF00633 Helix-hairpin-helix motif M1S52_00260 PF00730 HhH-GPD superfamily base excision DNA repair protein M1S52_00260 PF14815 NUDIX domain M1S52_00275 PF07043 Protein of unknown function (DUF1328) M1S52_00280 PF03692 Putative zinc- or iron-chelating domain M1S52_00285 PF07995 Glucose / Sorbosone dehydrogenase M1S52_00290 PF00004 ATPase family associated with various cellular activities (AAA) M1S52_00290 PF16193 AAA C-terminal domain M1S52_00290 PF12002 MgsA AAA+ ATPase C terminal M1S52_00295 PF01226 Formate/nitrite transporter M1S52_00305 PF01259 SAICAR synthetase M1S52_00315 PF00701 Dihydrodipicolinate synthetase family M1S52_00320 PF00857 Isochorismatase family M1S52_00325 PF01758 Sodium Bile acid symporter family M1S52_00330 PF01554 MatE M1S52_00335 PF04463 Protein of unknown function (DUF523) M1S52_00340 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily M1S52_00350 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily M1S52_00355 PF14497 Glutathione S-transferase, C-terminal domain M1S52_00355 PF02798 Glutathione S-transferase, N-terminal domain M1S52_00365 PF00324 Amino acid permease M1S52_00375 PF07683 Cobalamin synthesis protein cobW C-terminal domain M1S52_00375 PF02492 CobW/HypB/UreG, nucleotide-binding domain M1S52_00385 PF07702 UTRA domain M1S52_00385 PF00392 Bacterial regulatory proteins, gntR family M1S52_00390 PF05962 HutD M1S52_00395 PF01175 Urocanase Rossmann-like domain M1S52_00395 PF17392 Urocanase C-terminal domain M1S52_00395 PF17391 Urocanase N-terminal domain M1S52_00400 PF00221 Aromatic amino acid lyase M1S52_00405 PF00324 Amino acid permease M1S52_00410 PF01979 Amidohydrolase family M1S52_00415 PF00491 Arginase family M1S52_00430 PF01177 Asp/Glu/Hydantoin racemase M1S52_00435 PF01380 SIS domain M1S52_00440 PF14602 Hexapeptide repeat of succinyl-transferase M1S52_00440 PF12804 MobA-like NTP transferase domain M1S52_00440 PF00132 Bacterial transferase hexapeptide (six repeats) M1S52_00445 PF04608 Phosphatidylglycerophosphatase A M1S52_00450 PF00586 AIR synthase related protein, N-terminal domain M1S52_00450 PF02769 AIR synthase related protein, C-terminal domain M1S52_00455 PF01029 NusB family M1S52_00460 PF00885 6,7-dimethyl-8-ribityllumazine synthase M1S52_00465 PF00925 GTP cyclohydrolase II M1S52_00465 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase M1S52_00490 PF02580 D-Tyr-tRNA(Tyr) deacylase M1S52_00495 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain M1S52_00495 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family M1S52_00500 PF00581 Rhodanese-like domain M1S52_00505 PF02666 Phosphatidylserine decarboxylase M1S52_00510 PF03069 Acetamidase/Formamidase family M1S52_00530 PF00989 PAS fold M1S52_00530 PF11808 Phosphate regulon sensor protein PhoR M1S52_00530 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M1S52_00530 PF00512 His Kinase A (phospho-acceptor) domain M1S52_00535 PF00486 Transcriptional regulatory protein, C terminal M1S52_00535 PF00072 Response regulator receiver domain M1S52_00545 PF00106 short chain dehydrogenase M1S52_00550 PF01554 MatE M1S52_00555 PF00155 Aminotransferase class I and II M1S52_00560 PF04286 Protein of unknown function (DUF445) M1S52_00575 PF04262 Glutamate-cysteine ligase M1S52_00580 PF02600 Disulfide bond formation protein DsbB M1S52_00585 PF10106 Uncharacterized protein conserved in bacteria (DUF2345) M1S52_00585 PF04717 Type VI secretion system, phage-baseplate injector M1S52_00585 PF13296 Putative type VI secretion system Rhs element Vgr M1S52_00590 PF00877 NlpC/P60 family M1S52_00590 PF01476 LysM domain M1S52_00605 PF05728 Uncharacterised protein family (UPF0227) M1S52_00610 PF00204 DNA gyrase B M1S52_00610 PF01751 Toprim domain M1S52_00610 PF00986 DNA gyrase B subunit, carboxyl terminus M1S52_00610 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M1S52_00615 PF00106 short chain dehydrogenase M1S52_00620 PF04115 Ureidoglycolate lyase M1S52_00625 PF03561 Allantoicase repeat M1S52_00630 PF01494 FAD binding domain M1S52_00640 PF00860 Permease family M1S52_00645 PF00576 HIUase/Transthyretin family M1S52_00675 PF11412 Disulphide bond corrector protein DsbC M1S52_00675 PF02683 Cytochrome C biogenesis protein transmembrane region M1S52_00680 PF00990 Diguanylate cyclase, GGDEF domain M1S52_00680 PF07694 5TMR of 5TMR-LYT M1S52_00685 PF07859 alpha/beta hydrolase fold M1S52_00695 PF03960 ArsC family M1S52_00700 PF03372 Endonuclease/Exonuclease/phosphatase family M1S52_00705 PF00156 Phosphoribosyl transferase domain M1S52_00720 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain M1S52_00720 PF02951 Prokaryotic glutathione synthetase, N-terminal domain M1S52_00725 PF03033 Glycosyltransferase family 28 N-terminal domain M1S52_00725 PF04101 Glycosyltransferase family 28 C-terminal domain M1S52_00730 PF08245 Mur ligase middle domain M1S52_00730 PF02875 Mur ligase family, glutamate ligase domain M1S52_00730 PF01225 Mur ligase family, catalytic domain M1S52_00735 PF01820 D-ala D-ala ligase N-terminus M1S52_00735 PF07478 D-ala D-ala ligase C-terminus M1S52_00740 PF03799 Cell division protein FtsQ M1S52_00740 PF08478 POTRA domain, FtsQ-type M1S52_00745 PF02491 SHS2 domain inserted in FTSA M1S52_00750 PF12327 FtsZ family, C-terminal domain M1S52_00750 PF00091 Tubulin/FtsZ family, GTPase domain M1S52_00755 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase M1S52_00765 PF01551 Peptidase family M23 M1S52_00770 PF00456 Transketolase, thiamine diphosphate binding domain M1S52_00770 PF17831 Pyruvate dehydrogenase E1 component middle domain M1S52_00775 PF00364 Biotin-requiring enzyme M1S52_00775 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) M1S52_00775 PF02817 e3 binding domain M1S52_00785 PF01169 Uncharacterized protein family UPF0016 M1S52_00790 PF00593 TonB dependent receptor M1S52_00790 PF07715 TonB-dependent Receptor Plug Domain M1S52_00795 PF01613 Flavin reductase like domain M1S52_00795 PF00258 Flavodoxin M1S52_00800 PF03692 Putative zinc- or iron-chelating domain M1S52_00805 PF00478 IMP dehydrogenase / GMP reductase domain M1S52_00805 PF00571 CBS domain M1S52_00810 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain M1S52_00810 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III M1S52_00810 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II M1S52_00810 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I M1S52_00815 PF01243 Pyridoxamine 5'-phosphate oxidase M1S52_00815 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region M1S52_00820 PF02272 DHHA1 domain M1S52_00820 PF01368 DHH family M1S52_00820 PF17768 RecJ OB domain M1S52_00840 PF00724 NADH:flavin oxidoreductase / NADH oxidase family M1S52_00845 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) M1S52_00850 PF04452 RNA methyltransferase M1S52_00855 PF00924 Mechanosensitive ion channel M1S52_00875 PF01037 Lrp/AsnC ligand binding domain M1S52_00880 PF00872 Transposase, Mutator family M1S52_00885 PF00296 Luciferase-like monooxygenase M1S52_00890 PF03358 NADPH-dependent FMN reductase M1S52_00895 PF00072 Response regulator receiver domain M1S52_00895 PF00196 Bacterial regulatory proteins, luxR family M1S52_00905 PF01627 Hpt domain M1S52_00905 PF00072 Response regulator receiver domain M1S52_00905 PF00672 HAMP domain M1S52_00905 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M1S52_00905 PF00512 His Kinase A (phospho-acceptor) domain M1S52_00910 PF04341 Protein of unknown function, DUF485 M1S52_00915 PF00474 Sodium:solute symporter family M1S52_00925 PF02028 BCCT, betaine/carnitine/choline family transporter M1S52_00935 PF00990 Diguanylate cyclase, GGDEF domain M1S52_00945 PF00005 ABC transporter M1S52_00945 PF17755 UvrA DNA-binding domain M1S52_00945 PF17760 UvrA interaction domain M1S52_00950 PF00440 Bacterial regulatory proteins, tetR family M1S52_00950 PF16925 Tetracyclin repressor-like, C-terminal domain M1S52_00955 PF00107 Zinc-binding dehydrogenase M1S52_00955 PF08240 Alcohol dehydrogenase GroES-like domain M1S52_00965 PF06942 GlpM protein M1S52_00970 PF08543 Phosphomethylpyrimidine kinase M1S52_00970 PF02581 Thiamine monophosphate synthase M1S52_00970 PF03070 TENA/THI-4/PQQC family M1S52_00980 PF07690 Major Facilitator Superfamily M1S52_00985 PF00436 Single-strand binding protein family M1S52_00995 PF03591 AzlC protein M1S52_01005 PF00324 Amino acid permease M1S52_01010 PF00155 Aminotransferase class I and II M1S52_01010 PF00392 Bacterial regulatory proteins, gntR family M1S52_01015 PF00202 Aminotransferase class-III M1S52_01020 PF00171 Aldehyde dehydrogenase family M1S52_01025 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M1S52_01030 PF00857 Isochorismatase family M1S52_01035 PF05726 Pirin C-terminal cupin domain M1S52_01035 PF02678 Pirin M1S52_01040 PF01593 Flavin containing amine oxidoreductase M1S52_01060 PF07690 Major Facilitator Superfamily M1S52_01065 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M1S52_01065 PF03466 LysR substrate binding domain M1S52_01085 PF00248 Aldo/keto reductase family M1S52_01090 PF12833 Helix-turn-helix domain M1S52_01090 PF02311 AraC-like ligand binding domain M1S52_01120 PF01638 HxlR-like helix-turn-helix M1S52_01125 PF02525 Flavodoxin-like fold M1S52_01145 PF02705 K+ potassium transporter M1S52_01170 PF00230 Major intrinsic protein M1S52_01185 PF00977 Histidine biosynthesis protein M1S52_01190 PF01636 Phosphotransferase enzyme family M1S52_01205 PF03992 Antibiotic biosynthesis monooxygenase M1S52_01220 PF00977 Histidine biosynthesis protein M1S52_01235 PF00117 Glutamine amidotransferase class-I M1S52_01240 PF00475 Imidazoleglycerol-phosphate dehydratase M1S52_01260 PF00583 Acetyltransferase (GNAT) family M1S52_01265 PF13336 Acetyl-CoA hydrolase/transferase C-terminal domain M1S52_01265 PF02550 Acetyl-CoA hydrolase/transferase N-terminal domain M1S52_01275 PF00512 His Kinase A (phospho-acceptor) domain M1S52_01275 PF00672 HAMP domain M1S52_01275 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M1S52_01280 PF00072 Response regulator receiver domain M1S52_01280 PF00486 Transcriptional regulatory protein, C terminal M1S52_01285 PF16921 Tex protein YqgF-like domain M1S52_01285 PF09371 Tex-like protein N-terminal domain M1S52_01285 PF00575 S1 RNA binding domain M1S52_01285 PF17674 HHH domain M1S52_01290 PF01740 STAS domain M1S52_01290 PF00916 Sulfate permease family M1S52_01295 PF00106 short chain dehydrogenase M1S52_01300 PF01053 Cys/Met metabolism PLP-dependent enzyme M1S52_01305 PF12848 ABC transporter M1S52_01305 PF00005 ABC transporter M1S52_01350 PF00529 HlyD membrane-fusion protein of T1SS M1S52_01350 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion M1S52_01355 PF00873 AcrB/AcrD/AcrF family M1S52_01360 PF01545 Cation efflux family M1S52_01425 PF00872 Transposase, Mutator family M1S52_01465 PF08463 EcoEI R protein C-terminal M1S52_01465 PF00271 Helicase conserved C-terminal domain M1S52_01465 PF13588 Type I restriction enzyme R protein N terminus (HSDR_N) M1S52_01465 PF04851 Type III restriction enzyme, res subunit M1S52_01490 PF00589 Phage integrase family M1S52_01490 PF13356 Arm DNA-binding domain M1S52_01510 PF00324 Amino acid permease M1S52_01525 PF00749 tRNA synthetases class I (E and Q), catalytic domain M1S52_01540 PF01795 MraW methylase family M1S52_01550 PF00905 Penicillin binding protein transpeptidase domain M1S52_01550 PF03717 Penicillin-binding Protein dimerisation domain M1S52_01555 PF01225 Mur ligase family, catalytic domain M1S52_01555 PF02875 Mur ligase family, glutamate ligase domain M1S52_01555 PF08245 Mur ligase middle domain M1S52_01560 PF08245 Mur ligase middle domain M1S52_01560 PF02875 Mur ligase family, glutamate ligase domain M1S52_01560 PF01225 Mur ligase family, catalytic domain M1S52_01565 PF00953 Glycosyl transferase family 4 M1S52_01575 PF13847 Methyltransferase domain M1S52_01580 PF17092 Penicillin-binding protein OB-like domain M1S52_01580 PF00912 Transglycosylase M1S52_01580 PF00905 Penicillin binding protein transpeptidase domain M1S52_01585 PF11104 Type IV pilus assembly protein PilM; M1S52_01590 PF05137 Fimbrial assembly protein (PilN) M1S52_01595 PF04350 Pilus assembly protein, PilO M1S52_01605 PF11741 AMIN domain M1S52_01605 PF07660 Secretin and TonB N terminus short domain M1S52_01605 PF00263 Bacterial type II and III secretion system protein M1S52_01605 PF03958 Bacterial type II/III secretion system short domain M1S52_01610 PF01202 Shikimate kinase M1S52_01615 PF01761 3-dehydroquinate synthase M1S52_01625 PF00310 Glutamine amidotransferases class-II M1S52_01625 PF04898 Glutamate synthase central domain M1S52_01625 PF01645 Conserved region in glutamate synthase M1S52_01625 PF01493 GXGXG motif M1S52_01630 PF07992 Pyridine nucleotide-disulphide oxidoreductase M1S52_01630 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster M1S52_01640 PF04011 LemA family M1S52_01645 PF04536 TPM domain M1S52_01655 PF07963 Prokaryotic N-terminal methylation motif M1S52_01655 PF00114 Pilin (bacterial filament) M1S52_01665 PF15864 Protein glycosylation ligase M1S52_01665 PF04932 O-Antigen ligase M1S52_01665 PF11846 Virulence factor membrane-bound polymerase, C-terminal M1S52_01670 PF00210 Ferritin-like domain M1S52_01675 PF04324 BFD-like [2Fe-2S] binding domain M1S52_01680 PF01042 Endoribonuclease L-PSP M1S52_01685 PF13291 ACT domain M1S52_01685 PF04607 Region found in RelA / SpoT proteins M1S52_01685 PF02824 TGS domain M1S52_01695 PF01192 RNA polymerase Rpb6 M1S52_01700 PF00625 Guanylate kinase M1S52_01705 PF02401 LytB protein M1S52_01745 PF00886 Ribosomal protein S16 M1S52_01750 PF01782 RimM N-terminal domain M1S52_01750 PF05239 PRC-barrel domain M1S52_01760 PF01245 Ribosomal protein L19 M1S52_01765 PF00561 alpha/beta hydrolase fold M1S52_01770 PF03280 Proteobacterial lipase chaperone protein M1S52_01775 PF01509 TruB family pseudouridylate synthase (N terminal domain) M1S52_01775 PF16198 tRNA pseudouridylate synthase B C-terminal domain M1S52_01775 PF09157 Pseudouridine synthase II TruB, C-terminal M1S52_01780 PF01925 Sulfite exporter TauE/SafE M1S52_01790 PF00892 EamA-like transporter family M1S52_01795 PF00892 EamA-like transporter family M1S52_01800 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain M1S52_01800 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain M1S52_01805 PF02913 FAD linked oxidases, C-terminal domain M1S52_01805 PF01565 FAD binding domain M1S52_01815 PF03992 Antibiotic biosynthesis monooxygenase M1S52_01820 PF02525 Flavodoxin-like fold M1S52_01830 PF07690 Major Facilitator Superfamily M1S52_01835 PF12805 FUSC-like inner membrane protein yccS M1S52_01840 PF00080 Copper/zinc superoxide dismutase (SODC) M1S52_01845 PF01594 AI-2E family transporter M1S52_01850 PF13614 AAA domain M1S52_01880 PF00324 Amino acid permease M1S52_01885 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase M1S52_01885 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain M1S52_01890 PF00202 Aminotransferase class-III M1S52_01895 PF04958 Arginine N-succinyltransferase beta subunit M1S52_01900 PF00171 Aldehyde dehydrogenase family M1S52_01905 PF04996 Succinylarginine dihydrolase M1S52_01910 PF04952 Succinylglutamate desuccinylase / Aspartoacylase family M1S52_01925 PF05922 Peptidase inhibitor I9 M1S52_01925 PF00082 Subtilase family M1S52_01940 PF03466 LysR substrate binding domain M1S52_01940 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M1S52_01945 PF00892 EamA-like transporter family M1S52_01955 PF02092 Glycyl-tRNA synthetase beta subunit M1S52_01955 PF05746 DALR anticodon binding domain M1S52_01960 PF02091 Glycyl-tRNA synthetase alpha subunit M1S52_01985 PF00571 CBS domain M1S52_01990 PF04024 PspC domain M1S52_02000 PF12806 Acetyl-CoA dehydrogenase C-terminal like M1S52_02000 PF02771 Acyl-CoA dehydrogenase, N-terminal domain M1S52_02000 PF02770 Acyl-CoA dehydrogenase, middle domain M1S52_02000 PF00441 Acyl-CoA dehydrogenase, C-terminal domain M1S52_02010 PF08501 Shikimate dehydrogenase substrate binding domain M1S52_02010 PF01488 Shikimate / quinate 5-dehydrogenase M1S52_02010 PF18317 Shikimate 5'-dehydrogenase C-terminal domain M1S52_02015 PF01218 Coproporphyrinogen III oxidase M1S52_02020 PF00925 GTP cyclohydrolase II M1S52_02025 PF02779 Transketolase, pyrimidine binding domain M1S52_02025 PF02780 Transketolase, C-terminal domain M1S52_02025 PF13292 1-deoxy-D-xylulose-5-phosphate synthase M1S52_02030 PF00459 Inositol monophosphatase family M1S52_02035 PF12343 Cold shock protein DEAD box A M1S52_02035 PF00271 Helicase conserved C-terminal domain M1S52_02035 PF03880 DbpA RNA binding domain M1S52_02035 PF00270 DEAD/DEAH box helicase M1S52_02045 PF00005 ABC transporter M1S52_02050 PF02405 Permease MlaE M1S52_02060 PF05494 MlaC protein M1S52_02070 PF01544 CorA-like Mg2+ transporter protein M1S52_02075 PF03641 Possible lysine decarboxylase M1S52_02080 PF00293 NUDIX domain M1S52_02085 PF00156 Phosphoribosyl transferase domain M1S52_02090 PF00270 DEAD/DEAH box helicase M1S52_02090 PF17191 RecG wedge domain M1S52_02090 PF00271 Helicase conserved C-terminal domain M1S52_02105 PF01553 Acyltransferase M1S52_02115 PF00375 Sodium:dicarboxylate symporter family M1S52_02125 PF01926 50S ribosome-binding GTPase M1S52_02130 PF02082 Transcriptional regulator M1S52_02135 PF00970 Oxidoreductase FAD-binding domain M1S52_02135 PF00042 Globin M1S52_02135 PF00175 Oxidoreductase NAD-binding domain M1S52_02140 PF05872 Bacterial protein of unknown function (DUF853) M1S52_02145 PF01053 Cys/Met metabolism PLP-dependent enzyme M1S52_02150 PF00117 Glutamine amidotransferase class-I M1S52_02155 PF00338 Ribosomal protein S10p/S20e M1S52_02160 PF00297 Ribosomal protein L3 M1S52_02165 PF00573 Ribosomal protein L4/L1 family M1S52_02170 PF00276 Ribosomal protein L23 M1S52_02175 PF00181 Ribosomal Proteins L2, RNA binding domain M1S52_02175 PF03947 Ribosomal Proteins L2, C-terminal domain M1S52_02180 PF00203 Ribosomal protein S19 M1S52_02185 PF00237 Ribosomal protein L22p/L17e M1S52_02195 PF00252 Ribosomal protein L16p/L10e M1S52_02200 PF00831 Ribosomal L29 protein M1S52_02205 PF00366 Ribosomal protein S17 M1S52_02210 PF00238 Ribosomal protein L14p/L23e M1S52_02215 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 M1S52_02215 PF00467 KOW motif M1S52_02220 PF00673 ribosomal L5P family C-terminus M1S52_02220 PF00281 Ribosomal protein L5 M1S52_02225 PF00253 Ribosomal protein S14p/S29e M1S52_02230 PF00410 Ribosomal protein S8 M1S52_02235 PF00347 Ribosomal protein L6 M1S52_02240 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast M1S52_02245 PF00333 Ribosomal protein S5, N-terminal domain M1S52_02245 PF03719 Ribosomal protein S5, C-terminal domain M1S52_02250 PF00327 Ribosomal protein L30p/L7e M1S52_02255 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A M1S52_02260 PF00344 SecY translocase M1S52_02265 PF00444 Ribosomal protein L36 M1S52_02270 PF00416 Ribosomal protein S13/S18 M1S52_02275 PF00411 Ribosomal protein S11 M1S52_02280 PF00163 Ribosomal protein S4/S9 N-terminal domain M1S52_02280 PF01479 S4 domain M1S52_02285 PF01000 RNA polymerase Rpb3/RpoA insert domain M1S52_02285 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain M1S52_02285 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain M1S52_02290 PF01196 Ribosomal protein L17 M1S52_02295 PF00743 Flavin-binding monooxygenase-like M1S52_02300 PF02771 Acyl-CoA dehydrogenase, N-terminal domain M1S52_02300 PF02770 Acyl-CoA dehydrogenase, middle domain M1S52_02300 PF00441 Acyl-CoA dehydrogenase, C-terminal domain M1S52_02305 PF03937 Flavinator of succinate dehydrogenase M1S52_02335 PF09526 Probable metal-binding protein (DUF2387) M1S52_02340 PF01432 Peptidase family M3 M1S52_02345 PF17876 Cold shock domain M1S52_02345 PF08461 Ribonuclease R winged-helix domain M1S52_02345 PF08206 Ribonuclease B OB domain M1S52_02345 PF00773 RNB domain M1S52_02345 PF00575 S1 RNA binding domain M1S52_02390 PF01557 Fumarylacetoacetate (FAA) hydrolase family M1S52_02395 PF12833 Helix-turn-helix domain M1S52_02400 PF00892 EamA-like transporter family M1S52_02405 PF03631 Virulence factor BrkB M1S52_02410 PF03358 NADPH-dependent FMN reductase M1S52_02435 PF02130 Uncharacterized protein family UPF0054 M1S52_02440 PF02562 PhoH-like protein M1S52_02445 PF01938 TRAM domain M1S52_02445 PF04055 Radical SAM superfamily M1S52_02445 PF00919 Uncharacterized protein family UPF0004 M1S52_02450 PF01551 Peptidase family M23 M1S52_02450 PF10145 Phage-related minor tail protein M1S52_02450 PF01464 Transglycosylase SLT domain M1S52_02460 PF00056 lactate/malate dehydrogenase, NAD binding domain M1S52_02460 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain M1S52_02480 PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ M1S52_02485 PF01066 CDP-alcohol phosphatidyltransferase M1S52_02530 PF00441 Acyl-CoA dehydrogenase, C-terminal domain M1S52_02530 PF02770 Acyl-CoA dehydrogenase, middle domain M1S52_02530 PF02771 Acyl-CoA dehydrogenase, N-terminal domain M1S52_02535 PF17932 Tetracyclin repressor-like, C-terminal domain M1S52_02535 PF00440 Bacterial regulatory proteins, tetR family M1S52_02550 PF01039 Carboxyl transferase domain M1S52_02555 PF02771 Acyl-CoA dehydrogenase, N-terminal domain M1S52_02555 PF00441 Acyl-CoA dehydrogenase, C-terminal domain M1S52_02555 PF02770 Acyl-CoA dehydrogenase, middle domain M1S52_02565 PF02785 Biotin carboxylase C-terminal domain M1S52_02565 PF00289 Biotin carboxylase, N-terminal domain M1S52_02565 PF00364 Biotin-requiring enzyme M1S52_02565 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain M1S52_02575 PF04386 Stringent starvation protein B M1S52_02580 PF00043 Glutathione S-transferase, C-terminal domain M1S52_02580 PF13417 Glutathione S-transferase, N-terminal domain M1S52_02585 