RU84_00005 SM00382 ATPases associated with a variety of cellular activities RU84_00005 SM00760 Bacterial dnaA protein helix-turn-helix domain RU84_00010 SM00480 DNA polymerase III beta subunit RU84_00020 SM00387 Histidine kinase-like ATPases RU84_00020 SM00433 TopoisomeraseII RU84_00035 SM00382 ATPases associated with a variety of cellular activities RU84_00185 SM00271 DnaJ molecular chaperone homology domain RU84_00225 SM00345 helix_turn_helix gluconate operon transcriptional repressor RU84_00230 SM00829 Enoylreductase RU84_00250 SM00478 endonuclease III RU84_00250 SM00525 RU84_00250 RU84_00280 SM00382 ATPases associated with a variety of cellular activities RU84_00305 SM01130 RU84_00305 RU84_00335 SM00346 helix_turn_helix isocitrate lyase regulation RU84_00365 SM00833 Cobalamin synthesis protein cobW C-terminal domain RU84_00375 SM00345 helix_turn_helix gluconate operon transcriptional repressor RU84_00375 SM00866 RU84_00375 RU84_00490 SM00450 Rhodanese Homology Domain RU84_00520 SM00387 Histidine kinase-like ATPases RU84_00520 SM00388 His Kinase A (phosphoacceptor) domain RU84_00525 SM00448 cheY-homologous receiver domain RU84_00525 SM00862 Transcriptional regulatory protein, C terminal RU84_00580 SM00257 Lysin motif RU84_00615 SM00387 Histidine kinase-like ATPases RU84_00615 SM00433 TopoisomeraseII RU84_00680 SM00267 diguanylate cyclase RU84_00745 SM00842 Cell division protein FtsA RU84_00750 SM00864 Tubulin/FtsZ family, GTPase domain RU84_00750 SM00865 Tubulin/FtsZ family, C-terminal domain RU84_00795 SM00849 Metallo-beta-lactamase superfamily RU84_00805 SM00116 Domain in cystathionine beta-synthase and other proteins. RU84_00805 SM01240 RU84_00805 RU84_00830 SM00937 RU84_00830 RU84_00835 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor RU84_00875 SM00344 helix_turn_helix ASNC type RU84_00890 SM00421 helix_turn_helix, Lux Regulon RU84_00890 SM00448 cheY-homologous receiver domain RU84_00900 SM00387 Histidine kinase-like ATPases RU84_00900 SM00388 His Kinase A (phosphoacceptor) domain RU84_00900 SM00448 cheY-homologous receiver domain RU84_00930 SM00267 diguanylate cyclase RU84_00945 SM00829 Enoylreductase RU84_00990 SM00530 Helix-turn-helix XRE-family like proteins RU84_01000 SM00345 helix_turn_helix gluconate operon transcriptional repressor RU84_01080 SM00342 helix_turn_helix, arabinose operon control protein RU84_01140 SM00477 DNA/RNA non-specific endonuclease RU84_01140 SM00892 DNA/RNA non-specific endonuclease RU84_01160 SM00342 helix_turn_helix, arabinose operon control protein RU84_01180 SM00357 Cold shock protein domain RU84_01195 SM00530 Helix-turn-helix XRE-family like proteins RU84_01205 SM00474 3'-5' exonuclease RU84_01250 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain RU84_01250 SM00387 Histidine kinase-like ATPases RU84_01250 SM00388 His Kinase A (phosphoacceptor) domain RU84_01255 SM00448 cheY-homologous receiver domain RU84_01255 SM00862 Transcriptional regulatory protein, C terminal RU84_01260 SM00316 Ribosomal protein S1-like RNA-binding domain RU84_01260 SM00732 Likely ribonuclease with RNase H fold. RU84_01265 SM00947 Carbonic anhydrase RU84_01280 SM00382 ATPases associated with a variety of cellular activities RU84_01285 SM00671 Sel1-like repeats. RU84_01435 SM00842 Cell division protein FtsA RU84_01455 SM00965 Secretin and TonB N terminus short domain RU84_01535 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. RU84_01535 SM00954 Region found in RelA / SpoT proteins RU84_01540 SM01409 RU84_01540 RU84_01545 SM00072 Guanylate kinase homologues. RU84_01730 SM00839 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase RU84_01835 SM00116 Domain in cystathionine beta-synthase and other proteins. RU84_01875 SM00861 Transketolase, pyrimidine binding domain RU84_01885 SM00487 DEAD-like helicases superfamily RU84_01885 SM00490 helicase superfamily c-terminal domain RU84_01895 SM00382 ATPases associated with a variety of cellular activities RU84_01940 SM00487 DEAD-like helicases superfamily RU84_01940 SM00490 helicase superfamily c-terminal domain RU84_01955 SM00563 Phosphate acyltransferases RU84_02005 SM01403 RU84_02005 RU84_02025 SM01382 RU84_02025 RU84_02025 SM01383 RU84_02025 RU84_02040 SM00322 K homology RNA-binding domain RU84_02060 SM01374 RU84_02060 RU84_02065 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. RU84_02130 SM00363 S4 RNA-binding domain RU84_02130 SM01390 RU84_02130 RU84_02135 SM00662 RNA polymerases D RU84_02195 SM00316 Ribosomal protein S1-like RNA-binding domain RU84_02195 SM00955 RU84_02195 RU84_02245 SM00342 helix_turn_helix, arabinose operon control protein RU84_02295 SM00729 Elongator protein 3, MiaB family, Radical SAM RU84_02325 SM00702 Prolyl 4-hydroxylase alpha subunit homologues. RU84_02415 SM00878 Biotin carboxylase C-terminal domain RU84_02440 SM00849 Metallo-beta-lactamase superfamily RU84_02495 SM00650 