locus-tag class description RU84_00005 PF08299 Bacterial dnaA protein helix-turn-helix RU84_00005 PF00308 Bacterial dnaA protein RU84_00005 PF11638 DnaA N-terminal domain RU84_00010 PF02768 DNA polymerase III beta subunit, C-terminal domain RU84_00010 PF02767 DNA polymerase III beta subunit, central domain RU84_00010 PF00712 DNA polymerase III beta subunit, N-terminal domain RU84_00015 PF02463 RecF/RecN/SMC N terminal domain RU84_00020 PF00986 DNA gyrase B subunit, carboxyl terminus RU84_00020 PF18053 DNA gyrase B subunit insert domain RU84_00020 PF00204 DNA gyrase B RU84_00020 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RU84_00020 PF01751 Toprim domain RU84_00030 PF09335 SNARE associated Golgi protein RU84_00035 PF00005 ABC transporter RU84_00035 PF12848 ABC transporter RU84_00055 PF01521 Iron-sulphur cluster biosynthesis RU84_00060 PF00561 alpha/beta hydrolase fold RU84_00065 PF03702 Anhydro-N-acetylmuramic acid kinase RU84_00070 PF00579 tRNA synthetases class I (W and Y) RU84_00105 PF00043 Glutathione S-transferase, C-terminal domain RU84_00105 PF02798 Glutathione S-transferase, N-terminal domain RU84_00115 PF00209 Sodium:neurotransmitter symporter family RU84_00125 PF01189 16S rRNA methyltransferase RsmB/F RU84_00125 PF01029 NusB family RU84_00130 PF00551 Formyl transferase RU84_00130 PF02911 Formyl transferase, C-terminal domain RU84_00135 PF00920 Dehydratase family RU84_00150 PF03466 LysR substrate binding domain RU84_00150 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RU84_00155 PF00860 Permease family RU84_00160 PF00311 Phosphoenolpyruvate carboxylase RU84_00165 PF00440 Bacterial regulatory proteins, tetR family RU84_00165 PF08361 MAATS-type transcriptional repressor, C-terminal region RU84_00170 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion RU84_00175 PF00873 AcrB/AcrD/AcrF family RU84_00185 PF00226 DnaJ domain RU84_00185 PF01556 DnaJ C terminal domain RU84_00185 PF00684 DnaJ central domain RU84_00195 PF05173 Dihydrodipicolinate reductase, C-terminus RU84_00195 PF01113 Dihydrodipicolinate reductase, N-terminus RU84_00205 PF07690 Major Facilitator Superfamily RU84_00210 PF00248 Aldo/keto reductase family RU84_00215 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RU84_00215 PF03466 LysR substrate binding domain RU84_00225 PF00155 Aminotransferase class I and II RU84_00225 PF00392 Bacterial regulatory proteins, gntR family RU84_00230 PF00107 Zinc-binding dehydrogenase RU84_00230 PF08240 Alcohol dehydrogenase GroES-like domain RU84_00235 PF03352 Methyladenine glycosylase RU84_00250 PF14815 NUDIX domain RU84_00250 PF00730 HhH-GPD superfamily base excision DNA repair protein RU84_00250 PF00633 Helix-hairpin-helix motif RU84_00250 PF10576 Iron-sulfur binding domain of endonuclease III RU84_00265 PF07043 Protein of unknown function (DUF1328) RU84_00270 PF03692 Putative zinc- or iron-chelating domain RU84_00275 PF07995 Glucose / Sorbosone dehydrogenase RU84_00280 PF16193 AAA C-terminal domain RU84_00280 PF00004 ATPase family associated with various cellular activities (AAA) RU84_00280 PF12002 MgsA AAA+ ATPase C terminal RU84_00285 PF01226 Formate/nitrite transporter RU84_00295 PF01259 SAICAR synthetase RU84_00305 PF00701 Dihydrodipicolinate synthetase family RU84_00310 PF00857 Isochorismatase family RU84_00315 PF01758 Sodium Bile acid symporter family RU84_00320 PF01554 MatE RU84_00325 PF04463 Protein of unknown function (DUF523) RU84_00330 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily RU84_00340 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily RU84_00345 PF14497 Glutathione S-transferase, C-terminal domain RU84_00345 PF02798 Glutathione S-transferase, N-terminal domain RU84_00355 PF00324 Amino acid permease RU84_00365 PF07683 Cobalamin synthesis protein cobW C-terminal domain RU84_00365 PF02492 CobW/HypB/UreG, nucleotide-binding domain RU84_00375 PF00392 Bacterial regulatory proteins, gntR family RU84_00375 PF07702 UTRA domain RU84_00380 PF05962 HutD RU84_00385 PF01175 Urocanase Rossmann-like domain RU84_00385 PF17391 Urocanase N-terminal domain RU84_00385 PF17392 Urocanase C-terminal domain RU84_00390 PF00221 Aromatic amino acid lyase RU84_00395 PF00324 Amino acid permease RU84_00400 PF01979 Amidohydrolase family RU84_00405 PF00491 Arginase family RU84_00420 PF01177 Asp/Glu/Hydantoin racemase RU84_00425 PF01380 SIS domain RU84_00430 PF14602 Hexapeptide repeat of succinyl-transferase RU84_00430 PF00132 Bacterial transferase hexapeptide (six repeats) RU84_00430 PF12804 MobA-like NTP transferase domain RU84_00435 PF04608 Phosphatidylglycerophosphatase A RU84_00440 PF00586 AIR synthase related protein, N-terminal domain RU84_00440 PF02769 AIR synthase related protein, C-terminal domain RU84_00445 PF01029 NusB family RU84_00450 PF00885 6,7-dimethyl-8-ribityllumazine synthase RU84_00455 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase RU84_00455 PF00925 GTP cyclohydrolase II RU84_00480 PF02580 D-Tyr-tRNA(Tyr) deacylase RU84_00485 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family RU84_00485 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain RU84_00490 PF00581 Rhodanese-like domain RU84_00495 PF02666 Phosphatidylserine decarboxylase RU84_00500 PF03069 Acetamidase/Formamidase family RU84_00520 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RU84_00520 PF00512 His Kinase A (phospho-acceptor) domain RU84_00520 PF00989 PAS fold RU84_00520 PF11808 Phosphate regulon sensor protein PhoR RU84_00525 PF00072 Response regulator receiver domain RU84_00525 PF00486 Transcriptional regulatory protein, C terminal RU84_00535 PF00106 short chain dehydrogenase RU84_00540 PF01554 MatE RU84_00545 PF00155 Aminotransferase class I and II RU84_00550 PF04286 Protein of unknown function (DUF445) RU84_00565 PF04262 Glutamate-cysteine ligase RU84_00570 PF02600 Disulfide bond formation protein DsbB RU84_00575 PF04717 Type VI secretion system, phage-baseplate injector RU84_00580 PF01471 Putative peptidoglycan binding domain RU84_00580 PF01476 LysM domain RU84_00580 PF01510 N-acetylmuramoyl-L-alanine amidase RU84_00610 PF05728 Uncharacterised protein family (UPF0227) RU84_00615 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RU84_00615 PF00986 DNA gyrase B subunit, carboxyl terminus RU84_00615 PF00204 DNA gyrase B RU84_00615 PF01751 Toprim domain RU84_00620 PF04115 Ureidoglycolate lyase RU84_00625 PF03561 Allantoicase repeat RU84_00630 PF01494 FAD binding domain RU84_00640 PF00860 Permease family RU84_00645 PF00576 HIUase/Transthyretin family RU84_00675 PF11412 Disulphide bond corrector protein DsbC RU84_00675 PF02683 Cytochrome C biogenesis protein transmembrane region RU84_00680 PF00990 Diguanylate cyclase, GGDEF domain RU84_00680 PF07694 5TMR of 5TMR-LYT RU84_00695 PF03960 ArsC family RU84_00700 PF03372 Endonuclease/Exonuclease/phosphatase family RU84_00705 PF00156 Phosphoribosyl transferase domain RU84_00710 PF07715 TonB-dependent Receptor Plug Domain RU84_00710 PF00593 TonB dependent receptor RU84_00720 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain RU84_00720 PF02951 Prokaryotic glutathione synthetase, N-terminal domain RU84_00725 PF04101 Glycosyltransferase family 28 C-terminal domain RU84_00725 PF03033 Glycosyltransferase family 28 N-terminal domain RU84_00730 PF08245 Mur ligase middle domain RU84_00730 PF02875 Mur ligase family, glutamate ligase domain RU84_00730 PF01225 Mur ligase family, catalytic domain RU84_00735 PF07478 D-ala D-ala ligase C-terminus RU84_00735 PF01820 D-ala D-ala ligase N-terminus RU84_00740 PF08478 POTRA domain, FtsQ-type RU84_00740 PF03799 Cell division protein FtsQ RU84_00745 PF02491 SHS2 domain inserted in FTSA RU84_00750 PF12327 FtsZ family, C-terminal domain RU84_00750 PF00091 Tubulin/FtsZ family, GTPase domain RU84_00755 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase RU84_00765 PF01551 Peptidase family M23 RU84_00770 PF00456 Transketolase, thiamine diphosphate binding domain RU84_00770 PF17831 Pyruvate dehydrogenase E1 component middle domain RU84_00775 PF02817 e3 binding domain RU84_00775 PF00364 Biotin-requiring enzyme RU84_00775 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) RU84_00785 PF01169 Uncharacterized protein family UPF0016 RU84_00790 PF00593 TonB dependent receptor RU84_00790 PF07715 TonB-dependent Receptor Plug Domain RU84_00795 PF00258 Flavodoxin RU84_00795 PF01613 Flavin reductase like domain RU84_00800 PF03692 Putative zinc- or iron-chelating domain RU84_00805 PF00571 CBS domain RU84_00805 PF00478 IMP dehydrogenase / GMP reductase domain RU84_00810 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I RU84_00810 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II RU84_00810 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III RU84_00810 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain RU84_00815 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region RU84_00815 PF01243 Pyridoxamine 5'-phosphate oxidase RU84_00820 PF17768 RecJ OB domain RU84_00820 PF02272 DHHA1 domain RU84_00820 PF01368 DHH family RU84_00830 PF03462 PCRF domain RU84_00830 PF00472 RF-1 domain RU84_00840 PF00724 NADH:flavin oxidoreductase / NADH oxidase family RU84_00845 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) RU84_00850 PF04452 RNA methyltransferase RU84_00855 PF00924 Mechanosensitive ion channel RU84_00865 PF13193 AMP-binding enzyme C-terminal domain RU84_00865 PF00501 AMP-binding enzyme RU84_00865 PF16177 Acetyl-coenzyme A synthetase N-terminus RU84_00870 PF00857 Isochorismatase family RU84_00875 PF01037 Lrp/AsnC ligand binding domain RU84_00880 PF00296 Luciferase-like monooxygenase RU84_00885 PF03358 NADPH-dependent FMN reductase RU84_00890 PF00196 Bacterial regulatory proteins, luxR family RU84_00890 PF00072 Response regulator receiver domain RU84_00900 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RU84_00900 PF00072 Response regulator receiver domain RU84_00900 PF01627 Hpt domain RU84_00900 PF00672 HAMP domain RU84_00900 PF00512 His Kinase A (phospho-acceptor) domain RU84_00905 PF04341 Protein of unknown function, DUF485 RU84_00910 PF00474 Sodium:solute symporter family RU84_00920 PF02028 BCCT, betaine/carnitine/choline family transporter RU84_00930 PF17158 Membrane-associated sensor, integral membrane domain RU84_00930 PF00990 Diguanylate cyclase, GGDEF domain RU84_00935 PF17760 UvrA interaction domain RU84_00935 PF00005 ABC transporter RU84_00935 PF17755 UvrA DNA-binding domain RU84_00940 PF16925 Tetracyclin repressor-like, C-terminal domain RU84_00940 PF00440 Bacterial regulatory proteins, tetR family RU84_00945 PF08240 Alcohol dehydrogenase GroES-like domain RU84_00945 PF00107 Zinc-binding dehydrogenase RU84_00955 PF06942 GlpM protein RU84_00960 PF08543 Phosphomethylpyrimidine kinase RU84_00960 PF03070 TENA/THI-4/PQQC family RU84_00960 PF02581 Thiamine monophosphate synthase RU84_00970 PF07690 Major Facilitator Superfamily RU84_00975 PF00436 Single-strand binding protein family RU84_00985 PF03591 AzlC protein RU84_00995 PF00324 Amino acid permease RU84_01000 PF00392 Bacterial regulatory proteins, gntR family RU84_01000 PF00155 Aminotransferase class I and II RU84_01005 PF00202 Aminotransferase class-III RU84_01010 PF00171 Aldehyde dehydrogenase family RU84_01015 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RU84_01020 PF00857 Isochorismatase family RU84_01030 PF01593 Flavin containing amine oxidoreductase RU84_01050 PF07690 Major Facilitator Superfamily RU84_01055 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RU84_01055 PF03466 LysR substrate binding domain RU84_01075 PF00248 Aldo/keto reductase family RU84_01080 PF02311 AraC-like ligand binding domain RU84_01080 PF12833 Helix-turn-helix domain RU84_01095 PF00665 Integrase core domain RU84_01095 PF13936 Helix-turn-helix domain RU84_01110 PF01638 HxlR-like helix-turn-helix RU84_01115 PF02525 Flavodoxin-like fold RU84_01130 PF02705 K+ potassium transporter RU84_01155 PF00230 Major intrinsic protein RU84_01170 PF00977 Histidine biosynthesis protein RU84_01175 PF01636 Phosphotransferase enzyme family RU84_01200 PF00977 Histidine biosynthesis protein RU84_01215 PF00117 Glutamine amidotransferase class-I RU84_01220 PF00475 Imidazoleglycerol-phosphate dehydratase RU84_01240 PF00583 Acetyltransferase (GNAT) family RU84_01245 PF02550 Acetyl-CoA hydrolase/transferase N-terminal domain RU84_01245 PF13336 Acetyl-CoA hydrolase/transferase C-terminal domain RU84_01250 PF00672 HAMP domain RU84_01250 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RU84_01250 PF00512 His Kinase A (phospho-acceptor) domain RU84_01255 PF00072 Response regulator receiver domain RU84_01255 PF00486 Transcriptional regulatory protein, C terminal RU84_01260 PF17674 HHH domain RU84_01260 PF00575 S1 RNA binding domain RU84_01260 PF09371 Tex-like protein N-terminal domain RU84_01260 PF16921 Tex protein YqgF-like domain RU84_01265 PF01740 STAS domain RU84_01265 PF00916 Sulfate permease family RU84_01270 PF00106 short chain dehydrogenase RU84_01275 PF01053 Cys/Met metabolism PLP-dependent enzyme RU84_01280 PF00005 ABC transporter RU84_01280 PF12848 ABC transporter RU84_01320 PF00529 HlyD membrane-fusion protein of T1SS RU84_01320 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion RU84_01325 PF00873 AcrB/AcrD/AcrF family RU84_01330 PF01545 Cation efflux family RU84_01360 PF00324 Amino acid permease RU84_01375 PF00749 tRNA synthetases class I (E and Q), catalytic domain RU84_01390 PF01795 MraW methylase family RU84_01400 PF00905 Penicillin binding protein transpeptidase domain RU84_01400 PF03717 Penicillin-binding Protein dimerisation domain RU84_01405 PF01225 Mur ligase family, catalytic domain RU84_01405 PF02875 Mur ligase family, glutamate ligase domain RU84_01405 PF08245 Mur ligase middle domain RU84_01410 PF01225 Mur ligase family, catalytic domain RU84_01410 PF02875 Mur ligase family, glutamate ligase domain RU84_01410 PF08245 Mur ligase middle domain RU84_01415 PF00953 Glycosyl transferase family 4 RU84_01425 PF13847 Methyltransferase domain RU84_01430 PF00912 Transglycosylase RU84_01430 PF17092 Penicillin-binding protein OB-like domain RU84_01430 PF00905 Penicillin binding protein transpeptidase domain RU84_01455 PF11741 AMIN domain RU84_01455 PF03958 Bacterial type II/III secretion system short domain RU84_01455 PF07660 Secretin and TonB N terminus short domain RU84_01455 PF00263 Bacterial type II and III secretion system protein RU84_01460 PF01202 Shikimate kinase RU84_01465 PF01761 3-dehydroquinate synthase RU84_01475 PF01645 Conserved region in glutamate synthase RU84_01475 PF04898 Glutamate synthase central domain RU84_01475 PF00310 Glutamine amidotransferases class-II RU84_01475 PF01493 GXGXG motif RU84_01480 PF07992 Pyridine nucleotide-disulphide oxidoreductase RU84_01480 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster RU84_01490 PF04011 LemA family RU84_01495 PF04536 TPM domain RU84_01515 PF11846 Virulence factor membrane-bound polymerase, C-terminal RU84_01515 PF04932 O-Antigen ligase RU84_01515 PF15864 Protein glycosylation ligase RU84_01520 PF00210 Ferritin-like domain RU84_01525 PF04324 BFD-like [2Fe-2S] binding domain RU84_01530 PF01042 Endoribonuclease L-PSP RU84_01535 PF02824 TGS domain RU84_01535 PF13291 ACT domain RU84_01535 PF04607 Region found in RelA / SpoT proteins RU84_01540 PF01192 RNA polymerase Rpb6 RU84_01545 PF00625 Guanylate kinase RU84_01550 PF02401 LytB protein RU84_01580 PF07963 Prokaryotic N-terminal methylation motif RU84_01580 PF08334 Type II secretion system (T2SS), protein G RU84_01590 PF00886 Ribosomal protein S16 RU84_01595 PF01782 RimM N-terminal domain RU84_01595 PF05239 PRC-barrel domain RU84_01600 PF01746 tRNA (Guanine-1)-methyltransferase RU84_01605 PF01245 Ribosomal protein L19 RU84_01610 PF00561 alpha/beta hydrolase fold RU84_01615 PF03280 Proteobacterial lipase chaperone protein RU84_01620 PF09157 Pseudouridine synthase II TruB, C-terminal RU84_01620 PF16198 tRNA pseudouridylate synthase B C-terminal domain RU84_01620 PF01509 TruB family pseudouridylate synthase (N terminal domain) RU84_01625 PF01925 Sulfite exporter TauE/SafE RU84_01635 PF00892 EamA-like transporter family RU84_01640 PF00892 EamA-like transporter family RU84_01645 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain RU84_01645 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain RU84_01650 PF01565 FAD binding domain RU84_01650 PF02913 FAD linked oxidases, C-terminal domain RU84_01660 PF03992 Antibiotic biosynthesis monooxygenase RU84_01665 PF02525 Flavodoxin-like fold RU84_01675 PF07690 Major Facilitator Superfamily RU84_01680 PF12805 FUSC-like inner membrane protein yccS RU84_01685 PF00080 Copper/zinc superoxide dismutase (SODC) RU84_01690 PF01594 AI-2E family transporter RU84_01695 PF13614 AAA domain RU84_01715 PF08241 Methyltransferase domain RU84_01725 PF00324 Amino acid permease RU84_01730 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase RU84_01730 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain RU84_01735 PF00202 Aminotransferase class-III RU84_01740 PF04958 Arginine N-succinyltransferase beta subunit RU84_01745 PF00171 Aldehyde dehydrogenase family RU84_01750 PF04996 Succinylarginine dihydrolase RU84_01755 PF04952 Succinylglutamate desuccinylase / Aspartoacylase family RU84_01785 PF03466 LysR substrate binding domain RU84_01785 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RU84_01790 PF00892 EamA-like transporter family RU84_01810 PF05746 DALR anticodon binding domain RU84_01810 PF02092 Glycyl-tRNA synthetase beta subunit RU84_01815 PF02091 Glycyl-tRNA synthetase alpha subunit RU84_01820 PF07690 Major Facilitator Superfamily RU84_01835 PF00571 CBS domain RU84_01840 PF04024 PspC domain RU84_01850 PF00441 Acyl-CoA dehydrogenase, C-terminal domain RU84_01850 PF12806 Acetyl-CoA dehydrogenase C-terminal like RU84_01850 PF02770 Acyl-CoA dehydrogenase, middle domain RU84_01850 PF02771 Acyl-CoA dehydrogenase, N-terminal domain RU84_01860 PF08501 Shikimate dehydrogenase substrate binding domain RU84_01860 PF18317 Shikimate 5'-dehydrogenase C-terminal domain RU84_01860 PF01488 Shikimate / quinate 5-dehydrogenase RU84_01865 PF01218 Coproporphyrinogen III oxidase RU84_01870 PF00925 GTP cyclohydrolase II RU84_01875 PF02780 Transketolase, C-terminal domain RU84_01875 PF13292 1-deoxy-D-xylulose-5-phosphate synthase RU84_01875 PF02779 Transketolase, pyrimidine binding domain RU84_01880 PF00459 Inositol monophosphatase family RU84_01885 PF00271 Helicase conserved C-terminal domain RU84_01885 PF12343 Cold shock protein DEAD box A RU84_01885 PF03880 DbpA RNA binding domain RU84_01885 PF00270 DEAD/DEAH box helicase RU84_01895 PF00005 ABC transporter RU84_01900 PF02405 Permease MlaE RU84_01910 PF05494 MlaC protein RU84_01920 PF01544 CorA-like Mg2+ transporter protein RU84_01925 PF03641 Possible lysine decarboxylase RU84_01930 PF00293 NUDIX domain RU84_01935 PF00156 Phosphoribosyl transferase domain RU84_01940 PF17191 RecG wedge domain RU84_01940 PF00270 DEAD/DEAH box helicase RU84_01940 PF00271 Helicase conserved C-terminal domain RU84_01955 PF01553 Acyltransferase RU84_01965 PF00375 Sodium:dicarboxylate symporter family RU84_01975 PF01926 50S ribosome-binding GTPase RU84_01980 PF02082 Transcriptional regulator RU84_01985 PF00970 Oxidoreductase FAD-binding domain RU84_01985 PF00175 Oxidoreductase NAD-binding domain RU84_01985 PF00042 Globin RU84_01990 PF05872 Bacterial protein of unknown function (DUF853) RU84_01995 PF01053 Cys/Met metabolism PLP-dependent enzyme RU84_02000 PF00117 Glutamine amidotransferase class-I RU84_02005 PF00338 Ribosomal protein S10p/S20e RU84_02010 PF00297 Ribosomal protein L3 RU84_02015 PF00573 Ribosomal protein L4/L1 family RU84_02020 PF00276 Ribosomal protein L23 RU84_02025 PF03947 Ribosomal Proteins L2, C-terminal domain RU84_02025 PF00181 Ribosomal Proteins L2, RNA binding domain RU84_02030 PF00203 Ribosomal protein S19 RU84_02035 PF00237 Ribosomal protein L22p/L17e RU84_02040 PF07650 KH domain RU84_02040 PF00189 Ribosomal protein S3, C-terminal domain RU84_02045 PF00252 Ribosomal protein L16p/L10e RU84_02050 PF00831 Ribosomal L29 protein RU84_02055 PF00366 Ribosomal protein S17 RU84_02060 PF00238 Ribosomal protein L14p/L23e RU84_02065 PF00467 KOW motif RU84_02065 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 RU84_02070 PF00281 Ribosomal protein L5 RU84_02070 PF00673 ribosomal L5P family C-terminus RU84_02075 PF00253 Ribosomal protein S14p/S29e RU84_02080 PF00410 Ribosomal protein S8 RU84_02085 PF00347 Ribosomal protein L6 RU84_02090 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast RU84_02095 PF03719 Ribosomal protein S5, C-terminal domain RU84_02095 PF00333 Ribosomal protein S5, N-terminal domain RU84_02100 PF00327 Ribosomal protein L30p/L7e RU84_02105 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A RU84_02110 PF00344 SecY translocase RU84_02115 PF00444 Ribosomal protein L36 RU84_02120 PF00416 Ribosomal protein S13/S18 RU84_02125 PF00411 Ribosomal protein S11 RU84_02130 PF01479 S4 domain RU84_02130 PF00163 Ribosomal protein S4/S9 N-terminal domain RU84_02135 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain RU84_02135 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain RU84_02135 PF01000 RNA polymerase Rpb3/RpoA insert domain RU84_02140 PF01196 Ribosomal protein L17 RU84_02145 PF00743 Flavin-binding monooxygenase-like RU84_02150 PF02771 Acyl-CoA