PF00380 Ribosomal protein S9/S16 M1S52_02590 PF00572 Ribosomal protein L13 M1S52_02595 PF04166 Pyridoxal phosphate biosynthetic protein PdxA M1S52_02600 PF00398 Ribosomal RNA adenine dimethylase M1S52_02605 PF00149 Calcineurin-like phosphoesterase M1S52_02625 PF16360 GTP-binding GTPase Middle Region M1S52_02625 PF13167 GTP-binding GTPase N-terminal M1S52_02625 PF01926 50S ribosome-binding GTPase M1S52_02635 PF13091 PLD-like domain M1S52_02640 PF00149 Calcineurin-like phosphoesterase M1S52_02640 PF10518 TAT (twin-arginine translocation) pathway signal sequence M1S52_02645 PF00691 OmpA family M1S52_02645 PF01389 OmpA-like transmembrane domain M1S52_02650 PF17152 Periplasmic sensor domain M1S52_02650 PF00990 Diguanylate cyclase, GGDEF domain M1S52_02685 PF07992 Pyridine nucleotide-disulphide oxidoreductase M1S52_02685 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain M1S52_02695 PF00753 Metallo-beta-lactamase superfamily M1S52_02695 PF04273 Putative phosphatase (DUF442) M1S52_02700 PF00561 alpha/beta hydrolase fold M1S52_02705 PF00085 Thioredoxin M1S52_02710 PF03061 Thioesterase superfamily M1S52_02720 PF04461 Protein of unknown function (DUF520) M1S52_02730 PF05430 S-adenosyl-L-methionine-dependent methyltransferase M1S52_02730 PF01266 FAD dependent oxidoreductase M1S52_02740 PF03795 YCII-related domain M1S52_02745 PF04279 Intracellular septation protein A M1S52_02750 PF02811 PHP domain M1S52_02755 PF01062 Bestrophin, RFP-TM, chloride channel M1S52_02760 PF04002 RadC-like JAB domain M1S52_02765 PF02441 Flavoprotein M1S52_02765 PF04127 DNA / pantothenate metabolism flavoprotein M1S52_02770 PF07549 SecD/SecF GG Motif M1S52_02770 PF02355 Protein export membrane protein M1S52_02775 PF07549 SecD/SecF GG Motif M1S52_02775 PF13721 SecD export protein N-terminal TM region M1S52_02775 PF02355 Protein export membrane protein M1S52_02780 PF02699 Preprotein translocase subunit M1S52_02785 PF01702 Queuine tRNA-ribosyltransferase M1S52_02800 PF02547 Queuosine biosynthesis protein M1S52_02810 PF00512 His Kinase A (phospho-acceptor) domain M1S52_02810 PF07689 KaiB domain M1S52_02810 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M1S52_02815 PF08335 GlnD PII-uridylyltransferase M1S52_02815 PF03710 Glutamate-ammonia ligase adenylyltransferase M1S52_02820 PF01063 Amino-transferase class IV M1S52_02835 PF01522 Polysaccharide deacetylase M1S52_02840 PF00535 Glycosyl transferase family 2 M1S52_02845 PF00534 Glycosyl transferases group 1 M1S52_02845 PF13439 Glycosyltransferase Family 4 M1S52_02870 PF17102 Stealth protein CR3, conserved region 3 M1S52_02870 PF11380 Stealth protein CR2, conserved region 2 M1S52_02870 PF17101 Stealth protein CR1, conserved region 1 M1S52_02875 PF00152 tRNA synthetases class II (D, K and N) M1S52_02875 PF02938 GAD domain M1S52_02875 PF01336 OB-fold nucleic acid binding domain M1S52_02885 PF00593 TonB dependent receptor M1S52_02885 PF07715 TonB-dependent Receptor Plug Domain M1S52_02905 PF06146 Phosphate-starvation-inducible E M1S52_02910 PF02798 Glutathione S-transferase, N-terminal domain M1S52_02910 PF00043 Glutathione S-transferase, C-terminal domain M1S52_02915 PF03466 LysR substrate binding domain M1S52_02915 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M1S52_02920 PF00441 Acyl-CoA dehydrogenase, C-terminal domain M1S52_02920 PF12806 Acetyl-CoA dehydrogenase C-terminal like M1S52_02920 PF02770 Acyl-CoA dehydrogenase, middle domain M1S52_02920 PF02771 Acyl-CoA dehydrogenase, N-terminal domain M1S52_02925 PF02771 Acyl-CoA dehydrogenase, N-terminal domain M1S52_02925 PF12806 Acetyl-CoA dehydrogenase C-terminal like M1S52_02925 PF02770 Acyl-CoA dehydrogenase, middle domain M1S52_02925 PF00441 Acyl-CoA dehydrogenase, C-terminal domain M1S52_02935 PF00672 HAMP domain M1S52_02935 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M1S52_02935 PF00512 His Kinase A (phospho-acceptor) domain M1S52_02940 PF00072 Response regulator receiver domain M1S52_02940 PF00486 Transcriptional regulatory protein, C terminal M1S52_02945 PF02696 Uncharacterized ACR, YdiU/UPF0061 family M1S52_02965 PF01923 Cobalamin adenosyltransferase M1S52_02970 PF07715 TonB-dependent Receptor Plug Domain M1S52_02970 PF00593 TonB dependent receptor M1S52_02975 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase M1S52_02980 PF00291 Pyridoxal-phosphate dependent enzyme M1S52_03005 PF00290 Tryptophan synthase alpha chain M1S52_03010 PF01039 Carboxyl transferase domain M1S52_03015 PF02875 Mur ligase family, glutamate ligase domain M1S52_03015 PF08245 Mur ligase middle domain M1S52_03030 PF00753 Metallo-beta-lactamase superfamily M1S52_03035 PF00578 AhpC/TSA family M1S52_03035 PF10417 C-terminal domain of 1-Cys peroxiredoxin M1S52_03040 PF02810 SEC-C motif M1S52_03040 PF07516 SecA Wing and Scaffold domain M1S52_03040 PF01043 SecA preprotein cross-linking domain M1S52_03040 PF07517 SecA DEAD-like domain M1S52_03050 PF00083 Sugar (and other) transporter M1S52_03050 PF07690 Major Facilitator Superfamily M1S52_03055 PF03006 Haemolysin-III related M1S52_03080 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain M1S52_03080 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain M1S52_03080 PF00378 Enoyl-CoA hydratase/isomerase M1S52_03085 PF02803 Thiolase, C-terminal domain M1S52_03085 PF00108 Thiolase, N-terminal domain M1S52_03090 PF12833 Helix-turn-helix domain M1S52_03090 PF02311 AraC-like ligand binding domain M1S52_03095 PF02515 CoA-transferase family III M1S52_03100 PF04966 Carbohydrate-selective porin, OprB family M1S52_03105 PF01011 PQQ enzyme repeat M1S52_03110 PF01077 Nitrite and sulphite reductase 4Fe-4S domain M1S52_03110 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain M1S52_03120 PF00893 Small Multidrug Resistance protein M1S52_03130 PF02803 Thiolase, C-terminal domain M1S52_03130 PF00108 Thiolase, N-terminal domain M1S52_03140 PF13505 Outer membrane protein beta-barrel domain M1S52_03140 PF00691 OmpA family M1S52_03150 PF01139 tRNA-splicing ligase RtcB M1S52_03155 PF00324 Amino acid permease M1S52_03160 PF05175 Methyltransferase small domain M1S52_03160 PF08468 Methyltransferase small domain N-terminal M1S52_03165 PF00860 Permease family M1S52_03170 PF00679 Elongation factor G C-terminus M1S52_03170 PF00009 Elongation factor Tu GTP binding domain M1S52_03170 PF03144 Elongation factor Tu domain 2 M1S52_03175 PF01741 Large-conductance mechanosensitive channel, MscL M1S52_03190 PF06827 Zinc finger found in FPG and IleRS M1S52_03190 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain M1S52_03190 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain M1S52_03195 PF02245 Methylpurine-DNA glycosylase (MPG) M1S52_03215 PF00724 NADH:flavin oxidoreductase / NADH oxidase family M1S52_03230 PF13098 Thioredoxin-like domain M1S52_03230 PF10411 Disulfide bond isomerase protein N-terminus M1S52_03235 PF01571 Aminomethyltransferase folate-binding domain M1S52_03245 PF04343 Protein of unknown function, DUF488 M1S52_03250 PF08274 PhnA Zinc-Ribbon M1S52_03250 PF03831 PhnA domain M1S52_03255 PF07411 Domain of unknown function (DUF1508) M1S52_03260 PF03129 Anticodon binding domain M1S52_03260 PF04073 Aminoacyl-tRNA editing domain M1S52_03260 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) M1S52_03265 PF00873 AcrB/AcrD/AcrF family M1S52_03280 PF00072 Response regulator receiver domain M1S52_03285 PF00072 Response regulator receiver domain M1S52_03290 PF01584 CheW-like domain M1S52_03295 PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term M1S52_03295 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain M1S52_03300 PF01627 Hpt domain M1S52_03300 PF00072 Response regulator receiver domain M1S52_03300 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M1S52_03300 PF01584 CheW-like domain M1S52_03310 PF01546 Peptidase family M20/M25/M40 M1S52_03310 PF07687 Peptidase dimerisation domain M1S52_03315 PF08085 Entericidin EcnA/B family M1S52_03325 PF04304 Protein of unknown function (DUF454) M1S52_03330 PF17969 L,D-transpeptidase C-terminal domain M1S52_03330 PF03734 L,D-transpeptidase catalytic domain M1S52_03370 PF00258 Flavodoxin M1S52_03370 PF00667 FAD binding domain M1S52_03370 PF00175 Oxidoreductase NAD-binding domain M1S52_03380 PF12805 FUSC-like inner membrane protein yccS M1S52_03385 PF07690 Major Facilitator Superfamily M1S52_03390 PF00881 Nitroreductase family M1S52_03405 PF01235 Sodium:alanine symporter family M1S52_03410 PF01734 Patatin-like phospholipase M1S52_03415 PF13291 ACT domain M1S52_03415 PF00291 Pyridoxal-phosphate dependent enzyme M1S52_03420 PF05992 SbmA/BacA-like family M1S52_03450 PF02934 GatB/GatE catalytic domain M1S52_03450 PF02637 GatB domain M1S52_03455 PF01425 Amidase M1S52_03460 PF02686 Glu-tRNAGln amidotransferase C subunit M1S52_03470 PF04085 rod shape-determining protein MreC M1S52_03475 PF04093 rod shape-determining protein MreD M1S52_03480 PF02545 Maf-like protein M1S52_03485 PF00575 S1 RNA binding domain M1S52_03485 PF10150 Ribonuclease E/G family M1S52_03495 PF03007 Wax ester synthase-like Acyl-CoA acyltransferase domain M1S52_03495 PF06974 Protein of unknown function (DUF1298) M1S52_03500 PF01507 Phosphoadenosine phosphosulfate reductase family M1S52_03515 PF02525 Flavodoxin-like fold M1S52_03535 PF02673 Bacitracin resistance protein BacA M1S52_03540 PF12833 Helix-turn-helix domain M1S52_03540 PF06719 AraC-type transcriptional regulator N-terminus M1S52_03545 PF00109 Beta-ketoacyl synthase, N-terminal domain M1S52_03545 PF16197 Ketoacyl-synthetase C-terminal extension M1S52_03545 PF09277 Erythronolide synthase, docking M1S52_03545 PF08990 Erythronolide synthase docking M1S52_03545 PF08240 Alcohol dehydrogenase GroES-like domain M1S52_03545 PF08659 KR domain M1S52_03545 PF00550 Phosphopantetheine attachment site M1S52_03545 PF14765 Polyketide synthase dehydratase M1S52_03545 PF02801 Beta-ketoacyl synthase, C-terminal domain M1S52_03545 PF00698 Acyl transferase domain M1S52_03550 PF01965 DJ-1/PfpI family M1S52_03560 PF00324 Amino acid permease M1S52_03565 PF04303 PrpF protein M1S52_03570 PF00348 Polyprenyl synthetase M1S52_03575 PF04237 YjbR M1S52_03580 PF01145 SPFH domain / Band 7 family M1S52_03590 PF01734 Patatin-like phospholipase M1S52_03615 PF00072 Response regulator receiver domain M1S52_03615 PF00486 Transcriptional regulatory protein, C terminal M1S52_03620 PF00512 His Kinase A (phospho-acceptor) domain M1S52_03620 PF08521 Two-component sensor kinase N-terminal M1S52_03620 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M1S52_03630 PF00909 Ammonium Transporter Family M1S52_03635 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M1S52_03635 PF03466 LysR substrate binding domain M1S52_03655 PF08264 Anticodon-binding domain of tRNA M1S52_03655 PF00133 tRNA synthetases class I (I, L, M and V) M1S52_03655 PF10458 Valyl tRNA synthetase tRNA binding arm M1S52_03675 PF01906 Putative heavy-metal-binding M1S52_03680 PF01906 Putative heavy-metal-binding M1S52_03685 PF02321 Outer membrane efflux protein M1S52_03690 PF00873 AcrB/AcrD/AcrF family M1S52_03695 PF00529 HlyD membrane-fusion protein of T1SS M1S52_03695 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion M1S52_03700 PF01569 PAP2 superfamily M1S52_03710 PF00348 Polyprenyl synthetase M1S52_03720 PF00829 Ribosomal prokaryotic L21 protein M1S52_03725 PF01016 Ribosomal L27 protein M1S52_03730 PF03548 Outer membrane lipoprotein carrier protein LolA M1S52_03740 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) M1S52_03740 PF02403 Seryl-tRNA synthetase N-terminal domain M1S52_03745 PF10414 Sirohaem synthase dimerisation region M1S52_03745 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases M1S52_03745 PF14824 Sirohaem biosynthesis protein central M1S52_03750 PF00588 SpoU rRNA Methylase family M1S52_03755 PF01638 HxlR-like helix-turn-helix M1S52_03760 PF03358 NADPH-dependent FMN reductase M1S52_03765 PF13520 Amino acid permease M1S52_03770 PF00465 Iron-containing alcohol dehydrogenase M1S52_03780 PF03099 Biotin/lipoate A/B protein ligase family M1S52_03785 PF04359 Protein of unknown function (DUF493) M1S52_03790 PF04545 Sigma-70, region 4 M1S52_03790 PF04539 Sigma-70 region 3 M1S52_03790 PF04546 Sigma-70, non-essential region M1S52_03790 PF04542 Sigma-70 region 2 M1S52_03790 PF00140 Sigma-70 factor, region 1.2 M1S52_03790 PF03979 Sigma-70 factor, region 1.1 M1S52_03810 PF00581 Rhodanese-like domain M1S52_03810 PF17773 UPF0176 acylphosphatase like domain M1S52_03820 PF00285 Citrate synthase, C-terminal domain M1S52_03825 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit M1S52_03830 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit M1S52_03835 PF00890 FAD binding domain M1S52_03835 PF02910 Fumarate reductase flavoprotein C-term M1S52_03840 PF13085 2Fe-2S iron-sulfur cluster binding domain M1S52_03855 PF16078 2-oxoglutarate dehydrogenase N-terminus M1S52_03855 PF00676 Dehydrogenase E1 component M1S52_03855 PF16870 2-oxoglutarate dehydrogenase C-terminal M1S52_03855 PF02779 Transketolase, pyrimidine binding domain M1S52_03860 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) M1S52_03860 PF00364 Biotin-requiring enzyme M1S52_03860 PF02817 e3 binding domain M1S52_03865 PF07992 Pyridine nucleotide-disulphide oxidoreductase M1S52_03865 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain M1S52_03870 PF08442 ATP-grasp domain M1S52_03870 PF00549 CoA-ligase M1S52_03875 PF00549 CoA-ligase M1S52_03875 PF02629 CoA binding domain M1S52_03880 PF00579 tRNA synthetases class I (W and Y) M1S52_03885 PF05661 Protein of unknown function (DUF808) M1S52_03890 PF04228 Putative neutral zinc metallopeptidase M1S52_03895 PF00999 Sodium/hydrogen exchanger family M1S52_03910 PF09587 Bacterial capsule synthesis protein PGA_cap M1S52_03920 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain M1S52_03925 PF00582 Universal stress protein family M1S52_03930 PF00132 Bacterial transferase hexapeptide (six repeats) M1S52_03935 PF01272 Transcription elongation factor, GreA/GreB, C-term M1S52_03935 PF03449 Transcription elongation factor, N-terminal M1S52_03940 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain M1S52_03940 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain M1S52_03940 PF02142 MGS-like domain M1S52_03945 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain M1S52_03945 PF00117 Glutamine amidotransferase class-I M1S52_03960 PF01985 CRS1 / YhbY (CRM) domain M1S52_03965 PF01728 FtsJ-like methyltransferase M1S52_03970 PF06480 FtsH Extracellular M1S52_03970 PF00004 ATPase family associated with various cellular activities (AAA) M1S52_03970 PF17862 AAA+ lid domain M1S52_03970 PF01434 Peptidase family M41 M1S52_03975 PF00809 Pterin binding enzyme M1S52_03995 PF16655 PhoD-like phosphatase, N-terminal domain M1S52_03995 PF09423 PhoD-like phosphatase M1S52_04010 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain M1S52_04010 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain M1S52_04025 PF00083 Sugar (and other) transporter M1S52_04030 PF02782 FGGY family of carbohydrate kinases, C-terminal domain M1S52_04030 PF00370 FGGY family of carbohydrate kinases, N-terminal domain M1S52_04035 PF01266 FAD dependent oxidoreductase M1S52_04035 PF16901 C-terminal domain of alpha-glycerophosphate oxidase M1S52_04040 PF00821 Phosphoenolpyruvate carboxykinase C-terminal P-loop domain M1S52_04040 PF17297 Phosphoenolpyruvate carboxykinase N-terminal domain M1S52_04045 PF00781 Diacylglycerol kinase catalytic domain M1S52_04050 PF00149 Calcineurin-like phosphoesterase M1S52_04060 PF00166 Chaperonin 10 Kd subunit M1S52_04065 PF00118 TCP-1/cpn60 chaperonin family M1S52_04070 PF01219 Prokaryotic diacylglycerol kinase M1S52_04080 PF03009 Glycerophosphoryl diester phosphodiesterase family M1S52_04085 PF00873 AcrB/AcrD/AcrF family M1S52_04095 PF01435 Peptidase family M48 M1S52_04100 PF01464 Transglycosylase SLT domain M1S52_04105 PF01171 PP-loop family M1S52_04115 PF00497 Bacterial extracellular solute-binding proteins, family 3 M1S52_04115 PF01464 Transglycosylase SLT domain M1S52_04120 PF01272 Transcription elongation factor, GreA/GreB, C-term M1S52_04120 PF03449 Transcription elongation factor, N-terminal M1S52_04135 PF00550 Phosphopantetheine attachment site M1S52_04135 PF00668 Condensation domain M1S52_04135 PF13193 AMP-binding enzyme C-terminal domain M1S52_04135 PF00975 Thioesterase domain M1S52_04135 PF00501 AMP-binding enzyme M1S52_04165 PF00881 Nitroreductase family M1S52_04180 PF02595 Glycerate kinase family M1S52_04185 PF00384 Molybdopterin oxidoreductase M1S52_04190 PF02634 FdhD/NarQ family M1S52_04195 PF06803 Protein of unknown function (DUF1232) M1S52_04200 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain M1S52_04200 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain M1S52_04200 PF11890 Domain of unknown function (DUF3410) M1S52_04205 PF00152 tRNA synthetases class II (D, K and N) M1S52_04215 PF18073 Rubredoxin metal binding domain M1S52_04220 PF00324 Amino acid permease M1S52_04230 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain M1S52_04230 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain M1S52_04235 PF01678 Diaminopimelate epimerase M1S52_04240 PF01810 LysE type translocator M1S52_04245 PF02899 Phage integrase, N-terminal SAM-like domain M1S52_04245 PF00589 Phage integrase family M1S52_04250 PF01012 Electron transfer flavoprotein domain M1S52_04255 PF01012 Electron transfer flavoprotein domain M1S52_04255 PF00766 Electron transfer flavoprotein FAD-binding domain M1S52_04260 PF03989 DNA gyrase C-terminal domain, beta-propeller M1S52_04260 PF00521 DNA gyrase/topoisomerase IV, subunit A M1S52_04275 PF00535 Glycosyl transferase family 2 M1S52_04295 PF13533 Biotin-lipoyl like M1S52_04305 PF00266 Aminotransferase class-V M1S52_04320 PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 M1S52_04330 PF02687 FtsX-like permease family M1S52_04330 PF12704 MacB-like periplasmic core domain M1S52_04335 PF00005 ABC transporter M1S52_04340 PF03772 Competence protein M1S52_04340 PF13567 Domain of unknown function (DUF4131) M1S52_04340 PF00753 Metallo-beta-lactamase superfamily M1S52_04350 PF06965 Na+/H+ antiporter 1 M1S52_04350 PF01343 Peptidase family S49 M1S52_04355 PF12697 Alpha/beta hydrolase family M1S52_04360 PF00551 Formyl transferase M1S52_04365 PF00586 AIR synthase related protein, N-terminal domain M1S52_04365 PF02769 AIR synthase related protein, C-terminal domain M1S52_04370 PF01594 AI-2E family transporter M1S52_04375 PF00308 Bacterial dnaA protein M1S52_04375 PF08299 Bacterial dnaA protein helix-turn-helix M1S52_04375 PF11638 DnaA N-terminal domain M1S52_04405 PF08032 RNA 2'-O ribose methyltransferase substrate binding M1S52_04405 PF00588 SpoU rRNA Methylase family M1S52_04410 PF00316 Fructose-1-6-bisphosphatase, N-terminal domain M1S52_04420 PF00691 OmpA family M1S52_04425 PF07676 WD40-like Beta Propeller Repeat M1S52_04425 PF04052 TolB amino-terminal domain M1S52_04435 PF02472 Biopolymer transport protein ExbD/TolR M1S52_04440 PF01618 MotA/TolQ/ExbB proton channel family M1S52_04445 PF03061 Thioesterase superfamily M1S52_04450 PF07687 Peptidase dimerisation domain M1S52_04450 PF01546 Peptidase family M20/M25/M40 M1S52_04455 PF05491 RuvB C-terminal winged helix domain M1S52_04455 PF17864 RuvB AAA lid domain M1S52_04455 PF05496 Holliday junction DNA helicase RuvB P-loop domain M1S52_04460 PF01330 RuvA N terminal domain M1S52_04460 PF07499 RuvA, C-terminal domain M1S52_04465 PF01966 HD domain M1S52_04470 PF02769 AIR synthase related protein, C-terminal domain M1S52_04470 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain M1S52_04470 PF18076 Formylglycinamide ribonucleotide amidotransferase N-terminal M1S52_04475 PF07690 Major Facilitator Superfamily M1S52_04480 PF01784 NIF3 (NGG1p interacting factor 3) M1S52_04485 PF00378 Enoyl-CoA hydratase/isomerase M1S52_04490 PF01467 Cytidylyltransferase-like M1S52_04490 PF00293 NUDIX domain M1S52_04500 PF00578 AhpC/TSA family M1S52_04515 PF06508 Queuosine biosynthesis protein QueC M1S52_04525 PF00132 Bacterial transferase hexapeptide (six repeats) M1S52_04525 PF14805 Tetrahydrodipicolinate N-succinyltransferase N-terminal M1S52_04525 PF14602 Hexapeptide repeat of succinyl-transferase M1S52_04535 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M1S52_04535 PF03466 LysR substrate binding domain M1S52_04540 PF00005 ABC transporter M1S52_04540 PF12857 TOBE-like domain M1S52_04545 PF00528 Binding-protein-dependent transport system inner membrane component M1S52_04550 PF00528 Binding-protein-dependent transport system inner membrane component M1S52_04565 PF01063 Amino-transferase class IV M1S52_04570 PF02618 YceG-like family M1S52_04575 PF02223 Thymidylate kinase M1S52_04585 PF00890 FAD binding domain M1S52_04585 PF02910 Fumarate reductase flavoprotein C-term M1S52_04600 PF03144 Elongation factor Tu domain 2 M1S52_04600 PF00679 Elongation factor G C-terminus M1S52_04600 PF00009 Elongation factor Tu GTP binding domain M1S52_04600 PF06421 GTP-binding protein LepA C-terminus M1S52_04605 PF10502 Signal peptidase, peptidase S26 M1S52_04615 PF14622 Ribonuclease-III-like M1S52_04615 PF00035 Double-stranded RNA binding motif M1S52_04620 PF01926 50S ribosome-binding GTPase M1S52_04620 PF07650 KH domain M1S52_04630 PF11967 Recombination protein O N terminal M1S52_04630 PF02565 Recombination protein O C terminal M1S52_04635 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ M1S52_04640 PF06175 tRNA-(MS[2]IO[6]A)-hydroxylase (MiaE) M1S52_04645 PF00106 short chain dehydrogenase M1S52_04675 PF00155 Aminotransferase class I and II M1S52_04685 PF00990 Diguanylate cyclase, GGDEF domain M1S52_04685 PF17151 Periplasmic sensor domain