Ribosomal RNA adenine dimethylases RU84_02525 SM00563 Phosphate acyltransferases RU84_02530 SM00155 Phospholipase D. Active site motifs. RU84_02545 SM00267 diguanylate cyclase RU84_02620 SM00450 Rhodanese Homology Domain RU84_02645 SM00481 DNA polymerase alpha chain like domain RU84_02675 SM01323 RU84_02675 RU84_02765 SM00530 Helix-turn-helix XRE-family like proteins RU84_02895 SM00028 Tetratricopeptide repeats RU84_02920 SM00387 Histidine kinase-like ATPases RU84_02920 SM00388 His Kinase A (phosphoacceptor) domain RU84_03040 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain RU84_03040 SM00387 Histidine kinase-like ATPases RU84_03040 SM00388 His Kinase A (phosphoacceptor) domain RU84_03045 SM00448 cheY-homologous receiver domain RU84_03045 SM00862 Transcriptional regulatory protein, C terminal RU84_03105 SM00342 helix_turn_helix, arabinose operon control protein RU84_03135 SM00849 Metallo-beta-lactamase superfamily RU84_03145 SM00957 SecA DEAD-like domain RU84_03145 SM00958 SecA preprotein cross-linking domain RU84_03195 SM00342 helix_turn_helix, arabinose operon control protein RU84_03210 SM00564 beta-propeller repeat RU84_03275 SM00838 Elongation factor G C-terminus RU84_03295 SM00898 Formamidopyrimidine-DNA glycosylase N-terminal domain RU84_03295 SM01232 RU84_03295 RU84_03320 SM00671 Sel1-like repeats. RU84_03375 SM00448 cheY-homologous receiver domain RU84_03380 SM00448 cheY-homologous receiver domain RU84_03385 SM00260 Two component signalling adaptor domain RU84_03390 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). RU84_03395 SM00073 Histidine Phosphotransfer domain RU84_03395 SM00260 Two component signalling adaptor domain RU84_03395 SM00387 Histidine kinase-like ATPases RU84_03395 SM00448 cheY-homologous receiver domain RU84_03395 SM01231 RU84_03395 RU84_03405 SM00729 Elongator protein 3, MiaB family, Radical SAM RU84_03550 SM00845 GatB domain RU84_03585 SM00316 Ribosomal protein S1-like RNA-binding domain RU84_03620 SM00342 helix_turn_helix, arabinose operon control protein RU84_03640 SM00342 helix_turn_helix, arabinose operon control protein RU84_03645 SM00829 Enoylreductase RU84_03680 SM00244 prohibitin homologues RU84_03695 SM00563 Phosphate acyltransferases RU84_03715 SM00448 cheY-homologous receiver domain RU84_03715 SM00862 Transcriptional regulatory protein, C terminal RU84_03720 SM00387 Histidine kinase-like ATPases RU84_03720 SM00388 His Kinase A (phosphoacceptor) domain RU84_03765 SM00822 RU84_03765 RU84_03800 SM00014 Acid phosphatase homologues RU84_03905 SM00450 Rhodanese Homology Domain RU84_03940 SM00861 Transketolase, pyrimidine binding domain RU84_03960 SM00881 CoA binding domain RU84_03995 SM00854 Bacterial capsule synthesis protein PGA_cap RU84_04035 SM00851 MGS-like domain RU84_04035 SM01096 Carbamoyl-phosphate synthetase large chain, oligomerisation domain RU84_04040 SM01097 Carbamoyl-phosphate synthase small chain, CPSase domain RU84_04055 SM01103 RU84_04055 RU84_04065 SM00382 ATPases associated with a variety of cellular activities RU84_04140 SM00046 Diacylglycerol kinase catalytic domain (presumed) RU84_04155 SM00883 Chaperonin 10 Kd subunit RU84_04170 SM00849 Metallo-beta-lactamase superfamily RU84_04320 SM00978 RU84_04320 RU84_04325 SM00382 ATPases associated with a variety of cellular activities RU84_04360 SM00893 Electron transfer flavoprotein domain RU84_04365 SM00893 Electron transfer flavoprotein domain RU84_04370 SM00434 DNA Topoisomerase IV RU84_04440 SM00382 ATPases associated with a variety of cellular activities RU84_04580 SM00382 ATPases associated with a variety of cellular activities RU84_04585 SM00278 Helix-hairpin-helix DNA-binding motif class 1 RU84_04590 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. RU84_04595 SM01211 RU84_04595 RU84_04670 SM00382 ATPases associated with a variety of cellular activities RU84_04720 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. RU84_04730 SM00838 Elongation factor G C-terminus RU84_04745 SM00358 Double-stranded RNA binding motif RU84_04745 SM00535 Ribonuclease III family RU84_04820 SM00267 diguanylate cyclase RU84_04830 SM00487 DEAD-like helicases superfamily RU84_04830 SM00490 helicase superfamily c-terminal domain RU84_04845 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain RU84_04865 SM00359 Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase RU84_04965 SM01329 RU84_04965 RU84_05015 SM00880 RU84_05015 RU84_05015 SM01118 RU84_05015 RU84_05045 SM00487 DEAD-like helicases superfamily RU84_05045 SM00490 helicase superfamily c-terminal domain RU84_05100 SM00344 helix_turn_helix ASNC type RU84_05130 SM00382 ATPases associated with a variety of cellular activities RU84_05175 SM00936 Penicillin-binding protein 5, C-terminal domain RU84_05195 SM00257 Lysin motif RU84_05230 SM00052 Putative diguanylate phosphodiesterase RU84_05245 SM00841 Elongation factor P, C-terminal