RU84_00065	PWY-7883	RU84_00065
RU84_00135	PWY-5101	L-isoleucine biosynthesis II
RU84_00135	PWY-5103	L-isoleucine biosynthesis III
RU84_00135	PWY-5104	L-isoleucine biosynthesis IV
RU84_00135	PWY-7111	pyruvate fermentation to isobutanol (engineered)
RU84_00160	PWY-1622	formaldehyde assimilation I (serine pathway)
RU84_00160	PWY-241	C4 photosynthetic carbon assimilation cycle, NADP-ME type
RU84_00160	PWY-5913	TCA cycle VI (obligate autotrophs)
RU84_00160	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
RU84_00160	PWY-6146	<i>Methanobacterium thermoautotrophicum</i> biosynthetic metabolism
RU84_00160	PWY-6549	L-glutamine biosynthesis III
RU84_00160	PWY-7115	C4 photosynthetic carbon assimilation cycle, NAD-ME type
RU84_00160	PWY-7117	C4 photosynthetic carbon assimilation cycle, PEPCK type
RU84_00160	PWY-7124	ethylene biosynthesis V (engineered)
RU84_00195	PWY-2941	L-lysine biosynthesis II
RU84_00195	PWY-2942	L-lysine biosynthesis III
RU84_00195	PWY-5097	L-lysine biosynthesis VI
RU84_00295	PWY-6123	inosine-5'-phosphate biosynthesis I
RU84_00295	PWY-6124	inosine-5'-phosphate biosynthesis II
RU84_00295	PWY-7234	inosine-5'-phosphate biosynthesis III
RU84_00305	PWY-2941	L-lysine biosynthesis II
RU84_00305	PWY-2942	L-lysine biosynthesis III
RU84_00305	PWY-5097	L-lysine biosynthesis VI
RU84_00360	PWY-6470	peptidoglycan biosynthesis V (&beta;-lactam resistance)
RU84_00385	PWY-5028	L-histidine degradation II
RU84_00385	PWY-5030	L-histidine degradation III
RU84_00390	PWY-5028	L-histidine degradation II
RU84_00390	PWY-5030	L-histidine degradation III
RU84_00400	PWY-5028	L-histidine degradation II
RU84_00400	PWY-5030	L-histidine degradation III
RU84_00420	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
RU84_00420	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
RU84_00425	PWY-6749	CMP-legionaminate biosynthesis I
RU84_00430	PWY-5514	UDP-<i>N</i>-acetyl-D-galactosamine biosynthesis II
RU84_00435	PWY-5269	cardiolipin biosynthesis II
RU84_00435	PWY-5668	cardiolipin biosynthesis I
RU84_00435	PWY-7817	RU84_00435
RU84_00440	PWY-6893	thiamin diphosphate biosynthesis II (Bacillus)
RU84_00440	PWY-6894	thiamin diphosphate biosynthesis I (E. coli)
RU84_00440	PWY-6896	thiamin salvage I
RU84_00440	PWY-6897	thiamin salvage II
RU84_00450	PWY-6167	flavin biosynthesis II (archaea)
RU84_00450	PWY-6168	flavin biosynthesis III (fungi)
RU84_00455	PWY-6167	flavin biosynthesis II (archaea)
RU84_00455	PWY-6168	flavin biosynthesis III (fungi)
RU84_00455	PWY-7539	6-hydroxymethyl-dihydropterin diphosphate biosynthesis III (Chlamydia)
RU84_00455	PWY-7991	RU84_00455
RU84_00485	PWY-5381	pyridine nucleotide cycling (plants)
RU84_00490	PWY-5350	thiosulfate disproportionation III (rhodanese)
RU84_00490	PWY-7927	RU84_00490
RU84_00495	PWY-5669	phosphatidylethanolamine biosynthesis I
RU84_00565	PWY-6840	homoglutathione biosynthesis
RU84_00565	PWY-7255	ergothioneine biosynthesis I (bacteria)
RU84_00620	PWY-5694	allantoin degradation to glyoxylate I
RU84_00620	PWY-5705	allantoin degradation to glyoxylate III
RU84_00625	PWY-5697	allantoin degradation to ureidoglycolate I (urea producing)
RU84_00645	PWY-5691	urate degradation to allantoin I
RU84_00645	PWY-7394	urate degradation to allantoin II
RU84_00645	PWY-7849	RU84_00645
RU84_00650	PWY-5691	urate degradation to allantoin I
RU84_00650	PWY-7394	urate degradation to allantoin II
RU84_00650	PWY-7849	RU84_00650
RU84_00705	PWY-5686	UMP biosynthesis
RU84_00705	PWY-7790	RU84_00705
RU84_00705	PWY-7791	RU84_00705
RU84_00725	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
RU84_00725	PWY-6385	peptidoglycan biosynthesis III (mycobacteria)
RU84_00725	PWY-6470	peptidoglycan biosynthesis V (&beta;-lactam resistance)
RU84_00725	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
RU84_00730	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
RU84_00730	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
RU84_00730	PWY-7953	RU84_00730
RU84_00735	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
RU84_00735	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
RU84_00735	PWY-7953	RU84_00735
RU84_00770	PWY-6891	thiazole biosynthesis II (Bacillus)
RU84_00770	PWY-6892	thiazole biosynthesis I (E. coli)
RU84_00770	PWY-7560	methylerythritol phosphate pathway II
RU84_00805	PWY-5695	urate biosynthesis/inosine 5'-phosphate degradation
RU84_00805	PWY-6596	adenosine nucleotides degradation I
RU84_00805	PWY-7221	guanosine ribonucleotides <i>de novo</i> biosynthesis
RU84_00810	PWY-6749	CMP-legionaminate biosynthesis I
RU84_00815	PWY-7204	pyridoxal 5'-phosphate salvage II (plants)
RU84_00815	PWY-7282	4-amino-2-methyl-5-phosphomethylpyrimidine biosynthesis (yeast)
RU84_00820	PWY-7805	RU84_00820
RU84_00820	PWY-7807	RU84_00820
RU84_00845	PWY-7675	Kdo transfer to lipid IV<sub>A</sub> II
RU84_00865	PWY-5108	L-isoleucine biosynthesis V
RU84_00865	PWY-5132	humulone biosynthesis
RU84_00865	PWY-5133	cohumulone biosynthesis
RU84_00865	PWY-6672	<i>cis</i>-genanyl-CoA degradation
RU84_00865	PWY-7118	chitin degradation to ethanol
RU84_00865	PWY-7857	RU84_00865
RU84_00880	PWY-6059	dimethyl sulfide degradation II (oxidation)
RU84_00960	PWY-6899	base-degraded thiamin salvage
RU84_00960	PWY-7356	thiamin salvage IV (yeast)
RU84_01040	PWY-1801	formaldehyde oxidation II (glutathione-dependent)
RU84_01175	PWY-702	L-methionine biosynthesis II
RU84_01265	PWY-241	C4 photosynthetic carbon assimilation cycle, NADP-ME type
RU84_01265	PWY-5743	3-hydroxypropanoate cycle
RU84_01265	PWY-5744	glyoxylate assimilation
RU84_01265	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
RU84_01265	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
RU84_01265	PWY-7115	C4 photosynthetic carbon assimilation cycle, NAD-ME type
RU84_01265	PWY-7117	C4 photosynthetic carbon assimilation cycle, PEPCK type
RU84_01305	PWY-6825	phosphatidylcholine biosynthesis V
RU84_01375	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
RU84_01400	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
RU84_01400	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
RU84_01410	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
RU84_01410	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
RU84_01410	PWY-7953	RU84_01410
RU84_01415	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
RU84_01415	PWY-6470	peptidoglycan biosynthesis V (&beta;-lactam resistance)
RU84_01415	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
RU84_01430	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
RU84_01430	PWY-6385	peptidoglycan biosynthesis III (mycobacteria)
RU84_01430	PWY-6470	peptidoglycan biosynthesis V (&beta;-lactam resistance)
RU84_01430	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
RU84_01460	PWY-6163	chorismate biosynthesis from 3-dehydroquinate
RU84_01465	PWY-6164	3-dehydroquinate biosynthesis I
RU84_01545	PWY-7221	guanosine ribonucleotides <i>de novo</i> biosynthesis
RU84_01550	PWY-7560	methylerythritol phosphate pathway II
RU84_01600	PWY-6829	tRNA methylation (yeast)
RU84_01600	PWY-7285	methylwyosine biosynthesis
RU84_01600	PWY-7286	7-(3-amino-3-carboxypropyl)-wyosine biosynthesis
RU84_01685	PWY-6854	ethylene biosynthesis III (microbes)
RU84_01860	PWY-6163	chorismate biosynthesis from 3-dehydroquinate
RU84_01865	PWY-7159	chlorophyllide <i>a</i> biosynthesis III (aerobic, light independent)
RU84_01870	PWY-6168	flavin biosynthesis III (fungi)
RU84_01870	PWY-7539	6-hydroxymethyl-dihydropterin diphosphate biosynthesis III (Chlamydia)
RU84_01870	PWY-7991	RU84_01870
RU84_01875	PWY-6891	thiazole biosynthesis II (Bacillus)
RU84_01875	PWY-6892	thiazole biosynthesis I (E. coli)
RU84_01875	PWY-7560	methylerythritol phosphate pathway II
RU84_01955	PWY-5667	CDP-diacylglycerol biosynthesis I
RU84_01955	PWY-6453	stigma estolide biosynthesis
RU84_01955	PWY-7411	superpathway of phosphatidate biosynthesis (yeast)
RU84_01955	PWY-7587	oleate biosynthesis III (cyanobacteria)
RU84_02260	PWY-7731	RU84_02260
RU84_02310	PWY-1622	formaldehyde assimilation I (serine pathway)
RU84_02310	PWY-5392	reductive TCA cycle II
RU84_02310	PWY-561	superpathway of glyoxylate cycle and fatty acid degradation
RU84_02310	PWY-5690	TCA cycle II (plants and fungi)
RU84_02310	PWY-5913	TCA cycle VI (obligate autotrophs)
RU84_02310	PWY-6728	methylaspartate cycle
RU84_02310	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
RU84_02310	PWY-7115	C4 photosynthetic carbon assimilation cycle, NAD-ME type
RU84_02310	PWY-7383	anaerobic energy metabolism (invertebrates, cytosol)
RU84_02335	PWY-5669	phosphatidylethanolamine biosynthesis I
RU84_02400	PWY-4381	fatty acid biosynthesis initiation I
RU84_02400	PWY-5743	3-hydroxypropanoate cycle
RU84_02400	PWY-5744	glyoxylate assimilation
RU84_02400	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
RU84_02400	PWY-6722	candicidin biosynthesis
RU84_02625	PWY-7892	RU84_02625
RU84_02660	PWY-7851	RU84_02660
RU84_02680	PWY-6700	queuosine biosynthesis
RU84_02700	PWY-6700	queuosine biosynthesis
RU84_02930	PWY-5057	L-valine degradation II
RU84_02930	PWY-5076	L-leucine degradation III
RU84_02930	PWY-5078	L-isoleucine degradation II
RU84_02930	PWY-5101	L-isoleucine biosynthesis II
RU84_02930	PWY-5103	L-isoleucine biosynthesis III
RU84_02930	PWY-5104	L-isoleucine biosynthesis IV
RU84_02930	PWY-5108	L-isoleucine biosynthesis V
RU84_02930	PWY-7767	RU84_02930
RU84_02955	PWY-3221	dTDP-L-rhamnose biosynthesis II
RU84_02955	PWY-6808	dTDP-D-forosamine biosynthesis
RU84_02955	PWY-6942	dTDP-D-desosamine biosynthesis
RU84_02955	PWY-6953	dTDP-3-acetamido-3,6-dideoxy-&alpha;-D-galactose biosynthesis
RU84_02955	PWY-6973	dTDP-D-olivose, dTDP-D-oliose and dTDP-D-mycarose biosynthesis
RU84_02955	PWY-6974	dTDP-L-olivose biosynthesis
RU84_02955	PWY-6976	dTDP-L-mycarose biosynthesis
RU84_02955	PWY-7104	dTDP-L-megosamine biosynthesis
RU84_02955	PWY-7301	dTDP-&beta;-L-noviose biosynthesis
RU84_02955	PWY-7312	dTDP-D-&beta;-fucofuranose biosynthesis
RU84_02955	PWY-7315	dTDP-<i>N</i>-acetylthomosamine biosynthesis
RU84_02955	PWY-7316	dTDP-<i>N</i>-acetylviosamine biosynthesis
RU84_02955	PWY-7318	dTDP-3-acetamido-3,6-dideoxy-&alpha;-D-glucose biosynthesis