M1S52_04695 PF00271 Helicase conserved C-terminal domain M1S52_04695 PF04851 Type III restriction enzyme, res subunit M1S52_04695 PF02151 UvrB/uvrC motif M1S52_04695 PF12344 Ultra-violet resistance protein B M1S52_04695 PF17757 UvrB interaction domain M1S52_04705 PF00892 EamA-like transporter family M1S52_04710 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain M1S52_04710 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain M1S52_04725 PF01018 GTP1/OBG M1S52_04725 PF01926 50S ribosome-binding GTPase M1S52_04730 PF01472 PUA domain M1S52_04730 PF00696 Amino acid kinase family M1S52_04740 PF07759 Protein of unknown function (DUF1615) M1S52_04745 PF01207 Dihydrouridine synthase (Dus) M1S52_04750 PF03060 Nitronate monooxygenase M1S52_04765 PF02350 UDP-N-acetylglucosamine 2-epimerase M1S52_04795 PF00875 DNA photolyase M1S52_04795 PF03441 FAD binding domain of DNA photolyase M1S52_04800 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase M1S52_04805 PF07992 Pyridine nucleotide-disulphide oxidoreductase M1S52_04810 PF07943 Penicillin-binding protein 5, C-terminal domain M1S52_04810 PF00768 D-alanyl-D-alanine carboxypeptidase M1S52_04820 PF03971 Monomeric isocitrate dehydrogenase M1S52_04825 PF00849 RNA pseudouridylate synthase M1S52_04830 PF00180 Isocitrate/isopropylmalate dehydrogenase M1S52_04850 PF06779 Uncharacterised MFS-type transporter YbfB M1S52_04855 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M1S52_04855 PF03466 LysR substrate binding domain M1S52_04860 PF00375 Sodium:dicarboxylate symporter family M1S52_04865 PF02567 Phenazine biosynthesis-like protein M1S52_04870 PF00675 Insulinase (Peptidase family M16) M1S52_04870 PF05193 Peptidase M16 inactive domain M1S52_04895 PF02581 Thiamine monophosphate synthase M1S52_04900 PF00202 Aminotransferase class-III M1S52_04910 PF00849 RNA pseudouridylate synthase M1S52_04915 PF00176 SNF2 family N-terminal domain M1S52_04915 PF18337 RapA N-terminal Tudor like domain M1S52_04915 PF00271 Helicase conserved C-terminal domain M1S52_04915 PF18339 RapA N-terminal Tudor like domain 1 M1S52_04915 PF12137 RNA polymerase recycling family C-terminal M1S52_04925 PF00440 Bacterial regulatory proteins, tetR family M1S52_04930 PF00970 Oxidoreductase FAD-binding domain M1S52_04930 PF00111 2Fe-2S iron-sulfur cluster binding domain M1S52_04930 PF00175 Oxidoreductase NAD-binding domain M1S52_04935 PF00487 Fatty acid desaturase M1S52_04945 PF17754 MftR C-terminal domain M1S52_04945 PF00440 Bacterial regulatory proteins, tetR family M1S52_04955 PF00202 Aminotransferase class-III M1S52_04960 PF00282 Pyridoxal-dependent decarboxylase conserved domain M1S52_04965 PF00171 Aldehyde dehydrogenase family M1S52_04970 PF01037 Lrp/AsnC ligand binding domain M1S52_04975 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain M1S52_04975 PF00205 Thiamine pyrophosphate enzyme, central domain M1S52_04975 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain M1S52_04980 PF00324 Amino acid permease M1S52_04985 PF12849 PBP superfamily domain M1S52_04990 PF00528 Binding-protein-dependent transport system inner membrane component M1S52_04995 PF00528 Binding-protein-dependent transport system inner membrane component M1S52_05000 PF00005 ABC transporter M1S52_05005 PF01343 Peptidase family S49 M1S52_05005 PF08496 Peptidase family S49 N-terminal M1S52_05020 PF08328 Adenylosuccinate lyase C-terminal M1S52_05020 PF00206 Lyase M1S52_05025 PF04356 Protein of unknown function (DUF489) M1S52_05035 PF13344 Haloacid dehalogenase-like hydrolase M1S52_05035 PF00293 NUDIX domain M1S52_05040 PF00132 Bacterial transferase hexapeptide (six repeats) M1S52_05045 PF07943 Penicillin-binding protein 5, C-terminal domain M1S52_05045 PF00768 D-alanyl-D-alanine carboxypeptidase M1S52_05060 PF01975 Survival protein SurE M1S52_05065 PF01551 Peptidase family M23 M1S52_05065 PF01476 LysM domain M1S52_05070 PF03466 LysR substrate binding domain M1S52_05070 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M1S52_05075 PF05362 Lon protease (S16) C-terminal proteolytic domain M1S52_05075 PF13654 AAA domain M1S52_05080 PF07690 Major Facilitator Superfamily M1S52_05085 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily M1S52_05090 PF13593 SBF-like CPA transporter family (DUF4137) M1S52_05095 PF01197 Ribosomal protein L31 M1S52_05110 PF04055 Radical SAM superfamily M1S52_05115 PF08207 Elongation factor P (EF-P) KOW-like domain M1S52_05115 PF09285 Elongation factor P, C-terminal M1S52_05115 PF01132 Elongation factor P (EF-P) OB domain M1S52_05120 PF02554 Carbon starvation protein CstA M1S52_05120 PF13722 5TM C-terminal transporter carbon starvation CstA M1S52_05125 PF04328 Selenoprotein, putative M1S52_05160 PF13556 PucR C-terminal helix-turn-helix domain M1S52_05160 PF06018 CodY GAF-like domain M1S52_05160 PF17853 GGDEF-like domain M1S52_05175 PF00171 Aldehyde dehydrogenase family M1S52_05180 PF00324 Amino acid permease M1S52_05185 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M1S52_05185 PF03466 LysR substrate binding domain M1S52_05190 PF02028 BCCT, betaine/carnitine/choline family transporter M1S52_05195 PF02028 BCCT, betaine/carnitine/choline family transporter M1S52_05200 PF00848 Ring hydroxylating alpha subunit (catalytic domain) M1S52_05200 PF00355 Rieske [2Fe-2S] domain M1S52_05205 PF00171 Aldehyde dehydrogenase family M1S52_05215 PF18113 Rubredoxin binding C-terminal domain M1S52_05215 PF07992 Pyridine nucleotide-disulphide oxidoreductase M1S52_05220 PF01266 FAD dependent oxidoreductase M1S52_05220 PF05430 S-adenosyl-L-methionine-dependent methyltransferase M1S52_05240 PF00892 EamA-like transporter family M1S52_05250 PF02604 Antitoxin Phd_YefM, type II toxin-antitoxin system M1S52_05255 PF00083 Sugar (and other) transporter M1S52_05260 PF13378 Enolase C-terminal domain-like M1S52_05260 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain M1S52_05265 PF02801 Beta-ketoacyl synthase, C-terminal domain M1S52_05265 PF08659 KR domain M1S52_05265 PF00109 Beta-ketoacyl synthase, N-terminal domain M1S52_05265 PF16197 Ketoacyl-synthetase C-terminal extension M1S52_05265 PF09277 Erythronolide synthase, docking M1S52_05265 PF08990 Erythronolide synthase docking M1S52_05265 PF08240 Alcohol dehydrogenase GroES-like domain M1S52_05265 PF00698 Acyl transferase domain M1S52_05265 PF14765 Polyketide synthase dehydratase M1S52_05265 PF00550 Phosphopantetheine attachment site M1S52_05270 PF00440 Bacterial regulatory proteins, tetR family M1S52_05290 PF17954 Quercetinase C-terminal cupin domain M1S52_05290 PF02678 Pirin M1S52_05300 PF08348 YheO-like PAS domain M1S52_05300 PF13309 HTH domain M1S52_05310 PF13193 AMP-binding enzyme C-terminal domain M1S52_05310 PF00668 Condensation domain M1S52_05310 PF00550 Phosphopantetheine attachment site M1S52_05310 PF00501 AMP-binding enzyme M1S52_05315 PF00975 Thioesterase domain M1S52_05315 PF00501 AMP-binding enzyme M1S52_05315 PF00550 Phosphopantetheine attachment site M1S52_05315 PF00668 Condensation domain M1S52_05315 PF13193 AMP-binding enzyme C-terminal domain M1S52_05320 PF01032 FecCD transport family M1S52_05325 PF01032 FecCD transport family M1S52_05330 PF00005 ABC transporter M1S52_05335 PF01497 Periplasmic binding protein M1S52_05345 PF13434 L-lysine 6-monooxygenase (NADPH-requiring) M1S52_05350 PF00501 AMP-binding enzyme M1S52_05350 PF00668 Condensation domain M1S52_05350 PF00550 Phosphopantetheine attachment site M1S52_05355 PF13193 AMP-binding enzyme C-terminal domain M1S52_05355 PF00501 AMP-binding enzyme M1S52_05360 PF00550 Phosphopantetheine attachment site M1S52_05360 PF00857 Isochorismatase family M1S52_05365 PF00282 Pyridoxal-dependent decarboxylase conserved domain M1S52_05375 PF00005 ABC transporter M1S52_05380 PF00005 ABC transporter M1S52_05385 PF00975 Thioesterase domain M1S52_05395 PF00425 chorismate binding enzyme M1S52_05405 PF01208 Uroporphyrinogen decarboxylase (URO-D) M1S52_05410 PF05675 Protein of unknown function (DUF817) M1S52_05425 PF00144 Beta-lactamase M1S52_05435 PF01227 GTP cyclohydrolase I M1S52_05440 PF00111 2Fe-2S iron-sulfur cluster binding domain M1S52_05440 PF01799 [2Fe-2S] binding domain M1S52_05445 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain M1S52_05445 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase M1S52_05460 PF00218 Indole-3-glycerol phosphate synthase M1S52_05465 PF00591 Glycosyl transferase family, a/b domain M1S52_05465 PF02885 Glycosyl transferase family, helical bundle domain M1S52_05470 PF07715 TonB-dependent Receptor Plug Domain M1S52_05470 PF00593 TonB dependent receptor M1S52_05475 PF11838 ERAP1-like C-terminal domain M1S52_05475 PF01433 Peptidase family M1 domain M1S52_05480 PF00117 Glutamine amidotransferase class-I M1S52_05840 PF13356 Arm DNA-binding domain M1S52_05840 PF00589 Phage integrase family M1S52_05850 PF00854 POT family M1S52_05855 PF00120 Glutamine synthetase, catalytic domain M1S52_05855 PF03951 Glutamine synthetase, beta-Grasp domain M1S52_05860 PF04345 Chorismate lyase M1S52_05865 PF01040 UbiA prenyltransferase family M1S52_05900 PF02777 Iron/manganese superoxide dismutases, C-terminal domain M1S52_05900 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain M1S52_05915 PF12627 Probable RNA and SrmB- binding site of polymerase A M1S52_05915 PF01743 Poly A polymerase head domain M1S52_05925 PF00390 Malic enzyme, N-terminal domain M1S52_05925 PF03949 Malic enzyme, NAD binding domain M1S52_05925 PF01515 Phosphate acetyl/butaryl transferase M1S52_05930 PF00563 EAL domain M1S52_05930 PF00990 Diguanylate cyclase, GGDEF domain M1S52_05930 PF03707 Bacterial signalling protein N terminal repeat M1S52_05935 PF04452 RNA methyltransferase M1S52_05940 PF02219 Methylenetetrahydrofolate reductase M1S52_05945 PF05221 S-adenosyl-L-homocysteine hydrolase M1S52_05945 PF00670 S-adenosyl-L-homocysteine hydrolase, NAD binding domain M1S52_05960 PF02771 Acyl-CoA dehydrogenase, N-terminal domain M1S52_05960 PF09317 Domain of unknown function (DUF1974) M1S52_05960 PF00441 Acyl-CoA dehydrogenase, C-terminal domain M1S52_05965 PF04055 Radical SAM superfamily M1S52_05970 PF07992 Pyridine nucleotide-disulphide oxidoreductase M1S52_05970 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain M1S52_05980 PF07690 Major Facilitator Superfamily M1S52_05990 PF00557 Metallopeptidase family M24 M1S52_05995 PF00318 Ribosomal protein S2 M1S52_06000 PF00889 Elongation factor TS M1S52_06010 PF12833 Helix-turn-helix domain M1S52_06030 PF03330 Lytic transglycolase M1S52_06030 PF05036 Sporulation related domain M1S52_06035 PF13406 Transglycosylase SLT domain M1S52_06040 PF01098 Cell cycle protein M1S52_06050 PF14489 QueF-like protein M1S52_06050 PF14819 Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term M1S52_06055 PF01061 ABC-2 type transporter M1S52_06060 PF00005 ABC transporter M1S52_06090 PF00464 Serine hydroxymethyltransferase M1S52_06095 PF02321 Outer membrane efflux protein M1S52_06100 PF00873 AcrB/AcrD/AcrF family M1S52_06105 PF13533 Biotin-lipoyl like M1S52_06110 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M1S52_06110 PF03466 LysR substrate binding domain M1S52_06115 PF00497 Bacterial extracellular solute-binding proteins, family 3 M1S52_06120 PF00528 Binding-protein-dependent transport system inner membrane component M1S52_06125 PF00528 Binding-protein-dependent transport system inner membrane component M1S52_06130 PF00005 ABC transporter M1S52_06135 PF00893 Small Multidrug Resistance protein M1S52_06140 PF00037 4Fe-4S binding domain M1S52_06145 PF01136 Peptidase family U32 M1S52_06145 PF16325 Peptidase family U32 C-terminal domain M1S52_06150 PF00155 Aminotransferase class I and II M1S52_06150 PF00392 Bacterial regulatory proteins, gntR family M1S52_06155 PF02567 Phenazine biosynthesis-like protein M1S52_06160 PF00970 Oxidoreductase FAD-binding domain M1S52_06160 PF00175 Oxidoreductase NAD-binding domain M1S52_06165 PF01980 tRNA-methyltransferase O M1S52_06165 PF18389 TrmO C-terminal domain M1S52_06175 PF00437 Type II/IV secretion system protein M1S52_06175 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain M1S52_06185 PF00072 Response regulator receiver domain M1S52_06185 PF00486 Transcriptional regulatory protein, C terminal M1S52_06190 PF00512 His Kinase A (phospho-acceptor) domain M1S52_06190 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M1S52_06190 PF08521 Two-component sensor kinase N-terminal M1S52_06200 PF00293 NUDIX domain M1S52_06210 PF14814 Bifunctional transglycosylase second domain M1S52_06210 PF00905 Penicillin binding protein transpeptidase domain M1S52_06210 PF00912 Transglycosylase M1S52_06215 PF01513 ATP-NAD kinase M1S52_06220 PF07023 Protein of unknown function (DUF1315) M1S52_06225 PF00591 Glycosyl transferase family, a/b domain M1S52_06225 PF02885 Glycosyl transferase family, helical bundle domain M1S52_06230 PF00375 Sodium:dicarboxylate symporter family M1S52_06235 PF02770 Acyl-CoA dehydrogenase, middle domain M1S52_06235 PF02771 Acyl-CoA dehydrogenase, N-terminal domain M1S52_06235 PF00441 Acyl-CoA dehydrogenase, C-terminal domain M1S52_06240 PF00756 Putative esterase M1S52_06245 PF01842 ACT domain M1S52_06245 PF00800 Prephenate dehydratase M1S52_06245 PF01817 Chorismate mutase type II M1S52_06250 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) M1S52_06260 PF07687 Peptidase dimerisation domain M1S52_06260 PF01546 Peptidase family M20/M25/M40 M1S52_06265 PF12706 Beta-lactamase superfamily domain M1S52_06275 PF03883 Peroxide stress protein YaaA M1S52_06285 PF05690 Thiazole biosynthesis protein ThiG M1S52_06295 PF04241 Protein of unknown function (DUF423) M1S52_06300 PF00140 Sigma-70 factor, region 1.2 M1S52_06300 PF04542 Sigma-70 region 2 M1S52_06300 PF04545 Sigma-70, region 4 M1S52_06315 PF00313 'Cold-shock' DNA-binding domain M1S52_06320 PF00270 DEAD/DEAH box helicase M1S52_06320 PF00271 Helicase conserved C-terminal domain M1S52_06330 PF00881 Nitroreductase family M1S52_06335 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus M1S52_06335 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus M1S52_06355 PF01180 Dihydroorotate dehydrogenase M1S52_06360 PF02674 Colicin V production protein M1S52_06365 PF00156 Phosphoribosyl transferase domain M1S52_06380 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain M1S52_06380 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain M1S52_06385 PF01435 Peptidase family M48 M1S52_06390 PF09424 Yqey-like protein M1S52_06395 PF01165 Ribosomal protein S21 M1S52_06400 PF00814 Glycoprotease family M1S52_06420 PF00069 Protein kinase domain M1S52_06445 PF03466 LysR substrate binding domain M1S52_06445 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M1S52_06450 PF00202 Aminotransferase class-III M1S52_06455 PF00171 Aldehyde dehydrogenase family M1S52_06460 PF00324 Amino acid permease M1S52_06490 PF04076 Bacterial OB fold (BOF) protein M1S52_06515 PF00561 alpha/beta hydrolase fold M1S52_06520 PF03616 Sodium/glutamate symporter M1S52_06530 PF07729 FCD domain M1S52_06530 PF00392 Bacterial regulatory proteins, gntR family M1S52_06590 PF08946 Osmosensory transporter coiled coil M1S52_06590 PF00083 Sugar (and other) transporter M1S52_06615 PF00155 Aminotransferase class I and II M1S52_06620 PF02080 TrkA-C domain M1S52_06620 PF06826 Predicted Permease Membrane Region M1S52_06630 PF04403 Paraquat-inducible protein A M1S52_06635 PF02470 MlaD protein M1S52_06645 PF01177 Asp/Glu/Hydantoin racemase M1S52_06650 PF00892 EamA-like transporter family M1S52_06655 PF07995 Glucose / Sorbosone dehydrogenase M1S52_06665 PF13610 DDE domain M1S52_06680 PF13610 DDE domain M1S52_06695 PF00375 Sodium:dicarboxylate symporter family M1S52_06705 PF16123 Hydroxyacylglutathione hydrolase C-terminus M1S52_06705 PF00753 Metallo-beta-lactamase superfamily M1S52_06710 PF00528 Binding-protein-dependent transport system inner membrane component M1S52_06715 PF00005 ABC transporter M1S52_06715 PF09383 NIL domain M1S52_06720 PF03180 NLPA lipoprotein M1S52_06725 PF02844 Phosphoribosylglycinamide synthetase, N domain M1S52_06725 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain M1S52_06725 PF02843 Phosphoribosylglycinamide synthetase, C domain M1S52_06730 PF01808 AICARFT/IMPCHase bienzyme M1S52_06730 PF02142 MGS-like domain M1S52_06735 PF02954 Bacterial regulatory protein, Fis family M1S52_06755 PF01134 Glucose inhibited division protein A M1S52_06755 PF13932 GidA associated domain M1S52_06765 PF14403 Circularly permuted ATP-grasp type 2 M1S52_06775 PF08379 Bacterial transglutaminase-like N-terminal region M1S52_06775 PF01841 Transglutaminase-like superfamily M1S52_06785 PF01168 Alanine racemase, N-terminal domain M1S52_06785 PF00842 Alanine racemase, C-terminal domain M1S52_06790 PF03796 DnaB-like helicase C terminal domain M1S52_06790 PF00772 DnaB-like helicase N terminal domain M1S52_06795 PF03948 Ribosomal protein L9, C-terminal domain M1S52_06795 PF01281 Ribosomal protein L9, N-terminal domain M1S52_06800 PF01084 Ribosomal protein S18 M1S52_06805 PF01250 Ribosomal protein S6 M1S52_06810 PF01040 UbiA prenyltransferase family M1S52_06815 PF03626 Prokaryotic Cytochrome C oxidase subunit IV M1S52_06820 PF00510 Cytochrome c oxidase subunit III M1S52_06825 PF00115 Cytochrome C and Quinol oxidase polypeptide I M1S52_06830 PF06481 COX Aromatic Rich Motif M1S52_06830 PF00116 Cytochrome C oxidase subunit II, periplasmic domain M1S52_06840 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain M1S52_06840 PF02896 PEP-utilising enzyme, TIM barrel domain M1S52_06840 PF00391 PEP-utilising enzyme, mobile domain M1S52_06845 PF03618 Kinase/pyrophosphorylase M1S52_06855 PF01522 Polysaccharide deacetylase M1S52_06855 PF14883 Hypothetical glycosyl hydrolase family 13 M1S52_06860 PF00535 Glycosyl transferase family 2 M1S52_06865 PF13994 PgaD-like protein M1S52_06875 PF00296 Luciferase-like monooxygenase M1S52_06890 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M1S52_06890 PF03466 LysR substrate binding domain M1S52_06900 PF00472 RF-1 domain M1S52_06900 PF03462 PCRF domain M1S52_06905 PF17827 PrmC N-terminal domain M1S52_06905 PF13847 Methyltransferase domain M1S52_06910 PF00528 Binding-protein-dependent transport system inner membrane component M1S52_06915 PF09084 NMT1/THI5 like M1S52_06920 PF12833 Helix-turn-helix domain M1S52_06925 PF00106 short chain dehydrogenase M1S52_06930 PF02771 Acyl-CoA dehydrogenase, N-terminal domain M1S52_06930 PF02770 Acyl-CoA dehydrogenase, middle domain M1S52_06930 PF00441 Acyl-CoA dehydrogenase, C-terminal domain M1S52_06935 PF13193 AMP-binding enzyme C-terminal domain M1S52_06935 PF00501 AMP-binding enzyme M1S52_06940 PF01613 Flavin reductase like domain M1S52_06945 PF00899 ThiF family M1S52_06950 PF03109 ABC1 family M1S52_06965 PF03814 Potassium-transporting ATPase A subunit M1S52_06975 PF02669 K+-transporting ATPase, c chain M1S52_06980 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M1S52_06980 PF13493 Domain of unknown function (DUF4118) M1S52_06980 PF02702 Osmosensitive K+ channel His kinase sensor domain M1S52_06980 PF00512 His Kinase A (phospho-acceptor) domain M1S52_06985 PF00072 Response regulator receiver domain M1S52_06985 PF00486 Transcriptional regulatory protein, C terminal M1S52_06990 PF00120 Glutamine synthetase, catalytic domain M1S52_07000 PF03232 Ubiquinone biosynthesis protein COQ7 M1S52_07005 PF07690 Major Facilitator Superfamily M1S52_07010 PF01103 Surface antigen M1S52_07010 PF17243 POTRA domain TamA domain 1 M1S52_07010 PF07244 Surface antigen variable number repeat M1S52_07025 PF11791 Aconitate B N-terminal domain M1S52_07025 PF06434 Aconitate hydratase 2 N-terminus M1S52_07025 PF00330 Aconitase family (aconitate hydratase) M1S52_07035 PF00520 Ion transport protein M1S52_07035 PF00027 Cyclic nucleotide-binding domain M1S52_07040 PF07690 Major Facilitator Superfamily M1S52_07055 PF03466 LysR substrate binding domain M1S52_07055 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M1S52_07060 PF04284 Protein of unknown function (DUF441) M1S52_07070 PF01479 S4 domain M1S52_07070 PF00849 RNA pseudouridylate synthase M1S52_07085 PF01479 S4 domain M1S52_07085 PF00849 RNA pseudouridylate synthase M1S52_07090 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE M1S52_07095 PF08676 MutL C terminal dimerisation domain M1S52_07095 PF01119 DNA mismatch repair protein, C-terminal domain M1S52_07105 PF17209 Hfq protein M1S52_07115 PF00881 Nitroreductase family M1S52_07125 PF00149 Calcineurin-like phosphoesterase M1S52_07130 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD M1S52_07135 PF00749 tRNA synthetases class I (E and Q), catalytic domain M1S52_07135 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain M1S52_07140 PF00117 Glutamine amidotransferase class-I M1S52_07140 PF00958 GMP synthase C terminal domain M1S52_07140 PF02540 NAD synthase M1S52_07145 PF05985 Ethanolamine ammonia-lyase light chain (EutC) M1S52_07150 PF06751 Ethanolamine ammonia lyase large subunit (EutB) M1S52_07155 PF13520 Amino acid permease M1S52_07160 PF00171 Aldehyde dehydrogenase family M1S52_07180 PF14493 Helix-turn-helix domain M1S52_07180 PF05970 PIF1-like helicase M1S52_07205 PF02110 Hydroxyethylthiazole kinase family M1S52_07220 PF11940 Domain of unknown function (DUF3458) Ig-like fold M1S52_07220 PF17432 Domain of unknown function (DUF3458_C) ARM repeats M1S52_07220 PF01433 Peptidase family M1 domain M1S52_07230 PF00106 short chain dehydrogenase M1S52_07240 PF01817 Chorismate mutase type II M1S52_07245 PF01037 Lrp/AsnC ligand binding domain M1S52_07260 PF00440 Bacterial regulatory proteins, tetR family M1S52_07265 PF07715 TonB-dependent Receptor Plug Domain M1S52_07265 PF00593 TonB dependent receptor