RU84_05245 SM01185 RU84_05245 RU84_05265 SM00829 Enoylreductase RU84_05275 SM00342 helix_turn_helix, arabinose operon control protein RU84_05330 SM00382 ATPases associated with a variety of cellular activities RU84_05375 SM00382 ATPases associated with a variety of cellular activities RU84_05380 SM00382 ATPases associated with a variety of cellular activities RU84_05435 SM01092 CO dehydrogenase flavoprotein C-terminal domain RU84_05440 SM01008 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain RU84_05450 SM00463 Small MutS-related domain RU84_05490 SM01230 RU84_05490 RU84_05545 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. RU84_05555 SM00919 Malic enzyme, NAD binding domain RU84_05555 SM01274 RU84_05555 RU84_05560 SM00052 Putative diguanylate phosphodiesterase RU84_05560 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) RU84_05560 SM00091 PAS domain RU84_05560 SM00267 diguanylate cyclase RU84_05575 SM00996 S-adenosyl-L-homocysteine hydrolase RU84_05575 SM00997 S-adenosyl-L-homocysteine hydrolase, NAD binding domain RU84_05595 SM00729 Elongator protein 3, MiaB family, Radical SAM RU84_05645 SM00342 helix_turn_helix, arabinose operon control protein RU84_05695 SM00382 ATPases associated with a variety of cellular activities RU84_05710 SM00479 RU84_05710 RU84_05745 SM00062 Bacterial periplasmic substrate-binding proteins RU84_05760 SM00382 ATPases associated with a variety of cellular activities RU84_05780 SM00345 helix_turn_helix gluconate operon transcriptional repressor RU84_05805 SM00382 ATPases associated with a variety of cellular activities RU84_05815 SM00448 cheY-homologous receiver domain RU84_05815 SM00862 Transcriptional regulatory protein, C terminal RU84_05820 SM00387 Histidine kinase-like ATPases RU84_05820 SM00388 His Kinase A (phosphoacceptor) domain RU84_05875 SM00830 Chorismate mutase type II RU84_05940 SM00357 Cold shock protein domain RU84_05945 SM00487 DEAD-like helicases superfamily RU84_05945 SM00490 helicase superfamily c-terminal domain RU84_05965 SM00855 Phosphoglycerate mutase family RU84_06045 SM00220 Serine/Threonine protein kinases, catalytic domain RU84_06170 SM01034 Sensors of blue-light using FAD RU84_06185 SM00342 helix_turn_helix, arabinose operon control protein RU84_06205 SM00345 helix_turn_helix gluconate operon transcriptional repressor RU84_06205 SM00895 RU84_06205 RU84_06220 SM00972 Spore Coat Protein U domain RU84_06250 SM00972 Spore Coat Protein U domain RU84_06315 SM00095 Transthyretin RU84_06325 SM00448 cheY-homologous receiver domain RU84_06325 SM00862 Transcriptional regulatory protein, C terminal RU84_06330 SM00387 Histidine kinase-like ATPases RU84_06330 SM00388 His Kinase A (phosphoacceptor) domain RU84_06370 SM00388 His Kinase A (phosphoacceptor) domain RU84_06375 SM00448 cheY-homologous receiver domain RU84_06375 SM00862 Transcriptional regulatory protein, C terminal RU84_06445 SM00849 Metallo-beta-lactamase superfamily RU84_06455 SM00382 ATPases associated with a variety of cellular activities RU84_06455 SM00930 RU84_06455 RU84_06465 SM01209 RU84_06465 RU84_06465 SM01210 RU84_06465 RU84_06470 SM00798 AICARFT/IMPCHase bienzyme RU84_06470 SM00851 MGS-like domain RU84_06495 SM01228 RU84_06495 RU84_06515 SM00460 Transglutaminase/protease-like homologues RU84_06525 SM01005 Alanine racemase, C-terminal domain RU84_06640 SM00937 RU84_06640 RU84_06650 SM00342 helix_turn_helix, arabinose operon control protein RU84_06655 SM00822 RU84_06655 RU84_06670 SM00903 Flavin reductase like domain RU84_06685 SM00905 Dihydroneopterin aldolase RU84_06710 SM00387 Histidine kinase-like ATPases RU84_06710 SM00388 His Kinase A (phosphoacceptor) domain RU84_06715 SM00448 cheY-homologous receiver domain RU84_06715 SM00862 Transcriptional regulatory protein, C terminal RU84_06720 SM01230 RU84_06720 RU84_06800 SM00363 S4 RNA-binding domain RU84_06825 SM00853 MutL C terminal dimerisation domain RU84_06825 SM01340 RU84_06825 RU84_06890 SM00862 Transcriptional regulatory protein, C terminal RU84_06905 SM00382 ATPases associated with a variety of cellular activities RU84_06935 SM00972 Spore Coat Protein U domain RU84_06950 SM00972 Spore Coat Protein U domain RU84_06970 SM00830 Chorismate mutase type II RU84_06975 SM00344 helix_turn_helix ASNC type RU84_07060 SM00382 ATPases associated with a variety of cellular activities RU84_07085 SM00831 Cation transporter/ATPase, N-terminus RU84_07100 SM00344 helix_turn_helix ASNC type RU84_07130 SM00822 RU84_07130 RU84_07165 SM00382 ATPases associated with a variety of cellular activities RU84_07190 SM00226 Low molecular weight phosphatase family RU84_07245 SM01236 RU84_07245 RU84_07260 SM00878 Biotin carboxylase C-terminal domain RU84_07285 SM00448 cheY-homologous receiver domain RU84_07285 SM01012 RU84_07285 RU84_07305 SM00926 Molybdopterin oxidoreductase Fe4S4 domain RU84_07315 SM00926 Molybdopterin oxidoreductase