RU84_02955	PWY-7413	dTDP-6-deoxy-&alpha;-D-allose biosynthesis
RU84_02955	PWY-7414	dTDP-&alpha;-D-mycaminose biosynthesis
RU84_02955	PWY-7440	dTDP-&beta;-L-4-<i>epi</i>-vancosamine biosynthesis
RU84_02955	PWY-7657	dTDP-&beta;-L-digitoxose biosynthesis
RU84_02955	PWY-7688	RU84_02955
RU84_02955	PWY-7814	RU84_02955
RU84_02965	PWY-3221	dTDP-L-rhamnose biosynthesis II
RU84_02965	PWY-6808	dTDP-D-forosamine biosynthesis
RU84_02965	PWY-6942	dTDP-D-desosamine biosynthesis
RU84_02965	PWY-6953	dTDP-3-acetamido-3,6-dideoxy-&alpha;-D-galactose biosynthesis
RU84_02965	PWY-6973	dTDP-D-olivose, dTDP-D-oliose and dTDP-D-mycarose biosynthesis
RU84_02965	PWY-6974	dTDP-L-olivose biosynthesis
RU84_02965	PWY-6976	dTDP-L-mycarose biosynthesis
RU84_02965	PWY-7104	dTDP-L-megosamine biosynthesis
RU84_02965	PWY-7301	dTDP-&beta;-L-noviose biosynthesis
RU84_02965	PWY-7312	dTDP-D-&beta;-fucofuranose biosynthesis
RU84_02965	PWY-7315	dTDP-<i>N</i>-acetylthomosamine biosynthesis
RU84_02965	PWY-7316	dTDP-<i>N</i>-acetylviosamine biosynthesis
RU84_02965	PWY-7318	dTDP-3-acetamido-3,6-dideoxy-&alpha;-D-glucose biosynthesis
RU84_02965	PWY-7413	dTDP-6-deoxy-&alpha;-D-allose biosynthesis
RU84_02965	PWY-7414	dTDP-&alpha;-D-mycaminose biosynthesis
RU84_02965	PWY-7440	dTDP-&beta;-L-4-<i>epi</i>-vancosamine biosynthesis
RU84_02965	PWY-7657	dTDP-&beta;-L-digitoxose biosynthesis
RU84_02965	PWY-7688	RU84_02965
RU84_02965	PWY-7814	RU84_02965
RU84_03055	PWY-5987	sorgoleone biosynthesis
RU84_03055	PWY-5996	oleate biosynthesis II (animals and fungi)
RU84_03115	PWY-4381	fatty acid biosynthesis initiation I
RU84_03115	PWY-5743	3-hydroxypropanoate cycle
RU84_03115	PWY-5744	glyoxylate assimilation
RU84_03115	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
RU84_03115	PWY-6722	candicidin biosynthesis
RU84_03120	PWY-2161	folate polyglutamylation
RU84_03185	PWY-1361	benzoyl-CoA degradation I (aerobic)
RU84_03185	PWY-5109	2-methylbutanoate biosynthesis
RU84_03185	PWY-5136	fatty acid &beta;-oxidation II (peroxisome)
RU84_03185	PWY-5138	unsaturated, even numbered fatty acid &beta;-oxidation
RU84_03185	PWY-5177	glutaryl-CoA degradation
RU84_03185	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
RU84_03185	PWY-6435	4-hydroxybenzoate biosynthesis V
RU84_03185	PWY-6583	pyruvate fermentation to butanol I
RU84_03185	PWY-6863	pyruvate fermentation to hexanol
RU84_03185	PWY-6883	pyruvate fermentation to butanol II
RU84_03185	PWY-6944	androstenedione degradation
RU84_03185	PWY-6945	cholesterol degradation to androstenedione I (cholesterol oxidase)
RU84_03185	PWY-6946	cholesterol degradation to androstenedione II (cholesterol dehydrogenase)
RU84_03185	PWY-7007	methyl ketone biosynthesis
RU84_03185	PWY-7046	4-coumarate degradation (anaerobic)
RU84_03185	PWY-7094	fatty acid salvage
RU84_03185	PWY-7216	(R)- and (S)-3-hydroxybutanoate biosynthesis
RU84_03185	PWY-735	jasmonic acid biosynthesis
RU84_03185	PWY-7401	crotonate fermentation (to acetate and cyclohexane carboxylate)
RU84_03185	PWY-7606	docosahexaenoate biosynthesis III (mammals)
RU84_03185	PWY-7654	(8<i>E</i>,10<i>E</i>)-dodeca-8,10-dienol biosynthesis
RU84_03185	PWY-7656	<i>Spodoptera littoralis</i> pheromone biosynthesis
RU84_03185	PWY-7726	RU84_03185
RU84_03185	PWY-7778	RU84_03185
RU84_03185	PWY-7779	RU84_03185
RU84_03215	PWY-6683	sulfate reduction III (assimilatory)
RU84_03555	PWY-5921	glutaminyl-tRNA<sup>gln</sup> biosynthesis via transamidation
RU84_03635	PWY-5785	di-<i>trans</i>,poly-<i>cis</i>-undecaprenyl phosphate biosynthesis
RU84_03840	PWY-6281	L-selenocysteine biosynthesis II (archaea and eukaryotes)
RU84_03845	PWY-5194	siroheme biosynthesis
RU84_03845	PWY-5196	factor 430 biosynthesis
RU84_03845	PWY-7377	cob(II)yrinate <i>a,c</i>-diamide biosynthesis I (early cobalt insertion)
RU84_03880	PWY-6987	lipoate biosynthesis and incorporation III (Bacillus)
RU84_03880	PWY-7382	lipoate biosynthesis and incorporation (pyruvate dehydrogenase and oxoglutarate dehydrogenase, yeast)
RU84_03930	PWY-3781	aerobic respiration I (cytochrome c)
RU84_03930	PWY-4302	aerobic respiration III (alternative oxidase pathway)
RU84_03930	PWY-561	superpathway of glyoxylate cycle and fatty acid degradation
RU84_03930	PWY-5690	TCA cycle II (plants and fungi)
RU84_03930	PWY-6728	methylaspartate cycle
RU84_03930	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
RU84_03930	PWY-7254	TCA cycle VII (acetate-producers)
RU84_03930	PWY-7279	aerobic respiration II (cytochrome c) (yeast)
RU84_03935	PWY-3781	aerobic respiration I (cytochrome c)
RU84_03935	PWY-4302	aerobic respiration III (alternative oxidase pathway)
RU84_03935	PWY-561	superpathway of glyoxylate cycle and fatty acid degradation
RU84_03935	PWY-5690	TCA cycle II (plants and fungi)
RU84_03935	PWY-6728	methylaspartate cycle
RU84_03935	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
RU84_03935	PWY-7254	TCA cycle VII (acetate-producers)
RU84_03935	PWY-7279	aerobic respiration II (cytochrome c) (yeast)
RU84_03940	PWY-5084	2-oxoglutarate decarboxylation to succinyl-CoA
RU84_03945	PWY-5084	2-oxoglutarate decarboxylation to succinyl-CoA
RU84_03950	PWY-5046	2-oxoisovalerate decarboxylation to isobutanoyl-CoA
RU84_03950	PWY-5084	2-oxoglutarate decarboxylation to succinyl-CoA
RU84_03955	PWY-5392	reductive TCA cycle II
RU84_03955	PWY-5537	pyruvate fermentation to acetate V
RU84_03955	PWY-5538	pyruvate fermentation to acetate VI
RU84_03955	PWY-5690	TCA cycle II (plants and fungi)
RU84_03955	PWY-5913	TCA cycle VI (obligate autotrophs)
RU84_03955	PWY-6728	methylaspartate cycle
RU84_03955	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
RU84_03955	PWY-7384	anaerobic energy metabolism (invertebrates, mitochondrial)
RU84_03960	PWY-5392	reductive TCA cycle II
RU84_03960	PWY-5537	pyruvate fermentation to acetate V
RU84_03960	PWY-5538	pyruvate fermentation to acetate VI
RU84_03960	PWY-5690	TCA cycle II (plants and fungi)
RU84_03960	PWY-5913	TCA cycle VI (obligate autotrophs)
RU84_03960	PWY-6728	methylaspartate cycle
RU84_03960	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
RU84_03960	PWY-7384	anaerobic energy metabolism (invertebrates, mitochondrial)
RU84_04035	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
RU84_04035	PWY-5686	UMP biosynthesis
RU84_04035	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
RU84_04035	PWY-7790	RU84_04035
RU84_04035	PWY-7791	RU84_04035
RU84_04040	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
RU84_04040	PWY-5686	UMP biosynthesis
RU84_04040	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
RU84_04040	PWY-7790	RU84_04040
RU84_04040	PWY-7791	RU84_04040
RU84_04070	PWY-6614	tetrahydrofolate biosynthesis
RU84_04105	PWY-1722	formate reduction to 5,10-methylenetetrahydrofolate
RU84_04105	PWY-2201	folate transformations I
RU84_04105	PWY-3841	folate transformations II
RU84_04105	PWY-5030	L-histidine degradation III
RU84_04105	PWY-5497	purine nucleobases degradation II (anaerobic)
RU84_04105	PWY-6613	tetrahydrofolate salvage from 5,10-methenyltetrahydrofolate
RU84_04105	PWY-7909	RU84_04105
RU84_04125	PWY-4261	glycerol degradation I
RU84_04130	PWY-4261	glycerol degradation I
RU84_04130	PWY-6118	glycerol-3-phosphate shuttle
RU84_04130	PWY-6952	glycerophosphodiester degradation
RU84_04135	PWY-7383	anaerobic energy metabolism (invertebrates, cytosol)
RU84_04165	PWY-7039	phosphatidate metabolism, as a signaling molecule
RU84_04165	PWY-7817	RU84_04165
RU84_04225	PWY-2582	brassinosteroid biosynthesis II
RU84_04225	PWY-6945	cholesterol degradation to androstenedione I (cholesterol oxidase)
RU84_04225	PWY-6946	cholesterol degradation to androstenedione II (cholesterol dehydrogenase)
RU84_04225	PWY-6948	sitosterol degradation to androstenedione
RU84_04225	PWY-699	brassinosteroid biosynthesis I
RU84_04225	PWY-7299	progesterone biosynthesis
RU84_04305	PWY-7511	protein ubiquitylation
RU84_04340	PWY-2941	L-lysine biosynthesis II
RU84_04340	PWY-2942	L-lysine biosynthesis III
RU84_04340	PWY-5097	L-lysine biosynthesis VI
RU84_04345	PWY-2941	L-lysine biosynthesis II
RU84_04345	PWY-5097	L-lysine biosynthesis VI
RU84_04475	PWY-6121	5-aminoimidazole ribonucleotide biosynthesis I
RU84_04475	PWY-6613	tetrahydrofolate salvage from 5,10-methenyltetrahydrofolate
RU84_04480	PWY-6121	5-aminoimidazole ribonucleotide biosynthesis I
RU84_04480	PWY-6122	5-aminoimidazole ribonucleotide biosynthesis II
RU84_04480	PWY-6277	superpathway of 5-aminoimidazole ribonucleotide biosynthesis
RU84_04535	PWY-5484	glycolysis II (from fructose 6-phosphate)
RU84_04595	PWY-6121	5-aminoimidazole ribonucleotide biosynthesis I
RU84_04595	PWY-6122	5-aminoimidazole ribonucleotide biosynthesis II
RU84_04595	PWY-6277	superpathway of 5-aminoimidazole ribonucleotide biosynthesis
RU84_04635	PWY-6482	diphthamide biosynthesis (archaea)
RU84_04635	PWY-7546	diphthamide biosynthesis (eukaryotes)
RU84_04645	PWY-6703	preQ<sub>0</sub> biosynthesis
RU84_04650	PWY-6703	preQ<sub>0</sub> biosynthesis
RU84_04695	PWY-6543	4-aminobenzoate biosynthesis
RU84_04705	PWY-6545	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis III
RU84_04705	PWY-7184	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis I
RU84_04705	PWY-7187	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis II
RU84_04705	PWY-7197	pyrimidine deoxyribonucleotide phosphorylation
RU84_04705	PWY-7198	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis IV
RU84_04705	PWY-7210	pyrimidine deoxyribonucleotides biosynthesis from CTP
RU84_04715	PWY-5316	nicotine biosynthesis
RU84_04715	PWY-7342	superpathway of nicotine biosynthesis
RU84_04795	PWY-1801	formaldehyde oxidation II (glutathione-dependent)
RU84_04845	PWY-1042	glycolysis IV (plant cytosol)
RU84_04845	PWY-5484	glycolysis II (from fructose 6-phosphate)
RU84_04845	PWY-6901	superpathway of glucose and xylose degradation
RU84_04845	PWY-7003	glycerol degradation to butanol
RU84_04865	PWY-3341	L-proline biosynthesis III
RU84_04865	PWY-6922	L-<i>N<sup>&delta;</sup></i>-acetylornithine biosynthesis
RU84_04885	PWY-723	alkylnitronates degradation
RU84_04955	PWY-5913	TCA cycle VI (obligate autotrophs)
RU84_04955	PWY-6549	L-glutamine biosynthesis III
RU84_04955	PWY-6728	methylaspartate cycle