M1S52_07270 PF00924 Mechanosensitive ion channel M1S52_07305 PF00593 TonB dependent receptor M1S52_07305 PF07715 TonB-dependent Receptor Plug Domain M1S52_07325 PF00005 ABC transporter M1S52_07325 PF12848 ABC transporter M1S52_07330 PF00582 Universal stress protein family M1S52_07355 PF00689 Cation transporting ATPase, C-terminus M1S52_07355 PF00690 Cation transporter/ATPase, N-terminus M1S52_07360 PF02308 MgtC family M1S52_07365 PF03594 Benzoate membrane transport protein M1S52_07370 PF01037 Lrp/AsnC ligand binding domain M1S52_07375 PF01810 LysE type translocator M1S52_07380 PF00923 Transaldolase/Fructose-6-phosphate aldolase M1S52_07385 PF03466 LysR substrate binding domain M1S52_07385 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M1S52_07395 PF00108 Thiolase, N-terminal domain M1S52_07395 PF02803 Thiolase, C-terminal domain M1S52_07405 PF01575 MaoC like domain M1S52_07410 PF00144 Beta-lactamase M1S52_07420 PF07690 Major Facilitator Superfamily M1S52_07425 PF12168 DNA polymerase III subunits tau domain IV DnaB-binding M1S52_07425 PF12169 DNA polymerase III subunits gamma and tau domain III M1S52_07425 PF12170 DNA polymerase III tau subunit V interacting with alpha M1S52_07430 PF04185 Phosphoesterase family M1S52_07430 PF05506 Domain of unknown function (DUF756) M1S52_07435 PF03061 Thioesterase superfamily M1S52_07440 PF00465 Iron-containing alcohol dehydrogenase M1S52_07450 PF01451 Low molecular weight phosphotyrosine protein phosphatase M1S52_07455 PF01565 FAD binding domain M1S52_07455 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain M1S52_07470 PF01645 Conserved region in glutamate synthase M1S52_07575 PF01555 DNA methylase M1S52_07840 PF13276 HTH-like domain M1S52_07840 PF00665 Integrase core domain M1S52_07840 PF13333 Integrase core domain M1S52_07845 PF12832 MFS_1 like family M1S52_07855 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain M1S52_07855 PF00289 Biotin carboxylase, N-terminal domain M1S52_07855 PF02785 Biotin carboxylase C-terminal domain M1S52_07860 PF00364 Biotin-requiring enzyme M1S52_07865 PF01220 Dehydroquinase class II M1S52_07870 PF11799 impB/mucB/samB family C-terminal domain M1S52_07870 PF13438 Domain of unknown function (DUF4113) M1S52_07870 PF00817 impB/mucB/samB family M1S52_07885 PF00486 Transcriptional regulatory protein, C terminal M1S52_07885 PF00072 Response regulator receiver domain M1S52_07895 PF01077 Nitrite and sulphite reductase 4Fe-4S domain M1S52_07895 PF04324 BFD-like [2Fe-2S] binding domain M1S52_07895 PF07992 Pyridine nucleotide-disulphide oxidoreductase M1S52_07895 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain M1S52_07895 PF18267 Rubredoxin NAD+ reductase C-terminal domain M1S52_07895 PF13806 Rieske-like [2Fe-2S] domain M1S52_07900 PF04324 BFD-like [2Fe-2S] binding domain M1S52_07900 PF01077 Nitrite and sulphite reductase 4Fe-4S domain M1S52_07900 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain M1S52_07900 PF07992 Pyridine nucleotide-disulphide oxidoreductase M1S52_07900 PF18267 Rubredoxin NAD+ reductase C-terminal domain M1S52_07905 PF01568 Molydopterin dinucleotide binding domain M1S52_07905 PF04324 BFD-like [2Fe-2S] binding domain M1S52_07905 PF04879 Molybdopterin oxidoreductase Fe4S4 domain M1S52_07905 PF00384 Molybdopterin oxidoreductase M1S52_07910 PF12804 MobA-like NTP transferase domain M1S52_07915 PF04879 Molybdopterin oxidoreductase Fe4S4 domain M1S52_07915 PF00384 Molybdopterin oxidoreductase M1S52_07915 PF01568 Molydopterin dinucleotide binding domain M1S52_07920 PF06463 Molybdenum Cofactor Synthesis C M1S52_07920 PF04055 Radical SAM superfamily M1S52_07930 PF02391 MoaE protein M1S52_07935 PF00994 Probable molybdopterin binding domain M1S52_07935 PF01967 MoaC family M1S52_07940 PF03454 MoeA C-terminal region (domain IV) M1S52_07940 PF03453 MoeA N-terminal region (domain I and II) M1S52_07940 PF00994 Probable molybdopterin binding domain M1S52_07945 PF01638 HxlR-like helix-turn-helix M1S52_07950 PF00155 Aminotransferase class I and II M1S52_07950 PF00392 Bacterial regulatory proteins, gntR family M1S52_07955 PF00892 EamA-like transporter family M1S52_07975 PF02635 DsrE/DsrF-like family M1S52_07980 PF16363 GDP-mannose 4,6 dehydratase M1S52_07985 PF10415 Fumarase C C-terminus M1S52_07985 PF00206 Lyase M1S52_08005 PF01266 FAD dependent oxidoreductase M1S52_08015 PF02542 YgbB family M1S52_08025 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain M1S52_08025 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain M1S52_08030 PF00440 Bacterial regulatory proteins, tetR family M1S52_08035 PF02954 Bacterial regulatory protein, Fis family M1S52_08035 PF00072 Response regulator receiver domain M1S52_08035 PF00158 Sigma-54 interaction domain M1S52_08040 PF00512 His Kinase A (phospho-acceptor) domain M1S52_08040 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M1S52_08040 PF00989 PAS fold M1S52_08045 PF00919 Uncharacterized protein family UPF0004 M1S52_08045 PF18693 TRAM domain M1S52_08045 PF04055 Radical SAM superfamily M1S52_08050 PF00696 Amino acid kinase family M1S52_08055 PF01765 Ribosome recycling factor M1S52_08060 PF01255 Putative undecaprenyl diphosphate synthase M1S52_08070 PF13288 DXP reductoisomerase C-terminal domain M1S52_08070 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase M1S52_08070 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain M1S52_08075 PF13180 PDZ domain M1S52_08075 PF02163 Peptidase family M50 M1S52_08075 PF17820 PDZ domain M1S52_08080 PF01103 Surface antigen M1S52_08080 PF07244 Surface antigen variable number repeat M1S52_08090 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD M1S52_08090 PF00132 Bacterial transferase hexapeptide (six repeats) M1S52_08095 PF07977 FabA-like domain M1S52_08100 PF00132 Bacterial transferase hexapeptide (six repeats) M1S52_08100 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 M1S52_08115 PF02631 RecX family M1S52_08120 PF00154 recA bacterial DNA recombination protein M1S52_08125 PF01479 S4 domain M1S52_08130 PF13419 Haloacid dehalogenase-like hydrolase M1S52_08155 PF01037 Lrp/AsnC ligand binding domain M1S52_08160 PF00266 Aminotransferase class-V M1S52_08165 PF00324 Amino acid permease M1S52_08180 PF00082 Subtilase family M1S52_08180 PF05922 Peptidase inhibitor I9 M1S52_08185 PF00916 Sulfate permease family M1S52_08185 PF01740 STAS domain M1S52_08190 PF02586 SOS response associated peptidase (SRAP) M1S52_08195 PF07995 Glucose / Sorbosone dehydrogenase M1S52_08205 PF00563 EAL domain M1S52_08205 PF00990 Diguanylate cyclase, GGDEF domain M1S52_08205 PF03707 Bacterial signalling protein N terminal repeat M1S52_08225 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit M1S52_08225 PF02378 Phosphotransferase system, EIIC M1S52_08230 PF00294 pfkB family carbohydrate kinase M1S52_08235 PF00391 PEP-utilising enzyme, mobile domain M1S52_08235 PF05524 PEP-utilising enzyme, N-terminal M1S52_08235 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 M1S52_08235 PF00381 PTS HPr component phosphorylation site M1S52_08235 PF02896 PEP-utilising enzyme, TIM barrel domain M1S52_08260 PF05525 Branched-chain amino acid transport protein M1S52_08265 PF00557 Metallopeptidase family M24 M1S52_08270 PF03466 LysR substrate binding domain M1S52_08270 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M1S52_08280 PF00462 Glutaredoxin M1S52_08285 PF00202 Aminotransferase class-III M1S52_08290 PF00478 IMP dehydrogenase / GMP reductase domain M1S52_08290 PF00571 CBS domain M1S52_08315 PF02881 SRP54-type protein, helical bundle domain M1S52_08315 PF00448 SRP54-type protein, GTPase domain M1S52_08325 PF09829 Uncharacterized protein conserved in bacteria (DUF2057) M1S52_08340 PF08173 Membrane bound YbgT-like protein M1S52_08345 PF02322 Cytochrome bd terminal oxidase subunit II M1S52_08350 PF01654 Cytochrome bd terminal oxidase subunit I M1S52_08360 PF07290 Protein of unknown function (DUF1449) M1S52_08370 PF00294 pfkB family carbohydrate kinase M1S52_08375 PF07715 TonB-dependent Receptor Plug Domain M1S52_08375 PF00593 TonB dependent receptor M1S52_08380 PF00675 Insulinase (Peptidase family M16) M1S52_08380 PF05193 Peptidase M16 inactive domain M1S52_08380 PF08367 Peptidase M16C associated M1S52_08385 PF02253 Phospholipase A1 M1S52_08390 PF02386 Cation transport protein M1S52_08395 PF02080 TrkA-C domain M1S52_08395 PF02254 TrkA-N domain M1S52_08400 PF00291 Pyridoxal-phosphate dependent enzyme M1S52_08400 PF00585 C-terminal regulatory domain of Threonine dehydratase M1S52_08405 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) M1S52_08420 PF01118 Semialdehyde dehydrogenase, NAD binding domain M1S52_08420 PF02774 Semialdehyde dehydrogenase, dimerisation domain M1S52_08430 PF02617 ATP-dependent Clp protease adaptor protein ClpS M1S52_08435 PF00004 ATPase family associated with various cellular activities (AAA) M1S52_08435 PF07724 AAA domain (Cdc48 subfamily) M1S52_08435 PF10431 C-terminal, D2-small domain, of ClpB protein M1S52_08435 PF17871 AAA lid domain M1S52_08435 PF02861 Clp amino terminal domain, pathogenicity island component M1S52_08440 PF02694 Uncharacterised BCR, YnfA/UPF0060 family M1S52_08445 PF00793 DAHP synthetase I family M1S52_08460 PF00724 NADH:flavin oxidoreductase / NADH oxidase family M1S52_08460 PF07992 Pyridine nucleotide-disulphide oxidoreductase M1S52_08490 PF00117 Glutamine amidotransferase class-I M1S52_08490 PF06418 CTP synthase N-terminus M1S52_08495 PF00793 DAHP synthetase I family M1S52_08500 PF00113 Enolase, C-terminal TIM barrel domain M1S52_08500 PF03952 Enolase, N-terminal domain M1S52_08505 PF04239 Protein of unknown function (DUF421) M1S52_08510 PF04977 Septum formation initiator M1S52_08515 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase M1S52_08520 PF01144 Coenzyme A transferase M1S52_08525 PF01144 Coenzyme A transferase M1S52_08530 PF02803 Thiolase, C-terminal domain M1S52_08530 PF00108 Thiolase, N-terminal domain M1S52_08535 PF10397 Adenylosuccinate lyase C-terminus M1S52_08535 PF00206 Lyase M1S52_08540 PF00561 alpha/beta hydrolase fold M1S52_08545 PF07690 Major Facilitator Superfamily M1S52_08550 PF02627 Carboxymuconolactone decarboxylase family M1S52_08555 PF12391 Protocatechuate 3,4-dioxygenase beta subunit N terminal M1S52_08555 PF00775 Dioxygenase M1S52_08560 PF00775 Dioxygenase M1S52_08565 PF01487 Type I 3-dehydroquinase M1S52_08570 PF05048 Periplasmic copper-binding protein (NosD) M1S52_08575 PF04966 Carbohydrate-selective porin, OprB family M1S52_08580 PF01011 PQQ enzyme repeat M1S52_08580 PF13360 PQQ-like domain M1S52_08590 PF04143 Sulphur transport M1S52_08600 PF00753 Metallo-beta-lactamase superfamily M1S52_08605 PF01614 Bacterial transcriptional regulator M1S52_08605 PF09339 IclR helix-turn-helix domain M1S52_08610 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M1S52_08610 PF03466 LysR substrate binding domain M1S52_08615 PF00441 Acyl-CoA dehydrogenase, C-terminal domain M1S52_08615 PF02770 Acyl-CoA dehydrogenase, middle domain M1S52_08615 PF02771 Acyl-CoA dehydrogenase, N-terminal domain M1S52_08630 PF00106 short chain dehydrogenase M1S52_08640 PF07690 Major Facilitator Superfamily M1S52_08650 PF01425 Amidase M1S52_08655 PF08028 Acyl-CoA dehydrogenase, C-terminal domain M1S52_08670 PF00355 Rieske [2Fe-2S] domain M1S52_08670 PF00848 Ring hydroxylating alpha subunit (catalytic domain) M1S52_08685 PF00111 2Fe-2S iron-sulfur cluster binding domain M1S52_08685 PF00175 Oxidoreductase NAD-binding domain M1S52_08690 PF01613 Flavin reductase like domain M1S52_08695 PF02311 AraC-like ligand binding domain M1S52_08695 PF12833 Helix-turn-helix domain M1S52_08700 PF02728 Copper amine oxidase, N3 domain M1S52_08700 PF07833 Copper amine oxidase N-terminal domain M1S52_08700 PF01179 Copper amine oxidase, enzyme domain M1S52_08700 PF02727 Copper amine oxidase, N2 domain M1S52_08710 PF00171 Aldehyde dehydrogenase family M1S52_08715 PF01804 Penicillin amidase M1S52_08720 PF12146 Serine aminopeptidase, S33 M1S52_08725 PF00108 Thiolase, N-terminal domain M1S52_08725 PF02803 Thiolase, C-terminal domain M1S52_08730 PF01144 Coenzyme A transferase M1S52_08735 PF01144 Coenzyme A transferase M1S52_08740 PF04444 Catechol dioxygenase N terminus M1S52_08740 PF00775 Dioxygenase M1S52_08745 PF02426 Muconolactone delta-isomerase M1S52_08750 PF13378 Enolase C-terminal domain-like M1S52_08750 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain M1S52_08765 PF00392 Bacterial regulatory proteins, gntR family M1S52_08765 PF07729 FCD domain M1S52_08770 PF00920 Dehydratase family M1S52_08775 PF07690 Major Facilitator Superfamily M1S52_08785 PF00171 Aldehyde dehydrogenase family M1S52_08805 PF00441 Acyl-CoA dehydrogenase, C-terminal domain M1S52_08805 PF02770 Acyl-CoA dehydrogenase, middle domain M1S52_08805 PF02771 Acyl-CoA dehydrogenase, N-terminal domain M1S52_08815 PF06506 Propionate catabolism activator M1S52_08815 PF02954 Bacterial regulatory protein, Fis family M1S52_08815 PF00158 Sigma-54 interaction domain M1S52_08820 PF00501 AMP-binding enzyme M1S52_08820 PF13193 AMP-binding enzyme C-terminal domain M1S52_08825 PF04341 Protein of unknown function, DUF485 M1S52_08830 PF00474 Sodium:solute symporter family M1S52_08835 PF08240 Alcohol dehydrogenase GroES-like domain M1S52_08835 PF00107 Zinc-binding dehydrogenase M1S52_08840 PF00171 Aldehyde dehydrogenase family M1S52_08850 PF00561 alpha/beta hydrolase fold M1S52_08855 PF06628 Catalase-related immune-responsive M1S52_08855 PF00199 Catalase M1S52_08870 PF07859 alpha/beta hydrolase fold M1S52_08875 PF01047 MarR family M1S52_08880 PF00724 NADH:flavin oxidoreductase / NADH oxidase family M1S52_08880 PF07992 Pyridine nucleotide-disulphide oxidoreductase M1S52_08885 PF00106 short chain dehydrogenase M1S52_08890 PF01872 RibD C-terminal domain M1S52_08895 PF00376 MerR family regulatory protein M1S52_08895 PF09278 MerR, DNA binding M1S52_08905 PF07992 Pyridine nucleotide-disulphide oxidoreductase M1S52_08915 PF12706 Beta-lactamase superfamily domain M1S52_08920 PF00440 Bacterial regulatory proteins, tetR family M1S52_08920 PF08359 YsiA-like protein, C-terminal region M1S52_08930 PF00857 Isochorismatase family M1S52_08935 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M1S52_08935 PF03466 LysR substrate binding domain M1S52_08940 PF07995 Glucose / Sorbosone dehydrogenase M1S52_08945 PF00999 Sodium/hydrogen exchanger family M1S52_08945 PF02254 TrkA-N domain M1S52_08955 PF07687 Peptidase dimerisation domain M1S52_08955 PF01546 Peptidase family M20/M25/M40 M1S52_08965 PF08479 POTRA domain, ShlB-type M1S52_08965 PF17287 POTRA domain M1S52_08965 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB M1S52_08985 PF07690 Major Facilitator Superfamily M1S52_08990 PF04909 Amidohydrolase M1S52_09000 PF00392 Bacterial regulatory proteins, gntR family M1S52_09000 PF07702 UTRA domain M1S52_09005 PF08450 SMP-30/Gluconolactonase/LRE-like region M1S52_09015 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M1S52_09015 PF03466 LysR substrate binding domain M1S52_09035 PF07690 Major Facilitator Superfamily M1S52_09040 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain M1S52_09040 PF01842 ACT domain M1S52_09040 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain M1S52_09045 PF03737 Aldolase/RraA M1S52_09075 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion M1S52_09075 PF00529 HlyD membrane-fusion protein of T1SS M1S52_09090 PF00171 Aldehyde dehydrogenase family M1S52_09095 PF00920 Dehydratase family M1S52_09105 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M1S52_09105 PF03466 LysR substrate binding domain M1S52_09110 PF01370 NAD dependent epimerase/dehydratase family M1S52_09115 PF07690 Major Facilitator Superfamily M1S52_09120 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase M1S52_09120 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase M1S52_09125 PF12833 Helix-turn-helix domain M1S52_09125 PF06719 AraC-type transcriptional regulator N-terminus M1S52_09140 PF08240 Alcohol dehydrogenase GroES-like domain M1S52_09140 PF00107 Zinc-binding dehydrogenase M1S52_09150 PF01032 FecCD transport family M1S52_09155 PF00005 ABC transporter M1S52_09175 PF14572 Phosphoribosyl synthetase-associated domain M1S52_09175 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase M1S52_09180 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family M1S52_09255 PF00196 Bacterial regulatory proteins, luxR family M1S52_09260 PF01425 Amidase M1S52_09265 PF13533 Biotin-lipoyl like M1S52_09270 PF07690 Major Facilitator Superfamily M1S52_09295 PF01975 Survival protein SurE M1S52_09305 PF02824 TGS domain M1S52_09305 PF13291 ACT domain M1S52_09305 PF04607 Region found in RelA / SpoT proteins M1S52_09355 PF12146 Serine aminopeptidase, S33 M1S52_09360 PF02311 AraC-like ligand binding domain M1S52_09360 PF12833 Helix-turn-helix domain M1S52_09370 PF00672 HAMP domain M1S52_09370 PF16527 Two-component sensor protein CpxA, periplasmic domain M1S52_09370 PF00512 His Kinase A (phospho-acceptor) domain M1S52_09370 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M1S52_09375 PF00072 Response regulator receiver domain M1S52_09375 PF00486 Transcriptional regulatory protein, C terminal M1S52_09380 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion M1S52_09380 PF00529 HlyD membrane-fusion protein of T1SS M1S52_09385 PF00873 AcrB/AcrD/AcrF family M1S52_09390 PF02321 Outer membrane efflux protein M1S52_09395 PF12146 Serine aminopeptidase, S33 M1S52_09400 PF00743 Flavin-binding monooxygenase-like M1S52_09405 PF01593 Flavin containing amine oxidoreductase M1S52_09420 PF01266 FAD dependent oxidoreductase M1S52_09440 PF16970 Type-1 fimbrial protein, A M1S52_09450 PF02753 Pili assembly chaperone PapD, C-terminal domain M1S52_09450 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain M1S52_09455 PF00577 Outer membrane usher protein M1S52_09455 PF13953 PapC C-terminal domain M1S52_09455 PF13954 PapC N-terminal domain M1S52_09460 PF00419 Fimbrial protein M1S52_09470 PF00107 Zinc-binding dehydrogenase M1S52_09470 PF08240 Alcohol dehydrogenase GroES-like domain M1S52_09480 PF00199 Catalase M1S52_09495 PF13091 PLD-like domain M1S52_09510 PF01244 Membrane dipeptidase (Peptidase family M19) M1S52_09520 PF05402 Coenzyme PQQ synthesis protein D (PqqD) M1S52_09525 PF03070 TENA/THI-4/PQQC family M1S52_09530 PF12706 Beta-lactamase superfamily domain M1S52_09535 PF08042 PqqA family M1S52_09540 PF13089 Polyphosphate kinase N-terminal domain M1S52_09540 PF13090 Polyphosphate kinase C-terminal domain 2 M1S52_09540 PF02503 Polyphosphate kinase middle domain M1S52_09540 PF17941 Polyphosphate kinase C-terminal domain 1 M1S52_09545 PF00149 Calcineurin-like phosphoesterase M1S52_09555 PF00857 Isochorismatase family M1S52_09555 PF00550 Phosphopantetheine attachment site M1S52_09560 PF00106 short chain dehydrogenase M1S52_09565 PF00005 ABC transporter M1S52_09565 PF03459 TOBE domain M1S52_09570 PF00528 Binding-protein-dependent transport system inner membrane component M1S52_09580 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M1S52_09580 PF03459 TOBE domain M1S52_09585 PF00355 Rieske [2Fe-2S] domain M1S52_09585 PF00848 Ring hydroxylating alpha subunit (catalytic domain) M1S52_09590 PF00866 Ring hydroxylating beta subunit M1S52_09595 PF00175 Oxidoreductase NAD-binding domain M1S52_09595 PF00970 Oxidoreductase FAD-binding domain M1S52_09595 PF00111 2Fe-2S iron-sulfur cluster binding domain M1S52_09600 PF14525 AraC-binding-like domain M1S52_09600 PF12833 Helix-turn-helix domain M1S52_09610 PF01613 Flavin reductase like domain M1S52_09625 PF01738 Dienelactone hydrolase family M1S52_09630 PF07690 Major Facilitator Superfamily M1S52_09635 PF06719 AraC-type transcriptional regulator N-terminus M1S52_09635 PF12833 Helix-turn-helix domain M1S52_09660 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M1S52_09660 PF03466 LysR substrate binding domain M1S52_09665 PF01144 Coenzyme A transferase M1S52_09670 PF01144 Coenzyme A transferase M1S52_09675 PF02667 Short chain fatty acid transporter M1S52_09680 PF02803 Thiolase, C-terminal domain M1S52_09680 PF00108 Thiolase, N-terminal domain M1S52_09685 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M1S52_09685 PF03466 LysR substrate binding domain M1S52_09690 PF03466 LysR substrate binding domain M1S52_09690 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M1S52_09705 PF10415 Fumarase C C-terminus M1S52_09705 PF00206 Lyase M1S52_09710 PF00593 TonB dependent receptor M1S52_09710 PF07715 TonB-dependent Receptor Plug Domain M1S52_09715 PF00083 Sugar (and other) transporter M1S52_09730 PF00005 ABC transporter M1S52_09735 PF00528 Binding-protein-dependent transport system inner membrane component M1S52_09740 PF04069 Substrate binding domain of ABC-type glycine betaine transport system M1S52_09755 PF07702 UTRA domain M1S52_09755 PF00392 Bacterial regulatory proteins, gntR family M1S52_09765 PF02525 Flavodoxin-like fold M1S52_09770 PF01638 HxlR-like helix-turn-helix M1S52_09775 PF06445 GyrI-like small molecule binding domain M1S52_09775 PF12833 Helix-turn-helix domain M1S52_09790 PF01925 Sulfite exporter TauE/SafE M1S52_09805 PF00753 Metallo-beta-lactamase superfamily M1S52_09805 PF04273 Putative phosphatase (DUF442) M1S52_09810 PF02954 Bacterial regulatory protein, Fis family M1S52_09810 PF00072 Response regulator receiver domain M1S52_09810 PF00158 Sigma-54 interaction domain M1S52_09815 PF01062 Bestrophin, RFP-TM, chloride channel M1S52_09820 PF00107 Zinc-binding dehydrogenase M1S52_09820 PF08240 Alcohol dehydrogenase GroES-like domain M1S52_09825 PF00106 short chain dehydrogenase M1S52_09830 PF07992 Pyridine nucleotide-disulphide oxidoreductase M1S52_09830 