Fe4S4 domain RU84_07320 SM00729 Elongator protein 3, MiaB family, Radical SAM RU84_07335 SM00852 Probable molybdopterin binding domain RU84_07340 SM00852 Probable molybdopterin binding domain RU84_07350 SM00345 helix_turn_helix gluconate operon transcriptional repressor RU84_07435 SM00382 ATPases associated with a variety of cellular activities RU84_07435 SM00448 cheY-homologous receiver domain RU84_07440 SM00091 PAS domain RU84_07440 SM00387 Histidine kinase-like ATPases RU84_07440 SM00388 His Kinase A (phosphoacceptor) domain RU84_07445 SM00729 Elongator protein 3, MiaB family, Radical SAM RU84_07475 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. RU84_07485 SM00935 Outer membrane protein (OmpH-like) RU84_07520 SM00382 ATPases associated with a variety of cellular activities RU84_07525 SM00363 S4 RNA-binding domain RU84_07555 SM00344 helix_turn_helix ASNC type RU84_07600 SM00052 Putative diguanylate phosphodiesterase RU84_07600 SM00091 PAS domain RU84_07600 SM00267 diguanylate cyclase RU84_07610 SM00347 helix_turn_helix multiple antibiotic resistance protein RU84_07685 SM00116 Domain in cystathionine beta-synthase and other proteins. RU84_07710 SM00382 ATPases associated with a variety of cellular activities RU84_07710 SM00962 SRP54-type protein, GTPase domain RU84_07710 SM00963 SRP54-type protein, helical bundle domain RU84_07770 SM01264 RU84_07770 RU84_07810 SM00859 Semialdehyde dehydrogenase, NAD binding domain RU84_07825 SM00382 ATPases associated with a variety of cellular activities RU84_07825 SM01086 C-terminal, D2-small domain, of ClpB protein RU84_07890 SM01192 RU84_07890 RU84_07890 SM01193 RU84_07890 RU84_07910 SM00882 Coenzyme A transferase RU84_07915 SM00882 Coenzyme A transferase RU84_07925 SM00998 Adenylosuccinate lyase C-terminus RU84_07960 SM00710 Parallel beta-helix repeats RU84_07970 SM00564 beta-propeller repeat RU84_07990 SM00849 Metallo-beta-lactamase superfamily RU84_07995 SM00346 helix_turn_helix isocitrate lyase regulation RU84_08015 SM00855 Phosphoglycerate mutase family RU84_08035 SM00347 helix_turn_helix multiple antibiotic resistance protein RU84_08080 SM00903 Flavin reductase like domain RU84_08085 SM00342 helix_turn_helix, arabinose operon control protein RU84_08115 SM00882 Coenzyme A transferase RU84_08120 SM00882 Coenzyme A transferase RU84_08135 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain RU84_08150 SM00345 helix_turn_helix gluconate operon transcriptional repressor RU84_08150 SM00895 RU84_08150 RU84_08200 SM00422 helix_turn_helix, mercury resistance RU84_08250 SM00822 RU84_08250 RU84_08340 SM00345 helix_turn_helix gluconate operon transcriptional repressor RU84_08340 SM00866 RU84_08340 RU84_08425 SM00342 helix_turn_helix, arabinose operon control protein RU84_08430 SM00829 Enoylreductase RU84_08445 SM00382 ATPases associated with a variety of cellular activities RU84_08455 SM00342 helix_turn_helix, arabinose operon control protein RU84_08465 SM01400 RU84_08465 RU84_08530 SM00530 Helix-turn-helix XRE-family like proteins RU84_08565 SM00822 RU84_08565 RU84_08570 SM00822 RU84_08570 RU84_08580 SM00342 helix_turn_helix, arabinose operon control protein RU84_08590 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain RU84_08590 SM00387 Histidine kinase-like ATPases RU84_08590 SM00388 His Kinase A (phosphoacceptor) domain RU84_08595 SM00448 cheY-homologous receiver domain RU84_08595 SM00862 Transcriptional regulatory protein, C terminal RU84_08625 SM00882 Coenzyme A transferase RU84_08630 SM00882 Coenzyme A transferase RU84_08690 SM00382 ATPases associated with a variety of cellular activities RU84_08715 SM00345 helix_turn_helix gluconate operon transcriptional repressor RU84_08715 SM00866 RU84_08715 RU84_08735 SM00342 helix_turn_helix, arabinose operon control protein RU84_08760 SM00849 Metallo-beta-lactamase superfamily RU84_08765 SM00382 ATPases associated with a variety of cellular activities RU84_08775 SM00829 Enoylreductase RU84_08795 SM00861 Transketolase, pyrimidine binding domain RU84_08805 SM00729 Elongator protein 3, MiaB family, Radical SAM RU84_08820 SM00267 diguanylate cyclase RU84_08850 SM00493 RU84_08850 RU84_08900 SM01324 RU84_08900 RU84_08940 SM00382 ATPases associated with a variety of cellular activities RU84_09000 SM00855 Phosphoglycerate mutase family RU84_09025 SM01006 Siderophore biosynthesis protein domain RU84_09115 SM00342 helix_turn_helix, arabinose operon control protein RU84_09125 SM00411 bacterial (prokaryotic) histone like domain RU84_09160 SM00271 DnaJ molecular chaperone homology domain RU84_09175 SM00044 Adenylyl- / guanylyl cyclase, catalytic domain RU84_09185 SM00487 DEAD-like helicases superfamily RU84_09185 SM00490 helicase superfamily c-terminal domain RU84_09185 SM00982 RU84_09185 RU84_09185 SM01058 CarD-like/TRCF domain RU84_09240 SM00382 ATPases associated with a variety of cellular activities