RU84_04955	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
RU84_04955	PWY-7124	ethylene biosynthesis V (engineered)
RU84_04955	PWY-7254	TCA cycle VII (acetate-producers)
RU84_04955	PWY-7268	NAD/NADP-NADH/NADPH cytosolic interconversion (yeast)
RU84_04965	PWY-5913	TCA cycle VI (obligate autotrophs)
RU84_04965	PWY-6549	L-glutamine biosynthesis III
RU84_04965	PWY-6728	methylaspartate cycle
RU84_04965	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
RU84_04965	PWY-7124	ethylene biosynthesis V (engineered)
RU84_04965	PWY-7254	TCA cycle VII (acetate-producers)
RU84_04965	PWY-7268	NAD/NADP-NADH/NADPH cytosolic interconversion (yeast)
RU84_05025	PWY-6893	thiamin diphosphate biosynthesis II (Bacillus)
RU84_05025	PWY-6894	thiamin diphosphate biosynthesis I (E. coli)
RU84_05025	PWY-6897	thiamin salvage II
RU84_05025	PWY-6907	thiamin diphosphate biosynthesis III (Staphylococcus)
RU84_05025	PWY-6908	thiamin diphosphate biosynthesis IV (eukaryotes)
RU84_05025	PWY-7356	thiamin salvage IV (yeast)
RU84_05025	PWY-7357	thiamin formation from pyrithiamine and oxythiamine (yeast)
RU84_05030	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
RU84_05085	PWY-6409	pyoverdine I biosynthesis
RU84_05085	PWY-6562	norspermidine biosynthesis
RU84_05085	PWY-761	rhizobactin 1021 biosynthesis
RU84_05085	PWY-7855	RU84_05085
RU84_05085	PWY-7988	RU84_05085
RU84_05150	PWY-6123	inosine-5'-phosphate biosynthesis I
RU84_05150	PWY-6124	inosine-5'-phosphate biosynthesis II
RU84_05150	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
RU84_05150	PWY-7234	inosine-5'-phosphate biosynthesis III
RU84_05160	PWY-7887	RU84_05160
RU84_05160	PWY-7892	RU84_05160
RU84_05175	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
RU84_05175	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
RU84_05190	PWY-5381	pyridine nucleotide cycling (plants)
RU84_05190	PWY-5695	urate biosynthesis/inosine 5'-phosphate degradation
RU84_05190	PWY-6596	adenosine nucleotides degradation I
RU84_05190	PWY-6606	guanosine nucleotides degradation II
RU84_05190	PWY-6607	guanosine nucleotides degradation I
RU84_05190	PWY-6608	guanosine nucleotides degradation III
RU84_05190	PWY-7185	UTP and CTP dephosphorylation I
RU84_05190	PWY-7821	RU84_05190
RU84_05215	PWY-5386	methylglyoxal degradation I
RU84_05280	PWY-6823	molybdenum cofactor biosynthesis
RU84_05365	PWY-6173	histamine biosynthesis
RU84_05390	PWY-6012	acyl carrier protein metabolism I
RU84_05390	PWY-6012-1	acyl carrier protein metabolism II (mammalian)
RU84_05390	PWY-6289	petrobactin biosynthesis
RU84_05395	PWY-5837	1,4-dihydroxy-2-naphthoate biosynthesis I
RU84_05395	PWY-5901	2,3-dihydroxybenzoate biosynthesis
RU84_05395	PWY-6406	salicylate biosynthesis I
RU84_05405	PWY-5531	chlorophyllide <i>a</i> biosynthesis II (anaerobic)
RU84_05405	PWY-7159	chlorophyllide <i>a</i> biosynthesis III (aerobic, light independent)
RU84_05405	PWY-7766	RU84_05405
RU84_05430	PWY-5663	tetrahydrobiopterin biosynthesis I
RU84_05430	PWY-5664	tetrahydrobiopterin biosynthesis II
RU84_05430	PWY-6147	6-hydroxymethyl-dihydropterin diphosphate biosynthesis I
RU84_05430	PWY-6703	preQ<sub>0</sub> biosynthesis
RU84_05430	PWY-6983	tetrahydrobiopterin biosynthesis III
RU84_05430	PWY-7442	drosopterin and aurodrosopterin biosynthesis
RU84_05430	PWY-7852	RU84_05430
RU84_05435	PWY-5497	purine nucleobases degradation II (anaerobic)
RU84_05435	PWY-5695	urate biosynthesis/inosine 5'-phosphate degradation
RU84_05435	PWY-6538	caffeine degradation III (bacteria, via demethylation)
RU84_05435	PWY-6596	adenosine nucleotides degradation I
RU84_05435	PWY-6606	guanosine nucleotides degradation II
RU84_05435	PWY-6607	guanosine nucleotides degradation I
RU84_05435	PWY-6608	guanosine nucleotides degradation III
RU84_05435	PWY-6999	theophylline degradation
RU84_05440	PWY-5497	purine nucleobases degradation II (anaerobic)
RU84_05440	PWY-5695	urate biosynthesis/inosine 5'-phosphate degradation
RU84_05440	PWY-6538	caffeine degradation III (bacteria, via demethylation)
RU84_05440	PWY-6596	adenosine nucleotides degradation I
RU84_05440	PWY-6606	guanosine nucleotides degradation II
RU84_05440	PWY-6607	guanosine nucleotides degradation I
RU84_05440	PWY-6608	guanosine nucleotides degradation III
RU84_05440	PWY-6999	theophylline degradation
RU84_05475	PWY-5958	acridone alkaloid biosynthesis
RU84_05475	PWY-6660	2-heptyl-3-hydroxy-4(1<i>H</i>)-quinolone biosynthesis
RU84_05475	PWY-6661	4-hydroxy-2(1<i>H</i>)-quinolone biosynthesis
RU84_05490	PWY-381	nitrate reduction II (assimilatory)
RU84_05490	PWY-5675	nitrate reduction V (assimilatory)
RU84_05490	PWY-6549	L-glutamine biosynthesis III
RU84_05490	PWY-6963	ammonia assimilation cycle I
RU84_05490	PWY-6964	ammonia assimilation cycle II
RU84_05495	PWY-5755	4-hydroxybenzoate biosynthesis II (microbes)
RU84_05495	PWY-5870	ubiquinol-8 biosynthesis (eukaryotic)
RU84_05495	PWY-6148	tetrahydromethanopterin biosynthesis
RU84_05495	PWY-7742	RU84_05495
RU84_05495	PWY-7745	RU84_05495
RU84_05495	PWY-7929	RU84_05495
RU84_05495	PWY-7934	RU84_05495
RU84_05495	PWY-7935	RU84_05495
RU84_05535	PWY-6854	ethylene biosynthesis III (microbes)
RU84_05555	PWY-1281	sulfoacetaldehyde degradation I
RU84_05555	PWY-241	C4 photosynthetic carbon assimilation cycle, NADP-ME type
RU84_05555	PWY-5482	pyruvate fermentation to acetate II
RU84_05555	PWY-5485	pyruvate fermentation to acetate IV
RU84_05555	PWY-5497	purine nucleobases degradation II (anaerobic)
RU84_05555	PWY-6637	sulfolactate degradation II
RU84_05555	PWY-7117	C4 photosynthetic carbon assimilation cycle, PEPCK type
RU84_05570	PWY-2201	folate transformations I
RU84_05570	PWY-3841	folate transformations II
RU84_05575	PWY-5041	<i>S</i>-adenosyl-L-methionine cycle II
RU84_05590	PWY-7094	fatty acid salvage
RU84_05590	PWY-7654	(8<i>E</i>,10<i>E</i>)-dodeca-8,10-dienol biosynthesis
RU84_05595	PWY-6987	lipoate biosynthesis and incorporation III (Bacillus)
RU84_05595	PWY-7382	lipoate biosynthesis and incorporation (pyruvate dehydrogenase and oxoglutarate dehydrogenase, yeast)
RU84_05625	PWY-7799	RU84_05625
RU84_05625	PWY-7800	RU84_05625
RU84_05675	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
RU84_05675	PWY-6385	peptidoglycan biosynthesis III (mycobacteria)
RU84_05675	PWY-6470	peptidoglycan biosynthesis V (&beta;-lactam resistance)
RU84_05675	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
RU84_05685	PWY-6700	queuosine biosynthesis
RU84_05720	PWY-1622	formaldehyde assimilation I (serine pathway)
RU84_05720	PWY-181	photorespiration
RU84_05720	PWY-2161	folate polyglutamylation
RU84_05720	PWY-2201	folate transformations I
RU84_05720	PWY-3661	glycine betaine degradation I
RU84_05720	PWY-3661-1	glycine betaine degradation II (mammalian)
RU84_05720	PWY-3841	folate transformations II
RU84_05720	PWY-5497	purine nucleobases degradation II (anaerobic)
RU84_05830	PWY-6893	thiamin diphosphate biosynthesis II (Bacillus)
RU84_05830	PWY-6894	thiamin diphosphate biosynthesis I (E. coli)
RU84_05830	PWY-6897	thiamin salvage II
RU84_05830	PWY-6907	thiamin diphosphate biosynthesis III (Staphylococcus)
RU84_05830	PWY-6908	thiamin diphosphate biosynthesis IV (eukaryotes)
RU84_05830	PWY-7356	thiamin salvage IV (yeast)
RU84_05830	PWY-7357	thiamin formation from pyrithiamine and oxythiamine (yeast)
RU84_05840	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
RU84_05840	PWY-6385	peptidoglycan biosynthesis III (mycobacteria)
RU84_05840	PWY-6470	peptidoglycan biosynthesis V (&beta;-lactam resistance)
RU84_05840	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
RU84_05845	PWY-5083	NAD/NADH phosphorylation and dephosphorylation
RU84_05845	PWY-7268	NAD/NADP-NADH/NADPH cytosolic interconversion (yeast)
RU84_05845	PWY-7269	NAD/NADP-NADH/NADPH mitochondrial interconversion (yeast)
RU84_05875	PWY-3461	L-tyrosine biosynthesis II
RU84_05875	PWY-3462	L-phenylalanine biosynthesis II
RU84_05875	PWY-6120	L-tyrosine biosynthesis III
RU84_05875	PWY-6627	salinosporamide A biosynthesis
RU84_05875	PWY-7432	L-phenylalanine biosynthesis III (cytosolic, plants)
RU84_05875	PWY-7626	bacilysin biosynthesis
RU84_05880	PWY-6163	chorismate biosynthesis from 3-dehydroquinate
RU84_05880	PWY-7303	3-dimethylallyl-4-hydroxybenzoate biosynthesis
RU84_05915	PWY-6891	thiazole biosynthesis II (Bacillus)
RU84_05915	PWY-6892	thiazole biosynthesis I (E. coli)
RU84_05960	PWY-5667	CDP-diacylglycerol biosynthesis I
RU84_05960	PWY-5981	CDP-diacylglycerol biosynthesis III
RU84_05960	PWY-7902	RU84_05960
RU84_05980	PWY-5686	UMP biosynthesis
RU84_05990	PWY-6121	5-aminoimidazole ribonucleotide biosynthesis I
RU84_05990	PWY-6122	5-aminoimidazole ribonucleotide biosynthesis II
RU84_05990	PWY-6277	superpathway of 5-aminoimidazole ribonucleotide biosynthesis
RU84_05990	PWY-7282	4-amino-2-methyl-5-phosphomethylpyrimidine biosynthesis (yeast)
RU84_06130	PWY-5642	2,4-dinitrotoluene degradation
RU84_06280	PWY-5913	TCA cycle VI (obligate autotrophs)
RU84_06280	PWY-6318	L-phenylalanine degradation IV (mammalian, via side chain)
RU84_06280	PWY-6638	sulfolactate degradation III
RU84_06280	PWY-6642	(<i>R</i>)-cysteate degradation
RU84_06280	PWY-6643	coenzyme M biosynthesis II
RU84_06280	PWY-7115	C4 photosynthetic carbon assimilation cycle, NAD-ME type
RU84_06280	PWY-7117	C4 photosynthetic carbon assimilation cycle, PEPCK type
RU84_06280	PWY-7383	anaerobic energy metabolism (invertebrates, cytosol)
RU84_06315	PWY-5691	urate degradation to allantoin I
RU84_06315	PWY-7394	urate degradation to allantoin II
RU84_06315	PWY-7849	RU84_06315
RU84_06395	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
RU84_06395	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
RU84_06445	PWY-5386	methylglyoxal degradation I
RU84_06465	PWY-6121	5-aminoimidazole ribonucleotide biosynthesis I
RU84_06465	PWY-6122	5-aminoimidazole ribonucleotide biosynthesis II
RU84_06465	PWY-6277	superpathway of 5-aminoimidazole ribonucleotide biosynthesis
RU84_06470	PWY-6123	inosine-5'-phosphate biosynthesis I
RU84_06470	PWY-6124	inosine-5'-phosphate biosynthesis II
RU84_06470	PWY-7234	inosine-5'-phosphate biosynthesis III
RU84_06525	PWY-7383	anaerobic energy metabolism (invertebrates, cytosol)