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain M1S52_09835 PF02817 e3 binding domain M1S52_09835 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) M1S52_09835 PF00364 Biotin-requiring enzyme M1S52_09840 PF02779 Transketolase, pyrimidine binding domain M1S52_09840 PF02780 Transketolase, C-terminal domain M1S52_09845 PF00676 Dehydrogenase E1 component M1S52_09850 PF04055 Radical SAM superfamily M1S52_09865 PF08448 PAS fold M1S52_09865 PF00990 Diguanylate cyclase, GGDEF domain M1S52_09870 PF01264 Chorismate synthase M1S52_09875 PF05175 Methyltransferase small domain M1S52_09880 PF00291 Pyridoxal-phosphate dependent enzyme M1S52_09890 PF01434 Peptidase family M41 M1S52_09890 PF17862 AAA+ lid domain M1S52_09890 PF00004 ATPase family associated with various cellular activities (AAA) M1S52_09900 PF05166 YcgL domain M1S52_09920 PF01612 3'-5' exonuclease M1S52_09920 PF00570 HRDC domain M1S52_09925 PF02132 RecR protein M1S52_09925 PF13662 Toprim domain M1S52_09930 PF02575 YbaB/EbfC DNA-binding family M1S52_09940 PF01053 Cys/Met metabolism PLP-dependent enzyme M1S52_09945 PF00561 alpha/beta hydrolase fold M1S52_09950 PF08241 Methyltransferase domain M1S52_09980 PF01230 HIT domain M1S52_10015 PF00005 ABC transporter M1S52_10020 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion M1S52_10030 PF02684 Lipid-A-disaccharide synthetase M1S52_10035 PF00593 TonB dependent receptor M1S52_10035 PF07715 TonB-dependent Receptor Plug Domain M1S52_10055 PF01925 Sulfite exporter TauE/SafE M1S52_10060 PF00793 DAHP synthetase I family M1S52_10065 PF02654 Cobalamin-5-phosphate synthase M1S52_10080 PF02277 Phosphoribosyltransferase M1S52_10085 PF02283 Cobinamide kinase / cobinamide phosphate guanyltransferase M1S52_10095 PF13419 Haloacid dehalogenase-like hydrolase M1S52_10120 PF07715 TonB-dependent Receptor Plug Domain M1S52_10120 PF00593 TonB dependent receptor M1S52_10150 PF00665 Integrase core domain M1S52_10180 PF00582 Universal stress protein family M1S52_10185 PF00916 Sulfate permease family M1S52_10185 PF01740 STAS domain M1S52_10200 PF04183 IucA / IucC family M1S52_10200 PF06276 Ferric iron reductase FhuF-like transporter M1S52_10210 PF07690 Major Facilitator Superfamily M1S52_10215 PF13434 L-lysine 6-monooxygenase (NADPH-requiring) M1S52_10220 PF04183 IucA / IucC family M1S52_10220 PF06276 Ferric iron reductase FhuF-like transporter M1S52_10225 PF04073 Aminoacyl-tRNA editing domain M1S52_10235 PF03109 ABC1 family M1S52_10240 PF02771 Acyl-CoA dehydrogenase, N-terminal domain M1S52_10240 PF00441 Acyl-CoA dehydrogenase, C-terminal domain M1S52_10240 PF02770 Acyl-CoA dehydrogenase, middle domain M1S52_10245 PF00441 Acyl-CoA dehydrogenase, C-terminal domain M1S52_10245 PF02770 Acyl-CoA dehydrogenase, middle domain M1S52_10245 PF02771 Acyl-CoA dehydrogenase, N-terminal domain M1S52_10250 PF00487 Fatty acid desaturase M1S52_10255 PF12852 Cupin M1S52_10255 PF12833 Helix-turn-helix domain M1S52_10260 PF00639 PPIC-type PPIASE domain M1S52_10260 PF09312 SurA N-terminal domain M1S52_10265 PF00216 Bacterial DNA-binding protein M1S52_10280 PF02082 Transcriptional regulator M1S52_10285 PF00266 Aminotransferase class-V M1S52_10290 PF01592 NifU-like N terminal domain M1S52_10295 PF01521 Iron-sulphur cluster biosynthesis M1S52_10300 PF00226 DnaJ domain M1S52_10300 PF07743 HSCB C-terminal oligomerisation domain M1S52_10305 PF00012 Hsp70 protein M1S52_10310 PF00111 2Fe-2S iron-sulfur cluster binding domain M1S52_10315 PF00211 Adenylate and Guanylate cyclase catalytic domain M1S52_10325 PF17757 UvrB interaction domain M1S52_10325 PF03461 TRCF domain M1S52_10325 PF00271 Helicase conserved C-terminal domain M1S52_10325 PF00270 DEAD/DEAH box helicase M1S52_10325 PF02559 CarD-like/TRCF domain M1S52_10345 PF03737 Aldolase/RraA M1S52_10350 PF13460 NAD(P)H-binding M1S52_10355 PF01649 Ribosomal protein S20 M1S52_10365 PF00459 Inositol monophosphatase family M1S52_10380 PF08352 Oligopeptide/dipeptide transporter, C-terminal region M1S52_10380 PF00005 ABC transporter M1S52_10385 PF00528 Binding-protein-dependent transport system inner membrane component M1S52_10390 PF00528 Binding-protein-dependent transport system inner membrane component M1S52_10395 PF01432 Peptidase family M3 M1S52_10415 PF07715 TonB-dependent Receptor Plug Domain M1S52_10415 PF00593 TonB dependent receptor M1S52_10425 PF01618 MotA/TolQ/ExbB proton channel family M1S52_10430 PF02472 Biopolymer transport protein ExbD/TolR M1S52_10435 PF02472 Biopolymer transport protein ExbD/TolR M1S52_10445 PF01274 Malate synthase M1S52_10450 PF01274 Malate synthase M1S52_10455 PF03969 AFG1-like ATPase M1S52_10465 PF00743 Flavin-binding monooxygenase-like M1S52_10475 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family M1S52_10485 PF00216 Bacterial DNA-binding protein M1S52_10490 PF00575 S1 RNA binding domain M1S52_10495 PF02224 Cytidylate kinase M1S52_10505 PF14437 MafB19-like deaminase M1S52_10515 PF03167 Uracil DNA glycosylase superfamily M1S52_10525 PF03934 Type II secretion system (T2SS), protein K M1S52_10530 PF07963 Prokaryotic N-terminal methylation motif M1S52_10530 PF11612 Type II secretion system (T2SS), protein J M1S52_10535 PF07963 Prokaryotic N-terminal methylation motif M1S52_10535 PF02501 Type II secretion system (T2SS), protein I M1S52_10550 PF01026 TatD related DNase M1S52_10560 PF09115 DNA polymerase III, delta subunit, C terminal M1S52_10565 PF02348 Cytidylyltransferase M1S52_10570 PF02606 Tetraacyldisaccharide-1-P 4'-kinase M1S52_10575 PF00664 ABC transporter transmembrane region M1S52_10575 PF00005 ABC transporter M1S52_10585 PF01618 MotA/TolQ/ExbB proton channel family M1S52_10590 PF17762 HTH domain found in ParB protein M1S52_10590 PF02195 ParB-like nuclease domain M1S52_10595 PF13614 AAA domain M1S52_10600 PF02527 rRNA small subunit methyltransferase G M1S52_10605 PF00483 Nucleotidyl transferase M1S52_10610 PF01636 Phosphotransferase enzyme family M1S52_10615 PF04453 LPS transport system D M1S52_10615 PF03968 OstA-like protein M1S52_10620 PF00639 PPIC-type PPIASE domain M1S52_10620 PF09312 SurA N-terminal domain M1S52_10625 PF01116 Fructose-bisphosphate aldolase class-II M1S52_10635 PF00162 Phosphoglycerate kinase M1S52_10645 PF02545 Maf-like protein M1S52_10650 PF08007 Cupin superfamily protein M1S52_10665 PF00375 Sodium:dicarboxylate symporter family M1S52_10670 PF06912 Protein of unknown function (DUF1275) M1S52_10675 PF09831 Uncharacterized protein conserved in bacteria (DUF2058) M1S52_10680 PF00005 ABC transporter M1S52_10680 PF00664 ABC transporter transmembrane region M1S52_10690 PF12833 Helix-turn-helix domain M1S52_10690 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term M1S52_10695 PF01597 Glycine cleavage H-protein M1S52_10700 PF02146 Sir2 family M1S52_10705 PF00474 Sodium:solute symporter family M1S52_10710 PF01037 Lrp/AsnC ligand binding domain M1S52_10715 PF00171 Aldehyde dehydrogenase family M1S52_10715 PF01619 Proline dehydrogenase M1S52_10715 PF14850 DNA-binding domain of Proline dehydrogenase M1S52_10715 PF18327 Proline utilization A proline dehydrogenase N-terminal domain M1S52_10720 PF04229 GrpB protein M1S52_10725 PF05958 tRNA (Uracil-5-)-methyltransferase M1S52_10735 PF09992 Phosphodiester glycosidase M1S52_10745 PF04264 YceI-like domain M1S52_10755 PF02780 Transketolase, C-terminal domain M1S52_10755 PF02779 Transketolase, pyrimidine binding domain M1S52_10755 PF00456 Transketolase, thiamine diphosphate binding domain M1S52_10760 PF02773 S-adenosylmethionine synthetase, C-terminal domain M1S52_10760 PF02772 S-adenosylmethionine synthetase, central domain M1S52_10760 PF00438 S-adenosylmethionine synthetase, N-terminal domain M1S52_10785 PF00905 Penicillin binding protein transpeptidase domain M1S52_10800 PF02075 Crossover junction endodeoxyribonuclease RuvC M1S52_10805 PF01256 Carbohydrate kinase M1S52_10805 PF03853 YjeF-related protein N-terminus M1S52_10810 PF08331 Domain of unknown function (DUF1730) M1S52_10815 PF06968 Biotin and Thiamin Synthesis associated domain M1S52_10815 PF04055 Radical SAM superfamily M1S52_10830 PF16970 Type-1 fimbrial protein, A M1S52_10835 PF02753 Pili assembly chaperone PapD, C-terminal domain M1S52_10835 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain M1S52_10840 PF13953 PapC C-terminal domain M1S52_10840 PF00577 Outer membrane usher protein M1S52_10840 PF13954 PapC N-terminal domain M1S52_10860 PF00892 EamA-like transporter family M1S52_10870 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin M1S52_10880 PF03466 LysR substrate binding domain M1S52_10880 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M1S52_10900 PF00440 Bacterial regulatory proteins, tetR family M1S52_10910 PF01709 Transcriptional regulator M1S52_10915 PF01037 Lrp/AsnC ligand binding domain M1S52_10925 PF00005 ABC transporter M1S52_10930 PF00528 Binding-protein-dependent transport system inner membrane component M1S52_10935 PF00528 Binding-protein-dependent transport system inner membrane component M1S52_10950 PF08028 Acyl-CoA dehydrogenase, C-terminal domain M1S52_10950 PF02771 Acyl-CoA dehydrogenase, N-terminal domain M1S52_10960 PF00296 Luciferase-like monooxygenase M1S52_10965 PF03180 NLPA lipoprotein M1S52_10970 PF03180 NLPA lipoprotein M1S52_10975 PF00005 ABC transporter M1S52_10975 PF09383 NIL domain M1S52_10980 PF00528 Binding-protein-dependent transport system inner membrane component M1S52_10985 PF01926 50S ribosome-binding GTPase M1S52_10985 PF06071 Protein of unknown function (DUF933) M1S52_11010 PF03591 AzlC protein M1S52_11015 PF05437 Branched-chain amino acid transport protein (AzlD) M1S52_11025 PF02222 ATP-grasp domain M1S52_11030 PF01909 Nucleotidyltransferase domain M1S52_11030 PF01966 HD domain M1S52_11030 PF08335 GlnD PII-uridylyltransferase M1S52_11035 PF00155 Aminotransferase class I and II M1S52_11045 PF12833 Helix-turn-helix domain M1S52_11045 PF12852 Cupin M1S52_11050 PF00255 Glutathione peroxidase M1S52_11055 PF01641 SelR domain M1S52_11060 PF00155 Aminotransferase class I and II M1S52_11065 PF00375 Sodium:dicarboxylate symporter family M1S52_11070 PF00710 Asparaginase, N-terminal M1S52_11070 PF17763 Glutaminase/Asparaginase C-terminal domain M1S52_11075 PF07733 Bacterial DNA polymerase III alpha NTPase domain M1S52_11075 PF17657 Bacterial DNA polymerase III alpha subunit finger domain M1S52_11075 PF14579 Helix-hairpin-helix motif M1S52_11075 PF02811 PHP domain M1S52_11075 PF01336 OB-fold nucleic acid binding domain M1S52_11080 PF00588 SpoU rRNA Methylase family M1S52_11085 PF00132 Bacterial transferase hexapeptide (six repeats) M1S52_11100 PF13192 Thioredoxin domain M1S52_11100 PF07992 Pyridine nucleotide-disulphide oxidoreductase M1S52_11115 PF03466 LysR substrate binding domain M1S52_11115 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M1S52_11120 PF01758 Sodium Bile acid symporter family M1S52_11125 PF01022 Bacterial regulatory protein, arsR family M1S52_11130 PF03960 ArsC family M1S52_11140 PF13382 Adenine deaminase C-terminal domain M1S52_11140 PF01979 Amidohydrolase family M1S52_11150 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M1S52_11150 PF03466 LysR substrate binding domain M1S52_11160 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin M1S52_11165 PF01177 Asp/Glu/Hydantoin racemase M1S52_11170 PF02668 Taurine catabolism dioxygenase TauD, TfdA family M1S52_11175 PF00528 Binding-protein-dependent transport system inner membrane component M1S52_11180 PF00005 ABC transporter M1S52_11185 PF04069 Substrate binding domain of ABC-type glycine betaine transport system M1S52_11195 PF00083 Sugar (and other) transporter M1S52_11200 PF00296 Luciferase-like monooxygenase M1S52_11205 PF08028 Acyl-CoA dehydrogenase, C-terminal domain M1S52_11205 PF02770 Acyl-CoA dehydrogenase, middle domain M1S52_11205 PF02771 Acyl-CoA dehydrogenase, N-terminal domain M1S52_11220 PF01654 Cytochrome bd terminal oxidase subunit I M1S52_11225 PF02322 Cytochrome bd terminal oxidase subunit II M1S52_11235 PF00392 Bacterial regulatory proteins, gntR family M1S52_11235 PF00155 Aminotransferase class I and II M1S52_11240 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M1S52_11240 PF03466 LysR substrate binding domain M1S52_11255 PF00698 Acyl transferase domain M1S52_11260 PF10620 Phosphoribosyl-dephospho-CoA transferase MdcG M1S52_11270 PF01039 Carboxyl transferase domain M1S52_11275 PF06857 Malonate decarboxylase delta subunit (MdcD) M1S52_11280 PF01874 ATP:dephospho-CoA triphosphoribosyl transferase M1S52_11285 PF16957 Malonate decarboxylase, alpha subunit, transporter M1S52_11290 PF07690 Major Facilitator Superfamily M1S52_11305 PF00155 Aminotransferase class I and II M1S52_11305 PF00392 Bacterial regulatory proteins, gntR family M1S52_11310 PF04172 LrgB-like family M1S52_11315 PF03788 LrgA family M1S52_11325 PF14834 Glutathione S-transferase, C-terminal domain M1S52_11325 PF02798 Glutathione S-transferase, N-terminal domain M1S52_11330 PF02798 Glutathione S-transferase, N-terminal domain M1S52_11335 PF03466 LysR substrate binding domain M1S52_11335 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M1S52_11345 PF00581 Rhodanese-like domain M1S52_11350 PF00132 Bacterial transferase hexapeptide (six repeats) M1S52_11360 PF00266 Aminotransferase class-V M1S52_11370 PF01810 LysE type translocator M1S52_11375 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M1S52_11375 PF03466 LysR substrate binding domain M1S52_11385 PF00497 Bacterial extracellular solute-binding proteins, family 3 M1S52_11390 PF00497 Bacterial extracellular solute-binding proteins, family 3 M1S52_11395 PF00005 ABC transporter M1S52_11400 PF00528 Binding-protein-dependent transport system inner membrane component M1S52_11405 PF00528 Binding-protein-dependent transport system inner membrane component M1S52_11420 PF00072 Response regulator receiver domain M1S52_11425 PF00072 Response regulator receiver domain M1S52_11425 PF09308 LuxQ, periplasmic M1S52_11425 PF00512 His Kinase A (phospho-acceptor) domain M1S52_11425 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M1S52_11435 PF13404 AsnC-type helix-turn-helix domain M1S52_11435 PF01037 Lrp/AsnC ligand binding domain M1S52_11445 PF00717 Peptidase S24-like M1S52_11470 PF18011 C-terminal domain found in long catalases M1S52_11470 PF06628 Catalase-related immune-responsive M1S52_11470 PF00199 Catalase M1S52_11480 PF00994 Probable molybdopterin binding domain M1S52_11480 PF02464 Competence-damaged protein M1S52_11480 PF18146 Damage-inducible protein CinA KH domain M1S52_11515 PF03466 LysR substrate binding domain M1S52_11515 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M1S52_11535 PF13193 AMP-binding enzyme C-terminal domain M1S52_11535 PF00501 AMP-binding enzyme M1S52_11540 PF00440 Bacterial regulatory proteins, tetR family M1S52_11545 PF00441 Acyl-CoA dehydrogenase, C-terminal domain M1S52_11545 PF02770 Acyl-CoA dehydrogenase, middle domain M1S52_11545 PF02771 Acyl-CoA dehydrogenase, N-terminal domain M1S52_11550 PF01039 Carboxyl transferase domain M1S52_11555 PF00378 Enoyl-CoA hydratase/isomerase M1S52_11560 PF18140 Propionyl-coenzyme A carboxylase BT domain M1S52_11560 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain M1S52_11560 PF00364 Biotin-requiring enzyme M1S52_11560 PF02785 Biotin carboxylase C-terminal domain M1S52_11560 PF00289 Biotin carboxylase, N-terminal domain M1S52_11565 PF00682 HMGL-like M1S52_11570 PF03466 LysR substrate binding domain M1S52_11570 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M1S52_11585 PF12806 Acetyl-CoA dehydrogenase C-terminal like M1S52_11585 PF02770 Acyl-CoA dehydrogenase, middle domain M1S52_11585 PF02771 Acyl-CoA dehydrogenase, N-terminal domain M1S52_11585 PF00441 Acyl-CoA dehydrogenase, C-terminal domain M1S52_11595 PF07690 Major Facilitator Superfamily M1S52_11605 PF01144 Coenzyme A transferase M1S52_11610 PF01144 Coenzyme A transferase M1S52_11615 PF07690 Major Facilitator Superfamily M1S52_11620 PF00441 Acyl-CoA dehydrogenase, C-terminal domain M1S52_11620 PF02770 Acyl-CoA dehydrogenase, middle domain M1S52_11620 PF02771 Acyl-CoA dehydrogenase, N-terminal domain M1S52_11625 PF00378 Enoyl-CoA hydratase/isomerase M1S52_11635 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain M1S52_11635 PF18321 3-hydroxybutyryl-CoA dehydrogenase reduced Rossmann-fold domain M1S52_11635 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain M1S52_11640 PF02803 Thiolase, C-terminal domain M1S52_11640 PF00108 Thiolase, N-terminal domain M1S52_11645 PF09339 IclR helix-turn-helix domain M1S52_11650 PF07690 Major Facilitator Superfamily M1S52_11655 PF03060 Nitronate monooxygenase M1S52_11660 PF00378 Enoyl-CoA hydratase/isomerase M1S52_11665 PF09339 IclR helix-turn-helix domain M1S52_11670 PF02515 CoA-transferase family III M1S52_11675 PF02771 Acyl-CoA dehydrogenase, N-terminal domain M1S52_11675 PF02770 Acyl-CoA dehydrogenase, middle domain M1S52_11675 PF00441 Acyl-CoA dehydrogenase, C-terminal domain M1S52_11680 PF07690 Major Facilitator Superfamily M1S52_11685 PF13419 Haloacid dehalogenase-like hydrolase M1S52_11690 PF00266 Aminotransferase class-V M1S52_11695 PF01266 FAD dependent oxidoreductase M1S52_11700 PF00528 Binding-protein-dependent transport system inner membrane component M1S52_11705 PF08402 TOBE domain M1S52_11705 PF00005 ABC transporter M1S52_11715 PF07702 UTRA domain M1S52_11715 PF00392 Bacterial regulatory proteins, gntR family M1S52_11720 PF01494 FAD binding domain M1S52_11725 PF01614 Bacterial transcriptional regulator M1S52_11725 PF09339 IclR helix-turn-helix domain M1S52_11730 PF02525 Flavodoxin-like fold M1S52_11735 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M1S52_11735 PF03466 LysR substrate binding domain M1S52_11740 PF02627 Carboxymuconolactone decarboxylase family M1S52_11745 PF00171 Aldehyde dehydrogenase family M1S52_11755 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin M1S52_11765 PF00171 Aldehyde dehydrogenase family M1S52_11770 PF00296 Luciferase-like monooxygenase M1S52_11775 PF01613 Flavin reductase like domain M1S52_11780 PF12697 Alpha/beta hydrolase family M1S52_11800 PF01292 Prokaryotic cytochrome b561 M1S52_11805 PF00199 Catalase M1S52_11840 PF03061 Thioesterase superfamily M1S52_11845 PF00132 Bacterial transferase hexapeptide (six repeats) M1S52_11850 PF07848 PaaX-like protein M1S52_11850 PF08223 PaaX-like protein C-terminal domain M1S52_11855 PF00501 AMP-binding enzyme M1S52_11855 PF14535 AMP-binding enzyme C-terminal domain M1S52_11860 PF00108 Thiolase, N-terminal domain M1S52_11860 PF02803 Thiolase, C-terminal domain M1S52_11865 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain M1S52_11865 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain M1S52_11865 PF18321 3-hydroxybutyryl-CoA dehydrogenase reduced Rossmann-fold domain M1S52_11870 PF00378 Enoyl-CoA hydratase/isomerase M1S52_11875 PF00378 Enoyl-CoA hydratase/isomerase M1S52_11880 PF00970 Oxidoreductase FAD-binding domain M1S52_11880 PF00175 Oxidoreductase NAD-binding domain M1S52_11880 PF00111 2Fe-2S iron-sulfur cluster binding domain M1S52_11885 PF01883 Iron-sulfur cluster assembly protein M1S52_11890 PF05138 Phenylacetic acid catabolic protein M1S52_11895 PF06243 Phenylacetic acid degradation B M1S52_11900 PF05138 Phenylacetic acid catabolic protein M1S52_11905 PF00171 Aldehyde dehydrogenase family M1S52_11905 PF01575 MaoC like domain M1S52_11910 PF03315 Serine dehydratase beta chain M1S52_11910 PF03313 Serine dehydratase alpha chain M1S52_11915 PF13520 Amino acid permease M1S52_11920 PF00171 Aldehyde dehydrogenase family M1S52_11925 PF00083 Sugar (and other) transporter M1S52_11935 PF04324 BFD-like [2Fe-2S] binding domain M1S52_11935 PF07992 Pyridine nucleotide-disulphide oxidoreductase M1S52_11945 PF01266 FAD dependent oxidoreductase M1S52_11950 PF05544 Proline racemase M1S52_11955 PF00392 Bacterial regulatory proteins, gntR family M1S52_11965 PF00701 Dihydrodipicolinate synthetase family M1S52_11975 PF00376 MerR family regulatory protein M1S52_11975 PF09278 MerR, DNA binding M1S52_11990 PF02677 Epoxyqueuosine reductase QueH M1S52_12005 PF07690 Major Facilitator Superfamily M1S52_12010 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region M1S52_12020 PF03466 LysR substrate binding domain M1S52_12020 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M1S52_12040 PF05936 Bacterial Type VI secretion, VC_A0110, EvfL, ImpJ, VasE M1S52_12045 PF06812 ImpA, N-terminal, type VI secretion system M1S52_12050 PF00004 ATPase family associated with various cellular activities (AAA) M1S52_12050 PF07724 AAA domain (Cdc48 subfamily) M1S52_12050 PF17871 AAA lid domain M1S52_12050 PF10431 C-terminal, D2-small domain, of ClpB protein M1S52_12065 PF00691 OmpA family M1S52_12065 PF01389 OmpA-like transmembrane domain M1S52_12075 PF14331 ImcF-related N-terminal domain M1S52_12075 PF06761 Intracellular multiplication and human macrophage-killing M1S52_12075 PF06744 Type VI secretion protein IcmF C-terminal M1S52_12090 PF05947 Type VI secretion system, TssF M1S52_12100 PF00872 Transposase, Mutator family M1S52_12110 PF05943 Type VI secretion protein, EvpB/VC_A0108, tail sheath M1S52_12135 PF00005 ABC transporter M1S52_12140 PF00497 Bacterial extracellular solute-binding proteins, family 3 M1S52_12145 PF01425 Amidase M1S52_12150 PF01402 Ribbon-helix-helix protein, copG family M1S52_12150 PF08753 NikR C terminal nickel binding domain M1S52_12170 PF02525 Flavodoxin-like fold M1S52_12175 PF02785 Biotin carboxylase C-terminal domain M1S52_12175 PF00289 Biotin carboxylase, N-terminal domain M1S52_12175 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain M1S52_12190 PF08240 Alcohol dehydrogenase GroES-like domain