RU84_09305 SM00342 helix_turn_helix, arabinose operon control protein RU84_09320 SM00934 Orotidine 5'-phosphate decarboxylase / HUMPS family RU84_09330 SM00411 bacterial (prokaryotic) histone like domain RU84_09335 SM00316 Ribosomal protein S1-like RNA-binding domain RU84_09360 SM00986 Uracil DNA glycosylase superfamily RU84_09360 SM00987 UreE urease accessory protein, C-terminal domain RU84_09420 SM00382 ATPases associated with a variety of cellular activities RU84_09435 SM00470 ParB-like nuclease domain RU84_09495 SM00558 A domain family that is part of the cupin metalloenzyme superfamily. RU84_09505 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor RU84_09525 SM00382 ATPases associated with a variety of cellular activities RU84_09535 SM00342 helix_turn_helix, arabinose operon control protein RU84_09555 SM00344 helix_turn_helix ASNC type RU84_09590 SM00867 YceI-like domain RU84_09600 SM00861 Transketolase, pyrimidine binding domain RU84_09635 SM00530 Helix-turn-helix XRE-family like proteins RU84_09655 SM00729 Elongator protein 3, MiaB family, Radical SAM RU84_09655 SM00876 Biotin and Thiamin Synthesis associated domain RU84_09735 SM01236 RU84_09735 RU84_09750 SM00563 Phosphate acyltransferases RU84_09760 SM00344 helix_turn_helix ASNC type RU84_09770 SM00382 ATPases associated with a variety of cellular activities RU84_09785 SM00062 Bacterial periplasmic substrate-binding proteins RU84_09820 SM00382 ATPases associated with a variety of cellular activities RU84_09820 SM00930 RU84_09820 RU84_09840 SM00100 Cyclic nucleotide-monophosphate binding domain RU84_09840 SM00419 helix_turn_helix, cAMP Regulatory protein RU84_09875 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. RU84_09895 SM00342 helix_turn_helix, arabinose operon control protein RU84_09920 SM00870 RU84_09920 RU84_09925 SM00481 DNA polymerase alpha chain like domain RU84_09975 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor RU84_10005 SM00345 helix_turn_helix gluconate operon transcriptional repressor RU84_10005 SM00895 RU84_10005 RU84_10030 SM00382 ATPases associated with a variety of cellular activities RU84_10035 SM00062 Bacterial periplasmic substrate-binding proteins RU84_10080 SM00345 helix_turn_helix gluconate operon transcriptional repressor RU84_10100 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. RU84_10160 SM00345 helix_turn_helix gluconate operon transcriptional repressor RU84_10195 SM00822 RU84_10195 RU84_10205 SM00450 Rhodanese Homology Domain RU84_10235 SM00062 Bacterial periplasmic substrate-binding proteins RU84_10240 SM00062 Bacterial periplasmic substrate-binding proteins RU84_10245 SM00382 ATPases associated with a variety of cellular activities RU84_10265 SM00421 helix_turn_helix, Lux Regulon RU84_10265 SM00448 cheY-homologous receiver domain RU84_10270 SM00387 Histidine kinase-like ATPases RU84_10270 SM00388 His Kinase A (phosphoacceptor) domain RU84_10270 SM00448 cheY-homologous receiver domain RU84_10280 SM00344 helix_turn_helix ASNC type RU84_10300 SM00384 DNA binding domain with preference for A/T rich regions RU84_10320 SM01060 RU84_10320 RU84_10325 SM01236 RU84_10325 RU84_10410 SM00878 Biotin carboxylase C-terminal domain RU84_10455 SM00882 Coenzyme A transferase RU84_10460 SM00882 Coenzyme A transferase RU84_10495 SM00346 helix_turn_helix isocitrate lyase regulation RU84_10515 SM00346 helix_turn_helix isocitrate lyase regulation RU84_10555 SM00382 ATPases associated with a variety of cellular activities RU84_10565 SM00345 helix_turn_helix gluconate operon transcriptional repressor RU84_10565 SM00866 RU84_10565 RU84_10575 SM01005 Alanine racemase, C-terminal domain RU84_10585 SM00346 helix_turn_helix isocitrate lyase regulation RU84_10630 SM00903 Flavin reductase like domain RU84_10645 SM00345 helix_turn_helix gluconate operon transcriptional repressor RU84_10645 SM00895 RU84_10645 RU84_10660 SM01060 RU84_10660 RU84_10795 SM00342 helix_turn_helix, arabinose operon control protein RU84_10820 SM00345 helix_turn_helix gluconate operon transcriptional repressor RU84_10820 SM00895 RU84_10820 RU84_10830 SM01130 RU84_10830 RU84_10840 SM00422 helix_turn_helix, mercury resistance RU84_10875 SM00878 Biotin carboxylase C-terminal domain RU84_10880 SM00796 Allophanate hydrolase subunit 1 RU84_10880 SM00797 Allophanate hydrolase subunit 2 RU84_10980 SM00422 helix_turn_helix, mercury resistance RU84_11015 SM00052 Putative diguanylate phosphodiesterase RU84_11025 SM00344 helix_turn_helix ASNC type RU84_11030 SM00533 DNA-binding domain of DNA mismatch repair MUTS family RU84_11030 SM00534 ATPase domain of DNA mismatch repair MUTS family RU84_11075 SM00382 ATPases associated with a variety of cellular activities RU84_11085 SM00382 ATPases associated with a variety of cellular activities RU84_11105 SM00116 Domain in cystathionine beta-synthase and other proteins. RU84_11110 SM00840 RU84_11110 