RU84_06565	PWY-3781	aerobic respiration I (cytochrome c)
RU84_06565	PWY-4521	arsenite oxidation I (respiratory)
RU84_06565	PWY-6692	Fe(II) oxidation
RU84_06565	PWY-7279	aerobic respiration II (cytochrome c) (yeast)
RU84_06565	PWY-7544	pyruvate to cytochrome <i>bo</i> oxidase electron transfer
RU84_06580	PWY-5484	glycolysis II (from fructose 6-phosphate)
RU84_06580	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
RU84_06685	PWY-6147	6-hydroxymethyl-dihydropterin diphosphate biosynthesis I
RU84_06685	PWY-6148	tetrahydromethanopterin biosynthesis
RU84_06685	PWY-6797	6-hydroxymethyl-dihydropterin diphosphate biosynthesis II (archaea)
RU84_06685	PWY-7539	6-hydroxymethyl-dihydropterin diphosphate biosynthesis III (Chlamydia)
RU84_06690	PWY-6147	6-hydroxymethyl-dihydropterin diphosphate biosynthesis I
RU84_06690	PWY-6148	tetrahydromethanopterin biosynthesis
RU84_06690	PWY-6797	6-hydroxymethyl-dihydropterin diphosphate biosynthesis II (archaea)
RU84_06690	PWY-7539	6-hydroxymethyl-dihydropterin diphosphate biosynthesis III (Chlamydia)
RU84_06690	PWY-7852	RU84_06690
RU84_06690	PWY-7853	RU84_06690
RU84_06720	PWY-381	nitrate reduction II (assimilatory)
RU84_06720	PWY-5675	nitrate reduction V (assimilatory)
RU84_06720	PWY-6549	L-glutamine biosynthesis III
RU84_06720	PWY-6963	ammonia assimilation cycle I
RU84_06720	PWY-6964	ammonia assimilation cycle II
RU84_06755	PWY-5747	2-methylcitrate cycle II
RU84_06830	PWY-2781	<i>cis</i>-zeatin biosynthesis
RU84_06915	PWY-6897	thiamin salvage II
RU84_06915	PWY-7356	thiamin salvage IV (yeast)
RU84_06915	PWY-7357	thiamin formation from pyrithiamine and oxythiamine (yeast)
RU84_06970	PWY-3461	L-tyrosine biosynthesis II
RU84_06970	PWY-3462	L-phenylalanine biosynthesis II
RU84_06970	PWY-6120	L-tyrosine biosynthesis III
RU84_06970	PWY-6627	salinosporamide A biosynthesis
RU84_06970	PWY-7626	bacilysin biosynthesis
RU84_07110	PWY-1861	formaldehyde assimilation II (RuMP Cycle)
RU84_07110	PWY-5723	Rubisco shunt
RU84_07170	PWY-7782	RU84_07170
RU84_07170	PWY-7783	RU84_07170
RU84_07195	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
RU84_07195	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
RU84_07195	PWY-7953	RU84_07195
RU84_07270	PWY-6163	chorismate biosynthesis from 3-dehydroquinate
RU84_07270	PWY-6416	quinate degradation II
RU84_07270	PWY-6707	gallate biosynthesis
RU84_07295	PWY-6683	sulfate reduction III (assimilatory)
RU84_07310	PWY-5964	guanylyl molybdenum cofactor biosynthesis
RU84_07310	PWY-7639	bis(guanylyl molybdenum cofactor) biosynthesis
RU84_07320	PWY-6823	molybdenum cofactor biosynthesis
RU84_07330	PWY-6823	molybdenum cofactor biosynthesis
RU84_07330	PWY-7887	RU84_07330
RU84_07335	PWY-6823	molybdenum cofactor biosynthesis
RU84_07340	PWY-6823	molybdenum cofactor biosynthesis
RU84_07385	PWY-5392	reductive TCA cycle II
RU84_07385	PWY-561	superpathway of glyoxylate cycle and fatty acid degradation
RU84_07385	PWY-5690	TCA cycle II (plants and fungi)
RU84_07385	PWY-5913	TCA cycle VI (obligate autotrophs)
RU84_07385	PWY-6728	methylaspartate cycle
RU84_07385	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
RU84_07385	PWY-7254	TCA cycle VII (acetate-producers)
RU84_07385	PWY-7384	anaerobic energy metabolism (invertebrates, mitochondrial)
RU84_07415	PWY-7560	methylerythritol phosphate pathway II
RU84_07425	PWY-4981	L-proline biosynthesis II (from arginine)
RU84_07425	PWY-4984	urea cycle
RU84_07425	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
RU84_07465	PWY-5667	CDP-diacylglycerol biosynthesis I
RU84_07465	PWY-5981	CDP-diacylglycerol biosynthesis III
RU84_07465	PWY-7817	RU84_07465
RU84_07470	PWY-7560	methylerythritol phosphate pathway II
RU84_07495	PWY-5971	palmitate biosynthesis II (bacteria and plants)
RU84_07495	PWY-5973	<i>cis</i>-vaccenate biosynthesis
RU84_07495	PWY-5989	stearate biosynthesis II (bacteria and plants)
RU84_07495	PWY-5994	palmitate biosynthesis I (animals and fungi)
RU84_07495	PWY-6113	superpathway of mycolate biosynthesis
RU84_07495	PWY-6282	palmitoleate biosynthesis I (from (5Z)-dodec-5-enoate)
RU84_07495	PWY-6519	8-amino-7-oxononanoate biosynthesis I
RU84_07495	PWY-7388	octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast)
RU84_07495	PWY-7663	gondoate biosynthesis (anaerobic)
RU84_07495	PWY-7664	oleate biosynthesis IV (anaerobic)
RU84_07495	PWY-7858	RU84_07495
RU84_07495	PWYG-321	mycolate biosynthesis
RU84_07560	PWY-5651	L-tryptophan degradation to 2-amino-3-carboxymuconate semialdehyde
RU84_07560	PWY-6309	L-tryptophan degradation XI (mammalian, via kynurenine)
RU84_07590	PWY-7165	L-ascorbate biosynthesis VI (engineered pathway)
RU84_07660	PWY-7799	RU84_07660
RU84_07660	PWY-7800	RU84_07660
RU84_07730	PWY-7545	pyruvate to cytochrome <i>bd</i> terminal oxidase electron transfer
RU84_07775	PWY-6803	phosphatidylcholine acyl editing
RU84_07775	PWY-7409	phospholipid remodeling (phosphatidylethanolamine, yeast)
RU84_07775	PWY-7416	phospholipid remodeling (phosphatidylcholine, yeast)
RU84_07775	PWY-7417	phospholipid remodeling (phosphatidate, yeast)
RU84_07775	PWY-7783	RU84_07775
RU84_07795	PWY-1861	formaldehyde assimilation II (RuMP Cycle)
RU84_07795	PWY-5723	Rubisco shunt
RU84_07810	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
RU84_07810	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
RU84_07835	PWY-1269	CMP-3-deoxy-D-<I>manno</I>-octulosonate biosynthesis I
RU84_07835	PWY-6164	3-dehydroquinate biosynthesis I
RU84_07835	PWY-7674	CMP-8-amino-3,8-dideoxy-D-<I>manno</I>-octulosonate biosynthesis
RU84_07880	PWY-7176	UTP and CTP <i>de novo</i> biosynthesis
RU84_07880	PWY-7177	UTP and CTP dephosphorylation II
RU84_07880	PWY-7185	UTP and CTP dephosphorylation I
RU84_07885	PWY-1269	CMP-3-deoxy-D-<I>manno</I>-octulosonate biosynthesis I
RU84_07885	PWY-7674	CMP-8-amino-3,8-dideoxy-D-<I>manno</I>-octulosonate biosynthesis
RU84_07890	PWY-1042	glycolysis IV (plant cytosol)
RU84_07890	PWY-1622	formaldehyde assimilation I (serine pathway)
RU84_07890	PWY-2221	Entner-Doudoroff pathway III (semi-phosphorylative)
RU84_07890	PWY-5484	glycolysis II (from fructose 6-phosphate)
RU84_07890	PWY-5723	Rubisco shunt
RU84_07890	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
RU84_07890	PWY-6886	1-butanol autotrophic biosynthesis
RU84_07890	PWY-6901	superpathway of glucose and xylose degradation
RU84_07890	PWY-7003	glycerol degradation to butanol
RU84_07890	PWY-7124	ethylene biosynthesis V (engineered)
RU84_07890	PWY-7218	photosynthetic 3-hydroxybutanoate biosynthesis (engineered)
RU84_07905	PWY-7560	methylerythritol phosphate pathway II
RU84_07920	PWY-1361	benzoyl-CoA degradation I (aerobic)
RU84_07920	PWY-2361	3-oxoadipate degradation
RU84_07920	PWY-6185	4-methylcatechol degradation (<i>ortho</i> cleavage)
RU84_07925	PWY-6123	inosine-5'-phosphate biosynthesis I
RU84_07925	PWY-6124	inosine-5'-phosphate biosynthesis II
RU84_07925	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
RU84_07925	PWY-7234	inosine-5'-phosphate biosynthesis III
RU84_07930	PWY-6185	4-methylcatechol degradation (<i>ortho</i> cleavage)
RU84_07945	PWY-6041	4-sulfocatechol degradation
RU84_07950	PWY-6041	4-sulfocatechol degradation
RU84_07955	PWY-6163	chorismate biosynthesis from 3-dehydroquinate
RU84_07955	PWY-6416	quinate degradation II
RU84_07955	PWY-6707	gallate biosynthesis
RU84_08040	PWY-5921	glutaminyl-tRNA<sup>gln</sup> biosynthesis via transamidation
RU84_08090	PWY-5751	phenylethanol biosynthesis
RU84_08105	PWY-6185	4-methylcatechol degradation (<i>ortho</i> cleavage)
RU84_08110	PWY-1361	benzoyl-CoA degradation I (aerobic)
RU84_08110	PWY-2361	3-oxoadipate degradation
RU84_08110	PWY-6185	4-methylcatechol degradation (<i>ortho</i> cleavage)
RU84_08130	PWY-6185	4-methylcatechol degradation (<i>ortho</i> cleavage)
RU84_08155	PWY-5101	L-isoleucine biosynthesis II
RU84_08155	PWY-5103	L-isoleucine biosynthesis III
RU84_08155	PWY-5104	L-isoleucine biosynthesis IV
RU84_08155	PWY-7111	pyruvate fermentation to isobutanol (engineered)
RU84_08175	PWY-5451	acetone degradation I (to methylglyoxal)
RU84_08175	PWY-6588	pyruvate fermentation to acetone
RU84_08175	PWY-6876	isopropanol biosynthesis
RU84_08175	PWY-7466	acetone degradation III (to propane-1,2-diol)
RU84_08395	PWY-5101	L-isoleucine biosynthesis II
RU84_08395	PWY-5103	L-isoleucine biosynthesis III
RU84_08395	PWY-5104	L-isoleucine biosynthesis IV
RU84_08395	PWY-7111	pyruvate fermentation to isobutanol (engineered)
RU84_08470	PWY-5381	pyridine nucleotide cycling (plants)
RU84_08480	PWY-2201	folate transformations I
RU84_08480	PWY-3841	folate transformations II
RU84_08515	PWY-5381	pyridine nucleotide cycling (plants)
RU84_08515	PWY-5695	urate biosynthesis/inosine 5'-phosphate degradation
RU84_08515	PWY-6596	adenosine nucleotides degradation I
RU84_08515	PWY-6606	guanosine nucleotides degradation II
RU84_08515	PWY-6607	guanosine nucleotides degradation I
RU84_08515	PWY-6608	guanosine nucleotides degradation III
RU84_08515	PWY-7185	UTP and CTP dephosphorylation I
RU84_08515	PWY-7821	RU84_08515
RU84_08665	PWY-5392	reductive TCA cycle II
RU84_08665	PWY-561	superpathway of glyoxylate cycle and fatty acid degradation
RU84_08665	PWY-5690	TCA cycle II (plants and fungi)
RU84_08665	PWY-5913	TCA cycle VI (obligate autotrophs)
RU84_08665	PWY-6728	methylaspartate cycle
RU84_08665	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
RU84_08665	PWY-7254	TCA cycle VII (acetate-producers)
RU84_08665	PWY-7384	anaerobic energy metabolism (invertebrates, mitochondrial)
RU84_08780	PWY-6389	(<i>S</i>)-acetoin biosynthesis
RU84_08785	PWY-5046	2-oxoisovalerate decarboxylation to isobutanoyl-CoA
RU84_08785	PWY-5084	2-oxoglutarate decarboxylation to succinyl-CoA
RU84_08805	PWY-6987	lipoate biosynthesis and incorporation III (Bacillus)
RU84_08805	PWY-7382	lipoate biosynthesis and incorporation (pyruvate dehydrogenase and oxoglutarate dehydrogenase, yeast)
RU84_08825	PWY-6163	chorismate biosynthesis from 3-dehydroquinate
RU84_08895	PWY-1801	formaldehyde oxidation II (glutathione-dependent)
RU84_08985	PWY-1269	CMP-3-deoxy-D-<I>manno</I>-octulosonate biosynthesis I
RU84_08985	PWY-6164	3-dehydroquinate biosynthesis I