M1S52_12190 PF13823 Alcohol dehydrogenase GroES-associated M1S52_12190 PF00107 Zinc-binding dehydrogenase M1S52_12200 PF00440 Bacterial regulatory proteins, tetR family M1S52_12220 PF00654 Voltage gated chloride channel M1S52_12225 PF00364 Biotin-requiring enzyme M1S52_12225 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain M1S52_12225 PF00289 Biotin carboxylase, N-terminal domain M1S52_12225 PF02785 Biotin carboxylase C-terminal domain M1S52_12235 PF07286 Protein of unknown function (DUF1445) M1S52_12240 PF03746 LamB/YcsF family M1S52_12245 PF01566 Natural resistance-associated macrophage protein M1S52_12250 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M1S52_12250 PF03466 LysR substrate binding domain M1S52_12265 PF03527 RHS protein M1S52_12265 PF05593 RHS Repeat M1S52_12270 PF10106 Uncharacterized protein conserved in bacteria (DUF2345) M1S52_12270 PF04717 Type VI secretion system, phage-baseplate injector M1S52_12270 PF13296 Putative type VI secretion system Rhs element Vgr M1S52_12280 PF13419 Haloacid dehalogenase-like hydrolase M1S52_12300 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain M1S52_12300 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain M1S52_12320 PF07690 Major Facilitator Superfamily M1S52_12335 PF03279 Bacterial lipid A biosynthesis acyltransferase M1S52_12340 PF00563 EAL domain M1S52_12340 PF00990 Diguanylate cyclase, GGDEF domain M1S52_12340 PF03707 Bacterial signalling protein N terminal repeat M1S52_12345 PF00892 EamA-like transporter family M1S52_12350 PF01037 Lrp/AsnC ligand binding domain M1S52_12355 PF05192 MutS domain III M1S52_12355 PF05188 MutS domain II M1S52_12355 PF05190 MutS family domain IV M1S52_12355 PF00488 MutS domain V M1S52_12355 PF01624 MutS domain I M1S52_12365 PF00037 4Fe-4S binding domain M1S52_12365 PF11953 Domain of unknown function (DUF3470) M1S52_12375 PF01596 O-methyltransferase M1S52_12385 PF00132 Bacterial transferase hexapeptide (six repeats) M1S52_12390 PF01205 Uncharacterized protein family UPF0029 M1S52_12400 PF00664 ABC transporter transmembrane region M1S52_12400 PF00005 ABC transporter M1S52_12400 PF03412 Peptidase C39 family M1S52_12405 PF02321 Outer membrane efflux protein M1S52_12410 PF12399 Branched-chain amino acid ATP-binding cassette transporter M1S52_12410 PF00005 ABC transporter M1S52_12415 PF03968 OstA-like protein M1S52_12430 PF00571 CBS domain M1S52_12430 PF01380 SIS domain M1S52_12435 PF09190 DALR domain M1S52_12435 PF01406 tRNA synthetases class I (C) catalytic domain M1S52_12460 PF01638 HxlR-like helix-turn-helix M1S52_12465 PF07690 Major Facilitator Superfamily M1S52_12490 PF03807 NADP oxidoreductase coenzyme F420-dependent M1S52_12490 PF14748 Pyrroline-5-carboxylate reductase dimerisation M1S52_12500 PF00313 'Cold-shock' DNA-binding domain M1S52_12505 PF01810 LysE type translocator M1S52_12535 PF02601 Exonuclease VII, large subunit M1S52_12535 PF13742 OB-fold nucleic acid binding domain M1S52_12570 PF09278 MerR, DNA binding M1S52_12570 PF00376 MerR family regulatory protein M1S52_12575 PF00403 Heavy-metal-associated domain M1S52_12580 PF00403 Heavy-metal-associated domain M1S52_12585 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M1S52_12585 PF03466 LysR substrate binding domain M1S52_12595 PF00355 Rieske [2Fe-2S] domain M1S52_12595 PF00848 Ring hydroxylating alpha subunit (catalytic domain) M1S52_12600 PF00866 Ring hydroxylating beta subunit M1S52_12605 PF00970 Oxidoreductase FAD-binding domain M1S52_12605 PF00111 2Fe-2S iron-sulfur cluster binding domain M1S52_12605 PF00175 Oxidoreductase NAD-binding domain M1S52_12610 PF00106 short chain dehydrogenase M1S52_12615 PF03594 Benzoate membrane transport protein M1S52_12620 PF07690 Major Facilitator Superfamily M1S52_12630 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III M1S52_12630 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal M1S52_12635 PF04408 Helicase associated domain (HA2) M1S52_12635 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold M1S52_12635 PF00271 Helicase conserved C-terminal domain M1S52_12635 PF11898 Domain of unknown function (DUF3418) M1S52_12635 PF00270 DEAD/DEAH box helicase M1S52_12640 PF00578 AhpC/TSA family M1S52_12640 PF10417 C-terminal domain of 1-Cys peroxiredoxin M1S52_12670 PF02798 Glutathione S-transferase, N-terminal domain M1S52_12670 PF00043 Glutathione S-transferase, C-terminal domain M1S52_12680 PF02390 Putative methyltransferase M1S52_12685 PF13417 Glutathione S-transferase, N-terminal domain M1S52_12685 PF00043 Glutathione S-transferase, C-terminal domain M1S52_12695 PF13488 Glycine zipper M1S52_12695 PF00691 OmpA family M1S52_12700 PF01979 Amidohydrolase family M1S52_12705 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain M1S52_12705 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain M1S52_12715 PF02926 THUMP domain M1S52_12715 PF01170 Putative RNA methylase family UPF0020 M1S52_12715 PF10672 S-adenosylmethionine-dependent methyltransferase M1S52_12730 PF07724 AAA domain (Cdc48 subfamily) M1S52_12730 PF02861 Clp amino terminal domain, pathogenicity island component M1S52_12730 PF10431 C-terminal, D2-small domain, of ClpB protein M1S52_12730 PF17871 AAA lid domain M1S52_12730 PF00004 ATPase family associated with various cellular activities (AAA) M1S52_12745 PF02566 OsmC-like protein M1S52_12755 PF00027 Cyclic nucleotide-binding domain M1S52_12755 PF13545 Crp-like helix-turn-helix domain M1S52_12765 PF00248 Aldo/keto reductase family M1S52_12780 PF00709 Adenylosuccinate synthetase M1S52_12785 PF13393 Histidyl-tRNA synthetase M1S52_12790 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain M1S52_12790 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain M1S52_12795 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain M1S52_12795 PF01411 tRNA synthetases class II (A) M1S52_12795 PF02272 DHHA1 domain M1S52_12800 PF13840 ACT domain M1S52_12800 PF00696 Amino acid kinase family M1S52_12800 PF01842 ACT domain M1S52_12805 PF02599 Global regulator protein family M1S52_12810 PF01351 Ribonuclease HII M1S52_12820 PF01292 Prokaryotic cytochrome b561 M1S52_12825 PF00962 Adenosine/AMP deaminase M1S52_12830 PF00860 Permease family M1S52_12840 PF00743 Flavin-binding monooxygenase-like M1S52_12845 PF00106 short chain dehydrogenase M1S52_12855 PF17954 Quercetinase C-terminal cupin domain M1S52_12855 PF02678 Pirin M1S52_12860 PF17932 Tetracyclin repressor-like, C-terminal domain M1S52_12860 PF00440 Bacterial regulatory proteins, tetR family M1S52_12870 PF00106 short chain dehydrogenase M1S52_12880 PF13610 DDE domain M1S52_12890 PF02796 Helix-turn-helix domain of resolvase M1S52_12890 PF00239 Resolvase, N terminal domain M1S52_12895 PF11809 Domain of unknown function (DUF3330) M1S52_12895 PF00563 EAL domain M1S52_12905 PF00589 Phage integrase family M1S52_12905 PF13495 Phage integrase, N-terminal SAM-like domain M1S52_12910 PF00583 Acetyltransferase (GNAT) family M1S52_12930 PF00893 Small Multidrug Resistance protein M1S52_12935 PF00809 Pterin binding enzyme M1S52_12955 PF13610 DDE domain M1S52_12960 PF01636 Phosphotransferase enzyme family M1S52_12970 PF13610 DDE domain M1S52_12975 PF00239 Resolvase, N terminal domain M1S52_12975 PF02796 Helix-turn-helix domain of resolvase M1S52_12995 PF00239 Resolvase, N terminal domain M1S52_12995 PF02796 Helix-turn-helix domain of resolvase M1S52_13000 PF13610 DDE domain M1S52_13010 PF04958 Arginine N-succinyltransferase beta subunit M1S52_13015 PF00202 Aminotransferase class-III M1S52_13025 PF00171 Aldehyde dehydrogenase family M1S52_13035 PF00392 Bacterial regulatory proteins, gntR family M1S52_13035 PF07729 FCD domain M1S52_13045 PF00324 Amino acid permease M1S52_13050 PF01266 FAD dependent oxidoreductase M1S52_13055 PF00324 Amino acid permease M1S52_13095 PF05593 RHS Repeat M1S52_13095 PF03527 RHS protein M1S52_13100 PF04717 Type VI secretion system, phage-baseplate injector M1S52_13100 PF10106 Uncharacterized protein conserved in bacteria (DUF2345) M1S52_13100 PF13296 Putative type VI secretion system Rhs element Vgr M1S52_13120 PF03180 NLPA lipoprotein M1S52_13125 PF05987 Bacterial protein of unknown function (DUF898) M1S52_13140 PF07992 Pyridine nucleotide-disulphide oxidoreductase M1S52_13140 PF00724 NADH:flavin oxidoreductase / NADH oxidase family M1S52_13145 PF00764 Arginosuccinate synthase M1S52_13150 PF01590 GAF domain M1S52_13150 PF00563 EAL domain M1S52_13150 PF00360 Phytochrome region M1S52_13150 PF00990 Diguanylate cyclase, GGDEF domain M1S52_13155 PF01979 Amidohydrolase family M1S52_13160 PF00929 Exonuclease M1S52_13170 PF07715 TonB-dependent Receptor Plug Domain M1S52_13170 PF00593 TonB dependent receptor M1S52_13175 PF00724 NADH:flavin oxidoreductase / NADH oxidase family M1S52_13175 PF07992 Pyridine nucleotide-disulphide oxidoreductase M1S52_13180 PF00005 ABC transporter M1S52_13180 PF08352 Oligopeptide/dipeptide transporter, C-terminal region M1S52_13185 PF12911 N-terminal TM domain of oligopeptide transport permease C M1S52_13185 PF00528 Binding-protein-dependent transport system inner membrane component M1S52_13190 PF00528 Binding-protein-dependent transport system inner membrane component M1S52_13195 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle M1S52_13200 PF01464 Transglycosylase SLT domain M1S52_13200 PF01476 LysM domain M1S52_13200 PF01476 LysM domain M1S52_13200 PF01464 Transglycosylase SLT domain M1S52_13205 PF00929 Exonuclease M1S52_13215 PF00293 NUDIX domain M1S52_13215 PF09297 NADH pyrophosphatase zinc ribbon domain M1S52_13225 PF04972 BON domain M1S52_13230 PF02021 Uncharacterised protein family UPF0102 M1S52_13235 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases M1S52_13245 PF03466 LysR substrate binding domain M1S52_13245 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M1S52_13250 PF01810 LysE type translocator M1S52_13260 PF13411 MerR HTH family regulatory protein M1S52_13270 PF01494 FAD binding domain M1S52_13275 PF01494 FAD binding domain M1S52_13280 PF00557 Metallopeptidase family M24 M1S52_13280 PF05195 Aminopeptidase P, N-terminal domain M1S52_13320 PF00884 Sulfatase M1S52_13320 PF08019 Phosphoethanolamine transferase EptA/EptB M1S52_13370 PF01551 Peptidase family M23 M1S52_13370 PF08525 Opacity-associated protein A N-terminal motif M1S52_13370 PF01476 LysM domain M1S52_13695 PF01812 5-formyltetrahydrofolate cyclo-ligase family M1S52_13700 PF04355 SmpA / OmlA family M1S52_13700 PF00691 OmpA family M1S52_13705 PF03895 YadA-like membrane anchor domain M1S52_13705 PF05658 Head domain of trimeric autotransporter adhesin M1S52_13705 PF05662 Coiled stalk of trimeric autotransporter adhesin M1S52_13705 PF13018 Extended Signal Peptide of Type V secretion system M1S52_13710 PF02190 ATP-dependent protease La (LON) substrate-binding domain M1S52_13710 PF00004 ATPase family associated with various cellular activities (AAA) M1S52_13710 PF05362 Lon protease (S16) C-terminal proteolytic domain M1S52_13715 PF02590 Predicted SPOUT methyltransferase M1S52_13720 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase M1S52_13730 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase M1S52_13730 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain M1S52_13735 PF04060 Putative Fe-S cluster M1S52_13740 PF00730 HhH-GPD superfamily base excision DNA repair protein M1S52_13740 PF00633 Helix-hairpin-helix motif M1S52_13740 PF10576 Iron-sulfur binding domain of endonuclease III M1S52_13765 PF00905 Penicillin binding protein transpeptidase domain M1S52_13765 PF03717 Penicillin-binding Protein dimerisation domain M1S52_13780 PF02492 CobW/HypB/UreG, nucleotide-binding domain M1S52_13785 PF01730 UreF M1S52_13790 PF02814 UreE urease accessory protein, N-terminal domain M1S52_13790 PF05194 UreE urease accessory protein, C-terminal domain M1S52_13795 PF01979 Amidohydrolase family M1S52_13795 PF00449 Urease alpha-subunit, N-terminal domain M1S52_13800 PF00699 Urease beta subunit M1S52_13805 PF00547 Urease, gamma subunit M1S52_13810 PF01774 UreD urease accessory protein M1S52_13825 PF00463 Isocitrate lyase family M1S52_13830 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M1S52_13830 PF03466 LysR substrate binding domain M1S52_13835 PF00571 CBS domain M1S52_13835 PF01595 Cyclin M transmembrane N-terminal domain M1S52_13835 PF03471 Transporter associated domain M1S52_13840 PF03600 Citrate transporter M1S52_13855 PF00009 Elongation factor Tu GTP binding domain M1S52_13860 PF01507 Phosphoadenosine phosphosulfate reductase family M1S52_13870 PF14052 Capsule assembly protein Wzi M1S52_13875 PF00152 tRNA synthetases class II (D, K and N) M1S52_13875 PF01336 OB-fold nucleic acid binding domain M1S52_13890 PF00301 Rubredoxin M1S52_13895 PF07992 Pyridine nucleotide-disulphide oxidoreductase M1S52_13895 PF18113 Rubredoxin binding C-terminal domain M1S52_13900 PF00561 alpha/beta hydrolase fold M1S52_13905 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M1S52_13905 PF03466 LysR substrate binding domain M1S52_13915 PF02503 Polyphosphate kinase middle domain M1S52_13915 PF13090 Polyphosphate kinase C-terminal domain 2 M1S52_13915 PF17941 Polyphosphate kinase C-terminal domain 1 M1S52_13915 PF13089 Polyphosphate kinase N-terminal domain M1S52_13920 PF00912 Transglycosylase M1S52_13925 PF01694 Rhomboid family M1S52_13935 PF00005 ABC transporter M1S52_13940 PF13472 GDSL-like Lipase/Acylhydrolase family M1S52_13945 PF00484 Carbonic anhydrase M1S52_13950 PF00561 alpha/beta hydrolase fold M1S52_13960 PF07715 TonB-dependent Receptor Plug Domain M1S52_13960 PF00593 TonB dependent receptor M1S52_13965 PF01521 Iron-sulphur cluster biosynthesis M1S52_13965 PF01106 NifU-like domain M1S52_13975 PF00884 Sulfatase M1S52_13980 PF03781 Sulfatase-modifying factor enzyme 1 M1S52_13995 PF00291 Pyridoxal-phosphate dependent enzyme M1S52_14000 PF01384 Phosphate transporter family M1S52_14005 PF02310 B12 binding domain M1S52_14005 PF02607 B12 binding domain M1S52_14005 PF02965 Vitamin B12 dependent methionine synthase, activation domain M1S52_14005 PF00809 Pterin binding enzyme M1S52_14005 PF02574 Homocysteine S-methyltransferase M1S52_14010 PF02779 Transketolase, pyrimidine binding domain M1S52_14010 PF02780 Transketolase, C-terminal domain M1S52_14015 PF00456 Transketolase, thiamine diphosphate binding domain M1S52_14020 PF07690 Major Facilitator Superfamily M1S52_14030 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M1S52_14030 PF03466 LysR substrate binding domain M1S52_14040 PF01263 Aldose 1-epimerase M1S52_14045 PF07690 Major Facilitator Superfamily M1S52_14050 PF02311 AraC-like ligand binding domain M1S52_14050 PF12833 Helix-turn-helix domain M1S52_14055 PF04960 Glutaminase M1S52_14060 PF01327 Polypeptide deformylase M1S52_14065 PF07690 Major Facilitator Superfamily M1S52_14075 PF00205 Thiamine pyrophosphate enzyme, central domain M1S52_14075 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain M1S52_14075 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain M1S52_14080 PF00171 Aldehyde dehydrogenase family M1S52_14085 PF01958 Domain of unknown function DUF108 M1S52_14085 PF03447 Homoserine dehydrogenase, NAD binding domain M1S52_14095 PF12697 Alpha/beta hydrolase family M1S52_14105 PF07690 Major Facilitator Superfamily M1S52_14110 PF07992 Pyridine nucleotide-disulphide oxidoreductase M1S52_14110 PF14759 Reductase C-terminal M1S52_14115 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily M1S52_14125 PF00355 Rieske [2Fe-2S] domain M1S52_14135 PF00355 Rieske [2Fe-2S] domain M1S52_14140 PF09339 IclR helix-turn-helix domain M1S52_14140 PF01614 Bacterial transcriptional regulator M1S52_14155 PF00378 Enoyl-CoA hydratase/isomerase M1S52_14165 PF00535 Glycosyl transferase family 2 M1S52_14170 PF14883 Hypothetical glycosyl hydrolase family 13 M1S52_14170 PF01522 Polysaccharide deacetylase M1S52_14175 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase M1S52_14180 PF07152 YaeQ protein M1S52_14185 PF00375 Sodium:dicarboxylate symporter family M1S52_14190 PF02492 CobW/HypB/UreG, nucleotide-binding domain M1S52_14190 PF07683 Cobalamin synthesis protein cobW C-terminal domain M1S52_14200 PF03061 Thioesterase superfamily M1S52_14210 PF02028 BCCT, betaine/carnitine/choline family transporter M1S52_14215 PF02028 BCCT, betaine/carnitine/choline family transporter M1S52_14220 PF00440 Bacterial regulatory proteins, tetR family M1S52_14220 PF13977 BetI-type transcriptional repressor, C-terminal M1S52_14225 PF00171 Aldehyde dehydrogenase family M1S52_14230 PF05199 GMC oxidoreductase M1S52_14230 PF00732 GMC oxidoreductase M1S52_14235 PF06039 Malate:quinone oxidoreductase (Mqo) M1S52_14245 PF02574 Homocysteine S-methyltransferase M1S52_14250 PF13520 Amino acid permease M1S52_14275 PF00701 Dihydrodipicolinate synthetase family M1S52_14280 PF00083 Sugar (and other) transporter M1S52_14400 PF02768 DNA polymerase III beta subunit, C-terminal domain M1S52_14400 PF00712 DNA polymerase III beta subunit, N-terminal domain M1S52_14400 PF02767 DNA polymerase III beta subunit, central domain M1S52_14440 PF05016 ParE toxin of type II toxin-antitoxin system, parDE M1S52_14590 PF07007 Lysozyme inhibitor LprI M1S52_14635 PF01695 IstB-like ATP binding protein M1S52_14645 PF00145 C-5 cytosine-specific DNA methylase M1S52_14690 PF01381 Helix-turn-helix M1S52_14690 PF00717 Peptidase S24-like M1S52_14725 PF00929 Exonuclease M1S52_14800 PF07690 Major Facilitator Superfamily M1S52_14805 PF13533 Biotin-lipoyl like M1S52_14810 PF03061 Thioesterase superfamily M1S52_14815 PF00490 Delta-aminolevulinic acid dehydratase M1S52_14820 PF01266 FAD dependent oxidoreductase M1S52_14825 PF08338 Domain of unknown function (DUF1731) M1S52_14825 PF01370 NAD dependent epimerase/dehydratase family M1S52_14845 PF00149 Calcineurin-like phosphoesterase M1S52_14845 PF12320 Type 5 capsule protein repressor C-terminal domain M1S52_14855 PF01168 Alanine racemase, N-terminal domain M1S52_14860 PF00437 Type II/IV secretion system protein M1S52_14865 PF00437 Type II/IV secretion system protein M1S52_14870 PF01475 Ferric uptake regulator family M1S52_14875 PF04355 SmpA / OmlA family M1S52_14880 PF03658 RnfH family Ubiquitin M1S52_14890 PF01814 Hemerythrin HHE cation binding domain M1S52_14895 PF13230 Glutamine amidotransferases class-II M1S52_14905 PF00696 Amino acid kinase family M1S52_14910 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II M1S52_14910 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III M1S52_14910 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain M1S52_14910 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I M1S52_14915 PF00692 dUTPase M1S52_14920 PF00580 UvrD/REP helicase N-terminal domain M1S52_14920 PF13361 UvrD-like helicase C-terminal domain M1S52_14925 PF00691 OmpA family M1S52_14925 PF13488 Glycine zipper M1S52_14930 PF01553 Acyltransferase M1S52_14940 PF03775 Septum formation inhibitor MinC, C-terminal domain M1S52_14945 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain M1S52_14950 PF03776 Septum formation topological specificity factor MinE M1S52_14970 PF01810 LysE type translocator M1S52_14975 PF13491 4TM region of DNA translocase FtsK/SpoIIIE M1S52_14975 PF01580 FtsK/SpoIIIE family M1S52_14975 PF09397 Ftsk gamma domain M1S52_14975 PF17854 FtsK alpha domain M1S52_14980 PF07992 Pyridine nucleotide-disulphide oxidoreductase M1S52_14985 PF03588 Leucyl/phenylalanyl-tRNA protein transferase M1S52_14990 PF04377 Arginine-tRNA-protein transferase, C terminus M1S52_14990 PF04376 Arginine-tRNA-protein transferase, N terminus M1S52_14995 PF00583 Acetyltransferase (GNAT) family M1S52_15015 PF00679 Elongation factor G C-terminus M1S52_15015 PF14492 Elongation Factor G, domain II M1S52_15015 PF03764 Elongation factor G, domain IV M1S52_15015 PF00009 Elongation factor Tu GTP binding domain M1S52_15015 PF03144 Elongation factor Tu domain 2 M1S52_15020 PF00177 Ribosomal protein S7p/S5e M1S52_15025 PF00164 Ribosomal protein S12/S23 M1S52_15035 PF02801 Beta-ketoacyl synthase, C-terminal domain M1S52_15035 PF00109 Beta-ketoacyl synthase, N-terminal domain M1S52_15040 PF03653 Uncharacterised protein family (UPF0093) M1S52_15045 PF02678 Pirin M1S52_15045 PF05726 Pirin C-terminal cupin domain M1S52_15055 PF00795 Carbon-nitrogen hydrolase M1S52_15055 PF02540 NAD synthase M1S52_15070 PF00111 2Fe-2S iron-sulfur cluster binding domain M1S52_15070 PF00175 Oxidoreductase NAD-binding domain M1S52_15070 PF00970 Oxidoreductase FAD-binding domain M1S52_15075 PF00171 Aldehyde dehydrogenase family M1S52_15080 PF00355 Rieske [2Fe-2S] domain M1S52_15080 PF00848 Ring hydroxylating alpha subunit (catalytic domain) M1S52_15085 PF07859 alpha/beta hydrolase fold M1S52_15090 PF02028 BCCT, betaine/carnitine/choline family transporter M1S52_15095 PF00180 Isocitrate/isopropylmalate dehydrogenase M1S52_15100 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M1S52_15100 PF03466 LysR substrate binding domain M1S52_15120 PF00037 4Fe-4S binding domain M1S52_15125 PF01467 Cytidylyltransferase-like M1S52_15130 PF01668 SmpB protein M1S52_15135 PF03358 NADPH-dependent FMN reductase M1S52_15140 PF02578 Multi-copper polyphenol oxidoreductase laccase M1S52_15145 PF00849 RNA pseudouridylate synthase M1S52_15145 PF01479 S4 domain M1S52_15150 PF13525 Outer membrane lipoprotein M1S52_15155 PF10410 DnaB-helicase binding domain of primase M1S52_15155 PF01807 CHC2 zinc finger M1S52_15155 PF08275 DNA primase catalytic core, N-terminal domain M1S52_15155 PF08278 DNA primase DnaG DnaB-binding M1S52_15160 PF01488 Shikimate / quinate 5-dehydrogenase M1S52_15160 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain M1S52_15160 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain M1S52_15170 