dehydrogenase, N-terminal domain RU84_02150 PF02770 Acyl-CoA dehydrogenase, middle domain RU84_02150 PF00441 Acyl-CoA dehydrogenase, C-terminal domain RU84_02155 PF03937 Flavinator of succinate dehydrogenase RU84_02185 PF09526 Probable metal-binding protein (DUF2387) RU84_02190 PF01432 Peptidase family M3 RU84_02195 PF00575 S1 RNA binding domain RU84_02195 PF17876 Cold shock domain RU84_02195 PF08206 Ribonuclease B OB domain RU84_02195 PF08461 Ribonuclease R winged-helix domain RU84_02195 PF00773 RNB domain RU84_02240 PF01557 Fumarylacetoacetate (FAA) hydrolase family RU84_02245 PF12833 Helix-turn-helix domain RU84_02250 PF00892 EamA-like transporter family RU84_02255 PF03631 Virulence factor BrkB RU84_02260 PF03358 NADPH-dependent FMN reductase RU84_02285 PF02130 Uncharacterized protein family UPF0054 RU84_02290 PF02562 PhoH-like protein RU84_02295 PF00919 Uncharacterized protein family UPF0004 RU84_02295 PF01938 TRAM domain RU84_02295 PF04055 Radical SAM superfamily RU84_02300 PF01551 Peptidase family M23 RU84_02300 PF10145 Phage-related minor tail protein RU84_02300 PF01464 Transglycosylase SLT domain RU84_02310 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain RU84_02310 PF00056 lactate/malate dehydrogenase, NAD binding domain RU84_02330 PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ RU84_02335 PF01066 CDP-alcohol phosphatidyltransferase RU84_02380 PF02770 Acyl-CoA dehydrogenase, middle domain RU84_02380 PF02771 Acyl-CoA dehydrogenase, N-terminal domain RU84_02380 PF00441 Acyl-CoA dehydrogenase, C-terminal domain RU84_02385 PF00440 Bacterial regulatory proteins, tetR family RU84_02385 PF17932 Tetracyclin repressor-like, C-terminal domain RU84_02400 PF01039 Carboxyl transferase domain RU84_02405 PF00441 Acyl-CoA dehydrogenase, C-terminal domain RU84_02405 PF02771 Acyl-CoA dehydrogenase, N-terminal domain RU84_02405 PF02770 Acyl-CoA dehydrogenase, middle domain RU84_02415 PF00289 Biotin carboxylase, N-terminal domain RU84_02415 PF00364 Biotin-requiring enzyme RU84_02415 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain RU84_02415 PF02785 Biotin carboxylase C-terminal domain RU84_02435 PF13936 Helix-turn-helix domain RU84_02435 PF00665 Integrase core domain RU84_02440 PF00753 Metallo-beta-lactamase superfamily RU84_02440 PF14864 Alkyl sulfatase C-terminal RU84_02440 PF14863 Alkyl sulfatase dimerisation RU84_02470 PF04386 Stringent starvation protein B RU84_02475 PF00043 Glutathione S-transferase, C-terminal domain RU84_02475 PF13417 Glutathione S-transferase, N-terminal domain RU84_02480 PF00380 Ribosomal protein S9/S16 RU84_02485 PF00572 Ribosomal protein L13 RU84_02490 PF04166 Pyridoxal phosphate biosynthetic protein PdxA RU84_02495 PF00398 Ribosomal RNA adenine dimethylase RU84_02500 PF00149 Calcineurin-like phosphoesterase RU84_02520 PF13167 GTP-binding GTPase N-terminal RU84_02520 PF01926 50S ribosome-binding GTPase RU84_02520 PF16360 GTP-binding GTPase Middle Region RU84_02530 PF13091 PLD-like domain RU84_02535 PF10518 TAT (twin-arginine translocation) pathway signal sequence RU84_02535 PF00149 Calcineurin-like phosphoesterase RU84_02540 PF00691 OmpA family RU84_02540 PF01389 OmpA-like transmembrane domain RU84_02545 PF17152 Periplasmic sensor domain RU84_02545 PF00990 Diguanylate cyclase, GGDEF domain RU84_02580 PF07992 Pyridine nucleotide-disulphide oxidoreductase RU84_02580 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain RU84_02590 PF00753 Metallo-beta-lactamase superfamily RU84_02590 PF04273 Putative phosphatase (DUF442) RU84_02595 PF00561 alpha/beta hydrolase fold RU84_02600 PF00085 Thioredoxin RU84_02605 PF03061 Thioesterase superfamily RU84_02615 PF04461 Protein of unknown function (DUF520) RU84_02625 PF05430 S-adenosyl-L-methionine-dependent methyltransferase RU84_02625 PF01266 FAD dependent oxidoreductase RU84_02635 PF03795 YCII-related domain RU84_02640 PF04279 Intracellular septation protein A RU84_02645 PF02811 PHP domain RU84_02650 PF01062 Bestrophin, RFP-TM, chloride channel RU84_02655 PF04002 RadC-like JAB domain RU84_02660 PF04127 DNA / pantothenate metabolism flavoprotein RU84_02660 PF02441 Flavoprotein RU84_02665 PF07549 SecD/SecF GG Motif RU84_02665 PF02355 Protein export membrane protein RU84_02670 PF13721 SecD export protein N-terminal TM region RU84_02670 PF02355 Protein export membrane protein RU84_02670 PF07549 SecD/SecF GG Motif RU84_02675 PF02699 Preprotein translocase subunit RU84_02680 PF01702 Queuine tRNA-ribosyltransferase RU84_02700 PF02547 Queuosine biosynthesis protein RU84_02725 PF00436 Single-strand binding protein family RU84_02920 PF07689 KaiB domain RU84_02920 PF00512 His Kinase A (phospho-acceptor) domain RU84_02920 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RU84_02925 PF08335 GlnD PII-uridylyltransferase RU84_02925 PF03710 Glutamate-ammonia ligase adenylyltransferase RU84_02930 PF01063 Amino-transferase class IV RU84_02940 PF01522 Polysaccharide deacetylase RU84_02945 PF00534 Glycosyl transferases group 1 RU84_02945 PF13439 Glycosyltransferase Family 4 RU84_02955 PF16363 GDP-mannose 4,6 dehydratase RU84_02960 PF04321 RmlD substrate binding domain RU84_02965 PF00483 Nucleotidyl transferase RU84_02970 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase RU84_02975 PF00535 Glycosyl transferase family 2 RU84_02990 PF02938 GAD domain RU84_02990 PF01336 OB-fold nucleic acid binding domain RU84_02990 PF00152 tRNA synthetases class II (D, K and N) RU84_03000 PF07715 TonB-dependent Receptor Plug Domain RU84_03000 PF00593 TonB dependent receptor RU84_03020 PF06146 Phosphate-starvation-inducible E RU84_03025 PF12806 Acetyl-CoA dehydrogenase C-terminal like RU84_03025 PF00441 Acyl-CoA dehydrogenase, C-terminal domain RU84_03025 PF02770 Acyl-CoA dehydrogenase, middle domain RU84_03025 PF02771 Acyl-CoA dehydrogenase, N-terminal domain RU84_03030 PF02771 Acyl-CoA dehydrogenase, N-terminal domain RU84_03030 PF02770 Acyl-CoA dehydrogenase, middle domain RU84_03030 PF12806 Acetyl-CoA dehydrogenase C-terminal like RU84_03030 PF00441 Acyl-CoA dehydrogenase, C-terminal domain RU84_03040 PF00512 His Kinase A (phospho-acceptor) domain RU84_03040 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RU84_03040 PF00672 HAMP domain RU84_03045 PF00072 Response regulator receiver domain RU84_03045 PF00486 Transcriptional regulatory protein, C terminal RU84_03050 PF02696 Uncharacterized ACR, YdiU/UPF0061 family RU84_03070 PF01923 Cobalamin adenosyltransferase RU84_03075 PF07715 TonB-dependent Receptor Plug Domain RU84_03075 PF00593 TonB dependent receptor RU84_03080 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase RU84_03085 PF00291 Pyridoxal-phosphate dependent enzyme RU84_03110 PF00290 Tryptophan synthase alpha chain RU84_03115 PF01039 Carboxyl transferase domain RU84_03120 PF02875 Mur ligase family, glutamate ligase domain RU84_03120 PF08245 Mur ligase middle domain RU84_03135 PF00753 Metallo-beta-lactamase superfamily RU84_03140 PF00578 AhpC/TSA family RU84_03140 PF10417 C-terminal domain of 1-Cys peroxiredoxin RU84_03145 PF07516 SecA Wing and Scaffold domain RU84_03145 PF07517 SecA DEAD-like domain RU84_03145 PF02810 SEC-C motif RU84_03145 PF01043 SecA preprotein cross-linking domain RU84_03155 PF00083 Sugar (and other) transporter RU84_03155 PF07690 Major Facilitator Superfamily RU84_03160 PF03006 Haemolysin-III related RU84_03185 PF00378 Enoyl-CoA hydratase/isomerase RU84_03185 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain RU84_03185 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain RU84_03190 PF00108 Thiolase, N-terminal domain RU84_03190 PF02803 Thiolase, C-terminal domain RU84_03195 PF02311 AraC-like ligand binding domain RU84_03195 PF12833 Helix-turn-helix domain RU84_03200 PF02515 CoA-transferase family III RU84_03205 PF04966 Carbohydrate-selective porin, OprB family RU84_03210 PF01011 PQQ enzyme repeat RU84_03215 PF01077 Nitrite and sulphite reductase 4Fe-4S domain RU84_03215 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain RU84_03225 PF00893 Small Multidrug Resistance protein RU84_03235 PF02803 Thiolase, C-terminal domain RU84_03235 PF00108 Thiolase, N-terminal domain RU84_03245 PF13505 Outer membrane protein beta-barrel domain RU84_03245 PF00691 OmpA family RU84_03255 PF01139 tRNA-splicing ligase RtcB RU84_03260 PF00324 Amino acid permease RU84_03265 PF08468 Methyltransferase small domain N-terminal RU84_03265 PF05175 Methyltransferase small domain RU84_03270 PF00860 Permease family RU84_03280 PF01741 Large-conductance mechanosensitive channel, MscL RU84_03295 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain RU84_03295 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain RU84_03295 PF06827 Zinc finger found in FPG and IleRS RU84_03300 PF02245 Methylpurine-DNA glycosylase (MPG) RU84_03305 PF00593 TonB dependent receptor RU84_03305 PF07715 TonB-dependent Receptor Plug Domain RU84_03310 PF00724 NADH:flavin oxidoreductase / NADH oxidase family RU84_03325 PF13098 Thioredoxin-like domain RU84_03325 PF10411 Disulfide bond isomerase protein N-terminus RU84_03330 PF01571 Aminomethyltransferase folate-binding domain RU84_03340 PF04343 Protein of unknown function, DUF488 RU84_03345 PF03831 PhnA domain RU84_03345 PF08274 PhnA Zinc-Ribbon RU84_03350 PF07411 Domain of unknown function (DUF1508) RU84_03355 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) RU84_03355 PF03129 Anticodon binding domain RU84_03355 PF04073 Aminoacyl-tRNA editing domain RU84_03360 PF00873 AcrB/AcrD/AcrF family RU84_03375 PF00072 Response regulator receiver domain RU84_03380 PF00072 Response regulator receiver domain RU84_03385 PF01584 CheW-like domain RU84_03390 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain RU84_03390 PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term RU84_03395 PF01584 CheW-like domain RU84_03395 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RU84_03395 PF01627 Hpt domain RU84_03395 PF00072 Response regulator receiver domain RU84_03405 PF06969 HemN C-terminal domain RU84_03405 PF04055 Radical SAM superfamily RU84_03415 PF07687 Peptidase dimerisation domain RU84_03415 PF01546 Peptidase family M20/M25/M40 RU84_03420 PF08085 Entericidin EcnA/B family RU84_03430 PF04304 Protein of unknown function (DUF454) RU84_03435 PF17969 L,D-transpeptidase C-terminal domain RU84_03435 PF03734 L,D-transpeptidase catalytic domain RU84_03475 PF00667 FAD binding domain RU84_03475 PF00258 Flavodoxin RU84_03475 PF00175 Oxidoreductase NAD-binding domain RU84_03485 PF12805 FUSC-like inner membrane protein yccS RU84_03490 PF07690 Major Facilitator Superfamily RU84_03495 PF00881 Nitroreductase family RU84_03505 PF01235 Sodium:alanine symporter family RU84_03510 PF01734 Patatin-like phospholipase RU84_03515 PF13291 ACT domain RU84_03515 PF00291 Pyridoxal-phosphate dependent enzyme RU84_03520 PF05992 SbmA/BacA-like family RU84_03525 PF01431 Peptidase family M13 RU84_03525 PF05649 Peptidase family M13 RU84_03550 PF02637 GatB domain RU84_03550 PF02934 GatB/GatE catalytic domain RU84_03555 PF01425 Amidase RU84_03560 PF02686 Glu-tRNAGln amidotransferase C subunit RU84_03570 PF04085 rod shape-determining protein MreC RU84_03575 PF04093 rod shape-determining protein MreD RU84_03580 PF02545 Maf-like protein RU84_03585 PF10150 Ribonuclease E/G family RU84_03585 PF00575 S1 RNA binding domain RU84_03595 PF03007 Wax ester synthase-like Acyl-CoA acyltransferase domain RU84_03595 PF06974 Protein of unknown function (DUF1298) RU84_03600 PF01507 Phosphoadenosine phosphosulfate reductase family RU84_03615 PF02525 Flavodoxin-like fold RU84_03635 PF02673 Bacitracin resistance protein BacA RU84_03640 PF12833 Helix-turn-helix domain RU84_03640 PF06719 AraC-type transcriptional regulator N-terminus RU84_03645 PF00550 Phosphopantetheine attachment site RU84_03645 PF08659 KR domain RU84_03645 PF02801 Beta-ketoacyl synthase, C-terminal domain RU84_03645 PF00109 Beta-ketoacyl synthase, N-terminal domain RU84_03645 PF16197 Ketoacyl-synthetase C-terminal extension RU84_03645 PF09277 Erythronolide synthase, docking RU84_03645 PF08990 Erythronolide synthase docking RU84_03645 PF14765 Polyketide synthase dehydratase RU84_03645 PF08240 Alcohol dehydrogenase GroES-like domain RU84_03645 PF00698 Acyl transferase domain RU84_03650 PF01965 DJ-1/PfpI family RU84_03660 PF00324 Amino acid permease RU84_03665 PF04303 PrpF protein RU84_03670 PF00348 Polyprenyl synthetase RU84_03675 PF04237 YjbR RU84_03680 PF01145 SPFH domain / Band 7 family RU84_03690 PF01734 Patatin-like phospholipase RU84_03710 PF08019 Phosphoethanolamine transferase EptA/EptB RU84_03710 PF00884 Sulfatase RU84_03715 PF00486 Transcriptional regulatory protein, C terminal RU84_03715 PF00072 Response regulator receiver domain RU84_03720 PF08521 Two-component sensor kinase N-terminal RU84_03720 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RU84_03720 PF00512 His Kinase A (phospho-acceptor) domain RU84_03730 PF00909 Ammonium Transporter Family RU84_03735 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RU84_03735 PF03466 LysR substrate binding domain RU84_03755 PF00133 tRNA synthetases class I (I, L, M and V) RU84_03755 PF08264 Anticodon-binding domain of tRNA RU84_03755 PF10458 Valyl tRNA synthetase tRNA binding arm RU84_03775 PF01906 Putative heavy-metal-binding RU84_03780 PF01906 Putative heavy-metal-binding RU84_03785 PF02321 Outer membrane efflux protein RU84_03790 PF00873 AcrB/AcrD/AcrF family RU84_03795 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion RU84_03795 PF00529 HlyD membrane-fusion protein of T1SS RU84_03800 PF01569 PAP2 superfamily RU84_03810 PF00348 Polyprenyl synthetase RU84_03820 PF00829 Ribosomal prokaryotic L21 protein RU84_03825 PF01016 Ribosomal L27 protein RU84_03830 PF03548 Outer membrane lipoprotein carrier protein LolA RU84_03840 PF02403 Seryl-tRNA synthetase N-terminal domain RU84_03840 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) RU84_03845 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases RU84_03845 PF10414 Sirohaem synthase dimerisation region RU84_03845 PF14824 Sirohaem biosynthesis protein central RU84_03850 PF00588 SpoU rRNA Methylase family RU84_03855 PF01638 HxlR-like helix-turn-helix RU84_03860 PF03358 NADPH-dependent FMN reductase RU84_03865 PF13520 Amino acid permease RU84_03870 PF00465 Iron-containing alcohol dehydrogenase RU84_03880 PF03099 Biotin/lipoate A/B protein ligase family RU84_03885 PF04359 Protein of unknown function (DUF493) RU84_03890 PF04546 Sigma-70, non-essential region RU84_03890 PF00140 Sigma-70 factor, region 1.2 RU84_03890 PF04542 Sigma-70 region 2 RU84_03890 PF04539 Sigma-70 region 3 RU84_03890 PF04545 Sigma-70, region 4 RU84_03890 PF03979 Sigma-70 factor, region 1.1 RU84_03915 PF00285 Citrate synthase, C-terminal domain RU84_03920 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit RU84_03925 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit RU84_03930 PF00890 FAD binding domain RU84_03930 PF02910 Fumarate reductase flavoprotein C-term RU84_03935 PF13085 2Fe-2S iron-sulfur cluster binding domain RU84_03940 PF16870 2-oxoglutarate dehydrogenase C-terminal RU84_03940 PF16078 2-oxoglutarate dehydrogenase N-terminus RU84_03940 PF00676 Dehydrogenase E1 component RU84_03940 PF02779 Transketolase, pyrimidine binding domain RU84_03945 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) RU84_03945 PF00364 Biotin-requiring enzyme RU84_03945 PF02817 e3 binding domain RU84_03950 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain RU84_03950 PF07992 Pyridine nucleotide-disulphide oxidoreductase RU84_03955 PF08442 ATP-grasp domain RU84_03955 PF00549 CoA-ligase RU84_03960 PF00549 CoA-ligase RU84_03960 PF02629 CoA binding domain RU84_03965 PF00579 tRNA synthetases class I (W and Y) RU84_03970 PF05661 Protein of unknown function (DUF808) RU84_03975 PF04228 Putative neutral zinc metallopeptidase RU84_03980 PF00999 Sodium/hydrogen exchanger family RU84_03995 PF09587 Bacterial capsule synthesis protein PGA_cap RU84_04005 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain RU84_04010 PF00582 Universal stress protein family RU84_04015 PF00132 Bacterial transferase hexapeptide (six repeats) RU84_04020 PF01042 Endoribonuclease L-PSP RU84_04025 PF00440 Bacterial regulatory proteins, tetR family RU84_04030 PF03449 Transcription elongation factor, N-terminal RU84_04030 PF01272 Transcription elongation factor, GreA/GreB, C-term RU84_04035 PF02142 MGS-like domain RU84_04035 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain RU84_04035 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain RU84_04040 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain RU84_04040 PF00117 Glutamine amidotransferase class-I RU84_04055 PF01985 CRS1 / YhbY (CRM) domain RU84_04060 PF01728 FtsJ-like methyltransferase RU84_04065 PF00004 ATPase family associated with various cellular activities (AAA) RU84_04065 PF17862 AAA+ lid domain RU84_04065 PF06480 FtsH Extracellular RU84_04065 PF01434 Peptidase family M41 RU84_04070 PF00809 Pterin binding enzyme RU84_04090 PF09423 PhoD-like phosphatase RU84_04090 PF16655 PhoD-like phosphatase, N-terminal domain RU84_04105 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain RU84_04105 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain RU84_04120 PF00083 Sugar (and other) transporter RU84_04125 PF00370 FGGY family of carbohydrate kinases, N-terminal domain RU84_04125 PF02782 FGGY family of carbohydrate kinases, C-terminal domain RU84_04130 PF01266 FAD dependent oxidoreductase RU84_04130 PF16901 C-terminal domain of alpha-glycerophosphate oxidase RU84_04135 PF17297 Phosphoenolpyruvate carboxykinase N-terminal domain RU84_04135 PF00821 Phosphoenolpyruvate carboxykinase C-terminal P-loop domain RU84_04140 PF00781 Diacylglycerol kinase catalytic domain RU84_04145 PF00149 Calcineurin-like phosphoesterase RU84_04155 PF00166 Chaperonin 10 Kd subunit RU84_04160 PF00118 TCP-1/cpn60 chaperonin family RU84_04165 PF01219 Prokaryotic diacylglycerol kinase RU84_04170 PF00753 Metallo-beta-lactamase superfamily RU84_04175 PF03009 Glycerophosphoryl diester phosphodiesterase family RU84_04180 PF00873 AcrB/AcrD/AcrF family RU84_04190 PF01435 Peptidase family M48 RU84_04195 PF01464 Transglycosylase SLT domain RU84_04200 PF01171 PP-loop family RU84_04210 PF00497 Bacterial extracellular solute-binding proteins, family 3 RU84_04210 PF01464 Transglycosylase SLT domain RU84_04215 PF01272 Transcription elongation factor, GreA/GreB, C-term RU84_04215 PF03449 Transcription elongation factor, N-terminal RU84_04230 PF13936 Helix-turn-helix domain RU84_04230 PF00665 Integrase core domain RU84_04235 PF00501 AMP-binding enzyme RU84_04235 PF00975 Thioesterase domain RU84_04235 PF13193 AMP-binding enzyme C-terminal domain RU84_04235 PF00668 Condensation domain RU84_04235 PF00550 Phosphopantetheine attachment site RU84_04255 PF09857 Putative toxin of bacterial toxin-antitoxin pair RU84_04275 PF00881 Nitroreductase family RU84_04290 PF02595 Glycerate kinase family RU84_04295 PF00384 Molybdopterin oxidoreductase RU84_04300 PF02634 FdhD/NarQ family RU84_04305 PF06803 Protein of unknown function (DUF1232) RU84_04310 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain RU84_04310 PF11890 Domain of unknown function (DUF3410) RU84_04310 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain RU84_04315 PF00152 tRNA synthetases class II (D, K and N) RU84_04325 PF18073 Rubredoxin metal binding domain RU84_04330 PF00324 Amino acid permease RU84_04340 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain RU84_04340 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain RU84_04345 PF01678 Diaminopimelate epimerase RU84_04350 PF01810 LysE type translocator RU84_04355 PF00589 Phage integrase family RU84_04355 PF02899 Phage integrase, N-terminal SAM-like domain RU84_04360 PF01012 Electron transfer flavoprotein domain RU84_04365 PF01012 Electron transfer flavoprotein domain RU84_04365 PF00766 Electron transfer flavoprotein FAD-binding domain RU84_04370 PF03989 DNA gyrase C-terminal domain, beta-propeller RU84_04370 PF00521 DNA gyrase/topoisomerase IV, subunit A RU84_04385 PF00535 Glycosyl transferase family 2 RU84_04405 PF13533 Biotin-lipoyl like RU84_04415 PF00266 Aminotransferase class-V RU84_04425 PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 RU84_04435 PF12704 MacB-like periplasmic core domain RU84_04435 PF02687 FtsX-like permease family RU84_04440 PF00005 ABC transporter RU84_04455 PF00753 Metallo-beta-lactamase superfamily RU84_04455 PF13567 Domain of unknown function (DUF4131) RU84_04455 PF03772 Competence protein RU84_04465 PF01343 Peptidase family S49 RU84_04465 PF06965 Na+/H+ antiporter 1 RU84_04470 PF12697 Alpha/beta hydrolase family RU84_04475 PF00551 Formyl transferase RU84_04480 PF02769 AIR synthase related protein, C-terminal domain RU84_04480 PF00586 AIR synthase related protein, N-terminal domain RU84_04485 PF01594 AI-2E family transporter RU84_04490 PF11638 DnaA N-terminal domain RU84_04490 PF00308 Bacterial dnaA protein RU84_04490 PF08299 Bacterial dnaA protein helix-turn-helix RU84_04505 PF00665 Integrase core domain RU84_04505 PF13936 Helix-turn-helix domain RU84_04530 PF08032 RNA 2'-O ribose methyltransferase substrate binding RU84_04530 PF00588 SpoU rRNA Methylase family RU84_04535 PF00316 Fructose-1-6-bisphosphatase, N-terminal domain RU84_04545 PF00691 OmpA family RU84_04550 PF04052 TolB amino-terminal domain