RU84_08985	PWY-7674	CMP-8-amino-3,8-dideoxy-D-<I>manno</I>-octulosonate biosynthesis
RU84_08990	PWY-5509	adenosylcobalamin biosynthesis from cobyrinate <i>a,c</i>-diamide I
RU84_08990	PWY-6269	adenosylcobalamin salvage from cobinamide II
RU84_08990	PWY-7961	RU84_08990
RU84_08990	PWY-7963	RU84_08990
RU84_08990	PWY-7964	RU84_08990
RU84_08990	PWY-7965	RU84_08990
RU84_08990	PWY-7966	RU84_08990
RU84_08990	PWY-7967	RU84_08990
RU84_08990	PWY-7968	RU84_08990
RU84_08990	PWY-7969	RU84_08990
RU84_08990	PWY-7970	RU84_08990
RU84_08990	PWY-7975	RU84_08990
RU84_09005	PWY-5509	adenosylcobalamin biosynthesis from cobyrinate <i>a,c</i>-diamide I
RU84_09005	PWY-6269	adenosylcobalamin salvage from cobinamide II
RU84_09005	PWY-7964	RU84_09005
RU84_09005	PWY-7965	RU84_09005
RU84_09005	PWY-7966	RU84_09005
RU84_09005	PWY-7967	RU84_09005
RU84_09005	PWY-7968	RU84_09005
RU84_09005	PWY-7969	RU84_09005
RU84_09005	PWY-7970	RU84_09005
RU84_09010	PWY-6269	adenosylcobalamin salvage from cobinamide II
RU84_09010	PWY-7962	RU84_09010
RU84_09010	PWY-7971	RU84_09010
RU84_09010	PWY-7972	RU84_09010
RU84_09145	PWY-7250	[2Fe-2S] iron-sulfur cluster biosynthesis
RU84_09295	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
RU84_09295	PWY-7118	chitin degradation to ethanol
RU84_09295	PWY-7294	xylose degradation IV
RU84_09295	PWY-7295	L-arabinose degradation IV
RU84_09295	PWY-7854	RU84_09295
RU84_09320	PWY-5686	UMP biosynthesis
RU84_09320	PWY-7790	RU84_09320
RU84_09320	PWY-7791	RU84_09320
RU84_09340	PWY-7205	CMP phosphorylation
RU84_09410	PWY-1269	CMP-3-deoxy-D-<I>manno</I>-octulosonate biosynthesis I
RU84_09470	PWY-1042	glycolysis IV (plant cytosol)
RU84_09470	PWY-1861	formaldehyde assimilation II (RuMP Cycle)
RU84_09470	PWY-5484	glycolysis II (from fructose 6-phosphate)
RU84_09470	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
RU84_09470	PWY-7385	1,3-propanediol biosynthesis (engineered)
RU84_09480	PWY-1042	glycolysis IV (plant cytosol)
RU84_09480	PWY-5484	glycolysis II (from fructose 6-phosphate)
RU84_09480	PWY-6886	1-butanol autotrophic biosynthesis
RU84_09480	PWY-6901	superpathway of glucose and xylose degradation
RU84_09480	PWY-7003	glycerol degradation to butanol
RU84_09560	PWY-5737	(5<i>R</i>)-carbapenem carboxylate biosynthesis
RU84_09560	PWY-6853	ethylene biosynthesis II (microbes)
RU84_09560	PWY-6922	L-<i>N<sup>&delta;</sup></i>-acetylornithine biosynthesis
RU84_09600	PWY-1861	formaldehyde assimilation II (RuMP Cycle)
RU84_09600	PWY-5723	Rubisco shunt
RU84_09600	PWY-6891	thiazole biosynthesis II (Bacillus)
RU84_09600	PWY-6892	thiazole biosynthesis I (E. coli)
RU84_09600	PWY-6901	superpathway of glucose and xylose degradation
RU84_09600	PWY-7560	methylerythritol phosphate pathway II
RU84_09605	PWY-5041	<i>S</i>-adenosyl-L-methionine cycle II
RU84_09605	PWY-5912	2'-deoxymugineic acid phytosiderophore biosynthesis
RU84_09645	PWY-6938	NADH repair
RU84_09650	PWY-6700	queuosine biosynthesis
RU84_09655	PWY-7380	biotin biosynthesis from 8-amino-7-oxononanoate II
RU84_09935	PWY-6936	seleno-amino acid biosynthesis
RU84_09935	PWY-7274	D-cycloserine biosynthesis
RU84_09935	PWY-7870	RU84_09935
RU84_09980	PWY-4202	arsenate detoxification I (glutaredoxin)
RU84_09980	PWY-4621	arsenate detoxification II (glutaredoxin)
RU84_10015	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
RU84_10015	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
RU84_10100	PWY-4381	fatty acid biosynthesis initiation I
RU84_10100	PWY-6799	fatty acid biosynthesis (plant mitochondria)
RU84_10100	PWY-7388	octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast)
RU84_10105	PWY-5796	malonate decarboxylase activation
RU84_10110	PWY-6060	malonate degradation II (biotin-dependent)
RU84_10115	PWY-4381	fatty acid biosynthesis initiation I
RU84_10115	PWY-5743	3-hydroxypropanoate cycle
RU84_10115	PWY-5744	glyoxylate assimilation
RU84_10115	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
RU84_10115	PWY-6060	malonate degradation II (biotin-dependent)
RU84_10115	PWY-6722	candicidin biosynthesis
RU84_10125	PWY-5796	malonate decarboxylase activation
RU84_10130	PWY-5794	malonate degradation I (biotin-independent)
RU84_10130	PWY-6060	malonate degradation II (biotin-dependent)
RU84_10180	PWY-4061	glutathione-mediated detoxification I
RU84_10180	PWY-6842	glutathione-mediated detoxification II
RU84_10180	PWY-7112	4-hydroxy-2-nonenal detoxification
RU84_10180	PWY-7533	gliotoxin biosynthesis
RU84_10210	PWY-6936	seleno-amino acid biosynthesis
RU84_10210	PWY-7274	D-cycloserine biosynthesis
RU84_10210	PWY-7870	RU84_10210
RU84_10220	PWY-7250	[2Fe-2S] iron-sulfur cluster biosynthesis
RU84_10400	PWY-4381	fatty acid biosynthesis initiation I
RU84_10400	PWY-5743	3-hydroxypropanoate cycle
RU84_10400	PWY-5744	glyoxylate assimilation
RU84_10400	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
RU84_10400	PWY-6722	candicidin biosynthesis
RU84_10485	PWY-1361	benzoyl-CoA degradation I (aerobic)
RU84_10485	PWY-5109	2-methylbutanoate biosynthesis
RU84_10485	PWY-5136	fatty acid &beta;-oxidation II (peroxisome)
RU84_10485	PWY-5138	unsaturated, even numbered fatty acid &beta;-oxidation
RU84_10485	PWY-5177	glutaryl-CoA degradation
RU84_10485	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
RU84_10485	PWY-6435	4-hydroxybenzoate biosynthesis V
RU84_10485	PWY-6583	pyruvate fermentation to butanol I
RU84_10485	PWY-6863	pyruvate fermentation to hexanol
RU84_10485	PWY-6883	pyruvate fermentation to butanol II
RU84_10485	PWY-6944	androstenedione degradation
RU84_10485	PWY-6945	cholesterol degradation to androstenedione I (cholesterol oxidase)
RU84_10485	PWY-6946	cholesterol degradation to androstenedione II (cholesterol dehydrogenase)
RU84_10485	PWY-7007	methyl ketone biosynthesis
RU84_10485	PWY-7046	4-coumarate degradation (anaerobic)
RU84_10485	PWY-7094	fatty acid salvage
RU84_10485	PWY-7216	(R)- and (S)-3-hydroxybutanoate biosynthesis
RU84_10485	PWY-735	jasmonic acid biosynthesis
RU84_10485	PWY-7401	crotonate fermentation (to acetate and cyclohexane carboxylate)
RU84_10485	PWY-7606	docosahexaenoate biosynthesis III (mammals)
RU84_10485	PWY-7654	(8<i>E</i>,10<i>E</i>)-dodeca-8,10-dienol biosynthesis
RU84_10485	PWY-7656	<i>Spodoptera littoralis</i> pheromone biosynthesis
RU84_10485	PWY-7726	RU84_10485
RU84_10485	PWY-7778	RU84_10485
RU84_10485	PWY-7779	RU84_10485
RU84_10505	PWY-723	alkylnitronates degradation
RU84_10540	PWY-6832	2-aminoethylphosphonate degradation II
RU84_10575	PWY-7383	anaerobic energy metabolism (invertebrates, cytosol)
RU84_10720	PWY-1341	phenylacetate degradation II (anaerobic)
RU84_10720	PWY-6318	L-phenylalanine degradation IV (mammalian, via side chain)
RU84_10720	PWY-7716	RU84_10720
RU84_10725	PWY-1361	benzoyl-CoA degradation I (aerobic)
RU84_10725	PWY-2361	3-oxoadipate degradation
RU84_10725	PWY-6185	4-methylcatechol degradation (<i>ortho</i> cleavage)
RU84_10730	PWY-1361	benzoyl-CoA degradation I (aerobic)
RU84_10730	PWY-5109	2-methylbutanoate biosynthesis
RU84_10730	PWY-5136	fatty acid &beta;-oxidation II (peroxisome)
RU84_10730	PWY-5138	unsaturated, even numbered fatty acid &beta;-oxidation
RU84_10730	PWY-5177	glutaryl-CoA degradation
RU84_10730	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
RU84_10730	PWY-6435	4-hydroxybenzoate biosynthesis V
RU84_10730	PWY-6583	pyruvate fermentation to butanol I
RU84_10730	PWY-6863	pyruvate fermentation to hexanol
RU84_10730	PWY-6883	pyruvate fermentation to butanol II
RU84_10730	PWY-6944	androstenedione degradation
RU84_10730	PWY-6945	cholesterol degradation to androstenedione I (cholesterol oxidase)
RU84_10730	PWY-6946	cholesterol degradation to androstenedione II (cholesterol dehydrogenase)
RU84_10730	PWY-7007	methyl ketone biosynthesis
RU84_10730	PWY-7046	4-coumarate degradation (anaerobic)
RU84_10730	PWY-7094	fatty acid salvage
RU84_10730	PWY-7216	(R)- and (S)-3-hydroxybutanoate biosynthesis
RU84_10730	PWY-735	jasmonic acid biosynthesis
RU84_10730	PWY-7401	crotonate fermentation (to acetate and cyclohexane carboxylate)
RU84_10730	PWY-7606	docosahexaenoate biosynthesis III (mammals)
RU84_10730	PWY-7654	(8<i>E</i>,10<i>E</i>)-dodeca-8,10-dienol biosynthesis
RU84_10730	PWY-7656	<i>Spodoptera littoralis</i> pheromone biosynthesis
RU84_10730	PWY-7726	RU84_10730
RU84_10730	PWY-7778	RU84_10730
RU84_10730	PWY-7779	RU84_10730
RU84_10890	PWY-4041	&gamma;-glutamyl cycle
RU84_10890	PWY-7942	RU84_10890
RU84_10970	PWY-1361	benzoyl-CoA degradation I (aerobic)
RU84_10970	PWY-5109	2-methylbutanoate biosynthesis
RU84_10970	PWY-5136	fatty acid &beta;-oxidation II (peroxisome)
RU84_10970	PWY-5138	unsaturated, even numbered fatty acid &beta;-oxidation
RU84_10970	PWY-5177	glutaryl-CoA degradation
RU84_10970	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
RU84_10970	PWY-6435	4-hydroxybenzoate biosynthesis V
RU84_10970	PWY-6583	pyruvate fermentation to butanol I
RU84_10970	PWY-6863	pyruvate fermentation to hexanol
RU84_10970	PWY-6883	pyruvate fermentation to butanol II
RU84_10970	PWY-6944	androstenedione degradation
RU84_10970	PWY-6945	cholesterol degradation to androstenedione I (cholesterol oxidase)
RU84_10970	PWY-6946	cholesterol degradation to androstenedione II (cholesterol dehydrogenase)
RU84_10970	PWY-7007	methyl ketone biosynthesis
RU84_10970	PWY-7046	4-coumarate degradation (anaerobic)
RU84_10970	PWY-7094	fatty acid salvage
RU84_10970	PWY-7216	(R)- and (S)-3-hydroxybutanoate biosynthesis
RU84_10970	PWY-735	jasmonic acid biosynthesis
RU84_10970	PWY-7401	crotonate fermentation (to acetate and cyclohexane carboxylate)
RU84_10970	PWY-7606	docosahexaenoate biosynthesis III (mammals)
RU84_10970	PWY-7654	(8<i>E</i>,10<i>E</i>)-dodeca-8,10-dienol biosynthesis
RU84_10970	PWY-7656	<i>Spodoptera littoralis</i> pheromone biosynthesis
RU84_10970	PWY-7726	RU84_10970
RU84_10970	PWY-7778	RU84_10970
RU84_10970	PWY-7779	RU84_10970
RU84_11045	PWY-6470	peptidoglycan biosynthesis V (&beta;-lactam resistance)
RU84_11100	PWY-1269	CMP-3-deoxy-D-<I>manno</I>-octulosonate biosynthesis I
RU84_11100	PWY-7674	CMP-8-amino-3,8-dideoxy-D-<I>manno</I>-octulosonate biosynthesis
RU84_11170	PWY-3341	L-proline biosynthesis III