PF03550 Outer membrane lipoprotein LolB M1S52_15175 PF08544 GHMP kinases C terminal M1S52_15175 PF00288 GHMP kinases N terminal domain M1S52_15200 PF14572 Phosphoribosyl synthetase-associated domain M1S52_15200 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase M1S52_15205 PF01386 Ribosomal L25p family M1S52_15210 PF01195 Peptidyl-tRNA hydrolase M1S52_15215 PF02261 Aspartate decarboxylase M1S52_15250 PF00550 Phosphopantetheine attachment site M1S52_15260 PF00698 Acyl transferase domain M1S52_15265 PF01783 Ribosomal L32p protein family M1S52_15270 PF02620 Large ribosomal RNA subunit accumulation protein YceD M1S52_15275 PF04315 Elongation factor P hydroxylase M1S52_15280 PF01300 Telomere recombination M1S52_15285 PF02616 Segregation and condensation protein ScpA M1S52_15290 PF04079 Segregation and condensation complex subunit ScpB M1S52_15295 PF00849 RNA pseudouridylate synthase M1S52_15295 PF01479 S4 domain M1S52_15310 PF00155 Aminotransferase class I and II M1S52_15315 PF00202 Aminotransferase class-III M1S52_15315 PF06968 Biotin and Thiamin Synthesis associated domain M1S52_15315 PF04055 Radical SAM superfamily M1S52_15320 PF12697 Alpha/beta hydrolase family M1S52_15320 PF08241 Methyltransferase domain M1S52_15325 PF02358 Trehalose-phosphatase M1S52_15330 PF00982 Glycosyltransferase family 20 M1S52_15335 PF07690 Major Facilitator Superfamily M1S52_15340 PF00210 Ferritin-like domain M1S52_15345 PF00533 BRCA1 C Terminus (BRCT) domain M1S52_15345 PF01653 NAD-dependent DNA ligase adenylation domain M1S52_15345 PF03120 NAD-dependent DNA ligase OB-fold domain M1S52_15345 PF03119 NAD-dependent DNA ligase C4 zinc finger domain M1S52_15345 PF12826 Helix-hairpin-helix motif M1S52_15355 PF06470 SMC proteins Flexible Hinge Domain M1S52_15355 PF02463 RecF/RecN/SMC N terminal domain M1S52_15365 PF01925 Sulfite exporter TauE/SafE M1S52_15375 PF03309 Type III pantothenate kinase M1S52_15380 PF00448 SRP54-type protein, GTPase domain M1S52_15380 PF02881 SRP54-type protein, helical bundle domain M1S52_15380 PF02978 Signal peptide binding domain M1S52_15390 PF01207 Dihydrouridine synthase (Dus) M1S52_15420 PF00692 dUTPase M1S52_15435 PF01048 Phosphorylase superfamily M1S52_15440 PF10609 NUBPL iron-transfer P-loop NTPase M1S52_15450 PF09334 tRNA synthetases class I (M) M1S52_15450 PF01588 Putative tRNA binding domain M1S52_15475 PF13533 Biotin-lipoyl like M1S52_15480 PF00291 Pyridoxal-phosphate dependent enzyme M1S52_15495 PF05552 Conserved TM helix M1S52_15510 PF00970 Oxidoreductase FAD-binding domain M1S52_15510 PF00175 Oxidoreductase NAD-binding domain M1S52_15515 PF03466 LysR substrate binding domain M1S52_15515 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M1S52_15520 PF00313 'Cold-shock' DNA-binding domain M1S52_15530 PF00361 Proton-conducting membrane transporter M1S52_15535 PF00361 Proton-conducting membrane transporter M1S52_15540 PF00361 Proton-conducting membrane transporter M1S52_15540 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus M1S52_15545 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L M1S52_15550 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 M1S52_15555 PF12838 4Fe-4S dicluster domain M1S52_15565 PF00384 Molybdopterin oxidoreductase M1S52_15565 PF04879 Molybdopterin oxidoreductase Fe4S4 domain M1S52_15565 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region M1S52_15570 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit M1S52_15570 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region M1S52_15570 PF10531 SLBB domain M1S52_15585 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit M1S52_15590 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 M1S52_15595 PF17151 Periplasmic sensor domain M1S52_15595 PF00990 Diguanylate cyclase, GGDEF domain M1S52_15605 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M1S52_15605 PF00672 HAMP domain M1S52_15605 PF00512 His Kinase A (phospho-acceptor) domain M1S52_15610 PF00072 Response regulator receiver domain M1S52_15610 PF00486 Transcriptional regulatory protein, C terminal M1S52_15620 PF03477 ATP cone domain M1S52_15620 PF02867 Ribonucleotide reductase, barrel domain M1S52_15620 PF00317 Ribonucleotide reductase, all-alpha domain M1S52_15630 PF00268 Ribonucleotide reductase, small chain M1S52_15640 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M1S52_15640 PF13756 Stimulus-sensing domain M1S52_15640 PF00672 HAMP domain M1S52_15640 PF00512 His Kinase A (phospho-acceptor) domain M1S52_15640 PF13755 Sensor N-terminal transmembrane domain M1S52_15710 PF01011 PQQ enzyme repeat M1S52_15710 PF13360 PQQ-like domain M1S52_15735 PF02567 Phenazine biosynthesis-like protein M1S52_15760 PF01613 Flavin reductase like domain M1S52_15765 PF08267 Cobalamin-independent synthase, N-terminal domain M1S52_15765 PF01717 Cobalamin-independent synthase, Catalytic domain M1S52_15775 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M1S52_15775 PF03466 LysR substrate binding domain M1S52_15780 PF01810 LysE type translocator M1S52_15790 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term M1S52_15790 PF12833 Helix-turn-helix domain M1S52_15795 PF07687 Peptidase dimerisation domain M1S52_15795 PF01546 Peptidase family M20/M25/M40 M1S52_15805 PF03466 LysR substrate binding domain M1S52_15805 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M1S52_15810 PF07690 Major Facilitator Superfamily M1S52_15820 PF03466 LysR substrate binding domain M1S52_15820 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M1S52_15825 PF14537 Cytochrome c3 M1S52_15825 PF00890 FAD binding domain M1S52_15835 PF02515 CoA-transferase family III M1S52_15840 PF07690 Major Facilitator Superfamily M1S52_15845 PF02771 Acyl-CoA dehydrogenase, N-terminal domain M1S52_15845 PF00441 Acyl-CoA dehydrogenase, C-terminal domain M1S52_15845 PF02770 Acyl-CoA dehydrogenase, middle domain M1S52_15850 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M1S52_15850 PF03466 LysR substrate binding domain M1S52_15855 PF00107 Zinc-binding dehydrogenase M1S52_15855 PF08240 Alcohol dehydrogenase GroES-like domain M1S52_15860 PF00962 Adenosine/AMP deaminase M1S52_15885 PF02445 Quinolinate synthetase A protein M1S52_15890 PF01960 ArgJ family M1S52_15895 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain M1S52_15895 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain M1S52_15900 PF00893 Small Multidrug Resistance protein M1S52_15910 PF05275 Copper resistance protein B precursor (CopB) M1S52_15915 PF00394 Multicopper oxidase M1S52_15915 PF07731 Multicopper oxidase M1S52_15915 PF07732 Multicopper oxidase M1S52_15930 PF00834 Ribulose-phosphate 3 epimerase family M1S52_15940 PF00756 Putative esterase M1S52_15950 PF04445 Putative SAM-dependent methyltransferase M1S52_15955 PF00814 Glycoprotease family M1S52_15960 PF00132 Bacterial transferase hexapeptide (six repeats) M1S52_15965 PF00293 NUDIX domain M1S52_16005 PF00425 chorismate binding enzyme M1S52_16005 PF04715 Anthranilate synthase component I, N terminal region M1S52_16010 PF00155 Aminotransferase class I and II M1S52_16015 PF00815 Histidinol dehydrogenase M1S52_16020 PF01634 ATP phosphoribosyltransferase M1S52_16025 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) M1S52_16030 PF01722 BolA-like protein M1S52_16035 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein M1S52_16040 PF00309 Sigma-54 factor, Activator interacting domain (AID) M1S52_16040 PF04963 Sigma-54 factor, core binding domain M1S52_16040 PF04552 Sigma-54, DNA binding domain M1S52_16085 PF00795 Carbon-nitrogen hydrolase M1S52_16095 PF01047 MarR family M1S52_16100 PF02566 OsmC-like protein M1S52_16105 PF00437 Type II/IV secretion system protein M1S52_16125 PF01367 5'-3' exonuclease, C-terminal SAM fold M1S52_16125 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain M1S52_16125 PF00476 DNA polymerase family A M1S52_16125 PF01612 3'-5' exonuclease M1S52_16130 PF02325 YGGT family M1S52_16135 PF14748 Pyrroline-5-carboxylate reductase dimerisation M1S52_16135 PF03807 NADP oxidoreductase coenzyme F420-dependent M1S52_16140 PF09179 TilS substrate binding domain M1S52_16140 PF01171 PP-loop family M1S52_16140 PF11734 TilS substrate C-terminal domain M1S52_16145 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit M1S52_16150 PF02541 Ppx/GppA phosphatase family M1S52_16155 PF00085 Thioredoxin M1S52_16160 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain M1S52_16160 PF07498 Rho termination factor, N-terminal domain M1S52_16160 PF07497 Rho termination factor, RNA-binding domain M1S52_16175 PF00216 Bacterial DNA-binding protein M1S52_16180 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain M1S52_16180 PF01588 Putative tRNA binding domain M1S52_16180 PF03147 Ferredoxin-fold anticodon binding domain M1S52_16180 PF03484 tRNA synthetase B5 domain M1S52_16180 PF03483 B3/4 domain M1S52_16185 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain M1S52_16185 PF01409 tRNA synthetases class II core domain (F) M1S52_16205 PF00453 Ribosomal protein L20 M1S52_16210 PF01632 Ribosomal protein L35 M1S52_16220 PF07690 Major Facilitator Superfamily M1S52_16225 PF09335 SNARE associated Golgi protein M1S52_16230 PF02798 Glutathione S-transferase, N-terminal domain M1S52_16230 PF00043 Glutathione S-transferase, C-terminal domain M1S52_16235 PF05198 Translation initiation factor IF-3, N-terminal domain M1S52_16235 PF00707 Translation initiation factor IF-3, C-terminal domain M1S52_16240 PF02824 TGS domain M1S52_16240 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) M1S52_16240 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain M1S52_16240 PF03129 Anticodon binding domain M1S52_16245 PF00501 AMP-binding enzyme M1S52_16245 PF13193 AMP-binding enzyme C-terminal domain M1S52_16250 PF04751 Protein of unknown function (DUF615) M1S52_16255 PF00381 PTS HPr component phosphorylation site M1S52_16260 PF03668 P-loop ATPase protein family M1S52_16265 PF02569 Pantoate-beta-alanine ligase M1S52_16270 PF02548 Ketopantoate hydroxymethyltransferase M1S52_16275 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) M1S52_16280 PF12626 Polymerase A arginine-rich C-terminus M1S52_16280 PF12627 Probable RNA and SrmB- binding site of polymerase A M1S52_16280 PF01743 Poly A polymerase head domain M1S52_16290 PF03819 MazG nucleotide pyrophosphohydrolase domain M1S52_16300 PF13291 ACT domain M1S52_16300 PF04607 Region found in RelA / SpoT proteins M1S52_16300 PF02824 TGS domain M1S52_16305 PF05958 tRNA (Uracil-5-)-methyltransferase M1S52_16315 PF00291 Pyridoxal-phosphate dependent enzyme M1S52_16320 PF00672 HAMP domain M1S52_16320 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M1S52_16320 PF00512 His Kinase A (phospho-acceptor) domain M1S52_16320 PF01627 Hpt domain M1S52_16320 PF00072 Response regulator receiver domain M1S52_16320 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) M1S52_16325 PF00378 Enoyl-CoA hydratase/isomerase M1S52_16330 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase M1S52_16330 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase M1S52_16335 PF01261 Xylose isomerase-like TIM barrel M1S52_16345 PF00106 short chain dehydrogenase M1S52_16350 PF02233 NAD(P) transhydrogenase beta subunit M1S52_16355 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch M1S52_16360 PF01262 Alanine dehydrogenase/PNT, C-terminal domain M1S52_16360 PF05222 Alanine dehydrogenase/PNT, N-terminal domain M1S52_16365 PF00892 EamA-like transporter family M1S52_16375 PF07690 Major Facilitator Superfamily M1S52_16380 PF01207 Dihydrouridine synthase (Dus) M1S52_16390 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M1S52_16390 PF03466 LysR substrate binding domain M1S52_16400 PF00899 ThiF family M1S52_16410 PF00694 Aconitase C-terminal domain M1S52_16410 PF00330 Aconitase family (aconitate hydratase) M1S52_16430 PF00009 Elongation factor Tu GTP binding domain M1S52_16430 PF03144 Elongation factor Tu domain 2 M1S52_16430 PF16658 Class II release factor RF3, C-terminal domain M1S52_16450 PF03707 Bacterial signalling protein N terminal repeat M1S52_16450 PF00563 EAL domain M1S52_16450 PF00990 Diguanylate cyclase, GGDEF domain M1S52_16455 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain M1S52_16455 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain M1S52_16460 PF10369 Small subunit of acetolactate synthase M1S52_16465 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain M1S52_16465 PF00205 Thiamine pyrophosphate enzyme, central domain M1S52_16465 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain M1S52_16475 PF09334 tRNA synthetases class I (M) M1S52_16475 PF00133 tRNA synthetases class I (I, L, M and V) M1S52_16475 PF08264 Anticodon-binding domain of tRNA M1S52_16475 PF13603 Leucyl-tRNA synthetase, Domain 2 M1S52_16490 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion M1S52_16495 PF00005 ABC transporter M1S52_16495 PF02687 FtsX-like permease family M1S52_16495 PF12704 MacB-like periplasmic core domain M1S52_16500 PF02321 Outer membrane efflux protein M1S52_16515 PF00929 Exonuclease M1S52_16520 PF03193 RsgA GTPase M1S52_16530 PF00462 Glutaredoxin M1S52_16535 PF02556 Preprotein translocase subunit SecB M1S52_16550 PF00109 Beta-ketoacyl synthase, N-terminal domain M1S52_16550 PF02801 Beta-ketoacyl synthase, C-terminal domain M1S52_16565 PF02801 Beta-ketoacyl synthase, C-terminal domain M1S52_16565 PF00109 Beta-ketoacyl synthase, N-terminal domain M1S52_16575 PF04820 Tryptophan halogenase M1S52_16595 PF00221 Aromatic amino acid lyase M1S52_16610 PF00501 AMP-binding enzyme M1S52_16610 PF13193 AMP-binding enzyme C-terminal domain M1S52_16620 PF00550 Phosphopantetheine attachment site M1S52_16625 PF00550 Phosphopantetheine attachment site M1S52_16640 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal M1S52_16640 PF01926 50S ribosome-binding GTPase M1S52_16645 PF13360 PQQ-like domain M1S52_16655 PF03129 Anticodon binding domain M1S52_16655 PF13393 Histidyl-tRNA synthetase M1S52_16660 PF04551 GcpE protein M1S52_16665 PF13464 Domain of unknown function (DUF4115) M1S52_16680 PF00334 Nucleoside diphosphate kinase M1S52_16685 PF04384 Iron-sulphur cluster assembly M1S52_16690 PF01569 PAP2 superfamily M1S52_16700 PF11818 C-terminal domain of tail specific protease (DUF3340) M1S52_16700 PF00595 PDZ domain M1S52_16700 PF03572 Peptidase family S41 M1S52_16700 PF17804 Tail specific protease N-terminal domain M1S52_16705 PF00933 Glycosyl hydrolase family 3 N terminal domain M1S52_16715 PF00561 alpha/beta hydrolase fold M1S52_16720 PF00171 Aldehyde dehydrogenase family M1S52_16725 PF00171 Aldehyde dehydrogenase family M1S52_16730 PF01202 Shikimate kinase M1S52_16735 PF02447 GntP family permease M1S52_16740 PF01081 KDPG and KHG aldolase M1S52_16745 PF00920 Dehydratase family M1S52_16750 PF00871 Acetokinase family M1S52_16755 PF07085 DRTGG domain M1S52_16755 PF01515 Phosphate acetyl/butaryl transferase M1S52_16760 PF05683 Fumarase C-terminus M1S52_16760 PF05681 Fumarate hydratase (Fumerase) M1S52_16775 PF06689 ClpX C4-type zinc finger M1S52_16775 PF10431 C-terminal, D2-small domain, of ClpB protein M1S52_16775 PF07724 AAA domain (Cdc48 subfamily) M1S52_16780 PF00574 Clp protease M1S52_16785 PF05697 Bacterial trigger factor protein (TF) M1S52_16785 PF05698 Bacterial trigger factor protein (TF) C-terminus M1S52_16785 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase M1S52_16790 PF00593 TonB dependent receptor M1S52_16790 PF07715 TonB-dependent Receptor Plug Domain M1S52_16795 PF13640 2OG-Fe(II) oxygenase superfamily M1S52_16795 PF18331 PKHD-type hydroxylase C-terminal domain M1S52_16800 PF00682 HMGL-like M1S52_16800 PF08502 LeuA allosteric (dimerisation) domain M1S52_16805 PF00561 alpha/beta hydrolase fold M1S52_16810 PF00561 alpha/beta hydrolase fold M1S52_16810 PF07021 Methionine biosynthesis protein MetW M1S52_16820 PF01725 Ham1 family M1S52_16830 PF02416 mttA/Hcf106 family M1S52_16835 PF02416 mttA/Hcf106 family M1S52_16840 PF00902 Sec-independent protein translocase protein (TatC) M1S52_16860 PF01790 Prolipoprotein diacylglyceryl transferase M1S52_16875 PF00303 Thymidylate synthase M1S52_16880 PF00186 Dihydrofolate reductase M1S52_16890 PF01625 Peptide methionine sulfoxide reductase M1S52_16900 PF01618 MotA/TolQ/ExbB proton channel family M1S52_16910 PF00551 Formyl transferase M1S52_16910 PF01842 ACT domain M1S52_16920 PF00171 Aldehyde dehydrogenase family M1S52_16925 PF00830 Ribosomal L28 family M1S52_16930 PF00471 Ribosomal protein L33 M1S52_16935 PF02254 TrkA-N domain M1S52_16935 PF00999 Sodium/hydrogen exchanger family M1S52_16955 PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) M1S52_16960 PF13361 UvrD-like helicase C-terminal domain M1S52_16960 PF00580 UvrD/REP helicase N-terminal domain M1S52_16975 PF01396 Topoisomerase DNA binding C4 zinc finger M1S52_16975 PF01751 Toprim domain M1S52_16975 PF08272 Topoisomerase I zinc-ribbon-like M1S52_16975 PF01131 DNA topoisomerase M1S52_16985 PF01638 HxlR-like helix-turn-helix M1S52_16990 PF08240 Alcohol dehydrogenase GroES-like domain M1S52_16990 PF00107 Zinc-binding dehydrogenase M1S52_16995 PF04102 SlyX M1S52_17000 PF00005 ABC transporter M1S52_17000 PF16326 ABC transporter C-terminal domain M1S52_17000 PF12848 ABC transporter M1S52_17005 PF01810 LysE type translocator M1S52_17010 PF03279 Bacterial lipid A biosynthesis acyltransferase M1S52_17020 PF00375 Sodium:dicarboxylate symporter family M1S52_17030 PF01118 Semialdehyde dehydrogenase, NAD binding domain M1S52_17030 PF02774 Semialdehyde dehydrogenase, dimerisation domain M1S52_17050 PF01416 tRNA pseudouridine synthase M1S52_17060 PF01176 Translation initiation factor 1A / IF-1 M1S52_17075 PF00180 Isocitrate/isopropylmalate dehydrogenase M1S52_17085 PF00694 Aconitase C-terminal domain M1S52_17090 PF00330 Aconitase family (aconitate hydratase) M1S52_17100 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M1S52_17100 PF03466 LysR substrate binding domain M1S52_17120 PF00293 NUDIX domain M1S52_17125 PF05524 PEP-utilising enzyme, N-terminal M1S52_17125 PF00391 PEP-utilising enzyme, mobile domain M1S52_17125 PF02896 PEP-utilising enzyme, TIM barrel domain M1S52_17125 PF01590 GAF domain M1S52_17130 PF00141 Peroxidase M1S52_17135 PF12706 Beta-lactamase superfamily domain M1S52_17140 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M1S52_17140 PF03466 LysR substrate binding domain M1S52_17150 PF02798 Glutathione S-transferase, N-terminal domain M1S52_17155 PF08279 HTH domain M1S52_17155 PF13280 WYL domain M1S52_17160 PF13419 Haloacid dehalogenase-like hydrolase M1S52_17165 PF00849 RNA pseudouridylate synthase M1S52_17165 PF01479 S4 domain M1S52_17170 PF12111 Polyribonucleotide phosphorylase C terminal M1S52_17170 PF10150 Ribonuclease E/G family M1S52_17170 PF00575 S1 RNA binding domain M1S52_17175 PF00501 AMP-binding enzyme M1S52_17175 PF13193 AMP-binding enzyme C-terminal domain M1S52_17190 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M1S52_17190 PF03466 LysR substrate binding domain M1S52_17195 PF00106 short chain dehydrogenase M1S52_17200 PF06969 HemN C-terminal domain M1S52_17200 PF04055 Radical SAM superfamily M1S52_17210 PF01554 MatE M1S52_17215 PF08028 Acyl-CoA dehydrogenase, C-terminal domain M1S52_17215 PF02770 Acyl-CoA dehydrogenase, middle domain M1S52_17215 PF02771 Acyl-CoA dehydrogenase, N-terminal domain M1S52_17220 PF08028 Acyl-CoA dehydrogenase, C-terminal domain M1S52_17220 PF02771 Acyl-CoA dehydrogenase, N-terminal domain M1S52_17225 PF03109 ABC1 family M1S52_17230 PF01197 Ribosomal protein L31 M1S52_17245 PF02537 CrcB-like protein, Camphor Resistance (CrcB) M1S52_17265 PF03884 DNA gyrase inhibitor YacG M1S52_17270 PF00753 Metallo-beta-lactamase superfamily M1S52_17275 PF00762 Ferrochelatase M1S52_17285 PF01177 Asp/Glu/Hydantoin racemase M1S52_17300 PF01206 Sulfurtransferase TusA M1S52_17305 PF00571 CBS domain M1S52_17305 PF03471 Transporter associated domain M1S52_17310 PF00795 Carbon-nitrogen hydrolase M1S52_17315 PF01588 Putative tRNA binding domain M1S52_17325 PF07963 Prokaryotic N-terminal methylation motif M1S52_17325 PF08334 Type II secretion system (T2SS), protein G M1S52_17330 PF00482 Type II secretion system (T2SS), protein F M1S52_17335 PF18074 Primosomal protein N C-terminal domain M1S52_17335 PF00271 Helicase conserved C-terminal domain M1S52_17335 PF00270 DEAD/DEAH box helicase M1S52_17335 PF18319 PriA DNA helicase Cys-rich region (CRR) domain M1S52_17335 PF17764 3′ DNA-binding domain (3′BD) M1S52_17340 PF00999 Sodium/hydrogen exchanger family M1S52_17340 PF02254 TrkA-N domain M1S52_17345 PF01430 Hsp33 protein M1S52_17355 PF00226 DnaJ domain M1S52_17355 PF01556 DnaJ C terminal domain M1S52_17365 PF01544 CorA-like Mg2+ transporter protein M1S52_17370 PF00013 KH domain M1S52_17370 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain M1S52_17370 PF01138 3' exoribonuclease family, domain 1 M1S52_17370 PF03725 3' exoribonuclease family, domain 2 M1S52_17370 PF00575 S1 RNA binding domain M1S52_17375 PF00312 Ribosomal protein S15 M1S52_17380 PF00144 Beta-lactamase M1S52_17385 PF13538 UvrD-like helicase C-terminal domain M1S52_17390 PF12705 PD-(D/E)XK nuclease superfamily M1S52_17390 PF00580 UvrD/REP helicase N-terminal domain M1S52_17390 PF13361 UvrD-like helicase C-terminal domain M1S52_17395 PF17946 RecC C-terminal domain M1S52_17405 PF03976 Polyphosphate kinase 2 (PPK2) M1S52_17415 PF01209 ubiE/COQ5 methyltransferase family M1S52_17425 PF03109 ABC1 family M1S52_17430 PF01494 FAD binding domain M1S52_17435 PF01502 Phosphoribosyl-AMP cyclohydrolase M1S52_17450 PF13244 Domain of unknown function (DUF4040) M1S52_17450 PF04039 Domain related to MnhB subunit of Na+/H+ antiporter M1S52_17450 