RU84_11180 SM00357 Cold shock protein domain RU84_11200 SM00530 Helix-turn-helix XRE-family like proteins RU84_11250 SM00422 helix_turn_helix, mercury resistance RU84_11265 SM00382 ATPases associated with a variety of cellular activities RU84_11265 SM00989 RU84_11265 RU84_11350 SM00382 ATPases associated with a variety of cellular activities RU84_11350 SM00487 DEAD-like helicases superfamily RU84_11350 SM00490 helicase superfamily c-terminal domain RU84_11350 SM00847 Helicase associated domain (HA2) Add an annotation RU84_11430 SM00981 RU84_11430 RU84_11445 SM00382 ATPases associated with a variety of cellular activities RU84_11445 SM01086 C-terminal, D2-small domain, of ClpB protein RU84_11470 SM00100 Cyclic nucleotide-monophosphate binding domain RU84_11470 SM00419 helix_turn_helix, cAMP Regulatory protein RU84_11490 SM00788 Adenylosuccinate synthetase RU84_11505 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain RU84_11510 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain RU84_11600 SM00342 helix_turn_helix, arabinose operon control protein RU84_11660 SM00345 helix_turn_helix gluconate operon transcriptional repressor RU84_11660 SM00895 RU84_11660 RU84_11665 SM00347 helix_turn_helix multiple antibiotic resistance protein RU84_11715 SM00345 helix_turn_helix gluconate operon transcriptional repressor RU84_11715 SM00895 RU84_11715 RU84_11725 SM01130 RU84_11725 RU84_11730 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain RU84_11750 SM00342 helix_turn_helix, arabinose operon control protein RU84_11800 SM00344 helix_turn_helix ASNC type RU84_11815 SM00345 helix_turn_helix gluconate operon transcriptional repressor RU84_11815 SM00895 RU84_11815 RU84_11940 SM00487 DEAD-like helicases superfamily RU84_12085 SM00267 diguanylate cyclase RU84_12095 SM00479 RU84_12095 RU84_12115 SM00382 ATPases associated with a variety of cellular activities RU84_12135 SM00257 Lysin motif RU84_12140 SM00479 RU84_12140 RU84_12195 SM00422 helix_turn_helix, mercury resistance RU84_12215 SM01011 Aminopeptidase P, N-terminal domain RU84_12490 SM00507 HNH nucleases RU84_12530 SM00530 Helix-turn-helix XRE-family like proteins RU84_12540 SM00530 Helix-turn-helix XRE-family like proteins RU84_12605 SM00382 ATPases associated with a variety of cellular activities RU84_12605 SM00464 Found in ATP-dependent protease La (LON) RU84_12625 SM00839 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase RU84_12635 SM00478 endonuclease III RU84_12680 SM00988 UreE urease accessory protein, N-terminal domain RU84_12725 SM01091 Transporter associated domain RU84_12820 SM00382 ATPases associated with a variety of cellular activities RU84_12830 SM00947 Carbonic anhydrase RU84_12890 SM01018 B12 binding domain RU84_12895 SM00861 Transketolase, pyrimidine binding domain RU84_12910 SM00822 RU84_12910 RU84_13025 SM00346 helix_turn_helix isocitrate lyase regulation RU84_13065 SM01322 RU84_13065 RU84_13160 SM01130 RU84_13160 RU84_13215 SM00487 DEAD-like helicases superfamily RU84_13215 SM00490 helicase superfamily c-terminal domain RU84_13280 SM00487 DEAD-like helicases superfamily RU84_13490 SM00530 Helix-turn-helix XRE-family like proteins RU84_13510 SM00382 ATPases associated with a variety of cellular activities RU84_13565 SM00530 Helix-turn-helix XRE-family like proteins RU84_13600 SM00479 RU84_13600 RU84_13640 SM00901 RU84_13640 RU84_13680 SM01004 Delta-aminolevulinic acid dehydratase RU84_13725 SM00382 ATPases associated with a variety of cellular activities RU84_13795 SM00563 Phosphate acyltransferases RU84_13835 SM00843 RU84_13835 RU84_13875 SM00838 Elongation factor G C-terminus RU84_13875 SM00889 Elongation factor G, domain IV RU84_13895 SM00825 Beta-ketoacyl synthase RU84_13955 SM01329 RU84_13955 RU84_14125 SM00507 HNH nucleases RU84_14175 SM00990 RU84_14175 RU84_14220 SM00382 ATPases associated with a variety of cellular activities RU84_14240 SM00530 Helix-turn-helix XRE-family like proteins RU84_14335 SM00363 S4 RNA-binding domain RU84_14345 SM00400 zinc finger RU84_14345 SM00493 RU84_14345 RU84_14355 SM00028 Tetratricopeptide repeats RU84_14390 SM01400 RU84_14390 RU84_14435 SM00257 Lysin motif RU84_14445 SM00822 RU84_14445 RU84_14450 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. RU84_14485 SM00363 S4 RNA-binding domain RU84_14535 SM00278 Helix-hairpin-helix DNA-binding motif class 1 RU84_14535 SM00292 breast cancer carboxy-terminal domain RU84_14535 SM00532 Ligase N family RU84_14540 SM00771 ZipA, C-terminal domain (FtsZ-binding) RU84_14550 SM00345 helix_turn_helix gluconate operon transcriptional repressor RU84_14570 SM00382 ATPases associated with a variety of cellular activities RU84_14570 SM00962 SRP54-type protein, GTPase domain RU84_14570 SM00963 SRP54-type protein, helical bundle domain RU84_14715 SM00357 Cold shock protein domain RU84_14760 SM00926 Molybdopterin oxidoreductase Fe4S4 domain