RU84_11170	PWY-4981	L-proline biosynthesis II (from arginine)
RU84_11170	PWY-6344	L-ornithine degradation II (Stickland reaction)
RU84_11245	PWY-1801	formaldehyde oxidation II (glutathione-dependent)
RU84_11270	PWY-5418	phenol degradation I (aerobic)
RU84_11270	PWY-6197	chlorinated phenols degradation
RU84_11290	PWY-5418	phenol degradation I (aerobic)
RU84_11290	PWY-6197	chlorinated phenols degradation
RU84_11345	PWY-4381	fatty acid biosynthesis initiation I
RU84_11420	PWY-5686	UMP biosynthesis
RU84_11420	PWY-7790	RU84_11420
RU84_11420	PWY-7791	RU84_11420
RU84_11490	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
RU84_11505	PWY-1042	glycolysis IV (plant cytosol)
RU84_11505	PWY-5484	glycolysis II (from fructose 6-phosphate)
RU84_11505	PWY-6901	superpathway of glucose and xylose degradation
RU84_11505	PWY-7003	glycerol degradation to butanol
RU84_11515	PWY-2941	L-lysine biosynthesis II
RU84_11515	PWY-2942	L-lysine biosynthesis III
RU84_11515	PWY-5097	L-lysine biosynthesis VI
RU84_11515	PWY-6160	3-dehydroquinate biosynthesis II (archaea)
RU84_11515	PWY-6559	spermidine biosynthesis II
RU84_11515	PWY-6562	norspermidine biosynthesis
RU84_11515	PWY-7153	grixazone biosynthesis
RU84_11515	PWY-7977	RU84_11515
RU84_11540	PWY-6610	adenine and adenosine salvage IV
RU84_11710	PWY-6784	cellulose and hemicellulose degradation (cellulolosome)
RU84_11725	PWY-6486	D-galacturonate degradation II
RU84_11725	PWY-6497	D-galactarate degradation II
RU84_11725	PWY-6499	D-glucarate degradation II
RU84_11725	PWY-6501	D-glucuronate degradation II
RU84_11730	PWY-6499	D-glucarate degradation II
RU84_12080	PWY-4983	L-citrulline-nitric oxide cycle
RU84_12080	PWY-4984	urea cycle
RU84_12080	PWY-5	canavanine biosynthesis
RU84_12080	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
RU84_12080	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
RU84_12090	PWY-5686	UMP biosynthesis
RU84_12090	PWY-7790	RU84_12090
RU84_12090	PWY-7791	RU84_12090
RU84_12150	PWY-5381	pyridine nucleotide cycling (plants)
RU84_12150	PWY-7761	RU84_12150
RU84_12640	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
RU84_12655	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
RU84_12655	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
RU84_12685	PWY-5704	urea degradation II
RU84_12690	PWY-5704	urea degradation II
RU84_12695	PWY-5704	urea degradation II
RU84_12715	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
RU84_12745	PWY-5278	sulfite oxidation III
RU84_12745	PWY-5340	sulfate activation for sulfonation
RU84_12745	PWY-6683	sulfate reduction III (assimilatory)
RU84_12745	PWY-6932	selenate reduction
RU84_12750	PWY-5278	sulfite oxidation III
RU84_12750	PWY-5340	sulfate activation for sulfonation
RU84_12750	PWY-6683	sulfate reduction III (assimilatory)
RU84_12750	PWY-6932	selenate reduction
RU84_12805	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
RU84_12805	PWY-6385	peptidoglycan biosynthesis III (mycobacteria)
RU84_12805	PWY-6470	peptidoglycan biosynthesis V (&beta;-lactam resistance)
RU84_12805	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
RU84_12830	PWY-241	C4 photosynthetic carbon assimilation cycle, NADP-ME type
RU84_12830	PWY-5743	3-hydroxypropanoate cycle
RU84_12830	PWY-5744	glyoxylate assimilation
RU84_12830	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
RU84_12830	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
RU84_12830	PWY-7115	C4 photosynthetic carbon assimilation cycle, NAD-ME type
RU84_12830	PWY-7117	C4 photosynthetic carbon assimilation cycle, PEPCK type
RU84_12890	PWY-2201	folate transformations I
RU84_12890	PWY-3841	folate transformations II
RU84_12890	PWY-7977	RU84_12890
RU84_12900	PWY-6891	thiazole biosynthesis II (Bacillus)
RU84_12900	PWY-6892	thiazole biosynthesis I (E. coli)
RU84_12900	PWY-7560	methylerythritol phosphate pathway II
RU84_12925	PWY-6317	galactose degradation I (Leloir pathway)
RU84_13110	PWY-3722	glycine betaine biosynthesis II (Gram-positive bacteria)
RU84_13110	PWY-7494	choline degradation IV
RU84_13115	PWY-3722	glycine betaine biosynthesis II (Gram-positive bacteria)
RU84_13115	PWY-7494	choline degradation IV
RU84_13120	PWY-7254	TCA cycle VII (acetate-producers)
RU84_13660	PWY-4041	&gamma;-glutamyl cycle
RU84_13660	PWY-4061	glutathione-mediated detoxification I
RU84_13660	PWY-5826	hypoglycin biosynthesis
RU84_13660	PWY-6842	glutathione-mediated detoxification II
RU84_13660	PWY-7112	4-hydroxy-2-nonenal detoxification
RU84_13660	PWY-7559	glutathione degradation (DUG pathway - yeast)
RU84_13680	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
RU84_13680	PWY-5189	tetrapyrrole biosynthesis II (from glycine)
RU84_13720	PWY-7383	anaerobic energy metabolism (invertebrates, cytosol)
RU84_13770	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
RU84_13770	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
RU84_13775	PWY-6749	CMP-legionaminate biosynthesis I
RU84_13845	PWY-7801	RU84_13845
RU84_13850	PWY-7802	RU84_13850
RU84_13860	PWY-6855	chitin degradation I (archaea)
RU84_13860	PWY-6902	chitin degradation II
RU84_13860	PWY-7822	RU84_13860
RU84_13915	PWY-5381	pyridine nucleotide cycling (plants)
RU84_13915	PWY-5653	NAD biosynthesis from 2-amino-3-carboxymuconate semialdehyde
RU84_13915	PWY-7761	RU84_13915
RU84_13980	PWY-7851	RU84_13980
RU84_14350	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
RU84_14365	PWY-7560	methylerythritol phosphate pathway II
RU84_14400	PWY-6308	L-cysteine biosynthesis II (tRNA-dependent)
RU84_14405	PWY-5155	&beta;-alanine biosynthesis III
RU84_14420	PWY-6167	flavin biosynthesis II (archaea)
RU84_14420	PWY-6168	flavin biosynthesis III (fungi)
RU84_14445	PWY-5367	petroselinate biosynthesis
RU84_14445	PWY-5971	palmitate biosynthesis II (bacteria and plants)
RU84_14445	PWY-5973	<i>cis</i>-vaccenate biosynthesis
RU84_14445	PWY-5989	stearate biosynthesis II (bacteria and plants)
RU84_14445	PWY-5994	palmitate biosynthesis I (animals and fungi)
RU84_14445	PWY-6113	superpathway of mycolate biosynthesis
RU84_14445	PWY-6282	palmitoleate biosynthesis I (from (5Z)-dodec-5-enoate)
RU84_14445	PWY-6519	8-amino-7-oxononanoate biosynthesis I
RU84_14445	PWY-7388	octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast)
RU84_14445	PWY-7663	gondoate biosynthesis (anaerobic)
RU84_14445	PWY-7664	oleate biosynthesis IV (anaerobic)
RU84_14445	PWY-7858	RU84_14445
RU84_14445	PWYG-321	mycolate biosynthesis
RU84_14450	PWY-4381	fatty acid biosynthesis initiation I
RU84_14450	PWY-6799	fatty acid biosynthesis (plant mitochondria)
RU84_14450	PWY-7388	octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast)
RU84_14490	PWY-7380	biotin biosynthesis from 8-amino-7-oxononanoate II
RU84_14495	PWY-6519	8-amino-7-oxononanoate biosynthesis I
RU84_14560	PWY-6987	lipoate biosynthesis and incorporation III (Bacillus)
RU84_14560	PWY-7382	lipoate biosynthesis and incorporation (pyruvate dehydrogenase and oxoglutarate dehydrogenase, yeast)
RU84_14565	PWY-3961	phosphopantothenate biosynthesis II
RU84_14720	PWY-7183	pyrimidine nucleobases salvage I
RU84_14815	PWY-6545	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis III
RU84_14815	PWY-7184	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis I
RU84_14815	PWY-7198	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis IV
RU84_14815	PWY-7210	pyrimidine deoxyribonucleotides biosynthesis from CTP
RU84_14815	PWY-7220	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis II
RU84_14815	PWY-7222	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis II
RU84_14815	PWY-7226	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis I
RU84_14815	PWY-7227	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis
RU84_14825	PWY-6545	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis III
RU84_14825	PWY-7184	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis I
RU84_14825	PWY-7198	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis IV
RU84_14825	PWY-7210	pyrimidine deoxyribonucleotides biosynthesis from CTP
RU84_14825	PWY-7220	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis II
RU84_14825	PWY-7222	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis II
RU84_14825	PWY-7226	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis I
RU84_14825	PWY-7227	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis
RU84_14865	PWY-5041	<i>S</i>-adenosyl-L-methionine cycle II
RU84_14865	PWY-6151	<i>S</i>-adenosyl-L-methionine cycle I
RU84_14865	PWY-6936	seleno-amino acid biosynthesis
RU84_14865	PWY-702	L-methionine biosynthesis II
RU84_14960	PWY-6609	adenine and adenosine salvage III
RU84_14960	PWY-6611	adenine and adenosine salvage V
RU84_14960	PWY-7179	purine deoxyribonucleosides degradation I
RU84_14960	PWY-7179-1	purine deoxyribonucleosides degradation
RU84_14985	PWY-5316	nicotine biosynthesis
RU84_14985	PWY-7342	superpathway of nicotine biosynthesis
RU84_14990	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
RU84_15030	PWY-1861	formaldehyde assimilation II (RuMP Cycle)
RU84_15030	PWY-5723	Rubisco shunt
RU84_15040	PWY-1801	formaldehyde oxidation II (glutathione-dependent)
RU84_15110	PWY-5958	acridone alkaloid biosynthesis
RU84_15110	PWY-6660	2-heptyl-3-hydroxy-4(1<i>H</i>)-quinolone biosynthesis
RU84_15110	PWY-6661	4-hydroxy-2(1<i>H</i>)-quinolone biosynthesis
RU84_15130	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
RU84_15130	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
RU84_15130	PWY-7953	RU84_15130
RU84_15240	PWY-3341	L-proline biosynthesis III
RU84_15240	PWY-4981	L-proline biosynthesis II (from arginine)
RU84_15240	PWY-6344	L-ornithine degradation II (Stickland reaction)
RU84_15250	PWY-4381	fatty acid biosynthesis initiation I
RU84_15250	PWY-5743	3-hydroxypropanoate cycle
RU84_15250	PWY-5744	glyoxylate assimilation
RU84_15250	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
RU84_15250	PWY-6722	candicidin biosynthesis
RU84_15265	PWY-7980	RU84_15265
RU84_15365	PWY-6654	phosphopantothenate biosynthesis III
RU84_15370	PWY-6147	6-hydroxymethyl-dihydropterin diphosphate biosynthesis I
RU84_15370	PWY-6148	tetrahydromethanopterin biosynthesis