RU84_04550 PF07676 WD40-like Beta Propeller Repeat RU84_04560 PF02472 Biopolymer transport protein ExbD/TolR RU84_04565 PF01618 MotA/TolQ/ExbB proton channel family RU84_04570 PF03061 Thioesterase superfamily RU84_04575 PF07687 Peptidase dimerisation domain RU84_04575 PF01546 Peptidase family M20/M25/M40 RU84_04580 PF05496 Holliday junction DNA helicase RuvB P-loop domain RU84_04580 PF05491 RuvB C-terminal winged helix domain RU84_04580 PF17864 RuvB AAA lid domain RU84_04585 PF07499 RuvA, C-terminal domain RU84_04585 PF01330 RuvA N terminal domain RU84_04590 PF01966 HD domain RU84_04595 PF02769 AIR synthase related protein, C-terminal domain RU84_04595 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain RU84_04595 PF18076 Formylglycinamide ribonucleotide amidotransferase N-terminal RU84_04600 PF07690 Major Facilitator Superfamily RU84_04610 PF01784 NIF3 (NGG1p interacting factor 3) RU84_04615 PF00378 Enoyl-CoA hydratase/isomerase RU84_04620 PF00293 NUDIX domain RU84_04620 PF01467 Cytidylyltransferase-like RU84_04630 PF00578 AhpC/TSA family RU84_04645 PF06508 Queuosine biosynthesis protein QueC RU84_04655 PF00132 Bacterial transferase hexapeptide (six repeats) RU84_04655 PF14805 Tetrahydrodipicolinate N-succinyltransferase N-terminal RU84_04655 PF14602 Hexapeptide repeat of succinyl-transferase RU84_04665 PF03466 LysR substrate binding domain RU84_04665 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RU84_04670 PF12857 TOBE-like domain RU84_04670 PF00005 ABC transporter RU84_04675 PF00528 Binding-protein-dependent transport system inner membrane component RU84_04680 PF00528 Binding-protein-dependent transport system inner membrane component RU84_04695 PF01063 Amino-transferase class IV RU84_04700 PF02618 YceG-like family RU84_04705 PF02223 Thymidylate kinase RU84_04715 PF00890 FAD binding domain RU84_04715 PF02910 Fumarate reductase flavoprotein C-term RU84_04720 PF13180 PDZ domain RU84_04730 PF03144 Elongation factor Tu domain 2 RU84_04730 PF00679 Elongation factor G C-terminus RU84_04730 PF00009 Elongation factor Tu GTP binding domain RU84_04730 PF06421 GTP-binding protein LepA C-terminus RU84_04735 PF10502 Signal peptidase, peptidase S26 RU84_04745 PF14622 Ribonuclease-III-like RU84_04745 PF00035 Double-stranded RNA binding motif RU84_04750 PF01926 50S ribosome-binding GTPase RU84_04750 PF07650 KH domain RU84_04760 PF11967 Recombination protein O N terminal RU84_04760 PF02565 Recombination protein O C terminal RU84_04765 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ RU84_04770 PF06175 tRNA-(MS[2]IO[6]A)-hydroxylase (MiaE) RU84_04775 PF00106 short chain dehydrogenase RU84_04800 PF00012 Hsp70 protein RU84_04820 PF00990 Diguanylate cyclase, GGDEF domain RU84_04820 PF17151 Periplasmic sensor domain RU84_04830 PF17757 UvrB interaction domain RU84_04830 PF02151 UvrB/uvrC motif RU84_04830 PF00271 Helicase conserved C-terminal domain RU84_04830 PF04851 Type III restriction enzyme, res subunit RU84_04830 PF12344 Ultra-violet resistance protein B RU84_04840 PF00892 EamA-like transporter family RU84_04845 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain RU84_04845 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain RU84_04860 PF01018 GTP1/OBG RU84_04860 PF01926 50S ribosome-binding GTPase RU84_04865 PF00696 Amino acid kinase family RU84_04865 PF01472 PUA domain RU84_04875 PF07759 Protein of unknown function (DUF1615) RU84_04880 PF01207 Dihydrouridine synthase (Dus) RU84_04885 PF03060 Nitronate monooxygenase RU84_04900 PF02350 UDP-N-acetylglucosamine 2-epimerase RU84_04930 PF00875 DNA photolyase RU84_04930 PF03441 FAD binding domain of DNA photolyase RU84_04935 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase RU84_04940 PF07992 Pyridine nucleotide-disulphide oxidoreductase RU84_04945 PF07943 Penicillin-binding protein 5, C-terminal domain RU84_04945 PF00768 D-alanyl-D-alanine carboxypeptidase RU84_04955 PF03971 Monomeric isocitrate dehydrogenase RU84_04960 PF00849 RNA pseudouridylate synthase RU84_04965 PF00180 Isocitrate/isopropylmalate dehydrogenase RU84_04980 PF06779 Uncharacterised MFS-type transporter YbfB RU84_04985 PF03466 LysR substrate binding domain RU84_04985 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RU84_04995 PF02567 Phenazine biosynthesis-like protein RU84_05000 PF05193 Peptidase M16 inactive domain RU84_05000 PF00675 Insulinase (Peptidase family M16) RU84_05025 PF02581 Thiamine monophosphate synthase RU84_05030 PF00202 Aminotransferase class-III RU84_05040 PF00849 RNA pseudouridylate synthase RU84_05045 PF00271 Helicase conserved C-terminal domain RU84_05045 PF12137 RNA polymerase recycling family C-terminal RU84_05045 PF18337 RapA N-terminal Tudor like domain RU84_05045 PF00176 SNF2 family N-terminal domain RU84_05045 PF18339 RapA N-terminal Tudor like domain 1 RU84_05055 PF00440 Bacterial regulatory proteins, tetR family RU84_05060 PF00111 2Fe-2S iron-sulfur cluster binding domain RU84_05060 PF00970 Oxidoreductase FAD-binding domain RU84_05060 PF00175 Oxidoreductase NAD-binding domain RU84_05065 PF00487 Fatty acid desaturase RU84_05070 PF02525 Flavodoxin-like fold RU84_05085 PF00202 Aminotransferase class-III RU84_05090 PF00282 Pyridoxal-dependent decarboxylase conserved domain RU84_05095 PF00171 Aldehyde dehydrogenase family RU84_05100 PF01037 Lrp/AsnC ligand binding domain RU84_05105 PF00205 Thiamine pyrophosphate enzyme, central domain RU84_05105 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain RU84_05105 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain RU84_05110 PF00324 Amino acid permease RU84_05115 PF12849 PBP superfamily domain RU84_05120 PF00528 Binding-protein-dependent transport system inner membrane component RU84_05125 PF00528 Binding-protein-dependent transport system inner membrane component RU84_05130 PF00005 ABC transporter RU84_05135 PF08496 Peptidase family S49 N-terminal RU84_05135 PF01343 Peptidase family S49 RU84_05150 PF00206 Lyase RU84_05150 PF08328 Adenylosuccinate lyase C-terminal RU84_05155 PF04356 Protein of unknown function (DUF489) RU84_05165 PF00293 NUDIX domain RU84_05165 PF13344 Haloacid dehalogenase-like hydrolase RU84_05170 PF00132 Bacterial transferase hexapeptide (six repeats) RU84_05175 PF07943 Penicillin-binding protein 5, C-terminal domain RU84_05175 PF00768 D-alanyl-D-alanine carboxypeptidase RU84_05190 PF01975 Survival protein SurE RU84_05195 PF01476 LysM domain RU84_05195 PF01551 Peptidase family M23 RU84_05200 PF03466 LysR substrate binding domain RU84_05200 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RU84_05205 PF05362 Lon protease (S16) C-terminal proteolytic domain RU84_05205 PF13654 AAA domain RU84_05210 PF07690 Major Facilitator Superfamily RU84_05215 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily RU84_05220 PF13593 SBF-like CPA transporter family (DUF4137) RU84_05225 PF01197 Ribosomal protein L31 RU84_05230 PF00563 EAL domain RU84_05230 PF12792 CSS motif domain associated with EAL RU84_05240 PF04055 Radical SAM superfamily RU84_05245 PF08207 Elongation factor P (EF-P) KOW-like domain RU84_05245 PF01132 Elongation factor P (EF-P) OB domain RU84_05245 PF09285 Elongation factor P, C-terminal RU84_05250 PF13722 5TM C-terminal transporter carbon starvation CstA RU84_05250 PF02554 Carbon starvation protein CstA RU84_05255 PF04328 Selenoprotein, putative RU84_05265 PF16884 N-terminal domain of oxidoreductase RU84_05265 PF00107 Zinc-binding dehydrogenase RU84_05270 PF00106 short chain dehydrogenase RU84_05275 PF12852 Cupin RU84_05275 PF12833 Helix-turn-helix domain RU84_05290 PF17954 Quercetinase C-terminal cupin domain RU84_05290 PF02678 Pirin RU84_05295 PF00291 Pyridoxal-phosphate dependent enzyme RU84_05300 PF13309 HTH domain RU84_05300 PF08348 YheO-like PAS domain RU84_05310 PF13193 AMP-binding enzyme C-terminal domain RU84_05310 PF00668 Condensation domain RU84_05310 PF00550 Phosphopantetheine attachment site RU84_05310 PF00501 AMP-binding enzyme RU84_05315 PF13193 AMP-binding enzyme C-terminal domain RU84_05315 PF00975 Thioesterase domain RU84_05315 PF00550 Phosphopantetheine attachment site RU84_05315 PF00668 Condensation domain RU84_05315 PF00501 AMP-binding enzyme RU84_05320 PF01032 FecCD transport family RU84_05325 PF01032 FecCD transport family RU84_05330 PF00005 ABC transporter RU84_05335 PF01497 Periplasmic binding protein RU84_05340 PF00593 TonB dependent receptor RU84_05340 PF07715 TonB-dependent Receptor Plug Domain RU84_05345 PF13434 L-lysine 6-monooxygenase (NADPH-requiring) RU84_05350 PF00550 Phosphopantetheine attachment site RU84_05350 PF00668 Condensation domain RU84_05350 PF00501 AMP-binding enzyme RU84_05360 PF00550 Phosphopantetheine attachment site RU84_05360 PF00857 Isochorismatase family RU84_05365 PF00282 Pyridoxal-dependent decarboxylase conserved domain RU84_05375 PF00005 ABC transporter RU84_05375 PF00664 ABC transporter transmembrane region RU84_05380 PF00664 ABC transporter transmembrane region RU84_05380 PF00005 ABC transporter RU84_05385 PF00975 Thioesterase domain RU84_05395 PF00425 chorismate binding enzyme RU84_05405 PF01208 Uroporphyrinogen decarboxylase (URO-D) RU84_05410 PF05675 Protein of unknown function (DUF817) RU84_05425 PF00144 Beta-lactamase RU84_05435 PF01799 [2Fe-2S] binding domain RU84_05435 PF00111 2Fe-2S iron-sulfur cluster binding domain RU84_05440 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase RU84_05440 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain RU84_05455 PF00218 Indole-3-glycerol phosphate synthase RU84_05460 PF02885 Glycosyl transferase family, helical bundle domain RU84_05460 PF00591 Glycosyl transferase family, a/b domain RU84_05465 PF00593 TonB dependent receptor RU84_05465 PF07715 TonB-dependent Receptor Plug Domain RU84_05470 PF11838 ERAP1-like C-terminal domain RU84_05470 PF01433 Peptidase family M1 domain RU84_05475 PF00117 Glutamine amidotransferase class-I RU84_05485 PF00854 POT family RU84_05495 PF04345 Chorismate lyase RU84_05500 PF01040 UbiA prenyltransferase family RU84_05535 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain RU84_05535 PF02777 Iron/manganese superoxide dismutases, C-terminal domain RU84_05540 PF01784 NIF3 (NGG1p interacting factor 3) RU84_05545 PF13180 PDZ domain RU84_05550 PF01743 Poly A polymerase head domain RU84_05550 PF12627 Probable RNA and SrmB- binding site of polymerase A RU84_05555 PF00390 Malic enzyme, N-terminal domain RU84_05555 PF03949 Malic enzyme, NAD binding domain RU84_05555 PF01515 Phosphate acetyl/butaryl transferase RU84_05560 PF00563 EAL domain RU84_05560 PF00990 Diguanylate cyclase, GGDEF domain RU84_05560 PF03707 Bacterial signalling protein N terminal repeat RU84_05565 PF04452 RNA methyltransferase RU84_05570 PF02219 Methylenetetrahydrofolate reductase RU84_05575 PF05221 S-adenosyl-L-homocysteine hydrolase RU84_05575 PF00670 S-adenosyl-L-homocysteine hydrolase, NAD binding domain RU84_05590 PF00441 Acyl-CoA dehydrogenase, C-terminal domain RU84_05590 PF02771 Acyl-CoA dehydrogenase, N-terminal domain RU84_05590 PF09317 Domain of unknown function (DUF1974) RU84_05595 PF04055 Radical SAM superfamily RU84_05600 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain RU84_05600 PF07992 Pyridine nucleotide-disulphide oxidoreductase RU84_05615 PF07690 Major Facilitator Superfamily RU84_05625 PF00557 Metallopeptidase family M24 RU84_05630 PF00318 Ribosomal protein S2 RU84_05635 PF00889 Elongation factor TS RU84_05645 PF12833 Helix-turn-helix domain RU84_05665 PF05036 Sporulation related domain RU84_05665 PF03330 Lytic transglycolase RU84_05670 PF13406 Transglycosylase SLT domain RU84_05675 PF01098 Cell cycle protein RU84_05685 PF14819 Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term RU84_05685 PF14489 QueF-like protein RU84_05690 PF01061 ABC-2 type transporter RU84_05695 PF00005 ABC transporter RU84_05720 PF00464 Serine hydroxymethyltransferase RU84_05725 PF02321 Outer membrane efflux protein RU84_05730 PF00873 AcrB/AcrD/AcrF family RU84_05735 PF13533 Biotin-lipoyl like RU84_05740 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RU84_05740 PF03466 LysR substrate binding domain RU84_05745 PF00497 Bacterial extracellular solute-binding proteins, family 3 RU84_05750 PF00528 Binding-protein-dependent transport system inner membrane component RU84_05755 PF00528 Binding-protein-dependent transport system inner membrane component RU84_05760 PF00005 ABC transporter RU84_05765 PF00893 Small Multidrug Resistance protein RU84_05770 PF00037 4Fe-4S binding domain RU84_05780 PF00155 Aminotransferase class I and II RU84_05780 PF00392 Bacterial regulatory proteins, gntR family RU84_05785 PF02567 Phenazine biosynthesis-like protein RU84_05790 PF00970 Oxidoreductase FAD-binding domain RU84_05790 PF00175 Oxidoreductase NAD-binding domain RU84_05795 PF18389 TrmO C-terminal domain RU84_05795 PF01980 tRNA-methyltransferase O RU84_05805 PF00437 Type II/IV secretion system protein RU84_05815 PF00072 Response regulator receiver domain RU84_05815 PF00486 Transcriptional regulatory protein, C terminal RU84_05820 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RU84_05820 PF00512 His Kinase A (phospho-acceptor) domain RU84_05820 PF08521 Two-component sensor kinase N-terminal RU84_05830 PF00293 NUDIX domain RU84_05840 PF14814 Bifunctional transglycosylase second domain RU84_05840 PF00912 Transglycosylase RU84_05840 PF00905 Penicillin binding protein transpeptidase domain RU84_05845 PF01513 ATP-NAD kinase RU84_05850 PF07023 Protein of unknown function (DUF1315) RU84_05855 PF02885 Glycosyl transferase family, helical bundle domain RU84_05855 PF00591 Glycosyl transferase family, a/b domain RU84_05860 PF00375 Sodium:dicarboxylate symporter family RU84_05865 PF02770 Acyl-CoA dehydrogenase, middle domain RU84_05865 PF02771 Acyl-CoA dehydrogenase, N-terminal domain RU84_05865 PF00441 Acyl-CoA dehydrogenase, C-terminal domain RU84_05870 PF00756 Putative esterase RU84_05875 PF01842 ACT domain RU84_05875 PF01817 Chorismate mutase type II RU84_05875 PF00800 Prephenate dehydratase RU84_05880 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) RU84_05890 PF01546 Peptidase family M20/M25/M40 RU84_05890 PF07687 Peptidase dimerisation domain RU84_05895 PF00753 Metallo-beta-lactamase superfamily RU84_05905 PF03883 Peroxide stress protein YaaA RU84_05915 PF05690 Thiazole biosynthesis protein ThiG RU84_05925 PF04241 Protein of unknown function (DUF423) RU84_05930 PF04542 Sigma-70 region 2 RU84_05930 PF04545 Sigma-70, region 4 RU84_05930 PF00140 Sigma-70 factor, region 1.2 RU84_05940 PF00313 'Cold-shock' DNA-binding domain RU84_05945 PF00271 Helicase conserved C-terminal domain RU84_05945 PF00270 DEAD/DEAH box helicase RU84_05955 PF00881 Nitroreductase family RU84_05960 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus RU84_05960 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus RU84_05980 PF01180 Dihydroorotate dehydrogenase RU84_05985 PF02674 Colicin V production protein RU84_05990 PF00156 Phosphoribosyl transferase domain RU84_06005 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain RU84_06005 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain RU84_06010 PF01435 Peptidase family M48 RU84_06015 PF09424 Yqey-like protein RU84_06020 PF01165 Ribosomal protein S21 RU84_06025 PF00814 Glycoprotease family RU84_06045 PF00069 Protein kinase domain RU84_06070 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB RU84_06070 PF08479 POTRA domain, ShlB-type RU84_06070 PF17287 POTRA domain RU84_06120 PF03466 LysR substrate binding domain RU84_06120 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RU84_06125 PF00202 Aminotransferase class-III RU84_06130 PF00171 Aldehyde dehydrogenase family RU84_06135 PF00324 Amino acid permease RU84_06165 PF04076 Bacterial OB fold (BOF) protein RU84_06190 PF00561 alpha/beta hydrolase fold RU84_06195 PF03616 Sodium/glutamate symporter RU84_06205 PF07729 FCD domain RU84_06205 PF00392 Bacterial regulatory proteins, gntR family RU84_06260 PF00083 Sugar (and other) transporter RU84_06260 PF08946 Osmosensory transporter coiled coil RU84_06280 PF00155 Aminotransferase class I and II RU84_06285 PF06826 Predicted Permease Membrane Region RU84_06285 PF02080 TrkA-C domain RU84_06300 PF04403 Paraquat-inducible protein A RU84_06305 PF02470 MlaD protein RU84_06315 PF00576 HIUase/Transthyretin family RU84_06325 PF00486 Transcriptional regulatory protein, C terminal RU84_06325 PF00072 Response regulator receiver domain RU84_06330 PF00512 His Kinase A (phospho-acceptor) domain RU84_06330 PF00672 HAMP domain RU84_06330 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RU84_06370 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RU84_06370 PF08521 Two-component sensor kinase N-terminal RU84_06370 PF00512 His Kinase A (phospho-acceptor) domain RU84_06375 PF00486 Transcriptional regulatory protein, C terminal RU84_06375 PF00072 Response regulator receiver domain RU84_06395 PF01177 Asp/Glu/Hydantoin racemase RU84_06400 PF00892 EamA-like transporter family RU84_06405 PF07995 Glucose / Sorbosone dehydrogenase RU84_06435 PF00375 Sodium:dicarboxylate symporter family RU84_06445 PF16123 Hydroxyacylglutathione hydrolase C-terminus RU84_06445 PF00753 Metallo-beta-lactamase superfamily RU84_06450 PF00528 Binding-protein-dependent transport system inner membrane component RU84_06455 PF00005 ABC transporter RU84_06455 PF09383 NIL domain RU84_06460 PF03180 NLPA lipoprotein RU84_06465 PF02844 Phosphoribosylglycinamide synthetase, N domain RU84_06465 PF02843 Phosphoribosylglycinamide synthetase, C domain RU84_06465 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain RU84_06470 PF01808 AICARFT/IMPCHase bienzyme RU84_06470 PF02142 MGS-like domain RU84_06475 PF02954 Bacterial regulatory protein, Fis family RU84_06495 PF01134 Glucose inhibited division protein A RU84_06495 PF13932 GidA associated domain RU84_06505 PF14403 Circularly permuted ATP-grasp type 2 RU84_06515 PF01841 Transglutaminase-like superfamily RU84_06515 PF08379 Bacterial transglutaminase-like N-terminal region RU84_06525 PF01168 Alanine racemase, N-terminal domain RU84_06525 PF00842 Alanine racemase, C-terminal domain RU84_06530 PF00772 DnaB-like helicase N terminal domain RU84_06530 PF03796 DnaB-like helicase C terminal domain RU84_06535 PF03948 Ribosomal protein L9, C-terminal domain RU84_06535 PF01281 Ribosomal protein L9, N-terminal domain RU84_06540 PF01084 Ribosomal protein S18 RU84_06545 PF01250 Ribosomal protein S6 RU84_06550 PF01040 UbiA prenyltransferase family RU84_06555 PF03626 Prokaryotic Cytochrome C oxidase subunit IV RU84_06560 PF00510 Cytochrome c oxidase subunit III RU84_06565 PF00115 Cytochrome C and Quinol oxidase polypeptide I RU84_06570 PF00116 Cytochrome C oxidase subunit II, periplasmic domain RU84_06570 PF06481 COX Aromatic Rich Motif RU84_06580 PF02896 PEP-utilising enzyme, TIM barrel domain RU84_06580 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain RU84_06580 PF00391 PEP-utilising enzyme, mobile domain RU84_06585 PF03618 Kinase/pyrophosphorylase RU84_06595 PF01522 Polysaccharide deacetylase RU84_06595 PF14883 Hypothetical glycosyl hydrolase family 13 RU84_06600 PF00535 Glycosyl transferase family 2 RU84_06605 PF13994 PgaD-like protein RU84_06615 PF00296 Luciferase-like monooxygenase RU84_06630 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RU84_06630 PF03466 LysR substrate binding domain RU84_06640 PF03462 PCRF domain RU84_06640 PF00472 RF-1 domain RU84_06645 PF13847 Methyltransferase domain RU84_06645 PF17827 PrmC N-terminal domain RU84_06650 PF12833 Helix-turn-helix domain RU84_06655 PF00106 short chain dehydrogenase RU84_06660 PF00441 Acyl-CoA dehydrogenase, C-terminal domain RU84_06660 PF02771 Acyl-CoA dehydrogenase, N-terminal domain RU84_06660 PF02770 Acyl-CoA dehydrogenase, middle domain RU84_06665 PF00501 AMP-binding enzyme RU84_06665 PF13193 AMP-binding enzyme C-terminal domain RU84_06670 PF01613 Flavin reductase like domain RU84_06675 PF00899 ThiF family RU84_06680 PF03109 ABC1 family RU84_06695 PF03814 Potassium-transporting ATPase A subunit RU84_06705 PF02669 K+-transporting ATPase, c chain RU84_06710 PF00512 His Kinase A (phospho-acceptor) domain RU84_06710 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RU84_06710 PF02702 Osmosensitive K+ channel His kinase sensor domain RU84_06710 PF13493 Domain of unknown function (DUF4118) RU84_06715 PF00072 Response regulator receiver domain RU84_06715 PF00486 Transcriptional regulatory protein, C terminal RU84_06720 PF00120 Glutamine synthetase, catalytic domain RU84_06730 PF03232 Ubiquinone biosynthesis protein COQ7 RU84_06735 PF07690 Major Facilitator Superfamily RU84_06740 PF01103 Surface antigen RU84_06740 PF17243 POTRA domain TamA domain 1 RU84_06740 PF07244 Surface antigen variable number repeat RU84_06755 PF00330 Aconitase family (aconitate hydratase) RU84_06755 PF06434 Aconitate hydratase 2 N-terminus RU84_06755 PF11791 Aconitate B N-terminal domain RU84_06765 PF00027 Cyclic nucleotide-binding domain RU84_06765 PF00520 Ion transport protein RU84_06770 PF07690 Major Facilitator Superfamily RU84_06785 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RU84_06785 PF03466 LysR substrate binding domain RU84_06790 PF04284 Protein of unknown function (DUF441) RU84_06800 PF00849 RNA pseudouridylate synthase RU84_06800 PF01479 S4 domain RU84_06815 PF01479 S4 domain RU84_06815 PF00849 RNA pseudouridylate synthase