RU84_14760 SM00929 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region RU84_14765 SM00928 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region RU84_14790 SM00267 diguanylate cyclase RU84_14800 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain RU84_14800 SM00387 Histidine kinase-like ATPases RU84_14800 SM00388 His Kinase A (phosphoacceptor) domain RU84_14805 SM00448 cheY-homologous receiver domain RU84_14805 SM00862 Transcriptional regulatory protein, C terminal RU84_14860 SM00903 Flavin reductase like domain RU84_14880 SM00342 helix_turn_helix, arabinose operon control protein RU84_15180 SM00331 Sigma factor PP2C-like phosphatases RU84_15200 SM00347 helix_turn_helix multiple antibiotic resistance protein RU84_15210 SM00382 ATPases associated with a variety of cellular activities RU84_15230 SM00279 Helix-hairpin-helix class 2 (Pol1 family) motifs RU84_15230 SM00474 3'-5' exonuclease RU84_15230 SM00475 5'-3' exonuclease RU84_15230 SM00482 DNA polymerase A domain RU84_15245 SM00977 TilS substrate C-terminal domain RU84_15265 SM00357 Cold shock protein domain RU84_15265 SM00382 ATPases associated with a variety of cellular activities RU84_15265 SM00959 Rho termination factor, N-terminal domain RU84_15275 SM00411 bacterial (prokaryotic) histone like domain RU84_15280 SM00873 B3/4 domain RU84_15280 SM00874 tRNA synthetase B5 domain RU84_15280 SM00896 Ferredoxin-fold anticodon binding domain RU84_15300 SM00530 Helix-turn-helix XRE-family like proteins RU84_15335 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain RU84_15380 SM00278 Helix-hairpin-helix DNA-binding motif class 1 RU84_15395 SM00954 Region found in RelA / SpoT proteins RU84_15415 SM00073 Histidine Phosphotransfer domain RU84_15415 SM00387 Histidine kinase-like ATPases RU84_15415 SM00388 His Kinase A (phosphoacceptor) domain RU84_15415 SM00448 cheY-homologous receiver domain RU84_15455 SM01002 Alanine dehydrogenase/PNT, C-terminal domain RU84_15455 SM01003 Alanine dehydrogenase/PNT, N-terminal domain RU84_15515 SM00226 Low molecular weight phosphatase family RU84_15520 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor RU84_15530 SM00422 helix_turn_helix, mercury resistance RU84_15540 SM00899 RU84_15540 RU84_15590 SM00448 cheY-homologous receiver domain RU84_15590 SM00862 Transcriptional regulatory protein, C terminal RU84_15595 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain RU84_15595 SM00387 Histidine kinase-like ATPases RU84_15595 SM00388 His Kinase A (phosphoacceptor) domain RU84_15600 SM00746 metallochaperone-like domain RU84_15630 SM00271 DnaJ molecular chaperone homology domain RU84_15720 SM01236 RU84_15720 RU84_15735 SM00052 Putative diguanylate phosphodiesterase RU84_15735 SM00267 diguanylate cyclase RU84_15780 SM00382 ATPases associated with a variety of cellular activities RU84_15800 SM00479 RU84_15800 RU84_15810 SM00450 Rhodanese Homology Domain RU84_15835 SM00564 beta-propeller repeat RU84_15860 SM00028 Tetratricopeptide repeats RU84_15870 SM00562 RU84_15870 RU84_15880 SM00014 Acid phosphatase homologues RU84_15890 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. RU84_15890 SM00245 tail specific protease RU84_15965 SM00382 ATPases associated with a variety of cellular activities RU84_15965 SM00994 ClpX C4-type zinc finger RU84_15965 SM01086 C-terminal, D2-small domain, of ClpB protein RU84_15985 SM00702 Prolyl 4-hydroxylase alpha subunit homologues. RU84_15990 SM00917 LeuA allosteric (dimerisation) domain RU84_16005 SM00671 Sel1-like repeats. RU84_16145 SM00360 RNA recognition motif RU84_16165 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain RU84_16165 SM00437 Bacterial DNA topoisomerase I DNA-binding domain RU84_16165 SM00493 RU84_16165 RU84_16180 SM00829 Enoylreductase RU84_16190 SM00382 ATPases associated with a variety of cellular activities RU84_16220 SM00859 Semialdehyde dehydrogenase, NAD binding domain RU84_16235 SM00870 RU84_16235 RU84_16245 SM00342 helix_turn_helix, arabinose operon control protein RU84_16250 SM00316 Ribosomal protein S1-like RNA-binding domain RU84_16265 SM01329 RU84_16265 RU84_16305 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. RU84_16345 SM00363 S4 RNA-binding domain RU84_16350 SM00316 Ribosomal protein S1-like RNA-binding domain RU84_16380 SM00729 Elongator protein 3, MiaB family, Radical SAM RU84_16495 SM00849 Metallo-beta-lactamase superfamily RU84_16535 SM00116 Domain in cystathionine beta-synthase and other proteins. RU84_16535 SM01091 Transporter associated domain RU84_16565 SM00487 DEAD-like helicases superfamily RU84_16565 SM00490 helicase superfamily c-terminal domain RU84_16585 SM00271 DnaJ molecular chaperone homology domain RU84_16600 SM00316 Ribosomal protein S1-like RNA-binding domain RU84_16600 SM00322 K homology RNA-binding domain RU84_16605 SM01387 RU84_16605 RU84_16615 SM00382 ATPases associated with a variety of