RU84_15370	PWY-6797	6-hydroxymethyl-dihydropterin diphosphate biosynthesis II (archaea)
RU84_15370	PWY-7539	6-hydroxymethyl-dihydropterin diphosphate biosynthesis III (Chlamydia)
RU84_15370	PWY-7852	RU84_15370
RU84_15370	PWY-7853	RU84_15370
RU84_15410	PWY-6936	seleno-amino acid biosynthesis
RU84_15525	PWY-4202	arsenate detoxification I (glutaredoxin)
RU84_15525	PWY-4621	arsenate detoxification II (glutaredoxin)
RU84_15740	PWY-5103	L-isoleucine biosynthesis III
RU84_15740	PWY-7111	pyruvate fermentation to isobutanol (engineered)
RU84_15745	PWY-5101	L-isoleucine biosynthesis II
RU84_15745	PWY-5103	L-isoleucine biosynthesis III
RU84_15745	PWY-5104	L-isoleucine biosynthesis IV
RU84_15745	PWY-5938	(<i>R</i>)-acetoin biosynthesis I
RU84_15745	PWY-5939	(<i>R</i>)-acetoin biosynthesis II
RU84_15745	PWY-6389	(<i>S</i>)-acetoin biosynthesis
RU84_15745	PWY-7111	pyruvate fermentation to isobutanol (engineered)
RU84_15750	PWY-5101	L-isoleucine biosynthesis II
RU84_15750	PWY-5103	L-isoleucine biosynthesis III
RU84_15750	PWY-5104	L-isoleucine biosynthesis IV
RU84_15750	PWY-5938	(<i>R</i>)-acetoin biosynthesis I
RU84_15750	PWY-5939	(<i>R</i>)-acetoin biosynthesis II
RU84_15750	PWY-6389	(<i>S</i>)-acetoin biosynthesis
RU84_15750	PWY-7111	pyruvate fermentation to isobutanol (engineered)
RU84_15790	PWY-5971	palmitate biosynthesis II (bacteria and plants)
RU84_15790	PWY-5973	<i>cis</i>-vaccenate biosynthesis
RU84_15790	PWY-5989	stearate biosynthesis II (bacteria and plants)
RU84_15790	PWY-6113	superpathway of mycolate biosynthesis
RU84_15790	PWY-6282	palmitoleate biosynthesis I (from (5Z)-dodec-5-enoate)
RU84_15790	PWY-6519	8-amino-7-oxononanoate biosynthesis I
RU84_15790	PWY-7663	gondoate biosynthesis (anaerobic)
RU84_15790	PWY-7664	oleate biosynthesis IV (anaerobic)
RU84_15790	PWY-7858	RU84_15790
RU84_15790	PWYG-321	mycolate biosynthesis
RU84_15825	PWY-6012	acyl carrier protein metabolism I
RU84_15825	PWY-6012-1	acyl carrier protein metabolism II (mammalian)
RU84_15825	PWY-6289	petrobactin biosynthesis
RU84_15870	PWY-6545	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis III
RU84_15870	PWY-7176	UTP and CTP <i>de novo</i> biosynthesis
RU84_15870	PWY-7184	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis I
RU84_15870	PWY-7187	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis II
RU84_15870	PWY-7197	pyrimidine deoxyribonucleotide phosphorylation
RU84_15870	PWY-7198	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis IV
RU84_15870	PWY-7205	CMP phosphorylation
RU84_15870	PWY-7210	pyrimidine deoxyribonucleotides biosynthesis from CTP
RU84_15870	PWY-7220	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis II
RU84_15870	PWY-7221	guanosine ribonucleotides <i>de novo</i> biosynthesis
RU84_15870	PWY-7222	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis II
RU84_15870	PWY-7224	purine deoxyribonucleosides salvage
RU84_15870	PWY-7226	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis I
RU84_15870	PWY-7227	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis
RU84_15895	PWY-6902	chitin degradation II
RU84_15895	PWY-7822	RU84_15895
RU84_15895	PWY-7883	RU84_15895
RU84_15910	PWY-3341	L-proline biosynthesis III
RU84_15910	PWY-6922	L-<i>N<sup>&delta;</sup></i>-acetylornithine biosynthesis
RU84_15920	PWY-5530	sorbitol biosynthesis II
RU84_15920	PWY-6163	chorismate biosynthesis from 3-dehydroquinate
RU84_15930	PWY-2221	Entner-Doudoroff pathway III (semi-phosphorylative)
RU84_15930	PWY-6507	4-deoxy-L-<i>threo</i>-hex-4-enopyranuronate degradation
RU84_15930	PWY-7242	D-fructuronate degradation
RU84_15930	PWY-7310	D-glucosaminate degradation
RU84_15930	PWY-7562	3,6-anhydro-&alpha;-L-galactopyranose degradation
RU84_15935	PWY-5101	L-isoleucine biosynthesis II
RU84_15935	PWY-5103	L-isoleucine biosynthesis III
RU84_15935	PWY-5104	L-isoleucine biosynthesis IV
RU84_15935	PWY-7111	pyruvate fermentation to isobutanol (engineered)
RU84_15940	PWY-5482	pyruvate fermentation to acetate II
RU84_15940	PWY-5485	pyruvate fermentation to acetate IV
RU84_15940	PWY-5497	purine nucleobases degradation II (anaerobic)
RU84_15945	PWY-1281	sulfoacetaldehyde degradation I
RU84_15945	PWY-5482	pyruvate fermentation to acetate II
RU84_15945	PWY-5485	pyruvate fermentation to acetate IV
RU84_15945	PWY-5497	purine nucleobases degradation II (anaerobic)
RU84_15945	PWY-6637	sulfolactate degradation II
RU84_15950	PWY-5392	reductive TCA cycle II
RU84_15950	PWY-561	superpathway of glyoxylate cycle and fatty acid degradation
RU84_15950	PWY-5690	TCA cycle II (plants and fungi)
RU84_15950	PWY-5913	TCA cycle VI (obligate autotrophs)
RU84_15950	PWY-6728	methylaspartate cycle
RU84_15950	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
RU84_15950	PWY-7254	TCA cycle VII (acetate-producers)
RU84_15950	PWY-7384	anaerobic energy metabolism (invertebrates, mitochondrial)
RU84_15990	PWY-6871	3-methylbutanol biosynthesis
RU84_16000	PWY-5344	L-homocysteine biosynthesis
RU84_16065	PWY-3841	folate transformations II
RU84_16065	PWY-7184	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis I
RU84_16065	PWY-7187	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis II
RU84_16065	PWY-7198	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis IV
RU84_16065	PWY-7199	pyrimidine deoxyribonucleosides salvage
RU84_16065	PWY-7210	pyrimidine deoxyribonucleotides biosynthesis from CTP
RU84_16070	PWY-3841	folate transformations II
RU84_16070	PWY-6614	tetrahydrofolate biosynthesis
RU84_16100	PWY-2201	folate transformations I
RU84_16100	PWY-5497	purine nucleobases degradation II (anaerobic)
RU84_16100	PWY-7909	RU84_16100
RU84_16220	PWY-2941	L-lysine biosynthesis II
RU84_16220	PWY-2942	L-lysine biosynthesis III
RU84_16220	PWY-5097	L-lysine biosynthesis VI
RU84_16220	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
RU84_16220	PWY-6160	3-dehydroquinate biosynthesis II (archaea)
RU84_16220	PWY-6559	spermidine biosynthesis II
RU84_16220	PWY-6562	norspermidine biosynthesis
RU84_16220	PWY-7153	grixazone biosynthesis
RU84_16220	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
RU84_16220	PWY-7977	RU84_16220
RU84_16265	PWY-7396	butanol and isobutanol biosynthesis (engineered)
RU84_16310	PWY-5506	methanol oxidation to formaldehyde IV
RU84_16475	PWY-1801	formaldehyde oxidation II (glutathione-dependent)
RU84_16510	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
RU84_16510	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
RU84_16645	PWY-5839	menaquinol-7 biosynthesis
RU84_16645	PWY-5844	menaquinol-9 biosynthesis
RU84_16645	PWY-5849	menaquinol-6 biosynthesis
RU84_16645	PWY-5890	menaquinol-10 biosynthesis
RU84_16645	PWY-5891	menaquinol-11 biosynthesis
RU84_16645	PWY-5892	menaquinol-12 biosynthesis
RU84_16645	PWY-5895	menaquinol-13 biosynthesis
RU84_16755	PWY-1042	glycolysis IV (plant cytosol)
RU84_16755	PWY-5484	glycolysis II (from fructose 6-phosphate)
RU84_16755	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
RU84_16755	PWY-7003	glycerol degradation to butanol
RU84_16775	PWY-7851	RU84_16775
RU84_16790	PWY-5532	adenosine nucleotides degradation IV
RU84_16790	PWY-7181	pyrimidine deoxyribonucleosides degradation
RU84_16845	PWY-5269	cardiolipin biosynthesis II
RU84_16845	PWY-5668	cardiolipin biosynthesis I
RU84_16845	PWY-7817	RU84_16845
RU84_16870	PWY-1361	benzoyl-CoA degradation I (aerobic)
RU84_16870	PWY-5109	2-methylbutanoate biosynthesis
RU84_16870	PWY-5136	fatty acid &beta;-oxidation II (peroxisome)
RU84_16870	PWY-5137	fatty acid &beta;-oxidation III (unsaturated, odd number)
RU84_16870	PWY-5138	unsaturated, even numbered fatty acid &beta;-oxidation
RU84_16870	PWY-5177	glutaryl-CoA degradation
RU84_16870	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
RU84_16870	PWY-6435	4-hydroxybenzoate biosynthesis V
RU84_16870	PWY-6583	pyruvate fermentation to butanol I
RU84_16870	PWY-6837	fatty acid beta-oxidation V (unsaturated, odd number, di-isomerase-dependent)
RU84_16870	PWY-6863	pyruvate fermentation to hexanol
RU84_16870	PWY-6883	pyruvate fermentation to butanol II
RU84_16870	PWY-6944	androstenedione degradation
RU84_16870	PWY-6945	cholesterol degradation to androstenedione I (cholesterol oxidase)
RU84_16870	PWY-6946	cholesterol degradation to androstenedione II (cholesterol dehydrogenase)
RU84_16870	PWY-7007	methyl ketone biosynthesis
RU84_16870	PWY-7046	4-coumarate degradation (anaerobic)
RU84_16870	PWY-7094	fatty acid salvage
RU84_16870	PWY-7216	(R)- and (S)-3-hydroxybutanoate biosynthesis
RU84_16870	PWY-7291	oleate &beta;-oxidation (isomerase-dependent, yeast)
RU84_16870	PWY-7292	oleate &beta;-oxidation (thioesterase-dependent, yeast)
RU84_16870	PWY-7307	oleate &beta;-oxidation (reductase-dependent, yeast)
RU84_16870	PWY-7337	10-<i>cis</i>-heptadecenoyl-CoA degradation (yeast)
RU84_16870	PWY-7338	10-<i>trans</i>-heptadecenoyl-CoA degradation (reductase-dependent, yeast)
RU84_16870	PWY-7340	9-<i>cis</i>, 11-<i>trans</i>-octadecadienoyl-CoA degradation (isomerase-dependent, yeast)
RU84_16870	PWY-735	jasmonic acid biosynthesis
RU84_16870	PWY-7401	crotonate fermentation (to acetate and cyclohexane carboxylate)
RU84_16870	PWY-7606	docosahexaenoate biosynthesis III (mammals)
RU84_16870	PWY-7654	(8<i>E</i>,10<i>E</i>)-dodeca-8,10-dienol biosynthesis
RU84_16870	PWY-7656	<i>Spodoptera littoralis</i> pheromone biosynthesis
RU84_16870	PWY-7726	RU84_16870
RU84_16870	PWY-7778	RU84_16870
RU84_16870	PWY-7779	RU84_16870
RU84_16875	PWY-5136	fatty acid &beta;-oxidation II (peroxisome)
RU84_16875	PWY-6435	4-hydroxybenzoate biosynthesis V
RU84_16875	PWY-6863	pyruvate fermentation to hexanol
RU84_16875	PWY-6945	cholesterol degradation to androstenedione I (cholesterol oxidase)
RU84_16875	PWY-6946	cholesterol degradation to androstenedione II (cholesterol dehydrogenase)
RU84_16875	PWY-6948	sitosterol degradation to androstenedione
RU84_16875	PWY-7094	fatty acid salvage
RU84_16875	PWY-7288	fatty acid &beta;-oxidation (peroxisome, yeast)
RU84_16875	PWY-7337	10-<i>cis</i>-heptadecenoyl-CoA degradation (yeast)
RU84_16875	PWY-7338	10-<i>trans</i>-heptadecenoyl-CoA degradation (reductase-dependent, yeast)
RU84_16875	PWY-7339	10-<i>trans</i>-heptadecenoyl-CoA degradation (MFE-dependent, yeast)