RU84_06820 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE RU84_06825 PF01119 DNA mismatch repair protein, C-terminal domain RU84_06825 PF08676 MutL C terminal dimerisation domain RU84_06835 PF17209 Hfq protein RU84_06845 PF00881 Nitroreductase family RU84_06850 PF00149 Calcineurin-like phosphoesterase RU84_06855 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD RU84_06860 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain RU84_06860 PF00749 tRNA synthetases class I (E and Q), catalytic domain RU84_06865 PF00117 Glutamine amidotransferase class-I RU84_06865 PF00958 GMP synthase C terminal domain RU84_06865 PF02540 NAD synthase RU84_06870 PF05985 Ethanolamine ammonia-lyase light chain (EutC) RU84_06875 PF06751 Ethanolamine ammonia lyase large subunit (EutB) RU84_06880 PF13520 Amino acid permease RU84_06885 PF00171 Aldehyde dehydrogenase family RU84_06900 PF00465 Iron-containing alcohol dehydrogenase RU84_06905 PF14493 Helix-turn-helix domain RU84_06905 PF05970 PIF1-like helicase RU84_06915 PF02110 Hydroxyethylthiazole kinase family RU84_06930 PF01433 Peptidase family M1 domain RU84_06930 PF17432 Domain of unknown function (DUF3458_C) ARM repeats RU84_06930 PF11940 Domain of unknown function (DUF3458) Ig-like fold RU84_06945 PF13954 PapC N-terminal domain RU84_06945 PF00577 Outer membrane usher protein RU84_06945 PF13953 PapC C-terminal domain RU84_06970 PF01817 Chorismate mutase type II RU84_06975 PF01037 Lrp/AsnC ligand binding domain RU84_06995 PF00440 Bacterial regulatory proteins, tetR family RU84_07000 PF07715 TonB-dependent Receptor Plug Domain RU84_07000 PF00593 TonB dependent receptor RU84_07005 PF00924 Mechanosensitive ion channel RU84_07035 PF07715 TonB-dependent Receptor Plug Domain RU84_07035 PF00593 TonB dependent receptor RU84_07060 PF12848 ABC transporter RU84_07060 PF00005 ABC transporter RU84_07065 PF00582 Universal stress protein family RU84_07085 PF00690 Cation transporter/ATPase, N-terminus RU84_07085 PF00689 Cation transporting ATPase, C-terminus RU84_07090 PF02308 MgtC family RU84_07095 PF03594 Benzoate membrane transport protein RU84_07100 PF01037 Lrp/AsnC ligand binding domain RU84_07105 PF01810 LysE type translocator RU84_07110 PF13202 EF hand RU84_07110 PF00923 Transaldolase/Fructose-6-phosphate aldolase RU84_07115 PF03466 LysR substrate binding domain RU84_07115 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RU84_07125 PF00108 Thiolase, N-terminal domain RU84_07125 PF02803 Thiolase, C-terminal domain RU84_07150 PF07690 Major Facilitator Superfamily RU84_07165 PF12169 DNA polymerase III subunits gamma and tau domain III RU84_07165 PF12170 DNA polymerase III tau subunit V interacting with alpha RU84_07165 PF12168 DNA polymerase III subunits tau domain IV DnaB-binding RU84_07170 PF04185 Phosphoesterase family RU84_07170 PF05506 Domain of unknown function (DUF756) RU84_07175 PF03061 Thioesterase superfamily RU84_07180 PF00465 Iron-containing alcohol dehydrogenase RU84_07190 PF01451 Low molecular weight phosphotyrosine protein phosphatase RU84_07195 PF01565 FAD binding domain RU84_07195 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain RU84_07220 PF01645 Conserved region in glutamate synthase RU84_07240 PF13936 Helix-turn-helix domain RU84_07240 PF00665 Integrase core domain RU84_07250 PF12832 MFS_1 like family RU84_07260 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain RU84_07260 PF00289 Biotin carboxylase, N-terminal domain RU84_07260 PF02785 Biotin carboxylase C-terminal domain RU84_07265 PF00364 Biotin-requiring enzyme RU84_07270 PF01220 Dehydroquinase class II RU84_07275 PF00817 impB/mucB/samB family RU84_07275 PF13438 Domain of unknown function (DUF4113) RU84_07275 PF11799 impB/mucB/samB family C-terminal domain RU84_07280 PF00005 ABC transporter RU84_07285 PF00486 Transcriptional regulatory protein, C terminal RU84_07285 PF00072 Response regulator receiver domain RU84_07295 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain RU84_07295 PF07992 Pyridine nucleotide-disulphide oxidoreductase RU84_07295 PF18267 Rubredoxin NAD+ reductase C-terminal domain RU84_07295 PF04324 BFD-like [2Fe-2S] binding domain RU84_07295 PF13806 Rieske-like [2Fe-2S] domain RU84_07295 PF01077 Nitrite and sulphite reductase 4Fe-4S domain RU84_07300 PF18267 Rubredoxin NAD+ reductase C-terminal domain RU84_07300 PF07992 Pyridine nucleotide-disulphide oxidoreductase RU84_07300 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain RU84_07300 PF04324 BFD-like [2Fe-2S] binding domain RU84_07300 PF01077 Nitrite and sulphite reductase 4Fe-4S domain RU84_07305 PF01568 Molydopterin dinucleotide binding domain RU84_07305 PF04879 Molybdopterin oxidoreductase Fe4S4 domain RU84_07305 PF04324 BFD-like [2Fe-2S] binding domain RU84_07305 PF00384 Molybdopterin oxidoreductase RU84_07310 PF12804 MobA-like NTP transferase domain RU84_07315 PF04879 Molybdopterin oxidoreductase Fe4S4 domain RU84_07315 PF00384 Molybdopterin oxidoreductase RU84_07315 PF01568 Molydopterin dinucleotide binding domain RU84_07320 PF06463 Molybdenum Cofactor Synthesis C RU84_07320 PF04055 Radical SAM superfamily RU84_07330 PF02391 MoaE protein RU84_07335 PF00994 Probable molybdopterin binding domain RU84_07335 PF01967 MoaC family RU84_07340 PF03454 MoeA C-terminal region (domain IV) RU84_07340 PF00994 Probable molybdopterin binding domain RU84_07340 PF03453 MoeA N-terminal region (domain I and II) RU84_07345 PF01638 HxlR-like helix-turn-helix RU84_07350 PF00392 Bacterial regulatory proteins, gntR family RU84_07350 PF00155 Aminotransferase class I and II RU84_07355 PF00892 EamA-like transporter family RU84_07375 PF02635 DsrE/DsrF-like family RU84_07380 PF16363 GDP-mannose 4,6 dehydratase RU84_07385 PF10415 Fumarase C C-terminus RU84_07385 PF00206 Lyase RU84_07405 PF01266 FAD dependent oxidoreductase RU84_07415 PF02542 YgbB family RU84_07425 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain RU84_07425 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain RU84_07430 PF00440 Bacterial regulatory proteins, tetR family RU84_07435 PF00158 Sigma-54 interaction domain RU84_07435 PF00072 Response regulator receiver domain RU84_07435 PF02954 Bacterial regulatory protein, Fis family RU84_07440 PF00989 PAS fold RU84_07440 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RU84_07440 PF00512 His Kinase A (phospho-acceptor) domain RU84_07445 PF18693 TRAM domain RU84_07445 PF04055 Radical SAM superfamily RU84_07445 PF00919 Uncharacterized protein family UPF0004 RU84_07450 PF00696 Amino acid kinase family RU84_07455 PF01765 Ribosome recycling factor RU84_07460 PF01255 Putative undecaprenyl diphosphate synthase RU84_07470 PF13288 DXP reductoisomerase C-terminal domain RU84_07470 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase RU84_07470 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain RU84_07475 PF13180 PDZ domain RU84_07475 PF17820 PDZ domain RU84_07475 PF02163 Peptidase family M50 RU84_07480 PF01103 Surface antigen RU84_07480 PF07244 Surface antigen variable number repeat RU84_07490 PF00132 Bacterial transferase hexapeptide (six repeats) RU84_07490 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD RU84_07495 PF07977 FabA-like domain RU84_07500 PF00132 Bacterial transferase hexapeptide (six repeats) RU84_07500 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 RU84_07515 PF02631 RecX family RU84_07520 PF00154 recA bacterial DNA recombination protein RU84_07525 PF01479 S4 domain RU84_07530 PF13419 Haloacid dehalogenase-like hydrolase RU84_07555 PF01037 Lrp/AsnC ligand binding domain RU84_07560 PF00266 Aminotransferase class-V RU84_07565 PF00324 Amino acid permease RU84_07575 PF00082 Subtilase family RU84_07575 PF05922 Peptidase inhibitor I9 RU84_07580 PF01740 STAS domain RU84_07580 PF00916 Sulfate permease family RU84_07585 PF02586 SOS response associated peptidase (SRAP) RU84_07590 PF07995 Glucose / Sorbosone dehydrogenase RU84_07600 PF03707 Bacterial signalling protein N terminal repeat RU84_07600 PF00990 Diguanylate cyclase, GGDEF domain RU84_07600 PF00563 EAL domain RU84_07620 PF02378 Phosphotransferase system, EIIC RU84_07620 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit RU84_07625 PF00294 pfkB family carbohydrate kinase RU84_07630 PF00381 PTS HPr component phosphorylation site RU84_07630 PF02896 PEP-utilising enzyme, TIM barrel domain RU84_07630 PF00391 PEP-utilising enzyme, mobile domain RU84_07630 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 RU84_07630 PF05524 PEP-utilising enzyme, N-terminal RU84_07655 PF05525 Branched-chain amino acid transport protein RU84_07660 PF00557 Metallopeptidase family M24 RU84_07665 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RU84_07665 PF03466 LysR substrate binding domain RU84_07675 PF00462 Glutaredoxin RU84_07680 PF00202 Aminotransferase class-III RU84_07685 PF00571 CBS domain RU84_07685 PF00478 IMP dehydrogenase / GMP reductase domain RU84_07710 PF00448 SRP54-type protein, GTPase domain RU84_07710 PF02881 SRP54-type protein, helical bundle domain RU84_07720 PF09829 Uncharacterized protein conserved in bacteria (DUF2057) RU84_07730 PF08173 Membrane bound YbgT-like protein RU84_07735 PF02322 Cytochrome bd terminal oxidase subunit II RU84_07740 PF01654 Cytochrome bd terminal oxidase subunit I RU84_07750 PF07290 Protein of unknown function (DUF1449) RU84_07760 PF00294 pfkB family carbohydrate kinase RU84_07765 PF07715 TonB-dependent Receptor Plug Domain RU84_07765 PF00593 TonB dependent receptor RU84_07770 PF08367 Peptidase M16C associated RU84_07770 PF00675 Insulinase (Peptidase family M16) RU84_07770 PF05193 Peptidase M16 inactive domain RU84_07775 PF02253 Phospholipase A1 RU84_07780 PF02386 Cation transport protein RU84_07785 PF02254 TrkA-N domain RU84_07785 PF02080 TrkA-C domain RU84_07790 PF00585 C-terminal regulatory domain of Threonine dehydratase RU84_07790 PF00291 Pyridoxal-phosphate dependent enzyme RU84_07795 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) RU84_07810 PF02774 Semialdehyde dehydrogenase, dimerisation domain RU84_07810 PF01118 Semialdehyde dehydrogenase, NAD binding domain RU84_07820 PF02617 ATP-dependent Clp protease adaptor protein ClpS RU84_07825 PF07724 AAA domain (Cdc48 subfamily) RU84_07825 PF17871 AAA lid domain RU84_07825 PF10431 C-terminal, D2-small domain, of ClpB protein RU84_07825 PF02861 Clp amino terminal domain, pathogenicity island component RU84_07825 PF00004 ATPase family associated with various cellular activities (AAA) RU84_07830 PF02694 Uncharacterised BCR, YnfA/UPF0060 family RU84_07835 PF00793 DAHP synthetase I family RU84_07850 PF00724 NADH:flavin oxidoreductase / NADH oxidase family RU84_07850 PF07992 Pyridine nucleotide-disulphide oxidoreductase RU84_07880 PF06418 CTP synthase N-terminus RU84_07880 PF00117 Glutamine amidotransferase class-I RU84_07885 PF00793 DAHP synthetase I family RU84_07890 PF00113 Enolase, C-terminal TIM barrel domain RU84_07890 PF03952 Enolase, N-terminal domain RU84_07895 PF04239 Protein of unknown function (DUF421) RU84_07900 PF04977 Septum formation initiator RU84_07905 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase RU84_07910 PF01144 Coenzyme A transferase RU84_07915 PF01144 Coenzyme A transferase RU84_07920 PF00108 Thiolase, N-terminal domain RU84_07920 PF02803 Thiolase, C-terminal domain RU84_07925 PF10397 Adenylosuccinate lyase C-terminus RU84_07925 PF00206 Lyase RU84_07930 PF00561 alpha/beta hydrolase fold RU84_07935 PF07690 Major Facilitator Superfamily RU84_07940 PF02627 Carboxymuconolactone decarboxylase family RU84_07945 PF12391 Protocatechuate 3,4-dioxygenase beta subunit N terminal RU84_07945 PF00775 Dioxygenase RU84_07950 PF00775 Dioxygenase RU84_07955 PF01487 Type I 3-dehydroquinase RU84_07960 PF05048 Periplasmic copper-binding protein (NosD) RU84_07965 PF04966 Carbohydrate-selective porin, OprB family RU84_07970 PF13360 PQQ-like domain RU84_07970 PF01011 PQQ enzyme repeat RU84_07980 PF04143 Sulphur transport RU84_07990 PF00753 Metallo-beta-lactamase superfamily RU84_07995 PF09339 IclR helix-turn-helix domain RU84_07995 PF01614 Bacterial transcriptional regulator RU84_08000 PF03466 LysR substrate binding domain RU84_08000 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RU84_08005 PF02770 Acyl-CoA dehydrogenase, middle domain RU84_08005 PF00441 Acyl-CoA dehydrogenase, C-terminal domain RU84_08005 PF02771 Acyl-CoA dehydrogenase, N-terminal domain RU84_08020 PF00106 short chain dehydrogenase RU84_08030 PF07690 Major Facilitator Superfamily RU84_08040 PF01425 Amidase RU84_08045 PF08028 Acyl-CoA dehydrogenase, C-terminal domain RU84_08060 PF00848 Ring hydroxylating alpha subunit (catalytic domain) RU84_08060 PF00355 Rieske [2Fe-2S] domain RU84_08075 PF00175 Oxidoreductase NAD-binding domain RU84_08075 PF00111 2Fe-2S iron-sulfur cluster binding domain RU84_08080 PF01613 Flavin reductase like domain RU84_08085 PF12833 Helix-turn-helix domain RU84_08085 PF02311 AraC-like ligand binding domain RU84_08090 PF07833 Copper amine oxidase N-terminal domain RU84_08090 PF02727 Copper amine oxidase, N2 domain RU84_08090 PF02728 Copper amine oxidase, N3 domain RU84_08090 PF01179 Copper amine oxidase, enzyme domain RU84_08100 PF00171 Aldehyde dehydrogenase family RU84_08105 PF12146 Serine aminopeptidase, S33 RU84_08110 PF00108 Thiolase, N-terminal domain RU84_08110 PF02803 Thiolase, C-terminal domain RU84_08115 PF01144 Coenzyme A transferase RU84_08120 PF01144 Coenzyme A transferase RU84_08125 PF04444 Catechol dioxygenase N terminus RU84_08125 PF00775 Dioxygenase RU84_08130 PF02426 Muconolactone delta-isomerase RU84_08135 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain RU84_08135 PF13378 Enolase C-terminal domain-like RU84_08140 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RU84_08140 PF03466 LysR substrate binding domain RU84_08150 PF07729 FCD domain RU84_08150 PF00392 Bacterial regulatory proteins, gntR family RU84_08155 PF00920 Dehydratase family RU84_08160 PF07690 Major Facilitator Superfamily RU84_08170 PF00171 Aldehyde dehydrogenase family RU84_08180 PF00561 alpha/beta hydrolase fold RU84_08185 PF07992 Pyridine nucleotide-disulphide oxidoreductase RU84_08185 PF00724 NADH:flavin oxidoreductase / NADH oxidase family RU84_08200 PF13411 MerR HTH family regulatory protein RU84_08210 PF07992 Pyridine nucleotide-disulphide oxidoreductase RU84_08225 PF12706 Beta-lactamase superfamily domain RU84_08230 PF08359 YsiA-like protein, C-terminal region RU84_08230 PF00440 Bacterial regulatory proteins, tetR family RU84_08235 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RU84_08235 PF03466 LysR substrate binding domain RU84_08250 PF00106 short chain dehydrogenase RU84_08255 PF01575 MaoC like domain RU84_08260 PF02771 Acyl-CoA dehydrogenase, N-terminal domain RU84_08260 PF02770 Acyl-CoA dehydrogenase, middle domain RU84_08260 PF00441 Acyl-CoA dehydrogenase, C-terminal domain RU84_08260 PF12806 Acetyl-CoA dehydrogenase C-terminal like RU84_08270 PF00501 AMP-binding enzyme RU84_08270 PF13193 AMP-binding enzyme C-terminal domain RU84_08315 PF13936 Helix-turn-helix domain RU84_08315 PF00665 Integrase core domain RU84_08320 PF13936 Helix-turn-helix domain RU84_08320 PF00665 Integrase core domain RU84_08330 PF04909 Amidohydrolase RU84_08345 PF08450 SMP-30/Gluconolactonase/LRE-like region RU84_08355 PF03466 LysR substrate binding domain RU84_08355 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RU84_08375 PF00529 HlyD membrane-fusion protein of T1SS RU84_08375 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion RU84_08390 PF00171 Aldehyde dehydrogenase family RU84_08395 PF00920 Dehydratase family RU84_08405 PF03466 LysR substrate binding domain RU84_08405 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RU84_08410 PF01370 NAD dependent epimerase/dehydratase family RU84_08415 PF07690 Major Facilitator Superfamily RU84_08420 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase RU84_08420 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase RU84_08425 PF12833 Helix-turn-helix domain RU84_08425 PF06719 AraC-type transcriptional regulator N-terminus RU84_08430 PF08240 Alcohol dehydrogenase GroES-like domain RU84_08430 PF00107 Zinc-binding dehydrogenase RU84_08445 PF00005 ABC transporter RU84_08465 PF14572 Phosphoribosyl synthetase-associated domain RU84_08465 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase RU84_08470 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family RU84_08485 PF13533 Biotin-lipoyl like RU84_08490 PF07690 Major Facilitator Superfamily RU84_08515 PF01975 Survival protein SurE RU84_08525 PF04607 Region found in RelA / SpoT proteins RU84_08525 PF13291 ACT domain RU84_08525 PF02824 TGS domain RU84_08550 PF13673 Acetyltransferase (GNAT) domain RU84_08555 PF12146 Serine aminopeptidase, S33 RU84_08560 PF03466 LysR substrate binding domain RU84_08560 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RU84_08575 PF12146 Serine aminopeptidase, S33 RU84_08580 PF02311 AraC-like ligand binding domain RU84_08580 PF12833 Helix-turn-helix domain RU84_08590 PF00672 HAMP domain RU84_08590 PF00512 His Kinase A (phospho-acceptor) domain RU84_08590 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RU84_08590 PF16527 Two-component sensor protein CpxA, periplasmic domain RU84_08595 PF00486 Transcriptional regulatory protein, C terminal RU84_08595 PF00072 Response regulator receiver domain RU84_08600 PF00529 HlyD membrane-fusion protein of T1SS RU84_08600 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion RU84_08605 PF00873 AcrB/AcrD/AcrF family RU84_08610 PF00005 ABC transporter RU84_08610 PF17760 UvrA interaction domain RU84_08610 PF17755 UvrA DNA-binding domain RU84_08620 PF03466 LysR substrate binding domain RU84_08620 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RU84_08625 PF01144 Coenzyme A transferase RU84_08630 PF01144 Coenzyme A transferase RU84_08635 PF02667 Short chain fatty acid transporter RU84_08640 PF02803 Thiolase, C-terminal domain RU84_08640 PF00108 Thiolase, N-terminal domain RU84_08645 PF03466 LysR substrate binding domain RU84_08645 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RU84_08650 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RU84_08650 PF03466 LysR substrate binding domain RU84_08665 PF10415 Fumarase C C-terminus RU84_08665 PF00206 Lyase RU84_08670 PF00593 TonB dependent receptor RU84_08670 PF07715 TonB-dependent Receptor Plug Domain RU84_08675 PF00083 Sugar (and other) transporter RU84_08690 PF00005 ABC transporter RU84_08695 PF00528 Binding-protein-dependent transport system inner membrane component RU84_08700 PF04069 Substrate binding domain of ABC-type glycine betaine transport system RU84_08720 PF02417 Chromate transporter RU84_08725 PF02525 Flavodoxin-like fold RU84_08730 PF01638 HxlR-like helix-turn-helix RU84_08735 PF12833 Helix-turn-helix domain RU84_08735 PF06445 GyrI-like small molecule binding domain RU84_08750 PF01925 Sulfite exporter TauE/SafE RU84_08755 PF00753 Metallo-beta-lactamase superfamily RU84_08755 PF04273 Putative phosphatase (DUF442) RU84_08760 PF00753 Metallo-beta-lactamase superfamily RU84_08765 PF00158 Sigma-54 interaction domain RU84_08765 PF00072 Response regulator receiver domain RU84_08765 PF02954 Bacterial regulatory protein, Fis family RU84_08770 PF01062 Bestrophin, RFP-TM, chloride channel RU84_08775 PF00107 Zinc-binding dehydrogenase RU84_08775 PF08240 Alcohol dehydrogenase GroES-like domain RU84_08780 PF00106 short chain dehydrogenase RU84_08785 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain RU84_08785 PF07992 Pyridine nucleotide-disulphide oxidoreductase RU84_08790 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) RU84_08790 PF02817 e3 binding domain RU84_08790 PF00364 Biotin-requiring enzyme RU84_08795 PF02780 Transketolase, C-terminal domain RU84_08795 PF02779 Transketolase, pyrimidine binding domain RU84_08800 PF00676 Dehydrogenase E1 component RU84_08805 PF04055 Radical SAM superfamily RU84_08820 PF08448 PAS fold RU84_08820 PF00990 Diguanylate cyclase, GGDEF domain RU84_08825 PF01264 Chorismate synthase RU84_08830 PF05175 Methyltransferase small domain RU84_08835 PF00291 Pyridoxal-phosphate dependent enzyme RU84_08850 PF02132 RecR protein RU84_08850 PF13662 Toprim domain RU84_08855 PF02575 YbaB/EbfC DNA-binding family RU84_08865 PF01053 Cys/Met metabolism PLP-dependent enzyme RU84_08870 PF00561 alpha/beta hydrolase fold RU84_08875 PF08241 Methyltransferase domain RU84_08905 PF01230 HIT domain RU84_08940 PF00005 ABC transporter RU84_08945 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion RU84_08955 PF02684 Lipid-A-disaccharide synthetase RU84_08960 PF07715 TonB-dependent Receptor Plug Domain RU84_08960 PF00593 TonB dependent receptor RU84_08980 PF01925 Sulfite exporter TauE/SafE RU84_08985 PF00793 DAHP synthetase I family RU84_08990 PF02654 Cobalamin-5-phosphate synthase RU84_09000 PF00300 Histidine phosphatase superfamily (branch 1) RU84_09005 PF02277 Phosphoribosyltransferase RU84_09010 PF02283 Cobinamide kinase / cobinamide phosphate guanyltransferase RU84_09020 PF13419 Haloacid dehalogenase-like hydrolase RU84_09045 PF00593 TonB dependent receptor RU84_09045 PF07715 TonB-dependent Receptor Plug Domain RU84_09050 PF03737 Aldolase/RraA RU84_09060 PF04183 IucA / IucC family RU84_09060 PF06276 Ferric iron reductase FhuF-like transporter RU84_09065 PF06276 Ferric iron reductase FhuF-like transporter RU84_09065 PF04183 