PF00361 Proton-conducting membrane transporter M1S52_17450 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus M1S52_17455 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L M1S52_17460 PF00361 Proton-conducting membrane transporter M1S52_17465 PF01899 Na+/H+ ion antiporter subunit M1S52_17470 PF04066 Multiple resistance and pH regulation protein F (MrpF / PhaF) M1S52_17475 PF03334 Na+/H+ antiporter subunit M1S52_17480 PF02033 Ribosome-binding factor A M1S52_17485 PF04760 Translation initiation factor IF-2, N-terminal region M1S52_17485 PF08364 Bacterial translation initiation factor IF-2 associated region M1S52_17485 PF11987 Translation-initiation factor 2 M1S52_17485 PF00009 Elongation factor Tu GTP binding domain M1S52_17490 PF08529 NusA N-terminal domain M1S52_17490 PF00575 S1 RNA binding domain M1S52_17490 PF13184 NusA-like KH domain M1S52_17495 PF02576 RimP N-terminal domain M1S52_17495 PF17384 RimP C-terminal SH3 domain M1S52_17515 PF03840 Preprotein translocase SecG subunit M1S52_17520 PF00121 Triosephosphate isomerase M1S52_17525 PF00437 Type II/IV secretion system protein M1S52_17525 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain M1S52_17530 PF00482 Type II secretion system (T2SS), protein F M1S52_17540 PF06750 Bacterial Peptidase A24 N-terminal domain M1S52_17540 PF01478 Type IV leader peptidase family M1S52_17545 PF01121 Dephospho-CoA kinase M1S52_17555 PF08032 RNA 2'-O ribose methyltransferase substrate binding M1S52_17555 PF00588 SpoU rRNA Methylase family M1S52_17560 PF06865 Pyrimidine/purine nucleoside phosphorylase M1S52_17570 PF02463 RecF/RecN/SMC N terminal domain M1S52_17575 PF02622 Uncharacterized ACR, COG1678 M1S52_17580 PF03652 Holliday junction resolvase M1S52_17585 PF13533 Biotin-lipoyl like M1S52_17610 PF02805 Metal binding domain of Ada M1S52_17610 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain M1S52_17610 PF12833 Helix-turn-helix domain M1S52_17610 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain M1S52_17615 PF01066 CDP-alcohol phosphatidyltransferase M1S52_17625 PF01541 GIY-YIG catalytic domain M1S52_17625 PF02151 UvrB/uvrC motif M1S52_17625 PF08459 UvrC Helix-hairpin-helix N-terminal M1S52_17645 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain M1S52_17645 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain M1S52_17645 PF00378 Enoyl-CoA hydratase/isomerase M1S52_17650 PF02803 Thiolase, C-terminal domain M1S52_17650 PF00108 Thiolase, N-terminal domain M1S52_17670 PF00376 MerR family regulatory protein M1S52_17670 PF09278 MerR, DNA binding M1S52_17680 PF01323 DSBA-like thioredoxin domain M1S52_17695 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M1S52_17695 PF00183 Hsp90 protein M1S52_17710 PF13726 Na+-H+ antiporter family M1S52_17710 PF03553 Na+/H+ antiporter family M1S52_17715 PF00561 alpha/beta hydrolase fold M1S52_17735 PF04997 RNA polymerase Rpb1, domain 1 M1S52_17735 PF04998 RNA polymerase Rpb1, domain 5 M1S52_17735 PF04983 RNA polymerase Rpb1, domain 3 M1S52_17735 PF00623 RNA polymerase Rpb1, domain 2 M1S52_17735 PF05000 RNA polymerase Rpb1, domain 4 M1S52_17740 PF04563 RNA polymerase beta subunit M1S52_17740 PF04561 RNA polymerase Rpb2, domain 2 M1S52_17740 PF04565 RNA polymerase Rpb2, domain 3 M1S52_17740 PF10385 RNA polymerase beta subunit external 1 domain M1S52_17740 PF00562 RNA polymerase Rpb2, domain 6 M1S52_17740 PF04560 RNA polymerase Rpb2, domain 7 M1S52_17745 PF16320 Ribosomal protein L7/L12 dimerisation domain M1S52_17745 PF00542 Ribosomal protein L7/L12 C-terminal domain M1S52_17750 PF00466 Ribosomal protein L10 M1S52_17755 PF00687 Ribosomal protein L1p/L10e family M1S52_17760 PF00298 Ribosomal protein L11, RNA binding domain M1S52_17760 PF03946 Ribosomal protein L11, N-terminal domain M1S52_17765 PF00467 KOW motif M1S52_17765 PF02357 Transcription termination factor nusG M1S52_17770 PF00584 SecE/Sec61-gamma subunits of protein translocation complex M1S52_17780 PF00009 Elongation factor Tu GTP binding domain M1S52_17780 PF03144 Elongation factor Tu domain 2 M1S52_17780 PF03143 Elongation factor Tu C-terminal domain M1S52_17805 PF04715 Anthranilate synthase component I, N terminal region M1S52_17805 PF00425 chorismate binding enzyme M1S52_17810 PF13419 Haloacid dehalogenase-like hydrolase M1S52_17815 PF12401 Protein of unknown function (DUF2662) M1S52_17815 PF00498 FHA domain M1S52_17820 PF00263 Bacterial type II and III secretion system protein M1S52_17820 PF03958 Bacterial type II/III secretion system short domain M1S52_17835 PF00816 H-NS histone family M1S52_17860 PF03900 Porphobilinogen deaminase, C-terminal domain M1S52_17860 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain M1S52_17865 PF04397 LytTr DNA-binding domain M1S52_17865 PF00072 Response regulator receiver domain M1S52_17870 PF07694 5TMR of 5TMR-LYT M1S52_17870 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M1S52_17870 PF06580 Histidine kinase M1S52_17875 PF14698 Argininosuccinate lyase C-terminal M1S52_17875 PF00206 Lyase M1S52_17880 PF04362 Bacterial Fe(2+) trafficking M1S52_17885 PF01895 PhoU domain M1S52_17890 PF02321 Outer membrane efflux protein M1S52_17895 PF00892 EamA-like transporter family M1S52_17910 PF13667 ThiC-associated domain M1S52_17910 PF01964 Radical SAM ThiC family M1S52_17915 PF00293 NUDIX domain M1S52_17920 PF00149 Calcineurin-like phosphoesterase M1S52_17925 PF01258 Prokaryotic dksA/traR C4-type zinc finger M1S52_17930 PF00749 tRNA synthetases class I (E and Q), catalytic domain M1S52_17935 PF01098 Cell cycle protein M1S52_17940 PF02875 Mur ligase family, glutamate ligase domain M1S52_17940 PF08245 Mur ligase middle domain M1S52_17950 PF07670 Nucleoside recognition M1S52_17950 PF02421 Ferrous iron transport protein B M1S52_17950 PF07664 Ferrous iron transport protein B C terminus M1S52_17960 PF02899 Phage integrase, N-terminal SAM-like domain M1S52_17960 PF00589 Phage integrase family M1S52_17965 PF10411 Disulfide bond isomerase protein N-terminus M1S52_17965 PF13098 Thioredoxin-like domain M1S52_17970 PF01842 ACT domain M1S52_17970 PF00742 Homoserine dehydrogenase M1S52_17970 PF03447 Homoserine dehydrogenase, NAD binding domain M1S52_17975 PF00291 Pyridoxal-phosphate dependent enzyme M1S52_17980 PF00768 D-alanyl-D-alanine carboxypeptidase M1S52_17985 PF00196 Bacterial regulatory proteins, luxR family M1S52_17985 PF00072 Response regulator receiver domain M1S52_17990 PF00512 His Kinase A (phospho-acceptor) domain M1S52_17990 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M1S52_17995 PF02954 Bacterial regulatory protein, Fis family M1S52_17995 PF00072 Response regulator receiver domain M1S52_17995 PF00158 Sigma-54 interaction domain M1S52_18000 PF00595 PDZ domain M1S52_18000 PF03572 Peptidase family S41 M1S52_18005 PF06415 BPG-independent PGAM N-terminus (iPGM_N) M1S52_18005 PF01676 Metalloenzyme superfamily M1S52_18010 PF03739 Lipopolysaccharide export system permease LptF/LptG M1S52_18020 PF00883 Cytosol aminopeptidase family, catalytic domain M1S52_18020 PF02789 Cytosol aminopeptidase family, N-terminal domain M1S52_18040 PF00677 Lumazine binding domain M1S52_18050 PF01872 RibD C-terminal domain M1S52_18050 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region M1S52_18055 PF03477 ATP cone domain M1S52_18060 PF00909 Ammonium Transporter Family M1S52_18065 PF00543 Nitrogen regulatory protein P-II M1S52_18085 PF01636 Phosphotransferase enzyme family M1S52_18090 PF04655 Aminoglycoside/hydroxyurea antibiotic resistance kinase M1S52_18110 PF02909 Tetracyclin repressor-like, C-terminal domain M1S52_18110 PF00440 Bacterial regulatory proteins, tetR family M1S52_18115 PF07690 Major Facilitator Superfamily M1S52_18125 PF01740 STAS domain M1S52_18125 PF00916 Sulfate permease family M1S52_18130 PF00582 Universal stress protein family M1S52_18160 PF00665 Integrase core domain M1S52_18175 PF00155 Aminotransferase class I and II M1S52_18175 PF00392 Bacterial regulatory proteins, gntR family M1S52_18185 PF00701 Dihydrodipicolinate synthetase family M1S52_18200 PF03573 outer membrane porin, OprD family M1S52_18205 PF00719 Inorganic pyrophosphatase M1S52_18220 PF00501 AMP-binding enzyme M1S52_18220 PF13193 AMP-binding enzyme C-terminal domain M1S52_18225 PF03989 DNA gyrase C-terminal domain, beta-propeller M1S52_18225 PF00521 DNA gyrase/topoisomerase IV, subunit A M1S52_18230 PF07690 Major Facilitator Superfamily M1S52_18235 PF03458 UPF0126 domain M1S52_18240 PF02810 SEC-C motif M1S52_18245 PF03471 Transporter associated domain M1S52_18245 PF03741 Integral membrane protein TerC family M1S52_18255 PF07690 Major Facilitator Superfamily M1S52_18265 PF00817 impB/mucB/samB family M1S52_18265 PF11799 impB/mucB/samB family C-terminal domain M1S52_18265 PF11798 IMS family HHH motif M1S52_18285 PF11842 Domain of unknown function (DUF3362) M1S52_18285 PF04055 Radical SAM superfamily M1S52_18285 PF08497 Radical SAM N-terminal M1S52_18305 PF03358 NADPH-dependent FMN reductase M1S52_18375 PF01327 Polypeptide deformylase M1S52_18385 PF02481 DNA recombination-mediator protein A M1S52_18385 PF17782 DprA winged helix domain M1S52_18390 PF01300 Telomere recombination M1S52_18395 PF00892 EamA-like transporter family M1S52_18400 PF00440 Bacterial regulatory proteins, tetR family M1S52_18405 PF07690 Major Facilitator Superfamily M1S52_18415 PF00255 Glutathione peroxidase M1S52_18425 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain M1S52_18430 PF02874 ATP synthase alpha/beta family, beta-barrel domain M1S52_18430 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain M1S52_18435 PF00231 ATP synthase M1S52_18440 PF00306 ATP synthase alpha/beta chain, C terminal domain M1S52_18440 PF02874 ATP synthase alpha/beta family, beta-barrel domain M1S52_18440 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain M1S52_18445 PF00213 ATP synthase delta (OSCP) subunit M1S52_18450 PF00430 ATP synthase B/B' CF(0) M1S52_18455 PF00137 ATP synthase subunit C M1S52_18460 PF00119 ATP synthase A chain M1S52_18480 PF00005 ABC transporter M1S52_18485 PF00950 ABC 3 transport family M1S52_18490 PF01810 LysE type translocator M1S52_18495 PF04261 Dyp-type peroxidase family M1S52_18505 PF03949 Malic enzyme, NAD binding domain M1S52_18505 PF00390 Malic enzyme, N-terminal domain M1S52_18510 PF03485 Arginyl tRNA synthetase N terminal domain M1S52_18510 PF05746 DALR anticodon binding domain M1S52_18510 PF00750 tRNA synthetases class I (R) M1S52_18530 PF05726 Pirin C-terminal cupin domain M1S52_18530 PF02678 Pirin M1S52_18540 PF03551 Transcriptional regulator PadR-like family M1S52_18545 PF01909 Nucleotidyltransferase domain M1S52_18545 PF13427 Domain of unknown function (DUF4111) M1S52_18550 PF00117 Glutamine amidotransferase class-I M1S52_18550 PF00958 GMP synthase C terminal domain M1S52_18550 PF02540 NAD synthase M1S52_18555 PF04286 Protein of unknown function (DUF445) M1S52_18560 PF07681 DoxX M1S52_18565 PF09335 SNARE associated Golgi protein M1S52_18580 PF13614 AAA domain M1S52_18590 PF01722 BolA-like protein M1S52_18605 PF01648 4'-phosphopantetheinyl transferase superfamily M1S52_18610 PF12697 Alpha/beta hydrolase family M1S52_18630 PF16197 Ketoacyl-synthetase C-terminal extension M1S52_18630 PF00109 Beta-ketoacyl synthase, N-terminal domain M1S52_18630 PF02801 Beta-ketoacyl synthase, C-terminal domain M1S52_18630 PF00975 Thioesterase domain M1S52_18630 PF14765 Polyketide synthase dehydratase M1S52_18630 PF08242 Methyltransferase domain M1S52_18630 PF00550 Phosphopantetheine attachment site M1S52_18635 PF02771 Acyl-CoA dehydrogenase, N-terminal domain M1S52_18635 PF02770 Acyl-CoA dehydrogenase, middle domain M1S52_18635 PF00441 Acyl-CoA dehydrogenase, C-terminal domain M1S52_18640 PF00501 AMP-binding enzyme M1S52_18645 PF03472 Autoinducer binding domain M1S52_18645 PF00196 Bacterial regulatory proteins, luxR family M1S52_18655 PF00765 Autoinducer synthase M1S52_18660 PF07690 Major Facilitator Superfamily M1S52_18660 PF00083 Sugar (and other) transporter M1S52_18665 PF00378 Enoyl-CoA hydratase/isomerase M1S52_18670 PF00378 Enoyl-CoA hydratase/isomerase M1S52_18675 PF02771 Acyl-CoA dehydrogenase, N-terminal domain M1S52_18675 PF02770 Acyl-CoA dehydrogenase, middle domain M1S52_18675 PF00441 Acyl-CoA dehydrogenase, C-terminal domain M1S52_18680 PF13193 AMP-binding enzyme C-terminal domain M1S52_18680 PF00501 AMP-binding enzyme M1S52_18685 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase M1S52_18685 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase M1S52_18690 PF00171 Aldehyde dehydrogenase family M1S52_18700 PF00324 Amino acid permease M1S52_18705 PF00324 Amino acid permease M1S52_18710 PF01042 Endoribonuclease L-PSP M1S52_18715 PF00842 Alanine racemase, C-terminal domain M1S52_18715 PF01168 Alanine racemase, N-terminal domain M1S52_18720 PF01266 FAD dependent oxidoreductase M1S52_18725 PF01037 Lrp/AsnC ligand binding domain M1S52_18735 PF00593 TonB dependent receptor M1S52_18735 PF07715 TonB-dependent Receptor Plug Domain M1S52_18750 PF00849 RNA pseudouridylate synthase M1S52_18765 PF00440 Bacterial regulatory proteins, tetR family M1S52_18765 PF08361 MAATS-type transcriptional repressor, C-terminal region M1S52_18775 PF00109 Beta-ketoacyl synthase, N-terminal domain M1S52_18775 PF02801 Beta-ketoacyl synthase, C-terminal domain M1S52_18810 PF00694 Aconitase C-terminal domain M1S52_18810 PF00330 Aconitase family (aconitate hydratase) M1S52_18815 PF00285 Citrate synthase, C-terminal domain M1S52_18825 PF07729 FCD domain M1S52_18825 PF00392 Bacterial regulatory proteins, gntR family M1S52_18835 PF00155 Aminotransferase class I and II M1S52_18840 PF01565 FAD binding domain M1S52_18840 PF09330 D-lactate dehydrogenase, membrane binding M1S52_18845 PF01070 FMN-dependent dehydrogenase M1S52_18850 PF07729 FCD domain M1S52_18850 PF00392 Bacterial regulatory proteins, gntR family M1S52_18855 PF02652 L-lactate permease M1S52_18860 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I M1S52_18860 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II M1S52_18860 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III M1S52_18860 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain M1S52_18865 PF16363 GDP-mannose 4,6 dehydratase M1S52_18870 PF00342 Phosphoglucose isomerase M1S52_18875 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain M1S52_18875 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain M1S52_18875 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain M1S52_18880 PF00483 Nucleotidyl transferase M1S52_18885 PF02397 Bacterial sugar transferase M1S52_18890 PF00535 Glycosyl transferase family 2 M1S52_18920 PF08666 SAF domain M1S52_18920 PF03102 NeuB family M1S52_18935 PF02348 Cytidylyltransferase M1S52_18940 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family M1S52_18945 PF02719 Polysaccharide biosynthesis protein M1S52_18950 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain M1S52_18950 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain M1S52_18950 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain M1S52_18955 PF02563 Polysaccharide biosynthesis/export protein M1S52_18955 PF18412 Outer-membrane lipoprotein Wza C-terminal domain M1S52_18955 PF10531 SLBB domain M1S52_18960 PF01451 Low molecular weight phosphotyrosine protein phosphatase M1S52_18965 PF02706 Chain length determinant protein M1S52_18965 PF13807 G-rich domain on putative tyrosine kinase M1S52_18965 PF13614 AAA domain M1S52_18970 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase M1S52_18970 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase M1S52_18975 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase M1S52_18975 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase M1S52_18980 PF03023 Lipid II flippase MurJ M1S52_18985 PF01510 N-acetylmuramoyl-L-alanine amidase M1S52_18990 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain M1S52_18990 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain M1S52_19000 PF04185 Phosphoesterase family M1S52_19000 PF05506 Domain of unknown function (DUF756) M1S52_19010 PF03725 3' exoribonuclease family, domain 2 M1S52_19010 PF01138 3' exoribonuclease family, domain 1 M1S52_19015 PF00487 Fatty acid desaturase M1S52_19020 PF00175 Oxidoreductase NAD-binding domain M1S52_19025 PF00440 Bacterial regulatory proteins, tetR family M1S52_19030 PF00440 Bacterial regulatory proteins, tetR family M1S52_19030 PF08360 QacR-like protein, C-terminal region M1S52_19035 PF01323 DSBA-like thioredoxin domain M1S52_19045 PF13419 Haloacid dehalogenase-like hydrolase M1S52_19050 PF00106 short chain dehydrogenase M1S52_19065 PF00583 Acetyltransferase (GNAT) family M1S52_19065 PF00696 Amino acid kinase family M1S52_19070 PF09084 NMT1/THI5 like M1S52_19075 PF09084 NMT1/THI5 like M1S52_19080 PF00296 Luciferase-like monooxygenase M1S52_19085 PF00528 Binding-protein-dependent transport system inner membrane component M1S52_19090 PF00005 ABC transporter M1S52_19095 PF08362 YcdC-like protein, C-terminal region M1S52_19095 PF00440 Bacterial regulatory proteins, tetR family M1S52_19100 PF01048 Phosphorylase superfamily M1S52_19110 PF01687 Riboflavin kinase M1S52_19110 PF06574 FAD synthetase M1S52_19115 PF06827 Zinc finger found in FPG and IleRS M1S52_19115 PF00133 tRNA synthetases class I (I, L, M and V) M1S52_19115 PF08264 Anticodon-binding domain of tRNA M1S52_19120 PF01252 Signal peptidase (SPase) II M1S52_19125 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase M1S52_19165 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD M1S52_19170 PF07859 alpha/beta hydrolase fold M1S52_19190 PF03466 LysR substrate binding domain M1S52_19190 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M1S52_19195 PF01025 GrpE M1S52_19200 PF00012 Hsp70 protein M1S52_19220 PF13406 Transglycosylase SLT domain M1S52_19225 PF02222 ATP-grasp domain M1S52_19225 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain M1S52_19230 PF00731 AIR carboxylase M1S52_19240 PF01225 Mur ligase family, catalytic domain M1S52_19240 PF02875 Mur ligase family, glutamate ligase domain M1S52_19240 PF08245 Mur ligase middle domain M1S52_19250 PF01569 PAP2 superfamily M1S52_19255 PF03741 Integral membrane protein TerC family M1S52_19265 PF03738 Glutathionylspermidine synthase preATP-grasp M1S52_19270 PF00355 Rieske [2Fe-2S] domain M1S52_19275 PF01979 Amidohydrolase family M1S52_19280 PF00156 Phosphoribosyl transferase domain M1S52_19290 PF13098 Thioredoxin-like domain M1S52_19290 PF10411 Disulfide bond isomerase protein N-terminus M1S52_19295 PF01545 Cation efflux family M1S52_19295 PF16916 Dimerisation domain of Zinc Transporter M1S52_19300 PF02583 Metal-sensitive transcriptional repressor M1S52_19305 PF01926 50S ribosome-binding GTPase M1S52_19305 PF10396 GTP-binding protein TrmE N-terminus M1S52_19305 PF12631 MnmE helical domain M1S52_19310 PF02096 60Kd inner membrane protein M1S52_19310 PF14849 YidC periplasmic domain M1S52_19315 PF01809 Putative membrane protein insertion efficiency factor M1S52_19320 PF00825 Ribonuclease P M1S52_19325 PF00468 Ribosomal protein L34 M1S52_19330 PF07015 VirC1 protein M1S52_19345 PF00625 Guanylate kinase M1S52_19375 PF08275 DNA primase catalytic core, N-terminal domain M1S52_19375 PF01807 CHC2 zinc finger M1S52_19375 PF10410 DnaB-helicase binding domain of primase M1S52_19565 PF00005 ABC transporter M1S52_19565 PF09383 NIL domain M1S52_19585 PF02559 CarD-like/TRCF domain M1S52_19585 PF03461 TRCF domain M1S52_19585 PF00271 Helicase conserved C-terminal domain M1S52_19585 PF00270 DEAD/DEAH box helicase M1S52_19585 PF17757 UvrB interaction domain M1S52_19600 PF02216 B domain M1S52_19600 PF00746 LPXTG cell wall anchor motif M1S52_19600 PF01476 LysM domain M1S52_19600 PF04650 YSIRK type signal peptide M1S52_19600 PF03373 Octapeptide repeat M1S52_19665 PF00107 Zinc-binding dehydrogenase M1S52_19665 PF13823 Alcohol dehydrogenase GroES-associated M1S52_19665 PF08240 Alcohol dehydrogenase GroES-like domain M1S52_19680 PF02583 Metal-sensitive transcriptional repressor M1S52_19685 PF00107 Zinc-binding dehydrogenase M1S52_19685 PF08240 Alcohol dehydrogenase GroES-like domain M1S52_19690 PF00756 Putative esterase M1S52_19705 PF00465 Iron-containing alcohol dehydrogenase M1S52_19715 PF00724 NADH:flavin oxidoreductase / NADH oxidase family M1S52_19725 PF16925 Tetracyclin repressor-like, C-terminal domain M1S52_19725 PF00440 Bacterial regulatory proteins, tetR family M1S52_19735 PF13737 Transposase DDE domain M1S52_19770 PF00929 Exonuclease M1S52_19810 PF00268 Ribonucleotide reductase, small chain M1S52_19815 PF00317 Ribonucleotide reductase, all-alpha domain M1S52_19815 PF03477 ATP cone domain M1S52_19815 PF02867 Ribonucleotide reductase, barrel domain M1S52_19835 PF02463 RecF/RecN/SMC N terminal domain M1S52_19835 PF06470 SMC proteins Flexible Hinge Domain M1S52_19860 PF03161 LAGLIDADG DNA endonuclease family M1S52_19860 PF00154 recA bacterial DNA recombination protein M1S52_19865 PF01367 5'-3' exonuclease, C-terminal SAM fold M1S52_19865 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain M1S52_19865 PF00476 DNA polymerase family A M1S52_19865 PF01612 3'-5' exonuclease M1S52_19880 PF07733 Bacterial DNA polymerase III alpha NTPase domain M1S52_19880 PF17657 Bacterial DNA polymerase III alpha subunit finger domain M1S52_19880 PF14579 Helix-hairpin-helix motif M1S52_19880 PF02811 PHP domain M1S52_19890 PF07733 Bacterial DNA polymerase III alpha NTPase domain M1S52_19890 PF17657 Bacterial DNA polymerase III alpha subunit finger domain M1S52_19890 PF14579 Helix-hairpin-helix motif M1S52_19890 PF02811 PHP domain M1S52_19925 PF02899 Phage integrase, N-terminal SAM-like domain M1S52_19925 PF00589 Phage integrase family