RU84_16875	PWY-7340	9-<i>cis</i>, 11-<i>trans</i>-octadecadienoyl-CoA degradation (isomerase-dependent, yeast)
RU84_16875	PWY-735	jasmonic acid biosynthesis
RU84_16875	PWY-7606	docosahexaenoate biosynthesis III (mammals)
RU84_16875	PWY-7654	(8<i>E</i>,10<i>E</i>)-dodeca-8,10-dienol biosynthesis
RU84_16875	PWY-7726	RU84_16875
RU84_17025	PWY-5958	acridone alkaloid biosynthesis
RU84_17025	PWY-6660	2-heptyl-3-hydroxy-4(1<i>H</i>)-quinolone biosynthesis
RU84_17025	PWY-6661	4-hydroxy-2(1<i>H</i>)-quinolone biosynthesis
RU84_17030	PWY-181	photorespiration
RU84_17075	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
RU84_17075	PWY-5189	tetrapyrrole biosynthesis II (from glycine)
RU84_17080	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
RU84_17080	PWY-5189	tetrapyrrole biosynthesis II (from glycine)
RU84_17095	PWY-4983	L-citrulline-nitric oxide cycle
RU84_17095	PWY-4984	urea cycle
RU84_17095	PWY-5	canavanine biosynthesis
RU84_17095	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
RU84_17095	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
RU84_17130	PWY-6890	4-amino-2-methyl-5-diphosphomethylpyrimidine biosynthesis
RU84_17155	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
RU84_17155	PWY-6385	peptidoglycan biosynthesis III (mycobacteria)
RU84_17155	PWY-6470	peptidoglycan biosynthesis V (&beta;-lactam resistance)
RU84_17155	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
RU84_17160	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
RU84_17160	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
RU84_17225	PWY-1042	glycolysis IV (plant cytosol)
RU84_17225	PWY-2221	Entner-Doudoroff pathway III (semi-phosphorylative)
RU84_17225	PWY-5484	glycolysis II (from fructose 6-phosphate)
RU84_17225	PWY-5723	Rubisco shunt
RU84_17225	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
RU84_17225	PWY-6886	1-butanol autotrophic biosynthesis
RU84_17225	PWY-6901	superpathway of glucose and xylose degradation
RU84_17225	PWY-7003	glycerol degradation to butanol
RU84_17225	PWY-7124	ethylene biosynthesis V (engineered)
RU84_17225	PWY-7218	photosynthetic 3-hydroxybutanoate biosynthesis (engineered)
RU84_17260	PWY-6167	flavin biosynthesis II (archaea)
RU84_17260	PWY-6168	flavin biosynthesis III (fungi)
RU84_17260	PWY-7980	RU84_17260
RU84_17270	PWY-7991	RU84_17270
RU84_17325	PWY-7805	RU84_17325
RU84_17325	PWY-7807	RU84_17325
RU84_17430	PWY-6936	seleno-amino acid biosynthesis
RU84_17545	PWY-7980	RU84_17545
RU84_17555	PWY-7980	RU84_17555
RU84_17615	PWY-6339	syringate degradation
RU84_17660	PWY-7221	guanosine ribonucleotides <i>de novo</i> biosynthesis
RU84_17715	PWY-6012	acyl carrier protein metabolism I
RU84_17715	PWY-6012-1	acyl carrier protein metabolism II (mammalian)
RU84_17715	PWY-6289	petrobactin biosynthesis
RU84_17765	PWY-6157	autoinducer AI-1 biosynthesis
RU84_17800	PWY-5642	2,4-dinitrotoluene degradation
RU84_17825	PWY-7383	anaerobic energy metabolism (invertebrates, cytosol)
RU84_17915	PWY-5747	2-methylcitrate cycle II
RU84_17925	PWY-5913	TCA cycle VI (obligate autotrophs)
RU84_17925	PWY-6318	L-phenylalanine degradation IV (mammalian, via side chain)
RU84_17925	PWY-6638	sulfolactate degradation III
RU84_17925	PWY-6642	(<i>R</i>)-cysteate degradation
RU84_17925	PWY-6643	coenzyme M biosynthesis II
RU84_17925	PWY-7115	C4 photosynthetic carbon assimilation cycle, NAD-ME type
RU84_17925	PWY-7117	C4 photosynthetic carbon assimilation cycle, PEPCK type
RU84_17925	PWY-7383	anaerobic energy metabolism (invertebrates, cytosol)
RU84_17930	PWY-5386	methylglyoxal degradation I
RU84_17930	PWY-7425	2-chloroacrylate degradation I
RU84_17950	PWY-6749	CMP-legionaminate biosynthesis I
RU84_17955	PWY-3821	galactose degradation III
RU84_17955	PWY-6317	galactose degradation I (Leloir pathway)
RU84_17955	PWY-6397	mycolyl-arabinogalactan-peptidoglycan complex biosynthesis
RU84_17955	PWY-6527	stachyose degradation
RU84_17955	PWY-7328	superpathway of UDP-glucose-derived O-antigen building blocks biosynthesis
RU84_17955	PWY-7344	UDP-D-galactose biosynthesis
RU84_17960	PWY-3801	sucrose degradation II (sucrose synthase)
RU84_17960	PWY-5054	sorbitol biosynthesis I
RU84_17960	PWY-5384	sucrose degradation IV (sucrose phosphorylase)
RU84_17960	PWY-5514	UDP-<i>N</i>-acetyl-D-galactosamine biosynthesis II
RU84_17960	PWY-5659	GDP-mannose biosynthesis
RU84_17960	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
RU84_17960	PWY-621	sucrose degradation III (sucrose invertase)
RU84_17960	PWY-622	starch biosynthesis
RU84_17960	PWY-6981	chitin biosynthesis
RU84_17960	PWY-6992	1,5-anhydrofructose degradation
RU84_17960	PWY-7238	sucrose biosynthesis II
RU84_17960	PWY-7347	sucrose biosynthesis III
RU84_17960	PWY-7385	1,3-propanediol biosynthesis (engineered)
RU84_17965	PWY-7346	UDP-&alpha;-D-glucuronate biosynthesis (from UDP-glucose)
RU84_17965	PWY-7820	RU84_17965
RU84_17970	PWY-3801	sucrose degradation II (sucrose synthase)
RU84_17970	PWY-6527	stachyose degradation
RU84_17970	PWY-7238	sucrose biosynthesis II
RU84_17970	PWY-7343	UDP-glucose biosynthesis
RU84_17970	PWY-7817	RU84_17970
RU84_18005	PWY-6143	CMP-pseudaminate biosynthesis
RU84_18020	PWY-1269	CMP-3-deoxy-D-<I>manno</I>-octulosonate biosynthesis I
RU84_18020	PWY-6143	CMP-pseudaminate biosynthesis
RU84_18030	PWY-6143	CMP-pseudaminate biosynthesis
RU84_18030	PWY-7330	UDP-<i>N</i>-acetyl-&beta;-L-fucosamine biosynthesis
RU84_18030	PWY-7331	UDP-<i>N</i>-acetyl-&beta;-L-quinovosamine biosynthesis
RU84_18030	PWY-7332	superpathway of UDP-<I>N</i>-acetylglucosamine-derived O-antigen building blocks biosynthesis
RU84_18030	PWY-7719	RU84_18030
RU84_18075	PWY-5316	nicotine biosynthesis
RU84_18075	PWY-5381	pyridine nucleotide cycling (plants)
RU84_18075	PWY-5653	NAD biosynthesis from 2-amino-3-carboxymuconate semialdehyde
RU84_18075	PWY-7342	superpathway of nicotine biosynthesis
RU84_18085	PWY-7782	RU84_18085
RU84_18085	PWY-7783	RU84_18085
RU84_18120	PWY-5855	ubiquinol-7 biosynthesis (prokaryotic)
RU84_18120	PWY-5856	ubiquinol-9 biosynthesis (prokaryotic)
RU84_18120	PWY-5857	ubiquinol-10 biosynthesis (prokaryotic)
RU84_18120	PWY-5870	ubiquinol-8 biosynthesis (eukaryotic)
RU84_18120	PWY-5871	ubiquinol-9 biosynthesis (eukaryotic)
RU84_18120	PWY-5872	ubiquinol-10 biosynthesis (eukaryotic)
RU84_18120	PWY-5873	ubiquinol-7 biosynthesis (eukaryotic)
RU84_18120	PWY-6708	ubiquinol-8 biosynthesis (prokaryotic)
RU84_18120	PWY-7230	ubiquinol-6 biosynthesis from 4-aminobenzoate (eukaryotic)
RU84_18120	PWY-7233	ubiquinol-6 bypass biosynthesis (eukaryotic)
RU84_18145	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
RU84_18190	PWY-5523	5,6-dimethylbenzimidazole biosynthesis
RU84_18190	PWY-6167	flavin biosynthesis II (archaea)
RU84_18190	PWY-6168	flavin biosynthesis III (fungi)
RU84_18190	PWY-7863	RU84_18190
RU84_18200	PWY-7884	RU84_18200
RU84_18310	PWY-6123	inosine-5'-phosphate biosynthesis I
RU84_18310	PWY-7234	inosine-5'-phosphate biosynthesis III
RU84_18325	PWY-7883	RU84_18325
RU84_18360	PWY-5497	purine nucleobases degradation II (anaerobic)
RU84_18360	PWY-6606	guanosine nucleotides degradation II
RU84_18360	PWY-6608	guanosine nucleotides degradation III
RU84_18360	PWY-7442	drosopterin and aurodrosopterin biosynthesis
RU84_18370	PWY-6599	guanine and guanosine salvage II
RU84_18370	PWY-6609	adenine and adenosine salvage III
RU84_18370	PWY-6610	adenine and adenosine salvage IV
RU84_18370	PWY-6620	guanine and guanosine salvage
RU84_18450	PWY-7221	guanosine ribonucleotides <i>de novo</i> biosynthesis
RU84_18490	PWY-7376	cob(II)yrinate <i>a,c</i>-diamide biosynthesis II (late cobalt incorporation)
RU84_18585	PWY-6545	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis III
RU84_18585	PWY-7184	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis I
RU84_18585	PWY-7198	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis IV
RU84_18585	PWY-7210	pyrimidine deoxyribonucleotides biosynthesis from CTP
RU84_18585	PWY-7220	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis II
RU84_18585	PWY-7222	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis II
RU84_18585	PWY-7226	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis I
RU84_18585	PWY-7227	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis
RU84_18590	PWY-6545	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis III
RU84_18590	PWY-7184	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis I
RU84_18590	PWY-7198	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis IV
RU84_18590	PWY-7210	pyrimidine deoxyribonucleotides biosynthesis from CTP
RU84_18590	PWY-7220	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis II
RU84_18590	PWY-7222	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis II
RU84_18590	PWY-7226	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis I
RU84_18590	PWY-7227	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis
RU84_18595	PWY-6545	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis III
RU84_18730	PWY-1801	formaldehyde oxidation II (glutathione-dependent)
RU84_18735	PWY-1801	formaldehyde oxidation II (glutathione-dependent)
RU84_18735	PWY-3162	L-tryptophan degradation V (side chain pathway)
RU84_18735	PWY-5057	L-valine degradation II
RU84_18735	PWY-5076	L-leucine degradation III
RU84_18735	PWY-5078	L-isoleucine degradation II
RU84_18735	PWY-5079	L-phenylalanine degradation III
RU84_18735	PWY-5082	L-methionine degradation III
RU84_18735	PWY-5480	pyruvate fermentation to ethanol I
RU84_18735	PWY-5486	pyruvate fermentation to ethanol II
RU84_18735	PWY-5751	phenylethanol biosynthesis
RU84_18735	PWY-6313	serotonin degradation
RU84_18735	PWY-6333	acetaldehyde biosynthesis I
RU84_18735	PWY-6342	noradrenaline and adrenaline degradation
RU84_18735	PWY-6587	pyruvate fermentation to ethanol III
RU84_18735	PWY-6802	salidroside biosynthesis
RU84_18735	PWY-6871	3-methylbutanol biosynthesis
RU84_18735	PWY-7013	L-1,2-propanediol degradation
RU84_18735	PWY-7111	pyruvate fermentation to isobutanol (engineered)
RU84_18735	PWY-7118	chitin degradation to ethanol
RU84_18735	PWY-7396	butanol and isobutanol biosynthesis (engineered)
RU84_18735	PWY-7798	RU84_18735