IucA / IucC family RU84_09070 PF07690 Major Facilitator Superfamily RU84_09075 PF13434 L-lysine 6-monooxygenase (NADPH-requiring) RU84_09080 PF04183 IucA / IucC family RU84_09080 PF06276 Ferric iron reductase FhuF-like transporter RU84_09085 PF04073 Aminoacyl-tRNA editing domain RU84_09095 PF03109 ABC1 family RU84_09100 PF00441 Acyl-CoA dehydrogenase, C-terminal domain RU84_09100 PF02770 Acyl-CoA dehydrogenase, middle domain RU84_09100 PF02771 Acyl-CoA dehydrogenase, N-terminal domain RU84_09105 PF02771 Acyl-CoA dehydrogenase, N-terminal domain RU84_09105 PF02770 Acyl-CoA dehydrogenase, middle domain RU84_09105 PF00441 Acyl-CoA dehydrogenase, C-terminal domain RU84_09110 PF00487 Fatty acid desaturase RU84_09115 PF12833 Helix-turn-helix domain RU84_09115 PF12852 Cupin RU84_09120 PF09312 SurA N-terminal domain RU84_09120 PF00639 PPIC-type PPIASE domain RU84_09125 PF00216 Bacterial DNA-binding protein RU84_09140 PF02082 Transcriptional regulator RU84_09145 PF00266 Aminotransferase class-V RU84_09150 PF01592 NifU-like N terminal domain RU84_09155 PF01521 Iron-sulphur cluster biosynthesis RU84_09160 PF07743 HSCB C-terminal oligomerisation domain RU84_09160 PF00226 DnaJ domain RU84_09165 PF00012 Hsp70 protein RU84_09170 PF00111 2Fe-2S iron-sulfur cluster binding domain RU84_09175 PF00211 Adenylate and Guanylate cyclase catalytic domain RU84_09185 PF17757 UvrB interaction domain RU84_09185 PF03461 TRCF domain RU84_09185 PF00270 DEAD/DEAH box helicase RU84_09185 PF02559 CarD-like/TRCF domain RU84_09185 PF00271 Helicase conserved C-terminal domain RU84_09205 PF03737 Aldolase/RraA RU84_09210 PF13460 NAD(P)H-binding RU84_09215 PF01649 Ribosomal protein S20 RU84_09225 PF00459 Inositol monophosphatase family RU84_09240 PF00005 ABC transporter RU84_09240 PF08352 Oligopeptide/dipeptide transporter, C-terminal region RU84_09245 PF00528 Binding-protein-dependent transport system inner membrane component RU84_09250 PF00528 Binding-protein-dependent transport system inner membrane component RU84_09255 PF01432 Peptidase family M3 RU84_09270 PF07715 TonB-dependent Receptor Plug Domain RU84_09270 PF00593 TonB dependent receptor RU84_09280 PF01618 MotA/TolQ/ExbB proton channel family RU84_09285 PF02472 Biopolymer transport protein ExbD/TolR RU84_09290 PF02472 Biopolymer transport protein ExbD/TolR RU84_09295 PF01274 Malate synthase RU84_09300 PF03969 AFG1-like ATPase RU84_09310 PF00743 Flavin-binding monooxygenase-like RU84_09320 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family RU84_09330 PF00216 Bacterial DNA-binding protein RU84_09335 PF00575 S1 RNA binding domain RU84_09340 PF02224 Cytidylate kinase RU84_09350 PF14437 MafB19-like deaminase RU84_09360 PF03167 Uracil DNA glycosylase superfamily RU84_09370 PF03934 Type II secretion system (T2SS), protein K RU84_09375 PF07963 Prokaryotic N-terminal methylation motif RU84_09375 PF11612 Type II secretion system (T2SS), protein J RU84_09380 PF07963 Prokaryotic N-terminal methylation motif RU84_09380 PF02501 Type II secretion system (T2SS), protein I RU84_09395 PF01026 TatD related DNase RU84_09405 PF09115 DNA polymerase III, delta subunit, C terminal RU84_09410 PF02348 Cytidylyltransferase RU84_09415 PF02606 Tetraacyldisaccharide-1-P 4'-kinase RU84_09420 PF00005 ABC transporter RU84_09420 PF00664 ABC transporter transmembrane region RU84_09430 PF01618 MotA/TolQ/ExbB proton channel family RU84_09435 PF17762 HTH domain found in ParB protein RU84_09435 PF02195 ParB-like nuclease domain RU84_09440 PF13614 AAA domain RU84_09445 PF02527 rRNA small subunit methyltransferase G RU84_09450 PF00483 Nucleotidyl transferase RU84_09455 PF01636 Phosphotransferase enzyme family RU84_09460 PF03968 OstA-like protein RU84_09460 PF04453 LPS transport system D RU84_09465 PF00639 PPIC-type PPIASE domain RU84_09465 PF09312 SurA N-terminal domain RU84_09470 PF01116 Fructose-bisphosphate aldolase class-II RU84_09480 PF00162 Phosphoglycerate kinase RU84_09490 PF02545 Maf-like protein RU84_09495 PF08007 Cupin superfamily protein RU84_09510 PF00375 Sodium:dicarboxylate symporter family RU84_09515 PF06912 Protein of unknown function (DUF1275) RU84_09520 PF09831 Uncharacterized protein conserved in bacteria (DUF2058) RU84_09525 PF00005 ABC transporter RU84_09525 PF00664 ABC transporter transmembrane region RU84_09535 PF12833 Helix-turn-helix domain RU84_09535 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term RU84_09540 PF01597 Glycine cleavage H-protein RU84_09545 PF02146 Sir2 family RU84_09550 PF00474 Sodium:solute symporter family RU84_09555 PF01037 Lrp/AsnC ligand binding domain RU84_09560 PF01619 Proline dehydrogenase RU84_09560 PF18327 Proline utilization A proline dehydrogenase N-terminal domain RU84_09560 PF00171 Aldehyde dehydrogenase family RU84_09560 PF14850 DNA-binding domain of Proline dehydrogenase RU84_09565 PF04229 GrpB protein RU84_09570 PF05958 tRNA (Uracil-5-)-methyltransferase RU84_09580 PF09992 Phosphodiester glycosidase RU84_09590 PF04264 YceI-like domain RU84_09600 PF00456 Transketolase, thiamine diphosphate binding domain RU84_09600 PF02780 Transketolase, C-terminal domain RU84_09600 PF02779 Transketolase, pyrimidine binding domain RU84_09605 PF02772 S-adenosylmethionine synthetase, central domain RU84_09605 PF02773 S-adenosylmethionine synthetase, C-terminal domain RU84_09605 PF00438 S-adenosylmethionine synthetase, N-terminal domain RU84_09625 PF00905 Penicillin binding protein transpeptidase domain RU84_09640 PF02075 Crossover junction endodeoxyribonuclease RuvC RU84_09645 PF01256 Carbohydrate kinase RU84_09645 PF03853 YjeF-related protein N-terminus RU84_09650 PF08331 Domain of unknown function (DUF1730) RU84_09655 PF06968 Biotin and Thiamin Synthesis associated domain RU84_09655 PF04055 Radical SAM superfamily RU84_09670 PF16970 Type-1 fimbrial protein, A RU84_09675 PF02753 Pili assembly chaperone PapD, C-terminal domain RU84_09675 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain RU84_09680 PF13953 PapC C-terminal domain RU84_09680 PF13954 PapC N-terminal domain RU84_09680 PF00577 Outer membrane usher protein RU84_09700 PF00892 EamA-like transporter family RU84_09710 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin RU84_09720 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RU84_09720 PF03466 LysR substrate binding domain RU84_09755 PF01709 Transcriptional regulator RU84_09760 PF01037 Lrp/AsnC ligand binding domain RU84_09770 PF00005 ABC transporter RU84_09775 PF00528 Binding-protein-dependent transport system inner membrane component RU84_09780 PF00528 Binding-protein-dependent transport system inner membrane component RU84_09795 PF02771 Acyl-CoA dehydrogenase, N-terminal domain RU84_09795 PF08028 Acyl-CoA dehydrogenase, C-terminal domain RU84_09805 PF00296 Luciferase-like monooxygenase RU84_09810 PF03180 NLPA lipoprotein RU84_09815 PF03180 NLPA lipoprotein RU84_09820 PF09383 NIL domain RU84_09820 PF00005 ABC transporter RU84_09825 PF00528 Binding-protein-dependent transport system inner membrane component RU84_09830 PF06071 Protein of unknown function (DUF933) RU84_09830 PF01926 50S ribosome-binding GTPase RU84_09855 PF03591 AzlC protein RU84_09860 PF05437 Branched-chain amino acid transport protein (AzlD) RU84_09870 PF02222 ATP-grasp domain RU84_09875 PF01966 HD domain RU84_09875 PF08335 GlnD PII-uridylyltransferase RU84_09875 PF01909 Nucleotidyltransferase domain RU84_09895 PF12852 Cupin RU84_09895 PF12833 Helix-turn-helix domain RU84_09900 PF00255 Glutathione peroxidase RU84_09905 PF01641 SelR domain RU84_09910 PF00155 Aminotransferase class I and II RU84_09915 PF00375 Sodium:dicarboxylate symporter family RU84_09920 PF17763 Glutaminase/Asparaginase C-terminal domain RU84_09920 PF00710 Asparaginase, N-terminal RU84_09925 PF14579 Helix-hairpin-helix motif RU84_09925 PF02811 PHP domain RU84_09925 PF01336 OB-fold nucleic acid binding domain RU84_09925 PF17657 Bacterial DNA polymerase III alpha subunit finger domain RU84_09925 PF07733 Bacterial DNA polymerase III alpha NTPase domain RU84_09930 PF00588 SpoU rRNA Methylase family RU84_09935 PF00132 Bacterial transferase hexapeptide (six repeats) RU84_09950 PF07992 Pyridine nucleotide-disulphide oxidoreductase RU84_09950 PF13192 Thioredoxin domain RU84_09965 PF03466 LysR substrate binding domain RU84_09965 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RU84_09970 PF01758 Sodium Bile acid symporter family RU84_09975 PF01022 Bacterial regulatory protein, arsR family RU84_09980 PF03960 ArsC family RU84_09990 PF01979 Amidohydrolase family RU84_09990 PF13382 Adenine deaminase C-terminal domain RU84_10000 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RU84_10000 PF03466 LysR substrate binding domain RU84_10010 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin RU84_10015 PF01177 Asp/Glu/Hydantoin racemase RU84_10020 PF02668 Taurine catabolism dioxygenase TauD, TfdA family RU84_10025 PF00528 Binding-protein-dependent transport system inner membrane component RU84_10030 PF00005 ABC transporter RU84_10035 PF04069 Substrate binding domain of ABC-type glycine betaine transport system RU84_10045 PF00083 Sugar (and other) transporter RU84_10050 PF00296 Luciferase-like monooxygenase RU84_10065 PF01654 Cytochrome bd terminal oxidase subunit I RU84_10070 PF02322 Cytochrome bd terminal oxidase subunit II RU84_10080 PF00155 Aminotransferase class I and II RU84_10080 PF00392 Bacterial regulatory proteins, gntR family RU84_10085 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RU84_10085 PF03466 LysR substrate binding domain RU84_10100 PF00698 Acyl transferase domain RU84_10105 PF10620 Phosphoribosyl-dephospho-CoA transferase MdcG RU84_10115 PF01039 Carboxyl transferase domain RU84_10120 PF06857 Malonate decarboxylase delta subunit (MdcD) RU84_10125 PF01874 ATP:dephospho-CoA triphosphoribosyl transferase RU84_10130 PF16957 Malonate decarboxylase, alpha subunit, transporter RU84_10135 PF03466 LysR substrate binding domain RU84_10135 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RU84_10145 PF07690 Major Facilitator Superfamily RU84_10160 PF00155 Aminotransferase class I and II RU84_10160 PF00392 Bacterial regulatory proteins, gntR family RU84_10165 PF04172 LrgB-like family RU84_10170 PF03788 LrgA family RU84_10175 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RU84_10175 PF03466 LysR substrate binding domain RU84_10180 PF02798 Glutathione S-transferase, N-terminal domain RU84_10180 PF14834 Glutathione S-transferase, C-terminal domain RU84_10185 PF02798 Glutathione S-transferase, N-terminal domain RU84_10190 PF03466 LysR substrate binding domain RU84_10190 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RU84_10200 PF00665 Integrase core domain RU84_10200 PF13936 Helix-turn-helix domain RU84_10205 PF00581 Rhodanese-like domain RU84_10210 PF00132 Bacterial transferase hexapeptide (six repeats) RU84_10220 PF00266 Aminotransferase class-V RU84_10225 PF01810 LysE type translocator RU84_10230 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RU84_10230 PF03466 LysR substrate binding domain RU84_10235 PF00497 Bacterial extracellular solute-binding proteins, family 3 RU84_10240 PF00497 Bacterial extracellular solute-binding proteins, family 3 RU84_10245 PF00005 ABC transporter RU84_10250 PF00528 Binding-protein-dependent transport system inner membrane component RU84_10255 PF00528 Binding-protein-dependent transport system inner membrane component RU84_10265 PF00072 Response regulator receiver domain RU84_10270 PF00072 Response regulator receiver domain RU84_10270 PF00512 His Kinase A (phospho-acceptor) domain RU84_10270 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RU84_10270 PF09308 LuxQ, periplasmic RU84_10280 PF13404 AsnC-type helix-turn-helix domain RU84_10280 PF01037 Lrp/AsnC ligand binding domain RU84_10290 PF00717 Peptidase S24-like RU84_10305 PF13936 Helix-turn-helix domain RU84_10305 PF00665 Integrase core domain RU84_10320 PF06628 Catalase-related immune-responsive RU84_10320 PF00199 Catalase RU84_10320 PF18011 C-terminal domain found in long catalases RU84_10330 PF02464 Competence-damaged protein RU84_10330 PF18146 Damage-inducible protein CinA KH domain RU84_10330 PF00994 Probable molybdopterin binding domain RU84_10365 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RU84_10365 PF03466 LysR substrate binding domain RU84_10385 PF13193 AMP-binding enzyme C-terminal domain RU84_10385 PF00501 AMP-binding enzyme RU84_10390 PF00440 Bacterial regulatory proteins, tetR family RU84_10395 PF00441 Acyl-CoA dehydrogenase, C-terminal domain RU84_10395 PF02770 Acyl-CoA dehydrogenase, middle domain RU84_10395 PF02771 Acyl-CoA dehydrogenase, N-terminal domain RU84_10400 PF01039 Carboxyl transferase domain RU84_10405 PF00378 Enoyl-CoA hydratase/isomerase RU84_10410 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain RU84_10410 PF02785 Biotin carboxylase C-terminal domain RU84_10410 PF00289 Biotin carboxylase, N-terminal domain RU84_10410 PF00364 Biotin-requiring enzyme RU84_10415 PF00682 HMGL-like RU84_10420 PF03466 LysR substrate binding domain RU84_10420 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RU84_10435 PF12806 Acetyl-CoA dehydrogenase C-terminal like RU84_10435 PF02771 Acyl-CoA dehydrogenase, N-terminal domain RU84_10435 PF02770 Acyl-CoA dehydrogenase, middle domain RU84_10435 PF00441 Acyl-CoA dehydrogenase, C-terminal domain RU84_10445 PF07690 Major Facilitator Superfamily RU84_10455 PF01144 Coenzyme A transferase RU84_10460 PF01144 Coenzyme A transferase RU84_10465 PF07690 Major Facilitator Superfamily RU84_10470 PF02771 Acyl-CoA dehydrogenase, N-terminal domain RU84_10470 PF02770 Acyl-CoA dehydrogenase, middle domain RU84_10470 PF00441 Acyl-CoA dehydrogenase, C-terminal domain RU84_10475 PF00378 Enoyl-CoA hydratase/isomerase RU84_10485 PF18321 3-hydroxybutyryl-CoA dehydrogenase reduced Rossmann-fold domain RU84_10485 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain RU84_10485 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain RU84_10490 PF00108 Thiolase, N-terminal domain RU84_10490 PF02803 Thiolase, C-terminal domain RU84_10495 PF09339 IclR helix-turn-helix domain RU84_10500 PF07690 Major Facilitator Superfamily RU84_10505 PF03060 Nitronate monooxygenase RU84_10510 PF00378 Enoyl-CoA hydratase/isomerase RU84_10515 PF09339 IclR helix-turn-helix domain RU84_10520 PF02515 CoA-transferase family III RU84_10525 PF02770 Acyl-CoA dehydrogenase, middle domain RU84_10525 PF02771 Acyl-CoA dehydrogenase, N-terminal domain RU84_10525 PF00441 Acyl-CoA dehydrogenase, C-terminal domain RU84_10530 PF07690 Major Facilitator Superfamily RU84_10535 PF13419 Haloacid dehalogenase-like hydrolase RU84_10545 PF01266 FAD dependent oxidoreductase RU84_10550 PF00528 Binding-protein-dependent transport system inner membrane component RU84_10555 PF08402 TOBE domain RU84_10555 PF00005 ABC transporter RU84_10565 PF07702 UTRA domain RU84_10565 PF00392 Bacterial regulatory proteins, gntR family RU84_10575 PF00842 Alanine racemase, C-terminal domain RU84_10575 PF01168 Alanine racemase, N-terminal domain RU84_10580 PF01494 FAD binding domain RU84_10585 PF09339 IclR helix-turn-helix domain RU84_10585 PF01614 Bacterial transcriptional regulator RU84_10590 PF02525 Flavodoxin-like fold RU84_10595 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RU84_10595 PF03466 LysR substrate binding domain RU84_10600 PF02627 Carboxymuconolactone decarboxylase family RU84_10605 PF00171 Aldehyde dehydrogenase family RU84_10615 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin RU84_10620 PF00171 Aldehyde dehydrogenase family RU84_10625 PF00296 Luciferase-like monooxygenase RU84_10630 PF01613 Flavin reductase like domain RU84_10635 PF12697 Alpha/beta hydrolase family RU84_10655 PF01292 Prokaryotic cytochrome b561 RU84_10660 PF00199 Catalase RU84_10665 PF07690 Major Facilitator Superfamily RU84_10670 PF00682 HMGL-like RU84_10675 PF02515 CoA-transferase family III RU84_10705 PF03061 Thioesterase superfamily RU84_10710 PF00132 Bacterial transferase hexapeptide (six repeats) RU84_10715 PF08223 PaaX-like protein C-terminal domain RU84_10715 PF07848 PaaX-like protein RU84_10720 PF00501 AMP-binding enzyme RU84_10720 PF14535 AMP-binding enzyme C-terminal domain RU84_10725 PF02803 Thiolase, C-terminal domain RU84_10725 PF00108 Thiolase, N-terminal domain RU84_10730 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain RU84_10730 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain RU84_10730 PF18321 3-hydroxybutyryl-CoA dehydrogenase reduced Rossmann-fold domain RU84_10735 PF00378 Enoyl-CoA hydratase/isomerase RU84_10740 PF00378 Enoyl-CoA hydratase/isomerase RU84_10745 PF00175 Oxidoreductase NAD-binding domain RU84_10745 PF00970 Oxidoreductase FAD-binding domain RU84_10745 PF00111 2Fe-2S iron-sulfur cluster binding domain RU84_10750 PF01883 Iron-sulfur cluster assembly protein RU84_10755 PF05138 Phenylacetic acid catabolic protein RU84_10760 PF06243 Phenylacetic acid degradation B RU84_10765 PF05138 Phenylacetic acid catabolic protein RU84_10770 PF01575 MaoC like domain RU84_10770 PF00171 Aldehyde dehydrogenase family RU84_10775 PF03315 Serine dehydratase beta chain RU84_10775 PF03313 Serine dehydratase alpha chain RU84_10780 PF13520 Amino acid permease RU84_10785 PF00171 Aldehyde dehydrogenase family RU84_10790 PF00083 Sugar (and other) transporter RU84_10800 PF07992 Pyridine nucleotide-disulphide oxidoreductase RU84_10800 PF04324 BFD-like [2Fe-2S] binding domain RU84_10810 PF01266 FAD dependent oxidoreductase RU84_10815 PF05544 Proline racemase RU84_10820 PF00392 Bacterial regulatory proteins, gntR family RU84_10830 PF00701 Dihydrodipicolinate synthetase family RU84_10840 PF09278 MerR, DNA binding RU84_10840 PF00376 MerR family regulatory protein RU84_10855 PF00665 Integrase core domain RU84_10855 PF13936 Helix-turn-helix domain RU84_10870 PF00654 Voltage gated chloride channel RU84_10875 PF00289 Biotin carboxylase, N-terminal domain RU84_10875 PF00364 Biotin-requiring enzyme RU84_10875 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain RU84_10875 PF02785 Biotin carboxylase C-terminal domain RU84_10885 PF07286 Protein of unknown function (DUF1445) RU84_10890 PF03746 LamB/YcsF family RU84_10895 PF01566 Natural resistance-associated macrophage protein RU84_10900 PF03466 LysR substrate binding domain RU84_10900 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RU84_10940 PF03527 RHS protein RU84_10940 PF05593 RHS Repeat RU84_10945 PF04717 Type VI secretion system, phage-baseplate injector RU84_10945 PF16671 Actin cross-linking domain RU84_10970 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain RU84_10970 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain RU84_10990 PF07690 Major Facilitator Superfamily RU84_11005 PF01544 CorA-like Mg2+ transporter protein RU84_11010 PF03279 Bacterial lipid A biosynthesis acyltransferase RU84_11015 PF00563 EAL domain RU84_11015 PF00990 Diguanylate cyclase, GGDEF domain RU84_11015 PF00360 Phytochrome region RU84_11015 PF01590 GAF domain RU84_11020 PF00892 EamA-like transporter family RU84_11025 PF01037 Lrp/AsnC ligand binding domain RU84_11030 PF05190 MutS family domain IV RU84_11030 PF05188 MutS domain II RU84_11030 PF00488 MutS domain V RU84_11030 PF05192 MutS domain III RU84_11030 PF01624 MutS domain I RU84_11040 PF11953 Domain of unknown function (DUF3470) RU84_11040 PF00037 4Fe-4S binding domain RU84_11050 PF01596 O-methyltransferase RU84_11060 PF00132 Bacterial transferase hexapeptide (six repeats) RU84_11065 PF01205 Uncharacterized protein family UPF0029 RU84_11075 PF00664 ABC transporter transmembrane region RU84_11075 PF03412 Peptidase C39 family RU84_11075 PF00005 ABC transporter RU84_11080 PF02321 Outer membrane efflux protein RU84_11085 PF12399 Branched-chain amino acid ATP-binding cassette transporter RU84_11085 PF00005 ABC transporter RU84_11090 PF03968 OstA-like protein RU84_11105 PF00571 CBS domain RU84_11105 PF01380 SIS domain RU84_11110 PF09190 DALR domain RU84_11110 PF01406 tRNA synthetases class I (C) catalytic domain RU84_11145 PF01638 HxlR-like helix-turn-helix RU84_11150 PF07690 Major Facilitator Superfamily RU84_11170 PF14748 Pyrroline-5-carboxylate reductase dimerisation RU84_11170 PF03807 NADP oxidoreductase coenzyme F420-dependent RU84_11180 PF00313 'Cold-shock' DNA-binding domain RU84_11185 PF01810 LysE type translocator RU84_11215 PF02601 Exonuclease VII, large subunit RU84_11215 PF13742 OB-fold nucleic acid binding domain RU84_11250 PF00376 MerR family regulatory protein RU84_11250 PF09278 MerR, DNA binding RU84_11255 PF00403 Heavy-metal-associated domain RU84_11260 PF00403 Heavy-metal-associated domain RU84_11265 PF06505 Activator of aromatic catabolism RU84_11265 PF00158 Sigma-54 interaction domain RU84_11265 PF02830 V4R domain RU84_11265 PF02954 Bacterial regulatory protein, Fis family RU84_11270 PF06099 Phenol hydroxylase subunit RU84_11275 PF02332 Methane/Phenol/Toluene Hydroxylase RU84_11280 PF02406 MmoB/DmpM family RU84_11285 PF04945 YHS domain RU84_11285 PF02332 Methane/Phenol/Toluene Hydroxylase RU84_11295 PF00111 2Fe-2S iron-sulfur cluster binding domain RU84_11295 PF00970 Oxidoreductase FAD-binding domain RU84_11295 PF00175 Oxidoreductase NAD-binding domain RU84_11305 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RU84_11305 PF03466 LysR substrate binding domain RU84_11310 PF00355 Rieske [2Fe-2S] domain RU84_11310 PF00848 