cellular activities RU84_16725 SM00316 Ribosomal protein S1-like RNA-binding domain RU84_16785 SM00967 RNA 2'-O ribose methyltransferase substrate binding RU84_16795 SM00028 Tetratricopeptide repeats RU84_16810 SM00732 Likely ribonuclease with RNase H fold. RU84_16830 SM00346 helix_turn_helix isocitrate lyase regulation RU84_16840 SM00342 helix_turn_helix, arabinose operon control protein RU84_16855 SM00278 Helix-hairpin-helix DNA-binding motif class 1 RU84_16855 SM00465 GIY-YIG type nucleases (URI domain) RU84_16890 SM00422 helix_turn_helix, mercury resistance RU84_16915 SM00387 Histidine kinase-like ATPases RU84_16955 SM00663 RNA polymerase I subunit A N-terminus RU84_16980 SM00649 Ribosomal protein L11/L12 RU84_16985 SM00738 In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold. RU84_16985 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. RU84_17035 SM00240 Forkhead associated domain RU84_17045 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. RU84_17055 SM00528 Domain in histone-like proteins of HNS family RU84_17085 SM00448 cheY-homologous receiver domain RU84_17085 SM00850 LytTr DNA-binding domain RU84_17175 SM00899 RU84_17175 RU84_17205 SM00421 helix_turn_helix, Lux Regulon RU84_17205 SM00448 cheY-homologous receiver domain RU84_17210 SM00387 Histidine kinase-like ATPases RU84_17210 SM00388 His Kinase A (phosphoacceptor) domain RU84_17215 SM00382 ATPases associated with a variety of cellular activities RU84_17215 SM00448 cheY-homologous receiver domain RU84_17220 SM00245 tail specific protease RU84_17285 SM00938 Nitrogen regulatory protein P-II RU84_17295 SM00382 ATPases associated with a variety of cellular activities RU84_17300 SM00345 helix_turn_helix gluconate operon transcriptional repressor RU84_17305 SM01007 Class II Aldolase and Adducin N-terminal domain RU84_17310 SM01130 RU84_17310 RU84_17345 SM00434 DNA Topoisomerase IV RU84_17365 SM01091 Transporter associated domain RU84_17380 SM00641 Glycosyl hydrolases family 25 RU84_17400 SM00729 Elongator protein 3, MiaB family, Radical SAM RU84_17410 SM00422 helix_turn_helix, mercury resistance RU84_17525 SM00342 helix_turn_helix, arabinose operon control protein RU84_17545 SM00382 ATPases associated with a variety of cellular activities RU84_17595 SM00382 ATPases associated with a variety of cellular activities RU84_17615 SM00919 Malic enzyme, NAD binding domain RU84_17615 SM01274 RU84_17615 RU84_17620 SM00836 DALR anticodon binding domain RU84_17620 SM01016 Arginyl tRNA synthetase N terminal dom RU84_17735 SM00823 Phosphopantetheine attachment site RU84_17735 SM00824 Thioesterase RU84_17740 SM00823 Phosphopantetheine attachment site RU84_17740 SM01294 RU84_17740 RU84_17755 SM00421 helix_turn_helix, Lux Regulon RU84_17825 SM01005 Alanine racemase, C-terminal domain RU84_17835 SM00344 helix_turn_helix ASNC type RU84_17875 SM00825 Beta-ketoacyl synthase RU84_17920 SM00345 helix_turn_helix gluconate operon transcriptional repressor RU84_17920 SM00895 RU84_17920 RU84_17940 SM00345 helix_turn_helix gluconate operon transcriptional repressor RU84_17940 SM00895 RU84_17940 RU84_17965 SM00984 UDP binding domain RU84_18005 SM00858 RU84_18005 RU84_18035 SM00984 UDP binding domain RU84_18045 SM00226 Low molecular weight phosphatase family RU84_18070 SM00644 RU84_18070 RU84_18150 SM00062 Bacterial periplasmic substrate-binding proteins RU84_18155 SM00062 Bacterial periplasmic substrate-binding proteins RU84_18170 SM00382 ATPases associated with a variety of cellular activities RU84_18190 SM00904 Riboflavin kinase RU84_18265 SM00849 Metallo-beta-lactamase superfamily RU84_18285 SM00235 Zinc-dependent metalloprotease RU84_18290 SM00235 Zinc-dependent metalloprotease RU84_18310 SM01001 AIR carboxylase RU84_18335 SM00014 Acid phosphatase homologues RU84_18405 SM01234 RU84_18405 RU84_18450 SM00072 Guanylate kinase homologues. RU84_18480 SM00530 Helix-turn-helix XRE-family like proteins RU84_18510 SM00481 DNA polymerase alpha chain like domain RU84_18535 SM00279 Helix-hairpin-helix class 2 (Pol1 family) motifs RU84_18535 SM00475 5'-3' exonuclease RU84_18540 SM00305 Hint (Hedgehog/Intein) domain C-terminal region RU84_18645 SM00479 RU84_18645 RU84_18735 SM00829 Enoylreductase RU84_18760 SM00829 Enoylreductase RU84_18825 SM00257 Lysin motif RU84_18840 SM00487 DEAD-like helicases superfamily RU84_18840 SM00490 helicase superfamily c-terminal domain RU84_18845 SM00470 ParB-like nuclease domain RU84_18855 SM00470 ParB-like nuclease domain RU84_18860 SM00382 ATPases associated with a variety of cellular activities RU84_18975 SM00232 JAB/MPN domain RU84_19045 SM00849 Metallo-beta-lactamase superfamily RU84_19070 SM00883 Chaperonin 10 Kd subunit RU84_19100 SM00857 Resolvase, N terminal domain RU84_19120 SM00318 Staphylococcal nuclease homologues RU84_19350 SM00530 Helix-turn-helix XRE-family like proteins RU84_19360 SM00671 Sel1-like repeats.