Ring hydroxylating alpha subunit (catalytic domain) RU84_11315 PF00866 Ring hydroxylating beta subunit RU84_11320 PF00111 2Fe-2S iron-sulfur cluster binding domain RU84_11320 PF00970 Oxidoreductase FAD-binding domain RU84_11320 PF00175 Oxidoreductase NAD-binding domain RU84_11325 PF00106 short chain dehydrogenase RU84_11330 PF03594 Benzoate membrane transport protein RU84_11335 PF07690 Major Facilitator Superfamily RU84_11345 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III RU84_11345 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal RU84_11350 PF00270 DEAD/DEAH box helicase RU84_11350 PF11898 Domain of unknown function (DUF3418) RU84_11350 PF04408 Helicase associated domain (HA2) RU84_11350 PF00271 Helicase conserved C-terminal domain RU84_11350 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold RU84_11355 PF00578 AhpC/TSA family RU84_11355 PF10417 C-terminal domain of 1-Cys peroxiredoxin RU84_11375 PF13192 Thioredoxin domain RU84_11375 PF07992 Pyridine nucleotide-disulphide oxidoreductase RU84_11385 PF02798 Glutathione S-transferase, N-terminal domain RU84_11385 PF00043 Glutathione S-transferase, C-terminal domain RU84_11395 PF02390 Putative methyltransferase RU84_11400 PF00043 Glutathione S-transferase, C-terminal domain RU84_11400 PF13417 Glutathione S-transferase, N-terminal domain RU84_11410 PF13488 Glycine zipper RU84_11410 PF00691 OmpA family RU84_11415 PF01979 Amidohydrolase family RU84_11420 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain RU84_11420 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain RU84_11430 PF01170 Putative RNA methylase family UPF0020 RU84_11430 PF10672 S-adenosylmethionine-dependent methyltransferase RU84_11430 PF02926 THUMP domain RU84_11445 PF10431 C-terminal, D2-small domain, of ClpB protein RU84_11445 PF17871 AAA lid domain RU84_11445 PF00004 ATPase family associated with various cellular activities (AAA) RU84_11445 PF07724 AAA domain (Cdc48 subfamily) RU84_11445 PF02861 Clp amino terminal domain, pathogenicity island component RU84_11465 PF02566 OsmC-like protein RU84_11470 PF13545 Crp-like helix-turn-helix domain RU84_11470 PF00027 Cyclic nucleotide-binding domain RU84_11475 PF00248 Aldo/keto reductase family RU84_11490 PF00709 Adenylosuccinate synthetase RU84_11495 PF13393 Histidyl-tRNA synthetase RU84_11505 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain RU84_11505 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain RU84_11510 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain RU84_11510 PF02272 DHHA1 domain RU84_11510 PF01411 tRNA synthetases class II (A) RU84_11515 PF00696 Amino acid kinase family RU84_11515 PF01842 ACT domain RU84_11515 PF13840 ACT domain RU84_11520 PF02599 Global regulator protein family RU84_11525 PF01351 Ribonuclease HII RU84_11535 PF01292 Prokaryotic cytochrome b561 RU84_11540 PF00962 Adenosine/AMP deaminase RU84_11545 PF00860 Permease family RU84_11555 PF00743 Flavin-binding monooxygenase-like RU84_11560 PF00106 short chain dehydrogenase RU84_11570 PF02678 Pirin RU84_11570 PF17954 Quercetinase C-terminal cupin domain RU84_11575 PF17932 Tetracyclin repressor-like, C-terminal domain RU84_11575 PF00440 Bacterial regulatory proteins, tetR family RU84_11585 PF00106 short chain dehydrogenase RU84_11595 PF04072 Leucine carboxyl methyltransferase RU84_11600 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term RU84_11600 PF12833 Helix-turn-helix domain RU84_11605 PF00743 Flavin-binding monooxygenase-like RU84_11610 PF00106 short chain dehydrogenase RU84_11615 PF07859 alpha/beta hydrolase fold RU84_11620 PF05199 GMC oxidoreductase RU84_11625 PF03573 outer membrane porin, OprD family RU84_11630 PF07690 Major Facilitator Superfamily RU84_11635 PF00884 Sulfatase RU84_11640 PF03781 Sulfatase-modifying factor enzyme 1 RU84_11650 PF00355 Rieske [2Fe-2S] domain RU84_11655 PF00111 2Fe-2S iron-sulfur cluster binding domain RU84_11655 PF00175 Oxidoreductase NAD-binding domain RU84_11670 PF07690 Major Facilitator Superfamily RU84_11675 PF00378 Enoyl-CoA hydratase/isomerase RU84_11680 PF00171 Aldehyde dehydrogenase family RU84_11690 PF02770 Acyl-CoA dehydrogenase, middle domain RU84_11690 PF00441 Acyl-CoA dehydrogenase, C-terminal domain RU84_11690 PF02771 Acyl-CoA dehydrogenase, N-terminal domain RU84_11695 PF03573 outer membrane porin, OprD family RU84_11710 PF07519 Tannase and feruloyl esterase RU84_11715 PF00392 Bacterial regulatory proteins, gntR family RU84_11715 PF07729 FCD domain RU84_11720 PF00171 Aldehyde dehydrogenase family RU84_11725 PF00701 Dihydrodipicolinate synthetase family RU84_11730 PF13378 Enolase C-terminal domain-like RU84_11735 PF07690 Major Facilitator Superfamily RU84_11745 PF00892 EamA-like transporter family RU84_11750 PF12833 Helix-turn-helix domain RU84_11750 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term RU84_11755 PF00171 Aldehyde dehydrogenase family RU84_11785 PF00324 Amino acid permease RU84_11790 PF04958 Arginine N-succinyltransferase beta subunit RU84_11795 PF00202 Aminotransferase class-III RU84_11805 PF00171 Aldehyde dehydrogenase family RU84_11815 PF07729 FCD domain RU84_11815 PF00392 Bacterial regulatory proteins, gntR family RU84_11825 PF00324 Amino acid permease RU84_11830 PF01266 FAD dependent oxidoreductase RU84_11835 PF00324 Amino acid permease RU84_11870 PF05593 RHS Repeat RU84_11870 PF03527 RHS protein RU84_11875 PF16671 Actin cross-linking domain RU84_11875 PF04717 Type VI secretion system, phage-baseplate injector RU84_11885 PF03180 NLPA lipoprotein RU84_11890 PF05987 Bacterial protein of unknown function (DUF898) RU84_11935 PF02384 N-6 DNA Methylase RU84_11940 PF00271 Helicase conserved C-terminal domain RU84_11940 PF08463 EcoEI R protein C-terminal RU84_11940 PF04851 Type III restriction enzyme, res subunit RU84_11940 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) RU84_11970 PF13936 Helix-turn-helix domain RU84_11970 PF00665 Integrase core domain RU84_11985 PF07728 AAA domain (dynein-related subfamily) RU84_11985 PF12102 Domain of unknown function (DUF3578) RU84_12060 PF02463 RecF/RecN/SMC N terminal domain RU84_12065 PF00589 Phage integrase family RU84_12065 PF13356 Arm DNA-binding domain RU84_12075 PF00724 NADH:flavin oxidoreductase / NADH oxidase family RU84_12075 PF07992 Pyridine nucleotide-disulphide oxidoreductase RU84_12080 PF00764 Arginosuccinate synthase RU84_12085 PF00563 EAL domain RU84_12085 PF00990 Diguanylate cyclase, GGDEF domain RU84_12085 PF00360 Phytochrome region RU84_12085 PF01590 GAF domain RU84_12090 PF01979 Amidohydrolase family RU84_12095 PF00929 Exonuclease RU84_12105 PF07715 TonB-dependent Receptor Plug Domain RU84_12105 PF00593 TonB dependent receptor RU84_12110 PF07992 Pyridine nucleotide-disulphide oxidoreductase RU84_12110 PF00724 NADH:flavin oxidoreductase / NADH oxidase family RU84_12115 PF08352 Oligopeptide/dipeptide transporter, C-terminal region RU84_12115 PF00005 ABC transporter RU84_12120 PF12911 N-terminal TM domain of oligopeptide transport permease C RU84_12120 PF00528 Binding-protein-dependent transport system inner membrane component RU84_12125 PF00528 Binding-protein-dependent transport system inner membrane component RU84_12130 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle RU84_12135 PF01476 LysM domain RU84_12135 PF01464 Transglycosylase SLT domain RU84_12135 PF01476 LysM domain RU84_12135 PF01464 Transglycosylase SLT domain RU84_12140 PF00929 Exonuclease RU84_12150 PF09297 NADH pyrophosphatase zinc ribbon domain RU84_12150 PF00293 NUDIX domain RU84_12160 PF04972 BON domain RU84_12165 PF02021 Uncharacterised protein family UPF0102 RU84_12170 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases RU84_12180 PF03466 LysR substrate binding domain RU84_12180 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RU84_12185 PF01810 LysE type translocator RU84_12195 PF13411 MerR HTH family regulatory protein RU84_12205 PF01494 FAD binding domain RU84_12210 PF01494 FAD binding domain RU84_12215 PF05195 Aminopeptidase P, N-terminal domain RU84_12215 PF00557 Metallopeptidase family M24 RU84_12255 PF00717 Peptidase S24-like RU84_12260 PF13438 Domain of unknown function (DUF4113) RU84_12260 PF00817 impB/mucB/samB family RU84_12260 PF11799 impB/mucB/samB family C-terminal domain RU84_12305 PF08525 Opacity-associated protein A N-terminal motif RU84_12305 PF01551 Peptidase family M23 RU84_12305 PF01476 LysM domain RU84_12320 PF15919 HicB_like antitoxin of bacterial toxin-antitoxin system RU84_12445 PF13936 Helix-turn-helix domain RU84_12445 PF00665 Integrase core domain RU84_12530 PF01381 Helix-turn-helix RU84_12600 PF01812 5-formyltetrahydrofolate cyclo-ligase family RU84_12605 PF00004 ATPase family associated with various cellular activities (AAA) RU84_12605 PF02190 ATP-dependent protease La (LON) substrate-binding domain RU84_12605 PF05362 Lon protease (S16) C-terminal proteolytic domain RU84_12610 PF02590 Predicted SPOUT methyltransferase RU84_12615 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase RU84_12625 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain RU84_12625 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase RU84_12630 PF04060 Putative Fe-S cluster RU84_12635 PF10576 Iron-sulfur binding domain of endonuclease III RU84_12635 PF00633 Helix-hairpin-helix motif RU84_12635 PF00730 HhH-GPD superfamily base excision DNA repair protein RU84_12640 PF05191 Adenylate kinase, active site lid RU84_12655 PF03717 Penicillin-binding Protein dimerisation domain RU84_12655 PF00905 Penicillin binding protein transpeptidase domain RU84_12670 PF02492 CobW/HypB/UreG, nucleotide-binding domain RU84_12675 PF01730 UreF RU84_12680 PF05194 UreE urease accessory protein, C-terminal domain RU84_12680 PF02814 UreE urease accessory protein, N-terminal domain RU84_12685 PF01979 Amidohydrolase family RU84_12685 PF00449 Urease alpha-subunit, N-terminal domain RU84_12690 PF00699 Urease beta subunit RU84_12695 PF00547 Urease, gamma subunit RU84_12700 PF01774 UreD urease accessory protein RU84_12715 PF00463 Isocitrate lyase family RU84_12720 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RU84_12720 PF03466 LysR substrate binding domain RU84_12725 PF00571 CBS domain RU84_12725 PF03471 Transporter associated domain RU84_12725 PF01595 Cyclin M transmembrane N-terminal domain RU84_12730 PF03600 Citrate transporter RU84_12745 PF00009 Elongation factor Tu GTP binding domain RU84_12750 PF01507 Phosphoadenosine phosphosulfate reductase family RU84_12755 PF14052 Capsule assembly protein Wzi RU84_12760 PF00152 tRNA synthetases class II (D, K and N) RU84_12760 PF01336 OB-fold nucleic acid binding domain RU84_12775 PF00301 Rubredoxin RU84_12780 PF18113 Rubredoxin binding C-terminal domain RU84_12780 PF07992 Pyridine nucleotide-disulphide oxidoreductase RU84_12785 PF00561 alpha/beta hydrolase fold RU84_12790 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RU84_12790 PF03466 LysR substrate binding domain RU84_12800 PF17941 Polyphosphate kinase C-terminal domain 1 RU84_12800 PF13090 Polyphosphate kinase C-terminal domain 2 RU84_12800 PF02503 Polyphosphate kinase middle domain RU84_12800 PF13089 Polyphosphate kinase N-terminal domain RU84_12805 PF00912 Transglycosylase RU84_12810 PF01694 Rhomboid family RU84_12820 PF00005 ABC transporter RU84_12825 PF13472 GDSL-like Lipase/Acylhydrolase family RU84_12830 PF00484 Carbonic anhydrase RU84_12845 PF00593 TonB dependent receptor RU84_12845 PF07715 TonB-dependent Receptor Plug Domain RU84_12850 PF01521 Iron-sulphur cluster biosynthesis RU84_12850 PF01106 NifU-like domain RU84_12860 PF00884 Sulfatase RU84_12865 PF03781 Sulfatase-modifying factor enzyme 1 RU84_12880 PF00291 Pyridoxal-phosphate dependent enzyme RU84_12885 PF01384 Phosphate transporter family RU84_12890 PF02965 Vitamin B12 dependent methionine synthase, activation domain RU84_12890 PF02607 B12 binding domain RU84_12890 PF02310 B12 binding domain RU84_12890 PF00809 Pterin binding enzyme RU84_12890 PF02574 Homocysteine S-methyltransferase RU84_12895 PF02779 Transketolase, pyrimidine binding domain RU84_12895 PF02780 Transketolase, C-terminal domain RU84_12900 PF00456 Transketolase, thiamine diphosphate binding domain RU84_12905 PF07690 Major Facilitator Superfamily RU84_12915 PF03466 LysR substrate binding domain RU84_12915 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RU84_12925 PF01263 Aldose 1-epimerase RU84_12930 PF07690 Major Facilitator Superfamily RU84_12940 PF04960 Glutaminase RU84_12945 PF01327 Polypeptide deformylase RU84_12950 PF07690 Major Facilitator Superfamily RU84_12960 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain RU84_12960 PF00205 Thiamine pyrophosphate enzyme, central domain RU84_12960 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain RU84_12965 PF00171 Aldehyde dehydrogenase family RU84_12970 PF01958 Domain of unknown function DUF108 RU84_12970 PF03447 Homoserine dehydrogenase, NAD binding domain RU84_12980 PF12697 Alpha/beta hydrolase family RU84_12990 PF07690 Major Facilitator Superfamily RU84_12995 PF07992 Pyridine nucleotide-disulphide oxidoreductase RU84_12995 PF14759 Reductase C-terminal RU84_13000 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily RU84_13010 PF00355 Rieske [2Fe-2S] domain RU84_13020 PF00355 Rieske [2Fe-2S] domain RU84_13025 PF01614 Bacterial transcriptional regulator RU84_13025 PF09339 IclR helix-turn-helix domain RU84_13040 PF00378 Enoyl-CoA hydratase/isomerase RU84_13050 PF00535 Glycosyl transferase family 2 RU84_13055 PF01522 Polysaccharide deacetylase RU84_13055 PF14883 Hypothetical glycosyl hydrolase family 13 RU84_13060 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase RU84_13065 PF07152 YaeQ protein RU84_13070 PF00375 Sodium:dicarboxylate symporter family RU84_13075 PF07683 Cobalamin synthesis protein cobW C-terminal domain RU84_13075 PF02492 CobW/HypB/UreG, nucleotide-binding domain RU84_13085 PF03061 Thioesterase superfamily RU84_13095 PF02028 BCCT, betaine/carnitine/choline family transporter RU84_13100 PF02028 BCCT, betaine/carnitine/choline family transporter RU84_13105 PF13977 BetI-type transcriptional repressor, C-terminal RU84_13105 PF00440 Bacterial regulatory proteins, tetR family RU84_13110 PF00171 Aldehyde dehydrogenase family RU84_13115 PF00732 GMC oxidoreductase RU84_13115 PF05199 GMC oxidoreductase RU84_13120 PF06039 Malate:quinone oxidoreductase (Mqo) RU84_13130 PF02574 Homocysteine S-methyltransferase RU84_13135 PF13520 Amino acid permease RU84_13160 PF00701 Dihydrodipicolinate synthetase family RU84_13165 PF00083 Sugar (and other) transporter RU84_13300 PF02767 DNA polymerase III beta subunit, central domain RU84_13300 PF02768 DNA polymerase III beta subunit, C-terminal domain RU84_13300 PF00712 DNA polymerase III beta subunit, N-terminal domain RU84_13465 PF07007 Lysozyme inhibitor LprI RU84_13510 PF01695 IstB-like ATP binding protein RU84_13520 PF00145 C-5 cytosine-specific DNA methylase RU84_13565 PF01381 Helix-turn-helix RU84_13565 PF00717 Peptidase S24-like RU84_13600 PF00929 Exonuclease RU84_13665 PF07690 Major Facilitator Superfamily RU84_13670 PF13533 Biotin-lipoyl like RU84_13675 PF03061 Thioesterase superfamily RU84_13680 PF00490 Delta-aminolevulinic acid dehydratase RU84_13685 PF01266 FAD dependent oxidoreductase RU84_13690 PF08338 Domain of unknown function (DUF1731) RU84_13690 PF01370 NAD dependent epimerase/dehydratase family RU84_13710 PF00149 Calcineurin-like phosphoesterase RU84_13710 PF12320 Type 5 capsule protein repressor C-terminal domain RU84_13720 PF01168 Alanine racemase, N-terminal domain RU84_13725 PF00437 Type II/IV secretion system protein RU84_13730 PF00437 Type II/IV secretion system protein RU84_13735 PF01475 Ferric uptake regulator family RU84_13740 PF04355 SmpA / OmlA family RU84_13745 PF03658 RnfH family Ubiquitin RU84_13755 PF01814 Hemerythrin HHE cation binding domain RU84_13760 PF13230 Glutamine amidotransferases class-II RU84_13770 PF00696 Amino acid kinase family RU84_13775 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I RU84_13775 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II RU84_13775 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III RU84_13775 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain RU84_13780 PF00692 dUTPase RU84_13785 PF00580 UvrD/REP helicase N-terminal domain RU84_13785 PF13361 UvrD-like helicase C-terminal domain RU84_13790 PF13488 Glycine zipper RU84_13790 PF00691 OmpA family RU84_13795 PF01553 Acyltransferase RU84_13805 PF03775 Septum formation inhibitor MinC, C-terminal domain RU84_13810 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain RU84_13815 PF03776 Septum formation topological specificity factor MinE RU84_13830 PF01810 LysE type translocator RU84_13835 PF17854 FtsK alpha domain RU84_13835 PF01580 FtsK/SpoIIIE family RU84_13835 PF09397 Ftsk gamma domain RU84_13835 PF13491 4TM region of DNA translocase FtsK/SpoIIIE RU84_13840 PF07992 Pyridine nucleotide-disulphide oxidoreductase RU84_13845 PF03588 Leucyl/phenylalanyl-tRNA protein transferase RU84_13850 PF04376 Arginine-tRNA-protein transferase, N terminus RU84_13850 PF04377 Arginine-tRNA-protein transferase, C terminus RU84_13855 PF00583 Acetyltransferase (GNAT) family RU84_13870 PF03144 Elongation factor Tu domain 2 RU84_13870 PF03143 Elongation factor Tu C-terminal domain RU84_13870 PF00009 Elongation factor Tu GTP binding domain RU84_13875 PF00009 Elongation factor Tu GTP binding domain RU84_13875 PF03764 Elongation factor G, domain IV RU84_13875 PF14492 Elongation Factor G, domain II RU84_13875 PF03144 Elongation factor Tu domain 2 RU84_13875 PF00679 Elongation factor G C-terminus RU84_13880 PF00177 Ribosomal protein S7p/S5e RU84_13885 PF00164 Ribosomal protein S12/S23 RU84_13895 PF00109 Beta-ketoacyl synthase, N-terminal domain RU84_13895 PF02801 Beta-ketoacyl synthase, C-terminal domain RU84_13905 PF02678 Pirin RU84_13905 PF05726 Pirin C-terminal cupin domain RU84_13915 PF02540 NAD synthase RU84_13915 PF00795 Carbon-nitrogen hydrolase RU84_13930 PF00970 Oxidoreductase FAD-binding domain RU84_13930 PF00111 2Fe-2S iron-sulfur cluster binding domain RU84_13930 PF00175 Oxidoreductase NAD-binding domain RU84_13935 PF00171 Aldehyde dehydrogenase family RU84_13940 PF00355 Rieske [2Fe-2S] domain RU84_13940 PF00848 Ring hydroxylating alpha subunit (catalytic domain) RU84_13945 PF07859 alpha/beta hydrolase fold RU84_13950 PF02028 BCCT, betaine/carnitine/choline family transporter RU84_13955 PF00180 Isocitrate/isopropylmalate dehydrogenase RU84_13960 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RU84_13960 PF03466 LysR substrate binding domain RU84_13975 PF00037 4Fe-4S binding domain RU84_13980 PF01467 Cytidylyltransferase-like RU84_13985 PF13356 Arm DNA-binding domain RU84_13985 PF00589 Phage integrase family RU84_14220 PF03796 DnaB-like helicase C terminal domain RU84_14220 PF00772 DnaB-like helicase N terminal domain RU84_14240 PF01381 Helix-turn-helix RU84_14255 PF13936 Helix-turn-helix domain RU84_14255 PF00665 Integrase core domain RU84_14320 PF01668 SmpB protein RU84_14325 PF03358 NADPH-dependent FMN reductase RU84_14335 PF00849 RNA pseudouridylate synthase RU84_14335 PF01479 S4 domain RU84_14340 PF13525 Outer membrane lipoprotein RU84_14345 PF10410 DnaB-helicase binding domain of primase RU84_14345 PF08278 DNA primase DnaG DnaB-binding RU84_14345 PF01807 CHC2 zinc finger RU84_14345 PF08275 DNA primase catalytic core, N-terminal domain RU84_14350 PF01488 Shikimate / quinate 5-dehydrogenase RU84_14350 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain RU84_14350 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain RU84_14360 PF03550 Outer membrane lipoprotein LolB RU84_14365 PF08544 GHMP kinases C terminal RU84_14365 PF00288 GHMP kinases N terminal domain RU84_14390 PF14572 Phosphoribosyl synthetase-associated domain RU84_14390 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase RU84_14395 PF01386 Ribosomal L25p family RU84_14400 PF01195 Peptidyl-tRNA hydrolase RU84_14405 PF02261 Aspartate decarboxylase RU84_14420 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase RU84_14430 PF03070 TENA/THI-4/PQQC family RU84_14430 PF02581 Thiamine monophosphate synthase RU84_14430 PF08543 Phosphomethylpyrimidine kinase RU84_14435 PF01476 LysM domain RU84_14435 PF04972 BON domain RU84_14440 PF00550 Phosphopantetheine attachment site RU84_14450 PF00698 Acyl transferase domain RU84_14455 PF01783 Ribosomal L32p protein family RU84_14460 PF02620 Large ribosomal RNA subunit accumulation protein YceD RU84_14465 PF04315 Elongation factor P hydroxylase RU84_14470 PF01300 Telomere recombination RU84_14475 PF02616 Segregation and condensation protein ScpA RU84_14480 PF04079 Segregation and condensation complex subunit ScpB RU84_14485 PF00849 RNA pseudouridylate synthase RU84_14485 PF01479 S4 domain RU84_14500 PF00155 Aminotransferase class I and II RU84_14505 PF00202 Aminotransferase class-III RU84_14505 PF06968 Biotin and Thiamin Synthesis associated domain RU84_14505 PF04055 Radical SAM superfamily RU84_14510 PF08241 Methyltransferase domain RU84_14510 PF12697 Alpha/beta hydrolase family RU84_14515 PF02358 Trehalose-phosphatase RU84_14520 PF00982 Glycosyltransferase family 20 RU84_14525 PF07690 Major Facilitator Superfamily RU84_14530 PF00210 Ferritin-like domain RU84_14535 PF03120 NAD-dependent DNA ligase OB-fold domain RU84_14535 PF12826 Helix-hairpin-helix motif RU84_14535 PF01653 NAD-dependent DNA ligase adenylation domain RU84_14535 PF03119 NAD-dependent DNA ligase C4 zinc finger domain RU84_14535 PF00533 BRCA1 C Terminus (BRCT) domain RU84_14545 PF06470 SMC proteins Flexible Hinge Domain RU84_14545 PF02463 RecF/RecN/SMC N terminal domain RU84_14555 PF01925 Sulfite exporter TauE/SafE RU84_14565 PF03309 Type III pantothenate kinase RU84_14570 PF00448 SRP54-type protein, GTPase domain RU84_14570 PF02978 Signal peptide binding domain RU84_14570 PF02881 SRP54-type protein, helical bundle domain RU84_14580 PF01207 Dihydrouridine synthase (Dus) RU84_14610 PF00692 dUTPase RU84_14625 PF01048 Phosphorylase superfamily RU84_14635 PF10609 NUBPL iron-transfer P-loop NTPase RU84_14645 PF01588 Putative tRNA binding domain RU84_14645 PF09334 tRNA synthetases class I (M) RU84_14670 PF13533 Biotin-lipoyl like RU84_14675 PF00291 Pyridoxal-phosphate dependent enzyme RU84_14690 PF05552 Conserved TM helix RU84_14705 PF00970 Oxidoreductase FAD-binding domain RU84_14705 PF00175 Oxidoreductase NAD-binding domain RU84_14710 PF03466 LysR substrate binding domain RU84_14710 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RU84_14715 PF00313 'Cold-shock' DNA-binding domain RU84_14725 PF00361 Proton-conducting membrane transporter RU84_14730 PF00361 Proton-conducting membrane transporter RU84_14735 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus RU84_14735 PF00361 Proton-conducting membrane transporter RU84_14740 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L RU84_14745 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 RU84_14750 PF12838 4Fe-4S dicluster domain RU84_14755 PF00146 NADH dehydrogenase RU84_14760 PF04879 Molybdopterin oxidoreductase Fe4S4 domain RU84_14760 PF00384 Molybdopterin oxidoreductase RU84_14760 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region RU84_14765 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region RU84_14765 PF10531 SLBB domain RU84_14765 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit RU84_14775 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit RU84_14775 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit RU84_14780 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit RU84_14785 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 RU84_14790 PF00990 Diguanylate cyclase, GGDEF domain RU84_14790 PF17158 Membrane-associated sensor, integral membrane domain RU84_14800 PF00672 HAMP domain RU84_14800 PF00512 His Kinase A (phospho-acceptor) domain RU84_14800 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RU84_14805 PF00072 Response regulator receiver domain RU84_14805 PF00486 Transcriptional regulatory protein, C terminal RU84_14815 PF00317 Ribonucleotide reductase, all-alpha domain RU84_14815 PF03477 ATP cone domain RU84_14815 PF02867 Ribonucleotide reductase, barrel domain RU84_14825 PF00268 Ribonucleotide reductase, small chain RU84_14840 PF17074 Darcynin, domain of unknown function RU84_14860 PF01613 Flavin reductase like domain RU84_14865 PF01717 Cobalamin-independent synthase, Catalytic domain RU84_14865 PF08267 Cobalamin-independent synthase, N-terminal domain RU84_14880 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term RU84_14880 PF12833 Helix-turn-helix domain RU84_14885 PF01546 Peptidase family M20/M25/M40 RU84_14885 PF07687 Peptidase dimerisation domain RU84_14895 PF03466 LysR substrate binding domain RU84_14895 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RU84_14900 PF07690 Major Facilitator Superfamily RU84_14910 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RU84_14910 PF03466 LysR substrate binding domain RU84_14915 PF00890 FAD binding domain RU84_14915 PF14537 Cytochrome c3 RU84_14930 PF00440 Bacterial regulatory proteins, tetR family RU84_14930 PF17932 Tetracyclin repressor-like, C-terminal domain RU84_14935 PF02515 CoA-transferase family III RU84_14940 PF07690 Major Facilitator Superfamily RU84_14945 PF02770 Acyl-CoA dehydrogenase, middle domain RU84_14945 PF02771 Acyl-CoA dehydrogenase, N-terminal domain RU84_14945 PF00441 Acyl-CoA dehydrogenase, C-terminal domain RU84_14950 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RU84_14950 PF03466 LysR substrate binding domain RU84_14955 PF08240 Alcohol dehydrogenase GroES-like domain RU84_14955 PF00107 Zinc-binding dehydrogenase RU84_14960 PF00962 Adenosine/AMP deaminase RU84_14985 PF02445 Quinolinate synthetase A protein RU84_14990 PF01960 ArgJ family RU84_14995 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain RU84_14995 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain RU84_15000 PF00893 Small Multidrug Resistance protein RU84_15015 PF00394 Multicopper oxidase RU84_15015 PF07731 Multicopper oxidase RU84_15015 PF07732 Multicopper oxidase RU84_15030 PF00834 Ribulose-phosphate 3 epimerase family RU84_15040 PF00756 Putative esterase RU84_15050 PF04445 Putative SAM-dependent methyltransferase RU84_15055 PF00814 Glycoprotease family RU84_15060 PF00132 Bacterial transferase hexapeptide (six repeats) RU84_15065 PF00293 NUDIX domain RU84_15110 PF00425 chorismate binding enzyme RU84_15110 PF04715 Anthranilate synthase component I, N terminal region RU84_15115 PF00155 Aminotransferase class I and II RU84_15120 PF00815 Histidinol dehydrogenase RU84_15125 PF01634 ATP phosphoribosyltransferase RU84_15130 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) RU84_15135 PF01722 BolA-like protein RU84_15140 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein RU84_15145 PF04963 Sigma-54 factor, core binding domain RU84_15145 PF04552 Sigma-54, DNA binding domain RU84_15145 PF00309 Sigma-54 factor, Activator interacting domain (AID) RU84_15190 PF00795 Carbon-nitrogen hydrolase RU84_15200 PF01047 MarR family RU84_15205 PF02566 OsmC-like protein RU84_15210 PF00437 Type II/IV secretion system protein RU84_15230 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain RU84_15230 PF00476 DNA polymerase family A RU84_15230 PF01367 5'-3' exonuclease, C-terminal SAM fold RU84_15230 PF01612 3'-5' exonuclease RU84_15235 PF02325 YGGT family RU84_15240 PF14748 Pyrroline-5-carboxylate reductase dimerisation RU84_15240 PF03807 NADP oxidoreductase coenzyme F420-dependent RU84_15245 PF01171 PP-loop family RU84_15245 PF11734 TilS substrate C-terminal domain RU84_15245 PF09179 TilS substrate binding domain RU84_15250 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit RU84_15255 PF02541 Ppx/GppA phosphatase family RU84_15260 PF00085 Thioredoxin RU84_15265 PF07497 Rho termination factor, RNA-binding domain RU84_15265 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain RU84_15265 PF07498 Rho termination factor, N-terminal domain RU84_15275 PF00216 Bacterial DNA-binding protein RU84_15280 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain RU84_15280 PF01588 Putative tRNA binding domain RU84_15280 PF03147 Ferredoxin-fold anticodon binding domain RU84_15280 PF03484 tRNA synthetase B5 domain RU84_15280 PF03483 B3/4 domain RU84_15285 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain RU84_15285 PF01409 tRNA synthetases class II core domain (F) RU84_15305 PF00453 Ribosomal protein L20 RU84_15310 PF01632 Ribosomal protein L35 RU84_15315 PF07690 Major Facilitator Superfamily RU84_15320 PF09335 SNARE associated Golgi protein RU84_15325 PF00043 Glutathione S-transferase, C-terminal domain RU84_15325 PF02798 Glutathione S-transferase, N-terminal domain RU84_15330 PF00707 Translation initiation factor IF-3, C-terminal domain RU84_15330 PF05198 Translation initiation factor IF-3, N-terminal domain RU84_15335 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain RU84_15335 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) RU84_15335 PF03129 Anticodon binding domain RU84_15335 PF02824 TGS domain RU84_15340 PF00501 AMP-binding enzyme RU84_15340 PF13193 AMP-binding enzyme C-terminal domain RU84_15345 PF04751 Protein of unknown function (DUF615) RU84_15350 PF00381 PTS HPr component phosphorylation site RU84_15355 PF03668 P-loop ATPase protein family RU84_15360 PF02569 Pantoate-beta-alanine ligase RU84_15365 PF02548 Ketopantoate hydroxymethyltransferase RU84_15370 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) RU84_15375 PF12627 Probable RNA and SrmB- binding site of polymerase A RU84_15375 PF12626 Polymerase A arginine-rich C-terminus RU84_15375 PF01743 Poly A polymerase head domain RU84_15385 PF03819 MazG nucleotide pyrophosphohydrolase domain RU84_15395 PF02824 TGS domain RU84_15395 PF13291 ACT domain RU84_15395 PF04607 Region found in RelA / SpoT proteins RU84_15400 PF05958 tRNA (Uracil-5-)-methyltransferase RU84_15410 PF00291 Pyridoxal-phosphate dependent enzyme RU84_15415 PF01627 Hpt domain RU84_15415 PF00512 His Kinase A (phospho-acceptor) domain RU84_15415 PF00072 Response regulator receiver domain RU84_15415 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) RU84_15415 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RU84_15415 PF00672 HAMP domain RU84_15420 PF00378 Enoyl-CoA hydratase/isomerase RU84_15425 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase RU84_15425 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase RU84_15430 PF01261 Xylose isomerase-like TIM barrel RU84_15440 PF00106 short chain dehydrogenase RU84_15445 PF02233 NAD(P) transhydrogenase beta subunit RU84_15450 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch RU84_15455 PF01262 Alanine dehydrogenase/PNT, C-terminal domain RU84_15455 PF05222 Alanine dehydrogenase/PNT, N-terminal domain RU84_15460 PF00892 EamA-like transporter family RU84_15470 PF07690 Major Facilitator Superfamily RU84_15500 PF07992 Pyridine nucleotide-disulphide oxidoreductase RU84_15505 PF03358 NADPH-dependent FMN reductase RU84_15510 PF01758 Sodium Bile acid symporter family RU84_15520 PF01022 Bacterial regulatory protein, arsR family RU84_15525 PF03960 ArsC family RU84_15530 PF13411 MerR HTH family regulatory protein RU84_15545 PF07664 Ferrous iron transport protein B C terminus RU84_15545 PF02421 Ferrous iron transport protein B RU84_15545 PF07670 Nucleoside recognition RU84_15555 PF00873 AcrB/AcrD/AcrF family RU84_15560 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion RU84_15580 PF07731 Multicopper oxidase RU84_15580 PF00394 Multicopper oxidase RU84_15580 PF07732 Multicopper oxidase RU84_15590 PF00486 Transcriptional regulatory protein, C terminal RU84_15590 PF00072 Response regulator receiver domain RU84_15595 PF00512 His Kinase A (phospho-acceptor) domain RU84_15595 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RU84_15595 PF00672 HAMP domain RU84_15600 PF04945 YHS domain RU84_15665 PF00589 Phage integrase family RU84_15670 PF01207 Dihydrouridine synthase (Dus) RU84_15685 PF00665 Integrase core domain RU84_15685 PF13936 Helix-turn-helix domain RU84_15690 PF00899 ThiF family RU84_15695 PF00694 Aconitase C-terminal domain RU84_15695 PF00330 Aconitase family (aconitate hydratase) RU84_15700 PF01026 TatD related DNase RU84_15715 PF16658 Class II release factor RF3, C-terminal domain RU84_15715 PF00009 Elongation factor Tu GTP binding domain RU84_15715 PF03144 Elongation factor Tu domain 2 RU84_15735 PF00990 Diguanylate cyclase, GGDEF domain RU84_15735 PF00563 EAL domain RU84_15735 PF03707 Bacterial signalling protein N terminal repeat RU84_15740 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain RU84_15740 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain RU84_15745 PF10369 Small subunit of acetolactate synthase RU84_15750 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain RU84_15750 PF00205 Thiamine pyrophosphate enzyme, central domain RU84_15750 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain RU84_15760 PF09334 tRNA synthetases class I (M) RU84_15760 PF13603 Leucyl-tRNA synthetase, Domain 2 RU84_15760 PF00133 tRNA synthetases class I (I, L, M and V) RU84_15760 PF08264 Anticodon-binding domain of tRNA RU84_15775 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion RU84_15780 PF02687 FtsX-like permease family RU84_15780 PF00005 ABC transporter RU84_15780 PF12704 MacB-like periplasmic core domain RU84_15785 PF02321 Outer membrane efflux protein RU84_15800 PF00929 Exonuclease RU84_15805 PF03193 RsgA GTPase RU84_15815 PF00462 Glutaredoxin RU84_15820 PF02556 Preprotein translocase subunit SecB RU84_15830 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal RU84_15830 PF01926 50S ribosome-binding GTPase RU84_15835 PF13360 PQQ-like domain RU84_15845 PF13393 Histidyl-tRNA synthetase RU84_15845 PF03129 Anticodon binding domain RU84_15850 PF04551 GcpE protein RU84_15855 PF13464 Domain of unknown function (DUF4115) RU84_15865 PF04055 Radical SAM superfamily RU84_15870 PF00334 Nucleoside diphosphate kinase RU84_15875 PF04384 Iron-sulphur cluster assembly RU84_15880 PF01569 PAP2 superfamily RU84_15885 PF13439 Glycosyltransferase Family 4 RU84_15885 PF00534 Glycosyl transferases group 1 RU84_15890 PF11818 C-terminal domain of tail specific protease (DUF3340) RU84_15890 PF03572 Peptidase family S41 RU84_15890 PF17804 Tail specific protease N-terminal domain RU84_15890 PF00595 PDZ domain RU84_15895 PF00933 Glycosyl hydrolase family 3 N terminal domain RU84_15905 PF12697 Alpha/beta hydrolase family RU84_15910 PF00171 Aldehyde dehydrogenase family RU84_15915 PF00171 Aldehyde dehydrogenase family RU84_15920 PF01202 Shikimate kinase RU84_15925 PF02447 GntP family permease RU84_15930 PF01081 KDPG and KHG aldolase RU84_15935 PF00920 Dehydratase family RU84_15940 PF00871 Acetokinase family RU84_15945 PF01515 Phosphate acetyl/butaryl transferase RU84_15945 PF07085 DRTGG domain RU84_15950 PF05681 Fumarate hydratase (Fumerase) RU84_15950 PF05683 Fumarase C-terminus RU84_15965 PF07724 AAA domain (Cdc48 subfamily) RU84_15965 PF10431 C-terminal, D2-small domain, of ClpB protein RU84_15965 PF06689 ClpX C4-type zinc finger RU84_15970 PF00574 Clp protease RU84_15975 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase RU84_15975 PF05698 Bacterial trigger factor protein (TF) C-terminus RU84_15975 PF05697 Bacterial trigger factor protein (TF) RU84_15980 PF00593 TonB dependent receptor RU84_15980 PF07715 TonB-dependent Receptor Plug Domain RU84_15985 PF18331 PKHD-type hydroxylase C-terminal domain RU84_15985 PF13640 2OG-Fe(II) oxygenase superfamily RU84_15990 PF08502 LeuA allosteric (dimerisation) domain RU84_15990 PF00682 HMGL-like RU84_15995 PF00561 alpha/beta hydrolase fold RU84_16000 PF00561 alpha/beta hydrolase fold RU84_16000 PF07021 Methionine biosynthesis protein MetW RU84_16010 PF01725 Ham1 family RU84_16020 PF02416 mttA/Hcf106 family RU84_16025 PF02416 mttA/Hcf106 family RU84_16030 PF00902 Sec-independent protein translocase protein (TatC) RU84_16050 PF01790 Prolipoprotein diacylglyceryl transferase RU84_16065 PF00303 Thymidylate synthase RU84_16070 PF00186 Dihydrofolate reductase RU84_16080 PF01625 Peptide methionine sulfoxide reductase RU84_16090 PF01618 MotA/TolQ/ExbB proton channel family RU84_16100 PF01842 ACT domain RU84_16100 PF00551 Formyl transferase RU84_16110 PF00171 Aldehyde dehydrogenase family RU84_16115 PF00830 Ribosomal L28 family RU84_16120 PF00471 Ribosomal protein L33 RU84_16125 PF00999 Sodium/hydrogen exchanger family RU84_16125 PF02254 TrkA-N domain RU84_16145 PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) RU84_16150 PF13361 UvrD-like helicase C-terminal domain RU84_16150 PF00580 UvrD/REP helicase N-terminal domain RU84_16165 PF08272 Topoisomerase I zinc-ribbon-like RU84_16165 PF01131 DNA topoisomerase RU84_16165 PF01751 Toprim domain RU84_16165 PF01396 Topoisomerase DNA binding C4 zinc finger RU84_16175 PF01638 HxlR-like helix-turn-helix RU84_16180 PF00107 Zinc-binding dehydrogenase RU84_16180 PF08240 Alcohol dehydrogenase GroES-like domain RU84_16195 PF01810 LysE type translocator RU84_16200 PF03279 Bacterial lipid A biosynthesis acyltransferase RU84_16210 PF00375 Sodium:dicarboxylate symporter family RU84_16220 PF01118 Semialdehyde dehydrogenase, NAD binding domain RU84_16220 PF02774 Semialdehyde dehydrogenase, dimerisation domain RU84_16235 PF00710 Asparaginase, N-terminal RU84_16235 PF17763 Glutaminase/Asparaginase C-terminal domain RU84_16240 PF01416 tRNA pseudouridine synthase RU84_16250 PF01176 Translation initiation factor 1A / IF-1 RU84_16265 PF00180 Isocitrate/isopropylmalate dehydrogenase RU84_16275 PF00694 Aconitase C-terminal domain RU84_16280 PF00330 Aconitase family (aconitate hydratase) RU84_16290 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RU84_16290 PF03466 LysR substrate binding domain RU84_16300 PF00293 NUDIX domain RU84_16305 PF05524 PEP-utilising enzyme, N-terminal RU84_16305 PF02896 PEP-utilising enzyme, TIM barrel domain RU84_16305 PF01590 GAF domain RU84_16305 PF00391 PEP-utilising enzyme, mobile domain RU84_16310 PF00141 Peroxidase RU84_16315 PF12706 Beta-lactamase superfamily domain RU84_16320 PF03466 LysR substrate binding domain RU84_16320 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RU84_16330 PF02798 Glutathione S-transferase, N-terminal domain RU84_16335 PF13280 WYL domain RU84_16335 PF08279 HTH domain RU84_16340 PF13419 Haloacid dehalogenase-like hydrolase RU84_16345 PF00849 RNA pseudouridylate synthase RU84_16345 PF01479 S4 domain RU84_16350 PF00575 S1 RNA binding domain RU84_16350 PF10150 Ribonuclease E/G family RU84_16350 PF12111 Polyribonucleotide phosphorylase C terminal RU84_16355 PF00501 AMP-binding enzyme RU84_16355 PF13193 AMP-binding enzyme C-terminal domain RU84_16370 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RU84_16370 PF03466 LysR substrate binding domain RU84_16380 PF06969 HemN C-terminal domain RU84_16380 PF04055 Radical SAM superfamily RU84_16390 PF01554 MatE RU84_16395 PF02771 Acyl-CoA dehydrogenase, N-terminal domain RU84_16395 PF02770 Acyl-CoA dehydrogenase, middle domain RU84_16395 PF08028 Acyl-CoA dehydrogenase, C-terminal domain RU84_16400 PF02771 Acyl-CoA dehydrogenase, N-terminal domain RU84_16400 PF08028 Acyl-CoA dehydrogenase, C-terminal domain RU84_16405 PF03109 ABC1 family RU84_16410 PF01197 Ribosomal protein L31 RU84_16470 PF02537 CrcB-like protein, Camphor Resistance (CrcB) RU84_16490 PF03884 DNA gyrase inhibitor YacG RU84_16495 PF00753 Metallo-beta-lactamase superfamily RU84_16500 PF00762 Ferrochelatase RU84_16510 PF01177 Asp/Glu/Hydantoin racemase RU84_16530 PF01206 Sulfurtransferase TusA RU84_16535 PF00571 CBS domain RU84_16535 PF03471 Transporter associated domain RU84_16540 PF00795 Carbon-nitrogen hydrolase RU84_16545 PF01588 Putative tRNA binding domain RU84_16555 PF08334 Type II secretion system (T2SS), protein G RU84_16555 PF07963 Prokaryotic N-terminal methylation motif RU84_16560 PF00482 Type II secretion system (T2SS), protein F RU84_16565 PF00270 DEAD/DEAH box helicase RU84_16565 PF00271 Helicase conserved C-terminal domain RU84_16565 PF17764 3′ DNA-binding domain (3′BD) RU84_16565 PF18319 PriA DNA helicase Cys-rich region (CRR) domain RU84_16565 PF18074 Primosomal protein N C-terminal domain RU84_16570 PF00999 Sodium/hydrogen exchanger family RU84_16570 PF02254 TrkA-N domain RU84_16575 PF01430 Hsp33 protein RU84_16585 PF00226 DnaJ domain RU84_16585 PF01556 DnaJ C terminal domain RU84_16595 PF01544 CorA-like Mg2+ transporter protein RU84_16600 PF00575 S1 RNA binding domain RU84_16600 PF01138 3' exoribonuclease family, domain 1 RU84_16600 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain RU84_16600 PF00013 KH domain RU84_16600 PF03725 3' exoribonuclease family, domain 2 RU84_16605 PF00312 Ribosomal protein S15 RU84_16615 PF13538 UvrD-like helicase C-terminal domain RU84_16620 PF12705 PD-(D/E)XK nuclease superfamily RU84_16620 PF13361 UvrD-like helicase C-terminal domain RU84_16620 PF00580 UvrD/REP helicase N-terminal domain RU84_16625 PF17946 RecC C-terminal domain RU84_16635 PF03976 Polyphosphate kinase 2 (PPK2) RU84_16645 PF01209 ubiE/COQ5 methyltransferase family RU84_16655 PF03109 ABC1 family RU84_16660 PF01494 FAD binding domain RU84_16665 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily RU84_16670 PF01502 Phosphoribosyl-AMP cyclohydrolase RU84_16685 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus RU84_16685 PF13244 Domain of unknown function (DUF4040) RU84_16685 PF04039 Domain related to MnhB subunit of Na+/H+ antiporter RU84_16685 PF00361 Proton-conducting membrane transporter RU84_16690 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L RU84_16695 PF00361 Proton-conducting membrane transporter RU84_16705 PF04066 Multiple resistance and pH regulation protein F (MrpF / PhaF) RU84_16715 PF02033 Ribosome-binding factor A RU84_16720 PF00009 Elongation factor Tu GTP binding domain RU84_16720 PF04760 Translation initiation factor IF-2, N-terminal region RU84_16720 PF08364 Bacterial translation initiation factor IF-2 associated region RU84_16720 PF11987 Translation-initiation factor 2 RU84_16725 PF08529 NusA N-terminal domain RU84_16725 PF00575 S1 RNA binding domain RU84_16725 PF13184 NusA-like KH domain RU84_16730 PF02576 RimP N-terminal domain RU84_16730 PF17384 RimP C-terminal SH3 domain RU84_16750 PF03840 Preprotein translocase SecG subunit RU84_16755 PF00121 Triosephosphate isomerase RU84_16760 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain RU84_16760 PF00437 Type II/IV secretion system protein RU84_16765 PF00482 Type II secretion system (T2SS), protein F RU84_16770 PF01478 Type IV leader peptidase family RU84_16770 PF06750 Bacterial Peptidase A24 N-terminal domain RU84_16775 PF01121 Dephospho-CoA kinase RU84_16785 PF08032 RNA 2'-O ribose methyltransferase substrate binding RU84_16785 PF00588 SpoU rRNA Methylase family RU84_16790 PF06865 Pyrimidine/purine nucleoside phosphorylase RU84_16800 PF02463 RecF/RecN/SMC N terminal domain RU84_16805 PF02622 Uncharacterized ACR, COG1678 RU84_16810 PF03652 Holliday junction resolvase RU84_16815 PF13533 Biotin-lipoyl like RU84_16840 PF02805 Metal binding domain of Ada RU84_16840 PF12833 Helix-turn-helix domain RU84_16840 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain RU84_16840 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain RU84_16845 PF01066 CDP-alcohol phosphatidyltransferase RU84_16855 PF01541 GIY-YIG catalytic domain RU84_16855 PF08459 UvrC Helix-hairpin-helix N-terminal RU84_16855 PF02151 UvrB/uvrC motif RU84_16870 PF00378 Enoyl-CoA hydratase/isomerase RU84_16870 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain RU84_16870 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain RU84_16875 PF00108 Thiolase, N-terminal domain RU84_16875 PF02803 Thiolase, C-terminal domain RU84_16890 PF09278 MerR, DNA binding RU84_16890 PF00376 MerR family regulatory protein RU84_16900 PF01323 DSBA-like thioredoxin domain RU84_16915 PF00183 Hsp90 protein RU84_16915 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RU84_16930 PF13726 Na+-H+ antiporter family RU84_16930 PF03553 Na+/H+ antiporter family RU84_16955 PF04998 RNA polymerase Rpb1, domain 5 RU84_16955 PF05000 RNA polymerase Rpb1, domain 4 RU84_16955 PF04983 RNA polymerase Rpb1, domain 3 RU84_16955 PF00623 RNA polymerase Rpb1, domain 2 RU84_16955 PF04997 RNA polymerase Rpb1, domain 1 RU84_16960 PF04560 RNA polymerase Rpb2, domain 7 RU84_16960 PF00562 RNA polymerase Rpb2, domain 6 RU84_16960 PF10385 RNA polymerase beta subunit external 1 domain RU84_16960 PF04565 RNA polymerase Rpb2, domain 3 RU84_16960 PF04563 RNA polymerase beta subunit RU84_16960 PF04561 RNA polymerase Rpb2, domain 2 RU84_16965 PF00542 Ribosomal protein L7/L12 C-terminal domain RU84_16965 PF16320 Ribosomal protein L7/L12 dimerisation domain RU84_16970 PF00466 Ribosomal protein L10 RU84_16975 PF00687 Ribosomal protein L1p/L10e family RU84_16980 PF00298 Ribosomal protein L11, RNA binding domain RU84_16980 PF03946 Ribosomal protein L11, N-terminal domain RU84_16985 PF00467 KOW motif RU84_16985 PF02357 Transcription termination factor nusG RU84_16990 PF00584 SecE/Sec61-gamma subunits of protein translocation complex RU84_17000 PF03143 Elongation factor Tu C-terminal domain RU84_17000 PF03144 Elongation factor Tu domain 2 RU84_17000 PF00009 Elongation factor Tu GTP binding domain RU84_17025 PF04715 Anthranilate synthase component I, N terminal region RU84_17025 PF00425 chorismate binding enzyme RU84_17030 PF13419 Haloacid dehalogenase-like hydrolase RU84_17035 PF12401 Protein of unknown function (DUF2662) RU84_17035 PF00498 FHA domain RU84_17040 PF00263 Bacterial type II and III secretion system protein RU84_17040 PF03958 Bacterial type II/III secretion system short domain RU84_17055 PF00816 H-NS histone family RU84_17080 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain RU84_17080 PF03900 Porphobilinogen deaminase, C-terminal domain RU84_17085 PF04397 LytTr DNA-binding domain RU84_17085 PF00072 Response regulator receiver domain RU84_17090 PF07694 5TMR of 5TMR-LYT RU84_17090 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RU84_17090 PF06580 Histidine kinase RU84_17095 PF14698 Argininosuccinate lyase C-terminal RU84_17095 PF00206 Lyase RU84_17100 PF04362 Bacterial Fe(2+) trafficking RU84_17105 PF01895 PhoU domain RU84_17115 PF00892 EamA-like transporter family RU84_17130 PF13667 ThiC-associated domain RU84_17130 PF01964 Radical SAM ThiC family RU84_17135 PF00293 NUDIX domain RU84_17140 PF00149 Calcineurin-like phosphoesterase RU84_17145 PF01258 Prokaryotic dksA/traR C4-type zinc finger RU84_17150 PF00749 tRNA synthetases class I (E and Q), catalytic domain RU84_17155 PF01098 Cell cycle protein RU84_17160 PF02875 Mur ligase family, glutamate ligase domain RU84_17160 PF08245 Mur ligase middle domain RU84_17170 PF07670 Nucleoside recognition RU84_17170 PF07664 Ferrous iron transport protein B C terminus RU84_17170 PF02421 Ferrous iron transport protein B RU84_17180 PF00589 Phage integrase family RU84_17180 PF02899 Phage integrase, N-terminal SAM-like domain RU84_17185 PF13098 Thioredoxin-like domain RU84_17185 PF10411 Disulfide bond isomerase protein N-terminus RU84_17190 PF00742 Homoserine dehydrogenase RU84_17190 PF01842 ACT domain RU84_17190 PF03447 Homoserine dehydrogenase, NAD binding domain RU84_17195 PF00291 Pyridoxal-phosphate dependent enzyme RU84_17200 PF00768 D-alanyl-D-alanine carboxypeptidase RU84_17205 PF00072 Response regulator receiver domain RU84_17205 PF00196 Bacterial regulatory proteins, luxR family RU84_17210 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RU84_17210 PF00512 His Kinase A (phospho-acceptor) domain RU84_17215 PF02954 Bacterial regulatory protein, Fis family RU84_17215 PF00158 Sigma-54 interaction domain RU84_17215 PF00072 Response regulator receiver domain RU84_17220 PF00595 PDZ domain RU84_17220 PF03572 Peptidase family S41 RU84_17225 PF01676 Metalloenzyme superfamily RU84_17225 PF06415 BPG-independent PGAM N-terminus (iPGM_N) RU84_17230 PF03739 Lipopolysaccharide export system permease LptF/LptG RU84_17240 PF00883 Cytosol aminopeptidase family, catalytic domain RU84_17240 PF02789 Cytosol aminopeptidase family, N-terminal domain RU84_17260 PF00677 Lumazine binding domain RU84_17270 PF01872 RibD C-terminal domain RU84_17270 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region RU84_17275 PF03477 ATP cone domain RU84_17280 PF00909 Ammonium Transporter Family RU84_17285 PF00543 Nitrogen regulatory protein P-II RU84_17295 PF13335 Magnesium chelatase, subunit ChlI C-terminal RU84_17295 PF01078 Magnesium chelatase, subunit ChlI RU84_17300 PF00392 Bacterial regulatory proteins, gntR family RU84_17300 PF00155 Aminotransferase class I and II RU84_17310 PF00701 Dihydrodipicolinate synthetase family RU84_17320 PF03573 outer membrane porin, OprD family RU84_17325 PF00719 Inorganic pyrophosphatase RU84_17340 PF00501 AMP-binding enzyme RU84_17340 PF13193 AMP-binding enzyme C-terminal domain RU84_17345 PF03989 DNA gyrase C-terminal domain, beta-propeller RU84_17345 PF00521 DNA gyrase/topoisomerase IV, subunit A RU84_17350 PF07690 Major Facilitator Superfamily RU84_17355 PF03458 UPF0126 domain RU84_17360 PF02810 SEC-C motif RU84_17365 PF03741 Integral membrane protein TerC family RU84_17365 PF03471 Transporter associated domain RU84_17370 PF03641 Possible lysine decarboxylase RU84_17375 PF07690 Major Facilitator Superfamily RU84_17385 PF11799 impB/mucB/samB family C-terminal domain RU84_17385 PF00817 impB/mucB/samB family RU84_17385 PF11798 IMS family HHH motif RU84_17400 PF08497 Radical SAM N-terminal RU84_17400 PF04055 Radical SAM superfamily RU84_17400 PF11842 Domain of unknown function (DUF3362) RU84_17420 PF03358 NADPH-dependent FMN reductase RU84_17430 PF00291 Pyridoxal-phosphate dependent enzyme RU84_17465 PF00440 Bacterial regulatory proteins, tetR family RU84_17490 PF01327 Polypeptide deformylase RU84_17500 PF17782 DprA winged helix domain RU84_17500 PF02481 DNA recombination-mediator protein A RU84_17505 PF01300 Telomere recombination RU84_17510 PF00892 EamA-like transporter family RU84_17515 PF00440 Bacterial regulatory proteins, tetR family RU84_17520 PF07690 Major Facilitator Superfamily RU84_17530 PF00255 Glutathione peroxidase RU84_17540 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain RU84_17545 PF02874 ATP synthase alpha/beta family, beta-barrel domain RU84_17545 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain RU84_17550 PF00231 ATP synthase RU84_17555 PF02874 ATP synthase alpha/beta family, beta-barrel domain RU84_17555 PF00306 ATP synthase alpha/beta chain, C terminal domain RU84_17555 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain RU84_17560 PF00213 ATP synthase delta (OSCP) subunit RU84_17565 PF00430 ATP synthase B/B' CF(0) RU84_17570 PF00137 ATP synthase subunit C RU84_17575 PF00119 ATP synthase A chain RU84_17595 PF00005 ABC transporter RU84_17600 PF00950 ABC 3 transport family RU84_17605 PF01810 LysE type translocator RU84_17610 PF04261 Dyp-type peroxidase family RU84_17615 PF03949 Malic enzyme, NAD binding domain RU84_17615 PF00390 Malic enzyme, N-terminal domain RU84_17620 PF05746 DALR anticodon binding domain RU84_17620 PF00750 tRNA synthetases class I (R) RU84_17620 PF03485 Arginyl tRNA synthetase N terminal domain RU84_17640 PF02678 Pirin RU84_17640 PF05726 Pirin C-terminal cupin domain RU84_17650 PF03551 Transcriptional regulator PadR-like family RU84_17660 PF02540 NAD synthase RU84_17660 PF00958 GMP synthase C terminal domain RU84_17660 PF00117 Glutamine amidotransferase class-I RU84_17665 PF04286 Protein of unknown function (DUF445) RU84_17670 PF07681 DoxX RU84_17675 PF09335 SNARE associated Golgi protein RU84_17690 PF13614 AAA domain RU84_17700 PF01722 BolA-like protein RU84_17715 PF01648 4'-phosphopantetheinyl transferase superfamily RU84_17720 PF16363 GDP-mannose 4,6 dehydratase RU84_17735 PF00668 Condensation domain RU84_17735 PF13193 AMP-binding enzyme C-terminal domain RU84_17735 PF00550 Phosphopantetheine attachment site RU84_17735 PF00501 AMP-binding enzyme RU84_17735 PF00975 Thioesterase domain RU84_17740 PF14765 Polyketide synthase dehydratase RU84_17740 PF16197 Ketoacyl-synthetase C-terminal extension RU84_17740 PF00550 Phosphopantetheine attachment site RU84_17740 PF00109 Beta-ketoacyl synthase, N-terminal domain RU84_17740 PF08242 Methyltransferase domain RU84_17740 PF02801 Beta-ketoacyl synthase, C-terminal domain RU84_17740 PF00975 Thioesterase domain RU84_17745 PF02771 Acyl-CoA dehydrogenase, N-terminal domain RU84_17745 PF02770 Acyl-CoA dehydrogenase, middle domain RU84_17745 PF00441 Acyl-CoA dehydrogenase, C-terminal domain RU84_17750 PF00501 AMP-binding enzyme RU84_17755 PF03472 Autoinducer binding domain RU84_17755 PF00196 Bacterial regulatory proteins, luxR family RU84_17765 PF00765 Autoinducer synthase RU84_17770 PF00083 Sugar (and other) transporter RU84_17770 PF07690 Major Facilitator Superfamily RU84_17775 PF00378 Enoyl-CoA hydratase/isomerase RU84_17780 PF00378 Enoyl-CoA hydratase/isomerase RU84_17785 PF02770 Acyl-CoA dehydrogenase, middle domain RU84_17785 PF02771 Acyl-CoA dehydrogenase, N-terminal domain RU84_17785 PF00441 Acyl-CoA dehydrogenase, C-terminal domain RU84_17790 PF00501 AMP-binding enzyme RU84_17790 PF13193 AMP-binding enzyme C-terminal domain RU84_17795 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase RU84_17795 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase RU84_17800 PF00171 Aldehyde dehydrogenase family RU84_17810 PF00324 Amino acid permease RU84_17815 PF00324 Amino acid permease RU84_17820 PF01042 Endoribonuclease L-PSP RU84_17825 PF01168 Alanine racemase, N-terminal domain RU84_17825 PF00842 Alanine racemase, C-terminal domain RU84_17830 PF01266 FAD dependent oxidoreductase RU84_17835 PF01037 Lrp/AsnC ligand binding domain RU84_17845 PF00593 TonB dependent receptor RU84_17845 PF07715 TonB-dependent Receptor Plug Domain RU84_17860 PF00849 RNA pseudouridylate synthase RU84_17875 PF00109 Beta-ketoacyl synthase, N-terminal domain RU84_17875 PF02801 Beta-ketoacyl synthase, C-terminal domain RU84_17890 PF00293 NUDIX domain RU84_17905 PF00330 Aconitase family (aconitate hydratase) RU84_17905 PF00694 Aconitase C-terminal domain RU84_17910 PF00285 Citrate synthase, C-terminal domain RU84_17920 PF07729 FCD domain RU84_17920 PF00392 Bacterial regulatory proteins, gntR family RU84_17925 PF00155 Aminotransferase class I and II RU84_17930 PF01565 FAD binding domain RU84_17930 PF09330 D-lactate dehydrogenase, membrane binding RU84_17935 PF01070 FMN-dependent dehydrogenase RU84_17940 PF00392 Bacterial regulatory proteins, gntR family RU84_17940 PF07729 FCD domain RU84_17945 PF02652 L-lactate permease RU84_17950 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I RU84_17950 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III RU84_17950 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain RU84_17950 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II RU84_17955 PF16363 GDP-mannose 4,6 dehydratase RU84_17960 PF00342 Phosphoglucose isomerase RU84_17965 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain RU84_17965 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain RU84_17965 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain RU84_17970 PF00483 Nucleotidyl transferase RU84_17975 PF02397 Bacterial sugar transferase RU84_17980 PF00535 Glycosyl transferase family 2 RU84_17985 PF00534 Glycosyl transferases group 1 RU84_18000 PF01943 Polysaccharide biosynthesis protein RU84_18005 PF08666 SAF domain RU84_18005 PF03102 NeuB family RU84_18020 PF02348 Cytidylyltransferase RU84_18025 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family RU84_18030 PF02719 Polysaccharide biosynthesis protein RU84_18035 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain RU84_18035 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain RU84_18035 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain RU84_18040 PF18412 Outer-membrane lipoprotein Wza C-terminal domain RU84_18040 PF02563 Polysaccharide biosynthesis/export protein RU84_18040 PF10531 SLBB domain RU84_18045 PF01451 Low molecular weight phosphotyrosine protein phosphatase RU84_18050 PF13614 AAA domain RU84_18050 PF02706 Chain length determinant protein RU84_18050 PF13807 G-rich domain on putative tyrosine kinase RU84_18055 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase RU84_18055 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase RU84_18060 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase RU84_18060 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase RU84_18065 PF03023 Lipid II flippase MurJ RU84_18070 PF01510 N-acetylmuramoyl-L-alanine amidase RU84_18075 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain RU84_18075 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain RU84_18085 PF04185 Phosphoesterase family RU84_18085 PF05506 Domain of unknown function (DUF756) RU84_18090 PF03725 3' exoribonuclease family, domain 2 RU84_18090 PF01138 3' exoribonuclease family, domain 1 RU84_18095 PF00487 Fatty acid desaturase RU84_18100 PF00175 Oxidoreductase NAD-binding domain RU84_18105 PF00440 Bacterial regulatory proteins, tetR family RU84_18110 PF08360 QacR-like protein, C-terminal region RU84_18110 PF00440 Bacterial regulatory proteins, tetR family RU84_18115 PF01323 DSBA-like thioredoxin domain RU84_18125 PF13419 Haloacid dehalogenase-like hydrolase RU84_18130 PF00106 short chain dehydrogenase RU84_18145 PF00583 Acetyltransferase (GNAT) family RU84_18145 PF00696 Amino acid kinase family RU84_18150 PF09084 NMT1/THI5 like RU84_18155 PF09084 NMT1/THI5 like RU84_18160 PF00296 Luciferase-like monooxygenase RU84_18165 PF00528 Binding-protein-dependent transport system inner membrane component RU84_18170 PF00005 ABC transporter RU84_18175 PF00440 Bacterial regulatory proteins, tetR family RU84_18175 PF08362 YcdC-like protein, C-terminal region RU84_18180 PF01048 Phosphorylase superfamily RU84_18190 PF01687 Riboflavin kinase RU84_18190 PF06574 FAD synthetase RU84_18195 PF08264 Anticodon-binding domain of tRNA RU84_18195 PF00133 tRNA synthetases class I (I, L, M and V) RU84_18195 PF06827 Zinc finger found in FPG and IleRS RU84_18200 PF01252 Signal peptidase (SPase) II RU84_18205 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase RU84_18245 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD RU84_18250 PF07859 alpha/beta hydrolase fold RU84_18270 PF03466 LysR substrate binding domain RU84_18270 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RU84_18275 PF01025 GrpE RU84_18280 PF00012 Hsp70 protein RU84_18300 PF13406 Transglycosylase SLT domain RU84_18305 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain RU84_18305 PF02222 ATP-grasp domain RU84_18310 PF00731 AIR carboxylase RU84_18325 PF02875 Mur ligase family, glutamate ligase domain RU84_18325 PF08245 Mur ligase middle domain RU84_18325 PF01225 Mur ligase family, catalytic domain RU84_18335 PF01569 PAP2 superfamily RU84_18340 PF03741 Integral membrane protein TerC family RU84_18350 PF03738 Glutathionylspermidine synthase preATP-grasp RU84_18355 PF00355 Rieske [2Fe-2S] domain RU84_18360 PF01979 Amidohydrolase family RU84_18370 PF00156 Phosphoribosyl transferase domain RU84_18380 PF10411 Disulfide bond isomerase protein N-terminus RU84_18380 PF13098 Thioredoxin-like domain RU84_18385 PF01545 Cation efflux family RU84_18385 PF16916 Dimerisation domain of Zinc Transporter RU84_18390 PF02583 Metal-sensitive transcriptional repressor RU84_18395 PF01926 50S ribosome-binding GTPase RU84_18395 PF12631 MnmE helical domain RU84_18395 PF10396 GTP-binding protein TrmE N-terminus RU84_18400 PF02096 60Kd inner membrane protein RU84_18400 PF14849 YidC periplasmic domain RU84_18405 PF01809 Putative membrane protein insertion efficiency factor RU84_18410 PF00825 Ribonuclease P RU84_18415 PF00468 Ribosomal protein L34 RU84_18450 PF00625 Guanylate kinase RU84_18465 PF07015 VirC1 protein RU84_18475 PF00589 Phage integrase family RU84_18475 PF02899 Phage integrase, N-terminal SAM-like domain RU84_18510 PF07733 Bacterial DNA polymerase III alpha NTPase domain RU84_18510 PF14579 Helix-hairpin-helix motif RU84_18510 PF17657 Bacterial DNA polymerase III alpha subunit finger domain RU84_18510 PF02811 PHP domain RU84_18520 PF07733 Bacterial DNA polymerase III alpha NTPase domain RU84_18520 PF17657 Bacterial DNA polymerase III alpha subunit finger domain RU84_18520 PF14579 Helix-hairpin-helix motif RU84_18520 PF02811 PHP domain RU84_18535 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain RU84_18535 PF00476 DNA polymerase family A RU84_18535 PF01367 5'-3' exonuclease, C-terminal SAM fold RU84_18535 PF01612 3'-5' exonuclease RU84_18540 PF00154 recA bacterial DNA recombination protein RU84_18540 PF03161 LAGLIDADG DNA endonuclease family RU84_18565 PF02463 RecF/RecN/SMC N terminal domain RU84_18565 PF06470 SMC proteins Flexible Hinge Domain RU84_18585 PF03477 ATP cone domain RU84_18585 PF02867 Ribonucleotide reductase, barrel domain RU84_18585 PF00317 Ribonucleotide reductase, all-alpha domain RU84_18590 PF00268 Ribonucleotide reductase, small chain RU84_18620 PF13610 DDE domain RU84_18630 PF08019 Phosphoethanolamine transferase EptA/EptB RU84_18630 PF00884 Sulfatase RU84_18645 PF00929 Exonuclease RU84_18685 PF13737 Transposase DDE domain RU84_18690 PF16884 N-terminal domain of oxidoreductase RU84_18690 PF00107 Zinc-binding dehydrogenase RU84_18700 PF00440 Bacterial regulatory proteins, tetR family RU84_18700 PF16925 Tetracyclin repressor-like, C-terminal domain RU84_18710 PF00724 NADH:flavin oxidoreductase / NADH oxidase family RU84_18720 PF00465 Iron-containing alcohol dehydrogenase RU84_18730 PF00756 Putative esterase RU84_18735 PF08240 Alcohol dehydrogenase GroES-like domain RU84_18735 PF00107 Zinc-binding dehydrogenase RU84_18740 PF02583 Metal-sensitive transcriptional repressor RU84_18745 PF13276 HTH-like domain RU84_18745 PF13333 Integrase core domain RU84_18745 PF00665 Integrase core domain RU84_18760 PF13823 Alcohol dehydrogenase GroES-associated RU84_18760 PF08240 Alcohol dehydrogenase GroES-like domain RU84_18760 PF00107 Zinc-binding dehydrogenase RU84_18825 PF04650 YSIRK type signal peptide RU84_18825 PF01476 LysM domain RU84_18825 PF03373 Octapeptide repeat RU84_18825 PF02216 B domain RU84_18825 PF00746 LPXTG cell wall anchor motif RU84_18840 PF02559 CarD-like/TRCF domain RU84_18840 PF00271 Helicase conserved C-terminal domain RU84_18840 PF03461 TRCF domain RU84_18840 PF17757 UvrB interaction domain RU84_18840 PF00270 DEAD/DEAH box helicase RU84_18860 PF09383 NIL domain RU84_18860 PF00005 ABC transporter RU84_19040 PF01807 CHC2 zinc finger RU84_19040 PF08275 DNA primase catalytic core, N-terminal domain RU84_19040 PF10410 DnaB-helicase binding domain of primase RU84_19045 PF00753 Metallo-beta-lactamase superfamily RU84_19055 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase RU84_19060 PF01408 Oxidoreductase family, NAD-binding Rossmann fold RU84_19070 PF00166 Chaperonin 10 Kd subunit RU84_19075 PF00118 TCP-1/cpn60 chaperonin family RU84_19100 PF00239 Resolvase, N terminal domain RU84_19100 PF02796 Helix-turn-helix domain of resolvase RU84_19120 PF00565 Staphylococcal nuclease homologue RU84_19145 PF10145 Phage-related minor tail protein RU84_19145 PF01464 Transglycosylase SLT domain RU84_19145 PF01551 Peptidase family M23 RU84_19160 PF10145 Phage-related minor tail protein RU84_19160 PF01464 Transglycosylase SLT domain RU84_19160 PF01551 Peptidase family M23 RU84_19175 PF00437 Type II/IV secretion system protein RU84_19180 PF03743 Bacterial conjugation TrbI-like protein RU84_19220 PF13614 AAA domain RU84_19285 PF17841 BID domain of Bartonella effector protein (Bep) RU84_19285 PF03389 MobA/MobL family RU84_19285 PF01443 Viral (Superfamily 1) RNA helicase RU84_19315 PF01636 Phosphotransferase enzyme family RU84_19335 PF00582 Universal stress protein family RU84_19340 PF01740 STAS domain RU84_19340 PF00916 Sulfate permease family RU84_19345 PF05973 Phage derived protein Gp49-like (DUF891) RU84_19380 PF01051 Initiator Replication protein